Sequence Length Modifications Modified sequence Oxidation (M) Probabilities Phospho (STY) Probabilities Oxidation (M) Score Diffs Phospho (STY) Score Diffs Acetyl (Protein N-term) Oxidation (M) Phospho (STY) Missed cleavages Proteins Leading proteins Leading razor protein Gene names Protein names Type Raw file MS/MS m/z Charge m/z Mass Resolution Uncalibrated - Calibrated m/z [ppm] Uncalibrated - Calibrated m/z [Da] Mass error [ppm] Mass error [Da] Uncalibrated mass error [ppm] Uncalibrated mass error [Da] Max intensity m/z 0 Retention time Retention length Calibrated retention time Calibrated retention time start Calibrated retention time finish Retention time calibration Match time difference Match m/z difference Match q-value Match score Number of data points Number of scans Number of isotopic peaks PIF Fraction of total spectrum Base peak fraction PEP MS/MS count MS/MS scan number Score Delta score Combinatorics Intensity Reporter intensity corrected 0 Reporter intensity corrected 1 Reporter intensity corrected 2 Reporter intensity corrected 3 Reporter intensity corrected 4 Reporter intensity corrected 5 Reporter intensity corrected 6 Reporter intensity corrected 7 Reporter intensity corrected 8 Reporter intensity corrected 9 Reporter intensity 0 Reporter intensity 1 Reporter intensity 2 Reporter intensity 3 Reporter intensity 4 Reporter intensity 5 Reporter intensity 6 Reporter intensity 7 Reporter intensity 8 Reporter intensity 9 Reporter intensity count 0 Reporter intensity count 1 Reporter intensity count 2 Reporter intensity count 3 Reporter intensity count 4 Reporter intensity count 5 Reporter intensity count 6 Reporter intensity count 7 Reporter intensity count 8 Reporter intensity count 9 Reporter PIF Reporter fraction Reverse Potential contaminant id Protein group IDs Peptide ID Mod. peptide ID MS/MS IDs Best MS/MS AIF MS/MS IDs Oxidation (M) site IDs Phospho (STY) site IDs AAAAAAAGDSDSWDADAFSVEDPVRK 26 Acetyl (Protein N-term) _(ac)AAAAAAAGDSDSWDADAFSVEDPVRK_ 1 0 0 1 O75822 O75822 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 956.121215820313 3 879.068411 2634.1834 31536.5654834152 1.4174 0.001246 86896 76.387 86897 76.389 955.79002627597 86.812 0.46711 86.812 86.561 87.028 0 50 15 4 0.928023588557079 0.00268922623980077 0.033157330929144 0.00012295 1 20248 57.432 40.507 1 19795000 5981.9 7356.5 5746.1 6551.7 5256 5213.9 6085.3 7168.5 6815.1 35796 5659.6 6944.9 5795.1 6754.7 5375.2 5377.7 6174.5 8193.3 6693.5 33872 1 1 1 1 1 1 1 1 1 1 0 204 0 0 0 0 AAAAAAAGDSDSWDADAFSVEDPVRK 26 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVRK_ AAAAAAAGDS(0.912)DS(0.088)WDADAFSVEDPVRK AAAAAAAGDS(10.17)DS(-10.17)WDADAFS(-96.08)VEDPVRK 1 0 1 1 O75822 O75822 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 982.447021484375 3 905.723854 2714.14973 31527.2296217862 1.5875 0.0014379 84339 76.388 84340 76.389 982.445788662086 89.863 6.1161 89.863 89.111 95.227 0 724 211 7 0.971788067973416 0.0279622754002979 0.753543618258472 4.4717E-33 8 21051 239.87 226.44 3 232770000 26659 30145 23440 31501 30066 23530 29400 37247 33350 644050 25215 28485 23868 32134 30114 25326 30066 56236 32739 607320 8 8 8 8 8 8 8 8 8 8 1 204 0 1 1;2;3;4;5;6;7;8 3 354 AAAAAAAGDSDSWDADAFSVEDPVRK 26 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVRK_ AAAAAAAGDS(0.885)DS(0.115)WDADAFSVEDPVRK AAAAAAAGDS(8.86)DS(-8.86)WDADAFS(-48.66)VEDPVRK 1 0 1 1 O75822 O75822 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 982.778930664063 3 905.723854 2714.14973 31657.096608793 1.4286 0.0012939 84337 76.386 84338 76.387 982.778827589416 95.128 1.4639 95.128 94.71 96.173 0 80 50 2 0.7403006256011 0.00162630851059559 0.041096356439235 5.4794E-05 1 22222 63.115 54.147 3 21725000 2350.3 3413.6 2420.8 3546.3 2285.1 2917.9 2397.9 2838.9 3510.1 50801 2224.3 3225.5 2432.1 3623 2329.6 3047.5 2465.9 4381.4 3416.3 47901 1 1 1 1 1 1 1 1 1 1 2 204 0 1 9 9 354 AAAAAAAGDSDSWDADAFSVEDPVRK 26 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVRK_ AAAAAAAGDS(0.902)DS(0.098)WDADAFSVEDPVRK AAAAAAAGDS(9.64)DS(-9.64)WDADAFS(-55.56)VEDPVRK 1 0 1 1 O75822 O75822 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 982.449157714844 3 905.723854 2714.14973 31731.6906561551 1.5228 0.0013792 84338 76.387 84339 76.388 982.445078323488 96.299 2.7067 96.299 95.053 97.76 0 214 93 4 0.963114735967914 0.00466051151882507 0.0400276581073369 7.7461E-18 1 22402 167.07 142.68 3 11787000 1871.1 2130.6 2088.1 2479.8 2220.9 2192.4 2177.2 3734.3 2431.2 43204 1771.3 2014.7 2091.7 2520.3 2245.6 2311.1 2225.3 4987.9 2388.1 40768 1 1 1 1 1 1 1 1 1 1 3 204 0 1 10 10 354 AAAAAAAGDSDSWDADAFSVEDPVRK 26 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVRK_ AAAAAAAGDS(0.977)DS(0.023)WDADAFSVEDPVRK AAAAAAAGDS(16.32)DS(-16.32)WDADAFS(-58.82)VEDPVRK 1 0 1 1 O75822 O75822 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 982.440673828125 3 905.723854 2714.14973 32368.0107072016 1.5001 0.0013587 84337 76.386 84338 76.387 982.444175982716 97.842 0.78456 97.842 97.531 98.316 0 37 26 2 0.336685794579684 0.00060207330039422 0.0409572769250946 2.1652E-12 1 22664 146.03 133.36 3 9126200 2027.3 2142.7 2505.2 2956.4 3176.9 2147.6 2530 4280.4 2941.7 45536 1920.2 2028.8 2502.1 2972.9 3175.5 2301.3 2617.7 5583 2885.1 42977 1 1 1 1 1 1 1 1 1 1 4 204 0 1 11 11 354 AAAAAALSGAGTPPAGGGAGGGGAGGGGSPPGGWAVAR 38 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAAAALSGAGTPPAGGGAGGGGAGGGGS(ph)PPGGWAVAR_ AAAAAALSGAGTPPAGGGAGGGGAGGGGS(1)PPGGWAVAR AAAAAALS(-48.1)GAGT(-44.63)PPAGGGAGGGGAGGGGS(44.63)PPGGWAVAR 1 0 1 0 Q01167 Q01167 Q01167 FOXK2 Forkhead box protein K2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1023.48101806641 3 1022.81077 3065.41047 30939.2596544 1.1915 0.0012187 -0.48554 -0.00049662 0.70599 0.00072209 1023.14500758192 86.641 0.95497 86.641 86.187 87.142 0 136 32 5 0.973096905999264 0.00299334585301735 0.044939915397892 1.0053E-05 1 20156 62.172 45.024 3 50965000 2567.3 2211.2 2125.9 2228.6 2328.7 2046 2922.5 3558.7 2812.1 23062 2427.7 2089 2169.6 2284.2 2359.5 2121.4 2943.3 4205.9 2779.4 21798 1 1 1 1 1 1 1 1 1 1 5 833 1 2 12 12 1342 AAAAAATAPPSPGPAQPGPR 20 Phospho (STY) _AAAAAATAPPS(ph)PGPAQPGPR_ AAAAAATAPPS(1)PGPAQPGPR AAAAAAT(-62.22)APPS(62.22)PGPAQPGPR 0 0 1 0 Q6SPF0 Q6SPF0 Q6SPF0 SAMD1 Atherin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.35595703125 3 612.631514 1834.87271 38121.9273331286 1.7322 0.0010612 124690 76.389 124690 76.39 689.355227146094 41.739 0.62575 41.739 41.339 41.965 -7.1054E-15 75 21 5 0.982891322660754 0.00828185943528188 0.0473717483501104 1.7768E-05 1 9517 129.2 104.15 2 80082000 20554 19546 21252 19963 20342 23419 17194 23274 21380 5222.4 19452 18467 21343 20527 20657 23327 17768 23508 20918 5456.1 1 1 1 1 1 1 1 1 1 1 6 1276 2 3 13 13 2272 AAAAPDSRVSEEENLKK 17 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAAPDSRVS(ph)EEENLKK_ AAAAPDS(0.006)RVS(0.994)EEENLKK AAAAPDS(-22.34)RVS(22.34)EEENLKK 1 0 1 2 Q9Y3B9 Q9Y3B9 Q9Y3B9 RRP15 RRP15-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.081726074219 3 646.305243 1935.8939 36149.5330429468 1.8812 0.0012158 236380 152.78 236380 152.78 799.080647932365 52.338 0.44841 52.338 52.101 52.549 0 54 15 5 0.813262667686426 0.00221039188147714 0.0366228263234747 4.6565E-11 1 12163 131.56 111.82 2 37675000 19020 24103 18515 24100 18886 17663 19727 22029 25188 24687 17996 22769 18679 24642 19160 18093 20190 22671 24621 23756 1 1 1 1 1 1 1 1 1 1 7 2266 3 4 14 14 4194 AAAASAAEAGIATTGTEDSDDALLK 25 Unmodified _AAAASAAEAGIATTGTEDSDDALLK_ 0 0 0 0 P55036 P55036 P55036 PSMD4 26S proteasome non-ATPase regulatory subunit 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 927.15380859375 3 774.043203 2319.10778 32899.6758680373 2.1367 0.0016539 197370 152.77 197370 152.78 926.818633037472 76.993 0.45951 76.993 76.766 77.225 -1.4211E-14 40 15 4 0.871920812849741 0.00247446105910101 0.012067927389836 5.8962E-18 1 18058 237.15 213.59 1 13512000 5650.4 6782 5598.8 7206.9 7702.9 4839.7 7073.6 7235.7 6695.6 18986 5346.5 6409.1 5665.2 7335.8 7683.4 5022.5 7220.2 7737.2 6622.6 18046 1 1 1 1 1 1 1 1 1 1 8 716 4 5 15 15 AAADGDDSLYPIAVLIDELR 20 Acetyl (Protein N-term) _(ac)AAADGDDSLYPIAVLIDELR_ 1 0 0 0 P30153 P30153 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.369140625 3 720.36707 2158.07938 38012.6389920863 1.8579 0.0013384 0.49694 0.00035798 2.3548 0.0016963 720.36738685249 104.66 0.11066 104.66 104.6 104.71 0 7 3 3 1 0.000171766809305229 0.00218361507698552 0.0089327 1 24640 49.528 37.168 1 2063000 457.86 579.48 491.98 374.98 517.42 476.76 993.68 767.92 544.45 5868.3 433.38 546.25 494.64 399.14 529.89 488.04 976.31 935.82 556.27 5543.5 1 1 1 1 1 1 1 1 1 1 9 512 5 6 16 16 AAAKSPDLSNQNSDQANEEWETASESSDFTSER 33 Phospho (STY) _AAAKSPDLS(ph)NQNSDQANEEWETASESSDFTSER_ AAAKS(0.499)PDLS(0.501)NQNSDQANEEWETASESSDFTSER AAAKS(-0.03)PDLS(0.03)NQNS(-59.1)DQANEEWET(-298.17)AS(-312.15)ES(-323.15)S(-327.62)DFT(-339.61)S(-342.86)ER 0 0 1 1 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1036.21875 4 921.132872 3680.50238 31049.4739246123 1.4546 0.0013399 124390 114.58 124390 114.58 1035.96584565611 66.928 0.74508 66.928 66.374 67.119 0 77 25 6 0.97036806213908 0.00453483027218091 0.0785275156687447 2.4294E-57 1 15720 378.08 366.84 9 22133000 1180.5 2206.3 1423.7 1748.5 533.37 1613.1 1303.3 2378.9 1795.1 26699 1118 2081.6 1410.2 1821 605.19 1682.8 1303.2 3161 1750.4 25195 1 1 1 1 1 1 1 1 1 1 10 624 6 7 17 17 1025 AAALGASGGAGAGDDDFDQFDKPGAER 27 Acetyl (Protein N-term) _(ac)AAALGASGGAGAGDDDFDQFDKPGAER_ 1 0 0 1 Q96EV2 Q96EV2 Q96EV2 RBM33 RNA-binding protein 33 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 946.781433105469 3 870.056394 2607.14735 31920.5713257932 1.7334 0.0015082 87796 76.388 87798 76.389 946.778192357457 74.729 0.40966 74.729 74.509 74.918 -1.4211E-14 40 13 4 0.97320892388029 0.00314913747337282 0.0551859683220737 1.7607E-07 1 17541 82.65 64.193 1 13387000 5407.2 6531.2 5023.5 6628.5 5774.7 5432 6144.3 6499 5995 24278 5115.2 6170.3 5090.3 6780.7 5820.9 5557.3 6232.5 7209.2 5921.6 23011 1 1 1 1 1 1 1 1 1 1 11 1674 7 8 18 18 AAAPAPEEEMDECEQALAAEPK 22 Unmodified _AAAPAPEEEMDECEQALAAEPK_ 0 0 0 0 P26641 P26641 P26641 EEF1G Elongation factor 1-gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 939.456237792969 3 786.34724 2356.01989 31978.0676036571 1.7859 0.0014044 194280 152.77 194290 152.78 939.456560753832 73.503 0.57043 73.503 73.242 73.812 0 61 19 4 0.970595434010778 0.0023092417892079 0.0180004628318156 5.7245E-08 1 17243 151.96 138.23 1 22344000 6927.5 8619 7727.5 8852.7 7572.8 6381.1 8117.3 7739.6 7977.1 23438 6558.2 8143.4 7734.3 9035.7 7701.6 6567.6 8232.7 8416.9 7877 22249 1 1 1 1 1 1 1 1 1 1 12 484 8 9 19 19 AAAPQAPGRGSLRK 14 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAPQAPGRGS(ph)LRK_ AAAPQAPGRGS(1)LRK AAAPQAPGRGS(93.81)LRK 1 0 1 2 P78345 P78345 P78345 RPP38 Ribonuclease P protein subunit p38 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.648071289063 3 501.259351 1500.75623 41405.6935136741 1.785 0.00089476 152390 76.388 152390 76.389 577.647092756386 38.537 0.429 38.537 38.325 38.754 0 50 13 5 0.879260387052655 0.00514436807841432 0.0813501992712487 1.7766E-05 1 8720 93.812 77.922 1 75194000 15041 17431 14317 17964 19305 12815 14667 15348 16983 2825.2 14230 16470 14510 18330 19233 13112 15216 15382 16659 3015.5 1 1 1 1 1 1 1 1 1 1 13 797 9 10 20 20 1272 AAARLSLTDPLVAER 15 Phospho (STY) _AAARLS(ph)LTDPLVAER_ AAARLS(0.998)LT(0.002)DPLVAER AAARLS(26.55)LT(-26.55)DPLVAER 0 0 1 1 P13224 P13224 P13224 GP1BB Platelet glycoprotein Ib beta chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.346008300781 3 554.957338 1661.85019 39482.3742393099 1.8737 0.0010398 137650 76.388 137650 76.389 631.345014364231 77.156 0.66142 77.156 76.884 77.545 1.4211E-14 80 22 5 0.627704985290081 0.00941418830820882 0.0678729592723878 4.4456E-06 1 18084 137.86 110.45 2 55269000 20383 33309 23189 33423 20860 22293 19284 23742 32700 7885.1 19298 31467 23157 34131 21297 22875 20073 23996 31696 7974.3 1 1 1 1 1 1 1 1 1 1 14 375 10 11 21 21 612 AAASVTPPGSLELLQPGFSK 20 Acetyl (Protein N-term),Phospho (STY) _(ac)AAASVT(ph)PPGSLELLQPGFSK_ AAAS(0.102)VT(0.898)PPGSLELLQPGFSK AAAS(-9.47)VT(9.47)PPGS(-34.54)LELLQPGFS(-78.12)K 1 0 1 0 Q12933 Q12933 Q12933 TRAF2 TNF receptor-associated factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.404174804688 3 698.016922 2091.02894 35659.559626906 1.1321 0.0007902 109440 76.388 109440 76.388 774.404467307029 101.23 0.31733 101.23 101.07 101.39 0 28 10 4 0.983901659831226 0.00829185665948416 0.209456876060445 4.6117E-16 1 23757 86.856 64.381 4 75572000 8689.8 17099 8435.6 16202 20244 8432.2 18803 17252 16577 32121 8221.8 16147 8650.6 16565 19824 8969.9 19148 17931 16451 30645 1 1 1 1 1 1 1 1 1 1 15 914 11 12 22 22 4522 AAATPESQEPQAK 13 Phospho (STY) _AAATPES(ph)QEPQAK_ AAAT(0.001)PES(0.999)QEPQAK AAAT(-29.74)PES(29.74)QEPQAK 0 0 1 0 P49006 P49006 P49006 MARCKSL1 MARCKS-related protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.650085449219 3 469.876573 1406.60789 NaN NaN NaN NaN NaN NaN NaN NaN 37.414 1 37.414 36.914 37.914 0 NaN NaN NaN 0.00017756 1 8454 118.52 95.51 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 631 12 13 23 23 1042 AAAVAAAGAGEPQSPDELLPK 21 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAVAAAGAGEPQS(ph)PDELLPK_ AAAVAAAGAGEPQS(1)PDELLPK AAAVAAAGAGEPQS(66.92)PDELLPK 1 0 1 0 Q9NS69 Q9NS69 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.055053710938 3 695.668182 2083.98272 35657.6769743916 2.0491 0.0014255 109800 76.387 109810 76.388 772.389923412755 92.423 1.5943 92.423 91.91 93.504 0 143 54 4 0.898883514994422 0.00193412958127351 0.0437180524526469 4.4269E-06 1 21486 66.925 54.076 1 20128000 5319 5130.2 5958.1 4555.5 9567.3 5285.9 8843.2 7247.8 4967.4 26271 5035.5 4843 6005.5 4724.2 9481.9 5339.8 8930.3 7985.6 5065.8 24905 1 1 1 1 1 1 1 1 1 1 17 2024 13 14 24 24 3676 AAAVAAPLAAGGEEAAATTSVPGSPGLPGR 30 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAVAAPLAAGGEEAAATTSVPGS(ph)PGLPGR_ AAAVAAPLAAGGEEAAAT(0.006)T(0.049)S(0.443)VPGS(0.502)PGLPGR AAAVAAPLAAGGEEAAAT(-18.92)T(-10.15)S(-0.55)VPGS(0.55)PGLPGR 1 0 1 0 O75427 O75427 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 914.452514648438 3 913.783156 2738.32764 32654.8809283956 1.3299 0.0012153 0.58476 0.00053434 1.9147 0.0017496 914.117900569419 89.126 0.64019 89.126 88.794 89.434 0 82 21 5 0.971925168505234 0.00542354072670419 0.0486776406437279 0.0091215 1 20754 44.251 36.354 4 39343000 3025.4 3821 2907 4070.7 4063 2529.9 3543.7 5026.7 3502.6 40626 2862.3 3610.9 2947.2 4139.7 4047.6 2712.4 3631 6169.6 3457.8 38371 1 1 1 1 1 1 1 1 1 1 18 186 14 15 25 25 322 AAAVAAPLAAGGEEAAATTSVPGSPGLPGRR 31 Acetyl (Protein N-term),Phospho (STY) _(ac)AAAVAAPLAAGGEEAAATTSVPGS(ph)PGLPGRR_ AAAVAAPLAAGGEEAAATTS(0.004)VPGS(0.995)PGLPGRR AAAVAAPLAAGGEEAAAT(-35.83)T(-34.3)S(-24.08)VPGS(24.08)PGLPGRR 1 0 1 1 O75427 O75427 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 966.152893066406 3 965.81686 2894.42875 31810.5393826605 1.3428 0.0012969 0.3401 0.00032847 1.6829 0.0016253 966.151253690645 81.268 0.63428 81.268 80.959 81.593 0 101 21 7 0.989652703814479 0.00754874324140049 0.147907551347595 4.499E-18 1 18987 195.86 184.26 4 120070000 4546.1 3150.3 3710.9 2900 2911.1 2690.1 3450.4 3978.9 2133.6 21462 4298.7 2974.6 3775.9 2989.5 3007.8 2762.4 3450.3 4587.8 2161.1 20301 1 1 1 1 1 1 1 1 1 1 19 186 15 16 26 26 322 AAAYDISEDEED 12 Phospho (STY) _AAAYDIS(ph)EDEED_ AAAYDIS(1)EDEED AAAY(-102.33)DIS(102.33)EDEED 0 0 1 0 P49585 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.830200195313 2 704.245409 1406.47627 35673.2452766086 1.7494 0.001232 162700 114.58 162700 114.58 818.82698193838 57.91 1.976 57.91 57.534 59.51 0 136 67 3 0.626290120468707 0.00109404548013471 0.0517374641946769 6.7166E-07 2 13519 138.71 130.37 2 18998000 27369 25570 27019 24835 23689 28093 23653 26864 28324 28512 25897 24151 27186 25597 24240 28052 24207 27853 27749 27469 2 2 2 2 2 2 2 2 2 2 20 641 16 17 27;28 27 1060 AADEEAFEDNSEEYIR 16 Unmodified _AADEEAFEDNSEEYIR_ 0 0 0 0 P55060 P55060 P55060 CSE1L Exportin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1059.47924804688 2 944.397592 1886.78063 29757.4583335131 1.2502 0.0011807 121330 114.58 121330 114.58 1059.478944437 65.649 0.38383 65.649 65.483 65.867 0 35 12 4 0.959238199059798 0.000797120723492664 0.0239643161462745 7.6598E-32 1 15425 323.66 300.78 1 12328000 7337.7 11093 8887.2 11063 7902 7991.8 8303.7 10403 11749 11882 6949.1 10479 8848.5 11311 8086.1 8200.3 8527.5 10700 11447 11429 1 1 1 1 1 1 1 1 1 1 21 717 17 18 29 29 AADISESSGADCK 13 Acetyl (Protein N-term) _(ac)AADISESSGADCK_ 1 0 0 0 O43583 O43583 O43583 DENR Density-regulated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.367492675781 2 676.785363 1351.55617 35456.604301911 1.6397 0.0011097 169300 114.58 169310 114.58 791.367436093364 45.71 0.43738 45.71 45.495 45.933 0 42 14 4 0.971977453095129 0.000637604102944295 0.0066685937167721 6.9281E-16 1 10520 143.89 127.69 1 24209000 18538 19799 17766 20347 17764 17036 18586 18525 18911 11010 17539 18706 17935 20805 18039 17263 18888 18856 18646 10796 1 1 1 1 1 1 1 1 1 1 22 119 18 19 30 30 AADPPAENSSAPEAEQGGAE 20 Unmodified _AADPPAENSSAPEAEQGGAE_ 0 0 0 0 P67809 P67809 P67809 YBX1 Nuclease-sensitive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1064.49084472656 2 949.405948 1896.79734 30380.8484642596 1.7873 0.0016969 120690 114.58 120690 114.58 1063.98703239791 36.516 0.6343 36.516 36.145 36.78 0 91 21 5 0.990448225375833 0.00135665678927644 0.0458744261337143 1.6735E-10 1 8179 189.1 174.41 1 128650000 2495 3700.1 2835.8 3981 2700.2 3517.8 3657.4 3624.7 4103.7 240.86 2362.2 3497 2836 4063 2762.2 3548.6 3689.1 3639 4030.2 310.69 1 1 1 1 1 1 1 1 1 1 23 785 19 20 31 31 AADPPAENSSAPEAEQGGAE 20 Phospho (STY) _AADPPAENSS(ph)APEAEQGGAE_ AADPPAENS(0.137)S(0.863)APEAEQGGAE AADPPAENS(-8)S(8)APEAEQGGAE 0 0 1 0 P67809 P67809 P67809 YBX1 Nuclease-sensitive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.6513671875 3 659.928501 1976.76367 36498.8559641444 2.0427 0.001348 115750 76.387 115750 76.388 736.316315078427 38.162 1.5126 38.162 37.769 39.282 0 161 51 5 0.995245329293193 0.00848866944065652 0.0730299654618808 2.8602E-05 1 8601 123.36 113.99 2 125370000 10734 10715 10215 10007 14059 12388 12564 11918 10469 4560.8 10155 10118 10360 10356 14017 12314 12803 12110 10418 4570.3 1 1 1 1 1 1 1 1 1 1 24 785 19 21 32 32 1257 AADSQNSGEGNTGAAESSFSQEVSR 25 Phospho (STY) _AADSQNSGEGNTGAAESSFS(ph)QEVSR_ AADSQNSGEGNTGAAESS(0.01)FS(0.988)QEVS(0.001)R AADS(-160.46)QNS(-144.05)GEGNT(-82.21)GAAES(-37.28)S(-20)FS(20)QEVS(-28.38)R 0 0 1 0 P12270 P12270 P12270 TPR Nucleoprotein TPR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 932.740173339844 3 856.015697 2565.02526 32129.0123660037 1.7184 0.001471 89238 76.389 89239 76.39 932.738705596634 48.869 0.4305 48.869 48.68 49.11 0 32 14 3 0.627953072182304 0.000925578749034533 0.0059671586241239 2.307E-12 1 11341 201.63 187.57 7 11123000 5734.7 6000.3 6150.2 6103.1 7873.3 5489.5 8283.4 6850.9 6802.7 6403.6 5428.1 5668.8 6190.9 6250.3 7892.5 5558.9 8371.6 7012.2 6775 6188.3 1 1 1 1 1 1 1 1 1 1 25 370 20 22 33 33 602 AADVFMCSPR 10 Acetyl (Protein N-term),Phospho (STY) _(ac)AADVFMCS(ph)PR_ AADVFMCS(1)PR AADVFMCS(60.4)PR 1 0 1 0 Q9HAP2 Q9HAP2 Q9HAP2 MLXIP MLX-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.248291015625 2 638.248524 1274.48249 40715.9955763705 1.6966 0.0010829 0.29913 0.00019092 1.9957 0.0012738 638.248683617652 77.279 0.60435 77.279 76.998 77.603 -1.4211E-14 33 20 2 0.683507813413679 0.000966402308055528 0.0513816618624787 0.0015858 1 18120 60.401 51.187 1 5208300 5825.5 5599.4 5017.6 6765.4 6070.4 5728.5 5841.9 6527.3 6828.7 5920.5 5509.3 5296.2 5111.3 6858.7 6095.8 5809.4 5984.6 6694.8 6696 5725.9 1 1 1 1 1 1 1 1 1 1 26 1971 21 23 34 34 3587 AADVSVTHRPPLSPK 15 Acetyl (Protein N-term),Phospho (STY) _(ac)AADVSVTHRPPLS(ph)PK_ AADVS(0.001)VT(0.026)HRPPLS(0.973)PK AADVS(-29.74)VT(-15.69)HRPPLS(15.69)PK 1 0 1 1 Q8IY67 Q8IY67 Q8IY67 RAVER1 Ribonucleoprotein PTB-binding 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.674926757813 3 566.285455 1695.83453 38568.6734622127 1.3243 0.00074993 134890 76.388 134890 76.388 642.673169846247 55.082 1.2693 55.082 54.473 55.743 -7.1054E-15 131 43 4 0.729939517616619 0.00389397141654827 0.0316889952303676 2.0141E-05 1 12795 95.206 79.634 3 270140000 19748 24243 21866 25394 17004 24041 26293 27864 27411 5853.2 18695 22908 21854 25981 17675 24216 26348 27978 26999 6156.4 1 1 1 1 1 1 1 1 1 1 27 1434 22 24 35 35 2616 AAEAAPPTQEAQGETEPTEQAPDALEQAADTSR 33 Unmodified _AAEAAPPTQEAQGETEPTEQAPDALEQAADTSR_ 0 0 0 0 Q8N163 Q8N163 Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 903.682189941406 4 845.889471 3379.52878 32857.0396585274 2.0737 0.0017541 67727 57.29 67729 57.292 903.680490224228 61.208 0.55306 61.208 60.951 61.504 0 58 18 5 0.979503091099899 0.00305563768396522 0.0383142817930136 4.3697E-08 2 14348 155.32 142.77 1 23037000 10045 10764 11111 11738 11065 10468 11290 11114 10667 20388 9508.8 10174 11126 11972 11234 10596 11464 11737 10551 19455 2 2 2 2 2 2 2 2 2 2 28 1451 23 25 36;37 36 AAEDDEDDDVDTK 13 Unmodified _AAEDDEDDDVDTK_ 0 0 0 0 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 948.44384765625 2 719.278622 1436.54269 31454.8018094043 2.2816 0.0016411 318600 229.16 318600 229.16 948.441693542323 38.196 2.3211 38.196 37.799 40.12 -7.1054E-15 249 79 6 0.990464923536275 0.00194528328402043 0.0417874908564825 4.1179E-65 2 8607 404.91 338.61 1 630570000 89854 39913 94464 37189 107610 92095 116370 79545 41914 3040 85043 37689 95032 39233 108480 89709 115990 80368 44515 4703.5 2 2 2 2 2 2 2 2 2 2 29 311 24 26 38;39 38 AAEDDEDDDVDTKK 14 Unmodified _AAEDDEDDDVDTKK_ 0 0 0 1 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.050048828125 3 522.553161 1564.63766 36312.7078567798 1.7176 0.00089753 438540 229.16 438550 229.16 751.716395211956 40.154 3.2822 40.154 39.543 42.825 0 326 113 7 0.953143399238707 0.00536545468455502 0.0330327130043784 1.1865E-15 1 9272 224.16 204.91 1 1620700000 76979 41048 86128 39028 98113 79022 100690 74343 43880 8957.7 72876 38765 86352 40839 98841 77381 100810 75022 45706 10155 1 1 1 1 1 1 1 1 1 1 30 311 25 27 40 40 AAEEQGDDQDSEK 13 Unmodified _AAEEQGDDQDSEK_ 0 0 0 0 Q1KMD3 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 940.952087402344 2 711.286782 1420.55901 32506.5333322088 2.0732 0.0014747 322180 229.16 322180 229.16 940.449333544348 28.972 0.32619 28.972 28.808 29.135 3.5527E-15 25 10 3 0.964319401641483 0.000638635682219112 0.0159067906293014 4.6308E-11 1 6456 238.87 209.1 1 8395300 10457 12289 10087 10671 11589 11074 12529 13004 12794 1395.4 9894.1 11599 10198 11062 11685 11109 12716 13011 12612 1614.9 1 1 1 1 1 1 1 1 1 1 31 1118 26 28 41 41 AAESETPGKSPEK 13 Phospho (STY) _AAESETPGKS(ph)PEK_ AAES(0.001)ET(0.013)PGKS(0.986)PEK AAES(-31.95)ET(-18.72)PGKS(18.72)PEK 0 0 1 1 O76021 O76021 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.37548828125 3 470.876461 1409.60755 37710.8814026313 2.6169 0.0012322 486670 229.16 486680 229.16 700.039478636142 38.391 0.62972 38.391 38.154 38.784 0 73 21 5 0.898252287688481 0.00262558730982227 0.0310891997895938 0.010136 1 8739 71.929 43.763 3 155500000 31962 36395 36392 32220 19894 34838 21300 30434 40907 4327.7 30261 34357 36191 33380 21201 34756 22151 30828 39531 4779.4 1 1 1 1 1 1 1 1 1 1 32 210 27 29 42 42 365 AAESPDQK 8 Phospho (STY) _AAES(ph)PDQK_ AAES(1)PDQK AAES(90.1)PDQK 0 0 1 0 P53985 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.348815917969 2 463.186772 924.358992 35970.8392317861 2.4648 0.0011417 494760 229.17 494760 229.17 692.351776062694 31.417 0.35109 31.417 31.21 31.561 0 19 11 2 0.867269195323265 0.00100182902497558 0.0246707893595636 0.0077643 1 7016 90.104 53.41 1 10715000 17930 19799 17761 20646 13736 17976 14107 17622 25222 5168.8 16966 18708 17845 21104 14192 18142 14646 17845 24416 5274.8 1 1 1 1 1 1 1 1 1 1 33 705 28 30 43 43 1183 AAFDDAIAELDTLSEESYK 19 Unmodified _AAFDDAIAELDTLSEESYK_ 0 0 0 0 P62258 P62258 P62258 YWHAE 14-3-3 protein epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.770080566406 3 696.66003 2086.95826 33065.5444062544 1.2641 0.00088067 219300 152.78 219300 152.78 849.768716639865 101.75 0.14145 101.75 101.67 101.82 0 12 4 5 1 0.000390035612726178 0.0182142699665013 0.0020776 1 23952 96.544 79.466 1 79003000 13452 13929 14354 16592 9786.4 12035 13314 16092 10108 55882 12732 13174 14352 16800 10248 12423 13295 17668 10109 52992 1 1 1 1 1 1 1 1 1 1 34 758 29 31 44 44 AAFTTPDHAPLSPQSSVASSGSEQTEEQGSSR 32 Phospho (STY) _AAFTTPDHAPLS(ph)PQSSVASSGSEQTEEQGSSR_ AAFTTPDHAPLS(0.96)PQS(0.039)S(0.002)VASSGSEQTEEQGSSR AAFT(-137.58)T(-129.09)PDHAPLS(13.95)PQS(-13.95)S(-27.8)VAS(-81.11)S(-96.06)GS(-125.1)EQT(-149.94)EEQGS(-186.92)S(-185.64)R 0 0 1 0 Q5PRF9 Q5PRF9 Q5PRF9 SAMD4B Protein Smaug homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1186.20983886719 3 1109.48634 3325.4372 28971.6270101042 1.4271 0.0015833 68849 76.387 68851 76.389 1186.20821310669 59.949 0.5747 59.949 59.649 60.223 0 72 19 5 0.947639515046789 0.0017730589361787 0.011888028294475 7.9022E-35 1 14024 302.79 293.4 11 29752000 1334.3 1419.1 1157.9 1500.5 1769.6 1707.3 1920.9 2166.4 1755.6 16836 1261.9 1341 1183.8 1539.1 1761.6 1739.5 1943.5 2662.6 1739.3 15903 1 1 1 1 1 1 1 1 1 1 35 1174 30 32 45 45 2034 AAFTTPDHAPLSPQSSVASSGSEQTEEQGSSR 32 Phospho (STY) _AAFTTPDHAPLS(ph)PQSSVASSGSEQTEEQGSSR_ AAFTTPDHAPLS(1)PQSSVASSGSEQTEEQGSSR AAFT(-58.49)T(-50.06)PDHAPLS(36.8)PQS(-36.8)S(-68.58)VAS(-112.99)S(-147.69)GS(-178.8)EQT(-241.84)EEQGS(-268.74)S(-272.85)R 0 0 1 0 Q5PRF9 Q5PRF9 Q5PRF9 SAMD4B Protein Smaug homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.911071777344 4 832.366577 3325.4372 33090.7836511228 1.4715 0.0012249 68830 57.292 68831 57.293 889.910191112908 59.941 0.91533 59.941 59.483 60.398 0 113 31 6 0.979067246234731 0.00569517758247194 0.0465179772322809 3.4036E-35 1 14039 314.57 302.21 11 47143000 4646.7 5052.2 5258.8 4961.7 4244.5 4584.3 5143.5 5126.3 6146.5 18728 4399.2 4772.1 5249.4 5094 4380.9 4654 5220 5685.3 6022.2 17753 1 1 1 1 1 1 1 1 1 1 36 1174 30 32 46 46 2034 AAGAAEAAVAAVEEVGSAGQFEELLR 26 Acetyl (Protein N-term) _(ac)AAGAAEAAVAAVEEVGSAGQFEELLR_ 1 0 0 0 O76003 O76003 O76003 GLRX3 Glutaredoxin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.765808105469 3 853.42928 2557.26601 34322.0586831843 1.4905 0.0012721 -0.58184 -0.00049656 0.9087 0.00077551 853.763800624395 103.93 0.16869 103.93 103.83 104 0 15 5 4 0.967616032328582 0.00446486175680024 0.0765245662252721 7.7156E-12 1 24485 103.29 83.887 1 10482000 1581.7 1305.1 1779.3 1119.4 1642.7 1457.1 1239 1501.3 1541.2 10910 1497.4 1231.8 1777.9 1166.2 1669.7 1466.5 1288.9 1832.9 1507.9 10308 1 1 1 1 1 1 1 1 1 1 37 209 31 33 47 47 AAGARPLTSPESLSR 15 Phospho (STY) _AAGARPLTS(ph)PESLSR_ AAGARPLT(0.153)S(0.657)PES(0.153)LS(0.036)R AAGARPLT(-6.32)S(6.32)PES(-6.32)LS(-12.57)R 0 0 1 1 P46379 P46379 P46379 BAG6 Large proline-rich protein BAG6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 911.474609375 2 796.893244 1591.77193 32733.4515641541 1.712 0.0013643 143790 114.58 143790 114.58 911.474054305679 48.943 0.40228 48.943 48.797 49.199 0 24 13 2 1 0.000276947043790098 0.00511164486937163 0.0058609 1 11373 91.076 60.526 4 8072100 18446 18183 19690 19792 14122 18399 13166 18061 21084 9789.6 17459 17186 19685 20201 14653 18519 13665 18424 20468 9636 1 1 1 1 1 1 1 1 1 1 38 609 32 34 48 48 1004 AAGGAPSPPPPVR 13 Phospho (STY) _AAGGAPS(ph)PPPPVR_ AAGGAPS(1)PPPPVR AAGGAPS(117.63)PPPPVR 0 0 1 0 Q4KMP7 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.888977050781 2 627.305545 1252.59654 36233.518351461 2.0721 0.0012999 182660 114.58 182660 114.58 741.887355640842 42.115 1.3983 42.115 41.368 42.766 0 131 48 4 0.972861783136855 0.00135038726246977 0.0364506112878738 0.00016131 1 9577 117.63 75.925 1 21052000 20190 19980 21881 22929 17628 18963 16609 19421 25009 7521.9 19112 18892 21882 23299 18134 19204 17185 19690 24320 7532.2 1 1 1 1 1 1 1 1 1 1 39 1139 33 35 49 49 1982 AAGISLIVPGKSPTR 15 Phospho (STY) _AAGISLIVPGKSPT(ph)R_ AAGISLIVPGKS(0.374)PT(0.626)R AAGIS(-88.58)LIVPGKS(-2.23)PT(2.23)R 0 0 1 1 P47736 P47736 P47736 RAP1GAP Rap1 GTPase-activating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.059265136719 3 516.283274 1545.82799 38904.7676862484 2.0197 0.0010427 295910 152.78 295920 152.78 669.058416262215 78.657 0.58253 78.657 78.374 78.956 -1.4211E-14 74 19 5 0.961547713764906 0.00307311204281332 0.0467756333309411 1.4344E-05 1 18406 137.61 112.08 3 56132000 5652.4 18372 5479.6 17710 5291.7 5771.9 6087.4 9458.4 17346 6981.4 5348 17352 5526.8 18032 5403 6377.7 6466.6 9554.9 16638 6792.8 1 1 1 1 1 1 1 1 1 1 40 619 34 36 50 50 4467 AAGSPSPLPAPDPAPK 16 Phospho (STY) _AAGS(ph)PSPLPAPDPAPK_ AAGS(0.731)PS(0.269)PLPAPDPAPK AAGS(4.35)PS(-4.35)PLPAPDPAPK 0 0 1 0 Q9BZE9 Q9BZE9 Q9BZE9 ASPSCR1 Tether containing UBX domain for GLUT4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.362548828125 3 518.251751 1551.73342 38490.8935570205 2.085 0.0010805 294790 152.78 294790 152.78 671.362439739335 61.948 0.58608 61.948 61.65 62.237 7.1054E-15 51 19 3 0.911988615948069 0.00341241389323564 0.0281830138436045 0.00080544 1 14547 99.496 85.817 2 30166000 13813 14729 16899 15198 17152 13612 14832 15664 16971 10119 13083 13917 16837 15551 17360 13760 15268 15937 16654 9890.8 1 1 1 1 1 1 1 1 1 1 41 1877 35 37 51 51 3416 AAGTAAALAFLSQESR 16 Acetyl (Protein N-term),Phospho (STY) _(ac)AAGTAAALAFLS(ph)QESR_ AAGTAAALAFLS(1)QESR AAGT(-130.68)AAALAFLS(34.24)QES(-34.24)R 1 0 1 0 O75607 O75607 O75607 NPM3 Nucleoplasmin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.399169921875 2 843.398359 1684.78217 34022.5746640365 1.0341 0.00087216 -0.4683 -0.00039496 0.56581 0.0004772 843.398277362484 101.2 0.4316 101.2 101.01 101.44 1.4211E-14 34 14 4 0.874462909157602 0.00793266782273972 0.433042025774264 1.9768E-42 1 23762 233.31 211.87 3 139370000 8719.1 10415 11049 6909.2 13971 9195.5 13730 11786 8780.4 64939 8259.2 9818.9 11027 7344.9 13997 9269.8 13852 13678 8873.6 61421 1 1 1 1 1 1 1 1 1 1 42 195 36 38 52 52 342 AAHTEDINACTLTTSPR 17 Phospho (STY) _AAHTEDINACTLTTS(ph)PR_ AAHTEDINACT(0.001)LT(0.001)T(0.013)S(0.986)PR AAHT(-103.43)EDINACT(-32.1)LT(-29.49)T(-18.91)S(18.91)PR 0 0 1 0 P04049 P04049 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.34228515625 3 646.618945 1936.83501 37113.0318902433 0.64549 0.00041739 118130 76.388 118130 76.388 723.34037887744 47.247 0.60199 47.247 46.771 47.373 0 43 22 3 0.816556600726008 0.00128993926935565 0.00314794314294718 1.4284E-07 1 10941 163.41 146.13 5 63996000 14739 14176 14948 14010 13973 13586 13359 15149 12397 9848.1 13948 13391 15026 14389 14228 13675 13602 15432 12273 9623.8 1 1 1 1 1 1 1 1 1 1 43 288 37 39 53 53 479 AAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHK 35 Oxidation (M),Phospho (STY) _AAIPPPVYEEQDRPRS(ph)PTGPSNSFLANM(ox)GGTVAHK_ AAIPPPVYEEQDRPRSPTGPSNSFLANM(1)GGTVAHK AAIPPPVYEEQDRPRS(0.995)PT(0.005)GPSNSFLANMGGTVAHK AAIPPPVYEEQDRPRSPTGPSNSFLANM(222.38)GGTVAHK AAIPPPVY(-84.36)EEQDRPRS(22.91)PT(-22.91)GPS(-41.72)NS(-60.15)FLANMGGT(-158.16)VAHK 0 1 1 2 Q96I25 Q96I25 Q96I25 RBM17 Splicing factor 45 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 850.229309082031 5 758.363781 3786.78252 34402.0568644445 1.8224 0.001382 120870 91.664 120870 91.666 850.430128585862 67.821 1.1694 67.821 67.357 68.527 -1.4211E-14 126 39 5 0.94464094314187 0.00294054914832028 0.0245511150138901 4.6908E-18 1 15932 222.38 199 6 17757000 5134 8677.6 5729.2 7572.4 4840.3 5558 8900.7 8189.5 9396.1 14207 4860.3 8191.2 5731.5 7810.2 5022.3 5720.7 8878.7 8540.8 9250.1 13567 1 1 1 1 1 1 1 1 1 1 44 1691 38 40 54 54 198 3107 AAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHK 35 Phospho (STY) _AAIPPPVYEEQDRPRS(ph)PTGPSNSFLANMGGTVAHK_ AAIPPPVY(0.161)EEQDRPRS(0.644)PT(0.145)GPS(0.027)NS(0.022)FLANMGGTVAHK AAIPPPVY(-6.02)EEQDRPRS(6.02)PT(-6.48)GPS(-13.77)NS(-14.63)FLANMGGT(-60.24)VAHK 0 0 1 2 Q96I25 Q96I25 Q96I25 RBM17 Splicing factor 45 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.432800292969 5 755.164798 3770.78761 34074.5996006042 1.6024 0.0012101 121380 91.666 121390 91.667 847.231335109946 80.489 1.4883 80.489 79.989 81.477 0 124 50 4 0.709152093331031 0.00450677705545741 0.0565694689270111 0.0007454 1 18846 96.963 79.173 6 60165000 8982.3 12140 10686 12504 9319.1 13041 13497 13579 15974 12080 8505.9 11470 10653 12825 9599.1 13077 13606 13964 15657 11689 1 1 1 1 1 1 1 1 1 1 45 1691 38 41 55 55 3107 AAKNSEEEEEEK 12 Phospho (STY) _AAKNS(ph)EEEEEEK_ AAKNS(1)EEEEEEK AAKNS(183.6)EEEEEEK 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.695922851563 3 491.531131 1471.57156 37153.88268373 1.7104 0.00084073 466220 229.16 466220 229.16 720.694562170764 34.957 1.2797 34.957 34.746 36.026 -7.1054E-15 118 43 5 0.98901488209768 0.00515436670569491 0.0875187613040941 6.2914E-11 1 7830 183.6 122.37 1 76007000 33310 35993 28210 34500 39034 28808 39598 33190 34112 25110 31500 33993 28833 35423 38976 29232 40130 33879 33891 24413 1 1 1 1 1 1 1 1 1 1 46 1035 39 42 56 56 1777 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 Phospho (STY) _AAKPGPAEAPSPTASPSGDAS(ph)PPATAPYDPR_ AAKPGPAEAPSPTASPS(0.016)GDAS(0.984)PPATAPYDPR AAKPGPAEAPS(-54.56)PT(-49.1)AS(-36.7)PS(-17.99)GDAS(17.99)PPAT(-47.93)APY(-72.32)DPR 0 0 1 1 Q9UPT8 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 868.683898925781 4 753.600016 3010.37096 33522.1114634449 1.2338 0.00092977 152050 114.58 152050 114.58 868.431926330838 55.613 0.49419 55.613 55.307 55.801 0 62 16 5 0.96966160466548 0.0024954780734396 0.0242444213745859 1.3862E-07 1 12955 147.49 134.25 7 20958000 6590.3 5919.3 7086 6383.3 7814 6860 8082.5 6810.4 5757.5 27860 6238 5594.4 7116.1 6533.5 7888.3 6906.7 8150.7 7672.7 5779.5 26391 1 1 1 1 1 1 1 1 1 1 47 2219 40 43 57 57 4014 AAKSPAK 7 Phospho (STY) _AAKS(ph)PAK_ AAKS(1)PAK AAKS(47.33)PAK 0 0 1 1 P16402 P16402 P16402 HIST1H1D Histone H1.3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.624603271484 3 251.461595 751.362955 44809.557557742 1.3233 0.00033276 911320 229.16 911320 229.16 480.624345908076 31.645 0.75864 31.645 31.239 31.998 0 58 25 3 0.85773863882085 0.00357711466578683 0.0269051796656549 0.034244 1 7060 47.334 11.017 1 44017000 28002 40525 28353 38530 20253 25888 21294 27748 39273 3549.4 26498 38271 28432 39480 21063 26543 22118 27868 37988 3984.3 1 1 1 1 1 1 1 1 1 1 48 408 41 44 58 58 653 AALAPAKESPR 11 Phospho (STY) _AALAPAKES(ph)PR_ AALAPAKES(1)PR AALAPAKES(138.19)PR 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.963928222656 2 595.800095 1189.58564 34626.6054543802 2.2539 0.0013429 384630 229.16 384630 229.16 824.962324791621 43.12 0.49867 43.12 42.911 43.41 0 52 16 4 0.716030577900446 0.00321715577498223 0.0718723481716494 4.7722E-06 1 9865 138.19 123.22 1 82660000 82734 111870 70555 116400 52075 70581 53227 76200 118550 5514.5 78242 105710 71521 118510 54015 72873 55913 76382 114200 6956.1 1 1 1 1 1 1 1 1 1 1 49 953 42 45 59 59 1592 AALHTTPDSPAAQLER 16 Acetyl (Protein N-term),Phospho (STY) _(ac)AALHTTPDS(ph)PAAQLER_ AALHT(0.007)T(0.17)PDS(0.823)PAAQLER AALHT(-20.69)T(-6.86)PDS(6.86)PAAQLER 1 0 1 0 A6NFI3 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 900.422973632813 2 900.419823 1798.82509 29886.5141228669 1.3284 0.0011961 -1.8364 -0.0016535 -0.50799 -0.0004574 900.418039367528 55.999 0.38731 55.999 55.861 56.249 0 30 12 3 0.774592440522589 0.00132641550641451 0.0266893509837864 6.4518E-16 2 13088 125.86 99.922 3 17526000 22248 18976 22729 19110 21282 22871 20109 26669 22028 239390 21054 17927 22840 19674 21668 23255 20578 33817 21653 226040 2 2 2 2 2 2 2 2 2 2 50 8 43 46 60;61 60 18 AALLKASPK 9 Phospho (STY) _AALLKAS(ph)PK_ AALLKAS(1)PK AALLKAS(78.53)PK 0 0 1 1 P50914 P50914 P50914 RPL14 60S ribosomal protein L14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.014465332031 3 326.850971 977.531083 42325.317901429 1.5466 0.00050551 701120 229.16 701130 229.16 556.014307322188 61.607 1.5718 61.607 61.218 62.79 0 186 53 6 0.996622295138662 0.0139476200473377 0.356819796687313 0.0071264 1 14402 78.529 43.641 1 613530000 62226 63491 64385 60989 32494 55108 37387 51113 60306 2932.8 58889 59964 64327 62680 34949 55456 38450 51513 58532 3944.5 1 1 1 1 1 1 1 1 1 1 51 670 44 47 62 62 1127 AALSEEELEKK 11 Phospho (STY) _AALS(ph)EEELEKK_ AALS(1)EEELEKK AALS(57.47)EEELEKK 0 0 1 1 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.044555664063 3 442.877802 1325.61158 37181.8543826387 2.3747 0.0010517 517440 229.16 517450 229.17 672.376181485371 61.842 0.41466 61.842 61.621 62.036 0 32 13 4 0.626173044358236 0.00235300929023432 0.0247947344078356 0.024087 1 14518 57.475 44.943 1 19345000 13613 34276 15865 28738 21544 18141 20701 23943 31310 8981.4 12890 32348 15913 29675 21526 18747 21403 24063 30444 9011.2 1 1 1 1 1 1 1 1 1 1 52 861 45 48 63 63 1391 AAMYDIISSPSK 12 Phospho (STY) _AAMYDIISS(ph)PSK_ AAMYDIIS(0.027)S(0.973)PSK AAMY(-83.1)DIIS(-15.52)S(15.52)PS(-39.82)K 0 0 1 0 Q6KC79 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 607.6484375 3 454.871883 1361.59382 40696.4904603672 1.1866 0.00053977 335860 152.78 335870 152.78 607.647493013881 81.067 0.55323 81.067 80.782 81.335 -1.4211E-14 48 18 4 0.982933601721835 0.00234259282087173 0.0532523491363723 7.4224E-05 1 18977 120.53 101.2 4 12752000 5649.1 6166.9 5597.6 6010.8 5005.4 6003.7 4835 5930.6 6778.5 5927.8 5345.3 5824.7 5631.8 6181.1 5113.9 6028.4 4983 6130.3 6605.9 5719 1 1 1 1 1 1 1 1 1 1 53 1244 46 49 64 64 2200;2201 AAMYDIISSPSKDSTK 16 Phospho (STY) _AAMYDIIS(ph)SPSKDSTK_ AAMYDIIS(0.595)S(0.351)PS(0.054)KDSTK AAMY(-113.52)DIIS(2.29)S(-2.29)PS(-10.45)KDS(-52.3)T(-60.02)K 0 0 1 1 Q6KC79 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.107116699219 3 598.605754 1792.79543 33813.2027984011 2.0694 0.0012388 382830 229.16 382830 229.17 828.10509991753 75.72 0.57423 75.72 75.4 75.975 0 65 19 5 0.94366119311168 0.00488357495542996 0.033546946555601 7.0192E-08 1 17773 171.68 145.55 6 28529000 22550 26154 24311 25082 17855 25697 22202 26842 26588 20281 21345 24700 24308 25829 18566 25783 22511 27492 26049 19718 1 1 1 1 1 1 1 1 1 1 54 1244 47 50 65 65 2200;2201 AAPCGSELPANSPLKIPK 18 Acetyl (Protein N-term),Phospho (STY) _(ac)AAPCGSELPANS(ph)PLKIPK_ AAPCGSELPANS(1)PLKIPK AAPCGS(-75.43)ELPANS(75.43)PLKIPK 1 0 1 1 Q6P1R3 Q6P1R3 Q6P1R3 MSANTD2 Myb/SANT-like DNA-binding domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 810.770690917969 3 657.991831 1970.95366 36300.0684980191 2.0617 0.0013566 232190 152.78 232190 152.78 810.770609164084 78.143 0.36772 78.143 77.979 78.347 0 36 12 4 0.692139981377212 0.000809818778400862 0.0206511624365768 3.335E-08 1 18331 171.39 157.73 2 10483000 9708.7 8608.2 11158 8749.2 8397.4 10251 7701 8306.3 9422 12669 9192.3 8132.6 11117 8998.9 8676.4 10208 7919.5 8789 9223.7 12122 1 1 1 1 1 1 1 1 1 1 55 1256 48 51 66 66 2227 AAPEASSPPASPLQHLLPGK 20 Phospho (STY) _AAPEASS(ph)PPASPLQHLLPGK_ AAPEAS(0.138)S(0.862)PPASPLQHLLPGK AAPEAS(-7.97)S(7.97)PPAS(-43.75)PLQHLLPGK 0 0 1 0 Q96TA1 Q96TA1 Q96TA1 FAM129B Niban-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 836.122497558594 3 683.345262 2047.01396 35391.3267029976 1.8497 0.001264 223570 152.77 223570 152.78 836.454723181942 87.39 0.88027 87.39 87.028 87.908 -1.4211E-14 68 29 3 0.975018893441732 0.00146344972861981 0.0174420701157277 1.0193E-11 1 20389 205.43 182.9 3 15507000 6065.6 8502.1 6449.6 7934.7 9439.2 7775.6 15097 10996 6990.5 28431 5741 8028.4 6519.6 8179.2 9474.8 7894.8 14874 11761 7241.3 27025 1 1 1 1 1 1 1 1 1 1 56 1759 49 52 67 67 3243;3244;3245 AAPEASSPPASPLQHLLPGK 20 2 Phospho (STY) _AAPEAS(ph)SPPAS(ph)PLQHLLPGK_ AAPEAS(0.565)S(0.482)PPAS(0.953)PLQHLLPGK AAPEAS(0.76)S(-0.76)PPAS(10.43)PLQHLLPGK 0 0 2 0 Q96TA1 Q96TA1 Q96TA1 FAM129B Niban-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.83740234375 4 532.752348 2126.98029 39322.0677506787 1.7271 0.00092009 215070 114.58 215080 114.58 647.33301281839 89.501 1.6259 89.501 88.794 90.42 -1.4211E-14 166 55 4 0.512883576268451 0.00129279063783461 0.00914569457312011 0.044635 1 20904 49.25 39.835 3 15495000 4475.8 3304.1 3620.3 4469.8 4058.7 4391.6 5003.1 4858.2 4785.9 4636.9 4232 3127.9 3701.8 4517 4106.1 4420 5041.4 4994.7 4731.5 4478.6 1 1 1 1 1 1 1 1 1 1 57 1759 49 53 68 68 3243;3244;3245 AAPEASSPPASPLQHLLPGK 20 2 Phospho (STY) _AAPEASS(ph)PPAS(ph)PLQHLLPGK_ AAPEAS(0.441)S(0.559)PPAS(1)PLQHLLPGK AAPEAS(-1.03)S(1.03)PPAS(45.11)PLQHLLPGK 0 0 2 0 Q96TA1 Q96TA1 Q96TA1 FAM129B Niban-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.775268554688 3 710.000705 2126.98029 32880.9014321983 1.7802 0.001264 215180 152.77 215180 152.78 863.443398725122 89.318 1.8539 89.318 88.735 90.589 0 187 63 4 0.968692292636614 0.00143676908013535 0.0646552868075664 1.9424E-05 1 21066 131.32 107.99 3 33937000 5601.2 6008.9 5839 6907.3 6046.1 7056.8 6226 7444.2 6867.3 16514 5301.1 5681.5 5868.7 7039.8 6126.5 7102.7 6346.4 7949.7 6748.7 15722 1 1 1 1 1 1 1 1 1 1 58 1759 49 53 69 69 3243;3244;3245 AAPPPPALTPDSQTVDSSCK 20 Phospho (STY) _AAPPPPALT(ph)PDSQTVDSSCK_ AAPPPPALT(1)PDSQTVDSSCK AAPPPPALT(47.3)PDS(-47.3)QT(-96.01)VDS(-136.24)S(-142.39)CK 0 0 1 0 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.095581054688 3 706.985293 2117.93405 33350.5980261987 1.5455 0.0010927 216100 152.78 216100 152.78 860.096031210414 58.935 0.81499 58.935 58.463 59.278 7.1054E-15 97 27 5 0.939251685504859 0.00307312819323926 0.0309770469252722 4.3206E-16 2 13789 226.71 209.49 5 20491000 21903 20008 22507 20773 19134 23663 20531 22685 20712 19661 20728 18905 22590 21329 19636 23614 20836 23385 20429 19038 2 2 2 2 2 2 2 2 2 2 59 1953 50 54 70;71 70 4766 AAPPPPPPPPPLESSPR 17 Phospho (STY) _AAPPPPPPPPPLES(ph)SPR_ AAPPPPPPPPPLES(0.653)S(0.347)PR AAPPPPPPPPPLES(2.74)S(-2.74)PR 0 0 1 0 Q5T4S7 Q5T4S7 Q5T4S7 UBR4 E3 ubiquitin-protein ligase UBR4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.020324707031 3 595.297472 1782.87059 37697.2176321339 1.6709 0.00099468 128320 76.388 128320 76.389 672.019352995088 60.077 2.1381 60.077 59.483 61.621 0 247 73 5 0.904473731238653 0.0117545770735878 0.123997483983444 7.6982E-05 1 14060 109.66 96.735 2 71388000 12279 14755 11209 15111 11285 9885.3 12669 13135 14934 15994 11615 13941 11352 15410 11469 10213 12892 13532 14639 15364 1 1 1 1 1 1 1 1 1 1 60 1184 51 55 72 72 2071 AAPQSPSVPK 10 Phospho (STY) _AAPQS(ph)PSVPK_ AAPQS(0.996)PS(0.004)VPK AAPQS(23.97)PS(-23.97)VPK 0 0 1 0 O75694 O75694 O75694 NUP155 Nuclear pore complex protein Nup155 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 507.280914306641 3 354.505752 1060.49543 43838.8419956264 1.0781 0.00038218 430950 152.78 430950 152.78 507.281248707265 45.177 0.51844 45.177 44.889 45.407 7.1054E-15 58 17 4 0.936060788904136 0.00547134052121425 0.0879447850006544 0.00021924 1 10358 108.32 79.366 2 87541000 15268 16656 14783 16880 11535 12658 12304 13654 15226 2182.5 14445 15736 14875 17250 11912 12893 12568 13723 14899 2371.1 1 1 1 1 1 1 1 1 1 1 61 201 52 56 73 73 351 AAPTRGSPTK 10 Phospho (STY) _AAPTRGS(ph)PTK_ AAPT(0.005)RGS(0.934)PT(0.061)K AAPT(-22.43)RGS(11.86)PT(-11.86)K 0 0 1 1 Q8IYH5 Q8IYH5 Q8IYH5 ZZZ3 ZZ-type zinc finger-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 508.616821289063 3 355.841134 1064.50157 43123.8061070542 1.6896 0.00060125 429340 152.78 429340 152.78 508.616400041876 28.271 0.40189 28.271 28.063 28.465 -3.5527E-15 33 13 3 0.941630326343931 0.00498905779139641 0.0910038995747688 0.010979 1 6286 65.809 42.433 3 21297000 13745 13446 14520 12987 15038 13949 15691 13328 13779 2284.8 13009 12699 14584 13378 15238 13935 15888 13462 13677 2459.9 1 1 1 1 1 1 1 1 1 1 62 1437 53 57 74 74 2665 AAPTTPPPPVK 11 Phospho (STY) _AAPTT(ph)PPPPVK_ AAPT(0.048)T(0.952)PPPPVK AAPT(-13)T(13)PPPPVK 0 0 1 0 Q9NZQ3 Q9NZQ3 Q9NZQ3 NCKIPSD NCK-interacting protein with SH3 domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.641357421875 3 385.865168 1154.57368 43121.7040822283 1.3969 0.000539 395930 152.78 395930 152.78 538.640597193329 49.898 1.0133 49.898 49.199 50.212 0 72 34 3 0.844834373715509 0.00249971821536008 0.0700416899972487 0.012893 1 11569 75.89 50.153 2 14994000 11637 9811.9 10677 11290 11525 12076 11948 10963 11679 2103.4 11008 9277.4 10817 11515 11651 12059 12134 11103 11535 2234.4 1 1 1 1 1 1 1 1 1 1 63 2087 54 58 75 75 4792 AAQAGSLEISK 11 Phospho (STY) _AAQAGS(ph)LEISK_ AAQAGS(0.998)LEIS(0.002)K AAQAGS(27.1)LEIS(-27.1)K 0 0 1 0 Q9BV73 Q9BV73 Q9BV73 CEP250 Centrosome-associated protein CEP250 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.443359375 2 577.776286 1153.53802 35538.0637561768 2.3275 0.0013448 396630 229.16 396630 229.16 807.440732429634 58.609 0.49594 58.609 58.321 58.817 0 35 16 3 0.640384851015721 0.000389291237929503 0.00847512884756758 0.053217 1 13752 49.333 28.386 2 13630000 19006 14747 19813 16814 15751 19886 14659 18081 16369 26999 17988 13943 19852 17187 16210 19823 15021 19020 16079 25841 1 1 1 1 1 1 1 1 1 1 64 1839 55 59 76 76 3367 AAQDFFSTCRSPEACCELTLQPLR 24 Phospho (STY) _AAQDFFSTCRS(ph)PEACCELTLQPLR_ AAQDFFS(0.097)T(0.097)CRS(0.806)PEACCELTLQPLR AAQDFFS(-9.19)T(-9.19)CRS(9.19)PEACCELT(-47.04)LQPLR 0 0 1 1 P06132 P06132 P06132 UROD Uroporphyrinogen decarboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1056.48425292969 3 979.762493 2936.26565 30872.3334251743 1.8442 0.0018068 77964 76.386 77966 76.388 1056.48167692604 90.358 0.57642 90.358 89.927 90.503 -1.4211E-14 48 19 5 0.549070588455511 0.00143236720300243 0.048379473306336 0.013247 1 21074 66.677 47.299 4 10543000 2171.8 4060.8 2051.6 4706.1 3651.5 2842.6 3889.3 4218.2 3384 45446 2054.6 3839.7 2092.8 4762.7 3614 3035.3 3933.7 5547.2 3360.4 42891 1 1 1 1 1 1 1 1 1 1 65 308 56 60 77 77 506 AAQGAAAAVAAGTSGVAGEGEPGPGENAAAEGTAPSPGRVSPPTPAR 47 Acetyl (Protein N-term),Phospho (STY) _(ac)AAQGAAAAVAAGTSGVAGEGEPGPGENAAAEGTAPSPGRVS(ph)PPTPAR_ AAQGAAAAVAAGTSGVAGEGEPGPGENAAAEGTAPS(0.027)PGRVS(0.754)PPT(0.219)PAR AAQGAAAAVAAGT(-180.4)S(-173.6)GVAGEGEPGPGENAAAEGT(-39.02)APS(-14.51)PGRVS(5.36)PPT(-5.36)PAR 1 0 1 1 Q9H7Z6 Q9H7Z6 Q9H7Z6 KAT8 Histone acetyltransferase KAT8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1066.00866699219 4 1065.75429 4258.98804 30111.8912189308 1.6199 0.0017264 -0.40378 -0.00043033 1.2162 0.0012961 1066.50576957751 71.245 0.8682 71.245 70.768 71.636 0 154 29 7 0.977714836519712 0.00425138520828086 0.0412923426962669 1.9075E-36 1 16679 216.49 190.7 6 67445000 1644.4 1768.4 1390 685.14 1262.6 1687.9 1309.7 1460.9 1666.4 10854 1555.1 1664.4 1412.8 785.7 1289.8 1664.7 1340.7 1801.2 1629.1 10254 1 1 1 1 1 1 1 1 1 1 66 1954 57 61 78 78 3560 AASAAAASAAAASAASGSPGPGEGSAGGEK 30 Acetyl (Protein N-term),Phospho (STY) _(ac)AASAAAASAAAASAASGS(ph)PGPGEGSAGGEK_ AASAAAASAAAASAASGS(0.999)PGPGEGS(0.001)AGGEK AAS(-157.97)AAAAS(-132.46)AAAAS(-85.26)AAS(-38.36)GS(31.91)PGPGEGS(-31.91)AGGEK 1 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 913.755249023438 3 837.032799 2508.07657 32639.2788064059 1.8249 0.0015275 91261 76.388 91263 76.39 913.755501596161 63.703 1.0428 63.703 63.285 64.328 7.1054E-15 182 35 7 0.990951691411968 0.0209549044635556 0.117894076550978 3.0734E-45 1 14906 215.82 192.82 6 910340000 10123 12052 10777 11911 14588 12033 13033 14015 13428 58635 9581.7 11385 10858 12241 14557 12191 13352 15748 13232 55536 1 1 1 1 1 1 1 1 1 1 67 942 58 62 79 79 1557 AASAAAASAAAASAASGSPGPGEGSAGGEKR 31 Acetyl (Protein N-term),Phospho (STY) _(ac)AASAAAASAAAASAASGS(ph)PGPGEGSAGGEKR_ AASAAAASAAAASAASGS(1)PGPGEGSAGGEKR AAS(-106.14)AAAAS(-111.03)AAAAS(-63.31)AAS(-33.15)GS(33.15)PGPGEGS(-70.15)AGGEKR 1 0 1 1 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 965.45556640625 3 889.066503 2664.17768 31784.6053635619 1.4824 0.0013179 85919 76.388 85921 76.389 965.788908446573 58.181 1.3148 58.181 57.732 59.047 0 219 44 8 0.987914776665931 0.00371416442057783 0.0299369285900779 3.3056E-35 1 13545 207.53 183.07 6 1392000000 7408.4 8845.5 8094.9 9143.4 11446 8279 10946 9465.9 9297.2 9861 7012.8 8357.7 8151.7 9356.1 11409 8370.5 11121 9746.1 9243.5 9504.4 1 1 1 1 1 1 1 1 1 1 68 942 59 63 80 80 1557 AASADSTTEGTPADGFTVLSTK 22 Phospho (STY) _AASADS(ph)TTEGTPADGFTVLSTK_ AAS(0.124)ADS(0.73)T(0.124)T(0.022)EGTPADGFTVLSTK AAS(-7.69)ADS(7.69)T(-7.69)T(-15.31)EGT(-80.02)PADGFT(-179.01)VLS(-191.36)T(-193.61)K 0 0 1 0 O75367 O75367 O75367 H2AFY Core histone macro-H2A.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.106323242188 3 736.329894 2205.96785 33914.4550585146 1.8055 0.0013294 207480 152.78 207480 152.78 889.439870432485 82.816 0.54332 82.816 82.572 83.115 0 53 18 4 0.964086330480023 0.00164541472191965 0.00980217387695147 4.4158E-12 1 19382 198.56 177.62 8 7417300 5219 4380.5 5250.8 4832.6 6549.5 6074.4 8117 6089.4 5465.9 14991 4938.6 4140.7 5304.3 4954.3 6589.4 6061.7 8114.5 6559.2 5505.7 14256 1 1 1 1 1 1 1 1 1 1 69 178 60 64 81 81 308 AASAIYSGYIFDYDYYR 17 Phospho (STY) _AAS(ph)AIYSGYIFDYDYYR_ AAS(0.969)AIYS(0.031)GYIFDYDYYR AAS(14.99)AIY(-95.53)S(-14.99)GY(-135.16)IFDY(-124.39)DY(-127.66)Y(-150.14)R 0 0 1 0 Q9UKM9 Q9UKM9 Q9UKM9 RALY RNA-binding protein Raly MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1174.53295898438 2 1059.44825 2116.88194 28961.5106525185 1.5559 0.0016484 108150 114.58 108150 114.58 1174.53100480363 100.72 0.11154 100.72 100.67 100.78 1.4211E-14 10 3 4 0.982134775580066 0.00237698692137768 0.0691408804976811 3.9289E-32 1 23591 323.02 296.87 7 72140000 10512 12910 12663 11841 16049 14593 21937 17581 16090 290990 9955.5 12190 12680 12267 16164 15090 21887 26287 16124 274410 1 1 1 1 1 1 1 1 1 1 70 2177 61 65 82 82 3925 AASALLLR 8 Phospho (STY) _AAS(ph)ALLLR_ AAS(1)ALLLR AAS(122.94)ALLLR 0 0 1 0 Q9H1K1 Q9H1K1 Q9H1K1 ISCU Iron-sulfur cluster assembly enzyme ISCU, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 562.326904296875 2 447.74406 893.473568 41194.3060224954 1.754 0.00078532 255910 114.58 255910 114.58 562.325860985426 74.612 0.61523 74.612 74.33 74.945 0 55 20 4 0.948853035214345 0.00481803595243964 0.206136477468911 0.00068498 1 17520 122.94 29.29 1 28653000 4714.1 25833 5177.6 24917 18986 3999.7 18202 15990 27841 3423.9 4462.5 24398 5354.5 25304 18449 5099.5 18829 15678 27062 3594.1 1 1 1 1 1 1 1 1 1 1 71 1915 62 66 83 83 3479 AASAPAKESPR 11 Phospho (STY) _AASAPAKES(ph)PR_ AASAPAKES(1)PR AAS(-42.51)APAKES(42.51)PR 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 541.624877929688 3 388.85181 1163.5336 41107.1908827266 1.2712 0.0004943 392890 152.78 392890 152.78 541.626922711998 29.443 0.32644 29.443 29.28 29.606 3.5527E-15 49 10 6 0.921625491221898 0.054443870175619 0.639947689441513 0.0087757 1 6548 73.722 42.108 2 601000000 185860 318660 190580 285540 155260 199480 169230 217330 336800 461.09 175890 300840 191230 293830 160000 204010 176180 217320 325210 5464 1 1 1 1 1 1 1 1 1 1 72 953 63 67 84 84 1593 AASAPAKESPR 11 Phospho (STY) _AASAPAKES(ph)PR_ AASAPAKES(1)PR AAS(-76.97)APAKES(76.97)PR 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.944030761719 2 582.774077 1163.5336 33883.3958938845 2.1162 0.0012333 393230 229.17 393230 229.17 811.939604508202 29.445 0.32644 29.445 29.28 29.606 -3.5527E-15 34 10 4 0.964271695682097 0.00317403241224049 0.0666442413142855 6.161E-07 1 6549 157.97 114.37 2 72392000 37718 65758 40409 63094 30826 36847 32924 42638 68873 2928.8 35701 62104 40422 64524 31912 38183 34398 42633 66433 3744.6 1 1 1 1 1 1 1 1 1 1 73 953 63 67 85 85 1593 AASAPAKESPRK 12 Phospho (STY) _AASAPAKES(ph)PRK_ AAS(0.002)APAKES(0.998)PRK AAS(-27.83)APAKES(27.83)PRK 0 0 1 2 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.713684082031 3 431.550131 1291.62856 38698.7665717167 2.3471 0.0010129 531020 229.16 531020 229.16 661.047481742398 32.264 0.4442 32.264 31.998 32.442 -7.1054E-15 38 14 3 0.929191252104513 0.0027557745255362 0.0239020010034565 0.016354 1 7220 70.784 49.533 2 19796000 18328 24619 17465 23097 13776 15180 13154 20957 27183 3183.7 17339 23248 17590 23681 14202 15647 13804 20893 26227 3482.9 1 1 1 1 1 1 1 1 1 1 74 953 64 68 86 86 1593 AASDPLLSSVSPAVSK 16 Phospho (STY) _AASDPLLSSVS(ph)PAVSK_ AASDPLLSSVS(1)PAVSK AAS(-120.1)DPLLS(-58.72)S(-36.76)VS(36.76)PAVS(-78.67)K 0 0 1 0 P19532 P19532 P19532 TFE3 Transcription factor E3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.710693359375 3 536.934199 1607.78077 37654.1709713315 1.9801 0.0010632 284530 152.78 284540 152.78 690.044151930296 78.397 0.65644 78.397 77.951 78.607 0 59 22 4 0.848035977387988 0.00279418615628943 0.114982163938948 1.2521E-10 1 18355 183.56 155.26 5 16595000 7395.7 10864 7366.6 11624 5890.9 7624.1 6709.9 6348.6 12867 7647.6 6998.1 10267 7402.9 11824 6082.7 7818.9 6959.4 6648 12435 7348.1 1 1 1 1 1 1 1 1 1 1 75 440 65 69 87 87 716 AASENSQDALR 11 Phospho (STY) _AASENS(ph)QDALR_ AASENS(1)QDALR AAS(-56.06)ENS(56.06)QDALR 0 0 1 0 Q13422 Q13422 Q13422 IKZF1 DNA-binding protein Ikaros MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.844848632813 2 621.261531 1240.50851 36175.2693491133 1.8798 0.0011678 184430 114.58 184430 114.58 735.842250135101 32.609 0.46788 32.609 32.384 32.852 -7.1054E-15 34 15 3 0.991905771006545 0.00126979307108527 0.027879571445218 3.7797E-10 1 7277 191.69 124.7 2 15289000 18252 11781 18140 13895 13136 18530 13332 16174 12715 3681.9 17271 11141 18211 14212 13628 18344 13544 16426 12572 3841.3 1 1 1 1 1 1 1 1 1 1 76 950 66 70 88 88 1579;1580 AASENSQDALR 11 Phospho (STY) _AAS(ph)ENSQDALR_ AAS(0.999)ENS(0.001)QDALR AAS(28.78)ENS(-28.78)QDALR 0 0 1 0 Q13422 Q13422 Q13422 IKZF1 DNA-binding protein Ikaros MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.844787597656 2 621.261531 1240.50851 37658.9279373521 1.8309 0.0011375 184430 114.58 184440 114.58 735.843225432912 33.862 0.55572 33.862 33.467 34.022 0 30 18 3 0.648903772398778 0.000391633264217473 0.00831856360020095 0.00019618 1 7597 113.86 68.748 2 6714800 16339 13060 17086 10678 15761 16918 11863 14903 12562 3726.8 15464 12324 17138 11209 16018 16661 12282 15139 12365 3854.1 1 1 1 1 1 1 1 1 1 1 77 950 66 70 89 89 1579;1580 AASGEAKPK 9 Unmodified _AASGEAKPK_ 0 0 0 1 P16403;P10412;P16401 P16403;P10412;P16401 P16401 HIST1H1C;HIST1H1E;HIST1H1B Histone H1.2;Histone H1.4;Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 515.990478515625 3 286.827504 857.460681 44820.8549816878 1.6722 0.00047964 798960 229.16 798960 229.16 515.990310952079 30.597 0.3824 30.597 30.405 30.787 0 31 12 3 0.682523109898179 0.00172189626977517 0.0588126144777255 0.040161 1 6837 60.518 25.104 1 11554000 19859 17575 19910 17602 14253 20332 14554 18315 19747 3514.8 18792 16603 19977 18115 14808 20239 14942 18556 19264 3733.5 1 1 1 1 1 1 1 1 1 1 78 353;407;409 67 71 90 90 AASGEAKPK 9 Phospho (STY) _AAS(ph)GEAKPK_ AAS(1)GEAKPK AAS(99.22)GEAKPK 0 0 1 1 P16403;P10412;P16401 P16403;P10412;P16401 P16401 HIST1H1C;HIST1H1E;HIST1H1B Histone H1.2;Histone H1.4;Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.646667480469 3 313.482947 937.427012 41876.4559836006 1.5935 0.00049953 731020 229.16 731030 229.16 542.646128225208 33.836 0.57962 33.836 33.526 34.105 0 56 19 4 0.928526263986226 0.0029536690105517 0.0420762405430615 0.0010348 1 7561 99.215 65.991 1 29048000 22118 20256 20933 19293 8527.9 20353 8616.7 16335 17134 2008.3 20924 19130 20994 19886 9395.8 20307 9000.1 16601 16545 2269.1 1 1 1 1 1 1 1 1 1 1 79 353;407;409 67 72 91 91 574 AASLNYLNQPSAAPLQVSR 19 Phospho (STY) _AAS(ph)LNYLNQPSAAPLQVSR_ AAS(0.989)LNY(0.011)LNQPSAAPLQVSR AAS(19.73)LNY(-19.73)LNQPS(-74.49)AAPLQVS(-96.92)R 0 0 1 0 Q9NSK0 Q9NSK0 Q9NSK0 KLC4 Kinesin light chain 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.735290527344 3 694.012283 2079.01502 36065.0057508323 1.9423 0.001348 110070 76.387 110070 76.388 770.733719402785 77.789 0.60533 77.789 77.487 78.092 0 89 20 6 0.92287280479538 0.00424639636842295 0.0620353056416593 4.7479E-05 1 18194 113.23 89.668 4 128590000 6307.2 7292.9 6881 7206.4 7725.6 7186.2 8254.4 7019.1 6883.8 10390 5970.4 6888.9 6907.1 7404.3 7796.3 7221.4 8339.3 7360.2 6850.3 9946.3 1 1 1 1 1 1 1 1 1 1 80 2029 68 73 92 92 3688 AASLTEDR 8 Phospho (STY) _AASLT(ph)EDR_ AAS(0.158)LT(0.842)EDR AAS(-7.25)LT(7.25)EDR 0 0 1 0 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 586.282470703125 2 471.700047 941.385541 40289.5459779336 1.6886 0.0007965 242910 114.58 242910 114.58 586.281612754973 37.951 0.66698 37.951 37.658 38.325 0 80 22 6 0.887618203896769 0.0108905873449109 0.321614306321843 3.1194E-05 1 8588 148.5 92.627 2 128260000 69387 97026 81767 99880 47605 88188 44876 78907 105300 4296.8 65704 91674 81200 102190 50345 88809 47466 79638 101340 5872.2 1 1 1 1 1 1 1 1 1 1 81 861 69 74 93 93 4512 AASLTEDRDR 10 Phospho (STY) _AASLT(ph)EDRDR_ AAS(0.373)LT(0.627)EDRDR AAS(-2.26)LT(2.26)EDRDR 0 0 1 1 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.846862792969 2 607.264074 1212.51359 36589.8506162371 1.8429 0.0011191 188690 114.58 188690 114.58 721.845817565679 32.401 0.88064 32.401 32.117 32.997 0 80 29 4 0.972878459852964 0.00812492777289228 0.141471392379373 1.8909E-09 1 7227 184.55 119.5 2 178320000 31296 41341 32790 37198 21872 32562 24342 28810 40848 1760.9 29620 39030 32802 38372 22891 32802 25111 29097 39605 2324.8 1 1 1 1 1 1 1 1 1 1 82 861 70 75 94 94 4512 AASPPASASDLIEQQQK 17 Phospho (STY) _AAS(ph)PPASASDLIEQQQK_ AAS(1)PPASASDLIEQQQK AAS(58.62)PPAS(-58.62)AS(-113.43)DLIEQQQK 0 0 1 0 Q5VSL9 Q5VSL9 Q5VSL9 STRIP1 Striatin-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.395935058594 3 607.619051 1819.83532 35650.9640203219 1.6137 0.00098049 251430 152.78 251430 152.78 760.728591385031 66.066 1.26 66.066 65.256 66.516 1.4211E-14 176 42 5 0.949006562494443 0.00324155484760157 0.0595036528792314 5.1283E-16 1 15390 229 193.26 3 155530000 10772 13448 12321 13489 15092 12261 17090 13175 13618 9938.5 10199 12704 12355 13828 15177 12375 17206 13480 13584 9663.2 1 1 1 1 1 1 1 1 1 1 83 1198 71 76 95 95 2097 AASPPASASDLIEQQQK 17 Phospho (STY) _AAS(ph)PPASASDLIEQQQK_ AAS(1)PPASASDLIEQQQK AAS(53.14)PPAS(-53.14)AS(-97.6)DLIEQQQK 0 0 1 0 Q5VSL9 Q5VSL9 Q5VSL9 STRIP1 Striatin-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.548278808594 4 455.966107 1819.83532 42475.9616010304 1.4419 0.00065748 251290 114.58 251290 114.58 570.797978902206 66.152 0.9782 66.152 65.454 66.432 0 106 32 4 0.952718346795789 0.001468341040069 0.021837104899598 8.2356E-11 1 15575 185.28 164.32 3 13928000 4773.9 3856.4 4458.5 4754.2 5837.5 4896.8 4595.8 4374.1 4872.2 2792 4516.1 3648.1 4522.1 4828.9 5825.2 4900.7 4745.3 4491.9 4795.7 2730.2 1 1 1 1 1 1 1 1 1 1 84 1198 71 76 96 96 2097 AASPPSYTLDLGESQLAPPPSK 22 Phospho (STY) _AAS(ph)PPSYTLDLGESQLAPPPSK_ AAS(0.805)PPS(0.195)YTLDLGESQLAPPPSK AAS(6.15)PPS(-6.15)Y(-108.27)T(-63.46)LDLGES(-193.4)QLAPPPS(-236.67)K 0 0 1 0 Q9ULQ0 Q9ULQ0 Q9ULQ0 STRIP2 Striatin-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 922.483032226563 3 769.369913 2305.08791 32601.3979065033 1.7727 0.0013639 198570 152.78 198580 152.78 922.480445766244 86.936 0.84153 86.936 86.391 87.233 0 75 28 5 0.836494510742508 0.00330023868497924 0.0329864960553178 9.1998E-18 2 20281 247.02 214.46 6 17096000 6295.8 15445 7854.2 14949 8167.6 7127.6 10055 12483 13664 87311 5963.2 14587 7826.5 15254 8300.1 7725.1 10243 14945 13329 82502 2 2 2 2 2 2 2 2 2 2 85 2188 72 77 97;98 97 3959 AASPSPQSVR 10 Phospho (STY) _AAS(ph)PSPQSVR_ AAS(0.998)PS(0.002)PQSVR AAS(27.86)PS(-27.86)PQS(-66.19)VR 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.8310546875 2 540.247695 1078.48084 38942.1840722041 2.2779 0.0012306 212090 114.58 212090 114.58 654.829255040104 30.145 0.68866 30.145 29.806 30.495 0 74 22 5 0.944727540838515 0.00316413774898624 0.143088445389611 1.3193E-09 1 6689 190.78 130.07 3 129790000 17380 23631 18089 23564 19064 16177 18299 19046 21922 3258 16448 22323 18185 24081 19281 16587 18763 19091 21477 3508.6 1 1 1 1 1 1 1 1 1 1 86 1436 73 78 99 99 2620;2621 AASPYSQRPASPTAIR 16 Phospho (STY) _AASPYSQRPAS(ph)PTAIR_ AASPYSQRPAS(0.5)PT(0.5)AIR AAS(-46.31)PY(-78.69)S(-36.08)QRPAS(0)PT(0)AIR 0 0 1 1 Q99569 Q99569 Q99569 PKP4 Plakophilin-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.3427734375 3 584.952476 1751.8356 39163.628931641 1.7283 0.001011 130590 76.388 130590 76.389 661.674149161093 42.904 0.37746 42.904 42.681 43.059 -7.1054E-15 32 12 4 0.627946725239559 0.00153348025526161 0.0130455371177814 9.448E-05 1 9817 111.68 83.357 5 23706000 21818 23199 22009 22865 16471 22384 15331 20615 24653 15437 20646 21914 22081 23489 17035 22465 15916 21212 23930 15013 1 1 1 1 1 1 1 1 1 1 87 1773 74 79 100 100 3261;4746 AASREEPIEWEF 12 Phospho (STY) _AAS(ph)REEPIEWEF_ AAS(1)REEPIEWEF AAS(127.07)REEPIEWEF 0 0 1 1 P39880 P39880 P39880 CUX1 Homeobox protein cut-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 886.910583496094 2 772.326871 1542.63919 33698.806531431 1.9455 0.0015026 148360 114.58 148360 114.58 886.908204083421 96.163 0.78858 96.163 95.849 96.638 0 80 26 4 0.925962911683898 0.00238153050854092 0.188036495041624 7.1938E-05 1 22336 127.07 112.81 1 26005000 7836.5 6616.2 7829.4 6929.2 11728 8698.7 10851 9896 8299.6 20114 7415.3 6251.9 7930.2 7124 11656 8693.1 11018 10486 8297.5 19169 1 1 1 1 1 1 1 1 1 1 88 568 75 80 101 101 915 AASSAAQGAFQGN 13 Phospho (STY) _AAS(ph)SAAQGAFQGN_ AAS(0.972)S(0.028)AAQGAFQGN AAS(15.33)S(-15.33)AAQGAFQGN 0 0 1 0 O15127 O15127 O15127 SCAMP2 Secretory carrier-associated membrane protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.8388671875 2 630.256249 1258.49794 36051.4785906159 1.9576 0.0012338 181800 114.58 181800 114.58 744.838282748266 45.803 0.91093 45.803 45.495 46.406 7.1054E-15 108 30 6 0.996216222613143 0.00327408217436452 0.0180761785476364 1.0081E-22 1 10502 267.08 252.4 2 795940000 23494 19964 20595 20362 25477 21221 23115 25141 20880 8175.3 22221 18861 20960 20897 25530 21297 23581 25312 20697 8279.8 1 1 1 1 1 1 1 1 1 1 89 80 76 81 102 102 142 AASSPDGFFWTQGSPK 16 Phospho (STY) _AAS(ph)SPDGFFWTQGSPK_ AAS(0.802)S(0.198)PDGFFWTQGSPK AAS(6.07)S(-6.07)PDGFFWT(-103.78)QGS(-142.68)PK 0 0 1 0 Q86YV5 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.026794433594 3 588.253932 1761.73997 36246.4587808037 2.2232 0.0013078 259710 152.77 259710 152.78 741.36241024854 90.508 0.48316 90.508 90.279 90.762 0 34 16 3 0.417549719962606 0.00141535633704533 0.0541287954194015 1.5507E-07 1 21087 166.52 147.68 4 8340900 11258 4053.5 11669 3034.2 3786.3 12225 4228.4 5943.9 3544.5 11890 10654 3823.4 11631 3325.3 4313.3 11787 4264.2 6563.8 3526.4 11334 1 1 1 1 1 1 1 1 1 1 90 1405 77 82 103 103 2556 AASSPDGFFWTQGSPKPGTASPK 23 Phospho (STY) _AAS(ph)SPDGFFWTQGSPKPGTASPK_ AAS(0.819)S(0.181)PDGFFWTQGSPKPGTASPK AAS(6.54)S(-6.54)PDGFFWT(-75.68)QGS(-140.16)PKPGT(-173.17)AS(-183.45)PK 0 0 1 1 Q86YV5 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.151672363281 4 601.026962 2400.07874 35422.497700425 2.158 0.001297 285960 171.87 285970 171.87 773.149609135389 82.638 0.57161 82.638 82.342 82.914 0 71 19 5 0.927188124293695 0.00515844089156778 0.0605035034697054 1.0005E-17 1 19331 231.07 213.91 6 25945000 25727 2530.9 28331 2272.2 3764 25760 3301.9 12696 2630.8 8648.6 24354 2389.3 28077 2726.2 5263.1 24625 3364.8 13502 2624.3 8437.5 1 1 1 1 1 1 1 1 1 1 91 1405 78 83 104 104 2556 AASSPSNPAALPVASDSSPMGSK 23 Phospho (STY) _AAS(ph)SPSNPAALPVASDSSPMGSK_ AAS(0.461)S(0.461)PS(0.078)NPAALPVASDSSPMGSK AAS(0)S(0)PS(-7.7)NPAALPVAS(-78.14)DS(-77.5)S(-77.16)PMGS(-93.93)K 0 0 1 0 Q7Z5J4 Q7Z5J4 Q7Z5J4 RAI1 Retinoic acid-induced protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.114074707031 3 736.999602 2207.97698 32412.7738234241 2.0395 0.0015031 207300 152.78 207300 152.78 890.112741043615 69.34 0.84551 69.34 68.912 69.758 0 37 28 2 0.591186301260733 0.000893260156824154 0.0169541317657688 0.0019168 1 16237 96.54 81.45 7 15274000 14537 16828 15890 17134 19097 17170 20120 19271 17833 14542 13761 15899 15964 17574 19202 17262 20369 19687 17693 14139 1 1 1 1 1 1 1 1 1 1 92 1348 79 84 105 105 2431;2432 AASSSSPGSPVASSPSR 17 Phospho (STY) _AASSSSPGS(ph)PVASSPSR_ AASSS(0.018)S(0.018)PGS(0.964)PVASSPSR AAS(-61.18)S(-35.03)S(-17.28)S(-17.28)PGS(17.28)PVAS(-70.74)S(-106.84)PS(-136.87)R 0 0 1 0 Q92538 Q92538 Q92538 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 920.938903808594 2 806.354148 1610.69374 32579.599924664 1.9344 0.0015598 142100 114.58 142100 114.58 920.936118673892 29.837 0.26416 29.837 29.721 29.985 0 13 8 2 0.921773658401647 0.000237491659238842 0.0087251992846255 1.0393E-22 1 6670 270.74 244.08 8 6602100 4036.7 2884.7 3907.3 3257.1 3745.5 2666.9 5636.4 4784.1 2600.1 1403.7 3819.3 2727.2 3943.5 3312.1 3834.4 2728.7 5563.4 4759.1 2694.3 1432.5 1 1 1 1 1 1 1 1 1 1 93 1596 80 85 106 106 2930 AASVPCSVAPEK 12 Phospho (STY) _AAS(ph)VPCSVAPEK_ AAS(0.999)VPCS(0.001)VAPEK AAS(31.55)VPCS(-31.55)VAPEK 0 0 1 0 Q9C073 Q9C073 Q9C073 FAM117A Protein FAM117A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.453735351563 2 648.288703 1294.56285 33774.7996244071 1.5212 0.00098618 353490 229.16 353490 229.16 877.450663953177 54.341 0.35468 54.341 54.119 54.473 0 27 11 3 0.980587450792267 0.00102668914940394 0.0255638852429379 7.5593E-16 1 12661 217.12 175.55 2 16904000 7787.4 17103 8392.3 16923 45067 8159 41927 22889 17632 10250 7371.1 16155 8858.9 17246 43501 8773.3 42163 22697 18428 10182 1 1 1 1 1 1 1 1 1 1 94 1882 81 86 107 107 3421 AATESVPCSPSPLAGEIR 18 Phospho (STY) _AATESVPCS(ph)PSPLAGEIR_ AATES(0.006)VPCS(0.987)PS(0.006)PLAGEIR AAT(-36.82)ES(-22.06)VPCS(21.93)PS(-21.93)PLAGEIR 0 0 1 0 Q8N9M1 Q8N9M1 Q8N9M1 C19orf47 Uncharacterized protein C19orf47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.685607910156 3 641.295691 1920.86524 37872.0376678762 1.8061 0.0011582 119110 76.388 119120 76.389 717.683729194501 67.548 0.58659 67.548 67.269 67.855 0 62 19 5 0.769604294750556 0.00208713349091195 0.0616651566837665 0.0029162 1 15870 93.583 74.508 4 15013000 6856.3 7033.8 8143.3 7084.5 5983.7 7416.2 5677.2 6829 7501.8 10061 6492.6 6644.9 8098.8 7276.4 6197.2 7430.4 5843.6 7175.9 7324.7 9631.8 1 1 1 1 1 1 1 1 1 1 95 1489 82 87 108 108 2737 AATTATPAATTSPK 14 Phospho (STY) _AATTATPAATTS(ph)PK_ AATTATPAAT(0.002)T(0.029)S(0.968)PK AAT(-114.56)T(-110.06)AT(-81.94)PAAT(-26.26)T(-15.18)S(15.18)PK 0 0 1 0 Q92766 Q92766 Q92766 RREB1 Ras-responsive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 913.989013671875 2 684.823964 1367.63338 33429.2891508499 1.7072 0.0011691 334630 229.16 334630 229.16 913.987406584269 39.916 0.37793 39.916 39.742 40.12 0 31 12 3 0.982063193895587 0.000789149262596737 0.0134582357087047 1.1621E-22 1 9071 265.64 221.61 6 22272000 20821 18335 21519 17570 12751 21358 14883 15995 18942 3810.9 19705 17316 21525 18148 13491 21179 15159 16366 18518 3958.6 1 1 1 1 1 1 1 1 1 1 96 1618 83 88 109 109 2985 AAVELEEPEDAR 12 Unmodified _AAVELEEPEDAR_ 0 0 0 0 O94906 O94906 O94906 PRPF6 Pre-mRNA-processing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.400756835938 2 664.820064 1327.62557 35863.0048148218 1.5291 0.0010166 172350 114.58 172350 114.58 779.400691141661 52.598 0.46048 52.598 52.323 52.783 7.1054E-15 30 15 3 0.732874998602826 0.000954643223274398 0.0407554889207708 9.782E-07 1 12248 159.09 109.72 1 10593000 23560 23524 22803 22485 26129 24078 24721 25209 25034 19668 22291 22216 23043 23176 26299 24114 25240 25836 24688 19103 1 1 1 1 1 1 1 1 1 1 97 226 84 89 110 110 AAVGQESPGGLEAGNAK 17 Phospho (STY) _AAVGQES(ph)PGGLEAGNAK_ AAVGQES(1)PGGLEAGNAK AAVGQES(138.77)PGGLEAGNAK 0 0 1 0 Q29RF7 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.693359375 3 545.91732 1634.73013 37783.0440315593 1.1013 0.00060121 279850 152.78 279850 152.78 698.692574319838 53.043 0.60511 53.043 52.812 53.417 0 43 21 3 0.96645512622645 0.00140178687659278 0.00636902409424726 4.2185E-07 1 12357 138.77 117.37 1 105560000 123900 31806 144140 33755 69831 127860 55727 89920 41266 13718 117310 30057 143040 36052 75039 123510 57007 92080 41331 14998 1 1 1 1 1 1 1 1 1 1 98 1119 85 90 111 111 1945 AAVPSGASTGIYEALELR 18 Unmodified _AAVPSGASTGIYEALELR_ 0 0 0 0 P06733;P13929;P09104 P06733 P06733 ENO1;ENO3;ENO2 Alpha-enolase;Beta-enolase;Gamma-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.707458496094 3 602.319502 1803.93668 38799.7773693941 1.4768 0.0008895 126820 76.387 126820 76.388 679.041474240837 90.951 0.54961 90.951 90.618 91.168 1.4211E-14 45 18 3 0.987452087779141 0.00135384763941101 0.0529724500935577 1.3158E-11 1 21167 208.43 181.1 1 13671000 3036.4 2809.3 3608.9 4336.1 4334.1 3266 3966.2 3127.6 4770.7 6805 2875.4 2662.5 3609.2 4341.8 4351 3332.5 4077 3347.6 4673.1 6480.1 1 1 1 1 1 1 1 1 1 1 99 314 86 91 112 112 AAVPSGASTGIYEALELR 18 Phospho (STY) _AAVPSGASTGIY(ph)EALELR_ AAVPSGASTGIY(1)EALELR AAVPS(-121.97)GAS(-89.11)T(-66.42)GIY(66.42)EALELR 0 0 1 0 P06733;P13929;P09104 P06733 P06733 ENO1;ENO3;ENO2 Alpha-enolase;Beta-enolase;Gamma-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.359680175781 3 628.974946 1883.90301 41594.3603550849 1.3951 0.00087749 121450 76.388 121450 76.389 705.362182349964 91.793 0.48809 91.793 91.538 92.026 0 36 16 3 0.849968356976572 0.00150124572615749 0.0430128372111004 1.9737E-08 1 21389 173.28 152.62 4 6925100 3909.1 2947.6 3869 3466.2 3834.7 3478.7 4621.4 4801.5 4182.4 11234 3698.8 2787.4 3899.2 3527.5 3904.2 3524.1 4654.4 5103.5 4145.4 10689 1 1 1 1 1 1 1 1 1 1 100 314 86 92 113 113 4869 AAVSPQK 7 Phospho (STY) _AAVS(ph)PQK_ AAVS(1)PQK AAVS(73.07)PQK 0 0 1 0 Q9HCU9 Q9HCU9 Q9HCU9 BRMS1 Breast cancer metastasis-suppressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.849792480469 2 390.686211 779.357869 41025.2501204413 1.248 0.00048756 586560 229.16 586560 229.16 619.848611997836 37.522 0.41653 37.522 37.325 37.741 0 31 16 3 0.956926437328918 0.000913061401465895 0.0045677246383032 0.018859 1 8488 73.067 7.7198 1 29130000 42646 34378 39104 32430 34902 49437 28768 46978 41507 4964.4 40341 32464 39516 33690 35592 48773 29927 47367 40414 5761.8 1 1 1 1 1 1 1 1 1 1 101 1992 87 93 114 114 3617 AAVSPQKR 8 Phospho (STY) _AAVS(ph)PQKR_ AAVS(1)PQKR AAVS(106.62)PQKR 0 0 1 1 Q9HCU9 Q9HCU9 Q9HCU9 BRMS1 Breast cancer metastasis-suppressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.602905273438 3 312.826937 935.45898 46119.1849299905 0.97494 0.00030499 488370 152.78 488370 152.78 465.602220731424 30.076 0.53796 30.076 29.806 30.344 3.5527E-15 55 17 4 0.96366396692337 0.00574333603462564 0.156068558347038 0.00094221 1 6691 106.62 59.8 1 57378000 30301 27343 31762 28087 28480 29930 29772 28118 29322 5042.2 28678 25834 31861 28823 29113 29905 30231 28427 28951 5398.6 1 1 1 1 1 1 1 1 1 1 102 1992 88 94 115 115 3617 AAVTPGKK 8 Phospho (STY) _AAVT(ph)PGKK_ AAVT(1)PGKK AAVT(73.95)PGKK 0 0 1 1 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.648071289063 3 284.484399 850.431369 43554.5063116356 1.3836 0.00039362 805540 229.16 805540 229.16 513.647364380641 39.346 0.636 39.346 39.052 39.688 0 63 21 4 0.824131008468889 0.00783356223488211 0.0936900090583794 0.034291 1 8930 73.951 47.437 1 43241000 58167 35247 57742 38344 16172 57508 21875 42304 40952 3962.9 55039 33314 57669 39490 18964 56605 22515 43143 39598 4710.6 1 1 1 1 1 1 1 1 1 1 103 437 89 95 116 116 4415 AAVVTSPPPTTAPHK 15 Phospho (STY) _AAVVTS(ph)PPPTTAPHK_ AAVVT(0.047)S(0.953)PPPTTAPHK AAVVT(-13.07)S(13.07)PPPT(-67.23)T(-72.07)APHK 0 0 1 0 P35611 P35611 P35611 ADD1 Alpha-adducin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.708618164063 3 518.595629 1552.76506 38344.0562292088 1.4197 0.00073627 294590 152.78 294600 152.78 671.370970795255 48.058 0.90432 48.058 47.6 48.505 -7.1054E-15 105 30 4 0.950627695570567 0.00330163370660663 0.0587578489148399 0.00014262 1 11069 106.82 87.207 4 96555000 21621 16751 22178 15354 18595 20004 18844 20203 18627 10864 20461 15816 22256 15925 19085 19866 19164 20584 18388 10697 1 1 1 1 1 1 1 1 1 1 104 549 90 96 117 117 889 ACASPSAQVEGSPVAGSDGSQPAVK 25 Phospho (STY) _ACASPSAQVEGS(ph)PVAGSDGSQPAVK_ ACASPSAQVEGS(1)PVAGSDGSQPAVK ACAS(-53.5)PS(-46.58)AQVEGS(46.58)PVAGS(-64.88)DGS(-82.71)QPAVK 0 0 1 0 Q9UFC0 Q9UFC0 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 966.4716796875 3 813.028221 2436.06283 32114.8761338558 1.7872 0.0014531 187910 152.77 187910 152.78 966.138273304023 51.472 0.52516 51.472 51.165 51.69 0 59 17 5 0.943140961392072 0.00116012315559758 0.00376176958114337 9.5337E-08 1 11980 150.62 134.13 5 15838000 6016.4 6877.9 5692.2 7525.9 7785.4 5631.3 6011.3 6587.2 7596 5225.2 5691.8 6501 5772.7 7657.3 7753.5 5750.9 6247.6 6727.8 7427.8 5072.6 1 1 1 1 1 1 1 1 1 1 105 2137 91 97 118 118 3844;3845 ACASPSAQVEGSPVAGSDGSQPAVK 25 Phospho (STY) _ACAS(ph)PSAQVEGSPVAGSDGSQPAVK_ ACAS(0.962)PS(0.038)AQVEGSPVAGSDGSQPAVK ACAS(13.98)PS(-13.98)AQVEGS(-104.17)PVAGS(-167)DGS(-180.25)QPAVK 0 0 1 0 Q9UFC0 Q9UFC0 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 966.140014648438 3 813.028221 2436.06283 31530.64713231 1.4447 0.0011746 187910 152.78 187910 152.78 966.138484891233 55.277 0.58145 55.277 54.955 55.536 0 75 19 6 0.953387375167121 0.0031978092329027 0.0196313647939127 1.029E-17 1 12871 224.14 207.65 5 73562000 11125 17380 13100 17290 12754 12493 13256 17420 18153 6772.9 10535 16418 13075 17682 12975 12811 13604 17486 17704 6780.7 1 1 1 1 1 1 1 1 1 1 106 2137 91 97 119 119 3844;3845 ACLISLGYDVENDR 14 Unmodified _ACLISLGYDVENDR_ 0 0 0 0 O43707 O43707 O43707 ACTN4 Alpha-actinin-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.978515625 3 542.259367 1623.75627 46379.2101513105 0.97547 0.00052896 140870 76.385 140870 76.386 618.644903997995 86.175 0.40613 86.175 85.957 86.363 0 30 13 3 0.911193636392067 0.00271476915388998 0.080666200790919 0.0045736 1 20112 90.444 72.635 1 7442900 2929.3 4491.5 3389.5 4066.3 3198.1 3680.4 4491.9 3791.6 3974.4 5388.6 2773.6 4240.6 3386.7 4194.9 3274.5 3717.8 4496 3961.3 3943.5 5161.7 1 1 1 1 1 1 1 1 1 1 107 122 92 98 120 120 ACPEEPAAPSPEPR 14 Phospho (STY) _ACPEEPAAPS(ph)PEPR_ ACPEEPAAPS(1)PEPR ACPEEPAAPS(80.86)PEPR 0 0 1 0 O94819 O94819 O94819 KBTBD11 Kelch repeat and BTB domain-containing protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.27685546875 3 529.888484 1586.64362 41267.4838904116 0.92101 0.00048803 144160 76.388 144160 76.388 606.276271909725 40.777 0.51269 40.777 40.539 41.052 0 34 17 3 0.780611106263356 0.00119749341018289 0.0061528621563756 0.0074854 1 9304 80.859 65.657 1 20352000 14949 12138 14340 12408 12635 15488 11712 12708 12451 3616.9 14143 11468 14452 12773 12910 15359 11987 12964 12254 3699.9 1 1 1 1 1 1 1 1 1 1 108 220 93 99 121 121 382 ACSPCSSQSSSSGICTDFWDLLVK 24 Phospho (STY) _ACSPCS(ph)SQSSSSGICTDFWDLLVK_ ACS(0.179)PCS(0.195)S(0.195)QS(0.107)S(0.107)S(0.107)S(0.107)GICT(0.003)DFWDLLVK ACS(-0.37)PCS(0)S(0)QS(-2.59)S(-2.59)S(-2.59)S(-2.59)GICT(-18.83)DFWDLLVK 0 0 1 0 Q7Z6Z7 Q7Z6Z7 Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1078.15893554688 3 924.716549 2771.12782 30568.3821305112 1.3667 0.0012638 165210 152.77 165210 152.77 1078.15635396461 102.53 0.23692 102.53 102.33 102.57 0 24 7 5 0.827448131188476 0.00192627938952056 0.0360636145665103 0.045652 1 24166 44.632 34.711 8 116300000 10622 2654.7 11010 10597 3201.4 7693.6 8745 16634 9122.3 133360 10053 2553 10979 10349 3788.6 8204.5 8645.7 20357 8985 125960 1 1 1 1 1 1 1 1 1 1 109 1356 94 100 122 122 2462;2463 ACSTPHVQVAGK 12 Phospho (STY) _ACS(ph)TPHVQVAGK_ ACS(0.592)T(0.408)PHVQVAGK ACS(1.62)T(-1.62)PHVQVAGK 0 0 1 0 O43182 O43182 O43182 ARHGAP6 Rho GTPase-activating protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.310791015625 3 445.535605 1333.58499 40213.2023577443 0.59381 0.00026456 342900 152.77 342900 152.78 598.644636718903 45.443 0.8142 45.443 44.976 45.791 0 47 27 3 0.959866406928714 0.000821932124530698 0.00256967789181454 6.4448E-05 1 10500 122.93 91.292 2 36499000 7137.5 23590 12156 24452 13850 10348 12392 14310 25721 3752 6772.8 22289 11970 24828 13947 11058 13049 14314 24813 3864.2 1 1 1 1 1 1 1 1 1 1 110 100 95 101 123 123 166 ADAEGESDLENSR 13 Unmodified _ADAEGESDLENSR_ 0 0 0 0 Q9Y490 Q9Y490 Q9Y490 TLN1 Talin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.381591796875 2 696.797317 1391.58008 33787.7649953153 1.1557 0.00080529 164440 114.58 164440 114.58 811.379998852147 34.94 0.31764 34.94 34.774 35.092 0 30 10 4 0.981908772435624 0.00130540751413364 0.0458253285757926 2.115E-15 1 7840 231.92 205.48 1 20997000 19823 14071 18484 13661 40087 19356 40754 25414 12435 2090.3 18752 13290 18955 14143 39388 19228 40676 25321 13471 2556.4 1 1 1 1 1 1 1 1 1 1 111 2275 96 102 124 124 ADAFGDELFSVFEGDSTTAAGTK 23 Acetyl (Protein N-term) _(ac)ADAFGDELFSVFEGDSTTAAGTK_ 1 0 0 0 P42285 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 870.083374023438 3 793.360532 2377.05977 33996.0315616178 1.414 0.0011218 96283 76.387 96285 76.389 870.08304006961 102.99 0.40614 102.99 102.83 103.23 0 18 13 4 0.810141828919218 0.00103653838245472 0.0128008284302947 0.0078331 1 24284 48.641 36.788 1 26693000 4108.5 4979.9 2527.8 4032.8 5621.8 3748.1 3310.9 2802.5 4767.6 63027 3881.8 4699 2669.7 4194 5491.1 3876.5 3521.1 4746.9 4642.4 59412 1 1 1 1 1 1 1 1 1 1 112 584 97 103 125 125 ADANKAEVPGATGGDSPHLQPAEPPGEPR 29 Acetyl (Protein N-term),Phospho (STY) _(ac)ADANKAEVPGATGGDS(ph)PHLQPAEPPGEPR_ ADANKAEVPGAT(0.025)GGDS(0.975)PHLQPAEPPGEPR ADANKAEVPGAT(-15.9)GGDS(15.9)PHLQPAEPPGEPR 1 0 1 1 Q9P2K5 Q9P2K5 Q9P2K5 MYEF2 Myelin expression factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1073.17834472656 3 996.455879 2986.34581 30685.943766658 1.4869 0.0014817 76659 76.387 76661 76.389 1073.17725527572 57.033 0.3513 57.033 56.868 57.22 7.1054E-15 36 11 4 0.962703232464822 0.00223579853006019 0.0125328621705218 6.1811E-26 1 13335 86.266 61.245 2 22087000 1779.6 1701.1 1661.6 1396.8 12015 1844.7 14065 6547.2 1903.1 5919.6 1683.5 1605.2 1810.5 1460 11599 1899.2 13886 6563.4 2393.6 5725.5 1 1 1 1 1 1 1 1 1 1 113 2111 98 104 126 126 3810 ADDLDFETGDAGASATFPMQCSALR 25 Acetyl (Protein N-term),Oxidation (M) _(ac)ADDLDFETGDAGASATFPM(ox)QCSALR_ ADDLDFETGDAGASATFPM(1)QCSALR ADDLDFETGDAGASATFPM(56.95)QCSALR 1 1 0 0 P63241;Q6IS14 P63241 P63241 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.390808105469 3 902.054897 2703.14286 32986.4113140676 1.3353 0.0012045 0.30715 0.00027707 1.6425 0.0014816 902.389492522258 85.759 0.71085 85.759 85.448 86.159 1.4211E-14 88 24 5 0.8033896566854 0.00273897209701656 0.0305504503630974 0.0051113 1 19985 56.947 49.299 1 35351000 3638.1 3549.3 3643.1 4249.3 3171.1 3252.9 2401.3 4025.3 4737.4 16344 3442.6 3356.9 3660.8 4304.3 3237.3 3345.5 2545.2 4500.2 4575.3 15483 1 1 1 1 1 1 1 1 1 1 114 782 99 105 127 127 106 ADDLDFETGDAGASATFPMQCSALR 25 Acetyl (Protein N-term) _(ac)ADDLDFETGDAGASATFPMQCSALR_ 1 0 0 0 P63241;Q6IS14 P63241 P63241 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 897.059509277344 3 896.723258 2687.14795 32869.6614503659 1.6272 0.0014591 -0.25528 -0.00022892 1.3719 0.0012302 897.057574184373 95.922 0.89556 95.922 95.538 96.433 0 138 30 7 0.925815766355607 0.00511085301911894 0.130184960614732 1.2505E-05 1 22263 88.239 69.455 1 128080000 2424.1 3627.1 1663.7 2545.6 2625.9 2127.1 2359.7 2761.7 3062.4 20739 2291 3420.2 1730.3 2673 2604.8 2197.8 2434 3370.5 2991.9 19593 1 1 1 1 1 1 1 1 1 1 115 782 99 106 128 128 ADDLLPLGDQTQDGDFGSR 19 Unmodified _ADDLLPLGDQTQDGDFGSR_ 0 0 0 0 O43290 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.37109375 3 673.979986 2018.91813 37591.5244346498 1.9416 0.0013086 113340 76.386 113340 76.387 750.36726080902 82.014 0.40547 82.014 81.824 82.23 0 33 13 3 0.674925189544709 0.00123518437344436 0.0545131031906016 0.0066723 1 19218 85.498 68.279 1 8107600 4989.5 6341.4 4478.8 5716 6140.2 4545 6187.5 5726.9 5842.5 21142 4719.4 5986.9 4559.7 5888.3 6133.4 4662.5 6286.6 6335.7 5779.4 20040 1 1 1 1 1 1 1 1 1 1 116 103 100 107 129 129 ADFDDRVSDEEK 12 Acetyl (Protein N-term) _(ac)ADFDDRVSDEEK_ 1 0 0 1 P52907 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 848.897338867188 2 734.315342 1466.61613 34411.5060202062 1.6398 0.0012041 156040 114.58 156040 114.58 848.896386974143 52.376 0.65875 52.376 52.183 52.842 0 38 22 3 0.353698410421348 0.000392682477536815 0.013389834879108 0.0065336 1 12196 67.061 37.588 1 12958000 21160 22261 21362 22067 30603 23059 32632 26056 22748 17704 20023 21028 21615 22685 30530 23139 32848 26553 22864 17273 1 1 1 1 1 1 1 1 1 1 117 698 102 108 130 130 ADFDTYDDR 9 Acetyl (Protein N-term) _(ac)ADFDTYDDR_ 1 0 0 0 Q15056 Q15056 Q15056 EIF4H Eukaryotic translation initiation factor 4H MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.230651855469 2 580.23055 1158.44655 41346.9281067277 0.58438 0.00033907 0.025611 1.4861E-05 0.60999 0.00035393 580.230463824485 54.541 0.57482 54.541 54.207 54.782 0 55 19 3 0.960649785453838 0.00175026562951356 0.019895386353475 4.41E-06 1 12690 103.56 86.178 1 80527000 13067 13595 12496 14346 10398 13574 9380.6 11864 13837 3767 12363 12847 12588 14671 10666 13626 9719.6 12080 13464 3821.7 1 1 1 1 1 1 1 1 1 1 118 1053 103 109 131 131 ADFTVVAGDEGSSTTGGSSEENKGPSGSAVSR 32 Phospho (STY) _ADFTVVAGDEGSSTTGGS(ph)SEENKGPSGSAVSR_ ADFTVVAGDEGSSTT(0.001)GGS(0.89)S(0.109)EENKGPSGSAVSR ADFT(-227.3)VVAGDEGS(-81.6)S(-57.92)T(-35.59)T(-28.74)GGS(9.12)S(-9.12)EENKGPS(-41.4)GS(-56.95)AVS(-61.72)R 0 0 1 1 P49916 P49916 P49916 LIG3 DNA ligase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 896.425048828125 4 781.590111 3122.33134 32587.7980207698 1.4561 0.0011381 146600 114.58 146600 114.58 896.423276009583 62.746 0.38169 62.746 62.492 62.874 0 39 12 4 0.947473024614489 0.00190567315916417 0.0207776429701316 1.4925E-34 2 14714 291.03 275.26 10 17182000 6076.9 7108.6 6305 6579 7406.9 7236.1 7803.7 9485 7228.7 50617 5751.2 6712.2 6349.9 6798 7456.6 7347.2 7908.7 10952 7157 47882 2 2 2 2 2 2 2 2 2 2 119 660 104 110 132;133 132 1113 ADGYEPPVQESV 12 Unmodified _ADGYEPPVQESV_ 0 0 0 0 P61247 P61247 P61247 RPS3A 40S ribosomal protein S3a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.379150390625 2 645.796057 1289.57756 35559.3905543339 1.6018 0.0010344 177430 114.58 177430 114.58 760.377879947241 61.502 0.55397 61.502 61.187 61.741 7.1054E-15 48 18 3 0.790209968667846 0.00175917441556507 0.0901977138966668 0.00031953 1 14396 150.35 138.58 1 57337000 19801 21851 19952 21804 16893 19559 17121 18780 20881 17037 18738 20642 20045 22355 17330 19728 17520 19381 20444 16477 1 1 1 1 1 1 1 1 1 1 120 749 105 111 134 134 ADGYEPPVQESV 12 Phospho (STY) _ADGYEPPVQES(ph)V_ ADGYEPPVQES(1)V ADGY(-170.02)EPPVQES(170.02)V 0 0 1 0 P61247 P61247 P61247 RPS3A 40S ribosomal protein S3a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.361389160156 2 685.779222 1369.54389 35032.6543398626 1.4688 0.0010073 167080 114.58 167080 114.58 800.360978226983 62.288 0.95324 62.288 61.92 62.874 0 93 32 4 0.994410032954264 0.00376721936345579 0.175466708503467 1.0712E-10 1 14606 183.37 174.43 2 77316000 16396 17375 12726 16509 19161 16622 21507 18057 15715 25124 15501 16409 13109 17005 19093 16721 21621 18814 15752 24075 1 1 1 1 1 1 1 1 1 1 121 749 105 112 135 135 1234 ADHSFSDGVPSDSVEAAK 18 Acetyl (Protein N-term),Phospho (STY) _(ac)ADHSFS(ph)DGVPSDSVEAAK_ ADHS(0.02)FS(0.98)DGVPS(0.001)DSVEAAK ADHS(-16.99)FS(16.99)DGVPS(-30.68)DS(-48.14)VEAAK 1 0 1 0 Q99733 Q99733 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1085.48461914063 2 970.899117 1939.78368 29971.4351537416 1.6156 0.0015686 118020 114.58 118020 114.58 1085.48013361678 61.894 0.5598 61.894 61.621 62.181 0 43 18 3 0.974879671101868 0.000372729258261587 0.00746570128407347 1.1486E-41 1 14526 137.61 116.37 4 7301400 4173.5 6190.1 3081.4 7634.3 4252.2 3976.1 5164.9 6271.7 9353 10235 3945.1 5855.8 3181.6 7691.7 4262.9 4196.8 5328.3 6510.4 9051 9782.9 1 1 1 1 1 1 1 1 1 1 122 1788 106 113 136 136 3296 ADILEDKDGK 10 Unmodified _ADILEDKDGK_ 0 0 0 1 P52272 P52272 P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.68798828125 3 368.524149 1102.55062 41259.5377928364 2.1009 0.00077423 621840 229.16 621840 229.16 597.687442643056 61.88 0.44253 61.88 61.65 62.093 0 45 14 4 0.860253086993514 0.00302187588400014 0.0285637698164908 0.018884 1 14530 77.597 43.711 1 27531000 23901 24567 23535 24902 32800 25989 30957 28621 27285 2738.4 22616 23210 23829 25566 32709 26039 31499 28689 27078 3240.9 1 1 1 1 1 1 1 1 1 1 123 688 107 114 137 137 ADKEAAFDDAVEER 14 Acetyl (Protein N-term) _(ac)ADKEAAFDDAVEER_ 1 0 0 1 Q09028 Q09028 Q09028 RBBP4 Histone-binding protein RBBP4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.30029296875 3 536.577641 1606.71109 38929.9941529172 1.1444 0.00061405 142360 76.388 142360 76.388 612.965085561769 65.612 0.61225 65.612 65.314 65.926 0 65 20 5 0.97848081461223 0.00876867132719356 0.131645564860054 5.9835E-05 1 15387 64.842 32.78 1 83809000 5883 7336.7 8036.6 7060.9 7002 6363.8 7451.4 6423.8 7739.9 3912.7 5574.9 6929.2 7956.8 7255.6 7173.3 6418 7571.2 6559.1 7624.7 3832.9 1 1 1 1 1 1 1 1 1 1 124 892 108 115 138 138 ADKPDMGEIASFDK 14 Acetyl (Protein N-term),Oxidation (M) _(ac)ADKPDM(ox)GEIASFDK_ ADKPDM(1)GEIASFDK ADKPDM(49.19)GEIASFDK 1 1 0 1 P63313 P63313 P63313 TMSB10 Thymosin beta-10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.68408203125 3 527.908223 1580.70284 38206.1846493155 1.2 0.00063348 289400 152.78 289400 152.78 680.683500721242 65.95 0.60053 65.95 65.659 66.26 0 69 19 5 0.97874835840628 0.00505176736385594 0.0988465145799954 9.0214E-07 1 15476 49.188 28.806 1 46351000 15425 11626 15385 13829 23877 14769 23218 17329 11947 4996.1 14596 10995 15596 14080 23709 14804 23357 17433 12266 5105.4 1 1 1 1 1 1 1 1 1 1 125 784 109 116 139 139 107 ADKPDMGEIASFDK 14 Acetyl (Protein N-term) _(ac)ADKPDMGEIASFDK_ 1 0 0 1 P63313 P63313 P63313 TMSB10 Thymosin beta-10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.687316894531 3 522.576584 1564.70792 37404.7557467934 2.4256 0.0012676 292350 152.78 292350 152.78 675.351971962915 79.322 0.65785 79.322 78.986 79.644 0 83 22 4 0.994811552621687 0.00684594184325618 0.0838756885168111 2.0806E-10 1 18550 89.507 73.325 1 220520000 28731 22063 30133 20216 44870 29834 47607 32354 22580 7406.1 27192 20832 30447 21024 44680 29520 47643 32579 23342 7722.5 1 1 1 1 1 1 1 1 1 1 126 784 109 117 140 140 ADLEEQLSDEEK 12 Acetyl (Protein N-term) _(ac)ADLEEQLSDEEK_ 1 0 0 0 P47755 P47755 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.905456542969 2 724.325376 1446.6362 34488.839023007 1.7215 0.0012469 158190 114.58 158190 114.58 838.905799718 75.575 0.60439 75.575 75.286 75.891 0 37 20 2 0.991212593539445 0.00225317555658535 0.162472596537914 6.4272E-11 1 17695 138.11 109.42 1 42597000 7328.8 10881 7942.1 10295 14401 9543.8 14805 11001 11163 18581 6937.2 10275 8041.9 10594 14235 9653 14951 11538 11169 17750 1 1 1 1 1 1 1 1 1 1 127 620 110 118 141 141 ADLESPQRK 9 Phospho (STY) _ADLES(ph)PQRK_ ADLES(1)PQRK ADLES(58.04)PQRK 0 0 1 1 Q9Y2Y9 Q9Y2Y9 Q9Y2Y9 KLF13 Krueppel-like factor 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 527.950988769531 3 375.176294 1122.50705 43780.0434787304 1.1579 0.00043444 407210 152.77 407210 152.78 527.951077129119 39.422 0.51882 39.422 39.169 39.688 0 40 17 3 0.823390748700032 0.00144638005025645 0.013822375585618 0.022138 1 8953 58.04 35.162 1 11535000 16348 7778.5 15348 7305.7 10325 15346 11084 11547 7426.3 2252 15465 7345.4 15452 7659.3 10782 14980 11146 11798 7482.7 2387.8 1 1 1 1 1 1 1 1 1 1 128 2261 111 119 142 142 4189 ADMTASGSPDYGQPHK 16 Phospho (STY) _ADMTASGS(ph)PDYGQPHK_ ADMTAS(0.013)GS(0.987)PDYGQPHK ADMT(-36.3)AS(-18.77)GS(18.77)PDY(-93.32)GQPHK 0 0 1 0 Q01543 Q01543 Q01543 FLI1 Friend leukemia integration 1 transcription factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.345275878906 3 581.234431 1740.68146 36132.107988043 2.3557 0.0013692 262850 152.78 262850 152.78 734.010084244879 45.861 0.55519 45.861 45.585 46.14 -7.1054E-15 56 18 4 0.99593533237935 0.00834866389679092 0.053363685316602 1.7336E-11 1 10552 209.23 183.64 4 74418000 22718 8151 25108 7548.4 43084 24257 53196 28372 7604.3 8030.7 21506 7696.5 25384 8055.7 42761 23635 52415 28542 9436.8 8218.5 1 1 1 1 1 1 1 1 1 1 129 839 112 120 143 143 1354 ADPSLLGFSVNASSER 16 Phospho (STY) _ADPSLLGFSVNAS(ph)SER_ ADPSLLGFSVNAS(0.874)S(0.126)ER ADPS(-132.87)LLGFS(-45.82)VNAS(8.43)S(-8.43)ER 0 0 1 0 Q6Y7W6 Q6Y7W6 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.985229492188 3 577.264608 1728.77199 39794.4577764247 1.1657 0.00067293 132330 76.387 132330 76.388 653.651685422964 88.27 0.54379 88.27 87.908 88.452 1.4211E-14 54 18 4 0.85813063788665 0.00300861429911655 0.0361290795063402 4.1356E-07 1 20558 150.65 135.68 4 12314000 4211.2 4120 3922.6 3684.3 4820.5 4901.4 5396 4054.8 3806.7 10149 3983.8 3889.6 3978.5 3829.1 4845.5 4867.1 5421.5 4405.9 3823.5 9650.6 1 1 1 1 1 1 1 1 1 1 130 1288 113 121 144 144 2294 ADRDQSPFSK 10 Phospho (STY) _ADRDQS(ph)PFSK_ ADRDQS(1)PFSK ADRDQS(44.31)PFS(-44.31)K 0 0 1 1 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.952880859375 3 410.843203 1229.50778 41348.3301579363 1.36 0.00055875 371860 152.77 371860 152.78 563.952483899272 43.553 0.75179 43.553 43.242 43.994 0 78 24 4 0.954893533043594 0.00511394206326553 0.0109889205843005 0.0015163 2 9987 97.203 75.952 2 179780000 65933 97770 69744 89080 87835 68081 85017 86221 104440 7150.9 62404 92310 70225 91657 88045 69419 87208 85998 102230 8728.9 2 2 2 2 2 2 2 2 2 2 131 952 116 122 145;146 145 1583 ADREVQAEQPSSSSPR 16 Phospho (STY) _ADREVQAEQPSSSS(ph)PR_ ADREVQAEQPSS(0.018)S(0.05)S(0.932)PR ADREVQAEQPS(-41.23)S(-17.25)S(-12.68)S(12.68)PR 0 0 1 1 Q9Y388 Q9Y388 Q9Y388 RBMX2 RNA-binding motif protein, X-linked 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.989624023438 3 608.602171 1822.78468 37994.4506516512 1.8904 0.0011505 125510 76.388 125520 76.389 684.989778720643 27.868 0.45242 27.868 27.639 28.092 0 50 15 4 0.965853048534225 0.00449697902238405 0.0380627436456831 6.6576E-08 1 6188 171.9 143.93 4 41179000 9586 10494 9159.4 10440 9852.3 7359.7 9634.6 9678.1 10877 2697.9 9069.2 9913.1 9255.6 10673 9955.3 7548.6 9851.7 9699.2 10679 2764.3 1 1 1 1 1 1 1 1 1 1 132 2264 117 123 147 147 4192 ADSGEEENTK 10 Phospho (STY) _ADS(ph)GEEENTK_ ADS(1)GEEENTK ADS(43.86)GEEENT(-43.86)K 0 0 1 0 Q9BVG4 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.376586914063 2 580.211173 1158.40779 NaN NaN NaN NaN NaN NaN NaN NaN 30.287 1 30.287 29.787 30.787 0 NaN NaN NaN 0.0021482 1 6762 99.844 74.99 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 133 1841 118 124 148 148 3368 ADSGPTQPPLSLSPAPETK 19 Phospho (STY) _ADSGPTQPPLSLS(ph)PAPETK_ ADSGPTQPPLSLS(1)PAPETK ADS(-125.59)GPT(-114.32)QPPLS(-43.45)LS(43.45)PAPET(-52.88)K 0 0 1 0 O15027 O15027 O15027 SEC16A Protein transport protein Sec16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.426635742188 3 658.313627 1971.91905 34668.0249773717 1.6815 0.0011069 232070 152.78 232070 152.78 811.423506838448 70.345 0.83469 70.345 69.848 70.683 0 101 28 5 0.97695957842674 0.00267762427937366 0.0290530060903181 5.9139E-11 1 16440 180.84 159.22 5 97940000 12121 10050 11417 11437 11724 12329 10035 12018 10852 18319 11467 9501.9 11538 11673 11856 12348 10318 12619 10673 17528 1 1 1 1 1 1 1 1 1 1 134 75 119 125 149 149 127 ADSGYLFSGSRPPSQVSR 18 Phospho (STY) _ADS(ph)GYLFSGSRPPSQVSR_ ADS(1)GYLFSGSRPPSQVSR ADS(97.04)GY(-97.04)LFS(-99.56)GS(-118.66)RPPS(-137.45)QVS(-152.93)R 0 0 1 1 Q5SNT2 Q5SNT2 Q5SNT2 TMEM201 Transmembrane protein 201 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.692687988281 3 664.305466 1989.89457 36299.4018818175 2.0956 0.0013921 114990 76.387 114990 76.388 741.026852270661 61.153 0.61306 61.153 60.863 61.476 0 61 20 4 0.921572456197779 0.00192274559923979 0.0351123890482415 1.9621E-11 1 14327 205.02 188.88 6 20480000 10215 9672.6 11324 10114 9464.3 11722 10111 11415 9533.6 8255.1 9669.9 9139.9 11317 10384 9722.8 11690 10246 11710 9431.3 8037.3 1 1 1 1 1 1 1 1 1 1 135 1177 120 126 150 150 2037 ADSLLAVVK 9 Phospho (STY) _ADS(ph)LLAVVK_ ADS(1)LLAVVK ADS(145.55)LLAVVK 0 0 1 0 Q14151;Q15424 Q14151;Q15424 Q15424 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.425964355469 2 498.262283 994.510013 37193.104635659 2.4707 0.001231 459920 229.16 459930 229.16 727.425002754783 90.47 0.65488 90.47 90.192 90.847 0 67 22 4 0.914829012514097 0.00253825020837368 0.17827919999699 7.2771E-06 1 21078 145.55 107.26 1 20027000 15746 15387 16672 14841 17493 16869 17011 18122 18459 16755 14903 14533 16744 15305 17698 16866 17379 18634 18152 16196 1 1 1 1 1 1 1 1 1 1 136 1076;988 121 127 151 151 1668 ADSPVNGLPK 10 Phospho (STY) _ADS(ph)PVNGLPK_ ADS(1)PVNGLPK ADS(130.69)PVNGLPK 0 0 1 0 Q96S94 Q96S94 Q96S94 CCNL2 Cyclin-L2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 512.61279296875 3 359.83739 1076.49034 44119.4821638297 0.94857 0.00034133 424570 152.77 424570 152.78 512.612355940221 56.995 0.46283 56.995 56.813 57.276 -7.1054E-15 42 15 4 0.841937263539817 0.00263339830792616 0.0157481275932082 5.9546E-05 1 13324 130.69 88.13 1 22839000 11738 8680.4 11240 8522.1 14449 12091 13492 10633 8663.5 1338.1 11105 8199.2 11385 8817.2 14456 11944 13647 10762 8753.1 1506 1 1 1 1 1 1 1 1 1 1 137 1746 122 128 152 152 3203 ADTSQEICSPR 11 Phospho (STY) _ADTSQEICS(ph)PR_ ADTSQEICS(1)PR ADT(-75.22)S(-72.64)QEICS(72.64)PR 0 0 1 0 P52948 P52948 P52948 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.847412109375 2 672.268499 1342.52244 34497.9281282447 0.97117 0.00065289 170440 114.58 170440 114.58 786.849106515938 34.583 0.52124 34.583 34.282 34.803 0 47 17 4 0.931142109999462 0.000929562117964682 0.0101705039627844 7.5145E-05 1 7781 129.29 105.46 3 30540000 12903 17720 14291 16082 16234 13999 14634 14996 18387 4061.1 12215 16730 14331 16579 16341 14145 15076 15125 17983 4171.1 1 1 1 1 1 1 1 1 1 1 138 699 123 129 153 153 1169;1170 ADTSQEICSPR 11 Phospho (STY) _ADTS(ph)QEICSPR_ ADT(0.167)S(0.832)QEICSPR ADT(-6.97)S(6.97)QEICS(-34.43)PR 0 0 1 0 P52948 P52948 P52948 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.851806640625 2 672.268499 1342.52244 35653.6792628873 1.5269 0.0010265 170440 114.58 170440 114.58 786.850385343009 37.723 0.49734 37.723 37.538 38.035 0 39 16 4 0.375734290163296 0.000979945682952941 0.0188120089491325 0.01667 1 8527 70.225 56.106 3 20706000 25796 30598 25773 29429 19778 26377 22851 26789 32916 8082.2 24410 28898 25885 30239 20477 26596 23389 27099 32052 8230.4 1 1 1 1 1 1 1 1 1 1 139 699 123 129 154 154 1169;1170 ADVGRLSPEVK 11 Phospho (STY) _ADVGRLS(ph)PEVK_ ADVGRLS(1)PEVK ADVGRLS(117.48)PEVK 0 0 1 1 P49815 P49815 P49815 TSC2 Tuberin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.318725585938 3 417.542865 1249.60677 42018.5226219916 1.3227 0.00055227 365890 152.78 365890 152.78 570.31802925612 55.498 0.5206 55.498 55.251 55.771 0 52 17 4 0.987235753905121 0.00210240625791417 0.0463247390186217 9.9275E-05 1 12944 117.48 83.598 1 23592000 15650 12009 15047 13327 11114 14408 11887 13878 11854 2966.1 14807 11352 15140 13621 11521 14392 12062 14031 11697 3114.1 1 1 1 1 1 1 1 1 1 1 140 657 124 130 155 155 1108 ADVVPQQADPEFPRASPR 18 Phospho (STY) _ADVVPQQADPEFPRAS(ph)PR_ ADVVPQQADPEFPRAS(1)PR ADVVPQQADPEFPRAS(127.17)PR 0 0 1 1 Q5T5Y3 Q5T5Y3 Q5T5Y3 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.713500976563 3 687.324749 2058.95242 35951.9162415022 1.8481 0.0012702 111140 76.388 111140 76.389 764.046987131465 61.368 0.67368 61.368 61.067 61.741 -7.1054E-15 67 22 4 0.693726779033512 0.00326271232494164 0.0535452314223266 2.1416E-05 1 14363 127.17 115.32 1 52895000 17108 23579 15143 25409 11665 16185 12880 18879 26111 11052 16182 22284 15321 25829 12073 16690 13414 19166 25202 10844 1 1 1 1 1 1 1 1 1 1 141 1188 125 131 156 156 2080 AEAAASALADADADLEER 18 Unmodified _AEAAASALADADADLEER_ 0 0 0 0 O43633 O43633 O43633 CHMP2A Charged multivesicular body protein 2a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.334045410156 3 596.946393 1787.81735 37854.021620757 1.6767 0.0010009 127960 76.386 127960 76.387 674.00100242695 80.677 0.55346 80.677 80.374 80.928 0 58 18 4 0.666894581956311 0.00023505031106041 0.00598453399935263 0.014124 1 18923 67.227 51.336 1 12962000 5744.2 7325.3 5438.1 6079.9 5579.2 7275.4 5462.9 6327 7381.4 14055 5434.3 6912.9 5495 6337.9 5653.6 7253.7 5618.9 6806.7 7201.9 13381 1 1 1 1 1 1 1 1 1 1 142 121 126 132 157 157 AEAGAGSATEFQFR 14 Phospho (STY) _AEAGAGS(ph)ATEFQFR_ AEAGAGS(0.903)AT(0.097)EFQFR AEAGAGS(9.7)AT(-9.7)EFQFR 0 0 1 0 P46783;Q9NQ39 P46783 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.89990234375 2 761.32212 1520.62969 31705.1005159316 0.76169 0.00057989 150500 114.58 150500 114.58 875.901134091332 65.857 0.3288 65.857 65.659 65.988 0 23 10 3 0.929847221558832 0.000335588095415593 0.0123850207141445 8.1655E-05 1 15485 129.1 110.48 2 12984000 16215 14054 15237 16402 18183 15416 16785 15436 17866 15459 15340 13290 15432 16682 18260 15525 17182 15949 17583 14914 1 1 1 1 1 1 1 1 1 1 143 615 127 133 158 158 1010 AEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVR 41 Oxidation (M),Phospho (STY) _AEAPAGPALGLPS(ph)PEAESGVDRGEPEPM(ox)EVEEGELEIVPVR_ AEAPAGPALGLPSPEAESGVDRGEPEPM(1)EVEEGELEIVPVR AEAPAGPALGLPS(0.999)PEAES(0.001)GVDRGEPEPMEVEEGELEIVPVR AEAPAGPALGLPSPEAESGVDRGEPEPM(151.89)EVEEGELEIVPVR AEAPAGPALGLPS(32.94)PEAES(-32.94)GVDRGEPEPMEVEEGELEIVPVR 0 1 1 1 Q53F19 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1135.05590820313 4 1077.25817 4305.00359 29364.9290022147 1.0144 0.0010928 53182 57.291 53183 57.292 1135.05183137808 93.737 0.31599 93.737 93.562 93.878 0 25 10 4 0.935706241670935 0.000221288255277072 0.0185445366236427 7.8056E-09 1 21801 151.89 142.08 2 10982000 1713 1738.7 1489.6 1416.3 1669.6 1603.4 1510.3 1723.7 1646.8 25423 1620.1 1640.7 1514.7 1476.9 1681.6 1648.2 1548.7 2490.4 1619.1 23978 1 1 1 1 1 1 1 1 1 1 144 1148 128 134 159 159 153 1995 AEDGSVIDYELIDQDAR 17 Unmodified _AEDGSVIDYELIDQDAR_ 0 0 0 0 P07355 P07355 P07355 ANXA2 Annexin A2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.688842773438 3 636.965565 1907.87487 37286.170717132 1.8638 0.0011872 119920 76.387 119930 76.389 713.686814028675 79.038 0.55771 79.038 78.749 79.307 -1.4211E-14 50 18 4 0.989887723814621 0.00152680790524616 0.016773515782505 1.3536E-10 1 18512 176.33 160.94 1 16951000 4818 7030.5 5344.5 6392.4 5665.6 6136 5798.6 5240.9 6868.1 7122.4 4561.1 6637.8 5355.5 6598.4 5733.4 6164.1 5925.4 5506.3 6731.4 6827.8 1 1 1 1 1 1 1 1 1 1 145 318 129 135 160 160 AEDNADTLALVFEAPNQEK 19 Unmodified _AEDNADTLALVFEAPNQEK_ 0 0 0 0 P12004 P12004 P12004 PCNA Proliferating cell nuclear antigen MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.447448730469 3 692.335769 2073.98548 34217.8269884757 1.8607 0.0012882 220670 152.78 220670 152.78 845.446096050974 94.59 0.57468 94.59 94.253 94.827 1.4211E-14 64 19 4 0.893127378815645 0.00819231642222225 0.147512623836664 5.7734E-11 1 21996 185.09 165 1 37507000 10042 11603 11694 12764 8707 9700.5 8614.5 11231 12972 42267 9508.9 10968 11644 12986 9015 9958.8 8892.6 12480 12615 40060 1 1 1 1 1 1 1 1 1 1 146 368 130 136 161 161 AEEDEILNRSPR 12 Phospho (STY) _AEEDEILNRS(ph)PR_ AEEDEILNRS(1)PR AEEDEILNRS(128.45)PR 0 0 1 1 P27824 P27824 P27824 CANX Calnexin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.951293945313 3 503.562877 1507.6668 41049.7760786293 0.88928 0.00044781 151690 76.388 151700 76.388 579.950142524175 45.614 0.41165 45.614 45.436 45.848 0 29 13 3 0.956058536794008 0.000669968327641722 0.00684049232811548 4.1546E-05 1 10545 128.45 88.338 1 19683000 8387.9 9232.3 9373.6 10605 11333 8539.1 11501 10340 12397 2835.7 7940.8 8729.3 9406.3 10772 11388 8679.3 11724 10388 12194 2909.5 1 1 1 1 1 1 1 1 1 1 147 492 131 137 162 162 814 AEEDEILNRSPR 12 Phospho (STY) _AEEDEILNRS(ph)PR_ AEEDEILNRS(1)PR AEEDEILNRS(208.43)PR 0 0 1 1 P27824 P27824 P27824 CANX Calnexin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.95166015625 3 503.562877 1507.6668 40707.1826796245 0.23239 0.00011702 151690 76.388 151690 76.388 579.951251750344 47.292 4.66 47.292 46.714 51.374 0 493 164 6 0.993531723006438 0.0138094893823811 0.480525658683319 1.0409E-11 5 10875 208.43 182.84 1 17418000000 113920 120800 107280 120990 154220 114700 144870 126630 124150 13758 107770 114110 108960 124120 153580 115420 147350 126970 123380 15885 5 5 5 5 5 5 5 5 5 5 148 492 131 137 163;164;165;166;167 163 814 AEEFLTASQEAL 12 Phospho (STY) _AEEFLTAS(ph)QEAL_ AEEFLT(0.026)AS(0.974)QEAL AEEFLT(-15.68)AS(15.68)QEAL 0 0 1 0 Q14738 Q14738 Q14738 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.385131835938 2 694.802697 1387.59084 34679.3342578106 1.9868 0.0013805 164910 114.58 164910 114.58 809.383032878742 88.767 0.6617 88.767 88.479 89.141 0 39 22 2 0.923228145838119 0.00321298729716138 0.168733619553411 1.4178E-05 1 20696 136.7 124.85 2 22231000 5608.2 5778.3 5764.5 6256.2 11893 5797 11067 7520 5813.4 22230 5307.4 5461.3 5869 6387.1 11691 5894.6 11161 8146.1 5958.8 21106 1 1 1 1 1 1 1 1 1 1 149 1025 132 138 168 168 1752 AEEGIAAGGVMDVNTALQEVLK 22 Acetyl (Protein N-term) _(ac)AEEGIAAGGVMDVNTALQEVLK_ 1 0 0 0 P25398 P25398 P25398 RPS12 40S ribosomal protein S12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.773071289063 3 753.050864 2256.13076 34891.7083797818 1.4821 0.0011161 101440 76.388 101440 76.389 829.772935196496 102.51 0.20635 102.51 102.37 102.57 0 19 6 5 0.947524072707129 0.00766952080899297 0.100369561174871 5.6961E-12 1 24159 115.57 99.844 1 33758000 10821 10049 10151 10351 8329.1 11636 9662.3 10416 11211 26207 10237 9495 10240 10630 8580.3 11640 9813.7 11285 10996 24918 1 1 1 1 1 1 1 1 1 1 150 475 133 139 169 169 AEEGKSPFR 9 Phospho (STY) _AEEGKS(ph)PFR_ AEEGKS(1)PFR AEEGKS(52.07)PFR 0 0 1 1 O15014 O15014 O15014 ZNF609 Zinc finger protein 609 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.90625 2 550.742246 1099.46994 34194.9946788265 1.7324 0.00095412 416100 229.16 416100 229.16 779.905559488231 43.166 0.32593 43.166 43 43.326 0 19 10 2 0.72802699965823 0.000364403327113812 0.00978292783774897 0.040329 1 9885 52.071 24.742 1 12264000 22765 31213 22771 32595 23671 23256 20922 30479 36138 86921 21542 29493 22935 33233 23944 23981 21845 32912 35012 82552 1 1 1 1 1 1 1 1 1 1 151 74 134 140 170 170 120 AEEKSPISINVK 12 Phospho (STY) _AEEKS(ph)PISINVK_ AEEKS(1)PISINVK AEEKS(39.08)PIS(-39.08)INVK 0 0 1 1 Q9UK58 Q9UK58 Q9UK58 CCNL1 Cyclin-L1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.73388671875 3 465.56908 1393.68541 37805.777019735 1.8078 0.00084168 492220 229.16 492220 229.16 694.732040124703 64.631 0.72396 64.631 64.271 64.995 0 88 24 5 0.98138503489851 0.00106366461917711 0.0122761355465913 4.6507E-05 1 15241 127.22 97.877 2 138080000 8972.5 10990 10682 10517 9060.4 10264 10091 10021 11062 6575.2 8496.7 10379 10640 10823 9305.8 10309 10249 10259 10874 6423.2 1 1 1 1 1 1 1 1 1 1 152 2166 135 141 171 171 3898 AEEQPQVELFVK 12 Acetyl (Protein N-term) _(ac)AEEQPQVELFVK_ 1 0 0 0 O00299 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.460510253906 2 729.877382 1457.74021 35156.6856239168 1.7541 0.0012803 156990 114.58 156990 114.58 844.960101921791 90.84 0.52148 90.84 90.533 91.055 0 56 17 4 0.985940301504406 0.00118484658630782 0.0574662005438727 1.4014E-06 1 21143 142.92 119.4 1 20771000 7394.4 11945 7814.1 10980 7418.9 8837.7 6208.9 8851.8 11971 28727 6998.6 11278 7837.1 11299 7540.4 9008.4 6536 9744.1 11567 27254 1 1 1 1 1 1 1 1 1 1 153 41 136 142 172 172 AEFEDQDDEAR 11 Unmodified _AEFEDQDDEAR_ 0 0 0 0 Q14692 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.347839355469 2 662.768028 1323.5215 34466.8515887101 1.3755 0.00091165 172880 114.58 172880 114.58 777.348226994623 39.676 0.4654 39.676 39.423 39.889 0 39 15 3 0.973903876595144 0.00125090765264052 0.0392125153476041 4.6358E-21 1 9008 275.67 221.84 1 15734000 22456 22309 21369 25076 16897 22969 17515 22107 23633 4849 21245 21090 21526 25545 17426 23115 17967 22355 23060 5077.5 1 1 1 1 1 1 1 1 1 1 154 1023 137 143 173 173 AEFTSPPSLFK 11 Phospho (STY) _AEFTS(ph)PPSLFK_ AEFT(0.147)S(0.853)PPSLFK AEFT(-7.65)S(7.65)PPS(-53.09)LFK 0 0 1 0 Q6UN15 Q6UN15 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 587.979248046875 3 435.20385 1302.58972 41367.5940757228 1.5393 0.00066991 351040 152.78 351040 152.78 587.979088507726 94.872 1.5708 94.872 93.849 95.42 0 138 54 3 0.936368386587625 0.00237763352397229 0.088544171346724 0.0067997 1 21975 80.31 53.795 3 17131000 3056.1 4735.6 3398.9 4029.9 2958.4 3119.4 3156.1 4173 4676.6 4467 2893.2 4469.5 3397.8 4166.2 3032.5 3189 3244.8 4279.6 4550 4302.8 1 1 1 1 1 1 1 1 1 1 155 1281 138 144 174 174 2279 AEGEWEDQEALDYFSDKESGK 21 Phospho (STY) _AEGEWEDQEALDYFS(ph)DKESGK_ AEGEWEDQEALDYFS(1)DKESGK AEGEWEDQEALDY(-74.13)FS(38.59)DKES(-38.59)GK 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1067.50830078125 3 838.339118 2511.99552 29930.0771809285 1.8318 0.0015357 273350 229.16 273360 229.16 1068.17148032739 84.805 1.6351 84.805 84.524 86.159 0 177 56 6 0.977614776605487 0.00362948756950316 0.133776054795378 2.1355E-11 1 19789 185.7 173.96 3 34587000 2793.6 2777.6 3161.7 3104.5 2567.5 3025.2 3189.9 5620.8 3293 98703 2644.8 2625.7 3156.4 3166.3 2649.5 3254.3 3219.9 8511.6 3244.8 93071 1 1 1 1 1 1 1 1 1 1 156 2072 139 145 175 175 3743 AEGEWEDQEALDYFSDKESGK 21 Phospho (STY) _AEGEWEDQEALDYFS(ph)DKESGK_ AEGEWEDQEALDYFS(0.999)DKES(0.001)GK AEGEWEDQEALDY(-76.33)FS(31)DKES(-31)GK 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.129150390625 4 629.006158 2511.99552 35221.027495283 1.8316 0.0011521 273250 171.87 273250 171.87 801.129995467676 84.798 1.6915 84.798 84.496 86.187 -1.4211E-14 194 58 6 0.961459786687282 0.00192858955615582 0.0277747783241752 2.2321E-16 2 19981 224.53 209.59 3 36577000 6559.1 4827.3 6488.5 5981.1 6150.7 6106.2 6115.1 7235.9 6593.8 87153 6206.3 4566.8 6533.4 6072.8 6261.6 6293.2 6239.5 9840.5 6485.8 82233 2 2 2 2 2 2 2 2 2 2 157 2072 139 145 176;177 177 3743 AEGSDVANAVLDGADCIMLSGETAK 25 Oxidation (M) _AEGSDVANAVLDGADCIM(ox)LSGETAK_ AEGSDVANAVLDGADCIM(1)LSGETAK AEGSDVANAVLDGADCIM(124.28)LSGETAK 0 1 0 0 P14618 P14618 P14618 PKM Pyruvate kinase PKM MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 990.497680664063 3 837.384354 2509.13123 30990.9154861796 1.5222 0.0012747 182440 152.78 182450 152.78 990.49517872515 91.786 0.34242 91.786 91.627 91.969 0 25 11 3 0.971284031305206 0.00130492923880166 0.0243037818599956 3.4007E-05 2 21393 124.28 103.08 1 8373700 6332.5 8152.9 7539.2 8108.4 10459 5523.1 12570 9663.9 8425.4 58242 5996.7 7701.5 7561.9 8286.7 10467 5813.1 12580 11288 8489.1 55066 2 2 2 2 2 2 2 2 2 2 158 388 140 146 178;179 178 51 AEGSPNQGK 9 Phospho (STY) _AEGS(ph)PNQGK_ AEGS(1)PNQGK AEGS(153.74)PNQGK 0 0 1 0 Q9P2E9 Q9P2E9 Q9P2E9 RRBP1 Ribosome-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.360778808594 2 484.197671 966.38079 37337.7402300508 2.6175 0.0012674 473280 229.16 473290 229.16 713.360001210311 28.657 0.40174 28.657 28.465 28.866 0 36 13 4 0.986616479362307 0.00277773600434128 0.0505086844242803 5.3237E-06 1 6367 153.74 97.334 1 25806000 17706 13554 18797 12772 22807 17966 24864 21004 13623 2942.3 16759 12799 18918 13245 22926 17820 24903 21040 13918 3256.6 1 1 1 1 1 1 1 1 1 1 159 2109 141 147 180 180 3806 AELGEADEAELQR 13 Acetyl (Protein N-term) _(ac)AELGEADEAELQR_ 1 0 0 0 Q9Y5J9 Q9Y5J9 Q9Y5J9 TIMM8B Mitochondrial import inner membrane translocase subunit Tim8 B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.845275878906 2 736.84681 1471.67907 36501.2624642444 1.6037 0.0011817 -0.66516 -0.00049012 0.93855 0.00069157 736.84660056891 60.365 0.63601 60.365 59.937 60.573 0 57 21 4 0.989393470067539 0.0016692028022442 0.0264892308156962 1.0829E-10 1 14133 120.36 102.8 1 17551000 10584 11934 10741 11594 9072.9 12464 8662 9100.3 13038 8965.2 10016 11272 10785 11939 9304 12430 8956.8 9528.8 12679 8652.4 1 1 1 1 1 1 1 1 1 1 160 2294 142 148 181 181 AELGMGDSTSQSPPIKR 17 Oxidation (M),Phospho (STY) _AELGM(ox)GDSTSQS(ph)PPIKR_ AELGM(1)GDSTSQSPPIKR AELGMGDST(0.004)S(0.055)QS(0.941)PPIKR AELGM(66.54)GDSTSQSPPIKR AELGMGDS(-35.05)T(-23.9)S(-12.31)QS(12.31)PPIKR 0 1 1 1 Q9NR19 Q9NR19 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.061401367188 3 623.951924 1868.83394 35643.3287370615 1.1027 0.00068801 244850 152.77 244850 152.78 777.061642588325 48.582 0.73004 48.582 48.123 48.853 0 52 24 3 0.856174753330068 0.000261178019538613 0.00183044527260205 0.010926 1 11291 66.536 57.006 4 28046000 16432 25404 13750 26964 20872 14554 23131 20251 26774 13057 15539 24007 14091 27391 20796 15238 23536 20486 26264 12764 1 1 1 1 1 1 1 1 1 1 161 2011 143 149 182 182 213 3652 AELGMGDSTSQSPPIKR 17 Phospho (STY) _AELGMGDSTSQS(ph)PPIKR_ AELGMGDSTSQS(1)PPIKR AELGMGDS(-73.47)T(-56.55)S(-41.01)QS(41.01)PPIKR 0 0 1 1 Q9NR19 Q9NR19 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.730407714844 3 618.620286 1852.83903 35657.2293814102 1.6871 0.0010437 246960 152.77 246960 152.78 771.395199915543 58.045 0.95477 58.045 57.449 58.404 0 124 32 5 0.989668010241372 0.00481732195709978 0.0225016337913245 1.0706E-10 1 13557 184.95 167.04 4 68454000 14214 42332 14830 42145 21523 17725 23400 29637 47602 26699 13452 39988 14983 42892 21496 19057 24392 30071 45943 25826 1 1 1 1 1 1 1 1 1 1 162 2011 143 150 183 183 3652 AELKLSR 7 Phospho (STY) _AELKLS(ph)R_ AELKLS(1)R AELKLS(42.21)R 0 0 1 1 Q92625 Q92625 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 452.266784667969 3 299.491554 895.452832 47313.2464010432 0.8035 0.00024064 510110 152.78 510120 152.78 452.266682813466 49.891 0.47148 49.891 49.628 50.099 0 39 15 3 0.978357329624403 0.00287770630584727 0.0793561968218959 0.040375 1 11578 42.21 16.972 1 17643000 33371 13278 34533 12420 7609 32580 6539 17737 13510 1195.2 31582 12538 34374 13129 9302.8 31573 6898.4 18403 13035 1535.9 1 1 1 1 1 1 1 1 1 1 163 1613 144 151 184 184 2975 AENDVDNELLDYEDDEVETAAGGDGAEAPAK 31 Acetyl (Protein N-term) _(ac)AENDVDNELLDYEDDEVETAAGGDGAEAPAK_ 1 0 0 0 Q13838 Q13838 Q13838 DDX39B Spliceosome RNA helicase DDX39B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1165.52404785156 3 1088.79893 3263.37496 29129.1978288499 1.7369 0.0018911 70158 76.388 70159 76.39 1165.8554484614 92.237 0.57231 92.237 91.94 92.512 0 86 19 6 0.962271787850436 0.00275376207239443 0.0526707511882952 1.9642E-05 2 21451 110.61 97.157 1 48246000 10454 12225 10072 11488 10986 11361 11368 11817 12054 35035 9891.1 11545 10176 11839 11101 11465 11572 12891 11864 33264 2 2 2 2 2 2 2 2 2 2 164 980 145 152 185;186 186 AENDVDNELLDYEDDEVETAAGGDGAEAPAKK 32 Acetyl (Protein N-term) _(ac)AENDVDNELLDYEDDEVETAAGGDGAEAPAKK_ 1 0 0 1 Q13838 Q13838 Q13838 DDX39B Spliceosome RNA helicase DDX39B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 963.958251953125 4 848.874758 3391.46993 31566.1518825505 1.7854 0.0015156 134980 114.58 134980 114.58 963.957055619095 87.374 1.0279 87.374 86.676 87.704 0 125 34 7 0.985322579491058 0.00304923641731292 0.025244751122047 5.3887E-18 1 20343 179.28 170.07 1 100190000 8128.4 8334.4 8432.2 8936.7 10863 8258.2 11835 11245 8017.5 19595 7692.7 7876.6 8504.9 9128.3 10890 8382.2 11895 11754 8072.8 18711 1 1 1 1 1 1 1 1 1 1 165 980 146 153 187 187 AENDVDNELLDYEDDEVETAAGGDGAEAPAKK 32 Acetyl (Protein N-term) _(ac)AENDVDNELLDYEDDEVETAAGGDGAEAPAKK_ 1 0 0 1 Q13838 Q13838 Q13838 DDX39B Spliceosome RNA helicase DDX39B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1284.939453125 3 1131.49725 3391.46993 28484.7160458868 1.7258 0.0019527 135020 152.77 135020 152.78 1284.94033027196 87.355 0.58878 87.355 87.057 87.646 0 77 19 6 0.991412267505655 0.00372913551020285 0.035781898831849 4.2122E-46 1 20376 292.87 274.77 1 48281000 10342 9096.4 8694.8 8372.1 12667 11152 13527 10921 11257 20411 9779.8 8588.9 8900.1 8685.1 12630 11090 13666 11578 11203 19472 1 1 1 1 1 1 1 1 1 1 166 980 146 153 188 188 AEPPSPVHCVAAAAPTATVSEKEPFGK 27 Acetyl (Protein N-term),Phospho (STY) _(ac)AEPPS(ph)PVHCVAAAAPTATVSEKEPFGK_ AEPPS(1)PVHCVAAAAPTATVSEKEPFGK AEPPS(71.95)PVHCVAAAAPT(-71.95)AT(-84.16)VS(-95.46)EKEPFGK 1 0 1 1 Q6PCB5 Q6PCB5 Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.174743652344 4 718.341217 2869.33576 33614.8798794185 1.9079 0.0013705 159510 114.58 159510 114.58 833.17325727437 78.221 1.6653 78.221 77.14 78.805 1.4211E-14 137 57 6 0.880812301343149 0.0139698111918103 0.173325351913547 6.8725E-12 1 18316 143.05 130.41 4 92326000 25771 30264 23577 29135 23392 24702 25856 27953 32879 14622 24378 28583 23869 29912 23790 25026 26393 28354 32144 14415 1 1 1 1 1 1 1 1 1 1 167 1264 148 154 189 189 2241 AEPQPPSGGLTDEAALSCCSDADPSTK 27 Acetyl (Protein N-term) _(ac)AEPQPPSGGLTDEAALSCCSDADPSTK_ 1 0 0 0 Q04760 Q04760 Q04760 GLO1 Lactoylglutathione lyase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1012.13134765625 3 935.072616 2802.19602 30666.8968648703 1.7384 0.0016256 81690 76.386 81691 76.387 1011.79364506662 68.162 1.325 68.162 67.559 68.884 0 156 44 5 0.984501696070165 0.00385453301356524 0.0413131635278996 0.029126 1 15938 53.844 25.432 1 83833000 3542.7 5221.3 4395.4 4619.6 11247 4698.4 10038 8121 5883.3 20872 3355.5 4928.9 4458.5 4781.2 10988 4788.1 10162 8642.2 5981.3 19841 1 1 1 1 1 1 1 1 1 1 168 866 149 155 190 190 AEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTK 39 Acetyl (Protein N-term),Phospho (STY) _(ac)AEPSAATQSHSISSSSFGAEPSAPGGGGS(ph)PGACPALGTK_ AEPS(0.088)AAT(0.088)QS(0.088)HS(0.088)IS(0.088)S(0.088)S(0.088)S(0.088)FGAEPS(0.088)APGGGGS(0.209)PGACPALGTK AEPS(-3.75)AAT(-3.75)QS(-3.75)HS(-3.75)IS(-3.75)S(-3.75)S(-3.75)S(-3.75)FGAEPS(-3.75)APGGGGS(3.75)PGACPALGT(-32.12)K 1 0 1 0 O95197 O95197 O95197 RTN3 Reticulon-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 981.454284667969 4 923.909717 3691.60976 31199.5915711181 1.6456 0.0015204 62008 57.29 62010 57.292 981.701553447884 69.208 0.48894 69.208 68.971 69.46 0 73 16 6 0.974465256072323 0.00316704783049862 0.0452583835728167 5.6835E-06 1 16259 46.817 32.409 11 26796000 2951.4 2819.8 2427.5 2984.8 3973.1 2711.3 6230.9 6667.6 2824.7 29611 2790.8 2664.7 2497.6 3050.2 3969.4 2835.2 6140.8 7427 2931.6 28037 1 1 1 1 1 1 1 1 1 1 169 234 150 156 191 191 404 AEPSEVDMNSPK 12 Phospho (STY) _AEPSEVDMNS(ph)PK_ AEPSEVDMNS(1)PK AEPS(-58.49)EVDMNS(58.49)PK 0 0 1 0 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.4423828125 2 692.278532 1382.54251 32542.4757054402 2.6564 0.001839 331030 229.16 331030 229.16 921.440675939661 51.18 0.43943 51.18 50.992 51.431 -7.1054E-15 32 14 3 0.98547418811709 0.0006698509133453 0.0169017920140894 1.0845E-10 1 11907 183 142.94 2 9200500 15415 21768 14954 18538 9946.8 15494 10866 14352 20191 8667.9 14585 20545 15025 19182 10412 15668 11272 14701 19527 8494 1 1 1 1 1 1 1 1 1 1 170 2012 151 157 192 192 3654 AEQDVENDLLDYDEEEEPQAPQESTPAPPK 30 Acetyl (Protein N-term) _(ac)AEQDVENDLLDYDEEEEPQAPQESTPAPPK_ 1 0 0 0 O00148 O00148 O00148 DDX39A ATP-dependent RNA helicase DDX39A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1219.56494140625 3 1142.50575 3424.49541 28773.0892558541 1.6882 0.0019287 66859 76.387 66861 76.389 1219.56173046037 88.621 0.57259 88.621 88.366 88.939 0 78 19 6 0.971290708778564 0.00537547618059621 0.1235842357884 7.0851E-05 2 20665 72.425 60.684 1 19284000 5008.1 4905.4 4937.4 4046 4875.4 5780.6 5264.5 5513.1 5569.8 36716 4738.7 4629 4975.7 4234.6 4957 5782.5 5348.5 6646.7 5482.8 34701 2 2 2 2 2 2 2 2 2 2 171 31 152 158 193;194 193 AEQDVENDLLDYDEEEEPQAPQESTPAPPKK 31 Acetyl (Protein N-term) _(ac)AEQDVENDLLDYDEEEEPQAPQESTPAPPKK_ 1 0 0 1 O00148 O00148 O00148 DDX39A ATP-dependent RNA helicase DDX39A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1003.99401855469 4 889.154871 3552.59038 31119.7562359871 1.488 0.0013231 128870 114.58 128870 114.58 1003.98874510459 83.237 0.64254 83.237 82.972 83.615 0 96 21 6 0.982909738219327 0.00344816660345507 0.0161524275264004 1.2178E-06 2 19432 103.12 93.146 1 44987000 9888.8 10309 10629 8202.1 10641 9768.5 9629.3 11719 9383.3 72034 9360.1 9726.5 10659 8575.4 10783 9881.6 9843.7 13850 9269 68100 2 2 2 2 2 2 2 2 2 2 172 31 153 159 195;196 195 AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK 32 Acetyl (Protein N-term) _(ac)AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK_ 1 0 0 1 P52565 P52565 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1017.509765625 4 902.426221 3605.67578 31581.2774407662 1.3745 0.0012404 126970 114.58 126970 114.58 1017.50953387912 78.788 0.61551 78.788 78.432 79.048 0 65 20 5 0.959808859056882 0.00193938937844889 0.0199261834818516 1.1612E-18 1 18466 236.03 224.03 1 19678000 4376.5 3043 3300.6 3267.7 3784.8 3845.6 5480.5 3654 3442.7 12635 4137.2 2875.9 3394.5 3350.7 3834.3 3850.2 5441.4 4053.4 3483.3 11982 1 1 1 1 1 1 1 1 1 1 173 691 154 160 197 197 AEQGSEEEGEGEEEEEEGGESK 22 Phospho (STY) _AEQGS(ph)EEEGEGEEEEEEGGESK_ AEQGS(1)EEEGEGEEEEEEGGESK AEQGS(216.25)EEEGEGEEEEEEGGES(-216.25)K 0 0 1 0 Q8NE71 Q8NE71 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 965.0673828125 3 811.95729 2432.85004 31931.8431333885 2.2076 0.0017925 188160 152.78 188160 152.78 964.732518952586 38.302 0.43159 38.302 38.093 38.524 0 43 14 4 0.982088805266545 0.00206991369924348 0.0326153293826163 9.402E-24 1 8670 267.63 252.88 2 22081000 5780.4 11293 8350.2 10731 7407.7 8629.2 7799.4 9254 12180 5213.6 5479.4 10665 8249.7 11019 7582.7 8760.9 8040.3 9415.3 11832 5123.4 1 1 1 1 1 1 1 1 1 1 174 1514 155 161 198 198 2778 AEQLSPGK 8 Acetyl (Protein N-term),Phospho (STY) _(ac)AEQLS(ph)PGK_ AEQLS(1)PGK AEQLS(109.29)PGK 1 0 1 0 O15541 O15541 O15541 RNF113A RING finger protein 113A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.794677734375 2 476.21279 950.411027 40855.6842348698 2.2042 0.0010497 240610 114.58 240610 114.58 590.794059763073 45.965 0.55494 45.965 45.703 46.258 0 59 18 4 0.831147374933182 0.00340482280127458 0.0880986115506983 1.892E-05 1 10577 109.29 109.29 1 62128000 17073 28535 17767 27861 17681 18515 16791 21231 27506 4965.3 16158 26952 17848 28498 17945 19019 17428 21340 26686 5166.8 1 1 1 1 1 1 1 1 1 1 175 97 156 162 199 199 163 AEQSLHDLQER 11 Phospho (STY) _AEQS(ph)LHDLQER_ AEQS(1)LHDLQER AEQS(79.8)LHDLQER 0 0 1 0 Q13586 Q13586 Q13586 STIM1 Stromal interaction molecule 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 545.596740722656 3 469.208434 1404.60347 42599.3655549233 0.77249 0.00036246 162800 76.388 162800 76.388 545.596159496755 40.473 0.72803 40.473 40.238 40.966 0 55 24 4 0.591337995017569 0.00326112907082667 0.0379731447419226 0.0069586 1 9239 79.805 63.686 1 44754000 24867 28454 28167 31291 25526 27409 26590 29316 34304 4572.1 23543 26896 28143 31893 26082 27679 27226 29470 33521 4983.7 1 1 1 1 1 1 1 1 1 1 176 969 157 163 200 200 1642 AESGKEEDKK 10 Phospho (STY) _AES(ph)GKEEDKK_ AES(1)GKEEDKK AES(53)GKEEDKK 0 0 1 2 Q99442 Q99442 Q99442 SEC62 Translocation protein SEC62 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.047546386719 4 300.884055 1199.50711 43427.1586508889 1.4891 0.00044805 761630 229.16 761630 229.16 530.047343709081 33.844 0.48716 33.844 33.618 34.105 0 52 16 4 0.760083791719253 0.00195231611134095 0.0263825112248638 0.026276 1 7566 53.001 29.52 1 21792000 14276 13282 15288 14101 14666 13381 15682 15392 11898 4637.1 13512 12552 15330 14417 14931 13479 15811 15501 11901 4722.6 1 1 1 1 1 1 1 1 1 1 177 1764 158 164 201 201 3249 AESPEEVACR 10 Phospho (STY) _AES(ph)PEEVACR_ AES(1)PEEVACR AES(227.14)PEEVACR 0 0 1 0 Q7Z6Z7 Q7Z6Z7 Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.821533203125 2 614.23921 1226.46387 36829.7000073405 1.2022 0.00073843 186540 114.58 186540 114.58 728.820995874351 36.877 0.72607 36.877 36.485 37.211 0 77 24 4 0.983157276866119 0.00176101809035938 0.0323217357145265 2.6654E-14 1 8287 227.14 187.73 1 38182000 27024 16329 26571 17017 21723 25309 20783 20839 15941 3482.5 25570 15430 26720 17564 22313 24949 21068 21181 15934 3761.4 1 1 1 1 1 1 1 1 1 1 178 1356 159 165 202 202 2464 AESPESSAIESTQSTPQK 18 Phospho (STY) _AES(ph)PESSAIESTQSTPQK_ AES(1)PESSAIESTQSTPQK AES(33.3)PES(-33.3)S(-62.16)AIES(-117.5)T(-141.81)QS(-158.47)T(-179.1)PQK 0 0 1 0 Q9NTI5 Q9NTI5 Q9NTI5 PDS5B Sister chromatid cohesion protein PDS5 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.061096191406 3 652.952647 1955.83611 34455.6687386601 1.466 0.00095723 233980 152.78 233980 152.78 806.062249586173 50.825 0.92654 50.825 50.477 51.403 0 112 31 5 0.948247720140726 0.00470098864369852 0.0450061004493304 9.4425E-12 1 11787 209.39 192.31 7 144410000 30276 17195 32398 14411 22569 32838 20090 23244 17681 10094 28657 16228 32376 15263 23446 31991 20503 23991 17548 10042 1 1 1 1 1 1 1 1 1 1 179 2031 160 166 203 203 3691;4781 AESPESSAIESTQSTPQK 18 2 Phospho (STY) _AES(ph)PESSAIESTQST(ph)PQK_ AES(0.999)PES(0.001)SAIESTQS(0.052)T(0.948)PQK AES(30.53)PES(-30.53)S(-51.02)AIES(-66.92)T(-42.82)QS(-12.61)T(12.61)PQK 0 0 2 0 Q9NTI5 Q9NTI5 Q9NTI5 PDS5B Sister chromatid cohesion protein PDS5 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 832.719665527344 3 679.60809 2035.80244 34955.473991472 1.3717 0.00093222 224800 152.78 224800 152.78 832.718459901335 50.788 0.65884 50.788 50.477 51.136 -7.1054E-15 33 22 2 0.623745864630735 0.000958912254672784 0.0180881389628175 2.3747E-11 1 11805 208.72 190.8 21 19021000 15672 12970 17650 11941 18101 15184 20530 17920 12227 15999 14837 12247 17669 12376 18369 15140 20553 18351 12417 15480 1 1 1 1 1 1 1 1 1 1 180 2031 160 167 204 204 3691;4781 AESPSPAPPPGLR 13 Phospho (STY) _AES(ph)PSPAPPPGLR_ AES(0.998)PS(0.002)PAPPPGLR AES(26.61)PS(-26.61)PAPPPGLR 0 0 1 0 Q9BUA3 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.902038574219 2 678.321392 1354.62823 34788.961257155 1.5625 0.0010599 168920 114.58 168920 114.58 792.902243173615 48.713 0.94578 48.713 48.364 49.31 0 73 32 3 0.664589265915635 0.000591391133842086 0.00588376192851543 3.5126E-07 1 11268 164 90.498 2 37198000 19398 21266 20157 20688 23124 19428 24010 23910 22361 19704 18359 20086 20291 21257 23302 19623 24352 24404 22133 19107 1 1 1 1 1 1 1 1 1 1 181 1832 161 168 205 205 3352 AESSESFTMASSPAQR 16 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)AESSESFTM(ox)ASS(ph)PAQR_ AESSESFTM(1)ASSPAQR AESSESFTMAS(0.028)S(0.972)PAQR AESSESFTM(143.69)ASSPAQR AES(-105.46)S(-96.54)ES(-76.36)FT(-48.93)MAS(-15.4)S(15.4)PAQR 1 1 1 0 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.36279296875 2 912.361313 1822.70807 32762.0319197959 1.2437 0.0011347 0.092021 8.3957E-05 1.3357 0.0012186 912.361030111432 43.536 0.69559 43.536 43.151 43.847 0 56 23 3 0.7082654809788 0.00152813493336189 0.0340292821541635 8.0338E-16 1 9918 143.69 124.02 6 45589000 18281 18791 22264 22196 16732 22670 15519 20240 23806 6753.3 17313 17771 22119 22590 17297 22685 16082 20600 23138 6827.4 1 1 1 1 1 1 1 1 1 1 182 647 162 169 206 206 82 1068 AESSESFTMASSPAQR 16 Acetyl (Protein N-term),Phospho (STY) _(ac)AESSESFTMASS(ph)PAQR_ AESSESFTMAS(0.048)S(0.952)PAQR AES(-137.36)S(-128.26)ES(-87.17)FT(-53.89)MAS(-12.94)S(12.94)PAQR 1 0 1 0 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 904.364196777344 2 904.363856 1806.71316 33153.1264444522 1.3168 0.0011909 -0.5557 -0.00050255 0.76113 0.00068834 904.363577710915 55.881 1.1282 55.881 55.536 56.664 0 130 37 5 0.982200121367924 0.00135633934354208 0.0370176447100023 1.8808E-42 1 12999 246.34 213.14 6 277130000 6101.3 6727.6 6731.1 7457.6 8548.1 6391 8051.7 6972.5 7418.8 12809 5775.8 6359.5 6763 7595.5 8559.8 6485.1 8202.5 7357.3 7346.9 12223 1 1 1 1 1 1 1 1 1 1 183 647 162 170 207 207 1068 AESSSGGGTVPSSAGILEQGPSPGDGSPPKPK 32 Phospho (STY) _AESSSGGGTVPSSAGILEQGPSPGDGS(ph)PPKPK_ AESSSGGGTVPSSAGILEQGPS(0.004)PGDGS(0.996)PPKPK AES(-239.64)S(-239.88)S(-235.75)GGGT(-217.39)VPS(-183.79)S(-177.43)AGILEQGPS(-24.18)PGDGS(24.18)PPKPK 0 0 1 1 Q68EM7 Q68EM7 Q68EM7 ARHGAP17 Rho GTPase-activating protein 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 926.979187011719 4 754.604027 3014.387 32469.7987382553 1.8348 0.0013845 227770 171.87 227770 171.87 926.726945695738 65.282 0.57806 65.282 64.966 65.544 0 83 19 6 0.983739252530961 0.00436495540813081 0.102883992394605 1.6919E-25 1 15322 264.52 252.99 8 28156000 8772.5 4515.9 10217 5425 7213.7 11052 8264.1 7684.6 5659.7 11130 8306.5 4271.2 10170 5605.1 7510.3 10806 8290.4 8174.1 5694.9 10658 1 1 1 1 1 1 1 1 1 1 184 1230 163 171 208 208 2169 AETLEFNDVYQEVK 14 Acetyl (Protein N-term) _(ac)AETLEFNDVYQEVK_ 1 0 0 0 Q08945 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 978.995971679688 2 863.91215 1725.80975 31553.073821002 1.7263 0.0014914 132630 114.58 132630 114.58 978.995570997296 95.847 0.5188 95.847 95.538 96.056 0 55 17 4 0.685691772789547 0.001743488673065 0.108053008769904 7.8319E-23 1 22278 164.64 131.38 1 19537000 5110.8 7253.8 4642.7 6090.1 6935.4 5287.4 8779.7 8588 8059.4 25333 4834.4 6845.8 4733.4 6311.2 6928.1 5424.8 8828.7 9249.8 7982.7 24052 1 1 1 1 1 1 1 1 1 1 185 890 164 172 209 209 AETLSGLGDSGAAGAAALSSASSETGTR 28 Acetyl (Protein N-term),Phospho (STY) _(ac)AETLSGLGDSGAAGAAALSSASS(ph)ETGTR_ AETLSGLGDSGAAGAAALSSAS(0.268)S(0.658)ET(0.052)GT(0.021)R AET(-125.16)LS(-125.16)GLGDS(-124.96)GAAGAAALS(-42.73)S(-32.37)AS(-3.9)S(3.9)ET(-10.98)GT(-14.86)R 1 0 1 0 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.397155761719 3 873.059014 2616.15521 33637.8406553964 1.3341 0.0011647 0.23658 0.00020655 1.5707 0.0013713 873.394251989376 82.933 0.4648 82.933 82.768 83.233 0 47 15 4 0.923155899355404 0.00394407374683148 0.0128637514899145 3.288E-12 1 19399 141.36 127.63 9 15660000 5091.3 5465.7 4948.1 5641.3 5511.4 4966.6 5894 6014.2 5000.8 12102 4817.2 5164.3 4998.3 5770.8 5564.3 5044.3 5956.8 6356.7 4972.2 11534 1 1 1 1 1 1 1 1 1 1 186 1076 165 173 210 210 1859;1860 AETLSGLGDSGAAGAAALSSASSETGTRR 29 Acetyl (Protein N-term),Phospho (STY) _(ac)AETLSGLGDSGAAGAAALSS(ph)ASSETGTRR_ AETLSGLGDSGAAGAAALS(0.041)S(0.619)AS(0.163)S(0.163)ET(0.011)GT(0.003)RR AET(-180.32)LS(-159.64)GLGDS(-128.38)GAAGAAALS(-11.79)S(5.8)AS(-5.8)S(-5.8)ET(-17.42)GT(-23.18)RR 1 0 1 1 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 925.42919921875 3 925.092718 2772.25632 32602.536575846 1.5041 0.0013914 0.27582 0.00025516 1.7799 0.0016466 925.42675055098 76.505 0.54986 76.505 76.245 76.795 0 66 18 5 0.961549899273757 0.00845766939305527 0.202430624124347 1.932E-26 1 17930 200.59 184.35 9 31671000 4384.3 3981.6 3323.2 4435.8 3512.7 4568.7 3464.9 3270.6 3433.7 21272 4144.7 3763.9 3409.5 4529 3552.9 4597.3 3528.4 3971.9 3389.4 20106 1 1 1 1 1 1 1 1 1 1 187 1076 166 174 211 211 1859;1860 AETPPLPIPPPPPDIQPLER 20 Phospho (STY) _AET(ph)PPLPIPPPPPDIQPLER_ AET(1)PPLPIPPPPPDIQPLER AET(88.24)PPLPIPPPPPDIQPLER 0 0 1 0 Q8IX15 Q8IX15 Q8IX15 HOMEZ Homeobox and leucine zipper protein Homez MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.779235839844 3 752.055488 2253.14464 34705.821317646 1.857 0.0013966 101570 76.388 101570 76.389 828.77747532964 97.376 1.3043 97.376 96.922 98.226 1.4211E-14 125 44 4 0.970896762344053 0.00280112582288643 0.0349805142907631 0.0078283 1 22582 88.239 76.969 1 8595500 1991.2 3358.4 2540.1 2965.7 3144.6 2556.2 3150 2883.5 3233.5 15411 1886.2 3170.3 2533.6 3062.5 3155.6 2613.6 3208.4 3344.1 3186.9 14578 1 1 1 1 1 1 1 1 1 1 188 1422 167 175 212 212 4656 AETPTESVSEPEVATK 16 Phospho (STY) _AETPT(ph)ESVSEPEVATK_ AET(0.289)PT(0.408)ES(0.233)VS(0.07)EPEVATK AET(-1.5)PT(1.5)ES(-2.44)VS(-7.63)EPEVAT(-100.75)K 0 0 1 0 P18858 P18858 P18858 LIG1 DNA ligase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.707885742188 3 585.595912 1753.76591 36995.6723061553 1.6235 0.00095074 260890 152.77 260890 152.78 738.705858120464 55.888 0.41278 55.888 55.713 56.126 0 25 13 3 0.893008240108189 0.0014286028265461 0.0119899645299722 8.5446E-07 1 13058 142.72 120.5 5 15306000 16714 17011 15462 20105 19382 16223 16011 17709 21352 28088 15811 16088 15683 20392 19395 16506 16606 18552 20841 26858 1 1 1 1 1 1 1 1 1 1 189 434 168 176 213 213 4411 AETSEGSGSAPAVPEASASPK 21 Phospho (STY) _AETSEGSGSAPAVPEASAS(ph)PK_ AETSEGSGSAPAVPEAS(0.005)AS(0.995)PK AET(-98.74)S(-95.74)EGS(-84.56)GS(-71.17)APAVPEAS(-22.87)AS(22.87)PK 0 0 1 0 P51608 P51608 P51608 MECP2 Methyl-CpG-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.073364257813 3 670.628163 2008.86266 34998.7516083534 1.9179 0.0012862 227810 152.78 227810 152.78 823.403945094607 48.757 0.51694 48.757 48.564 49.081 0 58 17 5 0.926583225068773 0.00208342225747849 0.0182263974183146 3.7495E-05 1 11296 118.54 105.11 6 86768000 11640 12618 11812 13656 11628 10984 12138 13381 13409 9204.3 11015 11926 11883 13916 11819 11177 12366 13607 13177 8976.7 1 1 1 1 1 1 1 1 1 1 190 680 169 177 214 214 1138 AEVPGATGGDSPHLQPAEPPGEPR 24 Phospho (STY) _AEVPGATGGDS(ph)PHLQPAEPPGEPR_ AEVPGAT(0.001)GGDS(0.999)PHLQPAEPPGEPR AEVPGAT(-31.23)GGDS(31.23)PHLQPAEPPGEPR 0 0 1 0 Q9P2K5 Q9P2K5 Q9P2K5 MYEF2 Myelin expression factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 892.765441894531 3 816.039337 2445.09618 32160.025624525 1.1805 0.00096333 93610 76.389 93611 76.39 892.762767013415 55.46 0.69884 55.46 55.134 55.833 0 75 23 5 0.9815944030163 0.00274911936291688 0.0222094942577116 1.0312E-17 1 12923 224.84 203.81 2 42690000 5307.1 6826.6 5517.9 6655.4 18979 5794.3 21764 11830 6111.4 19449 5022.7 6447.9 5714.2 6830.2 18490 5958.7 21592 12218 6694 18587 1 1 1 1 1 1 1 1 1 1 191 2111 170 178 215 215 3810 AEVYGSENESER 12 Phospho (STY) _AEVYGS(ph)ENESER_ AEVYGS(1)ENESER AEVY(-128.84)GS(37.7)ENES(-37.7)ER 0 0 1 0 Q9BVS4 Q9BVS4 Q9BVS4 RIOK2 Serine/threonine-protein kinase RIO2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.862426757813 2 725.280118 1448.54568 34060.6833693155 1.1824 0.00085759 157980 114.58 157980 114.58 839.861538168979 36.819 0.64278 36.819 36.569 37.211 0 71 21 4 0.835000788851985 0.00296839792192726 0.0535322139384031 3.3199E-16 2 8285 235.95 220.13 3 79655000 33479 134310 31378 124740 32939 28700 38320 66477 145610 10382 31672 126830 31746 127120 33511 33548 41686 65530 139120 11314 2 2 2 2 2 2 2 2 2 2 192 1846 171 179 216;217 217 3375 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 Phospho (STY) _AFAAVPTSHPPEDAPAQPPTPGPAAS(ph)PEQLSFR_ AFAAVPTSHPPEDAPAQPPTPGPAAS(0.985)PEQLS(0.015)FR AFAAVPT(-112.84)S(-113.07)HPPEDAPAQPPT(-45.5)PGPAAS(18.28)PEQLS(-18.28)FR 0 0 1 0 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.950622558594 4 855.408048 3417.60309 32730.039850155 1.576 0.0013481 66975 57.291 66977 57.293 912.949602094179 78.796 0.70148 78.796 78.432 79.134 1.4211E-14 99 23 6 0.977149584068846 0.00337641104005791 0.036376170732549 4.1946E-08 1 18445 156.49 142.15 5 48381000 5491.8 4813.3 5380.7 5148.7 4181.1 6359.2 3588.7 4825 5024.7 16907 5196.3 4548.9 5408.7 5285.5 4306.8 6332.7 3720.7 5408.7 4896.9 16031 1 1 1 1 1 1 1 1 1 1 193 994 172 180 218 218 1686 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 Phospho (STY) _AFAAVPTSHPPEDAPAQPPTPGPAAS(ph)PEQLSFR_ AFAAVPTSHPPEDAPAQPPTPGPAAS(0.997)PEQLS(0.003)FR AFAAVPT(-83.8)S(-83.99)HPPEDAPAQPPT(-40.38)PGPAAS(25.56)PEQLS(-25.56)FR 0 0 1 0 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 730.563049316406 5 684.527893 3417.60309 37123.5946441569 1.6183 0.0011078 66955 45.833 66957 45.834 730.560836188666 78.792 0.52711 78.792 78.521 79.048 1.4211E-14 41 17 4 0.558153535353022 0.000804874814914469 0.0156198823163485 4.0894E-05 1 18460 117.42 104.32 5 10755000 5083.5 5231.7 3596.9 4082.2 4460.5 5182.1 4012.6 4166.2 5618 6030.1 4804.7 4935.6 3717.1 4279.3 4470.8 5143.8 4150 4400 5475.2 5774.5 1 1 1 1 1 1 1 1 1 1 194 994 172 180 219 219 1686 AFGPGLQGGSAGSPAR 16 Phospho (STY) _AFGPGLQGGSAGS(ph)PAR_ AFGPGLQGGSAGS(1)PAR AFGPGLQGGS(-48.79)AGS(48.79)PAR 0 0 1 0 P21333 P21333 P21333 FLNA Filamin-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.928771972656 2 755.345929 1508.67731 32993.0302317232 1.3627 0.0010293 151690 114.58 151700 114.58 869.927689405886 58.849 0.52603 58.849 58.549 59.075 0 59 17 5 0.990787694812121 0.00175989082069579 0.0311555816142433 4.0799E-11 1 13754 207.55 163.95 2 55979000 11712 20164 11404 17383 24782 10127 24188 19070 19883 13919 11081 19033 11664 17902 24347 10613 24531 19201 19801 13548 1 1 1 1 1 1 1 1 1 1 195 451 173 181 220 220 733 AFGSGIDIKPGTPPIAGR 18 Phospho (STY) _AFGSGIDIKPGT(ph)PPIAGR_ AFGSGIDIKPGT(1)PPIAGR AFGS(-52.71)GIDIKPGT(52.71)PPIAGR 0 0 1 1 Q9Y520 Q9Y520 Q9Y520 PRRC2C Protein PRRC2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.090881347656 3 611.980143 1832.9186 36734.6141350848 1.9746 0.0012084 249640 152.78 249640 152.78 765.089771416749 78.971 0.64338 78.971 78.607 79.251 0 67 21 4 0.985314096950472 0.00203287201729593 0.0285049774739878 9.8972E-05 1 18496 118.08 88.751 2 27680000 15428 17140 15946 17967 19156 16511 19618 16727 15979 21317 14600 16196 16067 18374 19253 16657 19847 17412 15921 20460 1 1 1 1 1 1 1 1 1 1 196 2289 174 182 221 221 4851 AFGSGYR 7 Phospho (STY) _AFGS(ph)GYR_ AFGS(0.986)GY(0.014)R AFGS(18.38)GY(-18.38)R 0 0 1 0 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.749816894531 2 419.168186 836.321818 42002.1909170653 1.1198 0.0004694 273360 114.58 273360 114.58 533.749588256792 48.954 1.0963 48.954 48.651 49.747 0 82 37 4 0.900902663571148 0.00473996133856469 0.0729841317523258 0.015765 1 11334 78.377 55.305 2 134340000 35476 71234 36067 65684 22003 30113 29299 45605 72119 2298.3 33572 67261 36125 67209 23303 31970 30646 45214 69343 3219.6 1 1 1 1 1 1 1 1 1 1 197 468 175 183 222 222 764 AFKESPK 7 Phospho (STY) _AFKES(ph)PK_ AFKES(1)PK AFKES(72.15)PK 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 525.303955078125 3 296.140521 885.399734 43314.493017467 0.82223 0.0002435 773830 229.16 773830 229.16 525.30347216717 47.981 0.79061 47.981 47.685 48.475 0 80 26 4 0.992006404162162 0.00729134375805976 0.160453907479535 0.011475 1 11099 72.152 46.493 1 136550000 59390 49044 57535 46981 14115 50982 14935 39340 49108 2193.9 56192 46318 57512 48428 16932 50782 16099 39978 47005 2976.3 1 1 1 1 1 1 1 1 1 1 198 603 176 184 223 223 978 AFLAELEQNSPK 12 Phospho (STY) _AFLAELEQNS(ph)PK_ AFLAELEQNS(1)PK AFLAELEQNS(173.79)PK 0 0 1 0 Q9UPN3 Q9UPN3 Q9UPN3 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.001525878906 3 476.225313 1425.65411 38788.6366207813 2.1445 0.0010213 320800 152.77 320810 152.78 629.000296096253 92.402 0.77355 92.402 92.113 92.886 0 81 26 4 0.984796099812116 0.00218773920678207 0.0542546891668651 2.4132E-08 1 21495 173.79 140.84 1 22704000 3217.7 7041.1 3400.4 7185.4 7567.2 4321.8 6856.1 6956.5 7484.2 7147.6 3045.4 6652.3 3463.2 7322.9 7423.8 4506.3 7030.3 7091.1 7358.1 6891.4 1 1 1 1 1 1 1 1 1 1 199 2211 177 185 224 224 4001 AFLASLSPAMVVPEDQLTR 19 Phospho (STY) _AFLASLS(ph)PAMVVPEDQLTR_ AFLAS(0.025)LS(0.975)PAMVVPEDQLTR AFLAS(-15.9)LS(15.9)PAMVVPEDQLT(-95.3)R 0 0 1 0 Q9H211 Q9H211 Q9H211 CDT1 DNA replication factor Cdt1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.740966796875 3 709.018157 2124.03264 35757.0003299265 1.128 0.00079975 107740 76.387 107740 76.388 785.740217277328 101.12 0.17514 101.12 101.01 101.19 0 15 5 4 0.908914506697111 0.0098423819199317 0.268259338764587 2.6739E-05 1 23727 124.4 107.73 3 50150000 6551.3 6794.8 6509 7102.7 9074.1 6433.5 8804.6 9773 6401.5 63386 6199.1 6420.6 6587.5 7263.3 9050.9 6639.8 8909.5 11584 6418.3 59912 1 1 1 1 1 1 1 1 1 1 200 1916 178 186 225 225 3480 AFLSPPTLLEGPLR 14 Phospho (STY) _AFLS(ph)PPTLLEGPLR_ AFLS(0.992)PPT(0.008)LLEGPLR AFLS(20.99)PPT(-20.99)LLEGPLR 0 0 1 0 O15320 O15320 O15320 CTAGE5 cTAGE family member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 910.497314453125 2 795.918199 1589.82185 32973.6157617607 1.4518 0.0011555 143960 114.58 143960 114.58 910.499094461852 101.87 0.31083 101.87 101.67 101.99 -1.4211E-14 22 10 3 0.788687194999099 0.00119574091927495 0.0581102341437561 0.00013062 1 23974 123.24 97.808 2 34842000 24983 14305 23785 14797 14251 24688 16614 22323 16339 253000 23636 13516 23907 15322 15058 24752 16791 30107 16134 238750 1 1 1 1 1 1 1 1 1 1 201 88 179 187 226 226 151 AFMESPK 7 Phospho (STY) _AFMES(ph)PK_ AFMES(1)PK AFMES(108.57)PK 0 0 1 0 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.343811035156 2 445.179904 888.345256 38258.442636215 2.4941 0.0011103 514760 229.16 514770 229.16 674.342901239432 63.642 0.71965 63.642 63.343 64.062 7.1054E-15 55 24 4 0.989950884131887 0.00150783012831322 0.0399336810235333 0.0019303 1 14935 108.57 71.094 1 14386000 22134 19526 19995 19582 8763.3 22185 10305 16711 21423 6589.8 20937 18446 20122 20144 9588.5 22065 10720 17173 20667 6591.8 1 1 1 1 1 1 1 1 1 1 202 603 180 188 227 227 979 AFMESPKQILDSAASLTGSK 20 Phospho (STY) _AFMES(ph)PKQILDSAASLTGSK_ AFMES(0.951)PKQILDS(0.048)AAS(0.001)LTGSK AFMES(12.99)PKQILDS(-12.99)AAS(-31.36)LT(-37.34)GS(-42.32)K 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 950.844604492188 3 721.013072 2160.01739 33232.4748922947 1.869 0.0013476 317830 229.16 317840 229.16 950.843917439513 100.58 0.25068 100.58 100.45 100.7 0 20 8 4 0.791904869416126 0.00266029007480995 0.0358991550634929 0.033993 1 23543 51.052 23.148 5 43027000 19137 20070 19002 18766 12562 22267 13608 20916 21958 62566 18108 18952 19065 19404 13151 22264 14030 22918 21312 59398 1 1 1 1 1 1 1 1 1 1 203 603 181 189 228 228 979 AFSFSLPRPGR 11 Phospho (STY) _AFS(ph)FSLPRPGR_ AFS(0.999)FS(0.001)LPRPGR AFS(31.41)FS(-31.41)LPRPGR 0 0 1 1 Q7LDG7 Q7LDG7 Q7LDG7 RASGRP2 RAS guanyl-releasing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 515.270446777344 3 438.883333 1313.62817 43830.2753640335 0.75872 0.00033299 174050 76.387 174050 76.388 515.270159965392 84.04 0.77339 84.04 83.555 84.329 0 66 26 3 0.986644434226671 0.00152717166417893 0.0276827935919451 0.0018218 1 19611 96.059 53.848 2 7209300 8347.1 1877.7 8157.1 1214.1 4128.9 8520.4 3578 4641.4 1371.8 1252.1 7897.8 1770 8174.3 1404.5 4418 8168.1 3608.2 4843.7 1447.1 1286.4 1 1 1 1 1 1 1 1 1 1 204 1323 182 190 229 229 2369 AFVEDSEDEDGAGEGGSSLLQK 22 Phospho (STY) _AFVEDS(ph)EDEDGAGEGGSSLLQK_ AFVEDS(1)EDEDGAGEGGSSLLQK AFVEDS(176.47)EDEDGAGEGGS(-176.47)S(-183.9)LLQK 0 0 1 0 Q8N9T8 Q8N9T8 Q8N9T8 KRI1 Protein KRI1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 927.102294921875 3 773.988197 2318.94276 32645.1340196559 2.1118 0.0016345 197390 152.78 197390 152.78 927.099656353594 82.423 0.53819 82.423 82.088 82.626 0 25 18 2 0.606563913902252 0.000538927467025605 0.00846988707914874 5.616E-17 1 19277 228.29 205.41 3 6108400 3956.8 3616 5386.4 3996.8 4109.8 4524.2 3919.9 4637.2 5035.2 24682 3749.5 3418.1 5325.6 4089 4244.3 4559.2 4029.8 5390.8 4921 23348 1 1 1 1 1 1 1 1 1 1 205 1490 183 191 230 230 2738 AFVEDSEDEDGAGEGGSSLLQK 22 Phospho (STY) _AFVEDS(ph)EDEDGAGEGGSSLLQK_ AFVEDS(1)EDEDGAGEGGSSLLQK AFVEDS(70.37)EDEDGAGEGGS(-70.37)S(-76.13)LLQK 0 0 1 0 Q8N9T8 Q8N9T8 Q8N9T8 KRI1 Protein KRI1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 927.099487304688 3 773.988197 2318.94276 32324.6659903642 1.8308 0.001417 197390 152.78 197390 152.78 927.102089217477 83.218 0.67034 83.218 82.885 83.555 1.4211E-14 59 22 4 0.976214088972806 0.00219106522909848 0.0165837944281966 5.7934E-05 1 19450 107.49 87.396 3 12025000 5443 4296.8 4287.6 4582.9 4937 6222.1 5187.1 4986.5 4755.8 24398 5146.1 4060.7 4392.2 4714.5 4974.9 6194 5256.2 5784.9 4710.8 23089 1 1 1 1 1 1 1 1 1 1 206 1490 183 191 231 231 2738 AGAESPTMSVDGR 13 Phospho (STY) _AGAES(ph)PTMSVDGR_ AGAES(1)PTMSVDGR AGAES(39.55)PT(-39.55)MS(-80.44)VDGR 0 0 1 0 O75362 O75362 O75362 ZNF217 Zinc finger protein 217 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.855712890625 2 679.276324 1356.53809 35282.6586237963 2.0432 0.0013879 168680 114.58 168680 114.58 793.854313205865 42.281 0.42821 42.281 42.054 42.482 0 37 14 3 0.614887720214825 0.00181655026088178 0.0801593252848542 1.6375E-22 1 9666 254.01 226.58 3 28027000 39806 35285 39421 31888 29216 42530 28623 39603 37124 101880 37665 33313 39591 33120 30250 42310 29397 42908 36270 96846 1 1 1 1 1 1 1 1 1 1 207 177 184 192 232 232 307 AGAPGALSPSYDGGLHGLQSK 21 Phospho (STY) _AGAPGALS(ph)PSYDGGLHGLQSK_ AGAPGALS(0.976)PS(0.024)YDGGLHGLQSK AGAPGALS(16.06)PS(-16.06)Y(-184.39)DGGLHGLQS(-189.19)K 0 0 1 0 P15923 P15923 P15923 TCF3 Transcription factor E2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 841.435852050781 3 688.324638 2061.95208 33200.728904652 1.8425 0.0012682 221950 152.78 221950 152.78 841.434116158095 69.067 0.55684 69.067 68.763 69.32 0 78 18 6 0.948982765885317 0.0039126433903437 0.0276601475504422 9.1336E-32 1 16180 301.93 265.03 4 126210000 13749 29761 13320 24248 26797 17358 47203 30961 31667 12756 13009 28083 13640 25123 26672 17901 46643 30913 31904 12728 1 1 1 1 1 1 1 1 1 1 208 398 185 193 233 233 632 AGAPGPGLGLCSSSPTGGFVDASVLVR 27 Phospho (STY) _AGAPGPGLGLCSSS(ph)PTGGFVDASVLVR_ AGAPGPGLGLCS(0.012)S(0.155)S(0.806)PT(0.027)GGFVDASVLVR AGAPGPGLGLCS(-18.1)S(-7.17)S(7.17)PT(-14.78)GGFVDAS(-40.4)VLVR 0 0 1 0 Q96L91 Q96L91 Q96L91 EP400 E1A-binding protein p400 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 947.144165039063 3 870.419161 2608.23565 31603.9618968775 1.5259 0.0013282 87761 76.389 87763 76.39 947.142214357138 99.788 0.17176 99.788 99.693 99.864 1.4211E-14 17 5 5 0.752787998491432 0.00181661965008015 0.0655976024917821 0.010463 1 23237 74.568 50.705 5 37810000 11242 16728 14234 15391 10201 16018 14660 17092 17894 50912 10649 15794 14120 15895 10656 16137 14797 18637 17519 48335 1 1 1 1 1 1 1 1 1 1 209 1710 186 194 234 234 3151 AGAPVGGSPGLAK 13 Phospho (STY) _AGAPVGGS(ph)PGLAK_ AGAPVGGS(1)PGLAK AGAPVGGS(85.49)PGLAK 0 0 1 0 Q6ZRS2 Q6ZRS2 Q6ZRS2 SRCAP Helicase SRCAP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.635131835938 3 387.860306 1160.55909 43343.2929651644 0.42679 0.00016553 393890 152.78 393890 152.78 540.635925164363 54.65 0.42311 54.65 54.473 54.896 -7.1054E-15 34 14 3 0.433360832058788 0.00125675966354859 0.0128994429811978 0.0056027 1 12769 85.493 61.559 1 16486000 15527 11363 17842 13018 9497.4 17760 10991 14028 13490 2019.3 14701 10743 17733 13341 10154 17547 11184 14276 13205 2226.1 1 1 1 1 1 1 1 1 1 1 210 1295 187 195 235 235 2311 AGAPVPEPPKEEQQQALEQFAAAAAHSTPVRR 32 Phospho (STY) _AGAPVPEPPKEEQQQALEQFAAAAAHS(ph)TPVRR_ AGAPVPEPPKEEQQQALEQFAAAAAHS(0.639)T(0.361)PVRR AGAPVPEPPKEEQQQALEQFAAAAAHS(2.48)T(-2.48)PVRR 0 0 1 2 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 981.01318359375 4 866.179497 3460.68888 32039.0359147823 1.6383 0.0014191 132280 114.58 132280 114.58 981.010889678596 79.645 0.50999 79.645 79.279 79.789 0 27 17 2 0.781077318263897 0.00113567185652894 0.0100934207707802 8.1888E-08 1 18683 150.06 124.38 2 12075000 7194.6 2191.5 7950.4 2284.6 3503.6 7466.5 2871.8 4503 2212 12909 6810.8 2070.7 7906.5 2423.3 3808.5 7239.9 2935.5 5020.7 2210.5 12260 1 1 1 1 1 1 1 1 1 1 211 2248 188 196 236 236 4150 AGDLLEDSPK 10 Phospho (STY) _AGDLLEDS(ph)PK_ AGDLLEDS(1)PK AGDLLEDS(90.41)PK 0 0 1 0 P51858 P51858 P51858 HDGF Hepatoma-derived growth factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 528.276184082031 3 375.500555 1123.47984 42512.1977964248 1.4039 0.00052718 406860 152.78 406860 152.78 528.275736860883 66.169 1.9267 66.169 65.778 67.705 0 171 65 4 0.821372185303496 0.00837948716145218 0.179073051717421 0.003603 2 15532 90.412 67.14 1 48633000 20866 19326 26190 21156 19835 25738 18531 19170 22606 3461.8 19764 18267 25985 21684 20489 25518 19037 19588 22132 3703.4 2 2 2 2 2 2 2 2 2 2 212 684 189 197 237;238 237 1150 AGDLLEDSPKRPK 13 Phospho (STY) _AGDLLEDS(ph)PKRPK_ AGDLLEDS(1)PKRPK AGDLLEDS(195.27)PKRPK 0 0 1 2 P51858 P51858 P51858 HDGF Hepatoma-derived growth factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.31298828125 4 377.189445 1504.72867 41909.8616808025 1.2624 0.00047618 455670 171.87 455670 171.87 549.312362034863 55.904 2.3986 55.904 55.536 57.935 -7.1054E-15 328 81 7 0.974722576906646 0.0229294142635765 0.488788804573171 7.0481E-11 1 13011 195.27 167.77 1 2095800000 73376 70649 77060 64818 72556 67079 77817 79270 74276 0 69446 66706 77338 66945 73967 67288 78861 79042 73438 0 1 1 1 1 1 1 1 1 1 0 213 684 190 198 239 239 1150 AGDRNSEDDGVVMTFSSVK 19 Phospho (STY) _AGDRNS(ph)EDDGVVMTFSSVK_ AGDRNS(1)EDDGVVMTFSSVK AGDRNS(83.21)EDDGVVMT(-83.21)FS(-123.16)S(-129.88)VK 0 0 1 1 Q9NY61 Q9NY61 Q9NY61 AATF Protein AATF MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.75 3 698.633031 2092.87726 32014.6735116432 1.7725 0.0012383 218680 152.78 218680 152.78 851.743489133544 76.671 1.0693 76.671 76.359 77.428 0 97 36 4 0.972810715722647 0.00514187305645909 0.0903133424192691 5.8076E-09 1 17966 174.98 153.85 4 32029000 17443 22714 17512 23213 14561 19398 18311 19755 21196 16448 16506 21460 17601 23743 15006 19650 18538 20298 20791 15945 1 1 1 1 1 1 1 1 1 1 214 2069 191 199 240 240 3738 AGDSAVLVLPPSPGPR 16 Phospho (STY) _AGDSAVLVLPPS(ph)PGPR_ AGDSAVLVLPPS(1)PGPR AGDS(-51.86)AVLVLPPS(51.86)PGPR 0 0 1 0 Q96JY6 Q96JY6 Q96JY6 PDLIM2 PDZ and LIM domain protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.663391113281 3 538.274667 1611.80217 40442.0185663503 1.5688 0.00084442 141910 76.388 141910 76.389 614.662563471303 74.852 3.1214 74.852 73.674 76.795 0 174 107 2 0.938509021334867 0.00373280064937307 0.0653636448802574 0.0036583 2 17667 91.64 65.521 2 18382000 8119.6 7255 8085.4 8326.9 7525.4 8664.3 8002.1 7700.4 7818.6 7233 7683.1 6859.6 8137.6 8489.8 7676.4 8671.2 8117.6 7979.3 7722.4 6989 2 2 2 2 2 2 2 2 2 2 215 1703 192 200 241;242 242 3139 AGDSAVLVLPPSPGPR 16 Phospho (STY) _AGDSAVLVLPPS(ph)PGPR_ AGDSAVLVLPPS(1)PGPR AGDS(-49.04)AVLVLPPS(49.04)PGPR 0 0 1 0 Q96JY6 Q96JY6 Q96JY6 PDLIM2 PDZ and LIM domain protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.49267578125 2 806.908363 1611.80217 32860.1353224378 2.0027 0.001616 142000 114.58 142000 114.58 921.489891506494 74.802 1.3862 74.802 74.388 75.774 0 128 47 4 0.623556753677428 0.000933010623635347 0.0757531692268363 0.0203 1 17717 68.265 56.801 2 11580000 24645 5905.7 25411 5933.7 8914 25399 7489.2 12889 5252.5 32091 23324 5579 25338 6403.6 9997.8 24494 7630.5 14380 5277.5 30516 1 1 1 1 1 1 1 1 1 1 216 1703 192 200 243 243 3139 AGDTSDQEGHSLEEK 15 Phospho (STY) _AGDTS(ph)DQEGHSLEEK_ AGDT(0.17)S(0.83)DQEGHSLEEK AGDT(-6.88)S(6.88)DQEGHS(-77.62)LEEK 0 0 1 0 Q99607 Q99607 Q99607 ELF4 ETS-related transcription factor Elf-4 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.33154296875 3 561.556228 1681.64685 NaN NaN NaN NaN NaN NaN NaN NaN 39.772 1 39.772 39.272 40.272 0 NaN NaN NaN 1.3099E-08 1 9034 157 122.05 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 217 1777 193 201 244 244 3277 AGEAPTENPAPPTQQSSAE 19 Phospho (STY) _AGEAPTENPAPPTQQSS(ph)AE_ AGEAPTENPAPPT(0.022)QQS(0.237)S(0.741)AE AGEAPT(-57.59)ENPAPPT(-15.26)QQS(-4.96)S(4.96)AE 0 0 1 0 P16989 P16989 P16989 YBX3 Y-box-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 730.9970703125 3 654.608991 1960.80514 37641.8493559433 1.8279 0.0011966 116690 76.388 116690 76.389 730.99601487465 41.496 0.54568 41.496 41.195 41.741 0 34 18 3 0.934676726718949 0.00114842381968338 0.0161324632848043 0.0125 1 9463 67.785 48.207 4 8023700 12758 14041 12456 14064 15141 13250 15878 15359 13614 14775 12071 13264 12594 14426 15215 13371 16065 15770 13529 14268 1 1 1 1 1 1 1 1 1 1 218 412 194 202 245 245 665 AGELTEDEVER 11 Unmodified _AGELTEDEVER_ 0 0 0 0 P62269 P62269 P62269 RPS18 40S ribosomal protein S18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.873901367188 2 624.291139 1246.56773 35722.8998599007 0.99314 0.00062001 183540 114.58 183540 114.58 738.872727962177 45.462 0.49563 45.462 45.236 45.731 0 39 16 3 0.975659523919161 0.00174334167928973 0.00797319114366034 3.0268E-14 1 10442 221.57 172.14 1 163150000 81603 61794 72916 59544 50314 76235 52593 65444 69992 7226.7 77185 58361 73649 61543 52442 75548 53902 66281 68323 8319.4 1 1 1 1 1 1 1 1 1 1 219 760 195 203 246 246 AGELTEDEVER 11 Phospho (STY) _AGELT(ph)EDEVER_ AGELT(1)EDEVER AGELT(124.48)EDEVER 0 0 1 0 P62269 P62269 P62269 RPS18 40S ribosomal protein S18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.856323242188 2 664.274304 1326.53406 36191.0331989795 1.3451 0.00089351 172490 114.58 172490 114.58 778.855211413037 47.011 0.32201 47.011 46.828 47.15 0 25 10 4 0.983768171515053 0.000391934753563673 0.0275287464028046 0.00014103 1 10873 124.48 91.626 1 7953700 15713 19907 15907 22424 26398 18346 25189 23348 22065 45506 14869 18820 16132 22805 26149 18719 25613 24597 21904 43390 1 1 1 1 1 1 1 1 1 1 220 760 195 204 247 247 4490 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 Phospho (STY) _AGEPNS(ph)PDAEEANSPDVTAGCDPAGVHPPR_ AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR AGEPNS(68.63)PDAEEANS(-68.63)PDVT(-120.71)AGCDPAGVHPPR 0 0 1 0 Q08J23 Q08J23 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1108.82202148438 3 1032.09966 3093.27714 29880.6135566793 1.313 0.0013552 74012 76.387 74013 76.389 1108.82148752049 51.086 1.2761 51.086 50.183 51.459 0 156 43 6 0.967842678344231 0.00115770900128345 0.0172788966392165 4.2168E-18 1 11796 236.05 218.15 3 44448000 3196 2482.6 2111.2 2039.3 2620 2639.2 3493.1 3829.1 2623.9 9709 3020.1 2342.7 2196.1 2130.6 2640.3 2651.8 3490 4087.3 2625.9 9230.8 1 1 1 1 1 1 1 1 1 1 221 891 196 205 248 248 1454 AGFAGDDAPR 10 Unmodified _AGFAGDDAPR_ 0 0 0 0 P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 P63261 ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.309997558594 2 488.727781 975.441008 40938.5176192477 1.1575 0.00056573 234450 114.58 234450 114.58 603.309061910176 39.816 1.0241 39.816 39.393 40.417 0 74 34 4 0.829382217003461 0.00482121583801796 0.194278785252573 4.8982E-06 1 9016 161.86 107.97 1 71657000 41059 22532 39065 24942 44735 36749 41848 36324 24581 3015.6 38845 21299 39515 25652 45005 36309 42263 36543 24987 3680.2 1 1 1 1 1 1 1 1 1 1 222 742;783;766 197 206 249 249 AGGASPAASSTAQPPTQHR 19 Phospho (STY) _AGGAS(ph)PAASSTAQPPTQHR_ AGGAS(1)PAASSTAQPPTQHR AGGAS(41.57)PAAS(-41.57)S(-73.61)T(-86.81)AQPPT(-152.19)QHR 0 0 1 0 Q8IU81 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.340576171875 3 624.618044 1870.8323 37780.4753075037 1.1913 0.00074409 122290 76.388 122300 76.388 701.339492924714 26.999 0.55914 26.999 26.623 27.182 0 62 18 5 0.98328268288183 0.00300954576866405 0.0215707335924585 6.6904E-11 2 5989 176.57 161.65 5 62426000 5867.2 7024.7 5513.5 7483.7 7233.4 5883.5 9134.5 7295.8 7635 3486.6 5550.6 6638.6 5596.8 7630.3 7264.4 5993 9165.8 7368.6 7597.1 3451.9 2 2 2 2 2 2 2 2 2 2 223 1407 198 207 250;251 251 2560 AGGEESQFEMDI 12 Unmodified _AGGEESQFEMDI_ 0 0 0 0 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.35498046875 2 656.771725 1311.5289 36108.456063158 2.0581 0.0013517 174460 114.58 174460 114.58 771.353019294773 82.528 0.6807 82.528 82.173 82.854 0 66 23 4 0.957133565630713 0.00310166262135418 0.132870181513449 0.00045419 1 19299 152.86 140.57 1 32805000 11453 8148 11884 8204.2 8435.3 11436 8228.7 9712.6 8127.3 22868 10839 7697.4 11899 8472.3 8760.8 11340 8383.2 10498 8023.5 21757 1 1 1 1 1 1 1 1 1 1 224 964 199 208 252 252 AGGGPTLQCPPPSSPEK 17 Phospho (STY) _AGGGPTLQCPPPSS(ph)PEK_ AGGGPTLQCPPPS(0.166)S(0.834)PEK AGGGPT(-103.91)LQCPPPS(-7.02)S(7.02)PEK 0 0 1 0 Q96N66 Q96N66 Q96N66 MBOAT7 Lysophospholipid acyltransferase 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.040222167969 3 587.26221 1758.7648 37062.0509640616 1.8295 0.0010744 260150 152.78 260150 152.78 740.371267015924 51.548 0.55206 51.548 51.195 51.747 0 43 18 3 0.989679307996728 0.00170629608733862 0.00765133456637202 3.9306E-07 1 11965 141.31 125.77 3 16208000 12225 15471 10318 15571 11481 10115 12406 11934 15672 8833.5 11561 14616 10515 15894 11598 10421 12673 12166 15325 8593.9 1 1 1 1 1 1 1 1 1 1 225 1719 200 209 253 253 3163 AGGKPSQSPSQEAAGEAVLGAK 22 Phospho (STY) _AGGKPSQS(ph)PSQEAAGEAVLGAK_ AGGKPS(0.074)QS(0.817)PS(0.11)QEAAGEAVLGAK AGGKPS(-10.45)QS(8.71)PS(-8.71)QEAAGEAVLGAK 0 0 1 1 P00519 P00519 P00519 ABL1 Tyrosine-protein kinase ABL1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 936.839721679688 3 707.338835 2118.99468 33670.6283762626 2.336 0.0016524 323980 229.16 323980 229.17 936.837145161501 61.036 0.47087 61.036 60.803 61.274 0 44 15 4 0.834395805515599 0.0020647635364801 0.0365632560085531 6.6559E-12 1 14321 190.8 161.06 3 13351000 4619.5 21614 5978.2 22584 6466.8 5676.2 5631.5 10936 24676 11686 4376.3 20424 5946 22858 6539.9 6532.2 6294 11118 23540 11257 1 1 1 1 1 1 1 1 1 1 226 281 201 210 254 254 464 AGGLDWPEATEVSPSR 16 Phospho (STY) _AGGLDWPEATEVS(ph)PSR_ AGGLDWPEATEVS(0.983)PS(0.017)R AGGLDWPEAT(-38.64)EVS(17.53)PS(-17.53)R 0 0 1 0 Q9Y446 Q9Y446 Q9Y446 PKP3 Plakophilin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 991.468688964844 2 876.385449 1750.75634 32240.3367169851 2.0219 0.0017719 130740 114.58 130750 114.58 990.966947159292 77.128 0.42727 77.128 76.912 77.339 0 24 14 2 0.878525385796618 0.000818106769887525 0.0157524259769321 0.00021427 1 18095 102.39 86.749 3 9885300 2825.4 10472 3312.2 10462 3445.9 2933.6 3057.9 6588.4 12419 36077 2675.4 9892.6 3308.1 10622 3492.3 3390.3 3387.6 7554.1 11857 34123 1 1 1 1 1 1 1 1 1 1 227 2273 202 211 255 255 4207 AGGPATPLSPTR 12 Phospho (STY) _AGGPATPLS(ph)PTR_ AGGPATPLS(0.981)PT(0.019)R AGGPAT(-53.39)PLS(17.16)PT(-17.16)R 0 0 1 0 Q03252 Q03252 Q03252 LMNB2 Lamin-B2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.373291015625 2 602.789727 1203.5649 37381.9834694271 1.4986 0.00090334 190090 114.58 190090 114.58 717.371625403543 45.338 0.57972 45.338 44.976 45.556 7.1054E-15 51 19 4 0.945731766589103 0.00186108207127756 0.070409806012572 2.9883E-06 1 10387 138.35 71.682 3 82213000 16438 23493 16551 21762 18220 17467 20035 18516 23015 16739 15555 22183 16683 22381 18420 17745 20389 19036 22582 16191 1 1 1 1 1 1 1 1 1 1 228 859 203 212 256 256 1388 AGGPTTPLSPTR 12 Phospho (STY) _AGGPT(ph)TPLSPTR_ AGGPT(0.5)T(0.5)PLSPTR AGGPT(0)T(0)PLS(-47.17)PT(-66.63)R 0 0 1 0 P20700 P20700 P20700 LMNB1 Lamin-B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.377380371094 2 617.79501 1233.57547 37241.8918200646 1.8962 0.0011715 185470 114.58 185470 114.58 732.376085890687 41.723 0.54107 41.723 41.424 41.965 0 45 18 3 0.917674170158087 0.00223395276556396 0.0574922598617975 6.6589E-07 1 9497 146.43 123.37 4 58249000 24434 27078 23924 25084 27664 23532 26877 27000 28887 11890 23119 25568 24164 25852 27844 23722 27451 27307 28417 11821 1 1 1 1 1 1 1 1 1 1 229 448 204 213 257 257 723;4420;4421 AGGPTTPLSPTR 12 Phospho (STY) _AGGPTTPLS(ph)PTR_ AGGPTTPLS(0.973)PT(0.027)R AGGPT(-57.55)T(-43.09)PLS(15.64)PT(-15.64)R 0 0 1 0 P20700 P20700 P20700 LMNB1 Lamin-B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.377563476563 2 617.79501 1233.57547 36296.1486701469 1.7014 0.0010511 185470 114.58 185470 114.58 732.376779621863 45.208 0.69832 45.208 44.767 45.466 -7.1054E-15 55 23 3 0.968311964620449 0.00389690150904296 0.0891917370664584 2.3528E-07 1 10349 162.96 129.23 4 234890000 33500 36894 32330 35976 34673 34305 35023 35554 38173 6325.7 31695 34847 32651 36968 35056 34488 35720 35805 37532 6779.3 1 1 1 1 1 1 1 1 1 1 230 448 204 213 258 258 723;4420;4421 AGGPTTPLSPTR 12 2 Phospho (STY) _AGGPTT(ph)PLS(ph)PTR_ AGGPT(0.022)T(0.978)PLS(0.916)PT(0.084)R AGGPT(-16.31)T(16.31)PLS(10.34)PT(-10.34)R 0 0 2 0 P20700 P20700 P20700 LMNB1 Lamin-B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.362182617188 2 657.778175 1313.5418 35350.2365284789 1.7221 0.0011328 174190 114.58 174200 114.58 772.35971686153 43.04 0.9838 43.04 42.538 43.522 0 85 33 3 0.946988276531829 0.000704772865388518 0.00853309164073962 0.00027919 1 9787 113.07 97.524 6 27908000 15394 15262 15378 15488 13458 16151 11983 14750 15568 13593 14567 14419 15459 15900 13753 16167 12367 15259 15209 13141 1 1 1 1 1 1 1 1 1 1 231 448 204 214 259 259 723;4420;4421 AGGPTTPLSPTR 12 2 Phospho (STY) _AGGPTT(ph)PLS(ph)PTR_ AGGPT(0.055)T(0.945)PLS(0.955)PT(0.045)R AGGPT(-12.67)T(12.67)PLS(13.7)PT(-13.7)R 0 0 2 0 P20700 P20700 P20700 LMNB1 Lamin-B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.361267089844 2 657.778175 1313.5418 36190.4286916659 1.7621 0.0011591 174200 114.58 174200 114.58 772.36104765334 43.668 1.4257 43.668 43.522 44.948 0 75 48 3 0.890607086961267 0.000577063170241925 0.0141220939699132 0.01333 1 10040 86.592 73.966 6 11517000 15203 15888 16393 14538 14011 16121 12550 13745 15033 13563 14390 15001 16406 15035 14341 16084 12913 14288 14728 13089 1 1 1 1 1 1 1 1 1 1 232 448 204 214 260 260 723;4420;4421 AGGSAALSPSK 11 Phospho (STY) _AGGSAALS(ph)PSK_ AGGSAALS(0.999)PS(0.001)K AGGS(-39.03)AALS(32.44)PS(-32.44)K 0 0 1 0 Q92522 Q92522 Q92522 H1FX Histone H1x MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.401489257813 2 513.236796 1024.45904 36185.1388767183 1.9569 0.0010043 446500 229.16 446510 229.16 742.399528287855 43.503 1.2024 43.503 42.969 44.172 0 113 40 4 0.963017178252768 0.00266117614681583 0.0516044467803235 4.8857E-07 1 9911 163.09 119.79 3 830760000 29634 54998 28729 54221 34190 27906 37043 40484 58320 5794.1 28038 51950 29053 55297 34434 29315 38152 40295 56642 6392.8 1 1 1 1 1 1 1 1 1 1 233 1594 205 215 261 261 2925 AGGSAALSPSKK 12 Phospho (STY) _AGGSAALS(ph)PSKK_ AGGS(0.001)AALS(0.978)PS(0.021)KK AGGS(-31.93)AALS(16.6)PS(-16.6)KK 0 0 1 1 Q92522 Q92522 Q92522 H1FX Histone H1x MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.355651855469 3 385.191944 1152.554 39751.9537343289 1.5511 0.00059746 594930 229.16 594930 229.16 614.354780446802 43.656 0.78494 43.656 43.326 44.111 0 80 25 5 0.894899035032069 0.0153589699477173 0.286546667570301 0.010516 1 10050 74.12 28.204 3 325390000 75401 114730 72457 122860 81368 77619 80530 100820 148700 2502.7 71337 108420 73237 124930 82099 80116 83880 100300 143830 4689.9 1 1 1 1 1 1 1 1 1 1 234 1594 206 216 262 262 2925 AGGSPAPGPETPAISPSKR 19 Phospho (STY) _AGGSPAPGPETPAIS(ph)PSKR_ AGGS(0.255)PAPGPET(0.166)PAIS(0.542)PS(0.037)KR AGGS(-3.27)PAPGPET(-5.15)PAIS(3.27)PS(-11.67)KR 0 0 1 1 P33316 P33316 P33316 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.411254882813 3 619.634924 1855.88294 37305.2298844608 1.5853 0.00098231 246560 152.78 246560 152.78 772.744157062591 48.005 0.37885 48.005 47.715 48.094 0 30 12 3 0.801033722076957 0.00090494062525961 0.00553791444621473 0.0049058 1 11126 90.1 66.962 4 12596000 18862 17852 18024 18802 24597 19182 25978 24393 21047 161730 17845 16869 18280 19254 24588 19580 26242 29139 20976 152850 1 1 1 1 1 1 1 1 1 1 235 532 207 217 263 263 864 AGGSVESLR 9 Phospho (STY) _AGGS(ph)VESLR_ AGGS(0.999)VES(0.001)LR AGGS(30.79)VES(-30.79)LR 0 0 1 0 O94885 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.798461914063 2 478.215864 954.417175 NaN NaN NaN NaN NaN NaN NaN NaN 41.423 1 41.423 40.923 41.923 0 NaN NaN NaN 0.020115 1 9447 82.914 39.765 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236 224 208 218 264 264 385 AGILFEDIFDVK 12 Acetyl (Protein N-term) _(ac)AGILFEDIFDVK_ 1 0 0 0 P52434 P52434 P52434 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.452697753906 2 704.871568 1407.72858 35318.0348889766 2.376 0.0016748 162550 114.58 162560 114.58 819.450842896637 104.9 0.18163 104.9 104.82 105 0 10 6 3 0.900875860617903 0.00102852562520183 0.00909811185993909 2.5689E-07 1 24688 98.249 79.469 1 3191800 2152.8 2782.8 2163.7 3041.2 2374.1 1916.7 2352.6 2468.9 2665.3 7696.1 2037.2 2630.3 2180.6 3088.8 2396.8 1992.8 2404.3 2687 2616.6 7303.9 1 1 1 1 1 1 1 1 1 1 237 690 209 219 265 265 AGLESGAEPGDGDSDTTK 18 Phospho (STY) _AGLESGAEPGDGDS(ph)DTTK_ AGLESGAEPGDGDS(0.886)DT(0.081)T(0.033)K AGLES(-65.29)GAEPGDGDS(10.42)DT(-10.42)T(-14.28)K 0 0 1 0 O60832 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.014831542969 3 596.238676 1785.6942 NaN NaN NaN NaN NaN NaN NaN NaN 48.977 1 48.977 48.477 49.477 0 NaN NaN NaN 7.8783E-05 1 11367 107.15 86.772 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 238 159 210 220 266 266 270 AGLGSPERPPK 11 Phospho (STY) _AGLGS(ph)PERPPK_ AGLGS(1)PERPPK AGLGS(59.23)PERPPK 0 0 1 1 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.64013671875 3 396.863939 1187.56999 42102.0651000836 1.4548 0.00057737 384960 152.78 384960 152.78 549.639486859468 44.453 1.4244 44.453 43.668 45.093 7.1054E-15 160 48 4 0.524250185292601 0.00197240143447515 0.0446050212159496 0.018223 1 10125 59.225 13.224 1 135230000 21576 24941 21717 24545 24748 20857 19375 22968 22915 3410 20417 23559 21887 25167 24863 21103 20077 23060 22460 3742.5 1 1 1 1 1 1 1 1 1 1 239 1944 211 221 267 267 3526 AGLQFPVGR 9 Unmodified _AGLQFPVGR_ 0 0 0 0 Q99878;Q96KK5;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;Q9BTM1;Q16777;Q96QV6;Q8IUE6;P16104;Q71UI9;P0C0S5 Q99878;P16104;Q71UI9 P16104 HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;H2AFJ;HIST2H2AC;HIST1H2AA;HIST2H2AB;H2AFX;H2AFV;H2AFZ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-A;Histone H2A type 2-B;Histone H2AX;Histone H2A.V;Histone H2A.Z MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 587.350708007813 2 472.769252 943.52395 40782.7217717552 1.6205 0.00076611 242360 114.58 242360 114.58 587.34958779748 67.606 0.61743 67.606 67.299 67.916 0 54 20 4 0.528770765027942 0.00330885269582668 0.175557205237839 0.010438 1 15888 96.19 59.349 1 24536000 20033 21113 21553 21797 22270 19650 24078 21939 22264 5347.3 18962 19949 21627 22304 22581 19831 24373 22078 22045 5542.9 1 1 1 1 1 1 1 1 1 1 240 402;296;347 212 222 268 268 AGLSPANCQSDR 12 Phospho (STY) _AGLS(ph)PANCQSDR_ AGLS(1)PANCQSDR AGLS(67.21)PANCQS(-67.21)DR 0 0 1 0 Q14692 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.856262207031 2 678.274116 1354.53368 34576.2636517153 1.7522 0.0011885 168930 114.58 168930 114.58 792.854917541628 36.538 0.51672 36.538 36.233 36.749 0 43 17 3 0.979734161977713 0.00138692736975554 0.047127390628386 8.1915E-16 1 8208 214.32 176.99 2 43718000 20487 21182 20526 20549 11957 20153 10730 18095 23427 6661.8 19386 20006 20559 21132 12635 20205 11328 18431 22577 6691.7 1 1 1 1 1 1 1 1 1 1 241 1023 213 223 269 269 1747 AGMSSNQSISSPVLDAVPR 19 Oxidation (M),Phospho (STY) _AGM(ox)SSNQSIS(ph)SPVLDAVPR_ AGM(1)SSNQSISSPVLDAVPR AGMSSNQS(0.001)IS(0.582)S(0.417)PVLDAVPR AGM(139.9)SSNQSISSPVLDAVPR AGMS(-54.27)S(-45.89)NQS(-30.19)IS(1.44)S(-1.44)PVLDAVPR 0 1 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1121.55053710938 2 1006.46136 2010.90817 29777.1505227535 1.1081 0.0011152 113850 114.58 113850 114.58 1121.04428268281 71.936 0.64553 71.936 71.636 72.281 0 60 21 4 0.968261730753038 0.000476930672739839 0.0184922257983312 2.911E-07 1 16845 139.9 114.26 5 28536000 5008.8 4544.8 4480 5066.9 4016.1 5806.1 3485.6 5984 4910.5 26100 4737.6 4296.2 4534.8 5182.5 4096.7 5838.1 3612.5 6781.9 4784.7 24715 1 1 1 1 1 1 1 1 1 1 242 2226 214 224 270 270 236 4031;4032 AGMSSNQSISSPVLDAVPR 19 Phospho (STY) _AGMSSNQSISS(ph)PVLDAVPR_ AGMSSNQSIS(0.194)S(0.806)PVLDAVPR AGMS(-80)S(-73.31)NQS(-34.45)IS(-6.19)S(6.19)PVLDAVPR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.367919921875 3 665.978362 1994.91326 35627.2255415521 1.9475 0.001297 114700 76.388 114700 76.389 742.700513129785 77.712 0.98009 77.712 77.254 78.234 0 154 33 6 0.996688549866104 0.0055613229198676 0.113805783043122 1.5647E-07 1 18161 147.87 122.82 5 164090000 5700.4 5795 7107.2 6406.8 5011.1 6680.4 6137.8 5947.6 7343.5 9268.2 5399.3 5477.8 7052.2 6545.4 5226.1 6692.2 6226.7 6273.5 7194.7 8864.8 1 1 1 1 1 1 1 1 1 1 243 2226 214 225 271 271 4031;4032 AGMSSNQSISSPVLDAVPRTPSR 23 Oxidation (M),Phospho (STY) _AGM(ox)SSNQSISSPVLDAVPRT(ph)PSR_ AGM(1)SSNQSISSPVLDAVPRTPSR AGMSSNQSISSPVLDAVPRT(0.963)PS(0.037)R AGM(148.31)SSNQSISSPVLDAVPRTPSR AGMS(-137.19)S(-128.24)NQS(-105.34)IS(-76.34)S(-53.59)PVLDAVPRT(14.18)PS(-14.18)R 0 1 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.77734375 3 818.38786 2452.14175 32972.4973135608 1.5025 0.0012296 93338 76.386 93339 76.388 895.1087491244 62.041 0.46188 62.041 61.803 62.265 7.1054E-15 39 15 3 0.924999836255165 0.00174694970061251 0.0334087830671558 5.7554E-08 1 14565 148.31 134.05 7 18555000 8982.1 9739.4 11103 9231.9 6558.6 10159 6394.6 8435.6 8807.2 12714 8507.3 9197.5 11002 9524.9 6923.9 10144 6583.1 8911.4 8587.8 12167 1 1 1 1 1 1 1 1 1 1 244 2226 215 226 272 272 236 4031;4032;4817 AGMSSNQSISSPVLDAVPRTPSR 23 Oxidation (M),2 Phospho (STY) _AGM(ox)SSNQSISS(ph)PVLDAVPRT(ph)PSR_ AGM(1)SSNQSISSPVLDAVPRTPSR AGMSSNQSIS(0.083)S(0.917)PVLDAVPRT(0.647)PS(0.353)R AGM(131.23)SSNQSISSPVLDAVPRTPSR AGMS(-46.75)S(-40.07)NQS(-37.32)IS(-10.25)S(10.25)PVLDAVPRT(2.58)PS(-2.58)R 0 1 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.766418457031 3 845.043304 2532.10808 32416.8895339479 1.387 0.0011721 90394 76.387 90396 76.388 921.765297413698 64.439 0.81698 64.439 64.062 64.879 0 108 27 6 0.981365599741437 0.00293888717555681 0.0135000558575322 1.316E-05 1 15089 131.23 104.39 21 56814000 7609.4 7616.2 8582 8260.3 6114.8 8649.3 6613 8352.3 8347.2 11578 7204.1 7198.4 8556.4 8448.4 6359.7 8670.4 6755 8738.3 8162.7 11095 1 1 1 1 1 1 1 1 1 1 245 2226 215 227 273 273 236 4031;4032;4817 AGMSSNQSISSPVLDAVPRTPSR 23 Phospho (STY) _AGMSSNQSISSPVLDAVPRT(ph)PSR_ AGMSSNQSISS(0.001)PVLDAVPRT(0.879)PS(0.119)R AGMS(-88.49)S(-81.83)NQS(-64.88)IS(-38.85)S(-28.85)PVLDAVPRT(8.67)PS(-8.67)R 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.113830566406 3 813.056222 2436.14684 32531.6668547332 1.7125 0.0013924 93953 76.389 93955 76.391 889.779635636746 67.57 1.5823 67.57 67.149 68.732 0 107 53 5 0.818186449639438 0.00652665820608818 0.169433655318079 0.0001054 1 15842 118.15 105.3 7 51327000 24805 28448 27787 30359 31010 26754 31295 31695 35410 20718 23483 26884 27849 30997 31287 27078 31954 32225 34765 20242 1 1 1 1 1 1 1 1 1 1 246 2226 215 228 274 274 4031;4032;4817 AGMSSNQSISSPVLDAVPRTPSR 23 2 Phospho (STY) _AGMSSNQSISS(ph)PVLDAVPRT(ph)PSR_ AGMSSNQSIS(0.002)S(0.998)PVLDAVPRT(0.996)PS(0.004)R AGMS(-82.79)S(-75.56)NQS(-53.64)IS(-26.95)S(26.95)PVLDAVPRT(23.57)PS(-23.57)R 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 916.099792480469 3 839.711666 2516.11317 32355.9575815914 1.5479 0.0012998 90969 76.387 90970 76.389 916.433484937648 70.082 0.92654 70.082 69.728 70.655 0 127 31 6 0.901210139619275 0.00327424265790968 0.0265744517919913 1.0134E-17 1 16401 241.4 222.63 21 123230000 10000 10768 12462 10032 7768.2 13679 7191.1 9286.5 11287 26001 9471.9 10168 12349 10404 8156.1 13542 7459.8 10269 10964 24698 1 1 1 1 1 1 1 1 1 1 247 2226 215 229 275 275 4031;4032;4817 AGMTSSPDATTGQTFG 16 Phospho (STY) _AGMTSS(ph)PDATTGQTFG_ AGMT(0.019)S(0.1)S(0.881)PDAT(0.001)TGQTFG AGMT(-16.73)S(-9.47)S(9.47)PDAT(-30.98)T(-53.2)GQT(-85.91)FG 0 0 1 0 Q9UQR1 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 919.393615722656 2 804.81601 1607.61747 31549.4715260437 1.4343 0.0011543 142370 114.58 142370 114.58 919.894841344619 61.607 0.4727 61.607 61.36 61.833 0 55 15 4 0.342185599484871 0.000917048432568991 0.0303093954986061 8.5862E-07 1 14438 144.51 130.06 6 31571000 13028 17542 16540 13983 14039 19691 17718 18321 13964 11371 12341 16551 16429 14667 14443 19487 17756 18773 13938 11131 1 1 1 1 1 1 1 1 1 1 248 2234 216 230 276 276 4129 AGNALTPELAPVQIK 15 Phospho (STY) _AGNALT(ph)PELAPVQIK_ AGNALT(1)PELAPVQIK AGNALT(93.5)PELAPVQIK 0 0 1 0 P0C1Z6 P0C1Z6 P0C1Z6 TFPT TCF3 fusion partner MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.391906738281 3 534.614801 1600.82257 36744.0671901073 1.8361 0.00098161 285770 152.78 285770 152.78 687.39130264643 84.516 0.4508 84.516 84.271 84.721 -1.4211E-14 35 15 3 0.864027244259264 0.0026542291788462 0.0506298841001585 0.0047287 1 19746 93.5 72.837 1 8440700 4837.1 6877.4 4950.3 6953 6057.8 3556.1 6227 6269 6672.2 9003 4577.6 6497.2 4992.1 7079.9 6084.9 3767.1 6342.6 6454.4 6564.6 8622.5 1 1 1 1 1 1 1 1 1 1 249 348 217 231 277 277 4383 AGPCSLSQGNLSPNWPR 17 Phospho (STY) _AGPCSLS(ph)QGNLSPNWPR_ AGPCS(0.001)LS(0.874)QGNLS(0.125)PNWPR AGPCS(-28.49)LS(8.46)QGNLS(-8.46)PNWPR 0 0 1 0 O43182 O43182 O43182 ARHGAP6 Rho GTPase-activating protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.676879882813 3 640.952258 1919.83495 37311.4779115915 1.6908 0.0010837 119180 76.388 119180 76.389 717.674070937786 73.575 0.65368 73.575 73.213 73.866 0 75 22 5 0.713089678824045 0.00273975826526251 0.0225832483616469 3.7346E-07 1 17247 143.04 119.75 3 24292000 5744 10131 6035.3 11198 7120.1 6073.8 6831.6 7468.6 10320 9797.5 5436.4 9576.6 6073.2 11351 7160.7 6352.8 7063.4 7732.7 10035 9398.4 1 1 1 1 1 1 1 1 1 1 250 100 218 232 278 278 167 AGPGSSPLFSLLPGYR 16 Phospho (STY) _AGPGS(ph)SPLFSLLPGYR_ AGPGS(0.5)S(0.5)PLFSLLPGYR AGPGS(0)S(0)PLFS(-69.49)LLPGY(-91.69)R 0 0 1 0 Q9H0W8 Q9H0W8 Q9H0W8 SMG9 Protein SMG9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.335266113281 3 566.946551 1697.81782 38958.6352782766 1.1047 0.00062632 134740 76.388 134740 76.388 643.33444373055 101.23 0.14231 101.23 101.16 101.3 0 12 4 4 0.96631563459138 0.00235416645636883 0.0495341215596941 0.00044897 1 23774 100.48 86.394 4 29531000 3016.4 3830.9 3320.9 3877 4055.6 2149.2 3342 5084.2 4404.3 15197 2855.5 3619.1 3334.1 3950.2 4063.1 2296.8 3465.3 5444 4300.7 14427 1 1 1 1 1 1 1 1 1 1 251 1909 219 233 279 279 3463;3464 AGPVSPGCVK 10 Phospho (STY) _AGPVS(ph)PGCVK_ AGPVS(1)PGCVK AGPVS(97.44)PGCVK 0 0 1 0 Q53GL7 Q53GL7 Q53GL7 PARP10 Poly [ADP-ribose] polymerase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.399780273438 2 526.235742 1050.45693 36987.055410239 0.96729 0.00050902 435480 229.16 435480 229.16 755.399268422284 52.009 0.46265 52.009 51.776 52.238 -7.1054E-15 32 15 3 0.9771300961465 0.000783788766460682 0.0137419945973674 0.0024424 1 12088 97.439 74.859 1 13657000 31806 9844.2 30939 10496 15890 32340 15973 18244 10490 14996 30094 9303.2 31020 11088 17010 31292 16105 19298 10583 14543 1 1 1 1 1 1 1 1 1 1 252 1149 220 234 280 280 1998 AGQTQPNPGILPIQPALTPR 20 Phospho (STY) _AGQTQPNPGILPIQPALT(ph)PR_ AGQTQPNPGILPIQPALT(1)PR AGQT(-76.79)QPNPGILPIQPALT(76.79)PR 0 0 1 0 Q2M2I8 Q2M2I8 Q2M2I8 AAK1 AP2-associated protein kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.76806640625 3 717.043694 2148.10925 36440.0564247691 1.6612 0.0011912 106530 76.389 106540 76.39 793.767168664863 84.766 0.51472 84.766 84.496 85.01 1.4211E-14 59 17 4 0.830417311485415 0.00456719202514545 0.0794675174178331 0.00076464 1 19795 100.24 72.594 2 11410000 6651.9 4654.3 7299.3 4351.6 4499.5 7321.2 4832.8 6627.5 5063 18460 6296.8 4395 7279.1 4534.3 4736.4 7231.9 4909.6 7231 4985.9 17536 1 1 1 1 1 1 1 1 1 1 253 1122 221 235 281 281 4588 AGSEECVFYTDETASPLAPDLAK 23 Phospho (STY) _AGS(ph)EECVFYTDETASPLAPDLAK_ AGS(1)EECVFYTDETASPLAPDLAK AGS(59.87)EECVFY(-113.8)T(-59.87)DET(-134.9)AS(-170.43)PLAPDLAK 0 0 1 0 Q765P7 Q765P7 Q765P7 MTSS1L MTSS1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1004.14801025391 3 851.036382 2550.08732 30840.1505447689 1.4662 0.0012478 179520 152.77 179520 152.78 1004.14535254265 94.677 0.65096 94.677 94.402 95.053 -1.4211E-14 85 22 5 0.869500745871942 0.0101992290482345 0.132466408843588 6.155E-18 1 22040 235.7 212.48 5 30418000 9679.9 7322.7 11959 7510 6022.3 10754 5986.1 12607 6612.9 130890 9168.2 6918.6 11838 7751.7 6462.1 10905 6112.3 16518 6498.3 123540 1 1 1 1 1 1 1 1 1 1 254 1311 222 236 282 282 2339 AGSISTLDSLDFAR 14 Phospho (STY) _AGSIS(ph)TLDSLDFAR_ AGS(0.068)IS(0.931)T(0.001)LDSLDFAR AGS(-11.38)IS(11.38)T(-29.97)LDS(-69.81)LDFAR 0 0 1 0 Q9P260 Q9P260 Q9P260 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.435546875 2 766.853253 1531.69195 32237.3749609331 1.9878 0.0015243 149420 114.58 149420 114.58 881.435577781456 90.593 0.53922 90.593 90.307 90.847 -1.4211E-14 42 18 3 0.990653031897168 0.00183869378644177 0.0906402935419939 6.9471E-23 1 21093 274.64 242.21 4 22523000 13190 18011 12622 16981 6416.2 11300 6738.5 12798 19741 18852 12479 17009 12667 17407 6894.4 11635 7199.8 13348 18927 18048 1 1 1 1 1 1 1 1 1 1 255 2102 223 237 283 283 3798 AGSNEDPILAPSGTPPPTIPPDETFGGR 28 Phospho (STY) _AGSNEDPILAPSGT(ph)PPPTIPPDETFGGR_ AGSNEDPILAPS(0.002)GT(0.998)PPPTIPPDETFGGR AGS(-105.48)NEDPILAPS(-26.11)GT(26.11)PPPT(-50.86)IPPDET(-90.89)FGGR 0 0 1 0 Q8IZL8 Q8IZL8 Q8IZL8 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1034.17016601563 3 957.446321 2869.31713 30488.2811422404 1.4788 0.0014159 79783 76.388 79785 76.389 1034.16856115082 82.401 3.4147 82.401 81.307 84.721 1.4211E-14 537 118 6 0.994492979836111 0.00826397890345273 0.0911713983982599 1.1112E-07 4 19279 164.39 155.31 5 73121000 16470 20550 17012 16401 18422 19526 16365 21133 19431 78520 15587 19389 17112 17144 18586 19601 16841 23501 19043 74425 4 4 4 4 4 4 4 4 4 4 256 1444 224 238 284;285;286;287 285 4668 AGSPDVLR 8 Phospho (STY) _AGS(ph)PDVLR_ AGS(1)PDVLR AGS(135.72)PDVLR 0 0 1 0 Q8NDX6 Q8NDX6 Q8NDX6 ZNF740 Zinc finger protein 740 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 562.289794921875 2 447.707675 893.400797 41600.9670147462 2.1128 0.0009459 255930 114.58 255930 114.58 562.288663319406 46.06 0.87612 46.06 45.643 46.519 0 104 29 5 0.949955391303119 0.0116839990303815 0.434226673473849 0.00015656 1 10609 135.72 65.662 1 133500000 76800 58530 76776 57155 62399 73368 57767 69633 66814 3392.8 72672 55284 77125 59030 64115 72776 59272 70094 65542 4806.3 1 1 1 1 1 1 1 1 1 1 257 1513 225 239 288 288 2777 AGSPELVVLDPPWDK 15 Acetyl (Protein N-term),Phospho (STY) _(ac)AGS(ph)PELVVLDPPWDK_ AGS(1)PELVVLDPPWDK AGS(113.63)PELVVLDPPWDK 1 0 1 0 Q96IY1 Q96IY1 Q96IY1 NSL1 Kinetochore-associated protein NSL1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 987.490783691406 2 872.913311 1743.81207 31554.9975533692 1.3871 0.0012108 131260 114.58 131270 114.58 987.997165065763 102.7 0.34474 102.7 102.54 102.89 0 28 11 4 0.994036077336548 0.00121034385366266 0.0416652945240245 5.6717E-08 1 24191 113.63 57.404 1 39077000 8918.2 11771 10941 10822 3260.2 9580.6 3747.7 7644.6 10872 53615 8446.5 11115 10807 11150 3775.6 9735.3 3986.5 9358.6 10425 50662 1 1 1 1 1 1 1 1 1 1 258 1692 226 240 289 289 3109 AGSPFSPPPSSSSLTGEAAISR 22 Phospho (STY) _AGS(ph)PFSPPPSSSSLTGEAAISR_ AGS(1)PFSPPPSSSSLTGEAAISR AGS(43.45)PFS(-43.45)PPPS(-78.76)S(-85.94)S(-92.89)S(-98.46)LT(-108.75)GEAAIS(-128.84)R 0 0 1 0 Q96JY6 Q96JY6 Q96JY6 PDLIM2 PDZ and LIM domain protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.064453125 3 728.338724 2181.99434 35769.4759273848 1.5029 0.0010946 104880 76.388 104880 76.389 805.060874061367 70.525 0.98925 70.525 70.185 71.174 0 99 33 5 0.979829455233809 0.00172371278764342 0.0039463696439719 2.1318E-08 1 16515 165.96 147.19 8 44760000 7808.5 5912.9 7592.7 5671.9 7000.1 8584.1 5776.8 6546.3 5876.7 20860 7388 5584.4 7648.3 5885.2 7121.5 8488 5941.8 7274 5794.3 19794 1 1 1 1 1 1 1 1 1 1 259 1703 227 241 290 290 3140 AGSPLCNSNLQDSEEDIEPSYSLFR 25 Phospho (STY) _AGS(ph)PLCNSNLQDSEEDIEPSYSLFR_ AGS(0.992)PLCNS(0.008)NLQDSEEDIEPSYSLFR AGS(20.68)PLCNS(-20.68)NLQDS(-72.27)EEDIEPS(-101.71)Y(-101.63)S(-104.06)LFR 0 0 1 0 Q9NRY4 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1047.14233398438 3 970.082942 2907.227 30559.2364678588 1.3562 0.0013156 78745 76.389 78747 76.391 1047.14135488167 93.676 0.51706 93.676 93.389 93.906 -1.4211E-14 39 17 3 0.458480623508524 0.00183862205439814 0.0716682170951377 8.087E-05 1 21806 106.69 90.592 6 15915000 4287.4 5987.4 5511.7 7894 4782.6 4966.6 4972 6413.3 7135.7 38813 4061.5 5666.9 5471 7941.9 4901.2 5200.1 5111.2 7546.4 6949.1 36695 1 1 1 1 1 1 1 1 1 1 260 2019 228 242 291 291 3668 AGSPSPQPSGELPR 14 Phospho (STY) _AGS(ph)PSPQPSGELPR_ AGS(0.956)PS(0.044)PQPSGELPR AGS(13.42)PS(-13.42)PQPS(-67.16)GELPR 0 0 1 0 Q92619 Q92619 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.915710449219 2 730.332488 1458.65042 33781.0003399374 1.7539 0.0012809 156890 114.58 156890 114.58 844.914190126653 44.196 0.78081 44.196 43.815 44.596 -7.1054E-15 87 26 4 0.934500364719955 0.00261194279629565 0.0900831372756544 7.4322E-11 1 10100 205.24 129.65 3 112970000 45269 11667 47845 11172 27011 48108 28803 28168 12623 10777 42845 11019 47777 12095 28651 46343 28790 29352 13142 10800 1 1 1 1 1 1 1 1 1 1 261 1612 229 243 292 292 2969 AGSRLSAEER 10 Phospho (STY) _AGSRLS(ph)AEER_ AGS(0.001)RLS(0.999)AEER AGS(-30.42)RLS(30.42)AEER 0 0 1 1 Q86Y82 Q86Y82 Q86Y82 STX12 Syntaxin-12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.843994140625 2 578.261334 1154.50812 37154.8224506982 2.125 0.0012288 198150 114.58 198150 114.58 692.842812743048 28.447 0.71654 28.447 28.063 28.779 0 79 24 5 0.997272759893371 0.00371631777756664 0.109649459432545 0.00021862 1 6310 118.76 89.96 2 82793000 10779 17265 11010 18589 12198 10522 10911 14658 18477 5018.4 10201 16317 11086 18876 12297 10968 11376 14694 17910 5064.7 1 1 1 1 1 1 1 1 1 1 262 1399 230 244 293 293 2540 AGSYPEGAPAVLADKR 16 Acetyl (Protein N-term),Phospho (STY) _(ac)AGS(ph)YPEGAPAVLADKR_ AGS(0.874)Y(0.126)PEGAPAVLADKR AGS(8.4)Y(-8.4)PEGAPAVLADKR 1 0 1 1 Q96IZ6 Q96IZ6 Q96IZ6 METTL2A Methyltransferase-like protein 2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.995910644531 3 575.273215 1722.79782 40293.0093883552 1.4968 0.00086106 132790 76.388 132790 76.389 651.995688661197 69.882 0.49416 69.882 69.607 70.102 0 38 16 3 0.868511490587202 0.00110140485230952 0.00793998756202515 0.016201 1 16410 51.695 38.9 2 7547800 5878.6 5003.7 6676.6 6431.3 8532.6 5798.1 7058.1 6630.1 4806.5 7760.6 5565.7 4734.9 6697.1 6506.1 8526.4 5865.1 7193.7 6852.1 4838 7461 1 1 1 1 1 1 1 1 1 1 263 1693 231 245 294 294 3110 AGTDSPVSCASVTEER 16 Phospho (STY) _AGTDS(ph)PVSCASVTEER_ AGTDS(1)PVSCASVTEER AGT(-38.29)DS(37.05)PVS(-37.05)CAS(-66.15)VT(-71.03)EER 0 0 1 0 Q69YH5 Q69YH5 Q69YH5 CDCA2 Cell division cycle-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 987.938110351563 2 873.356031 1744.69751 31528.1765013917 1.625 0.0014192 131200 114.58 131200 114.58 987.937081888258 43.869 0.26527 43.869 43.757 44.022 7.1054E-15 19 8 3 0.964382081087262 0.000503039046079901 0.0167618742393456 2.1561E-16 1 10081 245.71 205.48 5 7935900 6353.9 8674.9 8473.2 8668.9 8087.1 8432.5 8962.6 7990.4 9811.5 4515 6020.4 8194.8 8407.1 8897.5 8242.8 8465.8 9104.3 8168.2 9645 4436.4 1 1 1 1 1 1 1 1 1 1 264 1231 232 246 295 295 2173 AGTFIAPPVYSNITPYQSHLRSPVR 25 Phospho (STY) _AGTFIAPPVYSNITPYQS(ph)HLRSPVR_ AGTFIAPPVYSNIT(0.007)PYQS(0.522)HLRS(0.471)PVR AGT(-124.98)FIAPPVY(-63.71)S(-36.56)NIT(-18.43)PY(-83.06)QS(0.45)HLRS(-0.45)PVR 0 0 1 1 Q6PJG2 Q6PJG2 Q6PJG2 ELMSAN1 ELM2 and SANT domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.155395507813 4 713.61273 2850.42181 35761.9612164454 2.1207 0.0015134 80282 57.291 80284 57.292 771.153965473135 81.528 0.71962 81.528 81.25 81.97 0 83 24 5 0.98139616876566 0.00408470045272553 0.0245899890061945 6.7525E-12 1 19089 185.72 160.11 7 29040000 3962.5 6458.3 4886.9 5126.2 6808.7 5192.7 7469.2 6040.3 5406.5 16725 3753 6093.3 4892.5 5345.8 6803.4 5244 7514.8 6529.9 5422 15888 1 1 1 1 1 1 1 1 1 1 265 1269 233 247 296 296 2247 AGTGYASPDRTHVLAAGK 18 Phospho (STY) _AGTGYAS(ph)PDRTHVLAAGK_ AGT(0.003)GYAS(0.976)PDRT(0.021)HVLAAGK AGT(-24.84)GY(-41.76)AS(16.63)PDRT(-16.63)HVLAAGK 0 0 1 1 O43379 O43379 O43379 WDR62 WD repeat-containing protein 62 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.740844726563 3 617.963152 1850.86763 36309.4572020304 1.729 0.0010684 247230 152.78 247230 152.78 770.740435822562 48.782 0.34559 48.782 48.651 48.997 0 20 11 2 0.609589513906759 0.000728293612496807 0.00664817453555089 3.0281E-05 1 11339 122.34 89.957 4 24081000 13800 25570 16079 23722 17942 16829 18821 19826 25458 10492 13067 24145 16085 24359 18117 17233 19298 20087 24837 10339 1 1 1 1 1 1 1 1 1 1 266 108 234 248 297 297 180 AGTPVSELTK 10 Phospho (STY) _AGT(ph)PVSELTK_ AGT(0.993)PVS(0.007)ELTK AGT(21.74)PVS(-21.74)ELT(-51.01)K 0 0 1 0 O75113 O75113 O75113 N4BP1 NEDD4-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.924133300781 2 541.760104 1081.50566 35804.6249646538 2.5951 0.0014059 423000 229.16 423000 229.16 770.922647155394 63.735 0.51492 63.735 63.433 63.948 0 40 17 3 0.947680345639462 0.00182317678814614 0.039334594314127 0.00051883 1 14945 104.24 59.702 3 25575000 21989 22139 19213 21641 24261 20950 27694 24809 22280 14929 20796 20911 19574 22239 24366 21107 27877 25185 22213 14631 1 1 1 1 1 1 1 1 1 1 267 167 235 249 298 298 4335 AGTQIENIDEDFRDGLK 17 Unmodified _AGTQIENIDEDFRDGLK_ 0 0 0 1 O43707 O43707 O43707 ACTN4 Alpha-actinin-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.093627929688 3 640.981438 1919.92248 36551.9046786048 2.4459 0.0015678 238350 152.78 238350 152.78 794.427863051471 81.724 0.43593 81.724 81.477 81.913 0 34 14 3 0.841210174739023 0.00141521453745899 0.0179756002210863 0.010003 1 19119 90.718 70.879 1 9338900 11150 13265 13232 13150 12076 12014 12273 14385 12417 17495 10558 12531 13191 13491 12326 12156 12487 14865 12245 16807 1 1 1 1 1 1 1 1 1 1 268 122 236 250 299 299 AGTVVLDDVELR 12 Acetyl (Protein N-term) _(ac)AGTVVLDDVELR_ 1 0 0 0 P25205 P25205 P25205 MCM3 DNA replication licensing factor MCM3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.858764648438 2 664.856449 1327.69835 38213.8775173238 1.8847 0.001253 2.1641 0.0014388 4.0488 0.0026919 664.858063499171 90.146 0.40751 90.146 89.956 90.364 0 24 13 2 0.98087895524332 0.000693025072338386 0.0536248040981163 3.6268E-07 1 21038 80.916 67.408 1 8085600 5627.2 4058.3 3963.5 3964.8 4461.9 4048.3 4001 4799.2 4687.9 10355 5318.6 3833.2 4091.9 4078 4492.7 4083 4113.6 5096.9 4596.4 9861.3 1 1 1 1 1 1 1 1 1 1 269 474 237 251 300 300 AHFNAMFQPSSPTR 14 Oxidation (M),Phospho (STY) _AHFNAM(ox)FQPSS(ph)PTR_ AHFNAM(1)FQPSSPTR AHFNAMFQPS(0.097)S(0.759)PT(0.144)R AHFNAM(103.29)FQPSSPTR AHFNAMFQPS(-8.92)S(7.23)PT(-7.23)R 0 1 1 0 Q8WUA4 Q8WUA4 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 639.630310058594 3 562.90799 1685.70214 39164.3462281587 1.0048 0.00056563 135700 76.387 135700 76.388 639.295434207999 52.093 1.3222 52.093 51.343 52.665 0 114 45 4 0.993888098272048 0.00411585767905338 0.0219704724202396 0.00018593 1 12114 103.29 87.743 3 64405000 10888 12553 11227 13171 10111 11276 11040 11569 12289 6524.7 10305 11862 11273 13455 10340 11403 11228 11790 12072 6411.5 1 1 1 1 1 1 1 1 1 1 270 1562 238 252 301 301 183 2871 AHFNAMFQPSSPTR 14 Phospho (STY) _AHFNAMFQPSS(ph)PTR_ AHFNAMFQPS(0.081)S(0.683)PT(0.235)R AHFNAMFQPS(-9.24)S(4.63)PT(-4.63)R 0 0 1 0 Q8WUA4 Q8WUA4 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.96484375 3 557.576352 1669.70723 39594.9101358775 1.585 0.00088375 137000 76.387 137000 76.388 633.963912566347 65.369 1.0176 65.369 64.908 65.926 0 130 34 6 0.812025696504491 0.00264751846670008 0.0656686884611333 3.3113E-05 1 15302 132.25 119.4 3 109210000 7636.4 7351 7633 7422.9 7620.7 8405.3 6175.9 7494.4 7756.1 6345.6 7226 6944.6 7683.4 7633 7715.3 8381.8 6399.1 7743.9 7585.9 6148.6 1 1 1 1 1 1 1 1 1 1 271 1562 238 253 302 302 2871 AHGSFSHVR 9 Phospho (STY) _AHGS(ph)FSHVR_ AHGS(0.86)FS(0.14)HVR AHGS(7.89)FS(-7.89)HVR 0 0 1 0 Q8N3D4 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 436.214263916016 3 359.825707 1076.45529 46196.3910346832 0.32557 0.00011715 212290 76.388 212290 76.388 436.213448206752 27.427 0.45603 27.427 27.238 27.694 0 38 15 3 0.738544953099794 0.00126697499458648 0.0110972652541568 0.00022675 1 6093 118.28 92.893 2 19059000 11935 12645 12327 13611 9720.8 12731 10664 12776 13113 2821.2 11295 11951 12360 13903 10034 12806 10877 12899 12834 2952.2 1 1 1 1 1 1 1 1 1 1 272 1461 239 254 303 303 2705 AHSHEEASRPAATSTR 16 Phospho (STY) _AHS(ph)HEEASRPAATSTR_ AHS(1)HEEASRPAATSTR AHS(71.86)HEEAS(-71.86)RPAAT(-92.67)S(-96.83)T(-105.65)R 0 0 1 1 Q96FS4 Q96FS4 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 504.992095947266 4 447.700974 1786.77479 43707.2167950168 1.2011 0.00053774 127970 57.291 127970 57.292 504.991690944024 19.876 0.83803 19.876 19.627 20.465 0 52 27 3 0.925639275830369 0.0169316740991862 0.149188703744945 5.0382E-05 1 4522 127.32 102.15 5 5285600 486.64 448.2 418.32 480.35 1322.8 239.55 2084.4 1122.8 131.12 513.36 460.23 423.58 437.66 487.38 1297.9 262.9 2031.7 1107.5 212.22 509.38 1 1 1 1 1 1 1 1 1 1 273 1678 240 255 304 304 3088 AHSIQIMK 8 Phospho (STY) _AHS(ph)IQIMK_ AHS(1)IQIMK AHS(104.79)IQIMK 0 0 1 0 Q02543 Q02543 Q02543 RPL18A 60S ribosomal protein L18a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 489.272155761719 3 336.496311 1006.4671 44394.8238886294 1.2063 0.00040592 454020 152.77 454020 152.78 489.271334635911 57.259 0.52105 57.259 56.985 57.506 0 49 17 4 0.97459763935702 0.00342225725058464 0.0578843986649558 0.00085875 1 13379 104.79 77.665 1 23208000 19366 13256 19662 12031 12784 20692 12979 15583 14512 1836.5 18326 12515 19698 12567 13384 20293 13244 15884 14254 2090 1 1 1 1 1 1 1 1 1 1 274 852 241 256 305 305 1374 AHSLLFENSDSFSEDSSTLGR 21 Phospho (STY) _AHS(ph)LLFENSDSFSEDSSTLGR_ AHS(1)LLFENSDSFSEDSSTLGR AHS(55.52)LLFENS(-55.52)DS(-84.2)FS(-109.12)EDS(-126.8)S(-129.12)T(-129.06)LGR 0 0 1 0 Q8IZ21 Q8IZ21 Q8IZ21 PHACTR4 Phosphatase and actin regulator 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 870.403991699219 3 793.676064 2378.00636 33499.5769598591 1.6277 0.0012918 96246 76.388 96247 76.389 870.400370632538 78.518 0.57373 78.518 78.261 78.835 0 53 19 4 0.633374341795518 0.00286569984753666 0.0403193646955975 1.0104E-07 1 18390 144.55 133.69 7 14384000 7516 8686.2 7748.3 8330.5 10276 7473.4 11636 8720.7 10306 28618 7112.9 8203.5 7822.2 8561.4 10297 7598.8 11742 9561.4 10225 27149 1 1 1 1 1 1 1 1 1 1 275 1439 242 257 306 306 2667 AHSPVAVQVPGMQNNIADPEELFTK 25 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)AHS(ph)PVAVQVPGM(ox)QNNIADPEELFTK_ AHSPVAVQVPGM(1)QNNIADPEELFTK AHS(1)PVAVQVPGMQNNIADPEELFTK AHSPVAVQVPGM(71.54)QNNIADPEELFTK AHS(69.2)PVAVQVPGMQNNIADPEELFT(-69.2)K 1 1 1 0 Q9P289 Q9P289 Q9P289 STK26 Serine/threonine-protein kinase 26 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1020.50531005859 3 944.108763 2829.30446 30595.7990834577 1.5595 0.0014724 80910 76.388 80912 76.39 1020.83143983098 95.642 0.66533 95.642 95.333 95.999 0 100 22 6 0.973872742551511 0.00165034941801928 0.0282530649774316 1.5502E-06 1 22209 71.54 51.987 2 44203000 4234.6 6226.7 4095.3 5892.5 7652.6 4330 7385.5 6864.2 6591.7 41054 4006.5 5880.3 4174.8 6045.5 7551.3 4519 7508.9 8024.1 6537.7 38816 1 1 1 1 1 1 1 1 1 1 276 2104 243 258 307 307 222 3801 AHSPVAVQVPGMQNNIADPEELFTK 25 Acetyl (Protein N-term),Phospho (STY) _(ac)AHS(ph)PVAVQVPGMQNNIADPEELFTK_ AHS(1)PVAVQVPGMQNNIADPEELFTK AHS(73.37)PVAVQVPGMQNNIADPEELFT(-73.37)K 1 0 1 0 Q9P289 Q9P289 Q9P289 STK26 Serine/threonine-protein kinase 26 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1015.50079345703 3 938.777125 2813.30955 30845.7897639214 1.7299 0.001624 81369 76.387 81371 76.389 1015.49930163988 100.24 0.19697 100.24 100.17 100.37 0 23 6 6 0.990099969488279 0.0157052766838017 0.119385439144024 5.7811E-12 1 23412 74.876 63.254 2 556440000 39943 68332 52024 77997 109070 51731 89502 88792 84847 111980 37842 64605 52352 79073 107030 53701 91917 91003 83916 107500 1 1 1 1 1 1 1 1 1 1 277 2104 243 259 308 308 3801 AHTPLNTPDPSTK 13 Phospho (STY) _AHT(ph)PLNTPDPSTK_ AHT(1)PLNTPDPSTK AHT(59.97)PLNT(-59.97)PDPS(-114.09)T(-117.02)K 0 0 1 0 Q9BYW2 Q9BYW2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.003479003906 3 486.892334 1457.65517 39547.5267322523 2.227 0.0010843 313780 152.78 313780 152.78 640.003233285376 42.088 0.74036 42.088 41.798 42.538 0 79 25 7 0.85191247223158 0.00170215598323634 0.0221817605122418 9.2676E-07 1 9589 142.32 121.94 4 27241000 16373 16414 17051 14559 13844 17602 17126 15786 16021 5456.8 15495 15495 17097 15111 14284 17495 17245 16069 15855 5503.6 1 1 1 1 1 1 1 1 1 1 278 1872 244 260 309 309 4759 AHTPTPGIYMGR 12 Oxidation (M),Phospho (STY) _AHT(ph)PTPGIYM(ox)GR_ AHTPTPGIYM(1)GR AHT(0.873)PT(0.127)PGIY(0.001)MGR AHTPTPGIYM(70.52)GR AHT(8.38)PT(-8.38)PGIY(-30.29)MGR 0 1 1 0 Q13595 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 813.390747070313 2 698.807594 1395.60064 34492.023976044 2.0933 0.0014628 163970 114.58 163970 114.58 813.389836713867 38.648 0.52178 38.648 38.411 38.933 0 56 17 5 0.975686932269479 0.000803592834718247 0.0183270139165231 0.03106 1 8763 70.524 31.89 3 18513000 15184 17021 14107 14127 15179 15794 13624 14991 16495 11055 14364 16063 14277 14708 15321 15767 14021 15401 16154 10757 1 1 1 1 1 1 1 1 1 1 279 970 245 261 310 310 129 4549;4550 AHTPTPGIYMGR 12 Phospho (STY) _AHT(ph)PTPGIYMGR_ AHT(0.996)PT(0.004)PGIYMGR AHT(24.12)PT(-24.12)PGIY(-146.14)MGR 0 0 1 0 Q13595 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.264343261719 3 460.87585 1379.60572 42129.5448585116 0.77835 0.00035872 165740 76.388 165750 76.388 537.263813265041 50.089 0.8145 50.089 49.718 50.533 -7.1054E-15 97 27 5 0.912404254573492 0.0109018658761241 0.20688048266838 9.4324E-11 1 11591 185.32 145.26 3 449700000 17206 19787 14852 17559 14872 17660 15220 18284 19086 2033.7 16272 18679 15091 18167 15100 17709 15582 18377 18668 2338.2 1 1 1 1 1 1 1 1 1 1 280 970 245 262 311 311 4549;4550 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 Phospho (STY) _AHTPT(ph)PGIYMGRPTHSGGGGGGGGGGGGGGGGR_ AHT(0.423)PT(0.576)PGIY(0.001)MGRPTHSGGGGGGGGGGGGGGGGR AHT(-1.35)PT(1.35)PGIY(-28.5)MGRPT(-46.44)HS(-57.15)GGGGGGGGGGGGGGGGR 0 0 1 1 Q13595 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.11181640625 4 718.567685 2870.24163 35833.5442612947 1.0502 0.00075461 79729 57.291 79730 57.292 776.109940582153 36.815 0.40763 36.815 36.72 37.128 0 25 13 3 0.686868388407213 0.000456766660731509 0.00862341378239841 0.0052575 1 8340 79.731 71.738 5 12608000 6455 5517.5 5962.3 5723.4 7724.3 6610.2 6679.5 6879.7 7221.6 6139.1 6106.3 5213.4 6051.6 5878.3 7720.3 6601.1 6864.2 7075.3 7102.6 5939.9 1 1 1 1 1 1 1 1 1 1 281 970 246 263 312 312 4549;4550 AIEDEGGNPDEIEITSEGNKK 21 Unmodified _AIEDEGGNPDEIEITSEGNKK_ 0 0 0 1 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 978.520080566406 3 749.020398 2244.03936 32395.8385340107 1.3151 0.00098501 305950 229.16 305950 229.16 978.517934940964 62.267 0.28255 62.267 62.122 62.405 0 22 9 3 0.94411364547032 0.00160130637714083 0.0413553283180034 2.7941E-16 1 14627 225.23 192.42 1 16000000 9355.2 10652 9293.9 10805 11244 9754.1 10949 10211 12647 11240 8852.2 10064 9385.3 11068 11293 9850.8 11206 10563 12406 10820 1 1 1 1 1 1 1 1 1 1 282 1076 247 264 313 313 AIEEGTLEEIEEEVR 15 Unmodified _AIEEGTLEEIEEEVR_ 0 0 0 0 P51532 P51532 P51532 SMARCA4 Transcription activator BRG1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.008728027344 3 582.619506 1744.83669 41886.752566872 1.967 0.001146 131110 76.388 131110 76.389 659.007785919328 95.639 0.42982 95.639 95.479 95.909 0 36 14 4 0.681070161371284 0.00103459713650758 0.0399924721780124 7.0516E-07 1 22287 146.96 105.31 1 4942000 3497.6 3911.7 3019.5 2914.1 2782.7 3398.8 2494.2 3808.5 3851.9 9326.7 3307.8 3689.6 3064.5 3060.8 2835 3407.9 2589.9 4085.3 3743.1 8870.3 1 1 1 1 1 1 1 1 1 1 283 679 248 265 314 314 AIGGIILTASHNPGGPNGDFGIK 23 Phospho (STY) _AIGGIILTAS(ph)HNPGGPNGDFGIK_ AIGGIILT(0.008)AS(0.992)HNPGGPNGDFGIK AIGGIILT(-20.73)AS(20.73)HNPGGPNGDFGIK 0 0 1 0 P36871 P36871 P36871 PGM1 Phosphoglucomutase-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.122863769531 4 572.287413 2285.12055 37580.04624044 1.7831 0.0010204 200220 114.58 200220 114.58 687.119671893517 92.01 1.0306 92.01 91.712 92.742 0 125 35 6 0.977695804921389 0.0032137899087447 0.0584367999261181 1.6585E-18 1 21396 246.21 219.15 2 68151000 7565 2755.9 6743.2 2039.9 4395.8 6615.5 2513.5 5352.6 2818.4 38323 7155.4 2599.4 6804.9 2211.7 4573.2 6483.2 2657.3 6572.7 2767.9 36210 1 1 1 1 1 1 1 1 1 1 284 558 249 266 315 315 903 AIGNNSATSPR 11 Phospho (STY) _AIGNNSATS(ph)PR_ AIGNNSAT(0.009)S(0.991)PR AIGNNS(-38.73)AT(-20.35)S(20.35)PR 0 0 1 0 Q9NYJ8 Q9NYJ8 Q9NYJ8 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.841186523438 2 584.261334 1166.50812 34447.9813645927 1.7382 0.0010156 196120 114.58 196120 114.58 698.842772477301 32.58 0.32327 32.58 32.413 32.736 0 26 10 3 0.654618248613022 0.000840383532906475 0.0162052213457532 0.010329 1 7283 82.278 42.355 3 9534600 14536 12781 12768 11882 14339 12883 13524 12634 12371 3654.7 13748 12068 12976 12271 14446 12872 13774 12793 12255 3733.7 1 1 1 1 1 1 1 1 1 1 285 2074 250 267 316 316 3757 AIGSTSKPQESPK 13 Phospho (STY) _AIGSTSKPQES(ph)PK_ AIGS(0.019)T(0.019)S(0.019)KPQES(0.943)PK AIGS(-16.96)T(-16.96)S(-16.96)KPQES(16.96)PK 0 0 1 1 P18887 P18887 P18887 XRCC1 DNA repair protein XRCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.725769042969 3 470.560585 1408.65992 37947.0515989597 2.2112 0.0010405 487000 229.16 487000 229.17 699.725878245854 44.115 1.7708 44.115 43.58 45.351 -7.1054E-15 102 60 5 0.75932691519502 0.00277094178213178 0.0302785543173282 0.0071856 1 10168 80.638 50.95 4 73734000 48297 49192 52500 44656 49967 58163 49923 53738 57017 6989.8 45717 46444 52592 46345 50862 57654 51014 54285 55957 7825.4 1 1 1 1 1 1 1 1 1 1 286 435 251 268 317 317 707 AILGSYDSELTPAEYSPQLTR 21 Phospho (STY) _AILGSYDSELTPAEYS(ph)PQLTR_ AILGSYDSELT(0.001)PAEY(0.003)S(0.983)PQLT(0.013)R AILGS(-84.53)Y(-109.53)DS(-62.84)ELT(-28.49)PAEY(-24.9)S(18.82)PQLT(-18.82)R 0 0 1 0 Q9Y6D9 Q9Y6D9 Q9Y6D9 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 874.431396484375 3 797.708705 2390.10429 33271.3972991658 1.7456 0.0013925 95759 76.388 95761 76.389 874.431104849866 90.495 0.59636 90.495 90.221 90.818 0 58 20 4 0.985094099605479 0.00491375832112209 0.14536781562653 9.0252E-08 1 21090 147.91 112.47 7 22464000 7266.9 7299.6 6389.5 7363 7013 7376.2 8211 6879 9241.5 19514 6873 6896.1 6494.2 7556.5 7097.9 7423.5 8328.8 7507.4 9074.9 18534 1 1 1 1 1 1 1 1 1 1 287 2312 252 269 318 318 4264 AILVDLEPGTMDSVR 15 Unmodified _AILVDLEPGTMDSVR_ 0 0 0 0 P07437;Q9BVA1;Q13885;Q13509 P07437 P07437 TUBB;TUBB2B;TUBB2A;TUBB3 Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.008605957031 2 808.42163 1614.82871 34162.1605353315 2.0088 0.0016239 141740 114.58 141740 114.58 923.003745366766 92.937 0.49764 92.937 92.742 93.24 0 34 16 3 0.788338063539792 0.000860308314236835 0.0212114644459973 0.00031483 1 21635 158.01 112.04 1 8673300 8514.5 10347 8536.8 9816 10097 8681.4 9052.1 11138 10950 37607 8057 9771 8611.9 10093 10141 8854 9316.4 12210 10724 35669 1 1 1 1 1 1 1 1 1 1 288 320 253 270 319 319 AIPELDAYEAEGLALDDEDVEELTASQR 28 Unmodified _AIPELDAYEAEGLALDDEDVEELTASQR_ 0 0 0 0 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1098.54113769531 3 1021.48233 3061.42515 29507.2159438514 2.0217 0.0020651 74781 76.388 74783 76.39 1098.53954917823 100.21 0.11408 100.21 100.14 100.26 0 10 3 4 0.977543205473962 0.001473886465537 0.0424715131276901 3.4627E-05 1 23402 129.24 114.94 1 105170000 10533 9545 9485.7 8368.4 13483 10497 10016 10408 12727 93680 9963 9010.1 9654.2 8698.4 13400 10602 10436 13266 12443 88451 1 1 1 1 1 1 1 1 1 1 289 647 254 271 320 320 AIPELDAYEAEGLALDDEDVEELTASQR 28 Phospho (STY) _AIPELDAYEAEGLALDDEDVEELTAS(ph)QR_ AIPELDAYEAEGLALDDEDVEELT(0.005)AS(0.995)QR AIPELDAY(-240)EAEGLALDDEDVEELT(-23.38)AS(23.38)QR 0 0 1 0 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.147827148438 4 786.355146 3141.39148 34406.3884668949 1.6049 0.001262 72855 57.29 72857 57.291 843.895886003002 100.66 0.82264 100.66 100.42 101.24 1.4211E-14 91 28 8 0.987207240070073 0.022859711872449 0.222709892799234 1.3255E-25 1 23548 273.84 260.77 3 322510000 3314.3 4266.2 3775.6 3853.7 1784.8 2963.4 3150.4 3904 3597.5 56643 3137.9 4027.7 3753.5 3967.8 1948.5 3128.6 3153.5 5586.4 3530.7 53427 1 1 1 1 1 1 1 1 1 1 290 647 254 272 321 321 1069 AIPELDAYEAEGLALDDEDVEELTASQR 28 Phospho (STY) _AIPELDAYEAEGLALDDEDVEELTAS(ph)QR_ AIPELDAYEAEGLALDDEDVEELT(0.018)AS(0.982)QR AIPELDAY(-147.23)EAEGLALDDEDVEELT(-17.49)AS(17.49)QR 0 0 1 0 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1125.19677734375 3 1048.13777 3141.39148 29564.588653684 0.62603 0.00065617 72880 76.388 72880 76.388 1124.86006158536 100.66 1.6781 100.66 100.42 102.1 0 235 58 9 0.951758882315357 0.00160120961104126 0.024444466237706 3.0668E-08 2 23915 170.97 160.91 3 1235600000 11225 12958 10669 9444.2 12965 15482 12177 16544 13160 216360 10620 12221 10802 10009 13011 15670 12460 23073 12943 204110 2 2 2 2 2 2 2 2 2 2 291 647 254 272 322;323 323 1069 AIPELDAYEAEGLALDDEDVEELTASQR 28 Phospho (STY) _AIPELDAYEAEGLALDDEDVEELTAS(ph)QR_ AIPELDAYEAEGLALDDEDVEELT(0.005)AS(0.995)QR AIPELDAY(-157.91)EAEGLALDDEDVEELT(-23.01)AS(23.01)QR 0 0 1 0 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1124.85375976563 3 1048.13777 3141.39148 30113.4319334276 0.49852 0.00052251 72879 76.387 72880 76.388 1124.85908889702 102.89 0.34593 102.89 102.63 102.97 0 14 11 2 0.904803849586734 0.00037223313804114 0.0083018726131792 5.8221E-09 1 24267 175.06 162.75 3 8786700 3208.2 2255.5 2119.7 2508.4 2068.4 2282.8 2970.2 3492 3038.6 55108 3031.7 2132.1 2198 2556.5 2114.8 2417.1 2981.9 5116.4 2995.3 51972 1 1 1 1 1 1 1 1 1 1 292 647 254 272 324 324 1069 AIPELDAYEAEGLALDDEDVEELTASQR 28 Phospho (STY) _AIPELDAYEAEGLALDDEDVEELTAS(ph)QR_ AIPELDAYEAEGLALDDEDVEELT(0.008)AS(0.992)QR AIPELDAY(-142.2)EAEGLALDDEDVEELT(-21.21)AS(21.21)QR 0 0 1 0 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1124.86047363281 3 1048.13777 3141.39148 31280.6946636444 1.3024 0.0013651 72879 76.388 72881 76.389 1125.19326662481 105.65 0.90991 105.65 105.23 106.14 -1.4211E-14 53 31 3 0.773632032073667 0.000795137650742674 0.0200298985104071 1.0116E-07 2 24821 159.36 149.38 3 1953000 1335.3 1134.9 458.06 1323.2 1082.3 442.26 501.78 1958.5 880.99 28314 1260.2 1073.2 518.23 1333 1053.6 554.95 497.99 2758.9 853.19 26706 2 2 2 2 2 2 1 2 2 2 293 647 254 272 325;326 325 1069 AIPELDAYEAEGLALDDEDVEELTASQREAAER 33 Phospho (STY) _AIPELDAYEAEGLALDDEDVEELTAS(ph)QREAAER_ AIPELDAYEAEGLALDDEDVEELT(0.461)AS(0.539)QREAAER AIPELDAY(-231.88)EAEGLALDDEDVEELT(-0.69)AS(0.69)QREAAER 0 0 1 1 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 983.215026855469 4 925.420278 3697.652 31392.6615116201 1.237 0.0011448 61909 57.292 61910 57.293 982.962463119934 99.337 0.39988 99.337 99.236 99.636 0 61 13 7 0.923792938276896 0.0111737602288059 0.347683848778362 1.4438E-25 1 23102 266.71 247.33 3 303600000 3772.3 3975.1 3413 5077.9 3872.8 4224.3 4981.8 7868.7 4593.7 63932 3568.2 3761.4 3465.1 5132.9 3918.3 4438.4 5007.1 9678.1 4549.1 60382 1 1 1 1 1 1 1 1 1 1 294 647 255 273 327 327 1069 AIPGDQHPESPVHTEPMGIQGR 22 Oxidation (M),Phospho (STY) _AIPGDQHPES(ph)PVHTEPM(ox)GIQGR_ AIPGDQHPESPVHTEPM(1)GIQGR AIPGDQHPES(0.989)PVHT(0.011)EPMGIQGR AIPGDQHPESPVHTEPM(103.04)GIQGR AIPGDQHPES(19.39)PVHT(-19.39)EPMGIQGR 0 1 1 0 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 893.760986328125 3 817.037051 2448.08932 32970.5977046493 1.4426 0.0011786 93493 76.388 93495 76.389 893.758380775952 44.288 0.74661 44.288 43.934 44.681 0 68 25 4 0.965518303291108 0.00104188355467709 0.00886121341072755 6.9118E-05 1 10185 103.04 88.271 2 22678000 21094 20266 21881 19991 16501 22234 19052 19724 23473 8521.3 19963 19143 21926 20579 17103 22171 19391 20138 22974 8480.3 1 1 1 1 1 1 1 1 1 1 295 1016 256 274 328 328 133 1727 AIPGDQHPESPVHTEPMGIQGR 22 Phospho (STY) _AIPGDQHPES(ph)PVHTEPMGIQGR_ AIPGDQHPES(0.999)PVHT(0.001)EPMGIQGR AIPGDQHPES(31.01)PVHT(-31.01)EPMGIQGR 0 0 1 0 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 888.429260253906 3 811.705412 2432.09441 32762.7386452798 0.85815 0.00069657 94108 76.388 94108 76.388 888.427606080011 52.025 0.60384 52.025 51.747 52.351 0 78 20 5 0.981273510065604 0.00380367849344957 0.010266136105979 1.3767E-17 2 12064 245.2 217.81 2 54701000 20877 17227 23460 19408 16098 21780 17417 19823 18132 14561 19765 16286 23387 19833 16791 21728 17685 20399 17860 14170 2 2 2 2 2 2 2 2 2 2 296 1016 256 275 329;330 329 1727 AISAPTSPTR 10 Phospho (STY) _AISAPTS(ph)PTR_ AISAPT(0.006)S(0.991)PT(0.002)R AIS(-52.74)APT(-21.86)S(21.86)PT(-26.19)R 0 0 1 0 Q9NQG6 Q9NQG6 Q9NQG6 MIEF1 Mitochondrial dynamics protein MID51 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.33984375 2 540.757896 1079.50124 37566.8929000699 1.9677 0.001064 211890 114.58 211890 114.58 655.339005211301 41.842 0.65343 41.842 41.512 42.165 0 89 22 5 0.455263249264811 0.00317612372296906 0.0446515761819976 0.0013729 1 9519 99.539 75.203 4 122830000 61915 81802 56992 79397 48171 55152 41225 65898 90493 13365 58569 77261 57550 81280 49353 56523 43646 66087 87200 14110 1 1 1 1 1 1 1 1 1 1 297 2005 257 276 331 331 3640 AISSANLLVR 10 Phospho (STY) _AISS(ph)ANLLVR_ AIS(0.36)S(0.64)ANLLVR AIS(-2.5)S(2.5)ANLLVR 0 0 1 0 Q32P44 Q32P44 Q32P44 EML3 Echinoderm microtubule-associated protein-like 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.879333496094 2 562.297188 1122.57982 38113.6043166 1.4829 0.00083381 203770 114.58 203780 114.58 676.878894258924 76.265 0.61198 76.265 75.975 76.587 0 53 20 4 0.975825827701048 0.00639930895828881 0.202630119118632 1.9691E-09 1 17873 179.67 142.91 2 61719000 22327 15559 22247 13832 22815 18771 22741 19583 14772 6471.9 21126 14688 22413 14387 23111 18617 22934 19807 14913 6547.3 1 1 1 1 1 1 1 1 1 1 298 1126 258 277 332 332 1963;1964 AISSDMFFGR 10 Oxidation (M),Phospho (STY) _AISS(ph)DM(ox)FFGR_ AISSDM(1)FFGR AIS(0.283)S(0.717)DMFFGR AISSDM(109.39)FFGR AIS(-4.03)S(4.03)DMFFGR 0 1 1 0 Q8N6H7 Q8N6H7 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.332946777344 2 613.749214 1225.48387 37426.5559500931 1.545 0.00094826 186690 114.58 186690 114.58 728.330854407807 76.14 0.66925 76.14 75.832 76.501 0 61 22 3 0.903891856201206 0.00133989470218545 0.0516838270422879 0.00030687 1 17846 109.39 27.466 2 13786000 10321 13840 13331 13069 8850.6 11420 8277.7 11992 12941 10860 9777.2 13070 13195 13440 9242.5 11548 8581.2 12333 12571 10503 1 1 1 1 1 1 1 1 1 1 299 1479 259 278 333 333 176 2728;2729 AISSDMFFGR 10 Phospho (STY) _AIS(ph)SDMFFGR_ AIS(0.778)S(0.222)DMFFGR AIS(5.46)S(-5.46)DMFFGR 0 0 1 0 Q8N6H7 Q8N6H7 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.333374023438 2 605.751756 1209.48896 37117.9579943977 2.1625 0.0013099 189160 114.58 189160 114.58 720.333038550055 90.295 1.128 90.295 89.956 91.084 0 124 38 5 0.995625304787667 0.0023253676253999 0.139904101599844 1.8826E-06 1 20999 158.56 123.21 2 77244000 14644 17324 17512 16485 11381 17423 12893 15642 18943 17699 13868 16361 17396 16992 11939 17433 13217 16292 18434 17028 1 1 1 1 1 1 1 1 1 1 300 1479 259 279 334 334 2728;2729 AISWTMK 7 Phospho (STY) _AISWT(ph)MK_ AIS(0.292)WT(0.708)MK AIS(-3.84)WT(3.84)MK 0 0 1 0 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.866455078125 2 458.703547 915.39254 37103.5208674994 2.1142 0.00096981 499590 229.16 499590 229.16 687.866408059684 83.463 0.69732 83.463 83.115 83.813 0 81 23 5 0.642845739419492 0.00219155209314652 0.0436609872355902 0.0061895 1 19477 96.936 44.219 2 51457000 7915.9 25680 9167.8 25392 32357 7901.5 34822 21519 24231 8969.7 7495.2 24257 9448 25808 31492 8888.4 35037 21327 24358 8944.1 1 1 1 1 1 1 1 1 1 1 301 2028 260 280 335 335 3682;4780 AISWTMK 7 Oxidation (M),Phospho (STY) _AIS(ph)WTM(ox)K_ AISWTM(1)K AIS(0.983)WT(0.017)MK AISWTM(47.96)K AIS(17.64)WT(-17.64)MK 0 1 1 0 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.864929199219 2 466.701004 931.387455 NaN NaN NaN NaN NaN NaN NaN NaN 70.894 1 70.894 70.394 71.394 0 NaN NaN NaN 0.049275 1 16637 47.96 28.689 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 302 2028 260 281 336 336 215 3682;4780 AITPPQQPYK 10 Phospho (STY) _AIT(ph)PPQQPYK_ AIT(1)PPQQPYK AIT(90.16)PPQQPY(-90.16)K 0 0 1 0 Q9NYV4 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 560.976501464844 3 408.20044 1221.57949 41648.9486644163 1.4875 0.00060719 374270 152.78 374270 152.78 560.97618906685 59.85 1.6723 59.85 58.609 60.282 0 100 57 2 0.706350994842048 0.00224642233083294 0.0652964668900339 0.0012688 1 13960 99.589 72.882 2 20567000 12703 16959 11576 14192 12717 13152 10616 11773 16352 3300 12016 16005 11731 14724 12814 13218 11064 11962 15891 3379.8 1 1 1 1 1 1 1 1 1 1 303 2077 261 282 337 337 4790 AITSLLGGGSPK 12 Phospho (STY) _AITSLLGGGS(ph)PK_ AITSLLGGGS(1)PK AIT(-64.45)S(-48.47)LLGGGS(48.47)PK 0 0 1 0 Q6KC79 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.966186523438 2 590.802304 1179.59005 34771.3228401998 2.0749 0.0012258 387880 229.16 387890 229.16 819.965378636493 89.278 1.16 89.278 88.882 90.042 0 129 39 5 0.983371392685139 0.00249307667467416 0.0551481178627398 1.1993E-10 1 20761 179.79 121.11 3 205460000 19906 15025 18996 16001 17918 19791 18643 18948 15913 26856 18833 14199 19168 16430 18255 19709 18868 19848 15817 25727 1 1 1 1 1 1 1 1 1 1 304 1244 262 283 338 338 2202 AKADSPVNGLPK 12 Phospho (STY) _AKADS(ph)PVNGLPK_ AKADS(1)PVNGLPK AKADS(123.36)PVNGLPK 0 0 1 1 Q96S94 Q96S94 Q96S94 CCNL2 Cyclin-L2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.712585449219 3 426.214749 1275.62242 39479.1488012452 2.788 0.0011883 537670 229.16 537670 229.16 655.377873528597 53.841 0.52295 53.841 53.625 54.148 -7.1054E-15 52 17 4 0.965830332534725 0.00297168204686627 0.0213567460236359 6.2007E-05 1 12546 123.36 104.15 1 22305000 21002 16906 19998 17662 36218 20542 34164 26377 18068 12115 19869 15975 20389 18135 35752 20558 34434 26597 18510 12018 1 1 1 1 1 1 1 1 1 1 305 1746 263 284 339 339 3203 AKEESPSK 8 Phospho (STY) _AKEES(ph)PSK_ AKEES(0.961)PS(0.039)K AKEES(13.91)PS(-13.91)K 0 0 1 1 Q6ZN18 Q6ZN18 Q6ZN18 AEBP2 Zinc finger protein AEBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.3095703125 3 319.14259 954.405942 42151.880723152 1.8887 0.00060275 718060 229.16 718070 229.17 548.307136461367 31.823 0.5908 31.823 31.617 32.208 0 45 19 4 0.948192450120458 0.00413934516085692 0.0559969193205054 0.021004 1 7111 57.583 22.169 2 26832000 41709 16113 41291 17057 17971 40894 17968 24824 19199 3617.5 39466 15227 41316 17839 19615 39732 18324 25632 18891 3980.8 1 1 1 1 1 1 1 1 1 1 306 1291 264 285 340 340 2304 AKEQEAEPEEQEEDSSSDPR 20 Unmodified _AKEQEAEPEEQEEDSSSDPR_ 0 0 0 1 P55081 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 917.10302734375 3 763.991167 2288.95167 33023.4653615619 1.8525 0.0014153 199970 152.78 199970 152.78 917.434684607424 31.648 0.34985 31.648 31.471 31.821 0 28 11 3 0.967548145333118 0.00132459388890379 0.00608257916648797 2.272E-11 1 7072 206.34 174.52 1 13915000 6736.3 6565.2 7093.1 6699.5 5936.1 8539.8 6614.8 7236.8 7857.2 3113.2 6375.6 6202.7 7109 6900.2 6103.1 8467.2 6734.7 7403.3 7700 3098.9 1 1 1 1 1 1 1 1 1 1 307 719 265 286 341 341 AKEVELVSE 9 Phospho (STY) _AKEVELVS(ph)E_ AKEVELVS(1)E AKEVELVS(79.82)E 0 0 1 1 O60832 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.419799804688 2 542.252112 1082.48967 35543.6112235572 2.584 0.0014012 422610 229.16 422620 229.16 771.415039104697 61.149 2.0411 61.149 60.776 62.817 0 198 69 5 0.722565684171263 0.00250690850990114 0.10999883646426 0.010304 2 14284 79.82 62.495 1 334700000 48886 63662 48335 71545 58937 44501 63056 60172 73023 40456 46256 60184 48840 72544 59252 46085 64261 60968 71630 39487 2 2 2 2 2 2 2 2 2 2 308 159 266 287 342;343 342 271 AKGPSPPGAK 10 Phospho (STY) _AKGPS(ph)PPGAK_ AKGPS(1)PPGAK AKGPS(60.4)PPGAK 0 0 1 1 Q96S55 Q96S55 Q96S55 WRNIP1 ATPase WRNIP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.662475585938 3 330.498709 988.474296 41214.044205056 2.0536 0.0006787 693390 229.16 693390 229.16 559.661846890493 39.326 1.2199 39.326 38.495 39.715 0 108 41 3 0.908483769470005 0.00228853364188668 0.0252175453454919 0.016219 1 8872 60.401 28.338 1 19514000 11595 18170 13313 16987 11767 11856 11377 14209 18713 2286.6 10978 17158 13287 17432 12034 12147 11800 14230 18153 2481.9 1 1 1 1 1 1 1 1 1 1 309 1743 267 288 344 344 3197 AKNSPPQAPSTR 12 Phospho (STY) _AKNS(ph)PPQAPSTR_ AKNS(1)PPQAPSTR AKNS(43.33)PPQAPS(-43.33)T(-43.33)R 0 0 1 1 Q8N1F8 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.98876953125 3 445.213519 1332.61873 40826.5318925508 1.8997 0.00084578 343150 152.78 343150 152.78 598.323894645609 31.099 1.2541 31.099 30.103 31.358 0 125 41 5 0.989501881737629 0.00207583954354136 0.0601640277986203 0.0091824 1 6873 73.498 53.659 3 22420000 11076 8134.2 12149 9137.9 10389 12382 11026 10525 9483 2408.6 10485 7689.8 12152 9373.3 10654 12247 11151 10701 9422.3 2511.5 1 1 1 1 1 1 1 1 1 1 310 1454 268 289 345 345 2691 AKPAMPQDSVPSPR 14 Phospho (STY) _AKPAMPQDSVPS(ph)PR_ AKPAMPQDSVPS(1)PR AKPAMPQDS(-42.33)VPS(42.33)PR 0 0 1 1 P53396 P53396 P53396 ACLY ATP-citrate synthase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.023254394531 3 520.912852 1559.71673 38028.7449316713 1.6375 0.00085301 293280 152.77 293280 152.78 673.687968804589 50.089 0.78574 50.089 49.718 50.504 0 122 26 6 0.995228426930954 0.00825180776245156 0.140067257693509 6.8467E-07 1 11579 146.78 119.29 2 292290000 21330 22541 19295 22432 26224 20706 30139 26367 20983 6366.4 20176 21293 19638 23011 26250 20914 30240 26421 21092 6605 1 1 1 1 1 1 1 1 1 1 311 702 269 290 346 346 1179 AKPASPAR 8 Phospho (STY) _AKPAS(ph)PAR_ AKPAS(1)PAR AKPAS(60.31)PAR 0 0 1 1 P78559 P78559 P78559 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.380615234375 2 439.21821 876.421867 39518.8566362564 1.8017 0.00079136 521750 229.16 521750 229.16 668.380669409781 26.933 0.261 26.933 26.799 27.06 0 22 8 3 0.844580953653179 0.00136719191079645 0.0180062094623651 0.026963 1 6000 60.305 45.611 1 13715000 6234.6 21419 5824 21659 6714.9 5986 5540 12711 25438 8591.7 5898 20235 5896.7 21973 6763.9 6800.1 6240.5 12748 24255 8384.3 1 1 1 1 1 1 1 1 1 1 312 806 270 291 347 347 1286 AKPVGSPLFK 10 Phospho (STY) _AKPVGS(ph)PLFK_ AKPVGS(1)PLFK AKPVGS(123.29)PLFK 0 0 1 1 Q92576 Q92576 Q92576 PHF3 PHD finger protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 604.366882324219 3 375.201892 1122.58385 40640.7598495805 1.5552 0.0005835 610770 229.16 610770 229.16 604.699308039038 70.418 0.95078 70.418 69.904 70.855 0 100 32 4 0.847932498795141 0.00212873973785631 0.0352049854677799 0.00011112 1 16453 123.29 95.278 1 35703000 14151 11942 13723 10927 8806.8 16780 10688 11134 12485 5115.8 13389 11275 13786 11376 9255.8 16497 10838 11541 12243 5074.9 1 1 1 1 1 1 1 1 1 1 313 1602 271 292 348 348 2940 AKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR 36 Unmodified _AKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR_ 0 0 0 1 P49321 P49321 P49321 NASP Nuclear autoantigenic sperm protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1059.24731445313 4 944.412142 3773.61946 30600.9549688029 2.1287 0.0020104 121330 114.58 121330 114.58 1059.24461786914 62.963 0.37619 62.963 62.761 63.138 0 44 12 5 0.968472733774766 0.00306687617431742 0.0314678893741041 3.3191E-19 2 14794 247.36 233.72 1 25015000 5100.3 6772.8 5008.8 6327.5 6717 5480.4 8013.9 6347.7 7453.8 12546 4825.8 6395.5 5072.2 6510.4 6733.4 5565.6 8079.8 6711.7 7378.5 11960 2 2 2 2 2 2 2 2 2 2 314 635 272 293 349;350 349 AKSLDGVTNDR 11 Phospho (STY) _AKS(ph)LDGVTNDR_ AKS(1)LDGVTNDR AKS(47.92)LDGVT(-47.92)NDR 0 0 1 1 Q9UBM7 Q9UBM7 Q9UBM7 DHCR7 7-dehydrocholesterol reductase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 571.969970703125 3 419.194125 1254.56054 41581.412566741 2.5025 0.001049 364450 152.78 364450 152.78 571.969101984719 45.995 0.73312 45.995 45.673 46.406 0 73 24 4 0.849010345359813 0.00632835566997056 0.125077829374325 0.00017165 1 10610 101.9 63.385 2 46013000 24133 43534 28776 50519 66078 27136 57384 45404 49685 1871.7 22854 41165 29149 51069 64723 28476 58618 44892 49350 2813.3 1 1 1 1 1 1 1 1 1 1 315 2123 273 294 351 351 3823 AKSLDRR 7 Phospho (STY) _AKS(ph)LDRR_ AKS(1)LDRR AKS(54.61)LDRR 0 0 1 2 Q6WCQ1 Q6WCQ1 Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 462.263916015625 3 309.158686 924.454229 45518.6799945964 0.97325 0.00030089 494160 152.78 494160 152.78 461.934590122429 28.23 0.5453 28.23 28.035 28.581 -3.5527E-15 44 18 4 0.590643169178432 0.00379583733603603 0.082523338287305 0.041506 2 6274 54.608 17.914 1 18043000 33018 31914 32757 32136 34531 33270 36084 32895 34688 5286 31242 30149 33024 33001 34958 33302 36618 33170 34286 5738.7 2 2 2 2 2 2 2 2 2 2 316 1285 274 295 352;353 352 2287 AKSPENSTLEEILGQYQR 18 Acetyl (Protein N-term),Phospho (STY) _(ac)AKS(ph)PENSTLEEILGQYQR_ AKS(0.825)PENS(0.109)T(0.065)LEEILGQYQR AKS(8.78)PENS(-8.78)T(-11.03)LEEILGQY(-41.49)QR 1 0 1 1 Q86SQ7 Q86SQ7 Q86SQ7 SDCCAG8 Serologically defined colon cancer antigen 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.398864746094 3 729.010607 2184.00999 34858.0577775166 1.7004 0.0012396 104780 76.389 104790 76.39 805.399392928846 99.799 0.19985 99.799 99.665 99.864 0 16 6 4 0.98578216273224 0.00163548703432893 0.0820766318158863 8.5503E-08 1 23236 43.955 28.8 4 41627000 8398.1 15698 9271.7 12589 8988 10831 9681.3 10155 13758 34502 7950 14812 9283.7 13088 9151.4 10992 9933.1 11252 13402 32723 1 1 1 1 1 1 1 1 1 1 317 1359 275 296 354 354 2469 AKSPSQK 7 Phospho (STY) _AKS(ph)PSQK_ AKS(0.962)PS(0.038)QK AKS(14.08)PS(-14.08)QK 0 0 1 1 O75367 O75367 O75367 H2AFY Core histone macro-H2A.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 504.962951660156 3 275.800388 824.379333 43908.5010187111 2.0493 0.00056521 830900 229.16 830900 229.16 504.962915440315 30.113 0.57041 30.113 29.895 30.465 0 56 18 4 0.91216891946798 0.0118094515230717 0.250320247446284 0.0012141 1 6724 106.62 65.455 2 64787000 95770 54530 97328 50799 49537 101290 54355 69753 56722 3122.4 90628 51491 97338 53198 53162 98884 55162 71283 55867 4554.5 1 1 1 1 1 1 1 1 1 1 318 178 276 297 355 355 309 AKSPTPDGSER 11 Phospho (STY) _AKS(ph)PTPDGSER_ AKS(0.936)PT(0.064)PDGSER AKS(11.67)PT(-11.67)PDGS(-53.77)ER 0 0 1 1 Q96MU7 Q96MU7 Q96MU7 YTHDC1 YTH domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.623046875 3 408.846725 1223.51835 40840.3670236328 1.8824 0.00076961 373670 152.78 373680 152.78 561.622415207542 27.725 0.59904 27.725 27.552 28.151 3.5527E-15 43 20 4 0.952424148369921 0.00305027257895949 0.0289114285340124 9.701E-05 1 6165 117.97 91.614 3 22883000 9931.5 11017 10270 11002 11346 10896 11482 13630 12569 2440.3 9399 10407 10335 11296 11454 10966 11711 13639 12356 2613.3 1 1 1 1 1 1 1 1 1 1 319 1716 277 298 356 356 3158 AKSPTPESSTIASYVTLR 18 Phospho (STY) _AKS(ph)PTPESSTIASYVTLR_ AKS(0.836)PT(0.157)PES(0.007)S(0.001)TIASYVTLR AKS(7.26)PT(-7.26)PES(-20.91)S(-31.86)T(-59.41)IAS(-91.18)Y(-151.04)VT(-131.73)LR 0 0 1 1 Q9HAU0 Q9HAU0 Q9HAU0 PLEKHA5 Pleckstrin homology domain-containing family A member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 816.440002441406 3 663.329389 1986.96634 34500.5760015275 2.1281 0.0014116 230320 152.77 230320 152.78 816.439031193368 78.317 0.65644 78.317 77.951 78.607 1.4211E-14 84 22 5 0.962564388226325 0.00892294727635705 0.137087134047002 2.636E-16 1 18336 238.2 206.16 8 50920000 23475 34776 24089 34860 15334 25325 18585 28045 38170 18897 22216 32853 24120 35635 16142 25880 19298 28596 36831 18443 1 1 1 1 1 1 1 1 1 1 320 1972 278 299 357 357 3588 AKSQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLR 36 Phospho (STY) _AKS(ph)QEEVLPSSTTPSPGGALSPSGQPSSSATEVVLR_ AKS(0.998)QEEVLPS(0.002)STTPSPGGALSPSGQPSSSATEVVLR AKS(27.33)QEEVLPS(-27.33)S(-37.44)T(-44.32)T(-49.84)PS(-78.99)PGGALS(-159.44)PS(-181.19)GQPS(-203.31)S(-206.83)S(-210.04)AT(-214.81)EVVLR 0 0 1 1 Q9UBW5 Q9UBW5 Q9UBW5 BIN2 Bridging integrator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1020.53033447266 4 905.443821 3617.74618 31002.4287968368 1.7196 0.001557 126550 114.58 126550 114.58 1020.27696305143 74.562 0.55938 74.562 74.33 74.889 0 87 18 6 0.98554961542129 0.00575434258007177 0.0606229136662569 3.7615E-18 2 17495 221.21 198.72 12 34274000 5158.5 3730.4 6381.4 4288.8 12011 6419.8 13499 8567 5519.2 37505 4885.8 3527.2 6427.1 4403.8 11870 6437.4 13451 9640.2 5784.3 35514 2 2 2 2 2 2 2 2 2 2 321 2131 279 300 358;359 358 3830 AKTPVTLK 8 Phospho (STY) _AKT(ph)PVTLK_ AKT(0.919)PVT(0.081)LK AKT(10.56)PVT(-10.56)LK 0 0 1 1 P42167 P42167 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.338806152344 3 313.175454 936.504534 42254.6465919806 0.68094 0.00021325 731740 229.16 731740 229.16 542.338559850309 53.128 1.305 53.128 52.755 54.06 0 124 45 5 0.993990209823338 0.0204525613463321 0.0874714623803622 0.010166 1 12382 92.19 69.504 2 660490000 363790 264650 360900 258720 148970 352280 165940 267330 268010 11060 344220 249980 361010 267510 164030 347890 170890 271780 260120 16601 1 1 1 1 1 1 1 1 1 1 322 582 280 301 360 360 4461 AKTQTPPVSPAPQPTEER 18 2 Phospho (STY) _AKT(ph)QTPPVS(ph)PAPQPTEER_ AKT(0.635)QT(0.365)PPVS(0.998)PAPQPT(0.002)EER AKT(2.41)QT(-2.41)PPVS(27.63)PAPQPT(-27.63)EER 0 0 2 1 Q14247 Q14247 Q14247 CTTN Src substrate cortactin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.423645019531 3 698.648332 2092.92317 34165.2210425099 1.4515 0.0010141 218670 152.78 218670 152.78 851.758276278205 40.894 0.96983 40.894 40.599 41.569 0 104 33 4 0.977936046430913 0.00202403010188514 0.0101773211386334 8.9218E-05 1 9313 120.75 112.15 6 40494000 10324 25704 10761 25069 6449.9 10658 5596.9 16591 29308 5488.8 9771.2 24278 10756 25547 6810.3 11411 6387.5 16577 27912 5552.3 1 1 1 1 1 1 1 1 1 1 323 1004 281 302 361 361 1703;4556;4557 ALAAGADSPKTEEARPSPAPGPGTPTGTPTR 31 Phospho (STY) _ALAAGADS(ph)PKTEEARPSPAPGPGTPTGTPTR_ ALAAGADS(0.743)PKT(0.257)EEARPSPAPGPGTPTGTPTR ALAAGADS(4.62)PKT(-4.62)EEARPS(-50.88)PAPGPGT(-83.2)PT(-94.9)GT(-98.91)PT(-107.26)R 0 0 1 2 Q4KMP7 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.455871582031 4 760.369928 3037.45061 34431.9296182442 0.97328 0.00074005 150690 114.58 150700 114.58 875.455560017755 48.222 0.35181 48.222 48.094 48.446 -7.1054E-15 37 11 4 0.930575249149396 0.00138014446195917 0.0180279086057098 1.3721E-07 1 11197 141.16 100.91 7 13305000 14637 11487 14520 12427 12128 14553 12607 13678 12919 6313.3 13850 10857 14599 12736 12456 14494 12818 13945 12734 6261.3 1 1 1 1 1 1 1 1 1 1 324 1139 282 303 362 362 1983;4594 ALAAGGYDVEK 11 Unmodified _ALAAGGYDVEK_ 0 0 0 0 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.442321777344 2 547.279846 1092.54514 36367.9453350143 1.5288 0.00083669 418730 229.16 418730 229.16 776.442096291383 60.642 0.34681 60.642 60.429 60.776 0 18 11 2 0.448210296522784 0.000270631035968933 0.00877353613776894 2.7921E-06 1 14230 152.97 112.54 1 8253000 25282 13114 25304 14171 17731 27275 17169 19913 13294 30357 23923 12394 25385 14696 18429 26719 17398 21174 13281 29046 1 1 1 1 1 1 1 1 1 1 325 407 283 304 363 363 ALAMPGRPESPPVFR 15 Phospho (STY) _ALAMPGRPES(ph)PPVFR_ ALAMPGRPES(1)PPVFR ALAMPGRPES(46.36)PPVFR 0 0 1 1 Q63ZY3 Q63ZY3 Q63ZY3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.670288085938 3 568.947897 1703.82186 39280.9757717624 2.0903 0.0011893 134260 76.387 134260 76.388 645.335118108314 73.94 0.91563 73.94 73.473 74.388 0 116 31 5 0.919510085407827 0.00279653230397184 0.0575782421359859 0.040369 1 17307 46.356 28.867 1 48120000 12137 6108.5 13423 7129.1 12559 13795 13222 10954 8055.4 7917.5 11490 5776.3 13433 7364.7 12801 13509 13285 11336 8167.4 7708.8 1 1 1 1 1 1 1 1 1 1 326 1219 284 305 364 364 2146 ALDGPEQMELEEGK 14 Acetyl (Protein N-term) _(ac)ALDGPEQMELEEGK_ 1 0 0 0 P62195 P62195 P62195 PSMC5 26S protease regulatory subunit 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 908.945434570313 2 794.363978 1586.7134 32353.5856332569 1.9115 0.0015184 144240 114.58 144240 114.58 908.941864909162 77.959 0.63142 77.959 77.603 78.234 1.4211E-14 69 21 5 0.707095138347757 0.0029384836203147 0.0406383533115264 7.1127E-16 1 18271 195.27 152.87 1 31626000 13656 15934 13210 15585 12583 14595 14488 16062 18281 66983 12920 15051 13323 16007 12836 14818 14760 18073 17877 63444 1 1 1 1 1 1 1 1 1 1 327 756 285 306 365 365 ALEEELEDLELGL 13 Unmodified _ALEEELEDLELGL_ 0 0 0 0 Q9BRP8 Q9BRP8 Q9BRP8 WIBG Partner of Y14 and mago MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.45458984375 2 736.871962 1471.72937 34685.9999915615 1.4863 0.0010952 155500 114.58 155500 114.58 851.453420442999 103.05 0.09053 103.05 103 103.09 0 4 2 2 0.53415037478064 0.000197729738409713 0.00439046663512917 0.027875 1 24299 86.67 48.649 1 9435400 3419.7 4011.3 3798.4 3640.6 4828.9 3955.6 3121.8 4285 3696.4 37191 3237.3 3787.3 3812.4 3765.8 4815.9 4025 3275.5 5406 3622.9 35119 1 1 1 1 1 1 1 1 1 1 328 1813 286 307 366 366 ALEEGDGSVSGSSPR 15 Phospho (STY) _ALEEGDGSVSGSS(ph)PR_ ALEEGDGSVSGSS(1)PR ALEEGDGS(-107.03)VS(-76.83)GS(-37.16)S(37.16)PR 0 0 1 0 Q8N3X1 Q8N3X1 Q8N3X1 FNBP4 Formin-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 878.902770996094 2 764.319774 1526.625 33751.8430108793 1.9427 0.0014848 149910 114.58 149920 114.58 878.901166265893 41.349 0.51525 41.349 41.082 41.597 0 61 17 4 0.841711146684522 0.000992813873578174 0.0246808277377179 1.9723E-16 1 9408 246.52 213.95 4 31539000 21102 17533 22097 15426 21373 20893 21690 20286 18143 4065.5 19972 16551 22184 16055 21734 20698 21966 20494 18052 4297.7 1 1 1 1 1 1 1 1 1 1 329 1464 287 308 367 367 2710 ALELPLAASSIPRPRTPSPESHR 23 2 Phospho (STY) _ALELPLAASSIPRPRT(ph)PS(ph)PESHR_ ALELPLAASS(0.006)IPRPRT(0.994)PS(0.991)PES(0.009)HR ALELPLAAS(-47.85)S(-22.4)IPRPRT(22.4)PS(20.54)PES(-20.54)HR 0 0 2 2 Q66K74 Q66K74 Q66K74 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.869445800781 4 661.326743 2641.27787 37236.8361548565 1.6215 0.0010723 86631 57.291 86632 57.292 718.868533908303 80.902 1.7953 80.902 80.434 82.23 0 192 61 5 0.88487936136431 0.00267999663775978 0.025565283199091 1.1756E-17 1 18903 220.67 194.54 10 24536000 4700.6 4065.2 5091.1 5009.8 4473.3 4141.9 3625.5 5021.2 5836 7684.9 4449.4 3845.6 5094.8 5072.3 4566.1 4215.9 3791.7 5234.1 5664.6 7352.4 1 1 1 1 1 1 1 1 1 1 330 1224 288 309 368 368 2156;4615 ALENGDADEPSFSDPEDFVDDVSEEELLGDVLK 33 Phospho (STY) _ALENGDADEPSFS(ph)DPEDFVDDVSEEELLGDVLK_ ALENGDADEPS(0.029)FS(0.971)DPEDFVDDVSEEELLGDVLK ALENGDADEPS(-15.18)FS(15.18)DPEDFVDDVS(-56.5)EEELLGDVLK 0 0 1 0 P55884 P55884 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1034.97900390625 4 919.646286 3674.55604 30815.1846820543 1.1048 0.0010161 124590 114.58 124590 114.58 1034.72837161316 102.53 0.64016 102.53 102.25 102.89 0 76 21 6 0.786840383517302 0.00253357102727188 0.0312232003355673 1.7873E-05 2 24131 124.76 113.66 3 65050000 9214.3 7964.2 8529.5 8515 7792.7 9311.9 8194.4 16443 9651.5 219240 8716.5 7526.7 8619.8 8722.2 7958.6 9800.5 8361.8 22824 9461.3 206830 2 2 2 2 2 2 2 2 2 2 331 725 289 310 369;370 369 1206 ALESPERPFLAILGGAK 17 Phospho (STY) _ALES(ph)PERPFLAILGGAK_ ALES(1)PERPFLAILGGAK ALES(218.69)PERPFLAILGGAK 0 0 1 1 P00558 P00558 P00558 PGK1 Phosphoglycerate kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.102600097656 3 616.99216 1847.95465 36167.263583779 1.966 0.001213 247610 152.78 247610 152.78 770.101406959118 100.77 0.30949 100.77 100.65 100.95 0 30 10 5 0.861681471394817 0.0138047281629044 0.14808266197338 7.4825E-16 1 23595 218.69 190.61 1 162730000 69889 89375 68112 89885 112020 72281 113030 92937 97101 34330 66126 84432 69226 91977 111080 73560 114570 93457 96485 34477 1 1 1 1 1 1 1 1 1 1 332 282 290 311 371 371 466 ALGPGSSK 8 Phospho (STY) _ALGPGS(ph)SK_ ALGPGS(0.5)S(0.5)K ALGPGS(0)S(0)K 0 0 1 0 Q9UMZ2 Q9UMZ2 Q9UMZ2 SYNRG Synergin gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.847839355469 2 398.683668 795.352784 40114.7340213528 2.7808 0.0011087 574800 229.16 574800 229.16 627.846641132967 46.201 0.50296 46.201 45.933 46.436 7.1054E-15 37 16 3 0.804804917440992 0.00096375748340551 0.0432074432852531 0.0014921 1 10657 103.42 54.996 2 12379000 20405 17753 20743 18713 11714 21170 11248 17412 20149 4621.7 19309 16776 20756 19195 12422 21072 11715 17750 19503 4754.9 1 1 1 1 1 1 1 1 1 1 333 2200 291 312 372 372 3982;3983 ALGSPTK 7 Phospho (STY) _ALGS(ph)PTK_ ALGS(0.845)PT(0.155)K ALGS(7.38)PT(-7.38)K 0 0 1 0 Q9NR45 Q9NR45 Q9NR45 NANS Sialic acid synthase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.344970703125 2 377.180762 752.34697 39881.2530106703 2.736 0.001032 607570 229.16 607570 229.16 606.343736855967 46.011 0.76253 46.011 45.673 46.436 0 89 25 5 0.828894978840594 0.00336880507877761 0.0673191389240614 0.0071808 1 10570 93.111 35.151 2 126230000 36644 49907 38725 48770 29591 31665 31474 39812 47711 3441.4 34683 47139 38766 49870 30610 32611 32392 39722 46388 4161.9 1 1 1 1 1 1 1 1 1 1 334 2013 292 313 373 373 3657 ALGTPNNEVWPEVESLQDYK 20 Unmodified _ALGTPNNEVWPEVESLQDYK_ 0 0 0 0 P06493 P06493 P06493 CDK1 Cyclin-dependent kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 916.817810058594 3 763.705974 2288.09609 33318.2273850281 1.8354 0.0014017 200050 152.78 200050 152.78 916.816118868044 98.036 1.0449 98.036 97.414 98.459 0 79 35 3 0.973148962468672 0.00354717723047137 0.129176638325722 3.8305E-05 2 22770 120.4 102.04 1 8752700 9951.2 13074 10516 11398 8319.3 9861.2 9173.9 11966 13199 49178 9418.5 12341 10532 11780 8588.1 10072 9407.4 13403 12852 46584 2 2 2 2 2 2 2 2 2 2 335 312 293 314 374;375 375 ALIQTCLNSPDSPPR 15 Phospho (STY) _ALIQTCLNSPDS(ph)PPR_ ALIQTCLNSPDS(1)PPR ALIQT(-96.91)CLNS(-34.98)PDS(34.98)PPR 0 0 1 0 P11831 P11831 P11831 SRF Serum response factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.993896484375 3 583.606088 1747.79643 39294.1630025295 1.8623 0.0010868 130890 76.386 130890 76.387 659.991950987 71.038 0.60234 71.038 70.739 71.342 0 55 20 4 0.979407553233449 0.00204578854013487 0.0138842847917744 2.2022E-05 1 16666 133.92 119.71 3 13947000 8570.8 8955.9 8658.6 7628.1 6504.6 8224.1 7417.9 7473.5 7781.5 4996.5 8110.5 8452.8 8689 7922.9 6741.4 8216.9 7516.9 7676.1 7662.6 4877.8 1 1 1 1 1 1 1 1 1 1 336 366 294 315 376 376 599 ALIRSPSLAK 10 Phospho (STY) _ALIRS(ph)PSLAK_ ALIRS(0.919)PS(0.081)LAK ALIRS(10.58)PS(-10.58)LAK 0 0 1 1 Q5SW96 Q5SW96 Q5SW96 LDLRAP1 Low density lipoprotein receptor adapter protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.988952636719 3 379.21268 1134.61621 43205.1281914804 0.7386 0.00028009 402880 152.78 402880 152.78 531.988258305749 62.362 0.46405 62.362 62.122 62.586 0 43 15 4 0.906481997440004 0.00237248553710403 0.0759389697480599 0.0046512 1 14628 86.803 38.163 2 22259000 10287 15978 10170 13778 7487.4 11102 7787.7 10394 16144 1996.2 9733.6 15081 10215 14238 7768.7 11242 8141.6 10513 15575 2120.2 1 1 1 1 1 1 1 1 1 1 337 1181 295 316 377 377 2054 ALLLLCGEDD 10 Unmodified _ALLLLCGEDD_ 0 0 0 0 P08758 P08758 P08758 ANXA5 Annexin A5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.35498046875 2 559.773539 1117.53253 38057.2610708657 2.2066 0.0012352 204690 114.58 204690 114.58 674.354163055715 100.32 0.19496 100.32 100.2 100.39 0 17 6 4 0.912899858556792 0.00455569069211464 0.132439785050541 1.1414E-05 1 23427 143 136.33 1 64319000 12521 9703.5 12805 9346.4 9727.7 14101 9712.2 10806 10427 21869 11849 9164.5 12840 9694.8 10054 13922 9906.5 11626 10258 20843 1 1 1 1 1 1 1 1 1 1 338 338 296 317 378 378 ALLLQGPSQSSSEA 14 Phospho (STY) _ALLLQGPSQSSS(ph)EA_ ALLLQGPSQS(0.006)S(0.159)S(0.835)EA ALLLQGPS(-38.51)QS(-21.7)S(-7.2)S(7.2)EA 0 0 1 0 P49795 P49795 P49795 RGS19 Regulator of G-protein signaling 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.423156738281 2 734.339978 1466.6654 34382.3094932797 1.6254 0.0011936 156030 114.58 156030 114.58 849.42247262178 83.379 0.61411 83.379 83.028 83.643 1.4211E-14 48 20 3 0.864837510132075 0.00137039175114681 0.0343548564119209 0.021774 1 19487 65.295 46.68 4 10215000 7155.1 6703.8 6666.8 6563.8 6815.9 6808.6 8864.8 8275.1 7024.5 33795 6768.7 6332 6746.9 6752 6935.3 6895.7 8874.8 9262 7009.2 32014 1 1 1 1 1 1 1 1 1 1 339 656 297 318 379 379 1107 ALLNLPGTQTSGEAK 15 Phospho (STY) _ALLNLPGTQTS(ph)GEAK_ ALLNLPGT(0.001)QT(0.088)S(0.91)GEAK ALLNLPGT(-28.31)QT(-10.13)S(10.13)GEAK 0 0 1 0 Q96GM8 Q96GM8 Q96GM8 TOE1 Target of EGR1 protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.038635253906 3 527.262427 1578.76545 37440.333981774 1.4691 0.00077459 289750 152.77 289750 152.77 680.368712142641 85.249 0.60865 85.249 84.953 85.562 0 36 20 2 0.924221003880252 0.00412609109529633 0.0738693935432352 7.1988E-05 1 19884 122.69 101.74 3 20386000 4033.1 8160.7 5645.5 9316.8 6589 4719.4 7352.7 6780.7 9431.7 5918.3 3822.4 7715.7 5605 9421.8 6643.6 4972.7 7504.7 6900 9218.1 5729.7 1 1 1 1 1 1 1 1 1 1 340 1684 298 319 380 380 3099 ALLSLRSPK 9 Phospho (STY) _ALLSLRS(ph)PK_ ALLSLRS(1)PK ALLS(-38.86)LRS(38.86)PK 0 0 1 1 Q9UNF1 Q9UNF1 Q9UNF1 MAGED2 Melanoma-associated antigen D2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 508.309020996094 3 355.533642 1063.5791 43538.7703121314 1.0777 0.00038317 429710 152.78 429710 152.78 508.308802785117 69.624 0.98089 69.624 69.234 70.215 1.4211E-14 98 33 4 0.75008163631614 0.00531343925766448 0.0809842838237849 0.0068962 1 16300 79.311 34.713 2 35068000 5787.9 16370 5912.1 15803 12822 5982.7 13218 11913 17315 1234.9 5477.3 15461 6031.4 16103 12613 6511.7 13548 11757 16911 1438.5 1 1 1 1 1 1 1 1 1 1 341 2205 299 320 381 381 3992 ALLYLCGGDD 10 Unmodified _ALLYLCGGDD_ 0 0 0 0 P07355;A6NMY6 P07355 P07355 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.334228515625 2 548.752607 1095.49066 40162.1004265852 1.6003 0.00087817 208800 114.58 208800 114.58 663.334101978642 91.173 0.51547 91.173 90.936 91.452 0 34 17 3 0.73373984212788 0.000392375712725667 0.00619583468326947 0.00018755 1 21224 134.12 117.2 1 12324000 5906.2 9222.5 4740.4 8299.6 6781.9 6256.2 6991.5 7284.8 8964 14328 5584.4 8706.9 4865.7 8545.3 6766.6 6402 7160.7 7699.1 8761.1 13660 1 1 1 1 1 1 1 1 1 1 342 318 300 321 382 382 ALPLSPR 7 Phospho (STY) _ALPLS(ph)PR_ ALPLS(1)PR ALPLS(61.68)PR 0 0 1 0 Q99741 Q99741 Q99741 CDC6 Cell division control protein 6 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.7998046875 2 417.217678 832.420804 42952.2176607573 1.0419 0.00043471 274630 114.58 274630 114.58 531.79903217825 60.917 0.75802 60.917 60.489 61.247 0 61 25 3 0.940353012732266 0.00165507545309114 0.0455886737993667 0.028858 1 14237 61.679 6.3089 1 25695000 8479 12889 10021 14359 7121.6 11146 6702.5 10837 15771 2395.5 8029 12184 9965.9 14602 7400.9 11316 7091 10955 15176 2506.4 1 1 1 1 1 1 1 1 1 1 343 1789 301 322 383 383 3298 ALPPLPRPPTPK 12 Phospho (STY) _ALPPLPRPPT(ph)PK_ ALPPLPRPPT(1)PK ALPPLPRPPT(122.16)PK 0 0 1 1 Q8N6T7 Q8N6T7 Q8N6T7 SIRT6 NAD-dependent protein deacetylase sirtuin-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.030334472656 3 455.254767 1362.74247 39562.3354886121 1.7887 0.00081432 335580 152.78 335580 152.78 608.030111681725 75.499 1.5551 75.499 74.54 76.095 -1.4211E-14 194 53 5 0.981746750362377 0.00430987818781951 0.0425294304764203 0.00017357 1 17780 122.16 86.713 1 73274000 16219 13249 16378 11079 11675 16095 11375 11605 13210 2457.3 15348 12504 16424 11589 12123 15857 11643 11888 12957 2582.4 1 1 1 1 1 1 1 1 1 1 344 1482 302 323 384 384 4684 ALPQTPRPR 9 Phospho (STY) _ALPQT(ph)PRPR_ ALPQT(1)PRPR ALPQT(117.98)PRPR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 448.916748046875 3 372.528891 1114.56484 46427.5933883761 0.80978 0.00030167 205050 76.387 205050 76.388 448.91641182843 36.191 0.81017 36.191 35.85 36.66 0 101 27 5 0.961894262313319 0.0143741982672171 0.171297314225981 0.00059071 1 8118 117.98 67.768 1 479850000 59041 52144 59277 51894 25823 52140 25182 42408 54017 1225.7 55869 49257 59264 53302 28198 52132 26454 42952 52076 2135.6 1 1 1 1 1 1 1 1 1 1 345 2226 303 324 385 385 4818 ALPSLNTGSSSPR 13 Phospho (STY) _ALPSLNTGSSS(ph)PR_ ALPSLNTGSSS(1)PR ALPS(-159.8)LNT(-101.14)GS(-61.9)S(-35.2)S(35.2)PR 0 0 1 0 O14545 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.403991699219 2 683.821756 1365.62896 34780.1350829798 1.6896 0.0011554 167560 114.58 167560 114.58 798.403634434039 61.699 0.96257 61.699 61.302 62.265 0 128 32 6 0.990269160658126 0.00239841813411113 0.0992409168590105 5.8317E-16 1 14417 234.09 205.02 5 567700000 19794 30822 20906 31009 16457 18802 15067 23422 32582 16949 18734 29117 20930 31631 16961 19481 15884 23825 31406 16501 1 1 1 1 1 1 1 1 1 1 346 59 304 325 386 386 96 ALQASALK 8 Phospho (STY) _ALQAS(ph)ALK_ ALQAS(1)ALK ALQAS(84.69)ALK 0 0 1 0 P04075 P04075 P04075 ALDOA Fructose-bisphosphate aldolase A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.392272949219 2 441.228243 880.441933 38714.5960975513 2.831 0.0012491 519370 229.16 519380 229.16 670.391212670835 63.899 0.60014 63.899 63.52 64.12 7.1054E-15 39 20 3 0.709971196250677 0.000789113947585168 0.019934373721196 0.010744 1 14988 84.687 13.466 1 15396000 14085 17466 13965 17128 21069 12537 20501 15103 15931 10267 13328 16497 14155 17533 20949 12823 20771 15359 15913 10017 1 1 1 1 1 1 1 1 1 1 347 289 305 326 387 387 481 ALQLILDVLNPETSEDENDR 20 Unmodified _ALQLILDVLNPETSEDENDR_ 0 0 0 0 Q9BQG0 Q9BQG0 Q9BQG0 MYBBP1A Myb-binding protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.104675292969 3 762.048288 2283.12303 35100.5562689304 1.5944 0.001215 100240 76.388 100240 76.389 838.771400693966 103.33 0.14184 103.33 103.26 103.41 0 9 4 3 1 0.000222231581871273 0.0100275088053858 0.045056 1 24359 47.392 30.314 1 5711500 2091.3 2648.2 2358.1 2228.8 1927.6 2457.3 2517.9 2863.8 3010.3 17614 1979.9 2499.3 2355 2317.7 1990.4 2491.2 2548.1 3387.5 2949.3 16652 1 1 1 1 1 1 1 1 1 1 348 1807 306 327 388 388 ALQTSPQPPEGPGLPR 16 Phospho (STY) _ALQT(ph)SPQPPEGPGLPR_ ALQT(0.5)S(0.5)PQPPEGPGLPR ALQT(0)S(0)PQPPEGPGLPR 0 0 1 0 Q6PFW1 Q6PFW1 Q6PFW1 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.34130859375 3 575.617093 1723.82945 38466.5732868586 1.6133 0.00092864 132710 76.388 132710 76.389 652.339513925452 61.991 0.78469 61.991 61.535 62.319 7.1054E-15 74 26 4 0.70164962025597 0.00197174578834731 0.0401438807488131 0.0545 1 14577 50.425 39.163 2 15943000 10589 7986.6 8652.3 9835 8858.6 9888 8215 8248.8 8882.9 5806.1 10012 7555.2 8825 9986.3 8969.1 9899.2 8411.4 8512.7 8736.5 5658 1 1 1 1 1 1 1 1 1 1 349 1266 307 328 389 389 2243;4626 ALRASESGI 9 Phospho (STY) _ALRAS(ph)ESGI_ ALRAS(0.95)ES(0.05)GI ALRAS(12.78)ES(-12.78)GI 0 0 1 1 P48960 P48960 P48960 CD97 CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.8134765625 2 492.231514 982.448475 39393.5736741048 0.95773 0.00047142 232780 114.58 232780 114.58 606.813215730984 55.704 0.6184 55.704 55.449 56.067 0 61 20 4 0.994683551210421 0.00650301690948466 0.123509910406343 6.1308E-06 1 12980 147.62 122.24 2 143390000 61151 9784.1 59614 10791 8569.8 63924 13596 24731 12751 4750.7 57859 9248.4 59501 11873 11781 61220 13575 26469 12617 5045.7 1 1 1 1 1 1 1 1 1 1 350 630 308 329 390 390 1041 ALSAAVADSLTNSPR 15 Phospho (STY) _ALSAAVADSLTNS(ph)PR_ ALSAAVADSLT(0.001)NS(0.999)PR ALS(-169.13)AAVADS(-76.64)LT(-32.52)NS(32.52)PR 0 0 1 0 Q14687 Q14687 Q14687 GSE1 Genetic suppressor element 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.640563964844 3 518.25041 1551.7294 40602.8982617101 1.4155 0.0007336 147390 76.387 147400 76.388 594.972244346099 73.111 0.92258 73.111 72.693 73.616 1.4211E-14 102 31 5 0.822710117955919 0.00214260232247733 0.043143193959957 8.1721E-11 1 17116 197.67 173.39 4 44645000 5158.3 6225.4 5036.2 6035.5 6418.8 5520.2 6523.8 5823.7 6799.8 3546.4 4880.6 5879.8 5095.3 6200.4 6433.9 5566.6 6643.2 5936.7 6697.7 3474.2 1 1 1 1 1 1 1 1 1 1 351 1022 309 330 391 391 1743 ALSEEKDEEDGENAHPYR 18 Phospho (STY) _ALS(ph)EEKDEEDGENAHPYR_ ALS(1)EEKDEEDGENAHPYR ALS(120.99)EEKDEEDGENAHPY(-120.99)R 0 0 1 1 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.739685058594 3 723.630455 2167.86954 33598.7909975301 1.783 0.0012903 211120 152.77 211120 152.78 876.739975766091 43.94 1.2498 43.94 43.639 44.889 0 116 42 5 0.985107185055814 0.00385668498145143 0.0264553460963366 7.0892E-16 1 10038 217.09 181.12 2 239900000 16261 36981 18672 32969 59389 18071 72442 39554 40464 5755.5 15396 34911 19186 33857 58018 19058 72237 39016 41282 6334.9 1 1 1 1 1 1 1 1 1 1 352 2028 310 331 392 392 3683 ALSHQEPMVSTQPAPR 16 Phospho (STY) _ALS(ph)HQEPMVSTQPAPR_ ALS(1)HQEPMVSTQPAPR ALS(107.64)HQEPMVS(-107.64)T(-116.94)QPAPR 0 0 1 0 Q86YV0 Q86YV0 Q86YV0 RASAL3 RAS protein activator like-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.008483886719 3 610.285237 1827.83388 36964.4826951122 1.1197 0.00068331 125170 76.388 125170 76.389 686.673231471476 47.04 0.46638 47.04 46.771 47.237 0 68 15 6 0.996540115445719 0.0100260515513791 0.0520041662402754 1.8859E-11 1 10846 208.87 192.56 3 139020000 19138 9539.3 18632 8914.1 19091 18801 22796 16580 10196 9237.5 18108 9007.9 18803 9349.8 19387 18394 22681 16995 10595 9082 1 1 1 1 1 1 1 1 1 1 353 1404 311 332 393 393 2549 ALSLEENGVGSNFK 14 Phospho (STY) _ALS(ph)LEENGVGSNFK_ ALS(1)LEENGVGSNFK ALS(102.67)LEENGVGS(-102.67)NFK 0 0 1 0 Q8NF50 Q8NF50 Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.680908203125 3 515.571261 1543.69195 37518.1275395638 1.6332 0.00084205 296320 152.77 296320 152.77 668.67886824522 80.066 0.67351 80.066 79.789 80.463 0 89 22 5 0.98818888273689 0.00913472447639428 0.0878965685991293 7.2363E-07 1 18727 145.46 126.67 2 113180000 29517 5378.8 30055 4905.5 22636 27079 20947 18172 7187.5 6363.8 27933 5078.5 30139 5422 23372 26053 21026 18765 7675.5 6412.9 1 1 1 1 1 1 1 1 1 1 354 1520 312 333 394 394 2790 ALSLEENGVGSNFK 14 Phospho (STY) _ALS(ph)LEENGVGSNFK_ ALS(0.988)LEENGVGS(0.012)NFK ALS(19.08)LEENGVGS(-19.08)NFK 0 0 1 0 Q8NF50 Q8NF50 Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1002.51696777344 2 772.853253 1543.69195 30435.8963306969 1.4451 0.0011169 296510 229.16 296510 229.16 1002.51426592911 80.046 0.55651 80.046 79.818 80.374 -1.4211E-14 60 18 4 0.931596182224017 0.000720986052365499 0.00983170978256311 0.011889 1 18796 81.904 59.183 2 48812000 17126 5151.9 17270 5397.5 15072 18314 15045 14155 6360.7 19398 16207 4868.3 17355 5734.5 15416 17765 15078 14944 6644.4 18593 1 1 1 1 1 1 1 1 1 1 355 1520 312 333 395 395 2790 ALSLGTIPSLTR 12 Phospho (STY) _ALS(ph)LGTIPSLTR_ ALS(0.522)LGT(0.467)IPS(0.011)LTR ALS(0.48)LGT(-0.48)IPS(-16.9)LT(-57.97)R 0 0 1 0 Q5SNT2 Q5SNT2 Q5SNT2 TMEM201 Transmembrane protein 201 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.431640625 2 654.849785 1307.68502 36105.6784973907 1.7327 0.0011347 174970 114.58 174970 114.58 769.430846877164 95.363 0.79846 95.363 95.081 95.879 0 80 27 4 0.870399962807544 0.00106478959838209 0.0182348113052808 5.5851E-07 1 22162 145 97.44 4 74800000 20488 13825 20007 11908 10195 19961 12241 15736 12331 42682 19385 13049 20058 12473 10955 19676 12364 17234 12163 40554 1 1 1 1 1 1 1 1 1 1 356 1177 313 334 396 396 2038 ALSLGTIPSLTR 12 Phospho (STY) _ALS(ph)LGTIPSLTR_ ALS(0.996)LGT(0.004)IPSLTR ALS(24.51)LGT(-24.51)IPS(-73.04)LT(-74.47)R 0 0 1 0 Q5SNT2 Q5SNT2 Q5SNT2 TMEM201 Transmembrane protein 201 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.289611816406 3 436.902282 1307.68502 45448.5674526994 0.81454 0.00035587 174840 76.387 174840 76.388 513.28946784527 95.385 0.39291 95.385 95.258 95.651 0 20 13 2 0.785021875888515 0.000654629684475452 0.00823778994617424 0.0063074 1 22188 82.578 55.48 4 7640800 1206.7 540.74 1734 1913.1 525.68 1398.6 1595.1 1830.7 1959.6 1605 1143.9 518.63 1702.9 1872.3 620.27 1433.3 1582.3 1868 1918.1 1553.7 1 1 1 1 1 1 1 1 1 1 357 1177 313 334 397 397 2038 ALSPAELR 8 Phospho (STY) _ALS(ph)PAELR_ ALS(1)PAELR ALS(49.16)PAELR 0 0 1 0 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.815063476563 2 468.73115 935.447747 40975.793700738 1.1353 0.00053216 244450 114.58 244450 114.58 583.312286728165 60.625 0.69879 60.625 60.194 60.893 0 62 23 4 0.989534352429255 0.00132015199371637 0.0897561968484475 0.053017 1 14175 49.16 17.857 1 24330000 13095 8680.3 14975 10713 9245.2 13647 7950.8 11399 10928 5139.8 12398 8211.5 14898 10922 9704.9 13529 8236.9 11676 10657 5103.5 1 1 1 1 1 1 1 1 1 1 358 994 314 335 398 398 1687 ALSPGLEESGLGLLAR 16 Phospho (STY) _ALS(ph)PGLEESGLGLLAR_ ALS(1)PGLEESGLGLLAR ALS(111.85)PGLEES(-111.85)GLGLLAR 0 0 1 0 O15417 O15417 O15417 TNRC18 Trinucleotide repeat-containing gene 18 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.341796875 3 554.953594 1661.83895 38886.1499725859 1.9951 0.0011072 137650 76.387 137650 76.389 631.675420170848 100.17 0.17094 100.17 100.09 100.26 0 12 5 3 0.956536094960053 0.00274195753687977 0.0709449497775913 5.7561E-16 1 23381 228.46 197.92 2 24607000 5882.3 5034.7 5029.5 5612.9 6252 5697.6 4445.6 4704.2 5436.5 14980 5563 4759.4 5125 5729.2 6247.8 5723 4639.2 5208.5 5322.2 14214 1 1 1 1 1 1 1 1 1 1 359 92 315 336 399 399 159 ALSPLSPVAIEQTSLK 16 Phospho (STY) _ALSPLS(ph)PVAIEQTSLK_ ALS(0.335)PLS(0.665)PVAIEQTSLK ALS(-2.98)PLS(2.98)PVAIEQT(-173.08)S(-202.82)LK 0 0 1 0 Q96K83 Q96K83 Q96K83 ZNF521 Zinc finger protein 521 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.417419433594 3 578.641016 1732.90122 36616.3889631458 1.9039 0.0011017 264020 152.77 264030 152.78 731.416171476818 97.868 0.69474 97.868 97.531 98.226 0 100 23 6 0.888856492649865 0.0029599150369637 0.0308073271718253 3.8689E-23 1 22693 276.8 248.66 4 56881000 9024.2 2865.1 9436.2 2832.7 8312.3 9130.1 10152 7178.8 2582.1 11122 8540.7 2706.3 9467.7 3011.7 8520.5 8866.9 10038 7611.6 2868.8 10639 1 1 1 1 1 1 1 1 1 1 360 1707 316 337 400 400 3144 ALSPVIPLIPR 11 Phospho (STY) _ALS(ph)PVIPLIPR_ ALS(1)PVIPLIPR ALS(189.43)PVIPLIPR 0 0 1 0 O14686 O14686 O14686 KMT2D Histone-lysine N-methyltransferase 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.945068359375 2 628.362331 1254.71011 36597.7952228249 1.8198 0.0011435 182350 114.58 182350 114.58 742.943903525639 100.83 0.28332 100.83 100.7 100.98 0 32 9 5 0.986012559249493 0.0372771140349882 1 4.1739E-10 1 23624 189.43 118.62 1 506100000 143630 215500 144340 202030 215750 135890 238120 205220 207410 34883 135910 203500 146220 207200 215010 140090 240470 204210 205950 37596 1 1 1 1 1 1 1 1 1 1 361 63 317 338 401 401 102 ALSPVTSR 8 Phospho (STY) _ALS(ph)PVTSR_ ALS(0.955)PVT(0.045)SR ALS(13.28)PVT(-13.28)S(-39.8)R 0 0 1 0 Q96L91 Q96L91 Q96L91 EP400 E1A-binding protein p400 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.305969238281 2 455.723325 909.432097 40848.0673230688 1.8488 0.00084255 251430 114.58 251430 114.58 570.304669374038 45.074 0.78233 45.074 44.54 45.323 0 77 26 4 0.854630939719712 0.00391643030606292 0.0743293916240364 0.001349 1 10333 106.88 65.998 3 70832000 25164 24069 25774 23226 19961 22930 17148 22391 24288 3470.1 23814 22732 25841 23895 20566 22997 17786 22586 23663 3785.7 1 1 1 1 1 1 1 1 1 1 362 1710 318 339 402 402 3152 ALSQAAVEEEEEEEEEEEPAQGK 23 Unmodified _ALSQAAVEEEEEEEEEEEPAQGK_ 0 0 0 0 Q5JTH9 Q5JTH9 Q5JTH9 RRP12 RRP12-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1007.15179443359 3 854.040075 2559.0984 30890.2194735677 1.6279 0.0013903 178880 152.77 178890 152.78 1007.14889589356 65.03 0.31675 65.03 64.879 65.196 0 34 10 4 0.957899718225338 0.00158472729974937 0.0199366600182727 1.2343E-17 1 15279 223.93 210.66 1 9599000 5883.5 5724.9 6524.4 5952.5 4054.5 6313.8 4480.1 5452 5784.1 10206 5569.7 5409.4 6503.5 6103.8 4267.6 6320.9 4575.7 5809.7 5651.9 9736.4 1 1 1 1 1 1 1 1 1 1 363 1171 319 340 403 403 ALSQTVPSSGTNGVSLPADCTGAVPAASPDTAAWR 35 Phospho (STY) _ALSQTVPSSGTNGVSLPADCTGAVPAAS(ph)PDTAAWR_ ALSQTVPSSGTNGVSLPADCT(0.002)GAVPAAS(0.906)PDT(0.092)AAWR ALS(-92.28)QT(-84.83)VPS(-75.72)S(-71.52)GT(-67.91)NGVS(-50.57)LPADCT(-26.83)GAVPAAS(9.92)PDT(-9.92)AAWR 0 0 1 0 Q9H6Z4 Q9H6Z4 Q9H6Z4 RANBP3 Ran-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 931.699462890625 4 873.907983 3491.60283 34047.5311774662 1.6753 0.0014641 65558 57.292 65560 57.293 931.700821873937 83.137 0.37968 83.137 82.914 83.293 1.4211E-14 43 12 6 0.936659021317081 0.00231612893837899 0.0121936212783939 1.386E-05 1 19433 117.29 96.695 9 12257000 2169.1 1665.7 2355.1 1893.4 2940.6 2107.9 2463.8 2543.8 2490.2 14964 2053.2 1574.8 2367 1933.7 2942.8 2137 2531.6 2985.6 2455.9 14150 1 1 1 1 1 1 1 1 1 1 364 1948 320 341 404 404 3538 ALSSAGPIPIRPPIVPVK 18 Phospho (STY) _ALS(ph)SAGPIPIRPPIVPVK_ ALS(0.774)S(0.226)AGPIPIRPPIVPVK ALS(5.35)S(-5.35)AGPIPIRPPIVPVK 0 0 1 1 Q765P7 Q765P7 Q765P7 MTSS1L MTSS1-like protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.138916015625 3 631.363817 1891.06962 NaN NaN NaN NaN NaN NaN NaN NaN 95.597 1 95.597 95.097 96.097 0 NaN NaN NaN 7.4465E-05 1 22242 107.25 89.09 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 365 1311 321 342 405 405 2340 ALSSGGSITSPPLSPALPK 19 Phospho (STY) _ALSSGGSITSPPLS(ph)PALPK_ ALSSGGSITS(0.004)PPLS(0.995)PALPK ALS(-56.31)S(-51.63)GGS(-47.21)IT(-35.03)S(-23.58)PPLS(23.58)PALPK 0 0 1 0 Q6Y7W6 Q6Y7W6 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.432189941406 3 620.655325 1858.94414 36874.6326428184 1.8881 0.0011719 246150 152.78 246150 152.78 773.430919803921 83.351 0.35494 83.351 83.143 83.498 -1.4211E-14 26 11 3 0.376870604663609 0.000788870241722273 0.0235752558391111 0.0057976 1 19505 85.884 65.233 6 6361300 4239.2 4251.7 6227.9 4897.5 5159.5 6173.8 6769.9 5543.3 5015.2 14298 4018.8 4020.1 6146.7 5009.7 5320.1 6150.4 6765.8 6015.5 5022.9 13592 1 1 1 1 1 1 1 1 1 1 366 1288 322 343 406 406 2295;2296;2297 ALSSGGSITSPPLSPALPK 19 Phospho (STY) _ALSSGGSITS(ph)PPLSPALPK_ ALSSGGSIT(0.026)S(0.974)PPLSPALPK ALS(-61.02)S(-53.73)GGS(-40.04)IT(-15.8)S(15.8)PPLS(-82.18)PALPK 0 0 1 0 Q6Y7W6 Q6Y7W6 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.326171875 4 465.743313 1858.94414 40903.9432141736 1.2002 0.00055897 246020 114.58 246020 114.58 580.575733987742 85.86 0.85901 85.86 85.419 86.278 -1.4211E-14 103 29 5 0.988641485421726 0.00373408082518626 0.0361489516367802 4.7095E-11 1 20006 184.62 143.76 6 50482000 4847.7 4257.3 5876.2 4067 3288.3 5137.6 3029.3 4646.4 5561.2 2134.7 4591 4020.6 5825.7 4204.7 3488.5 5099.8 3165.3 4744 5379.9 2117.6 1 1 1 1 1 1 1 1 1 1 367 1288 322 343 407 407 2295;2296;2297 ALSSGGSITSPPLSPALPK 19 Phospho (STY) _ALS(ph)SGGSITSPPLSPALPK_ ALS(0.621)S(0.188)GGS(0.071)IT(0.111)S(0.009)PPLSPALPK ALS(5.2)S(-5.2)GGS(-9.45)IT(-7.46)S(-18.18)PPLS(-65.22)PALPK 0 0 1 0 Q6Y7W6 Q6Y7W6 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.764282226563 3 620.655325 1858.94414 38147.6390669491 1.9552 0.0012135 246150 152.78 246150 152.78 773.764913123784 87.116 0.71113 87.116 86.789 87.5 0 37 23 3 0.955363520905659 0.000723445729263252 0.0106330195899291 0.0025435 1 20336 94.671 66.701 6 7962000 5468.7 5104.6 5149.8 5055.7 6147.9 5244.9 6148.3 5231.9 5279.4 12703 5173.6 4821.8 5216.1 5197.1 6179.2 5272.6 6234.6 5631.2 5246 12083 1 1 1 1 1 1 1 1 1 1 368 1288 322 343 408 408 2295;2296;2297 ALTQPSPVSTPSSVQFFLQEDDSADR 26 Phospho (STY) _ALTQPS(ph)PVSTPSSVQFFLQEDDSADR_ ALT(0.025)QPS(0.964)PVS(0.01)TPSSVQFFLQEDDSADR ALT(-15.82)QPS(15.82)PVS(-19.69)T(-32.86)PS(-63.01)S(-71.28)VQFFLQEDDS(-155.85)ADR 0 0 1 0 P04920 P04920 P04920 SLC4A2 Anion exchange protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1044.83288574219 3 968.109597 2901.30696 30969.328896124 1.4919 0.0014443 78904 76.388 78905 76.389 1044.49706460285 98.483 0.64064 98.483 98.021 98.662 0 46 21 4 0.936228306657681 0.00226900635791262 0.03468517541521 9.4346E-09 2 22846 173.95 151.32 7 13747000 8689.7 10160 7712.8 9805.2 9613.7 7498.2 8550.6 11793 9369.4 82106 8219.1 9595.7 7843.8 10052 9629.5 7827.3 8777.3 14137 9210.1 77586 2 2 2 2 2 2 2 2 2 2 369 297 323 344 409;410 409 488 ALTSADGASEEQSQNDEDNQGSEK 24 Unmodified _ALTSADGASEEQSQNDEDNQGSEK_ 0 0 0 0 Q92552 Q92552 Q92552 MRPS27 28S ribosomal protein S27, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 990.462646484375 3 837.351424 2509.03244 31179.0488043369 2.0481 0.001715 182450 152.77 182450 152.77 990.791764116473 42.08 0.48209 42.08 41.884 42.366 0 47 16 4 0.963176086388676 0.00212416345465415 0.0317479590242329 5.9715E-25 1 9608 281.07 258.19 1 16327000 6925.7 6780 6700.3 6069.6 5706.1 7386.6 5961.4 7680 7991.7 2713.1 6552.6 6400.8 6748.1 6296.6 5854.8 7353.9 6111.5 7774 7799.3 2732.5 1 1 1 1 1 1 1 1 1 1 370 1598 324 345 411 411 ALTSFLPAPTQLSQDQLEAEEK 22 Acetyl (Protein N-term) _(ac)ALTSFLPAPTQLSQDQLEAEEK_ 1 0 0 0 Q13573 Q13573 Q13573 SNW1 SNW domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 896.811950683594 3 820.08311 2457.2275 32025.7545132451 0.92785 0.00076091 93150 76.39 93150 76.391 896.808399425496 101.6 0.14451 101.6 101.53 101.67 0 6 4 2 0.13722638501512 0.000155576091636321 0.00381420725402235 2.8751E-06 1 23907 97.69 81.571 1 16997000 5952.4 8557.4 6393.6 7112 5321.2 7047.2 6377.9 9654.7 7634.2 60373 5634.1 8075.7 6401.5 7389.5 5479.4 7213 6475.8 11402 7479.4 57072 1 1 1 1 1 1 1 1 1 1 371 967 325 346 412 412 ALTVPELTQQVFDAK 15 Unmodified _ALTVPELTQQVFDAK_ 0 0 0 0 P07437 P07437 P07437 TUBB Tubulin beta chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.080383300781 3 553.969922 1658.88794 37639.7739969184 2.0754 0.0011497 275780 152.78 275780 152.78 707.079621082645 100.07 0.16744 100.07 99.975 100.14 0 18 5 4 0.947788006020089 0.00686655534862875 0.140456690049868 1.1879E-10 1 23340 193.06 172.4 1 41435000 18859 21559 17857 23575 19180 19932 18840 23272 26506 45326 17841 20377 18054 24024 19389 20269 19404 24579 25829 43219 1 1 1 1 1 1 1 1 1 1 372 320 326 347 413 413 ALVATPGKK 9 Phospho (STY) _ALVAT(ph)PGKK_ ALVAT(1)PGKK ALVAT(100.38)PGKK 0 0 1 1 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.342346191406 3 322.179087 963.515433 42546.6944780539 0.97853 0.00031526 711290 229.16 711290 229.16 551.341977923869 53.025 0.86735 53.025 52.697 53.564 0 87 30 4 0.95926333263121 0.00299906862375407 0.0100618372142547 0.002412 1 12352 100.38 64.724 1 159470000 162610 68577 167310 68633 45702 160870 46780 92935 77201 4416.2 153890 64783 166710 71949 53602 156290 48399 95986 74884 6309.2 1 1 1 1 1 1 1 1 1 1 373 437 327 348 414 414 4416 ALVEFESNPEETREPGSPPSVQR 23 Phospho (STY) _ALVEFESNPEETREPGS(ph)PPSVQR_ ALVEFESNPEETREPGS(0.998)PPS(0.002)VQR ALVEFES(-102.03)NPEET(-36.81)REPGS(27.22)PPS(-27.22)VQR 0 0 1 1 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 955.796569824219 3 879.072706 2634.19629 32222.2518691991 1.4354 0.0012618 86895 76.387 86896 76.388 955.794388253998 69.81 1.1538 69.81 69.179 70.333 0 177 39 7 0.985916337627368 0.00432634540519424 0.0458780621211047 1.0612E-17 1 16294 224.56 202 4 102160000 7018.9 8299.8 7520 8073.4 6300.4 7208.6 6878.7 7620.2 8895.7 21604 6643.6 7839.2 7529.5 8289.4 6475.7 7310 7029.4 8278.6 8691.9 20519 1 1 1 1 1 1 1 1 1 1 374 1944 328 349 415 415 3527 ALVLDCHYPEDEVGQEDEAESDIFSIR 27 Unmodified _ALVLDCHYPEDEVGQEDEAESDIFSIR_ 0 0 0 0 Q07021 Q07021 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1123.19567871094 3 1046.13991 3135.39789 29815.6647073861 0.4975 0.00052046 73019 76.388 73019 76.388 1122.86279695153 95.287 1.3182 95.287 94.738 96.056 0 179 45 5 0.960986586380291 0.0019316210026697 0.0117403238858118 2.1445E-12 1 22082 171.72 169.09 1 34094000 2170.1 2917.1 2267 2398.7 1975.2 2190.4 2247.7 3620.6 2113.6 24410 2053.8 2752.7 2274.1 2491.2 2025.4 2268.8 2271.2 4311.8 2091.2 23069 1 1 1 1 1 1 1 1 1 1 375 879 329 350 416 416 ALVLDCHYPEDEVGQEDEAESDIFSIR 27 Unmodified _ALVLDCHYPEDEVGQEDEAESDIFSIR_ 0 0 0 0 Q07021 Q07021 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 842.151916503906 4 784.856749 3135.39789 35489.0956286348 1.4911 0.0011703 72996 57.291 72997 57.292 842.398804021617 95.37 1.2604 95.37 94.738 95.999 1.4211E-14 151 43 5 0.648985414053566 0.00119766539930387 0.0199724976858124 1.9767E-12 1 22206 163.62 146.9 1 22796000 4421.4 5142.2 3441 5212.5 4389.9 5345.1 3944.9 5485.9 5041.7 18228 4180.1 4858.1 3532.1 5349.8 4393.6 5387.8 4067 6046.6 4928.1 17291 1 1 1 1 1 1 1 1 1 1 376 879 329 350 417 417 ALVLELCCNDESGEDVEVPYVR 22 Unmodified _ALVLELCCNDESGEDVEVPYVR_ 0 0 0 0 P22314 P22314 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 932.455444335938 3 856.064844 2565.1727 32736.4114353368 1.8617 0.0015937 89230 76.387 89232 76.388 932.786656564288 97.19 0.5808 97.19 96.95 97.531 0 44 19 3 0.796875059949101 0.00120024802724835 0.0175741704866936 0.0021141 1 22571 96.591 81.169 1 8436200 2298.9 2933.6 2738.8 2693.6 3689.1 3106.3 3370.3 3143.7 2733.8 19378 2177 2769.9 2743.5 2787 3682.5 3132.1 3428.5 3735.8 2724.4 18319 1 1 1 1 1 1 1 1 1 1 377 457 330 351 418 418 ALVSHNGSLINVGSLLQR 18 Phospho (STY) _ALVSHNGS(ph)LINVGSLLQR_ ALVSHNGS(1)LINVGSLLQR ALVS(-53.03)HNGS(53.03)LINVGS(-68.55)LLQR 0 0 1 0 Q8N163 Q8N163 Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.734741210938 3 653.345485 1957.01462 36059.5866830124 1.9665 0.0012848 116920 76.389 116920 76.39 729.733480027354 92.887 0.51906 92.887 92.63 93.149 0 51 17 4 0.99000881778123 0.00158808109759327 0.0261792001342618 1.8276E-08 1 21615 173.36 140.97 3 16385000 5645.9 2801.3 4207.5 4015.9 5207.2 5537.1 5030.7 5581.1 3380.9 9885.4 5337 2653.2 4331.3 4073.8 5221.2 5501.4 5084.1 5894.4 3405.9 9437.4 1 1 1 1 1 1 1 1 1 1 378 1451 331 352 419 419 2687 ALVTVSRSPPGSGASTPVGPWDQAVQR 27 Acetyl (Protein N-term),Phospho (STY) _(ac)ALVTVSRS(ph)PPGSGASTPVGPWDQAVQR_ ALVT(0.023)VS(0.196)RS(0.611)PPGS(0.065)GAS(0.079)T(0.027)PVGPWDQAVQR ALVT(-14.31)VS(-4.93)RS(4.93)PPGS(-9.73)GAS(-8.89)T(-13.6)PVGPWDQAVQR 1 0 1 1 Q8TE77 Q8TE77 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 948.470825195313 3 948.1343 2841.38107 32205.1497136797 0.7461 0.0007074 0.17795 0.00016872 0.92405 0.00087613 948.470059586373 88.095 0.69175 88.095 87.704 88.396 1.4211E-14 98 23 6 0.888111314877768 0.0127174392695691 0.252950119705061 4.8498E-12 1 20526 59.352 45.466 6 50461000 4563.9 3835.8 5614.5 5100.8 7750.7 3901.1 6694.6 4702 5544.1 22988 4322.6 3630.8 5617.2 5140.8 7723.3 4017.1 6833.7 5378.1 5519.1 21755 1 1 1 1 1 1 1 1 1 1 379 1549 332 353 420 420 2842 AMGIMNSFVNDIFER 15 Oxidation (M) _AM(ox)GIMNSFVNDIFER_ AM(0.995)GIM(0.005)NSFVNDIFER AM(23.19)GIM(-23.19)NSFVNDIFER 0 1 0 0 Q99880;Q99879;Q99877;Q93079;Q8N257;Q5QNW6;Q16778;P62807;P58876;P57053;P33778;P23527;P06899;O60814 Q99880 Q99880 HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST3H2BB;HIST2H2BF;HIST2H2BE;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BK Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 3-B;Histone H2B type 2-F;Histone H2B type 2-E;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 995.494873046875 2 880.41074 1758.80693 31949.6427140776 1.7302 0.0015233 130150 114.58 130150 114.58 995.493553604633 100.9 0.14253 100.9 100.81 100.95 0 12 4 4 1 0.000422260031063889 0.0211489651201476 9.6733E-05 1 23658 119.25 100.52 2 31120000 11776 12793 12992 13781 15103 10716 16751 16540 15004 66023 11148 12090 13041 14040 15224 11075 16924 18354 14878 62552 1 1 1 1 1 1 1 1 1 1 380 156 333 354 421 421 17 AMGIMNSFVNDIFER 15 Unmodified _AMGIMNSFVNDIFER_ 0 0 0 0 Q99880;Q99879;Q99877;Q93079;Q8N257;Q5QNW6;Q16778;P62807;P58876;P57053;P33778;P23527;P06899;O60814 Q99880 Q99880 HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST3H2BB;HIST2H2BF;HIST2H2BE;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BK Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 3-B;Histone H2B type 2-F;Histone H2B type 2-E;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.334045410156 3 581.944614 1742.81201 37865.5035728956 1.5499 0.00090193 131260 76.387 131260 76.388 658.332615720776 101.89 0.11095 101.89 101.82 101.93 0 11 3 5 0.985960788704508 0.00338088082706504 0.0672715386301123 2.0849E-11 1 24000 209.79 188.56 1 31480000 3039.6 3199.3 2974.8 3110.6 3436.3 3169.8 3001.7 3531.5 2676.1 13750 2876 3021.8 3004 3200.3 3453.4 3205 3067.4 3942.6 2654.3 13029 1 1 1 1 1 1 1 1 1 1 381 156 333 355 422 422 AMLDQLMGTSR 11 Oxidation (M),Phospho (STY) _AMLDQLM(ox)GT(ph)SR_ AMLDQLM(1)GTSR AMLDQLMGT(0.515)S(0.485)R AM(-62.36)LDQLM(62.36)GTSR AMLDQLMGT(0.26)S(-0.26)R 0 1 1 0 Q9Y383 Q9Y383 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.363037109375 2 659.780188 1317.54582 34962.1557530574 1.6924 0.0011166 173670 114.58 173670 114.58 774.362056776343 69.914 0.87295 69.914 69.46 70.333 0 83 29 4 0.991832920226854 0.00290311028937862 0.0574841924859323 0.014442 1 16379 86.756 65.999 4 52347000 10495 32273 9940.8 30488 11492 10421 12139 17423 32985 13799 9928.9 30477 10062 31090 11599 11455 12896 17621 31662 13396 1 1 1 1 1 1 1 1 1 1 382 2262 334 356 423 423 247;248 4190;4847 AMLDQLMGTSR 11 Oxidation (M),Phospho (STY) _AM(ox)LDQLMGTS(ph)R_ AM(1)LDQLMGTSR AMLDQLMGT(0.073)S(0.927)R AM(38.46)LDQLM(-38.46)GTSR AMLDQLMGT(-11.02)S(11.02)R 0 1 1 0 Q9Y383 Q9Y383 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.361389160156 2 659.780188 1317.54582 35197.8929497796 2.1828 0.0014402 173660 114.58 173670 114.58 774.360344304481 73.853 0.59759 73.853 73.501 74.098 0 37 20 2 0.983628339733984 0.00183053054623661 0.0693462372339018 0.039172 1 17317 52.891 33.333 4 40703000 10532 30307 11548 31543 11302 11001 10850 20554 37758 29130 9970.1 28637 11566 31982 11503 12118 11803 21125 36114 27905 1 1 1 1 1 1 1 1 1 1 383 2262 334 356 424 424 247;248 4190;4847 AMLDQLMGTSR 11 Oxidation (M),Phospho (STY) _AM(ox)LDQLMGTS(ph)R_ AM(1)LDQLMGTSR AMLDQLMGT(0.01)S(0.99)R AM(63.51)LDQLM(-63.51)GTSR AMLDQLMGT(-19.88)S(19.88)R 0 1 1 0 Q9Y383 Q9Y383 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.36328125 2 659.780188 1317.54582 35257.0614302745 1.9996 0.0013193 173670 114.58 173670 114.58 774.36142879167 74.772 0.67091 74.772 74.419 75.09 0 62 22 4 0.986749969651401 0.00330072981466402 0.12455586370732 0.0063886 1 17539 87.914 58.597 4 29670000 8318.9 22131 8163.4 22439 8615 8351 8483 14067 26105 19499 7871.3 20908 8234.3 22795 8730.7 9107.8 9123.9 14476 25011 18686 1 1 1 1 1 1 1 1 1 1 384 2262 334 356 425 425 247;248 4190;4847 AMLDQLMGTSR 11 Phospho (STY) _AMLDQLMGTS(ph)R_ AMLDQLMGT(0.035)S(0.965)R AMLDQLMGT(-14.36)S(14.36)R 0 0 1 0 Q9Y383 Q9Y383 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.364501953125 2 651.782731 1301.55091 35484.1809442899 1.4145 0.00092191 175800 114.58 175800 114.58 766.36424809585 94.983 1.1923 94.983 94.543 95.736 -1.4211E-14 124 41 5 0.997347826095459 0.00250594781434614 0.052947406515448 4.2981E-07 1 22053 164.65 137.55 2 110560000 6211.4 22196 8887.1 22329 7490.9 8870.7 7629.8 15717 28043 20103 5887.6 20968 8778.1 22702 7705.5 9615.9 8318.8 16105 26804 19293 1 1 1 1 1 1 1 1 1 1 385 2262 334 357 426 426 4190;4847 AMLDSGIYPPGSPGK 15 Oxidation (M),Phospho (STY) _AM(ox)LDSGIYPPGS(ph)PGK_ AM(1)LDSGIYPPGSPGK AMLDS(0.002)GIY(0.014)PPGS(0.985)PGK AM(45.44)LDSGIYPPGSPGK AMLDS(-27.3)GIY(-18.61)PPGS(18.61)PGK 0 1 1 0 O95295 O95295 O95295 SNAPIN SNARE-associated protein Snapin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.349731445313 3 529.237113 1584.68951 40014.9591109325 2.1107 0.001117 288670 152.78 288670 152.78 682.347763567436 68.455 1.0784 68.455 68.185 69.264 0 79 36 3 0.802481243268095 0.00235918651519645 0.0301698235413167 0.044109 1 16076 45.436 14.609 3 10969000 9755.4 11703 11092 10101 10625 10628 10862 11504 10842 6292.4 9236.2 11047 11087 10478 10814 10652 11045 11695 10698 6191.3 1 1 1 1 1 1 1 1 1 1 386 241 335 358 427 427 21 413 AMLDSGIYPPGSPGK 15 Phospho (STY) _AMLDSGIYPPGS(ph)PGK_ AMLDSGIYPPGS(1)PGK AMLDS(-64.67)GIY(-44.82)PPGS(44.82)PGK 0 0 1 0 O95295 O95295 O95295 SNAPIN SNARE-associated protein Snapin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.681762695313 3 523.905475 1568.6946 37737.9706706724 2.136 0.0011191 291610 152.78 291610 152.78 676.682155932991 79.266 1.4674 79.266 78.607 80.075 0 152 50 4 0.811710980926032 0.000927207731418362 0.0125141545471014 0.00016009 1 18524 102.89 88.209 3 25684000 7740.2 7391.4 8782.2 6814.8 7027.9 9246.4 8551.7 8667.4 8049.9 5545.1 7328.1 6979.1 8764.7 7071.5 7256.6 9162.8 8617.9 8883.6 7964.1 5422 1 1 1 1 1 1 1 1 1 1 387 241 335 359 428 428 413 AMSTSQSPTR 10 Oxidation (M),Phospho (STY) _AM(ox)STSQS(ph)PTR_ AM(1)STSQSPTR AMS(0.019)T(0.071)S(0.058)QS(0.849)PT(0.003)R AM(49.63)STSQSPTR AMS(-16.57)T(-10.76)S(-11.64)QS(10.76)PT(-24.62)R 0 1 1 0 Q15776 Q15776 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.81689453125 2 581.233928 1160.4533 37496.9869849995 2.1969 0.0012769 197140 114.58 197140 114.58 695.81581500248 22.226 0.23168 22.226 22.111 22.342 0 17 7 3 0.950391722611314 0.00111274710111205 0.0169281006019761 0.0443 1 5008 49.632 41.213 5 1533300 1082.6 1573.7 1195.9 1443.1 883.39 1007.5 1001.5 1559.5 1732.7 1000.5 1024.9 1485.9 1194.1 1482.7 917.27 1038.1 1033.7 1573.1 1678.7 978.15 1 1 1 1 1 1 1 1 1 1 388 1095 336 360 429 429 146 1898 AMSTSQSPTR 10 Phospho (STY) _AMSTSQS(ph)PTR_ AMSTS(0.001)QS(0.99)PT(0.009)R AMS(-52.99)T(-39.68)S(-31.96)QS(20.35)PT(-20.35)R 0 0 1 0 Q15776 Q15776 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.819274902344 2 573.23647 1144.45839 38139.7279303697 1.6756 0.0009605 199890 114.58 199890 114.58 687.817863125291 29.15 0.29347 29.15 28.987 29.28 0 23 9 3 0.903188706934799 0.00062138739444761 0.018315530673646 3.5702E-06 1 6502 142.89 96.894 5 8892000 9215.2 10185 8934.4 10306 7550.9 8939.2 7001.2 10058 9176.1 4380.6 8718.8 9622.5 8994.6 10552 7738.7 9043.5 7212.6 10177 8961.9 4357.6 1 1 1 1 1 1 1 1 1 1 389 1095 336 361 430 430 1898 AMSTTSISSPQPGK 14 Phospho (STY) _AMSTTSISS(ph)PQPGK_ AMSTT(0.001)S(0.004)IS(0.102)S(0.893)PQPGK AMS(-36.87)T(-37.68)T(-31.18)S(-23.53)IS(-9.41)S(9.41)PQPGK 0 0 1 0 Q9UJU6 Q9UJU6 Q9UJU6 DBNL Drebrin-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 644.330932617188 3 491.221463 1470.64256 40058.4899342751 1.465 0.00071962 311010 152.78 311010 152.78 643.996589787256 52.182 0.36517 52.182 52.041 52.406 0 37 12 4 0.997999711688256 0.00114725533698411 0.00927682240036169 0.0039263 1 12143 90.853 78.226 6 15045000 12319 12187 13413 12737 13072 15178 10242 12983 12229 5371.8 11661 11516 13434 13083 13248 15087 10616 13270 11982 5358.7 1 1 1 1 1 1 1 1 1 1 390 2161 337 362 431 431 3891;3892 AMSTTSISSPQPGK 14 Phospho (STY) _AMS(ph)TTSISSPQPGK_ AMS(0.694)T(0.161)T(0.14)S(0.004)ISSPQPGK AMS(6.33)T(-6.33)T(-6.94)S(-22.41)IS(-57.58)S(-61.35)PQPGK 0 0 1 0 Q9UJU6 Q9UJU6 Q9UJU6 DBNL Drebrin-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 965.486999511719 2 736.328556 1470.64256 31391.5502706735 1.4844 0.001093 311220 229.16 311220 229.16 965.488417983704 54.993 0.35144 54.993 54.81 55.162 0 20 11 3 0.947463708431607 0.000487086715936923 0.00297605153790221 3.4242E-07 1 12832 167.37 143.3 6 7930900 16630 7284.4 15616 8566.7 9915.8 17421 9839.9 11978 7699 10112 15733 6888.7 15713 8860 10396 17017 9961.2 12531 7687.4 9798.4 1 1 1 1 1 1 1 1 1 1 391 2161 337 362 432 432 3891;3892 AMTLSPQEEVAAGQMASSSR 20 Phospho (STY) _AMTLS(ph)PQEEVAAGQMASSSR_ AMT(0.041)LS(0.959)PQEEVAAGQMASSSR AMT(-13.64)LS(13.64)PQEEVAAGQMAS(-116.31)S(-120.63)S(-120.22)R 0 0 1 0 Q9Y6A5 Q9Y6A5 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.697998046875 3 710.978033 2129.91227 35544.1868054865 1.6685 0.0011863 107440 76.386 107440 76.387 787.697117570993 70.875 0.46177 70.875 70.655 71.117 0 41 15 3 0.976917202814967 0.00306860394908489 0.0110024460680245 1.2052E-05 1 16632 132.28 103.52 5 32184000 9155 10536 8502.5 9540.3 9940.1 8460 6309.5 11130 10089 15880 8660.5 9946.9 8609.8 9839.1 9954.6 8591.5 6700.4 11539 9794.9 15211 1 1 1 1 1 1 1 1 1 1 392 2310 338 363 433 433 4258 AMVSPFHSPPSTPSSPGVR 19 Phospho (STY) _AMVS(ph)PFHSPPSTPSSPGVR_ AMVS(0.945)PFHS(0.05)PPS(0.002)T(0.002)PS(0.001)S(0.001)PGVR AMVS(12.73)PFHS(-12.73)PPS(-27.86)T(-27.3)PS(-31.94)S(-31.94)PGVR 0 0 1 0 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.036071777344 3 673.311564 2016.91286 35720.5117292281 2.2156 0.0014918 113450 76.387 113450 76.388 750.032691876125 63.158 0.58855 63.158 62.874 63.462 -7.1054E-15 43 19 3 0.938301565473703 0.00124039766707647 0.0213510327110186 0.043701 1 14850 44.878 25.803 6 8099900 6061.7 7459 6410.9 7442 9425.6 6454.3 7884 8603.6 6991.9 26239 5737.2 7046.2 6469.4 7626.4 9364.5 6589.9 8074.9 9337.3 6936.8 24906 1 1 1 1 1 1 1 1 1 1 393 1243 339 364 434 434 2188;2189 AMVSPFHSPPSTPSSPGVR 19 2 Phospho (STY) _AMVS(ph)PFHS(ph)PPSTPSSPGVR_ AMVS(0.996)PFHS(0.793)PPS(0.072)T(0.048)PS(0.044)S(0.048)PGVR AMVS(31.35)PFHS(10.55)PPS(-10.55)T(-12.34)PS(-12.69)S(-12.34)PGVR 0 0 2 0 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.689208984375 3 699.967007 2096.87919 36379.8836031481 1.7441 0.0012208 109130 76.388 109130 76.389 776.688885504208 67.012 1.2173 67.012 66.487 67.705 0 133 41 5 0.700765654539439 0.0031611653192358 0.0576264090844792 0.051004 1 15705 49.618 33.853 15 24386000 13455 11231 15143 9803.6 9044.4 14540 8838.7 10809 10984 13348 12738 10602 15076 10229 9537.5 14341 9065.7 11389 10747 12819 1 1 1 1 1 1 1 1 1 1 394 1243 339 365 435 435 2188;2189 ANASNSPEGNK 11 Phospho (STY) _ANASNS(ph)PEGNK_ ANAS(0.002)NS(0.998)PEGNK ANAS(-26.43)NS(26.43)PEGNK 0 0 1 0 Q2TB10 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 813.898559570313 2 584.735149 1167.45575 34350.1505740773 2.164 0.0012654 391910 229.16 391910 229.16 813.897274644316 29.011 0.35354 29.011 28.837 29.191 3.5527E-15 29 11 4 0.976572568158243 0.00117253904560006 0.0306947816620928 1.9098E-07 1 6467 170.98 133.42 2 13533000 20031 21224 20259 19849 9602.8 20967 8776.5 16298 23003 3434.1 18955 20041 20255 20482 10376 20915 9363 16633 22094 3610.8 1 1 1 1 1 1 1 1 1 1 395 1123 340 366 436 436 1955 ANASNSPEGNKTK 13 Phospho (STY) _ANASNS(ph)PEGNKTK_ ANAS(0.001)NS(0.999)PEGNKTK ANAS(-31.4)NS(31.4)PEGNKT(-46.49)K 0 0 1 1 Q2TB10 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.037292480469 3 466.540072 1396.59839 38022.5123275935 2.2075 0.0010299 491200 229.16 491200 229.16 696.037017940534 31.739 0.40736 31.739 31.532 31.94 0 31 13 3 0.962187352638768 0.00169227591672897 0.00797749764747219 7.9078E-05 1 7086 121.27 102.67 3 13280000 16654 10239 17778 10905 7791.9 16665 7559.7 12640 10631 3374.5 15763 9676.4 17714 11249 8496.4 16403 7790.4 12936 10359 3470 1 1 1 1 1 1 1 1 1 1 396 1123 341 367 437 437 1955 ANEAGGQVGPEAPRPPETSPEMR 23 Phospho (STY) _ANEAGGQVGPEAPRPPET(ph)SPEMR_ ANEAGGQVGPEAPRPPET(0.5)S(0.5)PEMR ANEAGGQVGPEAPRPPET(0)S(0)PEMR 0 0 1 1 Q8N3D4 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 896.423156738281 3 819.700327 2456.07915 33009.4644069179 1.2225 0.0010021 93190 76.388 93191 76.389 896.422880632576 47.742 0.65403 47.742 47.412 48.066 0 68 22 5 0.977851648865519 0.00246961735006337 0.0372964204472057 3.5525E-12 1 11067 198.73 178.53 2 27282000 9163.6 12462 9936.8 11535 10371 9547.9 11330 10484 12628 5016.4 8674 11767 9968.5 11869 10514 9680.3 11523 10631 12405 4966.2 1 1 1 1 1 1 1 1 1 1 397 1461 342 368 438 438 2706;4674 ANFDEENAYFEDEEEDSSNVDLPYIPAENSPTR 33 Phospho (STY) _ANFDEENAYFEDEEEDSSNVDLPYIPAENS(ph)PTR_ ANFDEENAYFEDEEEDSSNVDLPYIPAENS(0.777)PT(0.223)R ANFDEENAY(-109.22)FEDEEEDS(-41.18)S(-41.18)NVDLPY(-34.85)IPAENS(5.43)PT(-5.43)R 0 0 1 0 Q86XP3 Q86XP3 Q86XP3 DDX42 ATP-dependent RNA helicase DDX42 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1373.251953125 3 1296.19696 3885.56906 26977.0608554749 1.5924 0.0020641 58932 76.387 58933 76.389 1372.91870438791 95.561 0.63622 95.561 95.333 95.969 0 78 21 6 0.979813639508522 0.00418033893441437 0.069660195904231 5.3604E-08 1 22226 153.53 145.77 6 26070000 330.3 300.27 315.76 571.02 492.92 526.48 476.87 831.39 457.8 21156 312.5 285.2 320.93 569.07 489.51 573.37 485.66 1459.6 452.52 19940 1 1 1 1 1 1 1 1 1 1 398 1398 343 369 439 439 2539 ANFDEENAYFEDEEEDSSNVDLPYIPAENSPTR 33 Phospho (STY) _ANFDEENAYFEDEEEDSSNVDLPYIPAENS(ph)PTR_ ANFDEENAYFEDEEEDS(0.001)S(0.001)NVDLPY(0.005)IPAENS(0.746)PT(0.247)R ANFDEENAY(-70.14)FEDEEEDS(-30.42)S(-30.42)NVDLPY(-21.33)IPAENS(4.79)PT(-4.79)R 0 0 1 0 Q86XP3 Q86XP3 Q86XP3 DDX42 ATP-dependent RNA helicase DDX42 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1029.94323730469 4 972.399542 3885.56906 30784.8041408732 1.5453 0.0015026 58917 57.291 58918 57.292 1030.19168247635 95.563 0.57602 95.563 95.333 95.909 0 76 19 5 0.953338033257262 0.00281332629938707 0.0885104285089919 0.00063669 1 22279 98.852 91.285 6 29014000 1915.1 1931.3 1741.9 1069.2 1634.4 1842.6 1349.6 1469.8 1589.3 23248 1811.5 1819.5 1762.1 1162.8 1661.2 1851.6 1394 2189.3 1558 21925 1 1 1 1 1 1 1 1 1 1 399 1398 343 369 440 440 2539 ANSFVGTAQYVSPELLTEK 19 Phospho (STY) _ANS(ph)FVGTAQYVSPELLTEK_ ANS(0.989)FVGT(0.011)AQYVSPELLTEK ANS(19.57)FVGT(-19.57)AQY(-100.27)VS(-133.72)PELLT(-187.94)EK 0 0 1 0 Q6A1A2;O15530 Q6A1A2 Q6A1A2 PDPK2P;PDPK1 Putative 3-phosphoinositide-dependent protein kinase 2;3-phosphoinositide-dependent protein kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.121337890625 3 712.008315 2133.00312 33497.5026537112 1.8302 0.0013031 214570 152.78 214570 152.78 865.117983509626 97.714 0.95715 97.714 97.329 98.286 0 140 32 6 0.988311379268449 0.0082446244042705 0.107365893246813 3.6604E-16 1 22639 228.18 209.81 5 199470000 9309.6 10157 9524 10227 6601.6 9815.5 5506.9 10094 10991 16450 8810.1 9595.1 9539.9 10490 6861.6 9891.4 5808.3 10610 10612 15723 1 1 1 1 1 1 1 1 1 1 400 96 344 370 441 441 162;4327 ANSFVGTAQYVSPELLTEK 19 Phospho (STY) _ANSFVGT(ph)AQYVSPELLTEK_ ANS(0.484)FVGT(0.516)AQYVSPELLTEK ANS(-0.28)FVGT(0.28)AQY(-44)VS(-45.11)PELLT(-85.07)EK 0 0 1 0 Q6A1A2;O15530 Q6A1A2 Q6A1A2 PDPK2P;PDPK1 Putative 3-phosphoinositide-dependent protein kinase 2;3-phosphoinositide-dependent protein kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1297.17517089844 2 1067.50883 2133.00312 28276.0919427981 1.7592 0.001878 214670 229.16 214670 229.17 1296.67311804137 97.71 0.34497 97.71 97.472 97.817 1.4211E-14 21 11 3 0.926427912751211 0.000478965443557512 0.0099586751427465 5.433E-08 1 22712 171.35 148.13 5 8139500 3689 5091 4306 4141.8 3125.1 5022.6 3787.3 5188.4 4324.4 27088 3493 4803.9 4287.2 4324.8 3251 5048.2 3838.1 6014.2 4244.1 25627 1 1 1 1 1 1 1 1 1 1 401 96 344 370 442 442 162;4327 ANSKSEGSPVLPHEPAK 17 2 Phospho (STY) _ANS(ph)KSEGS(ph)PVLPHEPAK_ ANS(0.972)KS(0.049)EGS(0.98)PVLPHEPAK ANS(15.26)KS(-15.26)EGS(16.68)PVLPHEPAK 0 0 2 1 Q9UKE5 Q9UKE5 Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.778686523438 3 636.614851 1906.82272 32311.1328172285 1.9317 0.0012298 359970 229.17 359980 229.17 866.11262365196 52.439 0.85906 52.439 52.011 52.87 0 124 29 7 0.977618129342635 0.00207526084557638 0.0377564004074808 9.5251E-05 1 12190 106.99 85.86 3 32925000 8544.4 26618 7691.4 25482 33160 8385.8 34915 22306 24364 12691 8082 25139 8109 25958 32162 9366.9 35168 22217 24487 12466 1 1 1 1 1 1 1 1 1 1 402 2170 345 371 443 443 3908;3909 ANSPSLFGTEGKPK 14 Phospho (STY) _ANS(ph)PSLFGTEGKPK_ ANS(0.964)PS(0.035)LFGTEGKPK ANS(14.36)PS(-14.36)LFGT(-35.55)EGKPK 0 0 1 1 Q96B97 Q96B97 Q96B97 SH3KBP1 SH3 domain-containing kinase-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.405578613281 3 504.907984 1511.70212 36918.6756123159 2.167 0.0010941 453870 229.16 453870 229.16 734.404513107871 65.179 0.80825 65.179 64.794 65.602 0 95 27 4 0.849980276831152 0.00613456806505545 0.154751359565669 0.0018174 1 15307 96.718 77.934 3 32056000 64007 7619.5 64227 8673.9 13660 65645 15233 29142 9916.8 6695.8 60568 7203.9 64044 9757.2 16865 62811 15284 30847 10010 6979.3 1 1 1 1 1 1 1 1 1 1 403 1655 346 372 444 444 3050 ANSSGLYK 8 Phospho (STY) _ANS(ph)SGLYK_ ANS(0.5)S(0.5)GLYK ANS(0)S(0)GLY(-37.54)K 0 0 1 0 Q9UID6 Q9UID6 Q9UID6 ZNF639 Zinc finger protein 639 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.364074707031 2 460.199683 918.384812 36915.4038547106 2.6996 0.0012424 497960 229.16 497970 229.16 689.362659600946 49.7 0.47225 49.7 49.453 49.925 0 52 15 4 0.904238513614669 0.00239592764914624 0.0224060811700606 0.0025959 1 11507 99.5 59.878 3 58506000 45815 35033 49803 30234 33872 50158 36835 39889 36417 6952.2 43368 33067 49730 31656 35356 49271 37342 40619 35951 7469.5 1 1 1 1 1 1 1 1 1 1 404 2155 347 373 445 445 3878;3879 ANVSSPHREFPPATAR 16 Phospho (STY) _ANVS(ph)SPHREFPPATAR_ ANVS(0.5)S(0.5)PHREFPPATAR ANVS(0)S(0)PHREFPPAT(-40.31)AR 0 0 1 1 Q92530 Q92530 Q92530 PSMF1 Proteasome inhibitor PI31 subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.675476074219 3 606.287858 1815.84175 38203.1620325817 1.7719 0.0010743 125990 76.387 125990 76.388 683.008428554917 38.536 1.2469 38.536 37.597 38.844 0 80 42 2 0.555111601884183 0.00108351929889803 0.016197454818097 0.011878 1 8684 68.639 54.065 3 13662000 12837 14634 11558 16623 17669 14497 20791 19249 19040 5732.2 12142 13835 11792 16913 17613 14696 20965 19296 18861 5843 1 1 1 1 1 1 1 1 1 1 405 1595 348 374 446 446 2927;2928 ANVSSPHREFPPATAR 16 Phospho (STY) _ANVS(ph)SPHREFPPATAR_ ANVS(0.5)S(0.5)PHREFPPATAR ANVS(0)S(0)PHREFPPAT(-42.98)AR 0 0 1 1 Q92530 Q92530 Q92530 PSMF1 Proteasome inhibitor PI31 subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.011169433594 3 606.287858 1815.84175 38203.2043179283 1.4598 0.00088506 125990 76.388 125990 76.389 682.675895929855 39.204 1.1661 39.204 38.784 39.95 0 73 39 2 0.679738010165021 0.00138657248987058 0.0164707783838197 0.012597 1 8850 66.636 52.73 3 16649000 12164 12673 11625 12239 15503 13033 16649 14363 13018 4771.2 11508 11969 11787 12606 15516 13054 16792 14499 12998 4825.1 1 1 1 1 1 1 1 1 1 1 406 1595 348 374 447 447 2927;2928 APACSPEAAAAQLR 14 Phospho (STY) _APACS(ph)PEAAAAQLR_ APACS(1)PEAAAAQLR APACS(126.96)PEAAAAQLR 0 0 1 0 O14526 O14526 O14526 FCHO1 F-BAR domain only protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.415466308594 2 746.83434 1491.65413 33356.2079674751 1.6508 0.0012328 153420 114.58 153430 114.58 861.416046157262 56.417 0.53837 56.417 56.126 56.664 0 53 17 4 0.951308775692053 0.00100263442412238 0.0196410461896249 9.9588E-05 2 13131 126.96 105.39 1 20747000 37444 30622 34929 28933 29986 37283 31182 32833 27613 35256 35422 28918 35257 29945 30735 37008 31586 34169 27397 33958 2 2 2 2 2 2 2 2 2 2 407 58 349 375 448;449 448 93 APAPVVLGSPVVLGPPVGQAR 21 Phospho (STY) _APAPVVLGS(ph)PVVLGPPVGQAR_ APAPVVLGS(1)PVVLGPPVGQAR APAPVVLGS(124.31)PVVLGPPVGQAR 0 0 1 0 Q6ZN55 Q6ZN55 Q6ZN55 ZNF574 Zinc finger protein 574 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.101745605469 3 687.713397 2060.11836 36311.8489482733 1.9657 0.0013518 111080 76.388 111080 76.39 764.103639603408 92.658 0.80263 92.658 92.198 93 0 70 27 4 0.851232903489432 0.00205089082746655 0.075105795288999 2.6789E-05 1 21524 124.31 107.03 1 23961000 4390 5154.7 4557.1 4086.4 3807.3 3898.8 4348.2 5386.5 3954.5 16890 4154.7 4863.4 4571 4258 3915.2 3966.8 4389.4 5854.3 3918.6 16028 1 1 1 1 1 1 1 1 1 1 408 1292 350 376 450 450 2306 APEGDDFLSLHAESDGEGALQVDLGEPAPAPPAADSR 37 Phospho (STY) _APEGDDFLSLHAES(ph)DGEGALQVDLGEPAPAPPAADSR_ APEGDDFLS(0.001)LHAES(0.999)DGEGALQVDLGEPAPAPPAADSR APEGDDFLS(-31.09)LHAES(31.09)DGEGALQVDLGEPAPAPPAADS(-267.68)R 0 0 1 0 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1337.94641113281 3 1261.23368 3780.67922 27296.6091943154 1.5875 0.0020022 60565 76.386 60566 76.388 1337.95307524944 93.604 0.66468 93.604 93.332 93.997 1.4211E-14 63 22 4 0.847153524539635 0.00166770010281289 0.0534687502589778 3.2193E-46 2 21777 349.58 325.47 3 22705000 885.64 2215.6 453.1 2284.3 1009.7 728 1532.7 3439.1 3335.9 68477 836.42 2093.4 456.3 2316.3 1000.8 962.12 1584.4 5407.9 3215.1 64559 2 2 1 2 2 2 2 2 2 2 409 1953 351 377 451;452 451 3548 APEKPLHEVPSGNSLLSSETILR 23 Phospho (STY) _APEKPLHEVPS(ph)GNSLLSSETILR_ APEKPLHEVPS(0.996)GNS(0.004)LLSSETILR APEKPLHEVPS(23.54)GNS(-23.54)LLS(-48.47)S(-47.6)ET(-61.03)ILR 0 0 1 1 Q96B97 Q96B97 Q96B97 SH3KBP1 SH3 domain-containing kinase-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1005.2138671875 3 852.101937 2553.28398 32363.3294613518 1.7774 0.0015146 179290 152.78 179300 152.78 1005.21280215173 81.435 0.54853 81.435 81.134 81.682 0 57 18 4 0.816172241485781 0.00348031928085246 0.0531569256099644 3.0401E-05 1 19055 123.31 107.04 5 29416000 21531 5283 21054 6131.6 7318.5 22416 6138.7 12928 6212.1 30627 20372 4995.5 21057 6505.6 8221.3 21681 6307.3 14258 6126.4 29138 1 1 1 1 1 1 1 1 1 1 410 1655 352 378 453 453 3051 APEPHVEEDDDDELDSK 17 Unmodified _APEPHVEEDDDDELDSK_ 0 0 0 0 P52566 P52566 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.384216308594 3 647.272835 1938.79667 35165.8868986969 1.6879 0.0010925 236030 152.78 236030 152.78 800.382182892644 50.113 1.1889 50.113 49.572 50.761 0 128 40 6 0.970180734698346 0.0114819528817757 0.104576065803467 3.25E-31 1 11605 296.52 256.84 1 368240000 74157 16304 83493 14753 76430 73971 80560 59593 15697 16982 70206 15393 83458 16194 77976 71353 80028 60845 18239 17369 1 1 1 1 1 1 1 1 1 1 411 692 353 379 454 454 APGPSPAK 8 Phospho (STY) _APGPS(ph)PAK_ APGPS(1)PAK APGPS(89.68)PAK 0 0 1 0 Q9H9J4 Q9H9J4 Q9H9J4 USP42 Ubiquitin carboxyl-terminal hydrolase 42 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.850036621094 2 402.686211 803.357869 39975.1204478633 1.5967 0.00064296 569090 229.16 569090 229.16 631.849297251592 36.718 0.32451 36.718 36.54 36.865 7.1054E-15 17 10 2 0.989727663969887 0.000533686330344102 0.00831802136716283 0.0079981 1 8289 89.679 59.905 1 8977500 10827 20451 13620 18813 13365 13244 14133 15816 20758 5840.2 10256 19310 13552 19327 13595 13566 14531 15941 20201 5865.3 1 1 1 1 1 1 1 1 1 1 412 1969 354 380 455 455 3582 APGSPLSSEGAAGEGVR 17 Phospho (STY) _APGS(ph)PLSSEGAAGEGVR_ APGS(0.986)PLS(0.013)S(0.001)EGAAGEGVR APGS(18.75)PLS(-18.75)S(-28.91)EGAAGEGVR 0 0 1 0 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 925.946655273438 2 811.364516 1620.71448 32515.2120222989 2.2406 0.001818 141220 114.58 141220 114.58 925.945442777495 49.517 0.81435 49.517 49.14 49.954 -7.1054E-15 101 27 5 0.980746676829759 0.00164813427203365 0.0585477761599076 6.0136E-31 1 11440 289.5 260.34 3 300000000 21346 10608 20135 8846.6 7074.5 20573 7537.3 13417 10888 7580.4 20195 10011 20185 9379.3 7960.1 20022 7741.8 13964 10601 7448.4 1 1 1 1 1 1 1 1 1 1 413 1243 355 381 456 456 2190 APGYPSSPVTTASGTTLR 18 Phospho (STY) _APGYPSS(ph)PVTTASGTTLR_ APGYPS(0.018)S(0.98)PVT(0.001)TASGTTLR APGY(-52.04)PS(-17.32)S(17.32)PVT(-29.92)T(-35.38)AS(-39.36)GT(-47.02)T(-47.02)LR 0 0 1 0 Q9HCK8 Q9HCK8 Q9HCK8 CHD8 Chromodomain-helicase-DNA-binding protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.346862792969 3 614.959296 1841.85606 36865.7404311892 1.8017 0.001108 124220 76.388 124220 76.389 691.347158472928 59.335 0.46148 59.335 59.105 59.566 -7.1054E-15 27 15 2 0.780631902681276 0.00209214317225886 0.0595847309065668 0.0070919 1 13900 82.189 63.825 8 21625000 10980 10452 11825 9615.4 12270 12050 14128 11285 10235 5850.4 10393 9868.7 11868 9963 12448 11971 14185 11526 10264 5770.1 1 1 1 1 1 1 1 1 1 1 414 1989 356 382 457 457 3612 APIDTSDVEEK 11 Phospho (STY) _APIDTS(ph)DVEEK_ APIDT(0.063)S(0.937)DVEEK APIDT(-11.74)S(11.74)DVEEK 0 0 1 0 Q06265 Q06265 Q06265 EXOSC9 Exosome complex component RRP45 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.438842773438 2 642.273773 1282.53299 34564.5596369284 2.5291 0.0016244 356800 229.16 356800 229.16 871.436723863848 63.186 0.81788 63.186 62.932 63.75 0 59 27 3 0.977155385247763 0.00120271657012873 0.0456771521413037 5.79E-10 1 14830 180.17 130.24 2 10203000 14696 21309 14407 21621 14956 13260 12696 16552 23052 19606 13905 20131 14526 22046 15123 13743 13315 17066 22306 18845 1 1 1 1 1 1 1 1 1 1 415 876 357 383 458 458 1419 APKPEDIDEEDDDVPDLVENFDEASKNEAN 30 Unmodified _APKPEDIDEEDDDVPDLVENFDEASKNEAN_ 0 0 0 2 Q96K17 Q96K17 Q96K17 BTF3L4 Transcription factor BTF3 homolog 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1012.74212646484 4 840.619392 3358.44846 30583.3595411644 1.1728 0.00098584 204460 171.87 204460 171.87 1012.99262199844 91.117 0.80211 91.117 90.65 91.452 -1.4211E-14 108 27 5 0.95193576147365 0.00254693498789338 0.0188176683272469 1.8088E-25 2 21260 255.41 233.89 1 68765000 8336.5 10753 11618 9995.5 13179 10032 13744 13018 11615 60694 7900.7 10154 11530 10310 13288 10206 13905 14771 11550 57452 2 2 2 2 2 2 2 2 2 2 416 1704 358 384 459;460 459 APLATGEDDDDEVPDLVENFDEASK 25 Unmodified _APLATGEDDDDEVPDLVENFDEASK_ 0 0 0 0 P20290 P20290 P20290 BTF3 Transcription factor BTF3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1050.83874511719 3 897.731242 2690.1719 30514.1999479176 1.839 0.001651 170180 152.77 170180 152.78 1050.83942230088 98.438 0.58331 98.438 98.137 98.72 0 52 19 4 0.976313400101877 0.00244030035683725 0.0427715046707212 3.6044E-18 2 22839 177.87 166.02 1 15966000 13966 14580 13474 14914 9522.3 15240 10986 16165 17042 80580 13214 13775 13550 15298 9922.9 15424 11278 18607 16559 76249 2 2 2 2 2 2 2 2 2 2 417 444 359 385 461;462 461 APLATGEDDDDEVPDLVENFDEASKNEAN 29 Unmodified _APLATGEDDDDEVPDLVENFDEASKNEAN_ 0 0 0 1 P20290 P20290 P20290 BTF3 Transcription factor BTF3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.424377441406 4 780.591641 3118.33746 32904.2979016085 1.6672 0.0013014 146790 114.58 146790 114.58 895.424136648894 97.895 1.1596 97.895 97.443 98.603 0 190 39 7 0.989154289557345 0.010232598900018 0.0823847252938742 9.2039E-18 1 22692 221.43 201.16 1 96912000 5834 6502.7 6025.4 5676.7 4273.1 6077.9 4374 5639.2 6324 10637 5521.1 6138.2 6035 5885.5 4443.1 6088.8 4500.9 5994.1 6157.2 10147 1 1 1 1 1 1 1 1 1 1 418 444 360 386 463 463 APLKPYPVSPSDK 13 Phospho (STY) _APLKPYPVS(ph)PSDK_ APLKPYPVS(0.746)PS(0.254)DK APLKPY(-43.79)PVS(4.67)PS(-4.67)DK 0 0 1 1 P41252 P41252 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.080078125 3 493.581209 1477.7218 37100.5014759699 2.0693 0.0010213 464290 229.16 464290 229.16 722.74403386573 65.605 0.70129 65.605 65.256 65.957 0 80 23 5 0.904553978719103 0.0023873239934757 0.0568117158520101 0.012093 1 15368 66.152 40.83 3 27086000 10165 16201 11616 19066 9654.2 12159 9479 14278 21788 7280.3 9624.4 15321 11588 19291 9922 12537 9994.3 14459 20976 7185.7 1 1 1 1 1 1 1 1 1 1 419 580 361 387 464 464 933 APPGQPAEPDAPRSSPGPGAR 21 Phospho (STY) _APPGQPAEPDAPRS(ph)SPGPGAR_ APPGQPAEPDAPRS(0.694)S(0.306)PGPGAR APPGQPAEPDAPRS(3.56)S(-3.56)PGPGAR 0 0 1 1 Q8IX07 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.715698242188 3 697.99177 2090.95348 35280.4098441468 1.2165 0.00084908 109440 76.388 109440 76.389 774.714186971855 34.911 0.78612 34.911 34.689 35.475 0 65 26 3 0.841562723354522 0.00110450296395509 0.00496128883930169 3.7488E-06 1 7872 136.71 116.97 2 19529000 11234 11531 10908 11909 14973 13289 16395 13522 12847 3204.5 10629 10895 11055 12226 14971 13267 16524 13651 12826 3330.4 1 1 1 1 1 1 1 1 1 1 420 1421 362 388 465 465 2588 APPPPSSPPPGGAPDGSEPSPDFPALLVEK 30 Phospho (STY) _APPPPSS(ph)PPPGGAPDGSEPSPDFPALLVEK_ APPPPS(0.386)S(0.614)PPPGGAPDGSEPSPDFPALLVEK APPPPS(-2.02)S(2.02)PPPGGAPDGS(-46.8)EPS(-54.15)PDFPALLVEK 0 0 1 0 O00459 O00459 O00459 PIK3R2 Phosphatidylinositol 3-kinase regulatory subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.691162109375 4 747.60731 2986.40013 32977.3657736831 1.8478 0.0013814 153260 114.58 153270 114.58 862.438566904611 100.05 0.22302 100.05 99.947 100.17 1.4211E-14 18 7 4 0.921752691397245 0.00563215020945477 0.132819976821491 0.0037288 1 23332 89.391 73.627 4 41032000 15749 15825 16479 19111 8496.2 18429 6747.5 14383 20445 30676 14905 14968 16450 19411 9081.5 18510 7327.5 15508 19592 29218 1 1 1 1 1 1 1 1 1 1 421 49 363 389 466 466 74 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 Phospho (STY) _APPQTHLPSGASSGTGSASATHGGGS(ph)PPGTR_ APPQTHLPSGASSGTGSAS(0.002)AT(0.069)HGGGS(0.925)PPGT(0.004)R APPQT(-178.99)HLPS(-140.17)GAS(-99.83)S(-86.03)GT(-75.49)GS(-54.2)AS(-27.01)AT(-11.24)HGGGS(11.24)PPGT(-24.1)R 0 0 1 0 P46379 P46379 P46379 BAG6 Large proline-rich protein BAG6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.621032714844 4 717.078246 2864.28388 35397.4693302747 1.076 0.00077159 79896 57.292 79897 57.292 774.871296319879 37.389 0.87475 37.389 36.895 37.769 -7.1054E-15 74 33 3 0.858011472881916 0.00184538702437885 0.0101884470704859 7.8637E-18 2 8395 216.18 198.65 10 120160000 21949 23565 22096 21695 24140 19136 27457 23809 22765 21081 20770 22251 22272 22349 24419 19393 27662 24336 22661 20401 2 2 2 2 2 2 2 2 2 2 422 609 364 390 467;468 467 1005 APQTSSSPPPVR 12 Phospho (STY) _APQTSSS(ph)PPPVR_ APQT(0.001)S(0.012)S(0.034)S(0.953)PPPVR APQT(-29.26)S(-19.06)S(-14.54)S(14.54)PPPVR 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.888305664063 2 652.305742 1302.59693 34922.9083545829 1.3192 0.00086053 175660 114.58 175660 114.58 766.887403687682 34.785 3.0493 34.785 34.162 37.211 0 332 104 7 0.995870663177485 0.0080949909226777 0.0746944671422266 3.4277E-11 2 7874 203.76 154.41 4 211630000 61566 86470 62600 89216 85881 62795 81301 75691 96241 6407.8 58261 81701 63252 91012 85727 64296 83387 75617 94328 7785.5 2 2 2 2 2 2 2 2 2 2 423 1436 365 391 469;470 470 2622 APQTSSSPPPVR 12 Phospho (STY) _APQTSSS(ph)PPPVR_ APQTSS(0.019)S(0.981)PPPVR APQT(-57.45)S(-40.7)S(-17.1)S(17.1)PPPVR 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 511.594360351563 3 435.206253 1302.59693 43539.014678481 0.44072 0.0001918 175520 76.388 175520 76.388 511.594012358559 34.701 3.0206 34.701 34.191 37.211 0 332 103 5 0.877714013413168 0.00343814506784185 0.0388246025192738 0.00010631 2 8089 112.63 100 4 135600000 20007 20028 21327 22289 20061 20526 17844 20139 21026 5466.6 18937 18932 21380 22719 20405 20658 18357 20381 20611 5613.5 2 2 2 2 2 2 2 2 2 2 424 1436 365 391 471;472 471 2622 APQTSSSPPPVR 12 Phospho (STY) _APQTSSS(ph)PPPVR_ APQT(0.007)S(0.029)S(0.153)S(0.811)PPPVR APQT(-20.85)S(-14.45)S(-7.25)S(7.25)PPPVR 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.887145996094 2 652.305742 1302.59693 32055.9428869953 1.9625 0.0012801 175660 114.58 175660 114.58 766.889817576934 37.852 0.95695 37.852 37.538 38.495 0 47 32 2 0.792815645346004 0.000588726562938424 0.0140403241900077 0.018976 1 8562 67.187 47.916 4 16750000 14774 13348 16735 15809 13394 14311 12550 14128 13566 7427.3 13987 12623 16696 16058 13779 14423 12844 14403 13343 7320.7 1 1 1 1 1 1 1 1 1 1 425 1436 365 391 473 473 2622 APRPSAPSPPPR 12 Phospho (STY) _APRPSAPS(ph)PPPR_ APRPS(0.072)APS(0.928)PPPR APRPS(-11.11)APS(11.11)PPPR 0 0 1 1 Q8IV50 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.607116699219 3 437.218605 1308.63398 44038.6931489355 0.83026 0.00036301 174710 76.387 174710 76.387 513.60530276062 32.991 1.5122 32.991 31.821 33.334 0 64 51 2 0.792858029283501 0.00116220401220584 0.0220300946672642 0.039123 1 7382 44.734 21.498 2 8412200 9090.1 10125 7746.6 12111 9323.3 9936.6 8919.2 9278.4 9992.3 2619.4 8596.5 9576.1 7896.1 12279 9363.5 10054 9127.7 9411.4 9813.9 2681.2 1 1 1 1 1 1 1 1 1 1 426 1409 366 392 474 474 2567 APSEIDPR 8 Phospho (STY) _APS(ph)EIDPR_ APS(1)EIDPR APS(109.83)EIDPR 0 0 1 0 O95801 O95801 O95801 TTC4 Tetratricopeptide repeat protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.291931152344 2 482.710415 963.406276 40288.4978692649 1.1692 0.00056437 237370 114.58 237370 114.58 597.291706741318 45.323 0.63658 45.323 44.859 45.495 0 48 21 3 0.774865463210826 0.00196503656223456 0.0107371492275338 0.0012271 1 10432 109.83 49.785 1 53189000 34934 33372 35864 36599 34436 37401 37500 34741 34693 8224.6 33060 31543 36047 37395 35071 37436 37947 35199 34351 8548.5 1 1 1 1 1 1 1 1 1 1 427 262 367 393 475 475 437 APSLTDLVK 9 Phospho (STY) _APS(ph)LTDLVK_ APS(0.995)LT(0.005)DLVK APS(22.74)LT(-22.74)DLVK 0 0 1 0 O15014 O15014 O15014 ZNF609 Zinc finger protein 609 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.423889160156 2 512.25974 1022.50493 37047.3656942641 2.2809 0.0011684 447360 229.16 447360 229.16 741.42266560825 86.905 0.88042 86.905 86.648 87.529 -1.4211E-14 74 29 4 0.855140858986323 0.00282929649040625 0.0788198271990268 0.00066689 1 20325 102.4 58.083 2 46617000 11888 19448 11643 20053 22754 12124 21325 19707 21263 25865 11248 18376 11871 20425 22415 12650 21774 20253 20983 24811 1 1 1 1 1 1 1 1 1 1 428 74 368 394 476 476 121 APSPAPSSVPLGSEKPSNVSQDR 23 Phospho (STY) _APS(ph)PAPSSVPLGSEKPSNVSQDR_ APS(0.995)PAPS(0.005)SVPLGSEKPSNVSQDR APS(23.35)PAPS(-23.35)S(-35.34)VPLGS(-78.4)EKPS(-102.64)NVS(-110.65)QDR 0 0 1 1 O75179 O75179 O75179 ANKRD17 Ankyrin repeat domain-containing protein 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 949.489196777344 3 796.379471 2386.11658 32052.8362933886 1.3334 0.0010619 191840 152.78 191840 152.78 949.489628818912 55.374 0.48959 55.374 55.134 55.623 0 72 16 6 0.962545559679315 0.00417472636040339 0.0361846386118383 2.4137E-12 1 12911 187.55 142.33 6 59786000 16620 26691 15571 28780 8404.8 17090 11257 17663 30884 6203 15722 25226 15657 29235 9011.2 17671 11860 17882 29641 6249.7 1 1 1 1 1 1 1 1 1 1 429 175 369 395 477 477 302 APSPHVVQENLHSEVVEVCTSSTLK 25 Phospho (STY) _APS(ph)PHVVQENLHSEVVEVCTSSTLK_ APS(1)PHVVQENLHSEVVEVCTSSTLK APS(52.71)PHVVQENLHS(-52.71)EVVEVCT(-157.98)S(-165.18)S(-171.62)T(-177.08)LK 0 0 1 0 O75592 O75592 O75592 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.172790527344 4 707.588757 2826.32592 33324.4201716177 1.7284 0.001223 161930 114.58 161930 114.58 822.421103040883 79.889 0.9281 79.889 79.446 80.374 -1.4211E-14 96 31 4 0.801375159658168 0.00107223404252366 0.00963474971731565 5.2778E-12 1 18672 183.59 164.38 6 31202000 3364.6 3602.9 4188.5 4744.5 4122.8 3593.4 4430.4 5087.2 4350.4 21127 3186.9 3410.1 4170 4783.3 4192 3711.8 4492.9 5681.5 4295.9 20012 1 1 1 1 1 1 1 1 1 1 430 194 370 396 478 478 339 APSPLPK 7 Phospho (STY) _APS(ph)PLPK_ APS(1)PLPK APS(94.69)PLPK 0 0 1 0 Q9BSL1 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.362548828125 2 395.198954 788.383356 39772.3887315845 1.7325 0.0006847 579870 229.16 579870 229.16 624.362069252324 53.404 0.71113 53.404 53.118 53.829 0 65 23 4 0.81072960050242 0.0055095279582196 0.155256735039463 0.0062596 1 12434 94.692 39.142 1 85368000 19233 107240 23214 103720 35407 17859 32622 54168 106410 3884.1 18214 101290 23291 105340 35242 22196 35361 53044 101860 4911 1 1 1 1 1 1 1 1 1 1 431 1817 371 397 479 479 3331 APSPPLSQVFQTR 13 Phospho (STY) _APS(ph)PPLSQVFQTR_ APS(1)PPLSQVFQTR APS(62.97)PPLS(-62.97)QVFQT(-115.07)R 0 0 1 0 Q9NRA8 Q9NRA8 Q9NRA8 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 868.950378417969 2 754.368873 1506.72319 33256.6297926175 1.6875 0.001273 151890 114.58 151890 114.58 868.950078183194 83.765 1.0714 83.765 83.172 84.244 0 126 36 4 0.979097238144293 0.00227511053591151 0.0794333590513514 2.3346E-10 1 19500 177.3 143.94 3 77561000 11412 8443.9 10141 8950.3 11207 11681 12297 11328 8014.2 18563 10794 7979.6 10300 9202.8 11321 11617 12347 11936 8089.3 17742 1 1 1 1 1 1 1 1 1 1 432 2014 372 398 480 480 3658 APSPPLSQVFQTR 13 Phospho (STY) _APS(ph)PPLSQVFQTR_ APS(1)PPLSQVFQTR APS(106.08)PPLS(-106.08)QVFQT(-196.63)R 0 0 1 0 Q9NRA8 Q9NRA8 Q9NRA8 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.636962890625 3 503.248341 1506.72319 40348.7599568387 1.4163 0.00071273 151790 76.387 151790 76.388 579.635725358657 83.726 1.1285 83.726 83.115 84.244 1.4211E-14 123 38 4 0.979519253273319 0.00111516147967915 0.0176643132233771 2.7746E-11 1 19672 206.19 183.02 3 49621000 2135.5 1991.9 2410.7 2317.5 1913.1 2579.6 2504.9 1986 2401.2 4365.7 2021.7 1883.6 2406.7 2363.8 1979 2574.7 2518.6 2146.7 2373.6 4156.8 1 1 1 1 1 1 1 1 1 1 433 2014 372 398 481 481 3658 APSPPVEHPR 10 Phospho (STY) _APS(ph)PPVEHPR_ APS(1)PPVEHPR APS(83.2)PPVEHPR 0 0 1 0 Q86WR7 Q86WR7 Q86WR7 PROSER2 Proline and serine-rich protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.905029296875 3 389.516651 1165.52812 47286.4173872118 0.10487 4.0848E-05 196110 76.388 196110 76.388 465.904674061888 35.309 0.79009 35.309 34.975 35.765 -7.1054E-15 49 26 2 0.47823654147467 0.000914977514185178 0.0224425553912366 0.0058 1 7941 83.204 71.49 1 7880800 15950 14685 16605 18139 10655 27619 12402 14646 10249 2519.2 15095 13892 16613 18566 11186 27102 12481 15269 10204 2711.1 1 1 1 1 1 1 1 1 1 1 434 1392 373 399 482 482 2531 APSPTAEQPPGGGDSAR 17 Phospho (STY) _APS(ph)PTAEQPPGGGDSAR_ APS(0.997)PT(0.003)AEQPPGGGDSAR APS(24.82)PT(-24.82)AEQPPGGGDS(-137.77)AR 0 0 1 0 Q15742 Q15742 Q15742 NAB2 NGFI-A-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 952.443725585938 2 837.859598 1673.70464 32852.4561402716 1.4013 0.0011741 136760 114.58 136760 114.58 952.441591683421 35.206 0.38471 35.206 34.975 35.36 0 27 12 3 0.924470829123468 0.000273183611420501 0.00411046032338029 9.3603E-16 1 7904 227 203.52 3 8243700 6389.7 5963.4 5724.4 6137.3 3761.4 4675.6 4086.4 5218.3 6387.6 2266.1 6043.8 5634.4 5779 6267.5 3939.7 4762.9 4207 5281.6 6205 2254.6 1 1 1 1 1 1 1 1 1 1 435 1091 374 400 483 483 1893 APSPTKPLR 9 Phospho (STY) _APS(ph)PTKPLR_ APS(0.826)PT(0.174)KPLR APS(6.77)PT(-6.77)KPLR 0 0 1 1 Q96FF9 Q96FF9 Q96FF9 CDCA5 Sororin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 502.294006347656 3 349.517992 1045.53215 44375.4505022128 1.0128 0.000354 437100 152.78 437100 152.78 502.29340242657 44.209 0.55009 44.209 43.875 44.426 0 52 18 4 0.962663729398648 0.00300022875892775 0.0596274827324331 0.0044432 1 10140 87.641 47.574 2 32816000 15157 28701 15929 27357 13302 17173 15655 19401 30841 3253.4 14346 27105 15967 28007 13701 17702 16238 19472 29787 3512.4 1 1 1 1 1 1 1 1 1 1 436 1677 375 401 484 484 3084 APSPTKR 7 Phospho (STY) _APS(ph)PTKR_ APS(0.982)PT(0.018)KR APS(17.46)PT(-17.46)KR 0 0 1 1 Q15287 Q15287 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.870239257813 2 418.704935 835.395318 39371.067818589 2.6043 0.0010904 547310 229.16 547320 229.16 647.867949491364 28.644 0.4909 28.644 28.405 28.896 0 45 16 4 0.874992993316306 0.00429570655592306 0.0765938789203095 0.020283 1 6360 74.376 35.158 2 43525000 23717 24674 23055 24003 23970 24782 26800 26297 26666 2975 22440 23305 23270 24699 24311 24830 27140 26409 26317 3409.9 1 1 1 1 1 1 1 1 1 1 437 1067 376 402 485 485 1841 APSVANVGSHCDLSLK 16 Phospho (STY) _APS(ph)VANVGSHCDLSLK_ APS(1)VANVGSHCDLSLK APS(40.84)VANVGS(-40.84)HCDLS(-101.42)LK 0 0 1 0 P21333 P21333 P21333 FLNA Filamin-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.043762207031 3 578.934205 1733.78078 37007.6338277551 1.6746 0.00096949 263890 152.78 263890 152.78 731.709780196746 66.049 0.79642 66.049 65.748 66.544 0 93 26 5 0.916477775349885 0.0053564405330561 0.0927617755895921 5.3363E-07 1 15483 143.29 121.09 3 69677000 13931 9814.9 15924 11424 28318 15564 31337 19184 11678 6540.4 13190 9281 16077 11698 28030 15473 31215 19300 12357 6602.5 1 1 1 1 1 1 1 1 1 1 438 451 377 403 486 486 734 APSVPAAEPEYPK 13 Phospho (STY) _APS(ph)VPAAEPEYPK_ APS(1)VPAAEPEYPK APS(103.12)VPAAEPEY(-103.12)PK 0 0 1 0 P54819 P54819 P54819 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.998474121094 3 479.22168 1434.64321 40724.6889485766 1.8023 0.00086369 318800 152.78 318800 152.78 632.331287985743 62.782 0.43476 62.782 62.555 62.99 -7.1054E-15 35 14 3 0.687941858371522 0.00118706165849671 0.0125714139982181 0.00010001 2 14755 116.86 95.305 2 11040000 12759 12627 13583 13189 20723 15680 19969 16749 13241 7248.8 12076 11931 13715 13548 20591 15633 20178 16978 13351 7213.2 2 2 2 2 2 2 2 2 2 2 439 714 378 404 487;488 487 1195 APSWSFPSNLGTK 13 Phospho (STY) _APS(ph)WSFPSNLGTK_ APS(0.633)WS(0.367)FPSNLGTK APS(2.37)WS(-2.37)FPS(-101.12)NLGT(-172.4)K 0 0 1 0 Q9BTV6 Q9BTV6 Q9BTV6 DPH7 Diphthine methyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.999938964844 3 491.225425 1470.65445 39029.7671785749 1.3192 0.00064802 311010 152.78 311010 152.78 644.000549226904 91.485 0.74052 91.485 91.14 91.88 -1.4211E-14 81 25 4 0.900741209834741 0.000994179847478685 0.00952994279876446 7.9711E-11 1 21270 192.78 152.5 4 27739000 5091.7 5582.8 5912.7 5446.4 5129.1 5022.7 5193.7 5355.5 6456.1 7290 4821.2 5273.1 5897.1 5593.7 5253.4 5071.3 5318.2 5578.7 6316.7 6988.3 1 1 1 1 1 1 1 1 1 1 440 1828 379 405 489 489 3347 APSYSGLSMVSGVK 14 Oxidation (M),Phospho (STY) _APS(ph)YSGLSM(ox)VSGVK_ APSYSGLSM(1)VSGVK APS(0.74)YS(0.26)GLSMVSGVK APSYSGLSM(115.38)VSGVK APS(4.54)Y(-57.12)S(-4.54)GLS(-74.3)MVS(-109.09)GVK 0 1 1 0 Q9UBP0 Q9UBP0 Q9UBP0 SPAST Spastin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.335754394531 3 493.558075 1477.6524 38669.1802061785 1.9277 0.00095142 309540 152.78 309540 152.78 646.335046475957 71.624 0.55288 71.624 71.314 71.867 0 45 18 3 0.867208106503046 0.000895585491140981 0.0117066707030939 0.00012271 1 16832 115.38 95.278 5 11522000 6873.5 6991.2 5688.2 6448.1 5558.6 6503.6 6418.8 6951.5 7999.5 8360 6499.6 6601.3 5795.9 6654.7 5662.2 6537.8 6535.8 7207.4 7826.1 8032.8 1 1 1 1 1 1 1 1 1 1 441 2124 380 406 490 490 223 3824 APSYSGLSMVSGVK 14 Phospho (STY) _APS(ph)YSGLSMVSGVK_ APS(0.947)YS(0.053)GLSMVSGVK APS(12.51)Y(-78.21)S(-12.51)GLS(-96.1)MVS(-153.47)GVK 0 0 1 0 Q9UBP0 Q9UBP0 Q9UBP0 SPAST Spastin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.337463378906 3 488.226437 1461.65748 39676.7964930973 1.6483 0.00080473 312920 152.77 312920 152.78 641.001297933093 84.214 0.53967 84.214 83.956 84.496 0 70 18 5 0.941635626973098 0.00334144551490599 0.0385776866618001 2.3028E-07 1 19653 166.3 151.33 5 33457000 7619.5 8364.5 7968 8285.4 6721.7 8962.8 7556.7 9210.5 10851 5541.2 7211.3 7901.2 7989.6 8522.9 6909.7 8967.2 7742.2 9396.2 10567 5430.9 1 1 1 1 1 1 1 1 1 1 442 2124 380 407 491 491 3824 APVAGTCYQAEWDDYVPK 18 Unmodified _APVAGTCYQAEWDDYVPK_ 0 0 0 0 P30086 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.756469726563 3 690.64729 2068.92004 32922.8639716132 1.7852 0.001233 221200 152.77 221200 152.77 843.755760978831 84.676 0.45764 84.676 84.467 84.924 0 43 15 4 0.980889096767172 0.00288875949152249 0.0537688791047531 2.0386E-05 1 19802 129.05 109.73 1 11104000 7443.5 7461.8 8212.2 7638.5 8735.7 8780.1 9603.2 9670.8 8364.9 22571 7046.3 7049.9 8233.1 7850.6 8845.2 8803.5 9699.7 10346 8306.2 21477 1 1 1 1 1 1 1 1 1 1 443 510 381 408 492 492 APVHFVEPLSPTGVAGHR 18 Phospho (STY) _APVHFVEPLS(ph)PTGVAGHR_ APVHFVEPLS(0.972)PT(0.028)GVAGHR APVHFVEPLS(15.46)PT(-15.46)GVAGHR 0 0 1 0 Q5T5Y3 Q5T5Y3 Q5T5Y3 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.717224121094 3 650.991042 1949.9513 37537.9007587013 2.0045 0.0013049 117340 76.388 117340 76.389 727.379601299109 69.37 0.45748 69.37 69.15 69.607 1.4211E-14 32 15 3 0.896983561550041 0.00239432819676656 0.029847201714323 5.3836E-05 1 16280 109.85 86.968 2 9425500 7248.4 7990.1 7684.6 8387.9 8915.4 7059.9 8781.5 8396.7 7548.4 7299.4 6860.5 7550.2 7727.7 8566.8 8971.7 7166.3 8911.4 8590.7 7500.3 7067.6 1 1 1 1 1 1 1 1 1 1 444 1188 382 409 493 493 2081 APVPEPGLDLSLSPRPDSPQPR 22 Phospho (STY) _APVPEPGLDLSLSPRPDS(ph)PQPR_ APVPEPGLDLSLSPRPDS(1)PQPR APVPEPGLDLS(-91.83)LS(-45.34)PRPDS(45.34)PQPR 0 0 1 1 Q8TAP8 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.124450683594 3 802.400206 2404.17879 33644.3404311088 1.6964 0.0013612 95201 76.389 95202 76.39 879.123104522059 80.594 0.7699 80.594 80.22 80.99 1.4211E-14 92 25 4 0.980348137671639 0.00782324776201407 0.0709510921133458 4.6683E-24 1 18834 277.79 256.22 3 70265000 5587.3 12633 7132.5 12856 7183.4 6746.6 7824.8 9288.8 12870 11294 5292.8 11935 7095 13089 7300.6 7088.3 8072.4 9559.2 12485 10849 1 1 1 1 1 1 1 1 1 1 445 1532 383 410 494 494 2815 APVPSTCSSTFPEELSPPSHQAK 23 Phospho (STY) _APVPSTCSSTFPEELS(ph)PPSHQAK_ APVPSTCSSTFPEELS(0.952)PPS(0.048)HQAK APVPS(-144.29)T(-145.01)CS(-134.35)S(-108.69)T(-89.26)FPEELS(12.93)PPS(-12.93)HQAK 0 0 1 0 Q14980 Q14980 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.120910644531 4 634.287181 2533.11962 35749.8826586132 2.0166 0.0012791 180650 114.58 180650 114.58 749.119483806155 67.936 1.0257 67.936 67.446 68.472 0 124 34 5 0.987789655149125 0.00263593203114958 0.0289713215029721 1.1161E-17 1 15948 220.53 200.94 7 18972000 4375.5 6440.2 5330.2 5947.8 6286.9 6052.6 7400.5 6810.3 6524.2 6073.8 4144 6081.1 5326.1 6138.7 6338.4 6083.1 7455.6 6984.8 6474.6 5876.9 1 1 1 1 1 1 1 1 1 1 446 1036 384 411 495 495 1785 APVQPQQSPAAAPGGTDEKPSGK 23 Phospho (STY) _APVQPQQS(ph)PAAAPGGTDEKPSGK_ APVQPQQS(1)PAAAPGGTDEKPSGK APVQPQQS(62.83)PAAAPGGT(-62.83)DEKPS(-73.89)GK 0 0 1 1 Q13200 Q13200 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.39697265625 4 575.274503 2297.0689 36345.8726326987 1.7122 0.00098499 298770 171.87 298770 171.87 747.397328161049 46.685 0.45285 46.685 46.436 46.888 0 66 15 6 0.887098655366179 0.00241250579272968 0.00979500841418933 2.8664E-05 1 10818 127.15 107.39 3 51881000 11493 13929 10570 14309 14519 12557 11716 12447 16962 7129.1 10871 13161 10740 14641 14467 12677 12204 12704 16513 7001 1 1 1 1 1 1 1 1 1 1 447 935 385 412 496 496 1539 APVSGSRSPDREASGSGGR 19 Phospho (STY) _APVSGSRS(ph)PDREASGSGGR_ APVS(0.076)GS(0.076)RS(0.844)PDREAS(0.002)GS(0.002)GGR APVS(-10.45)GS(-10.45)RS(10.45)PDREAS(-26.54)GS(-26.54)GGR 0 0 1 2 Q8N5F7 Q8N5F7 Q8N5F7 NKAP NF-kappa-B-activating protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.011962890625 3 637.288587 1908.84393 37365.6843637718 1.7715 0.0011289 119860 76.388 119870 76.389 713.676056768702 24.684 0.35047 24.684 24.511 24.861 0 22 11 2 0.808750874076147 0.00158294886423395 0.0163700125953879 0.051515 1 5513 52.359 16.247 5 6043100 1324.8 3886.8 2130.3 3600.7 2452 1619.1 2423.2 2568.9 4012.9 1492.9 1256.6 3670.1 2102.6 3682.7 2470.4 1726.1 2511.5 2585 3892.1 1465.2 1 1 1 1 1 1 1 1 1 1 448 1472 386 413 497 497 2719 APVSPLK 7 Phospho (STY) _APVS(ph)PLK_ APVS(1)PLK APVS(74.17)PLK 0 0 1 0 Q9UBS0 Q9UBS0 Q9UBS0 RPS6KB2 Ribosomal protein S6 kinase beta-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.370422363281 2 396.206779 790.399006 40312.1439194295 2.0525 0.00081323 578390 229.16 578390 229.16 625.36977974906 58.27 0.6171 58.27 57.963 58.581 -7.1054E-15 64 20 4 0.995377959815107 0.00266219503889065 0.0514737794592116 0.018214 1 13612 74.173 49.035 1 105660000 28933 40564 31674 40265 23134 30859 22600 32001 44269 6369.5 27389 38318 31630 41210 23993 31378 23623 32247 42761 6738.2 1 1 1 1 1 1 1 1 1 1 449 2127 387 414 498 498 3826 APVSSTESVIQSNTPTPPPSQPLNETAEEESR 32 Phospho (STY) _APVSSTESVIQSNTPT(ph)PPPSQPLNETAEEESR_ APVSSTESVIQSNT(0.005)PT(0.995)PPPSQPLNETAEEESR APVS(-103.58)S(-97.33)T(-90.94)ES(-82.27)VIQS(-41.06)NT(-22.95)PT(22.95)PPPS(-48.99)QPLNET(-110.78)AEEES(-136.63)R 0 0 1 0 Q9HC35 Q9HC35 Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.439575195313 4 865.650435 3458.57263 33455.3453782322 1.6789 0.0014534 66181 57.29 66183 57.291 923.440035274557 67.645 0.61887 67.645 67.416 68.035 0 73 20 5 0.968366054188514 0.00290342254052722 0.0628900143082275 4.616E-12 1 15890 198.15 188.34 10 14934000 3074.8 2269.6 3670.3 2919.9 4422.7 2724.7 4093.9 3557.6 3068.4 14069 2911.8 2147.7 3670.1 2955.2 4438.1 2776.8 4154.9 3960.2 3071.1 13330 1 1 1 1 1 1 1 1 1 1 450 1981 388 415 499 499 4773 APYSPTTSK 9 Phospho (STY) _APYS(ph)PTTSK_ APYS(0.912)PT(0.08)T(0.007)S(0.001)K APY(-56.42)S(10.57)PT(-10.57)T(-21.3)S(-31.38)K 0 0 1 0 Q96JH7 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.389709472656 2 516.225897 1030.43724 36413.1604216643 2.382 0.0012297 443920 229.16 443920 229.16 745.38820219031 46.809 0.51698 46.809 46.519 47.036 0 42 17 3 0.996618233188784 0.00374214619845705 0.0363005119543145 0.00029897 1 10817 122.69 75.43 5 47451000 51390 57050 55324 49283 45671 57007 49841 53845 55326 14917 48643 53849 55372 51200 46981 56785 50684 54582 54357 15292 1 1 1 1 1 1 1 1 1 1 451 1698 389 416 500 500 3117 AQAVSEDAGGNEGR 14 Unmodified _AQAVSEDAGGNEGR_ 0 0 0 0 P55884 P55884 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.892150878906 2 680.808019 1359.60148 36023.2324872483 2.2107 0.0015051 168300 114.58 168300 114.58 795.390048926561 28.518 0.26043 28.518 28.377 28.637 0 20 8 3 0.923547960068738 0.0003608780955196 0.010457959933964 0.026186 1 6351 88.163 61.779 1 4447100 6003.3 5175.2 6347.1 6762 6017.3 6953.8 5340.7 5669.6 6711.5 2488.2 5681.9 4897.9 6366.1 6849.3 6117.6 6950.2 5506.4 5811.7 6564.1 2474.2 1 1 1 1 1 1 1 1 1 1 452 725 390 417 501 501 AQFSVAGVHTVPGSPQAR 18 Phospho (STY) _AQFSVAGVHTVPGS(ph)PQAR_ AQFSVAGVHT(0.002)VPGS(0.998)PQAR AQFS(-65.94)VAGVHT(-26.05)VPGS(26.05)PQAR 0 0 1 0 Q9HBL0 Q9HBL0 Q9HBL0 TNS1 Tensin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.696411132813 3 630.30703 1887.89926 37038.2694740121 1.622 0.0010224 121190 76.388 121190 76.389 707.029138955143 60.906 0.43829 60.906 60.716 61.155 0 37 14 3 0.969801810549448 0.000926005781141456 0.032346288840059 4.4223E-05 1 14288 115.02 76.297 3 10553000 7435.5 7423.9 6833.2 7754.7 7507.4 7419.5 7928.2 6796.5 8844.3 5446.3 7033.7 7015 6924.3 7936.7 7585.5 7454.4 8075.1 7005.7 8687.8 5285.7 1 1 1 1 1 1 1 1 1 1 453 1980 391 418 502 502 3597 AQGEPVAGHESPKIPYEK 18 Phospho (STY) _AQGEPVAGHES(ph)PKIPYEK_ AQGEPVAGHES(0.657)PKIPY(0.343)EK AQGEPVAGHES(2.81)PKIPY(-2.81)EK 0 0 1 1 O94979 O94979 O94979 SEC31A Protein transport protein Sec31A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.818664550781 3 672.985734 2015.93537 33142.5063715388 1.7473 0.0011759 340520 229.16 340520 229.16 902.483227662273 55.208 0.52452 55.208 54.924 55.449 0 68 17 5 0.948104093199429 0.00312683669360071 0.0142777548952558 0.014269 1 12856 63.578 37.143 2 59542000 27538 34559 30733 33815 29206 31275 33215 34883 40027 23212 26070 32643 30752 34725 29791 31550 33804 35549 39206 22664 1 1 1 1 1 1 1 1 1 1 454 230 392 419 503 503 398 AQGVRSPLLR 10 Phospho (STY) _AQGVRS(ph)PLLR_ AQGVRS(1)PLLR AQGVRS(94.69)PLLR 0 0 1 1 O60343 O60343 O60343 TBC1D4 TBC1 domain family member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 469.267791748047 3 392.879812 1175.61761 45722.8631018117 0.35386 0.00013902 194430 76.388 194430 76.388 469.267500913875 45.164 0.55043 45.164 44.829 45.379 0 57 18 4 0.957024881831044 0.00307403536088102 0.0410553539907898 0.0022746 1 10356 94.688 38.565 1 41282000 13367 5772.5 13131 6864.7 24064 13683 23709 13651 5248 1718.2 12647 5459.3 13369 7091.3 23752 13413 23645 13746 5961.2 1933.9 1 1 1 1 1 1 1 1 1 1 455 145 393 420 504 504 246 AQISSPNLR 9 Phospho (STY) _AQISS(ph)PNLR_ AQIS(0.449)S(0.551)PNLR AQIS(-0.9)S(0.9)PNLR 0 0 1 0 Q5TCZ1 Q5TCZ1 Q5TCZ1 SH3PXD2A SH3 and PX domain-containing protein 2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.84130859375 2 533.258063 1064.50157 38892.7781622051 2.4331 0.0012975 214870 114.58 214870 114.58 647.839341168514 46.069 0.37872 46.069 45.819 46.198 -7.1054E-15 31 12 3 0.991977486513014 0.00115947176830572 0.0543036050345672 5.3723E-06 1 10623 153.54 105.56 2 12703000 17860 11635 17817 12090 14689 20093 15372 14944 10790 6027.6 16900 10994 17906 12515 15096 19730 15489 15371 10841 6021.6 1 1 1 1 1 1 1 1 1 1 456 1192 394 421 505 505 2084 AQLEPVASPAK 11 Phospho (STY) _AQLEPVAS(ph)PAK_ AQLEPVAS(1)PAK AQLEPVAS(77.56)PAK 0 0 1 0 Q15149 Q15149 Q15149 PLEC Plectin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 550.308288574219 3 397.532078 1189.5744 42277.1012308789 1.4349 0.00057041 384310 152.78 384310 152.78 550.308350131171 56.933 0.55527 56.933 56.693 57.249 0 44 18 4 0.741028497365685 0.00293632713509569 0.0168071517368633 0.0076647 1 13313 77.562 49.941 1 28390000 16029 21089 18904 20956 10369 19405 8128.9 16808 18786 3042.7 15178 19921 18762 21500 11005 19493 8674 17052 18084 3254 1 1 1 1 1 1 1 1 1 1 457 1061 395 422 506 506 1829 AQLSPGIYDDTSAR 14 Phospho (STY) _AQLS(ph)PGIYDDTSAR_ AQLS(1)PGIYDDTSAR AQLS(35.12)PGIY(-49.73)DDT(-35.12)S(-50.98)AR 0 0 1 0 O75376 O75376 O75376 NCOR1 Nuclear receptor corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.433959960938 2 787.348335 1572.68212 32785.4776427307 1.5144 0.0011923 145530 114.58 145530 114.58 901.930761770368 62.265 0.75289 62.265 61.833 62.586 0 76 25 4 0.707215690631979 0.00234965670055042 0.105679785844242 0.00012029 2 14600 124.48 104.82 4 41793000 27333 22779 29882 24779 37701 29064 39855 34306 27366 28878 25873 21529 30042 25389 37816 29061 40123 35078 27532 27986 2 2 2 2 2 2 2 2 2 2 458 180 396 423 507;508 508 310 AQPSMSPK 8 Oxidation (M),Phospho (STY) _AQPSM(ox)S(ph)PK_ AQPSM(1)SPK AQPS(0.069)MS(0.931)PK AQPSM(72.92)SPK AQPS(-11.27)MS(11.27)PK 0 1 1 0 Q969S3 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.357055664063 2 471.193543 940.372533 37887.2636190056 2.6453 0.0012465 486350 229.16 486350 229.16 700.356653907997 30.055 0.53796 30.055 29.806 30.344 3.5527E-15 43 17 3 0.852447841242634 0.00137416240855123 0.0555108979371389 0.014935 1 6681 72.922 43.449 2 23164000 17491 18946 16975 18120 10520 16102 11104 17438 19824 2751.5 16549 17893 17045 18623 11073 16252 11514 17522 19191 2994.4 1 1 1 1 1 1 1 1 1 1 459 1639 397 424 509 509 193 3032 AQPSMSPK 8 Phospho (STY) _AQPSMS(ph)PK_ AQPS(0.021)MS(0.979)PK AQPS(-16.64)MS(16.64)PK 0 0 1 0 Q969S3 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.360473632813 2 463.196086 924.377619 37666.538163938 2.3925 0.0011082 494740 229.16 494750 229.16 692.359095039019 42.271 0.85522 42.271 41.911 42.766 0 102 29 4 0.881906818365365 0.00278816659501711 0.0771577001075184 0.0012903 1 9606 108.3 83.668 2 82604000 39716 42597 41834 45771 28037 40696 29523 40791 49951 7179.7 37589 40258 41836 46721 29307 41033 30540 41129 48420 7704.6 1 1 1 1 1 1 1 1 1 1 460 1639 397 425 510 510 3032 AQQELVPPQQQASPPQLPK 19 Phospho (STY) _AQQELVPPQQQAS(ph)PPQLPK_ AQQELVPPQQQAS(1)PPQLPK AQQELVPPQQQAS(155.11)PPQLPK 0 0 1 0 O15027 O15027 O15027 SEC16A Protein transport protein Sec16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.142028808594 3 722.031454 2163.07253 33921.5661869803 1.5677 0.0011319 211590 152.78 211590 152.78 875.140900274408 70.529 1.6136 70.529 69.878 71.491 0 188 55 5 0.942149897650278 0.00360864958400399 0.0161336360499428 1.1624E-07 2 16640 155.11 139.99 1 55050000 19208 18871 20989 19474 19558 19813 19007 22585 19553 42896 18182 17830 21014 19964 19924 19960 19389 23839 19270 40914 2 2 2 2 2 2 2 2 2 2 461 75 398 426 511;512 512 128 AQSLKAPSIATIK 13 Phospho (STY) _AQS(ph)LKAPSIATIK_ AQS(1)LKAPSIATIK AQS(50.55)LKAPS(-50.55)IAT(-92.82)IK 0 0 1 1 Q6R327 Q6R327 Q6R327 RICTOR Rapamycin-insensitive companion of mTOR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.422973632813 3 469.925087 1406.75343 38599.3926150066 2.216 0.0010414 487660 229.16 487660 229.16 699.088241059932 73.011 0.46361 73.011 72.749 73.213 1.4211E-14 41 15 3 0.899535530054515 0.00179634353712321 0.0395110914104543 6.4016E-07 1 17159 138.97 120.35 3 20884000 16456 15079 16209 16572 15537 18855 14657 16186 18057 7995.2 15570 14253 16326 16962 15797 18779 15055 16580 17673 7903 1 1 1 1 1 1 1 1 1 1 462 1275 399 427 513 513 2271 AQSLVISPPAPSPR 14 Phospho (STY) _AQSLVISPPAPS(ph)PR_ AQSLVISPPAPS(1)PR AQS(-99.12)LVIS(-41.86)PPAPS(41.86)PR 0 0 1 0 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 576.980285644531 3 500.592108 1498.75449 40716.7802089477 1.4322 0.00071694 152590 76.387 152600 76.388 576.979526313129 68.743 1.5424 68.743 67.975 69.517 0 195 52 5 0.963309363498666 0.00386281753479562 0.0531774247424187 6.0367E-05 2 16213 126.8 113.6 3 89010000 11491 9905.5 11580 9488.5 9747.2 11966 9713.1 10329 10189 5293 10874 9355 11633 9807.7 9999.7 11873 9901.8 10584 10034 5223 2 2 2 2 2 2 2 2 2 2 463 603 400 428 514;515 515 980 AQSPTPSLPASWK 13 Phospho (STY) _AQS(ph)PTPSLPASWK_ AQS(0.749)PT(0.251)PSLPASWK AQS(4.75)PT(-4.75)PS(-38.71)LPAS(-124.92)WK 0 0 1 0 Q9UMS6 Q9UMS6 Q9UMS6 SYNPO2 Synaptopodin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.675231933594 3 483.897308 1448.6701 38885.4566666846 1.9454 0.00094139 315720 152.78 315720 152.78 636.672539423639 76.774 0.66854 76.774 76.417 77.085 1.4211E-14 57 22 4 0.938619892171834 0.00480501077517942 0.0955123472858939 4.3646E-07 1 17979 151.04 115.39 4 29252000 17295 2392.7 18781 2981.9 2922.9 18394 3242.5 8981.5 3426.8 4296.4 16371 2263.7 18632 3273.4 3907.2 17639 3290.3 9503.3 3373.4 4253.4 1 1 1 1 1 1 1 1 1 1 464 2199 401 429 516 516 3980 AQSQEDGDYINANYIR 16 Phospho (STY) _AQS(ph)QEDGDYINANYIR_ AQS(1)QEDGDYINANYIR AQS(66.63)QEDGDY(-66.63)INANY(-111.59)IR 0 0 1 0 P35236 P35236 P35236 PTPN7 Tyrosine-protein phosphatase non-receptor type 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1083.99182128906 2 968.907276 1935.8 30137.5782245925 1.1153 0.0010806 118260 114.58 118260 114.58 1083.48898101656 66.018 0.51271 66.018 65.717 66.23 0 33 16 3 0.962766473460505 0.00082246718007257 0.0161539824630901 1.4697E-15 1 15513 216.72 189.62 3 11617000 6905.5 2920 8896.9 2905.5 5791 8815.7 6659.8 7636.3 2530.2 21392 6541.8 2758.3 8807.8 3079.1 6068.5 8598.1 6624.3 8350.1 2671.7 20320 1 1 1 1 1 1 1 1 1 1 465 543 402 430 517 517 876 AQSRSRECDITK 12 2 Phospho (STY) _AQS(ph)RS(ph)RECDITK_ AQS(1)RS(1)RECDITK AQS(55.17)RS(37.8)RECDIT(-37.8)K 0 0 2 2 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.327758789063 3 537.551305 1609.63209 37390.8239953285 1.168 0.00062787 284210 152.78 284210 152.78 690.660574833624 34.586 1.7445 34.586 34.105 35.85 -7.1054E-15 151 59 4 0.979513145920623 0.0029136192368015 0.0141435555912509 0.011079 2 7750 73.928 51.126 3 37428000 39729 51110 43553 52750 56267 43302 55340 51953 53491 10584 37609 48291 43790 53910 56334 43954 56325 52096 52858 11169 2 2 2 2 2 2 2 2 2 2 466 952 403 431 518;519 518 1584;1585 AQSSPASATFPVSVQEPPTKPR 22 Phospho (STY) _AQS(ph)SPASATFPVSVQEPPTKPR_ AQS(0.802)S(0.198)PASATFPVSVQEPPTKPR AQS(6.08)S(-6.08)PAS(-57.75)AT(-100.26)FPVS(-146.59)VQEPPT(-158.76)KPR 0 0 1 1 P56524 P56524 P56524 HDAC4 Histone deacetylase 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.124328613281 4 591.291424 2361.13659 36900.6867315793 1.8366 0.001086 193780 114.58 193780 114.58 706.123599605796 67.391 1.0303 67.391 67.005 68.035 0 131 34 6 0.945536766585531 0.00545538981082306 0.127353507041656 1.2573E-08 2 15791 171.25 156.32 6 34592000 15769 10068 16061 10560 11673 16763 10162 12611 10869 11598 14923 9513.4 16099 10912 12084 16495 10436 13160 10695 11213 2 2 2 2 2 2 2 2 2 2 467 730 404 432 520;521 520 1212 AQSTDSLGTSGSLQSK 16 Phospho (STY) _AQS(ph)TDSLGTSGSLQSK_ AQS(0.777)T(0.218)DS(0.005)LGTSGSLQSK AQS(5.52)T(-5.52)DS(-21.98)LGT(-99.63)S(-127.45)GS(-140.62)LQS(-178.02)K 0 0 1 0 Q15276 Q15276 Q15276 RABEP1 Rab GTPase-binding effector protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.691833496094 3 549.580485 1645.71962 37033.8433866789 1.3106 0.0007203 277990 152.78 277990 152.78 702.690009810036 52.809 0.40919 52.809 52.52 52.929 0 46 13 5 0.98624449813259 0.00449558050244804 0.0455259397478407 1.3179E-10 1 12263 182 153.19 7 46037000 15918 15211 16999 17584 14584 19034 15472 16661 15454 7215 15067 14383 17027 17933 14955 18998 15706 17021 15250 7179.4 1 1 1 1 1 1 1 1 1 1 468 1066 405 433 522 522 1840 AQSVSPVQAPPPGGSAQLLPGK 22 Phospho (STY) _AQSVS(ph)PVQAPPPGGSAQLLPGK_ AQS(0.184)VS(0.816)PVQAPPPGGSAQLLPGK AQS(-6.46)VS(6.46)PVQAPPPGGS(-44.39)AQLLPGK 0 0 1 0 Q96RK0 Q96RK0 Q96RK0 CIC Protein capicua homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.813232421875 3 722.703338 2165.08818 34453.6452682662 1.8937 0.0013686 211390 152.78 211400 152.78 875.480346226511 72.301 0.85416 72.301 71.954 72.809 0 82 28 4 0.684267834816299 0.0016095673445053 0.00944224081066233 0.0072024 1 16977 82.62 63.584 3 15489000 9963.7 10388 11477 10568 9686.3 10722 10175 10481 12385 16389 9433.9 9813.9 11449 10842 9944.4 10768 10394 11016 12127 15675 1 1 1 1 1 1 1 1 1 1 469 1737 406 434 523 523 3186 AQSYDIQAWKK 11 Phospho (STY) _AQS(ph)YDIQAWKK_ AQS(0.931)Y(0.069)DIQAWKK AQS(11.31)Y(-11.31)DIQAWKK 0 0 1 1 Q8WWQ0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.720092773438 3 473.221903 1416.64388 37657.1022395413 2.3224 0.001099 484260 229.16 484260 229.16 702.719338154316 72.884 0.58686 72.884 72.542 73.129 0 46 19 3 0.746136466983699 0.00178455377924635 0.0334879521134216 0.041608 1 17114 46.319 28.653 2 11590000 18117 6708.5 19127 7479.4 9793.6 20634 9621.2 12102 7386 7618.9 17147 6341.7 19087 7843.9 10485 20003 9740.6 12699 7382.5 7454.2 1 1 1 1 1 1 1 1 1 1 470 1577 407 435 524 524 2901 AQTAPTKTSPR 11 Phospho (STY) _AQTAPTKTS(ph)PR_ AQTAPTKT(0.002)S(0.998)PR AQT(-53.63)APT(-39.97)KT(-27.3)S(27.3)PR 0 0 1 1 Q14669 Q14669 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 565.978881835938 3 413.202732 1236.58637 40945.9134633395 1.7222 0.00071161 369730 152.77 369740 152.78 565.977782007261 29.407 0.55725 29.407 29.163 29.721 0 50 18 4 0.968884997489209 0.0148345283510413 0.230317974872374 0.0012901 1 6541 97.767 54.736 4 140450000 51883 28918 45200 25114 40929 49762 38369 40332 26836 3344 49069 27296 45841 26414 41740 48667 38863 40923 26969 4082.2 1 1 1 1 1 1 1 1 1 1 471 1014 408 436 525 525 1721 AQTLPTSVVTITSESSPGKR 20 Phospho (STY) _AQTLPTSVVTITSESS(ph)PGKR_ AQTLPTSVVTITSES(0.198)S(0.802)PGKR AQT(-204.87)LPT(-153.87)S(-155.34)VVT(-109.92)IT(-68.64)S(-45.26)ES(-6.08)S(6.08)PGKR 0 0 1 1 Q01082 Q01082 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.803649902344 3 713.694619 2138.06203 33496.3519268223 2.1621 0.0015431 214060 152.77 214060 152.78 866.803685240448 71.896 0.55996 71.896 71.605 72.165 0 80 18 6 0.958336656549783 0.00705409778478073 0.0685422699912877 4.7325E-23 1 16831 267.47 239.36 8 155570000 8622.6 18400 8772.4 18762 9857.9 8544 10070 12251 20891 15584 8159.8 17384 8838.4 19078 9953 9096 10537 12615 20154 14958 1 1 1 1 1 1 1 1 1 1 472 830 409 437 526 526 1332 AQTPPGPSLSGSK 13 Phospho (STY) _AQT(ph)PPGPSLSGSK_ AQT(1)PPGPSLSGSK AQT(71.87)PPGPS(-71.87)LS(-100.65)GS(-112.87)K 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 588.981872558594 3 436.206142 1305.5966 40236.8046771874 1.177 0.00051342 350240 152.78 350240 152.78 588.981417823879 50.754 1.2996 50.754 49.865 51.165 7.1054E-15 180 44 6 0.772373310610454 0.00349774691548635 0.0474295387077113 8.621E-05 1 11705 126.8 106.34 4 139520000 20205 15060 24008 16086 22861 23979 23403 21360 17180 4133 19133 14233 23943 16580 23269 23658 23626 21652 17215 4386 1 1 1 1 1 1 1 1 1 1 473 2226 410 438 527 527 4033;4819 AQTPPGPSLSGSKSPCPQEK 20 Phospho (STY) _AQTPPGPSLS(ph)GSKSPCPQEK_ AQTPPGPS(0.01)LS(0.774)GS(0.159)KS(0.058)PCPQEK AQT(-41.97)PPGPS(-19)LS(6.88)GS(-6.88)KS(-11.28)PCPQEK 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.159484863281 3 711.660921 2131.96093 33203.9880582659 1.0235 0.00072836 322010 229.16 322010 229.16 941.158301715758 51.788 0.46548 51.788 51.517 51.983 7.1054E-15 50 15 5 0.978805286337297 0.00202653142076205 0.011010106546784 3.7378E-16 1 12020 217.68 188.23 5 59884000 22773 30353 25568 30052 6986.3 24672 8152.8 21150 31777 5274.5 21559 28672 25360 30789 8225.7 24936 8889.7 21510 30353 5456.1 1 1 1 1 1 1 1 1 1 1 474 2226 411 439 528 528 4033;4034;4819 AQTPPGPSLSGSKSPCPQEK 20 2 Phospho (STY) _AQT(ph)PPGPSLSGSKS(ph)PCPQEK_ AQT(1)PPGPSLSGS(0.026)KS(0.974)PCPQEK AQT(95.03)PPGPS(-82.98)LS(-44.49)GS(-15.72)KS(15.72)PCPQEK 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.113403320313 4 553.989093 2211.92726 36153.4901010519 2.2845 0.0012656 310240 171.87 310250 171.87 726.112001487351 54.004 1.1242 54.004 53.235 54.36 0 160 37 6 0.97322156968287 0.00234732967160479 0.0167633631992034 4.2402E-16 1 12508 214.92 183.32 10 155710000 14812 15954 15130 17116 8044.2 14788 8555.2 13849 15980 16402 14017 15078 15131 17466 8595.9 14945 8887.2 14422 15452 15765 1 1 1 1 1 1 1 1 1 1 475 2226 411 440 529 529 4033;4034;4819 AQVAMSTLPVEDEESSESR 19 Acetyl (Protein N-term) _(ac)AQVAMSTLPVEDEESSESR_ 1 0 0 0 P78347 P78347 P78347 GTF2I General transcription factor II-I MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.48022460938 2 1053.97842 2105.94229 28582.3315462395 1.7657 0.001861 -2.5727 -0.0027116 -0.80704 -0.0008506 1053.97362459127 75.35 0.36984 75.35 75.119 75.489 0 35 12 4 0.974451140775446 0.00159729892922483 0.0491217360969095 4.6165E-11 1 17665 127.36 97.612 1 17386000 4960.9 2539.8 4699.3 2472.2 3708.1 4367.5 4349.5 4208.6 2997.8 16751 4693.3 2398.8 4736.1 2573 3829.3 4322.7 4359.6 4732.4 3015.3 15870 1 1 1 1 1 1 1 1 1 1 476 798 412 441 530 530 AQVLATIHGHAGAFPAAGDAGEGAPGGGSSPER 33 Phospho (STY) _AQVLATIHGHAGAFPAAGDAGEGAPGGGS(ph)SPER_ AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.564)S(0.436)PER AQVLAT(-103.15)IHGHAGAFPAAGDAGEGAPGGGS(1.12)S(-1.12)PER 0 0 1 0 Q86WR7 Q86WR7 Q86WR7 PROSER2 Proline and serine-rich protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 831.649658203125 4 774.109811 3092.41014 33203.4896845351 1.7127 0.0013258 74005 57.288 74007 57.289 831.650273656232 67.618 0.5293 67.618 67.387 67.916 0 53 17 4 0.666273030088096 0.00431813824343502 0.0776138556131722 3.5599E-05 1 15862 110.9 99.154 3 25409000 11145 12457 10310 9865.9 7876.3 10082 9255.3 9808.6 10806 26859 10543 11753 10402 10292 8157.6 10143 9397.3 10659 10596 25518 1 1 1 1 1 1 1 1 1 1 477 1392 413 442 531 531 2532 AREGSFESR 9 Phospho (STY) _AREGS(ph)FESR_ AREGS(1)FESR AREGS(44.49)FES(-44.49)R 0 0 1 1 P19174 P19174 P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.316955566406 2 559.734952 1117.45535 38438.5592372086 1.9672 0.0011011 204710 114.58 204710 114.58 674.315825136033 27.741 0.40153 27.741 27.552 27.953 0 28 13 3 0.987752526582429 0.0013992868393715 0.0212038606401177 0.00038564 1 6172 115.65 75.774 2 20026000 12035 18448 11207 16816 12085 9762.5 11929 14172 16485 3796.1 11385 17418 11343 17252 12214 10163 12275 14159 16072 3902.4 1 1 1 1 1 1 1 1 1 1 478 436 414 443 532 532 710 ARGDSEALDEES 12 Unmodified _ARGDSEALDEES_ 0 0 0 1 Q7Z4V5 Q7Z4V5 Q7Z4V5 HDGFRP2 Hepatoma-derived growth factor-related protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.359191894531 2 639.775853 1277.53715 36702.7570816491 1.7625 0.0011276 179100 114.58 179100 114.58 754.356504921275 31.726 0.43625 31.726 31.532 31.969 0 28 14 3 0.982875428798964 0.000572563067223869 0.00542159005768139 2.1799E-07 1 7076 154.84 134.36 1 9493300 8906.2 5815.9 8356.9 5844.1 8864.3 8212.5 7527.3 9355.9 6940.7 3303.1 8425.5 5494.2 8450.2 6036.9 8946.1 8146.7 7710.3 9439.9 6873.3 3326.8 1 1 1 1 1 1 1 1 1 1 479 1343 415 444 533 533 ARGPGGSPGGLQK 13 Phospho (STY) _ARGPGGS(ph)PGGLQK_ ARGPGGS(1)PGGLQK ARGPGGS(84.14)PGGLQK 0 0 1 1 Q96A00 Q96A00 Q96A00 PPP1R14A Protein phosphatase 1 regulatory subunit 14A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 573.982116699219 3 421.206476 1260.5976 40893.4518418793 1.989 0.00083778 362710 152.77 362710 152.78 573.981371366999 39.078 0.55246 39.078 38.784 39.336 0 51 18 5 0.737167442621237 0.00292465936065537 0.030641063108551 0.0059979 1 8863 84.144 60.462 1 20585000 8298.7 19448 8152.1 19262 17791 8644.7 15856 16074 21015 12354 7852.1 18371 8331.5 19618 17463 9255.3 16374 16208 20516 12005 1 1 1 1 1 1 1 1 1 1 480 1641 416 445 534 534 3035 ARGSVSDEEMMELR 14 Acetyl (Protein N-term),Phospho (STY) _(ac)ARGS(ph)VSDEEMMELR_ ARGS(0.863)VS(0.137)DEEMMELR ARGS(7.99)VS(-7.99)DEEMMELR 1 0 1 1 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.361511230469 2 866.357519 1730.70049 33925.0365824716 1.5062 0.0013049 -0.72841 -0.00063106 0.77778 0.00067384 866.357383376583 64.952 1.9216 64.952 64.622 66.544 0 188 65 5 0.879059356917469 0.00130864173234548 0.0325936142094191 5.6183E-23 2 15213 105.08 76.025 2 101480000 13800 12464 13456 12317 13712 14578 15834 16207 13801 30605 13057 11774 13577 12692 13928 14590 15960 17116 13704 29193 2 2 2 2 2 2 2 2 2 2 481 380 417 446 535;536 535 615 ARHDSPDLAPNVTYSLPR 18 Phospho (STY) _ARHDS(ph)PDLAPNVTYSLPR_ ARHDS(1)PDLAPNVTYSLPR ARHDS(118.29)PDLAPNVT(-118.29)Y(-141.7)S(-143.14)LPR 0 0 1 1 Q9BRD0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.723937988281 3 697.000266 2087.97897 35842.53496053 1.566 0.0010915 109590 76.387 109600 76.388 773.387035761743 61.632 1.1896 61.632 61.187 62.376 0 110 40 4 0.984124739256923 0.00308799334558535 0.0382639532438132 5.3531E-11 2 14430 190.61 173.92 4 31637000 17324 19376 21032 18737 18418 20003 20188 20295 20709 21346 16407 18300 20936 19298 18870 20037 20479 20989 20411 20569 2 2 2 2 2 2 2 2 2 2 482 1810 418 447 537;538 538 3320 ARIPSGK 7 Phospho (STY) _ARIPS(ph)GK_ ARIPS(1)GK ARIPS(63.32)GK 0 0 1 1 Q9NTM9 Q9NTM9 Q9NTM9 CUTC Copper homeostasis protein cutC homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 422.915954589844 3 270.140744 807.400403 48374.2364449831 0.10938 2.9549E-05 565540 152.78 565540 152.78 422.916153520859 41.233 0.82463 41.233 40.744 41.569 0 104 28 5 0.914944022082936 0.00367928166367918 0.0914722801486805 0.015113 1 9365 63.32 37.883 1 39832000 54422 23628 56570 21529 51572 53479 51527 44698 24100 2442.6 51505 22309 56778 22747 52604 52073 51701 45249 24943 3334.5 1 1 1 1 1 1 1 1 1 1 483 2033 419 448 539 539 3694 ARLSLVIR 8 Phospho (STY) _ARLS(ph)LVIR_ ARLS(1)LVIR ARLS(70.81)LVIR 0 0 1 1 Q9BQG0 Q9BQG0 Q9BQG0 MYBBP1A Myb-binding protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.87353515625 2 504.291709 1006.56887 40901.2662713253 1.4672 0.00073991 227210 114.58 227210 114.58 618.872920494517 70.826 0.63479 70.826 70.567 71.202 -1.4211E-14 40 21 3 0.990651620972317 0.00107553125364114 0.022354385093972 0.01661 1 16607 70.808 19.372 1 14050000 15266 10544 13525 10087 9331.1 16488 11366 11829 10450 6504.8 14439 9957.8 13672 10487 9744.8 16195 11447 12242 10350 6398.8 1 1 1 1 1 1 1 1 1 1 484 1807 420 449 540 540 3312 ARLSYSDK 8 Phospho (STY) _ARLS(ph)YSDK_ ARLS(0.999)YS(0.001)DK ARLS(28.28)Y(-56.56)S(-28.28)DK 0 0 1 1 Q05655 Q05655 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 493.26611328125 3 340.490102 1018.44848 44628.3191178657 0.94842 0.00032293 448690 152.78 448690 152.78 493.265545019272 45.165 0.63813 45.165 44.798 45.436 0 77 21 5 0.957832215107045 0.0054121843311395 0.0579739467474444 0.00040723 1 10341 122.86 80.306 3 176760000 43532 10708 41972 10190 15688 40122 17671 23338 10422 3669.6 41187 10112 42035 10976 17493 38677 17693 24171 10591 3995.5 1 1 1 1 1 1 1 1 1 1 485 871 421 450 541 541 1415 ARPATDSFDDYPPR 14 Phospho (STY) _ARPATDS(ph)FDDYPPR_ ARPAT(0.007)DS(0.993)FDDYPPR ARPAT(-21.64)DS(21.64)FDDY(-56.09)PPR 0 0 1 1 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 639.629821777344 3 563.241915 1686.70391 39154.9125207778 1.6392 0.00092325 135620 76.387 135620 76.388 639.62894043449 49.467 3.22 49.467 48.123 51.343 0 181 110 2 0.475801623231315 0.00136484082294303 0.0352772234033338 0.001583 1 11435 97.384 79.583 3 22603000 14887 13446 16572 14649 17092 16593 19299 18411 13139 6922.6 14093 12709 16601 14999 17340 16581 19370 18606 13226 6944.6 1 1 1 1 1 1 1 1 1 1 486 468 422 451 542 542 765 ARPFPDGLAEDIDKGEVSAR 20 Unmodified _ARPFPDGLAEDIDKGEVSAR_ 0 0 0 2 P13639 P13639 P13639 EEF2 Elongation factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.608459472656 4 536.524913 2142.07055 40031.3778938102 1.7262 0.00092617 213560 114.58 213560 114.58 651.357087690238 73.028 0.68956 73.028 72.867 73.556 0 43 23 2 0.623942010788327 0.000778353841259437 0.0240509523878336 0.0062129 1 17117 82.037 63.673 1 17768000 6315.4 5912.7 7064.5 5797.4 6033.7 6458.2 7185.1 5815.3 6638.9 4252.9 5978.8 5584.9 7060 5970.3 6199.7 6443.8 7243.6 5986.2 6573.8 4139.2 1 1 1 1 1 1 1 1 1 1 487 378 423 452 543 543 ARPPSGSSK 9 Phospho (STY) _ARPPS(ph)GSSK_ ARPPS(0.999)GS(0.001)SK ARPPS(31.54)GS(-31.54)S(-35.75)K 0 0 1 1 Q7Z2W4 Q7Z2W4 Q7Z2W4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 475.593872070313 3 322.81833 965.43316 46424.6477161379 1.3 0.00041967 473250 152.78 473260 152.78 475.593560263982 28.152 0.7733 28.152 27.779 28.552 3.5527E-15 46 26 3 0.89483870821426 0.00235277631170142 0.070834933814208 0.0081397 1 6272 75.088 60.223 3 9353800 12881 13768 14335 15416 13453 13233 13305 13075 16263 3566.5 12195 13015 14340 15693 13705 13366 13631 13229 15922 3660.9 1 1 1 1 1 1 1 1 1 1 488 1328 424 453 544 544 2377 ARSLPSSPERR 11 2 Phospho (STY) _ARS(ph)LPS(ph)SPERR_ ARS(0.991)LPS(0.819)S(0.19)PERR ARS(19.57)LPS(6.52)S(-6.52)PERR 0 0 2 2 O95685 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.93115234375 3 472.544591 1414.61194 38649.9315303131 1.3388 0.00063263 161660 76.389 161660 76.39 548.933923890626 28.966 0.76284 28.966 28.695 29.458 0 81 25 4 0.732417380271876 0.00399463681250066 0.037906895995343 0.051641 1 6432 41.386 24.061 3 31051000 15375 14516 18954 12023 13166 18289 0 16936 16572 2550.6 14562 13699 18784 12597 13533 18040 0 17118 15648 2793.7 1 1 1 1 1 1 0 1 1 1 489 256 425 454 545 545 429;430 ARSPTDDK 8 Phospho (STY) _ARS(ph)PTDDK_ ARS(0.723)PT(0.277)DDK ARS(4.16)PT(-4.16)DDK 0 0 1 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.368835449219 2 485.205496 968.39644 36900.7402941131 1.6892 0.00081962 472300 229.16 472300 229.16 714.368264977937 26.699 0.63577 26.699 26.394 27.03 0 56 21 4 0.949789928307454 0.00754345527305333 0.0720168179421122 0.0021049 1 5962 99.985 47.406 2 62971000 40746 45157 40388 41141 40219 42740 41988 44648 44694 2222.2 38554 42636 40690 42513 40852 42797 42730 44778 43985 3125.8 1 1 1 1 1 1 1 1 1 1 490 963 426 455 546 546 1619 ARSPTDDKVK 10 Phospho (STY) _ARS(ph)PTDDKVK_ ARS(1)PTDDKVK ARS(35.34)PT(-35.34)DDKVK 0 0 1 2 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 471.769348144531 4 299.897231 1195.55982 44187.8263569791 -0.473 -0.00014185 573100 171.87 573100 171.87 471.769611273745 34.166 0.72822 34.166 33.905 34.633 0 99 24 5 0.997126215410773 0.0212354017285495 0.088291962798601 4.351E-05 1 7650 132.97 89.153 2 421590000 175460 172510 181520 176210 170530 175460 185390 174010 177460 5585 166050 162990 182330 180690 173900 175890 187780 174770 175440 9286 1 1 1 1 1 1 1 1 1 1 491 963 427 456 547 547 1619 ARSRTPPSAPSQSR 14 2 Phospho (STY) _ARS(ph)RT(ph)PPSAPSQSR_ ARS(1)RT(0.998)PPS(0.002)APSQSR ARS(35.58)RT(28.65)PPS(-28.65)APS(-35.21)QS(-34.56)R 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.633728027344 3 553.245092 1656.71345 39360.2588017127 1.9309 0.0010683 138070 76.387 138070 76.388 629.632660677881 22.963 2.0548 22.963 22.111 24.165 -3.5527E-15 232 70 5 0.876395974480118 0.00839615126079101 0.0933201076064884 0.029554 1 5219 64.331 44.239 10 37871000 3206.3 3363 2410.3 3746.4 2808.9 3724.2 2459.4 3201 3023.9 1929.4 3031 3179.1 2477 3822.9 2822.6 3731.1 2535.7 3289.2 2959.7 1890.9 1 1 1 1 1 1 1 1 1 1 492 2226 428 457 548 548 4035;4820 ARSVSPPPK 9 2 Phospho (STY) _ARS(ph)VS(ph)PPPK_ ARS(1)VS(1)PPPK ARS(69.72)VS(69.72)PPPK 0 0 2 1 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 519.605285644531 3 366.829668 1097.46718 43904.9001692136 0.69802 0.00025606 416470 152.78 416480 152.78 519.605023172195 37.372 3.4532 37.372 36.116 39.569 -7.1054E-15 292 122 3 0.994268008979339 0.00236225252743421 0.0340292395041385 0.011144 3 8681 69.716 52.28 1 93984000 75354 58614 83516 57017 63129 78027 65118 69648 65942 9835.4 71335 55362 83381 58979 65296 77186 66212 70483 65030 10873 3 3 3 3 3 3 3 3 3 3 493 940 429 458 549;550;551 551 1551;1552 ARSVSPPPKR 10 2 Phospho (STY) _ARS(ph)VS(ph)PPPKR_ ARS(1)VS(1)PPPKR ARS(91.81)VS(91.81)PPPKR 0 0 2 2 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 571.639465332031 3 418.863372 1253.56829 40848.1468123196 2.1225 0.00088904 364740 152.78 364740 152.78 571.638531902596 30.118 4.1816 30.118 28.987 33.168 0 491 141 5 0.998828681685928 0.0441313445629963 1 0.0038487 3 6780 91.812 77.771 1 273330000 244200 161050 252130 163410 142430 224420 136620 185330 182220 7523.8 231110 152150 252070 168620 150970 221750 140590 187640 177860 11374 3 3 3 3 3 3 3 3 3 3 494 940 430 459 552;553;554 553 1551;1552 ASAALYR 7 Phospho (STY) _AS(ph)AALYR_ AS(1)AALYR AS(44.98)AALY(-44.98)R 0 0 1 0 REV__Q15027 REV__Q15027 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.773742675781 2 416.191661 830.368768 42772.5910340879 1.855 0.00077204 275310 114.58 275310 114.58 530.773075975545 46.006 0.52637 46.006 45.731 46.258 0 46 17 3 0.980769683510805 0.00346858687331378 0.139501157212452 0.01579 1 10599 78.334 27.728 2 49467000 43027 29396 40099 33464 36969 45399 47935 42004 29039 2825.5 40704 27792 40528 34303 37838 44936 47750 42349 29454 3632.6 1 1 1 1 1 1 1 1 1 1 + 495 2333 431 460 555 555 4291 ASAGTPSLSAGVSPK 15 Phospho (STY) _ASAGTPSLSAGVS(ph)PK_ ASAGTPSLSAGVS(1)PK AS(-155.06)AGT(-110.71)PS(-97.18)LS(-59.88)AGVS(59.88)PK 0 0 1 0 Q8TEK3 Q8TEK3 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 934.499694824219 2 705.337239 1408.65992 33324.1427513279 1.7195 0.0012128 324900 229.16 324900 229.16 934.498838779564 57.846 0.25919 57.846 57.704 57.963 0 15 8 2 0.928436168092118 0.000543380194061106 0.00702728467146794 1.03E-15 1 13547 228.9 200.61 5 11211000 33911 13586 32615 13065 16524 35411 18477 22611 13767 11390 32083 12831 32723 13805 17742 34358 18585 23520 13783 11249 1 1 1 1 1 1 1 1 1 1 496 1552 432 461 556 556 2847 ASAISIK 7 Phospho (STY) _ASAIS(ph)IK_ AS(0.001)AIS(0.999)IK AS(-28.81)AIS(28.81)IK 0 0 1 0 Q8WW12 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.359436035156 2 385.196412 768.37827 40823.6030887096 1.5982 0.00061563 594920 229.16 594930 229.16 614.359365438468 60.414 0.52346 60.414 60.223 60.747 0 29 17 2 0.705479327710045 0.00135919327590795 0.106966747403685 0.03414 1 14172 59.067 15.298 2 10285000 22396 16998 24320 18395 12501 22553 13416 17469 18746 4880.1 21199 16065 24235 18869 13402 22366 13759 17867 18271 4999.5 1 1 1 1 1 1 1 1 1 1 497 1574 433 462 557 557 2886 ASAPERTPSPAPK 13 2 Phospho (STY) _ASAPERT(ph)PS(ph)PAPK_ AS(0.023)APERT(0.978)PS(0.998)PAPK AS(-16.55)APERT(16.55)PS(28.12)PAPK 0 0 2 1 Q63ZY6 Q63ZY6 Q63ZY6 NSUN5P2 Putative methyltransferase NSUN5C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.988708496094 3 490.212618 1467.61602 39728.0908590535 1.2343 0.00060505 311650 152.77 311650 152.78 642.987689842016 34.663 1.3696 34.663 34.282 35.651 0 81 46 3 0.95672907953237 0.00155704027053645 0.0106868701571988 0.020515 1 7778 79.311 49.983 3 13602000 12782 13103 13472 12362 9648.3 13905 9836.3 12124 12813 2962.9 12098 12374 13479 12763 10022 13852 10085 12319 12517 3070.5 1 1 1 1 1 1 1 1 1 1 498 1220 434 463 558 558 2147;4613 ASAPSPNAQVACDHCLK 17 Phospho (STY) _ASAPS(ph)PNAQVACDHCLK_ AS(0.023)APS(0.977)PNAQVACDHCLK AS(-16.23)APS(16.23)PNAQVACDHCLK 0 0 1 0 Q14258 Q14258 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.382690429688 3 635.93762 1904.79103 34801.4752743757 1.1691 0.00074348 240240 152.77 240240 152.78 789.047109597953 48.125 0.64519 48.125 47.889 48.534 7.1054E-15 84 21 6 0.960331007799693 0.00431337881347614 0.0211419654503888 0.011369 1 11139 70.453 47.006 2 146190000 28024 19818 30320 23983 17825 30120 19268 24840 23336 31079 26526 18745 30249 24470 18851 29909 19655 26058 22853 29839 1 1 1 1 1 1 1 1 1 1 499 1005 435 464 559 559 1706 ASASPSTSSTSSRPK 15 Phospho (STY) _ASAS(ph)PSTSSTSSRPK_ AS(0.077)AS(0.883)PS(0.038)T(0.001)SSTSSRPK AS(-10.59)AS(10.59)PS(-13.62)T(-28.46)S(-50.02)S(-62.07)T(-81.12)S(-93.24)S(-104.15)RPK 0 0 1 1 O75167 O75167 O75167 PHACTR2 Phosphatase and actin regulator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.674438476563 3 510.898037 1529.67228 39048.0242122979 1.6999 0.0008685 299030 152.78 299030 152.78 663.673412258762 27.215 0.29041 27.215 27.06 27.35 3.5527E-15 24 9 3 0.973196186249336 0.00312105006863169 0.0224856272454427 1.0662E-07 1 6065 171.04 154.31 9 19675000 7056.8 6491.7 7573.2 7029.6 13395 6228.9 16753 11183 6477.2 1775.4 6679.5 6135.6 7673.7 7172.1 13287 6344.7 16611 11079 6826.9 1930.6 1 1 1 1 1 1 1 1 1 1 500 172 436 465 560 560 298 ASAVSELSPR 10 Phospho (STY) _ASAVSELS(ph)PR_ ASAVSELS(1)PR AS(-92.65)AVS(-53.65)ELS(53.65)PR 0 0 1 0 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.33837890625 2 548.755353 1095.49615 38301.4801181262 0.81851 0.00044916 208800 114.58 208800 114.58 663.336831069817 47.463 1.9626 47.463 46.66 48.623 0 231 71 5 0.955784071685516 0.00456149287690129 0.0515364250834839 0.00018881 2 10897 123.2 83.05 3 3171900000 63012 64282 63481 63180 82908 62303 89124 70816 65818 46627 59628 60718 64144 64924 83054 62683 89784 72108 65931 45544 2 2 2 2 2 2 2 2 2 2 501 2257 437 466 561;562 561 4169 ASAVSPANLPAVLLQPR 17 Acetyl (Protein N-term),Phospho (STY) _(ac)ASAVS(ph)PANLPAVLLQPR_ AS(0.011)AVS(0.989)PANLPAVLLQPR AS(-19.53)AVS(19.53)PANLPAVLLQPR 1 0 1 0 P51610 P51610 P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.324584960938 3 609.323909 1824.9499 40018.694972018 1.0361 0.00063131 -0.26353 -0.00016058 0.77256 0.00047074 609.323683378788 101.91 0.16939 101.91 101.82 101.99 0 17 5 5 0.986414520658434 0.00643107823507963 0.132880420687844 6.4981E-08 1 24002 80.975 67.547 2 43829000 1194.7 539.32 1087.9 1192.9 1453 1204.8 1010.1 1524.1 1466.5 6756 1130.1 513.21 1105.2 1185.1 1447.2 1223.8 1062 1719.9 1427.7 6396.9 1 1 1 1 1 1 1 1 1 1 502 681 438 467 563 563 1140 ASCASIDIEDATQHLR 16 Acetyl (Protein N-term),Phospho (STY) _(ac)ASCAS(ph)IDIEDATQHLR_ AS(0.05)CAS(0.95)IDIEDATQHLR AS(-12.8)CAS(12.8)IDIEDAT(-83.82)QHLR 1 0 1 0 Q6P2E9 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.913208007813 2 954.911505 1907.80846 31071.3262005021 1.4424 0.0013774 -0.58136 -0.00055514 0.86108 0.00082226 954.91215078266 78.923 0.47054 78.923 78.693 79.164 0 35 15 3 0.989369621656895 0.000488299447161531 0.0130498145857939 2.2914E-16 1 18505 149.3 120.53 3 13776000 4046.9 4183.6 4931.2 3436.6 4840.4 3410.1 5143.1 5133.3 4615.6 27535 3832.8 3947.8 4914 3573.8 4921.2 3492.7 5206.3 5912 4576.6 26047 1 1 1 1 1 1 1 1 1 1 503 1258 439 468 564 564 2230 ASDKDITVSK 10 Phospho (STY) _AS(ph)DKDITVSK_ AS(1)DKDITVSK AS(45.1)DKDIT(-45.1)VS(-68.84)K 0 0 1 1 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 611.01171875 3 381.847955 1142.52203 40050.3164681591 1.6686 0.00063716 600140 229.16 600140 229.16 611.011151951485 52.252 0.77192 52.252 51.983 52.755 0 80 26 4 0.904914360511611 0.00589633282146265 0.0397429968393311 5.499E-05 1 12147 131.24 99.712 3 90407000 69073 38191 68367 39087 39403 70205 45988 51032 37981 5230.6 65358 36083 68540 40578 41782 68751 46277 52089 37815 6106.3 1 1 1 1 1 1 1 1 1 1 504 654 440 469 565 565 1084 ASDLEDEESAAR 12 Phospho (STY) _AS(ph)DLEDEESAAR_ AS(1)DLEDEESAAR AS(46.11)DLEDEES(-46.11)AAR 0 0 1 0 Q86VM9 Q86VM9 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.852966308594 2 686.766843 1371.51913 35723.9158193133 1.3923 0.00095621 166840 114.58 166840 114.58 801.348165546989 48.676 0.92237 48.676 48.246 49.169 0 67 31 3 0.91187134613248 0.000735708962228747 0.00814185596178189 0.00014619 1 11274 117.27 81.773 2 37481000 16897 22336 16044 23128 18810 17898 17277 18618 24536 19533 15985 21105 16235 23615 18910 18219 17859 19236 23902 18824 1 1 1 1 1 1 1 1 1 1 505 1380 441 470 566 566 2495 ASDPGLPAEEPK 12 Phospho (STY) _AS(ph)DPGLPAEEPK_ AS(1)DPGLPAEEPK AS(133.47)DPGLPAEEPK 0 0 1 0 P27708 P27708 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.633911132813 3 430.858631 1289.55406 39623.1687069134 1.4495 0.00062453 354590 152.78 354590 152.78 583.633993319861 56.111 0.50399 56.111 55.95 56.454 0 29 16 2 0.834022198812182 0.00203558542591077 0.0365578541508616 2.1607E-05 1 13115 133.47 99.509 1 18944000 10866 12976 11528 12444 13920 10322 12895 12581 14232 3833.3 10284 12255 11597 12776 13972 10476 13211 12648 13986 3900.7 1 1 1 1 1 1 1 1 1 1 506 489 442 471 567 567 801 ASDPGLPAEEPKEK 14 Phospho (STY) _AS(ph)DPGLPAEEPKEK_ AS(1)DPGLPAEEPKEK AS(133.93)DPGLPAEEPKEK 0 0 1 1 P27708 P27708 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.736206054688 3 516.571149 1546.69162 37683.2220092104 2.701 0.0013952 443620 229.16 443630 229.16 746.068087340177 53.833 0.40596 53.833 53.625 54.031 7.1054E-15 30 13 3 0.731183658502654 0.000994243203438092 0.0109361036241975 2.4406E-05 1 12560 133.93 102.29 1 9682900 15914 16495 16298 17356 18462 17837 20762 17788 18092 29755 15061 15587 16420 17775 18637 17913 20950 18741 17965 28430 1 1 1 1 1 1 1 1 1 1 507 489 443 472 568 568 801 ASDPQSPPQVSR 12 Phospho (STY) _ASDPQS(ph)PPQVSR_ ASDPQS(1)PPQVSR AS(-82.72)DPQS(48.95)PPQVS(-48.95)R 0 0 1 0 Q7L7X3 Q7L7X3 Q7L7X3 TAOK1 Serine/threonine-protein kinase TAO1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.380798339844 2 674.798281 1347.58201 35948.8813705097 1.7699 0.0011943 169800 114.58 169800 114.58 789.379938015728 33.548 0.59641 33.548 33.309 33.905 0 34 20 3 0.976468845036848 0.000382939840100734 0.00785191398249844 3.4971E-07 1 7526 156.6 115.2 3 8894200 10888 10320 10399 9583.6 8954.7 11624 8849.3 10105 10426 3227.5 10301 9744.6 10482 9917.9 9172.6 11548 9056 10292 10220 3273 1 1 1 1 1 1 1 1 1 1 508 1320 444 473 569 569 2366 ASDSMDSLYSGQSSSSGITSCSDGTSNR 28 Oxidation (M),Phospho (STY) _ASDS(ph)M(ox)DSLYSGQSSSSGITSCSDGTSNR_ ASDSM(1)DSLYSGQSSSSGITSCSDGTSNR AS(0.046)DS(0.94)MDS(0.014)LYSGQSSSSGITSCSDGTSNR ASDSM(228.03)DSLYSGQSSSSGITSCSDGTSNR AS(-13.1)DS(13.1)MDS(-18.3)LY(-60.31)S(-66.56)GQS(-130.93)S(-150.86)S(-150.86)S(-161.51)GIT(-174.89)S(-182.5)CS(-189.65)DGT(-205.26)S(-208.07)NR 0 1 1 0 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1057.76733398438 3 980.709616 2939.10702 30522.9626495031 1.736 0.0017025 77890 76.387 77892 76.389 1057.43149672557 49.096 0.74822 49.096 48.824 49.572 0 111 25 6 0.985204161902388 0.00376140273194542 0.0262077454865895 8.4303E-18 1 11369 228.03 214.76 14 57137000 305.54 1575.7 1380.8 1571.5 2899.6 998.12 2884.2 2152.8 2541.3 11681 293.15 1488.5 1347.1 1604.6 2852.3 1062.5 2927.2 2466.6 2522.1 11049 1 1 1 1 1 1 1 1 1 1 509 2028 445 474 570 570 216 3684 ASDSMDSLYSGQSSSSGITSCSDGTSNR 28 Phospho (STY) _ASDS(ph)MDSLYSGQSSSSGITSCSDGTSNR_ AS(0.042)DS(0.955)MDS(0.003)LYSGQSSSSGITSCSDGTSNR AS(-13.54)DS(13.54)MDS(-25.29)LY(-89.29)S(-92.01)GQS(-178.54)S(-198.71)S(-202.74)S(-208.34)GIT(-224.31)S(-229.34)CS(-238.95)DGT(-258.32)S(-261.29)NR 0 0 1 0 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1052.10095214844 3 975.377978 2923.1121 30706.0325388331 1.147 0.0011188 78316 76.388 78317 76.389 1052.09993624402 58.923 0.93008 58.923 58.636 59.566 0 151 31 7 0.909208113327329 0.00843632423035265 0.0697884129064532 6.1676E-34 1 13778 298.28 282.56 14 159970000 2170.4 4819.4 2637.1 3846.9 5767.9 3096 7236.8 4343.6 5164 34391 2055.5 4547.2 2669.7 3997.2 5687.2 3217.2 7239.1 5344.9 5183.3 32484 1 1 1 1 1 1 1 1 1 1 510 2028 445 475 571 571 3684 ASEDTTSGSPPK 12 Phospho (STY) _ASEDTTSGS(ph)PPK_ ASEDT(0.165)T(0.165)S(0.236)GS(0.433)PPK AS(-47.65)EDT(-4.19)T(-4.19)S(-2.64)GS(2.64)PPK 0 0 1 0 Q9BZZ5 Q9BZZ5 Q9BZZ5 API5 Apoptosis inhibitor 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 857.920715332031 2 628.755747 1255.49694 33324.1417593614 1.6945 0.0010655 364470 229.16 364470 229.16 857.918754287708 33.972 0.635 33.972 33.556 34.191 0 64 21 4 0.976401880291043 0.000844672739362176 0.030233738736427 3.3647E-07 1 7552 157.33 136.91 5 32299000 15036 18019 15826 14745 13332 16961 16055 14771 17318 4898.1 14230 17003 15865 15375 13716 16883 16246 15049 17034 4954 1 1 1 1 1 1 1 1 1 1 511 1880 446 476 572 572 3419 ASEDTTSGSPPKK 13 Phospho (STY) _ASEDTTSGS(ph)PPKK_ ASEDTTSGS(1)PPKK AS(-88.2)EDT(-56.51)T(-43.46)S(-36.71)GS(36.71)PPKK 0 0 1 1 Q9BZZ5 Q9BZZ5 Q9BZZ5 API5 Apoptosis inhibitor 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.369506835938 3 462.204578 1383.5919 37324.592778448 1.947 0.0008999 495800 229.16 495810 229.16 691.36824333735 35.346 1.3646 35.346 34.428 35.793 0 188 46 6 0.999522487854969 0.012929265322928 0.0758875697645598 5.6523E-05 2 7894 128.11 96.041 5 351040000 270340 270020 281640 262130 224630 267970 217540 255260 284030 16329 255850 255030 282230 269730 231290 268210 223590 257030 277430 21283 2 2 2 2 2 2 2 2 2 2 512 1880 447 477 573;574 573 3419 ASEENLLSSSSVPSADRDSSPTTNSK 26 Phospho (STY) _ASEENLLSSSSVPSADRDS(ph)SPTTNSK_ ASEENLLSSSS(0.001)VPS(0.011)ADRDS(0.546)S(0.301)PT(0.108)T(0.029)NS(0.005)K AS(-89.5)EENLLS(-65.97)S(-48.33)S(-44.18)S(-29.01)VPS(-17.15)ADRDS(2.6)S(-2.6)PT(-7.06)T(-12.74)NS(-20.15)K 0 0 1 1 Q9NRA8 Q9NRA8 Q9NRA8 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.14013671875 4 687.306728 2745.19781 34468.4005446326 2.0301 0.0013953 166710 114.58 166720 114.59 802.141427248182 60.239 0.66141 60.239 59.967 60.628 0 57 22 4 0.775168303150696 0.00148624578612284 0.00953674304948286 0.00010272 1 14107 108.9 83.488 11 14659000 9050 11320 9434.9 10170 8920.9 8732.1 7082 8695.5 10422 6972.6 8565 10687 9468.5 10490 9060.5 8829.5 7388.7 8933.8 10142 6766.8 1 1 1 1 1 1 1 1 1 1 513 2014 449 478 575 575 3659 ASEGLDACASPTK 13 Phospho (STY) _ASEGLDACAS(ph)PTK_ ASEGLDACAS(0.991)PT(0.009)K AS(-53.01)EGLDACAS(20.36)PT(-20.36)K 0 0 1 0 Q92618 Q92618 Q92618 ZNF516 Zinc finger protein 516 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.449951171875 2 693.783982 1385.55341 32285.1510549308 1.2564 0.00087168 330310 229.16 330310 229.16 922.948201810127 48.29 0.38146 48.29 48.094 48.475 0 29 12 4 0.980871654821952 0.000814497726520815 0.0201568108964195 6.567E-05 1 11198 130.2 97.978 3 14157000 30388 4943 34381 4498.6 7210.6 34743 6581.3 16117 4528.2 6198.4 28770 4666.9 34056 5132.1 8910.8 33253 6673.2 17075 4555.1 6209.6 1 1 1 1 1 1 1 1 1 1 514 1611 450 479 576 576 2968 ASEIDQVVPAAQSSPINCEK 20 Phospho (STY) _ASEIDQVVPAAQSS(ph)PINCEK_ ASEIDQVVPAAQS(0.06)S(0.94)PINCEK AS(-126.44)EIDQVVPAAQS(-11.93)S(11.93)PINCEK 0 0 1 0 O94782 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.783203125 3 741.671486 2221.99263 33074.1290898015 1.7363 0.0012878 205990 152.78 205990 152.78 894.780979977184 70.888 0.54999 70.888 70.567 71.117 0 71 18 5 0.980967435824993 0.00259264461107347 0.0384445197061441 1.7814E-10 1 16606 175.99 149.78 3 37255000 7232.1 8585.6 6686 10589 7858.7 8313.7 6970.7 8862.2 9633 15574 6841.3 8121.9 6776.5 10714 7895.8 8471 7211.1 9337.4 9391.9 14870 1 1 1 1 1 1 1 1 1 1 515 217 451 480 577 577 375 ASEKPVSPK 9 Phospho (STY) _ASEKPVS(ph)PK_ ASEKPVS(1)PK AS(-37.03)EKPVS(37.03)PK 0 0 1 1 Q14155 Q14155 Q14155 ARHGEF7 Rho guanine nucleotide exchange factor 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 571.000122070313 3 341.502119 1021.48453 41683.9510063691 1.8766 0.00064087 671040 229.16 671040 229.16 570.664864973433 39.535 0.89302 39.535 39.141 40.034 0 92 30 5 0.95924591886744 0.00743586275896228 0.0534561224016913 0.00673 1 8950 79.875 44.352 2 80429000 43284 23439 46108 28044 25632 39407 26991 33076 29532 2729.6 40969 22169 46018 28697 27242 38919 27479 33505 29031 3335.7 1 1 1 1 1 1 1 1 1 1 516 991 452 481 578 578 1674 ASEPLLSPPPFGESR 15 Phospho (STY) _ASEPLLS(ph)PPPFGESR_ ASEPLLS(1)PPPFGESR AS(-67.77)EPLLS(67.77)PPPFGES(-89.25)R 0 0 1 0 O14686 O14686 O14686 KMT2D Histone-lysine N-methyltransferase 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 946.973693847656 2 832.390003 1662.76545 32268.6218435324 1.9522 0.001625 137650 114.58 137660 114.58 947.472818633112 81.989 0.7756 81.989 81.682 82.458 0 76 26 4 0.739531642861793 0.00198076151332497 0.0950998264689698 7.5026E-12 1 19181 212.5 180 3 20743000 8207.2 9881.6 6759 10663 8472.2 7793.3 10240 10227 12054 41953 7760.7 9339.2 6913.5 10855 8523.2 8049.2 10388 11428 11817 39740 1 1 1 1 1 1 1 1 1 1 517 63 453 482 579 579 103 ASEVEEILDGNDEK 14 Unmodified _ASEVEEILDGNDEK_ 0 0 0 0 Q12824 Q12824 Q12824 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.686462402344 3 516.573897 1546.69986 38838.0522656065 2.006 0.0010363 295750 152.78 295750 152.78 669.349646565418 84.511 0.53497 84.511 84.187 84.721 0 47 18 4 0.969387847755491 0.00309558163398432 0.0544756870029784 8.5804E-07 1 19745 143.76 126.81 1 8247100 6611.5 6130.7 5631.2 5689.5 6062.3 6695.9 6556.5 6776.7 6063.2 8487.7 6252.5 5789 5732.8 5884.9 6133.1 6683.7 6636.7 7050.2 6003.5 8149 1 1 1 1 1 1 1 1 1 1 518 903 454 483 580 580 ASFETLPNISDLCLR 15 Phospho (STY) _AS(ph)FETLPNISDLCLR_ AS(0.903)FET(0.097)LPNISDLCLR AS(9.68)FET(-9.68)LPNIS(-51.02)DLCLR 0 0 1 0 Q9H019 Q9H019 Q9H019 MTFR1L Mitochondrial fission regulator 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.672973632813 3 605.949743 1814.8274 37880.1203795568 1.5 0.00090895 126060 76.387 126060 76.388 682.671762977432 100.58 0.13968 100.58 100.51 100.65 0 7 4 2 0.357195119506374 0.000130985041272994 0.00321977650630953 0.028674 1 23545 54.253 32.719 3 28697000 6053.4 11261 6855.1 12519 5463.7 7394.4 5536.3 8332 12310 15960 5731.1 10645 6839.7 12695 5634.2 7682.3 5817.5 8802.2 11859 15222 1 1 1 1 1 1 1 1 1 1 519 1896 455 484 581 581 3450 ASGDPGASGMSPR 13 Oxidation (M),Phospho (STY) _ASGDPGASGM(ox)S(ph)PR_ ASGDPGASGM(1)SPR ASGDPGASGMS(1)PR ASGDPGASGM(144.97)SPR AS(-100.77)GDPGAS(-52.32)GMS(52.32)PR 0 1 1 0 Q8NDT2 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.830078125 2 643.247566 1284.48058 36081.6948496858 1.6739 0.0010768 178130 114.58 178130 114.58 757.829578958702 24.926 0.3794 24.926 24.802 25.181 0 31 12 4 0.990530466451058 0.00174024799103513 0.0342625023602082 7.8677E-07 1 5579 144.97 88.03 3 9642400 4879.2 3713.1 5192.1 3114.9 4829.8 5327.5 5523.1 4632.4 3676.1 1849.5 4618.2 3504.2 5207.1 3270.3 4930.8 5236 5538.2 4729.3 3705.5 1848.7 1 1 1 1 1 1 1 1 1 1 520 1508 456 485 582 582 177 2769 ASGEMASAQYITAALR 16 Oxidation (M),Phospho (STY) _AS(ph)GEM(ox)ASAQYITAALR_ ASGEM(1)ASAQYITAALR AS(1)GEMASAQYITAALR ASGEM(120.08)ASAQYITAALR AS(38.47)GEMAS(-38.47)AQY(-77.21)IT(-86.03)AALR 0 1 1 0 P54578 P54578 P54578 USP14 Ubiquitin carboxyl-terminal hydrolase 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 982.973693847656 2 868.389677 1734.7648 30136.8105622701 1.8994 0.0016494 131950 114.58 131950 114.59 983.47667631948 81.87 0.52284 81.87 81.593 82.116 0 27 17 2 0.733381033166721 0.00131338216655469 0.0473563812413808 9.5738E-05 1 19156 120.08 99.124 4 10440000 5669.9 7694.1 5117.2 6679 5801.8 5865.8 6598.4 6231.7 7422.8 27190 5363.1 7262.6 5194.4 6906.7 5859.3 5971.6 6700.9 7056 7289.1 25747 1 1 1 1 1 1 1 1 1 1 521 711 457 486 583 583 92 1191 ASGEMASAQYITAALR 16 Phospho (STY) _AS(ph)GEMASAQYITAALR_ AS(1)GEMASAQYITAALR AS(75.73)GEMAS(-75.73)AQY(-157.57)IT(-178.38)AALR 0 0 1 0 P54578 P54578 P54578 USP14 Ubiquitin carboxyl-terminal hydrolase 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.652648925781 3 573.930572 1718.76989 39058.8444109311 1.7257 0.00099043 133090 76.387 133100 76.388 650.317803814403 93.356 0.58427 93.356 93.06 93.644 -1.4211E-14 63 19 4 0.983509906234789 0.00561165960594613 0.108119822327703 3.4491E-11 1 21706 205.15 180.28 4 36797000 3258 3940.8 3110.4 3628 2802.8 3226 3431.6 3870.4 4033 10513 3082.3 3721 3137.9 3737.7 2871.9 3279.4 3479.4 4174.1 3953.9 9988.9 1 1 1 1 1 1 1 1 1 1 522 711 457 487 584 584 1191 ASGQAFELILSPR 13 Phospho (STY) _ASGQAFELILS(ph)PR_ ASGQAFELILS(1)PR AS(-118.79)GQAFELILS(118.79)PR 0 0 1 0 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 566.63232421875 3 490.244708 1467.71229 41291.4220168814 1.726 0.00084618 155810 76.387 155820 76.388 566.632462972674 92.962 2.9147 92.962 92.254 95.168 1.4211E-14 354 100 6 0.979260262522086 0.00250101473105764 0.0881050351021441 5.9569E-06 2 21528 137.52 113.27 2 395850000 3157.2 4129.9 3308 4160.3 2954.2 3134.7 2997 3225.3 4098.2 6552.4 2988.1 3901.6 3318.1 4253.3 3020.5 3201.4 3078.8 3429.2 3997 6244.5 2 2 2 2 2 2 2 2 2 2 523 411 458 488 585;586 585 658;659 ASGQAFELILSPR 13 Phospho (STY) _ASGQAFELILS(ph)PR_ ASGQAFELILS(1)PR AS(-134.49)GQAFELILS(134.49)PR 0 0 1 0 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.446472167969 2 734.863424 1467.71229 34097.5753321475 1.908 0.0014021 155920 114.58 155920 114.58 849.444643900768 92.953 2.7716 92.953 92.281 95.053 -1.4211E-14 316 95 6 0.998603262761959 0.0251409162328742 1 6.1634E-16 2 21704 233.14 212.35 2 449380000 112740 90959 105870 93130 31756 112680 36946 77983 101330 56534 106660 85938 106100 95805 36736 111740 39122 81271 97254 55039 2 2 2 2 2 2 2 2 2 2 524 411 458 488 587;588 587 658;659 ASGQAFELILSPR 13 Phospho (STY) _AS(ph)GQAFELILSPR_ AS(1)GQAFELILSPR AS(82.73)GQAFELILS(-82.73)PR 0 0 1 0 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.447021484375 2 734.863424 1467.71229 34000.7241282035 1.4869 0.0010926 155920 114.58 155920 114.58 849.445188728547 99.075 0.85879 99.075 98.691 99.55 1.4211E-14 102 29 5 0.840597448455714 0.00448449899775924 0.424564253782653 4.5539E-07 1 22948 160.43 116.53 2 137310000 9662.6 13297 9102.3 13250 15233 8385.5 15831 14276 15435 77407 9141.2 12561 9273.9 13529 15105 8842 16075 16424 15246 73218 1 1 1 1 1 1 1 1 1 1 525 411 458 488 589 589 658;659 ASGSENEGDYNPGR 14 Phospho (STY) _ASGS(ph)ENEGDYNPGR_ ASGS(1)ENEGDYNPGR AS(-57.37)GS(57.37)ENEGDY(-134.8)NPGR 0 0 1 0 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.370178222656 2 766.786099 1531.55764 33317.317097085 1.7719 0.0013587 149430 114.58 149430 114.58 881.367894582937 31.975 0.65392 31.975 31.73 32.384 3.5527E-15 57 21 4 0.98516813494033 0.00160859480863958 0.0932291138779151 2.7817E-31 1 7141 298.7 265.84 3 16268000 8610.4 10379 8877 10241 22496 8190.3 22338 15679 11212 1626 8148.7 9803.8 9089.7 10490 22013 8398 22441 15486 11535 1894 1 1 1 1 1 1 1 1 1 1 526 855 459 489 590 590 1377;1378 ASGSENEGDYNPGRK 15 Phospho (STY) _ASGS(ph)ENEGDYNPGRK_ AS(0.001)GS(0.999)ENEGDYNPGRK AS(-30.48)GS(30.48)ENEGDY(-73.81)NPGRK 0 0 1 1 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.334838867188 3 554.224812 1659.65261 37502.6164184966 1.2228 0.0006777 275660 152.78 275660 152.78 707.000241206122 35.896 0.66927 35.896 35.591 36.26 0 76 22 5 0.935829833758565 0.00765993602416947 0.0468078477981512 5.3706E-07 1 8073 154.55 134.74 3 73154000 27785 29715 27511 31501 71483 31986 78803 46805 36946 5165.9 26291 28081 28270 32244 70009 32235 78717 46530 38230 5947.5 1 1 1 1 1 1 1 1 1 1 527 855 460 490 591 591 1377;1378 ASGVAVSDGVIK 12 Acetyl (Protein N-term),Phospho (STY) _(ac)AS(ph)GVAVSDGVIK_ AS(1)GVAVSDGVIK AS(44.34)GVAVS(-44.34)DGVIK 1 0 1 0 P23528 P23528 P23528 CFL1 Cofilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.380310058594 2 612.797218 1223.57988 36575.040318325 1.9269 0.0011808 186980 114.58 186980 114.58 727.378928584473 72.501 1.853 72.501 71.986 73.839 0 151 63 5 0.931037732657033 0.0163162088065666 0.281286655567958 4.4949E-08 1 16997 94.692 82.164 2 331130000 56970 105130 51330 88742 97286 56717 105110 93961 104890 8973 53887 99221 52588 91603 96123 58763 106610 93076 103510 10624 1 1 1 1 1 1 1 1 1 1 528 467 461 491 592 592 762 ASGYQSSQKK 10 Phospho (STY) _ASGYQSS(ph)QKK_ ASGYQS(0.014)S(0.986)QKK AS(-68.24)GY(-81.5)QS(-18.34)S(18.34)QKK 0 0 1 1 P51858 P51858 P51858 HDGF Hepatoma-derived growth factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.671752929688 3 388.507932 1162.50197 40201.1320911674 0.92128 0.00035792 589850 229.16 589850 229.16 617.670785767136 34.567 0.55252 34.567 34.221 34.774 0 46 16 4 0.981435755034638 0.00967054783145182 0.0719954522894005 0.00022489 1 7743 111.83 80.192 4 106200000 43819 43482 44888 41320 106210 51689 121990 75218 40392 3321.6 41468 41063 45919 42725 104310 51649 121180 74637 43316 4868.5 1 1 1 1 1 1 1 1 1 1 529 684 462 492 593 593 1151 ASHLRPPSPLLVR 13 Acetyl (Protein N-term),Phospho (STY) _(ac)ASHLRPPS(ph)PLLVR_ ASHLRPPS(1)PLLVR AS(-39.7)HLRPPS(39.7)PLLVR 1 0 1 1 Q8TDB6 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 522.283752441406 3 522.283497 1563.82866 43337.2547689528 0.87905 0.00045911 -0.26552 -0.00013868 0.61353 0.00032044 522.283330004148 67.288 1.1607 67.288 66.544 67.705 0 128 39 4 0.971073234410321 0.00324552945622877 0.0595493633087442 7.067E-11 1 15738 103.67 80.145 2 35055000 3173.5 3121.9 3789.7 2798.6 3881.4 3392.5 2969.5 3143.6 3352 1365.6 3005.2 2947.3 3780 2902.8 3920.9 3373.4 3077 3204 3291.2 1358.7 1 1 1 1 1 1 1 1 1 1 530 1547 463 493 594 594 2840 ASIANSDGPTAGSQTPPFK 19 Phospho (STY) _ASIANSDGPTAGSQT(ph)PPFK_ ASIANSDGPTAGS(0.005)QT(0.995)PPFK AS(-126.81)IANS(-109.05)DGPT(-65.25)AGS(-22.64)QT(22.64)PPFK 0 0 1 0 O75167 O75167 O75167 PHACTR2 Phosphatase and actin regulator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.405334472656 3 642.626205 1924.85679 35208.2924337782 2.1002 0.0013496 237740 152.78 237740 152.78 795.735520599753 66.343 0.76812 66.343 65.836 66.604 0 99 25 5 0.921428683813049 0.00178451197212843 0.0558752483884152 2.1756E-07 1 15555 151.16 124.35 5 19179000 10748 7111.8 10393 8024.2 10649 11347 10702 11807 7473.5 24820 10169 6723.4 10489 8236.7 10789 11278 10803 12573 7511 23644 1 1 1 1 1 1 1 1 1 1 531 172 464 494 595 595 4336 ASIGQSPGLPSTTFK 15 Phospho (STY) _ASIGQS(ph)PGLPSTTFK_ ASIGQS(0.999)PGLPSTTFK AS(-33.11)IGQS(33.11)PGLPS(-35.69)T(-57.56)T(-64.58)FK 0 0 1 0 Q5VT52 Q5VT52 Q5VT52 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.031982421875 3 524.255273 1569.74399 37287.6612551659 1.6162 0.00084729 291410 152.78 291420 152.78 677.030363687004 75.675 0.69465 75.675 75.37 76.065 0 52 23 3 0.95475739506711 0.00819707255407377 0.383296145376639 0.00012108 1 17732 111.66 90.201 5 71125000 14626 12020 15672 13317 9786 13539 9826.5 11461 11842 5433.1 13844 11363 15649 13598 10281 13545 10056 11741 11599 5381.2 1 1 1 1 1 1 1 1 1 1 532 1201 465 495 596 596 2100 ASINSLLSDKR 11 Phospho (STY) _AS(ph)INSLLSDKR_ AS(0.996)INS(0.004)LLSDKR AS(24.27)INS(-24.27)LLS(-46.65)DKR 0 0 1 1 Q04656 Q04656 Q04656 ATP7A Copper-transporting ATPase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.326049804688 3 428.55002 1282.62823 41920.4997197304 1.9044 0.00081615 356490 152.77 356490 152.78 581.325017205031 74.822 0.49066 74.822 74.57 75.061 0 46 16 4 0.780165986734128 0.00268746388897002 0.0718798616747836 0.0087024 1 17553 78.038 49.232 3 13314000 4266.1 8821.7 5027.9 9131.5 9191.7 4218.8 8425.3 8525.4 10624 2808.6 4039.7 8335.3 5068.5 9278.1 9073.1 4507.3 8673.3 8469.3 10389 2841.9 1 1 1 1 1 1 1 1 1 1 533 862 466 496 597 597 1397 ASKEMFEDTVEER 13 Acetyl (Protein N-term),Phospho (STY) _(ac)AS(ph)KEMFEDTVEER_ AS(1)KEMFEDTVEER AS(57.72)KEMFEDT(-57.72)VEER 1 0 1 1 Q16576 Q16576 Q16576 RBBP7 Histone-binding protein RBBP7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 961.430053710938 2 846.844768 1691.67498 31485.3932369182 1.8818 0.0015936 135300 114.58 135310 114.58 961.425937927648 71.742 0.52615 71.742 71.521 72.047 0 49 17 4 0.866787806915861 0.00109256538121001 0.0209100776060573 2.7354E-07 1 16829 88.596 43.905 2 20579000 8291.3 10778 8255.9 9872 28328 7994.4 27432 15598 9008.5 37799 7845.5 10176 8559.3 10161 27532 8263.5 27462 16490 9670.1 35953 1 1 1 1 1 1 1 1 1 1 534 1108 467 497 598 598 1928 ASKSQDRK 8 Phospho (STY) _ASKS(ph)QDRK_ AS(0.018)KS(0.982)QDRK AS(-17.46)KS(17.46)QDRK 0 0 1 2 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 562.991577148438 3 333.825484 998.454623 41475.5443875143 2.0799 0.00069433 686480 229.16 686480 229.16 562.98861751515 26.02 0.77949 26.02 25.815 26.595 0 90 26 5 0.992022913003847 0.015084564070944 0.0585734650005963 0.009156 1 5784 86.911 53.02 2 104990000 19903 23670 20601 23320 16153 19408 18301 20277 23585 6203.6 18836 22359 20654 23903 16690 19651 18671 20493 23048 6310.7 1 1 1 1 1 1 1 1 1 1 535 1076 468 498 599 599 1861 ASLEDAPVDDLTR 13 Phospho (STY) _AS(ph)LEDAPVDDLTR_ AS(1)LEDAPVDDLTR AS(98.12)LEDAPVDDLT(-98.12)R 0 0 1 0 Q7Z2W4 Q7Z2W4 Q7Z2W4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 856.417724609375 2 741.329611 1480.64467 34294.7261404436 1.7779 0.001318 154560 114.58 154560 114.58 855.91222423658 72.897 0.63618 72.897 72.663 73.3 1.4211E-14 54 21 3 0.777084286485972 0.0007834834837372 0.0313021502197128 9.6963E-05 1 17086 126.09 82.778 2 24680000 12649 11637 11884 12788 22552 11152 24162 18630 13234 28316 11966 10999 12145 13034 22269 11398 24219 19250 13522 27094 1 1 1 1 1 1 1 1 1 1 536 1328 469 499 600 600 2378 ASLEVSRSPR 10 Acetyl (Protein N-term),Phospho (STY) _(ac)ASLEVSRS(ph)PR_ ASLEVS(0.025)RS(0.975)PR AS(-110.16)LEVS(-15.99)RS(15.99)PR 1 0 1 1 O60762 O60762 O60762 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 612.292846679688 2 612.292634 1222.57072 40378.5084153498 1.024 0.00062701 -0.037924 -2.3221E-05 0.98611 0.00060379 612.292586227791 39.868 0.90428 39.868 39.48 40.384 0 80 30 4 0.897568228028219 0.00910188168667121 0.364780195705337 6.1894E-10 1 9030 130.99 87.909 3 180070000 24154 12118 28346 11970 13114 22851 14115 11989 10515 2256.7 22872 11447 28117 12474 14218 22287 14221 12514 10528 2402.4 1 1 1 1 1 1 1 1 1 1 537 155 470 500 601 601 262;263 ASLEVSRSPRR 11 Acetyl (Protein N-term),Phospho (STY) _(ac)ASLEVS(ph)RSPRR_ ASLEVS(0.595)RS(0.404)PRR AS(-33.92)LEVS(1.68)RS(-1.68)PRR 1 0 1 2 O60762 O60762 O60762 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.343994140625 2 690.34319 1378.67183 38006.3433885131 1.4829 0.0010237 0.19559 0.00013503 1.6785 0.0011587 690.344079402814 32.947 0.43297 32.947 32.707 33.14 0 44 14 4 0.838634139516858 0.00168352966676488 0.0387170300658055 0.00021862 1 7348 56.936 28.84 3 38388000 9772.4 11814 11255 11609 11404 10885 11257 11337 12391 3567.7 9252.8 11159 11250 11921 11563 10955 11497 11462 12178 3621.8 1 1 1 1 1 1 1 1 1 1 538 155 471 501 602 602 262;263 ASLGPAAAGEQASGAEAEPGPAGPPPPPSPSSLGPLLPLQR 41 Acetyl (Protein N-term),Phospho (STY) _(ac)ASLGPAAAGEQASGAEAEPGPAGPPPPPS(ph)PSSLGPLLPLQR_ ASLGPAAAGEQASGAEAEPGPAGPPPPPS(0.862)PS(0.102)S(0.036)LGPLLPLQR AS(-36.38)LGPAAAGEQAS(-36.38)GAEAEPGPAGPPPPPS(9.28)PS(-9.28)S(-13.78)LGPLLPLQR 1 0 1 0 Q9H0C5 Q9H0C5 Q9H0C5 BTBD1 BTB/POZ domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 980.740112304688 4 980.487292 3917.92006 31144.4190162327 0.82877 0.0008126 0.80273 0.00078707 1.6315 0.0015997 980.98932288018 101.23 0.22858 101.23 101.13 101.36 0 22 7 5 0.875143996027121 0.00657180858197358 0.120503498043849 9.9268E-06 1 23767 77.858 66.335 5 54306000 2654.5 2844.7 2457.9 3011.8 2557.9 3106.5 2461.6 3019.3 3421.4 32625 2511.1 2688.3 2487.3 3083.7 2589.4 3169.9 2536.6 4015 3335.2 30790 1 1 1 1 1 1 1 1 1 1 539 1900 472 502 603 603 3455 ASLGSLEGEAEAEASSPK 18 Phospho (STY) _ASLGSLEGEAEAEASS(ph)PK_ ASLGSLEGEAEAEAS(0.017)S(0.983)PK AS(-187.65)LGS(-183.64)LEGEAEAEAS(-17.67)S(17.67)PK 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.04541015625 3 604.934816 1811.78262 35603.3003230242 2.1338 0.0012908 252550 152.77 252550 152.78 758.04411999839 75.396 0.85611 75.396 74.918 75.774 0 77 29 4 0.954255614216098 0.0053651179903077 0.0783291669042957 1.0616E-11 1 17673 208.89 189.57 4 20429000 9444.2 7237.2 9801.9 7858 4112.6 10740 4085.1 8065.9 7230.2 12042 8938 6840.2 9779.7 8076.7 4511.9 10626 4245.8 8557.2 7000.6 11526 1 1 1 1 1 1 1 1 1 1 540 896 473 503 604 604 1459;1460 ASLGSLEGEAEAEASSPK 18 Phospho (STY) _ASLGS(ph)LEGEAEAEASSPK_ AS(0.015)LGS(0.985)LEGEAEAEASSPK AS(-18.19)LGS(18.19)LEGEAEAEAS(-214.86)S(-218.77)PK 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.046325683594 3 604.934816 1811.78262 35199.5821365598 1.8501 0.0011192 252550 152.78 252550 152.78 758.045005010898 83.522 0.66656 83.522 83.204 83.87 0 90 22 5 0.994615312857238 0.0184098013546641 0.371966322436212 1.7284E-16 1 19510 242.59 195.76 4 62402000 16822 17619 19405 17443 5151.7 17181 3076.2 13814 16372 101820 15927 16643 19213 17917 6052.7 17383 3595.1 17055 15591 96196 1 1 1 1 1 1 1 1 1 1 541 896 473 503 605 605 1459;1460 ASLPQAATFGELSGPLKPGSPYRPPVPR 28 Phospho (STY) _ASLPQAATFGELSGPLKPGS(ph)PYRPPVPR_ ASLPQAATFGELSGPLKPGS(1)PYRPPVPR AS(-252.19)LPQAAT(-155.66)FGELS(-67.12)GPLKPGS(67.12)PY(-148.15)RPPVPR 0 0 1 2 Q14687 Q14687 Q14687 GSE1 Genetic suppressor element 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 858.220458984375 4 743.386387 2969.51644 34128.2881410009 1.6645 0.0012374 154130 114.58 154140 114.58 858.218424685727 87.465 0.73684 87.465 87.171 87.908 0 94 24 6 0.950382374329116 0.00597301312750557 0.0618442463191732 5.5495E-44 1 20395 337.85 308.43 5 51589000 5454.2 17670 5761.4 15845 5663.7 5988 4528.7 9374.3 18157 13295 5162.3 16682 5780.4 16223 5750.1 6509.5 5037.5 9672.5 17338 12736 1 1 1 1 1 1 1 1 1 1 542 1022 474 504 606 606 1744 ASLPQAATFGELSGPLKPGSPYRPPVPR 28 Phospho (STY) _ASLPQAATFGELSGPLKPGS(ph)PYRPPVPR_ ASLPQAATFGELSGPLKPGS(1)PYRPPVPR AS(-194.85)LPQAAT(-104.29)FGELS(-43.02)GPLKPGS(43.02)PY(-106.32)RPPVPR 0 0 1 2 Q14687 Q14687 Q14687 GSE1 Genetic suppressor element 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.77880859375 5 594.910565 2969.51644 38674.1858789916 1.6236 0.00096587 154080 91.666 154080 91.667 686.976886651468 87.486 0.35349 87.486 87.322 87.675 0 34 11 4 0.768714862832157 0.00105367336670907 0.0119906035261796 4.857E-18 1 20438 233 212.8 5 9022800 2089.8 4206.4 1976.2 3964.5 1600.5 3028.3 2162.7 3314.6 3416.5 8252.1 1977 3972.2 1992.9 4070.4 1655.5 3096.3 2208.8 3562.3 3317.9 7847 1 1 1 1 1 1 1 1 1 1 543 1022 474 504 607 607 1744 ASLSLAPVNIFK 12 Acetyl (Protein N-term),Phospho (STY) _(ac)AS(ph)LSLAPVNIFK_ AS(0.824)LS(0.176)LAPVNIFK AS(6.72)LS(-6.72)LAPVNIFK 1 0 1 0 P78371 P78371 P78371 CCT2 T-complex protein 1 subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.942626953125 2 691.359986 1380.70542 34544.6444751342 1.7853 0.0012343 165730 114.58 165730 114.58 806.439766400959 103.45 0.11295 103.45 103.38 103.49 0 6 3 2 0.540800138366594 0.000807454640312742 0.0186101764970713 4.9282E-05 1 24388 56.432 34.284 2 7844600 4933.8 6158.4 5232.6 5571 5086.3 5934.2 5081 6402.6 6669.9 12271 4669.7 5814.3 5250 5761.8 5171.7 5961 5215.8 6773.9 6513.8 11703 1 1 1 1 1 1 1 1 1 1 544 800 475 505 608 608 1278 ASMSEFLESEDGEVEQQR 18 Phospho (STY) _ASMSEFLES(ph)EDGEVEQQR_ ASMSEFLES(1)EDGEVEQQR AS(-69.55)MS(-60.42)EFLES(60.42)EDGEVEQQR 0 0 1 0 Q15022 Q15022 Q15022 SUZ12 Polycomb protein SUZ12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.348449707031 3 717.624313 2149.85111 35437.0990146728 1.8379 0.0013189 106450 76.388 106450 76.39 794.347731308692 78.44 0.68918 78.44 78.176 78.865 0 59 23 4 0.571025073104915 0.00298154934118376 0.0659538006149154 3.1393E-05 1 18364 121.93 108.61 3 9302000 8775.7 8073.5 10650 7912.8 8333.1 11451 10221 8661.6 9364 18789 8311.1 7625.8 10592 8191.2 8619.1 11320 10290 9362.4 9275.8 17893 1 1 1 1 1 1 1 1 1 1 545 1045 476 506 609 609 1805 ASPAPGSGHPEGPGAHLDMNSLDR 24 Oxidation (M),Phospho (STY) _AS(ph)PAPGSGHPEGPGAHLDM(ox)NSLDR_ ASPAPGSGHPEGPGAHLDM(1)NSLDR AS(1)PAPGSGHPEGPGAHLDMNSLDR ASPAPGSGHPEGPGAHLDM(195.23)NSLDR AS(39.55)PAPGS(-39.55)GHPEGPGAHLDMNS(-150.89)LDR 0 1 1 0 O94826 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.809814453125 4 617.268052 2465.0431 37654.170095928 1.748 0.001079 92813 57.291 92815 57.292 674.558805830053 41.874 0.53924 41.874 41.626 42.165 7.1054E-15 49 18 3 0.960400770551852 0.00359061517494091 0.0252933897279392 2.9044E-12 1 9548 195.23 178.83 3 45348000 8794 8350.7 8598.1 9794.8 8547.8 10725 10035 9757.9 9313.1 4591.9 8320.6 7896.8 8671.2 9983.8 8697.6 10705 10124 9963.7 9219.8 4549.6 1 1 1 1 1 1 1 1 1 1 546 221 477 507 610 610 18 383 ASPAPGSGHPEGPGAHLDMNSLDR 24 Phospho (STY) _AS(ph)PAPGSGHPEGPGAHLDMNSLDR_ AS(0.996)PAPGS(0.004)GHPEGPGAHLDMNSLDR AS(24.09)PAPGS(-24.09)GHPEGPGAHLDMNS(-130.52)LDR 0 0 1 0 O94826 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.079406738281 3 817.356672 2449.04819 32790.5780129419 1.8437 0.001507 93454 76.386 93456 76.387 894.076682514209 53.625 0.82352 53.625 53.266 54.089 0 113 27 6 0.984287622123692 0.00483742321820093 0.0313138370657244 1.7316E-18 1 12464 246.35 207.2 3 89806000 13085 16019 15174 13612 12146 18627 24942 23698 17312 11007 12390 15119 15146 14203 12679 18531 24565 23906 17406 10913 1 1 1 1 1 1 1 1 1 1 547 221 477 508 611 611 383 ASPEPPGPESSSR 13 Phospho (STY) _AS(ph)PEPPGPESSSR_ AS(1)PEPPGPESSSR AS(125.99)PEPPGPES(-125.99)S(-136.86)S(-145.04)R 0 0 1 0 Q9C0C2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 803.870788574219 2 689.287746 1376.56094 35928.1993808142 1.8536 0.0012777 166230 114.58 166230 114.58 803.86933517149 32.953 0.43221 32.953 32.736 33.168 0 31 14 3 0.961439587447267 0.000617829439777954 0.0242966098340866 1.2322E-15 1 7375 215.61 178.1 4 8083300 8487.9 7727.6 8328.3 7339.6 7337.3 8908.1 7615.7 8040.5 8577.6 2732.3 8031.2 7297.8 8383.7 7585 7509.2 8853.3 7765.1 8181.2 8422.7 2758.9 1 1 1 1 1 1 1 1 1 1 548 1885 478 509 612 612 3430 ASPFSVESLLSDSPPR 16 Phospho (STY) _ASPFSVESLLSDS(ph)PPR_ ASPFSVESLLS(0.111)DS(0.889)PPR AS(-124.46)PFS(-114.86)VES(-60.25)LLS(-9.03)DS(9.03)PPR 0 0 1 0 A6NJT0 A6NJT0 A6NJT0 UNCX Homeobox protein unc-4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.665283203125 3 590.276625 1767.80805 38622.6767088545 2.0011 0.0011812 129410 76.387 129410 76.389 666.663930659193 100.42 0.27973 100.42 100.31 100.59 0 22 9 5 0.923008278221158 0.000787381018440018 0.00905925627440399 4.6516E-07 1 23485 147.49 124.09 5 18319000 5051.4 4455.2 5517.8 4037.9 4514.5 5934.2 4275.7 5278.1 4079.4 12343 4781.7 4206.3 5516.6 4201.9 4637 5878.5 4358.4 5691.6 4033.4 11744 1 1 1 1 1 1 1 1 1 1 549 12 479 510 613 613 24 ASPGKDNYR 9 Acetyl (Protein N-term),Phospho (STY) _(ac)AS(ph)PGKDNYR_ AS(1)PGKDNYR AS(71.47)PGKDNY(-71.47)R 1 0 1 1 O15131 O15131 O15131 KPNA5 Importin subunit alpha-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.819641113281 2 565.237328 1128.4601 38329.9283813426 1.7518 0.00099018 202710 114.58 202720 114.58 679.81885789295 32.75 0.4407 32.75 32.557 32.997 0 38 14 3 0.988923498576194 0.00254640758950927 0.0533060999316148 0.00027505 1 7314 75.213 60.546 2 50525000 19662 31735 22162 27229 24256 21932 23865 26112 30518 4070 18614 29954 22197 28148 24492 22280 24493 26153 29830 4436.8 1 1 1 1 1 1 1 1 1 1 550 81 480 511 614 614 143 ASPGLLPVANGNSLNK 16 Phospho (STY) _AS(ph)PGLLPVANGNSLNK_ AS(1)PGLLPVANGNSLNK AS(99.7)PGLLPVANGNS(-99.7)LNK 0 0 1 0 Q14814 Q14814 Q14814 MEF2D Myocyte-specific enhancer factor 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.719665527344 3 544.609938 1630.80799 38125.4032075576 2.0883 0.0011373 280520 152.78 280520 152.78 697.384993676772 79.1 0.44138 79.1 78.865 79.307 0 36 14 3 0.738387321080153 0.00126752612511559 0.0113673890909972 7.5437E-05 1 18539 117.4 89.073 2 11428000 13344 5543.3 15178 5196.4 4586.3 12948 5268.2 8176.7 5756.5 5978.4 12633 5234.5 15050 5481.2 5289.7 12583 5343.2 8566.9 5659.2 5818.6 1 1 1 1 1 1 1 1 1 1 551 1029 481 512 615 615 1761 ASPIKMDLAPSK 12 Phospho (STY) _AS(ph)PIKMDLAPSK_ AS(1)PIKMDLAPSK AS(66.68)PIKMDLAPS(-66.68)K 0 0 1 1 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.054382324219 3 446.556006 1336.64619 37407.6700708226 2.2165 0.00098979 513180 229.16 513180 229.16 675.718912401749 71.079 0.51674 71.079 70.855 71.372 1.4211E-14 44 17 3 0.897304797817027 0.00383647575384867 0.0387591565606892 0.00014334 1 16702 103.13 76.162 2 41256000 17251 35058 18874 36682 18370 23000 20453 27999 39880 10462 16330 33128 18909 37345 18720 23747 21251 28206 38525 10499 1 1 1 1 1 1 1 1 1 1 552 491 482 513 616 616 804 ASPPGDLQNPK 11 Phospho (STY) _AS(ph)PPGDLQNPK_ AS(1)PPGDLQNPK AS(50.16)PPGDLQNPK 0 0 1 0 O00273 O00273 O00273 DFFA DNA fragmentation factor subunit alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 554.964416503906 3 401.851699 1202.53327 41713.439085143 1.0805 0.00043421 380180 152.78 380180 152.78 554.627165624826 50.467 1.1545 50.467 50.07 51.225 -7.1054E-15 92 39 4 0.801782184168146 0.00126853406234966 0.0154220507794781 0.030727 1 11737 50.155 20.682 1 15372000 9138.6 12855 10107 14735 10114 10770 9535.6 11818 15568 2024.4 8651.1 12154 10121 14951 10260 10990 9899.3 11874 15106 2179.8 1 1 1 1 1 1 1 1 1 1 553 40 483 514 617 617 63 ASPPPQGPLPGPPGALHR 18 Phospho (STY) _AS(ph)PPPQGPLPGPPGALHR_ AS(1)PPPQGPLPGPPGALHR AS(133.84)PPPQGPLPGPPGALHR 0 0 1 0 Q96G74 Q96G74 Q96G74 OTUD5 OTU domain-containing protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.032531738281 3 609.308482 1824.90362 38069.2428494096 1.4528 0.0008852 125370 76.389 125370 76.39 686.031532669456 58.139 1.2277 58.139 57.732 58.96 0 150 41 5 0.969179210651609 0.00779594710429123 0.07623565358264 9.2527E-06 1 13596 133.84 115.25 1 73167000 18820 21266 23407 18601 16582 20090 13627 22024 17566 7450 17826 20074 23217 19285 17192 20109 14121 22242 17165 7524.8 1 1 1 1 1 1 1 1 1 1 554 1682 484 515 618 618 3096 ASPSKPASAPASR 13 Phospho (STY) _AS(ph)PSKPASAPASR_ AS(0.994)PS(0.006)KPASAPASR AS(22.27)PS(-22.27)KPAS(-69.15)APAS(-112.65)R 0 0 1 1 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 588.985778808594 3 436.209886 1305.60783 40512.4748156097 2.0166 0.00087964 350230 152.77 350230 152.78 588.984769918182 30.828 0.47885 30.828 30.611 31.09 0 44 15 4 0.982084940275513 0.0124776801829706 0.369096325919513 2.5831E-07 1 6883 161.08 127.93 4 64253000 25263 46753 27769 46053 20941 28609 22609 34884 51615 2106.9 23915 44162 27737 47048 21705 29537 23728 34811 49698 2791.2 1 1 1 1 1 1 1 1 1 1 555 491 485 516 619 619 805 ASPSLERPEK 10 Acetyl (Protein N-term),Phospho (STY) _(ac)AS(ph)PSLERPEK_ AS(0.989)PS(0.011)LERPEK AS(19.54)PS(-19.54)LERPEK 1 0 1 1 Q13601 Q13601 Q13601 KRR1 KRR1 small subunit processome component homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.869262695313 2 618.287018 1234.55948 35372.1615908304 1.9142 0.0011835 185320 114.58 185320 114.58 732.868671984301 44.667 0.57557 44.667 44.344 44.919 0 73 19 5 0.959631497610404 0.00201993984702285 0.0550465283216211 4.4068E-05 1 10221 66.435 38.26 2 197080000 43026 34223 46603 35469 22081 43342 23812 35182 35008 6478.7 40727 32336 46424 36469 23891 43002 24462 35802 34068 6914.7 1 1 1 1 1 1 1 1 1 1 556 971 486 517 620 620 1646 ASPSPPPKR 9 2 Phospho (STY) _AS(ph)PS(ph)PPPKR_ AS(1)PS(1)PPPKR AS(67.15)PS(67.15)PPPKR 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 518.934265136719 3 366.157785 1095.45153 42635.4939356655 1.3783 0.00050466 417240 152.78 417240 152.78 518.933606702588 30.113 1.751 30.113 29.488 31.239 -3.5527E-15 101 58 2 0.843018674016189 0.00215451503392032 0.0547091211217425 0.0095523 2 6713 67.153 43.302 1 16313000 26933 30415 27552 33605 25857 30456 27869 28668 30665 3860.3 25488 28750 27691 34259 26371 30653 28348 28942 30138 4298.4 2 2 2 2 2 2 2 2 2 2 557 1436 487 518 621;622 621 2623;2624 ASPSPQPSSQPLQIHR 16 Phospho (STY) _ASPS(ph)PQPSSQPLQIHR_ AS(0.188)PS(0.812)PQPSSQPLQIHR AS(-6.35)PS(6.35)PQPS(-52.76)S(-68.96)QPLQIHR 0 0 1 0 Q9HC35 Q9HC35 Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.347290039063 3 603.95963 1808.85706 37609.7182063725 1.3977 0.00084416 126480 76.386 126480 76.387 680.346347968523 44.416 1.041 44.416 43.668 44.71 7.1054E-15 66 35 3 0.555215392637043 0.0016535658245933 0.0210267941675431 3.1516E-05 1 10213 129.89 115.2 4 20600000 14568 19386 15561 17078 23468 18177 26430 18407 17107 8600.4 13788 18300 15714 17693 23381 18190 26506 18714 17275 8524.3 1 1 1 1 1 1 1 1 1 1 558 1981 488 519 623 623 3598 ASPVTTSPTAATTQNPVLSK 20 Phospho (STY) _ASPVTT(ph)SPTAATTQNPVLSK_ AS(0.001)PVT(0.058)T(0.465)S(0.465)PT(0.011)AATTQNPVLSK AS(-25.09)PVT(-9.06)T(0)S(0)PT(-16.38)AAT(-62.5)T(-65.94)QNPVLS(-114.2)K 0 0 1 0 Q96JN0 Q96JN0 Q96JN0 LCOR Ligand-dependent corepressor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.452819824219 3 684.340065 2049.99837 34545.0240764774 2.4534 0.001679 223240 152.78 223250 152.78 837.449710046557 68.502 0.5465 68.502 68.185 68.732 -1.4211E-14 69 18 5 0.985921586392565 0.0042471494029305 0.0513155704329252 1.9029E-05 1 16056 132.26 107.96 8 26316000 10518 11773 10410 11946 10538 10790 9664.8 11715 12683 14625 9952.6 11122 10488 12237 10676 10907 9962.5 12155 12387 14042 1 1 1 1 1 1 1 1 1 1 559 1701 489 520 624 624 3136;4729 ASQSRPNSSALETLGGEK 18 Phospho (STY) _ASQSRPNS(ph)SALETLGGEK_ AS(0.001)QS(0.004)RPNS(0.935)S(0.06)ALETLGGEK AS(-28.58)QS(-23.69)RPNS(11.93)S(-11.93)ALET(-62.78)LGGEK 0 0 1 1 O94804 O94804 O94804 STK10 Serine/threonine-protein kinase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.073913574219 3 637.96511 1910.8735 35401.9879440455 2.0903 0.0013335 239470 152.78 239480 152.78 791.074902158457 58.547 0.37741 58.547 58.321 58.698 0 31 12 3 0.884682699742101 0.00199932458019589 0.0253907774442075 2.2819E-07 1 13712 142.23 100.36 5 15268000 26069 12945 27703 13107 14168 29182 14669 21339 14409 8178.3 24674 12229 27636 13706 15184 28450 14901 21955 14228 8194.7 1 1 1 1 1 1 1 1 1 1 560 218 490 521 625 625 376;377 ASQSRPNSSALETLGGEK 18 Phospho (STY) _ASQS(ph)RPNSSALETLGGEK_ AS(0.332)QS(0.66)RPNS(0.003)S(0.005)ALETLGGEK AS(-2.97)QS(2.97)RPNS(-23.12)S(-21.37)ALET(-66.17)LGGEK 0 0 1 1 O94804 O94804 O94804 STK10 Serine/threonine-protein kinase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.742004394531 3 637.96511 1910.8735 35563.4163940546 2.0059 0.0012797 239470 152.78 239480 152.78 790.742065164011 59.223 0.55122 59.223 58.932 59.483 0 38 18 3 0.71027560690864 0.00150063512555022 0.0390847305954638 1.9222E-05 1 13901 128.36 87.274 5 12191000 22556 11011 23712 11260 14130 24869 14651 17510 12211 11069 21348 10404 23694 11765 14910 24248 14822 18182 12152 10828 1 1 1 1 1 1 1 1 1 1 561 218 490 521 626 626 376;377 ASREESWESGR 11 Phospho (STY) _ASREES(ph)WESGR_ ASREES(1)WESGR AS(-38.62)REES(36.14)WES(-36.14)GR 0 0 1 1 Q9NQ29 Q9NQ29 Q9NQ29 LUC7L Putative RNA-binding protein Luc7-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.359008789063 2 687.277713 1372.54087 36706.76693744 1.1783 0.0008098 166720 114.58 166720 114.58 801.857336515221 34.104 0.3765 34.104 33.905 34.282 0 25 12 3 0.976734167459828 0.000843126335621956 0.0308645791255455 0.01221 1 7629 76.233 61.295 3 20793000 10925 9314.5 8823.4 10738 14357 10241 15016 11660 11167 3716.3 10330 8807.2 9074.4 10930 14249 10312 15148 11753 11181 3769.2 1 1 1 1 1 1 1 1 1 1 562 2000 491 522 627 627 3630 ASSCETYEYPQR 12 Phospho (STY) _ASS(ph)CETYEYPQR_ AS(0.023)S(0.977)CETYEYPQR AS(-16.21)S(16.21)CET(-64.86)Y(-136.82)EY(-159.17)PQR 0 0 1 0 Q9UQC2 Q9UQC2 Q9UQC2 GAB2 GRB2-associated-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 900.380981445313 2 785.79762 1569.58069 31133.9582125118 1.8727 0.0014716 145810 114.58 145820 114.58 900.37918965508 42.469 0.82917 42.469 42.054 42.883 -7.1054E-15 62 28 3 0.978584581386492 0.000878460361553341 0.034934567122639 5.9062E-31 1 9654 297.56 284.8 5 26157000 15466 15237 13856 14708 12147 14989 14456 15649 15808 5143.4 14629 14391 14029 15139 12461 15029 14641 15827 15541 5205.3 1 1 1 1 1 1 1 1 1 1 563 2229 492 523 628 628 4121 ASSDIQVK 8 Acetyl (Protein N-term),Phospho (STY) _(ac)AS(ph)SDIQVK_ AS(0.5)S(0.5)DIQVK AS(0)S(0)DIQVK 1 0 1 0 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.796325683594 2 485.218072 968.421592 39379.5477885592 0.77872 0.00037785 236140 114.58 236140 114.58 599.796862957627 52.981 2.1761 52.981 52.155 54.331 0 94 62 2 0.923009599286914 0.000719919214841363 0.00542928113791405 0.00073967 1 12332 59.205 50.865 2 72580000 106160 31215 124570 29920 79569 108820 73361 85720 35240 9180 100530 29480 123810 32068 83281 105280 73929 87155 36388 10628 1 1 1 1 1 1 1 1 1 1 564 411 493 524 629 629 660;661 ASSEDTLNKPGSTAASGVVR 20 Phospho (STY) _ASS(ph)EDTLNKPGSTAASGVVR_ AS(0.01)S(0.99)EDTLNKPGSTAASGVVR AS(-20.02)S(20.02)EDT(-43.26)LNKPGS(-121.65)T(-126.41)AAS(-179.16)GVVR 0 0 1 1 Q5M775 Q5M775 Q5M775 SPECC1 Cytospin-B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.096313476563 3 676.319552 2025.93683 34326.7033983803 2.5096 0.0016973 225890 152.78 225890 152.78 829.429154817329 51.32 0.5535 51.32 51.051 51.604 0 74 18 5 0.989442730987998 0.00522205480100443 0.0510925333066436 3.2404E-23 1 11911 271.55 226.82 6 118570000 54468 11855 54249 11737 40691 57303 42222 39337 13250 26791 51540 11198 54475 12790 42088 55229 42112 40961 14302 26137 1 1 1 1 1 1 1 1 1 1 565 1173 494 525 630 630 2030 ASSFADMMGILK 12 Phospho (STY) _AS(ph)SFADMMGILK_ AS(0.601)S(0.399)FADMMGILK AS(1.78)S(-1.78)FADMMGILK 0 0 1 0 Q9H019 Q9H019 Q9H019 MTFR1L Mitochondrial fission regulator 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.640197753906 3 450.865963 1349.57606 41845.7973029007 0.62406 0.00028137 338850 152.78 338850 152.78 603.640855770799 101.41 0.22663 101.41 101.33 101.56 -1.4211E-14 21 7 4 0.930064777467051 0.00129504000045654 0.0424300548668991 3.7215E-08 1 23863 172.57 141.92 2 28718000 4260.8 5199.4 4473.5 6314.3 7105.3 4004.5 6422.5 5642.7 5735.9 30045 4032.6 4918 4523.3 6378.2 7044.8 4194.1 6551.6 6501.9 5688.7 28421 1 1 1 1 1 1 1 1 1 1 566 1896 495 526 631 631 3451 ASSFSGISILTR 12 Phospho (STY) _ASS(ph)FSGISILTR_ AS(0.009)S(0.991)FSGISILTR AS(-20.41)S(20.41)FS(-35.67)GIS(-79.74)ILT(-100.24)R 0 0 1 0 Q9Y2K5 Q9Y2K5 Q9Y2K5 R3HDM2 R3H domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.405517578125 2 659.823767 1317.63298 35548.597019647 1.9464 0.0012843 173650 114.58 173660 114.58 774.404808336476 90.569 0.80443 90.569 90.192 90.996 0 86 27 5 0.876541753003127 0.00291078602038405 0.207116701632759 5.3008E-07 1 21077 146.58 120.96 5 60931000 22494 14700 25714 13252 11892 23877 13904 19480 13872 22515 21297 13878 25542 13866 12912 23447 14056 20389 13689 21651 1 1 1 1 1 1 1 1 1 1 567 2250 496 527 632 632 4156 ASSFSGISVLTR 12 Phospho (STY) _ASS(ph)FSGISVLTR_ AS(0.016)S(0.978)FS(0.007)GISVLTR AS(-17.97)S(17.97)FS(-21.65)GIS(-96.53)VLT(-153.66)R 0 0 1 0 Q15032 Q15032 Q15032 R3HDM1 R3H domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.400207519531 2 652.815942 1303.61733 35972.2424208786 1.8447 0.0012043 175520 114.58 175520 114.58 767.39738079834 83.84 0.68988 83.84 83.526 84.216 -1.4211E-14 74 23 5 0.876710919451154 0.0035075206343912 0.0911949893172213 6.5127E-16 1 19569 221.77 186.57 5 64187000 18710 14316 17855 14532 15166 18562 16289 17291 14594 14129 17701 13525 17997 14973 15563 18437 16481 17820 14472 13704 1 1 1 1 1 1 1 1 1 1 568 1048 497 528 633 633 1807 ASSHSSQTQGGGSVTK 16 2 Phospho (STY) _ASS(ph)HSS(ph)QTQGGGSVTK_ AS(0.137)S(0.804)HS(0.128)S(0.929)QT(0.002)QGGGSVTK AS(-7.69)S(7.69)HS(-11.02)S(11.02)QT(-27.54)QGGGS(-90.34)VT(-98.16)K 0 0 2 0 P02545 P02545 P02545 LMNA Prelamin-A/C;Lamin-A/C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.996948242188 3 560.220501 1677.63967 37031.4937055559 2.2711 0.0012723 272710 152.78 272710 152.78 712.99588428734 30.882 0.74415 30.882 30.495 31.239 0 52 24 3 0.988674272538749 0.00141047649038169 0.0355504711875956 0.00011903 1 6925 114.75 101.32 21 10871000 7497.2 11990 6810.3 12044 7780.3 9697 8332.1 13667 12369 2334 7091.7 11327 6910 12325 7849.8 9878.7 8565.4 13625 12033 2514 1 1 1 1 1 1 1 1 1 1 569 285 498 529 634 634 471;472 ASSLEDLVLK 10 Phospho (STY) _ASS(ph)LEDLVLK_ AS(0.004)S(0.996)LEDLVLK AS(-24.49)S(24.49)LEDLVLK 0 0 1 0 Q15477 Q15477 Q15477 SKIV2L Helicase SKI2W MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.953674316406 2 577.788862 1153.56317 34873.798108925 2.3547 0.0013605 396620 229.16 396620 229.16 806.952080429924 96.13 1.6223 96.13 95.821 97.443 0 149 55 4 0.992186122078314 0.00540310889927592 0.397875916339193 1.4743E-20 2 22333 252.21 193.96 2 66469000 61499 12739 61769 13852 45279 63223 44344 41906 14298 34011 58195 12041 61979 14948 46881 60965 44360 43886 15382 32995 2 2 2 2 2 2 2 2 2 2 570 1078 499 530 635;636 635 1869 ASSLGEIDESSELR 14 Phospho (STY) _ASS(ph)LGEIDESSELR_ AS(0.004)S(0.996)LGEIDESSELR AS(-23.75)S(23.75)LGEIDES(-109.02)S(-140.47)ELR 0 0 1 0 Q16513 Q16513 Q16513 PKN2 Serine/threonine-protein kinase N2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.424926757813 2 786.843082 1571.67161 32578.0494769866 1.5938 0.0012541 145620 114.58 145620 114.58 901.423721868573 65.565 0.76173 65.565 65.226 65.988 0 52 25 3 0.970764329961214 0.00163806474856658 0.0599244004951025 3.0124E-31 1 15404 296.49 248.05 4 10426000 12433 12012 12408 13011 13324 14259 10822 12298 11493 13467 11765 11353 12502 13318 13432 14238 11154 12817 11312 12965 1 1 1 1 1 1 1 1 1 1 571 1103 500 531 637 637 1924 ASSLNENVDHSALLK 15 Phospho (STY) _ASS(ph)LNENVDHSALLK_ AS(0.15)S(0.85)LNENVDHSALLK AS(-7.53)S(7.53)LNENVDHS(-84.02)ALLK 0 0 1 0 Q96SB3 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.711608886719 3 559.93297 1676.77708 36531.8182564927 1.8088 0.0010128 272850 152.78 272850 152.78 712.709212821037 64.745 0.60786 64.745 64.446 65.054 0 84 20 5 0.900726687714259 0.00562799727843454 0.0819611328009073 8.7291E-11 1 15178 196.61 155.51 3 92583000 27830 21124 27574 24382 43778 29372 47710 32066 28087 14450 26334 19974 27986 24916 43506 29279 47839 32496 28545 14349 1 1 1 1 1 1 1 1 1 1 572 1747 501 532 638 638 3206 ASSLNFLNK 9 Phospho (STY) _ASS(ph)LNFLNK_ AS(0.005)S(0.995)LNFLNK AS(-23.36)S(23.36)LNFLNK 0 0 1 0 Q9H0B6 Q9H0B6 Q9H0B6 KLC2 Kinesin light chain 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.421691894531 2 537.254989 1072.49543 36018.0498498975 2.3756 0.0012763 426540 229.16 426550 229.16 766.418113522595 82.573 0.76984 82.573 82.259 83.028 0 82 26 5 0.985217988338989 0.00111201423801886 0.0284428889032664 5.5364E-09 1 19281 176.61 124.66 2 98464000 10317 44716 10770 43857 8298.6 9102.9 9120.6 21354 46338 14271 9764.1 42237 10790 44525 8614.2 10856 10264 21375 44144 13932 1 1 1 1 1 1 1 1 1 1 573 1899 502 533 639 639 3454 ASSPAQCVTPVQTVV 15 Phospho (STY) _AS(ph)SPAQCVTPVQTVV_ AS(0.563)S(0.437)PAQCVTPVQTVV AS(1.11)S(-1.11)PAQCVT(-34.92)PVQT(-72.48)VV 0 0 1 0 Q13614 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 926.960510253906 2 812.376038 1622.73752 31952.1232528496 1.7663 0.0014349 141050 114.58 141050 114.59 927.461779676204 73.613 0.42857 73.613 73.356 73.785 0 43 14 4 0.964548125291923 0.000585773766539793 0.0111016015694534 0.0001354 1 17248 120.66 85.703 4 29307000 4335.2 7266.8 5367.9 6462.4 8923.1 5147.9 6923 8365.4 7242.9 37100 4106.1 6860.1 5385.5 6663.4 8817.2 5328.9 7151.8 9384.3 7133 35127 1 1 1 1 1 1 1 1 1 1 574 972 503 534 640 640 1647 ASSPEKAEEDR 11 Phospho (STY) _AS(ph)SPEKAEEDR_ AS(0.544)S(0.456)PEKAEEDR AS(0.76)S(-0.76)PEKAEEDR 0 0 1 1 Q8N3D4 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 586.623229980469 3 433.513523 1297.51874 41713.793896588 1.6983 0.00073623 352410 152.78 352410 152.78 586.288586469243 29.059 0.32434 29.059 28.866 29.191 0 29 10 4 0.910148332419707 0.00135707935091443 0.023245311963134 0.018752 1 6475 58.831 34.742 2 6547600 11371 11483 11167 12796 11188 12664 9821.8 12350 14900 3336.3 10759 10856 11254 13056 11338 12702 10202 12500 14487 3427.3 1 1 1 1 1 1 1 1 1 1 575 1461 504 535 641 641 2707 ASSPFRR 7 Phospho (STY) _ASS(ph)PFRR_ ASS(1)PFRR AS(-33.77)S(33.77)PFRR 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 565.290771484375 2 450.708009 899.401466 41400.8281398479 1.6754 0.00075511 254220 114.58 254230 114.58 565.289478407259 31.66 1.1411 31.66 31.33 32.471 0 124 38 5 0.920178824082169 0.00214036271360868 0.0599170284709684 0.020353 1 7027 74.269 6.7614 2 1187600000 18282 16720 16217 15762 16663 14532 16295 15924 15379 2804 17292 15790 16453 16223 16878 14644 16579 16004 15213 3008.8 1 1 1 1 1 1 1 1 1 1 576 1035 505 536 642 642 1778 ASSPPDRIDIFGR 13 Phospho (STY) _ASS(ph)PPDRIDIFGR_ AS(0.086)S(0.914)PPDRIDIFGR AS(-10.26)S(10.26)PPDRIDIFGR 0 0 1 1 Q9NWB6 Q9NWB6 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.6279296875 3 504.239846 1509.69771 40236.8338337739 1.3724 0.00069201 151490 76.387 151490 76.388 580.627472705436 73.289 1.1214 73.289 72.663 73.785 0 175 38 6 0.95815933420581 0.00334689977063553 0.103015747159519 4.2569E-07 2 17106 151.39 119.56 2 262100000 20237 13592 22044 13727 21027 20673 22553 18203 14263 5492.8 19156 12841 22084 14198 21412 20391 22657 18520 14425 5593.4 2 2 2 2 2 2 2 2 2 2 577 2053 506 537 643;644 643 3714 ASSRVSGSFPEDSSK 15 Phospho (STY) _ASSRVS(ph)GSFPEDSSK_ AS(0.005)S(0.004)RVS(0.713)GS(0.278)FPEDSSK AS(-21.75)S(-22.56)RVS(4.09)GS(-4.09)FPEDS(-69.13)S(-75.67)K 0 0 1 1 O15400 O15400 O15400 STX7 Syntaxin-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.010498046875 3 540.901558 1619.68284 36600.72623122 1.6402 0.00088719 282440 152.77 282450 152.78 694.010152706982 46.633 0.92018 46.633 46.258 47.178 0 91 31 4 0.951260239130867 0.00351853782839237 0.0185535704297677 5.394E-05 1 10754 126.61 90.953 6 33548000 19266 23560 22232 22902 26634 22503 31836 26499 27752 7292.8 18242 22253 22279 23549 26838 22637 32045 26645 27556 7480.3 1 1 1 1 1 1 1 1 1 1 578 91 507 538 645 645 156;157;158 ASSRVSGSFPEDSSK 15 2 Phospho (STY) _AS(ph)SRVS(ph)GSFPEDSSK_ AS(0.501)S(0.501)RVS(0.847)GS(0.151)FPEDSSK AS(0)S(0)RVS(7.5)GS(-7.5)FPEDS(-48.69)S(-53.8)K 0 0 2 1 O15400 O15400 O15400 STX7 Syntaxin-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.333251953125 3 567.557002 1699.64918 36153.3037870574 1.6017 0.00090904 269180 152.77 269180 152.78 720.665652456424 50.73 1.0998 50.73 50.183 51.283 0 103 37 3 0.936212169382749 0.001015795958125 0.0160159605189385 0.0052594 1 11778 88.976 66.821 15 18116000 15716 17268 15588 17803 21921 15873 18203 18035 19716 10510 14871 16316 15774 18216 21821 16043 18749 18323 19389 10314 1 1 1 1 1 1 1 1 1 1 579 91 507 539 646 646 156;157;158 ASSSGPRSPLDQR 13 Phospho (STY) _ASSSGPRS(ph)PLDQR_ ASS(0.001)S(0.005)GPRS(0.995)PLDQR AS(-46)S(-32.84)S(-23.26)GPRS(23.26)PLDQR 0 0 1 1 O14646 O14646 O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.910095214844 2 719.327737 1436.64092 34504.7626768224 1.9777 0.0014226 159290 114.58 159290 114.58 833.909530978446 29.833 0.58856 29.833 29.636 30.224 0 53 19 4 0.99332780685242 0.0024834156991449 0.0527775397421237 6.4949E-07 1 6645 151.41 104.54 4 41968000 12719 15115 11385 15029 9235 12777 10674 12802 15152 1927.6 12031 14278 11517 15400 9523.2 12912 10918 12899 14760 2111.4 1 1 1 1 1 1 1 1 1 1 580 60 508 540 647 647 98 ASSSSMKIPLNK 12 Phospho (STY) _ASSS(ph)SMKIPLNK_ AS(0.022)S(0.087)S(0.513)S(0.379)MKIPLNK AS(-13.65)S(-7.71)S(1.32)S(-1.32)MKIPLNK 0 0 1 1 Q9Y5X1 Q9Y5X1 Q9Y5X1 SNX9 Sorting nexin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.384460449219 3 448.219394 1341.63635 38044.8864597248 2.1376 0.00095813 511270 229.16 511280 229.16 677.716056702748 65.4 0.4932 65.4 65.166 65.659 0 55 16 4 0.935845015611719 0.00327341104066114 0.0843792476002007 0.00012322 1 15353 108.14 76.336 4 23495000 11254 26480 11955 25898 9486.1 10672 8941.6 15736 27541 6114.9 10652 25011 11967 26382 9782.2 11452 9637.3 15772 26386 6122.1 1 1 1 1 1 1 1 1 1 1 581 2302 509 541 648 648 4241 ASSVSTKESPAR 12 Phospho (STY) _ASSVSTKES(ph)PAR_ ASSVSTKES(1)PAR AS(-130.5)S(-94.41)VS(-67.25)T(-46.91)KES(46.91)PAR 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.46533203125 2 650.300656 1298.58676 33969.6248597937 2.5047 0.0016288 352400 229.16 352400 229.16 879.463743674062 31.049 0.38782 31.049 30.851 31.239 0 30 12 3 0.981783290072181 0.00122218616868116 0.0513744450409656 6.1966E-16 1 6926 220.25 198.17 5 18627000 12682 16822 11304 17449 7340.4 10891 7871.4 12988 18426 1025.1 11995 15895 11414 17773 7700.5 11238 8276 12977 17733 1265.9 1 1 1 1 1 1 1 1 1 1 582 953 510 542 649 649 1594 ASSVSTKESPARK 13 Phospho (STY) _ASSVSTKES(ph)PARK_ AS(0.007)S(0.006)VS(0.018)T(0.078)KES(0.891)PARK AS(-20.85)S(-21.43)VS(-16.97)T(-10.59)KES(10.59)PARK 0 0 1 2 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.800964355469 4 357.677707 1426.68172 42665.2361485194 1.0753 0.00038459 480520 171.87 480520 171.87 529.80039177139 33.425 0.64779 33.425 33.168 33.816 0 53 18 4 0.883639284701852 0.00582852463445224 0.0115041035930033 0.017833 1 7488 60.764 40.101 5 83724000 26199 45812 32664 38043 23657 35168 22613 30270 44974 3244.9 24815 43233 32407 39489 24546 35324 23680 30651 43428 3756 1 1 1 1 1 1 1 1 1 1 583 953 511 543 650 650 1594 ASTASPCNNNINAATAVALQEPR 23 Phospho (STY) _ASTAS(ph)PCNNNINAATAVALQEPR_ AS(0.002)T(0.016)AS(0.982)PCNNNINAATAVALQEPR AS(-26.25)T(-17.91)AS(17.91)PCNNNINAAT(-117.03)AVALQEPR 0 0 1 0 Q71RC2 Q71RC2 Q71RC2 LARP4 La-related protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.096984863281 3 817.375843 2449.1057 32807.2404128113 2.3226 0.0018984 93454 76.387 93456 76.389 894.097098211341 68.386 0.69645 68.386 68.035 68.732 0 112 23 6 0.865311505095847 0.00651582596464188 0.199802306677946 2.4469E-12 1 16016 187.48 168.98 4 139050000 6464.3 6382.6 5581.9 7278.9 5790.2 6021.6 7237.3 4857.6 6633.6 19515 6113.5 6034.5 5676.6 7398.8 5883.5 6114 7280.9 5505.6 6571 18488 1 1 1 1 1 1 1 1 1 1 584 1309 512 544 651 651 2335 ASTNSETNRGESEK 14 Phospho (STY) _ASTNS(ph)ETNRGESEK_ ASTNS(0.986)ET(0.013)NRGESEK AS(-40.89)T(-34.01)NS(18.71)ET(-18.71)NRGES(-72.9)EK 0 0 1 1 P02686 P02686 P02686 MBP Myelin basic protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.661437988281 3 530.552817 1588.63662 38653.9916204331 1.1989 0.00063606 287960 152.78 287960 152.78 683.661998084977 26.786 0.29403 26.786 26.65 26.945 0 22 9 3 0.892649771743564 0.00636547534606856 0.0344315097716218 6.1679E-05 1 5965 126.4 94.059 5 30332000 34044 6275.8 39111 7470.1 8832.4 34956 9144.6 17900 6095.4 3671.6 32233 5935.3 38721 8038.8 10752 33605 9209.9 18726 6143.7 3871.5 1 1 1 1 1 1 1 1 1 1 585 286 513 545 652 652 476 ASTSKSESSQK 11 Phospho (STY) _ASTS(ph)KSESSQK_ AS(0.06)T(0.06)S(0.836)KS(0.04)ES(0.003)SQK AS(-11.41)T(-11.41)S(11.41)KS(-13.21)ES(-24.54)S(-44.7)QK 0 0 1 1 P62753 P62753 P62753 RPS6 40S ribosomal protein S6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.342163085938 3 407.178252 1218.51293 38788.0276648975 2.4664 0.0010043 562810 229.16 562810 229.16 636.341336891403 29.705 0.94615 29.705 29.488 30.434 3.5527E-15 81 31 5 0.99304209882152 0.0120939502701116 0.100259309414286 3.8246E-07 1 6613 158.91 124.53 6 126440000 65225 56312 73754 55537 29339 63949 31166 55134 64541 3806.7 61751 53192 73235 57206 32453 63620 32550 55760 62267 4860.5 1 1 1 1 1 1 1 1 1 1 586 768 514 546 653 653 1249;4494 ASVGPLQSGASPTPSISASASTLQLSPPR 29 Phospho (STY) _ASVGPLQSGASPTPSISASASTLQLS(ph)PPR_ ASVGPLQSGASPTPSISASASTLQLS(1)PPR AS(-220.21)VGPLQS(-198.14)GAS(-183.22)PT(-150.7)PS(-115.02)IS(-89.34)AS(-79.67)AS(-75.73)T(-71.79)LQLS(71.79)PPR 0 0 1 0 Q6N043 Q6N043 Q6N043 ZNF280D Zinc finger protein 280D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1025.53625488281 3 948.809482 2843.40662 30940.2010828131 1.4211 0.0013483 80508 76.387 80509 76.388 1025.86405428544 85.113 1.318 85.113 84.385 85.703 0 129 45 4 0.926680976574648 0.00534713514491904 0.0950646492619887 3.7231E-18 1 19868 239.22 225.61 10 19352000 3091.8 4204.5 4053.1 3707.5 3518.9 3923.8 3689.8 5763.7 4459.7 75926 2929.3 3969 4019.7 3840.5 3605.7 4089.4 3768.7 7997.9 4367.8 71627 1 1 1 1 1 1 1 1 1 1 587 1248 515 547 654 654 2210 ASVSELACIYSALILHDDEVTVTEDK 26 Acetyl (Protein N-term) _(ac)ASVSELACIYSALILHDDEVTVTEDK_ 1 0 0 0 P05386 P05386 P05386 RPLP1 60S acidic ribosomal protein P1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1050.865234375 3 974.142588 2919.40593 29169.6662073653 1.1698 0.0011396 78416 76.388 78417 76.389 1050.86405737629 102.7 0.14821 102.7 102.63 102.77 0 9 4 3 0.738572752345736 0.00109738166378951 0.0239205779038233 3.5236E-05 1 24210 90.968 74.283 1 57287000 6591.4 5613.1 4280.1 4557.9 5931.5 6213.3 7588.6 9425.1 5565.1 80617 6228.5 5296.5 4466 4770.9 5943.3 6346.1 7589.5 11759 5576.9 76129 1 1 1 1 1 1 1 1 1 1 588 301 516 548 655 655 ASWESLDEEWR 11 Phospho (STY) _AS(ph)WESLDEEWR_ AS(0.996)WES(0.004)LDEEWR AS(24.11)WES(-24.11)LDEEWR 0 0 1 0 Q00587 Q00587 Q00587 CDC42EP1 Cdc42 effector protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 859.37548828125 2 744.295571 1486.57659 34577.8696858155 2.0419 0.0015198 153940 114.58 153950 114.58 858.876012345207 89.921 0.75883 89.921 89.633 90.392 0 57 25 3 0.689558142740544 0.00166611300810365 0.0690314342807599 0.00010238 1 20938 125.82 104.59 2 17272000 11711 12167 13330 11532 4785.1 12719 5950.5 12408 11535 41264 11087 11491 13227 11899 5382.2 12770 6154 13702 11144 39143 1 1 1 1 1 1 1 1 1 1 589 824 517 549 656 656 1321 ATAPQTQHVSPMR 13 Oxidation (M),Phospho (STY) _ATAPQTQHVS(ph)PM(ox)R_ ATAPQTQHVSPM(1)R ATAPQTQHVS(1)PMR ATAPQTQHVSPM(148.06)R AT(-97.88)APQT(-60.39)QHVS(60.39)PMR 0 1 1 0 P29692 P29692 P29692 EEF1D Elongation factor 1-delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.6171875 3 507.228952 1518.66503 40480.4190493715 1.2294 0.0006236 150600 76.387 150600 76.388 583.616999042594 27.378 1.1765 27.378 27.06 28.236 0 119 40 6 0.993427459504687 0.0128008065306389 0.0788161816439993 5.1022E-07 1 6067 148.06 128.79 3 696580000 10897 9315.6 9560.5 9413.2 8833 11539 11144 9082.7 10370 2761.3 10306 8800.6 9699.2 9693.3 9038.7 11446 11212 9289 10265 2810.3 1 1 1 1 1 1 1 1 1 1 590 503 518 550 657 657 69 832 ATAPQTQHVSPMR 13 Phospho (STY) _ATAPQTQHVS(ph)PMR_ ATAPQTQHVS(1)PMR AT(-139.7)APQT(-76.23)QHVS(76.23)PMR 0 0 1 0 P29692 P29692 P29692 EEF1D Elongation factor 1-delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 578.28466796875 3 501.897314 1502.67011 40869.764638043 0.73955 0.00037118 152200 76.387 152200 76.388 578.28557448759 34.605 0.8369 34.605 34.313 35.15 0 129 28 7 0.982911264893206 0.0105883135973892 0.183123915531472 2.1644E-16 1 7720 240.39 213.61 3 3306300000 18719 17487 19306 16582 17404 18336 17835 18730 19154 2093.4 17715 16514 19384 17109 17781 18310 18170 18835 18843 2404.7 1 1 1 1 1 1 1 1 1 1 591 503 518 551 658 658 832 ATASPRPSSGNIPSSPTASGGGSPTSPR 28 Phospho (STY) _ATASPRPSSGNIPSSPTASGGGS(ph)PTSPR_ ATASPRPSSGNIPSSPTASGGGS(0.999)PT(0.001)SPR AT(-189.81)AS(-174.65)PRPS(-150.01)S(-151.99)GNIPS(-88.75)S(-77.48)PT(-71.82)AS(-53.39)GGGS(30.57)PT(-30.57)S(-59.4)PR 0 0 1 1 Q9UBW5 Q9UBW5 Q9UBW5 BIN2 Bridging integrator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 964.47021484375 3 887.746993 2660.21915 32109.3503247883 1.3691 0.0012154 86047 76.388 86048 76.389 964.469296908707 39.591 0.52085 39.591 39.282 39.803 0 79 17 6 0.983950814992291 0.00512227724912642 0.0427859220494208 2.1399E-34 1 8965 315.86 295.09 11 63247000 6964.6 589.14 7604.1 1034.7 23086 8170.9 25083 12033 1170.2 4273 6592.7 559.08 7813.4 1149.9 22519 7928 24781 12049 2168.8 4302.1 1 1 1 1 1 1 1 1 1 1 592 2131 519 552 659 659 3831 ATDIPASASPPPVAGVPFFK 20 Phospho (STY) _ATDIPASAS(ph)PPPVAGVPFFK_ ATDIPAS(0.067)AS(0.933)PPPVAGVPFFK AT(-55.48)DIPAS(-11.42)AS(11.42)PPPVAGVPFFK 0 0 1 0 Q8N1G0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 836.785339355469 3 683.674608 2048.00199 33833.6780871604 2.3511 0.0016074 223460 152.78 223470 152.78 836.785071044875 100.3 0.25183 100.3 100.17 100.42 1.4211E-14 32 8 6 0.972426160019761 0.0158657638446489 0.188499204691676 1.5368E-07 1 23431 140.73 124.79 3 337070000 62345 70757 61337 67775 42214 62493 44079 64826 87392 64371 58990 66824 61590 69686 44035 63026 45965 66874 84393 62113 1 1 1 1 1 1 1 1 1 1 593 1455 520 553 660 660 2694 ATDSDLSSPR 10 Phospho (STY) _ATDSDLSS(ph)PR_ ATDSDLS(0.006)S(0.994)PR AT(-99.1)DS(-67.74)DLS(-22.44)S(22.44)PR 0 0 1 0 Q9BRD0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.313598632813 2 564.732075 1127.4496 37818.0108553727 1.3077 0.00073849 202890 114.58 202900 114.58 679.313062813141 33.292 0.52748 33.292 32.939 33.467 0 41 18 3 0.985511229525228 0.0010873660083139 0.00499701175230404 1.7876E-06 1 7452 159.44 113.45 4 27016000 15421 13189 14037 11688 12089 14853 12357 14357 13304 4104.8 14587 12450 14190 12144 12388 14749 12592 14544 13087 4197.5 1 1 1 1 1 1 1 1 1 1 594 1810 521 554 661 661 3321 ATEDGEEDEEMIESIENLEDLKGHSVR 27 Unmodified _ATEDGEEDEEMIESIENLEDLKGHSVR_ 0 0 0 1 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 884.182250976563 4 769.349022 3073.36698 34211.7475193802 2.0776 0.0015984 148930 114.58 148930 114.58 884.179991663736 98.677 0.2028 98.677 98.574 98.777 0 7 6 2 0.649340255073918 0.000563842655152802 0.0280631244745712 0.0005151 1 22910 100.27 89.636 1 11846000 3572.7 3603.9 3802.9 3266 4196.2 4771 4032.7 5163.1 4190.9 28324 3381.5 3402.6 3820.6 3398.2 4232.9 4773.3 4117.1 6017.2 4128.5 26790 1 1 1 1 1 1 1 1 1 1 595 647 522 555 662 662 ATENDIANFFSPLNPIR 17 Phospho (STY) _ATENDIANFFS(ph)PLNPIR_ ATENDIANFFS(1)PLNPIR AT(-92.59)ENDIANFFS(92.59)PLNPIR 0 0 1 0 P31942 P31942 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.705139160156 3 666.982212 1997.92481 37551.3751651393 1.1104 0.00074061 114530 76.388 114530 76.389 743.704666661864 101.6 0.20258 101.6 101.53 101.73 0 12 6 3 0.92780230247731 0.000458825473984646 0.00861114035805961 5.6613E-05 1 23906 117.38 99.242 2 17813000 4933.2 5718.9 4511.9 5441 6071.6 4591.9 5819.2 6485.8 6523 26986 4666.5 5400.9 4586 5589.9 6066.4 4715.2 5954.8 7245.4 6406.4 25560 1 1 1 1 1 1 1 1 1 1 596 523 523 556 663 663 850 ATENDIYNFFSPLNPVR 17 Phospho (STY) _ATENDIYNFFS(ph)PLNPVR_ ATENDIY(0.002)NFFS(0.998)PLNPVR AT(-38.96)ENDIY(-26.97)NFFS(26.97)PLNPVR 0 0 1 0 P31943;P52597 P31943;P52597 P31943 HNRNPH1;HNRNPF Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1153.55847167969 2 1038.97496 2075.93537 NaN NaN NaN NaN NaN NaN NaN NaN 101.57 1 101.57 101.07 102.07 0 NaN NaN NaN 0.04746 1 23884 48.883 25.033 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 597 524;694 524 557 664 664 852 ATETSPLTR 9 Phospho (STY) _ATETS(ph)PLTR_ ATET(0.03)S(0.97)PLTR AT(-63.33)ET(-15.16)S(15.16)PLT(-70.39)R 0 0 1 0 O75037 O75037 O75037 KIF21B Kinesin-like protein KIF21B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.824462890625 2 528.242079 1054.4696 38058.710826832 1.8688 0.0009872 216910 114.58 216910 114.58 642.824545568425 37.949 0.7028 37.949 37.508 38.211 0 55 23 4 0.962164877240849 0.00301241819890364 0.088713945783595 1.6829E-07 1 8589 175.34 131.7 4 34822000 26643 17480 23571 17392 24298 25806 24060 23112 20678 3169.9 25199 16512 23920 17998 24609 25463 24410 23383 20547 3519.8 1 1 1 1 1 1 1 1 1 1 598 163 525 558 665 665 283 ATGAALTPTEER 12 Phospho (STY) _ATGAALT(ph)PTEER_ ATGAALT(0.901)PT(0.099)EER AT(-37.16)GAALT(9.58)PT(-9.58)EER 0 0 1 0 Q13459 Q13459 Q13459 MYO9B Unconventional myosin-IXb MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.374450683594 2 648.795207 1295.57586 35334.7295488765 1.5596 0.0010118 176600 114.58 176610 114.58 763.375403388908 39.875 0.49171 39.875 39.629 40.12 0 52 16 4 0.466378216071853 0.00180538020149246 0.0537774664154597 0.00030755 1 9041 102.57 67.153 3 64320000 27388 35815 27767 33174 52238 30687 56844 39915 37466 9781.8 25917 33818 28246 34183 51613 31004 57110 39975 37790 10134 1 1 1 1 1 1 1 1 1 1 599 958 526 559 666 666 4538 ATGEPGTFVCTSHLPAAASASPK 23 Phospho (STY) _ATGEPGTFVCTSHLPAAASAS(ph)PK_ ATGEPGTFVCTSHLPAAAS(0.002)AS(0.998)PK AT(-181.93)GEPGT(-172.08)FVCT(-135.86)S(-129.79)HLPAAAS(-26.77)AS(26.77)PK 0 0 1 0 Q8IY33 Q8IY33 Q8IY33 MICALL2 MICAL-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.853149414063 4 585.019979 2336.05081 37853.2502892545 1.9191 0.0011227 195860 114.58 195860 114.58 699.852217871009 66.424 0.69833 66.424 66.049 66.747 0 80 23 5 0.979033523580983 0.00395659938383111 0.0436736848997463 9.0515E-18 2 15588 226.23 200.41 6 24918000 16106 23327 16348 21548 17009 16688 18837 23094 22289 26306 15241 22026 16459 22155 17251 17074 19182 23710 21846 25305 2 2 2 2 2 2 2 2 2 2 600 1433 527 560 667;668 667 2613 ATISDEEIER 10 Phospho (STY) _ATIS(ph)DEEIER_ AT(0.019)IS(0.981)DEEIER AT(-17.08)IS(17.08)DEEIER 0 0 1 0 Q9UQN3 Q9UQN3 Q9UQN3 CHMP2B Charged multivesicular body protein 2b MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.349243164063 2 621.766115 1241.51768 36198.5269418983 1.7047 0.0010599 184290 114.58 184290 114.58 736.34887790312 50.038 0.84874 50.038 49.628 50.477 0 77 28 4 0.98533059456032 0.00165291560019032 0.073402440384848 3.225E-14 1 11576 222.2 163.95 2 28998000 24343 23397 23017 25134 16789 25525 16561 23148 23823 8065.7 23030 22113 23176 25707 17409 25553 17067 23554 23199 8130.5 1 1 1 1 1 1 1 1 1 1 601 2232 528 561 669 669 4125 ATNESEDEIPQLVPIGK 17 Phospho (STY) _ATNES(ph)EDEIPQLVPIGK_ AT(0.027)NES(0.973)EDEIPQLVPIGK AT(-15.55)NES(15.55)EDEIPQLVPIGK 0 0 1 0 O76021 O76021 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.748840332031 3 640.638111 1918.8925 34957.0310970128 2.1962 0.001407 238470 152.78 238480 152.78 793.747431805345 92.096 3.1991 92.096 91.568 94.767 0 404 110 7 0.978664637301699 0.0196240134959099 0.210080111875993 2.0818E-09 5 21576 175.85 158.02 2 381000000 46721 89455 45953 94482 71471 47185 71595 72243 100730 127520 44207 84534 46629 95945 71051 49962 73670 75337 98153 121740 5 5 5 5 5 5 5 5 5 5 602 210 529 562 670;671;672;673;674 672 366 ATNESEDEIPQLVPIGK 17 Phospho (STY) _ATNES(ph)EDEIPQLVPIGK_ ATNES(1)EDEIPQLVPIGK AT(-39)NES(39)EDEIPQLVPIGK 0 0 1 0 O76021 O76021 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1190.11767578125 2 960.453528 1918.8925 29203.7226942423 2.0271 0.0019469 238600 229.16 238600 229.16 1190.114185421 92.092 0.80612 92.092 91.794 92.6 0 89 27 4 0.804677706013995 0.00205266161656993 0.0701388018686839 1.0085E-15 1 21473 225.17 200.37 2 27187000 7544.5 14958 5935.5 16973 10500 7680.4 10115 11029 19135 34402 7133 14142 6124.3 17155 10389 8220 10562 11970 18498 32649 1 1 1 1 1 1 1 1 1 1 603 210 529 562 675 675 366 ATQASQEY 8 Phospho (STY) _ATQAS(ph)QEY_ ATQAS(1)QEY AT(-65.51)QAS(65.51)QEY(-94.5) 0 0 1 0 P16104 P16104 P16104 H2AFX Histone H2AX MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.766906738281 2 489.18423 976.353906 40757.1694980223 1.6622 0.0008131 234230 114.58 234230 114.58 603.766022966595 38.036 0.86689 38.036 37.714 38.581 0 78 29 4 0.901926339120646 0.0146893746016742 0.429005708649404 2.2493E-05 1 8597 151.22 130.32 3 188010000 28365 25510 25793 26099 36944 27310 39563 28677 25766 1587.1 26831 24102 26261 26781 36857 27340 39768 28760 26008 2158.2 1 1 1 1 1 1 1 1 1 1 604 402 530 563 676 676 636;4399;4871 ATSEEDVSIKSPICEK 16 Phospho (STY) _ATSEEDVSIKS(ph)PICEK_ ATSEEDVS(0.009)IKS(0.991)PICEK AT(-78.14)S(-63.12)EEDVS(-20.55)IKS(20.55)PICEK 0 0 1 1 Q5UIP0 Q5UIP0 Q5UIP0 RIF1 Telomere-associated protein RIF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.445861816406 3 624.948068 1871.82237 33695.1479118984 1.9658 0.0012285 366690 229.16 366690 229.16 854.444894689015 61.801 0.52795 61.801 61.594 62.122 0 56 17 5 0.986440300139119 0.00381306204599018 0.0391714110033609 3.4148E-07 1 14492 154.84 136.94 4 30147000 21214 38708 20334 37985 18056 22120 18722 29614 41543 21659 20070 36562 20499 38791 18489 23015 19651 30068 40023 21080 1 1 1 1 1 1 1 1 1 1 605 1197 531 564 677 677 2089 ATSGSSLPVGINR 13 Phospho (STY) _ATS(ph)GSSLPVGINR_ AT(0.245)S(0.755)GSSLPVGINR AT(-4.89)S(4.89)GS(-40.38)S(-69.29)LPVGINR 0 0 1 0 Q13905 Q13905 Q13905 RAPGEF1 Rap guanine nucleotide exchange factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.410888671875 2 669.824299 1337.63404 34453.5246709477 1.3719 0.00091894 171060 114.58 171070 114.58 784.407814626625 59.084 0.48924 59.084 58.876 59.365 0 36 16 3 0.97804314351867 0.00158617818489283 0.0709671693461445 5.4486E-11 1 13843 204.94 173.31 4 17941000 19339 21262 19907 20883 12560 18615 13877 19302 23437 10432 18302 20083 19925 21428 13208 18788 14324 19649 22720 10270 1 1 1 1 1 1 1 1 1 1 606 982 532 565 678 678 1658 ATSLPSLDTPGELR 14 Phospho (STY) _ATS(ph)LPSLDTPGELR_ AT(0.006)S(0.994)LPSLDTPGELR AT(-22.48)S(22.48)LPS(-51.08)LDT(-123.67)PGELR 0 0 1 0 Q7L591 Q7L591 Q7L591 DOK3 Docking protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 883.453063964844 2 768.868903 1535.72325 33413.7955054452 2.0712 0.0015925 149030 114.58 149030 114.58 883.450835555065 77.647 0.7527 77.647 77.339 78.092 0 113 25 6 0.964705234688987 0.0044037480691542 0.126749865931836 2.3888E-23 1 18159 283.42 246.58 4 335580000 14669 9352.3 15642 10742 26897 14876 26641 16595 9175.8 15537 13884 8842.7 15832 11011 26611 14777 26653 17048 9794.5 15014 1 1 1 1 1 1 1 1 1 1 607 1319 533 566 679 679 2365 ATSNVFAMFDQSQIQEFK 18 Oxidation (M),Phospho (STY) _ATS(ph)NVFAM(ox)FDQSQIQEFK_ ATSNVFAM(1)FDQSQIQEFK AT(0.183)S(0.817)NVFAMFDQSQIQEFK ATSNVFAM(255.79)FDQSQIQEFK AT(-6.51)S(6.51)NVFAMFDQS(-134.98)QIQEFK 0 1 1 0 P19105;O14950;P24844 P19105 P19105 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.763977050781 3 729.653655 2185.93914 32625.9837595781 1.9422 0.0014171 209380 152.77 209380 152.78 882.763153226171 99.906 0.3938 99.906 99.72 100.11 0 35 13 6 0.993414055703899 0.018559914501179 0.549520935584079 1.2376E-22 1 23246 255.79 226.41 3 362070000 129860 27840 134570 30925 131070 126480 138480 112630 26413 61200 122900 26317 135210 33100 133210 122450 137530 115360 30814 60234 1 1 1 1 1 1 1 1 1 1 608 72 534 567 680 680 9 118 ATSNVFAMFDQSQIQEFK 18 Phospho (STY) _ATS(ph)NVFAMFDQSQIQEFK_ AT(0.147)S(0.853)NVFAMFDQSQIQEFK AT(-7.65)S(7.65)NVFAMFDQS(-126.48)QIQEFK 0 0 1 0 P19105;O14950;P24844 P19105 P19105 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.429077148438 3 724.322017 2169.94422 33222.4382057836 1.0042 0.00072737 210920 152.78 210920 152.78 877.43198548724 101.38 0.25496 101.38 101.3 101.56 0 41 8 7 0.990031310711551 0.11458796071462 1 6.6265E-32 1 23819 319.52 283.54 3 771890000 259080 47341 271220 47703 267760 269240 260840 210060 54923 27908 245200 44724 272350 52518 271630 259300 260210 213840 62926 31140 1 1 1 1 1 1 1 1 1 1 609 72 534 568 681 681 118 ATSPEAGGGGGALK 14 Phospho (STY) _ATS(ph)PEAGGGGGALK_ AT(0.007)S(0.993)PEAGGGGGALK AT(-21.44)S(21.44)PEAGGGGGALK 0 0 1 0 Q13233 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.94775390625 2 626.782099 1251.54965 33785.8636947554 2.3676 0.0014839 365620 229.16 365620 229.16 855.945453913265 45.861 0.46578 45.861 45.614 46.079 0 28 15 2 0.881963552644561 0.0017734215176813 0.0300738909829642 9.8399E-08 1 10560 173.54 137.81 2 27538000 46680 19459 46565 19544 17015 46857 22378 28174 22187 5609.4 44171 18382 46544 20501 19087 45525 22516 29153 21900 5934 1 1 1 1 1 1 1 1 1 1 610 937 535 569 682 682 1542 ATSPGPTDLETR 12 Phospho (STY) _ATS(ph)PGPTDLETR_ AT(0.047)S(0.953)PGPTDLETR AT(-13.11)S(13.11)PGPT(-47.18)DLET(-95.17)R 0 0 1 0 Q5VT06 Q5VT06 Q5VT06 CEP350 Centrosome-associated protein 350 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.373474121094 2 662.792664 1323.57078 34673.1443819595 1.638 0.0010857 172870 114.58 172880 114.58 777.372018459789 44.317 0.7765 44.317 43.875 44.652 0 47 26 2 0.969330237874971 0.000655871706356327 0.0185370741282768 2.1654E-07 1 10157 164 102.04 4 18997000 19132 17195 21726 17286 17126 19571 16104 18857 16713 8271.8 18114 16244 21670 17780 17637 19522 16458 19192 16465 8225.4 1 1 1 1 1 1 1 1 1 1 611 1199 536 570 683 683 2098 ATSPLCTSTASMVSSSPSTPSNIPQKPSQPAAK 33 Phospho (STY) _ATSPLCT(ph)STASMVSSSPSTPSNIPQKPSQPAAK_ AT(0.325)S(0.254)PLCT(0.416)S(0.005)TASMVSSSPSTPSNIPQKPSQPAAK AT(-1.07)S(-2.13)PLCT(1.07)S(-19.12)T(-37.79)AS(-62.72)MVS(-142.62)S(-156.29)S(-169.93)PS(-201.07)T(-207.66)PS(-220.22)NIPQKPS(-238.57)QPAAK 0 0 1 1 P30622 P30622 P30622 CLIP1 CAP-Gly domain-containing linker protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1022.02691650391 4 849.651923 3394.57859 30977.2301648732 1.8046 0.0015333 202290 171.87 202290 171.87 1022.02551966213 67.054 0.61054 67.054 66.776 67.387 1.4211E-14 85 20 6 0.968202878797448 0.00583806504533753 0.121906655480862 8.5649E-19 1 15774 245.69 228.89 13 33027000 7631.4 6832.3 9519.2 6190 4649 7951.2 3992.7 7898.4 9997.8 8635.6 7228.3 6450.5 9415.9 6423.2 5001.8 7906.9 4260.2 8184.9 9610.1 8314.2 1 1 1 1 1 1 1 1 1 1 612 518 537 571 684 684 4443 ATSPLVSLYPALECR 15 Phospho (STY) _ATS(ph)PLVSLYPALECR_ AT(0.091)S(0.909)PLVSLYPALECR AT(-10.01)S(10.01)PLVS(-43.33)LY(-90.33)PALECR 0 0 1 0 Q96G74 Q96G74 Q96G74 OTUD5 OTU domain-containing protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.005859375 3 586.282834 1755.82667 38853.2447123914 2.006 0.0011761 130290 76.387 130290 76.388 662.670068043105 95.919 0.80915 95.919 95.509 96.318 0 107 27 5 0.908300234637562 0.00513110884937762 0.113983163735095 6.9977E-05 1 22260 123.14 88.84 4 55591000 2134.2 2782.2 2444.4 3572.9 2697 2746.4 2984.6 2551.7 3245.9 5565.3 2020.7 2632.7 2447.2 3607 2726.4 2797.8 3031.4 2734.8 3191.7 5299.4 1 1 1 1 1 1 1 1 1 1 613 1682 538 572 685 685 3097 ATSRGSNSGMDSNIDLTIVEDEEEESVALEQAQK 34 Oxidation (M),Phospho (STY) _ATSRGSNS(ph)GM(ox)DSNIDLTIVEDEEEESVALEQAQK_ ATSRGSNSGM(1)DSNIDLTIVEDEEEESVALEQAQK AT(0.219)S(0.219)RGS(0.219)NS(0.34)GMDS(0.004)NIDLTIVEDEEEESVALEQAQK ATSRGSNSGM(299.97)DSNIDLTIVEDEEEESVALEQAQK AT(-1.91)S(-1.91)RGS(-1.91)NS(1.91)GMDS(-19.47)NIDLT(-105.32)IVEDEEEES(-246.7)VALEQAQK 0 1 1 1 O95810 O95810 O95810 SDPR Serum deprivation-response protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1052.75 4 937.914931 3747.63062 30263.0566856508 1.6449 0.0015427 122170 114.58 122170 114.58 1052.99674412456 93.714 0.60716 93.714 93.447 94.054 0 76 20 5 0.974271523871088 0.00352011575831096 0.0956279645139465 1.0605E-34 1 21807 299.97 283.3 7 43668000 2012 3149 2393.2 3947.3 3770.4 2323.1 4671.5 3631.9 3204.1 67468 1905.3 2979.3 2406.4 3978.1 3756.3 2544.5 4671.7 5625.3 3223.7 63614 1 1 1 1 1 1 1 1 1 1 614 263 539 573 686 686 23 438 ATSSSSGSLSATGR 14 Phospho (STY) _ATSSSSGS(ph)LSATGR_ ATSSS(0.006)S(0.293)GS(0.699)LS(0.001)ATGR AT(-74.67)S(-48.43)S(-33.46)S(-20.56)S(-3.77)GS(3.77)LS(-28.4)AT(-63.45)GR 0 0 1 0 Q03252 Q03252 Q03252 LMNB2 Lamin-B2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.374328613281 2 674.790653 1347.56675 35305.2866667224 2.1749 0.0014676 169800 114.58 169810 114.58 789.372507572999 30.288 0.33083 30.288 30.103 30.434 0 23 10 3 0.981780735543277 0.000891409076229343 0.0349377098965095 3.1402E-10 1 6754 179.08 157.52 8 10600000 12150 10261 12408 12569 8967 14252 11984 12814 12674 2739 11498 9705.9 12443 12792 9346.2 14198 12073 12991 12476 2875.7 1 1 1 1 1 1 1 1 1 1 615 859 540 574 687 687 1389 ATSSTQSLAR 10 Phospho (STY) _ATSS(ph)TQSLAR_ ATS(0.049)S(0.718)T(0.232)QSLAR AT(-32.34)S(-11.64)S(4.9)T(-4.9)QS(-47.85)LAR 0 0 1 0 Q14980 Q14980 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.8310546875 2 551.250435 1100.48632 37666.2914471829 1.8101 0.00099784 207860 114.58 207860 114.58 665.831720219844 32.06 0.53695 32.06 31.73 32.267 0 39 14 4 0.879463866620596 0.00446613704328701 0.290709403345971 1.9221E-09 1 7152 180.47 119.75 5 49784000 22909 32749 24039 31926 40223 24177 39555 30931 30661 3413.6 21682 30932 24338 32707 39845 24670 40052 30868 30630 3930.1 1 1 1 1 1 1 1 1 1 1 616 1036 541 575 688 688 1786 ATSTSDMLLK 10 Phospho (STY) _ATS(ph)TSDMLLK_ AT(0.024)S(0.883)T(0.046)S(0.046)DMLLK AT(-15.74)S(12.79)T(-12.79)S(-12.79)DMLLK 0 0 1 0 Q9NW64 Q9NW64 Q9NW64 RBM22 Pre-mRNA-splicing factor RBM22 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.920654296875 2 573.759247 1145.50394 34158.0597498828 2.4412 0.0014007 399400 229.16 399410 229.16 802.920044118818 74.746 0.49565 74.746 74.449 74.945 0 35 16 3 0.670206836729191 0.00170272625034756 0.0732211855145281 2.1474E-09 1 17545 176.62 128.72 4 14959000 20082 25113 21580 24565 28474 20785 31198 27438 27210 14628 19008 23721 21733 25195 28523 21113 31517 27705 27017 14409 1 1 1 1 1 1 1 1 1 1 617 2052 542 576 689 689 3713 ATSTSPNSQSSK 12 Phospho (STY) _ATSTS(ph)PNSQSSK_ ATSTS(1)PNSQSSK AT(-85.45)S(-50.98)T(-36.73)S(36.73)PNS(-52.92)QS(-81.95)S(-92.13)K 0 0 1 0 Q9Y520 Q9Y520 Q9Y520 PRRC2C Protein PRRC2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.931884765625 2 637.766646 1273.51874 33375.1567636054 2.4099 0.001537 359320 229.16 359320 229.16 866.929637475188 28.522 0.34557 28.522 28.349 28.695 0 38 11 4 0.979212903488714 0.00260459603098115 0.0497045642537668 5.4927E-24 1 6338 286.78 244.39 7 32866000 23617 26800 22822 27013 11146 21187 12992 22479 28631 941.2 22345 25318 22887 27630 12041 21515 13565 22527 27587 1406.5 1 1 1 1 1 1 1 1 1 1 618 2289 543 577 690 690 4228 ATTPADGEEPAPEAEALAAAR 21 Phospho (STY) _ATT(ph)PADGEEPAPEAEALAAAR_ AT(0.216)T(0.784)PADGEEPAPEAEALAAAR AT(-5.6)T(5.6)PADGEEPAPEAEALAAAR 0 0 1 0 Q96S44 Q96S44 Q96S44 TP53RK TP53-regulating kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.376037597656 3 706.651079 2116.93141 35959.8602614452 1.5041 0.0010629 108100 76.39 108100 76.391 783.376941844729 67.767 0.56492 67.767 67.53 68.095 0 50 18 4 0.97990397115136 0.00319214394220596 0.0277026582496233 8.4229E-05 1 15917 109.91 93.222 2 15627000 11281 10314 11264 11312 12399 11599 11718 14151 11929 20616 10675 9749.2 11356 11558 12506 11684 11966 14716 11761 19740 1 1 1 1 1 1 1 1 1 1 619 1742 544 578 691 691 4740 ATVPVAAATAAEGEGSPPAVAAVAGPPAAAEVGGGVGGSSR 41 Phospho (STY) _ATVPVAAATAAEGEGS(ph)PPAVAAVAGPPAAAEVGGGVGGSSR_ ATVPVAAATAAEGEGS(1)PPAVAAVAGPPAAAEVGGGVGGSSR AT(-74.11)VPVAAAT(-33.65)AAEGEGS(33.65)PPAVAAVAGPPAAAEVGGGVGGS(-123.93)S(-123.17)R 0 0 1 0 O75179 O75179 O75179 ANKRD17 Ankyrin repeat domain-containing protein 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 949.732177734375 4 891.938706 3563.72572 31571.0882691082 1.881 0.0016777 64231 57.29 64233 57.292 949.4796370534 81.805 0.69619 81.805 81.477 82.173 0 97 23 6 0.955493774172604 0.00642215877510168 0.153177382674827 2.7939E-09 2 19137 163.87 155.54 5 28389000 5171.2 6081.2 5067.4 7094.6 4987.6 5878.1 5707.4 5870.3 5964 29663 4892.9 5750.5 5108.9 7203.1 5076.5 6002 5782.1 6782.4 5873.8 28067 2 2 2 2 2 2 2 2 2 2 620 175 545 579 692;693 692 303 ATVTPSPVK 9 Phospho (STY) _ATVTPS(ph)PVK_ AT(0.002)VT(0.385)PS(0.613)PVK AT(-25.56)VT(-2.02)PS(2.02)PVK 0 0 1 0 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 479.942749023438 3 327.166847 978.478713 45034.8132213147 1.4379 0.00047043 466960 152.78 466970 152.78 479.942237088385 49.475 1.1588 49.475 48.853 50.012 0 134 39 6 0.989933118761552 0.00190211318347813 0.0524933445437398 0.0053324 1 11422 84.821 43.421 3 608070000 12284 11310 11091 11295 8777.8 11597 10838 12346 10519 3948.9 11619 10684 11212 11603 9073.2 11628 10925 12474 10393 4004.1 1 1 1 1 1 1 1 1 1 1 621 1913 546 580 694 694 3471;4762 ATVTPSPVK 9 2 Phospho (STY) _ATVT(ph)PS(ph)PVK_ AT(0.063)VT(0.937)PS(1)PVK AT(-11.72)VT(11.72)PS(40.51)PVK 0 0 2 0 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.393371582031 2 530.229798 1058.44504 37204.5131428656 2.5651 0.0013601 432200 229.16 432200 229.17 759.393560983332 49.614 0.9558 49.614 48.969 49.925 0 43 32 2 0.966025602069357 0.000411340082570532 0.0141561636719558 0.013212 1 11447 86.114 60.729 3 8562800 17719 15777 17103 15420 17308 15779 15901 16461 16241 49237 16765 14902 17257 15860 17533 15902 16262 17969 16011 46743 1 1 1 1 1 1 1 1 1 1 622 1913 546 581 695 695 3471;4762 ATVTPSPVKGK 11 Phospho (STY) _ATVTPS(ph)PVKGK_ ATVT(0.047)PS(0.953)PVKGK AT(-53.56)VT(-13.04)PS(13.04)PVKGK 0 0 1 1 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.370544433594 3 388.872323 1163.59514 39421.9925253665 1.1631 0.0004523 589300 229.16 589300 229.16 618.035957147789 48.039 0.99288 48.039 47.541 48.534 -7.1054E-15 140 33 6 0.988585584796168 0.0126923249396838 0.217237083631295 0.00013916 1 11082 108.89 67.61 3 2284300000 71510 52422 70864 53254 48290 65117 56168 63995 55195 7997 67664 49526 71132 54819 50448 64741 56770 64476 54502 9011.2 1 1 1 1 1 1 1 1 1 1 623 1913 547 582 696 696 3471;4762 ATVTPSPVKGK 11 2 Phospho (STY) _ATVT(ph)PS(ph)PVKGK_ AT(0.003)VT(0.997)PS(1)PVKGK AT(-25.77)VT(25.77)PS(56.89)PVKGK 0 0 2 1 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 966.536315917969 2 622.788011 1243.56147 32491.7768067855 2.3726 0.0014776 551950 343.75 551950 343.75 966.533873224046 48.94 0.6867 48.94 48.709 49.396 7.1054E-15 52 23 3 0.962908376429023 0.000524380182402612 0.009273363569812 2.9609E-05 1 11372 134.49 113.59 3 15486000 10793 10161 12316 9582.1 8842.3 11171 9493.2 10997 11297 6340.3 10219 9595 12273 9899.5 9189.2 11136 9681.3 11229 11070 6224.7 1 1 1 1 1 1 1 1 1 1 624 1913 547 583 697 697 3471;4762 AVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEPK 34 Phospho (STY) _AVAAAAAAAVT(ph)PAAIAAATTTLAQEEPVAAPEPK_ AVAAAAAAAVT(1)PAAIAAATTTLAQEEPVAAPEPK AVAAAAAAAVT(77.78)PAAIAAAT(-77.78)T(-79.01)T(-79.01)LAQEEPVAAPEPK 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 914.498840332031 4 799.41407 3193.62717 32958.8512110135 1.6513 0.0013201 143330 114.58 143330 114.58 914.497402656401 100.64 0.25146 100.64 100.48 100.73 1.4211E-14 24 8 6 0.81327072909112 0.000580051056042907 0.00799380818244164 2.0354E-06 1 23553 137.57 123.42 4 46883000 14675 14449 14296 16460 15094 15384 12862 27354 17309 330530 13885 13661 14423 16760 15243 16241 13321 36934 16890 311860 1 1 1 1 1 1 1 1 1 1 625 1436 548 584 698 698 4658 AVDITTPK 8 Phospho (STY) _AVDITT(ph)PK_ AVDIT(0.114)T(0.886)PK AVDIT(-8.92)T(8.92)PK 0 0 1 0 O75475 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.889526367188 2 462.725533 923.436514 37941.9925696854 1.9909 0.00092124 495250 229.16 495250 229.16 691.888587699547 57.689 0.68844 57.689 57.305 57.993 0 73 23 4 0.781404177933313 0.0081686925630773 0.701659253434781 0.00097427 1 13480 120.65 82.567 2 74441000 36636 52761 32669 50384 72494 38133 70641 49872 53692 9347.5 34652 49828 33608 51681 71173 38934 71531 49852 53697 9956 1 1 1 1 1 1 1 1 1 1 626 188 549 585 699 699 4337 AVDKPPSPSPIEMK 14 Phospho (STY) _AVDKPPS(ph)PSPIEMK_ AVDKPPS(0.97)PS(0.03)PIEMK AVDKPPS(15.12)PS(-15.12)PIEMK 0 0 1 1 Q9H165 Q9H165 Q9H165 BCL11A B-cell lymphoma/leukemia 11A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.421081542969 3 525.921125 1574.74155 35632.0399002914 2.2445 0.0011804 435740 229.16 435740 229.16 755.418249906173 66.6 0.66118 66.6 66.26 66.921 0 80 22 4 0.943787230307728 0.00595877432690524 0.163286630726897 1.3966E-05 1 15602 136.04 111.45 2 42135000 42436 6058.4 45144 6334.1 9223 42233 9615.4 19211 6123.7 10538 40166 5724.7 44863 7063.7 11483 40462 9673.2 20479 6190.4 10367 1 1 1 1 1 1 1 1 1 1 627 1910 550 586 700 700 3466 AVDPEDDFQR 10 Unmodified _AVDPEDDFQR_ 0 0 0 0 Q99848 Q99848 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.849853515625 2 596.267467 1190.52038 36893.0465666942 2.4343 0.0014515 192160 114.58 192170 114.58 710.847781587058 51.245 0.49637 51.245 51.021 51.517 0 38 16 3 0.926297611820797 0.0012544464613242 0.0236581445607584 6.0379E-06 1 11909 158.57 127.26 1 14685000 23085 23565 22433 23311 17771 22020 18411 21497 23910 10487 21842 22259 22571 23930 18324 22143 18861 21899 23359 10373 1 1 1 1 1 1 1 1 1 1 628 1794 551 587 701 701 AVELLGDIVQNCSLEDSQIEK 21 Unmodified _AVELLGDIVQNCSLEDSQIEK_ 0 0 0 0 P31930 P31930 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 940.504028320313 3 787.393178 2359.15771 31832.3587859565 2.2279 0.0017542 194030 152.77 194030 152.78 940.501442394796 100.35 0.16621 100.35 100.28 100.45 0 12 5 4 0.880285762570437 0.00202259103091215 0.0303808846838337 3.1749E-08 1 23457 167.22 147.9 1 40309000 12605 10465 11145 12077 8462.5 11292 11319 14618 13606 139610 11922 9895.1 11279 12289 8788.6 11659 11447 18741 13328 131790 1 1 1 1 1 1 1 1 1 1 629 522 552 588 702 702 AVFPSIVGRPR 11 Unmodified _AVFPSIVGRPR_ 0 0 0 1 P60709;Q6S8J3;A5A3E0;P0CG38;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 P63261 ACTB;POTEE;POTEF;POTEI;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 476.627899169922 3 400.240018 1197.69823 45730.937852857 0.67134 0.0002687 190850 76.388 190860 76.388 476.627561438563 66.712 0.54504 66.712 66.46 67.005 0 41 18 3 0.961987451214368 0.00155348717177824 0.0523698685209293 7.9614E-10 1 15680 183.03 146.34 1 7574400 7547.1 5547.4 7682.1 5128.6 8100.5 7458.9 9107 8021.5 6147.7 2029.3 7142 5238 7734.7 5328.9 8207.2 7383.2 9140.8 8085.5 6191.5 2096.5 1 1 1 1 1 1 1 1 1 1 630 742;783;766 553 589 703 703 AVFPSIVGRPR 11 Phospho (STY) _AVFPS(ph)IVGRPR_ AVFPS(1)IVGRPR AVFPS(86.7)IVGRPR 0 0 1 1 P60709;Q6S8J3;A5A3E0;P0CG38;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 P63261 ACTB;POTEE;POTEF;POTEI;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.283599853516 3 426.895462 1277.66456 43549.6144852137 0.96695 0.00041278 178940 76.388 178940 76.388 503.28365307736 72.613 1.2337 72.613 71.721 72.955 0 91 41 4 0.883405346566692 0.00202797652897206 0.0498845639660099 0.0047357 1 17020 86.699 61.226 1 21641000 7414.9 7022 7005.9 6779.6 11292 6825.7 10689 8217.6 6592.3 999.09 7014.9 6632 7129.4 6976.6 11194 6859 10798 8219 6678.3 1131 1 1 1 1 1 1 1 1 1 1 631 742;783;766 553 590 704 704 1227 AVFVDLEPTVIDEVR 15 Unmodified _AVFVDLEPTVIDEVR_ 0 0 0 0 Q9BQE3;P68363;Q71U36 Q9BQE3;P68363 P68363 TUBA1C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 966.540344238281 2 851.456527 1700.8985 31670.5187829534 1.7607 0.0014992 134570 114.58 134570 114.58 966.53936026274 100.04 0.13924 100.04 99.975 100.11 0 13 4 5 0.887421799035618 0.0109997075630252 0.37292815472463 9.194E-32 2 23323 322.77 258.4 1 215840000 108650 169230 121440 173420 118640 123360 133070 157420 185570 101970 102860 159890 121540 177010 120820 126500 136200 159660 180880 99663 2 2 2 2 2 2 2 2 2 2 632 789;1805 554 591 705;706 706 AVIDFKSNGHIYDNR 15 Phospho (STY) _AVIDFKS(ph)NGHIYDNR_ AVIDFKS(1)NGHIYDNR AVIDFKS(44.38)NGHIY(-44.38)DNR 0 0 1 1 O15294 O15294 O15294 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.391906738281 3 610.284114 1827.83051 36097.0268603004 1.8715 0.0011421 250330 152.77 250330 152.77 763.390326177985 80.743 0.731 80.743 80.374 81.105 0 110 24 6 0.967302191621512 0.0064982799051812 0.0639571754898327 0.037431 1 18856 48.288 31.603 2 107820000 6599 12690 5054.7 11622 3659.2 6048 3695.6 7762.1 12676 14702 6238.5 11982 5161.5 11909 3804.8 6360.2 4006 8162.5 12126 14023 1 1 1 1 1 1 1 1 1 1 633 87 555 592 707 707 150 AVIVSSPK 8 Phospho (STY) _AVIVSS(ph)PK_ AVIVS(0.064)S(0.936)PK AVIVS(-11.66)S(11.66)PK 0 0 1 0 Q14966 Q14966 Q14966 ZNF638 Zinc finger protein 638 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.899780273438 2 440.730619 879.446684 38640.0928383038 2.141 0.00094359 519960 229.16 519960 229.16 669.894183521551 56.294 0.91961 56.294 55.833 56.752 0 80 30 4 0.986906873787326 0.000994966101610697 0.0209366352838904 0.0014518 1 13086 104.39 76.652 2 137360000 21291 30480 21672 30528 16078 20677 17402 25724 34749 7537.8 20148 28793 21735 31184 16682 21243 18125 25835 33551 7693.1 1 1 1 1 1 1 1 1 1 1 634 1033 556 593 708 708 1773 AVKKTPK 7 Phospho (STY) _AVKKT(ph)PK_ AVKKT(1)PK AVKKT(51.44)PK 0 0 1 2 P16401 P16401 P16401 HIST1H1B Histone H1.5 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.046569824219 3 284.496528 850.467754 NaN NaN NaN NaN NaN NaN NaN NaN 36.536 1 36.536 36.036 37.036 0 NaN NaN NaN 0.043537 1 8236 51.436 15.925 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 635 407 557 594 709 709 4400 AVNLGLNHLDSVPTTLGALK 20 2 Phospho (STY) _AVNLGLNHLDS(ph)VPT(ph)TLGALK_ AVNLGLNHLDS(0.667)VPT(0.667)T(0.667)LGALK AVNLGLNHLDS(0)VPT(0)T(0)LGALK 0 0 2 0 Q8N456 Q8N456 Q8N456 LRRC18 Leucine-rich repeat-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.604431152344 4 549.023364 2192.06435 39896.4457182147 1.7704 0.000972 208700 114.58 208700 114.58 663.85478134385 89.363 1.1037 89.363 88.708 89.812 0 93 37 4 0.746160535161388 0.00204045853778311 0.0568471249934243 0.041016 1 20770 48.848 22.7 3 14925000 5237.6 5965.7 5823.9 5727.4 4998.5 4860.4 4991.8 4778.9 6453.8 5417.8 4958.3 5634.3 5820.5 5881.3 5122.5 4919.7 5121.5 4960 6306 5212.1 1 1 1 1 1 1 1 1 1 1 636 1466 558 595 710 710 2713;4678;4679 AVPIGTPPK 9 Phospho (STY) _AVPIGT(ph)PPK_ AVPIGT(1)PPK AVPIGT(73.78)PPK 0 0 1 0 Q86TB9 Q86TB9 Q86TB9 PATL1 Protein PAT1 homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 473.278381347656 3 320.503571 958.488884 46752.5274377165 0.13588 4.355E-05 476670 152.78 476670 152.78 473.278518899305 62.553 0.75217 62.553 62.093 62.845 0 40 25 2 0.687196481983943 0.000808160093182665 0.0125295781308503 0.013567 1 14707 73.781 34.999 1 4727900 15588 11527 15071 12553 12490 14669 12769 14000 13821 2578.9 14749 10895 15174 12860 12832 14605 13013 14146 13592 2752.4 1 1 1 1 1 1 1 1 1 1 637 1361 559 596 711 711 4642 AVPMAPAPASPGSSNDSSAR 20 Phospho (STY) _AVPMAPAPAS(ph)PGSSNDSSAR_ AVPMAPAPAS(0.989)PGS(0.01)S(0.001)NDSSAR AVPMAPAPAS(20.04)PGS(-20.04)S(-29.59)NDS(-74.84)S(-80.97)AR 0 0 1 0 Q66K74 Q66K74 Q66K74 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1090.509765625 2 975.424779 1948.83501 30340.4217256026 1.3282 0.0012956 117470 114.58 117470 114.58 1090.50844708408 52.695 0.37711 52.695 52.435 52.812 0 42 12 4 0.990373207433247 0.000646345103920675 0.0206609219871908 8.7374E-17 1 12254 246.12 219.16 5 15109000 5966.3 4432.4 7632 4839.4 2731.7 7405.2 3111.8 5654.3 5935.4 4562.5 5651.9 4189.5 7529.9 4985.3 3069.5 7294.7 3226.6 5877 5736.7 4427 1 1 1 1 1 1 1 1 1 1 638 1224 560 597 712 712 2157 AVPPVSPELR 10 Phospho (STY) _AVPPVS(ph)PELR_ AVPPVS(1)PELR AVPPVS(140.78)PELR 0 0 1 0 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.374206542969 2 572.791739 1143.56892 37604.040728074 1.6887 0.00096728 200040 114.58 200040 114.58 687.373026506644 62.815 2.9699 62.815 61.741 64.711 0 311 101 4 0.983589250687463 0.00319459613638882 0.137931051671524 3.7979E-06 2 14583 140.78 96.792 1 90947000 59433 46585 62082 52785 38753 58996 44256 52426 50535 18430 56248 44043 62085 53919 40788 58810 44957 53397 49596 18568 2 2 2 2 2 2 2 2 2 2 639 1699 561 598 713;714 713 3119 AVPVESPVQKV 11 Phospho (STY) _AVPVES(ph)PVQKV_ AVPVES(1)PVQKV AVPVES(126.32)PVQKV 0 0 1 1 Q8TB61 Q8TB61 Q8TB61 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 564.324096679688 3 411.547728 1231.62135 42564.3462686787 1.0827 0.0004456 371220 152.78 371220 152.78 564.32352251829 65.667 0.52703 65.667 65.399 65.926 0 51 17 4 0.986092719439359 0.00272286820504048 0.0535613089341571 6.8211E-05 1 15412 126.32 97.343 1 18592000 8161.6 4937.7 9041.2 5684.7 4428.9 7632.8 3989.7 6231.1 5304 2174.4 7726.3 4668.7 8996.1 5822.6 4761.8 7550.3 4118.3 6370.1 5177.8 2191.6 1 1 1 1 1 1 1 1 1 1 640 1536 562 599 715 715 2822 AVSAECLGPPLDISTK 16 Phospho (STY) _AVS(ph)AECLGPPLDISTK_ AVS(1)AECLGPPLDISTK AVS(76.47)AECLGPPLDIS(-76.47)T(-76.55)K 0 0 1 0 O75037 O75037 O75037 KIF21B Kinesin-like protein KIF21B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.71728515625 3 579.942477 1736.8056 37190.6243053645 1.6273 0.00094375 263440 152.78 263440 152.78 733.055312678354 86.718 0.28577 86.718 86.447 86.732 0 13 9 2 0.685969728727958 0.000953603843648974 0.0169598830325052 0.0054345 1 20228 86.748 64.527 3 15692000 7604.5 6816.8 7765.3 8580.7 9176.6 7207.5 8735.9 8685.7 8181.3 12707 7196.4 6449.7 7826.5 8680.7 9222.3 7328.2 8898.3 9038 8096 12166 1 1 1 1 1 1 1 1 1 1 641 163 563 600 716 716 284 AVSEEQQPALK 11 Phospho (STY) _AVS(ph)EEQQPALK_ AVS(1)EEQQPALK AVS(105.65)EEQQPALK 0 0 1 0 Q8NE71 Q8NE71 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.978515625 3 427.202509 1278.5857 40725.7422861045 1.4138 0.000604 357620 152.77 357620 152.78 579.978047136762 52.653 0.40615 52.653 52.406 52.812 0 32 13 3 0.794964782896627 0.00147427397823292 0.0319326444031385 0.00015593 1 12239 105.65 83.894 1 11712000 9868.5 9748.2 9572.2 10333 9791 9867.2 8930.5 8206.9 9714.2 2860 9337.1 9212.2 9656.7 10567 9911.6 9895.7 9153.3 8382.6 9551.8 2883 1 1 1 1 1 1 1 1 1 1 642 1514 564 601 717 717 2779 AVSFHLVHR 9 Phospho (STY) _AVS(ph)FHLVHR_ AVS(1)FHLVHR AVS(100.55)FHLVHR 0 0 1 0 Q96GA3 Q96GA3 Q96GA3 LTV1 Protein LTV1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 458.913238525391 3 382.525369 1144.55428 46630.4790867627 0.032222 1.2326E-05 199690 76.387 199690 76.387 458.91314803178 60.549 1.016 60.549 60.023 61.039 0 94 34 5 0.913965789137226 0.00240640763224879 0.0711003184466208 0.00064779 1 14165 100.55 84.892 1 18163000 10856 8206.6 11244 8540.3 5965.2 13018 6004.7 9282.3 7826.5 1136.2 10274 7754.3 11235 8820.5 6367.4 12804 6160.2 9489.8 7645.1 1284.7 1 1 1 1 1 1 1 1 1 1 643 1683 565 602 718 718 3098 AVSPAPQSSSR 11 Phospho (STY) _AVS(ph)PAPQSSSR_ AVS(1)PAPQSSSR AVS(39.57)PAPQS(-39.57)S(-49.08)S(-69.43)R 0 0 1 0 Q9P275 Q9P275 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.347106933594 2 583.76371 1165.51287 37431.2082838655 2.2113 0.0012909 196280 114.58 196280 114.58 698.346009456461 28.049 0.25532 28.049 27.895 28.151 0 20 8 3 0.895574997543418 0.00152273230947864 0.0355528172126669 5.8907E-05 1 6249 131.36 104.1 4 11945000 11080 12027 10223 10878 7873 11692 6799.2 10354 11323 3629.3 10481 11355 10312 11252 8117.4 11673 7096.4 10547 10981 3657.1 1 1 1 1 1 1 1 1 1 1 644 2103 566 603 719 719 3799 AVSPLLLTTTNSSEGLSMGNYIGLINR 27 Phospho (STY) _AVSPLLLT(ph)TTNSSEGLSMGNYIGLINR_ AVS(0.25)PLLLT(0.706)T(0.021)T(0.021)NS(0.001)SEGLSMGNYIGLINR AVS(-4.51)PLLLT(4.51)T(-15.22)T(-15.22)NS(-28)S(-40.21)EGLS(-70.03)MGNY(-86.73)IGLINR 0 0 1 0 P19525 P19525 P19525 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1044.54150390625 3 967.819101 2900.43547 30767.2105473887 0.5158 0.0004992 78928 76.388 78928 76.388 1044.54105895222 101.38 0.22793 101.38 101.3 101.53 0 17 7 5 0.781367867543556 0.00294444201175299 0.0284904613256198 7.7533E-05 1 23828 122.39 107 8 46264000 5537.3 7756.4 7873.4 7387.6 7232.6 10658 7034.8 12900 8582.5 123990 5248.4 7325.1 7785.5 7660.4 7376.2 10798 7212.7 16589 8402.7 117050 1 1 1 1 1 1 1 1 1 1 645 439 567 604 720 720 4419 AVSPPHLDGPPSPR 14 Phospho (STY) _AVSPPHLDGPPS(ph)PR_ AVSPPHLDGPPS(1)PR AVS(-94.4)PPHLDGPPS(94.4)PR 0 0 1 0 P29590 P29590 P29590 PML Protein PML MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.296752929688 3 502.908207 1505.70279 43368.3910993856 0.81965 0.00041221 151890 76.388 151890 76.388 579.296071809298 52.874 0.32161 52.874 52.607 52.929 0 16 10 2 0.896486701772715 0.000258767963041131 0.00124814027991684 3.6924E-05 1 12322 131.48 105.89 2 15214000 9497.3 7802.4 10643 5962.9 7471 10680 7861.4 8932.7 7240 2083.7 8991.1 7360.1 10613 6310.6 7773.8 10477 7966.5 9090.7 7170 2168.8 1 1 1 1 1 1 1 1 1 1 646 501 568 605 721 721 828;829 AVSPPHLDGPPSPR 14 2 Phospho (STY) _AVS(ph)PPHLDGPPS(ph)PR_ AVS(1)PPHLDGPPS(1)PR AVS(99.88)PPHLDGPPS(99.88)PR 0 0 2 0 P29590 P29590 P29590 PML Protein PML MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.952087402344 3 529.563651 1585.66912 40452.9291129328 1.279 0.0006773 144250 76.388 144250 76.388 605.951379289133 59.839 2.047 59.839 58.876 60.923 -7.1054E-15 207 70 4 0.783952530831003 0.00286872802466474 0.084517476367559 0.0009986 1 13947 99.881 82.181 1 41350000 10861 8419.1 9885.4 8884 11911 11779 13468 10923 8964 4627.9 10273 7955.9 10038 9140 11986 11676 13511 11129 9035.9 4610.5 1 1 1 1 1 1 1 1 1 1 647 501 568 606 722 722 828;829 AVSPSSSEKR 10 Phospho (STY) _AVSPS(ph)SSEKR_ AVS(0.219)PS(0.778)S(0.003)SEKR AVS(-5.5)PS(5.5)S(-24.27)S(-43.97)EKR 0 0 1 1 Q76FK4 Q76FK4 Q76FK4 NOL8 Nucleolar protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.284301757813 3 376.507932 1126.50197 45067.3967994171 1.8114 0.000682 405770 152.78 405770 152.78 529.283447521756 30.009 0.53372 30.009 29.749 30.283 0 34 14 3 0.697820162690744 0.00260137048801062 0.0636188188300404 0.0036881 1 6697 91.784 64.258 4 12376000 19778 15738 19671 14795 10606 20252 12616 17038 16900 2872.2 18714 14862 19707 15337 11331 20021 12863 17301 16494 3098.9 1 1 1 1 1 1 1 1 1 1 648 1312 569 607 723 723 2342 AVTELNEPLSNEDR 14 Unmodified _AVTELNEPLSNEDR_ 0 0 0 0 Q04917 Q04917 Q04917 YWHAH 14-3-3 protein eta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.980834960938 3 529.593403 1585.75838 41153.7987996648 1.3763 0.00072889 144240 76.388 144240 76.388 605.980273963452 58.637 0.47068 58.637 58.433 58.904 0 44 15 4 0.508404534561629 0.00154496257064126 0.0198434724016571 8.2217E-05 1 13736 124.24 99.944 1 18218000 11451 10009 12456 9603 11942 11066 12271 12375 10148 3464.4 10839 9452.6 12479 9908.3 12152 11050 12417 12467 10104 3548.5 1 1 1 1 1 1 1 1 1 1 649 867 570 608 724 724 AVTEQGAELSNEER 14 Unmodified _AVTEQGAELSNEER_ 0 0 0 0 P27348 P27348 P27348 YWHAQ 14-3-3 protein theta MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.447387695313 2 766.862991 1531.71143 NaN NaN NaN NaN NaN NaN NaN NaN 41.865 1 41.865 41.365 42.365 0 NaN NaN NaN 0.010309 1 9560 91.307 67.276 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 650 485 571 609 725 725 AVTIANSPSKPSEK 14 Phospho (STY) _AVTIANS(ph)PSKPSEK_ AVTIANS(0.892)PS(0.108)KPSEK AVT(-46.72)IANS(9.15)PS(-9.15)KPS(-40.69)EK 0 0 1 1 Q8NEF9 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.08203125 3 503.583389 1507.72834 36826.5051252783 1.4035 0.00070676 455060 229.16 455070 229.16 732.746355854153 51.658 0.48892 51.658 51.374 51.863 7.1054E-15 51 16 4 0.923876213815612 0.00487252893287761 0.0223190982504286 6.501E-07 1 12018 148.26 125.38 4 68683000 36871 84725 37897 81200 37017 38196 31968 54658 93088 9841.2 34893 80017 38080 82897 37603 40430 34457 54484 89257 10532 1 1 1 1 1 1 1 1 1 1 651 1515 572 610 726 726 2781 AVTPSSEAK 9 Phospho (STY) _AVT(ph)PSSEAK_ AVT(0.823)PS(0.176)S(0.002)EAK AVT(6.71)PS(-6.71)S(-26.4)EAK 0 0 1 0 Q99700 Q99700 Q99700 ATXN2 Ataxin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.381652832031 2 485.218072 968.421592 36767.5975001745 2.5308 0.001228 472290 229.16 472290 229.16 714.380867162977 39.079 0.60986 39.079 38.754 39.364 0 61 20 4 0.98825705102652 0.00215784541475065 0.0779699939291085 0.00020593 1 8832 130.09 64.745 3 61176000 23518 39200 26034 34855 18554 22252 21772 26439 36560 5730.7 22263 37006 25984 35850 19329 22931 22412 26531 35447 6008 1 1 1 1 1 1 1 1 1 1 652 1784 573 611 727 727 4747 AVTPVPTK 8 Phospho (STY) _AVT(ph)PVPTK_ AVT(1)PVPTK AVT(34.58)PVPT(-34.58)K 0 0 1 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.893859863281 2 446.730619 891.446684 38321.7430407558 1.7984 0.00080341 512980 229.16 512980 229.16 675.893237321097 48.792 0.63514 48.792 48.505 49.14 0 67 21 4 0.638976888312201 0.00258781455303503 0.0289196003801884 0.0055327 1 11293 96.171 67.108 2 232310000 76860 83136 73891 75940 56888 71591 50628 70030 82727 7504.6 72718 78494 74355 78342 58676 71948 52715 70532 80266 8687.2 1 1 1 1 1 1 1 1 1 1 653 1273 574 612 728 728 4628 AVTPVPTKTEEVSNLK 16 Phospho (STY) _AVT(ph)PVPTKTEEVSNLK_ AVT(0.999)PVPT(0.001)KTEEVSNLK AVT(31.71)PVPT(-31.71)KT(-43.27)EEVS(-67.87)NLK 0 0 1 1 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 827.805725097656 3 598.307925 1791.90195 34523.6154079712 2.5701 0.0015377 383020 229.16 383020 229.16 827.80514573499 66.329 0.58603 66.329 66.049 66.635 0 101 19 7 0.971494699608771 0.00927586409187883 0.180267383731477 7.6586E-07 1 15540 157.73 129.15 4 479060000 38562 41380 41795 42104 33173 38678 33901 35940 43407 11625 36501 39095 41795 43132 34192 38910 34734 36507 42426 11778 1 1 1 1 1 1 1 1 1 1 654 1273 575 613 729 729 4628 AVTTPGK 7 Phospho (STY) _AVTT(ph)PGK_ AVT(0.059)T(0.941)PGK AVT(-11.99)T(11.99)PGK 0 0 1 0 P19338 P19338 P19338 NCL Nucleolin MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.345092773438 2 377.180762 752.34697 NaN NaN NaN NaN NaN NaN NaN NaN 38.95 1 38.95 38.45 39.45 0 NaN NaN NaN 0.038502 1 8838 73.573 28.237 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 655 437 576 614 730 730 4417 AVTTVTQSTPVPGPSVPPPEELQVSPGPR 29 Phospho (STY) _AVTTVTQSTPVPGPSVPPPEELQVS(ph)PGPR_ AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR AVT(-132.9)T(-132.27)VT(-120.01)QS(-105.59)T(-97.94)PVPGPS(-61.17)VPPPEELQVS(61.17)PGPR 0 0 1 0 P51610 P51610 P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1078.8955078125 3 1002.17242 3003.49543 30563.4776421403 1.9553 0.0019595 76222 76.387 76224 76.389 1078.8940450277 79.277 0.74588 79.277 78.986 79.732 0 113 25 5 0.960776869433147 0.0047380497548596 0.0700011822849849 1.7951E-08 1 18558 172.79 169.79 7 59454000 3632 4641.9 2758.4 3811.2 3431 3508.8 3748.8 4190.5 5321.2 19908 3433.5 4380.3 2836.6 3959.1 3448 3576.6 3843.7 4776.8 5183.7 18842 1 1 1 1 1 1 1 1 1 1 656 681 577 615 731 731 1141 AVVLPGGTATSPK 13 Phospho (STY) _AVVLPGGTATS(ph)PK_ AVVLPGGTAT(0.014)S(0.986)PK AVVLPGGT(-83.81)AT(-18.61)S(18.61)PK 0 0 1 0 Q8N1G0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.665405273438 3 426.554882 1276.64282 41748.6530034361 1.7777 0.00075831 358160 152.78 358160 152.78 579.330253341413 67.929 0.51024 67.929 67.675 68.185 0 52 16 4 0.99588659287834 0.00316248982521418 0.0369002353140505 6.2881E-07 1 15939 140.03 122.3 3 20129000 5231.4 5555.2 6263.3 7601 5305.8 4851.5 5783.7 6470.1 7443.2 2025.8 4954.1 5259.5 6236.7 7635.4 5449.2 5009.8 5909.8 6488.3 7273.9 2057.3 1 1 1 1 1 1 1 1 1 1 657 1455 578 616 732 732 2695 AVVSPPK 7 Phospho (STY) _AVVS(ph)PPK_ AVVS(1)PPK AVVS(72.61)PPK 0 0 1 0 P49792;Q7Z3J3;P0DJD0;P0DJD1;A6NKT7;Q99666;O14715 P49792 P49792 RANBP2;RGPD4;RGPD1;RGPD2;RGPD3;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.361938476563 2 389.198954 776.383356 40146.9078815358 1.9908 0.00077481 588810 229.16 588810 229.16 618.361624487369 51.428 1.0141 51.428 50.791 51.806 0 74 34 3 0.902772769820157 0.0014048015227695 0.012003060720515 0.019127 1 11971 72.607 44.865 1 14182000 20643 22182 20500 21422 14402 19906 14338 17830 24553 4879.1 19533 20950 20576 22018 14984 20004 14878 18112 23793 5006.9 1 1 1 1 1 1 1 1 1 1 658 655 579 617 733 733 1092 AVVSPPKFVFGSESVK 16 Phospho (STY) _AVVS(ph)PPKFVFGSESVK_ AVVS(1)PPKFVFGSESVK AVVS(50.71)PPKFVFGS(-50.71)ES(-75.5)VK 0 0 1 1 P49792;Q7Z3J3;P0DJD0;P0DJD1;A6NKT7 P49792 P49792 RANBP2;RGPD4;RGPD1;RGPD2;RGPD3 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 816.131774902344 3 586.633973 1756.88009 35064.2434145028 1.7658 0.0010359 390640 229.16 390640 229.16 816.131171969877 91.609 1.5201 91.609 90.677 92.198 0 179 52 5 0.888765537764542 0.00230610215570805 0.0183109825255077 5.7794E-07 1 21277 140.17 123.1 3 34131000 21331 27105 21453 30257 15201 21400 16495 23211 31541 14749 20185 25623 21521 30733 15827 21896 17140 23656 30483 14425 1 1 1 1 1 1 1 1 1 1 659 655 580 618 734 734 1092 AVVVSPK 7 Phospho (STY) _AVVVS(ph)PK_ AVVVS(1)PK AVVVS(99.82)PK 0 0 1 0 O75909 O75909 O75909 CCNK Cyclin-K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.370056152344 2 390.206779 778.399006 40598.7890516071 0.96433 0.00037629 587290 229.16 587290 229.16 619.369491492462 53.019 0.65602 53.019 52.697 53.353 0 38 23 2 0.895852003253373 0.000377116672307819 0.00301398374325531 0.0032746 1 12343 99.815 15.867 1 59458000 45840 29152 41475 33522 27404 43929 26726 34353 33132 4513 43360 27564 41840 34320 28637 43457 27413 34966 32419 5044.6 1 1 1 1 1 1 1 1 1 1 660 205 581 619 735 735 355 AVVVSPKEENK 11 Phospho (STY) _AVVVS(ph)PKEENK_ AVVVS(1)PKEENK AVVVS(132.24)PKEENK 0 0 1 1 O75909 O75909 O75909 CCNK Cyclin-K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 492.786102294922 4 320.662797 1278.62208 45757.5956162141 0.59456 0.00019065 535990 171.87 535990 171.87 492.785731192165 50.917 0.48896 50.917 50.647 51.136 0 47 16 4 0.866089725428978 0.00143352718170493 0.00644429040223402 3.86E-05 1 11858 132.24 107.71 1 12333000 8997.1 8843.9 9411.5 7569.4 8596.6 10269 7162.4 8209.1 10077 1505.5 8515.1 8347.3 9440.4 7893.2 8754.5 10149 7439.4 8359.5 9819.1 1607.6 1 1 1 1 1 1 1 1 1 1 661 205 582 620 736 736 355 AVYDEQGTVDEDSPVLTQDR 20 Unmodified _AVYDEQGTVDEDSPVLTQDR_ 0 0 0 0 Q8WXX5 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.071228027344 3 746.344993 2236.01315 34203.7908432908 1.7571 0.0013114 102350 76.389 102350 76.391 823.069010068749 62.19 0.39804 62.19 61.978 62.376 0 25 13 2 0.639965176231673 0.00237127865564398 0.069175135521919 1.7109E-11 1 14614 201.52 171.04 1 23415000 8734.7 8558.5 7531.8 9290.8 6889.6 7473 8649 9351.2 9172 20636 8260.7 8089.1 7648.7 9465.6 7054.8 7634.1 8733.8 9929 9027.8 19648 1 1 1 1 1 1 1 1 1 1 662 1583 583 621 737 737 AYGSELYGPGRPLSPR 16 Phospho (STY) _AYGSELYGPGRPLS(ph)PR_ AYGSELYGPGRPLS(1)PR AY(-48.58)GS(-46.37)ELY(-38.62)GPGRPLS(38.62)PR 0 0 1 1 A7MCY6 A7MCY6 A7MCY6 TBKBP1 TANK-binding kinase 1-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.342956542969 3 600.620726 1798.84035 37900.0897423354 1.982 0.0011904 127180 76.387 127180 76.388 677.007967467882 63.358 0.70218 63.358 62.99 63.692 0 75 23 4 0.726468072784754 0.00393234881956446 0.0700741540363005 0.028783 1 14844 54.008 27.573 4 21103000 9761.4 10350 8978.4 10276 11959 8926.5 15434 11528 10620 6113.6 9233.8 9776.9 9128.8 10534 12004 9051.9 15412 11646 10683 6023.4 1 1 1 1 1 1 1 1 1 1 663 14 584 622 738 738 26 AYILVTPLK 9 Phospho (STY) _AYILVT(ph)PLK_ AYILVT(1)PLK AY(-60.28)ILVT(60.28)PLK 0 0 1 0 Q6P0N0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.467163085938 2 549.303951 1096.59335 36010.3164027987 2.099 0.001153 417190 229.16 417190 229.16 778.466474996879 90.703 0.43245 90.703 90.475 90.907 0 37 14 3 0.866298861314241 0.00101677368781171 0.0400724261721489 5.0343E-05 1 21126 136.96 110.28 2 15745000 23878 8755.6 23957 8322 7429.9 25841 8600.9 14135 8143.1 19192 22595 8268.6 23919 8852.8 8531.9 25009 8686.2 15211 8054.2 18398 1 1 1 1 1 1 1 1 1 1 664 1252 585 623 739 739 4621 AYLPDGYENENQLLNSQDC 19 Phospho (STY) _AYLPDGYENENQLLNS(ph)QDC_ AYLPDGYENENQLLNS(1)QDC AY(-124.2)LPDGY(-101.74)ENENQLLNS(101.74)QDC 0 0 1 0 Q9UFW8 Q9UFW8 Q9UFW8 CGGBP1 CGG triplet repeat-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.702270507813 3 774.978867 2321.91477 33512.4586337052 1.3898 0.0010771 98568 76.388 98570 76.389 851.701241279811 84.294 0.85676 84.294 83.956 84.813 0 111 29 5 0.988666251293127 0.00503512046114502 0.0381430119214952 1.9024E-05 1 19684 128.55 121.52 3 29569000 4569.2 5365.9 6763.3 5033 5199.9 6432.6 6578.5 6388.8 5902.8 14641 4331.9 5067 6667.6 5210.6 5388 6412.3 6611.7 6851.3 5853 13934 1 1 1 1 1 1 1 1 1 1 665 2138 586 624 740 740 3847 AYQDQISPVPGAPK 14 Phospho (STY) _AYQDQIS(ph)PVPGAPK_ AY(0.007)QDQIS(0.993)PVPGAPK AY(-21.45)QDQIS(21.45)PVPGAPK 0 0 1 0 Q969V6 Q969V6 Q969V6 MKL1 MKL/myocardin-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.354919433594 3 517.579868 1549.71777 37575.5877266503 1.6687 0.00086367 295170 152.77 295170 152.78 670.354232978629 61.611 0.44001 61.611 61.331 61.771 0 26 14 2 0.966210216116138 0.000297448870897721 0.00625564181296223 0.037111 1 14480 48.477 15.531 2 9537300 8284.2 8539.9 9381.9 10017 9918.9 8932.5 8358.9 10065 9082.6 5527.5 7843.1 8075.8 9387.5 10178 10013 9026.5 8603.3 10219 8931.1 5437.8 1 1 1 1 1 1 1 1 1 1 666 1640 587 625 741 741 3033 AYQQKPYPSPK 11 Phospho (STY) _AYQQKPYPS(ph)PK_ AYQQKPY(0.067)PS(0.933)PK AY(-37.22)QQKPY(-11.46)PS(11.46)PK 0 0 1 1 P39880 P39880 P39880 CUX1 Homeobox protein cut-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.38330078125 3 462.886632 1385.63807 38272.0659268124 2.7274 0.0012625 495070 229.16 495070 229.16 692.048233720321 49.61 0.67123 49.61 49.283 49.954 0 71 22 4 0.979996040791929 0.00167268958624999 0.00698461535518098 0.0090323 1 11500 72.898 53.827 3 25711000 20971 26186 22504 21860 24714 24899 30717 27002 26235 6735.4 19849 24712 22611 22758 25030 24861 30856 27206 26076 6967.1 1 1 1 1 1 1 1 1 1 1 667 568 588 626 742 742 916 AYRPPSGEK 9 Phospho (STY) _AYRPPS(ph)GEK_ AYRPPS(1)GEK AY(-42.43)RPPS(42.43)GEK 0 0 1 1 P30414 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 514.941223144531 3 362.165618 1083.47502 43474.4373011202 1.2958 0.0004693 421840 152.78 421840 152.78 514.940899485391 39.12 0.7547 39.12 38.697 39.452 0 80 25 4 0.800527812704628 0.00300509711724754 0.0558258911465477 0.018555 1 8839 58.32 37.991 2 49046000 16795 18314 17426 17384 15076 18400 14942 17780 18288 2427.4 15895 17296 17482 17923 15440 18394 15308 17932 17903 2697.2 1 1 1 1 1 1 1 1 1 1 668 516 589 627 743 743 841 AYSFCGTVEYMAPEVVNR 18 Oxidation (M),Phospho (STY) _AYS(ph)FCGTVEYM(ox)APEVVNR_ AYSFCGTVEYM(1)APEVVNR AYS(1)FCGTVEYMAPEVVNR AYSFCGTVEYM(155.86)APEVVNR AY(-63.56)S(41.84)FCGT(-41.84)VEY(-108.3)MAPEVVNR 0 1 1 0 Q15418;P51812;Q9UK32 Q15418 Q15418 RPS6KA1;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.031677246094 3 730.30749 2187.90064 34864.1873465571 1.7453 0.0012746 104600 76.387 104600 76.388 806.693539953722 78.615 0.6707 78.615 78.347 79.017 0 67 22 5 0.982681962860441 0.00344098959054868 0.0335274052129551 1.4377E-07 1 18422 155.86 133.29 4 16616000 6333.2 5421.7 5944.8 5929 5826.2 6567.8 5336.2 6026.6 6728.5 11932 5991.3 5124.6 6006 6067 5913.9 6570.4 5493.5 6425.6 6580 11375 1 1 1 1 1 1 1 1 1 1 669 1075 590 628 744 744 144 1858 AYSFCGTVEYMAPEVVNR 18 Phospho (STY) _AYS(ph)FCGTVEYMAPEVVNR_ AYS(1)FCGTVEYMAPEVVNR AY(-83.96)S(45.12)FCGT(-45.12)VEY(-132.4)MAPEVVNR 0 0 1 0 Q15418;P51812;Q9UK32 Q15418 Q15418 RPS6KA1;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.698608398438 3 724.975852 2171.90573 34736.1067478241 1.3809 0.0010011 105370 76.388 105370 76.389 801.698189572517 94.987 1.3059 94.987 94.543 95.849 0 154 45 6 0.976312388237679 0.00657497832803717 0.0358752144016362 8.1575E-13 1 22066 213.01 191.78 4 78254000 3599.4 3492.7 5146.8 4582.4 4114.7 5631.8 3930 5047.3 4815.5 17852 3411.8 3305.6 5080.6 4655.5 4234.8 5624.5 4033.6 5623.4 4713.9 16926 1 1 1 1 1 1 1 1 1 1 670 1075 590 629 745 745 1858 AYSPEYR 7 Phospho (STY) _AYS(ph)PEYR_ AYS(1)PEYR AY(-76.66)S(50.75)PEY(-50.75)R 0 0 1 0 Q9UDY2 Q9UDY2 Q9UDY2 TJP2 Tight junction protein ZO-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.77392578125 2 483.191858 964.369162 40756.605043829 1.4028 0.0006778 237140 114.58 237140 114.58 597.773568539669 41.144 1.141 41.144 40.714 41.855 0 138 39 5 0.949032673291162 0.00654699877533421 0.284068046871446 0.00071335 1 9364 128.12 74.955 3 80197000 31979 85272 36814 73025 19980 33829 18761 45623 91355 4633.5 30279 80484 36584 75098 21321 35815 21143 45445 87061 5418.9 1 1 1 1 1 1 1 1 1 1 671 2134 591 630 746 746 3837 AYSSFGGGRGSR 12 Phospho (STY) _AYSSFGGGRGS(ph)R_ AYSSFGGGRGS(1)R AY(-91.78)S(-77.67)S(-63.49)FGGGRGS(63.49)R 0 0 1 1 Q15056 Q15056 Q15056 EIF4H Eukaryotic translation initiation factor 4H MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 504.238739013672 3 427.850581 1280.52991 44490.0427398464 1.1326 0.00048458 178540 76.388 178540 76.388 504.238602510637 38.661 1.0096 38.661 38.354 39.364 0 101 34 5 0.908706781543736 0.00399509149482758 0.062029100151279 0.0032331 1 8732 91.845 71.515 4 173280000 24382 41291 23149 36271 21293 25074 24505 27597 40741 1713.4 23067 38977 23364 37368 21779 25668 25235 27636 39511 2252.1 1 1 1 1 1 1 1 1 1 1 672 1053 592 631 747 747 1819 AYTPPPPLGPHPNLGK 16 Phospho (STY) _AYT(ph)PPPPLGPHPNLGK_ AYT(1)PPPPLGPHPNLGK AY(-44.03)T(44.03)PPPPLGPHPNLGK 0 0 1 0 P42694 P42694 P42694 HELZ Probable helicase with zinc finger domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.401794433594 3 579.290429 1734.84946 35936.8157819066 1.9098 0.0011063 263730 152.77 263730 152.78 732.398904229925 69.175 1.5149 69.175 68.445 69.96 0 91 51 2 0.727823269706219 0.000729105511725414 0.00743465016655307 8.7649E-07 1 16184 141.86 120.23 2 17111000 11708 11716 11698 10792 14596 13759 15712 13418 13169 9586 11079 11062 11817 11185 14655 13672 15870 13761 13102 9336.9 1 1 1 1 1 1 1 1 1 1 673 591 593 632 748 748 4464 AYTPVVVTLWYR 12 Phospho (STY) _AYT(ph)PVVVTLWYR_ AYT(1)PVVVTLWYR AY(-111.38)T(53.66)PVVVT(-53.66)LWY(-137.79)R 0 0 1 0 P21127 P21127 P21127 CDK11B Cyclin-dependent kinase 11B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 888.970581054688 2 774.386535 1546.75852 33410.5548297374 1.0289 0.00079679 147960 114.58 147970 114.58 888.96808551893 101.34 0.25625 101.34 101.22 101.47 0 21 8 4 0.987256518792325 0.011393057537481 0.633527952290219 6.7049E-23 1 23797 275.85 223.98 4 216230000 32734 79138 34154 67512 80228 37585 109410 79309 75980 171140 30980 74693 34928 69548 79076 39854 109060 83093 76387 162980 1 1 1 1 1 1 1 1 1 1 674 449 594 633 749 749 4422 CALSSPSLAFTPPIK 15 Phospho (STY) _CALSSPSLAFT(ph)PPIK_ CALSSPSLAFT(1)PPIK CALS(-66.69)S(-60.53)PS(-45.75)LAFT(45.75)PPIK 0 0 1 0 Q8NFH5 Q8NFH5 Q8NFH5 NUP35 Nucleoporin NUP53 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.717346191406 3 556.940408 1667.7994 37616.8936009053 2.2071 0.0012292 274310 152.77 274310 152.78 710.049438932377 94.217 1.0371 94.217 93.617 94.654 0 58 35 2 0.983581036996549 0.0015652489134054 0.0421604254058609 0.00018982 1 21927 111.77 83.136 4 7585300 3724.1 5351.1 2883.8 5792.8 3406.1 3506.5 4011.5 4994.4 5008.8 10982 3520.8 5057.5 2959.6 5884.2 3435.2 3656.1 4081.6 5283 4899.9 10457 1 1 1 1 1 1 1 1 1 1 675 1523 595 634 750 750 2801;4692 CALSSPSLAFTPPIK 15 Phospho (STY) _CALSS(ph)PSLAFTPPIK_ CALS(0.087)S(0.904)PS(0.009)LAFTPPIK CALS(-10.18)S(10.18)PS(-20.13)LAFT(-120.06)PPIK 0 0 1 0 Q8NFH5 Q8NFH5 Q8NFH5 NUP35 Nucleoporin NUP53 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.048828125 3 556.940408 1667.7994 38231.50218378 1.4379 0.00080081 274310 152.78 274310 152.78 709.715743173187 95.069 0.51512 95.069 94.767 95.282 0 47 17 4 0.940762208792376 0.00228294768662382 0.0178652643761735 3.113E-08 1 22106 174.59 154.13 4 9647100 3208.6 5333.7 4284.4 4549.8 5832.8 4113.1 4484.9 5180.4 5747.5 7377.7 3040.2 5034.1 4268.8 4712.4 5809.9 4169.5 4664.6 5377.2 5617.5 7066.9 1 1 1 1 1 1 1 1 1 1 676 1523 595 634 751 751 2801;4692 CAPSAGSPAAAVGR 14 Phospho (STY) _CAPSAGS(ph)PAAAVGR_ CAPSAGS(1)PAAAVGR CAPS(-34.08)AGS(34.08)PAAAVGR 0 0 1 0 Q7L2J0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.879455566406 2 676.294851 1350.57515 35309.4299258274 1.4334 0.00096939 169430 114.58 169430 114.58 790.876892903112 40.873 0.62857 40.873 40.51 41.139 0 61 21 4 0.961690943941815 0.000866799099114086 0.0124074547609329 1.8293E-12 1 9268 213.16 191.24 2 44103000 16476 18993 16420 19199 18330 15566 16044 18529 20631 10599 15590 17943 16557 19642 18461 15822 16567 18791 20162 10409 1 1 1 1 1 1 1 1 1 1 677 1317 596 635 752 752 2353 CDFTEDQTAEFK 12 Acetyl (Protein N-term) _(ac)CDFTEDQTAEFK_ 1 0 0 0 P60660 P60660 P60660 MYL6 Myosin light polypeptide 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.396850585938 2 766.814121 1531.61369 33709.2954636694 1.9419 0.0014891 149420 114.58 149420 114.58 881.395178227539 72.283 0.55599 72.283 71.986 72.542 0 62 18 5 0.922577526698967 0.00338898878271615 0.0401828975082826 4.1474E-41 1 16955 238.32 210.7 1 62061000 49454 16592 46757 17130 19780 50371 18005 27616 17879 21385 46786 15677 46903 18089 21640 48760 18410 29227 17647 20776 1 1 1 1 1 1 1 1 1 1 678 741 597 636 753 753 CDGDASPPSPAR 12 Phospho (STY) _CDGDASPPS(ph)PAR_ CDGDASPPS(1)PAR CDGDAS(-51.8)PPS(51.8)PAR 0 0 1 0 Q14493 Q14493 Q14493 SLBP Histone RNA hairpin-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.830139160156 2 655.247566 1308.48058 34571.0827847367 1.8917 0.0012395 174870 114.58 174870 114.58 769.82847801681 29.548 0.34827 29.548 29.401 29.749 3.5527E-15 16 11 2 0.917506566087968 0.000377106487712768 0.00683011395204075 2.3951E-07 1 6602 162.72 154.5 2 7979400 10395 6752 10644 7484.1 6595.8 10152 5430.2 7352.4 7637.8 3680.1 9836.9 6382.5 10651 7682.6 6918 10028 5643.9 7594.4 7442.6 3635.5 1 1 1 1 1 1 1 1 1 1 679 1008 598 637 754 754 1711 CDILVQEELLASPK 14 Phospho (STY) _CDILVQEELLAS(ph)PK_ CDILVQEELLAS(1)PK CDILVQEELLAS(138.97)PK 0 0 1 0 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.719604492188 3 565.607206 1693.79979 37074.0042974092 2.3263 0.0013158 270110 152.78 270110 152.78 718.716804314156 92.419 0.80252 92.419 92.084 92.886 -1.4211E-14 85 27 5 0.984743825996099 0.00260596336440488 0.055959759781265 8.771E-07 1 21490 138.97 120.52 1 22709000 6729 5074.6 6104.7 5285 6199.2 6450.7 4555.2 5082.3 5639.4 14383 6365 4795 6181 5432.4 6263.2 6423.8 4745.5 5584.3 5518.4 13661 1 1 1 1 1 1 1 1 1 1 680 1699 599 638 755 755 3120 CDSSPDSAEDVRK 13 Phospho (STY) _CDSSPDS(ph)AEDVRK_ CDSS(0.001)PDS(0.999)AEDVRK CDS(-46.57)S(-32.33)PDS(32.33)AEDVRK 0 0 1 1 CON__P12763;P02765 CON__P12763 CON__P12763 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.643798828125 3 515.867749 1544.58142 38166.672031309 1.7337 0.00089435 296150 152.78 296150 152.78 668.643334499727 35.931 1.5307 35.931 35.681 37.211 7.1054E-15 139 52 4 0.96512111984001 0.00239844547912447 0.0189142976314519 2.6971E-05 1 8070 133.71 111.52 3 29844000 21836 12372 21209 11433 11840 20503 10754 14665 14341 4173.4 20660 11682 21276 11942 12556 20081 11097 15062 13998 4269.1 1 1 1 1 1 1 1 1 1 1 + 681 26 600 639 756 756 45 CDSVEHLR 8 Phospho (STY) _CDS(ph)VEHLR_ CDS(1)VEHLR CDS(76.23)VEHLR 0 0 1 0 Q7L8J4 Q7L8J4 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.800720214844 2 548.218081 1094.42161 36855.0120573402 1.6256 0.00089118 209010 114.58 209010 114.58 662.798986158514 35.501 0.43827 35.501 35.299 35.737 -7.1054E-15 33 14 3 0.875393064560115 0.00122887166538157 0.0436450718266502 0.015397 1 7985 76.228 41.473 1 10528000 21323 19483 20718 18115 19397 21874 20489 20936 18532 4263.4 20174 18397 20883 18743 19775 21753 20750 21166 18369 4499.1 1 1 1 1 1 1 1 1 1 1 682 1321 601 640 757 757 2367 CDVDIRK 7 Unmodified _CDVDIRK_ 0 0 0 1 P60709;Q562R1;P63261 P60709;P63261 P63261 ACTB;ACTBL2;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 455.263336181641 3 302.488493 904.443651 48420.0415819784 0.72107 0.00021811 505060 152.78 505060 152.78 455.263895814794 41.84 0.51315 41.84 41.512 42.025 0 27 17 2 0.849204987871925 0.00039348795307368 0.00709945514743287 0.013441 1 9559 81.297 39.795 1 10326000 19327 14229 19719 12593 21739 19744 22974 20520 16081 3211 18290 13432 19860 13145 21952 19487 23137 20650 16160 3498.5 1 1 1 1 1 1 1 1 1 1 683 742;783 602 641 758 758 CELLYEGPPDDEAAMGIK 18 Unmodified _CELLYEGPPDDEAAMGIK_ 0 0 0 0 P13639 P13639 P13639 EEF2 Elongation factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.083068847656 3 669.972786 2006.89653 34108.6825285513 1.8485 0.0012385 228030 152.78 228030 152.78 823.082611247428 86.499 0.69048 86.499 86.187 86.878 0 77 23 5 0.876158616783802 0.00200851838518152 0.0268491869890982 1.7102E-07 1 20160 153.72 124.4 1 17309000 9978.2 9282.6 10215 9647.4 8188.9 9898 9078.1 10088 10508 19416 9442.8 8771 10249 9887.4 8443.7 9949 9237.2 10697 10307 18516 1 1 1 1 1 1 1 1 1 1 684 378 603 642 759 759 CGEASPPSAACGSPASQLVATPSLELGPIPAGEEK 35 Phospho (STY) _CGEAS(ph)PPSAACGSPASQLVATPSLELGPIPAGEEK_ CGEAS(0.945)PPS(0.055)AACGSPASQLVATPSLELGPIPAGEEK CGEAS(12.36)PPS(-12.36)AACGS(-44.66)PAS(-75.05)QLVAT(-100.57)PS(-109.55)LELGPIPAGEEK 0 0 1 0 Q66K74 Q66K74 Q66K74 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 994.489562988281 4 879.657205 3514.59972 30818.5730646975 1.9856 0.0017467 130260 114.58 130260 114.58 994.739291825258 96.589 0.54811 96.589 96.26 96.808 1.4211E-14 86 18 6 0.970203545582151 0.00516389309649252 0.0557528400352752 2.9793E-08 2 22427 140.97 131.58 6 20265000 7722.7 8033.8 10539 7389.2 6816.7 8770.7 6893.7 8292.5 7630.7 45509 7318.2 7585.5 10405 7648.5 7139.2 8809.3 7033.7 9707.7 7498 43044 2 2 2 2 2 2 2 2 2 2 685 1224 604 643 760;761 761 2158 CGGVEQASSSPR 12 Phospho (STY) _CGGVEQASSS(ph)PR_ CGGVEQAS(0.03)S(0.007)S(0.964)PR CGGVEQAS(-15.11)S(-21.64)S(15.11)PR 0 0 1 0 Q5VZL5 Q5VZL5 Q5VZL5 ZMYM4 Zinc finger MYM-type protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.846435546875 2 657.760841 1313.50713 35198.4005819716 2.2084 0.0014526 174200 114.58 174200 114.58 772.340749631437 27.837 0.20166 27.837 27.723 27.925 0 21 6 4 0.974429559265028 0.000985520749585409 0.0216565282408894 0.025486 1 6194 61.989 47.754 3 11928000 7920.9 8268.1 7266 9163.9 7095.9 9447.3 6927.2 9368.6 10047 4240 7492.7 7815.7 7351.7 9359.1 7211.6 9463.9 7144.8 9528.1 9780.8 4209.2 1 1 1 1 1 1 1 1 1 1 686 1216 605 644 762 762 2140 CGSPREEKPAGEEAEMEK 18 Phospho (STY) _CGS(ph)PREEKPAGEEAEMEK_ CGS(1)PREEKPAGEEAEMEK CGS(162.71)PREEKPAGEEAEMEK 0 0 1 2 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.342956542969 4 529.21961 2112.84933 37919.290017451 1.9654 0.0010401 324770 171.87 324770 171.87 701.342606480055 44.571 0.49025 44.571 44.398 44.889 0 63 16 5 0.976045224629502 0.00265397954068751 0.0289095225158466 9.1474E-08 1 10248 162.71 135.32 1 25123000 39462 16627 43304 15686 11378 42274 11070 22037 16976 7391.2 37356 15701 42992 16590 13433 40947 11445 23112 16500 7469.7 1 1 1 1 1 1 1 1 1 1 687 1243 606 645 763 763 2191 CIACQAAKLSPR 12 Phospho (STY) _CIACQAAKLS(ph)PR_ CIACQAAKLS(1)PR CIACQAAKLS(80.63)PR 0 0 1 1 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.670227050781 3 485.559645 1453.6571 38944.5196220278 1.5059 0.0007312 314640 152.78 314640 152.78 638.335152156834 52.726 0.49342 52.726 52.463 52.956 0 76 16 6 0.913605378550622 0.00598727360113089 0.0821459903450774 0.006869 1 12258 80.632 62.715 1 62144000 21248 21925 24800 23060 15467 23800 15334 20118 24512 4426.7 20119 20719 24654 23620 16253 23785 15867 20456 23797 4633.8 1 1 1 1 1 1 1 1 1 1 688 654 607 646 764 764 1085 CIAVGESDGSIWNPDGIDPK 20 Unmodified _CIAVGESDGSIWNPDGIDPK_ 0 0 0 0 P49448;P00367 P49448 P49448 GLUD2;GLUD1 Glutamate dehydrogenase 2, mitochondrial;Glutamate dehydrogenase 1, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 863.774841308594 3 710.665121 2128.97353 33560.4485788538 1.1283 0.00080181 214980 152.78 214980 152.78 863.441341159261 88.198 0.46143 88.198 87.877 88.338 0 35 15 3 0.757692832317381 0.00332366566534454 0.0425434067371311 8.2344E-08 1 20564 159.19 137.18 1 15528000 7904 5620.3 8009 5060.9 10845 7956.4 11074 9626.6 6003.1 17438 7479.6 5306.1 8093.7 5277.1 10836 7899.6 11122 10117 6138.3 16643 1 1 1 1 1 1 1 1 1 1 689 279 608 647 765 765 CIFMSETQSSPTK 13 Phospho (STY) _CIFMSETQSS(ph)PTK_ CIFMSETQS(0.015)S(0.984)PT(0.001)K CIFMS(-69.36)ET(-51.72)QS(-18.05)S(18.05)PT(-32.45)K 0 0 1 0 O75928 O75928 O75928 PIAS2 E3 SUMO-protein ligase PIAS2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.330322265625 3 532.554225 1594.64085 38480.4524532519 2.2591 0.0012031 286870 152.77 286870 152.78 685.329655982019 73.841 0.45409 73.841 73.616 74.07 1.4211E-14 45 15 4 0.649839891144778 0.00133776991942747 0.0172429532022859 6.0593E-07 1 17347 141.34 104.57 5 14989000 10222 9119.6 10991 10040 12327 11609 10197 10614 9867.2 7559.2 9675.7 8620.3 11035 10278 12400 11568 10473 10913 9749.9 7363.5 1 1 1 1 1 1 1 1 1 1 690 207 609 648 766 766 360 CLGGRSPK 8 Phospho (STY) _CLGGRS(ph)PK_ CLGGRS(1)PK CLGGRS(79.66)PK 0 0 1 1 Q96S59 Q96S59 Q96S59 RANBP9 Ran-binding protein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.8798828125 2 477.714977 953.415401 37572.3864085125 1.7696 0.00084537 479710 229.16 479710 229.16 706.878132010569 35.528 0.37769 35.528 35.36 35.737 7.1054E-15 35 12 4 0.880993421875678 0.00193317715156921 0.0661754636075549 0.01221 1 7981 79.659 43.715 1 20240000 31490 25122 30337 24044 18111 29163 21534 26352 27067 3958.3 29793 23726 30471 24835 19154 28975 21907 26661 26472 4337.1 1 1 1 1 1 1 1 1 1 1 691 1744 610 649 767 767 3200 CLIKSPDR 8 Phospho (STY) _CLIKS(ph)PDR_ CLIKS(1)PDR CLIKS(55.45)PDR 0 0 1 1 P52948 P52948 P52948 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.913818359375 2 534.749017 1067.48348 36054.0188007733 2.0956 0.0011206 428540 229.16 428550 229.16 763.912553516942 48.913 0.39978 48.913 48.74 49.14 0 32 13 3 0.77390620599562 0.00114349890886235 0.0199459192668035 0.036087 1 11375 55.452 24.021 1 13007000 21819 27744 22306 31298 20041 23285 17935 23822 29225 13147 20648 26229 22401 31790 20452 23729 18666 24271 28358 12931 1 1 1 1 1 1 1 1 1 1 692 699 611 650 768 768 1171 CLTGFTGQK 9 2 Phospho (STY) _CLT(ph)GFT(ph)GQK_ CLT(1)GFT(1)GQK CLT(45.08)GFT(45.08)GQK 0 0 2 0 Q7Z3S9;Q04721 Q7Z3S9 Q7Z3S9 NOTCH2NL;NOTCH2 Notch homolog 2 N-terminal-like protein;Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 543.921508789063 3 391.146669 1170.41818 41979.1761857563 1.7058 0.00066722 390580 152.77 390580 152.77 543.920989945584 49.213 1.188 49.213 48.853 50.041 7.1054E-15 170 40 6 0.987943656436808 0.00326918188984592 0.0272723886944771 0.039814 1 11376 45.077 25.835 1 157620000 15126 10608 15764 11011 15379 14779 15071 13634 11886 2802.6 14316 10023 15831 11342 15622 14637 15268 13805 11863 2954.5 1 1 1 1 1 1 1 1 1 1 693 863 612 651 769 769 4513;4514 CLTGFTGQK 9 2 Phospho (STY) _CLT(ph)GFT(ph)GQK_ CLT(1)GFT(1)GQK CLT(40.59)GFT(40.59)GQK 0 0 2 0 Q7Z3S9;Q04721 Q7Z3S9 Q7Z3S9 NOTCH2NL;NOTCH2 Notch homolog 2 N-terminal-like protein;Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.378295898438 2 586.216365 1170.41818 33897.3586628418 2.5644 0.0015033 390910 229.16 390920 229.16 815.377485802358 49.262 1.0694 49.262 48.913 49.982 0 148 36 6 0.983941245790749 0.000585715901699294 0.0270862802364269 0.041855 1 11573 40.589 20.976 1 120510000 13657 17739 15204 14852 19366 15187 21226 19222 15271 10093 12929 16741 15275 15432 19428 15277 21354 19429 15321 9948.8 1 1 1 1 1 1 1 1 1 1 694 863 612 651 770 770 4513;4514 CLVAGLLSPR 10 Phospho (STY) _CLVAGLLS(ph)PR_ CLVAGLLS(1)PR CLVAGLLS(63.42)PR 0 0 1 0 Q8WYP5 Q8WYP5 Q8WYP5 AHCTF1 Protein ELYS MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.8759765625 2 583.293591 1164.57263 37508.3521437334 1.7489 0.0010201 196440 114.58 196440 114.58 697.874650381409 88.955 0.7536 88.955 88.596 89.349 -1.4211E-14 58 25 3 0.655304442635033 0.00152156998478258 0.0608519359227468 0.020787 1 20774 63.415 46.39 1 8977000 8398.5 9217.5 8409 10102 8362.8 7762.9 7920.9 10567 11467 10481 7947.2 8712.4 8465.4 10281 8486.4 7940.4 8181.1 10807 11164 10113 1 1 1 1 1 1 1 1 1 1 695 1585 613 652 771 771 2910 CNTPTYCDLGK 11 Acetyl (Protein N-term),Phospho (STY) _(ac)CNT(ph)PTYCDLGK_ CNT(0.99)PT(0.01)YCDLGK CNT(19.91)PT(-19.91)Y(-55.26)CDLGK 1 0 1 0 Q9Y277 Q9Y277 Q9Y277 VDAC3 Voltage-dependent anion-selective channel protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.353698730469 2 725.77256 1449.53057 35108.3272190682 1.4212 0.0010314 157870 114.58 157880 114.58 840.352901540369 62.399 1.6842 62.399 61.949 63.633 0 109 57 5 0.825427625650235 0.00150518037393241 0.0526213593691927 0.00010989 1 14663 93.345 47.888 3 18274000 17799 15304 17922 15627 13411 17616 15105 16777 13258 15971 16843 14459 17987 16057 13899 17588 15243 17343 13160 15427 1 1 1 1 1 1 1 1 1 1 696 2238 614 653 772 772 4841 CPSDEDFR 8 Phospho (STY) _CPS(ph)DEDFR_ CPS(1)DEDFR CPS(82.42)DEDFR 0 0 1 0 Q8IXT5 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.768981933594 2 553.186446 1104.35834 39800.7097212997 2.0749 0.0011478 207130 114.58 207130 114.58 667.76810345799 41.889 0.85508 41.889 41.683 42.538 -7.1054E-15 45 29 2 0.747022503443848 0.000650054559515012 0.0192271231060004 0.011993 1 9578 82.417 74.705 1 7530500 18744 21719 19504 20752 21112 19563 20001 21384 21687 7793.9 17740 20512 19613 21347 21315 19699 20459 21614 21327 7833.8 1 1 1 1 1 1 1 1 1 1 697 1429 615 654 773 773 2602 CPSPINEHNGLIK 13 Phospho (STY) _CPS(ph)PINEHNGLIK_ CPS(1)PINEHNGLIK CPS(164.57)PINEHNGLIK 0 0 1 0 Q9Y2H6 Q9Y2H6 Q9Y2H6 FNDC3A Fibronectin type-III domain-containing protein 3A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.01708984375 3 520.240969 1557.70108 39007.6896183892 1.9887 0.0010346 293660 152.77 293660 152.78 673.015737107187 59.202 0.43871 59.202 58.988 59.427 0 40 14 4 0.747293762831215 0.00195270167500883 0.0751321987651104 2.0019E-07 1 13892 164.57 131.27 1 14256000 16259 13298 15934 13756 14871 17548 14282 14346 15908 4937.6 15384 12565 16049 14157 15147 17389 14610 14663 15627 4981.4 1 1 1 1 1 1 1 1 1 1 698 2246 616 655 774 774 4147 CPSQSSSRPAAMISQPPTPPTGQPVREDAK 30 Phospho (STY) _CPS(ph)QSSSRPAAMISQPPTPPTGQPVREDAK_ CPS(0.996)QS(0.003)S(0.001)S(0.001)RPAAMISQPPTPPTGQPVREDAK CPS(25.39)QS(-25.39)S(-31.05)S(-31.05)RPAAMIS(-73.24)QPPT(-100.8)PPT(-118.18)GQPVREDAK 0 0 1 2 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 930.216369628906 4 815.132429 3256.50061 32195.9261263407 1.9293 0.0015726 140570 114.58 140570 114.58 930.215299591631 56.63 0.50371 56.63 56.279 56.783 0 60 16 5 0.953294063402635 0.00157974703029559 0.0161594187498456 1.4805E-05 1 13249 132.99 119.44 7 25863000 8548 6720.9 8394.4 7271.4 7603 10975 7983.4 8186 7118.3 6183.8 8088 6352.1 8452.5 7491.9 7766.8 10812 8084.4 8505.5 7060.4 6012.2 1 1 1 1 1 1 1 1 1 1 699 1273 617 656 775 775 2255 CRSPGMLEPLGSSR 14 Oxidation (M),Phospho (STY) _CRS(ph)PGM(ox)LEPLGSSR_ CRSPGM(1)LEPLGSSR CRS(1)PGMLEPLGSSR CRSPGM(87.36)LEPLGSSR CRS(71.88)PGMLEPLGS(-71.88)S(-76.69)R 0 1 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.628662109375 3 548.240752 1641.70043 39661.5682949308 1.2543 0.00068767 139330 76.386 139330 76.387 624.627686737041 45.658 0.82047 45.658 45.407 46.228 0 74 27 4 0.985863250472229 0.00176257146050126 0.00810593795373232 0.0091388 1 10510 87.356 62.974 3 31349000 10518 11422 10640 12280 7174.7 12516 6765.3 10628 12492 2731.2 9952.9 10795 10664 12560 7485.2 12516 7063 10816 12083 2817.7 1 1 1 1 1 1 1 1 1 1 700 2226 618 657 776 776 237 4036 CRSPGMLEPLGSSR 14 Phospho (STY) _CRS(ph)PGMLEPLGSSR_ CRS(1)PGMLEPLGSSR CRS(90.09)PGMLEPLGS(-90.09)S(-97.27)R 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.631774902344 3 542.909114 1625.70551 39606.048028725 1.3797 0.00074903 140700 76.387 140700 76.388 619.297074646244 56.543 0.79889 56.543 56.186 56.985 0 116 26 6 0.991132496092992 0.00999790916142573 0.102714825337421 5.3327E-07 1 13172 153.25 144.3 3 205460000 15980 16683 18608 17333 6995.2 18738 7964.4 14294 17242 3367.4 15131 15763 18446 17779 7806.9 18670 8314.6 14612 16619 3501.6 1 1 1 1 1 1 1 1 1 1 701 2226 618 658 777 777 4036 CSATPSAQVKPIVSASPPSR 20 Phospho (STY) _CSATPSAQVKPIVSAS(ph)PPSR_ CSATPSAQVKPIVS(0.004)AS(0.988)PPS(0.008)R CS(-123.06)AT(-109.11)PS(-98.44)AQVKPIVS(-24.09)AS(21.01)PPS(-21.01)R 0 0 1 1 Q96EV2 Q96EV2 Q96EV2 RBM33 RNA-binding protein 33 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.456665039063 3 707.345044 2119.0133 33393.8325968331 1.8901 0.0013369 215990 152.78 215990 152.78 860.454900606178 56.779 0.67648 56.779 56.337 57.014 0 57 22 4 0.977005533562756 0.0019787564620202 0.029920679437702 1.3989E-07 1 13265 143.54 124.61 6 15975000 13872 12356 13892 12670 12311 15885 11730 14987 13690 8682.3 13127 11674 13967 13042 12580 15784 12022 15329 13425 8522.3 1 1 1 1 1 1 1 1 1 1 702 1674 619 659 778 778 3080 CSGPGLSPGMVR 12 Oxidation (M),Phospho (STY) _CSGPGLS(ph)PGM(ox)VR_ CSGPGLSPGM(1)VR CSGPGLS(1)PGMVR CSGPGLSPGM(82.48)VR CS(-34.67)GPGLS(34.67)PGMVR 0 1 1 0 P21333 P21333 P21333 FLNA Filamin-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.854187011719 2 657.27253 1312.53051 36033.8082312456 1.9048 0.001252 174330 114.58 174330 114.58 771.854211043365 46.77 0.51416 46.77 46.491 47.005 0 41 17 3 0.845432082072325 0.00139065120779575 0.0528570414502925 0.009192 1 10786 82.481 58.137 2 17797000 20926 23678 20842 23850 31689 21587 32155 31693 28070 236200 19801 22369 21125 24441 31521 22310 32597 38516 27870 223150 1 1 1 1 1 1 1 1 1 1 703 451 620 660 779 779 61 735 CSGPGLSPGMVR 12 Oxidation (M),Phospho (STY) _CSGPGLS(ph)PGM(ox)VR_ CSGPGLSPGM(1)VR CS(0.001)GPGLS(0.999)PGMVR CSGPGLSPGM(47.99)VR CS(-28.31)GPGLS(28.31)PGMVR 0 1 1 0 P21333 P21333 P21333 FLNA Filamin-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.858032226563 2 657.27253 1312.53051 35609.8841649317 0.90684 0.00059604 174330 114.58 174330 114.58 771.854711203127 47.526 0.47461 47.526 47.328 47.803 0 28 19 2 0.962827522558099 0.000912630534057314 0.0076724900784074 0.050715 1 11010 47.987 32.721 2 29224000 34474 36339 33498 35689 50123 33502 47698 51113 38736 449720 32617 34325 33986 36648 49841 34746 48423 64139 38601 424650 1 1 1 1 1 1 1 1 1 1 704 451 620 660 780 780 61 735 CSGPGLSPGMVR 12 Phospho (STY) _CSGPGLS(ph)PGMVR_ CSGPGLS(1)PGMVR CS(-98.07)GPGLS(98.07)PGMVR 0 0 1 0 P21333 P21333 P21333 FLNA Filamin-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.857727050781 2 649.275073 1296.53559 35772.8736106166 1.9127 0.0012419 176470 114.58 176480 114.58 763.856440220896 58.419 0.64532 58.419 58.111 58.756 7.1054E-15 80 21 5 0.994876595612529 0.00436074621408555 0.104573577439344 4.1472E-16 1 13648 232.28 204.41 2 230570000 26347 47088 30730 41818 57109 28914 61184 46164 45229 12278 24948 44452 31022 43052 56440 29797 61647 46007 45304 12630 1 1 1 1 1 1 1 1 1 1 705 451 620 661 781 781 735 CSSPTVGPPPLPQK 14 Phospho (STY) _CS(ph)SPTVGPPPLPQK_ CS(0.59)S(0.39)PT(0.02)VGPPPLPQK CS(1.81)S(-1.81)PT(-14.67)VGPPPLPQK 0 0 1 0 Q8ND30 Q8ND30 Q8ND30 PPFIBP2 Liprin-beta-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.355102539063 3 515.57747 1543.71058 39486.044566476 1.7222 0.0008879 296320 152.78 296320 152.78 668.355263827735 66.002 0.45302 66.002 65.807 66.26 0 33 14 3 0.97309101088718 0.00154479550410103 0.0181938771761406 5.7849E-05 1 15507 127.3 113.14 3 8186200 11051 7071 11455 7638.5 7097.6 11033 7067.5 9871.7 7106.4 5587.5 10459 6682.9 11458 7862.8 7459.6 10903 7196.7 10115 7010.2 5489.8 1 1 1 1 1 1 1 1 1 1 706 1501 621 662 782 782 2755 CSSPVDTECSHAEGSR 16 Phospho (STY) _CSS(ph)PVDTECSHAEGSR_ CS(0.031)S(0.969)PVDTECSHAEGSR CS(-15.02)S(15.02)PVDT(-60.97)ECS(-158.19)HAEGS(-245.58)R 0 0 1 0 O75170 O75170 O75170 PPP6R2 Serine/threonine-protein phosphatase 6 regulatory subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.619750976563 3 620.22924 1857.66589 38701.7640394997 1.4275 0.00088535 123160 76.387 123160 76.388 696.617051744357 27.405 0.36996 27.405 27.182 27.552 3.5527E-15 26 12 3 0.973193244403635 0.000782494084404497 0.00652128308399482 2.8864E-31 1 6092 290.92 278.37 5 10186000 4451.7 4577.3 4789.9 3929.9 4589.1 4387.1 5196.8 6218.6 4982.5 1747.7 4213.7 4320.4 4802.4 4082 4677.3 4403.3 5254.9 6219.4 4925.3 1789.6 1 1 1 1 1 1 1 1 1 1 707 173 622 663 783 783 300 CSTAGSSPNSVSELSLASLTEK 22 Phospho (STY) _CSTAGSS(ph)PNSVSELSLASLTEK_ CST(0.002)AGS(0.171)S(0.827)PNSVSELSLASLTEK CS(-33.66)T(-27.05)AGS(-6.85)S(6.85)PNS(-47.93)VS(-88.84)ELS(-138.34)LAS(-174.58)LT(-183.1)EK 0 0 1 0 Q5M775 Q5M775 Q5M775 SPECC1 Cytospin-B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 922.125183105469 3 769.013689 2304.01924 32686.8169508323 1.9733 0.0015175 198660 152.78 198670 152.78 922.122796608951 93.301 0.50425 93.301 93.03 93.534 -1.4211E-14 52 16 4 0.899497773297273 0.00510398632244447 0.14813348124499 2.7225E-12 1 21726 204.23 180.51 9 21662000 15200 5896 16980 6194.8 7010.7 17383 7483.8 12313 6630.7 83310 14390 5571.5 16875 6522.2 7709 17018 7571.8 15058 6578.7 78732 1 1 1 1 1 1 1 1 1 1 708 1173 623 664 784 784 2031 CSVSLSNVEAR 11 Phospho (STY) _CSVS(ph)LSNVEAR_ CS(0.032)VS(0.889)LS(0.079)NVEAR CS(-14.41)VS(10.54)LS(-10.54)NVEAR 0 0 1 0 P47712 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.864440917969 2 651.281409 1300.54827 35423.4777336767 1.3754 0.00089575 175930 114.58 175930 114.58 765.863518755912 55.5 0.52678 55.5 55.335 55.861 0 32 17 4 0.705095607673655 0.00122052017018648 0.0461280134103919 1.225E-06 1 12948 143.58 96.623 3 14619000 25269 17440 23177 18168 38636 25182 40245 29840 17137 15791 23903 16479 23651 18722 38296 25016 40256 30227 17889 15560 1 1 1 1 1 1 1 1 1 1 709 618 624 665 785 785 1021 CTGDFSPSPEK 11 Phospho (STY) _CTGDFSPS(ph)PEK_ CTGDFS(0.007)PS(0.993)PEK CT(-60.09)GDFS(-21.55)PS(21.55)PEK 0 0 1 0 Q5VWN6 Q5VWN6 Q5VWN6 FAM208B Protein FAM208B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.91064453125 2 652.746868 1303.47918 32659.9357416678 1.9174 0.0012516 351070 229.16 351080 229.16 881.908911409064 52.7 0.40685 52.7 52.435 52.842 0 31 13 3 0.937870048618149 0.000262543715069221 0.00597190065536779 0.00016084 1 12286 118.37 81.385 3 8381200 8378.6 11480 8809.3 11297 10422 9940.2 10738 10956 12261 7727.9 7929.9 10844 8866.1 11589 10487 10051 10957 11183 12033 7530.4 1 1 1 1 1 1 1 1 1 1 710 1211 625 666 786 786 2126 CVACQNPDKPSPSTSVPAPASFK 23 Phospho (STY) _CVACQNPDKPSPS(ph)TSVPAPASFK_ CVACQNPDKPS(0.075)PS(0.691)T(0.1)S(0.135)VPAPASFK CVACQNPDKPS(-9.66)PS(7.1)T(-8.39)S(-7.1)VPAPAS(-60.44)FK 0 0 1 1 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 804.159851074219 4 632.035466 2524.11276 34979.1293566214 2.0494 0.0012953 271940 171.87 271940 171.87 804.410702141966 67.657 0.61792 67.657 67.269 67.887 0 57 20 5 0.944698294515728 0.00217764274484993 0.0662378019651363 3.3704E-05 2 15879 125.11 97.21 5 12778000 15855 26351 14230 25218 19120 15865 17443 20334 26811 42149 14996 24886 14479 25812 19099 16455 18092 21494 26057 40159 2 2 2 2 2 2 2 2 2 2 711 655 626 667 787;788 787 1093 CVGAELEYDSEHSDWHGFD 19 Phospho (STY) _CVGAELEYDS(ph)EHSDWHGFD_ CVGAELEYDS(1)EHSDWHGFD CVGAELEY(-173.73)DS(70.79)EHS(-70.79)DWHGFD 0 0 1 0 Q9GZN8 Q9GZN8 Q9GZN8 C20orf27 UPF0687 protein C20orf27 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.008850097656 3 778.287812 2331.84161 34218.5090704187 1.7539 0.001365 98147 76.386 98148 76.388 855.008543262858 79.018 1.4103 79.018 78.693 80.104 0 152 48 4 0.986280141357731 0.00317814857372023 0.0440133824187072 5.4437E-23 2 18490 268.65 256.87 3 34624000 9042.8 9418.6 9410.6 8524.1 8427.5 9764.5 8473.4 10439 10366 73633 8558.2 8892.3 9442.8 8826.8 8612.7 9879.2 8674.8 12663 10148 69576 2 2 2 2 2 2 2 2 2 2 712 1889 627 668 789;790 789 3442 CVPAPGAGASGGTSPSATQPNPAVFIFEHK 30 Phospho (STY) _CVPAPGAGASGGTS(ph)PSATQPNPAVFIFEHK_ CVPAPGAGASGGT(0.117)S(0.883)PSATQPNPAVFIFEHK CVPAPGAGAS(-43.58)GGT(-8.77)S(8.77)PS(-34.44)AT(-49.36)QPNPAVFIFEHK 0 0 1 0 O60343 O60343 O60343 TBC1D4 TBC1 domain family member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.687133789063 4 758.854757 3031.38992 33232.6331297778 1.7836 0.0013535 150990 114.58 150990 114.58 873.686617184977 98.69 0.75047 98.69 98.316 99.066 0 94 25 6 0.960011771550611 0.00331884250801109 0.039443905935106 7.2283E-12 2 22880 183.31 164.81 5 34147000 5922.2 7622.4 7839.2 8149.6 15507 7456.7 14325 11623 8632.9 32825 5611.1 7203.6 7875 8324.5 15262 7619.2 14482 12486 8759.5 31178 2 2 2 2 2 2 2 2 2 2 713 145 628 669 791;792 792 247 CVSVQTDPTDEIPTKK 16 Phospho (STY) _CVS(ph)VQTDPTDEIPTKK_ CVS(0.996)VQT(0.004)DPTDEIPTKK CVS(23.95)VQT(-23.95)DPT(-47.78)DEIPT(-69.78)KK 0 0 1 1 P18583 P18583 P18583 SON Protein SON MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.460021972656 3 633.291946 1896.85401 32567.0811851765 2.3867 0.0015115 361860 229.16 361860 229.17 862.45608942214 63.746 0.26078 63.746 63.606 63.867 0 29 8 4 0.872050677997781 0.000834510712677463 0.0141942228395717 0.00027749 1 14981 101.05 79.854 4 16159000 16773 10144 16129 10832 12520 15920 10863 12603 10897 15525 15869 9586.2 16231 11161 12895 15718 11139 13238 10750 14911 1 1 1 1 1 1 1 1 1 1 714 428 629 670 793 793 687 DAASLESQLQDTQELLQEETR 21 Unmodified _DAASLESQLQDTQELLQEETR_ 0 0 0 0 P35580 P35580 P35580 MYH10 Myosin-10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 878.779113769531 3 802.05399 2403.14014 33290.3075924793 1.4757 0.0011836 95241 76.388 95242 76.39 878.776806294067 99.368 0.14507 99.368 99.292 99.438 0 7 4 2 0.594341029649173 0.00197906159173749 0.114457068124481 7.3132E-12 1 23094 205.02 167.93 1 24781000 6511.3 8009.2 6816.7 7354.7 8815 5536.3 9601.7 7424.2 7826.8 42770 6162.5 7562.3 6872.4 7562.3 8837 5734.7 9687.3 8662.6 7797.9 40445 1 1 1 1 1 1 1 1 1 1 715 548 630 671 794 794 DADDAVYELDGK 12 Unmodified _DADDAVYELDGK_ 0 0 0 0 Q13243 Q13243 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 885.444152832031 2 655.790972 1309.56739 32941.4092357545 2.5379 0.0016644 349450 229.16 349450 229.17 884.954848927292 63.368 0.38444 63.368 63.165 63.549 7.1054E-15 25 12 3 0.978184422516158 0.00126191661369548 0.018529508518647 0.00019388 2 14870 129.89 98.66 1 16159000 31812 37264 38686 37857 36687 37766 38096 42712 41657 35127 30128 35205 38538 38833 37371 37987 38808 43710 40952 34065 2 2 2 2 2 2 2 2 2 2 716 939 631 672 795;796 795 DADDAVYELDGK 12 Unmodified _DADDAVYELDGK_ 0 0 0 0 Q13243 Q13243 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 884.955261230469 2 655.790972 1309.56739 33913.8880357367 1.8507 0.0012137 349450 229.16 349450 229.16 884.954356245229 68.805 0.44751 68.805 68.555 69.003 0 28 14 3 0.962176967140611 0.000566026211684901 0.0144912280193601 1.939E-10 1 16151 196.44 158.76 1 14100000 20457 23254 21054 23227 22144 23958 23988 23437 25226 26209 19360 21967 21183 23862 22435 24025 24363 24319 24838 25222 1 1 1 1 1 1 1 1 1 1 717 939 631 672 797 797 DADDAVYELNGK 12 Unmodified _DADDAVYELNGK_ 0 0 0 0 Q08170;Q13247 Q08170;Q13247 Q13247 SRSF4;SRSF6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 884.465515136719 2 655.298964 1308.58338 33455.882891384 1.8511 0.001213 349710 229.16 349710 229.16 884.461551994134 64.382 0.2965 64.382 64.24 64.537 0 16 9 3 0.496244736768347 0.000440568333390539 0.0112313937439352 8.7275E-07 1 15125 160.91 125.18 1 6542100 15675 17063 15971 14266 12956 16331 15490 17804 17290 14953 14834 16103 16033 14852 13363 16324 15695 18252 16984 14492 1 1 1 1 1 1 1 1 1 1 718 940;886 632 673 798 798 DADSQNPDAPEGK 13 Unmodified _DADSQNPDAPEGK_ 0 0 0 0 P53621 P53621 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 601.305908203125 3 448.528511 1342.5637 41038.2417728422 1.2512 0.00056118 340620 152.78 340620 152.78 601.304171739415 33.169 0.48937 33.169 32.794 33.284 0 32 16 4 0.573487861908288 0.00111953795459806 0.0233241790809695 0.008555 1 7419 79.614 58.951 1 7449300 12389 10083 13539 11094 10786 12439 8718.9 10584 11370 1365.4 11728 9530.5 13529 11351 11082 12388 9046.9 10729 11106 1530.6 1 1 1 1 1 1 1 1 1 1 719 704 633 674 799 799 DAEDAMDAMDGAVLDGR 17 Oxidation (M) _DAEDAM(ox)DAMDGAVLDGR_ DAEDAM(1)DAMDGAVLDGR DAEDAM(62.35)DAM(-62.35)DGAVLDGR 0 1 0 0 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.30029296875 3 589.910186 1766.70873 39052.4124526352 1.0512 0.00062009 129490 76.388 129490 76.388 666.297965522968 65.92 0.44809 65.92 65.631 66.079 0 40 14 4 0.846649175435582 0.000739694120839891 0.0130177178460807 3.2267E-07 1 15499 145.46 125.7 2 9602400 5406.3 6110.6 5711.1 5857.3 4946.8 4860.2 5812.8 5516.9 5657.9 6411.6 5116.9 5771 5725.5 6013.5 5077.3 4936.4 5871.1 5701.6 5589.3 6165 1 1 1 1 1 1 1 1 1 1 720 832 634 675 800 800 113 DAEDAMDAMDGAVLDGR 17 Unmodified _DAEDAMDAMDGAVLDGR_ 0 0 0 0 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.96826171875 3 584.578548 1750.71381 37644.9877033347 1.8102 0.0010582 130670 76.387 130670 76.388 661.30037788153 83.448 0.66887 83.448 83.115 83.784 0 84 22 5 0.887587404677537 0.00460888970848784 0.0470287828488332 8.6485E-16 1 19478 218.12 198.88 1 70254000 4004.6 3648 4041 4042.6 4609.1 3691.6 4823.8 5135 4738.9 6041.1 3789.5 3448.4 4074.3 4121.1 4646.8 3745.4 4897.6 5276.9 4679.5 5807.2 1 1 1 1 1 1 1 1 1 1 721 832 634 676 801 801 DAGDPSPPNK 10 Phospho (STY) _DAGDPS(ph)PPNK_ DAGDPS(1)PPNK DAGDPS(79.49)PPNK 0 0 1 0 Q9BTA9 Q9BTA9 Q9BTA9 WAC WW domain-containing adapter protein with coiled-coil MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.377807617188 2 539.216061 1076.41757 NaN NaN NaN NaN NaN NaN NaN NaN 37.639 1 37.639 37.139 38.139 0 NaN NaN NaN 0.025269 1 8512 79.492 60.71 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 722 1821 635 677 802 802 3334 DAGVGGLTQAGFLSGELALNSPGPLSPSGMK 31 Oxidation (M),Phospho (STY) _DAGVGGLTQAGFLSGELALNSPGPLS(ph)PSGM(ox)K_ DAGVGGLTQAGFLSGELALNSPGPLSPSGM(1)K DAGVGGLTQAGFLSGELALNSPGPLS(0.8)PS(0.2)GMK DAGVGGLTQAGFLSGELALNSPGPLSPSGM(142.16)K DAGVGGLT(-124.72)QAGFLS(-87.48)GELALNS(-46.38)PGPLS(6.01)PS(-6.01)GMK 0 1 1 0 P15923 P15923 P15923 TCF3 Transcription factor E2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.947692871094 4 756.865056 3023.43112 33304.4798555594 1.6552 0.0012527 151390 114.58 151390 114.58 871.947399258058 100.57 0.16836 100.57 100.48 100.65 1.4211E-14 13 5 4 0.91114408762669 0.00313980648866335 0.0362002847361886 1.4469E-07 1 23533 142.16 122.78 5 27205000 5466.9 5965.4 4437.4 6406.5 6639.6 5944.9 6173.7 6622.3 6621.9 28076 5169.2 5637.8 4553.4 6543.7 6601.6 6040.9 6319 7462.3 6514.8 26590 1 1 1 1 1 1 1 1 1 1 723 398 636 678 803 803 52 633 DALGDSLQVPVSPSSTTSSR 20 Phospho (STY) _DALGDSLQVPVS(ph)PSSTTSSR_ DALGDSLQVPVS(0.983)PS(0.013)S(0.003)T(0.001)T(0.001)SSR DALGDS(-73.67)LQVPVS(18.82)PS(-18.82)S(-25.64)T(-30.14)T(-32.31)S(-36.74)S(-41.14)R 0 0 1 0 Q9Y2D5 Q9Y2D5 Q9Y2D5 AKAP2 A-kinase anchor protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.712524414063 3 695.322963 2082.94706 35427.1046874305 1.7541 0.0012197 109860 76.388 109860 76.389 772.04513748627 71.511 0.69257 71.511 71.174 71.867 0 105 23 6 0.942114750877052 0.00653972538211794 0.287087886904598 1.4572E-07 1 16748 142.56 117.78 8 97849000 11701 6142 11023 5730.6 6576.9 11895 8123 9288.3 5799.4 14363 11070 5799.8 11087 6008.2 6956.4 11642 8130.7 9850.6 5820.8 13740 1 1 1 1 1 1 1 1 1 1 724 2242 637 679 804 804 4137 DAPISPASIASSSSTPSSK 19 Phospho (STY) _DAPIS(ph)PASIASSSSTPSSK_ DAPIS(1)PASIASSSSTPSSK DAPIS(35.92)PAS(-35.92)IAS(-81.14)S(-87.53)S(-86.85)S(-93.32)T(-99.32)PS(-104.39)S(-109.13)K 0 0 1 0 Q04727 Q04727 Q04727 TLE4 Transducin-like enhancer protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.066101074219 3 623.954099 1868.84047 35355.6330789178 1.9562 0.0012205 244850 152.77 244850 152.78 776.728233802831 67.152 0.95501 67.152 66.72 67.675 0 78 32 3 0.670197157168358 0.00596290554650518 0.0962284148293588 3.9326E-05 1 15762 117.62 95.789 9 29804000 22929 13719 25090 13411 9278.2 27205 11661 19935 16424 15596 21705 12958 24950 14010 10387 26592 11886 20748 16004 15147 1 1 1 1 1 1 1 1 1 1 725 865 638 680 805 805 1406 DAPTSPASVASSSSTPSSK 19 Phospho (STY) _DAPTS(ph)PASVASSSSTPSSK_ DAPT(0.145)S(0.855)PASVASSSSTPSSK DAPT(-7.71)S(7.71)PAS(-47.39)VAS(-112.55)S(-119.72)S(-119.72)S(-119.72)T(-123.93)PS(-138.15)S(-140.41)K 0 0 1 0 Q04726 Q04726 Q04726 TLE3 Transducin-like enhancer protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.045166015625 3 615.270087 1842.78843 34740.1015651251 0.79704 0.00049039 248300 152.77 248310 152.77 768.378434812657 47.431 0.73609 47.431 47.036 47.772 0 88 29 4 0.977496594053518 0.00249194118649643 0.00623767056981452 8.4616E-08 1 10948 160.81 130.09 10 167770000 21357 30950 21906 28987 42322 22387 47248 36480 36882 26886 20211 29227 22286 29777 41803 22961 47574 36856 36832 26160 1 1 1 1 1 1 1 1 1 1 726 864 639 681 806 806 1401 DAPVHGSPTGPGAWTASK 18 Phospho (STY) _DAPVHGS(ph)PTGPGAWTASK_ DAPVHGS(0.997)PT(0.003)GPGAWTASK DAPVHGS(25.17)PT(-25.17)GPGAWT(-132.63)AS(-149.3)K 0 0 1 0 Q9BRP1 Q9BRP1 Q9BRP1 PDCD2L Programmed cell death protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.717346191406 3 605.940236 1814.79888 36987.1412890073 1.421 0.00086101 252130 152.78 252130 152.78 759.049925500985 58.026 0.35649 58.026 57.875 58.231 0 23 11 3 0.966075600560927 0.00108213711202915 0.0126392966523144 5.7741E-11 1 13606 189.09 167.53 4 13252000 10741 15808 11916 14928 11023 11574 9581.4 11581 17369 12041 10168 14928 11918 15328 11226 11774 10035 11979 16807 11606 1 1 1 1 1 1 1 1 1 1 727 1812 640 682 807 807 3327 DAQRLSPIPEEVPK 14 Phospho (STY) _DAQRLS(ph)PIPEEVPK_ DAQRLS(1)PIPEEVPK DAQRLS(152.86)PIPEEVPK 0 0 1 1 Q96T23 Q96T23 Q96T23 RSF1 Remodeling and spacing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.720642089844 3 553.609827 1657.80765 36788.3579087678 2.0152 0.0011156 275960 152.78 275960 152.78 706.719501078485 64.076 0.69696 64.076 63.811 64.508 0 72 23 4 0.994787873072178 0.0191516714438285 0.301037162299171 5.425E-07 1 15048 152.86 115.3 1 127230000 40609 58813 49266 65541 72286 43399 74640 59285 68844 7154 38459 55597 49396 66529 72025 44702 75706 59067 68175 8108.4 1 1 1 1 1 1 1 1 1 1 728 1754 641 683 808 808 3215 DASALLDPMECTDTAEEQR 19 Unmodified _DASALLDPMECTDTAEEQR_ 0 0 0 0 Q9BTE3 Q9BTE3 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.701843261719 3 717.977147 2150.90961 35976.6931075269 1.9846 0.0014249 106390 76.388 106400 76.389 794.699886246189 77.343 0.46197 77.343 77.113 77.575 0 36 15 4 0.885646895001819 0.00134537160660593 0.0140486775354448 8.0197E-08 1 18138 163.18 144.73 1 6267400 8480.7 5201.5 11064 6391.3 8247.4 9566.5 7380.2 9768.9 5167.5 14303 8034.6 4920.5 10956 6540.8 8521.4 9476.8 7493.5 10222 5192.6 13694 1 1 1 1 1 1 1 1 1 1 729 1823 642 684 809 809 DASDDLDDLNFFNQK 15 Unmodified _DASDDLDDLNFFNQK_ 0 0 0 0 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.370544433594 3 586.260201 1755.75877 36522.896381171 2.1714 0.001273 260590 152.78 260600 152.78 739.369814766293 95.631 0.72541 95.631 95.361 96.087 0 91 24 5 0.994223989025841 0.00570604540479238 0.101940477548898 9.0809E-16 1 22233 222.1 190.46 1 36787000 6746.6 11233 8389.9 12520 8980.4 6910.1 9746.8 11111 13812 8297.3 6390.2 10619 8362.4 12686 9093.2 7245 9996 11232 13456 8070.1 1 1 1 1 1 1 1 1 1 1 730 443 643 685 810 810 DASPINRWSPTR 12 2 Phospho (STY) _DAS(ph)PINRWSPT(ph)R_ DAS(0.999)PINRWS(0.114)PT(0.887)R DAS(30.1)PINRWS(-8.94)PT(8.94)R 0 0 2 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.908813476563 2 780.323812 1558.63307 32966.562562057 1.1893 0.00092804 146840 114.58 146840 114.58 894.904132062117 54.438 1.2154 54.438 53.801 55.016 0 128 41 4 0.965726138450068 0.000626343196824006 0.0145491496478071 0.0021888 1 12790 97.183 71.841 3 43813000 16349 19463 17930 20772 15495 17274 15778 17508 20746 11401 15477 18393 17934 21192 15877 17495 16183 17896 20259 11141 1 1 1 1 1 1 1 1 1 1 731 963 644 686 811 811 1620;1621;4542 DASPSKEER 9 Phospho (STY) _DAS(ph)PSKEER_ DAS(0.999)PS(0.001)KEER DAS(32.2)PS(-32.2)KEER 0 0 1 1 Q9BUQ8 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 519.596313476563 3 366.820287 1097.43903 43260.7740727954 0.63981 0.0002347 416490 152.78 416490 152.78 519.595938068184 26.494 0.93665 26.494 26.245 27.182 0 88 31 4 0.91089382009875 0.0509127699120802 1 4.0246E-06 1 5892 147.55 113.67 2 212250000 54586 60611 55768 65359 66805 53326 64406 63400 67829 5028.7 51657 57284 56218 66625 67112 54124 65768 63356 66782 6202.4 1 1 1 1 1 1 1 1 1 1 732 1835 645 687 812 812 3358 DASTSPPNRETIGSAQCK 18 Phospho (STY) _DASTS(ph)PPNRETIGSAQCK_ DAS(0.112)T(0.112)S(0.77)PPNRET(0.004)IGS(0.002)AQCK DAS(-8.37)T(-8.37)S(8.37)PPNRET(-23.29)IGS(-26.17)AQCK 0 0 1 1 Q15154 Q15154 Q15154 PCM1 Pericentriolar material 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.735229492188 3 666.957738 1997.85138 35771.7450549867 1.7728 0.0011824 229060 152.77 229060 152.78 820.06667556204 40.89 0.59707 40.89 40.685 41.282 0 44 20 3 0.691759128931134 0.00117762653848729 0.0255583565295856 0.046927 1 9354 42.209 29.36 5 14156000 13828 16619 15928 17540 13744 14184 12548 15302 17429 4488.5 13093 15705 15889 17899 14064 14389 12964 15441 16990 4580.6 1 1 1 1 1 1 1 1 1 1 733 1062 646 688 813 813 1833 DASVPLIDVTNLPTPR 16 Phospho (STY) _DAS(ph)VPLIDVTNLPTPR_ DAS(1)VPLIDVTNLPTPR DAS(143.07)VPLIDVT(-143.07)NLPT(-184.95)PR 0 0 1 0 Q96A65 Q96A65 Q96A65 EXOC4 Exocyst complex component 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.023315429688 3 596.636153 1786.88663 38251.0871197184 1.794 0.0010704 128030 76.388 128030 76.389 673.358478893594 96.389 0.66755 96.389 96.056 96.724 -1.4211E-14 71 22 4 0.991941528286684 0.00231204847743494 0.037338125193408 3.6681E-11 1 22375 204.63 190.97 3 14684000 2348.5 2629.1 2568.4 2431.4 2074.8 2332.9 2197.9 2818.9 2574.8 11814 2223.1 2482.5 2567.8 2507 2136.8 2371.1 2241.7 3164.7 2524.6 11189 1 1 1 1 1 1 1 1 1 1 734 1644 647 689 814 814 3038 DATNVGDEGGFAPNILENK 19 Unmodified _DATNVGDEGGFAPNILENK_ 0 0 0 0 P06733 P06733 P06733 ENO1 Alpha-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.091491699219 3 654.313076 1959.9174 34781.400289503 2.3937 0.0015662 233490 152.78 233490 152.78 807.422375567608 81.674 0.77537 81.674 81.223 81.998 0 106 26 6 0.951480943706123 0.00499276832501768 0.0504720638570003 2.4294E-16 1 19079 237.39 204.19 1 153490000 12767 14619 13331 14701 14845 11788 15747 14822 14874 13824 12083 13810 13412 15043 14987 12010 15962 15166 14713 13360 1 1 1 1 1 1 1 1 1 1 735 314 648 690 815 815 DAVQSLQLSPR 11 Phospho (STY) _DAVQSLQLS(ph)PR_ DAVQS(0.014)LQLS(0.986)PR DAVQS(-18.57)LQLS(18.57)PR 0 0 1 0 Q86YV0 Q86YV0 Q86YV0 RASAL3 RAS protein activator like-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.900512695313 2 647.313567 1292.61258 34903.1473950097 1.5022 0.00097236 177010 114.58 177010 114.58 761.89706160277 62.659 1.8061 62.659 61.331 63.138 0 126 61 4 0.446307071841486 0.00137925836872623 0.0232930105509695 0.046627 1 14779 52.24 24.072 2 72097000 9786.5 7812.3 10327 7254.2 10051 9157.9 9374.2 7988.3 7793.6 8502.4 9262.5 7376.9 10363 7513.1 10205 9095.8 9531.4 8314.4 7757 8190.9 1 1 1 1 1 1 1 1 1 1 736 1404 649 691 816 816 2550 DCIHEHLSGDEFEK 14 Phospho (STY) _DCIHEHLS(ph)GDEFEK_ DCIHEHLS(1)GDEFEK DCIHEHLS(160.55)GDEFEK 0 0 1 0 A0AVK6 A0AVK6 A0AVK6 E2F8 Transcription factor E2F8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.014892578125 3 599.237953 1794.69203 35677.8611995136 1.7166 0.0010286 254950 152.78 254950 152.78 752.013401150574 57.076 0.693 57.076 56.841 57.534 0 42 23 3 0.979802936063045 0.00157207171304638 0.011953698414094 3.6645E-07 1 13343 160.55 126.92 1 17479000 12037 9222.1 11890 12154 8414.6 12172 7555.8 11848 10072 69349 11389 8728.5 11937 12301 8734.6 12326 7801.3 13987 9831 65575 1 1 1 1 1 1 1 1 1 1 737 0 650 692 817 817 0 DCVGPEVEK 9 Unmodified _DCVGPEVEK_ 0 0 0 0 P00558 P00558 P00558 PGK1 Phosphoglycerate kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.901062011719 2 516.736957 1031.45936 36218.3350572747 1.9205 0.00099241 443480 229.16 443480 229.16 745.899264957876 47.885 0.29157 47.885 47.685 47.976 0 22 9 3 0.946886403228475 0.000826508212988121 0.0166200636166681 0.0029549 1 11110 111.61 76.312 1 11218000 27718 20111 25789 20249 32108 26018 32039 26009 21880 9992.9 26221 18999 26157 20875 32200 25841 32338 26390 22020 10011 1 1 1 1 1 1 1 1 1 1 738 282 651 693 818 818 DDANNDPQWSEEQLIAAK 18 Unmodified _DDANNDPQWSEEQLIAAK_ 0 0 0 0 P22234 P22234 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.090515136719 3 681.979986 2042.91813 33055.7255581963 1.6037 0.0010937 224020 152.77 224020 152.78 835.089009670912 76.161 0.52454 76.161 75.92 76.444 1.4211E-14 53 17 4 0.950457170417477 0.00494273924129622 0.0802986546853814 8.1924E-11 1 17876 182.7 170.72 1 18498000 9080.6 11082 9370.1 11372 7974.3 9877 9622.4 11291 12845 16621 8593.7 10471 9404.5 11635 8201.1 10016 9803.9 11772 12538 15912 1 1 1 1 1 1 1 1 1 1 739 456 652 694 819 819 DDDIAALVVDNGSGMCK 17 Acetyl (Protein N-term),Oxidation (M) _(ac)DDDIAALVVDNGSGM(ox)CK_ DDDIAALVVDNGSGM(1)CK DDDIAALVVDNGSGM(87.65)CK 1 1 0 0 P60709 P60709 P60709 ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.989868164063 3 613.269603 1836.78698 37216.0377457711 1.3986 0.00085773 124560 76.387 124560 76.387 689.657596623256 89.251 1.4486 89.251 88.507 89.956 1.4211E-14 198 49 6 0.995086526422942 0.0246380499011847 0.513455119900963 4.914E-08 1 20779 87.647 68.094 1 210690000 13163 9170.3 11301 9361.8 14770 10902 12515 10241 7459 12274 12448 8663.9 11525 9625.5 14747 10874 12709 10668 7574.2 11795 1 1 1 1 1 1 1 1 1 1 740 742 653 695 820 820 97 DDDIAALVVDNGSGMCK 17 Acetyl (Protein N-term) _(ac)DDDIAALVVDNGSGMCK_ 1 0 0 0 P60709 P60709 P60709 ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1025.98522949219 2 911.403308 1820.79206 30438.0897722558 1.6813 0.0015324 125720 114.58 125720 114.58 1025.98495796392 97.746 2.4286 97.746 96.638 99.066 0 200 83 7 0.28286944764724 0.00199586058771836 0.064269004128365 2.4174E-07 1 22632 87.216 72.205 1 614740000 3479.6 3558.6 3577.3 3694.7 4843.2 3010.6 3969.1 4639.6 4007.5 96097 3292.9 3362.5 3610.4 3774.3 4827.8 3249.6 4083.2 7486.3 3952.6 90594 1 1 1 1 1 1 1 1 1 1 741 742 653 696 821 821 DDDIAALVVDNGSGMCK 17 Acetyl (Protein N-term) _(ac)DDDIAALVVDNGSGMCK_ 1 0 0 0 P60709 P60709 P60709 ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.326904296875 3 607.937964 1820.79206 37331.8693674723 1.5398 0.0009361 125650 76.387 125650 76.388 684.325929107455 97.776 1.1294 97.776 97.272 98.401 0 155 38 7 0.918423523890869 0.00393941165373137 0.0865045764027832 1.0823E-22 1 22651 136.17 122.08 1 273280000 5406.6 3408.6 4610.6 3622.7 5555.8 5215.6 5762.1 4558.3 3772.6 6666.6 5113.1 3221.2 4700.4 3732.2 5583.3 5161.1 5800.9 4798.6 3806.8 6382.9 1 1 1 1 1 1 1 1 1 1 742 742 653 696 822 822 DDFTEFGK 8 Unmodified _DDFTEFGK_ 0 0 0 0 O75822 O75822 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 708.875671386719 2 479.711265 957.407977 37682.8391247114 2.2641 0.0010861 477710 229.16 477720 229.17 708.875383799929 70.954 0.71808 70.954 70.538 71.256 0 58 24 3 0.953477799905095 0.000887449913318903 0.0336419493965075 0.034836 1 16601 84.476 60.503 1 21332000 17631 21664 16957 21224 15662 17890 16825 19060 22626 11856 16681 20463 17099 21765 15992 18118 17230 19431 22079 11605 1 1 1 1 1 1 1 1 1 1 743 204 654 697 823 823 DDGSSMSFYVRPSPAK 16 Phospho (STY) _DDGSSMSFYVRPS(ph)PAK_ DDGS(0.056)S(0.053)MS(0.047)FY(0.016)VRPS(0.829)PAK DDGS(-11.73)S(-11.98)MS(-12.46)FY(-17.07)VRPS(11.73)PAK 0 0 1 1 Q9NYB0 Q9NYB0 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.703308105469 3 608.593848 1822.75972 36274.1553504725 1.9017 0.0011574 251030 152.77 251030 152.78 761.702534378358 66.7 0.46271 66.7 66.487 66.95 0 79 15 7 0.640844646200522 0.00247396084937429 0.0537046225621108 0.048425 1 15695 41.115 24.992 5 22037000 16549 25780 16897 25068 18549 18131 20288 24365 29356 15168 15661 24349 17018 25671 18759 18590 20816 24655 28581 14846 1 1 1 1 1 1 1 1 1 1 744 2070 655 698 824 824 3739 DDGSTLMEIDGDKGK 15 Unmodified _DDGSTLMEIDGDKGK_ 0 0 0 1 O96019 O96019 O96019 ACTL6A Actin-like protein 6A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 756.74072265625 3 527.575132 1579.70357 36914.697782572 1.0011 0.00052816 434370 229.16 434370 229.16 757.073588147754 65.811 0.38414 65.811 65.573 65.957 0 34 12 4 0.955760817882675 0.00144678408577448 0.0231276064282359 0.023948 1 15465 75.463 58.061 1 13398000 10077 13726 10760 12783 10677 12139 12132 11616 14069 8238.2 9537.9 12961 10797 13173 10863 12205 12332 11920 13800 8026.1 1 1 1 1 1 1 1 1 1 1 745 275 656 699 825 825 DDPVTNLNNAFEVAEK 16 Unmodified _DDPVTNLNNAFEVAEK_ 0 0 0 0 O43707 O43707 O43707 ACTN4 Alpha-actinin-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.397705078125 3 592.619729 1774.83736 38619.0803763166 1.5584 0.00092351 257800 152.78 257800 152.78 745.732110562654 87.631 0.73051 87.631 87.408 88.139 0 40 24 3 0.725837009663317 0.000983479300764349 0.0102396846431034 9.0786E-05 1 20450 115.87 78.317 1 7441100 6163.2 5991.1 7153.3 6067.2 6573 8080 6311.1 7256.6 6903.7 18601 5835.7 5660 7138.5 6257.3 6701.5 8033.9 6453 7871.3 6786.8 17683 1 1 1 1 1 1 1 1 1 1 746 122 657 700 826 826 DDTIYEDEDVKEAIR 15 Unmodified _DDTIYEDEDVKEAIR_ 0 0 0 1 P14927 P14927 P14927 UQCRB Cytochrome b-c1 complex subunit 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.393859863281 3 604.282894 1809.82685 35882.8846659687 1.7542 0.00106 252820 152.78 252820 152.78 757.392786203934 66.067 0.39172 66.067 65.897 66.288 0 40 12 4 0.951149475945929 0.00301982219168764 0.0255484790803839 5.8854E-08 1 15515 174.95 143.53 1 18267000 16233 18820 19272 19425 20062 20184 17551 20019 17196 9688.5 15372 17782 19236 19920 20277 20214 17977 20378 16983 9586.2 1 1 1 1 1 1 1 1 1 1 747 393 658 701 827 827 DEILPTTPISEQK 13 Phospho (STY) _DEILPTT(ph)PISEQK_ DEILPT(0.002)T(0.998)PISEQK DEILPT(-26.62)T(26.62)PIS(-58.81)EQK 0 0 1 0 P23396 P23396 P23396 RPS3 40S ribosomal protein S3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.358703613281 3 517.583166 1549.72767 38021.6903283799 1.7013 0.00088059 295170 152.78 295170 152.78 670.359279501044 75.792 2.1447 75.792 75.4 77.545 0 241 73 6 0.939685439451333 0.00794176329267293 0.374084914900958 9.8226E-07 1 17723 140.3 113.76 3 970790000 7040.4 10592 6447.1 11487 6664 6701.6 6968.6 8776.6 11281 5253.5 6659.8 10011 6529.2 11663 6758.2 6966.9 7196.9 8881.5 10948 5149.9 1 1 1 1 1 1 1 1 1 1 748 464 659 702 828 828 4425 DEILPTTPISEQK 13 Phospho (STY) _DEILPTT(ph)PISEQK_ DEILPT(0.167)T(0.82)PIS(0.013)EQK DEILPT(-6.91)T(6.91)PIS(-18.06)EQK 0 0 1 0 P23396 P23396 P23396 RPS3 40S ribosomal protein S3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1005.53887939453 2 775.871111 1549.72767 31120.0315047565 1.4457 0.0011217 295360 229.16 295360 229.16 1005.03422778093 75.816 1.2457 75.816 75.431 76.676 -1.4211E-14 179 42 6 0.840388256249122 0.00155304725332861 0.131752537661879 8.9976E-05 1 17908 129.37 97.073 3 494120000 6397.2 12675 7401 12288 8261.6 7691.9 7440.2 10361 13613 16477 6057.2 11971 7403.6 12566 8327.3 7979.6 7782 10785 13171 15755 1 1 1 1 1 1 1 1 1 1 749 464 659 702 829 829 4425 DELHIVEAEAMNYEGSPIK 19 Oxidation (M),Phospho (STY) _DELHIVEAEAM(ox)NYEGS(ph)PIK_ DELHIVEAEAM(1)NYEGSPIK DELHIVEAEAMNY(0.004)EGS(0.996)PIK DELHIVEAEAM(118.35)NYEGSPIK DELHIVEAEAMNY(-23.8)EGS(23.8)PIK 0 1 1 0 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.082641601563 4 560.999984 2239.97083 37593.3046127104 1.7164 0.00096288 204240 114.58 204240 114.58 675.830791859202 82.935 1.1827 82.935 82.287 83.47 0 145 40 5 0.924761424153191 0.0020203031173265 0.00911827927492683 4.1474E-05 1 19376 118.35 100.65 2 16828000 2689.9 3259.7 3205.9 4169 3627.9 2824.9 4115.1 3992.5 4232.4 9393.3 2547.2 3084.5 3204.6 4203.5 3663.7 2923.9 4168.6 4242.6 4171.1 8937.4 1 1 1 1 1 1 1 1 1 1 750 315 660 703 830 830 32 517 DELHIVEAEAMNYEGSPIK 19 Phospho (STY) _DELHIVEAEAMNYEGS(ph)PIK_ DELHIVEAEAMNYEGS(1)PIK DELHIVEAEAMNY(-60.3)EGS(60.3)PIK 0 0 1 0 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.444763183594 3 742.332582 2223.97592 33181.5095860245 1.6526 0.0012268 205800 152.77 205810 152.78 895.442275886156 89.006 1.2172 89.006 88.623 89.841 0 156 41 6 0.907671632385044 0.00580727137954143 0.0472277822975786 5.2524E-11 1 20717 184.47 150.83 2 67735000 7525.7 9268.8 6733.3 9488.2 10037 7506.9 10753 9610.5 10338 15856 7118.3 8757.2 6867.4 9696.9 10000 7669.2 10900 10036 10218 15153 1 1 1 1 1 1 1 1 1 1 751 315 660 704 831 831 517 DELPLTCTLEFK 12 Phospho (STY) _DELPLT(ph)CTLEFK_ DELPLT(0.957)CT(0.043)LEFK DELPLT(13.45)CT(-13.45)LEFK 0 0 1 0 REV__O75923 REV__O75923 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.676391601563 3 515.901731 1544.68336 37373.2203565443 1.9039 0.00098221 296130 152.77 296130 152.77 668.675130847296 83.014 0.5569 83.014 82.796 83.353 -1.4211E-14 49 18 3 0.906753512201724 0.00369507455899415 0.0138347125015773 0.056604 1 19412 47.288 11.095 2 16004000 9455.9 4294.9 10680 3389.5 8539.6 9306.1 8721.5 8264 4353 5306.3 8952.3 4052 10658 3630.5 8790.9 9060.8 8749.4 8489.7 4480.4 5187.8 1 1 1 1 1 1 1 1 1 1 + 752 2328 661 705 832 832 4860 DELTESPK 8 Phospho (STY) _DELTES(ph)PK_ DELT(0.001)ES(0.999)PK DELT(-30.09)ES(30.09)PK 0 0 1 0 Q8NC51 Q8NC51 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.872375488281 2 499.707537 997.400522 37123.9673074751 1.7298 0.00086441 458600 229.16 458600 229.16 728.871178152387 47.985 0.67853 47.985 47.656 48.334 0 44 22 3 0.972173359085956 0.00115041121108443 0.0343021032423811 0.00012472 1 11105 136.49 87.07 2 17233000 21119 28034 18601 28087 12959 19302 12085 20215 29145 8782.7 19975 26483 18804 28695 13488 19767 12810 20506 28034 8737.8 1 1 1 1 1 1 1 1 1 1 753 1493 662 706 833 833 2741 DELTESPKYIQK 12 Phospho (STY) _DELTES(ph)PKYIQK_ DELT(0.031)ES(0.969)PKYIQK DELT(-14.94)ES(14.94)PKY(-53.89)IQK 0 0 1 1 Q8NC51 Q8NC51 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.403869628906 3 510.907762 1529.70146 37807.2831489191 2.1439 0.0010953 448540 229.16 448540 229.16 740.07014436573 62.767 0.46909 62.767 62.492 62.961 0 44 15 4 0.94993772671191 0.00140124225421992 0.0102509845651312 0.0020252 1 14762 95.57 69.747 3 14490000 10099 13157 9710 14142 9128.5 12444 8524.1 12010 16800 8637.4 9555 12435 9791.6 14433 9297.2 12560 8932.4 12324 16225 8411.1 1 1 1 1 1 1 1 1 1 1 754 1493 663 707 834 834 2741 DESRSVGRISK 11 2 Phospho (STY) _DES(ph)RS(ph)VGRISK_ DES(0.999)RS(1)VGRIS(0.001)K DES(30.92)RS(35.4)VGRIS(-30.92)K 0 0 2 2 Q9NRY6 Q9NRY6 Q9NRY6 PLSCR3 Phospholipid scramblase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.977966308594 3 465.200601 1392.57997 38957.0789311768 1.5578 0.00072471 328410 152.78 328410 152.78 617.976815161849 52.501 0.65584 52.501 52.127 52.783 0 55 22 4 0.778603704577245 0.00193525723742337 0.0391294786379605 0.050687 1 12230 41.967 9.9042 3 16401000 27670 11535 28453 14172 11655 27007 12002 19914 13149 4406.9 26186 10912 28400 14597 12825 26417 12232 20383 12925 4610.5 1 1 1 1 1 1 1 1 1 1 755 2021 664 708 835 835 3672;3673 DEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSR 36 Phospho (STY) _DEVVS(ph)PLPSALQGPSGSLSAPPAASVISAPPSSSSR_ DEVVS(0.981)PLPS(0.019)ALQGPSGSLSAPPAASVISAPPSSSSR DEVVS(17.11)PLPS(-17.11)ALQGPS(-58.69)GS(-63.69)LS(-73.36)APPAAS(-103.41)VIS(-113.21)APPS(-122.76)S(-122.61)S(-122.46)S(-122.31)R 0 0 1 0 Q7L2J0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1238.29357910156 3 1161.5732 3481.69777 28338.6704769055 1.793 0.0020827 65761 76.386 65762 76.388 1238.29209328263 92.149 0.34155 92.149 91.998 92.34 0 34 11 4 0.889610352763606 0.00139469337440333 0.0281317737587638 6.3776E-06 1 21475 127.45 117.86 11 9426300 509.34 1504.5 998.37 1410.5 1624.9 910.75 1086.1 1603.1 2145.1 22016 483.8 1420.7 983.84 1446 1605.4 985.34 1160.4 2244.6 2071.7 20768 1 1 1 1 1 1 1 1 1 1 756 1317 665 709 836 836 2354 DFQDYMEPEEGCQGSPQR 18 Phospho (STY) _DFQDYMEPEEGCQGS(ph)PQR_ DFQDYMEPEEGCQGS(1)PQR DFQDY(-48.96)MEPEEGCQGS(48.96)PQR 0 0 1 0 O43237 O43237 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.003295898438 3 751.613531 2251.81876 34818.2871592499 1.8895 0.0014202 101630 76.388 101630 76.389 828.335756108643 71.015 0.48948 71.015 70.795 71.285 0 38 16 3 0.621977182179395 0.000254289561413967 0.00508155134843505 0.0077191 1 16706 80.477 71.998 2 7932500 5824.7 7159 5826.7 7478 5810.6 5503.7 6577.5 7280.9 7884.9 15684 5511.7 6764.7 5868.3 7627 5909.7 5656.6 6694.3 7706.9 7724.6 14937 1 1 1 1 1 1 1 1 1 1 757 101 666 710 837 837 168 DFQEYVEPGEDFPASPQRR 19 Phospho (STY) _DFQEYVEPGEDFPAS(ph)PQRR_ DFQEYVEPGEDFPAS(1)PQRR DFQEY(-120.63)VEPGEDFPAS(120.63)PQRR 0 0 1 1 Q9Y6G9 Q9Y6G9 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 859.728393554688 3 783.005745 2345.99541 34033.7214160868 1.6806 0.0013159 97558 76.389 97560 76.39 859.728052175489 73.55 0.97192 73.55 73.185 74.157 0 85 33 3 0.781090744734095 0.00459352213216852 0.0391272005992448 1.8539E-07 1 17254 147.22 123.13 2 35820000 9977.8 10156 8480.5 11146 8619.2 8911.4 10461 10400 14698 37827 9435.9 9600 8630.7 11348 8768.6 9122 10676 11514 14323 35859 1 1 1 1 1 1 1 1 1 1 758 2313 667 711 838 838 4265 DFSALESQLQDTQELLQEENR 21 Unmodified _DFSALESQLQDTQELLQEENR_ 0 0 0 0 P35579 P35579 P35579 MYH9 Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 908.454467773438 3 831.729507 2492.16669 32024.9320669239 1.9748 0.0016425 91842 76.388 91844 76.389 908.451702825624 100.13 0.14206 100.13 100.06 100.2 -1.4211E-14 18 4 6 0.990732810939175 0.0188522335333976 0.340320079772063 6.8497E-24 1 23362 282.97 262.35 1 182640000 11506 7332.6 13128 7159.4 13925 17050 13530 12896 6903.6 41651 10894 6925.9 13135 7520.5 14072 16675 13610 14352 7092.9 39518 1 1 1 1 1 1 1 1 1 1 759 547 668 712 839 839 DFSPEALKK 9 Phospho (STY) _DFS(ph)PEALKK_ DFS(1)PEALKK DFS(125.82)PEALKK 0 0 1 1 O15372 O15372 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 601.340454101563 3 372.177524 1113.51074 40900.3304400079 1.4311 0.00053263 615740 229.16 615740 229.16 601.340896107889 70.566 0.72506 70.566 70.13 70.855 0 47 24 3 0.979466507764637 0.000926321975108121 0.00341368464188697 0.00016786 1 16563 125.82 73.977 1 14059000 8702.5 13776 8441.7 13668 8287.5 10566 8628.1 11401 16287 7935.9 8233.8 13013 8514.1 13991 8431.3 10755 8976 11643 15745 7736.5 1 1 1 1 1 1 1 1 1 1 760 90 669 713 840 840 155 DFTNEAPPAPLPDASASPLSPHRR 24 Phospho (STY) _DFTNEAPPAPLPDAS(ph)ASPLSPHRR_ DFTNEAPPAPLPDAS(0.426)AS(0.148)PLS(0.426)PHRR DFT(-95.05)NEAPPAPLPDAS(0)AS(-4.59)PLS(0)PHRR 0 0 1 1 Q6WCQ1 Q6WCQ1 Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.359008789063 4 656.562971 2622.22278 36754.244997934 1.7316 0.0011369 87259 57.291 87260 57.292 714.356556365067 67.493 0.85386 67.493 67.062 67.916 0 80 28 4 0.865770940778666 0.00302114947941054 0.0604434514110687 7.6027E-05 1 15849 105.44 88.162 4 17401000 5953 6733.1 8022.9 8004.2 6401 7443.5 6120.8 8320.7 6743.3 8754.6 5640.8 6367.7 7939.2 8131.8 6588.1 7513.5 6260.9 8576.1 6627.2 8436.1 1 1 1 1 1 1 1 1 1 1 761 1285 670 714 841 841 2288;2289 DGDGVPGGGPLSPAR 15 Phospho (STY) _DGDGVPGGGPLS(ph)PAR_ DGDGVPGGGPLS(1)PAR DGDGVPGGGPLS(227.63)PAR 0 0 1 0 Q92888 Q92888 Q92888 ARHGEF1 Rho guanine nucleotide exchange factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.898376464844 2 716.316838 1430.61912 34788.2311405085 1.3506 0.00096745 159960 114.58 159960 114.58 830.898391642269 52.173 0.7434 52.173 51.806 52.549 0 59 25 3 0.980154467552959 0.000552711933575981 0.00775938033847192 1.09E-15 1 12112 227.63 180.64 1 26162000 20847 13692 18978 13452 12643 19329 12460 15795 15267 14865 19719 12933 19139 13921 13204 19095 12769 16429 14945 14363 1 1 1 1 1 1 1 1 1 1 762 1628 671 715 842 842 3010 DGDSVMVLPTIPEEEAK 17 Unmodified _DGDSVMVLPTIPEEEAK_ 0 0 0 0 P30041 P30041 P30041 PRDX6 Peroxiredoxin-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.743530273438 3 610.632758 1828.87645 36034.2505601795 0.94479 0.00057692 250190 152.78 250190 152.78 763.740144836804 87.944 0.75806 87.944 87.438 88.196 0 69 25 4 0.944063948491111 0.00737765260801022 0.135833822191103 7.4532E-05 1 20534 113.69 93.304 1 21040000 9955.6 18334 9075.8 19387 16106 11429 19362 17352 20084 14722 9417.3 17326 9281.6 19714 15976 11913 19572 17619 19786 14264 1 1 1 1 1 1 1 1 1 1 763 506 672 716 843 843 DGEEAGAYDGPR 12 Unmodified _DGEEAGAYDGPR_ 0 0 0 0 P30101 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.341674804688 2 618.760006 1235.50546 36185.2212036031 1.1637 0.00072004 185180 114.58 185180 114.58 733.341464346095 34.938 0.49208 34.938 34.689 35.181 0 38 16 3 0.753300251253879 0.00196692024335266 0.0586069589963091 0.00033565 1 7827 123.38 85.298 1 28777000 27693 37205 26533 37400 44995 27008 48248 36244 41930 3076.6 26200 35147 27016 38223 44611 27657 48783 36090 41640 3735.8 1 1 1 1 1 1 1 1 1 1 764 511 673 717 844 844 DGEHVIDQGDDGDNFYVIDR 20 Unmodified _DGEHVIDQGDDGDNFYVIDR_ 0 0 0 0 P31323 P31323 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.0556640625 3 760.333088 2277.97743 34368.7459922388 1.701 0.0012933 100470 76.387 100470 76.388 837.054452068622 67.649 0.43722 67.649 67.387 67.824 0 44 14 4 0.937800805355195 0.00272032077536513 0.0701005741571136 2.3176E-12 1 15876 211.75 171.48 1 14633000 7690.1 10116 9038.3 10730 6232.1 8484.2 6216.3 9373.5 9821.9 16175 7281.8 9559.6 8989.1 10943 6493.3 8646 6427.2 9855.3 9538.3 15448 1 1 1 1 1 1 1 1 1 1 765 519 674 718 845 845 DGELPVEDDIDLSDVELDDLGKDEL 25 Phospho (STY) _DGELPVEDDIDLS(ph)DVELDDLGKDEL_ DGELPVEDDIDLS(1)DVELDDLGKDEL DGELPVEDDIDLS(233.87)DVELDDLGKDEL 0 0 1 1 Q15084 Q15084 Q15084 PDIA6 Protein disulfide-isomerase A6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1099.86010742188 3 946.749512 2837.22671 29543.5855613305 1.041 0.00098553 161370 152.78 161370 152.78 1099.85852308912 101.32 1.4669 101.32 101.16 102.63 0 102 50 8 0.9904037596788 0.0402760448324206 1 6.4478E-18 2 23794 233.87 218.83 1 289740000 10946 11363 10667 13541 31553 10930 26468 29542 14446 729420 10357 10747 11003 13729 30704 12680 26858 50890 14764 687520 2 2 2 2 2 2 2 2 2 2 766 1059 675 719 846;847 846 1827 DGELPVEDDIDLSDVELDDLGKDEL 25 Phospho (STY) _DGELPVEDDIDLS(ph)DVELDDLGKDEL_ DGELPVEDDIDLS(1)DVELDDLGKDEL DGELPVEDDIDLS(156.27)DVELDDLGKDEL 0 0 1 1 Q15084 Q15084 Q15084 PDIA6 Protein disulfide-isomerase A6 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1099.52331542969 3 946.749512 2837.22671 NaN NaN NaN NaN NaN NaN NaN NaN 102.65 1 102.65 102.15 103.15 0 NaN NaN NaN 2.146E-07 1 24190 156.27 134.66 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 767 1059 675 719 848 848 1827 DGGNPFAEPSELDNPFQDPAVIQHRPSR 28 Phospho (STY) _DGGNPFAEPSELDNPFQDPAVIQHRPS(ph)R_ DGGNPFAEPSELDNPFQDPAVIQHRPS(1)R DGGNPFAEPS(-91.82)ELDNPFQDPAVIQHRPS(91.82)R 0 0 1 1 O14828 O14828 O14828 SCAMP3 Secretory carrier-associated membrane protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 850.905944824219 4 793.36364 3169.42546 34549.440553894 1.2715 0.0010088 72213 57.291 72214 57.292 850.904905448533 85.763 0.65581 85.763 85.387 86.043 0 50 22 3 0.963078180995709 0.00164039062916584 0.030387672436424 2.6066E-07 1 20054 141.44 124.91 2 14069000 2819.5 3653.9 2781.1 3342 2833.1 3261.7 3286.1 2583.7 3094.9 14150 2667.8 3450 2804.1 3449.2 2878.1 3291.1 3318 3044.3 3061.9 13384 1 1 1 1 1 1 1 1 1 1 768 67 676 720 849 849 111 DGGQTESNEEGKENR 15 Unmodified _DGGQTESNEEGKENR_ 0 0 0 1 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.681945800781 3 550.571438 1648.69248 37246.380881139 2.0031 0.0011029 277490 152.78 277490 152.78 703.34713667682 24.036 0.23313 24.036 23.903 24.136 0 27 7 5 0.991242551309509 0.010053844551045 0.1201204823604 3.4736E-10 1 5379 186.85 169.11 1 12441000 8714.5 7367.1 9360.8 8229.5 5459 9677.9 6320.9 8569.4 9003.6 1869 8248.6 6964.4 9342.5 8420.4 5784.9 9625.6 6466.2 8695 8770 1958.3 1 1 1 1 1 1 1 1 1 1 769 993 677 721 850 850 DGLAPEKTSPDR 12 Phospho (STY) _DGLAPEKTS(ph)PDR_ DGLAPEKT(0.038)S(0.962)PDR DGLAPEKT(-14.02)S(14.02)PDR 0 0 1 1 Q7L4I2 Q7L4I2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.648986816406 3 455.873051 1364.59732 41042.9110404032 1.3885 0.00063297 335130 152.77 335130 152.78 608.647849481504 43.27 0.81395 43.27 42.737 43.551 0 76 27 5 0.724705260610057 0.00667303871471703 0.0599813382568284 3.5258E-05 1 9903 130.02 95.061 2 66060000 58252 57339 56781 69924 53245 45617 44971 54258 69561 2218.3 55116 54237 57201 70637 54149 46922 46848 54157 67593 3344.6 1 1 1 1 1 1 1 1 1 1 770 1318 678 722 851 851 2360 DGLAPEKTSPDRDK 14 Phospho (STY) _DGLAPEKTS(ph)PDRDK_ DGLAPEKT(0.115)S(0.885)PDRDK DGLAPEKT(-8.88)S(8.88)PDRDK 0 0 1 2 Q7L4I2 Q7L4I2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.810119628906 4 402.937084 1607.71923 41128.7074392785 1.8055 0.00072751 426550 171.87 426550 171.87 574.809797062984 44.56 1.0078 44.56 44.199 45.207 0 102 34 5 0.984922723473804 0.00234388158413961 0.0277533692758245 0.00011203 1 10212 116.6 89.833 2 55109000 13304 16986 14039 18514 14247 17480 15605 18236 16090 2694.7 12592 16055 14100 18900 14466 17581 15833 18344 15856 2959.4 1 1 1 1 1 1 1 1 1 1 771 1318 679 723 852 852 2360 DGLNQTTIPVSPPSTTKPSR 20 Phospho (STY) _DGLNQTTIPVS(ph)PPSTTKPSR_ DGLNQTTIPVS(0.931)PPS(0.019)T(0.025)T(0.025)KPSR DGLNQT(-45.28)T(-38.53)IPVS(15.68)PPS(-17)T(-15.68)T(-15.68)KPS(-40.5)R 0 0 1 1 Q71RC2 Q71RC2 Q71RC2 LARP4 La-related protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.139099121094 3 726.026369 2175.05728 33332.6555144394 1.5614 0.0011336 210430 152.78 210430 152.78 879.136489681041 62.373 1.308 62.373 61.566 62.874 0 180 44 5 0.907452883272546 0.00154364187111478 0.0183763390652128 1.5172E-07 2 14511 140.8 108.98 7 64797000 20930 29996 20546 32609 18941 21451 16802 23516 33994 20629 19803 28351 20687 33143 19302 22065 17676 24130 32813 19969 2 2 2 2 2 2 2 2 2 2 772 1309 680 724 853;854 853 2336 DGLPRTPSR 9 Phospho (STY) _DGLPRT(ph)PSR_ DGLPRT(0.986)PS(0.014)R DGLPRT(18.38)PS(-18.38)R 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 436.560577392578 3 360.172884 1077.49682 47263.476847825 0.61859 0.0002228 212090 76.388 212090 76.388 436.560420827379 32.772 0.84493 32.772 32.267 33.112 -7.1054E-15 86 28 5 0.862289625327901 0.002622560142203 0.0351167022158303 0.016979 1 7279 80.522 45.318 2 107390000 15925 17670 15734 18169 11420 16691 11924 15267 19284 1386.9 15068 16695 15803 18602 11858 16781 12315 15411 18715 1659.2 1 1 1 1 1 1 1 1 1 1 773 2226 681 725 855 855 4821 DGMDNQGGYGSVGR 14 Phospho (STY) _DGMDNQGGYGS(ph)VGR_ DGMDNQGGYGS(1)VGR DGMDNQGGY(-99.4)GS(99.4)VGR 0 0 1 0 P31942 P31942 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.364318847656 2 746.779762 1491.54497 33621.2616585956 1.8668 0.0013941 153440 114.58 153440 114.58 861.365036170973 41.374 0.66049 41.374 40.966 41.626 0 39 22 3 0.691747231086266 0.000590611654310576 0.0107513005238737 2.3312E-05 1 9442 136.08 114.02 2 8281200 10647 12874 10223 14415 17381 11172 18794 13204 13720 9351.9 10073 12170 10409 14655 17231 11386 18924 13448 13753 9111.5 1 1 1 1 1 1 1 1 1 1 774 523 682 726 856 856 851 DGPISPK 7 Phospho (STY) _DGPIS(ph)PK_ DGPIS(1)PK DGPIS(53.75)PK 0 0 1 0 Q8WWQ0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.340576171875 2 397.178219 792.341885 39286.6983474743 1.9605 0.00077866 576980 229.16 576980 229.16 626.341453295797 46.746 0.65827 46.746 46.464 47.122 0 63 22 4 0.75007466178882 0.00127763267081691 0.017851661582266 0.044891 1 10757 53.751 26.448 1 45531000 28054 24495 29543 25461 18539 29531 19884 24843 26642 6053.5 26552 23145 29530 26149 19489 29371 20361 25284 26001 6275.1 1 1 1 1 1 1 1 1 1 1 775 1577 683 727 857 857 2902 DGPPSALGSR 10 Phospho (STY) _DGPPSALGS(ph)R_ DGPPSALGS(1)R DGPPS(-45.68)ALGS(45.68)R 0 0 1 0 Q86YV0 Q86YV0 Q86YV0 RASAL3 RAS protein activator like-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.308654785156 2 518.726596 1035.43864 39722.724951945 1.3844 0.00071811 220890 114.58 220890 114.58 633.307820380527 40.333 0.62286 40.333 40.006 40.629 0 52 20 3 0.98769635297913 0.00144824533791046 0.0249230598783414 0.015773 1 9153 71.268 56.117 2 35477000 25276 14478 26311 15009 31735 28067 32908 24012 14444 4928.5 23922 13680 26502 15588 31884 27508 32935 24391 15035 5196.5 1 1 1 1 1 1 1 1 1 1 776 1404 684 728 858 858 2551 DGPPSALGSRESLATLSELDLGAER 25 Phospho (STY) _DGPPSALGS(ph)RESLATLSELDLGAER_ DGPPS(0.001)ALGS(0.999)RESLATLSELDLGAER DGPPS(-28.56)ALGS(28.56)RES(-49.15)LAT(-86.94)LS(-126.06)ELDLGAER 0 0 1 1 Q86YV0 Q86YV0 Q86YV0 RASAL3 RAS protein activator like-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 951.142150878906 3 874.419995 2620.23815 31758.3430495132 0.99403 0.0008692 87359 76.388 87360 76.389 951.142568570232 91.54 0.71511 91.54 91.195 91.91 1.4211E-14 99 24 5 0.971122633581347 0.00272585005333522 0.0264449021702043 4.0257E-18 1 21288 240.19 217.87 5 67708000 3628.6 2176.2 5206.9 1964.5 6660 4430.6 6004.5 5071.6 1261.1 60383 3439.5 2054.6 5168.9 2069.6 6659 4452.7 6013.7 6881.8 1445.5 56975 1 1 1 1 1 1 1 1 1 1 777 1404 685 729 859 859 2551 DGQDAIAQSPEK 12 Phospho (STY) _DGQDAIAQS(ph)PEK_ DGQDAIAQS(1)PEK DGQDAIAQS(125.52)PEK 0 0 1 0 Q9NWH9 Q9NWH9 Q9NWH9 SLTM SAFB-like transcription modulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.6337890625 3 446.85729 1337.55004 40237.8202883449 1.3368 0.00059734 341890 152.78 341890 152.78 599.968206595757 43.171 0.70016 43.171 42.737 43.437 0 109 23 6 0.969934316729056 0.00419932384900077 0.0443557498727487 5.3912E-05 1 9814 125.52 101.68 1 132960000 19042 21929 21155 23736 21696 18162 20519 21143 26425 3971.2 18027 20726 21185 24172 21974 18498 21105 21212 25823 4228.7 1 1 1 1 1 1 1 1 1 1 778 2054 686 730 860 860 3716 DGQDAIAQSPEKESK 15 Phospho (STY) _DGQDAIAQS(ph)PEKESK_ DGQDAIAQS(0.997)PEKES(0.003)K DGQDAIAQS(25.3)PEKES(-25.3)K 0 0 1 1 Q9NWH9 Q9NWH9 Q9NWH9 SLTM SAFB-like transcription modulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.078979492188 3 561.580485 1681.71962 34580.043422619 1.8661 0.001048 408070 229.16 408070 229.16 791.07742372049 43.482 0.81338 43.482 43.121 43.934 0 117 27 7 0.983807969998318 0.0130783797275525 0.0389324014228138 7.9902E-11 1 9940 197.85 152.71 2 284040000 103490 126630 114840 129690 122070 110820 125300 124870 140730 19207 97973 119640 115080 132670 123510 112130 127810 125290 138200 20975 1 1 1 1 1 1 1 1 1 1 779 2054 687 731 861 861 3716 DGQVINETSQHHDDLE 16 Phospho (STY) _DGQVINETS(ph)QHHDDLE_ DGQVINET(0.349)S(0.651)QHHDDLE DGQVINET(-2.7)S(2.7)QHHDDLE 0 0 1 0 P08670 P08670 P08670 VIM Vimentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 715.982116699219 3 639.593453 1915.75853 37238.4330453665 1.6014 0.0010242 119430 76.388 119430 76.389 716.314896005823 43.099 0.66972 43.099 42.795 43.465 0 92 22 5 0.963531051528119 0.00509659592214998 0.0420324075246371 1.0362E-05 1 9849 135.91 125.07 2 95340000 23380 26666 23794 21284 31507 24556 27333 25008 28301 6633.3 22125 25160 24022 22235 31460 24486 28050 25267 27884 6824.8 1 1 1 1 1 1 1 1 1 1 780 336 688 732 862 862 549 DGSISPVSSECSVVER 16 Phospho (STY) _DGSIS(ph)PVSSECSVVER_ DGS(0.001)IS(0.984)PVS(0.015)SECSVVER DGS(-32.6)IS(18.08)PVS(-18.08)S(-35.21)ECS(-87.89)VVER 0 0 1 0 Q8NCP5 Q8NCP5 Q8NCP5 ZBTB44 Zinc finger and BTB domain-containing protein 44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1008.96270751953 2 894.379506 1786.74446 31388.88639003 1.0019 0.00089607 128110 114.58 128110 114.58 1008.96033009917 55.853 0.41609 55.853 55.623 56.039 0 31 13 3 0.902293969324478 0.000736444297746428 0.0204640366808348 1.1904E-31 1 13034 316.86 280.29 5 21799000 12399 8659.5 12031 8366.5 15991 12465 16853 12807 8239.2 7525.6 11731 8178.6 12185 8674.2 15998 12330 16877 13060 8494.9 7382.6 1 1 1 1 1 1 1 1 1 1 781 1499 689 733 863 863 2752 DGSLASNPYSGDLTK 15 Phospho (STY) _DGSLASNPYS(ph)GDLTK_ DGSLASNPYS(1)GDLTK DGS(-85.97)LAS(-66.92)NPY(-65.5)S(65.5)GDLT(-72.85)K 0 0 1 0 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.34033203125 3 535.566175 1603.6767 38176.9081957063 2.0068 0.0010748 285260 152.78 285260 152.78 688.67565622238 67.1 0.63853 67.1 66.836 67.475 0 61 21 4 0.635164471857305 0.00331777234948352 0.0668627705072033 6.7395E-07 1 15732 144.82 108.79 5 25786000 10285 17036 9822.5 14674 14324 9692.5 12548 14000 17088 7137.9 9730.9 16080 9969.1 15131 14250 10005 12982 14092 16668 7045.2 1 1 1 1 1 1 1 1 1 1 782 993 690 734 864 864 1678 DGVLTLANNVTPAK 14 Phospho (STY) _DGVLTLANNVT(ph)PAK_ DGVLTLANNVT(1)PAK DGVLT(-37.18)LANNVT(37.18)PAK 0 0 1 0 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.361877441406 3 498.251751 1491.73342 39463.1393261762 1.8395 0.00091654 306620 152.77 306620 152.77 651.359356947878 76.71 0.43781 76.71 76.417 76.854 0 42 14 4 0.82958191525699 0.00178382306387086 0.029380888411196 0.039256 1 17987 56.482 44.336 2 8855800 7030.3 7125.4 9256.8 7378.8 5509.5 6806.3 5961.2 8018.5 8663.1 4630.3 6660.8 6732.5 9148 7551.6 5821.2 6871.7 6120.3 8135.7 8433.3 4545.6 1 1 1 1 1 1 1 1 1 1 783 491 691 735 865 865 4435 DGVSLGAVSSTEEASR 16 Phospho (STY) _DGVSLGAVS(ph)STEEASR_ DGVSLGAVS(0.489)S(0.489)T(0.021)EEASR DGVS(-72.63)LGAVS(0)S(0)T(-13.58)EEAS(-99.51)R 0 0 1 0 B2RUZ4 B2RUZ4 B2RUZ4 SMIM1 Small integral membrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 937.440856933594 2 822.859264 1643.70397 32517.0221339441 1.7053 0.0014032 139250 114.58 139250 114.58 937.440553662771 57.044 0.5822 57.044 56.752 57.334 0 59 19 4 0.977824312981521 0.00123409708335403 0.0123039011383927 2.0895E-41 1 13306 331.34 283.77 5 54985000 4311.3 17499 4204.8 18618 26104 3278.8 24163 16137 17899 12151 4079.1 16537 4504.6 18801 25164 4155.2 24518 16055 17927 11815 1 1 1 1 1 1 1 1 1 1 784 16 692 736 866 866 30;31;32 DGVSLGAVSSTEEASR 16 Phospho (STY) _DGVSLGAVS(ph)STEEASR_ DGVSLGAVS(0.819)S(0.18)T(0.001)EEASR DGVS(-102.19)LGAVS(6.57)S(-6.57)T(-29.28)EEAS(-91.96)R 0 0 1 0 B2RUZ4 B2RUZ4 B2RUZ4 SMIM1 Small integral membrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.297790527344 3 548.908601 1643.70397 39691.8301169648 1.3389 0.00073492 139160 76.387 139160 76.388 625.295881929501 57.011 0.64106 57.011 56.722 57.363 7.1054E-15 62 21 5 0.966999508031629 0.0028885489670025 0.0212785544204611 1.4122E-10 1 13340 179.75 155.19 5 25350000 7557.3 10554 6816.1 10574 11265 8219 10744 9788.5 10618 8896.9 7148.3 9970.4 6959.5 10818 11161 8379.9 10958 10026 10482 8604.1 1 1 1 1 1 1 1 1 1 1 785 16 692 736 867 867 30;31;32 DGVSLGAVSSTEEASR 16 Phospho (STY) _DGVS(ph)LGAVSSTEEASR_ DGVS(1)LGAVSSTEEASR DGVS(39.5)LGAVS(-39.5)S(-52.83)T(-72.44)EEAS(-152.32)R 0 0 1 0 B2RUZ4 B2RUZ4 B2RUZ4 SMIM1 Small integral membrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 937.441467285156 2 822.859264 1643.70397 32744.8944124305 1.6533 0.0013604 139250 114.58 139250 114.58 937.440074711408 62.161 0.39911 62.161 61.92 62.319 0 33 13 3 0.981570343505047 0.00133295829729312 0.0616322739355698 7.2663E-16 1 14602 233.9 212.5 5 16517000 4356.3 11071 5197.8 10140 15807 4851.8 17183 13505 12026 47610 4125.3 10453 5318 10384 15429 5297.4 17284 14646 12085 45143 1 1 1 1 1 1 1 1 1 1 786 16 692 736 868 868 30;31;32 DGWSLDR 7 Phospho (STY) _DGWS(ph)LDR_ DGWS(1)LDR DGWS(66.3)LDR 0 0 1 0 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.262329101563 2 464.681657 927.348761 40898.9255043258 1.6436 0.00076377 246580 114.58 246580 114.58 579.262992000159 61.932 0.6153 61.932 61.621 62.237 7.1054E-15 56 20 4 0.886823254205898 0.000906781969329995 0.0268798390006805 0.022802 1 14496 66.299 32.093 1 28288000 13028 12410 14942 13301 12712 15793 11953 14095 13441 4577.2 12335 11729 14907 13643 13022 15706 12244 14342 13199 4636.2 1 1 1 1 1 1 1 1 1 1 787 1755 693 737 869 869 3219 DGYGGSRDSYSSSR 14 Phospho (STY) _DGYGGSRDS(ph)YSSSR_ DGYGGSRDS(1)YSSSR DGY(-100.26)GGS(-36.41)RDS(36.41)Y(-75.59)S(-37.7)S(-55.8)S(-69.53)R 0 0 1 1 Q96E39;P38159 Q96E39;P38159 P38159 RBMXL1;RBMX RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 601.590759277344 3 525.202008 1572.58419 40936.8577670562 1.7314 0.00090936 145440 76.388 145450 76.389 601.590006589719 28.2 0.74315 28.2 28.008 28.751 -3.5527E-15 85 25 6 0.933791110283934 0.00502637824111528 0.135912500953677 6.8733E-07 1 6268 146.67 112.87 7 47244000 8343 12049 9460 10747 10371 8794.9 10923 10195 11203 3250.3 7898.8 11375 9473.7 11083 10479 8926.4 11100 10270 11043 3296.4 1 1 1 1 1 1 1 1 1 1 788 561;1669 694 738 870 870 907 DHNVGSPPK 9 Phospho (STY) _DHNVGS(ph)PPK_ DHNVGS(1)PPK DHNVGS(59.98)PPK 0 0 1 0 A0JNW5 A0JNW5 A0JNW5 UHRF1BP1L UHRF1-binding protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 496.926055908203 3 344.149968 1029.42807 43949.9150064661 0.97108 0.0003342 443920 152.78 443920 152.78 496.925731429549 32.813 0.90147 32.813 32.297 33.198 0 69 30 3 0.805267292195768 0.00280215162862307 0.021019781207814 0.016659 1 7327 59.975 42.244 1 27169000 12311 13551 11866 15192 16700 12772 14874 14533 14412 2642 11648 12810 12030 15460 16636 12937 15215 14589 14240 2824.1 1 1 1 1 1 1 1 1 1 1 789 2 695 739 871 871 3 DHSPTPSVFNSDEER 15 Phospho (STY) _DHS(ph)PTPSVFNSDEER_ DHS(1)PTPSVFNSDEER DHS(38.57)PT(-38.57)PS(-78.35)VFNS(-133.81)DEER 0 0 1 0 Q6UN15 Q6UN15 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.298583984375 3 599.575622 1795.70504 38009.7906806478 1.2192 0.00073098 127400 76.387 127400 76.388 676.297574573942 46.577 0.92018 46.577 46.258 47.178 -7.1054E-15 120 31 6 0.957627346675457 0.0135094027982269 0.0508588380535855 2.4734E-07 1 10727 164.58 134.84 4 245290000 21748 19373 25065 18253 21784 26230 20912 23948 18310 8126.8 20592 18294 25007 18938 22285 25923 21257 24355 18177 8206.6 1 1 1 1 1 1 1 1 1 1 790 1281 696 740 872 872 2280 DHTPSQELALTQSVGGDSSADR 22 Phospho (STY) _DHTPS(ph)QELALTQSVGGDSSADR_ DHT(0.103)PS(0.897)QELALTQSVGGDSSADR DHT(-9.41)PS(9.41)QELALT(-119.79)QS(-165.01)VGGDS(-189.13)S(-188.67)ADR 0 0 1 0 Q86U44 Q86U44 Q86U44 METTL3 N6-adenosine-methyltransferase 70 kDa subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.063293457031 3 784.343085 2350.00743 33824.4989903086 1.7598 0.0013803 97389 76.386 97390 76.387 861.063595279298 58.516 0.43585 58.516 58.321 58.756 0 36 14 3 0.981690086165626 0.00227977173557801 0.0555970496622056 8.4831E-17 1 13701 216.85 194.75 6 16388000 5697.8 5857.8 5529.1 5720.3 9939.7 7108.7 9362.1 7193.9 5891.6 11387 5391 5532.8 5630.1 5904.1 9815 7086 9462.5 7555.8 5960.5 10889 1 1 1 1 1 1 1 1 1 1 791 1365 697 741 873 873 2475 DHTVSGDEDYCPR 13 Phospho (STY) _DHTVS(ph)GDEDYCPR_ DHT(0.008)VS(0.992)GDEDYCPR DHT(-21.08)VS(21.08)GDEDY(-115.07)CPR 0 0 1 0 Q9UIG0 Q9UIG0 Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 930.377563476563 2 815.795609 1629.57667 33203.3688717833 1.6273 0.0013275 140450 114.58 140460 114.58 930.879235078369 35.163 0.50076 35.163 34.945 35.445 -7.1054E-15 36 16 3 0.96906493924942 0.00036563700932882 0.00400168708065239 1.092E-22 1 7891 265.34 244.91 3 10761000 6924.7 15140 7389.9 13576 7873.2 8823.6 9200.8 9295 14091 3986.1 6554.3 14293 7422.9 13958 7984.6 9069.9 9435.8 9425.4 13696 3968.5 1 1 1 1 1 1 1 1 1 1 792 2158 698 742 874 874 3884 DIDDDLEGEVTEECGK 16 Unmodified _DIDDDLEGEVTEECGK_ 0 0 0 0 Q9UHX1 Q9UHX1 Q9UHX1 PUF60 Poly(U)-binding-splicing factor PUF60 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.700439453125 3 608.587766 1822.74147 35971.8067843703 1.5589 0.00094874 251030 152.78 251030 152.78 761.363876236692 70.586 0.5232 70.586 70.361 70.884 -1.4211E-14 59 17 5 0.984907116953432 0.00205164377721587 0.00470157767823416 9.3086E-16 1 16556 218.68 181.52 1 48719000 18926 17800 18815 19108 17546 18321 18246 19889 18732 10116 17909 16822 18937 19527 17891 18438 18553 20194 18462 9985.8 1 1 1 1 1 1 1 1 1 1 793 2150 699 743 875 875 DIETFYNTSIEEMPLNVADLI 21 Unmodified _DIETFYNTSIEEMPLNVADLI_ 0 0 0 0 P60842 P60842 P60842 EIF4A1 Eukaryotic initiation factor 4A-I MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 886.448791503906 3 809.726046 2426.15631 33127.6408111291 1.7653 0.0014294 94337 76.387 94339 76.389 886.447980744218 103.7 0.22755 103.7 103.6 103.83 0 23 7 5 0.962228072069927 0.0114864511752608 0.272317469543786 1.5323E-11 1 24441 157.12 143.93 1 34624000 2348 2840 2340.5 2942.5 2800.2 2480.4 2702.4 4173.5 3053.9 26234 2221.8 2683.4 2362.7 3007.6 2813.5 2577.5 2765.2 4911.2 2998.4 24799 1 1 1 1 1 1 1 1 1 1 794 743 700 744 876 876 DIGAIAR 7 Unmodified _DIGAIAR_ 0 0 0 0 Q9BPU6 Q9BPU6 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 472.790405273438 2 358.208495 714.402438 50451.6408135511 -0.79453 -0.00028461 319870 114.58 319870 114.58 472.790218914668 47.362 0.33325 47.362 47.267 47.6 0 20 15 2 0.915281415063842 0.000493209486898424 0.00250158482389487 0.029919 1 10959 89.427 20.942 1 26602000 29609 28141 27595 28490 21985 29753 22426 25649 28015 1970.4 28010 26586 27835 29252 22653 29719 22959 25946 27406 2449 1 1 1 1 1 1 1 1 1 1 795 1798 701 745 877 877 DIIRQPSEEEIIK 13 Phospho (STY) _DIIRQPS(ph)EEEIIK_ DIIRQPS(1)EEEIIK DIIRQPS(172.6)EEEIIK 0 0 1 1 Q15121 Q15121 Q15121 PEA15 Astrocytic phosphoprotein PEA-15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.721740722656 3 550.609716 1648.80732 36333.0397154992 1.8633 0.001026 277470 152.78 277470 152.78 703.720339942081 70.842 0.40705 70.842 70.567 70.974 0 35 13 3 0.982576287285522 0.00367782134950138 0.0252055433218534 5.9194E-08 3 16584 172.6 141.64 1 112320000 109240 61083 117190 64703 85126 113540 80111 94478 73103 34456 103400 57723 117140 66999 88202 111460 81595 96545 72428 34631 3 3 3 3 3 3 3 3 3 3 796 1060 702 746 878;879;880 878 1828 DIISIAEDEDLR 12 Unmodified _DIISIAEDEDLR_ 0 0 0 0 P12956 P12956 P12956 XRCC6 X-ray repair cross-complementing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.431518554688 2 694.848821 1387.68309 34464.5136550706 1.6799 0.0011672 164900 114.58 164900 114.58 809.430046096864 84.827 0.68881 84.827 84.496 85.185 0 42 23 2 0.911056929549303 0.00486614001609968 0.191352692311228 9.6305E-16 1 19800 237.36 168.47 1 31109000 19899 16113 19351 15038 21429 18986 23261 19426 16569 17683 18828 15216 19546 15569 21643 18894 23407 20001 16632 17101 1 1 1 1 1 1 1 1 1 1 797 372 703 747 881 881 DINAYNCEEPTEK 13 Unmodified _DINAYNCEEPTEK_ 0 0 0 0 P30041 P30041 P30041 PRDX6 Peroxiredoxin-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.005249023438 3 528.227844 1581.6617 37371.5978289047 1.5957 0.00084289 289220 152.77 289220 152.78 681.336688053293 52.33 0.50666 52.33 52.101 52.607 0 65 17 5 0.770663388953111 0.00252523316270677 0.0312117065403998 1.492E-05 1 12160 135.91 101.02 1 39883000 14338 22158 15313 19769 16539 15076 16733 17754 23066 5159.1 13571 20919 15378 20369 16720 15365 17197 17860 22490 5268.8 1 1 1 1 1 1 1 1 1 1 798 506 704 748 882 882 DINLQDEDWNEFNDINK 17 Unmodified _DINLQDEDWNEFNDINK_ 0 0 0 0 Q6P2Q9 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.094299316406 3 707.983507 2120.92869 33548.6497917787 1.963 0.0013898 215790 152.77 215790 152.78 861.092934159251 90.567 0.48303 90.567 90.364 90.847 0 55 16 5 0.990198669389795 0.00416365897188043 0.0985390545172081 1.3363E-10 1 21098 176.81 134.94 1 21824000 11330 12125 10882 10573 10860 11590 10679 11731 10249 21290 10719 11445 10983 10967 11019 11613 10868 12403 10131 20319 1 1 1 1 1 1 1 1 1 1 799 1259 705 749 883 883 DIPRTPSR 8 Phospho (STY) _DIPRT(ph)PSR_ DIPRT(1)PSR DIPRT(37.4)PS(-37.4)R 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 417.553131103516 3 341.165729 1020.47536 49014.6594004271 0.39425 0.00013451 223900 76.388 223900 76.388 417.553379129575 30.997 1.2946 30.997 30.465 31.76 3.5527E-15 130 43 4 0.907403442080632 0.0166719525363178 0.676509434690429 0.0017794 1 6897 111.5 76.964 2 79057000 59774 61681 60084 58404 28505 58788 32022 52671 61156 3942.2 56563 58250 60103 60173 30868 58840 33225 53188 59107 4931.1 1 1 1 1 1 1 1 1 1 1 800 2226 706 750 884 884 4822 DISGPSPSK 9 Phospho (STY) _DISGPS(ph)PSK_ DIS(0.001)GPS(0.997)PS(0.002)K DIS(-28.29)GPS(28.2)PS(-28.2)K 0 0 1 0 Q96GX9 Q96GX9 Q96GX9 APIP Methylthioribulose-1-phosphate dehydratase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.374572753906 2 484.210247 966.405942 35811.164063952 2.3492 0.0011375 473270 229.16 473270 229.16 713.373074118248 45.793 0.76239 45.793 45.495 46.258 0 49 25 2 0.991428743111927 0.00188468449422527 0.0139567876600507 4.2352E-06 1 10509 158.3 102.26 3 86997000 16766 59735 17449 57700 30140 15147 28875 37033 61483 6618.7 15868 56418 17683 58685 29850 17368 30346 36498 59282 7089.4 1 1 1 1 1 1 1 1 1 1 801 1687 707 751 885 885 3102 DISGPSPSKK 10 Phospho (STY) _DISGPS(ph)PSKK_ DISGPS(0.769)PS(0.23)KK DIS(-38.8)GPS(5.24)PS(-5.24)KK 0 0 1 1 Q96GX9 Q96GX9 Q96GX9 APIP Methylthioribulose-1-phosphate dehydratase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.004211425781 3 365.840911 1094.5009 40699.2398315724 1.049 0.00038375 626400 229.16 626400 229.16 595.004042111577 45.604 0.6101 45.604 45.351 45.961 0 69 20 4 0.995998481257144 0.0134937390169114 0.076632028836765 2.5752E-06 2 10516 141.54 79.248 3 139740000 35719 216250 36685 201100 82219 39083 79403 108130 240710 10694 33803 204200 37437 204800 80860 47292 85378 106110 230670 12572 2 2 2 2 2 2 2 2 2 2 802 1687 708 752 886;887 887 3102 DISPEKSELDLGEPGPPGVEPPPQLLDIQCK 31 Phospho (STY) _DIS(ph)PEKSELDLGEPGPPGVEPPPQLLDIQCK_ DIS(0.992)PEKS(0.008)ELDLGEPGPPGVEPPPQLLDIQCK DIS(20.97)PEKS(-20.97)ELDLGEPGPPGVEPPPQLLDIQCK 0 0 1 1 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1031.5439453125 4 859.416381 3433.63642 32730.5509682315 1.3912 0.0011956 199990 171.87 199990 171.87 1031.54240529259 99.379 0.22987 99.379 99.236 99.466 0 15 7 3 0.926235874833694 0.00245907504013421 0.13263905581683 3.9325E-12 1 23096 199.31 181.06 2 14430000 3763.6 3552.8 3463 3320.6 3163.4 3715.2 3370.2 4763.8 3634.9 69552 3560.2 3354.9 3501 3430 3231.1 3850.4 3427.8 6833.6 3575.4 65602 1 1 1 1 1 1 1 1 1 1 803 1204 709 753 888 888 2109 DISQNKR 7 Phospho (STY) _DIS(ph)QNKR_ DIS(1)QNKR DIS(46)QNKR 0 0 1 1 P08107;P34931 P08107 P08107 HSPA1A;HSPA1L Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 466.922180175781 3 314.146446 939.41751 45315.0771397042 0.81105 0.00025479 486320 152.78 486320 152.78 466.921971840865 30.996 0.45175 30.996 30.787 31.239 0 37 14 4 0.818987726996484 0.00367588322805525 0.0741269019766354 0.041964 1 6919 46.001 9.308 1 20665000 13952 46202 12853 46449 13036 14191 13736 25006 44836 2100.8 13198 43647 13009 47159 13258 15804 14801 24727 42921 2556.9 1 1 1 1 1 1 1 1 1 1 804 328 710 754 889 889 535 DITDPLSLNTCTDEGHVVLASPLK 24 Phospho (STY) _DITDPLSLNTCTDEGHVVLAS(ph)PLK_ DITDPLSLNTCTDEGHVVLAS(1)PLK DIT(-147.86)DPLS(-125.84)LNT(-103.3)CT(-77.66)DEGHVVLAS(77.66)PLK 0 0 1 0 Q7L2J0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1045.20166015625 3 892.425981 2674.25611 30548.4441091336 1.4521 0.0012959 171190 152.78 171190 152.78 1045.53584229994 93.688 0.81072 93.688 93.301 94.111 0 110 27 7 0.867434050756568 0.00130192695307017 0.0428969081290237 9.9599E-13 1 21776 206.57 189.95 5 123080000 6466 7465.3 6386.5 8020 5700 6018.1 5538.8 7450.7 8240.6 30809 6118.2 7055.4 6426.7 8168.7 5825.2 6197.6 5719.8 8346.4 8016.4 29183 1 1 1 1 1 1 1 1 1 1 805 1317 711 755 890 890 2355 DITDPLSLNTCTDEGHVVLASPLK 24 Phospho (STY) _DITDPLSLNTCTDEGHVVLAS(ph)PLK_ DITDPLSLNT(0.011)CT(0.009)DEGHVVLAS(0.98)PLK DIT(-63.1)DPLS(-43.95)LNT(-19.47)CT(-20.61)DEGHVVLAS(19.47)PLK 0 0 1 0 Q7L2J0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.6552734375 4 669.571305 2674.25611 35107.5474681761 1.6816 0.001126 171130 114.58 171130 114.58 784.403902336143 93.702 0.69286 93.702 93.418 94.111 1.4211E-14 95 23 6 0.884140667762256 0.00163271668065903 0.0440151203835615 0.0099761 1 21877 72.728 53.006 5 68150000 3685.1 4576.9 4450 5082.2 4174.4 4314.1 4280.6 4663 4462.3 26431 3489.9 4326.5 4433.8 5175 4254.1 4412.7 4357.2 5460.2 4395.3 24996 1 1 1 1 1 1 1 1 1 1 806 1317 711 755 891 891 2355 DITSDTSGDFR 11 Unmodified _DITSDTSGDFR_ 0 0 0 0 P04083 P04083 P04083 ANXA1 Annexin A1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.852355957031 2 607.270207 1212.52586 37350.056404965 2.0329 0.0012345 188680 114.58 188680 114.58 721.850850732886 49.142 0.45441 49.142 48.884 49.338 7.1054E-15 37 15 3 0.689498307489946 0.00141119068542535 0.0387251089445919 0.00022689 2 11389 129.85 96.807 1 16072000 24890 75061 25211 77098 42816 24935 43976 48239 86448 19664 23554 70919 25586 78199 42467 27651 45871 48077 83497 19632 2 2 2 2 2 2 2 2 2 2 807 290 712 756 892;893 893 DIYLSPDR 8 Phospho (STY) _DIYLS(ph)PDR_ DIYLS(1)PDR DIY(-73.28)LS(73.28)PDR 0 0 1 0 Q15696 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 644.314331054688 2 529.731347 1057.44814 38240.5013291805 1.9153 0.0010146 216300 114.58 216300 114.58 644.313184916297 61.924 0.6153 61.924 61.621 62.237 0 65 20 4 0.877522520750962 0.00293250053174857 0.0613333478906016 0.0004422 1 14553 128.81 103.25 2 47720000 22114 26717 20733 29668 16886 22355 18987 26682 29484 11369 20920 25256 20913 30164 17403 22809 19513 26939 28647 11323 1 1 1 1 1 1 1 1 1 1 808 1088 713 757 894 894 1889 DKDDDGGEDDDANCNLICGDEYGPETR 27 Unmodified _DKDDDGGEDDDANCNLICGDEYGPETR_ 0 0 0 1 Q08211 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1168.83459472656 3 1015.7246 3044.15198 29211.1328650984 1.3941 0.0014161 150410 152.77 150410 152.78 1168.83367058336 57.731 0.57401 57.731 57.449 58.023 -7.1054E-15 93 19 7 0.981100355993079 0.00576424079813846 0.211677650552336 9.8467E-55 1 13483 383.22 367.98 1 49743000 8135.6 9278.7 8706.8 8422.5 6865.2 9532.9 9192.2 9515.7 9630.4 3604.4 7700.5 8760.4 8716.3 8718 7108.9 9512.3 9257.1 9654.2 9483.8 3614.2 1 1 1 1 1 1 1 1 1 1 809 887 714 758 895 895 DKEISPSVTK 10 Phospho (STY) _DKEIS(ph)PSVTK_ DKEIS(0.66)PS(0.232)VT(0.108)K DKEIS(4.54)PS(-4.54)VT(-7.88)K 0 0 1 1 Q8N488 Q8N488 Q8N488 RYBP RING1 and YY1-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.355712890625 3 395.191721 1182.55333 39777.8050949887 2.4696 0.00097597 579880 229.16 579880 229.16 624.688325415547 51.087 0.43281 51.087 50.879 51.312 0 41 14 4 0.598040927970008 0.00143788947082404 0.016175085821294 0.039726 1 11889 42.314 21.933 3 11196000 13613 15295 14563 14893 11349 15855 13262 15304 14563 3894.7 12885 14447 14574 15332 11735 15849 13444 15489 14314 4021.5 1 1 1 1 1 1 1 1 1 1 810 1467 715 759 896 896 2714 DKEPFTFSSPASGR 14 Phospho (STY) _DKEPFTFSS(ph)PASGR_ DKEPFT(0.069)FS(0.296)S(0.634)PAS(0.001)GR DKEPFT(-9.66)FS(-3.31)S(3.31)PAS(-26.72)GR 0 0 1 1 Q6P1X5 Q6P1X5 Q6P1X5 TAF2 Transcription initiation factor TFIID subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.012451171875 3 535.90301 1604.6872 37264.4443654503 1.4703 0.00078792 285080 152.78 285080 152.78 688.678190728252 65.615 0.7636 65.615 65.256 66.019 0 64 25 3 0.983717808163394 0.00258474057059242 0.0353914506074214 0.022592 1 15388 57.86 25.126 4 17928000 9091.5 8918.4 8923.2 8327.9 10753 9514.5 11337 10264 10579 4917.3 8602.3 8421.6 9018.4 8605.9 10811 9502.5 11491 10415 10470 4867.8 1 1 1 1 1 1 1 1 1 1 811 1257 716 760 897 897 2229 DKEVSDDEAEEK 12 Phospho (STY) _DKEVS(ph)DDEAEEK_ DKEVS(1)DDEAEEK DKEVS(144.66)DDEAEEK 0 0 1 1 P07900 P07900 P07900 HSP90AA1 Heat shock protein HSP 90-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.355773925781 3 491.859136 1472.55558 37126.6527733327 2.2049 0.0010845 465910 229.16 465910 229.16 721.356236330137 40.943 2.1672 40.943 40.658 42.825 0 164 75 4 0.987428859100517 0.00402557975102332 0.0155544422667025 3.3414E-07 1 9320 144.66 95.834 1 45290000 33364 39812 40361 43087 26677 33159 23730 37283 47763 9334.8 31597 37628 40066 43881 27861 33749 24955 37519 46108 9652.7 1 1 1 1 1 1 1 1 1 1 812 323 717 761 898 898 529 DKFSPFPVQDRPESSLVFK 19 Phospho (STY) _DKFS(ph)PFPVQDRPESSLVFK_ DKFS(1)PFPVQDRPESSLVFK DKFS(83.56)PFPVQDRPES(-85.37)S(-83.56)LVFK 0 0 1 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.658386230469 4 576.533151 2302.1035 37013.9617774625 1.8205 0.0010496 298110 171.87 298120 171.87 748.657604395355 89.106 0.83873 89.106 88.68 89.519 0 90 28 5 0.910279676247254 0.00349999625599936 0.040220699614382 1.5643E-07 1 20762 148.04 127.84 3 15042000 8472.6 11564 9929.2 11627 5399.7 10632 5976.1 9427 10627 13125 8022.7 10925 9860 11918 5759.6 10711 6182.8 9898.1 10288 12577 1 1 1 1 1 1 1 1 1 1 813 2226 718 762 899 899 4037 DKQDEEQR 8 Unmodified _DKQDEEQR_ 0 0 0 1 P27797 P27797 P27797 CALR Calreticulin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 502.603363037109 3 349.828232 1046.46287 44247.6066729715 1.3544 0.00047381 436710 152.78 436720 152.78 502.602970322013 23.111 0.43265 23.111 22.891 23.324 -3.5527E-15 32 14 4 0.800108848307191 0.00898992689742094 0.25557239088661 0.016844 1 5196 83.869 57.354 1 10773000 11728 7299.6 12734 7338 10797 14218 10096 10040 7673.8 5862.7 11101 6895.9 12740 7642.7 11059 13903 10244 10410 7674.4 5752.8 1 1 1 1 1 1 1 1 1 1 814 490 719 763 900 900 DKRPLSGPDVGTPQPAGLASGAK 23 Phospho (STY) _DKRPLS(ph)GPDVGTPQPAGLASGAK_ DKRPLS(1)GPDVGTPQPAGLASGAK DKRPLS(39.82)GPDVGT(-39.82)PQPAGLAS(-160.64)GAK 0 0 1 2 O96013 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.665832519531 4 575.541508 2298.13692 36240.5647064062 1.8678 0.001075 298630 171.87 298630 171.87 747.664386366028 60.888 0.49904 60.888 60.656 61.155 0 71 16 5 0.976826503274289 0.00368289833460572 0.0527284821974657 3.1505E-12 1 14318 180.23 157.06 3 94976000 8755.8 21437 8396.1 21401 13733 9410.1 11869 14436 25752 9396.2 8283.8 20250 8536.9 21784 13608 10048 12552 14569 24821 9181.7 1 1 1 1 1 1 1 1 1 1 815 274 720 764 901 901 457 DKSPSSLLEDAK 12 Phospho (STY) _DKS(ph)PSSLLEDAK_ DKS(0.913)PS(0.086)S(0.001)LLEDAK DKS(10.27)PS(-10.27)S(-30.59)LLEDAK 0 0 1 1 P42684 P42684 P42684 ABL2 Abelson tyrosine-protein kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.711059570313 3 457.213074 1368.61739 37845.3292318747 2.0432 0.00093418 501220 229.16 501220 229.17 686.376761900057 73.221 0.89257 73.221 72.663 73.556 0 68 30 3 0.981080143595302 0.00120707392129158 0.0340184639757864 0.0001104 1 17161 111.33 65.995 3 21667000 9172.4 15177 9735.9 13338 13737 9528.9 15371 12931 16408 9841.4 8681.6 14326 9823.2 13746 13728 9782.5 15596 13136 16146 9566.1 1 1 1 1 1 1 1 1 1 1 816 590 721 765 902 902 955 DKSPVREPIDNLTPEER 17 Phospho (STY) _DKS(ph)PVREPIDNLTPEER_ DKS(1)PVREPIDNLTPEER DKS(91.89)PVREPIDNLT(-91.89)PEER 0 0 1 2 Q14498 Q14498 Q14498 RBM39 RNA-binding protein 39 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.442504882813 3 692.331681 2073.97321 34095.0336506317 1.5218 0.0010536 220670 152.78 220670 152.78 845.441269946455 55.963 1.3026 55.963 55.594 56.897 0 167 43 6 0.99062688082593 0.0055856495001708 0.10617944205508 1.0107E-10 1 13016 194.04 172.75 2 494490000 22081 25270 24880 27690 24541 24387 26412 28654 27924 25297 20905 23886 24892 28231 24953 24693 26837 29339 27488 24483 1 1 1 1 1 1 1 1 1 1 817 1009 722 766 903 903 1712 DKVEENSVRSPR 12 Phospho (STY) _DKVEENSVRS(ph)PR_ DKVEENS(0.001)VRS(0.999)PR DKVEENS(-30.6)VRS(30.6)PR 0 0 1 2 Q92576 Q92576 Q92576 PHF3 PHD finger protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.011169433594 3 499.234872 1494.68279 38033.3638697452 2.1692 0.0010829 306020 152.77 306020 152.78 652.010063994122 30.836 0.71857 30.836 30.551 31.269 3.5527E-15 72 23 4 0.952804374832337 0.00523276209348683 0.152738804117048 0.00020358 1 6870 107.63 85.095 2 61029000 26340 15372 21702 17450 12715 24644 12483 17605 18136 3271.8 24907 14534 22009 17906 13436 24299 12872 18030 17655 3488.2 1 1 1 1 1 1 1 1 1 1 818 1602 723 767 904 904 2941 DLADELALVDVIEDK 15 Unmodified _DLADELALVDVIEDK_ 0 0 0 0 P00338 P00338 P00338 LDHA L-lactate dehydrogenase A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.399230957031 3 553.289209 1656.8458 37347.6631179199 1.3011 0.00071991 276120 152.77 276120 152.78 706.398415382007 101.7 0.19975 101.7 101.64 101.84 0 21 6 6 0.976043960971353 0.028185649902744 0.600772309643872 8.8547E-11 1 23929 198.23 153.77 1 162970000 108860 113180 122620 111290 122490 122750 105780 121520 135790 34310 103060 106910 122640 114570 124100 122580 109300 122980 132710 35119 1 1 1 1 1 1 1 1 1 1 819 277 724 768 905 905 DLAVPAALTPR 11 Phospho (STY) _DLAVPAALT(ph)PR_ DLAVPAALT(1)PR DLAVPAALT(101.43)PR 0 0 1 0 Q8TEM1 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.892578125 2 602.310296 1202.60604 36569.4021570494 2.1105 0.0012712 190230 114.58 190240 114.58 716.889824820699 73.751 0.97351 73.751 73.356 74.33 0 113 33 5 0.839931143973193 0.00879719149444845 0.300405036205942 0.00036714 1 17288 101.43 64.237 1 198780000 37603 74552 35920 63958 27244 37199 33179 46202 73927 9100.4 35576 70366 36171 65887 28282 38611 34604 46269 71216 9638.4 1 1 1 1 1 1 1 1 1 1 820 1553 725 769 906 906 4702 DLDAPDDVDFF 11 Unmodified _DLDAPDDVDFF_ 0 0 0 0 Q9BXP5 Q9BXP5 Q9BXP5 SRRT Serrate RNA effector molecule homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.350952148438 2 634.769508 1267.52446 36235.6508237355 1.5623 0.00099167 180510 114.58 180510 114.58 749.350947172521 100.91 0.20061 100.91 100.81 101.01 0 20 6 4 0.981654018176486 0.00521649094796863 0.0977419968312743 2.0682E-09 1 23655 176.4 164.91 1 87314000 16986 15368 14767 15493 16439 17161 16950 18927 17588 27074 16065 14519 15019 15927 16591 17200 17247 19732 17327 25932 1 1 1 1 1 1 1 1 1 1 821 1865 726 770 907 907 DLDEEGSEK 9 Phospho (STY) _DLDEEGS(ph)EK_ DLDEEGS(1)EK DLDEEGS(90.43)EK 0 0 1 0 O43719 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.372802734375 2 551.202816 1100.39108 34450.0599328892 1.8552 0.0010226 415750 229.16 415750 229.16 780.364645590121 44.401 1.1281 44.401 43.994 45.122 0 73 38 3 0.623962511111659 0.000964038166316598 0.0170434266904391 0.0061187 2 10180 90.434 68.864 1 21161000 70121 74066 76422 71204 67696 76063 64684 78439 78064 49201 66376 69951 76478 73363 69184 76148 66354 80071 76459 48144 2 2 2 2 2 2 2 2 2 2 822 124 727 771 908;909 908 211 DLDELSRYPEDK 12 Unmodified _DLDELSRYPEDK_ 0 0 0 1 P43243 P43243 P43243 MATR3 Matrin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.679382324219 3 493.903577 1478.6889 38380.6860075505 1.8311 0.00090437 309330 152.78 309330 152.78 646.680433561276 65.158 0.60613 65.158 64.908 65.515 0 67 20 4 0.754321704032902 0.00260971616092399 0.0964045368102162 0.030281 1 15323 65.092 24.503 1 19115000 11678 14768 14662 14263 13682 15396 15875 14713 15656 6271.9 11062 13948 14585 14694 13974 15384 16048 14973 15457 6246.2 1 1 1 1 1 1 1 1 1 1 823 595 728 772 910 910 DLDLLASVPSPSSSGSR 17 Phospho (STY) _DLDLLASVPS(ph)PSSSGSR_ DLDLLASVPS(0.949)PS(0.04)S(0.009)S(0.002)GSR DLDLLAS(-37.63)VPS(13.7)PS(-13.7)S(-20.43)S(-27.07)GS(-33.6)R 0 0 1 0 Q8WU79 Q8WU79 Q8WU79 SMAP2 Stromal membrane-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.332824707031 3 589.943534 1766.80877 38110.5030331878 1.7614 0.0010391 129480 76.387 129480 76.388 666.331118782771 88.493 0.94529 88.493 88.109 89.055 0 98 32 4 0.878766703495959 0.00427529869876231 0.0950058754667905 9.695E-05 1 20603 102.08 86.513 6 32258000 3966.9 5943.1 4919.8 5582.2 4550.9 3360.3 4957 5922.9 6200.6 8248.8 3757.2 5612.2 4895.4 5717.9 4646.9 3515.1 5060.3 6090.3 6065.4 7904.3 1 1 1 1 1 1 1 1 1 1 824 1560 729 773 911 911 2869 DLDRPESQSPK 11 Phospho (STY) _DLDRPESQS(ph)PK_ DLDRPES(0.133)QS(0.867)PK DLDRPES(-8.12)QS(8.12)PK 0 0 1 1 Q8WUA4 Q8WUA4 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.977722167969 3 451.201168 1350.58167 41490.2053213467 1.5969 0.00072053 338600 152.78 338600 152.78 603.977115763385 37.842 0.72752 37.842 37.597 38.325 0 64 24 4 0.723753704539385 0.0016827353393976 0.0229488259771921 0.019647 1 8552 58.164 37.222 2 24888000 20358 18594 21433 20137 21334 19556 18891 22415 20505 2966.5 19268 17574 21514 20572 21622 19669 19391 22463 20164 3312.1 1 1 1 1 1 1 1 1 1 1 825 1562 730 774 912 912 2872 DLEAEHVEVEDTTLNR 16 Unmodified _DLEAEHVEVEDTTLNR_ 0 0 0 0 Q9H3K6 Q9H3K6 Q9H3K6 BOLA2 BolA-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.689208984375 3 623.965676 1868.8752 36762.9100496372 1.5368 0.00095889 122420 76.388 122420 76.389 700.6872109699 57.155 0.40596 57.155 56.928 57.334 0 42 13 4 0.86565018680326 0.00350364052272303 0.0474680880885284 2.2154E-05 1 13373 133.25 96.267 1 22143000 11905 13115 11785 13617 11922 12788 12684 13716 13656 7996.4 11265 12392 11877 13938 12102 12882 12901 13963 13433 7847 1 1 1 1 1 1 1 1 1 1 826 1930 731 775 913 913 DLEEELPGEELS 12 Unmodified _DLEEELPGEELS_ 0 0 0 0 Q8IVH2 Q8IVH2 Q8IVH2 FOXP4 Forkhead box protein P4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.893981933594 2 680.311737 1358.60892 35245.7111755029 1.6529 0.0011245 168420 114.58 168420 114.58 795.392420710229 80.975 0.38194 80.975 80.695 81.077 0 17 12 2 0.976764416497849 0.000372547377554205 0.0113108347187352 0.019713 1 18957 90.601 73.275 1 7529700 7993.1 7655.1 7231.6 8653.8 6364 8333.7 7011.7 7603.3 8576.2 19467 7560.6 7237.2 7316.2 8819.4 6520 8395.1 7149.1 8241.5 8395.8 18506 1 1 1 1 1 1 1 1 1 1 827 1411 732 776 914 914 DLFDPIIEDR 10 Unmodified _DLFDPIIEDR_ 0 0 0 0 P12277 P12277 P12277 CKB Creatine kinase B-type MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.394348144531 2 616.81151 1231.60847 37309.647424546 1.7956 0.0011075 185760 114.58 185770 114.58 731.393150998842 90.856 0.37787 90.856 90.618 90.996 0 31 12 3 0.546321049977301 0.000731030696337442 0.0321477161957566 0.00057967 1 21180 123.88 77.887 1 9668100 6508.9 13500 6227.6 13198 13572 5120.8 12611 12740 14762 20879 6158 12752 6375.1 13440 13327 5628.2 12941 13113 14475 19954 1 1 1 1 1 1 1 1 1 1 828 371 733 777 915 915 DLFDYSPPLHK 11 Phospho (STY) _DLFDYS(ph)PPLHK_ DLFDYS(1)PPLHK DLFDY(-49.29)S(49.29)PPLHK 0 0 1 0 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.324829101563 3 471.214637 1410.62208 39720.8529982979 1.682 0.00079259 324210 152.77 324220 152.78 624.323692760811 87.221 1.2577 87.221 86.619 87.877 -1.4211E-14 133 42 4 0.990804538408906 0.00576373304533822 0.0413310174417339 0.00016481 1 20375 103.76 84.686 2 45192000 10817 10961 10875 11320 9062.2 12276 9762.9 12205 12361 5037.6 10236 10357 10926 11617 9315.7 12271 9975.3 12397 12087 5026 1 1 1 1 1 1 1 1 1 1 829 2072 734 778 916 916 3744 DLFEDELVPLFEK 13 Unmodified _DLFEDELVPLFEK_ 0 0 0 0 O60506 O60506 O60506 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.05029296875 3 531.93974 1592.79739 38796.1831703473 1.2869 0.00068457 287200 152.78 287210 152.78 685.04973227959 101.77 0.11227 101.77 101.7 101.82 0 10 3 4 0.783090784122685 0.00064170885380337 0.018326901346169 0.01301 1 23962 68.034 39.291 1 57298000 7545 5713.3 8363.4 8996.9 8310.9 9194.9 6723.7 10347 8133.6 28639 7142.5 5415.9 8370.8 9040.5 8415.9 9276 6959 11197 7965.6 27207 1 1 1 1 1 1 1 1 1 1 830 148 735 779 917 917 DLFSLDSEDPSPASPPLR 18 Phospho (STY) _DLFSLDSEDPSPAS(ph)PPLR_ DLFSLDSEDPS(0.001)PAS(0.999)PPLR DLFS(-102.39)LDS(-84.98)EDPS(-30.54)PAS(30.54)PPLR 0 0 1 0 Q9BTK6 Q9BTK6 Q9BTK6 PAGR1 PAXIP1-associated glutamate-rich protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 751.695678710938 3 674.973382 2021.89832 35221.4477441249 1.5087 0.0010183 113170 76.387 113170 76.388 751.694880714147 95.349 1.2017 95.349 94.914 96.116 1.4211E-14 136 41 4 0.965765454293205 0.00161533785006141 0.0163864554278314 1.0426E-05 1 22137 133.21 112.77 4 36624000 3880.3 4878.5 4406.2 4891.6 5453.2 5081.1 4759.2 5519.5 5256.4 12790 3673.7 4608.7 4418.1 5024.7 5462.8 5114.1 4891.4 5904.8 5165.4 12171 1 1 1 1 1 1 1 1 1 1 831 1824 736 780 918 918 3342 DLGSHDNLSPPFVNSR 16 Phospho (STY) _DLGSHDNLS(ph)PPFVNSR_ DLGSHDNLS(1)PPFVNSR DLGS(-51.5)HDNLS(50.73)PPFVNS(-50.73)R 0 0 1 0 P15884 P15884 P15884 TCF4 Transcription factor 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.999328613281 3 612.275507 1833.80469 36830.5126682134 2.2472 0.0013759 124760 76.388 124760 76.39 688.997576555284 68.398 0.75739 68.398 68.005 68.763 0 63 25 3 0.874219836515549 0.00200480985887129 0.0319861971102992 0.0028561 1 16077 93.849 65.998 3 9801500 5437.2 6646.2 4187.4 6658.7 7733.8 6088.1 7030.6 5963.1 6654.7 5786.4 5140.3 6278.5 4330.4 6827 7628.6 6137.2 7180 6160.7 6582.1 5586.6 1 1 1 1 1 1 1 1 1 1 832 397 737 781 919 919 631 DLIHDQDEDEEEEEGQR 17 Unmodified _DLIHDQDEDEEEEEGQR_ 0 0 0 0 Q9UNZ2 Q9UNZ2 Q9UNZ2 NSFL1C NSFL1 cofactor p47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.677124023438 3 695.954165 2084.84066 34957.3944113418 1.8949 0.0013187 109760 76.388 109760 76.39 772.675887805781 41.761 0.91263 41.761 41.311 42.223 -7.1054E-15 87 31 4 0.982908720788256 0.0031090858286191 0.0185375817625647 1.6755E-31 1 9513 310.49 282.28 1 39551000 8946.9 11981 9446.5 12245 13273 11321 13540 14212 13370 6065.6 8467.9 11319 9530.7 12541 13247 11436 13765 14326 13199 6040.4 1 1 1 1 1 1 1 1 1 1 833 2210 738 782 920 920 DLLHPSPEEEK 11 Phospho (STY) _DLLHPS(ph)PEEEK_ DLLHPS(1)PEEEK DLLHPS(173.71)PEEEK 0 0 1 0 P42677 P42677 P42677 RPS27 40S ribosomal protein S27 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 611.312072753906 3 458.537669 1372.59118 39153.1401478812 1.3911 0.00063788 333180 152.78 333180 152.78 611.312766076982 59.723 0.94226 59.723 59.456 60.398 0 117 32 6 0.977035869576022 0.00349019803967224 0.0910818320116014 5.2471E-08 1 13961 173.71 123.51 1 40201000 13228 13064 13028 13061 7530.7 13186 7638.1 11135 13555 2422.1 12516 12341 13063 13412 7973.9 13190 7931.8 11322 13124 2538.4 1 1 1 1 1 1 1 1 1 1 834 588 739 783 921 921 952 DLLPSGSRDEPPPASQSTSQDCSQALKQSP 30 Phospho (STY) _DLLPSGSRDEPPPASQSTSQDCSQALKQS(ph)P_ DLLPSGSRDEPPPASQSTSQDCSQALKQS(1)P DLLPS(-160.68)GS(-160.68)RDEPPPAS(-132.62)QS(-115.78)T(-106.53)S(-97.82)QDCS(-62.89)QALKQS(62.89)P 0 0 1 2 Q5JRA6 Q5JRA6 Q5JRA6 MIA3 Melanoma inhibitory activity protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 931.198913574219 4 816.618509 3262.44493 32443.1768017629 1.8189 0.0014854 140310 114.58 140310 114.58 931.701513389941 62.046 0.78217 62.046 61.65 62.433 7.1054E-15 85 26 5 0.938721986727075 0.00110515214319242 0.0282210717489443 7.4674E-12 1 14573 185.55 171.39 8 19019000 4339.5 5926.1 4777.3 5890.7 4372.5 4667.7 5037.3 6126.7 7243.7 23257 4107.9 5598 4781.6 6030.9 4472.6 4795.4 5156 6789.8 7053.7 22041 1 1 1 1 1 1 1 1 1 1 835 1166 740 784 922 922 2016 DLLSDLQDISDSER 14 Phospho (STY) _DLLSDLQDIS(ph)DSER_ DLLSDLQDIS(0.936)DS(0.064)ER DLLS(-97.89)DLQDIS(11.68)DS(-11.68)ER 0 0 1 0 P21127;Q9UQ88 P21127 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 639.303283691406 3 562.580373 1684.71929 40673.0718601972 1.7415 0.00097974 135780 76.387 135780 76.388 638.96722041575 91.987 1.5223 91.987 91.568 93.09 0 88 52 3 0.954111217167064 0.00111105192976728 0.0257130093550204 8.5772E-05 1 21388 121.72 99.524 3 6739200 2340.2 2811.3 2324 3213.7 3177.6 2377 2832.7 2767 3012.9 7861.5 2214.4 2658 2350.9 3261.7 3169.6 2439.7 2905 2997.3 2965.2 7466.6 1 1 1 1 1 1 1 1 1 1 836 449 741 785 923 923 727 DLLVSSGSNNSLPCGSPK 18 Phospho (STY) _DLLVSSGSNNSLPCGS(ph)PK_ DLLVSSGSNNSLPCGS(1)PK DLLVS(-96.47)S(-90.13)GS(-76.63)NNS(-50.44)LPCGS(50.44)PK 0 0 1 0 Q5THK1 Q5THK1 Q5THK1 PRR14L Protein PRR14L MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.732177734375 3 637.955446 1910.84451 35010.0421096944 1.9645 0.0012532 239480 152.78 239480 152.78 791.065246508093 73.118 0.60646 73.118 72.778 73.384 0 64 20 5 0.974361374985306 0.000952837732280993 0.0190632304871333 1.9178E-07 1 17143 147.93 129.4 5 15076000 7635.2 5660.8 8245.6 5790.2 10493 8475.8 10835 9361.5 6739 13882 7227.2 5348.3 8295.9 5980.5 10516 8413.1 10901 9774.2 6823.1 13288 1 1 1 1 1 1 1 1 1 1 837 1194 742 786 924 924 2087 DLPSPDSR 8 Phospho (STY) _DLPS(ph)PDSR_ DLPS(1)PDSR DLPS(34.18)PDS(-34.18)R 0 0 1 0 Q9UGU0 Q9UGU0 Q9UGU0 TCF20 Transcription factor 20 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.282592773438 2 483.700047 965.385541 NaN NaN NaN NaN NaN NaN NaN NaN 41.588 1 41.588 41.088 42.088 0 NaN NaN NaN 9.3903E-05 1 9488 135.72 55.042 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 838 2140 743 787 925 925 3851 DLQSPDFTTGFHSDKIEAK 19 Phospho (STY) _DLQS(ph)PDFTTGFHSDKIEAK_ DLQS(0.996)PDFT(0.004)TGFHSDKIEAK DLQS(24.5)PDFT(-24.5)T(-37.17)GFHS(-72.46)DKIEAK 0 0 1 1 Q9P2D0 Q9P2D0 Q9P2D0 IBTK Inhibitor of Bruton tyrosine kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.127197265625 4 554.753137 2214.98344 37306.4140360227 2.0322 0.0011274 309820 171.87 309820 171.87 726.875242334613 73.628 0.62634 73.628 73.328 73.955 0 71 21 5 0.90090587637563 0.00241749989280633 0.0514549343561903 4.6751E-05 1 17300 118.52 101.3 4 24824000 10127 9165.8 11142 11137 6785.3 11414 7986.6 10376 10133 29127 9586.8 8669.8 11110 11320 7162 11470 8130.8 11326 9907.3 27666 1 1 1 1 1 1 1 1 1 1 839 2106 744 788 926 926 3804 DLSLDDFK 8 Unmodified _DLSLDDFK_ 0 0 0 0 P30048 P30048 P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.900573730469 2 476.73474 951.454927 38059.1226498955 1.9944 0.00095081 480690 229.16 480690 229.16 705.89771915302 84.318 0.50675 84.318 84.072 84.579 0 39 17 3 0.986724315013664 0.00112200780943823 0.0176931645228108 0.0015974 1 19694 127.46 73.053 1 15257000 34049 14176 35044 12753 12543 31738 14333 20789 15651 12105 32222 13384 34958 13486 14084 30851 14540 21642 15387 11879 1 1 1 1 1 1 1 1 1 1 840 507 745 789 927 927 DLSLEEIQK 9 Phospho (STY) _DLS(ph)LEEIQK_ DLS(1)LEEIQK DLS(98.41)LEEIQK 0 0 1 0 P16949;Q93045 P16949 P16949 STMN1;STMN2 Stathmin;Stathmin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.934143066406 2 577.770669 1153.52679 36601.0941509389 1.8546 0.0010715 396630 229.16 396640 229.16 806.934084032836 75.784 0.61329 75.784 75.572 76.185 0 50 20 3 0.566079939490515 0.000854040522038246 0.0242116109661363 0.0021509 1 17822 98.407 57.244 1 18310000 9133 17027 9780 15857 14997 10199 14273 15632 17139 28165 8644.5 16078 9873.2 16262 14903 10597 14642 16318 16789 26882 1 1 1 1 1 1 1 1 1 1 841 411 746 790 928 928 662 DLSSSPPGPYGQEMYAFR 18 Phospho (STY) _DLSS(ph)SPPGPYGQEMYAFR_ DLS(0.083)S(0.459)S(0.459)PPGPYGQEMYAFR DLS(-7.42)S(0)S(0)PPGPY(-54.65)GQEMY(-79.83)AFR 0 0 1 0 O43741 O43741 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.351135253906 3 694.627329 2080.86016 37269.8812896303 1.5526 0.0010785 109970 76.389 109970 76.39 771.350198507815 85.459 0.5736 85.459 85.185 85.758 0 48 19 3 0.495163616622289 0.00117624595907481 0.00834902206973356 0.0042915 1 19968 89.831 84.653 5 7068500 6703.4 5445.7 6075.4 5325.3 7869.3 6294.4 7295 8376.7 4874.6 30710 6340.8 5143.7 6174.5 5490.8 7869.5 6349.9 7387 9247.1 4912.4 29111 1 1 1 1 1 1 1 1 1 1 842 125 747 791 929 929 215;216 DLSTSPKPSPIPSPVLGR 18 Phospho (STY) _DLSTS(ph)PKPSPIPSPVLGR_ DLS(0.058)T(0.233)S(0.709)PKPSPIPSPVLGR DLS(-10.89)T(-4.84)S(4.84)PKPS(-33.97)PIPS(-59.91)PVLGR 0 0 1 1 Q8NDI1 Q8NDI1 Q8NDI1 EHBP1 EH domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.44580078125 3 643.334474 1926.98159 35749.814539624 1.8588 0.0011958 237470 152.78 237480 152.78 796.444151913024 75.647 0.46202 75.647 75.341 75.803 0 47 15 4 0.936543235724198 0.0029513959996768 0.112263089737717 0.0053568 1 17727 86.761 67.725 5 11770000 6686.5 7774.6 6985.2 7384.7 14554 6626.8 15905 10967 8364.3 14363 6328.2 7342.2 7111.7 7594 14334 6757.7 15918 11265 8572.9 13778 1 1 1 1 1 1 1 1 1 1 843 1507 748 792 930 930 2766 DLTDYLMK 8 Unmodified _DLTDYLMK_ 0 0 0 0 P60709;Q562R1;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 P63261 ACTB;ACTBL2;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.910400390625 2 499.746793 997.479033 38463.9167924785 2.3065 0.0011527 458560 229.16 458560 229.16 728.908534141126 88.533 0.39684 88.533 88.338 88.735 -1.4211E-14 33 13 3 0.798897385678226 0.00100240322363434 0.056600323155923 0.0045014 1 20668 105.57 61.365 1 6813900 14700 9654.7 15076 10698 17746 17574 17736 14811 11573 11983 13911 9126.4 15192 11031 17845 17296 17886 15325 11681 11626 1 1 1 1 1 1 1 1 1 1 844 742;783;766 749 793 931 931 DLVLPTQALPASPALK 16 Phospho (STY) _DLVLPTQALPAS(ph)PALK_ DLVLPT(0.001)QALPAS(0.999)PALK DLVLPT(-31.88)QALPAS(31.88)PALK 0 0 1 0 Q15554 Q15554 Q15554 TERF2 Telomeric repeat-binding factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.088806152344 3 571.977739 1712.91139 36854.6697991374 1.9964 0.0011419 267100 152.78 267100 152.78 725.087328500744 97.886 0.69638 97.886 97.56 98.256 0 101 23 6 0.902910304091279 0.00551381126489908 0.0487786457365108 0.0080174 1 22694 79.635 56.306 2 95526000 7082 8475.9 8520 7728.3 7835.2 9427.1 7430.7 7637.8 8020 7688.6 6706.8 8002.6 8487.4 8008.1 7986.5 9365.5 7599.4 7962.3 7888.3 7416.5 1 1 1 1 1 1 1 1 1 1 845 1079 750 794 932 932 1870 DLVPRPDSPAQQLK 14 Phospho (STY) _DLVPRPDS(ph)PAQQLK_ DLVPRPDS(1)PAQQLK DLVPRPDS(127.17)PAQQLK 0 0 1 1 P78414 P78414 P78414 IRX1 Iroquois-class homeodomain protein IRX-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.720336914063 3 548.609938 1642.80799 36747.119354581 2.1264 0.0011666 278480 152.77 278480 152.78 701.385188699701 63.948 0.69111 63.948 63.549 64.24 0 64 23 3 0.954629269484594 0.00132202993375516 0.0309561532146088 5.7847E-05 1 15052 127.17 85.796 1 18518000 7036.2 6307.3 6524.8 7407.4 23536 6954 26938 12939 6874.3 6698.6 6656.1 5964.5 6814.2 7531.3 22909 7078.2 26708 12949 7633.8 6607 1 1 1 1 1 1 1 1 1 1 846 802 751 795 933 933 1281 DLVQPDKPASPK 12 Phospho (STY) _DLVQPDKPAS(ph)PK_ DLVQPDKPAS(1)PK DLVQPDKPAS(129.32)PK 0 0 1 1 Q6PJT7 Q6PJT7 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.058410644531 3 458.893675 1373.6592 37146.7738831633 1.4933 0.00068527 499380 229.16 499380 229.16 688.057106605981 54.912 0.81108 54.912 54.582 55.393 -7.1054E-15 88 27 5 0.970333219936839 0.00411286109977823 0.0333020918260053 3.8058E-05 1 12767 129.32 98.321 1 180260000 36275 40929 35583 41690 32435 31082 33195 35854 44935 7589.5 34322 38669 35833 42589 33123 31702 34075 36007 43840 7976.2 1 1 1 1 1 1 1 1 1 1 847 1271 752 796 934 934 2251 DLWEYIED 8 Unmodified _DLWEYIED_ 0 0 0 0 Q9Y4X5 Q9Y4X5 Q9Y4X5 ARIH1 E3 ubiquitin-protein ligase ARIH1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.320007324219 2 541.73748 1081.46041 NaN NaN NaN NaN NaN NaN NaN NaN 101.05 1 101.05 100.55 101.55 0 NaN NaN NaN 0.051552 1 23702 45.718 26.987 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 848 2288 753 797 935 935 DLYANTVLSGGTTMYPGIADR 21 Unmodified _DLYANTVLSGGTTMYPGIADR_ 0 0 0 0 P60709;P63261 P60709;P63261 P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.746643066406 3 739.028171 2214.06268 36638.7922455031 1.5802 0.0011678 103360 76.385 103360 76.386 815.748218167601 89.131 0.43855 89.131 88.911 89.349 0 36 14 4 0.218443427128372 0.000198836760062289 0.00406679961166841 7.7414E-05 2 20826 101.6 82.525 1 7137000 14075 17871 13289 16879 11291 12790 11723 14399 17741 44326 13316 16876 13403 17326 11588 13106 12077 15717 17250 42072 2 2 2 2 2 2 2 2 2 2 849 742;783 754 798 936;937 937 DMDEPSPVPNVEEVTLPK 18 Phospho (STY) _DMDEPS(ph)PVPNVEEVTLPK_ DMDEPS(1)PVPNVEEVTLPK DMDEPS(82.45)PVPNVEEVT(-82.45)LPK 0 0 1 0 Q8TAQ2 Q8TAQ2 Q8TAQ2 SMARCC2 SWI/SNF complex subunit SMARCC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.760925292969 3 692.646278 2074.917 33580.7526942798 1.8047 0.00125 220570 152.78 220570 152.78 845.422456519813 87.469 0.70453 87.469 87.263 87.967 1.4211E-14 55 23 5 0.835137850181552 0.00391643378870733 0.049016366314499 4.4559E-05 1 20429 114.84 94.215 2 17870000 9703.5 11314 9676.1 14800 12344 8409.1 11533 13219 13016 66991 9181.9 10708 9776 14880 12359 8900.5 11819 15092 12780 63386 1 1 1 1 1 1 1 1 1 1 850 1534 755 799 938 938 2818 DMESPTK 7 Phospho (STY) _DMES(ph)PTK_ DMES(0.75)PT(0.25)K DMES(4.77)PT(-4.77)K 0 0 1 0 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.328063964844 2 444.164451 886.31435 38528.2586677848 2.4395 0.0010836 515940 229.16 515940 229.16 673.32738279002 41.535 0.54539 41.535 41.224 41.77 0 39 18 3 0.522557686714225 0.00123178898331907 0.0390094636990964 0.016675 1 9475 76.815 54.428 2 12932000 26189 34251 25726 34021 23200 25843 24297 30284 37797 8970.2 24780 32355 25902 34814 23721 26341 25050 30475 36722 9147.4 1 1 1 1 1 1 1 1 1 1 851 491 756 800 939 939 806 DMESPTKLDVTLAK 14 Oxidation (M),Phospho (STY) _DM(ox)ES(ph)PTKLDVTLAK_ DM(1)ESPTKLDVTLAK DMES(0.736)PT(0.264)KLDVTLAK DM(119.37)ESPTKLDVTLAK DMES(4.46)PT(-4.46)KLDVT(-34.99)LAK 0 1 1 1 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.089904785156 3 548.591445 1642.7525 34542.2515897018 2.2131 0.0012141 417730 229.16 417730 229.16 778.088379570009 72.219 0.71013 72.219 71.924 72.634 0 101 23 6 0.984274089365891 0.0177842081730971 0.137247374338443 0.00017241 1 16931 119.37 95.374 3 125780000 54311 85961 57819 93666 43795 58942 48226 68369 97899 41714 51405 81249 57855 95145 45381 60827 50238 69471 94490 40861 1 1 1 1 1 1 1 1 1 1 852 491 757 801 940 940 68 806 DMESPTKLDVTLAK 14 Phospho (STY) _DMES(ph)PTKLDVTLAK_ DMES(0.902)PT(0.098)KLDVTLAK DMES(9.63)PT(-9.63)KLDVT(-79.92)LAK 0 0 1 1 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.757507324219 3 543.259806 1626.75759 35347.5799410345 2.4739 0.001344 421830 229.16 421830 229.16 772.756431046905 79.029 1.1243 79.029 78.693 79.818 0 147 38 6 0.974472626495347 0.00206222614813389 0.0602618363423287 5.9292E-07 1 18612 150.7 123.05 3 217020000 10371 12989 10753 13304 8496.6 11708 9076.8 10960 16106 9867 9815.3 12272 10780 13615 8770.5 11816 9404 11320 15593 9544.6 1 1 1 1 1 1 1 1 1 1 853 491 757 802 941 941 806 DMSPLSETEMALGK 14 Phospho (STY) _DMS(ph)PLSETEMALGK_ DMS(0.981)PLS(0.019)ETEMALGK DMS(17.11)PLS(-17.11)ET(-89.49)EMALGK 0 0 1 0 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.00341796875 3 530.225997 1587.65616 38444.5891195449 2.0295 0.0010761 288130 152.78 288130 152.78 683.33525531417 98.584 0.57984 98.584 98.226 98.806 1.4211E-14 55 19 4 0.96642266705651 0.00167935036360647 0.0375644316895079 8.8707E-11 1 22887 197.17 173.72 3 11027000 5089 9672.3 4905.3 8239.3 5050.9 5567.3 6160.5 7085.8 9548.5 10624 4814.8 9128.9 4953.8 8504.4 5135.9 5738.7 6310.3 7368.8 9277.8 10168 1 1 1 1 1 1 1 1 1 1 854 491 758 803 942 942 807 DNEEETTDDPRK 12 Unmodified _DNEEETTDDPRK_ 0 0 0 1 Q99459 Q99459 Q99459 CDC5L Cell division cycle 5-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.317077636719 3 483.542708 1447.6063 40311.3220932757 2.3799 0.0011508 315950 152.77 315950 152.78 636.316621636051 28.352 0.3437 28.352 28.18 28.523 0 28 11 3 0.897920294360478 0.00123903828620982 0.015493166661318 0.017022 1 6331 69.314 47.083 1 5942900 7846.3 8242.2 7446.5 7096.7 6734.7 7917.5 6146.8 6824.7 6815.1 3004.3 7423.1 7779.6 7511.4 7369.8 6868.7 7891.5 6303.4 6978.6 6696.1 2986.8 1 1 1 1 1 1 1 1 1 1 855 1765 759 804 943 943 DNIQGITKPAIR 12 Unmodified _DNIQGITKPAIR_ 0 0 0 1 P62805 P62805 P62805 HIST1H4A Histone H4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.699584960938 3 442.589376 1324.7463 40889.2821324505 1.5335 0.00067871 345190 152.78 345190 152.78 595.365341450766 58.198 0.44054 58.198 57.963 58.404 7.1054E-15 47 14 4 0.973736823925988 0.00409933287228092 0.0370373997821112 8.6027E-07 1 13626 144.27 86.917 1 36633000 22089 18466 24498 23007 22639 23829 20740 21608 24509 5449.4 20911 17470 24503 23359 23061 23831 21306 21925 24023 5631.3 1 1 1 1 1 1 1 1 1 1 856 769 760 805 944 944 DNLTLWTSDMQGDGEEQNK 19 Unmodified _DNLTLWTSDMQGDGEEQNK_ 0 0 0 0 P62258 P62258 P62258 YWHAE 14-3-3 protein epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.432983398438 3 727.65154 2179.93279 34000.7286521406 1.8201 0.0013244 209960 152.78 209960 152.78 880.431098775149 83.192 0.49713 83.192 82.885 83.382 -1.4211E-14 43 16 4 0.697823407785561 0.00182029089394217 0.014306081425862 1.783E-11 1 19445 204.63 188.32 1 12137000 7680.9 7719.4 6938.9 5631.9 6326.9 6971.1 6626.2 8250.5 7845.6 12728 7265.3 7280.4 7022.8 5931.6 6462.1 6967.8 6763.9 8609.8 7689.6 12175 1 1 1 1 1 1 1 1 1 1 857 758 761 806 945 945 DNLTLWTSDMQGDGEEQNKEALQDVEDENQ 30 Oxidation (M) _DNLTLWTSDM(ox)QGDGEEQNKEALQDVEDENQ_ DNLTLWTSDM(1)QGDGEEQNKEALQDVEDENQ DNLTLWTSDM(261.94)QGDGEEQNKEALQDVEDENQ 0 1 0 1 P62258 P62258 P62258 YWHAE 14-3-3 protein epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1309.60485839844 3 1156.49362 3466.45905 27213.1482387877 1.6882 0.0019524 132100 152.77 132100 152.78 1309.93702882406 83.575 0.51696 83.575 83.353 83.87 0 73 17 6 0.980404976316797 0.00391896451355062 0.156213627586066 2.0794E-25 1 19524 261.94 250.77 1 25647000 4184.4 4538.9 4616.5 5331.4 3624.2 5170.8 3639 5146.1 5163.1 12643 3961.2 4292.2 4611.6 5423.1 3738.1 5213.7 3745.2 5543.9 5029.8 12024 1 1 1 1 1 1 1 1 1 1 858 758 762 807 946 946 100 DNLTLWTSDMQGDGEEQNKEALQDVEDENQ 30 Unmodified _DNLTLWTSDMQGDGEEQNKEALQDVEDENQ_ 0 0 0 1 P62258 P62258 P62258 YWHAE 14-3-3 protein epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 978.455627441406 4 863.623309 3450.46413 31822.9470666207 1.689 0.0014587 132680 114.58 132680 114.58 978.70659840932 90.538 0.7155 90.538 90.192 90.907 0 146 24 8 0.752384182273259 0.00239875310652169 0.0924338473266998 0.012964 1 21039 63.625 47.519 1 220530000 5358 5567 6045 6189 5717.5 4745.6 4946.2 7211.4 7087.8 25840 5072.7 5262.5 6042 6293.5 5812.6 4900.7 5130.5 7916.6 6902.7 24498 1 1 1 1 1 1 1 1 1 1 859 758 762 808 947 947 DNLTLWTSDMQGDGEEQNKEALQDVEDENQ 30 Unmodified _DNLTLWTSDMQGDGEEQNKEALQDVEDENQ_ 0 0 0 1 P62258 P62258 P62258 YWHAE 14-3-3 protein epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1304.27258300781 3 1151.16199 3450.46413 27488.3668453067 1.8035 0.0020761 132710 152.77 132720 152.78 1304.27130155291 90.525 0.62542 90.525 90.221 90.847 0 114 21 7 0.967157865997975 0.00452127949011077 0.164476147326158 5.2289E-35 1 21059 319.77 308.87 1 113700000 5287.6 5080.9 6213.3 5192.8 4588.3 5651 4920.9 5655.7 6650.5 17696 5006.9 4800.4 6184 5332.4 4758.5 5677.2 5040.5 6206.1 6488.7 16794 1 1 1 1 1 1 1 1 1 1 860 758 762 808 948 948 DNLTLWTSDQQDDDGGEGNN 20 Unmodified _DNLTLWTSDQQDDDGGEGNN_ 0 0 0 0 P61981 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.686218261719 3 731.964952 2192.87303 34696.9497099192 1.9012 0.0013916 104360 76.388 104360 76.389 808.687179192637 79.04 2.5217 79.04 78.318 80.84 -1.4211E-14 284 86 7 0.98100984287338 0.00968483323443084 0.102549040304438 1.1923E-08 2 18453 125.51 116.35 1 1177300000 15869 15861 15974 16921 15605 17778 17631 17227 18065 21576 15017 14990 16078 17323 15887 17815 17861 17951 17806 20715 2 2 2 2 2 2 2 2 2 2 861 753 763 809 949;950 949 DNLTLWTSDQQDDDGGEGNN 20 Unmodified _DNLTLWTSDQQDDDGGEGNN_ 0 0 0 0 P61981 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1212.52856445313 2 1097.44379 2192.87303 28399.2552898029 1.7967 0.0019717 104410 114.58 104410 114.58 1212.52647571291 79.034 1.855 79.034 78.636 80.491 1.4211E-14 251 63 7 0.979898659224047 0.00352529016914617 0.195882149799311 6.7799E-31 1 18639 305.14 282.98 1 673760000 3808.8 4648.8 3235.8 6123.8 6971.2 5352.1 4921.2 5462.1 6553.7 12253 3601.9 4400 3333.1 6185.3 6826.4 5423.6 5152.5 5843.8 6397.3 11664 1 1 1 1 1 1 1 1 1 1 862 753 763 809 951 951 DNLTLWTSDQQDEEAGEGN 19 Unmodified _DNLTLWTSDQQDEEAGEGN_ 0 0 0 0 Q04917 Q04917 Q04917 YWHAH 14-3-3 protein eta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.688720703125 3 707.966293 2120.87705 35240.6798515735 1.4884 0.0010537 107900 76.388 107900 76.389 784.354257517352 80.366 1.1451 80.366 79.989 81.134 1.4211E-14 169 38 6 0.969563552174966 0.00290069883546555 0.0164075527718774 5.127E-08 1 18765 167.82 151.93 1 265140000 5042.5 4996.5 5445.6 4856.6 5153.2 6017.5 4986 4526.6 5154.5 13723 4773 4719.2 5456.3 5013.8 5244.6 5987 5087.9 5011.7 5078.8 13026 1 1 1 1 1 1 1 1 1 1 863 867 764 810 952 952 DNLTLWTSDSAGEECDAAEGAEN 23 Unmodified _DNLTLWTSDSAGEECDAAEGAEN_ 0 0 0 0 P27348 P27348 P27348 YWHAQ 14-3-3 protein theta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.387939453125 3 818.999445 2453.97651 32519.1752181614 1.6208 0.0013274 93270 76.388 93272 76.389 895.721972698549 82.688 1.2712 82.688 82.314 83.585 0 180 43 7 0.89860212592252 0.00852744647884448 0.290025070911305 5.1488E-08 1 19302 153.65 144.48 1 257410000 2791.1 6308.6 4559.5 5494 5012.4 4249.4 5777.1 5806.1 4790.7 12745 2647.7 5954.9 4496.4 5670.7 5069.8 4358.5 5816.8 6147.7 4768.8 12135 1 1 1 1 1 1 1 1 1 1 864 485 765 811 953 953 DNLTLWTSDTQGDEAEAGEGGEN 23 Unmodified _DNLTLWTSDTQGDEAEAGEGGEN_ 0 0 0 0 P63104 P63104 P63104 YWHAZ 14-3-3 protein zeta/delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1320.08850097656 2 1205.00167 2407.98879 27026.1042839992 1.9094 0.0023008 95088 114.58 95090 114.58 1320.08429566705 81.524 0.98064 81.524 81.164 82.145 0 137 33 6 0.981202746886609 0.00214910949095094 0.132170173221873 1.0395E-31 1 19033 288.25 268.51 1 215100000 4221.6 4125.8 5396.6 3798.6 3404.2 4314.1 3755.7 4834 4745.6 12843 3999.1 3895.7 5342.8 3928.5 3578.1 4331.9 3833.2 5215.6 4640.5 12205 1 1 1 1 1 1 1 1 1 1 865 777 766 812 954 954 DNLTLWTSDTQGDEAEAGEGGEN 23 Unmodified _DNLTLWTSDTQGDEAEAGEGGEN_ 0 0 0 0 P63104 P63104 P63104 YWHAZ 14-3-3 protein zeta/delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.392761230469 3 803.670205 2407.98879 33409.8273092237 2.0539 0.0016506 95049 76.388 95051 76.389 880.392383952388 81.53 1.8948 81.53 81.134 83.028 0 271 65 7 0.978828583104451 0.00555230411131735 0.19707026559666 1.3338E-17 1 19216 161.64 141.38 1 869150000 3573.4 3932.7 3508.4 3567.7 4257.8 4456.9 4227.5 5332.7 4461 13181 3381.1 3713.1 3545.7 3699.8 4276.3 4463.5 4311 5712.4 4391.8 12535 1 1 1 1 1 1 1 1 1 1 866 777 766 812 955 955 DNLTLWTSENQGDEGDAGEGEN 22 Unmodified _DNLTLWTSENQGDEGDAGEGEN_ 0 0 0 0 P31946 P31946 P31946 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.046264648438 3 784.322917 2349.94692 33360.6050103202 1.8359 0.0014399 97393 76.388 97395 76.389 861.045103649194 79.099 1.2372 79.099 78.664 79.901 0 210 42 7 0.938492804001613 0.00676893622444407 0.072099279514734 1.1506E-11 2 18469 179.03 159.73 1 725940000 14848 18304 12856 16405 20852 13663 24959 21315 19346 26984 14043 17280 13166 16916 20742 13964 25056 21897 19327 25902 2 2 2 2 2 2 2 2 2 2 867 525 767 813 956;957 956 DNSPLREK 8 Phospho (STY) _DNS(ph)PLREK_ DNS(1)PLREK DNS(53.03)PLREK 0 0 1 1 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.898193359375 2 519.734421 1037.45429 34929.813196684 2.3267 0.0012093 440920 229.16 440920 229.16 748.897299761983 38.007 0.46957 38.007 37.741 38.211 0 41 15 4 0.764877159366972 0.00197889980621829 0.0606886239013014 0.040634 1 8591 53.034 33.94 1 30170000 32656 29529 30980 31292 25100 31576 25705 27477 31897 4426.2 30895 27905 31221 32027 25833 31595 26306 27854 31210 4803.7 1 1 1 1 1 1 1 1 1 1 868 1204 768 814 958 958 2110 DNSPSLK 7 Phospho (STY) _DNS(ph)PSLK_ DNS(0.963)PS(0.037)LK DNS(14.19)PS(-14.19)LK 0 0 1 0 Q8IY22 Q8IY22 Q8IY22 CMIP C-Maf-inducing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.842407226563 2 420.678583 839.342613 38758.385632106 2.2814 0.00095974 544750 229.16 544750 229.16 649.841487802197 42.52 0.6882 42.52 42.223 42.911 0 65 23 4 0.963110810507699 0.00337132521399108 0.0644507394707633 0.0014944 2 9755 115.57 25.472 2 68200000 43773 102420 45655 97366 93677 42817 92191 79106 106230 14484 41428 96720 46449 99404 92220 45835 94298 78379 104220 15470 2 2 2 2 2 2 2 2 2 2 869 1432 769 815 959;960 960 2611 DNTFFRESPVGR 12 Phospho (STY) _DNTFFRES(ph)PVGR_ DNTFFRES(1)PVGR DNT(-58.64)FFRES(58.64)PVGR 0 0 1 1 Q8NEY8 Q8NEY8 Q8NEY8 PPHLN1 Periphilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 578.612182617188 3 502.224195 1503.65076 40987.1187928925 1.2783 0.00064202 152100 76.387 152100 76.388 578.611695107555 59.597 1.5283 59.597 59.247 60.776 0 197 52 5 0.94197736617118 0.00930633185680191 0.1429229858995 1.8914E-05 1 13925 134.08 98.981 2 260030000 16676 15472 16822 13487 15871 14633 17197 17038 14866 2118.1 15781 14604 16922 13988 16178 14650 17378 17061 14768 2388.7 1 1 1 1 1 1 1 1 1 1 870 1518 770 816 961 961 2784 DNTFFRESPVGR 12 Phospho (STY) _DNTFFRES(ph)PVGR_ DNTFFRES(1)PVGR DNT(-74.31)FFRES(74.31)PVGR 0 0 1 1 Q8NEY8 Q8NEY8 Q8NEY8 PPHLN1 Periphilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.415832519531 2 752.832655 1503.65076 33603.1057993023 1.5568 0.001172 152200 114.58 152200 114.58 867.414354495525 59.615 1.1504 59.615 59.278 60.429 0 112 39 4 0.969128983903729 0.00102972121432405 0.0231338976511843 9.5826E-05 1 14047 123.18 95.89 2 71530000 14493 14148 16111 14438 14678 15878 13936 17183 15157 28617 13720 13367 16111 14830 14970 15922 14255 18047 14903 27344 1 1 1 1 1 1 1 1 1 1 871 1518 770 816 962 962 2784 DNTNLFLQKPGSFSK 15 Phospho (STY) _DNTNLFLQKPGS(ph)FSK_ DNTNLFLQKPGS(0.998)FS(0.002)K DNT(-110.48)NLFLQKPGS(27.54)FS(-27.54)K 0 0 1 1 Q9UIF8 Q9UIF8 Q9UIF8 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.783386230469 3 592.616982 1774.82912 35416.3968743454 2.7306 0.0016182 386700 229.16 386700 229.17 822.115087645575 82.392 0.42531 82.392 82.201 82.626 0 50 14 5 0.923803595030263 0.00209938743017142 0.0481313755868068 5.8269E-07 1 19300 148.75 131.45 3 15887000 25466 11097 25888 10025 14401 26107 14283 17880 12076 13480 24099 10477 25903 10617 15289 25372 14484 18660 12009 13106 1 1 1 1 1 1 1 1 1 1 872 2156 771 817 963 963 3881 DNTRPGANSPEMWSEAIK 18 Oxidation (M),Phospho (STY) _DNTRPGANS(ph)PEM(ox)WSEAIK_ DNTRPGANSPEM(1)WSEAIK DNT(0.002)RPGANS(0.998)PEMWSEAIK DNTRPGANSPEM(92.15)WSEAIK DNT(-28.17)RPGANS(28.17)PEMWS(-39.54)EAIK 0 1 1 1 Q92499 Q92499 Q92499 DDX1 ATP-dependent RNA helicase DDX1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.412536621094 3 700.301504 2097.88268 33607.4100197523 1.7674 0.0012377 218160 152.78 218160 152.78 853.411901399129 64.98 0.72093 64.98 64.622 65.343 0 58 24 3 0.979488068570701 0.00180877621439487 0.0193513995225537 0.0060832 1 15276 92.147 63.497 3 16495000 12057 8422.3 11874 7426.5 8955.3 12321 8813.9 11145 8993.8 13687 11408 7950.6 11931 7764.8 9258.4 12143 8983.5 11637 8866.6 13146 1 1 1 1 1 1 1 1 1 1 873 1589 772 818 964 964 187 2920 DNTRPGANSPEMWSEAIK 18 Phospho (STY) _DNTRPGANS(ph)PEMWSEAIK_ DNTRPGANS(1)PEMWSEAIK DNT(-48.54)RPGANS(43.11)PEMWS(-43.11)EAIK 0 0 1 1 Q92499 Q92499 Q92499 DDX1 ATP-dependent RNA helicase DDX1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.747924804688 3 694.969866 2081.88777 33252.7389419527 1.8914 0.0013145 219830 152.78 219830 152.78 848.080094804653 72.386 0.85447 72.386 71.779 72.634 0 71 28 4 0.982129772239643 0.00159789012038168 0.01357879491347 5.684E-11 1 16990 189.2 151.96 3 24819000 16861 17045 19236 17563 16619 17860 14580 17928 15987 14475 15963 16105 19198 18007 16992 17916 14978 18417 15714 14045 1 1 1 1 1 1 1 1 1 1 874 1589 772 819 965 965 2920 DNYVPEVSALDQEIIEVDPDTK 22 Unmodified _DNYVPEVSALDQEIIEVDPDTK_ 0 0 0 0 P0CW22;P08708 P0CW22 P0CW22 RPS17L;RPS17 40S ribosomal protein S17-like;40S ribosomal protein S17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 983.513671875 3 830.402508 2488.18569 30707.6583585521 1.5654 0.0012999 183980 152.78 183980 152.78 983.513579636346 99.883 0.13972 99.883 99.807 99.947 0 19 4 6 0.800270339980557 0.00233429582709591 0.0861002332953972 7.147E-05 1 23278 104.41 89.26 1 236880000 12511 15280 13873 12385 18397 20128 16707 21439 12913 92726 11844 14418 13943 13018 18375 20021 16983 24248 12902 87809 1 1 1 1 1 1 1 1 1 1 875 337 773 820 966 966 DPAQPMSPGEATQSGAR 17 Phospho (STY) _DPAQPMS(ph)PGEATQSGAR_ DPAQPMS(1)PGEATQSGAR DPAQPMS(61.49)PGEAT(-61.49)QS(-104.14)GAR 0 0 1 0 Q9BQG0 Q9BQG0 Q9BQG0 MYBBP1A Myb-binding protein 1A MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1004.95300292969 2 890.372015 1778.72948 NaN NaN NaN NaN NaN NaN NaN NaN 43.032 1 43.032 42.532 43.532 0 NaN NaN NaN 6.3449E-27 1 9845 266.39 225.63 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 876 1807 774 821 967 967 3313 DPAQPMSPGEATQSGARPADR 21 Oxidation (M),Phospho (STY) _DPAQPM(ox)S(ph)PGEATQSGARPADR_ DPAQPM(1)SPGEATQSGARPADR DPAQPMS(1)PGEATQSGARPADR DPAQPM(89.57)SPGEATQSGARPADR DPAQPMS(43.61)PGEAT(-43.61)QS(-43.61)GARPADR 0 1 1 1 Q9BQG0 Q9BQG0 Q9BQG0 MYBBP1A Myb-binding protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.376892089844 3 745.654718 2233.94232 34601.6772654887 2.2977 0.0017133 102440 76.387 102440 76.389 822.375753135567 31.105 0.32805 31.105 30.911 31.239 0 20 10 2 0.94235189686184 0.000543886513296026 0.0251095427584579 0.0079845 1 6957 89.565 64.971 3 7704300 5340.1 5240.2 4510.7 5605.5 4563.1 4155.2 3378 5270.2 5527.2 2366.7 5050 4952.3 4588.1 5709.9 4612.8 4248.2 3554.3 5314.5 5362.5 2350.5 1 1 1 1 1 1 1 1 1 1 877 1807 775 822 968 968 204 3313 DPQELLEGGNQGEGDPQAEGR 21 Unmodified _DPQELLEGGNQGEGDPQAEGR_ 0 0 0 0 P49593 P49593 P49593 PPM1F Protein phosphatase 1F MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.388793945313 3 732.664837 2194.97268 34881.9539611809 2.3235 0.0017024 104260 76.387 104260 76.389 809.052737767155 63.126 0.55918 63.126 62.874 63.433 -7.1054E-15 52 18 4 0.926520375474132 0.00265059129835627 0.0399456344972319 9.151E-08 1 14847 150.64 135.2 1 12285000 6256.6 7040 6736.3 7065.1 6749.3 7162.9 6280 7170 6777.5 12288 5922.2 6650.6 6754.8 7254.2 6842.2 7198.6 6428.7 7562 6666.3 11737 1 1 1 1 1 1 1 1 1 1 878 644 776 823 969 969 DPVQEAWAEDVDLR 14 Unmodified _DPVQEAWAEDVDLR_ 0 0 0 0 P14618 P14618 P14618 PKM Pyruvate kinase PKM MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 936.471862792969 2 821.889009 1641.76346 31993.2595886789 1.8276 0.0015021 139410 114.58 139410 114.58 936.469647796316 83.92 0.6012 83.92 83.585 84.187 0 51 20 3 0.989104865655561 0.00115494669928959 0.0264916150985139 1.0848E-10 1 19580 232.37 182.66 1 15391000 7144.5 5480.2 8071 6160.2 13538 6832.6 13378 9956.8 5180.5 25574 6764 5180.8 8140.4 6294.4 13406 6905.9 13401 10637 5459.2 24312 1 1 1 1 1 1 1 1 1 1 879 388 777 824 970 970 DQAPSNSPVLSTLFPNQCLDWTNLK 25 Phospho (STY) _DQAPSNS(ph)PVLSTLFPNQCLDWTNLK_ DQAPS(0.039)NS(0.953)PVLS(0.004)T(0.004)LFPNQCLDWTNLK DQAPS(-13.92)NS(13.92)PVLS(-23.63)T(-23.63)LFPNQCLDWT(-101.47)NLK 0 0 1 0 Q5VTD9 Q5VTD9 Q5VTD9 GFI1B Zinc finger protein Gfi-1b MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1128.89990234375 3 975.787801 2924.34157 29155.3434599631 0.1638 0.00015983 156570 152.77 156570 152.77 1128.89967373127 101.32 0.1151 101.32 101.24 101.36 0 9 3 4 0.969903158189706 0.00579391580443402 0.152452189317258 5.6794E-06 1 23805 136.49 115.64 5 49752000 3999 21206 6347.5 23628 14416 6544 14554 17841 22108 89554 3792.9 20046 6355.6 23838 14162 7632.1 15015 20156 21493 84738 1 1 1 1 1 1 1 1 1 1 880 1202 778 825 971 971 2105 DQHHLGSPSR 10 Phospho (STY) _DQHHLGS(ph)PSR_ DQHHLGS(0.628)PS(0.372)R DQHHLGS(2.27)PS(-2.27)R 0 0 1 0 Q9H8M2 Q9H8M2 Q9H8M2 BRD9 Bromodomain-containing protein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 481.5634765625 3 405.175176 1212.5037 44115.556103871 1.2402 0.00050252 188530 76.388 188530 76.389 481.562879534087 22.473 0.25944 22.473 22.342 22.602 0 15 8 2 0.559223012404172 0.00425781646704464 0.0457580602718411 0.0010029 1 5064 98.943 51.384 2 4906800 3789.1 3930.5 3918.4 3276 3350.9 4312.8 4415.8 4361 4290.2 3885.5 3585.9 3709.2 3933.3 3420.3 3448.9 4284.6 4440.3 4489.6 4238.4 3759.6 1 1 1 1 1 1 1 1 1 1 881 1959 779 826 972 972 3567 DQQEAALVDMVNDGVEDLR 19 Oxidation (M) _DQQEAALVDM(ox)VNDGVEDLR_ DQQEAALVDM(1)VNDGVEDLR DQQEAALVDM(105.67)VNDGVEDLR 0 1 0 0 P09211 P09211 P09211 GSTP1 Glutathione S-transferase P MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.388305664063 3 711.663669 2131.96918 35106.8156233842 1.5548 0.0011065 107340 76.388 107340 76.389 788.386205261743 84 0.77279 84 83.526 84.299 0 85 26 4 0.981491429114588 0.00335918957328407 0.0393269851456739 5.7351E-05 1 19587 105.67 85.564 1 14954000 5271.2 7069.1 6784.1 7327 5162.3 6588.3 6189.3 7154.2 6990 10635 4993.5 6679.4 6726.3 7495.5 5349.7 6663.9 6272.8 7474.7 6863.1 10180 1 1 1 1 1 1 1 1 1 1 882 339 780 827 973 973 39 DQQEAALVDMVNDGVEDLR 19 Unmodified _DQQEAALVDMVNDGVEDLR_ 0 0 0 0 P09211 P09211 P09211 GSTP1 Glutathione S-transferase P MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.719970703125 3 706.332031 2115.97426 35196.0117116366 1.3489 0.00095275 108150 76.387 108150 76.388 783.389244389454 87.538 0.58857 87.538 87.349 87.938 0 33 19 3 0.749863140915922 0.00128818595690042 0.0257422020350932 1.0596E-07 1 20435 159.06 126.37 1 9592000 4356 4772.6 4783.7 4389 4072.7 4304.8 4921.9 4877.7 4774.1 15345 4123.4 4506.3 4785.2 4528.6 4186.8 4354.7 4965.3 5332.8 4716.9 14562 1 1 1 1 1 1 1 1 1 1 883 339 780 828 974 974 DQQEAALVDMVNDGVEDLR 19 Unmodified _DQQEAALVDMVNDGVEDLR_ 0 0 0 0 P09211 P09211 P09211 GSTP1 Glutathione S-transferase P MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.055419921875 3 706.332031 2115.97426 34545.8746917867 1.4272 0.0010081 108150 76.388 108150 76.389 783.054169058682 99.885 0.25256 99.885 99.75 100 0 28 8 6 0.981527358550978 0.0363201753714124 0.975763458951587 5.5972E-16 1 23265 220.04 177.02 1 423000000 19246 36018 21946 46595 33616 23223 27082 33528 49356 37127 18221 34085 22073 46821 33353 24520 28491 34351 47755 35735 1 1 1 1 1 1 1 1 1 1 884 339 780 828 975 975 DQRPSSPIR 9 Phospho (STY) _DQRPSS(ph)PIR_ DQRPS(0.251)S(0.749)PIR DQRPS(-4.74)S(4.74)PIR 0 0 1 1 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.849060058594 2 568.26642 1134.51829 37507.1541092813 1.6058 0.00091254 201630 114.58 201630 114.58 682.847535902834 25.943 0.34387 25.943 25.815 26.159 0 31 11 4 0.989643858747062 0.00314999512121816 0.0209982654788199 0.0035902 1 5780 94.747 72.743 2 36965000 11948 11764 11431 12916 9897.5 11306 10241 11848 12578 2595.6 11304 11120 11522 13165 10142 11416 10472 11941 12312 2718.3 1 1 1 1 1 1 1 1 1 1 885 1183 781 829 976 976 2059;2060 DQSPFSK 7 Phospho (STY) _DQS(ph)PFSK_ DQS(0.993)PFS(0.007)K DQS(21.63)PFS(-21.63)K 0 0 1 0 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.842834472656 2 444.678583 887.342613 37945.057651528 2.6653 0.0011852 515340 229.16 515350 229.16 673.841855437167 51.328 1.6115 51.328 50.879 52.491 0 174 55 5 0.889525616782397 0.0405668752822402 1 0.0016612 1 11904 112.89 64.934 2 952260000 239350 361030 218510 355140 307160 213910 324640 283040 364840 4599.3 226410 341010 222340 362740 306750 221590 330720 281370 358280 10881 1 1 1 1 1 1 1 1 1 1 886 952 782 830 977 977 1583 DQVNLSPK 8 Phospho (STY) _DQVNLS(ph)PK_ DQVNLS(1)PK DQVNLS(85.84)PK 0 0 1 0 Q5FBB7 Q5FBB7 Q5FBB7 SGOL1 Shugoshin-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.261352539063 3 327.486469 979.437576 46990.7586896676 0.12717 4.1648E-05 466510 152.77 466510 152.77 480.261322706565 52.918 0.34864 52.918 52.635 52.984 0 19 11 2 0.925772327012845 0.000667478169079925 0.00516050794664511 0.0060472 1 12313 85.845 55.64 1 16679000 9349.2 12677 11020 12920 7823.2 11141 8041.3 9088.7 12568 2667.2 8853 11977 10962 13222 8135.1 11226 8298.8 9276.6 12209 2721.9 1 1 1 1 1 1 1 1 1 1 887 1161 783 831 978 978 2010 DRDASPSKEER 11 Phospho (STY) _DRDAS(ph)PSKEER_ DRDAS(1)PSKEER DRDAS(36.52)PS(-36.52)KEER 0 0 1 2 Q9BUQ8 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.307312011719 3 457.196305 1368.56709 39643.264167365 1.8117 0.00082831 334160 152.78 334160 152.78 609.971344153038 23.844 1.1307 23.844 23.671 24.802 0 111 38 5 0.976632901145036 0.00927558804630155 0.0547915496596348 0.00025208 1 5329 105.46 66.847 2 61454000 5463.2 7144.9 6494.7 7180.1 8024.5 6571.2 8965.8 8989.1 8484.8 1737.2 5173.4 6749.8 6501 7360.4 8065.8 6647.4 9068 8975.3 8392.3 1843.8 1 1 1 1 1 1 1 1 1 1 888 1835 784 832 979 979 3358 DREPHGYSPER 11 Phospho (STY) _DREPHGYS(ph)PER_ DREPHGY(0.006)S(0.994)PER DREPHGY(-22.05)S(22.05)PER 0 0 1 1 Q9HCM7 Q9HCM7 Q9HCM7 FBRSL1 Fibrosin-1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.252685546875 3 474.864779 1421.57251 43329.8129820661 1.2091 0.00057418 160860 76.387 160860 76.388 551.252150885822 25.79 0.54478 25.79 25.471 26.016 0 37 18 3 0.631576258063208 0.00115960533569521 0.00438010005613357 0.039587 1 5771 43.297 15 2 7122900 5388.2 3596.8 6209.7 3174.9 3516.6 7239.3 4591 4270.3 3652.6 2236.2 5101.7 3395.4 6174.6 3350.9 3742 7041.9 4596 4465.9 3643.9 2204.5 1 1 1 1 1 1 1 1 1 1 889 1990 785 833 980 980 3615 DRESLRR 7 Phospho (STY) _DRES(ph)LRR_ DRES(1)LRR DRES(74.6)LRR 0 0 1 2 Q14152 Q14152 Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 414.217224121094 3 337.829229 1010.46586 48202.3924652159 0.54214 0.00018315 226110 76.388 226110 76.388 414.217209482902 21.931 0.45511 21.931 21.685 22.14 0 39 15 4 0.887469308732429 0.0312879057549052 0.259775426391638 0.017277 1 4946 74.6 39.278 1 12757000 12873 6781.9 13683 7098.9 10537 14105 9690.2 10612 6525.1 7035.3 12184 6408.4 13691 7382.2 10863 13795 9817.8 10992 6572.5 6870.2 1 1 1 1 1 1 1 1 1 1 890 989 786 834 981 981 1670 DRLGSYSGPTSVSR 14 Phospho (STY) _DRLGS(ph)YSGPTSVSR_ DRLGS(1)YSGPTSVSR DRLGS(37.5)Y(-72.51)S(-37.5)GPT(-67.41)S(-74.16)VS(-96.35)R 0 0 1 1 Q9BZ23 Q9BZ23 Q9BZ23 PANK2 Pantothenate kinase 2, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.626281738281 3 521.238393 1560.69335 42158.2809718577 0.81988 0.00042735 146550 76.388 146550 76.388 597.96005062379 46.493 0.45471 46.493 46.287 46.742 7.1054E-15 38 15 3 0.64508314888087 0.000918094936968648 0.00626119141319318 0.0001631 1 10750 105.91 88.206 6 17972000 10912 11961 10309 11546 12047 10732 10888 11908 9750.8 3720.9 10323 11296 10434 11867 12105 10815 11107 12011 9669.3 3779.3 1 1 1 1 1 1 1 1 1 1 891 1873 787 835 982 982 3410 DRLSPESQLTEAPDR 15 Phospho (STY) _DRLS(ph)PESQLTEAPDR_ DRLS(0.999)PES(0.001)QLTEAPDR DRLS(29.99)PES(-29.99)QLT(-66.24)EAPDR 0 0 1 1 Q99684 Q99684 Q99684 GFI1 Zinc finger protein Gfi-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.995910644531 3 598.607034 1792.79927 37804.9476060681 1.3501 0.00080819 127610 76.387 127610 76.388 675.327634741711 52.659 0.40748 52.659 52.463 52.87 0 58 13 6 0.956714740732544 0.00365887801894069 0.0573410471701885 7.0406E-11 1 12260 199.7 173.15 3 29902000 17442 10167 16259 9694.1 11124 17317 12551 14473 9954 5022.6 16500 9602.1 16379 10105 11609 16991 12636 14779 9931.7 5064.3 1 1 1 1 1 1 1 1 1 1 892 1782 788 836 983 983 3284 DRPQEADGIDSVIVVDNVPQVGPDR 25 Unmodified _DRPQEADGIDSVIVVDNVPQVGPDR_ 0 0 0 1 P55884 P55884 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 974.175842285156 3 897.450855 2689.33074 31662.8025531459 1.3047 0.0011709 85116 76.388 85118 76.389 974.173317809392 76.325 0.78637 76.325 75.86 76.647 0 67 26 4 0.926024286845018 0.00450952899005928 0.0866683644496717 1.8038E-17 1 17894 232.19 211.76 1 20552000 2854.2 4029.4 3570.4 3944.5 4155 3552.5 2792.8 4185.3 4259.4 16481 2703.5 3805.9 3558.6 4049 4164.1 3617.4 2948.4 4670.2 4140.5 15616 1 1 1 1 1 1 1 1 1 1 893 725 789 837 984 984 DRPSESDELQTIQEDSAATSESLDVMASQK 30 Phospho (STY) _DRPS(ph)ESDELQTIQEDSAATSESLDVMASQK_ DRPS(0.703)ES(0.297)DELQTIQEDSAATSESLDVMASQK DRPS(3.74)ES(-3.74)DELQT(-55.67)IQEDS(-152.32)AAT(-203.04)S(-216.42)ES(-243.08)LDVMAS(-318.67)QK 0 0 1 1 P02686 P02686 P02686 MBP Myelin basic protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 952.450134277344 4 837.617169 3346.43957 33012.369391002 1.5188 0.0012722 136800 114.58 136800 114.58 952.700888234148 94.593 0.54102 94.593 94.373 94.914 0 61 18 4 0.887882079244622 0.00230164581662751 0.0497257425536181 4.102E-45 1 22035 326.13 302.46 8 18667000 1935.5 1437.5 2480.8 1546.4 2160.7 1718.5 1842.6 3233.8 1677.6 29144 1833.5 1358.6 2462.2 1583.9 2206.9 1788.7 1886.4 4063.2 1662.3 27518 1 1 1 1 1 1 1 1 1 1 894 286 790 838 985 985 477 DRPVGGSPGGPR 12 Phospho (STY) _DRPVGGS(ph)PGGPR_ DRPVGGS(1)PGGPR DRPVGGS(106.76)PGGPR 0 0 1 1 Q8NHG8 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 730.864135742188 2 616.282601 1230.55065 37264.3045976541 1.3492 0.00083146 185920 114.58 185920 114.58 730.863256607787 26.641 0.2866 26.641 26.453 26.74 3.5527E-15 23 9 3 0.96382453792163 0.00136653678326471 0.0125961149565634 0.00019667 1 5927 106.76 62.118 1 20011000 8876.6 5347.9 9077.4 5793 5327.8 10187 4953.6 6464.9 6453.6 1788.1 8400.2 5054.5 9082.3 5991.5 5624.2 9971.3 5101.4 6682.8 6304.2 1833.3 1 1 1 1 1 1 1 1 1 1 895 1525 791 839 986 986 2804 DRRGQDVR 8 Unmodified _DRRGQDVR_ 0 0 0 2 Q86V88 Q86V88 Q86V88 MDP1 Magnesium-dependent phosphatase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.84765625 2 501.265396 1000.51624 41198.6086953719 1.2025 0.00060279 228590 114.58 228590 114.58 615.848329506651 62.615 0.384 62.615 62.461 62.845 0 30 12 3 0.982093251119934 0.00130140639510804 0.0384478347843377 0.045231 1 14706 40.067 9.4971 1 9523200 13292 10006 13517 10397 13634 14089 14201 11977 9968.8 4798.1 12579 9454.9 13601 10711 13833 13940 14312 12240 10016 4795.2 1 1 1 1 1 1 1 1 1 1 896 1378 792 840 987 987 DRSPIRGSPR 10 2 Phospho (STY) _DRS(ph)PIRGS(ph)PR_ DRS(1)PIRGS(1)PR DRS(52.27)PIRGS(52.27)PR 0 0 2 2 Q9HCD5 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.362976074219 2 650.781583 1299.54861 36450.5551044412 1.8837 0.0012259 176070 114.58 176070 114.58 765.362521264017 24.416 0.75376 24.416 24.107 24.861 -3.5527E-15 52 25 3 0.976981815877927 0.000820580950368056 0.0331697585284181 0.025492 1 5434 52.265 34.898 1 2674700 2543.4 1754.3 3082.4 2062.8 1645.9 2427.1 2044.7 1472.6 1924.6 1859.1 2408.7 1659 3056 2105.1 1760.6 2408.1 2058.9 1570.1 1904.1 1784.6 1 1 1 1 1 1 1 1 1 1 897 1985 793 841 988 988 3604;3605 DRSPLRR 7 Phospho (STY) _DRS(ph)PLRR_ DRS(1)PLRR DRS(55.25)PLRR 0 0 1 2 Q96PK6;Q9BQ04;Q9BWF3 Q96PK6;Q9BWF3 Q96PK6 RBM14;RBM4B;RBM4 RNA-binding protein 14;RNA-binding protein 4B;RNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 403.553680419922 3 327.165952 978.476027 48923.8156361038 0.43393 0.00014197 233480 76.388 233480 76.388 403.55388569537 22.935 0.92376 22.935 22.718 23.642 0 111 31 5 0.989634842830226 0.0290852094062242 0.547052586535234 0.04026 1 5130 55.249 25.494 1 311060000 13327 17326 13670 16924 11709 12776 10904 14820 16750 4367.5 12612 16365 13720 17335 11992 13025 11298 14918 16279 4455.5 1 1 1 1 1 1 1 1 1 1 898 1723;1850 794 842 989 989 3169;3383 DRSPPKSPEK 10 2 Phospho (STY) _DRS(ph)PPKS(ph)PEK_ DRS(1)PPKS(1)PEK DRS(40.48)PPKS(40.48)PEK 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.681213378906 3 434.182659 1299.52615 38304.7960062736 2.4494 0.0010635 527810 229.16 527810 229.16 663.346596481937 32.862 0.75574 32.862 32.5 33.256 0 53 25 3 0.85750939653363 0.0020664633883142 0.0352106846068367 0.051588 1 7370 40.482 27.282 1 11682000 13968 13481 15135 14668 10433 15255 10007 12531 14791 3415.3 13221 12742 15115 14998 10863 15237 10338 12778 14391 3505.9 1 1 1 1 1 1 1 1 1 1 899 2226 795 843 990 990 4038;4039 DRSSPPPGYIPDELHQVAR 19 Phospho (STY) _DRS(ph)SPPPGYIPDELHQVAR_ DRS(0.499)S(0.499)PPPGY(0.003)IPDELHQVAR DRS(0)S(0)PPPGY(-22.26)IPDELHQVAR 0 0 1 1 Q9Y2U5 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 611.806640625 4 554.263938 2213.02665 41638.4075900904 1.5237 0.00084454 103360 57.291 103370 57.292 611.805292466773 61.068 0.79069 61.068 60.685 61.476 0 66 26 3 0.500995297902816 0.00158465029228382 0.0226040671794688 0.0095579 1 14322 80.752 53.103 3 9154800 4727.1 3716.2 4170.5 4161.8 3365.8 5446.5 3251.9 4002 4878 1926.2 4471 3513.1 4221.4 4266.6 3463.1 5387.4 3360.2 4128.3 4744.1 1906.3 1 1 1 1 1 1 1 1 1 1 900 2254 796 844 991 991 4160;4161 DRTLIRIMVSR 11 Phospho (STY) _DRT(ph)LIRIMVSR_ DRT(0.997)LIRIMVS(0.003)R DRT(24.88)LIRIMVS(-24.88)R 0 0 1 2 P50995 P50995 P50995 ANXA11 Annexin A11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 417.986358642578 4 360.694269 1438.74797 47749.9062867813 0.17017 6.1379E-05 158840 57.292 158840 57.292 417.986292977892 56.766 0.76362 56.766 56.397 57.16 7.1054E-15 70 25 5 0.909050527615616 0.00218710325153145 0.0836168058143684 0.029153 1 13231 55.841 24.207 2 27695000 11401 7937.8 11653 11811 11935 7536.3 6555.3 7306.8 10877 1058.3 10790 7520.6 11712 11822 12023 7743.9 7049.4 7370 10549 1165.6 1 1 1 1 1 1 1 1 1 1 901 673 797 845 992 992 4476 DRTPPLLYR 9 Phospho (STY) _DRT(ph)PPLLYR_ DRT(1)PPLLYR DRT(74.37)PPLLY(-74.37)R 0 0 1 1 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.591613769531 3 404.204184 1209.59072 45258.7106570507 0.35572 0.00014378 188980 76.387 188980 76.388 480.591700247178 55.851 1.7092 55.851 55.074 56.783 -7.1054E-15 198 57 5 0.909515838218138 0.00182075021714172 0.0239964474274607 0.0024708 2 12922 99.498 67.194 2 283680000 18937 19358 18869 17735 18441 16745 19411 18852 20592 4537.8 17919 18278 19000 18293 18754 16864 19744 18965 20268 4709.2 2 2 2 2 2 2 2 2 2 2 902 1755 798 846 993;994 993 4742 DRYSAGK 7 Phospho (STY) _DRYS(ph)AGK_ DRYS(1)AGK DRY(-46.48)S(46.48)AGK 0 0 1 1 P17844 P17844 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 445.567260742188 3 292.791892 875.353847 47558.9525143988 1.4471 0.00042371 521790 152.77 521790 152.78 445.566941291786 30.9 0.50972 30.9 30.672 31.181 0 44 16 4 0.716040951449212 0.00365335819730577 0.135609828071323 0.0081587 1 6891 81.771 64.258 2 25616000 32976 33536 32880 29219 20608 34237 23801 32522 33781 2765.3 31203 31656 32969 30345 21692 34077 24347 32771 32908 3356.5 1 1 1 1 1 1 1 1 1 1 903 421 799 847 995 995 679 DSAAPSPIPGADNLSADPVVSPPTSIPFK 29 Phospho (STY) _DSAAPSPIPGADNLS(ph)ADPVVSPPTSIPFK_ DS(0.014)AAPS(0.25)PIPGADNLS(0.724)ADPVVS(0.011)PPTSIPFK DS(-17.08)AAPS(-4.63)PIPGADNLS(4.63)ADPVVS(-18.1)PPT(-33)S(-32.52)IPFK 0 0 1 0 Q5T1M5 Q5T1M5 Q5T1M5 FKBP15 FK506-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.690368652344 4 732.60731 2926.40013 34190.2443141251 1.6594 0.0012157 156400 114.58 156400 114.58 847.440110325914 99.706 0.2853 99.706 99.522 99.807 0 32 9 5 0.871959856671763 0.00291176408608207 0.0366040526633034 0.018924 1 23216 59.661 42.724 6 73983000 14168 10503 9083.9 10470 16184 15315 14817 14180 12416 38639 13387 9921.3 9523.6 10831 15982 15194 15083 15432 12353 36711 1 1 1 1 1 1 1 1 1 1 904 1182 800 848 996 996 2055 DSAPSTPTSPTEFLTPGLR 19 Phospho (STY) _DSAPSTPTS(ph)PTEFLTPGLR_ DSAPST(0.001)PT(0.025)S(0.97)PT(0.004)EFLTPGLR DS(-44.78)APS(-37.41)T(-32.55)PT(-15.81)S(15.81)PT(-24.14)EFLT(-41.97)PGLR 0 0 1 0 Q9NZJ4 Q9NZJ4 Q9NZJ4 SACS Sacsin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.045043945313 3 685.320782 2052.94052 36040.9654071478 1.2599 0.00086344 111460 76.387 111460 76.388 761.708437044972 86.43 0.57306 86.43 86.131 86.704 0 48 19 3 0.756103033905705 0.00156474762157283 0.025580307304904 0.0094002 1 20167 76.156 58.455 7 8576700 7758.5 5776.1 7409.3 6793.6 6470.7 7141.4 6473.5 6911.2 6966 12015 7340.2 5462.2 7469.3 6918.9 6622.4 7162.4 6602.8 7303.4 6852.5 11474 1 1 1 1 1 1 1 1 1 1 905 2083 801 849 997 997 3774 DSENLASPSEYPENGER 17 Phospho (STY) _DSENLAS(ph)PSEYPENGER_ DSENLAS(0.999)PS(0.001)EYPENGER DS(-54.61)ENLAS(30.32)PS(-30.32)EY(-92.83)PENGER 0 0 1 0 P52948 P52948 P52948 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.31982421875 3 658.596863 1972.76876 36561.2991560955 1.887 0.0012428 115980 76.387 115990 76.388 734.983844862527 49.086 0.54044 49.086 48.913 49.453 0 48 18 3 0.828200564021497 0.00206104206460486 0.0307452654205445 2.8578E-05 1 11400 128.01 110.75 4 14297000 8847.8 9928.7 10931 10545 8156 10081 9233.7 11361 10526 6241.9 8380.1 9382.8 10855 10782 8457.1 10153 9382.8 11534 10332 6140.4 1 1 1 1 1 1 1 1 1 1 906 699 802 850 998 998 1172 DSENTPVK 8 Phospho (STY) _DSENT(ph)PVK_ DS(0.001)ENT(0.999)PVK DS(-30.64)ENT(30.64)PVK 0 0 1 0 Q92922 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.364440917969 2 485.19988 968.385206 37784.0936598823 1.3228 0.00064183 472310 229.16 472310 229.16 714.363122869281 34.386 0.52682 34.386 34.162 34.689 0 56 17 6 0.514069577431388 0.00168982170216365 0.0742721563911262 0.021916 1 7729 72.34 32.295 2 39129000 34007 34412 35469 38351 27224 36612 22408 34106 37827 7007.7 32184 32530 35521 39110 28061 36757 23463 34519 36670 7388 1 1 1 1 1 1 1 1 1 1 907 1631 803 851 999 999 4720 DSESPSQK 8 Phospho (STY) _DSES(ph)PSQK_ DSES(0.999)PS(0.001)QK DS(-70.63)ES(30.13)PS(-30.13)QK 0 0 1 0 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 708.345764160156 2 479.181687 956.348821 37290.92027642 2.3496 0.0011259 478240 229.16 478240 229.16 708.344557811544 28.862 0.69928 28.862 28.581 29.28 -3.5527E-15 58 23 4 0.971425851689886 0.00841391910120783 0.136886288790516 3.2042E-13 1 6423 226.2 166.15 3 72460000 66040 90799 60152 88603 23587 54226 30460 57698 100660 7232.6 62469 85762 60474 90557 26259 55945 32598 57959 96346 8145.7 1 1 1 1 1 1 1 1 1 1 908 953 804 852 1000 1000 1595 DSESPSQKK 9 Phospho (STY) _DSES(ph)PSQKK_ DS(0.07)ES(0.748)PS(0.182)QKK DS(-10.31)ES(6.14)PS(-6.14)QKK 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.986999511719 3 362.488538 1084.44378 41526.4522119769 2.0769 0.00075285 632190 229.16 632200 229.16 591.985853371274 31.791 0.73479 31.791 31.413 32.148 -3.5527E-15 79 24 5 0.932185736829237 0.00352859856655064 0.0184361619664209 0.035512 1 7070 48.948 26.8 3 96388000 20205 31229 22375 32926 15341 19420 15340 21567 32798 3851.7 19127 29510 22320 33486 16000 20103 16093 21666 31621 4126 1 1 1 1 1 1 1 1 1 1 909 953 805 853 1001 1001 1595 DSFDNCSLGESSK 13 Phospho (STY) _DS(ph)FDNCSLGESSK_ DS(1)FDNCSLGESSK DS(52.56)FDNCS(-52.56)LGES(-75.94)S(-82.32)K 0 0 1 0 Q5UIP0 Q5UIP0 Q5UIP0 RIF1 Telomere-associated protein RIF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 992.441284179688 2 763.279261 1524.54397 31546.6671540289 1.8174 0.0013872 300230 229.16 300230 229.16 992.942137856674 58.067 0.38599 58.067 57.905 58.291 7.1054E-15 16 12 2 0.947719305840143 0.000383310864270013 0.00768437013017413 1.3512E-22 1 13608 259.96 240.43 4 14023000 9093.1 15369 9989.8 14188 8772 9901.4 9896.6 12003 16356 10705 8607.7 14512 9994.8 14571 8995.8 10163 10197 12281 15864 10357 1 1 1 1 1 1 1 1 1 1 910 1197 806 854 1002 1002 2090 DSGRLSPDLSVCGQPR 16 Phospho (STY) _DSGRLS(ph)PDLSVCGQPR_ DS(0.39)GRLS(0.608)PDLS(0.002)VCGQPR DS(-1.93)GRLS(1.93)PDLS(-25.61)VCGQPR 0 0 1 1 Q8TF76 Q8TF76 Q8TF76 GSG2 Serine/threonine-protein kinase haspin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.995971679688 3 608.60838 1822.80331 38276.5649248102 0.9927 0.00060417 125510 76.387 125510 76.388 684.995318233449 54.433 0.7243 54.433 54.031 54.755 0 69 24 3 0.854576703262712 0.00159600904943213 0.0338245319804674 0.010642 1 12640 72.082 59.936 3 30890000 16307 14973 16001 14305 9674.6 16486 8881.2 13168 14641 5035.2 15430 14140 16051 14764 10186 16395 9236.2 13489 14202 5046 1 1 1 1 1 1 1 1 1 1 911 1559 807 855 1003 1003 2867 DSGSQEVLSELR 12 Phospho (STY) _DSGS(ph)QEVLSELR_ DS(0.026)GS(0.974)QEVLSELR DS(-15.67)GS(15.67)QEVLS(-41.55)ELR 0 0 1 0 Q9BVJ6 Q9BVJ6 Q9BVJ6 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.390380859375 2 700.308678 1398.6028 33732.6755730314 1.9564 0.0013701 163620 114.58 163620 114.58 814.889237707079 67.883 0.62524 67.883 67.675 68.3 0 45 20 3 0.923191469537753 0.0013403604343199 0.0397341316271259 0.019257 1 15952 66.674 52.268 3 15447000 15041 19502 14436 17842 17469 15599 18733 17084 17683 19546 14231 18414 14611 18384 17565 15791 18979 17668 17493 18800 1 1 1 1 1 1 1 1 1 1 912 1844 808 856 1004 1004 3373 DSHSSEEDEASSQTDLSQTISK 22 Phospho (STY) _DSHSS(ph)EEDEASSQTDLSQTISK_ DS(0.012)HS(0.087)S(0.901)EEDEASSQTDLSQTISK DS(-18.62)HS(-10.18)S(10.18)EEDEAS(-121.33)S(-150.61)QT(-190.91)DLS(-243.48)QT(-258.26)IS(-271.84)K 0 0 1 0 Q5JTV8 Q5JTV8 Q5JTV8 TOR1AIP1 Torsin-1A-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 974.111450195313 3 821.001053 2459.98133 32155.2237469017 1.0358 0.00085038 186090 152.78 186090 152.78 974.11102772357 54.497 0.9796 54.497 53.945 54.924 -7.1054E-15 57 33 3 0.951531390161129 0.000908741869111438 0.00274268369984258 4.0331E-32 2 12729 300.97 280.53 9 24553000 7896.7 8295 8537.4 8059.1 8453.5 9242.2 8703.9 11244 9396.8 100940 7474.7 7834.7 8559.3 8308.3 8587.8 9426.3 8866.8 14242 9242.5 95308 2 2 2 2 2 2 2 2 2 2 913 1172 809 857 1005;1006 1006 2028 DSKPSSTPR 9 Phospho (STY) _DSKPSST(ph)PR_ DSKPS(0.005)S(0.011)T(0.984)PR DS(-42.38)KPS(-23.3)S(-19.34)T(19.34)PR 0 0 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 504.932983398438 3 352.157011 1053.4492 43177.6601379191 0.46629 0.00016421 433830 152.78 433830 152.78 504.932445411537 26.676 0.72845 26.676 26.423 27.152 0 63 24 4 0.99512531713472 0.00912727575455551 0.0847624638850423 0.012029 1 5918 86.996 47.73 4 202940000 23526 21900 22282 22104 8252.1 20869 9864.3 17710 21114 2602.8 22257 20690 22340 22663 9236.1 20939 10272 17965 20356 2860.7 1 1 1 1 1 1 1 1 1 1 914 315 810 858 1007 1007 4375 DSLIDSLT 8 Unmodified _DSLIDSLT_ 0 0 0 0 P56537 P56537 P56537 EIF6 Eukaryotic translation initiation factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 546.802368164063 2 432.221465 862.428378 43421.6041353813 1.4482 0.00062596 265100 114.58 265100 114.58 546.802342464017 87.354 0.41537 87.354 87.113 87.529 0 19 13 2 0.958159740907662 0.000635530546462015 0.014636684118003 0.015172 1 20396 95.62 87.949 1 5898600 2806.3 3044.5 3161 2824.3 2563.4 3554.1 2626.8 3398 3639.4 4044.4 2656.8 2874.8 3155.3 2925 2638.4 3535.6 2698.5 3536.4 3548 3886.9 1 1 1 1 1 1 1 1 1 1 915 731 811 859 1008 1008 DSLITPHVSR 10 Phospho (STY) _DSLITPHVS(ph)R_ DSLITPHVS(1)R DS(-73.56)LIT(-40.32)PHVS(40.32)R 0 0 1 0 P49792;Q7Z3J3;P0DJD0;P0DJD1;A6NKT7;Q99666;O14715 P49792 P49792 RANBP2;RGPD4;RGPD1;RGPD2;RGPD3;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 478.583343505859 3 402.195577 1203.5649 45383.095788202 0.24961 0.00010039 189930 76.388 189930 76.388 478.583169119634 53.253 0.53313 53.253 53.092 53.625 0 40 17 3 0.775583394903265 0.00089843114146361 0.00760291011007111 0.0047346 1 12452 86.699 70.227 3 13654000 5938.4 5322.9 6162.1 5237.1 4891.4 6218.3 4532.3 5051.2 6198.1 1600.1 5620.1 5027.9 6175.8 5398.3 5035.3 6177.5 4676.4 5160.2 6045 1623.6 1 1 1 1 1 1 1 1 1 1 916 655 812 860 1009 1009 1094 DSLLDGHFVLATLSDTDSHSQDLGSPER 28 Phospho (STY) _DSLLDGHFVLATLSDTDSHSQDLGS(ph)PER_ DSLLDGHFVLATLSDTDSHSQDLGS(1)PER DS(-310.39)LLDGHFVLAT(-201.33)LS(-169.08)DT(-130.29)DS(-109.54)HS(-64.24)QDLGS(64.24)PER 0 0 1 0 Q99638 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 831.394104003906 4 773.851568 3091.37717 34710.1855806233 1.7345 0.0013423 74033 57.29 74034 57.292 831.392510447834 97.884 1.0428 97.884 97.531 98.574 1.4211E-14 148 35 6 0.709930333868143 0.00264856609503677 0.0228897624998203 3.7381E-44 2 22700 344.01 331.66 7 46456000 6750.7 10280 7382.4 10312 8527.2 8216.8 7745 9798.6 9028.5 47740 6390.2 9711.6 7409.9 10553 8576 8439.4 7956.4 11206 8854 45180 2 2 2 2 2 2 2 2 2 2 917 1779 813 861 1010;1011 1010 3280 DSLLQDGEFSMDLR 14 Unmodified _DSLLQDGEFSMDLR_ 0 0 0 0 P07737 P07737 P07737 PFN1 Profilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.309875488281 3 542.587372 1624.74029 40112.7331461701 1.2828 0.00069604 140780 76.387 140780 76.388 618.974874037308 90.868 1.347 90.868 90.533 91.88 1.4211E-14 123 46 5 0.983534479404505 0.00318044091671716 0.0705108038020901 2.3144E-07 1 21136 167.32 146.55 1 64236000 3550.8 3857 3604.7 2994.5 3605.6 4034 2857.2 3568.9 3449.1 9184.4 3360.1 3638.6 3625.3 3144 3648.9 4008.5 2960.5 3874.7 3378.1 8730.8 1 1 1 1 1 1 1 1 1 1 918 321 814 862 1012 1012 DSNAPKSPLTGYVR 14 Phospho (STY) _DSNAPKS(ph)PLTGYVR_ DSNAPKS(0.998)PLT(0.002)GYVR DS(-53.73)NAPKS(26.32)PLT(-26.32)GY(-100.34)VR 0 0 1 1 Q9NP66 Q9NP66 Q9NP66 HMG20A High mobility group protein 20A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.694641113281 3 528.918772 1583.73449 37539.7322979873 1.5663 0.00082846 288840 152.78 288850 152.78 682.028281766124 56.982 0.75724 56.982 56.664 57.422 0 97 25 6 0.86075349499799 0.0140951869010142 0.0687317436727835 3.6441E-11 2 13303 206.63 179.29 4 192350000 69783 127650 71106 124670 115310 68167 125990 106890 138980 17647 66038 120570 72085 127280 114570 71368 128090 106250 136580 19090 2 2 2 2 2 2 2 2 2 2 919 1995 815 863 1013;1014 1014 3620 DSPSKSSAEAQTPEDTPNK 19 Phospho (STY) _DSPSKSS(ph)AEAQTPEDTPNK_ DSPS(0.055)KS(0.179)S(0.765)AEAQTPEDTPNK DS(-33.3)PS(-11.4)KS(-6.3)S(6.3)AEAQT(-35.51)PEDT(-108.18)PNK 0 0 1 1 O43493 O43493 O43493 TGOLN2 Trans-Golgi network integral membrane protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 919.793395996094 3 690.295072 2067.86339 33429.7077502621 1.7105 0.0011807 331980 229.16 331980 229.16 919.793003806967 41.02 0.33866 41.02 40.857 41.195 7.1054E-15 20 11 2 0.418361832576658 0.00102521871878338 0.0285798423651956 1.7772E-09 1 9362 175.71 155.96 6 13280000 25485 7542.5 28783 7629.4 7664.9 29855 6487.9 16219 7938.1 4759.8 24127 7125.7 28532 8185.5 9010 28771 6700.4 16940 7771 4857.3 1 1 1 1 1 1 1 1 1 1 920 115 816 864 1015 1015 200 DSPTLSNSGIR 11 Phospho (STY) _DS(ph)PTLSNSGIR_ DS(1)PTLSNSGIR DS(39.24)PT(-39.24)LS(-91.63)NS(-95.26)GIR 0 0 1 0 Q9HD20 Q9HD20 Q9HD20 ATP13A1 Manganese-transporting ATPase 13A1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.358215332031 2 613.774274 1225.534 37412.6655985644 2.3213 0.0014247 186680 114.58 186690 114.58 728.356678160658 46.009 0.821 46.009 45.643 46.464 0 47 27 2 0.556386724249081 0.000925107322239338 0.0455231961735867 4.1099E-10 1 10622 189.8 160.41 4 14131000 26494 22516 26631 25522 25569 31409 24647 25843 22611 8481.8 25071 21287 26793 26116 25995 31166 25077 26394 22397 8584.7 1 1 1 1 1 1 1 1 1 1 921 1993 817 865 1016 1016 3618 DSQDASAEQSDHDDEVASLASASGGFGTK 29 Phospho (STY) _DSQDASAEQS(ph)DHDDEVASLASASGGFGTK_ DSQDAS(0.017)AEQS(0.983)DHDDEVASLASASGGFGTK DS(-35.08)QDAS(-17.68)AEQS(17.68)DHDDEVAS(-101.4)LAS(-162.5)AS(-170.38)GGFGT(-198.13)K 0 0 1 0 Q6P2E9 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 856.137756347656 4 741.301908 2961.17853 33915.7022749938 1.8459 0.0013684 154570 114.58 154570 114.58 856.134909708442 72.19 0.85477 72.19 71.867 72.721 0 72 28 5 0.691910354710519 0.00160990854982869 0.0116765910754767 2.1842E-12 1 16933 205.53 159.59 7 14606000 5245 7835 6388.9 9751.3 5687 6746.8 7216.8 7426.2 7005.8 20875 4967.4 7412.4 6361.8 9847.1 5834.1 6944.6 7266.8 8051.7 6921.5 19828 1 1 1 1 1 1 1 1 1 1 922 1258 818 866 1017 1017 2231 DSSESQLASTESDKPTTGR 19 Phospho (STY) _DSS(ph)ESQLASTESDKPTTGR_ DS(0.009)S(0.99)ES(0.001)QLASTESDKPTTGR DS(-20.56)S(20.56)ES(-28.67)QLAS(-89.08)T(-106.56)ES(-132.9)DKPT(-171)T(-174.71)GR 0 0 1 1 Q96B23 Q96B23 Q96B23 C18orf25 Uncharacterized protein C18orf25 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.407287597656 3 692.630344 2074.8692 34510.7070575223 1.8522 0.0012829 220570 152.78 220580 152.78 845.740304462102 42.614 0.34155 42.614 42.425 42.766 0 33 11 4 0.610281573594671 0.00115643943563013 0.00885559566384872 1.8113E-11 1 9739 203.29 188.98 8 10993000 14667 16940 14755 16872 20844 15179 19884 16738 17788 4736.3 13879 16002 14925 17301 20778 15319 20229 16872 17641 4847.2 1 1 1 1 1 1 1 1 1 1 923 1652 819 867 1018 1018 3046 DSSKGEDSAEETEAK 15 Phospho (STY) _DSSKGEDS(ph)AEETEAK_ DS(0.002)S(0.002)KGEDS(0.996)AEETEAK DS(-27.35)S(-28.03)KGEDS(27.35)AEET(-39.38)EAK 0 0 1 1 Q12906 Q12906 Q12906 ILF3 Interleukin enhancer-binding factor 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.38427734375 3 554.884121 1661.63053 35482.1772770912 1.8163 0.0010078 412990 229.16 412990 229.16 784.38042752975 35.284 0.38351 35.284 35.092 35.475 0 19 12 2 0.951602330396067 0.000547034014732802 0.0148411059062177 0.00015321 1 7943 104.06 77.582 4 9968000 10840 10178 11795 11115 11063 11134 14299 11332 11289 4952.2 10261 9620.3 11819 11356 11313 11171 14318 11509 11267 4925.4 1 1 1 1 1 1 1 1 1 1 924 912 820 868 1019 1019 1505 DSSVPGSPSSIVAK 14 Phospho (STY) _DSSVPGS(ph)PSSIVAK_ DSSVPGS(0.995)PS(0.004)SIVAK DS(-38.51)S(-38.51)VPGS(23.46)PS(-23.46)S(-39.81)IVAK 0 0 1 0 Q08495 Q08495 Q08495 DMTN Dematin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 623.99853515625 3 470.88859 1409.64394 40045.549667831 1.7071 0.00080386 324440 152.78 324440 152.78 623.664404433074 64.908 0.74971 64.908 64.564 65.314 0 63 25 3 0.98187042203948 0.00181774164102222 0.0146987216894337 0.0018563 1 15261 96.666 72.815 5 12793000 4635.3 9739.1 5699 9956.8 8624.4 5236 7902.3 8610.9 10855 3933.4 4390.2 9201.4 5711.9 10134 8571.9 5508.7 8159.4 8625.1 10586 3903 1 1 1 1 1 1 1 1 1 1 925 889 821 869 1020 1020 1447 DSYVGDEAQSK 11 Unmodified _DSYVGDEAQSK_ 0 0 0 0 P60709;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.928466796875 2 599.764757 1197.51496 34647.0636808494 2.3649 0.0014184 382090 229.16 382090 229.17 828.928344622852 42.512 0.45579 42.512 42.253 42.708 7.1054E-15 53 15 4 0.672654561310145 0.00150053562766134 0.0829607688131201 8.2444E-10 1 9686 198.62 126.93 1 50038000 59459 22757 58981 21527 38061 57953 45240 45179 22672 25949 56261 21491 59175 22763 39940 56352 45088 46595 23328 25480 1 1 1 1 1 1 1 1 1 1 926 742;783;766 822 870 1021 1021 DTCIQSPSKECQK 13 Phospho (STY) _DTCIQS(ph)PSKECQK_ DTCIQS(0.905)PS(0.095)KECQK DT(-58.24)CIQS(9.8)PS(-9.8)KECQK 0 0 1 1 Q03188 Q03188 Q03188 CENPC Centromere protein C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.395080566406 3 554.2284 1659.66337 35094.7194374004 2.1236 0.001177 413480 229.16 413490 229.17 783.393240334354 42.235 0.45939 42.235 41.994 42.453 0 55 15 4 0.534606286441397 0.00226950403864271 0.0354978556330227 1.9708E-07 1 9636 164.62 131.32 3 30196000 41754 57255 44135 54574 39361 46024 40096 49176 64729 106790 39519 54072 44247 56061 40259 46755 41454 52423 62823 101690 1 1 1 1 1 1 1 1 1 1 927 858 823 871 1022 1022 1385 DTEEPLPVKESDQTLAALLSPK 22 Phospho (STY) _DTEEPLPVKESDQTLAALLS(ph)PK_ DTEEPLPVKESDQTLAALLS(1)PK DT(-49.15)EEPLPVKES(-39.89)DQT(-34.81)LAALLS(34.81)PK 0 0 1 1 P18583 P18583 P18583 SON Protein SON MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.433898925781 4 616.058193 2460.20367 37226.9651543686 1.8369 0.0011317 278990 171.87 278990 171.87 788.432825796684 99.793 0.17187 99.793 99.72 99.892 1.4211E-14 15 5 4 0.409961926442134 0.000176606868172029 0.0073538578517783 0.032208 1 23242 56.688 39.319 4 24783000 6915.1 7775.6 7436.4 7661.1 6080.3 9022 6982.3 7782 8567.5 22218 6545.4 7344.6 7443.2 7895.1 6264.6 9008.8 7107.5 8523.4 8386.3 21101 1 1 1 1 1 1 1 1 1 1 928 428 824 872 1023 1023 688 DTIIDVVGAPLTPNSR 16 Phospho (STY) _DTIIDVVGAPLT(ph)PNSR_ DTIIDVVGAPLT(0.992)PNS(0.008)R DT(-118.15)IIDVVGAPLT(21.19)PNS(-21.19)R 0 0 1 0 Q9NPF5 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.68017578125 3 583.292386 1746.85533 38627.2529874318 2.1696 0.0012655 130960 76.387 130960 76.389 659.679855837017 90.108 0.92979 90.108 89.72 90.65 0 114 31 5 0.986843067803974 0.00509217021777393 0.100555578583114 7.3763E-07 1 20953 147.28 133.31 3 108200000 3069.4 3721.3 2989.2 3165.7 3033.8 3693.6 3020.3 3384.8 3639 7069.6 2904.2 3512.2 3015.1 3292.9 3076.4 3688.1 3092 3620.2 3564.3 6735.2 1 1 1 1 1 1 1 1 1 1 929 1996 825 873 1024 1024 4775 DTLLALHQHGHSGPFESK 18 Phospho (STY) _DTLLALHQHGHS(ph)GPFESK_ DTLLALHQHGHS(1)GPFESK DT(-155.26)LLALHQHGHS(73.1)GPFES(-73.1)K 0 0 1 0 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.076232910156 4 514.24274 2052.94185 40072.4180701392 1.574 0.00080939 222820 114.58 222820 114.58 629.074874639561 65.228 1.8427 65.228 64.446 66.288 0 208 62 5 0.955323661847652 0.00546755954563723 0.141083503450389 5.0293E-16 1 15321 224.53 193.06 3 36816000 15007 3957.3 19400 4954.8 4947.2 23058 6218.6 10309 3513.7 6397.9 14217 3744 19107 5317.4 5889.2 22156 6194.9 11028 3581.7 6263 1 1 1 1 1 1 1 1 1 1 930 1350 826 874 1025 1025 2439 DTLRTPPRER 10 Phospho (STY) _DTLRT(ph)PPRER_ DT(0.001)LRT(0.999)PPRER DT(-29.16)LRT(29.16)PPRER 0 0 1 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 388.206726074219 4 330.915955 1319.63471 50265.9122671901 0.15645 5.1772E-05 173130 57.291 173130 57.291 388.206664503307 28.862 1.1247 28.862 27.981 29.106 0 121 38 5 0.997299051476858 0.0165478765282599 0.165851144029726 0.0064794 1 6417 85.45 63.893 2 99936000 30916 30625 29733 25242 20934 35095 20235 25658 31817 1565.9 29250 28900 29899 26405 21765 34622 20948 26150 30903 2068.4 1 1 1 1 1 1 1 1 1 1 931 2226 827 875 1026 1026 4823 DTPTSAGPNSFNK 13 Phospho (STY) _DTPTSAGPNS(ph)FNK_ DTPTSAGPNS(1)FNK DT(-94.45)PT(-89.19)S(-85.16)AGPNS(85.16)FNK 0 0 1 0 Q8WW12 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.309143066406 3 472.532806 1414.57659 34890.3440853789 1.3169 0.00062228 323310 152.78 323310 152.78 625.307950933028 50.169 0.43953 50.169 49.954 50.394 0 23 14 2 0.971036620929453 0.00495114005596276 0.0347317649854064 6.1116E-05 1 11657 125.41 114.5 4 77014000 22344 21635 22397 23692 14277 25362 15255 20880 23115 4447.9 21144 20449 22452 24228 14989 25300 15697 21252 22474 4671.4 1 1 1 1 1 1 1 1 1 1 932 1574 828 876 1027 1027 2887 DTQSPSTCSEGLLGWSQK 18 Phospho (STY) _DTQS(ph)PSTCSEGLLGWSQK_ DT(0.082)QS(0.646)PS(0.165)T(0.106)CS(0.001)EGLLGWSQK DT(-8.97)QS(5.93)PS(-5.93)T(-7.86)CS(-29.31)EGLLGWS(-85.41)QK 0 0 1 0 Q9C0C2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.401672363281 3 687.625877 2059.8558 34609.8976148841 1.8182 0.0012502 222180 152.78 222180 152.78 840.400776839523 84.443 0.50589 84.443 84.187 84.692 0 47 17 4 0.780809358684767 0.00209679066783205 0.0403255500991757 0.00068729 1 19743 99.666 77.036 6 9106200 10047 10678 10272 11294 5892.3 10095 6847.9 10655 10686 17519 9507.8 10091 10278 11539 6255.2 10213 7029.8 11194 10381 16743 1 1 1 1 1 1 1 1 1 1 933 1885 829 877 1028 1028 3431 DTSATSQSVNGSPQAEQPSLESTSK 25 Phospho (STY) _DTSATSQSVNGS(ph)PQAEQPSLESTSK_ DTSATSQS(0.001)VNGS(0.999)PQAEQPSLESTSK DT(-70)S(-69.78)AT(-54.61)S(-46.24)QS(-28.66)VNGS(28.66)PQAEQPS(-174.7)LES(-189.49)T(-192.64)S(-195.76)K 0 0 1 0 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1025.82604980469 3 872.715136 2615.12358 31002.1841351591 1.3255 0.0011568 175060 152.78 175060 152.78 1025.82488468573 50.31 0.51831 50.31 50.099 50.618 0 64 17 5 0.990745062682915 0.00449718009709768 0.037458798130671 1.0733E-24 1 11698 269.81 246.76 10 45019000 7888.3 13215 8695.5 13793 9217.5 9075.1 9414.2 11365 15054 8804.6 7467.4 12487 8716.2 14051 9331.2 9352.3 9727.8 11576 14614 8553.6 1 1 1 1 1 1 1 1 1 1 934 1387 830 878 1029 1029 2515 DTSLDFRPVVSPANGVEGVR 20 Phospho (STY) _DTSLDFRPVVS(ph)PANGVEGVR_ DT(0.002)S(0.003)LDFRPVVS(0.995)PANGVEGVR DT(-28.05)S(-25.04)LDFRPVVS(25.04)PANGVEGVR 0 0 1 1 Q8ND24 Q8ND24 Q8ND24 RNF214 RING finger protein 214 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.739013671875 3 732.354597 2194.04196 NaN NaN NaN NaN NaN NaN NaN NaN 77.065 1 77.065 76.565 77.565 0 NaN NaN NaN 0.0031286 1 18075 97.691 57.512 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 935 1500 831 879 1030 1030 2753 DTSPSSGSAVSSSK 14 Phospho (STY) _DTS(ph)PSSGSAVSSSK_ DTS(1)PSSGSAVSSSK DT(-39.21)S(39.21)PS(-39.21)S(-58.22)GS(-102.16)AVS(-157.5)S(-183.21)S(-202.54)K 0 0 1 0 Q8NEY8 Q8NEY8 Q8NEY8 PPHLN1 Periphilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 917.946166992188 2 688.782493 1375.55043 32167.8443900695 1.9462 0.0013405 332710 229.16 332710 229.16 917.946006695107 35.346 0.55974 35.346 35.092 35.651 -7.1054E-15 71 18 5 0.991703590115152 0.00295454929832312 0.0923929970502147 4.333E-42 1 7915 355.75 286.03 8 170280000 34883 28590 37671 25301 34990 35324 43219 37810 29751 1752.5 33019 26989 37755 26341 35770 34994 43229 37883 29927 2525.3 1 1 1 1 1 1 1 1 1 1 936 1518 832 880 1031 1031 2785;4688 DTSSSPTTGSTVQSVDLIFTR 21 Phospho (STY) _DTSS(ph)SPTTGSTVQSVDLIFTR_ DT(0.103)S(0.087)S(0.347)S(0.347)PT(0.111)T(0.004)GSTVQSVDLIFTR DT(-5.29)S(-6)S(0)S(0)PT(-4.96)T(-19.06)GS(-29.26)T(-36.54)VQS(-63.04)VDLIFT(-81.17)R 0 0 1 0 P57060 P57060 P57060 RWDD2B RWD domain-containing protein 2B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.080932617188 3 760.35281 2278.0366 35701.5773046719 1.9623 0.0014921 100470 76.39 100470 76.391 837.076019047806 92.76 0.54782 92.76 92.424 92.972 0 43 18 4 0.818482605051786 0.00179729717052959 0.0253083410686542 0.0066441 1 21598 83.934 70.516 10 9127800 2706.9 3300.9 3192.4 3372.7 4486.2 3354.1 3336.3 3343.6 4357.6 25656 2563.2 3118.6 3200.3 3458.3 4461 3411 3479.2 4127.3 4256.3 24236 1 1 1 1 1 1 1 1 1 1 937 732 833 881 1032 1032 1215;1216 DVAFTVGEGEDHDIPIGIDK 20 Unmodified _DVAFTVGEGEDHDIPIGIDK_ 0 0 0 0 Q13451 Q13451 Q13451 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.459106445313 3 709.679536 2126.01678 35156.6837524829 1.5958 0.0011325 215270 152.78 215270 152.78 862.788968554245 85.179 0.43266 85.179 84.924 85.357 0 44 14 5 0.742744926479303 0.00242900699211976 0.0530370100675866 1.1817E-07 1 19878 151.87 124.53 1 11486000 6834.4 8473.5 6525.1 8748.9 8512.8 6168.6 7356.9 9491.1 9240.9 22292 6465.9 8006.2 6610.3 8924.9 8506.9 6381.9 7595.8 10063 9038.1 21211 1 1 1 1 1 1 1 1 1 1 938 957 834 882 1033 1033 DVATSPISPTENNTTPPDALTR 22 Phospho (STY) _DVATSPISPTENNTT(ph)PPDALTR_ DVATSPISPTENNT(0.06)T(0.94)PPDALTR DVAT(-171.64)S(-164.84)PIS(-129.96)PT(-99.68)ENNT(-11.94)T(11.94)PPDALT(-51.36)R 0 0 1 0 Q13153 Q13153 Q13153 PAK1 Serine/threonine-protein kinase PAK 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.760559082031 3 793.035481 2376.08461 33510.4479733643 1.6728 0.0013266 96323 76.388 96325 76.389 869.758161346062 66.885 0.74748 66.885 66.432 67.18 0 81 25 5 0.927344711872474 0.00341315208005317 0.0746956595233724 1.0519E-16 1 15689 224.03 194.03 7 17204000 4953.9 3679.4 5462.7 3082.4 6433.2 5763.3 5950.9 5789.4 3032.2 14528 4689.6 3472.4 5482.4 3244.4 6461.5 5684.8 6000.8 6243.9 3115.6 13813 1 1 1 1 1 1 1 1 1 1 939 931 835 883 1034 1034 4527 DVDELPSLQPSVGSPSRPSSSR 22 Phospho (STY) _DVDELPSLQPS(ph)VGSPSRPSSSR_ DVDELPSLQPS(0.854)VGS(0.142)PS(0.004)RPSSSR DVDELPS(-66.05)LQPS(7.79)VGS(-7.79)PS(-23.38)RPS(-51.32)S(-51.32)S(-49.76)R 0 0 1 1 O43815 O43815 O43815 STRN Striatin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.7626953125 3 793.039226 2376.09585 33090.6109067609 1.744 0.001383 96323 76.388 96325 76.39 869.761500833666 67.994 0.59818 67.994 67.645 68.243 0 64 19 4 0.89685231923594 0.00311427887099621 0.0295405035752875 7.6027E-08 1 15941 139.73 117.53 7 16687000 5295.7 8041 6323.8 7563 6339.1 6424.2 7010.6 8166.2 9002.1 13812 5014.9 7593.4 6310 7776.4 6443.4 6538 7158.5 8539.9 8797.9 13194 1 1 1 1 1 1 1 1 1 1 940 130 836 884 1035 1035 227 DVDSEISDLENEVENK 16 Unmodified _DVDSEISDLENEVENK_ 0 0 0 0 Q96SB8 Q96SB8 Q96SB8 SMC6 Structural maintenance of chromosomes protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.38720703125 3 612.277809 1833.8116 37402.5843589682 1.9958 0.001222 249520 152.77 249520 152.78 765.386329189119 98.084 0.38005 98.084 97.876 98.256 0 23 12 3 0.554841691960661 0.000817665674830945 0.0361849525172548 9.0988E-05 1 22779 115.82 80.466 1 5473900 4856.6 4106.9 4859.3 4792.6 3825.8 4671.9 4042.3 5410 4940.3 25520 4595.6 3883.6 4880.6 4877.1 3947.4 4745.6 4128.9 6167 4836.5 24155 1 1 1 1 1 1 1 1 1 1 941 1748 837 885 1036 1036 DVEFEVVGDAPEK 13 Unmodified _DVEFEVVGDAPEK_ 0 0 0 0 Q9UBT2 Q9UBT2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.340942382813 3 478.564673 1432.67219 40581.7762696403 1.5079 0.00072164 319240 152.78 319240 152.78 631.340075063684 76.01 0.3521 76.01 75.803 76.156 0 20 11 2 0.954161834242957 0.000646085322997429 0.0143101666705142 0.0032708 1 17841 93.348 67.229 1 6081700 5231 7063.4 6371.5 6751.3 6761.4 5487.8 7019.4 6430.7 7004.8 5188.2 4954.1 6670.7 6355.4 6930.7 6842.1 5578.7 7132.3 6570.3 6912.3 5034.1 1 1 1 1 1 1 1 1 1 1 942 2129 838 886 1037 1037 DVESPSWR 8 Phospho (STY) _DVES(ph)PSWR_ DVES(0.999)PS(0.001)WR DVES(28.7)PS(-28.7)WR 0 0 1 0 O00159 O00159 O00159 MYO1C Unconventional myosin-Ic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.796691894531 2 528.213321 1054.41209 40751.6333099813 0.93472 0.00049373 216920 114.58 216920 114.58 642.794600172913 52.045 0.54502 52.045 51.806 52.351 -7.1054E-15 28 18 2 0.629834873180826 0.000720728146026821 0.0113202873693256 0.0009793 1 12105 115.82 74.282 2 11498000 19824 17064 22369 17677 11786 20333 11234 16927 19154 5133.9 18768 16123 22247 18155 12585 20229 11679 17266 18563 5225.9 1 1 1 1 1 1 1 1 1 1 943 33 839 887 1038 1038 56 DVNSSSPVMLAFK 13 Phospho (STY) _DVNSSS(ph)PVMLAFK_ DVNS(0.021)S(0.105)S(0.874)PVMLAFK DVNS(-16.14)S(-9.22)S(9.22)PVMLAFK 0 0 1 0 Q99598 Q99598 Q99598 TSNAX Translin-associated protein X MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.337646484375 3 492.226437 1473.65748 38033.9993629315 2.1427 0.0010547 310380 152.78 310380 152.78 645.001603731147 89.756 0.49442 89.756 89.519 90.014 1.4211E-14 45 16 4 0.976590049124671 0.0018088195783664 0.0147482036842043 0.00014265 1 20914 107.5 79.169 3 10166000 5687.7 7091.5 6734.4 8224.6 4839.9 5686.4 5488 6695.3 7176.4 8093.7 5386 6705.5 6699 8334.8 5034.2 5840.9 5601.4 6920.6 7009.3 7776.2 1 1 1 1 1 1 1 1 1 1 944 1776 840 888 1039 1039 3276 DVQGTDASLDEELDR 15 Unmodified _DVQGTDASLDEELDR_ 0 0 0 0 Q9UJZ1 Q9UJZ1 Q9UJZ1 STOML2 Stomatin-like protein 2, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 946.459167480469 2 831.876295 1661.73804 31866.4714679285 1.583 0.0013169 137740 114.58 137740 114.58 946.459309627286 59.508 0.65889 59.508 59.278 59.937 0 49 22 4 0.787212277515992 0.00110820646135116 0.0372433883938858 2.5865E-41 1 13929 344.54 270.76 1 20213000 13850 13467 13318 16309 14996 14412 14227 15747 15708 10772 13104 12738 13460 16541 15110 14567 14560 16069 15437 10508 1 1 1 1 1 1 1 1 1 1 945 2165 841 889 1040 1040 DVSGFSDPYCLLGIEQGVGVPGGSPGSR 28 Phospho (STY) _DVSGFSDPYCLLGIEQGVGVPGGS(ph)PGSR_ DVSGFSDPYCLLGIEQGVGVPGGS(0.861)PGS(0.139)R DVS(-152.99)GFS(-144.48)DPY(-147.49)CLLGIEQGVGVPGGS(7.91)PGS(-7.91)R 0 0 1 0 Q70J99 Q70J99 Q70J99 UNC13D Protein unc-13 homolog D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1039.82800292969 3 963.103789 2886.28954 30227.4771226395 1.1614 0.0011186 79315 76.388 79316 76.389 1039.82654192308 100.77 0.45399 100.77 100.62 101.07 0 63 15 6 0.994952988018446 0.0921335439951767 1 1.1554E-17 1 23602 218.25 206.6 5 1388300000 11356 54706 35036 15714 54975 28916 86170 69857 47614 138860 10834 51456 34221 18727 55016 29170 85160 72669 48616 132370 1 1 1 1 1 1 1 1 1 1 946 1307 842 890 1041 1041 2333 DVTLSPVK 8 Phospho (STY) _DVTLS(ph)PVK_ DVT(0.003)LS(0.997)PVK DVT(-25.62)LS(25.62)PVK 0 0 1 0 Q8NFC6 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.897094726563 2 469.733358 937.452164 41286.8020073139 2.3178 0.0010888 487860 229.16 487860 229.16 698.896158969786 66.543 0.43111 66.543 66.316 66.747 0 32 14 3 0.823451174310721 0.000893711465156572 0.0336662975976461 0.015484 1 15655 76.068 37.501 2 12888000 16747 15411 17393 14509 14694 16934 14544 15109 17912 11351 15850 14554 17443 14991 15072 16864 14904 15568 17531 11038 1 1 1 1 1 1 1 1 1 1 947 1521 843 891 1042 1042 2795 DVTNFTVGGFAPMSPR 16 Oxidation (M),Phospho (STY) _DVTNFTVGGFAPM(ox)S(ph)PR_ DVTNFTVGGFAPM(1)SPR DVTNFTVGGFAPMS(1)PR DVTNFTVGGFAPM(99.96)SPR DVT(-79.89)NFT(-63.44)VGGFAPMS(63.44)PR 0 1 1 0 O00267 O00267 O00267 SUPT5H Transcription elongation factor SPT5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.654174804688 3 597.930572 1790.76989 38392.0131976393 1.9176 0.0011466 127750 76.387 127750 76.389 674.652337899386 82.179 0.66217 82.179 81.824 82.486 0 85 22 5 0.971273439825194 0.00578455024695407 0.150839982706485 0.00066394 1 19192 99.964 86.247 3 48192000 4267.1 4431.7 4049.1 4819.8 4591.5 4799.7 4698.5 5205.4 4813.6 7892.5 4037 4188.7 4096.6 4924.8 4629 4831.8 4780.7 5443.5 4744.7 7552.2 1 1 1 1 1 1 1 1 1 1 948 39 844 892 1043 1043 4 62 DVTNFTVGGFAPMSPR 16 Phospho (STY) _DVTNFTVGGFAPMS(ph)PR_ DVTNFTVGGFAPMS(1)PR DVT(-99.1)NFT(-79.37)VGGFAPMS(79.37)PR 0 0 1 0 O00267 O00267 O00267 SUPT5H Transcription elongation factor SPT5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.98681640625 3 592.598934 1774.77497 38052.4145282783 1.7006 0.0010078 128900 76.387 128900 76.388 669.320705632647 90.91 0.69167 90.91 90.561 91.253 -1.4211E-14 88 23 5 0.772149739660645 0.00200897556337505 0.0568877603483623 5.7883E-07 1 21137 140.51 124.99 3 50270000 6725.3 7868.6 6699.1 10486 7483.8 5912.4 6342 6383.1 11481 8328.2 6363.8 7448.1 6754.6 10533 7537 6152 6651.2 6635.4 11110 7989.8 1 1 1 1 1 1 1 1 1 1 949 39 844 893 1044 1044 62 DVTPPPETEVVLIK 14 Phospho (STY) _DVT(ph)PPPETEVVLIK_ DVT(1)PPPETEVVLIK DVT(42.36)PPPET(-42.36)EVVLIK 0 0 1 0 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.387939453125 3 539.610945 1615.81101 38080.3867351056 2.1706 0.0011713 283120 152.78 283120 152.78 692.386640332011 90.391 1.3039 90.391 89.662 90.966 0 142 44 4 0.914132156985471 0.00264934357017349 0.066264393324245 7.2113E-07 2 20970 156.67 128.59 2 28008000 9009.4 13826 10830 16069 11375 11621 11644 13812 17208 39850 8532.1 13074 10807 16291 11520 11949 11992 14970 16743 37844 2 2 2 2 2 2 2 2 2 2 950 491 845 894 1045;1046 1045 4436 DVVLSTSPK 9 Phospho (STY) _DVVLST(ph)SPK_ DVVLS(0.001)T(0.925)S(0.074)PK DVVLS(-30.74)T(10.97)S(-10.97)PK 0 0 1 0 Q9P275 Q9P275 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.412780761719 2 513.249373 1024.48419 36728.8223823366 3.1434 0.0016133 446490 229.16 446500 229.16 742.411847902123 63.085 0.55551 63.085 62.817 63.372 0 47 18 4 0.856157706322694 0.00196156274248874 0.0481847159412906 8.4919E-06 1 14799 147.58 112.04 3 26460000 28013 22580 28756 24517 15228 26169 15593 22943 23186 9262.3 26510 21342 28748 25082 16265 26134 16063 23418 22556 9252.5 1 1 1 1 1 1 1 1 1 1 951 2103 846 895 1047 1047 4793 DVYLSPR 7 Phospho (STY) _DVYLS(ph)PR_ DVYLS(1)PR DVY(-59.87)LS(59.87)PR 0 0 1 0 Q96E39;P38159 Q96E39;P38159 P38159 RBMXL1;RBMX RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.791931152344 2 465.21005 928.405548 41033.7991937308 1.0573 0.00049187 246300 114.58 246300 114.58 579.792058168521 54.975 2.2825 54.975 54.5 56.783 0 205 77 5 0.944654546827154 0.0061489121665334 0.0611530535393036 0.011461 2 12759 85.764 26.396 2 2768700000 53299 66885 50731 70413 46646 46307 51548 53314 65419 8255.2 50425 63204 51190 71695 47660 47595 52616 53455 63961 9007.2 2 2 2 2 2 2 2 2 2 2 952 561;1669 847 896 1048;1049 1048 908 DVYLSPRDDGYSTK 14 Phospho (STY) _DVYLS(ph)PRDDGYSTK_ DVYLS(1)PRDDGYSTK DVY(-83.63)LS(82.11)PRDDGY(-89.71)S(-82.11)T(-88.44)K 0 0 1 1 Q96E39;P38159 Q96E39;P38159 P38159 RBMXL1;RBMX RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.024230957031 3 565.913575 1694.7189 36868.2802853544 1.8372 0.0010397 269960 152.78 269960 152.78 719.023302756947 61.681 2.1595 61.681 61.155 63.314 0 244 73 5 0.981144259979931 0.00650199599251969 0.118386423032978 5.4165E-07 2 14409 152.89 123.55 5 192530000 32349 44799 34153 45897 41993 34749 47359 42512 46217 31973 30617 42327 34392 46880 42227 35485 47919 43305 45651 31090 2 2 2 2 2 2 2 2 2 2 953 561;1669 848 897 1050;1051 1050 908 DWDDDQND 8 Unmodified _DWDDDQND_ 0 0 0 0 P50990 P50990 P50990 CCT8 T-complex protein 1 subunit theta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.252746582031 2 511.670325 1021.3261 39617.1241382113 2.1397 0.0010948 223940 114.58 223940 114.58 626.251855904947 46.047 1.0965 46.047 45.703 46.799 0 102 37 4 0.860265559678137 0.00277836821962307 0.0719442219702366 0.023718 1 10578 90.777 88.505 1 70408000 21404 22382 22372 22876 20879 21180 21444 20541 22343 5098.5 20257 21147 22455 23431 21285 21307 21826 20782 22008 5276.2 1 1 1 1 1 1 1 1 1 1 954 671 849 898 1052 1052 DWEDDSDEDMSNFDR 15 Unmodified _DWEDDSDEDMSNFDR_ 0 0 0 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1052.91345214844 2 938.334134 1874.65372 31350.0244640282 1.5895 0.0014915 122110 114.58 122110 114.58 1053.41627770564 67.621 0.49986 67.621 67.387 67.887 0 39 16 4 0.657284238836213 0.000935726040753576 0.0604917300895852 1.8836E-54 1 15872 398.14 366.26 1 11096000 13699 10727 12829 9627.2 10179 13313 10556 14078 11899 24979 12960 10127 12936 10011 10493 13236 10764 14844 11684 23847 1 1 1 1 1 1 1 1 1 1 955 1064 850 899 1053 1053 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(97.32)SNFDR DWEDDS(50.36)DEDMS(-50.36)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.270263671875 3 657.87893 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 58.91 1 58.91 58.41 59.41 0 NaN NaN NaN 0.003468 1 13804 97.32 86.631 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 956 1064 850 900 1054 1054 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(244.05)SNFDR DWEDDS(51.27)DEDMS(-51.27)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89965820313 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 59.587 1 59.587 59.087 60.087 0 NaN NaN NaN 1.7822E-19 1 13964 244.05 229.89 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 957 1064 850 900 1055 1055 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(224.55)SNFDR DWEDDS(56.09)DEDMS(-56.09)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89929199219 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 60.403 1 60.403 59.903 60.903 0 NaN NaN NaN 7.515E-19 1 14160 224.55 209.35 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 958 1064 850 900 1056 1056 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(254.56)SNFDR DWEDDS(91.36)DEDMS(-91.36)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89978027344 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 61.998 1 61.998 61.498 62.498 0 NaN NaN NaN 2.6565E-26 1 14554 254.56 240 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 959 1064 850 900 1057 1057 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(242.93)SNFDR DWEDDS(43.09)DEDMS(-43.09)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89733886719 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 62.814 1 62.814 62.314 63.314 0 NaN NaN NaN 2.1131E-19 1 14753 242.93 231.83 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 960 1064 850 900 1058 1058 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(233.78)SNFDR DWEDDS(48.79)DEDMS(-48.79)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89721679688 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 63.609 1 63.609 63.109 64.109 0 NaN NaN NaN 4.8013E-19 1 14937 233.78 218.24 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 961 1064 850 900 1059 1059 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(224.55)SNFDR DWEDDS(53.77)DEDMS(-53.77)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89916992188 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 64.419 1 64.419 63.919 64.919 0 NaN NaN NaN 7.515E-19 1 15132 224.55 209.01 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 962 1064 850 900 1060 1060 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(190.19)SNFDR DWEDDS(34.81)DEDMS(-34.81)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89685058594 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 65.681 1 65.681 65.181 66.181 0 NaN NaN NaN 3.0912E-13 1 15429 190.19 176.03 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 963 1064 850 900 1061 1061 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(179.66)SNFDR DWEDDS(33.38)DEDMS(-33.38)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89929199219 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 67.5 1 67.5 67 68 0 NaN NaN NaN 4.5314E-13 1 15850 179.66 165.85 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 964 1064 850 900 1062 1062 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(1)DEDMSNFDR DWEDDSDEDM(181.72)SNFDR DWEDDS(39.15)DEDMS(-39.15)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89916992188 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 69.263 1 69.263 68.763 69.763 0 NaN NaN NaN 4.2496E-13 1 16255 181.72 167.04 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 965 1064 850 900 1063 1063 136 1838 DWEDDSDEDMSNFDR 15 Oxidation (M),Phospho (STY) _DWEDDS(ph)DEDM(ox)SNFDR_ DWEDDSDEDM(1)SNFDR DWEDDS(0.996)DEDMS(0.004)NFDR DWEDDSDEDM(89.94)SNFDR DWEDDS(23.6)DEDMS(-23.6)NFDR 0 1 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.89697265625 2 986.314757 1970.61496 NaN NaN NaN NaN NaN NaN NaN NaN 71.284 1 71.284 70.784 71.784 0 NaN NaN NaN 0.011166 1 16731 89.936 79.178 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 966 1064 850 900 1064 1064 136 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(124.58)DEDMS(-124.58)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.89965820313 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 72.034 1 72.034 71.534 72.534 0 NaN NaN NaN 1.3581E-104 1 16904 485.63 438.43 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 967 1064 850 901 1065 1065 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(75.08)DEDMS(-75.08)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.935791015625 3 652.547292 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 72.125 1 72.125 71.625 72.625 0 NaN NaN NaN 0.00015141 1 16925 104.92 97.89 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 968 1064 850 901 1066 1066 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(133.67)DEDMS(-133.67)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.89929199219 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 72.826 1 72.826 72.326 73.326 0 NaN NaN NaN 3.9102E-89 1 17097 472.61 435.68 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 969 1064 850 901 1067 1067 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(105.39)DEDMS(-105.39)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.89965820313 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 75.193 1 75.193 74.693 75.693 0 NaN NaN NaN 1.4473E-88 1 17649 468.5 428.99 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 970 1064 850 901 1068 1068 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(135.42)DEDMS(-135.42)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.89965820313 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 77.562 1 77.562 77.062 78.062 0 NaN NaN NaN 6.3729E-89 1 18184 471.65 428.69 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 971 1064 850 901 1069 1069 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(107.73)DEDMS(-107.73)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.89953613281 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 78.367 1 78.367 77.867 78.867 0 NaN NaN NaN 2.9992E-88 1 18368 462.46 418.77 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 972 1064 850 901 1070 1070 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(84.09)DEDMS(-84.09)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.90148925781 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 79.958 1 79.958 79.458 80.458 0 NaN NaN NaN 9.5249E-73 1 18728 418.8 382.41 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 973 1064 850 901 1071 1071 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(70.89)DEDMS(-70.89)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.90368652344 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 80.753 1 80.753 80.253 81.253 0 NaN NaN NaN 1.4972E-27 1 18902 285.71 259.27 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 974 1064 850 901 1072 1072 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(119.65)DEDMS(-119.65)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.90124511719 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 81.573 1 81.573 81.073 82.073 0 NaN NaN NaN 5.0816E-88 1 19094 454.37 417.97 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 975 1064 850 901 1073 1073 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(49.89)DEDMS(-49.89)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.89807128906 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 83.166 1 83.166 82.666 83.666 0 NaN NaN NaN 6.6099E-46 1 19451 349.2 312.2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 976 1064 850 901 1074 1074 1838 DWEDDSDEDMSNFDR 15 Phospho (STY) _DWEDDS(ph)DEDMSNFDR_ DWEDDS(1)DEDMSNFDR DWEDDS(42.02)DEDMS(-42.02)NFDR 0 0 1 0 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.89440917969 2 978.3173 1954.62005 NaN NaN NaN NaN NaN NaN NaN NaN 87.065 1 87.065 86.565 87.565 0 NaN NaN NaN 1.032E-26 1 20316 275.42 238.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 977 1064 850 901 1075 1075 1838 DYDDMSPR 8 Oxidation (M),Phospho (STY) _DYDDM(ox)S(ph)PR_ DYDDM(1)SPR DYDDMS(1)PR DYDDM(106.4)SPR DY(-79.8)DDMS(79.8)PR 0 1 1 0 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.261413574219 2 547.678454 1093.34236 38222.5294972167 2.3113 0.0012658 209210 114.58 209210 114.58 662.259901688846 30.083 3.4498 30.083 29.778 33.228 3.5527E-15 293 116 5 0.94627405552817 0.00848462491367682 0.366701195866597 0.0011876 2 6687 106.4 83.046 2 188510000 60495 58451 59702 55152 34113 61549 35293 52752 59833 7224.3 57241 55197 59851 56932 36169 61311 36541 53473 57996 8023.5 2 2 2 2 2 2 2 2 2 2 978 752 851 902 1076;1077 1076 99 1238 DYDDMSPR 8 Phospho (STY) _DYDDMS(ph)PR_ DYDDMS(1)PR DY(-143.69)DDMS(143.69)PR 0 0 1 0 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.263671875 2 539.680997 1077.34744 38652.4070409076 1.9256 0.0010392 212310 114.58 212310 114.58 654.262548230406 41.324 4.4942 41.324 40.857 45.351 -7.1054E-15 469 155 6 0.992883384992101 0.0181065307038013 1 2.0854E-08 5 9385 183.95 168.32 2 662100000 267610 281280 271760 261450 167600 279510 181780 253950 283690 30673 253250 265600 272160 269950 176530 279100 187150 256640 275600 34759 5 5 5 5 5 5 5 5 5 5 979 752 851 903 1078;1079;1080;1081;1082 1078 1238 DYEEVGADSADGEDEGEEY 19 Unmodified _DYEEVGADSADGEDEGEEY_ 0 0 0 0 Q9BQE3 Q9BQE3 Q9BQE3 TUBA1C Tubulin alpha-1C chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1154.96228027344 2 1039.87708 2077.73961 28944.4395154412 1.2816 0.0013327 110190 114.58 110190 114.58 1154.95988780872 59.648 0.91805 59.648 59.218 60.136 7.1054E-15 138 31 6 0.991392614738006 0.00173948227365553 0.0505276604533571 5.3952E-22 1 13920 252.21 249.08 1 293580000 2746.8 7887.9 4041 7311.4 3120 3838 3978.9 5608.8 8725.5 15008 2604.1 7448.2 3985 7486.5 3237.2 4052.5 4138.9 6009.7 8408.1 14262 1 1 1 1 1 1 1 1 1 1 980 1805 852 904 1083 1083 DYEEVGVDSVEGEGEEEGEEY 21 Unmodified _DYEEVGVDSVEGEGEEEGEEY_ 0 0 0 0 P68363;Q71U36 P68363 P68363 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.3623046875 3 783.6398 2347.89757 33671.7272444809 1.6863 0.0013215 97479 76.388 97480 76.389 860.362022664734 73.027 2.0766 73.027 72.634 74.711 0 227 71 7 0.974438650823253 0.00500312382421087 0.0756485877403519 2.1441E-11 1 17085 139.88 134.04 1 606200000 6613.1 7738.2 8515.1 6776 10583 7596 9628.4 8587.1 10087 17966 6264.8 7304.5 8488.3 7029.3 10604 7623.5 9859.2 9116.5 9933 17116 1 1 1 1 1 1 1 1 1 1 981 789 853 905 1084 1084 DYEEVGVDSVEGEGEEEGEEY 21 Unmodified _DYEEVGVDSVEGEGEEEGEEY_ 0 0 0 0 P68363;Q71U36 P68363 P68363 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1290.03991699219 2 1174.95606 2347.89757 27673.0598105507 1.6467 0.0019348 97520 114.58 97521 114.58 1290.03916145293 73.006 2.1325 73.006 72.634 74.766 0 239 73 7 0.966025739991136 0.000570065604096378 0.0208632237531073 1.2864E-15 1 17285 215.77 205.44 1 465810000 1990 3620.7 2252.3 2598.5 2439.9 2506.5 2798.4 3467.1 4213.1 17739 1884.1 3414.5 2255.8 2729 2471.4 2561.9 2870.1 3975 4097.1 16784 1 1 1 1 1 1 1 1 1 1 982 789 853 905 1085 1085 DYFEEYGK 8 Unmodified _DYFEEYGK_ 0 0 0 0 P22626 P22626 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.889343261719 2 525.724372 1049.43419 35502.3515542003 2.4824 0.0013051 435900 229.16 435900 229.16 754.887145385545 69.342 0.3974 69.342 69.12 69.517 0 36 13 3 0.84906224766652 0.00151194169436401 0.0365789104932 0.00010713 1 16273 139.19 108.62 1 11211000 20531 24764 22463 22198 22090 22803 23885 25156 23983 12780 19434 23379 22507 22959 22465 22883 24229 25528 23660 12616 1 1 1 1 1 1 1 1 1 1 983 459 854 906 1086 1086 DYFEEYGKIDTIEIITDR 18 Unmodified _DYFEEYGKIDTIEIITDR_ 0 0 0 1 P22626 P22626 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 893.807312011719 3 740.695075 2219.06339 32378.326132369 1.3398 0.00099237 206260 152.78 206260 152.78 893.805701864055 99.222 0.17108 99.222 99.151 99.322 0 13 5 4 0.971162647470717 0.00162253783906962 0.0176386638472714 3.1218E-05 1 23050 132.14 100.63 1 28005000 11251 15901 13292 15313 19093 12779 20826 17969 16904 67965 10654 15018 13341 15718 19054 13115 21009 19871 16845 64413 1 1 1 1 1 1 1 1 1 1 984 459 855 907 1087 1087 EAAEMGK 7 Unmodified _EAAEMGK_ 0 0 0 0 Q5VTE0;P68104;Q05639 Q5VTE0 Q5VTE0 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.334716796875 2 368.170721 734.32689 40945.2827177769 2.2613 0.00083254 622440 229.16 622440 229.16 597.333623126704 38.798 0.35113 38.798 38.553 38.904 0 26 11 3 0.931318973387855 0.00130313006313314 0.0316926961986688 0.03045 1 8797 89.142 64.248 1 17543000 37701 33851 39177 33053 34465 38471 33188 36917 35489 4129.7 35681 31974 39304 34073 35238 38308 33907 37215 34919 4743 1 1 1 1 1 1 1 1 1 1 985 788 856 908 1088 1088 EAAEQDVEK 9 Unmodified _EAAEQDVEK_ 0 0 0 0 P26373 P26373 P26373 RPL13 60S ribosomal protein L13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.90087890625 2 509.738011 1017.46147 37502.9719557374 1.9408 0.0009893 449570 229.16 449570 229.16 738.900675915516 37.612 0.32113 37.612 37.508 37.829 0 19 10 2 0.982685262905193 0.00140100680569031 0.00990214110779899 1.7663E-05 1 8510 152.97 61.655 1 31187000 40211 37917 40048 37959 28987 39091 29507 35886 40559 3605 38050 35819 40201 38991 30087 39099 30313 36230 39551 4225.1 1 1 1 1 1 1 1 1 1 1 986 481 857 909 1089 1089 EAAFSPGQQDWSR 13 Phospho (STY) _EAAFSPGQQDWS(ph)R_ EAAFS(0.411)PGQQDWS(0.589)R EAAFS(-1.57)PGQQDWS(1.57)R 0 0 1 0 Q9C0C2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.402221679688 2 779.819745 1557.62494 32730.7013559243 1.7989 0.0014028 146930 114.58 146940 114.58 894.401702615832 63.677 0.66831 63.677 63.225 63.894 0 40 22 3 0.805563908522759 0.000425044544499919 0.00862017264862423 0.030522 1 14950 60.401 35.471 2 10647000 8606.2 14651 9177.5 22193 8411.6 9921.2 8950.8 8611.3 11426 24457 8145.8 13883 9200 22130 8591.3 10522 9153 9425.4 11169 23228 1 1 1 1 1 1 1 1 1 1 987 1885 858 910 1090 1090 3432 EAAGPAPSPMR 11 Phospho (STY) _EAAGPAPS(ph)PMR_ EAAGPAPS(1)PMR EAAGPAPS(106.11)PMR 0 0 1 0 Q12834 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.831237792969 2 582.249381 1162.48421 37653.2861023741 1.959 0.0011406 196790 114.58 196790 114.58 696.830474883526 38.869 0.47389 38.869 38.638 39.112 0 35 15 3 0.863524461443107 0.00117973015534663 0.0327453858662402 0.00025703 1 8806 106.11 72.88 1 16351000 19803 13990 21131 14559 12182 21490 12252 17547 14636 4004.5 18744 13219 21092 15025 12894 21189 12534 17874 14341 4176.9 1 1 1 1 1 1 1 1 1 1 988 905 859 911 1091 1091 1491 EAALPPVSPLK 11 Phospho (STY) _EAALPPVS(ph)PLK_ EAALPPVS(1)PLK EAALPPVS(138.55)PLK 0 0 1 0 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 553.988342285156 3 401.212457 1200.61554 41873.0945113835 1.6248 0.00065188 380780 152.78 380790 152.78 553.987815706831 76.674 1.9751 76.674 76.004 77.979 0 283 67 6 0.997784384187235 0.0291131388064734 0.145954925957171 1.488E-06 3 18062 138.55 114.48 1 221200000 37394 53476 40575 50411 14344 36962 16307 38013 67709 5832.5 35397 50500 40357 51732 16181 37674 17912 38265 64629 6371.7 3 3 3 3 3 3 3 3 3 3 989 861 860 912 1092;1093;1094 1093 1392 EAARSPDKPGGSPSASR 17 Phospho (STY) _EAARS(ph)PDKPGGSPSASR_ EAARS(0.997)PDKPGGS(0.003)PSASR EAARS(25.44)PDKPGGS(-25.44)PS(-37.93)AS(-35.98)R 0 0 1 2 Q9Y3T9 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.045593261719 3 583.935373 1748.78429 36588.7729660399 1.6224 0.00094738 261630 152.78 261630 152.78 736.710675944167 27.238 0.49248 27.238 27.002 27.494 -3.5527E-15 65 16 5 0.985446472517462 0.00366820007604543 0.0236955448982007 0.0082747 1 6042 87.509 53.811 4 104620000 11715 10798 13824 10791 9376.1 13717 10249 12046 13361 2568.7 11093 10200 13746 11127 9792.8 13603 10476 12225 13051 2697.5 1 1 1 1 1 1 1 1 1 1 990 2270 861 913 1095 1095 4201;4202;4203 EAARSPDKPGGSPSASR 17 2 Phospho (STY) _EAARS(ph)PDKPGGSPS(ph)ASR_ EAARS(1)PDKPGGS(0.236)PS(0.587)AS(0.177)R EAARS(66.97)PDKPGGS(-3.96)PS(3.96)AS(-5.21)R 0 0 2 2 Q9Y3T9 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.36572265625 3 610.590817 1828.75062 35737.1624965099 1.9564 0.0011946 250210 152.78 250210 152.78 763.700189570683 28.864 1.6396 28.864 28.523 30.163 0 196 55 5 0.935826461346303 0.00652546801844073 0.0433432378996604 8.6314E-05 2 6390 111.84 74.211 6 86867000 51256 35888 50539 36178 19471 50712 23434 43015 40651 10122 48498 33904 50559 37362 21666 50105 24135 43751 39380 10527 2 2 2 2 2 2 2 2 2 2 991 2270 861 914 1096;1097 1096 4201;4202;4203 EAASGTTPQK 10 Phospho (STY) _EAASGTT(ph)PQK_ EAASGT(0.021)T(0.979)PQK EAAS(-35.05)GT(-16.72)T(16.72)PQK 0 0 1 0 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 509.932495117188 3 357.1569 1068.44887 43597.5184270048 1.139 0.0004068 427750 152.78 427760 152.78 509.932560683774 33.011 0.60704 33.011 32.649 33.256 0 78 20 5 0.71465505818952 0.00449057610820015 0.0608264669824408 0.0037268 1 7344 94.465 66.723 3 82241000 23529 17040 21354 19066 12320 23592 15270 21220 19062 2270.8 22256 16109 21522 19526 13081 23420 15505 21445 18648 2629.4 1 1 1 1 1 1 1 1 1 1 992 953 862 915 1098 1098 4534 EAASSSSGTQPAPPAPASPWDSKK 24 Phospho (STY) _EAASSSSGTQPAPPAPAS(ph)PWDSKK_ EAASSSSGTQPAPPAPAS(0.955)PWDS(0.045)KK EAAS(-108.27)S(-103.06)S(-96.82)S(-90.19)GT(-83.32)QPAPPAPAS(13.22)PWDS(-13.22)KK 0 0 1 1 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 781.652282714844 4 609.278514 2433.08495 34986.9823014553 1.7538 0.0010685 282090 171.87 282090 171.87 781.402304754177 60.066 0.69283 60.066 59.621 60.314 -7.1054E-15 68 23 4 0.96976676222996 0.00279416564627756 0.0623726729208941 4.1079E-08 1 14076 162.07 141.87 7 20872000 12682 10994 13275 10580 7056.7 12782 6841.1 10523 10094 9888 12003 10384 13256 10924 7528.3 12704 7063.1 10941 9822 9554.3 1 1 1 1 1 1 1 1 1 1 993 1953 863 916 1099 1099 3549 EADDIVNWLK 10 Unmodified _EADDIVNWLK_ 0 0 0 0 P07237 P07237 P07237 P4HB Protein disulfide-isomerase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.968200683594 2 601.806228 1201.5979 36246.2578770537 2.0672 0.001244 380790 229.16 380790 229.16 830.969154873475 98.945 0.26015 98.945 98.835 99.095 1.4211E-14 20 8 3 0.59789705251616 0.000907575653449073 0.0511227091536361 0.00049981 1 22977 125.97 82.265 1 7648800 21875 15151 22777 15377 18601 21527 19096 20310 16374 38411 20703 14314 22833 15873 19127 21360 19340 21577 16272 36639 1 1 1 1 1 1 1 1 1 1 994 316 864 917 1100 1100 EADGSETPEPFAAEAK 16 Unmodified _EADGSETPEPFAAEAK_ 0 0 0 0 Q7KZF4 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.53747558594 2 824.870482 1647.72641 31012.1996877416 1.6557 0.0013657 277820 229.16 277820 229.16 1054.53365380324 61.766 0.35719 61.766 61.535 61.892 7.1054E-15 27 11 3 0.894670005111764 0.000442781760864994 0.0149090983145838 7.377E-10 1 14497 180.61 154.02 1 7802700 7441.1 10312 8874.4 10980 8012 8403.4 7522.7 9663 11042 10764 7046.6 9745 8842.2 11192 8177.9 8574.2 7777.4 9968.2 10746 10359 1 1 1 1 1 1 1 1 1 1 995 1314 865 918 1101 1101 EAEDELSAR 9 Unmodified _EAEDELSAR_ 0 0 0 0 P36776 P36776 P36776 LONP1 Lon protease homolog, mitochondrial MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.816101074219 2 510.235635 1018.45672 NaN NaN NaN NaN NaN NaN NaN NaN 36.495 1 36.495 35.995 36.995 0 NaN NaN NaN 0.025387 1 8225 76.1 37.966 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 996 557 866 919 1102 1102 EAEDGPMEESK 11 Oxidation (M),Phospho (STY) _EAEDGPM(ox)EES(ph)K_ EAEDGPM(1)EESK EAEDGPMEES(1)K EAEDGPM(92.3)EESK EAEDGPMEES(92.3)K 0 1 1 0 P45379 P45379 P45379 TNNT2 Troponin T, cardiac muscle MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 444.701293945313 4 330.119262 1316.44794 46955.0289807405 -0.46511 -0.00015354 347090 114.58 347090 114.58 444.701538268831 47.323 0.97074 47.323 47.005 47.976 0 128 37 4 0.986160663969251 0.00519862389337959 0.022522512298583 0.0033053 1 10908 92.295 55.448 1 317830000 12402 16060 15891 16535 20109 14008 22302 17136 16104 1150.9 11748 15174 15856 16908 20183 14195 22426 17102 16153 1480.3 1 1 1 1 1 1 1 1 1 1 997 601 867 920 1103 1103 79 976 EAENPEGEEK 10 Unmodified _EAENPEGEEK_ 0 0 0 0 P51858 P51858 P51858 HDGF Hepatoma-derived growth factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.407348632813 2 566.243657 1130.47276 36420.9647410373 2.2757 0.0012886 404710 229.16 404710 229.16 795.406432363163 32.912 0.3466 32.912 32.765 33.112 0 24 11 3 0.67619977988571 0.000671777281936567 0.0258218943331553 0.0006323 1 7371 122.51 80.529 1 5714900 18191 17854 16930 18909 16527 16729 16272 16963 18780 3032.2 17208 16872 17115 19316 16794 16875 16644 17097 18423 3247.7 1 1 1 1 1 1 1 1 1 1 998 684 868 921 1104 1104 EAFSLFDKDGDGTITTK 17 Unmodified _EAFSLFDKDGDGTITTK_ 0 0 0 1 P62158 P62158 P62158 CALM1 Calmodulin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.134033203125 3 615.635268 1843.88397 33805.1380582362 1.9299 0.0011881 372240 229.16 372240 229.16 845.132538071194 86.806 0.52258 86.806 86.505 87.028 1.4211E-14 58 17 4 0.640551560135433 0.00189531560277575 0.0263144668545755 2.4024E-10 1 20233 184.01 150.81 1 24772000 23103 17408 23271 19074 21940 21620 23749 24631 21334 109680 21862 16454 23410 19524 22366 21801 24021 27895 21153 103850 1 1 1 1 1 1 1 1 1 1 999 755 869 922 1105 1105 EAGELPTSPLHLLSPGTPR 19 Phospho (STY) _EAGELPTS(ph)PLHLLSPGTPR_ EAGELPT(0.057)S(0.943)PLHLLSPGTPR EAGELPT(-12.22)S(12.22)PLHLLS(-82.66)PGT(-87.94)PR 0 0 1 0 Q969R5 Q969R5 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.403076171875 3 684.6769 2051.00887 35686.4844854267 1.8124 0.0012409 111570 76.388 111570 76.389 761.400011854956 88.716 0.54518 88.716 88.452 88.997 0 62 18 4 0.926782434567583 0.00577391505630723 0.111756065506323 4.0449E-06 1 20669 136.62 117.55 4 22665000 5202.4 5059.9 5330.9 6051.9 5505.3 4745.8 7143.8 7083.8 5851.1 18731 4923.3 4785.5 5365.8 6132.4 5598.5 4879.8 7157.7 7579.4 5828.1 17802 1 1 1 1 1 1 1 1 1 1 1000 1638 870 923 1106 1106 3031 EAGSPAQEFK 10 Phospho (STY) _EAGS(ph)PAQEFK_ EAGS(1)PAQEFK EAGS(119.79)PAQEFK 0 0 1 0 Q5JSZ5 Q5JSZ5 Q5JSZ5 PRRC2B Protein PRRC2B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.401306152344 2 572.239536 1142.46452 35703.8744981939 1.4448 0.00082679 400470 229.16 400470 229.16 801.402118118497 54.661 0.53955 54.661 54.415 54.955 -7.1054E-15 39 18 3 0.935673016899137 0.000327811494903986 0.00192299797829301 0.00022956 1 12737 119.79 96.067 1 16258000 18962 26265 18784 25732 15396 19782 15926 20500 30733 14811 17942 24809 18884 26358 15845 20131 16591 20981 29696 14421 1 1 1 1 1 1 1 1 1 1 1001 1169 871 924 1107 1107 2024 EAGVEMGDEDDLSTPNEK 18 Unmodified _EAGVEMGDEDDLSTPNEK_ 0 0 0 0 P14868 P14868 P14868 DARS Aspartate--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.718505859375 3 645.94232 1934.80513 35035.459687579 1.7057 0.0011018 236510 152.77 236520 152.78 799.05179138955 59.838 0.56979 59.838 59.566 60.136 0 69 19 5 0.961002507529772 0.00446912560436858 0.0354826201636352 5.0182E-11 1 14033 194.58 175.26 1 42398000 24725 22422 24451 20147 18806 26655 21021 21498 19587 16136 23395 21168 24572 20929 19448 26392 21252 22250 19387 15691 1 1 1 1 1 1 1 1 1 1 1002 392 872 925 1108 1108 EAKPDELMDSK 11 Unmodified _EAKPDELMDSK_ 0 0 0 1 Q9P0L0 Q9P0L0 Q9P0L0 VAPA Vesicle-associated membrane protein-associated protein A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.70068359375 3 421.535949 1261.58602 39364.8982899803 2.1789 0.0009185 543640 229.16 543640 229.16 650.699154268045 57.185 0.34973 57.185 57.014 57.363 0 25 11 3 0.858450344853785 0.00129955623713839 0.023431305493736 0.013731 1 13382 84.566 15.459 1 9616400 11729 21048 11945 19371 13992 12019 12800 15139 21607 6846.4 11099 19873 12038 19874 14069 12427 13328 15271 20946 6797 1 1 1 1 1 1 1 1 1 1 1003 2092 873 926 1109 1109 EAKPGAAEPEVGVPSSLSPSSPSSSWTETDVEER 34 Phospho (STY) _EAKPGAAEPEVGVPSSLSPS(ph)SPSSSWTETDVEER_ EAKPGAAEPEVGVPSSLSPS(0.579)S(0.421)PSSSWTETDVEER EAKPGAAEPEVGVPS(-71.83)S(-64.62)LS(-36.63)PS(1.38)S(-1.38)PS(-32.43)S(-33.45)S(-40.61)WT(-60.11)ET(-73.29)DVEER 0 0 1 1 Q6L8Q7 Q6L8Q7 Q6L8Q7 PDE12 2,5-phosphodiesterase 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1010.48907470703 4 895.655717 3578.59376 30929.9459849128 1.2579 0.0011267 127930 114.58 127930 114.58 1010.4878380704 75.591 0.4031 75.591 75.4 75.803 1.4211E-14 32 13 4 0.748556902326653 0.00218723211696522 0.106583042804463 4.6716E-12 1 17739 178.8 167.28 10 12996000 2468 2966.1 2425.2 3181.9 2688.8 2359.7 2722.7 3031.1 2733.5 9928.5 2335.2 2803.2 2447.8 3240.7 2713.5 2429.1 2770.1 3313.6 2696.6 9419 1 1 1 1 1 1 1 1 1 1 1004 1245 874 927 1110 1110 2206 EALAEAALESPRPALVR 17 Phospho (STY) _EALAEAALES(ph)PRPALVR_ EALAEAALES(1)PRPALVR EALAEAALES(177.32)PRPALVR 0 0 1 1 O14745 O14745 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.713989257813 3 624.990819 1871.95063 37550.9284879212 1.8272 0.001142 122220 76.387 122220 76.388 701.712847910191 74.612 1.5046 74.612 73.556 75.061 0 115 51 4 0.995697171804529 0.0180740916218809 0.190375488862567 1.16E-10 1 17499 177.32 151.46 1 131560000 11414 16057 16340 17067 24100 13232 25360 18933 21466 11241 10819 15174 16268 17401 24012 13527 25647 19109 21345 11023 1 1 1 1 1 1 1 1 1 1 1005 64 875 928 1111 1111 108 EALASLPSSPGLLQSLLER 19 Phospho (STY) _EALASLPSS(ph)PGLLQSLLER_ EALASLPS(0.01)S(0.99)PGLLQSLLER EALAS(-83.42)LPS(-20.06)S(20.06)PGLLQS(-57.84)LLER 0 0 1 0 P41229 P41229 P41229 KDM5C Lysine-specific demethylase 5C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.080017089844 3 687.692439 2060.05549 35414.7761761119 1.4751 0.0010144 111080 76.387 111080 76.388 764.413666832487 101.93 0.19538 101.93 101.84 102.04 -1.4211E-14 8 6 2 0.883949674754911 0.00435788804018622 0.105223292870318 6.5342E-08 1 24005 164.27 107.32 4 30880000 3701.2 5816.7 5280.1 6733.1 7039.8 4215.2 7180.1 6692.6 7358.6 25803 3508.2 5500.1 5247.8 6817 7042.3 4417.2 7306.9 7394.7 7253.2 24452 1 1 1 1 1 1 1 1 1 1 1006 579 876 929 1112 1112 929 EALGLGPPAAQLTPPPAPVGLR 22 Phospho (STY) _EALGLGPPAAQLT(ph)PPPAPVGLR_ EALGLGPPAAQLT(1)PPPAPVGLR EALGLGPPAAQLT(238.72)PPPAPVGLR 0 0 1 0 Q8IY67 Q8IY67 Q8IY67 RAVER1 Ribonucleoprotein PTB-binding 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.451171875 3 734.727595 2201.16095 34478.9321865443 1.973 0.0014496 103970 76.388 103970 76.389 811.449557540808 92.784 1.8503 92.784 91.794 93.644 -1.4211E-14 298 63 7 0.998097865478463 0.0846215243837568 1 4.7233E-17 2 21613 238.72 219.68 1 465680000 43792 51804 48979 61166 26134 44437 26422 38463 63485 31763 41458 48991 48741 61963 27909 45273 27896 39770 61068 30799 2 2 2 2 2 2 2 2 2 2 1007 1434 877 930 1113;1114 1114 4657 EALGLGPPAAQLTPPPAPVGLR 22 Phospho (STY) _EALGLGPPAAQLT(ph)PPPAPVGLR_ EALGLGPPAAQLT(1)PPPAPVGLR EALGLGPPAAQLT(60.95)PPPAPVGLR 0 0 1 0 Q8IY67 Q8IY67 Q8IY67 RAVER1 Ribonucleoprotein PTB-binding 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.116333007813 3 734.727595 2201.16095 NaN NaN NaN NaN NaN NaN NaN NaN 93.869 1 93.869 93.369 94.369 0 NaN NaN NaN 0.042252 1 21855 60.95 48.785 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1008 1434 877 930 1115 1115 4657 EALQDVEDENQ 11 Unmodified _EALQDVEDENQ_ 0 0 0 0 P62258 P62258 P62258 YWHAE 14-3-3 protein epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.86083984375 2 645.278229 1288.5419 36029.2456999126 2.1212 0.0013688 177570 114.58 177570 114.58 759.859685294914 53.613 0.62252 53.613 53.294 53.917 0 75 20 5 0.903397591092511 0.00750709407515163 0.114877297011604 2.8588E-10 1 12478 208.25 196.4 1 170520000 41895 51153 42988 41590 34601 37008 36905 43604 48967 16600 39647 48268 43125 43213 35652 37413 37786 43983 47804 16640 1 1 1 1 1 1 1 1 1 1 1009 758 878 931 1116 1116 EAMEDGEIDGNK 12 Unmodified _EAMEDGEIDGNK_ 0 0 0 0 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 883.439453125 2 654.274632 1306.53471 33587.2463611986 2.7415 0.0017937 350250 229.16 350260 229.16 883.43713324471 49.48 0.4625 49.48 49.256 49.718 0 37 15 3 0.982314811382198 0.00108510694666227 0.0119102089224689 2.6429E-22 1 11472 269.33 235.12 1 41709000 46267 35047 44878 32225 45872 47462 50589 43907 36235 8977.5 43775 33092 45290 33505 46546 46866 50875 44450 36362 9469.6 1 1 1 1 1 1 1 1 1 1 1010 437 879 932 1117 1117 EANNCSSPAGILVDAMSQK 19 Phospho (STY) _EANNCSS(ph)PAGILVDAMSQK_ EANNCS(0.131)S(0.869)PAGILVDAMSQK EANNCS(-8.2)S(8.2)PAGILVDAMS(-145.41)QK 0 0 1 0 P42229 P42229 P42229 STAT5A Signal transducer and activator of transcription 5A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.411682128906 3 691.298995 2070.87516 33621.2389730183 2.045 0.0014137 221000 152.77 221000 152.78 844.408394166724 98.665 1.0458 98.665 98.05 99.095 0 144 35 5 0.975395996572982 0.00350080183400909 0.0812279578592406 5.9519E-08 1 22811 165.32 146 3 70344000 3650.5 7054.6 4222.8 7632.4 7357.8 3167.9 8520.1 6152.4 8096.3 18996 3456.5 6667.5 4259.8 7729.7 7297.7 3447.8 8605.3 6628.1 8006.6 18030 1 1 1 1 1 1 1 1 1 1 1011 583 880 933 1118 1118 944 EANNGSSPAGSLADAMSQK 19 Phospho (STY) _EANNGSS(ph)PAGSLADAMSQK_ EANNGS(0.232)S(0.768)PAGSLADAMSQK EANNGS(-5.2)S(5.2)PAGS(-72.45)LADAMS(-132.92)QK 0 0 1 0 P51692 P51692 P51692 STAT5B Signal transducer and activator of transcription 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.045837402344 3 638.934822 1913.78264 35090.3854842339 2.2973 0.0014678 239110 152.77 239110 152.78 792.044186293965 72.059 0.61815 72.059 71.751 72.369 0 80 20 5 0.987294928774811 0.00364073662831429 0.0185126661808598 6.6667E-08 1 16885 164.04 140.67 4 33483000 7794.6 11518 7284.2 12396 11350 7086.3 11068 9735.6 11649 19646 7373.8 10886 7413.3 12588 11275 7410.1 11296 10255 11469 18724 1 1 1 1 1 1 1 1 1 1 1012 682 881 934 1119 1119 1146 EAPSPEK 7 Phospho (STY) _EAPS(ph)PEK_ EAPS(1)PEK EAPS(91.64)PEK 0 0 1 0 Q13459 Q13459 Q13459 MYO9B Unconventional myosin-IXb MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.336486816406 2 419.173134 836.331714 38423.9065227409 2.2482 0.00094241 546700 229.16 546700 229.16 648.335261012988 36.16 0.63244 36.16 35.965 36.598 0 33 21 2 0.849909460371703 0.00121023513715521 0.0186017036065527 0.0080396 1 8143 91.636 40.832 1 16417000 27874 22030 28179 20082 17939 25384 17620 23407 23147 4092.1 26377 20800 28231 20824 18810 25190 18102 23678 22604 4394.9 1 1 1 1 1 1 1 1 1 1 1013 958 882 935 1120 1120 1608 EARSPQPNK 9 Phospho (STY) _EARS(ph)PQPNK_ EARS(1)PQPNK EARS(95.09)PQPNK 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 522.279052734375 3 369.504522 1105.49174 43134.4218098675 1.1392 0.00042095 413460 152.77 413460 152.78 522.279760920172 26.023 0.8368 26.023 25.731 26.568 3.5527E-15 111 28 6 0.986381340998053 0.0259207993731395 0.0726961333570638 0.0022485 1 5774 95.094 63.908 1 658620000 29340 31997 31519 32334 27379 28317 33155 30546 32739 2951.4 27772 30228 31573 33114 28110 28597 33461 30643 32321 3486.1 1 1 1 1 1 1 1 1 1 1 1014 1436 883 936 1121 1121 2625 EARSPQPNKR 10 Phospho (STY) _EARS(ph)PQPNKR_ EARS(1)PQPNKR EARS(66.99)PQPNKR 0 0 1 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.314697265625 3 421.538226 1261.59285 41362.3962421597 2.2286 0.00093944 362420 152.78 362430 152.78 574.313336773443 22.797 0.69299 22.797 22.631 23.324 -3.5527E-15 53 23 4 0.945807621603703 0.0111093780067452 0.121871034409184 0.017266 1 5112 66.989 41.935 1 23431000 6613.5 7945.7 7178.9 6553.1 8119.8 6135.3 8759.8 8304.2 8360.1 1430.4 6260.2 7498.1 7209 6806.8 8193.1 6198.2 8875.1 8288.8 8265.9 1539.1 1 1 1 1 1 1 1 1 1 1 1015 1436 884 937 1122 1122 2625 EASPAPLAQGEPGREDLPTR 20 Phospho (STY) _EAS(ph)PAPLAQGEPGREDLPTR_ EAS(1)PAPLAQGEPGREDLPTR EAS(140)PAPLAQGEPGREDLPT(-140)R 0 0 1 1 Q9P1Y6 Q9P1Y6 Q9P1Y6 PHRF1 PHD and RING finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.065551757813 3 724.342468 2170.00558 34959.3916978966 1.2927 0.00093638 105460 76.388 105460 76.389 801.064492460487 52.802 0.46583 52.802 52.491 52.956 0 61 15 5 0.982000038823418 0.00304606743965315 0.0483476821731003 8.7652E-12 1 12252 206.47 181.27 2 84268000 14150 13137 13014 15430 10458 13620 9944.4 13450 14760 9881.8 13385 12423 13138 15674 10761 13749 10279 13796 14359 9616.2 1 1 1 1 1 1 1 1 1 1 1016 2096 885 938 1123 1123 3785 EASRPPEEPSAPSPTLPAQFK 21 Phospho (STY) _EASRPPEEPSAPS(ph)PTLPAQFK_ EASRPPEEPS(0.002)APS(0.876)PT(0.123)LPAQFK EAS(-45.16)RPPEEPS(-27.61)APS(8.53)PT(-8.53)LPAQFK 0 0 1 1 Q9H3P2 Q9H3P2 Q9H3P2 NELFA Negative elongation factor A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.361022949219 4 579.778149 2315.08349 36853.5407080747 1.6612 0.00096314 197630 114.58 197630 114.58 694.610087908164 69.026 0.73377 69.026 68.612 69.346 0 88 24 5 0.9209049032481 0.00129791391207882 0.0119298913754661 3.6897E-05 1 16170 122.73 117.41 4 32459000 8933.7 8718.5 10085 9296.3 7051.5 9948 9178.5 9476.4 9226.5 6488.6 8457.9 8239.3 10056 9520.4 7365.2 9948.6 9242.1 9719.3 9101.8 6329.1 1 1 1 1 1 1 1 1 1 1 1017 1932 886 939 1124 1124 3504 EATAQKPTGSVGSTVTTPPPLVR 23 Phospho (STY) _EATAQKPTGSVGSTVTT(ph)PPPLVR_ EATAQKPTGSVGSTVT(0.174)T(0.826)PPPLVR EAT(-75.9)AQKPT(-71.33)GS(-65.03)VGS(-51.85)T(-44.42)VT(-6.76)T(6.76)PPPLVR 0 0 1 1 Q86YP4 Q86YP4 Q86YP4 GATAD2A Transcriptional repressor p66-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.140808105469 4 594.305803 2373.19411 36905.0839706655 1.5724 0.00093451 192800 114.58 192800 114.58 709.138035731604 62.697 1.3402 62.697 61.741 63.081 0 186 45 6 0.939278406070334 0.00237618544725311 0.032299003691058 0.00021053 1 14571 100.95 83.421 7 50001000 12880 12486 11814 12379 10734 10372 8454.4 11436 12035 4898.6 12184 11794 11940 12685 10928 10509 8813.3 11578 11723 4877.3 1 1 1 1 1 1 1 1 1 1 1018 1402 887 940 1125 1125 4650 EATAQKPTGSVGSTVTTPPPLVR 23 Phospho (STY) _EATAQKPTGSVGSTVTT(ph)PPPLVR_ EATAQKPTGSVGST(0.001)VT(0.047)T(0.952)PPPLVR EAT(-70.25)AQKPT(-56.89)GS(-47.64)VGS(-39.67)T(-31.69)VT(-13.08)T(13.08)PPPLVR 0 0 1 1 Q86YP4 Q86YP4 Q86YP4 GATAD2A Transcriptional repressor p66-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 945.18212890625 3 792.071978 2373.19411 32133.2730415102 1.5108 0.0011967 192880 152.78 192880 152.78 945.181547265225 62.705 1.6028 62.705 61.535 63.138 0 218 54 5 0.724366424475742 0.0062565910742521 0.0343399516815792 4.5688E-05 2 14772 129.8 107.68 7 78926000 34469 43206 33777 42254 33193 35603 39999 43506 45045 38024 32614 40809 34057 43336 33820 36154 40527 44479 44232 36811 2 2 2 2 2 2 2 2 2 2 1019 1402 887 940 1126;1127 1126 4650 EATGLSPQAAQEK 13 Phospho (STY) _EATGLS(ph)PQAAQEK_ EATGLS(1)PQAAQEK EAT(-34.64)GLS(34.64)PQAAQEK 0 0 1 0 P17029 P17029 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 934.483154296875 2 705.319046 1408.62354 32882.0619628663 2.422 0.0017083 324910 229.16 324910 229.16 934.481532917972 49.871 0.55942 49.871 49.511 50.07 0 54 18 4 0.982926273555786 0.00129927143099528 0.0633293422911485 1.4114E-22 1 11548 258.7 221.18 2 25367000 20875 19452 19458 19192 19496 19670 20889 20719 19073 6829.7 19747 18374 19677 19729 19801 19721 21147 20948 18897 6910.5 1 1 1 1 1 1 1 1 1 1 1020 414 888 941 1128 1128 669 EATGLSPQAAQEKDGIVIVK 20 Phospho (STY) _EATGLS(ph)PQAAQEKDGIVIVK_ EAT(0.008)GLS(0.992)PQAAQEKDGIVIVK EAT(-20.79)GLS(20.79)PQAAQEKDGIVIVK 0 0 1 1 P17029 P17029 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.529602050781 3 712.031231 2133.07186 33283.2190089226 2.3037 0.0016403 321840 229.16 321840 229.16 941.52573138535 77.298 0.40153 77.298 77.085 77.487 0 30 13 3 0.960474398735529 0.00212922494805662 0.0451206614234475 1.0802E-07 1 18125 150.94 131.91 2 9202400 11222 8484.7 12409 8048.9 9120.4 11319 10333 12303 11154 52334 10623 8012.7 12389 8343.5 9467.6 11311 10482 13880 10971 49564 1 1 1 1 1 1 1 1 1 1 1021 414 889 942 1129 1129 669 EATNTTSEPSAPSQDLLDLSPSPR 24 Phospho (STY) _EATNTTSEPSAPSQDLLDLSPS(ph)PR_ EATNTTSEPSAPSQDLLDLS(0.018)PS(0.982)PR EAT(-143.51)NT(-138.58)T(-134.62)S(-130.11)EPS(-87.86)APS(-50.08)QDLLDLS(-17.4)PS(17.4)PR 0 0 1 0 O75674 O75674 O75674 TOM1L1 TOM1-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.783569335938 3 865.060355 2592.15924 31995.5510938202 1.7988 0.001556 88301 76.386 88303 76.387 941.779478069613 78.122 0.71511 78.122 77.632 78.347 1.4211E-14 34 24 2 0.531996122293639 0.00117528297530595 0.0235259008063612 5.0936E-08 1 18306 158.57 142.27 8 14232000 4664.4 6697.4 4339 7587.1 5051 5200.1 4417 5478 7637.1 31786 4412.5 6331.9 4395.4 7697.6 5077.8 5382.2 4614.7 6441.9 7398.9 30057 1 1 1 1 1 1 1 1 1 1 1022 197 890 943 1130 1130 346 EAVCIVLSDDTCSDEK 16 Unmodified _EAVCIVLSDDTCSDEK_ 0 0 0 0 P55072 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.044128417969 3 614.269491 1839.78664 35366.2208416083 1.6306 0.0010016 248710 152.78 248710 152.78 767.044242418992 75.985 0.78703 75.985 75.685 76.472 0 64 26 3 0.626511908772564 0.00142442329736287 0.035861077378829 5.2659E-05 1 17890 125.52 105.94 1 25565000 4687.8 4837.6 4486.4 4886.8 5724.2 4052.4 5095.2 4654.2 5139.5 9571.9 4435.1 4570.2 4543.1 5001.2 5727 4124.7 5217.9 4933.6 5069.3 9120.8 1 1 1 1 1 1 1 1 1 1 1023 718 891 944 1131 1131 EAVREGSPANWK 12 Phospho (STY) _EAVREGS(ph)PANWK_ EAVREGS(1)PANWK EAVREGS(129.88)PANWK 0 0 1 1 O96019 O96019 O96019 ACTL6A Actin-like protein 6A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.993774414063 3 475.217041 1422.62929 38861.3860191535 1.3425 0.00063796 321490 152.78 321490 152.78 627.994759877748 52.829 0.80049 52.829 52.183 52.984 0 69 27 4 0.957950549993726 0.00514829332469274 0.068518893073515 3.5818E-05 1 12296 129.88 98.049 1 48683000 19608 31842 20933 32601 23980 20688 26832 27000 34581 2912.1 18559 30084 21045 33236 24203 21353 27388 26926 33792 3367 1 1 1 1 1 1 1 1 1 1 1024 275 892 945 1132 1132 460 ECINAAPDSPSK 12 Phospho (STY) _ECINAAPDS(ph)PSK_ ECINAAPDS(0.999)PS(0.001)K ECINAAPDS(30.1)PS(-30.1)K 0 0 1 0 Q7Z569 Q7Z569 Q7Z569 BRAP BRCA1-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 913.9423828125 2 684.778699 1367.54285 33226.1830506836 2.0805 0.0014247 334650 229.16 334650 229.16 913.941704442545 45.749 0.70152 45.749 45.556 46.258 0 55 23 4 0.980785891121034 0.00136595341544633 0.0259279536712543 6.8014E-16 1 10551 220.49 178.49 2 20759000 24531 24338 24635 24688 12735 24355 14760 20965 27218 5084.2 23213 22994 24658 25323 13666 24394 15268 21314 26328 5272.6 1 1 1 1 1 1 1 1 1 1 1025 1344 893 946 1133 1133 2424 ECPSDECGAGVFMASHFDR 19 Unmodified _ECPSDECGAGVFMASHFDR_ 0 0 0 0 P62979 P62979 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.0146484375 3 724.624163 2170.85066 36307.2228210182 1.7547 0.0012715 105420 76.388 105420 76.389 801.01278417275 69.054 0.4675 69.054 68.825 69.293 0 41 15 4 0.485243753450015 0.000814059314170887 0.0114876596411408 1.4148E-07 1 16216 153.36 141.2 1 11366000 7141 8988.7 5990.9 7561.8 8320.7 7381.7 7803.9 7037.9 10417 14819 6752.9 8483.2 6126.2 7848.4 8301.5 7430.7 8040.1 7519.4 10168 14116 1 1 1 1 1 1 1 1 1 1 1026 775 894 947 1134 1134 ECSEAMEVETSVISIDSPQK 20 Phospho (STY) _ECSEAMEVETSVISIDS(ph)PQK_ ECSEAMEVET(0.001)SVIS(0.006)IDS(0.993)PQK ECS(-80.68)EAMEVET(-32.33)S(-34.82)VIS(-22.46)IDS(22.46)PQK 0 0 1 0 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 926.771484375 3 773.66378 2317.96951 32575.9087160729 1.7465 0.0013512 197470 152.77 197470 152.77 926.771226786178 84.839 0.91544 84.839 84.357 85.273 0 80 31 5 0.985444303683 0.00366195665564193 0.0576716081879268 1.1969E-05 1 19815 132.33 110.73 5 12857000 4005.4 3677 3036.4 3814 3738.4 4647 3751.1 4123.9 3952 38329 3786.5 3474.3 3121.8 3921.2 3752.6 4686.4 3823.2 5311.8 3890.9 36186 1 1 1 1 1 1 1 1 1 1 1027 911 895 948 1135 1135 1497 EDDLNSFNATDLK 13 Unmodified _EDDLNSFNATDLK_ 0 0 0 0 P09960 P09960 P09960 LTA4H Leukotriene A-4 hydrolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.341125488281 3 494.563332 1480.66817 39853.1890394787 2.3008 0.0011379 308910 152.78 308910 152.78 647.33935267745 75.003 0.46536 75.003 74.766 75.232 1.4211E-14 33 15 3 0.946970883825781 0.00102388810254736 0.0102703250661432 5.9491E-07 1 17616 145.71 109.29 1 6259200 5287.2 5015.1 6420.8 5624.8 6637.5 5861.6 7973.5 6731.2 4934.4 5985.7 5007.3 4741.1 6405.4 5741.9 6739 5887 7968.9 6898.6 4997.7 5792.1 1 1 1 1 1 1 1 1 1 1 1028 345 896 949 1136 1136 EDEEESLNEVGYDDIGGCRK 20 Unmodified _EDEEESLNEVGYDDIGGCRK_ 0 0 0 1 P55072 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 925.444396972656 3 771.997376 2312.9703 32013.7673238913 2.558 0.0019748 197900 152.77 197900 152.78 925.440091777127 63.057 0.41017 63.057 62.845 63.255 7.1054E-15 41 13 4 0.951126722745457 0.00175939078092017 0.0267725292346072 0.010567 1 14818 83.849 58.956 1 13383000 6999.2 8065.1 7427.7 8976.2 10383 7660.5 11490 9494.8 9540.1 16832 6624.6 7624 7492.9 9139.7 10376 7791.9 11589 9960.1 9495.9 16069 1 1 1 1 1 1 1 1 1 1 1029 718 897 950 1137 1137 EDEISPPPPNPVVK 14 Phospho (STY) _EDEIS(ph)PPPPNPVVK_ EDEIS(1)PPPPNPVVK EDEIS(118.2)PPPPNPVVK 0 0 1 0 P10644 P10644 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.365539550781 3 533.255161 1596.74365 36656.270501456 1.4168 0.00075551 286490 152.77 286500 152.78 686.362665372573 66.071 1.1515 66.071 65.483 66.635 0 160 38 5 0.913715830182908 0.00623370687189997 0.0688937224342506 0.00010339 1 15434 118.2 88.873 1 27938000 11672 4673.5 11725 4998.7 13352 10934 16025 10770 5892.4 8483.5 11045 4416.7 11828 5208 13482 10709 15906 11065 6243.7 8237.5 1 1 1 1 1 1 1 1 1 1 1030 355 898 951 1138 1138 578 EDGNEEDKENQGDETQGQQPPQR 23 Unmodified _EDGNEEDKENQGDETQGQQPPQR_ 0 0 0 1 P67809 P67809 P67809 YBX1 Nuclease-sensitive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.364440917969 4 657.78147 2627.09677 35199.1899358436 2.316 0.0015234 174190 114.58 174200 114.58 772.613793206562 28.106 0.85884 28.106 27.836 28.695 3.5527E-15 146 29 6 0.994157476670049 0.0101398059279434 0.155918729449923 3.1636E-12 1 6316 178.84 159.02 1 90442000 10836 10851 10572 11948 8768.8 10707 7472.6 10409 12177 1602.9 10253 10257 10636 12181 8991.2 10787 7797.5 10501 11815 1750.3 1 1 1 1 1 1 1 1 1 1 1031 785 899 952 1139 1139 EDGNEEDKENQGDETQGQQPPQR 23 Unmodified _EDGNEEDKENQGDETQGQQPPQR_ 0 0 0 1 P67809 P67809 P67809 YBX1 Nuclease-sensitive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1029.81884765625 3 876.706201 2627.09677 30958.0010018746 2.0761 0.0018201 174260 152.78 174260 152.78 1029.81625251299 28.109 0.88708 28.109 27.836 28.723 0 155 30 6 0.983603065197869 0.00204589763278225 0.0211934585277413 4.5685E-32 1 6356 290.59 267.38 1 71043000 5484.2 7665.4 6394.5 7608.4 5996.5 5666.5 6695.7 5763.3 8624.7 134.37 5192.8 7240.9 6383 7784.3 6120.5 5768 6834.9 5781.3 8428.2 259.91 1 1 1 1 1 1 1 1 1 1 1032 785 899 952 1140 1140 EDGNEEDKENQGDETQGQQPPQRR 24 Unmodified _EDGNEEDKENQGDETQGQQPPQRR_ 0 0 0 2 P67809 P67809 P67809 YBX1 Nuclease-sensitive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.390014648438 4 696.806748 2783.19788 34558.9954705341 1.7526 0.0012212 164440 114.58 164440 114.58 811.638149202337 25.847 0.51214 25.847 25.675 26.187 0 73 17 5 0.980007053463307 0.00560009881236425 0.0209488635552101 1.2867E-32 1 5757 288.91 268.84 1 51107000 10171 11360 10654 10739 12962 10447 11974 10813 10896 382.16 9626 10728 10727 11060 13002 10490 12206 10843 10797 610.1 1 1 1 1 1 1 1 1 1 1 1033 785 900 953 1141 1141 EDIYSGGGGGGSR 13 Phospho (STY) _EDIYSGGGGGGS(ph)R_ EDIYSGGGGGGS(1)R EDIY(-109.53)S(-82.24)GGGGGGS(82.24)R 0 0 1 0 Q13151 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.831481933594 2 646.251163 1290.48777 38204.5159623665 1.3793 0.00089135 177300 114.58 177300 114.58 760.830814873684 40.294 0.32849 40.294 40.12 40.449 -7.1054E-15 20 10 3 0.940404485319565 0.000369373283303978 0.00939183793279304 0.0001565 1 9177 118.26 105.28 3 10651000 23088 18283 23421 20651 19588 24821 22042 20511 19331 10087 21848 17285 23522 21126 20137 24658 22245 21045 19188 9972.9 1 1 1 1 1 1 1 1 1 1 1034 930 901 954 1142 1142 1531 EDLNCQEEEDPMNK 14 Unmodified _EDLNCQEEEDPMNK_ 0 0 0 0 O75821 O75821 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.010070800781 3 584.23467 1749.68218 37029.5060018185 1.1866 0.00069327 261500 152.77 261500 152.78 737.343253516688 54.626 0.50961 54.626 54.387 54.896 0 55 17 5 0.713136452182322 0.000770723684982941 0.00220689218345399 3.7203E-05 1 12723 132.24 114.96 1 33185000 19006 19937 18685 21643 16333 19139 17254 19687 23138 6441.3 17984 18843 18806 22078 16732 19314 17680 19920 22581 6520.8 1 1 1 1 1 1 1 1 1 1 1035 203 902 955 1143 1143 EDLRLPEGDLGK 12 Unmodified _EDLRLPEGDLGK_ 0 0 0 1 P63241 P63241 P63241 EIF5A Eukaryotic translation initiation factor 5A-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 600.68017578125 3 447.905141 1340.69359 41135.163806176 1.6072 0.00071988 341090 152.78 341090 152.78 600.680197648995 67.949 0.4486 67.949 67.675 68.124 0 36 14 3 0.837410048024272 0.00111512600319828 0.0388971829619413 0.03644 1 15966 62.528 30.005 1 9963900 7482.5 8445.9 8754.5 7887.9 7378.1 7602.6 7724.7 9089.6 10585 3325.3 7085.2 7975.4 8726 8128.6 7576.2 7658.1 7924.7 9160.1 10323 3341.5 1 1 1 1 1 1 1 1 1 1 1036 782 903 956 1144 1144 EDLSKSPK 8 Phospho (STY) _EDLSKS(ph)PK_ EDLS(0.079)KS(0.921)PK EDLS(-10.68)KS(10.68)PK 0 0 1 1 Q14155 Q14155 Q14155 ARHGEF7 Rho guanine nucleotide exchange factor 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.64990234375 3 328.486357 982.437242 41736.6914927776 2.074 0.00068128 697630 229.16 697640 229.16 557.649361088558 44.121 0.78081 44.121 43.815 44.596 0 80 25 5 0.866046065863699 0.0108423130758683 0.197164185486269 0.017426 1 10108 60.49 20.377 2 134620000 102060 48580 105850 50011 59418 103290 60492 71910 47458 4152.6 96594 45900 105800 52119 63042 100770 61167 73473 47380 5574.4 1 1 1 1 1 1 1 1 1 1 1037 991 904 957 1145 1145 1675 EDLSPAFDHSPNK 13 Phospho (STY) _EDLSPAFDHS(ph)PNK_ EDLSPAFDHS(1)PNK EDLS(-79.35)PAFDHS(79.35)PNK 0 0 1 0 P17706 P17706 P17706 PTPN2 Tyrosine-protein phosphatase non-receptor type 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.659973144531 3 512.883727 1535.62935 38996.6701781158 2.1238 0.0010893 297870 152.77 297880 152.78 665.992991932513 58.302 0.64383 58.302 58.023 58.667 0 72 21 6 0.796519315440395 0.00388825540290508 0.0397277103054783 1.7702E-07 1 13641 165.9 121.29 2 44107000 25640 24342 24969 24311 15770 28330 15278 24587 27243 6864.9 24260 22995 25068 25028 16551 28183 15903 25014 26373 7033.2 1 1 1 1 1 1 1 1 1 1 1038 419 905 958 1146 1146 677 EDMAALEK 8 Unmodified _EDMAALEK_ 0 0 0 0 Q9BQE3;P68363;Q71U36;P68366 Q9BQE3;P68363 P68363 TUBA1C;TUBA1B;TUBA1A;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.881103515625 2 453.715493 905.416433 38763.3748691142 1.8617 0.00084468 505080 229.16 505080 229.16 682.877824165143 59.926 0.69098 59.926 59.678 60.369 0 39 23 3 0.713836661703194 0.00121588238502122 0.0254499815386645 0.02145 1 14042 92.062 36.052 1 16414000 28968 37349 30354 37306 27263 28955 30467 32218 40382 9030 27416 35282 30453 38173 27904 29454 31130 32463 39424 9248.5 1 1 1 1 1 1 1 1 1 1 1039 789;1805 906 959 1147 1147 EDMAALEKDYEEVGADSADGEDEGEEY 27 Unmodified _EDMAALEKDYEEVGADSADGEDEGEEY_ 0 0 0 1 Q9BQE3 Q9BQE3 Q9BQE3 TUBA1C Tubulin alpha-1C chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1142.50537109375 3 989.389104 2965.14548 29505.1757417838 0.4959 0.00049064 154410 152.78 154420 152.78 1142.49940283048 87.751 0.5265 87.751 87.5 88.027 -1.4211E-14 69 17 5 0.948843930394712 0.00188941505102836 0.0200168740882124 2.4726E-17 2 20445 223.85 215.95 1 31351000 7796.4 20065 8232.4 18058 11731 10036 13108 17526 21630 45451 7379.1 18943 8309.9 18535 11726 10597 13510 18659 20981 43203 2 2 2 2 2 2 2 2 2 2 1040 1805 907 960 1148;1149 1148 EDMAALEKDYEEVGVDSVEGEGEEEGEEY 29 Unmodified _EDMAALEKDYEEVGVDSVEGEGEEEGEEY_ 0 0 0 1 P68363;Q71U36 P68363 P68363 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1232.88317871094 3 1079.44176 3235.30344 28003.3731895797 1.3913 0.0015018 141530 152.77 141530 152.78 1232.55119327167 95.265 0.59411 95.265 94.943 95.538 0 72 20 5 0.676077387502057 0.00157722221802942 0.0217182350787257 3.6762E-07 1 22131 149.66 135.71 1 40586000 3858 5636.8 5675.9 5227.6 4945.1 5071.7 6937.2 6739.7 5525.8 43031 3657.5 5322.6 5605.6 5390 5088.3 5192.5 6927.2 7992.4 5512.2 40675 1 1 1 1 1 1 1 1 1 1 1041 789 908 961 1150 1150 EDMAALEKDYEEVGVDSVEGEGEEEGEEY 29 Unmodified _EDMAALEKDYEEVGVDSVEGEGEEEGEEY_ 0 0 0 1 P68363;Q71U36 P68363 P68363 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 925.167419433594 4 809.833136 3235.30344 32820.6086039402 1.5376 0.0012452 141490 114.58 141490 114.58 924.915223385291 95.264 0.53825 95.264 94.97 95.509 0 44 18 4 0.97883340743837 0.000337100665304966 0.00577489116240501 0.043051 1 22192 45.611 37.657 1 35911000 2435.4 4221.9 3122.9 2988.5 4017.8 3066.5 3337.4 4646.9 3570.5 17017 2307.1 3981.2 3114.7 3145 4015.1 3122.1 3436.3 5112.7 3513.2 16132 1 1 1 1 1 1 1 1 1 1 1042 789 908 961 1151 1151 EDQTEYLEER 10 Unmodified _EDQTEYLEER_ 0 0 0 0 P07900;Q58FF6;Q58FF7;P08238 P07900;P08238 P08238 HSP90AA1;HSP90AB4P;HSP90AB3P;HSP90AB1 Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.870300292969 2 656.288596 1310.56264 35632.5372165646 1.0483 0.00068796 174590 114.58 174590 114.58 770.868642834338 45.535 0.78115 45.535 45.18 45.961 7.1054E-15 85 26 5 0.938213045116557 0.000805337784641546 0.00652868373570379 3.0899E-09 1 10427 196.88 133.67 1 486580000 30416 39170 33586 38372 26095 33658 27155 33185 40881 7968.7 28793 36998 33547 39372 26951 33957 27966 33545 39755 8271.5 1 1 1 1 1 1 1 1 1 1 1043 331;323 909 962 1152 1152 EDRVTLADRGPK 12 Unmodified _EDRVTLADRGPK_ 0 0 0 2 Q96MG2 Q96MG2 Q96MG2 JSRP1 Junctional sarcoplasmic reticulum protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 454.518585205078 4 339.936208 1355.71573 46779.195803523 0.94639 0.00032171 337070 114.58 337070 114.58 454.518297968273 28.455 0.68662 28.455 28.122 28.808 -3.5527E-15 80 23 5 0.79713584549774 0.0033706405817984 0.0494730763984843 0.052702 1 6318 22.055 1.1024 1 16864000 10840 10344 10444 10574 11321 9659.6 10210 11633 10925 2206.4 10256 9772.6 10548 10829 11422 9752 10466 11659 10750 2346.8 1 1 1 1 1 1 1 1 1 1 1044 1714 910 963 1153 1153 EDSGTFSLGK 10 Phospho (STY) _EDS(ph)GTFSLGK_ EDS(0.997)GT(0.003)FSLGK EDS(24.93)GT(-24.93)FS(-95.83)LGK 0 0 1 0 O75569 O75569 O75569 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.896240234375 2 560.731544 1119.44853 34642.4861831873 2.5415 0.0014251 408680 229.16 408690 229.16 789.894419298784 68.023 1.3527 68.023 67.502 68.855 1.4211E-14 82 45 2 0.988201727711556 0.00649630195596233 0.163359369913065 7.3969E-21 1 15944 270.06 232.34 3 114070000 51743 48239 49752 48091 67740 48529 74229 58997 50982 17767 48955 45569 50445 49395 67750 48788 74611 59308 51290 18095 1 1 1 1 1 1 1 1 1 1 1045 193 911 964 1154 1154 338 EDSLSAPIIDLELK 14 Phospho (STY) _EDS(ph)LSAPIIDLELK_ EDS(0.5)LS(0.5)APIIDLELK EDS(0)LS(0)APIIDLELK 0 0 1 0 REV__O60229 REV__O60229 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.376220703125 3 541.602338 1621.78518 37739.8556171643 1.4859 0.00080478 282080 152.77 282080 152.77 694.375340506581 102.41 0.46716 102.41 102.25 102.71 0 37 15 5 0.947050906930647 0.00681633740813326 0.0612658563439763 0.040393 1 24128 46.319 6.658 2 37824000 7577.9 12785 6329.8 12756 2556.7 6913.5 3443.3 8637.9 14964 41594 7166 12078 6401 13005 2840.7 7290.5 3777.9 9850.9 14276 39366 1 1 1 1 1 1 1 1 1 1 + 1046 2326 912 965 1155 1155 4282;4283 EDSQRPGAHLTVK 13 Phospho (STY) _EDS(ph)QRPGAHLTVK_ EDS(1)QRPGAHLTVK EDS(33.22)QRPGAHLT(-33.22)VK 0 0 1 1 P09651;Q32P51 P09651 P09651 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.686645507813 3 506.575117 1516.70352 38075.6377866235 2.2147 0.0011219 301590 152.78 301590 152.78 659.350442270587 41.596 0.45773 41.596 41.368 41.826 0 48 15 5 0.684490284040608 0.00262666110825948 0.0327718749471975 0.029361 1 9476 52.612 31.659 2 16753000 21717 19669 24114 19547 19586 27524 25482 28109 20491 6435.7 20559 18580 24099 20206 20222 27252 25519 28367 20430 6710.5 1 1 1 1 1 1 1 1 1 1 1047 341 913 966 1156 1156 555 EDVEVAESPLR 11 Phospho (STY) _EDVEVAES(ph)PLR_ EDVEVAES(1)PLR EDVEVAES(192.65)PLR 0 0 1 0 Q99567 Q99567 Q99567 NUP88 Nuclear pore complex protein Nup88 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.878234863281 2 662.29504 1322.57553 34700.1652456296 1.6113 0.0010671 173010 114.58 173010 114.58 776.876373515568 56.37 0.82973 56.37 56.067 56.897 0 72 27 4 0.848280179190695 0.00356279325378844 0.121202507461521 3.6132E-10 1 13151 192.65 146.52 1 41927000 27358 34836 27493 32724 23438 27292 21814 29522 36400 38210 25889 32897 27623 33642 24015 27699 22682 30677 35298 36663 1 1 1 1 1 1 1 1 1 1 1048 1772 914 967 1157 1157 3260 EEALEEADELDR 12 Unmodified _EEALEEADELDR_ 0 0 0 0 Q9UGY1 Q9UGY1 Q9UGY1 NOL12 Nucleolar protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.399597167969 2 709.817718 1417.62088 32230.2844020677 1.7021 0.0012082 161420 114.58 161430 114.58 824.900921694786 62.604 0.38513 62.604 62.376 62.761 0 26 12 3 0.951152636712465 0.000534559700977918 0.0149286494374137 7.4546E-07 1 14701 163.12 126.78 1 8942600 16312 10249 15674 10941 11497 17657 10855 13059 9534.6 13259 15433 9685.5 15767 11300 11903 17366 11044 13677 9463.8 12787 1 1 1 1 1 1 1 1 1 1 1049 2141 915 968 1158 1158 EEAPASPLRPLYPQISPLK 19 Phospho (STY) _EEAPASPLRPLYPQIS(ph)PLK_ EEAPASPLRPLYPQIS(1)PLK EEAPAS(-57.14)PLRPLY(-49.04)PQIS(49.04)PLK 0 0 1 1 P85037 P85037 P85037 FOXK1 Forkhead box protein K1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.490661621094 3 729.380083 2185.11842 33792.9584817643 0.98624 0.00071934 209460 152.78 209460 152.78 882.489412657143 87.934 0.60719 87.934 87.646 88.253 0 63 20 4 0.976276936591784 0.00637565248913051 0.115166876674693 1.4256E-07 1 20519 150.09 106.79 3 21567000 15017 22175 16422 23146 10697 16726 12863 18784 21918 22755 14215 20953 16390 23603 11232 17120 13237 19448 21242 21862 1 1 1 1 1 1 1 1 1 1 1050 816 916 969 1159 1159 1304;1305 EEAPASPLRPLYPQISPLK 19 Phospho (STY) _EEAPAS(ph)PLRPLYPQISPLK_ EEAPAS(1)PLRPLYPQISPLK EEAPAS(88.15)PLRPLY(-102.37)PQIS(-88.15)PLK 0 0 1 1 P85037 P85037 P85037 FOXK1 Forkhead box protein K1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.157653808594 3 729.380083 2185.11842 33813.3267004703 2.0818 0.0015184 209460 152.78 209460 152.78 882.489670142473 89.702 0.66486 89.702 89.377 90.042 -1.4211E-14 88 22 5 0.888190714933874 0.00147922318212047 0.00799671730913699 7.3225E-08 1 20871 162.71 136.88 3 50676000 11429 13701 11223 13122 10141 13272 11282 13484 14076 21276 10814 12940 11302 13511 10374 13339 11505 14158 13770 20346 1 1 1 1 1 1 1 1 1 1 1051 816 916 969 1160 1160 1304;1305 EEAPASPLRPLYPQISPLK 19 2 Phospho (STY) _EEAPAS(ph)PLRPLYPQIS(ph)PLK_ EEAPAS(1)PLRPLYPQIS(1)PLK EEAPAS(57.89)PLRPLY(-47.59)PQIS(47.59)PLK 0 0 2 1 P85037 P85037 P85037 FOXK1 Forkhead box protein K1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 909.146179199219 3 756.035527 2265.08475 33270.8268303078 2.1548 0.0016291 202070 152.77 202080 152.78 909.143476714131 92.7 0.75039 92.7 92.31 93.06 0 87 25 4 0.939184850600635 0.00305917975395028 0.0573143648051671 7.0794E-05 1 21545 105.17 87.347 3 23665000 7189.4 10580 9117.7 9929.5 4965.7 8264.4 6918.5 9895.7 11407 25064 6810.2 9990.5 9023 10208 5316.2 8425.8 7071.6 10618 11065 23830 1 1 1 1 1 1 1 1 1 1 1052 816 916 970 1161 1161 1304;1305 EEASDYLELDTIK 13 Unmodified _EEASDYLELDTIK_ 0 0 0 0 P14625 P14625 P14625 HSP90B1 Endoplasmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.022705078125 3 509.247121 1524.71953 37646.4390576979 1.8401 0.00093706 300000 152.78 300000 152.78 662.022347025362 84.318 0.53862 84.318 83.985 84.524 0 59 18 4 0.900897176142325 0.00236322588062354 0.0337808241215685 6.7981E-07 1 19673 141.38 99.34 1 24176000 8048.4 6981.1 8338.4 6197.5 7748.3 8269.1 8624.8 8411.9 7598.8 6143.6 7617 6590.4 8374.1 6444.5 7909.2 8209.5 8709.1 8617.3 7541.2 5979.6 1 1 1 1 1 1 1 1 1 1 1053 389 917 971 1162 1162 EEDDVQIVSILIFPK 15 Phospho (STY) _EEDDVQIVS(ph)ILIFPK_ EEDDVQIVS(1)ILIFPK EEDDVQIVS(40.35)ILIFPK 0 0 1 0 Q8NDH2 Q8NDH2 Q8NDH2 CCDC168 Coiled-coil domain-containing protein 168 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.079833984375 3 608.972542 1823.8958 35314.5602761763 1.8413 0.0011213 250870 152.77 250870 152.78 761.748355318833 52.551 0.5738 52.551 52.238 52.812 7.1054E-15 68 19 5 0.990272881478237 0.00202842195818103 0.0190861681200835 0.050056 1 12275 40.349 16.518 1 52857000 13300 20429 15257 20356 15789 14462 14936 17440 21738 26983 12592 19298 15255 20811 15986 14847 15431 18191 21161 25811 1 1 1 1 1 1 1 1 1 1 1054 1506 918 972 1163 1163 2765 EEDEEPESPPEKK 13 Phospho (STY) _EEDEEPES(ph)PPEKK_ EEDEEPES(1)PPEKK EEDEEPES(190.24)PPEKK 0 0 1 1 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.71728515625 3 541.553824 1621.63964 35648.8322930831 2.4397 0.0013212 423160 229.16 423160 229.16 771.050792740394 41.76 1.824 41.76 40.714 42.538 0 218 63 5 0.980523213452499 0.00732772192526434 0.0958569177472605 1.037E-10 2 9465 190.24 159.82 1 100010000 72178 61584 71172 58295 61749 69554 68110 64826 61224 17867 68295 58157 71620 60238 63303 69190 68836 65746 60702 18324 2 2 2 2 2 2 2 2 2 2 1055 1913 919 973 1164;1165 1164 3472 EEEIAALVIDNGSGMCK 17 Acetyl (Protein N-term) _(ac)EEEIAALVIDNGSGMCK_ 1 0 0 0 P63261 P63261 P63261 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.51684570313 2 939.434609 1876.85466 29892.8703301596 0.9504 0.00089284 121960 114.58 121970 114.58 1055.01221156894 101.31 0.20149 101.31 101.19 101.39 0 17 6 4 0.984424963051032 0.00225802178210626 0.124127823651132 2.6658E-31 1 23783 167.18 122.04 1 40447000 19294 14489 27201 14687 25826 23208 30337 26060 16415 135230 18287 13688 26926 15205 26340 23172 30282 30104 16787 127930 1 1 1 1 1 1 1 1 1 1 1056 783 920 974 1166 1166 EEEWDPEYTPK 11 Phospho (STY) _EEEWDPEYT(ph)PK_ EEEWDPEY(0.007)T(0.993)PK EEEWDPEY(-21.34)T(21.34)PK 0 0 1 0 Q9NYF8;Q9Y2W1 Q9NYF8;Q9Y2W1 Q9NYF8 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.640014648438 3 501.52895 1501.56502 39844.2231771659 2.811 0.0014098 304620 152.78 304620 152.78 654.303766431624 68.445 0.36952 68.445 68.243 68.612 0 22 12 2 0.501388145205131 0.00127807688933414 0.0321605761070401 0.017815 1 16078 65.956 49.732 2 9020300 9066.3 8394.2 11931 8819.9 6251 10481 6136.1 8961.9 10087 6285.7 8589.8 7932.1 11779 9056.7 6681 10425 6359.7 9237.7 9785.1 6126.1 1 1 1 1 1 1 1 1 1 1 1057 2072;2257 921 975 1167 1167 4788;4846 EEFASTCPDDEEIELAYEQVAK 22 Unmodified _EEFASTCPDDEEIELAYEQVAK_ 0 0 0 0 O00299 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1011.48724365234 3 858.379375 2572.11629 30783.1695639254 1.4857 0.0012753 177980 152.78 177980 152.78 1011.48872575477 94.59 0.74649 94.59 94.168 94.914 0 90 25 4 0.98973052241051 0.0131648871616719 0.504369861632401 1.7887E-23 1 21958 253.48 233.93 1 179320000 7967.1 14370 10391 13867 7765.2 10285 8544.7 11111 16679 28240 7548 13572 10293 14212 8053.9 10532 8883.1 11964 16112 26849 1 1 1 1 1 1 1 1 1 1 1058 41 922 976 1168 1168 EEGASPLDFD 10 Unmodified _EEGASPLDFD_ 0 0 0 0 P46459 P46459 P46459 NSF Vesicle-fusing ATPase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.812622070313 2 540.230019 1078.44548 38576.8817274137 1.503 0.00081197 212100 114.58 212100 114.58 654.811138028988 75.837 0.49809 75.837 75.628 76.126 0 38 16 3 0.895419989035158 0.00103139989350654 0.0347646062396555 0.0034063 1 17827 100.15 88.301 1 12794000 7259.6 7470.6 9321 7097.6 7737.7 9037.2 8605.3 7885.9 8317.1 10443 6877.2 7055.1 9249.4 7341.5 7957.7 8977.1 8709.9 8269.4 8218.7 10016 1 1 1 1 1 1 1 1 1 1 1059 610 923 977 1169 1169 EEGSLSDTEADAVSGQLPDPTTNPSAGK 28 Phospho (STY) _EEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK_ EEGS(0.034)LS(0.964)DT(0.002)EADAVSGQLPDPTTNPSAGK EEGS(-14.54)LS(14.54)DT(-27.42)EADAVS(-143.25)GQLPDPT(-173)T(-172.68)NPS(-187.64)AGK 0 0 1 0 Q8N1G4 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.147277832031 4 714.063198 2852.22369 35009.9605594957 2.4075 0.0017191 160460 114.58 160470 114.58 828.895505320948 74.017 1.2998 74.017 73.528 74.828 0 141 37 6 0.922008432041124 0.00386502485750172 0.0400565268721391 5.4299E-12 1 17364 195.4 178.46 7 41576000 5823.1 9210.6 5515 8291.8 8832.3 6123.5 8178.2 8183 8672.9 37177 5508.9 8695.7 5610.4 8535 8758.4 6330.5 8369.7 9248.6 8536.6 35196 1 1 1 1 1 1 1 1 1 1 1060 1457 924 978 1170 1170 2700 EEGSLSDTEADAVSGQLPDPTTNPSAGK 28 Phospho (STY) _EEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK_ EEGS(0.023)LS(0.971)DT(0.006)EADAVSGQLPDPTTNPSAGK EEGS(-16.2)LS(16.2)DT(-22.45)EADAVS(-150.73)GQLPDPT(-197.72)T(-203.95)NPS(-225.43)AGK 0 0 1 0 Q8N1G4 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1105.19396972656 3 951.748505 2852.22369 30072.1816535201 2.0931 0.0019921 160520 152.78 160520 152.78 1104.85742714444 74.011 1.2413 74.011 73.556 74.797 1.4211E-14 130 42 4 0.807630686387179 0.00631844289000131 0.055112885734337 4.6986E-18 1 17372 237.5 219.41 7 63881000 5204.7 11018 7117.9 8898.5 10077 7314.4 6591.1 13540 10548 59443 4932.1 10396 7087 9240.6 10006 7592.3 6985 15131 10240 56286 1 1 1 1 1 1 1 1 1 1 1061 1457 924 978 1171 1171 2700 EEHGGLIRSPR 11 Phospho (STY) _EEHGGLIRS(ph)PR_ EEHGGLIRS(1)PR EEHGGLIRS(124.96)PR 0 0 1 1 P26368 P26368 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 520.601989746094 3 444.213631 1329.61906 43013.6148813169 0.95028 0.00042213 171960 76.388 171960 76.388 520.602277793146 31.663 2.1961 31.663 31.059 33.256 0 282 74 5 0.906270275556277 0.00487968776902035 0.0656103189926623 6.4543E-05 2 7000 124.96 88.027 1 831940000 33502 37593 34625 36642 34639 33538 34446 34649 28919 4542.2 31706 35507 34800 37631 35143 33778 34921 34849 28338 5078.9 2 2 2 2 2 2 2 2 1 2 1062 480 925 979 1172;1173 1172 795 EEIQDEEDDDDYVEEGEEEEEEEEGGLRGEK 31 Unmodified _EEIQDEEDDDDYVEEGEEEEEEEEGGLRGEK_ 0 0 0 1 Q9BTT0 Q9BTT0 Q9BTT0 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1373.92724609375 3 1220.14879 3657.42455 26890.7443613763 1.3839 0.0016886 125210 152.77 125210 152.78 1373.25821980727 70.316 0.4346 70.316 70.073 70.507 0 52 14 5 0.977865517756971 0.00341382680267713 0.0527412154005859 3.4094E-07 1 16481 141.38 123.47 1 33871000 8939.7 5003.7 9329 4836.4 6578.6 8734.1 7998 7507.6 4522.7 4832.2 8460.7 4725.8 9340.4 5038.7 6855.2 8574.3 7977.9 7723.8 4609.9 4723.9 1 1 1 1 1 1 1 1 1 1 1063 1826 926 980 1174 1174 EEIQDEEDDDDYVEEGEEEEEEEEGGLRGEK 31 Unmodified _EEIQDEEDDDDYVEEGEEEEEEEEGGLRGEK_ 0 0 0 1 Q9BTT0 Q9BTT0 Q9BTT0 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1030.19799804688 4 915.363415 3657.42455 30550.7650812206 1.3161 0.0012047 125170 114.58 125180 114.58 1030.69613425173 70.381 0.4036 70.381 70.073 70.476 0 57 13 6 0.977293778659225 0.00437427205087898 0.03139377899562 1.6741E-45 1 16493 340.65 324.57 1 32917000 9102 4899.1 10060 5451.6 8395.6 10467 8771.8 8593.1 6193.4 15493 8616.4 4631.1 10055 5644.4 8621 10273 8840.2 9159 6220.3 14787 1 1 1 1 1 1 1 1 1 1 1064 1826 926 980 1175 1175 EELDDVIALD 10 Unmodified _EELDDVIALD_ 0 0 0 0 Q9UBT2 Q9UBT2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.85986328125 2 566.274426 1130.5343 38559.2032743617 1.9068 0.0010798 202340 114.58 202340 114.58 680.855805478033 94.221 0.60822 94.221 93.906 94.515 0 49 20 3 0.979448428350143 0.00263483230543686 0.116839283579858 0.0011918 1 21909 107.9 94.518 1 13305000 4280.7 4732.7 3741.4 4822.4 3352.1 4002.7 3974 4906.2 4299.3 15556 4048.6 4471.3 3794.8 4932.8 3433.8 4089.3 4024.2 5355 4228.3 14761 1 1 1 1 1 1 1 1 1 1 1065 2129 927 981 1176 1176 EELDVSVREEEVSCSGPLSQK 21 Phospho (STY) _EELDVS(ph)VREEEVSCSGPLSQK_ EELDVS(1)VREEEVSCSGPLSQK EELDVS(47.25)VREEEVS(-50.11)CS(-47.25)GPLS(-80.53)QK 0 0 1 1 Q9UJX4 Q9UJX4 Q9UJX4 ANAPC5 Anaphase-promoting complex subunit 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 972.809875488281 3 819.699881 2456.07781 32179.1397252305 1.9501 0.0015985 186380 152.78 186380 152.78 972.808220324102 71.885 0.62002 71.885 71.605 72.225 0 47 20 4 0.947158670964937 0.000786160079985243 0.00635115933088439 6.1611E-05 1 16880 105.17 82.95 4 10491000 2835.1 4233.2 4020.6 4484.3 3380.6 4783.4 4494.2 5140 4768.8 38371 2687.2 4000.4 3974.6 4593.9 3484.4 4858 4528.8 6298.2 4693.8 36250 1 1 1 1 1 1 1 1 1 1 1066 2163 928 982 1177 1177 3895 EELIAELQDCEGLIVR 16 Unmodified _EELIAELQDCEGLIVR_ 0 0 0 0 O43175 O43175 O43175 PHGDH D-3-phosphoglycerate dehydrogenase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.627380371094 3 629.655786 1885.94553 36422.3436696124 1.6234 0.0010222 121320 76.388 121320 76.389 706.04287195223 99.961 0.11046 99.961 99.892 100 0 5 3 2 NaN 0 0 0.0024686 1 23284 95.662 71.471 1 7279800 7791.2 7026 8016.9 6056.8 8346.6 6858.2 7979.8 7601.5 7817.7 30644 7373.3 6631.7 8062.9 6290.9 8445.3 6905.6 8136 8519.4 7720.6 29031 1 1 1 1 1 1 1 1 1 1 1067 99 929 983 1178 1178 EELMSSDLEETAGSTSIPK 19 Phospho (STY) _EELMSS(ph)DLEETAGSTSIPK_ EELMS(0.106)S(0.894)DLEETAGSTSIPK EELMS(-9.26)S(9.26)DLEET(-77.76)AGS(-132.94)T(-139.4)S(-145.62)IPK 0 0 1 0 O00567 O00567 O00567 NOP56 Nucleolar protein 56 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.084106445313 3 701.97283 2102.89666 33804.4531209154 1.6725 0.0011741 217640 152.77 217640 152.78 855.082159257432 82.968 1.474 82.968 82.683 84.157 0 146 50 4 0.896452186117132 0.00451865305124816 0.0185270876721063 5.8377E-11 2 19387 181.26 161.65 6 25021000 14686 14104 13984 13535 14549 14213 14463 15150 15405 32929 13894 13321 14128 13943 14731 14290 14752 16153 15160 31357 2 2 2 2 2 2 2 2 2 2 1068 54 930 984 1179;1180 1179 77 EEPLSEEEPCTSTAIASPEK 20 Phospho (STY) _EEPLS(ph)EEEPCTSTAIASPEK_ EEPLS(1)EEEPCTSTAIASPEK EEPLS(77.95)EEEPCT(-77.95)S(-86.97)T(-98.3)AIAS(-125.92)PEK 0 0 1 0 Q9Y2X3 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 914.768371582031 3 761.990661 2282.95015 33235.9505684134 1.1006 0.00083868 200490 152.77 200490 152.78 915.100388200785 65.898 0.57063 65.898 65.659 66.23 0 55 18 4 0.709356066430854 0.00272543618758893 0.0534499108751949 1.1488E-07 1 15464 149.64 135.33 5 26946000 10256 11295 11438 12702 14119 11045 15600 12413 13448 15317 9708.9 10678 11485 12929 14188 11191 15750 12860 13360 14710 1 1 1 1 1 1 1 1 1 1 1069 2258 931 985 1181 1181 4183;4184 EEPSQNDISPK 11 Phospho (STY) _EEPSQNDIS(ph)PK_ EEPSQNDIS(1)PK EEPS(-91.12)QNDIS(91.12)PK 0 0 1 0 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 891.443176269531 2 662.276847 1322.53914 33240.2133843832 1.7887 0.0011846 346020 229.16 346020 229.16 891.439982216041 43.016 0.67371 43.016 42.708 43.382 -7.1054E-15 57 22 3 0.966321478610834 0.000671250938589462 0.0107902955121421 1.1622E-10 1 9819 206.7 159.14 2 19512000 30251 25409 28109 23974 9622.9 30533 10111 20016 27613 5149.2 28617 23995 28202 24809 10880 30190 10748 20641 26504 5311.8 1 1 1 1 1 1 1 1 1 1 1070 2012 932 986 1182 1182 3655 EEQRSPFNDRFPLK 14 Phospho (STY) _EEQRS(ph)PFNDRFPLK_ EEQRS(1)PFNDRFPLK EEQRS(59.28)PFNDRFPLK 0 0 1 2 O94913 O94913 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.068359375 3 614.955997 1841.84616 35976.4922084725 2.0651 0.0012699 248430 152.78 248440 152.78 767.732138776697 66.597 0.54677 66.597 66.374 66.921 -1.4211E-14 38 18 3 0.985441872479044 0.00249729166880365 0.0310280634619532 0.033244 1 15643 59.281 36.407 1 11632000 11082 15026 11609 14351 11530 10368 9360.4 12366 17218 26254 10488 14191 11654 14712 11682 10645 9847.5 13118 16656 25008 1 1 1 1 1 1 1 1 1 1 1071 227 933 987 1183 1183 390 EERLSPR 7 Phospho (STY) _EERLS(ph)PR_ EERLS(1)PR EERLS(74.6)PR 0 0 1 1 Q6NYC8 Q6NYC8 Q6NYC8 PPP1R18 Phostensin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 399.206085205078 3 322.81833 965.43316 49704.449278797 0.0083125 2.6834E-06 236630 76.388 236630 76.388 399.205951174977 29.379 0.52944 29.379 29.163 29.693 0 40 17 3 0.971108968794798 0.00289007945844572 0.0806495589057199 0.010631 1 6529 74.6 16.641 1 20136000 14623 18501 14875 19206 15276 13728 15143 17589 18869 2335 13838 17481 14969 19589 15480 14058 15523 17564 18460 2605.8 1 1 1 1 1 1 1 1 1 1 1072 1250 934 988 1184 1184 2212 EESPQSK 7 Phospho (STY) _EES(ph)PQSK_ EES(0.994)PQS(0.006)K EES(22.32)PQS(-22.32)K 0 0 1 0 P11171 P11171 P11171 EPB41 Protein 4.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.837524414063 2 442.673498 883.332442 38299.3436203286 2.2634 0.001002 517680 229.16 517680 229.16 671.837021364284 29.364 0.32477 29.364 29.163 29.488 -3.5527E-15 25 10 3 0.976758002737172 0.000844113267473716 0.0192320086622705 4.6831E-05 1 6546 144.65 89.538 2 7658900 8716.8 13187 7711.8 15061 16667 7061.6 16058 13531 13883 11941 8244.6 12468 7931.6 15221 16375 7538.9 16316 13682 13790 11557 1 1 1 1 1 1 1 1 1 1 1073 360 935 989 1185 1185 582 EESYSPSK 8 Phospho (STY) _EESYS(ph)PSK_ EES(0.027)YS(0.956)PS(0.016)K EES(-15.44)Y(-48.78)S(15.44)PS(-17.64)K 0 0 1 0 Q96T23 Q96T23 Q96T23 RSF1 Remodeling and spacing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.856323242188 2 503.691887 1005.36922 36231.8398388547 1.8709 0.00094236 454970 229.16 454970 229.16 732.854836031085 39.743 0.43626 39.743 39.543 39.979 0 24 14 2 0.965311329033319 0.000486075967820901 0.01476895541612 0.0010037 1 9036 115.23 74.238 4 9187900 15036 20465 16563 20715 19767 15178 19907 18827 20086 8422.1 14233 19334 16630 21165 19872 15523 20262 18997 19811 8366.1 1 1 1 1 1 1 1 1 1 1 1074 1754 936 990 1186 1186 3216 EESYSPSKDR 10 Phospho (STY) _EESYS(ph)PSKDR_ EES(0.037)Y(0.009)S(0.576)PS(0.377)KDR EES(-11.87)Y(-17.92)S(1.85)PS(-1.85)KDR 0 0 1 1 Q96T23 Q96T23 Q96T23 RSF1 Remodeling and spacing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 868.919067382813 2 639.255914 1276.49728 33601.5262803844 2.0427 0.0013058 358480 229.16 358490 229.16 868.419891359207 33.7 0.46845 33.7 33.437 33.905 0 45 15 4 0.919547939246471 0.000493177691608365 0.00542275079480641 0.036798 1 7512 54.343 29.001 4 14855000 5301.7 7089.3 5089.5 6683.1 7994.7 6576.1 8997.8 7339.7 8374.3 3214.1 5016 6694.7 5174.5 6885.1 7955.1 6612 9093.7 7429.5 8289.4 3196.3 1 1 1 1 1 1 1 1 1 1 1075 1754 937 991 1187 1187 3216 EETKEDAEEKQ 11 Unmodified _EETKEDAEEKQ_ 0 0 0 2 P43487 P43487 P43487 RANBP1 Ran-specific GTPase-activating protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.031311035156 3 445.868533 1334.58377 38038.7702119038 1.2704 0.00056642 513970 229.16 513970 229.16 675.031058391057 34.554 0.48996 34.554 34.313 34.803 0 59 16 5 0.886697214861158 0.0123204475454552 0.0510648019001878 0.0074068 1 7757 82.069 41.956 1 192150000 63765 269370 64081 252060 69145 64363 87147 137590 287860 3524.3 60339 254360 64604 256850 70313 73817 93340 135280 275520 6502.8 1 1 1 1 1 1 1 1 1 1 1076 599 938 992 1188 1188 EETPGTPK 8 Phospho (STY) _EETPGT(ph)PK_ EET(0.001)PGT(0.999)PK EET(-29.7)PGT(29.7)PK 0 0 1 0 Q99442 Q99442 Q99442 SEC62 Translocation protein SEC62 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.863891601563 2 469.696973 937.379393 38363.9024507463 1.2451 0.00058483 487900 229.16 487900 229.16 698.860663117371 34.592 0.37446 34.592 34.428 34.803 0 23 12 2 0.790935923400667 0.00141990382548552 0.0126669012396772 0.0015048 1 7755 110.39 57.809 2 34300000 26294 23484 29288 23556 25063 29259 26586 26398 25125 4858.4 24892 22185 29270 24274 25704 29046 26949 26736 24853 5185.7 1 1 1 1 1 1 1 1 1 1 1077 1764 939 993 1189 1189 4744 EEYHSRKIK 9 Unmodified _EEYHSRKIK_ 0 0 0 2 REV__Q9NRA2 REV__Q9NRA2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.379333496094 3 397.21565 1188.62512 40359.4906150313 1.7243 0.00068491 576920 229.16 576920 229.16 626.378114433893 80.189 0.50353 80.189 79.901 80.404 1.4211E-14 35 16 3 0.891626063108437 0.00112873890118416 0.00863165377954923 0.056604 1 18784 35.511 1.6357 1 10361000 8849.2 6918.3 8820.4 7117.9 9465.7 10197 7902.1 8886.6 8610.4 6309.4 8373.5 6536.6 8888.2 7345.7 9546.3 10079 8138.1 9154.9 8465.8 6146.7 1 1 1 1 1 1 1 1 1 1 + 1078 2350 940 994 1190 1190 EFDELNPSAQR 11 Phospho (STY) _EFDELNPS(ph)AQR_ EFDELNPS(1)AQR EFDELNPS(113.52)AQR 0 0 1 0 P16615 P16615 P16615 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.873596191406 2 693.290289 1384.56602 35262.0996401316 2.0056 0.0013905 165270 114.58 165270 114.58 808.373321111468 60.221 0.66627 60.221 59.822 60.489 0 62 22 4 0.804451262743943 0.00116227740510108 0.0267871464955745 0.00019885 1 14090 113.52 88.137 1 26015000 22670 18003 23260 19085 29133 23215 27930 24162 19859 12764 21454 17013 23457 19597 29193 23121 28267 24584 19937 12578 1 1 1 1 1 1 1 1 1 1 1079 410 941 995 1191 1191 657 EFGSLPTTPSEQR 13 Phospho (STY) _EFGSLPTT(ph)PSEQR_ EFGSLPT(0.21)T(0.737)PS(0.052)EQR EFGS(-40.57)LPT(-5.45)T(5.45)PS(-11.51)EQR 0 0 1 0 O15400 O15400 O15400 STX7 Syntaxin-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 586.615173339844 3 510.227494 1527.66065 41241.26930658 1.3256 0.00067637 149710 76.388 149710 76.388 586.615448793143 62.773 0.47096 62.773 62.461 62.932 0 37 15 3 0.85502298210825 0.00151200204451603 0.0222583897983424 0.0303 1 14736 59.728 25.842 4 8876700 8352.7 9402.9 8245.6 10524 8819.9 7656 8736.5 9921.3 10005 9679.6 7903.4 8889 8315.9 10692 8916.6 7848.7 8931.7 10156 9818.3 9344.1 1 1 1 1 1 1 1 1 1 1 1080 91 942 996 1192 1192 4325 EFGSLPTTPSEQR 13 Phospho (STY) _EFGSLPTT(ph)PSEQR_ EFGSLPT(0.231)T(0.753)PS(0.017)EQR EFGS(-35.58)LPT(-5.14)T(5.14)PS(-16.58)EQR 0 0 1 0 O15400 O15400 O15400 STX7 Syntaxin-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.920288085938 2 764.837603 1527.66065 33272.2251656378 1.708 0.0013063 149810 114.58 149810 114.58 879.420978683915 62.767 0.70371 62.767 62.461 63.165 0 54 23 4 0.691710000689795 0.00159027677136752 0.0374113503426919 0.00032357 1 14740 104.81 81.687 4 23238000 12181 17050 15188 15141 13672 13234 15395 15373 17094 13395 11538 16096 15105 15632 13990 13402 15634 15741 16795 12969 1 1 1 1 1 1 1 1 1 1 1081 91 942 996 1193 1193 4325 EFGVYTNPQQK 11 Phospho (STY) _EFGVYT(ph)NPQQK_ EFGVY(0.069)T(0.931)NPQQK EFGVY(-11.29)T(11.29)NPQQK 0 0 1 0 REV__Q8WW32 REV__Q8WW32 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.980224609375 3 464.206142 1389.5966 40639.3328355312 1.8284 0.00084873 329110 152.77 329110 152.77 616.979663225684 36.305 0.39895 36.305 36.086 36.485 0 27 13 3 0.90467420732309 0.00112766103008452 0.0256086647162738 0.044694 1 8178 51.875 20.048 2 9098300 12205 6897.9 12999 7365.2 7111.5 12441 6998.1 8486.5 6250.7 4100 11552 6518.9 12972 7615.4 7562.1 12202 7108.5 8789.3 6199.3 4057.1 1 1 1 1 1 1 1 1 1 1 + 1082 2342 943 997 1194 1194 4863 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 Phospho (STY) _EFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK_ EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK EFIT(-257.65)GDVEPT(-182.61)DAES(-86.6)EWHS(86.6)ENEEEEKLAGDMK 0 0 1 1 Q99733 Q99733 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1080.75610351563 4 908.629005 3630.48691 29943.3811941947 1.3755 0.0012498 189160 171.87 189160 171.87 1080.75208927028 89.306 0.84191 89.306 88.763 89.605 1.4211E-14 102 28 7 0.970227002791226 0.00216408447995121 0.0268748615513974 6.2672E-57 2 20814 368.92 350.31 4 60281000 3861 3065.5 3298.4 3729 3290.7 3625.7 3759.7 7248.2 3674.9 116790 3651.4 2899.6 3354.4 3786.7 3346.4 3904.2 3802.2 10649 3629.6 110140 2 2 2 2 2 2 2 2 2 2 1083 1788 944 998 1195;1196 1196 3297 EFSGGSYSAK 10 Phospho (STY) _EFS(ph)GGSYSAK_ EFS(0.963)GGS(0.028)YS(0.009)AK EFS(15.39)GGS(-15.39)Y(-67.34)S(-20.31)AK 0 0 1 0 Q5VT25 Q5VT25 Q5VT25 CDC42BPA Serine/threonine-protein kinase MRCK alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.878967285156 2 556.718437 1111.42232 34770.3456767271 1.4359 0.00079941 411630 229.16 411630 229.16 785.879490321076 54.963 0.52317 54.963 54.728 55.251 0 37 17 3 0.728056383876383 0.00123817588834235 0.0104056731928302 2.2154E-06 1 12804 155.47 106.87 4 31066000 22126 62701 24705 60083 42786 21248 46466 49526 62997 116940 20946 59216 24956 61227 42419 23606 47574 52106 61458 111260 1 1 1 1 1 1 1 1 1 1 1084 1200 945 999 1197 1197 2099 EFTGSPPSSATK 12 Phospho (STY) _EFTGS(ph)PPSSATK_ EFT(0.024)GS(0.976)PPSSATK EFT(-16.03)GS(16.03)PPS(-45.8)S(-53.74)AT(-66.02)K 0 0 1 0 Q92609 Q92609 Q92609 TBC1D5 TBC1 domain family member 5 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.962463378906 3 430.186747 1287.53841 NaN NaN NaN NaN NaN NaN NaN NaN 52.904 1 52.904 52.404 53.404 0 NaN NaN NaN 0.023966 1 12321 80.706 54.347 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1085 1606 946 1000 1198 1198 2954;4711 EFTGSPPSSATKK 13 Phospho (STY) _EFT(ph)GSPPSSATKK_ EFT(0.579)GS(0.384)PPS(0.029)S(0.008)AT(0.001)KK EFT(1.78)GS(-1.78)PPS(-13.05)S(-18.63)AT(-30.37)KK 0 0 1 1 Q92609 Q92609 Q92609 TBC1D5 TBC1 domain family member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.383544921875 3 472.885068 1415.63338 37846.3683781499 2.1802 0.001031 484610 229.16 484610 229.16 702.048215863214 51.449 1.129 51.449 50.618 51.747 7.1054E-15 130 38 4 0.926856737712505 0.00762908993857091 0.0275454073693185 0.020276 1 11970 84.653 61.173 5 63649000 48752 33456 61456 31470 53978 57744 59307 49197 36760 10340 46180 31594 61070 32856 55272 56619 59496 49991 37227 10875 1 1 1 1 1 1 1 1 1 1 1086 1606 947 1001 1199 1199 2954;4711 EGASGRPGSPK 11 Phospho (STY) _EGASGRPGS(ph)PK_ EGASGRPGS(1)PK EGAS(-45.54)GRPGS(45.54)PK 0 0 1 1 Q15025 Q15025 Q15025 TNIP1 TNFAIP3-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.914672851563 2 561.750602 1121.48665 35715.6778958984 1.8253 0.0010254 407940 229.16 407950 229.16 790.913384574074 27.229 0.43626 27.229 27.03 27.466 0 32 14 3 0.985510857737835 0.000945177167678752 0.0114811692241282 0.00024232 1 6059 104.7 75.999 2 13596000 10385 6807.7 10073 6701.4 13146 9641 14693 11089 7197.6 2332.2 9825.5 6430.4 10202 6934.5 13174 9555 14676 11137 7419.8 2452.7 1 1 1 1 1 1 1 1 1 1 1087 1046 948 1002 1200 1200 1806 EGDEVGTGITDDNEDENSANQIAGK 25 Unmodified _EGDEVGTGITDDNEDENSANQIAGK_ 0 0 0 0 Q96SY0 Q96SY0 Q96SY0 VWA9 von Willebrand factor A domain-containing protein 9 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1012.81414794922 3 860.038957 2577.09504 NaN NaN NaN NaN NaN NaN NaN NaN 58.266 1 58.266 57.766 58.766 0 NaN NaN NaN 2.7335E-12 1 13644 194.25 174.16 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1088 1753 949 1003 1201 1201 EGDIIPPLTGATPPLIGHLK 20 Phospho (STY) _EGDIIPPLTGAT(ph)PPLIGHLK_ EGDIIPPLTGAT(1)PPLIGHLK EGDIIPPLT(-37.56)GAT(37.56)PPLIGHLK 0 0 1 0 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.155944824219 3 707.044812 2118.11261 34280.8946338971 2.171 0.001535 216080 152.77 216080 152.78 860.154540196044 100.17 0.16935 100.17 100.03 100.2 -1.4211E-14 13 5 4 0.972423008189968 0.0040866379162159 0.0974525562922424 9.027E-06 1 23380 135.68 110.09 2 34645000 10026 13643 8790.5 16469 13707 10916 12763 12631 18977 46618 9482.6 12904 8981 16648 13612 11299 13208 14008 18461 44188 1 1 1 1 1 1 1 1 1 1 1089 911 950 1004 1202 1202 4520 EGDPVSLSTPLETEFGSPSELSPR 24 Phospho (STY) _EGDPVSLSTPLETEFGSPSELS(ph)PR_ EGDPVSLSTPLETEFGS(0.004)PS(0.033)ELS(0.963)PR EGDPVS(-153.16)LS(-146.91)T(-138.98)PLET(-77.82)EFGS(-23.56)PS(-14.64)ELS(14.64)PR 0 0 1 0 Q9BUR4 Q9BUR4 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 947.452941894531 3 871.065218 2610.17382 32500.2463225888 1.6461 0.0014338 87694 76.387 87696 76.389 947.785732536446 96.636 0.69301 96.636 96.346 97.039 0 61 23 4 0.955084203562353 0.00178515524547319 0.0180603274728379 1.2277E-12 1 22464 204.99 172.91 7 9820300 2424.1 2912.5 3018.7 3280 2445.3 1891.7 2585.1 4027.5 2583.5 21287 2296 2753.4 2998.7 3323.1 2517.4 2025 2624.7 4598.6 2549.2 20138 1 1 1 1 1 1 1 1 1 1 1090 1836 951 1005 1203 1203 3363 EGDVLRRSEEHSPPR 15 2 Phospho (STY) _EGDVLRRS(ph)EEHS(ph)PPR_ EGDVLRRS(1)EEHS(1)PPR EGDVLRRS(93.26)EEHS(93.26)PPR 0 0 2 2 Q8IXT5 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.330322265625 3 641.941849 1922.80372 36927.1406761575 1.5975 0.0010255 118990 76.387 119000 76.388 718.329358795721 33.265 1.8421 33.265 32.471 34.313 0 166 63 3 0.831490716383223 0.00356755691086459 0.0329157830420384 0.0037473 2 7342 93.255 70.019 1 149740000 28869 32699 28069 32080 28162 29371 27733 33936 35034 4972.5 27315 30887 28310 32933 28574 29627 28450 34013 34259 5467.6 2 2 2 2 2 2 2 2 2 2 1091 1429 952 1006 1204;1205 1204 2603;2604 EGDVLTLLESER 12 Unmodified _EGDVLTLLESER_ 0 0 0 0 P62857 P62857 P62857 RPS28 40S ribosomal protein S28 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.434265136719 2 680.851364 1359.68817 35943.1548596871 1.9233 0.0013095 168290 114.58 168290 114.58 795.433131043811 93.554 0.46174 93.554 93.301 93.762 0 36 15 3 0.982512651189726 0.000785254244469716 0.0337013383196951 1.6548E-06 1 21775 147.37 110.3 1 10209000 12155 12414 12834 12534 10442 12666 11536 12158 12685 27353 11505 11728 12857 12864 10754 12735 11722 13039 12468 26038 1 1 1 1 1 1 1 1 1 1 1092 772 953 1007 1206 1206 EGEDGDQPTTPPKPLK 16 Phospho (STY) _EGEDGDQPTT(ph)PPKPLK_ EGEDGDQPT(0.022)T(0.978)PPKPLK EGEDGDQPT(-16.57)T(16.57)PPKPLK 0 0 1 1 P18858 P18858 P18858 LIG1 DNA ligase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 826.104675292969 3 596.939901 1787.79787 34278.5063639782 2.6084 0.001557 383900 229.16 383900 229.17 826.437636198968 53.575 0.82682 53.575 53.118 53.945 7.1054E-15 94 27 4 0.89957859587263 0.00262398690653166 0.0318650271410018 9.6141E-07 1 12442 153.06 119.81 2 65881000 25678 26663 26653 27510 26896 26537 27351 29112 29023 10964 24302 25193 26785 28179 27288 26696 27864 29432 28567 10997 1 1 1 1 1 1 1 1 1 1 1093 434 954 1008 1207 1207 4412 EGEEAGPGDPLLEAVPK 17 Unmodified _EGEEAGPGDPLLEAVPK_ 0 0 0 0 Q16543 Q16543 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.729248046875 3 569.952708 1706.8363 39072.3611198161 2.2967 0.001309 268050 152.78 268050 152.78 723.063008797129 81.481 0.43221 81.481 81.25 81.682 1.4211E-14 33 14 3 0.828052299438354 0.00120653040816003 0.0120155959018574 4.0361E-07 1 19080 144.29 72.114 1 10488000 9915.4 10006 9379.6 9926.7 9327.5 9270.1 10030 10875 10613 8178.9 9380.5 9451.5 9476.3 10187 9479.1 9356.7 10192 11092 10447 7953.1 1 1 1 1 1 1 1 1 1 1 1094 1106 955 1009 1208 1208 EGEEPTVYSDEEEPKDESAR 20 Phospho (STY) _EGEEPTVYS(ph)DEEEPKDESAR_ EGEEPTVYS(1)DEEEPKDESAR EGEEPT(-61.43)VY(-159.66)S(61.43)DEEEPKDES(-70.18)AR 0 0 1 1 O00264 O00264 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 945.762512207031 3 792.651473 2374.93259 32020.2741857329 0.83198 0.00065947 192740 152.78 192740 152.78 945.760956817604 47.136 0.48596 47.136 46.858 47.344 0 60 17 5 0.985733835409181 0.00429192198321995 0.0460545024634565 1.6052E-31 1 10864 299.4 265.28 4 84791000 10879 28304 11164 27022 26115 11332 28829 24862 30741 10519 10296 26730 11413 27572 25659 12248 29267 24731 30251 10480 1 1 1 1 1 1 1 1 1 1 1095 38 956 1010 1209 1209 61 EGESLEDLMK 10 Phospho (STY) _EGES(ph)LEDLMK_ EGES(1)LEDLMK EGES(178.49)LEDLMK 0 0 1 0 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.916748046875 2 615.751619 1229.48869 33752.7552564267 1.8581 0.0011441 372170 229.16 372170 229.16 844.914544353133 84.13 1.9483 84.13 83.67 85.618 0 176 67 3 0.936047003661381 0.0028842952234601 0.0796194603177455 2.0379E-09 2 19646 178.49 147.62 1 24936000 32591 27432 32303 25677 47093 32253 45596 36977 30326 159820 30838 25904 32722 26577 46881 32395 46067 41724 30570 151350 2 2 2 2 2 2 2 2 2 2 1096 380 957 1011 1210;1211 1211 616 EGFLESFKK 9 Phospho (STY) _EGFLES(ph)FKK_ EGFLES(1)FKK EGFLES(77.59)FKK 0 0 1 1 Q15070 Q15070 Q15070 OXA1L Mitochondrial inner membrane protein OXA1L MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.347595214844 3 388.849407 1163.52639 40642.3396481644 1.4143 0.00054996 589340 229.16 589340 229.16 618.347176512669 81.135 0.63619 81.135 80.898 81.534 0 44 21 3 0.932110603766222 0.00180733980238053 0.0377372971317305 0.008667 1 18989 77.593 60.653 1 10463000 10597 13227 13713 14956 7338.6 13158 6209 11733 16544 7950.1 10039 12505 13549 15222 7817.4 13266 6657.5 12064 15885 7757.5 1 1 1 1 1 1 1 1 1 1 1097 1057 958 1012 1212 1212 1825 EGGDGEEQDVGDAGR 15 Unmodified _EGGDGEEQDVGDAGR_ 0 0 0 0 Q8N1G4 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.385864257813 2 745.80313 1489.59171 33390.8383158285 2.1275 0.0015867 153640 114.58 153640 114.58 860.384617764684 28.29 0.34319 28.29 28.092 28.435 -3.5527E-15 37 11 4 0.937147087307788 0.00189477672360414 0.0557879694879646 1.0886E-41 1 6289 355.06 319.9 1 16042000 12406 19677 13301 17226 18358 12051 16705 17110 20735 1198.5 11742 18575 13401 17753 18311 12376 17194 17002 20288 1524.5 1 1 1 1 1 1 1 1 1 1 1098 1457 959 1013 1213 1213 EGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGK 34 Unmodified _EGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGK_ 0 0 0 0 P49006 P49006 P49006 MARCKSL1 MARCKS-related protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 969.182495117188 4 854.09739 3412.36045 31266.9345592719 2.056 0.0017561 134160 114.58 134160 114.58 968.929460948227 45.901 0.40628 45.901 45.673 46.079 0 64 13 6 0.989283915666463 0.00621889583054752 0.0495880324705796 9.2818E-13 1 10571 203.73 191.88 1 71129000 9840.4 22441 11871 23827 10005 12520 11198 14904 24893 9590.2 9319.2 21207 11816 24198 10293 13102 11716 15146 23982 9375.2 1 1 1 1 1 1 1 1 1 1 1099 631 960 1014 1214 1214 EGGRTPTLEILK 12 Phospho (STY) _EGGRT(ph)PTLEILK_ EGGRT(0.995)PT(0.005)LEILK EGGRT(23.24)PT(-23.24)LEILK 0 0 1 1 P07332 P07332 P07332 FES Tyrosine-protein kinase Fes/Fps MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.017395019531 3 465.241075 1392.7014 40471.3176829621 2.091 0.0009728 328380 152.78 328380 152.78 618.016342264645 74.224 0.52439 74.224 73.955 74.479 -1.4211E-14 53 17 4 0.970151669046791 0.00124581169977427 0.0289556557901747 0.0085528 1 17402 91.657 20.416 2 21131000 8882.9 3935.9 10124 3408.9 7801.1 9619.7 10062 7892.8 3575.5 4096.9 8410.1 3715.1 10098 3632.1 8079.6 9351.2 9956.1 8107.5 3803 4040.4 1 1 1 1 1 1 1 1 1 1 1100 317 961 1015 1215 1215 4379 EGGSKSDSEDITR 13 Phospho (STY) _EGGSKS(ph)DSEDITR_ EGGS(0.16)KS(0.657)DS(0.182)EDITR EGGS(-6.13)KS(5.56)DS(-5.56)EDIT(-32.58)R 0 0 1 1 O00470 O00470 O00470 MEIS1 Homeobox protein Meis1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.644958496094 3 487.534875 1459.5828 38956.8252507212 1.1923 0.00058127 313360 152.78 313360 152.78 640.31060268823 34.611 0.545 34.611 34.37 34.915 0 43 18 3 0.982432434979049 0.00384717124297416 0.0207492875935012 0.010506 1 7744 70.837 50.745 4 40392000 21691 14960 23309 17476 27089 26053 28046 22923 15913 4421.5 20531 14146 23426 17928 27269 25701 28170 23248 16215 4693.9 1 1 1 1 1 1 1 1 1 1 1101 50 962 1016 1216 1216 75 EGGTASVATGPDSPSPVPLPPGKPALPGADGTPFGCPPGR 40 Phospho (STY) _EGGTASVATGPDS(ph)PSPVPLPPGKPALPGADGTPFGCPPGR_ EGGTASVAT(0.003)GPDS(0.498)PS(0.498)PVPLPPGKPALPGADGT(0.001)PFGCPPGR EGGT(-37.56)AS(-35.49)VAT(-22.25)GPDS(0)PS(0)PVPLPPGKPALPGADGT(-27.46)PFGCPPGR 0 0 1 1 Q6SPF0 Q6SPF0 Q6SPF0 SAMD1 Atherin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1077.04724121094 4 962.210565 3844.81315 30135.3387840781 1.0976 0.0010561 119080 114.58 119090 114.59 1077.29627737905 88.182 0.88911 88.182 87.791 88.68 0 135 30 8 0.984729668595973 0.0113342434136959 0.147743880921087 0.040892 1 20568 47.132 38.294 6 75677000 7360.5 6034.8 7629.5 5699.5 20027 7498.9 21223 11015 5521.9 16188 6965.9 5698.9 7821 5901.4 19593 7510.8 21116 11400 6114.4 15498 1 1 1 1 1 1 1 1 1 1 1102 1276 963 1017 1217 1217 2273;2274 EGIESGDPGTDDGR 14 Unmodified _EGIESGDPGTDDGR_ 0 0 0 0 Q12797 Q12797 Q12797 ASPH Aspartyl/asparaginyl beta-hydroxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 817.378540039063 2 702.797317 1403.58008 36101.0398462085 1.1559 0.00081238 163040 114.58 163040 114.58 817.378652303317 34.356 0.29896 34.356 34.221 34.52 0 13 9 2 0.74480954660719 0.000366537561191615 0.0130201360806074 0.00098565 1 7718 136.82 118.77 1 9601400 9469 8465.9 9582.8 8595.3 19953 10310 20669 13653 8869.2 3398 8960.5 7998.2 9771.1 8845 19635 10306 20681 13668 9251.7 3515.6 1 1 1 1 1 1 1 1 1 1 1103 900 964 1018 1218 1218 EGIPALDNFLDKL 13 Unmodified _EGIPALDNFLDKL_ 0 0 0 1 P13639 P13639 P13639 EEF2 Elongation factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.370788574219 3 482.260925 1443.76095 39645.8338779891 1.6395 0.00079068 316790 152.78 316790 152.78 635.370420463098 102.03 0.19718 102.03 101.87 102.07 0 11 6 3 0.906869360972614 0.00408272717907184 0.047844544122174 0.00026542 1 24029 102.33 66.568 1 20436000 7205.7 5245 7244 5950.9 6326 7463 7802 7586.7 7328.2 14705 6818.6 4958.8 7283.7 6091.4 6494.2 7442.3 7858 8048.3 7250.8 14022 1 1 1 1 1 1 1 1 1 1 1104 378 965 1019 1219 1219 EGLELPEDEEEK 12 Unmodified _EGLELPEDEEEK_ 0 0 0 0 P07900;Q58FF6;Q58FF7;Q58FG0;P08238 P07900;P08238 P08238 HSP90AA1;HSP90AB4P;HSP90AB3P;HSP90AA5P;HSP90AB1 Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.994262695313 3 472.884071 1415.63038 39232.2794928157 1.6149 0.00076366 323070 152.78 323070 152.78 625.659725542552 65.315 0.72192 65.315 64.995 65.717 0 96 24 5 0.937323442583552 0.00559113218849005 0.102758330622765 5.126E-05 1 15301 127.56 95.716 1 178270000 13350 14933 14527 16073 12261 12227 12192 15134 17054 4214.8 12637 14113 14532 16371 12580 12472 12547 15195 16621 4319 1 1 1 1 1 1 1 1 1 1 1105 331;323 966 1020 1220 1220 EGLELPEDEEEKK 13 Unmodified _EGLELPEDEEEKK_ 0 0 0 1 P07900;Q58FF6;Q58FF7;Q58FG0;P08238 P07900;P08238 P08238 HSP90AA1;HSP90AB4P;HSP90AB3P;HSP90AA5P;HSP90AB1 Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.080993652344 3 515.582392 1543.72535 36535.8587487278 2.2108 0.0011398 444470 229.16 444480 229.16 745.079387465037 62.04 0.51654 62.04 61.803 62.319 7.1054E-15 69 17 5 0.957348879544352 0.00583438937937634 0.0436979041179151 0.00011232 1 14541 123.38 89.205 1 78498000 32962 40678 38020 44883 29110 36268 29071 39120 43940 20300 31209 38451 37884 45689 30080 36812 30001 39742 42725 20020 1 1 1 1 1 1 1 1 1 1 1106 331;323 967 1021 1221 1221 EGLISQDGSSLEALLR 16 Phospho (STY) _EGLISQDGSS(ph)LEALLR_ EGLISQDGS(0.081)S(0.919)LEALLR EGLIS(-49.5)QDGS(-10.53)S(10.53)LEALLR 0 0 1 0 Q92785 Q92785 Q92785 DPF2 Zinc finger protein ubi-d4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 999.011413574219 2 884.429856 1766.84516 32620.6323209048 1.6898 0.0014945 129550 114.58 129560 114.58 999.011278027916 99.66 0.14084 99.66 99.579 99.72 0 10 4 3 0.931772536211844 0.00102937627140899 0.0316891896773376 1.3398E-15 1 23189 219.72 175.47 3 21683000 7925.9 11007 9909.1 11193 21181 9712.2 22933 16430 10552 76822 7507.4 10399 10005 11457 20842 10030 22921 18535 10937 72717 1 1 1 1 1 1 1 1 1 1 1107 1619 968 1022 1222 1222 2994 EGMVSSGQNLLAVESQ 16 Phospho (STY) _EGMVSSGQNLLAVES(ph)Q_ EGMVSSGQNLLAVES(1)Q EGMVS(-102.77)S(-100.64)GQNLLAVES(100.64)Q 0 0 1 0 P43378 P43378 P43378 PTPN9 Tyrosine-protein phosphatase non-receptor type 9 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.461181640625 2 864.879142 1727.74373 NaN NaN NaN NaN NaN NaN NaN NaN 80.223 1 80.223 79.723 80.723 0 NaN NaN NaN 0.00012267 1 18785 108.25 94.048 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1108 597 969 1023 1223 1223 973 EGNPEEDLTADK 12 Unmodified _EGNPEEDLTADK_ 0 0 0 0 P40121 P40121 P40121 CAPG Macrophage-capping protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.639404296875 3 439.865011 1316.5732 39286.3510679259 1.0347 0.00045513 347320 152.78 347320 152.78 592.639909317788 54.373 0.35253 54.373 54.148 54.5 0 20 11 2 0.962832760018381 0.000514228854693939 0.00351760683187094 0.0001017 1 12687 116.51 91.656 1 24769000 16921 10758 15417 10168 9678.5 16167 8794.3 11103 10416 3070.4 16006 10160 15539 10572 10150 15879 9038.8 11425 10209 3148.1 1 1 1 1 1 1 1 1 1 1 1109 569 970 1024 1224 1224 EGNTTEDDFPSSPGNGNK 18 Phospho (STY) _EGNTTEDDFPSS(ph)PGNGNK_ EGNTTEDDFPS(0.007)S(0.993)PGNGNK EGNT(-103.14)T(-97.01)EDDFPS(-21.69)S(21.69)PGNGNK 0 0 1 0 Q15007 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.027282714844 3 649.253096 1944.73746 34235.9870052279 2.1982 0.0014272 235310 152.77 235310 152.78 802.361903663907 49.823 0.73055 49.823 49.425 50.156 -7.1054E-15 98 24 5 0.980523218549174 0.00234795895829945 0.0177770685903192 6.6664E-08 1 11514 166.27 153.42 4 59228000 11379 13222 13229 14300 12243 12872 11889 13661 14856 12390 10775 12497 13202 14594 12480 13000 12200 14046 14533 11983 1 1 1 1 1 1 1 1 1 1 1110 1042 971 1025 1225 1225 1802 EGPEPPEEVPPPTTPPVPK 19 Phospho (STY) _EGPEPPEEVPPPTT(ph)PPVPK_ EGPEPPEEVPPPT(0.24)T(0.76)PPVPK EGPEPPEEVPPPT(-5.01)T(5.01)PPVPK 0 0 1 0 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.108337402344 3 691.997528 2072.97075 33700.7613185593 2.2726 0.0015726 220770 152.78 220780 152.78 845.106720012168 68.118 1.5264 68.118 67.299 68.825 0 217 51 6 0.699250907177313 0.00379853575034011 0.124075656986538 0.014859 1 15875 76.049 62.063 2 95756000 14623 20867 15904 17023 13374 15516 13214 17283 19671 17890 13842 19691 15909 17689 13725 15675 13635 17807 19135 17246 1 1 1 1 1 1 1 1 1 1 1111 624 972 1026 1226 1226 4468 EGPEPPEEVPPPTTPPVPK 19 Phospho (STY) _EGPEPPEEVPPPTT(ph)PPVPK_ EGPEPPEEVPPPT(0.22)T(0.78)PPVPK EGPEPPEEVPPPT(-5.49)T(5.49)PPVPK 0 0 1 0 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 634.083740234375 4 519.249965 2072.97075 38895.0749651815 2.203 0.0011439 220670 114.58 220670 114.58 634.081651226185 68.079 1.4971 68.079 67.328 68.825 0 181 50 5 0.970567452819194 0.00494923250049945 0.0525389343442849 0.011201 1 16068 83.064 63.772 2 30276000 6029.3 6945.5 6805.6 7708.5 5280.5 6431.2 5140.7 7159 9496 3655.9 5708.1 6565.5 6789.3 7847.8 5450.9 6519.3 5358.8 7263 9185 3608.2 1 1 1 1 1 1 1 1 1 1 1112 624 972 1026 1227 1227 4468 EGQEDQGLTK 10 Unmodified _EGQEDQGLTK_ 0 0 0 0 P26599;O95758 P26599 P26599 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 781.92626953125 2 552.762017 1103.50948 36303.3391737321 1.5815 0.00087417 414580 229.16 414580 229.16 781.925661866538 39.847 0.37481 39.847 39.688 40.063 0 18 12 2 0.958252299216318 0.00042534779016769 0.00617607711237378 0.00042148 1 9075 128.01 88.993 1 9332600 22561 19235 21603 18946 23318 21196 21014 22246 21165 7936.8 21345 18169 21825 19507 23530 21174 21505 22513 20878 7988.3 1 1 1 1 1 1 1 1 1 1 1113 483 973 1027 1228 1228 EGRGESENAGTNQETR 16 Phospho (STY) _EGRGES(ph)ENAGTNQETR_ EGRGES(1)ENAGTNQETR EGRGES(85.37)ENAGT(-85.37)NQET(-123.77)R 0 0 1 1 Q08170 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.970397949219 3 605.581547 1813.72281 37894.8388175934 1.9287 0.001168 126140 76.388 126140 76.389 681.969445116037 22.01 0.40107 22.01 21.883 22.284 3.5527E-15 40 13 5 0.992868769842281 0.00811870987112023 0.208172147345737 1.338E-07 1 4958 167.73 140.03 3 5618200 518.89 1322.1 541.81 1399.5 2306.8 383.31 1770.4 1898.9 1160 542.6 491.08 1249.4 564.85 1415.9 2228.6 449.59 1811.1 1862.3 1170.5 554.87 1 1 1 1 1 1 1 1 1 1 1114 886 974 1028 1229 1229 1441 EGSEFSFSDGEVAEK 15 Phospho (STY) _EGSEFSFS(ph)DGEVAEK_ EGSEFS(0.003)FS(0.997)DGEVAEK EGS(-45.44)EFS(-25.83)FS(25.83)DGEVAEK 0 0 1 0 Q9BVS4 Q9BVS4 Q9BVS4 RIOK2 Serine/threonine-protein kinase RIO2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.334655761719 3 566.557457 1696.65054 37832.5661348684 1.9013 0.0010772 269660 152.78 269660 152.78 719.332409332591 76.466 0.5813 76.466 76.126 76.707 0 43 19 3 0.544508617163482 0.00103730372798269 0.0331340921018964 2.1302E-05 1 17931 134.08 116.16 3 7517500 6423.5 7402.4 6477.9 7787.6 8299.2 7648.8 6485.2 6604 6516.2 35949 6078.5 6995 6538.6 7970.4 8288.9 7727.6 6689.3 7748 6428.2 34003 1 1 1 1 1 1 1 1 1 1 1115 1846 975 1029 1230 1230 3376 EGSGSSGTGEQKEDQKEEK 19 Unmodified _EGSGSSGTGEQKEDQKEEK_ 0 0 0 2 P38646 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.643005371094 4 503.22781 2008.88214 37391.2522353109 2.3039 0.0011594 455390 229.16 455390 229.16 732.641463736499 31.647 0.25729 31.647 31.502 31.76 -3.5527E-15 24 8 3 0.636869340930841 0.000695371946253873 0.00297077115222505 5.3692E-05 1 7074 104.86 79.804 1 12962000 11352 12589 11730 11402 10647 10532 10065 13200 12172 2115.5 10744 11886 11776 11766 10862 10633 10330 13201 11920 2297.5 1 1 1 1 1 1 1 1 1 1 1116 564 976 1030 1231 1231 EGSPANWK 8 Phospho (STY) _EGS(ph)PANWK_ EGS(1)PANWK EGS(76.68)PANWK 0 0 1 0 O96019 O96019 O96019 ACTL6A Actin-like protein 6A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.861328125 2 484.697307 967.380061 36446.8048083868 2.1602 0.0010471 472800 229.16 472800 229.16 713.860588496956 56.378 0.97845 56.378 55.95 56.928 -7.1054E-15 109 32 5 0.557241612665645 0.00496659358611782 0.154550734836341 0.015147 1 13114 76.682 46.478 1 365020000 69616 134440 74585 132290 70910 64176 69122 88232 136370 14854 65893 126990 74769 134870 72215 67696 72287 88018 131700 16029 1 1 1 1 1 1 1 1 1 1 1117 275 977 1031 1232 1232 460 EGSPAPLEPEPGAAQPK 17 Phospho (STY) _EGS(ph)PAPLEPEPGAAQPK_ EGS(1)PAPLEPEPGAAQPK EGS(147)PAPLEPEPGAAQPK 0 0 1 0 Q01167 Q01167 Q01167 FOXK2 Forkhead box protein K2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.379516601563 3 585.604742 1753.7924 35189.4222429378 1.9165 0.0011223 260880 152.78 260890 152.78 738.714350029509 56.41 0.59766 56.41 56.096 56.693 0 70 19 5 0.968052083697798 0.00256326108103516 0.0380059209457524 3.2862E-07 1 13146 147 125.34 1 76486000 15133 14863 16042 16984 18512 13242 16577 18528 19445 15197 14323 14053 16127 17249 18616 13535 17045 18838 19064 14739 1 1 1 1 1 1 1 1 1 1 1118 833 978 1032 1233 1233 1343 EGSPIPHDPEFGSK 14 Phospho (STY) _EGS(ph)PIPHDPEFGSK_ EGS(1)PIPHDPEFGSK EGS(105.8)PIPHDPEFGS(-105.8)K 0 0 1 0 P85037 P85037 P85037 FOXK1 Forkhead box protein K1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.338623046875 3 526.227494 1575.66065 37587.3373979696 1.9339 0.0010177 290320 152.78 290320 152.78 679.002867151612 60.217 0.92087 60.217 59.707 60.628 0 120 31 5 0.849806612965694 0.00986180403653171 0.11727230662067 1.0199E-06 1 14061 138.66 113.29 2 263270000 24543 26661 24865 26051 18232 26828 21304 26680 28334 9804 23225 25182 24943 26798 18943 26873 21731 27063 27659 9849.1 1 1 1 1 1 1 1 1 1 1 1119 816 979 1033 1234 1234 1306 EGSQGELTPANSQSR 15 Phospho (STY) _EGSQGELT(ph)PANSQSR_ EGSQGELT(1)PANSQSR EGS(-65.63)QGELT(46.63)PANS(-46.63)QS(-85.5)R 0 0 1 0 Q13098 Q13098 Q13098 GPS1 COP9 signalosome complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 935.431274414063 2 820.84923 1639.68391 33026.5881170966 2.1957 0.0018023 139590 114.58 139590 114.58 935.431496504396 31.232 0.383 31.232 31.03 31.413 0 26 12 3 0.957929892706804 0.000672160443172334 0.0301944147598218 1.9187E-16 1 6970 247.44 199 4 7194300 3694 5465.9 4132 5639.9 5095.5 4426.6 5788.1 5318.5 5369.1 1163 3497.1 5164.4 4148.6 5760.8 5123.4 4504.6 5847.1 5335.4 5315.4 1218.2 1 1 1 1 1 1 1 1 1 1 1120 922 980 1034 1235 1235 4525 EGSRPMMGDHR 11 Oxidation (M),Phospho (STY) _EGS(ph)RPM(ox)MGDHR_ EGSRPM(0.561)M(0.439)GDHR EGS(1)RPMMGDHR EGSRPM(1.07)M(-1.07)GDHR EGS(58.75)RPMMGDHR 0 1 1 1 Q14151 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.232421875 3 456.844333 1367.51117 43364.7286186288 1.499 0.00068479 167210 76.387 167210 76.388 533.231866658705 21.956 0.2804 21.956 21.83 22.111 0 28 9 4 0.969231982804376 0.00761301992579229 0.123519120102043 0.033693 1 4949 58.752 17.212 2 4100500 1555.4 1312.8 1635.9 1833.3 1114 1352.6 1415.5 1639.2 1518.5 2043.7 1472.1 1243.1 1636.9 1842.8 1165.7 1384.7 1429.2 1694.7 1493.9 1962.3 1 1 1 1 1 1 1 1 1 1 1121 988 981 1035 1236 1236 130 1669 EGSRPMMGDHR 11 Phospho (STY) _EGS(ph)RPMMGDHR_ EGS(1)RPMMGDHR EGS(85.84)RPMMGDHR 0 0 1 1 Q14151 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 527.901062011719 3 451.512694 1351.51625 43959.9579891652 0.65224 0.00029449 169180 76.388 169180 76.388 527.900374418716 27.014 0.26622 27.014 26.886 27.152 0 24 8 4 0.779763299758634 0.00267940534339118 0.0254707266953338 0.005004 1 6018 85.837 53.775 1 12752000 11623 12164 12704 13435 10603 13124 11881 11448 13821 3547.2 11002 11498 12707 13712 10904 13154 12086 11655 13555 3605.1 1 1 1 1 1 1 1 1 1 1 1122 988 981 1036 1237 1237 1669 EGTLTQVPLAPPPPGAPPSPAPAR 24 Phospho (STY) _EGTLTQVPLAPPPPGAPPS(ph)PAPAR_ EGTLTQVPLAPPPPGAPPS(1)PAPAR EGT(-60.62)LT(-49.55)QVPLAPPPPGAPPS(49.55)PAPAR 0 0 1 0 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.804870605469 3 800.077064 2397.20936 33125.9838321813 1.7817 0.0014255 95479 76.391 95481 76.392 876.802310174538 76.947 0.69461 76.947 76.587 77.281 0 66 23 4 0.961113636164627 0.00240076954812623 0.0201390433893117 0.0085074 1 18024 79.408 62.039 3 18308000 7445.1 7807 4871.1 7256.9 5439.7 5036.6 4933.2 6269.7 8267.7 27431 7035.3 7371.9 5058.9 7449 5482.7 5214.7 5137.2 7067.8 8016.3 25975 1 1 1 1 1 1 1 1 1 1 1123 624 982 1037 1238 1238 1026 EGTPGSPGR 9 Phospho (STY) _EGTPGS(ph)PGR_ EGT(0.02)PGS(0.98)PGR EGT(-16.9)PGS(16.9)PGR 0 0 1 0 Q99856 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.774597167969 2 469.192389 936.370225 39960.8328899478 1.4103 0.00066168 244210 114.58 244210 114.58 583.773842329312 25.227 0.37831 25.227 25.064 25.442 0 27 12 3 0.977811253694339 0.00294222425590356 0.0406641596634368 0.00067803 1 5638 101.79 39.228 2 12209000 5321.9 6093.9 6469.7 6180.3 4387.5 6790.3 4446 5233 6649.9 3307.8 5040.2 5757.2 6423.2 6350.3 4578.3 6765.8 4583.2 5409.1 6468 3235.8 1 1 1 1 1 1 1 1 1 1 1124 1795 983 1038 1239 1239 3303 EGTPPPPPPSR 11 Phospho (STY) _EGT(ph)PPPPPPSR_ EGT(1)PPPPPPSR EGT(39.29)PPPPPPS(-39.29)R 0 0 1 0 Q9Y618 Q9Y618 Q9Y618 NCOR2 Nuclear receptor corepressor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.85986328125 2 606.276453 1210.53835 36548.9155628414 2.2299 0.0013519 188990 114.58 188990 114.58 720.858237956599 30.42 1.1371 30.42 29.835 30.973 0 62 37 2 0.962642950908826 0.000485880701430544 0.0206412863224649 0.022986 1 6760 66.953 28.551 2 5701700 11327 9997.7 10967 9799.3 15226 11041 13997 10293 9880.5 4530 10717 9443.4 11114 10094 15179 11010 14194 10490 9923.7 4503.7 1 1 1 1 1 1 1 1 1 1 1125 2306 984 1039 1240 1240 4855 EGTQASEGYFSQSQEEEFAQSEELCAK 27 Phospho (STY) _EGTQASEGYFSQS(ph)QEEEFAQSEELCAK_ EGTQASEGYFS(0.005)QS(0.995)QEEEFAQSEELCAK EGT(-82.43)QAS(-62.71)EGY(-105.24)FS(-23.01)QS(23.01)QEEEFAQS(-134.67)EELCAK 0 0 1 0 Q16643 Q16643 Q16643 DBN1 Drebrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1203.53503417969 3 1050.42369 3148.24925 28368.3482393547 1.6026 0.0016834 145440 152.78 145440 152.78 1203.53347875162 83.2 0.5257 83.2 82.972 83.498 0 80 17 6 0.990600028296813 0.0107750662026375 0.0996295723539294 1.1192E-17 3 19456 220.14 201.84 6 46896000 4987.9 4169.5 5040.6 4800.3 14063 2974.9 16680 14503 4562.1 186500 4720 3942.4 5187.9 4860.9 13764 3559.1 16521 19720 5015.4 175950 3 3 3 3 3 3 3 3 3 3 1126 1110 985 1040 1241;1242;1243 1241 1933 EGVIEAGAFQGSPAPPLPSVMSPSR 25 Phospho (STY) _EGVIEAGAFQGSPAPPLPSVMS(ph)PSR_ EGVIEAGAFQGSPAPPLPS(0.322)VMS(0.538)PS(0.14)R EGVIEAGAFQGS(-33.11)PAPPLPS(-2.23)VMS(2.23)PS(-5.86)R 0 0 1 0 P53367 P53367 P53367 ARFIP1 Arfaptin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 931.130187988281 3 854.408373 2560.20329 31355.4177571208 1.8528 0.0015831 89403 76.387 89405 76.389 931.129717316098 93.61 0.51719 93.61 93.361 93.878 0 50 17 4 0.976373030556206 0.00216290111370981 0.044105872758546 0.010385 1 21792 74.605 64.089 4 13686000 3134.9 4021.9 3888.5 4057.6 2696.2 3300.3 3489.3 5226 4536.1 35810 2969.2 3799.5 3859.1 4151.9 2818.7 3433.5 3542.4 6246.5 4431.4 33841 1 1 1 1 1 1 1 1 1 1 1127 701 986 1041 1244 1244 1177 EGYGGFR 7 Phospho (STY) _EGY(ph)GGFR_ EGY(1)GGFR EGY(44.97)GGFR 0 0 1 0 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.747680664063 2 433.165643 864.316733 43325.1478345859 1.1418 0.00049457 264520 114.58 264520 114.58 547.747120874304 60.759 0.9611 60.759 60.459 61.42 0 62 32 3 0.91459431986698 0.00126829731483212 0.0412053796530782 0.04087 1 14223 44.973 44.973 1 13546000 11682 18642 11984 20374 6788.3 10145 7181 11808 20998 3476 11056 17621 11987 20649 7214.1 10653 7669.1 11885 20133 3546.4 1 1 1 1 1 1 1 1 1 1 1128 2012 987 1042 1245 1245 4886 EHGHSYSNR 9 Phospho (STY) _EHGHS(ph)YSNR_ EHGHS(0.723)Y(0.002)S(0.275)NR EHGHS(4.21)Y(-24.97)S(-4.21)NR 0 0 1 0 O00418 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.872497558594 3 389.48401 1165.4302 47382.8835136522 0.70431 0.00027432 196130 76.388 196130 76.388 465.871906331653 18.58 0.49901 18.58 18.464 18.963 0 26 19 2 0.714757437717227 0.00257083344835474 0.0240535913624927 0.030825 1 4254 48.822 35.314 3 749000 374.7 410.91 341.3 324.79 292.82 447.67 556.16 889.34 488.83 1448.1 354.44 387.68 345.49 340.72 303.67 451.5 551.63 918.59 485.19 1384.1 1 1 1 1 1 1 1 1 1 1 1129 45 988 1043 1246 1246 66 EHSLQVSPSLEK 12 Phospho (STY) _EHSLQVS(ph)PSLEK_ EHSLQVS(1)PSLEK EHS(-76.5)LQVS(38.37)PS(-38.37)LEK 0 0 1 0 O95235 O95235 O95235 KIF20A Kinesin-like protein KIF20A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.3369140625 3 478.560585 1432.65992 40333.8876641608 1.8262 0.00087392 319240 152.78 319240 152.78 631.670509665908 57.177 0.37648 57.177 56.958 57.334 0 30 12 3 0.864288104660961 0.00286144903544053 0.0573055603626317 6.5751E-08 1 13366 169.92 134.26 3 20422000 13940 19372 13292 18617 12784 14977 13934 17126 21946 11748 13188 18295 13417 19103 13027 15223 14348 17449 21314 11458 1 1 1 1 1 1 1 1 1 1 1130 236 989 1044 1247 1247 407 EIAQDFK 7 Unmodified _EIAQDFK_ 0 0 0 0 P84243;Q71DI3;Q16695;P68431 P84243;Q71DI3 Q71DI3 H3F3A;HIST2H3A;HIST3H3;HIST1H3A Histone H3.3;Histone H3.2;Histone H3.1t;Histone H3.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.882507324219 2 425.718893 849.423233 38918.1289444477 2.0079 0.0008548 538300 229.16 538300 229.16 654.881969891463 61.684 0.82061 61.684 61.36 62.181 0 96 27 5 0.994894749285923 0.00388646431557783 0.103740508838217 0.04192 1 14445 83.005 18.741 1 98840000 89634 73099 88326 75574 59731 82449 61569 73566 72823 9431.3 84812 69069 88668 77556 62340 82242 62891 74421 71377 10583 1 1 1 1 1 1 1 1 1 1 1131 790;815 990 1045 1248 1248 EIAQDFKTDLR 11 Unmodified _EIAQDFKTDLR_ 0 0 0 1 P84243;Q71DI3;Q16695;P68431 P84243;Q71DI3 Q71DI3 H3F3A;HIST2H3A;HIST3H3;HIST1H3A Histone H3.3;Histone H3.2;Histone H3.1t;Histone H3.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.678527832031 3 445.90162 1334.68303 41540.3906578519 1.8378 0.00081947 342620 152.78 342620 152.78 598.676970221284 69.408 0.54863 69.408 69.12 69.669 0 52 18 4 0.982378920907052 0.00286325707316308 0.0429843458560222 0.0081464 1 16281 91.62 42.172 1 12562000 10172 8108.8 11950 8271.9 9259.1 10118 8322.8 8726.9 8826.2 4090.8 9632.3 7661 11896 8513 9542.3 10049 8530.6 8930.9 8687.5 4053.9 1 1 1 1 1 1 1 1 1 1 1132 790;815 991 1046 1249 1249 EIDCLSPEAQK 11 Phospho (STY) _EIDCLS(ph)PEAQK_ EIDCLS(1)PEAQK EIDCLS(201.08)PEAQK 0 0 1 0 Q32MZ4 Q32MZ4 Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 914.451965332031 2 685.2889 1368.56325 32877.1541216347 1.5932 0.0010918 334400 229.16 334400 229.16 914.451383780955 60.749 0.43368 60.749 60.546 60.979 0 31 14 3 0.951589431192975 0.00100059729966605 0.0249719155528679 2.1414E-10 1 14250 201.08 149.36 1 15940000 22289 12705 22598 13483 10184 21768 10804 14862 13077 13406 21092 12006 22587 13930 11079 21388 11030 15579 12807 12967 1 1 1 1 1 1 1 1 1 1 1133 1125 992 1047 1250 1250 1959 EIDDTYIEDAADVDAR 16 Unmodified _EIDDTYIEDAADVDAR_ 0 0 0 0 Q99459 Q99459 Q99459 CDC5L Cell division cycle 5-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1020.98687744141 2 905.90251 1809.79047 31720.9332621991 1.8273 0.0016554 126480 114.58 126480 114.58 1020.98520155982 74.991 0.49248 74.991 74.766 75.259 0 35 16 3 0.959040252752808 0.00108097463468507 0.0161951925017239 2.8639E-15 1 17595 230.06 190.14 1 12496000 8624.2 7475 8144.4 8319.6 7463.3 8818.5 7199.5 9724.1 8535.6 28582 8158.9 7066.2 8219.7 8498.8 7611.5 8882.1 7377.8 10580 8365.4 27139 1 1 1 1 1 1 1 1 1 1 1134 1765 993 1048 1251 1251 EIEDPEDR 8 Unmodified _EIEDPEDR_ 0 0 0 0 P27824 P27824 P27824 CANX Calnexin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.303588867188 2 501.722361 1001.43017 41261.5088229087 0.8749 0.00043895 228380 114.58 228380 114.58 616.303641416231 37.407 0.75484 37.407 37.044 37.799 0 67 29 3 0.821769044180255 0.00101002583919028 0.00377414154986634 0.00010073 1 8432 141.39 96.778 1 121620000 63359 58341 59777 59950 61721 57180 60932 58940 64033 8209.4 59941 55122 60420 61412 62511 57476 62147 59300 63050 9094.2 1 1 1 1 1 1 1 1 1 1 1135 492 994 1049 1252 1252 EIESEIDSEEELINK 15 Unmodified _EIESEIDSEEELINK_ 0 0 0 0 Q14566 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.727722167969 3 592.951033 1775.83127 36111.4981090508 1.5652 0.00092811 257650 152.78 257650 152.78 745.726391089501 86.564 0.6879 86.564 86.248 86.936 0 58 23 3 0.994977243314501 0.00399366654487602 0.0823837503916361 1.6323E-16 1 20191 245.55 221.72 1 28821000 13110 13856 15224 11764 13825 12677 16858 14936 11603 10398 12413 13077 15196 12221 14151 12714 16870 15208 11671 10136 1 1 1 1 1 1 1 1 1 1 1136 1011 995 1050 1253 1253 EIIDLVLDR 9 Unmodified _EIIDLVLDR_ 0 0 0 0 Q9BQE3;P68363;Q71U36 Q9BQE3;P68363 P68363 TUBA1C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.89599609375 2 543.313689 1084.61282 38606.2798598739 1.8793 0.001021 210890 114.58 210900 114.58 657.894814500369 100.63 0.1657 100.63 100.56 100.73 0 13 5 4 0.967301827003604 0.00255225697567992 0.0713109868655483 1.508E-05 1 23554 156.35 95.374 1 131160000 50366 69125 48937 68051 40247 48899 38907 49693 67566 16705 47654 65294 49250 69631 41364 49910 40453 50318 65452 16880 1 1 1 1 1 1 1 1 1 1 1137 789;1805 996 1051 1254 1254 EIPSATQSPISK 12 Phospho (STY) _EIPSATQS(ph)PISK_ EIPSATQS(1)PISK EIPS(-78.91)AT(-52.41)QS(44.69)PIS(-44.69)K 0 0 1 0 Q9BQG0 Q9BQG0 Q9BQG0 MYBBP1A Myb-binding protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.325927734375 3 446.549797 1336.62756 40090.6434690609 1.6799 0.00075016 342120 152.78 342130 152.78 599.325199509743 59.295 0.68939 59.295 58.988 59.678 -7.1054E-15 92 23 5 0.973980021477081 0.00723593254879361 0.164731197805077 1.8323E-07 1 13862 159.02 124.84 4 151190000 24744 21140 22056 17627 10747 24149 12479 18965 20034 2422.1 23404 19951 22228 18418 11606 23854 12827 19297 19447 2719.6 1 1 1 1 1 1 1 1 1 1 1138 1807 997 1052 1255 1255 3314 EIQNGNLHESDSESVPR 17 Phospho (STY) _EIQNGNLHES(ph)DSESVPR_ EIQNGNLHES(1)DSESVPR EIQNGNLHES(43.26)DS(-43.26)ES(-93.97)VPR 0 0 1 0 Q86UP2 Q86UP2 Q86UP2 KTN1 Kinectin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.676574707031 3 664.288252 1989.84293 36571.9105055991 1.5714 0.0010439 114990 76.388 114990 76.389 741.010789934456 43.353 0.49025 43.353 43.09 43.58 0 53 16 5 0.734961618375018 0.00257065858076173 0.0271779112269998 8.218E-17 1 9896 247.22 225.91 3 56967000 24252 23129 24117 24706 28133 23547 28840 25565 25139 19428 22948 21858 24342 25252 28319 23716 29221 26150 24962 18886 1 1 1 1 1 1 1 1 1 1 1139 1372 998 1053 1256 1256 2486 EISPGSGPGEIR 12 Phospho (STY) _EIS(ph)PGSGPGEIR_ EIS(0.689)PGS(0.311)GPGEIR EIS(3.45)PGS(-3.45)GPGEIR 0 0 1 0 O43491 O43491 O43491 EPB41L2 Band 4.1-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.873718261719 2 639.789924 1277.5653 35285.5183767434 1.633 0.0010448 179090 114.58 179090 114.58 754.371666610787 52.544 0.60353 52.544 52.238 52.842 0 63 20 4 0.993439671042469 0.00123947201907587 0.037378359019518 0.0092149 1 12199 84.999 56.487 2 53390000 17580 12477 18293 12525 15840 17961 13442 15913 14914 11102 16638 11787 18344 12945 16187 17756 13838 16375 14653 10822 1 1 1 1 1 1 1 1 1 1 1140 114 999 1054 1257 1257 195 EISSSPTSK 9 2 Phospho (STY) _EIS(ph)SS(ph)PTSK_ EIS(0.968)S(0.106)S(0.673)PT(0.228)S(0.026)K EIS(13.92)S(-9.38)S(4.64)PT(-4.64)S(-14.19)K 0 0 2 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.369079589844 2 548.203977 1094.3934 34609.0718424512 1.681 0.00092154 418030 229.16 418030 229.16 777.367336937197 40.845 1.5056 40.845 40.006 41.512 0 80 51 2 0.97147128783928 0.00087885802431912 0.0146688822077008 0.0037943 2 9438 100.04 65.364 10 18560000 40337 39183 38060 37515 28288 38320 26103 35309 41755 14970 38161 37005 38331 38634 29267 38364 27105 35985 40536 14914 2 2 2 2 2 2 2 2 2 2 1141 2226 1000 1055 1258;1259 1259 4040;4041;4042 EISSSPTSK 9 Phospho (STY) _EISS(ph)SPTSK_ EIS(0.015)S(0.62)S(0.336)PT(0.028)SK EIS(-16.03)S(2.66)S(-2.66)PT(-13.45)S(-40.33)K 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.384521484375 2 508.220812 1014.42707 36621.7101967821 2.4132 0.0012264 450910 229.16 450920 229.16 737.384025445181 41.721 0.74068 41.721 41.395 42.136 7.1054E-15 63 25 3 0.71028559004368 0.00287643772675758 0.072031043270525 4.9429E-06 1 9495 155.33 93.57 5 52159000 49200 57316 50958 59926 39460 49871 36430 49576 64624 9822.8 46562 54159 51064 61210 40707 50452 38000 50035 62569 10397 1 1 1 1 1 1 1 1 1 1 1142 2226 1000 1056 1260 1260 4040;4041;4042 EITALAPSTMK 11 Phospho (STY) _EITALAPS(ph)TMK_ EITALAPS(0.876)T(0.124)MK EIT(-50.51)ALAPS(8.48)T(-8.48)MK 0 0 1 0 P60709;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 567.30859375 3 414.53309 1240.57744 41065.3461043226 1.9653 0.00081466 368550 152.78 368550 152.78 567.308192999234 78.078 0.50891 78.078 77.809 78.318 0 31 17 2 0.988256398200127 0.00172553832948961 0.0275685461508262 0.0085439 1 18310 74.769 50.387 3 13972000 6720.3 4722.4 5357.2 4271.9 7391.2 6695.6 9207.3 8667.7 5401.7 6613.1 6354 4458.5 5501.1 4452.7 7402.6 6640.3 9180.8 8817.1 5491.2 6427.6 1 1 1 1 1 1 1 1 1 1 1143 742;783;766 1001 1057 1261 1261 1228 EITENLMATGDLDQDGR 17 Unmodified _EITENLMATGDLDQDGR_ 0 0 0 0 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.344604492188 3 626.623033 1876.84727 35058.6227216596 1.6654 0.0010436 121900 76.387 121900 76.388 703.343747121546 75.472 0.57416 75.472 75.286 75.86 0 68 19 5 0.821942105866725 0.0118619442061574 0.395997525170802 2.8335E-07 1 17713 153.75 135.73 1 37141000 12985 11253 10990 12617 14350 12713 12220 10629 12848 10983 12279 10638 11218 12873 14335 12733 12558 11074 12650 10588 1 1 1 1 1 1 1 1 1 1 1144 380 1002 1058 1262 1262 EITENLMATGDLDQDGR 17 Unmodified _EITENLMATGDLDQDGR_ 0 0 0 0 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.02416992188 2 939.430912 1876.84727 29211.9923624012 1.5895 0.0014932 121970 114.58 121970 114.58 1054.51480309908 75.492 0.4593 75.492 75.286 75.746 0 38 15 4 0.940310258884955 0.00155197901778673 0.130646217078401 1.8941E-30 1 17726 364.92 323.84 1 17784000 12899 5883 13265 5987.8 7497.1 13340 7957.1 10868 6288 23414 12207 5558 13266 6259.8 7953.6 13056 8031.9 11703 6275.2 22298 1 1 1 1 1 1 1 1 1 1 1145 380 1002 1058 1263 1263 EIVLADVIDNDSWR 14 Unmodified _EIVLADVIDNDSWR_ 0 0 0 0 P22234 P22234 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.668518066406 3 548.945777 1643.8155 39685.0691670848 1.5535 0.00085278 139150 76.388 139150 76.389 625.667696972661 100.04 0.11058 100.04 99.975 100.09 0 5 3 2 0.973611019362914 0.000202894496172983 0.00933577169288418 0.014881 1 23336 64.675 43.374 1 38493000 4884 6361.4 5098.6 4472.2 5497.2 3629.3 4125.3 6289.2 4849.7 12918 4622.3 5998.6 5124 4693.7 5536.3 3733.2 4284.9 6594.7 4754.5 12310 1 1 1 1 1 1 1 1 1 1 1146 456 1003 1059 1264 1264 EKDECTPTR 9 Phospho (STY) _EKDECT(ph)PTR_ EKDECT(0.999)PT(0.001)R EKDECT(31.01)PT(-31.01)R 0 0 1 1 O15042 O15042 O15042 U2SURP U2 snRNP-associated SURP motif-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 558.604248046875 3 405.828566 1214.46387 41040.7259428181 1.0236 0.0004154 376450 152.78 376450 152.78 558.603902111258 26.832 0.44193 26.832 26.679 27.12 0 47 14 4 0.889053535010901 0.00961407526092178 0.10666176492301 0.0038328 1 5976 97.716 81.617 2 50093000 23296 29495 25339 28778 18278 26473 15465 26021 28550 5510.4 22052 27859 25306 29555 18938 26643 16236 26284 27616 5790.9 1 1 1 1 1 1 1 1 1 1 1147 77 1004 1060 1265 1265 4322 EKDECTPTRK 10 Phospho (STY) _EKDECT(ph)PTRK_ EKDECT(0.93)PT(0.07)RK EKDECT(11.24)PT(-11.24)RK 0 0 1 2 O15042 O15042 O15042 U2SURP U2 snRNP-associated SURP motif-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 508.770050048828 4 336.646984 1342.55883 44007.7445144387 1.2824 0.00043171 510540 171.87 510540 171.87 508.519291999316 29.574 0.94422 29.574 29.28 30.224 0 98 31 6 0.980930864633544 0.00533791753443565 0.0447513266738172 0.011325 1 6564 72.898 51.066 2 212440000 27225 30156 26139 29884 26439 26262 26750 28651 31681 1920.4 25758 28485 26387 30642 26821 26519 27350 28705 31050 2471.4 1 1 1 1 1 1 1 1 1 1 1148 77 1005 1061 1266 1266 4322 EKDSPFKPK 9 Phospho (STY) _EKDS(ph)PFKPK_ EKDS(1)PFKPK EKDS(52.55)PFKPK 0 0 1 2 Q15291 Q15291 Q15291 RBBP5 Retinoblastoma-binding protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 518.805236816406 4 289.641599 1154.53729 44213.961909196 1.8992 0.00055008 791200 229.16 791200 229.16 518.804831235161 49.632 0.53048 49.632 49.481 50.012 -7.1054E-15 41 17 3 0.592312275383635 0.00153706745415439 0.0296888621237395 0.026236 1 11534 52.555 13.336 1 10405000 19209 17035 17363 16955 10666 18641 13061 15414 17886 2221.1 18170 16092 17512 17441 11257 18573 13312 15653 17444 2448.1 1 1 1 1 1 1 1 1 1 1 1149 1068 1006 1062 1267 1267 1845 EKEDDEEEEDEDASGGDQDQEER 23 Unmodified _EKEDDEEEEDEDASGGDQDQEER_ 0 0 0 1 O60216 O60216 O60216 RAD21 Double-strand-break repair protein rad21 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1048.44836425781 3 895.000896 2681.98086 30932.6238381869 1.7737 0.0015875 170700 152.78 170700 152.78 1048.11135591555 30.428 0.38675 30.428 30.194 30.581 3.5527E-15 36 12 4 0.954454490513188 0.00108515509684269 0.0264719673596592 2.9605E-08 1 6811 170.28 151.98 1 7943000 6035.9 3590.9 5202.8 4082.5 4191.9 5836.5 4130.8 4262.4 4659.4 160.35 5708.4 3395 5274.4 4190 4313.2 5752.5 4222.2 4341.3 4575 249.64 1 1 1 1 1 1 1 1 1 1 1150 134 1007 1063 1268 1268 EKEDDVPQFTSAGENFDK 18 Unmodified _EKEDDVPQFTSAGENFDK_ 0 0 0 1 P28838 P28838 P28838 LAP3 Cytosol aminopeptidase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 915.8095703125 3 685.976241 2054.90689 32645.7428464085 1.9836 0.0013607 334070 229.16 334070 229.17 915.474181224212 69.13 0.54886 69.13 68.825 69.374 0 59 18 5 0.985127979856724 0.00129800647527238 0.0184635076727676 0.00017242 1 16202 101.92 79.021 1 25136000 11018 11319 11808 12920 12260 13062 14392 13552 12820 16416 10429 10701 11854 13171 12443 13123 14504 14070 12716 15772 1 1 1 1 1 1 1 1 1 1 1151 497 1008 1064 1269 1269 EKEELMER 8 Unmodified _EKEELMER_ 0 0 0 1 P26038;P35241 P26038 P26038 MSN;RDX Moesin;Radixin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 507.950897216797 3 355.174463 1062.50156 43877.6695034131 1.2781 0.00045396 430140 152.78 430140 152.78 507.950254264665 44.051 0.49976 44.051 43.815 44.315 7.1054E-15 34 16 3 0.817674447191857 0.00137808935882425 0.0240305168896014 0.028862 1 10112 69.349 39.876 1 11371000 20801 13233 22720 14518 23367 21360 22284 18047 14555 2177.7 19691 12508 22773 14938 23652 21067 22523 18296 14689 2468.2 1 1 1 1 1 1 1 1 1 1 1152 478 1009 1065 1270 1270 EKEESPQPR 9 Phospho (STY) _EKEES(ph)PQPR_ EKEES(1)PQPR EKEES(79)PQPR 0 0 1 1 Q96C57 Q96C57 Q96C57 C12orf43 Uncharacterized protein C12orf43 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 546.615356445313 3 393.83957 1178.49688 42270.784061996 0.93993 0.00037018 387910 152.78 387910 152.78 546.61481271807 26.658 0.84534 26.658 26.275 27.12 0 76 28 4 0.903147849317222 0.00675728155689589 0.0547989614597428 0.0069865 1 5917 79.004 60.171 1 90620000 17825 13894 20593 14413 16502 19636 13574 17655 15071 4967.8 16877 13128 20521 14851 16948 19434 13998 17936 14807 5086.4 1 1 1 1 1 1 1 1 1 1 1153 1661 1010 1066 1271 1271 3058 EKEKEDDEEEEDEDASGGDQDQEER 25 Unmodified _EKEKEDDEEEEDEDASGGDQDQEER_ 0 0 0 2 O60216 O60216 O60216 RAD21 Double-strand-break repair protein rad21 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 907.910705566406 4 735.78688 2939.11842 32831.085773744 2.054 0.0015113 233590 171.87 233590 171.87 907.909037646467 32.714 0.2961 32.714 32.586 32.882 0 16 9 3 0.867947829565015 0.000405361197714534 0.0036636373028453 7.3539E-18 1 7331 228.42 216.96 1 10885000 3704 3003.2 3948.1 2325.1 2707.7 4268.9 2704.1 3591 3404.6 1219.9 3505.9 2833.2 3946.2 2460 2821.6 4186 2771.9 3665 3329.6 1231.8 1 1 1 1 1 1 1 1 1 1 1154 134 1011 1067 1272 1272 EKEPSRER 8 Phospho (STY) _EKEPS(ph)RER_ EKEPS(1)RER EKEPS(54.7)RER 0 0 1 2 Q8NI27 Q8NI27 Q8NI27 THOC2 THO complex subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.611633300781 3 370.83616 1109.48665 42594.2259648641 1.5519 0.00057551 411980 152.78 411980 152.78 523.611565203631 23.058 1.0687 23.058 22.747 23.816 0 95 36 5 0.988094591700688 0.0171499608941976 0.0699592643047952 0.039905 1 5160 54.7 23.269 1 49032000 7043.5 8869.4 6423.4 7888.3 7768.1 6134 7840.5 8153.8 8540.2 2177.9 6662.6 8373 6520.2 8131.2 7805.3 6256.1 7996.7 8166.2 8396.9 2239.5 1 1 1 1 1 1 1 1 1 1 1155 1530 1012 1068 1273 1273 2808 EKEVDGLLTSEPMGSPVSSK 20 Phospho (STY) _EKEVDGLLTSEPMGS(ph)PVSSK_ EKEVDGLLTSEPMGS(0.998)PVS(0.002)SK EKEVDGLLT(-72.41)S(-58.32)EPMGS(27.78)PVS(-27.78)S(-35.88)K 0 0 1 1 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 953.8408203125 3 724.004354 2168.99123 32032.2726614143 2.0741 0.0015016 316520 229.16 316520 229.16 953.501305715545 77.372 0.40724 77.372 77.168 77.575 -1.4211E-14 45 13 4 0.971544534589422 0.00283235045751739 0.0721211485454352 6.904E-06 1 18131 135.01 107.16 5 17954000 6403.9 9436.1 7061.7 9398 6645.1 7443.8 7257.7 8332.7 10493 21138 6062.2 8913.7 7069 9620.5 6779.8 7599.5 7446.9 8960.7 10216 20097 1 1 1 1 1 1 1 1 1 1 1156 1576 1013 1069 1274 1274 2892 EKFPEFCSSPSPPVEVK 17 Phospho (STY) _EKFPEFCSSPS(ph)PPVEVK_ EKFPEFCS(0.003)S(0.003)PS(0.995)PPVEVK EKFPEFCS(-25.69)S(-25.69)PS(25.69)PPVEVK 0 0 1 1 Q68E01 Q68E01 Q68E01 INTS3 Integrator complex subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.1083984375 4 511.733788 2042.90604 37742.9275775914 1.8134 0.000928 335860 171.87 335860 171.87 683.857251287463 80.454 0.65002 80.454 80.132 80.782 1.4211E-14 72 21 5 0.956306373071523 0.00196830301047373 0.0143983435950377 7.9E-05 1 18818 114.72 88.833 3 12911000 5801.8 5011.1 6625.5 5436.5 5623.7 5592.1 6252.7 6648.3 6157.3 8623.1 5493.1 4736.2 6613.1 5558.6 5774.9 5627.8 6331.9 6887.7 6079.5 8273.5 1 1 1 1 1 1 1 1 1 1 1157 1229 1014 1070 1275 1275 2168 EKGSPGQNDQELK 13 Phospho (STY) _EKGS(ph)PGQNDQELK_ EKGS(1)PGQNDQELK EKGS(59.59)PGQNDQELK 0 0 1 1 Q9H3H1 Q9H3H1 Q9H3H1 TRIT1 tRNA dimethylallyltransferase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.391540527344 3 503.890882 1508.65082 36806.164076025 2.2389 0.0011282 454790 229.16 454790 229.17 733.390988255497 42.612 0.40002 42.612 42.366 42.766 0 32 13 3 0.788724741605592 0.00157346264204113 0.0108316324306405 0.019245 1 9750 59.585 33.461 1 15519000 11926 27610 11379 27776 15544 12589 15927 18311 28752 5876.6 11283 26083 11541 28266 15546 13379 16545 18323 27826 5957.3 1 1 1 1 1 1 1 1 1 1 1158 1929 1015 1071 1276 1276 3501 EKKCFPK 7 Unmodified _EKKCFPK_ 0 0 0 2 Q9UI32 Q9UI32 Q9UI32 GLS2 Glutaminase liver isoform, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 464.041961669922 4 234.879745 935.489873 46838.5887927109 -0.64177 -0.00015074 975660 229.16 975660 229.16 464.292298164205 34.746 0.42482 34.746 34.55 34.975 7.1054E-15 33 14 4 0.795810840462233 0.00165507775357521 0.0244907781240209 0.052994 1 7805 19.636 3.4121 1 14133000 44523 12019 43157 13310 12190 39942 11657 25314 13839 4556.6 42125 11361 43155 14016 14193 38672 11951 26096 13562 4876.4 1 1 1 1 1 1 1 1 1 1 1159 2153 1016 1072 1277 1277 EKPHAGVSPR 10 Phospho (STY) _EKPHAGVS(ph)PR_ EKPHAGVS(1)PR EKPHAGVS(84.87)PR 0 0 1 1 Q5VWQ0 Q5VWQ0 Q5VWQ0 RSBN1 Round spermatid basic protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 539.296081542969 3 386.520284 1156.53902 42317.9608543087 1.2516 0.00048376 395260 152.78 395260 152.78 539.295940191176 29.591 0.43651 29.591 29.37 29.806 0 42 14 4 0.939098109313216 0.00727168692801363 0.0812307618132353 0.0052328 1 6591 84.874 39.737 1 60136000 23759 27351 22529 26182 19854 26055 14857 21737 29943 3274.7 22477 25831 22714 26952 20249 26074 15777 22070 28905 3586.6 1 1 1 1 1 1 1 1 1 1 1160 1212 1017 1073 1278 1278 2129 EKQEASESPVK 11 Phospho (STY) _EKQEASES(ph)PVK_ EKQEAS(0.001)ES(0.999)PVK EKQEAS(-28.24)ES(28.24)PVK 0 0 1 1 Q01167 Q01167 Q01167 FOXK2 Forkhead box protein K2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.030639648438 3 437.865785 1310.57553 38149.9954681936 1.5371 0.00067306 523360 229.16 523370 229.16 667.029644104247 36.902 0.55156 36.902 36.66 37.211 0 62 18 4 0.904047548989079 0.00390428645980532 0.0193805331338903 0.00011637 1 8322 113.8 78.5 2 40057000 34128 40584 36912 38908 28967 34052 32048 35969 45256 6696.7 32304 38328 36916 39974 29921 34386 32836 36207 44093 7138.2 1 1 1 1 1 1 1 1 1 1 1161 833 1018 1074 1279 1279 1344 EKSTFREESPLR 12 Phospho (STY) _EKSTFREES(ph)PLR_ EKSTFREES(1)PLR EKS(-42.53)T(-43.57)FREES(42.53)PLR 0 0 1 2 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.354919433594 3 520.246889 1557.71884 37611.3027548934 1.7265 0.00089821 293660 152.78 293660 152.78 673.022799509957 43.754 0.82174 43.754 43.522 44.344 0 97 27 5 0.957168426035404 0.00354660515994474 0.00799411130163706 0.014584 1 10002 74.141 48.551 3 151530000 37708 33035 37538 33727 36744 36203 35966 38484 31683 12286 35681 31211 37797 34627 37320 36230 36530 38884 31443 12459 1 1 1 1 1 1 1 1 1 1 1162 2072 1019 1075 1280 1280 3745 EKTPELPEPSVK 12 Phospho (STY) _EKT(ph)PELPEPSVK_ EKT(1)PELPEPSVK EKT(36.45)PELPEPS(-36.45)VK 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.050842285156 4 359.178546 1432.68508 42568.8571821594 1.5537 0.00055805 478510 171.87 478520 171.87 531.050638685974 62.846 0.91006 62.846 62.433 63.343 -7.1054E-15 103 30 4 0.821731411908084 0.00250611525108056 0.0368161566973179 0.00011022 1 14715 109.35 86.116 2 53037000 7807.5 9515.2 9057.1 9254 9419.4 8939.4 8816.7 10188 9769.6 1137.6 7392.6 8987.2 9051.5 9512.6 9529.8 8992.2 9029.7 10205 9599.2 1307 1 1 1 1 1 1 1 1 1 1 1163 1436 1020 1076 1281 1281 4659 EKTPELPEPSVK 12 Phospho (STY) _EKT(ph)PELPEPSVK_ EKT(1)PELPEPSVK EKT(57.05)PELPEPS(-57.05)VK 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 708.067810058594 3 478.568969 1432.68508 37394.5672403763 2.427 0.0011615 478850 229.16 478850 229.16 707.732340672297 62.862 2.8183 62.862 62.292 65.11 0 306 96 5 0.936227957308627 0.0068890988792895 0.05859734373425 0.00024069 2 14913 115.73 92.492 2 950110000 30906 35089 31888 36653 33053 34891 37228 35603 34305 14292 29248 33156 32075 37510 33530 35088 37614 36115 33973 14282 2 2 2 2 2 2 2 2 2 2 1164 1436 1020 1076 1282;1283 1282 4659 ELAEDGYSGVEVR 13 Unmodified _ELAEDGYSGVEVR_ 0 0 0 0 P23396 P23396 P23396 RPS3 40S ribosomal protein S3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 826.921752929688 2 712.33862 1422.66269 35197.9741516809 1.5116 0.0010768 160850 114.58 160850 114.58 826.920348095845 57.926 0.43573 57.926 57.675 58.111 0 31 14 3 0.958208507021359 0.00158269397904789 0.0187171744774832 6.5629E-10 1 13558 220.5 178.21 1 26108000 33091 38796 34825 36426 27838 35811 29474 35183 38897 14189 31319 36636 34884 37536 28694 35942 30181 35743 37980 14175 1 1 1 1 1 1 1 1 1 1 1165 464 1021 1077 1284 1284 ELAPEPWVERATPT 14 Phospho (STY) _ELAPEPWVERATPT(ph)_ ELAPEPWVERAT(0.388)PT(0.612) ELAPEPWVERAT(-1.98)PT(1.98) 0 0 1 1 Q9BTY7 Q9BTY7 Q9BTY7 HGH1 Protein HGH1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 953.473693847656 2 838.390003 1674.76545 32324.1553240959 1.6006 0.0013419 136670 114.58 136670 114.58 953.474180199888 78.669 0.51871 78.669 78.347 78.865 0 36 17 3 0.798427368523081 0.000987668267461156 0.0248207866096109 0.026187 1 18426 63.709 40.333 2 11524000 9069 8861 10202 9931 8677.8 10188 8187.8 10286 10068 28247 8585.9 8376.8 10188 10136 8891.1 10255 8409.5 11165 9854.6 26836 1 1 1 1 1 1 1 1 1 1 1166 1829 1022 1078 1285 1285 4755 ELASPVSPELR 11 Phospho (STY) _ELASPVS(ph)PELR_ ELAS(0.025)PVS(0.975)PELR ELAS(-15.89)PVS(15.89)PELR 0 0 1 0 Q5T4S7 Q5T4S7 Q5T4S7 UBR4 E3 ubiquitin-protein ligase UBR4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.394775390625 2 639.310493 1276.60643 36680.0978564129 1.7921 0.0011457 179230 114.58 179230 114.58 754.394144650805 67.362 0.67115 67.362 67.034 67.705 0 64 22 4 0.982101805252495 0.00133184789479216 0.098122533903411 0.032864 1 15819 58.313 36.918 2 13342000 12910 17529 13382 16600 13833 13606 15549 15883 17734 9952.4 12218 16554 13456 17053 14038 13819 15805 16143 17406 9739 1 1 1 1 1 1 1 1 1 1 1167 1184 1023 1079 1286 1286 2072 ELDALDANDELTPLGR 16 Unmodified _ELDALDANDELTPLGR_ 0 0 0 0 Q08211 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 986.016662597656 2 871.43378 1740.85301 32069.3691098667 1.5233 0.0013275 131490 114.58 131490 114.58 986.015062332671 84.419 0.53527 84.419 84.157 84.692 0 61 18 5 0.985042415032206 0.000908932162563794 0.0145532391440785 5.9749E-23 1 19692 327.15 282.75 1 43448000 10523 10707 11762 11953 12498 11965 12739 11881 10956 23551 9962.3 10122 11782 12197 12641 12036 12907 12630 10886 22451 1 1 1 1 1 1 1 1 1 1 1168 887 1024 1080 1287 1287 ELDPSLVSANDSPSGMQTR 19 Phospho (STY) _ELDPSLVSANDS(ph)PSGMQTR_ ELDPSLVSANDS(0.901)PS(0.098)GMQT(0.001)R ELDPS(-53.37)LVS(-34.21)ANDS(9.65)PS(-9.65)GMQT(-30.77)R 0 0 1 0 Q5UIP0 Q5UIP0 Q5UIP0 RIF1 Telomere-associated protein RIF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.025451660156 3 695.304914 2082.89291 35467.3703895707 1.7024 0.0011837 109860 76.388 109860 76.389 772.027515938742 69.941 0.51637 69.941 69.699 70.215 0 39 17 4 0.767198911392485 0.0014133035125499 0.0119514636857397 4.4383E-05 1 16425 114.9 92.887 5 11402000 8946.6 10181 10629 8989.9 12077 9540.4 13990 10201 10102 24942 8472.1 9610.9 10628 9312.1 12194 9593.5 14043 10958 10132 23722 1 1 1 1 1 1 1 1 1 1 1169 1197 1025 1081 1288 1288 2091 ELEDATETADAMNR 14 Unmodified _ELEDATETADAMNR_ 0 0 0 0 P35579 P35579 P35579 MYH9 Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 897.922485351563 2 783.341034 1564.66752 32803.2027885389 1.5579 0.0012203 146270 114.58 146270 114.58 897.922405819505 57.01 0.4065 57.01 56.813 57.22 -7.1054E-15 44 13 4 0.981339955107672 0.00187729230594322 0.0197539281319674 4.5262E-53 1 13322 386.98 318.14 1 35419000 33777 13262 30844 11084 31051 33299 33697 28522 14285 16234 31950 12515 31234 11871 31518 32357 33642 29284 14919 15946 1 1 1 1 1 1 1 1 1 1 1170 547 1026 1082 1289 1289 ELEQHIQTSDPENFQSEER 19 Phospho (STY) _ELEQHIQTS(ph)DPENFQSEER_ ELEQHIQT(0.084)S(0.916)DPENFQSEER ELEQHIQT(-10.39)S(10.39)DPENFQS(-54.02)EER 0 0 1 0 Q96K76 Q96K76 Q96K76 USP47 Ubiquitin carboxyl-terminal hydrolase 47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.060424804688 3 799.339452 2394.99653 33245.5135627541 1.2813 0.0010242 95562 76.386 95563 76.387 876.059693426864 55.113 0.34783 55.113 55.016 55.364 0 28 11 3 0.958694905649669 0.00100526085886051 0.00784865998916712 1.4832E-05 1 12881 130.81 117.22 3 15218000 7981.9 8856.5 7867.8 7958.1 7493.4 7346.3 8272.1 8561.9 8270.8 14345 7552.5 8361.3 7925.9 8216.1 7637.5 7433.1 8382.8 8973.3 8160.8 13706 1 1 1 1 1 1 1 1 1 1 1171 1706 1027 1083 1290 1290 3142 ELESQISELQEDLESER 17 Unmodified _ELESQISELQEDLESER_ 0 0 0 0 P35579 P35579 P35579 MYH9 Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.378356933594 3 678.655168 2032.94367 36094.6076794342 1.4954 0.0010148 112560 76.388 112560 76.389 755.376869840779 99.48 0.1127 99.48 99.409 99.522 0 15 3 5 0.989837573534381 0.0294334818160413 0.850665571203976 9.1335E-16 1 23121 216.29 198.79 1 171010000 10432 5194.2 10643 6386.9 10909 11031 11528 9015.8 5946.8 19189 9872.5 4913.6 10709 6559.7 11058 10860 11552 9699.8 6104.4 18278 1 1 1 1 1 1 1 1 1 1 1172 547 1028 1084 1291 1291 ELETVCNDVLSLLDK 15 Unmodified _ELETVCNDVLSLLDK_ 0 0 0 0 Q04917 Q04917 Q04917 YWHAH 14-3-3 protein eta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.075561523438 3 583.297599 1746.87097 36284.0158100782 1.7022 0.0009929 261920 152.78 261920 152.78 736.074410465131 101.97 0.11289 101.97 101.93 102.04 0 8 3 3 0.929363499557999 0.00274106801861378 0.0439888775635897 0.00011257 1 24019 116.35 88.378 1 43079000 7364 10344 9133.1 11036 8347.7 9498.1 9346.4 9236.6 11488 28976 6974.9 9775.7 9087.1 11265 8533.8 9640.4 9524.5 10148 11244 27498 1 1 1 1 1 1 1 1 1 1 1173 867 1029 1085 1292 1292 ELFDDPSYVNVQNLDK 16 Phospho (STY) _ELFDDPSY(ph)VNVQNLDK_ ELFDDPS(0.001)Y(0.999)VNVQNLDK ELFDDPS(-30.88)Y(30.88)VNVQNLDK 0 0 1 0 P29353 P29353 P29353 SHC1 SHC-transforming protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 812.071655273438 3 659.294344 1974.8612 35722.2188971766 1.9106 0.0012596 231720 152.77 231730 152.78 812.400370802319 90.803 0.43703 90.803 90.589 91.026 0 38 14 4 0.897124243409324 0.00113851158724797 0.03014113474687 9.4816E-08 1 21175 170.49 142.4 2 7183900 6572.6 10158 6109.3 9634.7 3559.9 5937.4 5239 9908.8 10645 17600 6217.6 9592.9 6150.3 9865.2 3792 6199.3 5400.3 10316 10274 16801 1 1 1 1 1 1 1 1 1 1 1174 498 1030 1086 1293 1293 4874 ELGGLEGDPSPEEDEGIQK 19 Unmodified _ELGGLEGDPSPEEDEGIQK_ 0 0 0 0 Q9BT09 Q9BT09 Q9BT09 CNPY3 Protein canopy homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.750610351563 3 666.97613 1997.90656 34799.3527666887 2.0719 0.0013819 229060 152.77 229060 152.78 819.750370618491 68.646 0.31464 68.646 68.417 68.732 0 33 10 4 0.917958505938126 0.00108290742753953 0.00868242242274385 1.24E-07 1 16108 156.17 133.26 1 11798000 9196.8 6693.8 9713.9 7081.1 10847 9920.3 11749 9440.7 7496.2 18724 8704.4 6325.6 9767.2 7292.6 10949 9846.1 11800 10052 7576.9 17849 1 1 1 1 1 1 1 1 1 1 1175 1819 1031 1087 1294 1294 ELGSECGIEFDEEK 14 Unmodified _ELGSECGIEFDEEK_ 0 0 0 0 P39656 P39656 P39656 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.678955078125 3 547.903137 1640.68758 36118.6902617605 1.8579 0.0010179 278840 152.77 278840 152.78 701.012859001372 71.637 0.52243 71.637 71.401 71.924 0 41 17 3 0.903164649451861 0.00272921239322629 0.0265636522675933 9.1708E-07 1 16815 141.54 98.98 1 17670000 11769 10183 10825 10791 11646 12184 12175 11385 11541 17197 11133 9622.9 10965 11065 11777 12173 12350 11969 11415 16457 1 1 1 1 1 1 1 1 1 1 1176 566 1032 1088 1295 1295 ELHPQLLSPTK 11 Phospho (STY) _ELHPQLLS(ph)PTK_ ELHPQLLS(0.998)PT(0.002)K ELHPQLLS(26.58)PT(-26.58)K 0 0 1 0 Q8TBN0 Q8TBN0 Q8TBN0 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 601.006652832031 3 448.230399 1341.66937 40831.0876549136 1.6055 0.00071963 340840 152.78 340840 152.78 601.005774153909 66.855 0.6658 66.855 66.544 67.21 0 75 22 5 0.957071476788467 0.00443171973422827 0.105421438403576 5.8033E-07 1 15673 150.34 128.78 2 44048000 4115.1 15910 4147 20391 3921.5 3826.5 3934.9 9098.1 19403 4098.2 3894.1 15055 4171.2 20398 4007.6 4648.6 4428.3 9045.2 18489 4069.5 1 1 1 1 1 1 1 1 1 1 1177 1538 1033 1089 1296 1296 2825 ELIEIISGAAALD 13 Unmodified _ELIEIISGAAALD_ 0 0 0 0 P36542 P36542 P36542 ATP5C1 ATP synthase subunit gamma, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.446105957031 2 657.8612 1313.70785 36179.873133177 1.7506 0.0011517 174170 114.58 174180 114.58 772.443728591121 103.19 0.11251 103.19 103.12 103.23 0 9 3 3 0.916842046417545 0.00481844128330071 0.130650524180659 5.5235E-05 1 24326 136.57 113.74 1 28393000 3725.5 4484.1 3192.7 4082.6 4061.9 4054.9 4101 4666.6 5421.9 18817 3523.2 4233.6 3256.3 4216 4072.5 4108.8 4208.7 5224.2 5293.8 17826 1 1 1 1 1 1 1 1 1 1 1178 555 1034 1090 1297 1297 ELIPQESPR 9 Phospho (STY) _ELIPQES(ph)PR_ ELIPQES(1)PR ELIPQES(128.08)PR 0 0 1 0 Q96DF8 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.351928710938 2 574.771003 1147.52745 37670.4363521678 1.3739 0.00078966 199350 114.58 199350 114.58 689.352334279727 58.068 1.3103 58.068 57.506 58.817 0 77 44 3 0.981285350229835 0.00161203342083205 0.0190350473198329 0.00020122 1 13559 128.08 93.326 1 38583000 18375 25188 18088 24281 15891 19398 17566 19544 24417 8671.1 17387 23789 18207 24908 16286 19680 17988 19860 23801 8617.2 1 1 1 1 1 1 1 1 1 1 1179 1667 1035 1091 1298 1298 3069 ELISNASDALDK 12 Unmodified _ELISNASDALDK_ 0 0 0 0 P14625;P08238 P14625;P08238 P08238 HSP90B1;HSP90AB1 Endoplasmin;Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.989440917969 2 638.324982 1274.63541 33005.1739789008 1.9021 0.0012142 359000 229.16 359000 229.16 867.487753527672 73.34 0.5157 73.34 73.069 73.585 0 59 17 4 0.953769568535781 0.00269182118594417 0.0644789614942173 0.00038134 1 17211 121.29 79.178 1 43231000 38328 55709 38200 51015 40669 39963 42140 49327 55160 37974 36267 52600 38506 52489 41158 40739 43181 50260 53874 36898 1 1 1 1 1 1 1 1 1 1 1180 331;389 1036 1092 1299 1299 ELISNSSDALDK 12 Unmodified _ELISNSSDALDK_ 0 0 0 0 P07900;Q14568 P07900 P07900 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.480407714844 2 646.322439 1290.63033 34746.7432055809 1.2457 0.00080514 354560 229.16 354570 229.16 875.484744754148 65.712 0.41323 65.712 65.483 65.897 0 33 13 3 0.492788193485207 0.00178397293593361 0.0539610424781345 0.00070435 1 15428 106.47 65.277 1 13705000 28506 37952 28516 33765 28955 28382 27083 34322 42941 16856 26974 35828 28716 34838 29346 28795 28092 34705 41697 16666 1 1 1 1 1 1 1 1 1 1 1181 323 1037 1093 1300 1300 ELKEQLGEEIDSK 13 Unmodified _ELKEQLGEEIDSK_ 0 0 0 1 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.7587890625 3 506.594632 1516.76207 37054.0465588122 2.5121 0.0012726 452360 229.16 452360 229.16 735.757746731576 73.709 0.51118 73.709 73.501 74.012 0 46 17 4 0.859809386365503 0.00124318463656649 0.0250944163575113 0.00027757 1 17320 114.59 81.382 1 12272000 19219 16277 20073 17979 8739.9 19580 10236 15308 17329 12737 18189 15386 20027 18382 9566.2 19525 10542 15905 16798 12348 1 1 1 1 1 1 1 1 1 1 1182 2012 1038 1094 1301 1301 ELKTDSSPNQAR 12 Phospho (STY) _ELKTDSS(ph)PNQAR_ ELKT(0.001)DS(0.289)S(0.71)PNQAR ELKT(-30.13)DS(-3.9)S(3.9)PNQAR 0 0 1 1 P26599 P26599 P26599 PTBP1 Polypyrimidine tract-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.660095214844 3 475.883839 1424.62969 39380.2114178178 1.9265 0.0009168 321030 152.78 321040 152.78 628.65913342255 36.284 1.3617 36.284 35.85 37.211 -7.1054E-15 144 46 5 0.926406371725121 0.00527583854057786 0.0406291672403134 3.5818E-05 1 8141 129.88 109.14 3 213630000 28652 33923 29998 34809 30630 27574 31724 29754 36148 3798.6 27117 32051 30139 35570 31066 27996 32361 29875 35480 4265.4 1 1 1 1 1 1 1 1 1 1 1183 483 1039 1095 1302 1302 798 ELPPLSPSLSR 11 Phospho (STY) _ELPPLS(ph)PSLSR_ ELPPLS(0.968)PS(0.031)LSR ELPPLS(14.9)PS(-14.9)LS(-35.64)R 0 0 1 0 Q86UU1 Q86UU1 Q86UU1 PHLDB1 Pleckstrin homology-like domain family B member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.404541015625 2 638.32086 1274.62717 36308.247902068 1.4866 0.00094893 179510 114.58 179510 114.58 752.903007763083 75.781 1.1303 75.781 75.314 76.444 0 101 38 3 0.973287647726445 0.001263093144307 0.0719566921253719 0.019325 1 17746 65.179 38.795 3 17150000 9201.9 13433 10596 15733 11061 9010.8 8495.9 11864 14303 14495 8712.6 12702 10591 15906 11167 9395.1 8930.3 12226 13867 13923 1 1 1 1 1 1 1 1 1 1 1184 1374 1040 1096 1303 1303 2488 ELPSLSPAPDTGLSPSKR 18 Phospho (STY) _ELPSLSPAPDTGLS(ph)PSKR_ ELPSLSPAPDT(0.331)GLS(0.623)PS(0.046)KR ELPS(-62.49)LS(-34.93)PAPDT(-2.75)GLS(2.75)PS(-11.28)KR 0 0 1 1 Q9UBF8 Q9UBF8 Q9UBF8 PI4KB Phosphatidylinositol 4-kinase beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.766174316406 3 644.653984 1930.94012 35648.4948746035 1.9272 0.0012424 236990 152.78 236990 152.78 797.765485310354 73.223 0.48655 73.223 72.927 73.414 0 45 16 4 0.97350487178896 0.00144147822703399 0.0259340093531917 9.6428E-06 1 17179 134.34 106.18 5 13534000 12616 9670.9 13959 10925 10562 14177 12710 10832 10294 14149 11943 9142.9 13941 11194 10947 14050 12768 11422 10260 13574 1 1 1 1 1 1 1 1 1 1 1185 2120 1041 1097 1304 1304 3818 ELPTVTTNVQNSQDK 15 Phospho (STY) _ELPTVTTNVQNS(ph)QDK_ ELPTVTTNVQNS(1)QDK ELPT(-84.63)VT(-77.77)T(-71.2)NVQNS(71.2)QDK 0 0 1 0 Q96B01 Q96B01 Q96B01 RAD51AP1 RAD51-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.052062988281 3 585.271651 1752.79312 36638.732108876 2.3744 0.0013897 261040 152.78 261040 152.78 738.049110350944 63.832 0.37069 63.832 63.606 63.977 0 20 12 2 0.771071130390739 0.000670292131805929 0.0114511446263664 6.1817E-05 1 15005 124.98 103.73 4 11574000 10026 7592.8 8272.1 7978.4 10353 8783.5 10211 8616.3 8437.7 6073.9 9480.4 7174.8 8455.5 8181.4 10380 8777.6 10352 8832.3 8400.7 5918.7 1 1 1 1 1 1 1 1 1 1 1186 1651 1042 1098 1305 1305 3045 ELQEMDKDDESLIK 14 Unmodified _ELQEMDKDDESLIK_ 0 0 0 1 P52566 P52566 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.436218261719 3 564.93807 1691.79238 35234.6681813749 2.5223 0.0014249 405640 229.16 405640 229.16 794.100294404332 72.13 0.79793 72.13 71.895 72.693 0 74 26 5 0.842175501865344 0.0040796976433538 0.0329808089675499 0.0003753 1 16909 109.04 73.692 1 32096000 31560 5241.2 32324 5399.4 29862 30989 36524 25792 7513.9 19166 29867 4952.1 32487 5945.4 30516 29890 36064 26650 8644.4 18644 1 1 1 1 1 1 1 1 1 1 1187 692 1043 1099 1306 1306 ELSESVQQQSTPVPLISPK 19 Phospho (STY) _ELSESVQQQSTPVPLIS(ph)PK_ ELSESVQQQSTPVPLIS(1)PK ELS(-111.67)ES(-101.2)VQQQS(-56.48)T(-41.67)PVPLIS(41.67)PK 0 0 1 0 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.471801757813 3 716.359237 2146.05588 34005.2999932695 1.6315 0.0011687 213270 152.78 213270 152.78 869.469594863733 81.29 0.57256 81.29 81.021 81.593 1.4211E-14 79 19 5 0.987167046351965 0.00396017127253639 0.0760876868005154 1.3314E-07 1 18996 152.07 117.8 5 59225000 6869.3 9930.1 7169.3 9153.5 8250.1 6335.7 8794.6 9263.3 10818 16815 6501.3 9376.2 7216.1 9400.6 8318 6544.7 8981.4 9685 10588 16048 1 1 1 1 1 1 1 1 1 1 1188 2190 1044 1100 1307 1307 3962 ELSESVQQQSTPVPLISPKR 20 Phospho (STY) _ELSESVQQQSTPVPLIS(ph)PKR_ ELSESVQQQSTPVPLIS(1)PKR ELS(-166.11)ES(-139.65)VQQQS(-49.3)T(-50.93)PVPLIS(49.3)PKR 0 0 1 1 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.503601074219 3 768.39294 2302.15699 32770.0895336527 1.9891 0.0015284 198820 152.78 198830 152.78 921.502359433287 72.597 0.52704 72.597 72.311 72.838 0 72 17 5 0.990647639326184 0.00475415387473216 0.0812005018544323 4.6841E-16 1 17024 215.36 201.49 5 47723000 10781 18303 12239 16927 15333 12472 14584 16629 19868 29219 10207 17282 12277 17392 15372 12807 15026 17400 19379 27898 1 1 1 1 1 1 1 1 1 1 1189 2190 1045 1101 1308 1308 3962 ELSGTIK 7 Phospho (STY) _ELS(ph)GTIK_ ELS(0.908)GT(0.092)IK ELS(9.93)GT(-9.93)IK 0 0 1 0 P30050 P30050 P30050 RPL12 60S ribosomal protein L12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.363586425781 2 414.199151 826.38375 36908.1899873943 2.5118 0.0010404 553270 229.16 553270 229.16 643.362530490009 58.44 0.46659 58.44 58.231 58.698 0 36 15 3 0.836073467766447 0.00243776120126501 0.135572060864992 0.0028355 1 13692 100.57 9.8599 2 22226000 31892 29194 34209 26235 22084 29269 22577 27862 30390 17847 30187 27561 34165 27166 23141 29219 23172 28540 29655 17449 1 1 1 1 1 1 1 1 1 1 1190 508 1046 1102 1309 1309 835 ELSLKASPLR 10 Phospho (STY) _ELSLKAS(ph)PLR_ ELSLKAS(1)PLR ELS(-35.2)LKAS(35.2)PLR 0 0 1 1 Q86W50 Q86W50 Q86W50 METTL16 Methyltransferase-like protein 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.323852539063 3 398.547839 1192.62169 41641.5090050086 1.6496 0.00065745 383330 152.78 383330 152.78 551.323185101777 67.478 0.67456 67.478 67.119 67.794 0 72 22 5 0.984071134062073 0.0100746006236331 0.33502740715432 0.0019231 1 15817 95.854 52.557 2 49812000 17447 16636 18871 16155 11075 17241 10267 15275 18186 2252.8 16515 15713 18823 16635 11695 17213 10707 15466 17609 2474.7 1 1 1 1 1 1 1 1 1 1 1191 1384 1047 1103 1310 1310 2510 ELSNSPLR 8 Phospho (STY) _ELSNS(ph)PLR_ ELS(0.001)NS(0.999)PLR ELS(-31.66)NS(31.66)PLR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 612.813232421875 2 498.231514 994.448475 39861.0483571737 0.44107 0.00021975 229980 114.58 229980 114.58 612.813096397605 47.488 0.7691 47.488 47.207 47.976 0 96 30 4 0.959350499035554 0.00840745537962633 0.0418826072165674 0.00040051 1 10980 129.82 81.121 2 514060000 149230 105690 159580 111010 53264 147280 66095 103290 124200 7309.3 141250 99876 158820 114240 60566 145470 68254 105530 120090 9273.1 1 1 1 1 1 1 1 1 1 1 1192 2226 1048 1104 1311 1311 4043 ELSNSPLRENSFGSPLEFR 19 Phospho (STY) _ELSNS(ph)PLRENSFGSPLEFR_ ELSNS(1)PLRENSFGSPLEFR ELS(-36.85)NS(36.85)PLRENS(-99.24)FGS(-141.04)PLEFR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.404174804688 3 753.686235 2258.03688 34240.1656454631 1.5035 0.0011332 101350 76.388 101350 76.389 830.408319751597 85.676 1.7551 85.676 85.243 86.998 0 196 60 7 0.99142639658907 0.00727015762132378 0.0294099104707825 2.2087E-23 1 19943 280.08 243.78 4 599260000 12808 9054.9 14081 9705.6 8621.8 13530 8598.8 11735 10548 16012 12124 8557.6 14039 9987.1 9073.3 13399 8807.3 12323 10325 15349 1 1 1 1 1 1 1 1 1 1 1193 2226 1049 1105 1312 1312 4043;4044 ELSPAALEK 9 Phospho (STY) _ELS(ph)PAALEK_ ELS(1)PAALEK ELS(107.79)PAALEK 0 0 1 0 O75683 O75683 O75683 SURF6 Surfeit locus protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.413330078125 2 519.249373 1036.48419 36191.8751487739 2.1855 0.0011348 441330 229.16 441340 229.16 748.41211240429 70.885 0.98468 70.885 70.476 71.461 0 108 33 4 0.641281634870814 0.00187733143655908 0.0225077364577697 0.0005692 1 16577 107.79 44.164 1 172530000 26924 45483 28444 40797 15839 25986 15087 31367 42798 11991 25483 42940 28398 41937 16833 26798 16153 31616 41053 12017 1 1 1 1 1 1 1 1 1 1 1194 199 1050 1106 1313 1313 349 ELSPAGSISK 10 Phospho (STY) _ELS(ph)PAGSISK_ ELS(1)PAGSISK ELS(36.68)PAGS(-36.68)IS(-55.44)K 0 0 1 0 O95453 O95453 O95453 PARN Poly(A)-specific ribonuclease PARN MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.916259765625 2 534.752279 1067.49001 35635.5269117204 2.3285 0.0012452 428540 229.16 428540 229.16 763.915066406064 59.317 0.5503 59.317 58.988 59.539 7.1054E-15 50 18 3 0.993418119783165 0.00426767909839431 0.16365637624719 3.0177E-14 1 13861 224.03 135 3 159120000 45209 48472 43999 42463 39967 39526 41484 38528 48131 10893 42775 45756 44328 43919 40825 39758 42336 39014 47209 11149 1 1 1 1 1 1 1 1 1 1 1195 249 1051 1107 1314 1314 420 ELSPEAR 7 Phospho (STY) _ELS(ph)PEAR_ ELS(1)PEAR ELS(71.43)PEAR 0 0 1 0 Q9P0B6 Q9P0B6 Q9P0B6 CCDC167 Coiled-coil domain-containing protein 167 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 555.773193359375 2 441.191858 880.369162 42908.5576134826 1.1232 0.00049554 259710 114.58 259710 114.58 555.772642880157 36.626 0.57897 36.626 36.316 36.895 0 44 19 3 0.63614136095456 0.0018573144450677 0.0222095722781459 0.019815 1 8248 71.425 24.228 1 30615000 35912 27928 38353 29993 29576 35107 33960 36755 27583 4848 33991 26395 38380 30752 30588 34991 34184 36950 27487 5415.6 1 1 1 1 1 1 1 1 1 1 1196 2090 1052 1108 1315 1315 3780 ELSPQHK 7 Phospho (STY) _ELS(ph)PQHK_ ELS(1)PQHK ELS(92.73)PQHK 0 0 1 0 Q86V48 Q86V48 Q86V48 LUZP1 Leucine zipper protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 459.583404541016 3 306.807542 917.400797 45137.6114595983 0.66494 0.00020401 497950 152.78 497950 152.78 459.583282586231 36.317 0.54148 36.317 36.056 36.598 0 56 18 4 0.984192781621759 0.0068772675828463 0.117699739808033 0.0044285 1 8175 92.732 38.575 1 50985000 36913 34009 37281 35331 36913 36598 41220 38022 37897 3307.5 34930 32135 37522 36216 37539 36651 41661 38183 37534 3994.3 1 1 1 1 1 1 1 1 1 1 1197 1376 1053 1109 1316 1316 2491 ELSPQHKR 8 Phospho (STY) _ELS(ph)PQHKR_ ELS(1)PQHKR ELS(75.74)PQHKR 0 0 1 1 Q86V48 Q86V48 Q86V48 LUZP1 Leucine zipper protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 511.617156982422 3 358.841246 1073.50191 43626.3200976153 1.2324 0.00044223 425750 152.78 425750 152.78 511.616376083184 29.662 0.49382 29.662 29.401 29.895 3.5527E-15 57 16 5 0.862948024686516 0.00316975291792759 0.0304528172127125 0.010854 1 6592 75.739 50.353 1 56899000 20191 19679 19097 17442 21897 19028 21194 19132 18653 3061.5 19101 18577 19326 18071 22044 19009 21538 19279 18513 3325.5 1 1 1 1 1 1 1 1 1 1 1198 1376 1054 1110 1317 1317 2491 ELSSNEEERLAR 12 Phospho (STY) _ELS(ph)SNEEERLAR_ ELS(0.5)S(0.5)NEEERLAR ELS(0)S(0)NEEERLAR 0 0 1 1 REV__Q9HA90 REV__Q9HA90 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 436.212371826172 4 378.922705 1511.66172 46924.5932145504 0.21826 8.2704E-05 151190 57.289 151190 57.289 436.212045012585 50.097 0.55999 50.097 49.804 50.364 7.1054E-15 61 18 4 0.991094115198311 0.00308840735986579 0.0319494612234573 0.050729 1 11613 43.813 8.9615 2 36363000 8385.7 7298.1 8049.8 7306.5 11984 8379.8 12237 9669.4 7742.4 323.28 7933.8 6894.3 8173.6 7518.8 11929 8368.4 12321 9658.9 7830.1 528.19 1 1 1 1 1 1 1 1 1 1 + 1199 2349 1055 1111 1318 1318 4306;4307 ELSSPISPK 9 Phospho (STY) _ELSSPIS(ph)PK_ ELSSPIS(1)PK ELS(-74.88)S(-52.15)PIS(52.15)PK 0 0 1 0 P78559 P78559 P78559 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 499.277557373047 3 346.502007 1036.48419 45112.9191252542 0.73448 0.0002545 440910 152.78 440910 152.78 499.277101860677 64.165 0.64401 64.165 63.92 64.564 0 53 21 4 0.959292675995042 0.00234940690932446 0.037091169891716 0.0002857 1 15061 112.84 35.17 3 18078000 4832.9 16041 4628.7 15837 5251.4 5205.9 5048.4 8344.2 16232 1128.7 4572.4 15152 4679.8 16103 5300 5734.1 5454.9 8282.2 15542 1255.9 1 1 1 1 1 1 1 1 1 1 1200 806 1056 1112 1319 1319 1287 ELSTSPCNPIVR 12 Phospho (STY) _ELST(ph)SPCNPIVR_ ELS(0.02)T(0.749)S(0.232)PCNPIVR ELS(-15.82)T(5.09)S(-5.09)PCNPIVR 0 0 1 0 Q9H2Y7 Q9H2Y7 Q9H2Y7 ZNF106 Zinc finger protein 106 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 841.914978027344 2 726.831266 1451.64798 34223.8331422048 1.4069 0.0010226 157650 114.58 157650 114.58 841.413171057738 62.246 0.51674 62.246 62.007 62.523 -7.1054E-15 45 17 3 0.988637636114182 0.00163504247434479 0.0740938853021928 0.00025695 1 14595 108.53 78.359 3 39163000 17786 17859 19113 18542 13579 18307 9922.3 13861 15695 29243 16835 16875 19095 18992 14060 18360 10434 14957 15241 27857 1 1 1 1 1 1 1 1 1 1 1201 1925 1057 1113 1320 1320 4763 ELTPASPTCTNSVSK 15 Phospho (STY) _ELTPAS(ph)PTCTNSVSK_ ELT(0.038)PAS(0.767)PT(0.195)CTNSVSK ELT(-13)PAS(5.96)PT(-5.96)CT(-53.23)NS(-82.87)VS(-104.96)K 0 0 1 0 P28715 P28715 P28715 ERCC5 DNA repair protein complementing XP-G cells MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 711.0244140625 3 557.914699 1670.72227 36933.3048173886 1.1829 0.00065995 273830 152.77 273830 152.78 710.690031194941 54.656 0.53765 54.656 54.387 54.924 0 70 18 5 0.831791665486586 0.00580141009363316 0.0149737069112476 4.8512E-05 1 12746 127.97 110.05 6 67349000 44126 36113 47417 37546 24796 45073 28032 39205 38711 9919.7 41767 34123 47286 38585 26554 44788 28671 39851 37743 10248 1 1 1 1 1 1 1 1 1 1 1202 495 1058 1114 1321 1321 820 EMAEDDDDSFP 11 Unmodified _EMAEDDDDSFP_ 0 0 0 0 O43242 O43242 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.305847167969 2 635.72444 1269.43433 36503.4763680973 1.9984 0.0012704 180240 114.58 180240 114.58 750.305280170246 68.048 2.5687 68.048 66.978 69.546 0 136 87 2 0.965700232767943 0.000696343962539344 0.0364765630269157 0.00013254 2 15857 133.6 118.63 1 9586600 18668 21160 18877 22449 19389 18336 21479 22539 22994 41370 17666 19996 19006 22905 19677 18694 21805 23692 22624 39477 2 2 2 2 2 2 2 2 2 2 1203 102 1059 1115 1322;1323 1322 EMEAELEDER 10 Unmodified _EMEAELEDER_ 0 0 0 0 P35579 P35579 P35579 MYH9 Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.345886230469 2 625.7639 1249.51325 35646.5460021293 1.9405 0.0012143 183110 114.58 183110 114.58 740.345255578028 52.386 0.45265 52.386 52.155 52.607 -7.1054E-15 48 15 5 0.979829987480421 0.000903164941203534 0.0269054082717015 1.9474E-09 1 12169 202.97 146.79 1 35382000 29829 14431 28548 15412 28595 30460 28223 25132 15250 10526 28221 13638 28820 16007 28998 29813 28391 25733 15598 10494 1 1 1 1 1 1 1 1 1 1 1204 547 1060 1116 1324 1324 EMEENFAVEAANYQDTIGR 19 Unmodified _EMEENFAVEAANYQDTIGR_ 0 0 0 0 P08670 P08670 P08670 VIM Vimentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1209.07189941406 2 1093.98658 2185.95861 27889.2726643648 1.7045 0.0018647 104740 114.58 104740 114.58 1209.06921367646 83.761 0.31351 83.761 83.643 83.956 1.4211E-14 23 10 3 0.959562784500631 0.000808663563336232 0.0186815090918347 3.5994E-11 1 19586 209.66 189.9 1 8732200 5307.8 4345.8 4707.7 4170.4 6014.3 4915 5787.8 5613.3 4103.5 16765 5020.3 4104.3 4790.5 4304.7 6021.4 4933.7 5856.2 6108.6 4120.3 15916 1 1 1 1 1 1 1 1 1 1 1205 336 1061 1117 1325 1325 EMEENFAVEAANYQDTIGR 19 Oxidation (M) _EM(ox)EENFAVEAANYQDTIGR_ EM(1)EENFAVEAANYQDTIGR EM(139.98)EENFAVEAANYQDTIGR 0 1 0 0 P08670 P08670 P08670 VIM Vimentin MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.382141113281 3 734.991785 2201.95353 NaN NaN NaN NaN NaN NaN NaN NaN 74.596 1 74.596 74.096 75.096 0 NaN NaN NaN 3.0371E-08 1 17516 139.98 120.31 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1206 336 1061 1118 1326 1326 38 EMEHNTVCAAGTSPVGEIGEEK 22 Phospho (STY) _EMEHNTVCAAGTS(ph)PVGEIGEEK_ EMEHNTVCAAGT(0.087)S(0.913)PVGEIGEEK EMEHNT(-80.86)VCAAGT(-10.2)S(10.2)PVGEIGEEK 0 0 1 0 P18583 P18583 P18583 SON Protein SON MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 962.117309570313 3 809.006428 2423.99746 32167.8456638659 1.5234 0.0012324 188840 152.77 188840 152.78 962.115728132157 59.905 0.42965 59.905 59.678 60.107 0 41 14 4 0.985780488363845 0.00179187132983779 0.0182071678094855 6.0999E-08 1 14037 147.22 129.17 3 14931000 4818 6797.8 5416.5 5352.7 4151.2 6584.6 10850 11147 6553.1 27153 4561.3 6413.4 5416.9 5604 4378 6653.5 10605 11823 6648.2 25826 1 1 1 1 1 1 1 1 1 1 1207 428 1062 1119 1327 1327 689 EMFEDTVEER 10 Unmodified _EMFEDTVEER_ 0 0 0 0 Q16576 Q16576 Q16576 RBBP7 Histone-binding protein RBBP7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.355651855469 2 642.774267 1283.53398 36065.3435450587 1.8308 0.0011768 178260 114.58 178260 114.58 757.355124772197 61.838 0.47119 61.838 61.594 62.065 -7.1054E-15 38 15 3 0.991008566977669 0.00122407967599744 0.0242187079348977 1.0413E-05 1 14517 145.9 103.62 1 16846000 22974 30625 20693 30149 16807 23012 16928 24125 31357 17932 21731 28928 20921 30871 17301 23433 17621 24696 30328 17443 1 1 1 1 1 1 1 1 1 1 1208 1108 1063 1120 1328 1328 EMLWGSSTQLASDGSPK 17 Oxidation (M),Phospho (STY) _EM(ox)LWGSSTQLASDGS(ph)PK_ EM(1)LWGSSTQLASDGSPK EMLWGSSTQLASDGS(1)PK EM(164.94)LWGSSTQLASDGSPK EMLWGS(-80.44)S(-71.67)T(-62.61)QLAS(-38.03)DGS(38.03)PK 0 1 1 0 Q5JSL3 Q5JSL3 Q5JSL3 DOCK11 Dedicator of cytokinesis protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.382629394531 3 630.604413 1888.79141 35550.6654973101 1.8615 0.0011739 242270 152.78 242270 152.78 783.380357299724 74.735 0.6403 74.735 74.449 75.09 -1.4211E-14 60 21 4 0.952816388682418 0.0034757939760165 0.0851152997973799 1.3115E-07 1 17542 164.94 140.05 5 16519000 5666.1 8791.7 7068.2 7467.8 7032.9 6553.8 8196.9 8131 8378.8 18090 5366.8 8297.7 7038.4 7733.8 7155.7 6663.9 8292.8 8639.9 8259.6 17222 1 1 1 1 1 1 1 1 1 1 1209 1168 1064 1121 1329 1329 155 2023 EMLWGSSTQLASDGSPK 17 Phospho (STY) _EMLWGSSTQLASDGS(ph)PK_ EMLWGSSTQLAS(0.001)DGS(0.999)PK EMLWGS(-80.2)S(-72.04)T(-63.6)QLAS(-29.68)DGS(29.68)PK 0 0 1 0 Q5JSL3 Q5JSL3 Q5JSL3 DOCK11 Dedicator of cytokinesis protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.049621582031 3 625.272775 1872.79649 35376.7403195342 1.5995 0.0010001 244330 152.78 244340 152.78 778.383727651905 84.798 0.86303 84.798 84.524 85.387 1.4211E-14 108 29 5 0.94274314630481 0.00571011192142564 0.110709624909866 1.4045E-07 2 19801 163.62 145.55 5 27039000 13905 18717 13714 19752 19293 15427 20675 20528 20993 27278 13157 17687 13891 20148 19269 15771 20988 21215 20700 26160 2 2 2 2 2 2 2 2 2 2 1210 1168 1064 1122 1330;1331 1331 2023 EMPQDLRSPAR 11 Phospho (STY) _EMPQDLRS(ph)PAR_ EMPQDLRS(1)PAR EMPQDLRS(132.04)PAR 0 0 1 1 O43765 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 804.89404296875 2 690.310501 1378.60645 35157.5611288598 1.8529 0.001279 165990 114.58 165990 114.58 804.892382570671 44.598 0.95331 44.598 43.994 44.948 7.1054E-15 84 32 4 0.975581547138443 0.00144237004737984 0.0365444943445143 4.8424E-05 1 10207 132.04 101.68 1 53636000 21323 23528 19605 23715 18525 21819 18844 19717 24497 9558.5 20171 22227 19828 24308 18873 21946 19321 20147 23931 9456.8 1 1 1 1 1 1 1 1 1 1 1211 127 1065 1123 1332 1332 220 ENAEVDGDDDAEEMEAK 17 Unmodified _ENAEVDGDDDAEEMEAK_ 0 0 0 0 P05198 P05198 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.686645507813 3 622.910909 1865.7109 35653.6605730407 0.78954 0.00049182 245260 152.77 245260 152.78 775.685547323408 51.856 0.46695 51.856 51.66 52.127 0 50 15 5 0.813894083795165 0.00200427882756895 0.00561387349664083 1.0248E-10 1 12049 185.33 166.91 1 49662000 18592 21147 17464 21912 19507 16609 18692 20928 23824 77051 17588 19982 17673 22367 19669 17084 19207 23147 23290 73037 1 1 1 1 1 1 1 1 1 1 1212 300 1066 1124 1333 1333 ENARSPSSVTGNALWK 16 Phospho (STY) _ENARS(ph)PSSVTGNALWK_ ENARS(0.635)PS(0.365)SVTGNALWK ENARS(2.41)PS(-2.41)S(-31.34)VT(-46.64)GNALWK 0 0 1 1 Q9NYB0 Q9NYB0 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.726867675781 3 599.615752 1795.82543 36395.375999378 1.9732 0.0011832 254790 152.78 254790 152.78 752.725281161417 67.121 0.66782 67.121 66.807 67.475 0 86 22 5 0.951419577694255 0.00433804183578987 0.0584049785228717 2.3405E-07 1 15728 161.51 135.04 4 55734000 11003 14034 12838 13669 14079 12566 13213 15026 16266 9681.9 10418 13255 12836 14040 14205 12694 13575 15269 15920 9464.4 1 1 1 1 1 1 1 1 1 1 1213 2070 1067 1125 1334 1334 3740 ENASPAPGTTAEEAMSR 17 Phospho (STY) _ENAS(ph)PAPGTTAEEAMSR_ ENAS(1)PAPGTTAEEAMSR ENAS(56.6)PAPGT(-56.6)T(-56.6)AEEAMS(-103.33)R 0 0 1 0 P46379 P46379 P46379 BAG6 Large proline-rich protein BAG6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1014.45141601563 2 899.869305 1797.72406 30658.9422664902 0.54215 0.00048786 127330 114.58 127330 114.58 1014.45129696356 47.54 0.45011 47.54 47.412 47.862 7.1054E-15 26 15 2 0.957874970786414 0.000786063235510772 0.00819867070220495 1.106E-22 1 11012 269.63 248.9 4 29559000 11197 14419 10113 13516 8100.6 10058 7745.1 9899.7 13706 2909.3 10591 13616 10220 13877 8340 10240 8064.1 10024 13271 2968.6 1 1 1 1 1 1 1 1 1 1 1214 609 1068 1126 1335 1335 1006 ENDIKPLTSFR 11 Phospho (STY) _ENDIKPLTS(ph)FR_ ENDIKPLT(0.315)S(0.685)FR ENDIKPLT(-3.38)S(3.38)FR 0 0 1 1 Q14739 Q14739 Q14739 LBR Lamin-B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.335144042969 3 467.225425 1398.65445 39839.6339378764 1.8559 0.00086711 326980 152.77 326980 152.78 620.334364688456 68.575 0.66869 68.575 68.272 68.941 0 67 22 5 0.892011456117069 0.00593034207296353 0.0650231626922378 0.02138 1 16072 56.872 43.519 2 36871000 8669.9 16487 9591.8 18277 10006 9624.4 10878 14081 18638 3116.6 8207.4 15585 9612.1 18518 10149 10095 11244 14045 18061 3260.6 1 1 1 1 1 1 1 1 1 1 1215 1026 1069 1127 1336 1336 1753 ENENSSPVAGAFGVFSTISTAVQSTGK 27 Phospho (STY) _ENENSS(ph)PVAGAFGVFSTISTAVQSTGK_ ENENS(0.258)S(0.742)PVAGAFGVFSTISTAVQSTGK ENENS(-4.59)S(4.59)PVAGAFGVFS(-113.59)T(-119.76)IS(-124.86)T(-130.77)AVQS(-162.06)T(-164.26)GK 0 0 1 0 Q9NRY5 Q9NRY5 Q9NRY5 FAM114A2 Protein FAM114A2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1075.87145996094 3 922.427038 2764.25928 30491.5624169642 1.4146 0.0013048 165620 152.78 165630 152.78 1075.53779238872 102.18 0.1754 102.18 102.1 102.28 0 21 5 6 0.870597790754157 0.00384725990072947 0.0463177989325929 9.5973E-12 1 24073 180.38 168.97 8 37043000 10095 14424 12473 13807 6720.7 11581 4622.4 12498 16319 66700 9560.9 13623 12348 14179 7141.2 11845 5126.3 14511 15606 63095 1 1 1 1 1 1 1 1 1 1 1216 2020 1070 1128 1337 1337 3671 ENFSPER 7 Phospho (STY) _ENFS(ph)PER_ ENFS(1)PER ENFS(108.1)PER 0 0 1 0 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.268859863281 2 479.686939 957.359326 40877.7149081209 1.2512 0.00060019 238870 114.58 238870 114.58 594.26839195988 40.072 0.76099 40.072 39.688 40.449 0 71 25 4 0.987393975717497 0.00194398842877659 0.032120341436627 0.0019593 1 9065 108.1 19.156 1 88825000 21807 23319 21081 21194 19661 21892 20662 24716 23211 4177.6 20632 22017 21254 21902 20053 21956 21054 24809 22794 4505.8 1 1 1 1 1 1 1 1 1 1 1217 1353 1071 1129 1338 1338 2451 ENIKPNETSPSFSK 14 Phospho (STY) _ENIKPNETS(ph)PSFSK_ ENIKPNET(0.104)S(0.886)PS(0.01)FSK ENIKPNET(-9.32)S(9.32)PS(-19.38)FS(-44.78)K 0 0 1 1 Q99700 Q99700 Q99700 ATXN2 Ataxin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.751525878906 3 553.25382 1656.73963 35842.7511372485 1.7 0.00094052 414210 229.16 414210 229.16 782.416036422748 57.073 0.69317 57.073 56.813 57.506 0 73 23 5 0.937319603258751 0.00458119271841358 0.0222703828747325 0.00010995 1 13334 116.65 96.266 4 40481000 33222 43783 34542 48504 26553 35329 29075 36737 53387 22702 31442 41387 34613 49303 27477 36061 30140 37479 51645 22227 1 1 1 1 1 1 1 1 1 1 1218 1784 1072 1130 1339 1339 3289 ENKGEER 7 Unmodified _ENKGEER_ 0 0 0 1 P52789 P52789 P52789 HK2 Hexokinase-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1319.72827148438 1 861.406086 860.398809 27873.8813559987 1.7637 0.0015192 532070 458.32 532070 458.33 1319.73007376688 86.016 1.6646 86.016 85.068 86.732 0 86 57 2 0.485638739414903 0.00238624062367674 0.0724963886129104 0.04024 2 20032 39.542 2.5217 1 15002000 2412.3 3314.7 3109.8 3384.5 3415.8 2955.8 3116.8 6775 3906.1 160100 2285.2 3131.7 3094.5 3464 3444.9 3331.3 3208.6 11472 3820.7 150910 2 2 2 2 2 2 2 2 2 2 1219 697 1073 1131 1340;1341 1341 ENPPVEDSSDEDDKR 15 Phospho (STY) _ENPPVEDS(ph)SDEDDKR_ ENPPVEDS(0.751)S(0.249)DEDDKR ENPPVEDS(4.8)S(-4.8)DEDDKR 0 0 1 1 Q8TCJ2 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.345886230469 3 604.570425 1810.68945 37055.6798155971 1.2376 0.00074821 252700 152.78 252700 152.78 757.346169132861 36.002 0.61105 36.002 35.534 36.145 0 32 20 2 NaN 0 0 2.4417E-07 1 8056 166.27 149.9 2 8347300 11861 8026.1 11626 9217.9 9337.6 11098 10099 9661.6 9219.6 5397.5 11222 7588.8 11694 9422.1 9620.9 11032 10219 9909.6 9134.2 5306 1 1 1 1 1 1 1 1 1 1 1220 1543 1074 1132 1342 1342 2833 ENPSEEAQNLVEFTDEEGYGR 21 Unmodified _ENPSEEAQNLVEFTDEEGYGR_ 0 0 0 0 Q12874 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.741638183594 3 805.019057 2412.03534 33297.2891892447 1.5317 0.001233 94888 76.387 94890 76.388 881.740851455738 85.411 0.68758 85.411 85.098 85.786 0 94 23 5 0.971717054044366 0.00295656758503586 0.0424814740296221 2.4423E-23 1 19906 270 243.26 1 28045000 2732.3 2927.4 3140.2 4149.8 3495.2 2528.1 4088.7 3326.5 3685.1 15545 2587 2772.4 3144 4160.2 3534 2645.7 4122.4 3774.1 3653.2 14714 1 1 1 1 1 1 1 1 1 1 1221 910 1075 1133 1343 1343 ENQPENSQTPTKK 13 Phospho (STY) _ENQPENSQT(ph)PTKK_ ENQPENSQT(0.993)PT(0.007)KK ENQPENS(-42.12)QT(21.39)PT(-21.39)KK 0 0 1 1 Q12834 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.067199707031 3 527.56992 1579.68793 36180.4873513631 2.1659 0.0011426 434370 229.16 434380 229.16 756.732118708974 32.6 0.46788 32.6 32.384 32.852 0 45 15 4 0.988641018815324 0.00307305933165368 0.0294562506215715 4.6471E-10 1 7281 178.51 149.96 3 34669000 31016 19808 33995 19392 10822 34442 10685 23355 22021 2903.5 29360 18710 33776 20178 12360 33718 11193 23944 21247 3274.5 1 1 1 1 1 1 1 1 1 1 1222 905 1076 1134 1344 1344 4518 ENQRSPVR 8 Phospho (STY) _ENQRS(ph)PVR_ ENQRS(1)PVR ENQRS(83.86)PVR 0 0 1 1 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.827270507813 2 533.245487 1064.47642 39367.9479311781 2.2023 0.0011744 214870 114.58 214880 114.58 647.826485420836 21.148 0.34457 21.148 21.026 21.371 0 24 11 3 0.980706894716462 0.00260001584421647 0.0104676816229898 0.01012 1 4789 83.862 51.542 1 3201700 1712.6 2603.5 1677.5 2039.4 1655.9 1430.4 2343.9 1941.5 2576.2 1701.3 1620.5 2456.2 1692.2 2118.6 1691.7 1470.5 2359.3 1978.9 2532.1 1647 1 1 1 1 1 1 1 1 1 1 1223 952 1077 1135 1345 1345 1586 ENSFGSPLEFR 11 Phospho (STY) _ENSFGS(ph)PLEFR_ ENS(0.001)FGS(0.999)PLEFR ENS(-32.61)FGS(32.61)PLEFR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.373229980469 2 681.789924 1361.5653 34914.8055534863 1.9349 0.0013192 168060 114.58 168060 114.58 796.371538987875 78.796 1.2144 78.796 78.49 79.704 0 99 41 3 0.95490681167316 0.00248909322530419 0.0606819538749909 7.6268E-05 1 18437 129.15 98.256 2 56117000 22218 20087 22614 21969 15377 22624 14062 18770 23432 16799 21026 18987 22657 22453 16022 22631 14633 19483 22723 16253 1 1 1 1 1 1 1 1 1 1 1224 2226 1078 1136 1346 1346 4044 ENSKETFSGK 10 Phospho (STY) _ENS(ph)KETFSGK_ ENS(1)KETFSGK ENS(37.43)KET(-37.43)FS(-71.06)GK 0 0 1 1 Q5VZL5 Q5VZL5 Q5VZL5 ZMYM4 Zinc finger MYM-type protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 632.338317871094 3 402.839459 1205.49655 39677.5345910269 1.8775 0.00075635 568870 229.16 568870 229.16 632.002942654416 46.61 0.68657 46.61 46.436 47.122 0 68 23 4 0.916621230331189 0.00587078808576689 0.0735912624205697 0.00022372 1 10775 107.35 78.372 3 41817000 54306 33624 49867 35213 42180 47504 41629 45046 37667 12285 51371 31773 50373 36256 43247 47060 42293 45649 37334 12611 1 1 1 1 1 1 1 1 1 1 1225 1216 1079 1137 1347 1347 2141 ENSSPENKNWLLAMAAK 17 Phospho (STY) _ENSS(ph)PENKNWLLAMAAK_ ENS(0.137)S(0.863)PENKNWLLAMAAK ENS(-8.01)S(8.01)PENKNWLLAMAAK 0 0 1 1 Q9NZJ0 Q9NZJ0 Q9NZJ0 DTL Denticleless protein homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.801635742188 3 661.639569 1981.89688 33694.6442699532 2.0535 0.0013587 346360 229.16 346360 229.16 891.137444346706 96.944 0.42994 96.944 96.667 97.097 0 31 14 3 1 0.000429186606999511 0.00696273888827948 8.1205E-08 1 22509 168.78 139.65 2 8457300 7561.8 7080.4 7395.7 6931.7 4496.5 6300.2 4954.2 5923.5 6685.4 19413 7154.8 6687.8 7422 7116.2 4742.4 6375.1 5068.4 6541.2 6523 18417 1 1 1 1 1 1 1 1 1 1 1226 2082 1080 1138 1348 1348 3773 ENTLFDIHRSPAR 13 Phospho (STY) _ENTLFDIHRS(ph)PAR_ ENTLFDIHRS(1)PAR ENT(-46.25)LFDIHRS(46.25)PAR 0 0 1 1 Q9ULI0 Q9ULI0 Q9ULI0 ATAD2B ATPase family AAA domain-containing protein 2B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.312561035156 3 545.926149 1634.75662 39810.2287480054 1.4315 0.00078148 139920 76.388 139930 76.389 622.313438120485 57.415 0.86233 57.415 57.072 57.935 0 90 29 5 0.976140497903935 0.00299450542024148 0.0420411333127442 0.0046557 1 13393 88.106 65.099 2 41970000 12229 9775.9 10748 10850 7871.6 10656 8909.6 10371 12568 6540.1 11567 9241 10875 11072 8176.1 10699 9119.6 10611 12246 6398.3 1 1 1 1 1 1 1 1 1 1 1227 2184 1081 1139 1349 1349 3950 EPAITSQNSPEAR 13 Phospho (STY) _EPAITSQNS(ph)PEAR_ EPAITSQNS(1)PEAR EPAIT(-70.2)S(-62.22)QNS(62.22)PEAR 0 0 1 0 P23193 P23193 P23193 TCEA1 Transcription elongation factor A protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.911743164063 2 740.327402 1478.64025 34035.3889436302 1.816 0.0013444 154770 114.58 154770 114.58 854.90912230822 39.112 0.72616 39.112 38.754 39.48 0 84 24 4 0.996350928089356 0.00245581784970773 0.110450672200426 6.4932E-16 1 8821 232.2 196.53 3 66214000 18013 16029 18019 15885 18347 18765 18618 18222 17764 5422.6 17045 15141 18149 16365 18602 18684 18915 18462 17564 5527.7 1 1 1 1 1 1 1 1 1 1 1228 463 1082 1140 1350 1350 759 EPALPLEPDSGGNTSPGVTANGEAR 25 Phospho (STY) _EPALPLEPDSGGNTS(ph)PGVTANGEAR_ EPALPLEPDSGGNT(0.043)S(0.957)PGVTANGEAR EPALPLEPDS(-62.36)GGNT(-13.51)S(13.51)PGVT(-37.87)ANGEAR 0 0 1 0 Q92974 Q92974 Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 916.106506347656 3 839.38154 2515.12279 32584.2477061676 1.7479 0.0014671 91005 76.388 91006 76.389 916.103760597699 71.727 0.99633 71.727 71.229 72.225 0 169 33 7 0.897453573316149 0.00425472564134918 0.163060256375079 6.3505E-08 2 16751 159.1 139.37 4 176920000 12987 11206 13429 11597 11554 13610 10165 13320 12050 59409 12290 10588 13471 11916 11818 13661 10465 15162 11809 56249 2 2 2 2 2 2 2 2 2 2 1229 1636 1083 1141 1351;1352 1351 3022 EPDATPPSPR 10 Phospho (STY) _EPDATPPS(ph)PR_ EPDATPPS(1)PR EPDAT(-62.54)PPS(62.54)PR 0 0 1 0 P28715 P28715 P28715 ERCC5 DNA repair protein complementing XP-G cells MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.327026367188 2 573.744986 1145.47542 38377.4629571686 0.9786 0.00056147 199710 114.58 199710 114.58 688.32635137167 34.567 0.69341 34.567 34.282 34.975 0 43 23 2 0.771194603536047 0.00099237329245378 0.00877557568600663 3.8667E-06 1 7775 140.14 102.59 2 20250000 19140 14638 18111 16822 13426 19461 16500 16979 17113 6974 18108 13841 18244 17182 13945 19371 16665 17338 16860 6959.8 1 1 1 1 1 1 1 1 1 1 1230 495 1084 1142 1353 1353 821 EPEAASSRGSPVR 13 Phospho (STY) _EPEAASSRGS(ph)PVR_ EPEAASSRGS(1)PVR EPEAAS(-73.28)S(-44.2)RGS(44.2)PVR 0 0 1 1 Q53GS9 Q53GS9 Q53GS9 USP39 U4/U6.U5 tri-snRNP-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.271606445313 3 474.88395 1421.63002 41648.3569064714 0.85784 0.00040738 160860 76.388 160860 76.388 551.271881875124 26.839 0.55914 26.839 26.623 27.182 -3.5527E-15 65 18 5 0.985459352463837 0.00935599854772995 0.0502210415035804 9.4611E-11 1 5960 188.66 151.65 3 84995000 8179.5 10747 8342 8998.6 8143.7 7381.5 8962 9544.7 9957.1 0 7740.5 10143 8389.7 9320.2 8288.5 7498.2 9110.5 9490.2 9782.4 0 1 1 1 1 1 1 1 1 1 0 1231 1150 1085 1143 1354 1354 1999 EPESPPASAPIPLFGADTIGQR 22 Phospho (STY) _EPES(ph)PPASAPIPLFGADTIGQR_ EPES(1)PPASAPIPLFGADTIGQR EPES(45.21)PPAS(-45.21)APIPLFGADT(-106.07)IGQR 0 0 1 0 Q96AY4 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.097229003906 3 777.373657 2329.09914 36259.1936217672 1.8039 0.0014023 98265 76.389 98267 76.39 853.762212936095 98.459 0.52412 98.459 98.079 98.603 0 36 17 3 0.938814163406638 0.00204790924367413 0.0469120797738305 5.3806E-05 1 22813 109.71 87.059 3 8345600 3572.1 3678.7 4197.2 3016.8 3372.5 3602.5 3769 3866.4 3523.9 17382 3382.5 3471.3 4181 3147.3 3476.5 3620.9 3810.8 4391.8 3487.5 16457 1 1 1 1 1 1 1 1 1 1 1232 1650 1086 1144 1355 1355 3044 EPLIPASPK 9 Phospho (STY) _EPLIPAS(ph)PK_ EPLIPAS(1)PK EPLIPAS(59.57)PK 0 0 1 0 Q9Y613 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.927856445313 2 516.262283 1030.51001 36273.7014245465 2.0335 0.0010498 443890 229.16 443890 229.16 745.425616229611 68.735 0.90531 68.735 68.329 69.234 0 59 30 2 0.952436422927877 0.00129635140674033 0.0187297141187187 0.028704 1 16101 59.57 38.668 1 34019000 11228 19074 11428 18089 16702 12320 17093 16148 19815 11581 10625 18013 11561 18540 16646 12676 17455 16398 19436 11279 1 1 1 1 1 1 1 1 1 1 1233 2305 1087 1145 1356 1356 4248 EPLIPASPKAEPIWELPTR 19 Phospho (STY) _EPLIPAS(ph)PKAEPIWELPTR_ EPLIPAS(1)PKAEPIWELPTR EPLIPAS(52)PKAEPIWELPT(-52)R 0 0 1 1 Q9Y613 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.829772949219 3 742.051967 2223.13407 33068.7625493642 1.9047 0.0014134 205880 152.78 205890 152.78 895.164318224739 98.683 0.40426 98.683 98.459 98.863 0 31 13 3 0.980633210078629 0.00200204138152293 0.045578494188991 0.0047496 2 22883 88.571 72.265 2 14232000 9393 18040 11071 18001 13745 10506 13807 12977 17683 53826 8894.5 17041 11084 18365 13795 10998 14157 14543 17283 50984 2 2 2 2 2 2 2 2 2 2 1234 2305 1088 1146 1357;1358 1358 4248 EPPTIRPNSPYDLCSR 16 Phospho (STY) _EPPTIRPNS(ph)PYDLCSR_ EPPT(0.002)IRPNS(0.996)PY(0.001)DLCS(0.002)R EPPT(-28.16)IRPNS(27.55)PY(-31.19)DLCS(-27.55)R 0 0 1 1 Q96RU2 Q96RU2 Q96RU2 USP28 Ubiquitin carboxyl-terminal hydrolase 28 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.021789550781 3 661.299435 1980.87648 36076.0386034459 1.7108 0.0011314 115510 76.387 115510 76.388 738.02086167988 59.171 0.92144 59.171 58.786 59.707 0 92 31 4 0.983559134026787 0.00293547334014561 0.048361798039471 0.0031274 1 13864 93.006 76.067 4 17551000 8402.6 11021 8659 9644.4 16106 9107.3 16802 13221 10394 6546.4 7952 10403 8796.9 9978 15909 9216.6 16894 13299 10528 6470.2 1 1 1 1 1 1 1 1 1 1 1235 1740 1089 1147 1359 1359 3194 EPRSPRK 7 Phospho (STY) _EPRS(ph)PRK_ EPRS(1)PRK EPRS(54.54)PRK 0 0 1 2 Q5T5C0 Q5T5C0 Q5T5C0 STXBP5 Syntaxin-binding protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 469.935485839844 3 317.158686 948.454229 46830.0539250227 0.47266 0.00014991 481700 152.78 481700 152.78 469.93556763152 24.842 0.37737 24.842 24.656 25.034 0 28 12 3 0.887115707141275 0.00184361656074988 0.019118337941885 0.041639 1 5550 54.539 12.349 1 4488500 5964.1 6609.6 5559.7 8585.2 12390 4845.2 10642 8287.3 8625.1 4026.1 5642 6255.1 5701.9 8634.4 12143 5074.2 10861 8300.7 8596 3982.8 1 1 1 1 1 1 1 1 1 1 1236 1185 1090 1148 1360 1360 2074 EPSEVPTPK 9 Phospho (STY) _EPSEVPT(ph)PK_ EPSEVPT(1)PK EPS(-37.85)EVPT(37.85)PK 0 0 1 0 P17096 P17096 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 507.936248779297 3 355.161762 1062.46346 43990.8437060014 0.13583 4.824E-05 430160 152.78 430160 152.78 507.936952322997 47.508 0.80045 47.508 47.237 48.038 0 81 31 4 0.931477245217801 0.000436737671350632 0.0010957539161444 0.012612 1 10962 75.819 57.508 2 51320000 8049.4 9118.2 7759.3 10413 7781.8 8679 6734.9 7675.3 10139 3035 7615.7 8621 7828.2 10585 7884.1 8769.9 6999 7829.3 9859.5 3035.4 1 1 1 1 1 1 1 1 1 1 1237 415 1091 1149 1361 1361 4409 EPSPALGPNLDGSGLLPR 18 Phospho (STY) _EPS(ph)PALGPNLDGSGLLPR_ EPS(1)PALGPNLDGSGLLPR EPS(108.79)PALGPNLDGS(-108.79)GLLPR 0 0 1 0 Q9BRZ2 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.365356445313 3 623.975057 1868.90334 38664.7581949165 1.4361 0.00089608 122420 76.388 122420 76.389 700.364336667336 88.433 0.85828 88.433 87.877 88.735 0 71 29 4 0.708607739633716 0.000820271198302417 0.0145657921311105 7.3427E-06 1 20656 134.87 112.83 2 9634100 4290.3 5064.6 2955.9 4465.4 3798.8 3292.1 4541.6 4624.8 5697.4 13770 4054.7 4781 3064.9 4602.7 3816.9 3394.9 4619 5002.2 5572.6 13073 1 1 1 1 1 1 1 1 1 1 1238 1815 1092 1150 1362 1362 3330 EPSPEKNSK 9 Phospho (STY) _EPS(ph)PEKNSK_ EPS(1)PEKNSK EPS(54.61)PEKNS(-54.61)K 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.990539550781 3 365.828783 1094.46452 41106.7552633205 0.87534 0.00032023 626420 229.16 626420 229.16 594.991743694758 34.338 0.49929 34.338 34.134 34.633 0 38 16 3 0.958339704426786 0.000505429732425469 0.0045859908207651 0.0066014 1 7675 80.312 61.069 2 31414000 17368 14325 18729 16610 20946 17831 20582 17639 16807 2455.7 16439 13545 18808 16935 21117 17821 20865 17774 16744 2720.6 1 1 1 1 1 1 1 1 1 1 1239 1436 1093 1151 1363 1363 2626 EPSPKQDVVGK 11 Phospho (STY) _EPS(ph)PKQDVVGK_ EPS(1)PKQDVVGK EPS(66.44)PKQDVVGK 0 0 1 1 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.034790039063 3 421.870871 1262.59078 39251.0545902036 2.2873 0.00096496 543210 229.16 543210 229.16 651.034060794583 51.006 0.49173 51.006 50.791 51.283 0 43 16 3 0.833863896931553 0.00139464998639273 0.00652662907037892 0.011044 1 11871 66.436 41.643 1 13651000 12948 13171 12455 16042 17458 12712 16435 15087 14484 5553.8 12250 12459 12629 16242 17405 12930 16726 15209 14374 5578.7 1 1 1 1 1 1 1 1 1 1 1240 2190 1094 1152 1364 1364 3963 EPTPSIASDISLPIATQELR 20 Phospho (STY) _EPTPSIASDIS(ph)LPIATQELR_ EPTPSIASDIS(1)LPIATQELR EPT(-77.53)PS(-71.64)IAS(-47.04)DIS(47.04)LPIAT(-53.96)QELR 0 0 1 0 A0FGR8 A0FGR8 A0FGR8 ESYT2 Extended synaptotagmin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 816.759887695313 3 740.038274 2217.09299 36718.2797091392 1.6837 0.001246 103220 76.387 103220 76.388 816.758740474588 98.998 0.28792 98.998 98.835 99.123 0 20 9 3 0.80938786066111 0.00130479707929227 0.0565316807468411 4.0897E-05 1 22985 116.74 97.664 5 9081000 7511.4 9332.3 7004.1 10429 7120.5 7776.1 7613 10902 10874 23591 7105.8 8822.2 7084.3 10599 7229.1 7996.4 7815.1 11526 10591 22466 1 1 1 1 1 1 1 1 1 1 1241 1 1095 1153 1365 1365 1 EPVAESPK 8 Phospho (STY) _EPVAES(ph)PK_ EPVAES(1)PK EPVAES(80.98)PK 0 0 1 0 Q96PV6 Q96PV6 Q96PV6 LENG8 Leukocyte receptor cluster member 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.582702636719 3 312.807319 935.400128 47289.3514206774 0.06425 2.0098E-05 488400 152.78 488400 152.78 465.582759121738 40.954 0.59527 40.954 40.744 41.339 0 42 20 3 0.773173776482456 0.0013467764487262 0.0177307261675234 0.0076485 1 9342 80.979 15.479 1 12097000 14200 16013 15405 15157 13706 14378 14484 15033 17620 2879.9 13441 15122 15423 15602 14023 14461 14792 15140 17253 3059.7 1 1 1 1 1 1 1 1 1 1 1242 1726 1096 1154 1366 1366 3174 EQDRVHSPCPTSGSEK 16 Phospho (STY) _EQDRVHS(ph)PCPTSGSEK_ EQDRVHS(1)PCPTSGSEK EQDRVHS(41.28)PCPT(-41.28)S(-43.8)GS(-74.82)EK 0 0 1 1 Q96LT9 Q96LT9 Q96LT9 RNPC3 RNA-binding protein 40 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.041625976563 3 631.931411 1892.7724 35562.7492300915 1.8592 0.0011749 241760 152.78 241760 152.78 785.041008000739 28.832 0.49671 28.832 28.609 29.106 3.5527E-15 47 16 5 0.940445741246242 0.00497375114381932 0.0348575501809706 1.7577E-07 1 6408 165.13 130.69 4 29972000 13595 16444 15209 16399 14100 15566 17136 17740 19065 2596.2 12871 15534 15214 16827 14419 15672 17350 17789 18729 2855.2 1 1 1 1 1 1 1 1 1 1 1243 1711 1097 1155 1367 1367 3155 EQEVTELKK 9 Unmodified _EQEVTELKK_ 0 0 0 1 Q7Z406 Q7Z406 Q7Z406 MYH14 Myosin-14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 896.047302246094 2 552.300778 1102.587 33690.026228899 2.591 0.001431 622390 343.75 622390 343.75 896.04682613793 50.965 0.81368 50.965 50.761 51.575 0 42 27 2 0.344631757878024 0.000307949481731183 0.00327974696468338 0.056277 1 11867 20.902 6.7444 1 9264600 7067.8 8197.7 6924.6 10137 7470 7146.8 7265.8 8880.3 10889 10231 6687.4 7755.1 6987.2 10242 7548.9 7338.1 7504.9 9148.7 10590 9839.3 1 1 1 1 1 1 1 1 1 1 1244 1334 1098 1156 1368 1368 EQFLDGDGWTSR 12 Unmodified _EQFLDGDGWTSR_ 0 0 0 0 P27797 P27797 P27797 CALR Calreticulin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 820.399108886719 2 705.817855 1409.62116 34292.6897618024 2.1279 0.0015019 162340 114.58 162340 114.58 820.398428361231 73.688 0.57014 73.688 73.384 73.955 0 62 19 4 0.955270506255166 0.00213878940384377 0.0648340552747902 4.3912E-22 1 17273 256.96 213.19 1 60840000 32656 13709 33368 14815 25829 32136 28329 25872 14883 19282 30904 12957 33472 15422 26680 31396 28348 26775 15255 18755 1 1 1 1 1 1 1 1 1 1 1245 490 1099 1157 1369 1369 EQISDIDDAVR 11 Unmodified _EQISDIDDAVR_ 0 0 0 0 P53999 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.391052246094 2 630.806956 1259.59936 36267.1468758527 1.4022 0.00088449 181640 114.58 181640 114.58 745.388658338963 57.868 0.81399 57.868 57.562 58.376 7.1054E-15 86 27 5 0.98762235672165 0.00216597983605835 0.115738653536566 3.0803E-06 1 13496 150.59 95.61 1 174500000 27684 20987 28212 21911 23872 26983 25675 26787 21225 23340 26199 19831 28328 22522 24503 26861 25926 27580 21131 22597 1 1 1 1 1 1 1 1 1 1 1246 706 1100 1158 1370 1370 EQNSALPTSSQDEELMEVVEK 21 Phospho (STY) _EQNSALPTS(ph)SQDEELMEVVEK_ EQNS(0.002)ALPT(0.063)S(0.504)S(0.431)QDEELMEVVEK EQNS(-25.19)ALPT(-9.01)S(0.67)S(-0.67)QDEELMEVVEK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 968.475341796875 3 815.024253 2442.05093 32728.2803768129 1.4909 0.0012151 187450 152.78 187450 152.78 968.135558590014 99.124 0.40123 99.124 98.891 99.292 1.4211E-14 33 13 4 0.791926432792654 0.00167554408680797 0.0577812320148096 0.032342 1 23019 52.509 30.288 4 11711000 5476.4 5678 6022.9 5737.6 8490.6 5620.4 10169 9244.7 6746 41388 5184.1 5364.2 6066.7 5885.6 8491.1 5762.3 10177 10380 6801.5 39186 1 1 1 1 1 1 1 1 1 1 1247 2226 1101 1159 1371 1371 4045 EQQEAIEHIDEVQNEIDR 18 Unmodified _EQQEAIEHIDEVQNEIDR_ 0 0 0 0 Q01105;P0DME0 Q01105 Q01105 SET;SETSIP Protein SET;Protein SETSIP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.73388671875 3 732.345216 2194.01382 35199.9090847446 1.3668 0.001001 104310 76.388 104310 76.389 809.06708779351 70.496 0.5241 70.496 70.215 70.739 0 34 17 2 0.985117187195782 0.00134842965633368 0.00389758397263943 8.6584E-16 1 16541 214.55 179.35 1 49592000 13615 10928 11434 11469 11538 10488 11333 13441 12582 13371 12875 10327 11640 11728 11701 10619 11580 13771 12361 12901 1 1 1 1 1 1 1 1 1 1 1248 831 1102 1160 1372 1372 EQSEVSVSPR 10 Phospho (STY) _EQSEVSVS(ph)PR_ EQSEVSVS(1)PR EQS(-109.47)EVS(-55.61)VS(55.61)PR 0 0 1 0 Q7L4I2 Q7L4I2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.843383789063 2 599.261 1196.50745 37190.9889135621 1.8894 0.0011322 191200 114.58 191210 114.58 713.84249252861 36.432 0.95791 36.432 36.086 37.044 0 83 32 3 0.892457294962313 0.0081337176351529 0.247192598064398 5.4845E-07 1 8174 170.95 71.135 3 384500000 50415 63028 54695 57408 49083 49071 50458 50006 72441 4151.5 47721 59508 54763 59153 50181 49578 51898 50249 70545 5066.4 1 1 1 1 1 1 1 1 1 1 1249 1318 1103 1161 1373 1373 2361 EQSPEKPR 8 Phospho (STY) _EQS(ph)PEKPR_ EQS(1)PEKPR EQS(60.49)PEKPR 0 0 1 1 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.601226806641 3 350.825373 1049.45429 44558.4152532101 1.4302 0.00050176 435470 152.78 435470 152.78 503.60075119463 28.477 0.45901 28.477 28.264 28.723 0 47 15 4 0.909280286894524 0.00226917704740611 0.0286168746486945 0.017426 1 6348 60.49 37.114 1 9108300 9740.5 10327 9205.3 10025 11345 10075 10244 10552 13193 3394.1 9215 9754 9324.1 10312 11374 10109 10561 10669 12893 3440.2 1 1 1 1 1 1 1 1 1 1 1250 1756 1104 1162 1374 1374 3229 EQSSDLTPSGDVSPVKPLSR 20 Phospho (STY) _EQSSDLTPSGDVS(ph)PVKPLSR_ EQSSDLTPSGDVS(1)PVKPLSR EQS(-131.42)S(-122.67)DLT(-60.53)PS(-35.5)GDVS(35.5)PVKPLS(-53.68)R 0 0 1 1 Q8WYQ5 Q8WYQ5 Q8WYQ5 DGCR8 Microprocessor complex subunit DGCR8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.123352050781 3 727.014129 2178.02056 33087.4091932719 1.541 0.0011203 210140 152.78 210140 152.78 880.123674066995 60.74 0.63573 60.74 60.489 61.124 -7.1054E-15 58 21 4 0.987049273676669 0.00439958762812724 0.0627333483740169 2.2524E-16 1 14222 230.8 200.7 6 40347000 17131 18901 17425 18216 9184.6 19137 9031.6 15534 20173 11332 16212 17852 17427 18760 9815.4 19117 9505.9 16062 19433 11030 1 1 1 1 1 1 1 1 1 1 1251 1587 1105 1163 1375 1375 2917 EQSTPPKSPQ 10 Phospho (STY) _EQSTPPKS(ph)PQ_ EQSTPPKS(1)PQ EQS(-51.62)T(-44.73)PPKS(44.73)PQ 0 0 1 1 Q92615 Q92615 Q92615 LARP4B La-related protein 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 546.284545898438 3 393.507821 1177.50163 41901.7557051519 1.5815 0.00062231 388240 152.78 388240 152.78 546.283891104659 31.63 1.146 31.63 31.181 32.327 0 121 38 4 0.729316240987085 0.0046510956507045 0.104747509965871 0.005647 1 7033 83.499 69.91 3 30882000 22025 17992 25561 16487 15876 22840 18885 20641 16695 3976.1 20854 16988 25422 17122 16724 22590 19019 20909 16566 4221.7 1 1 1 1 1 1 1 1 1 1 1252 1609 1106 1164 1376 1376 2963;4713 EQSTPPKSPQ 10 Phospho (STY) _EQSTPPKS(ph)PQ_ EQSTPPKS(1)PQ EQS(-59.95)T(-52.4)PPKS(52.4)PQ 0 0 1 1 Q92615 Q92615 Q92615 LARP4B La-related protein 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.922119140625 2 589.758093 1177.50163 36303.4015235755 2.4957 0.0014718 388570 229.16 388580 229.17 818.921622517824 31.623 1.206 31.623 31.002 32.208 -3.5527E-15 84 40 3 0.957453454342781 0.000799209958000699 0.00852495847710829 0.00021891 1 7069 118.73 101.49 3 12136000 20351 19703 19440 18700 10993 19617 12446 17461 21301 2239.7 19253 18607 19527 19276 11683 19599 12841 17665 20642 2513.1 1 1 1 1 1 1 1 1 1 1 1253 1609 1106 1164 1377 1377 2963;4713 EQSTPPKSPQ 10 2 Phospho (STY) _EQST(ph)PPKS(ph)PQ_ EQS(0.414)T(0.586)PPKS(1)PQ EQS(-1.52)T(1.52)PPKS(64.62)PQ 0 0 2 1 Q92615 Q92615 Q92615 LARP4B La-related protein 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 858.907775878906 2 629.741258 1257.46796 32576.3029819957 1.9134 0.0012049 363900 229.16 363900 229.16 858.904925039999 32.062 0.88206 32.062 31.674 32.557 0 66 29 3 0.976667960343748 0.000366877529253372 0.00956602129704887 0.00021944 1 7109 117.7 95.676 3 17656000 8229.9 9194.5 7446.9 8173.2 6206.6 8319 7404.3 7941.1 10131 3637.3 7784.7 8679.9 7530.7 8456.7 6391.3 8334.1 7554.1 8089.8 9880.7 3608.7 1 1 1 1 1 1 1 1 1 1 1254 1609 1106 1165 1378 1378 2963;4713 EQTLHTPVMMQTPQLTSTIMR 21 Phospho (STY) _EQTLHT(ph)PVMMQTPQLTSTIMR_ EQT(0.007)LHT(0.993)PVMMQTPQLTSTIMR EQT(-21.6)LHT(21.6)PVMMQT(-44.67)PQLT(-61.38)S(-66.79)T(-66.09)IMR 0 0 1 0 Q8N3U4 Q8N3U4 Q8N3U4 STAG2 Cohesin subunit SA-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 918.788024902344 3 841.731694 2522.17325 31566.4194606951 1.589 0.0013375 90749 76.386 90750 76.387 918.4520364487 84.675 0.59586 84.675 84.357 84.953 0 64 20 4 0.986319742389097 0.00503908154728083 0.134674308286814 0.0037571 1 19787 95.212 76.964 6 17732000 4007.9 5872.7 4097.6 6404.6 5398.8 5144.8 5347.9 6182.1 6223.3 43815 3792.9 5550.8 4136.8 6523.4 5402 5308.6 5470.1 7481.1 6103.4 41400 1 1 1 1 1 1 1 1 1 1 1255 1463 1107 1166 1379 1379 4677 EQTLSPTITSGLHNIAR 17 Phospho (STY) _EQTLS(ph)PTITSGLHNIAR_ EQT(0.001)LS(0.641)PT(0.297)IT(0.059)S(0.002)GLHNIAR EQT(-29.84)LS(3.34)PT(-3.34)IT(-10.38)S(-24.33)GLHNIAR 0 0 1 0 O94979 O94979 O94979 SEC31A Protein transport protein Sec31A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.708068847656 3 639.985845 1916.93571 36610.8510406003 1.6952 0.0010849 119360 76.388 119360 76.389 716.37340059136 73.269 0.51756 73.269 72.983 73.501 0 50 17 4 0.973078265875572 0.00297305992925057 0.0457981272867043 1.0674E-10 1 17181 180.56 153.76 5 33070000 6243 7714.6 5802.1 7706.1 5455.9 6085.8 6684.5 7645.8 10126 8736.4 5905.9 7287.7 5865.8 7886.9 5577.7 6208.4 6839.4 7872.1 9844.9 8403.4 1 1 1 1 1 1 1 1 1 1 1256 230 1108 1167 1380 1380 399 EQWIQDAEECDR 12 Unmodified _EQWIQDAEECDR_ 0 0 0 0 O94906 O94906 O94906 PRPF6 Pre-mRNA-processing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 904.408630371094 2 789.828094 1577.64164 33749.5930645436 0.9999 0.00078975 145070 114.58 145070 114.58 904.408729694811 65.798 0.44644 65.798 65.573 66.019 0 32 14 3 0.971543239842876 0.00137244859161545 0.0324176462319427 2.7847E-11 1 15445 210.93 180.67 1 9907300 14463 14254 12447 14108 13450 14707 14661 12999 14166 14895 13678 13464 12664 14504 13607 14721 14852 13554 13998 14326 1 1 1 1 1 1 1 1 1 1 1257 226 1109 1168 1381 1381 EQYVPPRSPK 10 Phospho (STY) _EQYVPPRS(ph)PK_ EQYVPPRS(1)PK EQY(-62.44)VPPRS(62.44)PK 0 0 1 1 Q71RC2 Q71RC2 Q71RC2 LARP4 La-related protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.315246582031 3 427.539344 1279.5962 40849.2199148546 1.7594 0.00075223 357340 152.78 357340 152.78 580.31463986833 41.816 3.4856 41.816 40.8 44.286 0 288 120 4 0.860127023383903 0.0029375690568951 0.0265180113471522 0.0041212 3 9422 88.561 53.877 2 47331000 49600 79512 52778 80129 48013 55724 53731 65101 81311 9732.2 46946 75115 52914 81844 49112 57080 55174 65231 79060 10671 3 3 3 3 3 3 3 3 3 3 1258 1309 1110 1169 1382;1383;1384 1382 2337 ERASLDK 7 Phospho (STY) _ERAS(ph)LDK_ ERAS(1)LDK ERAS(70.41)LDK 0 0 1 1 Q9NWH9 Q9NWH9 Q9NWH9 SLTM SAFB-like transcription modulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 452.914916992188 3 300.13918 897.395711 45862.8449930516 -0.2688 -8.0678E-05 509020 152.78 509020 152.78 452.914688438809 35.73 0.5512 35.73 35.475 36.026 0 53 18 4 0.747002575484587 0.00347534080146092 0.0535689097312696 0.012075 1 8026 70.412 18.244 1 46767000 40307 42731 38322 43044 34307 37976 31699 39137 45377 2230.1 38133 40369 38648 44096 35028 38310 32767 39280 44193 3005.7 1 1 1 1 1 1 1 1 1 1 1259 2054 1111 1170 1385 1385 3717 ERDHSPTPSVFNSDEER 17 Phospho (STY) _ERDHS(ph)PTPSVFNSDEER_ ERDHS(0.998)PT(0.002)PSVFNSDEER ERDHS(27.72)PT(-27.72)PS(-62.85)VFNS(-97.45)DEER 0 0 1 1 Q6UN15 Q6UN15 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.345336914063 3 694.623523 2080.84874 34787.0733150645 1.3575 0.00094298 109970 76.388 109970 76.389 771.344806770064 40.568 0.9287 40.568 40.21 41.139 0 89 31 5 0.991797084468501 0.00842686822646586 0.0604788603251118 6.2653E-16 1 9209 223.89 191.71 4 95497000 21649 21600 18718 18135 20685 22337 18566 22290 21897 7861.1 20475 20385 19037 18900 20848 22216 19091 22598 21464 7918.1 1 1 1 1 1 1 1 1 1 1 1260 1281 1112 1171 1386 1386 2280 ERDHSQLGSPSK 12 2 Phospho (STY) _ERDHS(ph)QLGS(ph)PSK_ ERDHS(1)QLGS(0.998)PS(0.002)K ERDHS(37.37)QLGS(27.23)PS(-27.23)K 0 0 2 1 B3KS81 B3KS81 B3KS81 SRRM5 Serine/arginine repetitive matrix protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.644409179688 3 500.86751 1499.5807 38929.8669950413 1.6404 0.00082162 305020 152.78 305020 152.78 653.977852184947 95.297 0.79379 95.297 94.857 95.651 0 112 27 5 0.990116648003754 0.00295014526414953 0.047481776822478 0.048182 1 22120 42.647 24.051 3 145260000 5058.2 9726.4 5481.7 10595 7023.3 5099.5 7478.5 7808.3 10480 7332.7 4788 9193.1 5515.1 10738 7045.5 5404.6 7672.8 7948.2 10213 7085.3 1 1 1 1 1 1 1 1 1 1 1261 17 1113 1172 1387 1387 33;34 ERDQRPSSPIR 11 Phospho (STY) _ERDQRPS(ph)SPIR_ ERDQRPS(0.762)S(0.238)PIR ERDQRPS(5.04)S(-5.04)PIR 0 0 1 2 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 550.61669921875 3 474.22794 1419.66199 42010.1420411799 1.5477 0.00073399 161080 76.388 161080 76.388 550.615434341175 23.505 0.43423 23.505 23.353 23.787 0 43 14 4 0.933816330831486 0.0204643876635759 0.50845475794441 0.00017814 1 5267 115.26 84.386 2 18929000 5103 6141.8 6513.9 5935.7 4670.4 5834.8 4865.6 5467.7 6105.7 1593.3 4834 5800.8 6455.8 6105.6 4852.3 5851.4 4977.4 5546.7 5971.9 1626.8 1 1 1 1 1 1 1 1 1 1 1262 1183 1114 1173 1388 1388 2059;2060 EREPEAASSRGSPVR 15 Phospho (STY) _EREPEAASSRGS(ph)PVR_ EREPEAAS(0.048)S(0.012)RGS(0.941)PVR EREPEAAS(-12.96)S(-18.99)RGS(12.96)PVR 0 0 1 2 Q53GS9 Q53GS9 Q53GS9 USP39 U4/U6.U5 tri-snRNP-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.319946289063 3 569.931852 1706.77373 38671.4347371637 1.806 0.0010293 134030 76.387 134030 76.389 646.319312152871 23.91 0.58186 23.91 23.7 24.282 0 66 19 5 0.814911181962981 0.0259844153067468 0.225793177686346 0.011489 1 5351 82.034 45.841 3 53107000 8332.4 12376 8899.9 10652 11473 9977 13443 10976 11607 11024 7886.7 11682 8964.2 11031 11517 10064 13539 11303 11530 10635 1 1 1 1 1 1 1 1 1 1 1263 1150 1115 1174 1389 1389 1999 ERESSANNSVSPSESLR 17 Phospho (STY) _ERESSANNSVS(ph)PSESLR_ ERESSANNS(0.226)VS(0.71)PS(0.064)ESLR ERES(-47.38)S(-47.38)ANNS(-4.97)VS(4.97)PS(-10.45)ES(-49.08)LR 0 0 1 1 Q04726 Q04726 Q04726 TLE3 Transducin-like enhancer protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.338134765625 3 643.616369 1927.82728 36150.7564886766 1.0502 0.00067594 118680 76.387 118690 76.388 720.338162509873 34.381 0.41471 34.381 34.191 34.606 0 38 13 4 0.963338805682646 0.00209621097901967 0.0154432495483577 3.8595E-07 1 7698 141.56 117.15 6 22044000 8580.4 8227.9 8493.4 7242.7 8866.6 8300.1 10059 7918.7 7939.7 3296.1 8118.9 7767 8564.2 7513.7 8990.7 8273.8 10124 8057.1 7923.9 3287 1 1 1 1 1 1 1 1 1 1 1264 864 1116 1175 1390 1390 1402 ERFSPPR 7 Phospho (STY) _ERFS(ph)PPR_ ERFS(1)PPR ERFS(73.84)PPR 0 0 1 1 Q9BXP5 Q9BXP5 Q9BXP5 SRRT Serrate RNA effector molecule homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 399.871215820313 3 323.48317 967.42768 49236.7464968207 -0.2862 -9.2581E-05 236140 76.388 236140 76.388 399.870794661816 40.812 2.2336 40.812 39.364 41.597 -7.1054E-15 192 76 3 0.71714191131189 0.000610871802883892 0.00554702964667337 0.010893 1 9120 73.841 31.243 1 41464000 15324 12106 13549 13200 15971 14974 12848 13944 14666 1157.7 14494 11443 13769 13515 16022 14919 13278 14062 14393 1412.8 1 1 1 1 1 1 1 1 1 1 1265 1865 1117 1176 1391 1391 3399 ERFSPPR 7 Phospho (STY) _ERFS(ph)PPR_ ERFS(1)PPR ERFS(47.23)PPR 0 0 1 1 Q9BXP5 Q9BXP5 Q9BXP5 SRRT Serrate RNA effector molecule homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.303161621094 2 484.721117 967.42768 40432.9869636907 1.0512 0.00050954 236390 114.58 236390 114.58 599.303256947647 40.855 1.3037 40.855 40.181 41.484 0 151 44 4 0.703450714175461 0.00317944173033654 0.0268659347907559 0.052497 1 9317 47.228 25.457 1 62087000 34238 61982 33589 60768 28823 32048 27216 42300 67026 4234.7 32395 58545 33798 62007 29546 33542 28871 42160 64446 4966.5 1 1 1 1 1 1 1 1 1 1 1266 1865 1117 1176 1392 1392 3399 ERHASEMR 8 Phospho (STY) _ERHAS(ph)EMR_ ERHAS(1)EMR ERHAS(43.31)EMR 0 0 1 1 P49754 P49754 P49754 VPS41 Vacuolar protein sorting-associated protein 41 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 442.204742431641 3 365.818224 1094.43284 47892.3337282805 1.1797 0.00043155 208810 76.387 208810 76.387 442.204527733326 21.69 0.26216 21.69 21.539 21.801 0 24 8 4 0.65825823685087 0.00381177668628182 0.0613806363447277 0.038576 1 4895 43.308 38.951 1 2259200 2690.4 3762.1 2840.9 3416.6 3475.6 2761.9 3307.4 2700.7 2959.4 3267.7 2546.3 3552 2859.4 3518.6 3486.9 2803 3365.2 2809.8 2934.8 3139.4 1 1 1 1 1 1 1 1 1 1 1267 649 1118 1177 1393 1393 1075 ERHPSWR 7 Phospho (STY) _ERHPS(ph)WR_ ERHPS(1)WR ERHPS(95.48)WR 0 0 1 1 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 426.210296630859 3 349.822186 1046.44473 47073.996773372 -0.31182 -0.00010908 218360 76.388 218360 76.388 426.210415807779 26.921 2.4848 26.921 26.679 29.163 0 223 85 6 0.971622046155867 0.0756097417073119 1 0.0034312 2 5982 95.483 75.493 1 873650000 139870 181930 131860 181810 170310 138070 172160 158890 174370 8111.2 132320 171860 133710 185980 170590 140620 175210 158810 171960 11315 2 2 2 2 2 2 2 2 2 2 1268 468 1119 1178 1394;1395 1394 766 ERHPSWRSEETQER 14 2 Phospho (STY) _ERHPS(ph)WRS(ph)EETQER_ ERHPS(1)WRS(0.785)EET(0.215)QER ERHPS(53.8)WRS(5.62)EET(-5.62)QER 0 0 2 2 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.65625 3 662.933354 1985.77823 36856.1006108937 1.9319 0.0012807 115230 76.387 115230 76.389 739.320855819906 29.607 1.6617 29.607 29.22 30.882 0 143 55 4 0.977904011398897 0.00188695311022403 0.0252615004341998 0.0097458 1 6579 79.293 67.854 3 23756000 6084.2 7580.2 6067.5 7352.1 8319.1 6755.3 9051.5 6997.7 8110 2261.1 5757.2 7159.4 6139.6 7553.2 8318.8 6805.1 9152.7 7078 8042 2291.1 1 1 1 1 1 1 1 1 1 1 1269 468 1120 1179 1396 1396 766;767 ERPDLEAPAPGSPFR 15 Phospho (STY) _ERPDLEAPAPGS(ph)PFR_ ERPDLEAPAPGS(1)PFR ERPDLEAPAPGS(51.5)PFR 0 0 1 1 Q9NQT8 Q9NQT8 Q9NQT8 KIF13B Kinesin-like protein KIF13B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.322692871094 3 573.601443 1717.7825 39256.1351054409 1.6858 0.00096697 133170 76.387 133170 76.388 650.323148262222 60.324 0.49325 60.324 60.107 60.601 7.1054E-15 43 16 4 0.936867922869923 0.00224193281786357 0.0175633378160852 0.032542 1 14137 51.503 27.215 1 13798000 9128.9 9294.9 8706.9 7304.8 8462.3 9807 9195.4 9215.9 8260 6708.8 8636.7 8769.2 8790 7662 8611.5 9723.6 9299.3 9469.3 8189.8 6530.4 1 1 1 1 1 1 1 1 1 1 1270 2009 1121 1180 1397 1397 3646 ERPISLGIFPLPAGDGLLTPDAQK 24 Phospho (STY) _ERPISLGIFPLPAGDGLLT(ph)PDAQK_ ERPISLGIFPLPAGDGLLT(1)PDAQK ERPIS(-62.16)LGIFPLPAGDGLLT(62.16)PDAQK 0 0 1 1 O60271 O60271 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1015.56243896484 3 862.450678 2584.3302 31566.2119607006 1.339 0.0011548 177140 152.78 177140 152.78 1015.55929853443 100.67 0.11023 100.67 100.62 100.73 0 11 3 4 0.977136435235474 0.00189388828919602 0.085932541342935 0.019797 1 23574 81.487 66.233 2 28951000 6939.7 14954 10785 14325 11492 9717.2 12454 14108 15762 72449 6581.2 14123 10649 14673 11638 10137 12722 16165 15412 68546 1 1 1 1 1 1 1 1 1 1 1271 139 1122 1181 1398 1398 4331 ERPSSFRDR 9 Phospho (STY) _ERPSS(ph)FRDR_ ERPS(0.002)S(0.998)FRDR ERPS(-27.71)S(27.71)FRDR 0 0 1 2 Q8TF01 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 486.906799316406 3 410.518943 1228.535 44059.265183012 0.47336 0.00019432 186080 76.388 186080 76.388 486.906562637313 26.641 1.0141 26.641 26.423 27.437 0 100 34 7 0.958008612303005 0.0250449313373106 0.126288288734066 0.00027856 1 5929 123.2 92.315 2 226740000 23513 31340 24386 28841 36947 22812 36269 34187 32042 4991.6 22252 29592 24657 29669 36739 23287 36836 34001 31795 5491.4 1 1 1 1 1 1 1 1 1 1 1272 1556 1123 1182 1399 1399 2857 ERPTPSLNNNCTTSEDSLVLYNR 23 Phospho (STY) _ERPTPSLNNNCTTS(ph)EDSLVLYNR_ ERPTPSLNNNCT(0.003)T(0.182)S(0.815)EDSLVLYNR ERPT(-106.4)PS(-89.68)LNNNCT(-24.55)T(-6.51)S(6.51)EDS(-66.97)LVLY(-151.39)NR 0 0 1 1 P07814 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 997.469604492188 3 920.748006 2759.22219 31089.3525879972 1.641 0.001511 82962 76.387 82963 76.388 997.469787134943 64.697 0.63035 64.697 64.508 65.138 0 46 21 3 0.976990072391331 0.00171963702561957 0.0265676173621459 3.3036E-18 1 15195 242.56 215.96 7 13125000 5898.5 2727 5888.3 3406.9 4134 6442.8 4124.5 4343.9 3464.5 10278 5581.5 2580 5908.3 3505.4 4298 6315.5 4180.7 4748.3 3446.4 9778.4 1 1 1 1 1 1 1 1 1 1 1273 322 1124 1183 1400 1400 525 ERPTSPAPHRPPK 13 Phospho (STY) _ERPT(ph)SPAPHRPPK_ ERPT(0.5)S(0.5)PAPHRPPK ERPT(0)S(0)PAPHRPPK 0 0 1 2 Q8N6T7 Q8N6T7 Q8N6T7 SIRT6 NAD-dependent protein deacetylase sirtuin-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.026672363281 4 388.196333 1548.75623 44071.3677967918 0.84966 0.00032983 295160 114.58 295160 114.58 503.028260914926 26.27 0.37858 26.27 26.045 26.423 3.5527E-15 27 12 4 0.712080693208966 0.00418314613922624 0.0892963633391678 0.035431 1 5848 53.782 31.307 2 11152000 10809 8164.7 12215 10006 6820.1 10395 8294.5 10359 8696.4 3477.4 10234 7723.4 12156 10168 7260.8 10408 8383.3 10497 8563.7 3514.1 1 1 1 1 1 1 1 1 1 1 1274 1482 1125 1184 1401 1401 2731;4685 ERPVQSLKTSR 11 Phospho (STY) _ERPVQSLKT(ph)SR_ ERPVQS(0.002)LKT(0.672)S(0.327)R ERPVQS(-26.22)LKT(3.13)S(-3.13)R 0 0 1 2 Q8NEY8 Q8NEY8 Q8NEY8 PPHLN1 Periphilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.681091308594 3 460.904686 1379.69223 39498.3039575015 0.8887 0.00040961 331470 152.78 331470 152.78 613.680411359912 36.918 0.61349 36.918 36.598 37.211 0 80 20 5 0.965692122737974 0.00908776700971312 0.0494758466922556 0.041563 1 8320 62.861 46.97 3 87815000 25700 21309 22596 21032 30104 24623 28969 22075 25612 3167.8 24307 20128 23021 21669 30087 24494 29451 22337 25414 3493.8 1 1 1 1 1 1 1 1 1 1 1275 1518 1126 1185 1402 1402 2786;4689 ERQEAEEAK 9 Unmodified _ERQEAEEAK_ 0 0 0 1 P26038 P26038 P26038 MSN Moesin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 516.619934082031 3 363.843882 1088.50982 42956.6117233709 0.80014 0.00029113 419890 152.78 419890 152.78 516.619788378355 25.53 0.23372 25.53 25.413 25.647 -3.5527E-15 21 7 3 0.866167663703022 0.00370692165504714 0.0536139054002225 1.1687E-05 1 5709 143.5 95.411 1 10580000 10306 8184.5 11508 6851.3 12296 10696 11273 11610 8358.9 2581 9756.3 7724 11527 7177.9 12414 10566 11445 11688 8371.4 2699 1 1 1 1 1 1 1 1 1 1 1276 478 1127 1186 1403 1403 ERQELGSPEER 11 Phospho (STY) _ERQELGS(ph)PEER_ ERQELGS(1)PEER ERQELGS(155.88)PEER 0 0 1 1 Q92974 Q92974 Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 546.927673339844 3 470.540072 1408.59839 42288.9907919657 1.2341 0.00058069 162340 76.387 162340 76.388 546.927370435836 29.324 0.97032 29.324 29.046 30.016 0 85 32 4 0.799784762987951 0.0034456359083964 0.0545903843765854 4.5018E-07 1 6507 155.88 122.19 1 40710000 11750 10204 10613 8867.6 10990 10714 10184 10935 10797 2032.8 11114 9631.5 10755 9216.2 11120 10663 10422 11022 10627 2167.2 1 1 1 1 1 1 1 1 1 1 1277 1636 1128 1187 1404 1404 3023 ERRPSPGEMR 10 Oxidation (M),Phospho (STY) _ERRPS(ph)PGEM(ox)R_ ERRPSPGEM(1)R ERRPS(1)PGEMR ERRPSPGEM(62.92)R ERRPS(62.92)PGEMR 0 1 1 2 Q6NYC8 Q6NYC8 Q6NYC8 PPP1R18 Phostensin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.915161132813 3 437.527221 1309.55983 43890.1978083981 1.3387 0.0005857 174590 76.388 174590 76.388 513.91498586918 20.997 0.4315 20.997 20.766 21.198 0 38 14 4 0.905133146825482 0.00326708973216079 0.029019389309805 0.011407 1 4741 62.924 27.72 1 3118300 578.63 1102.9 1325.9 1176.6 1678.9 959.78 1291.2 1207.4 1166.7 2298.9 550.33 1042.3 1295.7 1200.1 1677.3 979.15 1329.5 1270.8 1156.5 2192.6 1 1 1 1 1 1 1 1 1 1 1278 1250 1129 1188 1405 1405 160 2213 ERSAEKTEK 9 Phospho (STY) _ERS(ph)AEKTEK_ ERS(1)AEKTEK ERS(86.78)AEKT(-86.78)EK 0 0 1 2 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 462.008209228516 4 290.135409 1156.51253 44565.3850489021 0.98349 0.00028534 592390 171.87 592390 171.87 462.008478488851 27.879 0.88636 27.879 27.694 28.581 0 68 30 4 0.928916881883486 0.00816535882387792 0.17670856662776 2.3903E-05 1 6210 136.99 100.68 2 31794000 22904 23443 26529 22226 35538 24053 36289 30822 26460 2620 21687 22139 26616 22925 35534 24118 36634 30733 26525 3180.3 1 1 1 1 1 1 1 1 1 1 1279 2257 1130 1189 1406 1406 4170 ERSDSGGSSSEPFDR 15 Phospho (STY) _ERSDS(ph)GGSSSEPFDR_ ERS(0.087)DS(0.839)GGS(0.02)S(0.022)S(0.031)EPFDR ERS(-9.83)DS(9.83)GGS(-16.3)S(-15.73)S(-14.29)EPFDR 0 0 1 1 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.612426757813 3 564.888089 1691.64244 39824.3672624369 1.0715 0.00060527 135230 76.388 135230 76.389 641.611097865376 34.842 0.57751 34.842 34.633 35.211 0 48 19 4 0.541569898093044 0.00185118719767149 0.0266292400670478 0.04758 1 7832 41.615 22.557 5 16092000 22071 25983 23013 29840 22995 24946 26631 26072 31592 4770.2 20888 24567 23126 30324 23392 25246 27069 26252 30961 5095.1 1 1 1 1 1 1 1 1 1 1 1280 624 1131 1190 1407 1407 1027 ERSDYDRSR 9 Phospho (STY) _ERSDYDRS(ph)R_ ERSDYDRS(1)R ERS(-50.28)DY(-38.28)DRS(38.28)R 0 0 1 2 Q9BXP5 Q9BXP5 Q9BXP5 SRRT Serrate RNA effector molecule homolog MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 498.230010986328 3 421.841974 1262.50409 NaN NaN NaN NaN NaN NaN NaN NaN 21.152 1 21.152 20.652 21.652 0 NaN NaN NaN 0.055248 1 4785 63.944 30.162 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1281 1865 1132 1191 1408 1408 3400 ERSLSRER 8 2 Phospho (STY) _ERS(ph)LS(ph)RER_ ERS(1)LS(1)RER ERS(45.36)LS(45.36)RER 0 0 2 2 P84103 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 474.555206298828 3 398.167232 1191.47987 45922.5749526464 0.59498 0.0002369 191850 76.388 191850 76.388 474.555067135294 24.209 3.2697 24.209 23.556 26.826 -3.5527E-15 334 112 5 0.985977306470827 0.0118231120668084 0.162333412327362 0.044171 1 5504 45.357 23.415 1 52106000 8805.5 9350.5 9544.4 8983.1 10033 9964.7 11415 7221.8 11108 3419.3 8335 8831 9576.7 9261.7 10172 9916.4 11545 7453.3 10973 3386.8 1 1 1 1 1 1 1 1 1 1 1282 814 1133 1192 1409 1409 1299;1300 ERSMSENAVR 10 Phospho (STY) _ERS(ph)MSENAVR_ ERS(0.983)MS(0.017)ENAVR ERS(17.63)MS(-17.63)ENAVR 0 0 1 1 Q9GZY8 Q9GZY8 Q9GZY8 MFF Mitochondrial fission factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.349182128906 2 629.765926 1257.5173 35964.590865467 1.825 0.0011493 181940 114.58 181940 114.58 744.347619429726 29.421 0.38652 29.421 29.22 29.606 0 35 12 4 0.989336617592653 0.00189598567716824 0.0421011930007784 1.1668E-06 1 6550 164.06 127.47 2 26169000 19694 16946 19607 17681 16132 21990 16499 18426 18707 3017.8 18636 16012 19706 18179 16583 21810 16837 18712 18364 3268.1 1 1 1 1 1 1 1 1 1 1 1283 1895 1134 1193 1410 1410 3449 ERSPALK 7 Phospho (STY) _ERS(ph)PALK_ ERS(1)PALK ERS(87.94)PALK 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 446.923187255859 3 294.147787 879.421532 46496.3491158572 0.98818 0.00029067 519380 152.78 519380 152.78 446.923572086158 36.129 1.2791 36.129 35.765 37.044 -7.1054E-15 150 43 5 0.973137616345054 0.00946120917925244 0.103812167314471 0.0060312 1 8085 87.942 26.462 1 955370000 32733 36167 34252 35653 47521 30709 50280 41573 37395 1774.7 30979 34162 34570 36560 47468 31142 50695 41334 37444 2633.3 1 1 1 1 1 1 1 1 1 1 1284 2257 1135 1194 1411 1411 4171 ERSPALK 7 Phospho (STY) _ERS(ph)PALK_ ERS(1)PALK ERS(65.25)PALK 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.881958007813 2 440.718043 879.421532 38325.3738452844 2.3147 0.0010201 519980 229.16 519980 229.16 669.881127211015 36.133 1.2729 36.133 35.622 36.895 0 117 43 4 0.682331136143203 0.00464790489377664 0.115184663395591 0.02116 1 8096 65.252 7.6929 1 390460000 36963 33490 35868 34682 47922 37900 53414 41321 35469 4074.8 34972 31643 36338 35589 47980 37896 53616 41438 35759 4793.2 1 1 1 1 1 1 1 1 1 1 1285 2257 1135 1194 1412 1412 4171 ERSPALKSPLQSVVVR 16 Phospho (STY) _ERS(ph)PALKSPLQSVVVR_ ERS(1)PALKSPLQSVVVR ERS(51.53)PALKS(-51.53)PLQS(-74.55)VVVR 0 0 1 2 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.113525390625 3 616.003059 1844.98735 35895.8165352693 2.0271 0.0012487 248010 152.78 248010 152.78 769.112576885957 67.524 1.0336 67.524 67.09 68.124 0 141 34 6 0.995763927708638 0.00869504752231744 0.191222978352811 5.5639E-07 1 15801 154.79 133.26 3 200590000 19721 20724 19526 19446 41075 20526 43303 30908 22785 12311 18660 19570 19941 20062 40423 20680 43410 30971 23352 12308 1 1 1 1 1 1 1 1 1 1 1286 2257 1136 1195 1413 1413 4171;4172 ERSPALKSPLQSVVVR 16 2 Phospho (STY) _ERS(ph)PALKS(ph)PLQSVVVR_ ERS(1)PALKS(1)PLQSVVVR ERS(93.95)PALKS(36.82)PLQS(-36.82)VVVR 0 0 2 2 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 596.82763671875 4 482.245696 1924.95368 39871.0197845447 1.9037 0.00091807 237600 114.58 237600 114.58 597.077698860256 68.116 2.1112 68.116 67.705 69.816 0 234 71 5 0.954256090733034 0.00291819085421288 0.035456022675491 7.4606E-05 1 15935 122.34 100.74 3 60602000 3330.4 4302.9 4226.9 3723.4 4580.1 3727 3661 4034.1 4945.8 2913 3154.8 4061.5 4207.3 3858.5 4615.2 3744.9 3805.9 4122.4 4825.6 2836.3 1 1 1 1 1 1 1 1 1 1 1287 2257 1136 1196 1414 1414 4171;4172 ERSPALKSPLQSVVVR 16 2 Phospho (STY) _ERS(ph)PALKS(ph)PLQSVVVR_ ERS(1)PALKS(0.63)PLQS(0.37)VVVR ERS(70.89)PALKS(2.31)PLQS(-2.31)VVVR 0 0 2 2 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.434814453125 3 642.658502 1924.95368 35381.7797841513 2.4251 0.0015585 237720 152.78 237730 152.78 795.767867866991 68.094 2.4281 68.094 67.645 70.073 0 273 82 6 0.995402729981587 0.0036491740577933 0.0268624011671749 3.0945E-07 1 16119 160.36 134.49 3 157300000 26250 32698 23928 31913 25637 24308 25166 30581 33916 19307 24830 30885 24247 32693 25917 24820 25879 31014 33094 18888 1 1 1 1 1 1 1 1 1 1 1288 2257 1136 1196 1415 1415 4171;4172 ERSPSPLR 8 Phospho (STY) _ERS(ph)PSPLR_ ERS(0.81)PS(0.19)PLR ERS(6.31)PS(-6.31)PLR 0 0 1 1 Q9Y2V2 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.827575683594 2 511.244956 1020.47536 39914.27971062 1.5747 0.00080507 224120 114.58 224120 114.58 625.826514811065 29.339 0.99978 29.339 29.016 30.016 0 66 33 3 0.89040008641769 0.00551738559843381 0.246394777547905 0.0049 1 6534 94.363 43.558 2 44394000 29261 11942 28294 10863 42634 29682 44593 28414 11494 3817.4 27685 11275 28725 11522 42415 28903 44391 28665 12745 4252.1 1 1 1 1 1 1 1 1 1 1 1289 2256 1137 1197 1416 1416 4164;4165 ERSPSPLRGNVVPSPLPTR 19 2 Phospho (STY) _ERS(ph)PS(ph)PLRGNVVPSPLPTR_ ERS(1)PS(1)PLRGNVVPSPLPTR ERS(59.32)PS(55.37)PLRGNVVPS(-55.37)PLPT(-62.14)R 0 0 2 2 Q9Y2V2 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 817.086791992188 3 740.362637 2218.06608 34604.7316105509 2.0711 0.0015333 103180 76.388 103180 76.389 817.084679621581 63.368 2.407 63.368 62.703 65.11 -7.1054E-15 290 82 5 0.98551034419664 0.00483588290781132 0.0331762476895011 0.0017264 3 14787 97.691 79.234 6 61913000 57970 59541 61040 65728 42947 64476 44060 56911 72792 34334 54866 56282 61068 67090 44694 64654 45583 58414 70605 33647 3 3 3 3 3 3 3 3 3 3 1290 2256 1138 1198 1417;1418;1419 1417 4164;4165;4166 ERSPSPPTIQSK 12 2 Phospho (STY) _ERS(ph)PS(ph)PPTIQSK_ ERS(1)PS(1)PPTIQSK ERS(56.55)PS(36.19)PPT(-36.19)IQS(-79.56)K 0 0 2 1 Q14687 Q14687 Q14687 GSE1 Genetic suppressor element 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.992309570313 3 496.21614 1485.62659 38380.7311754741 1.7528 0.00086976 307880 152.78 307880 152.78 648.991239202838 45.384 2.649 45.384 43.757 46.406 0 281 90 4 0.983614212709657 0.00754322753015345 0.127475272644914 1.0534E-06 1 10377 138.56 102.8 6 85450000 17253 31989 19659 28047 26728 22443 31429 28280 33750 3422.8 16334 30196 19752 28949 26775 22826 31830 28244 33203 3877.5 1 1 1 1 1 1 1 1 1 1 1291 1022 1139 1199 1420 1420 1745;1746 ERSPSPSFR 9 2 Phospho (STY) _ERS(ph)PS(ph)PSFR_ ERS(0.988)PS(0.606)PS(0.406)FR ERS(17.06)PS(1.78)PS(-1.78)FR 0 0 2 1 P49585 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.318664550781 2 611.73631 1221.45807 37632.3925206153 1.2823 0.00078444 187310 114.58 187310 114.58 726.317916878223 34.791 1.4522 34.791 34.313 35.765 0 93 49 3 0.946792464630549 0.000553975874395403 0.0156178313659175 0.047552 1 7849 47.062 35.719 3 9835500 10672 14370 11640 13270 13716 10314 13636 12159 12196 3522.6 10102 13568 11691 13644 13794 10500 13844 12231 12094 3598.3 1 1 1 1 1 1 1 1 1 1 1292 641 1140 1200 1421 1421 1061;1062 ERSPYKR 7 Phospho (STY) _ERS(ph)PYKR_ ERS(0.996)PY(0.004)KR ERS(23.84)PY(-23.84)KR 0 0 1 2 Q8NEY8 Q8NEY8 Q8NEY8 PPHLN1 Periphilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 491.938446044922 3 339.162208 1014.46479 44758.3340839488 0.84744 0.00028742 450450 152.78 450450 152.78 491.937984238414 25.287 1.6763 25.287 25.064 26.74 -3.5527E-15 131 57 5 0.995377714319755 0.0479310990425788 0.448166392640764 0.049891 1 5631 50.297 20.042 2 231430000 60586 43317 63048 42368 47682 60625 58265 54731 48182 13379 57339 40914 63176 43853 49435 59904 58524 55530 47969 13864 1 1 1 1 1 1 1 1 1 1 1293 1518 1141 1201 1422 1422 2787 ERTESEVPPRPASPK 15 Phospho (STY) _ERTESEVPPRPAS(ph)PK_ ERTESEVPPRPAS(1)PK ERT(-70.03)ES(-69.74)EVPPRPAS(69.74)PK 0 0 1 2 Q9Y3L3 Q9Y3L3 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.059753417969 3 587.284002 1758.83018 36950.8648175107 1.4207 0.00083433 260140 152.78 260140 152.78 740.059621989107 34.06 0.31815 34.06 33.816 34.134 0 12 10 2 0.957163199257594 0.000447592225982906 0.00944922551179908 0.00026734 1 7633 101.49 73.281 3 6270700 7135 6683.6 8155.2 6145.9 10920 7498.2 10563 7230.3 6201.1 6037.9 6755.4 6310.7 8186.4 6365 10910 7463.4 10650 7444.8 6303.7 5852.7 1 1 1 1 1 1 1 1 1 1 1294 2268 1142 1202 1423 1423 4195 ERVPDSPSPAPSLEEGR 17 Phospho (STY) _ERVPDS(ph)PSPAPSLEEGR_ ERVPDS(0.925)PS(0.075)PAPSLEEGR ERVPDS(10.94)PS(-10.94)PAPS(-61.12)LEEGR 0 0 1 1 Q9UI36 Q9UI36 Q9UI36 DACH1 Dachshund homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 711.346435546875 3 634.957955 1901.85204 36768.1972022406 1.0713 0.00068023 120300 76.387 120300 76.388 711.344941284513 47.509 0.53397 47.509 47.412 47.946 0 64 18 4 0.907173276190272 0.000605453613398997 0.00338900551034179 3.2171E-07 2 11003 147.3 128 3 30674000 23816 17104 26091 17663 23163 26978 24147 21961 17973 15187 22545 16161 26107 18252 23687 26591 24363 22681 17996 14808 2 2 2 2 2 2 2 2 2 2 1295 2154 1143 1203 1424;1425 1424 3877 ESASPTIPNLDLLEAHTK 18 Phospho (STY) _ESAS(ph)PTIPNLDLLEAHTK_ ES(0.014)AS(0.957)PT(0.028)IPNLDLLEAHTK ES(-18.22)AS(15.33)PT(-15.33)IPNLDLLEAHT(-203.54)K 0 0 1 0 O75151 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.439147949219 3 672.661027 2014.96125 35162.8136754519 1.8796 0.0012644 227120 152.78 227120 152.78 825.43687695971 89.323 0.81307 89.323 88.763 89.576 1.4211E-14 87 27 4 0.985229039958491 0.00268718154406979 0.100288631068565 1.3579E-22 1 20788 251.09 198.03 4 21949000 10658 6156 9255.2 6438.2 5380.5 10217 5846.2 8068.2 7251 16426 10080 5817 9353.5 6654.1 5696.8 10077 5967 8671.2 7095 15654 1 1 1 1 1 1 1 1 1 1 1296 170 1144 1204 1426 1426 295 ESDQTLAALLSPK 13 Phospho (STY) _ESDQTLAALLS(ph)PK_ ESDQTLAALLS(1)PK ES(-93.62)DQT(-87.24)LAALLS(87.24)PK 0 0 1 0 P18583 P18583 P18583 SON Protein SON MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.015502929688 3 484.90424 1451.69089 39320.5315633307 2.2402 0.0010863 315060 152.78 315060 152.78 637.67943705521 92.212 1.3828 92.212 91.766 93.149 0 172 47 6 0.954175183037602 0.00757373412195087 0.157938649233843 5.2393E-05 2 21425 127.32 74.868 3 271700000 9110.2 12627 10054 13931 8382.3 10728 9966.4 11897 15547 19317 8624.1 11936 10052 14173 8632.7 10947 10222 12470 15104 18465 2 2 2 2 2 2 2 2 2 2 1297 428 1145 1205 1427;1428 1427 688 ESEDSETQPFDTHLEAYGPCLSPPR 25 Phospho (STY) _ESEDSETQPFDTHLEAYGPCLS(ph)PPR_ ESEDSETQPFDTHLEAYGPCLS(1)PPR ES(-175.28)EDS(-160.18)ET(-136.78)QPFDT(-96.27)HLEAY(-89.56)GPCLS(89.56)PPR 0 0 1 0 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1058.13842773438 3 981.411059 2941.21135 31270.77891421 1.6663 0.0016353 77835 76.388 77837 76.39 1058.46632949124 78.677 1.042 78.677 78.092 79.134 0 112 35 4 0.972618393322638 0.00287969855068737 0.0399301933346426 5.3015E-18 1 18407 237.01 212.61 6 18865000 4763.2 2772 4429.9 2749.7 3018.9 5497.1 2426.9 4388.9 4071 28259 4506 2618.5 4461.4 2868.8 3140 5426.7 2543.8 5296.9 3947.1 26711 1 1 1 1 1 1 1 1 1 1 1298 1016 1146 1206 1429 1429 1728 ESEELLK 7 Phospho (STY) _ES(ph)EELLK_ ES(1)EELLK ES(95.5)EELLK 0 0 1 0 O43303 O43303 O43303 CCP110 Centriolar coiled-coil protein of 110 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.370910644531 2 464.207173 926.399794 37695.1600030219 2.0188 0.00093712 493670 229.16 493670 229.16 693.370624916351 59.535 0.66021 59.535 59.247 59.907 -7.1054E-15 54 22 3 0.91361015747419 0.00215720132832462 0.102602202001003 0.0057877 1 13946 95.502 25.903 1 27324000 33451 21555 37561 21925 23824 36681 24314 29120 20294 8183.5 31668 20364 37418 22726 24991 36029 24616 29749 20194 8379.7 1 1 1 1 1 1 1 1 1 1 1299 104 1147 1207 1430 1430 172 ESEITDEDIDGILER 15 Unmodified _ESEITDEDIDGILER_ 0 0 0 0 O60264 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.994262695313 3 578.607378 1732.8003 38623.4216140393 1.9579 0.0011329 132020 76.386 132020 76.388 654.993816491623 82.219 0.4584 82.219 81.97 82.428 -1.4211E-14 35 15 3 0.896013541694115 0.00104574158620143 0.0171842573092362 4.4506E-07 1 19241 157.68 132.32 1 10666000 4954.9 4449.2 4685.9 4721.6 5527.2 4249.9 5258.9 4471.7 4753.7 9312.6 4687.6 4204.6 4743.7 4823.7 5555 4301.3 5352.2 4757.4 4711.9 8872.4 1 1 1 1 1 1 1 1 1 1 1300 138 1148 1208 1431 1431 ESENSGDSGYPSEK 14 Phospho (STY) _ESENSGDSGYPS(ph)EK_ ESENSGDSGYPS(1)EK ES(-224.51)ENS(-143.44)GDS(-78.97)GY(-168.59)PS(78.97)EK 0 0 1 0 O00418 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1012.44818115234 2 783.285597 1564.55664 31150.7544188942 1.905 0.0014921 292570 229.16 292570 229.16 1012.9498423416 38.574 0.39979 38.574 38.354 38.754 0 33 13 3 0.971769477510519 0.00096695986361442 0.0241974657054537 1.7738E-31 1 8736 308.36 249.21 5 19759000 17728 16208 20014 15908 13099 21008 13786 16292 18114 1317.8 16784 15309 19938 16434 13715 20773 14118 16564 17689 1617.9 1 1 1 1 1 1 1 1 1 1 1301 45 1149 1209 1432 1432 67 ESESSPGQLSISLR 14 Phospho (STY) _ES(ph)ESSPGQLSISLR_ ES(0.43)ES(0.43)S(0.07)PGQLS(0.07)ISLR ES(0)ES(0)S(-7.87)PGQLS(-7.87)IS(-45.36)LR 0 0 1 0 P42684 P42684 P42684 ABL2 Abelson tyrosine-protein kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 600.632751464844 3 523.910054 1568.70833 40335.7348495896 1.2514 0.00065561 145800 76.387 145800 76.388 600.296931798382 45.772 0.5242 45.772 45.526 46.05 7.1054E-15 40 17 4 0.949407462692727 0.00250248005336006 0.0237538564334793 0.033432 1 10546 50.897 15.374 5 18911000 10051 10685 11071 10665 11423 12439 13173 13302 11963 2876.1 9514.3 10093 11097 10980 11595 12406 13292 13396 11856 3016 1 1 1 1 1 1 1 1 1 1 1302 590 1150 1210 1433 1433 956;957 ESHLIELNIENPDDR 15 Unmodified _ESHLIELNIENPDDR_ 0 0 0 0 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.015258789063 3 598.626995 1792.85916 39408.2566733383 1.7706 0.0010599 127600 76.388 127610 76.389 675.349656529874 69.172 0.46154 69.172 68.941 69.402 0 36 15 3 0.86037368590463 0.000944911261800343 0.0135273785246058 7.2455E-07 1 16241 146.16 114.93 1 6726600 8092 6669.9 6884.2 8135.7 7390.6 7504.6 7153.5 8472.9 8510 6533.5 7652.6 6309.2 7007.2 8253.9 7468 7574.9 7330.2 8658.3 8339.3 6348.2 1 1 1 1 1 1 1 1 1 1 1303 2028 1151 1211 1434 1434 ESIPSLPQSPMR 12 Phospho (STY) _ESIPSLPQS(ph)PMR_ ES(0.001)IPS(0.063)LPQS(0.936)PMR ES(-31.26)IPS(-11.73)LPQS(11.73)PMR 0 0 1 0 Q8NEZ4 Q8NEZ4 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 826.41455078125 2 711.32836 1420.64217 34207.2553717946 1.9245 0.0013689 161080 114.58 161090 114.58 826.414315205848 69.636 0.46966 69.636 69.346 69.816 0 34 15 4 0.386961201690373 0.000931002522541546 0.0761631778924508 0.035341 1 16350 57.804 31.018 3 9221500 15752 17629 15557 14309 14098 13951 12208 15838 16487 19075 14904 16635 15655 14889 14370 14060 12634 16389 16087 18328 1 1 1 1 1 1 1 1 1 1 1304 1519 1152 1212 1435 1435 2789 ESISPQPADSACSSPAPSTGK 21 Phospho (STY) _ESIS(ph)PQPADSACSSPAPSTGK_ ES(0.023)IS(0.977)PQPADSACSSPAPSTGK ES(-16.28)IS(16.28)PQPADS(-57.18)ACS(-118.13)S(-138.89)PAPS(-179.4)T(-183.31)GK 0 0 1 0 Q9GZR1 Q9GZR1 Q9GZR1 SENP6 Sentrin-specific protease 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.414001464844 3 718.640074 2152.89839 33937.2626554952 1.0825 0.00077796 212590 152.77 212590 152.77 871.413909446143 48.615 0.4322 48.615 48.392 48.824 0 34 14 3 0.861170414250115 0.00115214000019574 0.00628656536061631 2.3313E-16 1 11273 216.76 199.27 7 57948000 19639 9962.5 22473 8078.6 10240 20291 10501 14786 9052.1 8281.1 18594 9400.5 22317 8606.1 11116 19740 10637 15295 8993.2 8139.9 1 1 1 1 1 1 1 1 1 1 1305 1890 1153 1213 1436 1436 3443 ESKDPADETEAD 12 Unmodified _ESKDPADETEAD_ 0 0 0 1 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.932250976563 2 653.767694 1305.52083 33561.8593559661 1.5961 0.0010435 350530 229.16 350530 229.16 882.930708759823 34.994 0.6981 34.994 34.662 35.36 0 93 23 6 0.884065553941644 0.00417661376584114 0.106876068449375 2.6832E-07 1 7813 149.95 134.47 1 518780000 31310 51922 32713 48374 38957 29177 40518 42681 53597 1413.1 29632 49029 32939 49577 39200 30275 41527 42331 52330 2318.4 1 1 1 1 1 1 1 1 1 1 1306 411 1154 1214 1437 1437 ESKGSPVFLPR 11 Phospho (STY) _ESKGS(ph)PVFLPR_ ES(0.411)KGS(0.589)PVFLPR ES(-1.56)KGS(1.56)PVFLPR 0 0 1 1 Q9NYV4 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.993835449219 3 432.883111 1295.6275 40704.9259485446 2.1025 0.00091015 352920 152.78 352930 152.78 585.658331625986 63.876 0.92381 63.876 63.491 64.415 7.1054E-15 115 31 5 0.982965274677335 0.00589476650964862 0.057825829730291 0.0095342 1 14944 71.286 32.487 2 170940000 16063 13660 15639 15217 15191 16673 17072 16018 17128 12740 15198 12913 15770 15553 15469 16663 17289 16476 16897 12367 1 1 1 1 1 1 1 1 1 1 1307 2077 1155 1215 1438 1438 3762 ESLCDSPHQNLSR 13 Phospho (STY) _ESLCDS(ph)PHQNLSR_ ESLCDS(1)PHQNLSR ES(-52.38)LCDS(52.38)PHQNLS(-62.02)R 0 0 1 0 O15042 O15042 O15042 U2SURP U2 snRNP-associated SURP motif-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.948059082031 3 541.559138 1621.65558 40139.2128238891 1.5914 0.00086182 141050 76.388 141050 76.388 617.94697113793 38.063 0.58415 38.063 37.799 38.383 0 39 19 3 0.909520257676383 0.00125813892789539 0.0152758985513247 0.00012923 1 8628 110.44 88.009 3 11008000 12678 8990.5 12302 9534.5 10386 12590 9439.6 11003 8476.8 4125.1 11995 8496.1 12384 9805.6 10639 12471 9627.8 11223 8404.9 4139 1 1 1 1 1 1 1 1 1 1 1308 77 1156 1216 1439 1439 135 ESLKEEDESDDDNM 14 Oxidation (M),Phospho (STY) _ESLKEEDES(ph)DDDNM(ox)_ ESLKEEDESDDDNM(1) ESLKEEDES(1)DDDNM ESLKEEDESDDDNM(137.52) ES(-57.74)LKEEDES(57.74)DDDNM 0 1 1 1 P25788 P25788 P25788 PSMA3 Proteasome subunit alpha type-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.309997558594 3 584.53276 1750.57645 36005.9794714041 1.9683 0.0011506 261360 152.78 261370 152.78 737.309135536178 45.217 3.6277 45.217 43.609 47.237 0 250 124 4 0.575037550316649 0.00147465841531217 0.0265304160426736 1.1909E-05 2 10224 137.52 125.16 2 23674000 43860 44152 41647 45096 40552 42479 40208 46119 49926 17437 41495 41714 42049 46204 41221 42774 41211 46645 48850 17487 2 2 2 2 2 2 2 2 2 2 1309 477 1157 1217 1440;1441 1440 64 789 ESLKEEDESDDDNM 14 Oxidation (M),Phospho (STY) _ESLKEEDES(ph)DDDNM(ox)_ ESLKEEDESDDDNM(1) ESLKEEDES(1)DDDNM ESLKEEDESDDDNM(100.42) ES(-65.07)LKEEDES(65.07)DDDNM 0 1 1 1 P25788 P25788 P25788 PSMA3 Proteasome subunit alpha type-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1105.96105957031 2 876.295502 1750.57645 30497.2813467593 1.7579 0.0015405 261510 229.16 261520 229.16 1105.96003045353 44.988 1.7076 44.988 43.728 45.436 0 143 58 3 1 0.00033295673757517 0.00199516794646599 0.00063562 1 10430 100.42 93.532 2 12164000 7908.4 9036.5 9041.9 8050.3 12318 9430.9 12309 11228 11485 6216.2 7487.7 8530.8 9079.6 8348.2 12306 9425.7 12507 11381 11367 6113.2 1 1 1 1 1 1 1 1 1 1 1310 477 1157 1217 1442 1442 64 789 ESLKEEDESDDDNM 14 Oxidation (M),Phospho (STY) _ESLKEEDES(ph)DDDNM(ox)_ ESLKEEDESDDDNM(1) ES(0.001)LKEEDES(0.999)DDDNM ESLKEEDESDDDNM(91.66) ES(-29.69)LKEEDES(29.69)DDDNM 0 1 1 1 P25788 P25788 P25788 PSMA3 Proteasome subunit alpha type-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.307922363281 3 584.53276 1750.57645 36474.7344897202 1.4688 0.00085858 261360 152.78 261360 152.78 737.642579227999 48.143 0.99288 48.143 47.541 48.534 -7.1054E-15 78 33 4 0.738393006939329 0.00127158189055459 0.00707116679331931 0.0064323 1 11127 91.657 79.68 2 17594000 16484 18506 20195 20674 13420 18351 14324 17737 18894 12323 15612 17494 20040 21058 14036 18513 14662 18186 18449 12014 1 1 1 1 1 1 1 1 1 1 1311 477 1157 1217 1443 1443 64 789 ESLKEEDESDDDNM 14 Oxidation (M),Phospho (STY) _ESLKEEDES(ph)DDDNM(ox)_ ESLKEEDESDDDNM(1) ESLKEEDES(1)DDDNM ESLKEEDESDDDNM(147.24) ES(-70.39)LKEEDES(70.39)DDDNM 0 1 1 1 P25788 P25788 P25788 PSMA3 Proteasome subunit alpha type-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.310852050781 3 584.53276 1750.57645 36235.5811359279 2.1159 0.0012368 261360 152.78 261370 152.78 737.643199886199 49.284 1.1533 49.284 48.651 49.804 0 83 39 3 0.77483880727904 0.000505824936531148 0.00504641911774501 1.2043E-06 1 11331 147.24 135.8 2 10853000 11972 12509 11203 13370 9897.1 11799 10554 11046 13683 8287.7 11326 11822 11310 13651 10133 11903 10797 11359 13368 8059.5 1 1 1 1 1 1 1 1 1 1 1312 477 1157 1217 1444 1444 64 789 ESLKEEDESDDDNM 14 Phospho (STY) _ESLKEEDES(ph)DDDNM_ ESLKEEDES(1)DDDNM ES(-69.36)LKEEDES(69.36)DDDNM 0 0 1 1 P25788 P25788 P25788 PSMA3 Proteasome subunit alpha type-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1097.46166992188 2 868.298044 1734.58154 30059.3336726442 1.6201 0.0014068 263920 229.16 263920 229.16 1097.46020011918 54.49 8.1254 54.49 53.323 61.448 0 718 278 3 0.983539395410782 0.00112451206975629 0.0178518512376567 6.4764E-05 7 13061 130.29 118.37 2 55450000 91564 118330 97657 114570 91775 97005 98016 112150 125210 50237 86666 111760 97924 117590 93595 98302 100220 113420 122390 49899 7 7 7 7 7 7 7 7 7 7 1313 477 1157 1218 1445;1446;1447;1448;1449;1450;1451 1446 789 ESLKEEDESDDDNM 14 Phospho (STY) _ESLKEEDES(ph)DDDNM_ ESLKEEDES(1)DDDNM ES(-69.79)LKEEDES(69.79)DDDNM 0 0 1 1 P25788 P25788 P25788 PSMA3 Proteasome subunit alpha type-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.312072753906 3 579.201122 1734.58154 35935.8859324695 1.6379 0.00094865 263770 152.77 263770 152.78 732.310532530875 54.486 4.846 54.486 53.475 58.321 0 485 165 3 0.99320558801558 0.00369868339665183 0.0260672896795052 5.4359E-05 2 12674 127.88 120.99 2 64469000 47327 54288 50411 60009 44396 53976 51267 55370 59477 20335 44795 51316 50523 61169 45513 54428 52081 56099 58338 20430 2 2 2 2 2 2 2 2 2 2 1314 477 1157 1218 1452;1453 1452 789 ESLKEEDESDDDNM 14 Phospho (STY) _ESLKEEDES(ph)DDDNM_ ESLKEEDES(1)DDDNM ES(-36.94)LKEEDES(36.94)DDDNM 0 0 1 1 P25788 P25788 P25788 PSMA3 Proteasome subunit alpha type-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.310729980469 3 579.201122 1734.58154 36453.3428023218 1.8096 0.0010481 263760 152.77 263770 152.77 732.308816345896 59.178 1.6709 59.178 58.846 60.517 0 130 57 5 0.788710151491025 0.00264924355295153 0.0455327098557368 0.012951 1 13876 65.107 56.506 2 14630000 17948 14865 19621 16511 14578 19437 18243 16202 15387 7554.8 16990 14051 19606 16900 15141 19326 18316 16605 15303 7488.7 1 1 1 1 1 1 1 1 1 1 1315 477 1157 1218 1454 1454 789 ESLPPAAEPSPVSK 14 Phospho (STY) _ESLPPAAEPS(ph)PVSK_ ESLPPAAEPS(0.995)PVS(0.005)K ES(-66.1)LPPAAEPS(22.99)PVS(-22.99)K 0 0 1 0 Q9NWT1 Q9NWT1 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.680419921875 3 496.90424 1487.69089 38012.8156166633 1.7091 0.00084927 307460 152.78 307460 152.78 650.015236040082 59.11 1.7034 59.11 58.404 60.107 0 161 58 4 0.985029343732822 0.00118308992766647 0.0310625089544443 0.0062 1 13818 84.468 59.748 3 17376000 10178 9011.3 10876 8938.6 9028.8 9755.8 8122.4 9728.2 8990.8 5729.6 9633.9 8512.2 10887 9195.5 9259.6 9752.7 8335.2 9931.8 8834.4 5620.2 1 1 1 1 1 1 1 1 1 1 1316 2055 1158 1219 1455 1455 3721 ESNYFGLSPEER 12 Phospho (STY) _ESNYFGLS(ph)PEER_ ESNYFGLS(1)PEER ES(-59.94)NY(-69.19)FGLS(59.94)PEER 0 0 1 0 Q01804 Q01804 Q01804 OTUD4 OTU domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 868.892028808594 2 754.308678 1506.6028 32490.2531303489 1.6219 0.0012234 151900 114.58 151900 114.58 868.889341476008 71.524 0.49448 71.524 71.256 71.751 0 34 16 4 0.774786783179461 0.000898153299634803 0.0339733170109855 6.4489E-05 1 16790 129.29 96.361 3 9414500 10438 13221 11164 12483 9565 11499 10277 12420 13614 37500 9880 12485 11182 12847 9814.2 11652 10518 13552 13291 35599 1 1 1 1 1 1 1 1 1 1 1317 842 1159 1220 1456 1456 1359 ESPGAAATSSSGPQAQQHR 19 Phospho (STY) _ES(ph)PGAAATSSSGPQAQQHR_ ES(1)PGAAATSSSGPQAQQHR ES(69.54)PGAAAT(-69.54)S(-99.54)S(-114.48)S(-128.26)GPQAQQHR 0 0 1 0 Q7L2J0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.338256835938 3 649.616592 1945.82795 36581.223934533 1.2694 0.00082459 117590 76.387 117590 76.388 726.337956619001 26.69 0.25691 26.69 26.514 26.771 0 14 8 3 0.832512337810366 0.00200285608417764 0.00734590632183272 3.0049E-11 1 5957 196.83 172.3 5 11221000 2364.7 2030 2574.5 3493.2 2668.4 2172.6 3073 2996.5 2442.7 2378.1 2238.4 1926 2582.2 3476.2 2707.5 2251.5 3091.3 3045.4 2436.9 2308.6 1 1 1 1 1 1 1 1 1 1 1318 1317 1160 1221 1457 1457 2356 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 40 Phospho (STY) _ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGR_ ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR ES(-93.62)PRPLQLPGAEGPAIS(93.62)DGEEGGGEPGAGGGAAGAAGAGR 0 0 1 1 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 960.459106445313 4 902.665679 3606.63361 31606.4934662296 1.6852 0.0015212 63468 57.29 63469 57.292 960.457198563236 67.772 1.3732 67.772 67.328 68.701 0 214 46 7 0.831835425116065 0.0118701980693682 0.207943762240349 1.2939E-18 1 15895 230.62 214.44 2 92178000 12104 18123 9124.4 15549 17178 10668 13338 15099 21537 75164 11442 17105 9450.4 16044 16911 11108 13986 17238 20903 71125 1 1 1 1 1 1 1 1 1 1 1319 1273 1161 1222 1458 1458 2256 ESPSPAPKPR 10 Phospho (STY) _ES(ph)PSPAPKPR_ ES(0.99)PS(0.01)PAPKPR ES(19.99)PS(-19.99)PAPKPR 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 535.293029785156 3 382.516539 1144.52779 43404.0818775086 1.367 0.00052291 399400 152.78 399400 152.78 535.291696356288 31.595 0.55456 31.595 31.358 31.912 -3.5527E-15 31 18 2 0.803351701934349 0.00152327001183797 0.0190131784230128 1.2543E-06 1 7055 156.36 109.47 2 18714000 11104 11575 10989 10627 12618 11287 11305 10733 10722 1675.9 10507 10929 11090 10980 12690 11280 11554 10838 10604 1826.5 1 1 1 1 1 1 1 1 1 1 1320 1436 1162 1223 1459 1459 2627;2628 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 Phospho (STY) _ESQLAHIKDEPPPLS(ph)PAPLTPATPSSLDPFFSR_ ESQLAHIKDEPPPLS(0.996)PAPLT(0.004)PATPSSLDPFFSR ES(-68.07)QLAHIKDEPPPLS(24.52)PAPLT(-24.52)PAT(-59.17)PS(-71.59)S(-77.18)LDPFFS(-91.81)R 0 0 1 1 Q7Z6Z7 Q7Z6Z7 Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1021.53546142578 4 906.451184 3621.77563 31220.5851056463 1.6321 0.0014795 126410 114.58 126410 114.58 1021.28157435455 98.702 0.46058 98.702 98.546 99.006 -1.4211E-14 55 15 5 0.951231256919054 0.0102498064212258 0.160622434142527 7.8359E-08 1 22900 149.54 139.21 7 57780000 3177.9 4919.1 3965.5 3650.2 5005.6 3596.2 4550.9 5548 4393.7 89127 3010.1 4639.7 3959.6 3824.5 5011.7 3799.4 4649.9 8175 4341.9 84052 1 1 1 1 1 1 1 1 1 1 1321 1356 1163 1224 1460 1460 2465 ESSANNSVSPSESLR 15 Phospho (STY) _ESSANNSVS(ph)PSESLR_ ESSANNSVS(1)PSESLR ES(-172.8)S(-137.54)ANNS(-55.08)VS(55.08)PS(-66.62)ES(-136.11)LR 0 0 1 0 Q04726 Q04726 Q04726 TLE3 Transducin-like enhancer protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 936.930603027344 2 822.349063 1642.68357 31966.6703485712 1.3855 0.0011394 139330 114.58 139340 114.58 936.930081876449 40.615 0.58925 40.615 40.322 40.911 0 66 19 4 0.979560944662357 0.00179755858375175 0.0303149494589957 2.1234E-67 1 9207 421.22 367.83 6 101660000 11588 12879 11461 12560 17381 11401 18871 14891 13095 2578.5 10964 12165 11624 12897 17304 11528 18979 14879 13166 2772.6 1 1 1 1 1 1 1 1 1 1 1322 864 1164 1225 1461 1461 1402 ESSEEGKEGK 10 Phospho (STY) _ESS(ph)EEGKEGK_ ES(0.013)S(0.987)EEGKEGK ES(-18.67)S(18.67)EEGKEGK 0 0 1 1 Q3YEC7 Q3YEC7 Q3YEC7 RABL6 Rab-like protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.317810058594 3 387.155336 1158.44418 41071.4477453162 1.9401 0.00075111 591910 229.16 591910 229.16 616.317161675399 32.544 0.64113 32.544 32.356 32.997 0 49 21 4 0.455752490192889 0.00178847062098504 0.0210121804813269 0.0083149 1 7292 74.649 58.758 2 13709000 23625 20797 27375 19941 24550 27356 23993 24258 20866 5569.6 22369 19641 27314 20646 25070 27061 24364 24620 20722 5805.9 1 1 1 1 1 1 1 1 1 1 1323 1132 1165 1226 1462 1462 1974 ESSIIAPAPAEDVDTPPR 18 Phospho (STY) _ESSIIAPAPAEDVDT(ph)PPR_ ESSIIAPAPAEDVDT(1)PPR ES(-110.57)S(-110.98)IIAPAPAEDVDT(110.57)PPR 0 0 1 0 Q15910 Q15910 Q15910 EZH2 Histone-lysine N-methyltransferase EZH2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.358703613281 3 648.969861 1943.88775 35361.9104501886 1.6518 0.001072 117700 76.386 117710 76.388 725.35500873063 66.163 1.2925 66.163 65.515 66.807 0 125 43 4 0.983631435792171 0.00167037857279559 0.0210498045845185 2.6572E-05 1 15500 129.74 114.81 3 19050000 5687.9 5882.3 5858.7 6399.8 7129.1 6813.3 6889.6 7206.9 7851.1 7996.6 5382.8 5559.8 5904.7 6546.2 7157.1 6830.8 7050.8 7454.7 7705.9 7696.5 1 1 1 1 1 1 1 1 1 1 1324 1098 1166 1227 1463 1463 4580 ESSKVPR 7 Phospho (STY) _ESS(ph)KVPR_ ES(0.161)S(0.839)KVPR ES(-7.17)S(7.17)KVPR 0 0 1 1 Q9NYI0 Q9NYI0 Q9NYI0 PSD3 PH and SEC7 domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.8720703125 2 441.707675 881.400797 37972.0758458696 2.3309 0.0010296 518810 229.16 518810 229.16 670.870789310139 29.139 0.67482 29.139 28.695 29.37 3.5527E-15 52 22 3 0.928302617704178 0.00232400136746777 0.0606627274086806 0.023331 1 6480 63.184 19.205 2 24036000 20846 22752 19285 25656 19196 17365 12776 16304 25056 7961.1 19720 21509 19496 26032 19407 17777 13649 16635 24202 7873.7 1 1 1 1 1 1 1 1 1 1 1325 2073 1167 1228 1464 1464 3756 ESSLPKSFKR 10 Phospho (STY) _ESSLPKS(ph)FKR_ ES(0.001)S(0.004)LPKS(0.995)FKR ES(-29.47)S(-23.59)LPKS(23.59)FKR 0 0 1 2 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.375122070313 3 420.211227 1257.61185 38929.4649544921 0.86526 0.00036359 545350 229.16 545350 229.16 649.373873131268 51.859 0.43759 51.859 51.69 52.127 0 26 14 3 0.840277995197375 0.00101169974358128 0.00694000865352753 0.049786 1 12081 49.31 26.431 3 14103000 13634 14157 15188 15639 15855 13404 15235 15100 13132 4731.6 12907 13382 15211 15931 16040 13565 15480 15223 13047 4804.8 1 1 1 1 1 1 1 1 1 1 1326 2180 1168 1229 1465 1465 3929 ESSPLYSPTFSDSTSAVK 18 Phospho (STY) _ESS(ph)PLYSPTFSDSTSAVK_ ES(0.423)S(0.577)PLYSPTFSDSTSAVK ES(-1.36)S(1.36)PLY(-77.7)S(-67.89)PT(-93.43)FS(-147.31)DS(-170.12)T(-185.76)S(-190.78)AVK 0 0 1 0 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.736450195313 3 661.625871 1981.85578 34696.4998682191 2.2971 0.0015198 230910 152.78 230910 152.78 814.735289400817 74.972 0.52154 74.972 74.737 75.259 -1.4211E-14 72 17 5 0.972464648948188 0.0100515768364924 0.067273989491217 4.1108E-16 1 17592 231.42 201.29 9 44982000 5689.6 31867 5196.7 30876 5612.1 5589.4 7136.5 16488 34120 14424 5381.9 30098 5269.1 31357 5717.7 6895 7930 16551 32522 13964 1 1 1 1 1 1 1 1 1 1 1327 616 1169 1230 1466 1466 1011;1012 ESSPLYSPTFSDSTSAVK 18 Phospho (STY) _ESSPLYS(ph)PTFSDSTSAVK_ ES(0.006)S(0.005)PLYS(0.988)PT(0.001)FSDSTSAVK ES(-22.28)S(-23.15)PLY(-76.87)S(22.28)PT(-28.19)FS(-74.54)DS(-96.48)T(-95.76)S(-105.04)AVK 0 0 1 0 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.401306152344 3 661.625871 1981.85578 33904.2019659377 1.6288 0.0010777 230910 152.78 230910 152.78 814.401509061148 76.119 0.4987 76.119 75.86 76.359 0 30 16 3 0.87849997013241 0.00256194095564577 0.0488314071921438 1.4575E-06 2 17863 138.04 120.55 9 10451000 11347 26072 12530 26163 15915 13403 14901 19393 27429 30759 10742 24630 12589 26652 15948 14137 15559 20147 26533 29412 2 2 2 2 2 2 2 2 2 2 1328 616 1169 1230 1467;1468 1467 1011;1012 ESSPPREEAPPPPPPTEDSCAK 22 Phospho (STY) _ESS(ph)PPREEAPPPPPPTEDSCAK_ ES(0.041)S(0.959)PPREEAPPPPPPTEDSCAK ES(-13.65)S(13.65)PPREEAPPPPPPT(-97.86)EDS(-113.93)CAK 0 0 1 1 Q9UPW6 Q9UPW6 Q9UPW6 SATB2 DNA-binding protein SATB2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 972.132446289063 3 819.020955 2454.04103 32337.8766065982 1.6332 0.0013376 186530 152.78 186540 152.78 972.130866699892 44.214 0.98074 44.214 43.757 44.738 0 100 33 4 0.97615968762714 0.00204928396204206 0.0291323510909403 1.2734E-08 2 10097 169.95 146.77 4 23907000 27733 13213 29234 15629 5791.8 31757 7139.5 17784 13780 5889.4 26248 12496 29066 16159 7287 30948 7384.5 18558 13315 5957.1 2 2 2 2 2 2 2 2 2 2 1329 2222 1170 1231 1469;1470 1469 4023 ESTAEKDEL 9 Unmodified _ESTAEKDEL_ 0 0 0 1 P14625;Q58FF3 P14625 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.401062011719 2 511.237844 1020.46113 36050.5370237526 1.0509 0.00053725 448250 229.16 448250 229.16 740.901719600822 47.467 0.29956 47.467 47.356 47.656 0 23 12 3 0.968332570580498 0.000630174343798317 0.00368023312753467 0.0023953 1 10984 94.309 62.937 1 36225000 38172 30739 40304 31005 35624 40379 35735 36616 34815 14369 36129 29040 40404 31969 36429 40035 36345 37307 34391 14378 1 1 1 1 1 1 1 1 1 1 1330 389 1171 1232 1471 1471 ESTLEAIGYICQDIDPEQLQDK 22 Unmodified _ESTLEAIGYICQDIDPEQLQDK_ 0 0 0 0 Q14974 Q14974 Q14974 KPNB1 Importin subunit beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1008.85034179688 3 855.739014 2564.19521 30840.7667493362 1.4532 0.0012435 178530 152.78 178530 152.78 1008.84904200968 99.851 0.25523 99.851 99.665 99.92 0 20 8 5 0.776195171514408 0.00221065146159602 0.0596163255120378 6.2564E-08 1 23256 149.73 130.68 1 261740000 15864 17897 16332 21918 18903 19391 18919 23879 23573 102990 15013 16930 16450 22219 19036 19800 19385 26882 23062 97529 1 1 1 1 1 1 1 1 1 1 1331 1034 1172 1233 1472 1472 ESTSSKSPPR 10 Phospho (STY) _ESTSSKS(ph)PPR_ ES(0.041)T(0.041)S(0.041)S(0.177)KS(0.701)PPR ES(-12.34)T(-12.34)S(-12.34)S(-5.98)KS(5.98)PPR 0 0 1 1 P78347 P78347 P78347 GTF2I General transcription factor II-I MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.614318847656 3 385.83957 1154.49688 42125.4423066627 1.665 0.00064241 395960 152.78 395960 152.78 538.615228241769 28.02 1.5189 28.02 27.09 28.609 0 156 52 4 0.847666471539442 0.00270554968709328 0.0215290137617494 0.024508 2 6100 54.023 42.872 5 350140000 20601 18544 20056 17782 20230 20609 20215 20628 20532 4666.1 19492 17513 20229 18350 20519 20540 20587 20831 20246 4871.1 2 2 2 2 2 2 2 2 2 2 1332 798 1173 1234 1473;1474 1473 1273 ESVPEFPLSPPK 12 Phospho (STY) _ESVPEFPLS(ph)PPK_ ESVPEFPLS(1)PPK ES(-120.27)VPEFPLS(120.27)PPK 0 0 1 0 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.334777832031 3 469.558293 1405.65305 38594.6022294031 1.4518 0.0006817 325360 152.78 325360 152.78 622.334081232868 86.838 2.1728 86.838 85.618 87.791 0 293 74 5 0.981442035250143 0.0600764730248394 1 2.2031E-07 2 20231 155.57 139.35 2 464250000 57131 93987 62573 86792 57158 56748 57641 70969 96202 7723 54081 88745 62629 89071 58367 58416 59706 70869 93287 8914.6 2 2 2 2 2 2 2 2 2 2 1333 411 1174 1235 1475;1476 1476 663 ESVSPEDSEK 10 Phospho (STY) _ESVS(ph)PEDSEK_ ESVS(1)PEDSEK ES(-56.97)VS(56.97)PEDS(-63.73)EK 0 0 1 0 P35251 P35251 P35251 RFC1 Replication factor C subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.895202636719 2 593.729198 1185.44384 33329.4714450453 2.2437 0.0013321 385970 229.16 385980 229.16 822.892294242774 40.003 1.2923 40.003 39.452 40.744 0 83 43 4 0.918801696931677 0.00154141854270681 0.0346689408607909 5.48E-21 2 9050 274.71 212.44 3 116250000 59409 51426 57084 47712 45052 56539 46403 54343 52255 8530.4 56207 48559 57469 49358 46454 56266 47330 54852 51312 9290.1 2 2 2 2 2 2 2 2 2 2 1334 544 1175 1236 1477;1478 1478 878 ESVSTEDLSPPSPPLPK 17 Phospho (STY) _ESVSTEDLSPPS(ph)PPLPK_ ESVSTEDLS(0.006)PPS(0.994)PPLPK ES(-70.75)VS(-62.42)T(-53.19)EDLS(-22.31)PPS(22.31)PPLPK 0 0 1 0 Q13127 Q13127 Q13127 REST RE1-silencing transcription factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.40478515625 3 620.627323 1858.86014 35956.1609077608 1.8515 0.0011491 246160 152.77 246160 152.78 773.40222769166 76.519 0.87643 76.519 76.065 76.941 0 98 29 4 0.985251386988681 0.00258523163253694 0.106782734147612 2.6645E-05 1 17919 128.74 112.08 5 15572000 6932.2 5523.9 6924 4620 5551.3 7186.6 5518.9 6423.2 4490.9 8875.9 6559.6 5213 6955.7 4840.1 5713.1 7096.1 5591.2 6739.9 4474.8 8506.3 1 1 1 1 1 1 1 1 1 1 1335 925 1176 1237 1479 1479 1525 ETCSTLAESPR 11 Phospho (STY) _ETCSTLAES(ph)PR_ ETCSTLAES(1)PR ET(-119.32)CS(-102)T(-93.96)LAES(93.96)PR 0 0 1 0 Q6P2E9 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.351135253906 2 665.770874 1329.5272 35358.8758332922 1.2011 0.00079965 172100 114.58 172100 114.58 780.350010070461 36.649 0.64328 36.649 36.372 37.015 0 44 21 3 0.972997989251815 0.00126405036154627 0.0159881483665586 4.5681E-07 1 8256 163.93 121.3 4 37488000 20152 25463 19890 24703 13567 21159 14500 20678 26598 10065 19068 24050 19968 25353 14166 21380 15046 21063 25731 9955.6 1 1 1 1 1 1 1 1 1 1 1336 1258 1177 1238 1480 1480 2232 ETDPVKSPPLPEHQK 15 Phospho (STY) _ETDPVKS(ph)PPLPEHQK_ ET(0.026)DPVKS(0.974)PPLPEHQK ET(-15.68)DPVKS(15.68)PPLPEHQK 0 0 1 1 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.090087890625 4 446.217196 1780.83968 40530.2606366535 1.3126 0.00058569 385180 171.87 385180 171.87 618.089311523075 52.781 0.54781 52.781 52.323 52.87 0 48 18 3 0.581334732122492 0.000986660628404909 0.0100458355831526 0.00020132 1 12281 102.43 68.156 2 13339000 12898 8768.6 10605 10754 8519.3 12673 8661 9992.2 10406 2368.9 12196 8294.7 10785 10952 8772.2 12588 8857.2 10198 10194 2461.9 1 1 1 1 1 1 1 1 1 1 1337 1699 1178 1239 1481 1481 3121 ETEAAPTSPPIVPLK 15 Phospho (STY) _ETEAAPTS(ph)PPIVPLK_ ETEAAPT(0.135)S(0.864)PPIVPLK ET(-41.11)EAAPT(-8.05)S(8.05)PPIVPLK 0 0 1 0 Q7Z3B3 Q7Z3B3 Q7Z3B3 KANSL1 KAT8 regulatory NSL complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.719482421875 3 543.942695 1628.80625 37360.6699304204 2.0186 0.001098 280870 152.78 280870 152.78 696.718533177181 78.04 0.5382 78.04 77.78 78.318 0 56 18 4 0.912850307098033 0.00335173876044657 0.0466997697933641 6.9002E-05 1 18304 123.36 85.812 3 19294000 9356.3 10327 8178.1 9951.6 10099 8931.1 8141.5 8741.6 12152 6852.7 8849 9753.8 8322.4 10225 10112 9008.2 8491.2 8982.3 11820 6654.9 1 1 1 1 1 1 1 1 1 1 1338 1330 1179 1240 1482 1482 2391 ETEITPEDGED 11 Unmodified _ETEITPEDGED_ 0 0 0 0 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.336059570313 2 617.751512 1233.48847 36429.0284970944 0.88212 0.00054493 185480 114.58 185480 114.58 732.334407130638 45.451 0.3536 45.451 45.407 45.761 0 19 11 2 0.701652640516416 0.000383122254454896 0.00154039594950786 2.7003E-06 1 10478 153.73 148.57 1 30732000 20659 12679 20417 11967 13927 20455 13590 17243 13335 5908.3 19548 11973 20493 12467 14512 20095 13843 17599 13168 5962.5 1 1 1 1 1 1 1 1 1 1 1339 2248 1180 1241 1483 1483 ETENDDLTNVIQK 13 Unmodified _ETENDDLTNVIQK_ 0 0 0 0 O95373 O95373 O95373 IPO7 Importin-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.691223144531 3 506.914254 1517.72093 38008.0422851515 2.2053 0.0011179 301380 152.78 301390 152.78 659.689764570399 66.945 0.46009 66.945 66.72 67.18 0 28 15 2 0.678782435139841 0.00489780336944168 0.102978666351825 1.3614E-10 1 15716 182.07 156.62 1 31316000 11464 11550 11279 11473 16645 11615 18022 14150 13572 6150.2 10847 10910 11437 11787 16590 11679 18156 14280 13581 6118.6 1 1 1 1 1 1 1 1 1 1 1340 243 1181 1242 1484 1484 ETEPLVSPHQDK 12 Phospho (STY) _ETEPLVS(ph)PHQDK_ ETEPLVS(1)PHQDK ET(-57.52)EPLVS(57.52)PHQDK 0 0 1 0 Q9BYW2 Q9BYW2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.331237792969 3 487.22034 1458.63919 40248.3956223737 1.5148 0.00073805 313570 152.78 313570 152.78 639.996134618693 47.684 0.52703 47.684 47.511 48.038 7.1054E-15 44 17 3 0.833303081900346 0.00153505964354294 0.0328198841353912 0.0001439 1 11085 103.39 76.052 2 17690000 14883 18440 15631 19748 17711 18830 17960 16923 20392 7839.5 14086 17427 15722 20182 17856 18906 18337 17285 20018 7773.5 1 1 1 1 1 1 1 1 1 1 1341 1872 1182 1243 1485 1485 3407 ETERASPIKMDLAPSK 16 Phospho (STY) _ETERAS(ph)PIKMDLAPSK_ ET(0.158)ERAS(0.842)PIKMDLAPSK ET(-7.27)ERAS(7.27)PIKMDLAPS(-78.42)K 0 0 1 2 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.1015625 4 463.977318 1851.88016 38988.5076979955 1.5972 0.00074108 370430 171.87 370430 171.87 636.100453129315 62.244 0.69468 62.244 61.92 62.615 -7.1054E-15 108 23 7 0.983372134724928 0.00901883989821824 0.129074473603454 0.00011395 1 14584 106.63 80.483 3 172140000 16739 38371 16876 40947 19408 19096 18600 27641 42449 5214.9 15840 36262 17015 41535 19557 20233 19625 27552 40873 5550.2 1 1 1 1 1 1 1 1 1 1 1342 491 1183 1244 1486 1486 804 ETESAPGSPR 10 Phospho (STY) _ETESAPGS(ph)PR_ ETESAPGS(1)PR ET(-125.98)ES(-77.26)APGS(77.26)PR 0 0 1 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.309265136719 2 555.726793 1109.43903 38577.1243981835 1.8461 0.0010259 206180 114.58 206190 114.58 670.308324977764 26.24 0.57776 26.24 26.045 26.623 0 51 19 4 0.997200643942494 0.00355143127762044 0.104011780600667 1.9221E-09 1 5834 180.47 126.9 3 29118000 9681.3 12377 9336.6 10955 10133 10756 9270.5 10159 12872 3303.2 9159.7 11684 9429.4 11332 10227 10789 9576.6 10313 12548 3345.5 1 1 1 1 1 1 1 1 1 1 1343 1273 1184 1245 1487 1487 2257 ETETSEPK 8 Unmodified _ETETSEPK_ 0 0 0 0 REV__Q9H201 REV__Q9H201 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 460.254333496094 3 307.478429 919.413456 46481.8791610832 0.017095 5.2562E-06 496870 152.78 496870 152.78 460.254532300904 39.591 0.46917 39.591 39.364 39.833 0 37 15 3 0.883365335547134 0.00216356041839805 0.0299242853643129 0.049627 1 8998 39.148 20.836 1 13235000 17345 13442 18847 14351 10945 20909 11921 15095 15703 2740.1 16418 12703 18797 14785 11591 20598 12191 15449 15333 2929.4 1 1 1 1 1 1 1 1 1 1 + 1344 2347 1185 1246 1488 1488 ETGEPYRLSPEPTPLAEPILEVEVTLSK 28 Phospho (STY) _ETGEPYRLS(ph)PEPTPLAEPILEVEVTLSK_ ETGEPYRLS(0.948)PEPT(0.052)PLAEPILEVEVTLSK ET(-45.57)GEPY(-126.46)RLS(12.6)PEPT(-12.6)PLAEPILEVEVT(-171.83)LS(-204.27)K 0 0 1 1 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1211.97814941406 3 1058.86677 3173.57849 28108.3632829377 1.4083 0.0014912 144280 152.78 144280 152.78 1211.97680594626 101.86 0.19785 101.86 101.79 101.99 0 24 6 5 0.961670180289261 0.00899873752803728 0.2565931422968 6.9698E-44 1 23989 330.95 303.53 6 126050000 7524.6 10077 7613.5 10317 4510.5 9635.7 5833.6 15027 11804 311330 7120.5 9521.2 7625.8 10568 4784.8 10343 6038 24246 11393 293500 1 1 1 1 1 1 1 1 1 1 1345 861 1186 1247 1489 1489 1393 ETIEQEK 7 Unmodified _ETIEQEK_ 0 0 0 0 P62328;CON__P21752;P63313 P62328;P63313 P62328 TMSB4X;TMSB10 Thymosin beta-4;Hematopoietic system regulatory peptide;Thymosin beta-10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.8828125 2 438.71909 875.423627 38334.6829867207 2.1067 0.00092425 522350 229.16 522350 229.16 667.881752812215 39.997 0.40904 39.997 39.772 40.181 -7.1054E-15 34 13 3 0.822067401709113 0.00111266148896972 0.0177001264218607 0.024289 1 9066 92.439 37.89 1 33949000 44230 32457 43426 32297 34620 41735 37291 37601 33744 5963.2 41849 30660 43671 33323 35686 41371 37734 38057 33446 6485.3 1 1 1 1 1 1 1 1 1 1 1346 763;784 1187 1248 1490 1490 ETINNLDTSSSDFTILQEIEEPSLEPENEK 30 Phospho (STY) _ETINNLDTSS(ph)SDFTILQEIEEPSLEPENEK_ ETINNLDT(0.004)S(0.05)S(0.903)S(0.042)DFTILQEIEEPSLEPENEK ET(-71.36)INNLDT(-23.19)S(-12.53)S(12.53)S(-13.35)DFT(-64.88)ILQEIEEPS(-149.72)LEPENEK 0 0 1 0 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 991.232299804688 4 876.147459 3500.56073 31530.7196275107 1.3723 0.0012023 130780 114.58 130780 114.58 990.97838721499 101.06 0.34742 101.06 100.93 101.27 0 26 11 4 0.901359219602632 0.00725497383861965 0.0816808751652977 8.1833E-18 1 23705 219.16 198.07 7 65473000 3133.2 4712.4 3886.3 3806.2 3276.8 3883.7 6013.3 6221.7 3201.8 107390 2967.6 4446.5 3867.6 3964.7 3397.4 4120.9 5912.6 9386 3278.4 101260 1 1 1 1 1 1 1 1 1 1 1347 1076 1188 1249 1491 1491 1862 ETPHSPGVEDAPIAK 15 Phospho (STY) _ETPHS(ph)PGVEDAPIAK_ ETPHS(1)PGVEDAPIAK ET(-46.9)PHS(46.9)PGVEDAPIAK 0 0 1 0 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.360107421875 3 543.250299 1626.72907 37482.4306218379 0.9659 0.00052473 281220 152.78 281230 152.78 696.025453033636 52.056 0.86048 52.056 51.747 52.607 -7.1054E-15 106 29 6 0.957420271092466 0.00825089792637668 0.0292738194805369 6.6993E-16 2 12072 227 200.19 2 272140000 71876 96429 73359 99553 99249 79485 98728 91849 113130 39459 68019 91111 74099 101700 99195 80796 100920 92841 111020 39281 2 2 2 2 2 2 2 2 2 2 1348 2144 1189 1250 1492;1493 1492 3858 ETPHSPPGGVK 11 Phospho (STY) _ETPHS(ph)PPGGVK_ ET(0.01)PHS(0.99)PPGGVK ET(-19.87)PHS(19.87)PPGGVK 0 0 1 0 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.959350585938 3 395.848177 1184.5227 42050.21532677 0.62798 0.00024858 385940 152.78 385950 152.78 548.95794847615 37.263 0.51304 37.263 36.78 37.293 0 28 17 2 0.748900000838161 0.00109044499743089 0.00766073908438106 0.018333 1 8396 59.294 34.44 2 48763000 13436 8404.6 15720 8060.7 11620 14434 13667 13403 8850.2 2123.3 12722 7937.6 15651 8399.9 12059 14174 13682 13548 8936.8 2309.6 1 1 1 1 1 1 1 1 1 1 1349 1243 1190 1251 1494 1494 2192 ETPHSPPGGVK 11 Phospho (STY) _ETPHS(ph)PPGGVK_ ETPHS(1)PPGGVK ET(-54.95)PHS(54.95)PPGGVK 0 0 1 0 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.624694824219 3 395.848177 1184.5227 42030.4477071598 1.678 0.00066424 385940 152.78 385950 152.78 548.623673873956 38.061 1.3687 38.061 37.241 38.61 0 169 50 5 0.997080668582248 0.026672263245582 0.386420259644828 2.9567E-07 1 8596 162.94 130.45 2 215090000 138100 34413 146030 41181 14307 140060 13982 63632 43565 2093.3 130710 32547 144970 43459 22319 135020 15058 66852 41730 3443.8 1 1 1 1 1 1 1 1 1 1 1350 1243 1190 1251 1495 1495 2192 ETPSQENGPTAK 12 Phospho (STY) _ETPS(ph)QENGPTAK_ ET(0.014)PS(0.986)QENGPTAK ET(-18.54)PS(18.54)QENGPT(-109.94)AK 0 0 1 0 O15355 O15355 O15355 PPM1G Protein phosphatase 1G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.633117675781 3 446.85729 1337.55004 39024.4857432355 1.493 0.00066714 341890 152.78 341890 152.78 599.632792580492 36.15 0.4916 36.15 35.908 36.4 7.1054E-15 51 16 4 0.864916124630477 0.00431050409288103 0.0347201380202084 3.9166E-07 1 8122 139.66 119 3 49272000 12500 15112 15846 15867 38202 13578 38570 23932 15666 3649 11841 14280 16038 16209 37431 13849 38616 23714 16429 3989.8 1 1 1 1 1 1 1 1 1 1 1351 89 1191 1252 1496 1496 154 ETQSPEQVK 9 Phospho (STY) _ETQS(ph)PEQVK_ ETQS(1)PEQVK ET(-67.72)QS(67.72)PEQVK 0 0 1 0 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.407409667969 2 563.244818 1124.47508 35303.8693087558 2.0763 0.0011694 406860 229.16 406860 229.16 792.40804923623 37.743 1.0738 37.743 37.421 38.495 0 124 37 5 0.923157258565881 0.00243804444922396 0.0118756127147934 5.4096E-10 3 8494 209.77 142.22 2 499650000 113310 112600 112020 108840 95205 104120 97630 109980 118600 20272 107210 106350 112670 111900 97661 104680 99837 110710 116130 21634 3 3 3 3 3 3 3 3 3 3 1352 2072 1192 1253 1497;1498;1499 1498 3746 ETQSPEQVKSEK 12 Phospho (STY) _ETQS(ph)PEQVKSEK_ ET(0.002)QS(0.998)PEQVKSEK ET(-26.76)QS(26.76)PEQVKS(-80.32)EK 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.720153808594 3 490.555499 1468.64467 37093.5129585082 2.5695 0.0012605 467150 229.16 467150 229.16 719.718500272831 41.971 0.94037 41.971 41.484 42.425 0 123 32 5 0.987893922372092 0.00218827183971051 0.0186543647644702 2.6612E-07 1 9506 151.04 131.33 3 195330000 22418 21537 27117 20485 21909 22355 21884 22338 20122 6637.6 21230 20339 26972 21128 22539 22336 22229 22607 19929 6767.1 1 1 1 1 1 1 1 1 1 1 1353 2072 1193 1254 1500 1500 3746 ETSFGSSENITMTSLSK 17 Oxidation (M),Phospho (STY) _ETSFGS(ph)SENITM(ox)TSLSK_ ETSFGSSENITM(1)TSLSK ET(0.003)S(0.004)FGS(0.84)S(0.154)ENITMTSLSK ETSFGSSENITM(133.16)TSLSK ET(-25.03)S(-23.79)FGS(7.36)S(-7.36)ENIT(-71.98)MT(-95.58)S(-101.74)LS(-113.11)K 0 1 1 0 Q9UMZ2 Q9UMZ2 Q9UMZ2 SYNRG Synergin gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.050109863281 3 638.939461 1913.79655 35484.4529334347 1.867 0.0011929 239110 152.78 239110 152.78 791.714899187501 70.707 0.37563 70.707 70.538 70.914 0 29 12 3 0.822478759093036 0.00197372857924054 0.0209810338336474 1.5666E-05 1 16592 133.16 114.79 8 16342000 10815 10456 10522 11174 13159 9907.6 9901.9 12118 11131 31883 10232 9881.5 10638 11409 13153 10075 10269 13031 10931 30302 1 1 1 1 1 1 1 1 1 1 1354 2200 1194 1255 1501 1501 231 3984;3985 ETSFGSSENITMTSLSK 17 Phospho (STY) _ETSFGSS(ph)ENITMTSLSK_ ET(0.043)S(0.082)FGS(0.332)S(0.543)ENITMTSLSK ET(-11.02)S(-8.21)FGS(-2.14)S(2.14)ENIT(-69.59)MT(-100.84)S(-109.56)LS(-115.81)K 0 0 1 0 Q9UMZ2 Q9UMZ2 Q9UMZ2 SYNRG Synergin gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.71875 3 633.607823 1897.80164 35639.3092175194 2.2382 0.0014182 241120 152.78 241120 152.78 786.7175599447 81.662 0.63485 81.662 81.363 81.998 0 77 21 5 0.967612298812297 0.00694252082352269 0.0633702742989399 4.0205E-05 1 19100 123.6 97.714 8 43028000 21383 23574 22483 22991 20208 21008 22921 22117 25530 14192 20238 22266 22553 23610 20683 21187 23273 22569 25080 13875 1 1 1 1 1 1 1 1 1 1 1355 2200 1194 1256 1502 1502 3984;3985 ETSMVHELNR 10 Phospho (STY) _ETS(ph)MVHELNR_ ET(0.044)S(0.956)MVHELNR ET(-13.42)S(13.42)MVHELNR 0 0 1 0 P61619 P61619 P61619 SEC61A1 Protein transport protein Sec61 subunit alpha isoform 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.858825683594 2 648.276127 1294.5377 35630.8745398202 1.7338 0.001124 176750 114.58 176750 114.58 762.857327308518 48.964 0.48656 48.964 48.769 49.256 0 32 16 3 0.421040381647861 0.000985394500436028 0.0150089057663404 0.0056038 1 11370 91.233 71.471 2 10763000 19277 32330 20727 36271 20444 19084 21350 25074 35665 9790.5 18247 30564 20786 36725 20789 19990 22081 25214 34583 9799.2 1 1 1 1 1 1 1 1 1 1 1356 751 1195 1257 1503 1503 1237 ETSPQVK 7 Phospho (STY) _ETS(ph)PQVK_ ET(0.095)S(0.905)PQVK ET(-9.78)S(9.78)PQVK 0 0 1 0 Q9GZR2 Q9GZR2 Q9GZR2 REXO4 RNA exonuclease 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.85693359375 2 434.694233 867.373913 42183.7345969832 1.6867 0.00073318 527180 229.16 527180 229.16 663.856201825527 37.426 0.26781 37.426 37.27 37.538 0 19 12 3 0.811140509638474 0.000155822144875752 0.000659383884099688 0.0051098 1 8441 96.665 53.223 2 23276000 26705 42039 25803 44697 20515 25802 20277 32792 45864 7249.5 25266 39728 25969 45427 21152 26807 21353 32840 44169 7585.2 1 1 1 1 1 1 1 1 1 1 1357 1891 1196 1258 1504 1504 3444 ETSTNGPVSQEAFSVTGPAAPGCVGVPGALPPPSPK 36 Phospho (STY) _ETSTNGPVSQEAFSVTGPAAPGCVGVPGALPPPS(ph)PK_ ETSTNGPVSQEAFSVT(0.007)GPAAPGCVGVPGALPPPS(0.993)PK ET(-81.07)S(-81.07)T(-81.2)NGPVS(-75.57)QEAFS(-40.35)VT(-21.77)GPAAPGCVGVPGALPPPS(21.77)PK 0 0 1 0 Q86UK7 Q86UK7 Q86UK7 ZNF598 Zinc finger protein 598 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1001.0078125 4 885.923368 3539.66436 31682.6374575565 1.1589 0.0010267 129340 114.58 129340 114.58 1000.75398521297 87.792 0.8164 87.792 87.408 88.225 -1.4211E-14 56 27 3 0.85258168524722 0.00164429758540551 0.0252065150263175 0.00022501 1 20432 100.19 82.626 7 11471000 2209 2030 2968.7 2695.3 2297.7 2214.9 1855.6 3106 3047.7 22086 2093.1 1921.5 2936.6 2719.2 2366.2 2294.3 1942.7 3746.6 2956.6 20869 1 1 1 1 1 1 1 1 1 1 1358 1371 1197 1259 1505 1505 2485 ETTDTDTADQVIASFK 16 Unmodified _ETTDTDTADQVIASFK_ 0 0 0 0 O43707 O43707 O43707 ACTN4 Alpha-actinin-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.050964355469 3 581.27574 1740.80539 35886.0571192508 2.008 0.0011672 262830 152.78 262830 152.78 734.050933228411 87.31 0.58794 87.31 87.028 87.616 0 61 19 4 0.971259802965821 0.00141895445114357 0.0131291979655115 6.2113E-07 1 20356 142.1 110.91 1 21789000 8329.2 9098.2 8912.6 9297.2 9283.1 8634.4 8378.7 8409.7 8412 9601 7883.7 8595.9 8943.8 9523.3 9385.8 8699.6 8573.1 8733.6 8298.7 9235.1 1 1 1 1 1 1 1 1 1 1 1359 122 1198 1260 1506 1506 ETVNSPAIYK 10 Phospho (STY) _ETVNS(ph)PAIYK_ ET(0.003)VNS(0.997)PAIYK ET(-24.97)VNS(24.97)PAIY(-48.59)K 0 0 1 0 Q9Y3A2 Q9Y3A2 Q9Y3A2 UTP11L Probable U3 small nucleolar RNA-associated protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.446411132813 2 601.278661 1200.54277 34821.4690515082 2.3415 0.0014079 381130 229.16 381130 229.17 830.443894059444 58.37 0.35114 58.37 58.17 58.521 0 22 11 3 0.78686871581352 0.00055252504017845 0.0294018956644348 0.00019166 1 13672 122.97 85.244 3 11512000 20553 29163 21808 30093 17371 21154 16125 25072 31334 18974 19453 27554 21831 30698 17887 21688 16891 25569 30272 18447 1 1 1 1 1 1 1 1 1 1 1360 2265 1199 1261 1507 1507 4193 ETVQTTQSPTPVEK 14 Phospho (STY) _ETVQTTQS(ph)PTPVEK_ ETVQTTQS(0.999)PTPVEK ET(-66.27)VQT(-39.41)T(-33.53)QS(33.53)PT(-40.82)PVEK 0 0 1 0 Q9UPN6 Q9UPN6 Q9UPN6 SCAF8 Protein SCAF8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.029907226563 3 542.253709 1623.7393 36383.1031410973 0.87033 0.00047194 281740 152.78 281740 152.78 695.029404105244 47.138 0.34961 47.138 46.917 47.267 7.1054E-15 35 11 4 0.975027882505758 0.0016029203112172 0.00469172621285662 2.4544E-07 1 10916 165.66 142.18 5 50381000 23927 27701 26080 26786 18155 21916 21079 25975 27136 6646.8 22649 26163 26046 27481 18939 22248 21482 26098 26518 6859.9 1 1 1 1 1 1 1 1 1 1 1361 2213 1200 1262 1508 1508 4007 ETYVEQEQGENANDRNDR 18 Unmodified _ETYVEQEQGENANDRNDR_ 0 0 0 1 Q9Y2L1 Q9Y2L1 Q9Y2L1 DIS3 Exosome complex exonuclease RRP44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.369873046875 3 722.980937 2165.92098 36107.9020018138 1.6738 0.0012102 105660 76.387 105660 76.388 799.702139869335 32.203 0.38532 32.203 32.027 32.413 0 34 12 4 0.970511779248496 0.00156806001241338 0.0219484390346535 6.8613E-17 1 7202 249.41 208.03 1 10084000 7807.6 7164.7 8735.5 5943.8 11377 8246.1 10965 8704.9 7101.8 1490.8 7391.4 6761.3 8774.4 6214.4 11380 8171.2 11076 8758.7 7171.3 1605.2 1 1 1 1 1 1 1 1 1 1 1362 2253 1201 1263 1509 1509 EVDGLLTSEPMGSPVSSK 18 Oxidation (M),Phospho (STY) _EVDGLLTSEPM(ox)GS(ph)PVSSK_ EVDGLLTSEPM(1)GSPVSSK EVDGLLTSEPMGS(0.999)PVSSK EVDGLLTSEPM(110.33)GSPVSSK EVDGLLT(-43.68)S(-38.18)EPMGS(35.29)PVS(-35.29)S(-39.18)K 0 1 1 0 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.402709960938 3 643.623473 1927.84859 34882.835697318 2.44 0.0015704 237370 152.78 237370 152.78 796.733293611819 74.161 0.90263 74.161 73.895 74.797 0 98 30 5 0.988744797126897 0.00189563474187455 0.0294452717675541 5.5296E-05 1 17386 110.33 93.397 5 32144000 6746.2 10064 7449.5 10183 10735 6785.8 11092 10559 11064 14872 6386.3 9507.6 7501.7 10393 10704 7028.7 11273 10893 10918 14248 1 1 1 1 1 1 1 1 1 1 1363 1576 1202 1264 1510 1510 186 2892 EVDGLLTSEPMGSPVSSK 18 Phospho (STY) _EVDGLLTSEPMGS(ph)PVSSK_ EVDGLLTSEPMGS(0.993)PVS(0.005)S(0.002)K EVDGLLT(-50.94)S(-38.23)EPMGS(23.11)PVS(-23.11)S(-27.93)K 0 0 1 0 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.403686523438 3 638.291835 1911.85368 35444.9538343533 1.9011 0.0012135 239350 152.78 239350 152.78 791.401612817956 83.384 0.89921 83.384 83.086 83.985 0 108 30 6 0.652683650284412 0.0189436847809691 0.28397627791611 3.2218E-05 1 19503 121.48 98.31 5 59020000 17023 27857 16302 26654 17760 18175 18899 22672 25226 55054 16106 26309 16476 27305 17959 18757 19356 24227 24622 52365 1 1 1 1 1 1 1 1 1 1 1364 1576 1202 1265 1511 1511 2892 EVDYSDSLTEK 11 Phospho (STY) _EVDYSDS(ph)LTEK_ EVDYSDS(0.5)LT(0.5)EK EVDY(-128.58)S(-34.05)DS(0)LT(0)EK 0 0 1 0 P51532 P51532 P51532 SMARCA4 Transcription activator BRG1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.438110351563 2 683.276513 1364.53847 32810.0025027059 1.7746 0.0012126 335390 229.16 335390 229.16 912.439072436193 60.819 0.9611 60.819 60.459 61.42 0 76 32 4 0.981722208879051 0.00106378121018739 0.033973291596595 4.1633E-21 2 14228 252.44 183.1 4 26509000 31929 29325 32157 26985 52235 30398 53817 36305 28585 43029 30214 27689 32616 27905 51822 30472 54014 37484 29275 41357 2 2 2 2 2 2 2 2 2 2 1365 679 1203 1266 1512;1513 1512 1137;4478 EVEDKESEGEEEDEDEDLSK 20 Phospho (STY) _EVEDKES(ph)EGEEEDEDEDLSK_ EVEDKES(1)EGEEEDEDEDLSK EVEDKES(136.95)EGEEEDEDEDLS(-136.95)K 0 0 1 1 O95218 O95218 O95218 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1036.80517578125 3 807.30592 2418.89593 31422.0134493225 1.4008 0.0011308 283860 229.16 283860 229.16 1036.8031562225 53.421 0.74059 53.421 53.118 53.859 -7.1054E-15 79 24 5 0.981167849911814 0.00256271045040385 0.0196270338709879 2.1709E-31 1 12451 290.25 251.38 2 30363000 22132 25292 24973 24631 25508 24848 25336 24309 28398 8256 20953 23889 24989 25334 25855 24905 25882 24653 27890 8336.6 1 1 1 1 1 1 1 1 1 1 1366 235 1204 1267 1514 1514 405 EVEEDEYK 8 Unmodified _EVEEDEYK_ 0 0 0 0 P14625 P14625 P14625 HSP90B1 Endoplasmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.88916015625 2 520.724569 1039.43459 36020.6844339754 2.1961 0.0011435 440080 229.16 440090 229.16 749.887451072484 45.123 0.46409 45.123 44.859 45.323 0 51 15 4 0.915971668027842 0.00263729385800803 0.0668050908814904 5.2861E-05 1 10352 157.86 110.79 1 55208000 52923 41020 52957 39108 51372 49086 55952 48525 39918 6458.3 50079 38740 53312 40432 52275 48761 56295 48890 40067 7204.3 1 1 1 1 1 1 1 1 1 1 1367 389 1205 1268 1515 1515 EVEETDEMDQVELVDFDPNQER 22 Unmodified _EVEETDEMDQVELVDFDPNQER_ 0 0 0 0 P31689 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 966.108581542969 3 889.385188 2665.13374 31800.5056606564 1.5391 0.0013688 85888 76.387 85889 76.388 966.106392881219 86.829 0.46558 86.829 86.619 87.085 -1.4211E-14 44 15 4 0.983693593767168 0.00231981619609905 0.0247670220038479 3.6282E-12 1 20266 202.53 178.52 1 15215000 2887.7 4974.8 3685.4 4348.2 4207.2 4183.6 3458.4 5158.4 4558.4 18460 2735.5 4696 3670.1 4500.2 4229.2 4247.7 3586.4 5692.7 4451.1 17502 1 1 1 1 1 1 1 1 1 1 1368 521 1206 1269 1516 1516 EVELVSE 7 Phospho (STY) _EVELVS(ph)E_ EVELVS(1)E EVELVS(155.82)E 0 0 1 0 O60832 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.268188476563 2 442.686074 883.357595 41552.7467517918 1.2551 0.00055562 258830 114.58 258830 114.58 557.267798506806 64.549 3.5259 64.549 63.92 67.446 0 372 120 5 0.923895914263229 0.00843985448751291 0.427211210425747 3.0176E-05 3 15341 155.82 150.96 1 328010000 108490 155020 107510 161440 90300 113200 105260 127190 176080 11848 102660 146480 108130 164590 92931 115820 108370 127400 170740 14100 3 3 3 3 3 3 3 3 3 3 1369 159 1207 1270 1517;1518;1519 1518 271 EVENSEDPK 9 Unmodified _EVENSEDPK_ 0 0 0 0 P18206 P18206 P18206 VCL Vinculin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.898864746094 2 523.735468 1045.45638 36135.1313039601 1.2177 0.00063777 437560 229.16 437560 229.16 752.898839928217 34.889 0.28819 34.889 34.718 35.006 0 16 9 2 0.956911877411841 0.000659666331840616 0.0226224425105329 0.00089747 1 7834 123.75 81.769 1 9072100 11285 26428 12244 25425 14980 10378 13669 16785 28646 3283.9 10682 24960 12305 25925 15036 11161 14387 16687 27630 3480.6 1 1 1 1 1 1 1 1 1 1 1370 426 1208 1271 1520 1520 EVEPEPTEDKDLEADEEDTR 20 Unmodified _EVEPEPTEDKDLEADEEDTR_ 0 0 0 1 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 935.784973144531 3 782.674956 2345.00304 32376.2976724457 2.0194 0.0015806 195200 152.78 195200 152.78 935.784357810819 52.402 0.48051 52.402 52.155 52.635 0 63 16 5 0.987688854027014 0.00474744607226187 0.0831099870628171 1.5232E-23 1 12178 284.98 251.91 1 50919000 22134 35939 22413 37567 27041 24248 25540 31561 40574 6070.3 20946 33959 22607 38259 27161 25003 26481 31557 39397 6446.3 1 1 1 1 1 1 1 1 1 1 1371 443 1209 1272 1521 1521 EVFEDAAEIR 10 Unmodified _EVFEDAAEIR_ 0 0 0 0 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 704.373962402344 2 589.788035 1177.56152 37202.7577854893 2.1334 0.0012582 194280 114.58 194280 114.58 704.369133885543 68.529 0.60879 68.529 68.185 68.794 0 62 20 4 0.985949211189102 0.00122788335868353 0.0358876160656349 9.7067E-06 1 16051 147.95 87.357 1 58642000 15006 12837 17178 12056 18358 15886 17541 16259 15266 8008 14207 12123 17185 12488 18547 15772 17832 16536 15159 7916.8 1 1 1 1 1 1 1 1 1 1 1372 437 1210 1273 1522 1522 EVFEFRPELVNDDDEEADDTR 21 Unmodified _EVFEFRPELVNDDDEEADDTR_ 0 0 0 1 Q8WU90 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 924.097900390625 3 847.3735 2539.09867 32363.8429402187 2.0469 0.0017345 90145 76.387 90148 76.389 924.094744963761 81.917 0.63649 81.917 81.593 82.23 0 79 21 5 0.953779612274954 0.00252953283350303 0.0581486719467882 6.9709E-23 1 19132 265.05 239.84 1 32820000 7997.9 9895.6 8553.6 8938.1 8240.3 7775.1 9510.6 9815.8 10741 24250 7570.1 9342.6 8579.6 9217.1 8399.9 7916.5 9653.7 10498 10546 23062 1 1 1 1 1 1 1 1 1 1 1373 1561 1211 1274 1523 1523 EVFSSCSSEVVLSGDDEEYQR 21 Phospho (STY) _EVFSSCSSEVVLS(ph)GDDEEYQR_ EVFSSCSSEVVLS(1)GDDEEYQR EVFS(-96.2)S(-88.47)CS(-65.8)S(-50.6)EVVLS(50.6)GDDEEY(-96.42)QR 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 911.059631347656 3 834.671991 2500.99414 33099.8377292939 1.7742 0.0014809 91517 76.387 91519 76.388 911.392985810133 72.237 1.3453 72.237 71.954 73.3 0 142 45 5 0.765634062065574 0.0027743576659504 0.0444737955674636 1.8946E-11 2 16918 189.09 168.66 6 44209000 8163.4 11213 9849.4 11417 8732 11126 9490 11454 12299 41068 7731 10593 9808.6 11705 8940.6 11246 9700.6 12714 12016 38935 2 2 2 2 2 2 2 2 2 2 1374 896 1212 1275 1524;1525 1524 1461 EVGGGHGCTSPPFPQEAR 18 Phospho (STY) _EVGGGHGCTS(ph)PPFPQEAR_ EVGGGHGCT(0.287)S(0.713)PPFPQEAR EVGGGHGCT(-3.94)S(3.94)PPFPQEAR 0 0 1 0 Q6ZN17 Q6ZN17 Q6ZN17 LIN28B Protein lin-28 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.330139160156 3 654.943651 1961.80912 36925.6169047329 1.5058 0.00098619 116630 76.388 116630 76.389 731.66560197899 48.77 0.91801 48.77 48.392 49.31 7.1054E-15 91 31 4 0.956777432894452 0.000885035862364507 0.00821126208616803 1.6072E-05 1 11301 130.17 111.34 2 39025000 14045 17494 13576 19580 17959 11905 15439 16644 19604 8364.6 13288 16538 13746 19854 17934 12350 15951 16763 19167 8261.5 1 1 1 1 1 1 1 1 1 1 1375 1290 1213 1276 1526 1526 2302 EVNSQEEEEEELLRK 15 Phospho (STY) _EVNS(ph)QEEEEEELLRK_ EVNS(1)QEEEEEELLRK EVNS(142.43)QEEEEEELLRK 0 0 1 1 Q96RL1 Q96RL1 Q96RL1 UIMC1 BRCA1-A complex subunit RAP80 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.730407714844 3 647.621008 1939.8412 34480.124328253 2.0219 0.0013094 235900 152.77 235900 152.78 800.395933738967 67.478 0.52691 67.478 67.238 67.765 0 53 17 4 0.947611163964817 0.00378264702782232 0.0867323073962996 8.4025E-07 1 15843 142.43 119.13 1 18007000 8533.2 10822 8969.5 10174 24884 9059.6 25254 15232 10702 31092 8076.2 10219 9202.2 10468 24304 9266.6 25290 15977 11177 29629 1 1 1 1 1 1 1 1 1 1 1376 1738 1214 1277 1527 1527 3191 EVPHSSPPYYEFLWGPR 17 Phospho (STY) _EVPHSS(ph)PPYYEFLWGPR_ EVPHS(0.029)S(0.971)PPYYEFLWGPR EVPHS(-15.32)S(15.32)PPY(-89.59)Y(-110.02)EFLWGPR 0 0 1 0 Q9UBF1 Q9UBF1 Q9UBF1 MAGEC2 Melanoma-associated antigen C2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.046508789063 3 714.322457 2139.94554 35442.1134922365 1.5392 0.0010995 106940 76.388 106940 76.389 791.045439203067 99.391 0.34283 99.391 99.207 99.55 0 34 11 5 0.959648351207997 0.00463149589362055 0.180547183397293 7.8186E-11 1 23103 189.34 162.9 4 29886000 5050.6 13995 6203.2 13741 5783.6 6922.4 6687.6 11037 15920 29549 4783.5 13219 6176.5 14015 5915.5 7350.2 7016.8 11802 15317 28079 1 1 1 1 1 1 1 1 1 1 1377 2119 1215 1278 1528 1528 3817 EVQAEQPSSSSPR 13 Phospho (STY) _EVQAEQPSSSS(ph)PR_ EVQAEQPSSSS(1)PR EVQAEQPS(-96.37)S(-70.21)S(-43.12)S(43.12)PR 0 0 1 0 Q9Y388 Q9Y388 Q9Y388 RBMX2 RNA-binding motif protein, X-linked 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.899719238281 2 741.317035 1480.61952 33912.6915490715 1.8551 0.0013753 154570 114.58 154570 114.58 855.899311828583 30.657 0.65452 30.657 30.405 31.059 0 62 21 5 0.990355704196291 0.00274531338006206 0.122272746525543 4.9232E-16 1 6823 236.67 173.98 4 79169000 15507 18634 17054 17793 17394 15464 17842 18105 20259 1460.6 14680 17598 17088 18283 17640 15640 18207 18102 19887 1794.3 1 1 1 1 1 1 1 1 1 1 1378 2264 1216 1279 1529 1529 4192 EVRPSPSK 8 Phospho (STY) _EVRPS(ph)PSK_ EVRPS(0.994)PS(0.006)K EVRPS(22.04)PS(-22.04)K 0 0 1 1 Q92833 Q92833 Q92833 JARID2 Protein Jumonji MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 479.933898925781 3 327.158463 978.453561 46054.3872705143 0.50746 0.00016602 466980 152.78 466980 152.78 479.933422257834 33.317 0.59393 33.317 33.054 33.648 0 37 20 2 0.844004796942484 0.00204113739935125 0.00860018335906716 0.013052 1 7439 64.121 37.335 2 38606000 33717 13096 33820 13888 10402 32970 10306 17760 13177 2034.8 31906 12376 33762 14518 11940 32009 10574 18465 12880 2327 1 1 1 1 1 1 1 1 1 1 1379 1624 1217 1280 1530 1530 3002 EVRSPTK 7 Phospho (STY) _EVRS(ph)PTK_ EVRS(0.93)PT(0.07)K EVRS(11.23)PT(-11.23)K 0 0 1 1 O43491 O43491 O43491 EPB41L2 Band 4.1-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 452.254638671875 3 299.479425 895.416447 46584.2469646128 0.98154 0.00029395 510130 152.77 510140 152.78 452.254620555401 30.664 0.5676 30.664 30.405 30.973 0 39 18 3 0.890104146267317 0.00371335025364799 0.114675680460334 0.0063976 1 6825 86.879 43.597 2 40851000 48841 13581 48800 13624 16351 44317 14184 24984 13460 3518.3 46216 12830 48740 14480 18478 42816 14522 25916 13312 3891.1 1 1 1 1 1 1 1 1 1 1 1380 114 1218 1281 1531 1531 196 EVSDSEAGGGPQGER 15 Phospho (STY) _EVS(ph)DSEAGGGPQGER_ EVS(0.728)DS(0.272)EAGGGPQGER EVS(4.28)DS(-4.28)EAGGGPQGER 0 0 1 0 Q9BW71 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 892.390014648438 2 777.807031 1553.59951 33228.6963349894 1.9273 0.0014991 147310 114.58 147310 114.58 892.38839593732 31.111 0.93935 31.111 30.851 31.791 0 63 31 3 0.983169146033105 0.00099930700760331 0.0441333080214416 1.711E-31 1 6929 309.91 269.89 2 16140000 8387.4 5616.3 8630.6 5753.5 9979 8702.9 10616 8272.6 6758.4 1639.2 7937.5 5306.3 8694.3 5946.6 10052 8589.4 10670 8364.1 6832.1 1735 1 1 1 1 1 1 1 1 1 1 1381 1849 1219 1282 1532 1532 3379 EVSPDPSTTGAASPASSSAGGSAAR 25 Phospho (STY) _EVSPDPSTTGAAS(ph)PASSSAGGSAAR_ EVSPDPS(0.003)T(0.052)T(0.169)GAAS(0.775)PASSSAGGSAAR EVS(-43.78)PDPS(-23.66)T(-11.76)T(-6.62)GAAS(6.62)PAS(-33.31)S(-37.41)S(-41.46)AGGS(-57.29)AAR 0 0 1 0 P23769 P23769 P23769 GATA2 Endothelial transcription factor GATA-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.385864257813 3 766.667569 2296.98088 33764.5566009467 1.7101 0.0013111 99634 76.386 99636 76.387 843.386990699652 39.273 0.46029 39.273 39.052 39.512 0 41 15 4 0.647412168181637 0.00303830080377753 0.0294169264880997 1.7828E-05 1 8926 131.68 117.8 9 19047000 13345 11809 15197 13967 24393 15061 24701 19985 16383 6334.3 12635 11168 15309 14227 24207 15121 24900 20046 16518 6427.1 1 1 1 1 1 1 1 1 1 1 1382 469 1220 1283 1533 1533 775 EVSPEVVR 8 Phospho (STY) _EVS(ph)PEVVR_ EVS(1)PEVVR EVS(161.44)PEVVR 0 0 1 0 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 612.316040039063 2 497.73389 993.453226 40021.2064845702 1.9563 0.00097372 230210 114.58 230210 114.58 612.315280821558 46.096 1.3039 46.096 45.614 46.917 0 157 44 6 0.911285309292986 0.00646490385684621 0.274352117221346 1.3231E-05 1 10617 161.44 71.559 1 129610000 40263 47184 40442 49581 40529 42761 40327 43086 49325 5350.6 38100 44587 40713 50652 41129 43180 41306 43367 48287 6035.4 1 1 1 1 1 1 1 1 1 1 1383 1183 1221 1284 1534 1534 2061 EVSPSDVR 8 Phospho (STY) _EVS(ph)PSDVR_ EVS(0.939)PS(0.061)DVR EVS(11.87)PS(-11.87)DVR 0 0 1 0 Q8WYP5 Q8WYP5 Q8WYP5 AHCTF1 Protein ELYS MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.291259765625 2 484.707872 967.401191 36931.5073851224 1.1677 0.00056599 236390 114.58 236390 114.58 599.287973692372 39.995 0.66679 39.995 39.599 40.265 7.1054E-15 52 22 3 0.992020568079185 0.00158919398929629 0.0331433933679935 0.001378 1 9048 106.18 14.311 2 39232000 29053 27114 26313 26175 22406 30257 21981 25161 28195 5181.4 27482 25608 26605 26999 22968 30092 22565 25592 27556 5461.2 1 1 1 1 1 1 1 1 1 1 1384 1585 1222 1285 1535 1535 2911 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 Phospho (STY) _EVSSRPST(ph)PGLSVVSGISATSEDIPNKIEDLR_ EVSSRPS(0.041)T(0.959)PGLSVVSGISATSEDIPNKIEDLR EVS(-42.86)S(-40.65)RPS(-13.72)T(13.72)PGLS(-60.38)VVS(-115.87)GIS(-159.86)AT(-177.42)S(-183.87)EDIPNKIEDLR 0 0 1 2 Q14C86 Q14C86 Q14C86 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 971.0146484375 4 855.927807 3419.68212 32148.4872096723 1.7789 0.0015226 133870 114.58 133870 114.58 970.760207201112 95.919 0.72487 95.919 95.651 96.375 -1.4211E-14 104 24 6 0.986212066343998 0.00874941529688972 0.202246137771295 1.3177E-34 1 22301 295.65 278.84 9 33659000 4454.6 9335.3 3554.5 10020 8330.3 4988.1 9633.1 8548.2 11633 18358 4211.8 8822.7 3691.9 10166 8191.9 5303.7 9797.8 8989.7 11394 17484 1 1 1 1 1 1 1 1 1 1 1385 1038 1223 1286 1536 1536 1795;1796;4565 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 Phospho (STY) _EVS(ph)SRPSTPGLSVVSGISATSEDIPNKIEDLR_ EVS(0.401)S(0.329)RPS(0.135)T(0.135)PGLSVVSGISATSEDIPNKIEDLR EVS(0.86)S(-0.86)RPS(-4.72)T(-4.72)PGLS(-34.83)VVS(-84.8)GIS(-130.24)AT(-141.47)S(-147.5)EDIPNKIEDLR 0 0 1 2 Q14C86 Q14C86 Q14C86 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 971.010314941406 4 855.927807 3419.68212 32760.9882860993 1.5884 0.0013595 133870 114.58 133870 114.58 971.011371584267 97.811 0.46141 97.811 97.501 97.963 0 45 15 5 0.826957823869876 0.00230359965999561 0.0208195527280559 7.9038E-18 1 22722 214.78 195.53 9 13579000 2852.5 5289.3 3302.1 4146.2 2229.2 3199.3 4173.4 5156.2 5404.4 21589 2700.9 4990.1 3289.7 4311.8 2354.2 3314.3 4188.5 5746.7 5280.4 20448 1 1 1 1 1 1 1 1 1 1 1386 1038 1223 1286 1537 1537 1795;1796;4565 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Phospho (STY) _EVSS(ph)RPST(ph)PGLSVVSGISATSEDIPNKIEDLR_ EVS(0.462)S(0.538)RPS(0.246)T(0.754)PGLSVVSGISATSEDIPNKIEDLR EVS(-0.66)S(0.66)RPS(-4.87)T(4.87)PGLS(-38.52)VVS(-60.14)GIS(-73.9)AT(-81.57)S(-88.66)EDIPNKIEDLR 0 0 2 2 Q14C86 Q14C86 Q14C86 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 991.004272460938 4 875.91939 3499.64845 31237.6141207465 1.476 0.0012929 130810 114.58 130810 114.58 991.002028428568 99.256 0.51296 99.256 99.123 99.636 -1.4211E-14 91 17 9 0.970662981436895 0.0111751734795563 0.346614808144232 2.0564E-08 1 23101 169.15 144.28 36 984360000 4677.9 5947.1 5426.4 5327 4344.9 4233.6 1895.9 6767.5 7115.9 117990 4429.3 5614.4 5403.2 5489.9 4443.3 4546.4 2190.4 10245 6799.9 111260 1 1 1 1 1 1 1 1 1 1 1387 1038 1223 1287 1538 1538 1795;1796;4565 EVTPILAQTQSSGPQTSTTPQVLSPTITSPPNALPR 36 Phospho (STY) _EVTPILAQTQSSGPQTSTTPQVLS(ph)PTITSPPNALPR_ EVTPILAQTQSSGPQT(0.001)S(0.004)T(0.004)T(0.004)PQVLS(0.948)PT(0.037)IT(0.002)S(0.001)PPNALPR EVT(-109.31)PILAQT(-75.76)QS(-57.18)S(-51.01)GPQT(-30.7)S(-24.08)T(-24.08)T(-24.08)PQVLS(14.04)PT(-14.04)IT(-26.59)S(-32.74)PPNALPR 0 0 1 0 P30260 P30260 P30260 CDC27 Cell division cycle protein 27 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1007.27758789063 4 949.485755 3793.91391 31820.1017321522 1.2084 0.0011474 60338 57.29 60339 57.291 1007.27643170038 91.073 0.4635 91.073 90.789 91.253 0 28 15 3 0.942980436590792 0.000222493205813781 0.00414869285316789 1.5969E-06 1 21250 135.59 121.75 12 17857000 1610.2 1817.7 1884.9 2319.7 2180.7 1510.7 1866 2968.7 2673.9 25084 1524.7 1720 1885.3 2338.2 2191.9 1615.9 1936.7 3677.2 2604 23688 1 1 1 1 1 1 1 1 1 1 1388 513 1224 1288 1539 1539 837 EVTWEVLEGEVEK 13 Unmodified _EVTWEVLEGEVEK_ 0 0 0 0 P05455 P05455 P05455 SSB Lupus La protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.036315917969 3 516.259361 1545.75625 39965.3010980904 2.1199 0.0010944 295930 152.78 295930 152.78 669.034741322875 96.51 0.46299 96.51 96.289 96.752 0 44 15 4 0.986300804879016 0.00284402653562591 0.0369924765003643 1.1277E-10 1 22439 187.44 141.47 1 9180200 4437.4 5688.4 3608.8 5706.9 4256.9 3910.6 5021.8 4620 6561.7 6472 4195.8 5373.7 3690.9 5829.7 4293.9 4021.1 5117.2 4801.7 6409.1 6201.1 1 1 1 1 1 1 1 1 1 1 1389 305 1225 1289 1540 1540 EVVEEAENGR 10 Unmodified _EVVEEAENGR_ 0 0 0 0 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.849670410156 2 566.267467 1130.52038 37510.026313525 1.2862 0.00072836 202350 114.58 202350 114.58 680.849721310717 40.068 1.058 40.068 39.742 40.8 0 115 35 4 0.989627283732487 0.00394015623494796 0.0422344439273273 2.0287E-20 1 9085 272.66 221.33 1 160850000 85619 38724 85330 38405 80703 84930 87273 68514 37018 4488.7 81016 36579 85895 40200 82217 82856 87145 69496 38657 5812.3 1 1 1 1 1 1 1 1 1 1 1390 311 1226 1290 1541 1541 EVYQQQQYGSGGR 13 Phospho (STY) _EVYQQQQYGS(ph)GGR_ EVYQQQQYGS(1)GGR EVY(-203.82)QQQQY(-177.8)GS(177.8)GGR 0 0 1 0 Q99729 Q99729 Q99729 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 904.916015625 2 790.330476 1578.6464 32418.5222057154 2.2077 0.0017448 144980 114.58 144980 114.58 904.912731606546 38.467 0.31279 38.467 38.297 38.61 0 27 10 3 0.960645061264443 0.000554015804390368 0.0144077580129833 1.1573E-22 1 8712 263.98 242.63 3 10512000 5167.9 17304 6490.6 15691 14391 6666.9 16137 13303 17151 2588.5 4895.1 16338 6559.6 16065 14163 7173.4 16370 13164 16880 2745.3 1 1 1 1 1 1 1 1 1 1 1391 1787 1227 1291 1542 1542 3295 EWNGVVSESDSPVK 14 Phospho (STY) _EWNGVVSESDS(ph)PVK_ EWNGVVSESDS(1)PVK EWNGVVS(-89.8)ES(-39.44)DS(39.44)PVK 0 0 1 0 P18858 P18858 P18858 LIG1 DNA ligase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.345031738281 3 538.234537 1611.68178 36977.7082238232 1.7437 0.00093853 283840 152.77 283850 152.78 691.009712138109 69.713 0.87284 69.713 69.374 70.247 -1.4211E-14 78 29 4 0.992747668411049 0.00559550037588814 0.217693715343383 5.4051E-09 1 16352 175.8 152.88 3 22752000 10796 10979 12911 9967.2 7838.8 12099 10327 12142 11071 22307 10224 10365 12822 10330 8290.2 12075 10413 12850 10892 21286 1 1 1 1 1 1 1 1 1 1 1392 434 1228 1292 1543 1543 705 EWSLESSPAQNWTPPQPR 18 Phospho (STY) _EWSLESSPAQNWT(ph)PPQPR_ EWSLESSPAQNWT(1)PPQPR EWS(-89.45)LES(-74.17)S(-68.37)PAQNWT(68.37)PPQPR 0 0 1 0 Q8N6T3 Q8N6T3 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.050109863281 3 730.659909 2188.9579 35786.5833769144 1.6736 0.0012228 104550 76.388 104550 76.389 807.381224780928 84.636 0.85331 84.636 84.157 85.01 -1.4211E-14 85 29 4 0.610676860777204 0.00231635460076 0.0374646813022178 2.1669E-05 1 19733 131.41 116.32 4 14515000 6063.4 6972.5 6272.5 6820.6 7163.3 6960.7 7495.3 8991.1 6693.9 32079 5738.3 6585.8 6315.5 7014.7 7220.6 7056.7 7591.6 9906.7 6638.9 30415 1 1 1 1 1 1 1 1 1 1 1393 1481 1229 1293 1544 1544 4682 EYFTFPASKSQDR 13 Phospho (STY) _EYFTFPASKS(ph)QDR_ EYFTFPAS(0.202)KS(0.798)QDR EY(-121.2)FT(-76.09)FPAS(-5.95)KS(5.95)QDR 0 0 1 1 P55196 P55196 P55196 MLLT4 Afadin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.350463867188 3 552.574894 1654.70285 36990.9556051024 1.9794 0.0010938 276480 152.78 276480 152.78 705.349603947874 75.44 0.74186 75.44 75.09 75.832 0 77 25 4 0.976924707108756 0.00212453407751429 0.0498159046277265 4.7588E-05 1 17680 128.26 97.287 4 17289000 4752.9 16352 5139.5 16281 5074.8 4714.9 6319.7 9530.9 15854 7722.1 4498.9 15446 5154.5 16535 5180.3 5317.1 6634.3 9606.3 15239 7491.9 1 1 1 1 1 1 1 1 1 1 1394 720 1230 1294 1545 1545 1196 EYGSPLK 7 Phospho (STY) _EYGS(ph)PLK_ EYGS(1)PLK EY(-82.65)GS(82.65)PLK 0 0 1 0 P21127;Q9UQ88 P21127 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.355224609375 2 437.191326 872.3681 38447.7854264636 2.033 0.00088882 524170 229.16 524170 229.16 666.35453153965 54.222 1.3031 54.222 53.859 55.162 0 116 44 4 0.951061291742723 0.00596303542934734 0.155868134088738 5.7407E-05 1 12595 138.66 79.414 2 191960000 44258 69562 46296 58871 56157 45599 63273 57222 61284 8331.8 41887 65652 46634 60887 56504 46460 64011 57199 60554 9169.8 1 1 1 1 1 1 1 1 1 1 1395 449 1231 1295 1546 1546 728 EYIPGQPPLSQSSDSSPTR 19 Phospho (STY) _EYIPGQPPLSQSSDS(ph)SPTR_ EYIPGQPPLSQSS(0.002)DS(0.603)S(0.395)PTR EY(-190.73)IPGQPPLS(-62.78)QS(-37.76)S(-25.2)DS(1.83)S(-1.83)PT(-37.69)R 0 0 1 0 P07814 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1178.56042480469 2 1063.47552 2124.93649 28978.6454759608 1.5794 0.0016797 107740 114.58 107740 114.58 1178.55825518753 64.9 1.5971 64.9 64.062 65.659 0 237 54 6 0.998110558091505 0.0126639884788925 0.340338498733916 1.4234E-22 2 15288 257.72 198.45 7 338730000 36930 33345 39869 32697 26124 48470 37739 35044 32724 25406 34956 31496 39831 33865 27482 47759 37720 36437 32502 24734 2 2 2 2 2 2 2 2 2 2 1396 322 1232 1296 1547;1548 1548 526;527;528 EYIPGQPPLSQSSDSSPTR 19 2 Phospho (STY) _EYIPGQPPLSQSS(ph)DS(ph)SPTR_ EYIPGQPPLS(0.268)QS(0.269)S(0.463)DS(0.533)S(0.383)PT(0.083)R EY(-45.32)IPGQPPLS(-2.48)QS(-2.48)S(2.48)DS(1.51)S(-1.51)PT(-8.48)R 0 0 2 0 P07814 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 812.697570800781 3 735.974884 2204.90282 34780.5118530582 1.8949 0.0013946 103790 76.388 103790 76.389 812.697071920841 69.282 0.6667 69.282 68.941 69.607 0 54 22 3 0.944007169641872 0.00136699581521448 0.0224720762243994 0.029548 1 16243 59.429 38.615 21 6095000 6413.5 6359.9 5460.8 5824 7285.1 6265 6870.5 6097 7067.8 23120 6065.2 6004.9 5575 6019.7 7279.5 6301.5 7018.9 6818.9 6965.5 21911 1 1 1 1 1 1 1 1 1 1 1397 322 1232 1297 1549 1549 526;527;528 EYSSLPLPR 9 Phospho (STY) _EYSS(ph)LPLPR_ EYS(0.069)S(0.931)LPLPR EY(-95.6)S(-11.33)S(11.33)LPLPR 0 0 1 0 Q12912 Q12912 Q12912 LRMP Lymphoid-restricted membrane protein;Processed lymphoid-restricted membrane protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.850463867188 2 571.268097 1140.52164 36488.9764901983 1.7612 0.0010061 200570 114.58 200580 114.58 685.849074812939 72.437 0.61699 72.437 72.017 72.634 0 45 20 3 0.801992513845871 0.000727659070821948 0.0186784401607114 0.00015672 1 17011 130.53 99.971 3 9958000 12146 7722.2 14263 6845.4 17971 12798 19660 13630 8024.1 10964 11501 7289.9 14289 7177.8 18031 12594 19612 13970 8410.9 10640 1 1 1 1 1 1 1 1 1 1 1398 913 1233 1298 1550 1550 1507 EYVNVSQELHPGAAK 15 Phospho (STY) _EYVNVS(ph)QELHPGAAK_ EYVNVS(1)QELHPGAAK EY(-117.12)VNVS(117.12)QELHPGAAK 0 0 1 0 O43561 O43561 O43561 LAT Linker for activation of T-cells family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.374572753906 3 574.601331 1720.78217 36998.493741929 1.8637 0.0010709 265880 152.78 265880 152.78 727.376709630281 65.341 0.78264 65.341 64.995 65.778 0 74 26 3 0.998435954697759 0.00429443413308866 0.0954015760511431 8.0464E-08 1 15298 172.3 146.48 2 270940000 4551.5 4724.2 4997 5348.7 29169 5137 31728 13853 5174 8679.4 4308.6 4466.3 5306.8 5450.4 28184 5284.2 31446 13820 6231.4 8493.3 1 1 1 1 1 1 1 1 1 1 1399 117 1234 1299 1551 1551 203 FALVTPK 7 Phospho (STY) _FALVT(ph)PK_ FALVT(1)PK FALVT(83.5)PK 0 0 1 0 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.385864257813 2 428.222429 854.430306 38085.1143606921 1.9308 0.0008268 535150 229.16 535150 229.16 657.384916573805 81.069 0.69542 81.069 80.695 81.391 0 64 23 4 0.583499069032201 0.00170275805080367 0.0831815143550985 0.015974 1 19008 83.499 20.216 1 33493000 21785 26729 21172 25860 9172.3 21079 10707 22992 30628 11890 20612 25245 21210 26528 10057 21388 11370 23347 29376 11728 1 1 1 1 1 1 1 1 1 1 1400 655 1235 1300 1552 1552 4472 FAMEPEEFDSDTLR 14 Unmodified _FAMEPEEFDSDTLR_ 0 0 0 0 P13667 P13667 P13667 PDIA4 Protein disulfide-isomerase A4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 958.451843261719 2 843.869427 1685.7243 33260.4540990715 1.3611 0.0011486 135780 114.58 135780 114.58 958.4502835259 85.729 0.4808 85.729 85.448 85.929 0 45 16 4 0.979042467943394 0.00106724395805916 0.0188021700559382 1.7019E-15 1 20008 276.17 234.17 1 14318000 10170 15868 9102.8 14595 12537 8444.1 12338 14142 15103 26531 9619.4 14983 9269 14964 12520 8859.9 12644 14764 14785 25309 1 1 1 1 1 1 1 1 1 1 1401 379 1236 1301 1553 1553 FANLTPSR 8 Phospho (STY) _FANLT(ph)PSR_ FANLT(0.994)PS(0.006)R FANLT(22.03)PS(-22.03)R 0 0 1 0 O15027 O15027 O15027 SEC16A Protein transport protein Sec16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 607.811279296875 2 493.228774 984.442996 40656.6934917467 1.2369 0.00061007 232310 114.58 232310 114.58 607.810434889254 59.771 0.77212 59.771 59.335 60.107 0 48 26 3 0.680612528366399 0.000505155952492181 0.00569848379767918 0.022685 1 14001 71.221 35.313 2 15051000 14359 16307 15139 14673 11282 15489 10748 13939 16124 3081.2 13590 15395 15151 15178 11674 15475 11113 14134 15681 3223.9 1 1 1 1 1 1 1 1 1 1 1402 75 1237 1302 1554 1554 4320 FAQSAPGSPLSSQPVLITVQR 21 Phospho (STY) _FAQSAPGS(ph)PLSSQPVLITVQR_ FAQSAPGS(1)PLSSQPVLITVQR FAQS(-57.8)APGS(50.65)PLS(-50.65)S(-72.11)QPVLIT(-150.94)VQR 0 0 1 0 Q01167 Q01167 Q01167 FOXK2 Forkhead box protein K2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 831.77685546875 3 755.054259 2262.14095 33849.8973023053 1.7289 0.0013054 101170 76.388 101170 76.389 831.776614928461 88.477 0.59761 88.477 88.196 88.794 0 82 20 5 0.967612268291563 0.00912506627771211 0.248480132746975 7.673E-12 1 20614 203.53 176.01 5 70285000 6280.2 8147.9 5333.5 6948.1 5047.3 6034.6 5460.9 5972.3 7764.2 16572 5939.1 7690.2 5422.2 7192.6 5147 6120 5602 6492.5 7563.2 15743 1 1 1 1 1 1 1 1 1 1 1403 833 1238 1303 1555 1555 1345 FASDDEHDEHDENGATGPVK 20 Phospho (STY) _FAS(ph)DDEHDEHDENGATGPVK_ FAS(1)DDEHDEHDENGATGPVK FAS(104.32)DDEHDEHDENGAT(-104.32)GPVK 0 0 1 0 P05455 P05455 P05455 SSB Lupus La protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.055114746094 4 563.22093 2248.85461 37401.6084482835 2.0722 0.0011671 203440 114.58 203440 114.58 678.053207648341 45.907 0.79271 45.907 45.643 46.436 0 90 26 5 0.757156981029445 0.00267501921423183 0.0371065743489255 8.6703E-08 1 10605 153.93 136.65 2 23222000 17026 21770 17198 21567 21034 17321 17050 16984 24064 9013 16112 20564 17347 22088 21069 17564 17739 17321 23446 8879.9 1 1 1 1 1 1 1 1 1 1 1404 305 1239 1304 1556 1556 501 FASDDEHDEHDENGATGPVKR 21 Phospho (STY) _FAS(ph)DDEHDEHDENGATGPVKR_ FAS(1)DDEHDEHDENGATGPVKR FAS(115.4)DDEHDEHDENGAT(-115.4)GPVKR 0 0 1 1 P05455 P05455 P05455 SSB Lupus La protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.078857421875 4 602.246208 2404.95573 36627.7444272194 1.9989 0.0012038 190260 114.58 190260 114.58 717.078151855662 38.892 1.737 38.892 38.383 40.12 0 189 59 5 0.956705022407493 0.00504781330596361 0.0411558697039998 2.1725E-16 1 8788 219.34 189.1 2 70911000 12053 20197 11993 17569 14576 13474 13962 16207 21881 54813 11405 19065 12110 18134 14638 13826 14458 17803 21254 51988 1 1 1 1 1 1 1 1 1 1 1405 305 1240 1305 1557 1557 501 FASDDEHDEHDENGATGPVKR 21 Phospho (STY) _FAS(ph)DDEHDEHDENGATGPVKR_ FAS(1)DDEHDEHDENGATGPVKR FAS(100.59)DDEHDEHDENGAT(-100.59)GPVKR 0 0 1 1 P05455 P05455 P05455 SSB Lupus La protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.075012207031 4 602.246208 2404.95573 36666.9182751153 1.6337 0.0009839 190250 114.58 190250 114.58 717.074490607099 39.737 0.92596 39.737 39.255 40.181 0 77 31 4 0.627626709087935 0.00424616112265516 0.0890467396315809 1.1768E-07 1 9031 139.67 119.07 2 74982000 17428 23734 20538 22260 19973 19936 19201 21787 24973 49843 16503 22412 20494 22909 20296 20204 19740 23284 24396 47437 1 1 1 1 1 1 1 1 1 1 1406 305 1240 1305 1558 1558 501 FASENDLPEWK 11 Phospho (STY) _FAS(ph)ENDLPEWK_ FAS(1)ENDLPEWK FAS(89.26)ENDLPEWK 0 0 1 0 P43487 P43487 P43487 RANBP1 Ran-specific GTPase-activating protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.310241699219 3 472.534147 1414.58061 40719.6647878866 1.5678 0.00074082 323310 152.78 323310 152.78 625.309376305789 89.037 0.57949 89.037 88.855 89.434 0 51 19 3 0.863419033450071 0.00301377471205226 0.0456394369756184 0.0039824 1 20758 89.26 70.303 1 9936300 4634.9 7976 4529.1 8133.7 4556.7 4393.8 5163.7 5072.9 9157 6031.8 4385.4 7535.5 4568.1 8281.7 4634.8 4590.9 5336.4 5243.9 8865.9 5797.1 1 1 1 1 1 1 1 1 1 1 1407 599 1241 1306 1559 1559 975 FCLSSPTEALK 11 Phospho (STY) _FCLSS(ph)PTEALK_ FCLS(0.052)S(0.474)PT(0.474)EALK FCLS(-9.56)S(0)PT(0)EALK 0 0 1 0 Q76L83 Q76L83 Q76L83 ASXL2 Putative Polycomb group protein ASXL2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.964904785156 2 666.798904 1331.58325 33222.2404301239 2.1039 0.0014029 343680 229.16 343680 229.16 895.961517314314 88.653 0.43142 88.653 88.479 88.911 0 21 14 2 0.634632245492644 0.00114418941858671 0.0932103174466832 0.0096062 1 20692 83.652 57.654 3 7032200 10605 12436 11188 12051 13368 11094 12505 12066 15965 20879 10037 11745 11257 12382 13428 11215 12866 12694 15605 19940 1 1 1 1 1 1 1 1 1 1 1408 1313 1242 1307 1560 1560 2346;4635 FCSNSGRLSGPAELR 15 Phospho (STY) _FCSNSGRLS(ph)GPAELR_ FCSNSGRLS(1)GPAELR FCS(-43.22)NS(-38.31)GRLS(38.31)GPAELR 0 0 1 1 O15320 O15320 O15320 CTAGE5 cTAGE family member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.980895996094 3 577.594182 1729.76072 38584.3119342582 1.8721 0.0010813 132250 76.387 132250 76.388 653.980547255363 60.245 0.55045 60.245 59.967 60.517 0 68 18 5 0.901098280635932 0.00400707245014318 0.0278248944802036 1.7655E-05 1 14109 134.86 113.85 3 44658000 20781 10530 20093 11459 15637 21869 14282 14823 12421 4214.5 19661 9952.6 20215 11876 16110 21376 14552 15269 12335 4311.5 1 1 1 1 1 1 1 1 1 1 1409 88 1243 1308 1561 1561 152 FDIYDPFHPTDEAYSPPPAPEQK 23 Phospho (STY) _FDIYDPFHPTDEAYS(ph)PPPAPEQK_ FDIYDPFHPT(0.028)DEAY(0.012)S(0.959)PPPAPEQK FDIY(-58.3)DPFHPT(-15.31)DEAY(-18.93)S(15.31)PPPAPEQK 0 0 1 0 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.879699707031 4 686.050634 2740.17343 34962.9387455372 1.5601 0.0010703 167010 114.58 167020 114.58 801.133101311154 99.249 0.39994 99.249 99.066 99.466 0 39 13 5 0.657349725827497 0.00247068219458208 0.0399636653934803 6.0834E-05 2 23043 104.87 90.104 4 27462000 17638 22775 16341 21121 14134 22291 25794 25442 24095 137420 16685 21505 16524 21806 14637 22589 25650 29538 23847 129980 2 2 2 2 2 2 2 2 2 2 1410 1953 1244 1309 1562;1563 1562 3550 FDLSHGSPQMVR 12 Phospho (STY) _FDLSHGS(ph)PQMVR_ FDLS(0.001)HGS(0.999)PQMVR FDLS(-29.27)HGS(29.27)PQMVR 0 0 1 0 Q8IVT5 Q8IVT5 Q8IVT5 KSR1 Kinase suppressor of Ras 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.6064453125 3 485.214643 1452.6221 41303.4437264305 1.851 0.00089813 157440 76.39 157440 76.391 561.604760711803 63.253 0.98792 63.253 62.932 63.92 7.1054E-15 93 33 4 0.917005874180372 0.00312463681009449 0.0642791210465756 0.0033904 1 14825 91.475 72.151 2 28008000 7464.2 9369.8 7874.7 9507.8 8342.3 8149.2 7837.3 8331.9 8202.2 2494.9 7064.5 8852.1 7910.5 9732.1 8431.4 8236 8012 8425.6 8077.7 2542 1 1 1 1 1 1 1 1 1 1 1411 1412 1245 1310 1564 1564 2573 FDPFGPIGTSPPGPNPDHLPPPGYDDMYL 29 Phospho (STY) _FDPFGPIGTS(ph)PPGPNPDHLPPPGYDDMYL_ FDPFGPIGT(0.145)S(0.855)PPGPNPDHLPPPGYDDMYL FDPFGPIGT(-7.72)S(7.72)PPGPNPDHLPPPGY(-80.09)DDMY(-93.1)L 0 0 1 0 Q92530 Q92530 Q92530 PSMF1 Proteasome inhibitor PI31 subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1140.99670410156 3 1064.13498 3189.3831 28625.0515808099 0.72839 0.00077511 71786 76.39 71786 76.39 1140.85810941231 102.33 0.14709 102.33 102.25 102.39 0 8 4 3 0.502955435369231 0.00117300300359667 0.0244481044817683 9.6651E-05 1 24102 106.09 94.121 4 11887000 2985.1 4393 3241.8 3538.8 3014.3 3590.2 3814.8 5115.2 4214.3 57555 2825.6 4145.1 3248.3 3686.5 3084 3723.8 3855.6 6806.1 4141.3 54313 1 1 1 1 1 1 1 1 1 1 1412 1595 1246 1311 1565 1565 2929 FDQLFDDESDPFEVLK 16 Unmodified _FDQLFDDESDPFEVLK_ 0 0 0 0 Q8NC51 Q8NC51 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.745300292969 3 648.635156 1942.88364 35347.3845555413 1.3774 0.00089343 235530 152.77 235530 152.78 801.74441635518 101.69 0.14604 101.69 101.61 101.76 0 7 4 2 0.568420330854244 0.00262023117348034 0.0749792074011248 3.4772E-07 1 23930 157.03 129.54 1 158300000 20668 30615 25322 28746 21435 21629 20620 29149 25611 61540 19574 28911 25181 29516 21975 22208 21165 30801 25058 58622 1 1 1 1 1 1 1 1 1 1 1413 1493 1247 1312 1566 1566 FDSSFSR 7 Phospho (STY) _FDS(ph)SFSR_ FDS(0.5)S(0.5)FSR FDS(0)S(0)FS(-54.22)R 0 0 1 0 P17026 P17026 P17026 ZNF22 Zinc finger protein 22 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.758239746094 2 463.176208 924.337862 42033.8376606326 1.3457 0.00062331 247380 114.58 247380 114.58 577.757793896486 57.678 0.54426 57.678 57.449 57.993 0 41 18 3 0.944505535386213 0.00231827520639098 0.122065139177468 0.011512 1 13495 85.676 49.281 3 15826000 14501 10608 15521 11580 15693 15819 16989 15539 10847 3716.2 13726 10026 15575 11898 15927 15671 17063 15710 10963 3858.9 1 1 1 1 1 1 1 1 1 1 1414 413 1248 1313 1567 1567 666;667 FDVPGDENAEMDAR 14 Unmodified _FDVPGDENAEMDAR_ 0 0 0 0 P46940 P46940 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 898.413452148438 2 783.330469 1564.64639 33182.7189506281 1.625 0.0012729 146270 114.58 146270 114.58 897.910781993627 64.771 0.45846 64.771 64.537 64.995 0 31 15 3 0.931800317242529 0.00061150377819038 0.0186056698936088 0.0005809 1 15201 117.21 85.92 1 12553000 11942 9210 12330 11819 13468 12688 14433 11639 12344 14423 11302 8715.2 12409 11990 13612 12693 14588 12150 12268 13851 1 1 1 1 1 1 1 1 1 1 1415 617 1249 1314 1568 1568 FECGEGEEAAETE 13 Unmodified _FECGEGEEAAETE_ 0 0 0 0 P43897 P43897 P43897 TSFM Elongation factor Ts, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.85498046875 2 729.272286 1456.53002 34074.7444499252 1.7606 0.0012839 157120 114.58 157120 114.58 843.853786020179 52.407 0.5692 52.407 52.127 52.697 0 71 19 5 0.983327709826151 0.00114998666311939 0.0205801839244543 3.7552E-15 1 12156 217.36 200.13 1 70304000 12560 9700.3 11464 10401 8513.4 12014 7391.2 10089 9263 11707 11881 9167.5 11568 10663 8799.5 11968 7628.7 10547 9060.5 11257 1 1 1 1 1 1 1 1 1 1 1416 600 1250 1315 1569 1569 FEDENFILK 9 Unmodified _FEDENFILK_ 0 0 0 0 P62937 P62937 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.95361328125 2 577.790047 1153.56554 36274.241924794 2.6368 0.0015235 396620 229.16 396620 229.16 806.952717798647 90.165 0.46534 90.165 89.87 90.336 0 34 15 3 0.661215537022003 0.000927626887703512 0.0697966576000199 0.001058 1 21008 120.99 77.285 1 7757500 18704 16661 18305 18034 16832 15618 16722 17555 17879 20288 17697 15747 18437 18394 17168 15825 17058 18145 17592 19510 1 1 1 1 1 1 1 1 1 1 1417 774 1251 1316 1570 1570 FEELENTDD 9 Unmodified _FEELENTDD_ 0 0 0 0 Q8N108 Q8N108 Q8N108 MIER1 Mesoderm induction early response protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.8076171875 2 556.224933 1110.43531 45107.8775659859 1.5454 0.0008596 206000 114.58 206000 114.58 670.806394684459 68.688 0.41343 68.688 68.499 68.912 0 27 13 3 0.943050981371437 0.000900227008698235 0.0147336089336761 0.00095602 1 16127 122.74 109.69 1 10417000 9465.1 9820.1 9123.5 11821 10174 9234 7211.3 9658.8 10896 6403.7 8955.1 9288.1 9213.7 11974 10224 9388.5 7583.7 9865 10595 6253.4 1 1 1 1 1 1 1 1 1 1 1418 1449 1252 1317 1571 1571 FEIGEGENLDLPYGLER 17 Unmodified _FEIGEGENLDLPYGLER_ 0 0 0 0 Q02790 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.709716796875 3 650.9863 1949.93707 37085.3454692991 1.5972 0.0010397 117340 76.388 117340 76.389 727.373849179705 99.039 0.28792 99.039 98.835 99.123 0 29 9 4 0.984918468498231 0.00405328755635643 0.143811256671195 4.5853E-11 1 22970 200.81 159.17 1 13651000 4364.4 4813 4341.6 4073.4 4422.1 5331.5 4155.2 5054.7 4579.6 12927 4129.7 4542.5 4373.5 4247.8 4479.5 5308.7 4254.1 5470.5 4500.7 12289 1 1 1 1 1 1 1 1 1 1 1419 854 1253 1318 1572 1572 FELLPTPPLSPSRR 14 Phospho (STY) _FELLPTPPLS(ph)PSRR_ FELLPT(0.002)PPLS(0.989)PS(0.009)RR FELLPT(-27.65)PPLS(20.21)PS(-20.21)RR 0 0 1 1 P01106 P01106 P01106 MYC Myc proto-oncogene protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.350402832031 3 563.962312 1688.86511 40120.5667547483 1.1434 0.00064481 135450 76.388 135450 76.388 640.350003323695 91.587 0.51165 91.587 91.312 91.824 0 32 17 3 0.990226087225656 0.000683069177388605 0.0199051521696014 0.0042904 1 21355 91.475 58.174 3 5225500 2838.1 3496.8 2750.6 3183.1 2425.5 3742.4 3027.8 3280.8 3401.8 8179.9 2685.2 3301.5 2771.8 3296.4 2489.4 3735.8 3063.4 3555.2 3340.7 7778.3 1 1 1 1 1 1 1 1 1 1 1420 283 1254 1319 1573 1573 467 FEPESPGFESR 11 Phospho (STY) _FEPES(ph)PGFESR_ FEPES(1)PGFESR FEPES(68.19)PGFES(-68.19)R 0 0 1 0 Q9H5H4 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.855895996094 2 681.274107 1360.53366 34602.8436399323 1.6437 0.0011198 168190 114.58 168190 114.58 795.854921586817 64.639 1.1264 64.639 64.3 65.427 0 119 38 5 0.988579347056023 0.00284801511065039 0.0858558846460537 2.3564E-09 1 15142 175.98 124 2 76277000 14877 29177 13636 29254 27194 15094 29142 24454 33063 14731 14073 27563 13972 29805 26827 15906 29678 24610 32457 14437 1 1 1 1 1 1 1 1 1 1 1421 1943 1255 1320 1574 1574 3520 FESPATGILSPR 12 Phospho (STY) _FESPATGILS(ph)PR_ FESPATGILS(1)PR FES(-107.37)PAT(-84.45)GILS(84.45)PR 0 0 1 0 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.406799316406 2 677.823767 1353.63298 34945.6110965631 1.8647 0.0012639 169040 114.58 169050 114.58 792.405545775596 80.589 0.9743 80.589 80.075 81.049 0 105 32 4 0.825165501206273 0.00640266689884501 0.140210915645685 6.2837E-08 1 18854 172.54 121.52 3 47515000 15793 33095 16734 29423 25735 15615 27014 25149 33754 16010 14948 31243 16908 30213 25609 16418 27621 25339 33019 15657 1 1 1 1 1 1 1 1 1 1 1422 655 1256 1321 1575 1575 1095 FFDSEDEDFEILSL 14 Phospho (STY) _FFDS(ph)EDEDFEILSL_ FFDS(1)EDEDFEILSL FFDS(131.77)EDEDFEILS(-131.77)L 0 0 1 0 Q9Y4P1 Q9Y4P1 Q9Y4P1 ATG4B Cysteine protease ATG4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1008.44604492188 2 893.360773 1784.70699 32006.5363661205 1.9737 0.0017633 128260 114.58 128260 114.58 1007.9422120906 105.31 1.2994 105.31 104.88 106.18 0 109 48 3 0.967262139987713 0.000772600927968322 0.0160255004564935 1.3571E-06 3 24897 141.73 122.9 2 6867800 2023.3 2778.3 2064.7 2435.4 1810.8 2627.5 2832.7 3408 2322.3 43392 1914.7 2622.6 2075.5 2524.6 1866.6 2716.6 2820.3 4695.7 2313 40937 3 3 3 3 3 3 3 3 3 3 1423 2283 1257 1322 1576;1577;1578 1578 4223 FFDSFGNLSSPSAILGNPK 19 Phospho (STY) _FFDSFGNLSS(ph)PSAILGNPK_ FFDSFGNLS(0.124)S(0.838)PS(0.038)AILGNPK FFDS(-60.92)FGNLS(-8.31)S(8.31)PS(-13.42)AILGNPK 0 0 1 0 P02100 P02100 P02100 HBE1 Hemoglobin subunit epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.436218261719 3 693.325867 2076.95577 33346.8363009447 1.5881 0.0011011 220350 152.77 220350 152.78 846.435172076302 101.91 0.22384 101.91 101.82 102.04 0 20 7 5 0.936282702411819 0.0114903414286104 0.224097668268238 5.1162E-05 1 23999 111.25 93.329 4 54839000 5738.5 44446 5562.6 43925 4813.2 7009 4668.1 20201 49097 34716 5429.5 41984 5601.9 44539 4968.6 8903.9 5975.4 20798 46560 33157 1 1 1 1 1 1 1 1 1 1 1424 284 1258 1323 1579 1579 470 FFMTPPR 7 Phospho (STY) _FFMT(ph)PPR_ FFMT(1)PPR FFMT(61.68)PPR 0 0 1 0 Q5TKA1 Q5TKA1 Q5TKA1 LIN9 Protein lin-9 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 602.792846679688 2 488.211539 974.408525 41188.128687595 1.3629 0.00066539 234700 114.58 234700 114.58 602.792323409556 86.882 0.72954 86.882 86.533 87.263 0 41 24 2 0.943011371267777 0.000825571356113481 0.017691058698969 0.036068 1 20287 61.679 47.161 1 5392200 5254.2 7246.6 5352.7 7030.9 5033.6 4865.6 4881.9 6158.8 8257.3 5628.9 4972.2 6844.3 5380 7197.5 5128 5000.5 5069.1 6297.2 8004.3 5442.8 1 1 1 1 1 1 1 1 1 1 1425 1195 1259 1324 1580 1580 4607 FFQGSQEFLASASASAER 18 Phospho (STY) _FFQGS(ph)QEFLASASASAER_ FFQGS(1)QEFLASASASAER FFQGS(72.14)QEFLAS(-72.14)AS(-84.62)AS(-96.01)AER 0 0 1 0 Q7Z2W4 Q7Z2W4 Q7Z2W4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.352661132813 3 671.629838 2011.86769 35831.2776421607 1.2666 0.00085072 113730 76.388 113740 76.388 748.351848952133 91.552 1.4905 91.552 91.168 92.658 0 155 51 5 0.967201204164997 0.00216230652796338 0.0214713459493778 3.6194E-05 2 21294 119.34 95.543 4 50664000 6965.6 7347.5 5940.6 6737.5 7190.7 6654.2 7166.4 7561.3 8264.7 38647 6587.4 6937.5 6056 6953.8 7224 6757.7 7326 8713.8 8108.2 36565 2 2 2 2 2 2 2 2 2 2 1426 1328 1260 1325 1581;1582 1581 2379;2380 FFQGSQEFLASASASAER 18 Phospho (STY) _FFQGSQEFLAS(ph)ASASAER_ FFQGS(0.203)QEFLAS(0.75)AS(0.041)AS(0.006)AER FFQGS(-5.67)QEFLAS(5.67)AS(-12.67)AS(-20.66)AER 0 0 1 0 Q7Z2W4 Q7Z2W4 Q7Z2W4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.020690917969 3 671.629838 2011.86769 NaN NaN NaN NaN NaN NaN NaN NaN 93.598 1 93.598 93.098 94.098 0 NaN NaN NaN 0.027658 1 21790 66.553 51.859 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1427 1328 1260 1325 1583 1583 2379;2380 FFTTPSK 7 Phospho (STY) _FFTT(ph)PSK_ FFT(0.14)T(0.86)PSK FFT(-7.89)T(7.89)PS(-35.72)K 0 0 1 0 O76021 O76021 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 455.912078857422 3 303.136888 906.388835 45459.346537802 0.86546 0.00026235 503980 152.78 503980 152.78 455.912146272476 77.109 0.60448 77.109 76.824 77.428 1.4211E-14 50 20 3 0.899975277800329 0.00244362610665936 0.016239857711179 0.013716 1 18079 80.438 51.351 3 14779000 10432 8571.2 9935.8 10804 2837.1 10661 2491.6 6669.6 10879 1311.5 9869.4 8109.6 9945.7 10954 3301.2 10645 2782.5 6884.3 10378 1389.3 1 1 1 1 1 1 1 1 1 1 1428 210 1261 1326 1584 1584 4347 FGDFLQHSPSILQSK 15 Phospho (STY) _FGDFLQHS(ph)PSILQSK_ FGDFLQHS(0.994)PS(0.006)ILQSK FGDFLQHS(22.27)PS(-22.27)ILQS(-92.53)K 0 0 1 0 Q96Q89 Q96Q89 Q96Q89 KIF20B Kinesin-like protein KIF20B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.396545410156 3 595.285343 1782.8342 36780.078767271 2.1591 0.0012853 256640 152.78 256640 152.78 748.394985275417 94.126 1.0363 94.126 93.702 94.738 0 87 35 3 0.985072765246041 0.00406572509220464 0.118095772269164 4.8965E-07 2 21939 153.36 127.49 3 10460000 21085 9654.7 20850 9303.3 6730.3 23630 6538.8 15253 9267.4 49181 19951 9118.5 20835 9804 7663.5 23034 6739.9 17107 9028.5 46662 2 2 2 2 2 2 2 2 2 2 1429 1729 1262 1327 1585;1586 1586 3177 FGEYNSNMSPEEK 13 Oxidation (M),Phospho (STY) _FGEYNSNM(ox)S(ph)PEEK_ FGEYNSNM(1)SPEEK FGEYNSNMS(1)PEEK FGEYNSNM(70.17)SPEEK FGEY(-50.33)NS(-38.49)NMS(38.49)PEEK 0 1 1 0 P78316 P78316 P78316 NOP14 Nucleolar protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.979553222656 3 543.204249 1626.59092 37489.6216504536 1.4177 0.00077012 281250 152.78 281250 152.78 695.979595174094 58.972 0.4899 58.972 58.728 59.218 7.1054E-15 51 16 4 0.721343846506412 0.00102190873501343 0.0293177772425303 0.011335 1 13831 70.167 53.673 3 13737000 16617 19264 19179 17180 13542 20611 15116 17653 20791 7945 15734 18186 19099 17822 14103 20484 15467 18062 20274 7889.8 1 1 1 1 1 1 1 1 1 1 1430 794 1263 1328 1587 1587 110 1268 FGEYNSNMSPEEK 13 Phospho (STY) _FGEYNSNMS(ph)PEEK_ FGEYNS(0.007)NMS(0.993)PEEK FGEY(-111.36)NS(-21.43)NMS(21.43)PEEK 0 0 1 0 P78316 P78316 P78316 NOP14 Nucleolar protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1035.46691894531 2 806.305278 1610.596 30316.7004113171 1.7362 0.0013999 284210 229.16 284210 229.16 1035.96925259494 66.546 0.49121 66.546 66.345 66.836 0 24 16 2 0.957421594724033 0.00114998125802992 0.0411680202764672 1.0275E-15 1 15622 221.44 178.65 3 12987000 14445 13867 15407 13413 4941.1 14328 7880 12687 14526 13529 13673 13097 15336 13815 5680 14326 8062 13197 14051 13033 1 1 1 1 1 1 1 1 1 1 1431 794 1263 1329 1588 1588 1268 FGGSGSQVDSAR 12 Phospho (STY) _FGGS(ph)GSQVDSAR_ FGGS(0.829)GS(0.171)QVDSAR FGGS(6.85)GS(-6.85)QVDS(-92.43)AR 0 0 1 0 Q13200 Q13200 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.838623046875 2 624.256249 1246.49794 36331.8563213512 1.9414 0.0012119 183550 114.58 183550 114.58 738.837251717672 44.145 0.52297 44.145 43.875 44.398 0 39 17 3 0.987367828530611 0.00167483056950613 0.0611243288303915 1.8499E-11 1 10124 208.18 183.8 3 26631000 20720 31942 22002 29965 20903 20689 22093 23734 31495 5499.1 19612 30163 22070 30739 21303 21201 22689 23854 30678 5727.4 1 1 1 1 1 1 1 1 1 1 1432 935 1264 1330 1589 1589 1540 FGINIPSPEHSNTIDVCNTVDIK 23 Phospho (STY) _FGINIPS(ph)PEHSNTIDVCNTVDIK_ FGINIPS(0.999)PEHS(0.001)NTIDVCNTVDIK FGINIPS(28.64)PEHS(-28.64)NT(-50.84)IDVCNT(-125.57)VDIK 0 0 1 0 Q9HCI7 Q9HCI7 Q9HCI7 MSL2 E3 ubiquitin-protein ligase MSL2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.14208984375 4 663.310922 2649.21458 35791.9781374239 1.9086 0.001266 172740 114.58 172740 114.58 778.142260201311 94.316 0.56956 94.316 94.14 94.71 0 44 19 3 0.964837994817934 0.0024630276578616 0.104477905698763 2.704E-12 1 21962 181.62 141.11 4 9045300 4546.2 3515 4304.9 3862.8 3514.4 4303.8 4038.4 5221 3869.7 19337 4300.9 3322.5 4340 3952.1 3620.4 4342.2 4081 5784.1 3825.4 18329 1 1 1 1 1 1 1 1 1 1 1433 1988 1265 1331 1590 1590 3610 FGQAATMEGIGAIGGTPPAFNR 22 Oxidation (M),Phospho (STY) _FGQAATM(ox)EGIGAIGGT(ph)PPAFNR_ FGQAATM(1)EGIGAIGGTPPAFNR FGQAATMEGIGAIGGT(1)PPAFNR FGQAATM(116.72)EGIGAIGGTPPAFNR FGQAAT(-64.58)MEGIGAIGGT(64.58)PPAFNR 0 1 1 0 Q15233 Q15233 Q15233 NONO Non-POU domain-containing octamer-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.4072265625 3 753.680316 2258.01912 34413.828507175 1.5231 0.0011479 101350 76.388 101360 76.389 830.402804767167 84.158 0.96627 84.158 83.755 84.721 0 143 33 6 0.956998922420855 0.00502979035940386 0.0690569260750101 5.2282E-05 1 19615 116.72 105.88 2 107210000 6713.3 5930.5 5694.8 5841.3 5054.8 6416 6258.9 5593.4 6050.4 13505 6348.6 5601.8 5787.3 6012.3 5184.3 6420.6 6307.5 6049.4 5978.8 12846 1 1 1 1 1 1 1 1 1 1 1434 1065 1266 1332 1591 1591 137 4567 FGQAATMEGIGAIGGTPPAFNR 22 Phospho (STY) _FGQAATMEGIGAIGGT(ph)PPAFNR_ FGQAATMEGIGAIGGT(1)PPAFNR FGQAAT(-89.31)MEGIGAIGGT(89.31)PPAFNR 0 0 1 0 Q15233 Q15233 Q15233 NONO Non-POU domain-containing octamer-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.071411132813 3 748.348677 2242.0242 34264.6541870951 2.0276 0.0015174 102070 76.387 102080 76.388 825.069946264613 93.53 1.4018 93.53 93 94.402 0 199 47 6 0.997105866451494 0.0291626950173152 0.498944188153157 8.781E-12 1 21766 194.66 174.92 2 191990000 8748 12353 9850.3 16149 7658.3 8909.3 13316 12279 16063 16906 8282 11691 9839.2 16233 7983.7 9327.5 13358 12696 15733 16203 1 1 1 1 1 1 1 1 1 1 1435 1065 1266 1333 1592 1592 4567 FGSNINLEADES 12 Phospho (STY) _FGS(ph)NINLEADES_ FGS(1)NINLEADES FGS(137.76)NINLEADES(-137.76) 0 0 1 0 Q9NQP4 Q9NQP4 Q9NQP4 PFDN4 Prefoldin subunit 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.855224609375 2 688.274304 1374.53406 35840.2916503723 1.7058 0.0011741 166480 114.58 166480 114.58 802.855418426099 81.292 0.60296 81.292 80.99 81.593 -1.4211E-14 59 20 4 0.993036664714668 0.00209060010337333 0.117593150637818 1.4745E-16 1 19012 244.14 233.68 2 19344000 9793.1 8826.2 10275 10702 9903.5 10913 9467.3 10766 10631 14703 9268.6 8348.5 10313 10877 10067 10955 9689.7 11248 10440 14094 1 1 1 1 1 1 1 1 1 1 1436 2006 1267 1334 1593 1593 3642 FGSPVLGTPK 10 Phospho (STY) _FGS(ph)PVLGTPK_ FGS(1)PVLGTPK FGS(54.8)PVLGT(-54.8)PK 0 0 1 0 Q96K83 Q96K83 Q96K83 ZNF521 Zinc finger protein 521 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.931274414063 2 541.767732 1081.52091 35903.2468924051 2.5976 0.0014073 422990 229.16 422990 229.16 770.930755058324 77.189 0.80841 77.189 76.737 77.545 1.4211E-14 75 27 4 0.979837118689961 0.00204858833136894 0.025409991564997 3.2377E-07 1 18074 173.04 134.24 2 26793000 27236 6279.2 26947 5774.7 23456 28092 21958 17855 7142.4 13790 25771 5928.9 27105 6318.7 23974 27060 22017 18722 7675.8 13398 1 1 1 1 1 1 1 1 1 1 1437 1707 1268 1335 1594 1594 3145 FGTFGGLGSK 10 Phospho (STY) _FGTFGGLGS(ph)K_ FGTFGGLGS(1)K FGT(-71.15)FGGLGS(71.15)K 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.899230957031 2 525.736432 1049.45831 35405.3998549413 1.0293 0.00054113 435890 229.16 435890 229.17 754.900178190267 87.887 0.75013 87.887 87.646 88.396 1.4211E-14 64 25 3 0.831070687558647 0.00137167173299268 0.0281038381818262 0.00037036 1 20489 107.99 82.056 2 17957000 35412 13465 37546 14939 5794.3 35271 6000.3 19036 13500 17194 33517 12729 37296 15576 7764.8 34275 6303.3 20241 13003 16631 1 1 1 1 1 1 1 1 1 1 1438 896 1269 1336 1595 1595 1462 FGYVDFESAEDLEK 14 Unmodified _FGYVDFESAEDLEK_ 0 0 0 0 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.03735351563 2 824.872493 1647.73043 31119.3627816193 1.8815 0.001552 277820 229.16 277820 229.16 1054.53758561967 95.55 0.54575 95.55 95.333 95.879 0 39 18 3 0.96098899316952 0.000896937437422332 0.0272748720971737 3.078E-15 1 22216 230.18 151.53 1 11138000 11638 9110.6 13196 6986 12200 13672 14046 13143 9009.4 33581 11018 8594.4 13190 7410.1 12461 13463 14071 14216 9103.2 31924 1 1 1 1 1 1 1 1 1 1 1439 437 1270 1337 1596 1596 FHGKGSGK 8 Phospho (STY) _FHGKGS(ph)GK_ FHGKGS(1)GK FHGKGS(54.26)GK 0 0 1 1 O43290 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 528.967468261719 3 299.804132 896.390566 44119.7282438213 0.60615 0.00018173 764380 229.16 764380 229.16 528.967269933342 36.983 0.55156 36.983 36.66 37.211 0 60 18 4 0.90692803280659 0.00307221574010527 0.0229328251680176 0.025096 1 8325 54.259 27.473 1 28485000 26473 27893 28870 27889 27470 27135 28409 28604 27143 6061.8 25059 26349 28918 28624 27971 27262 28838 28818 26836 6369.9 1 1 1 1 1 1 1 1 1 1 1440 103 1271 1338 1597 1597 170 FHKASQED 8 Phospho (STY) _FHKAS(ph)QED_ FHKAS(1)QED FHKAS(62.41)QED 0 0 1 1 O00567 O00567 O00567 NOP56 Nucleolar protein 56 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.369689941406 2 521.205496 1040.39644 36026.44178867 2.1957 0.0011444 439680 229.16 439680 229.16 750.368545176786 39.25 0.84121 39.25 38.962 39.803 0 70 28 4 0.982240075640573 0.00347270898056799 0.118271707418146 0.02301 1 8895 62.408 48.638 1 32468000 32205 28130 31467 27563 68051 33055 68203 45417 28051 5287.5 30471 26570 32176 28423 66863 33052 68318 45236 29380 6030 1 1 1 1 1 1 1 1 1 1 1441 54 1272 1339 1598 1598 78 FHSPHQEPTVVNQIVPLSGER 21 Phospho (STY) _FHS(ph)PHQEPTVVNQIVPLSGER_ FHS(0.999)PHQEPT(0.001)VVNQIVPLSGER FHS(29.65)PHQEPT(-29.65)VVNQIVPLS(-146.72)GER 0 0 1 0 Q6PIY7 Q6PIY7 Q6PIY7 PAPD4 Poly(A) RNA polymerase GLD2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.456970214844 3 817.732067 2450.17437 32736.6278918598 1.8549 0.0015168 93415 76.389 93417 76.39 894.455875729144 71.896 0.41393 71.896 71.721 72.135 0 31 13 3 0.774225637424124 0.00114983989508016 0.00728301193909978 5.8265E-10 1 16879 175.85 152.75 3 13248000 4348.5 6971.5 6291.6 6883.4 4325.4 6177.5 5657.8 6435.1 7734.9 22593 4122.1 6585.2 6202.1 7061.7 4526.3 6269.3 5752.1 7125.7 7543.9 21423 1 1 1 1 1 1 1 1 1 1 1442 1268 1273 1340 1599 1599 2246 FHSPSTTWSPNK 12 Phospho (STY) _FHS(ph)PSTTWSPNK_ FHS(0.993)PS(0.007)TTWSPNK FHS(21.82)PS(-21.82)T(-61.97)T(-82.03)WS(-142.44)PNK 0 0 1 0 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.989624023438 3 490.213408 1467.61839 39191.3231628225 1.6735 0.00082035 311650 152.78 311650 152.78 642.989060705851 60.505 0.844 60.505 60.079 60.923 0 98 28 5 0.971726331829728 0.00462528174160664 0.0381457155891872 7.7268E-11 1 14136 177.21 138.97 5 102360000 16361 17308 16741 16768 18448 21044 22462 20685 18244 7618.1 15483 16348 16864 17319 18673 20912 22556 20992 18180 7652.1 1 1 1 1 1 1 1 1 1 1 1443 1774 1274 1341 1600 1600 3263;3264 FHSPSTTWSPNKDTPQEK 18 Phospho (STY) _FHS(ph)PSTTWSPNKDTPQEK_ FHS(0.999)PS(0.001)TTWSPNKDTPQEK FHS(31.55)PS(-31.55)T(-60.42)T(-74.08)WS(-113.64)PNKDT(-149.4)PQEK 0 0 1 1 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.617126464844 4 542.492755 2165.94191 36990.1092846075 1.8949 0.001028 316820 171.87 316820 171.87 714.616225624739 58.76 1.4482 58.76 58.201 59.649 0 118 49 5 0.766977971107344 0.00510437820757541 0.0342687422951994 9.0353E-11 1 13750 182.77 163.56 6 45099000 23547 25897 28045 25316 26141 31904 33841 29831 30134 33108 22298 24460 27973 26135 26745 31721 33976 31001 29890 31866 1 1 1 1 1 1 1 1 1 1 1444 1774 1275 1342 1601 1601 3263;3264 FHSPSTTWSPNKDTPQEK 18 2 Phospho (STY) _FHS(ph)PSTTWS(ph)PNKDTPQEK_ FHS(0.91)PS(0.067)T(0.022)T(0.019)WS(0.964)PNKDT(0.018)PQEK FHS(11.38)PS(-11.38)T(-17.03)T(-18.76)WS(17.36)PNKDT(-17.36)PQEK 0 0 2 1 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.142150878906 3 749.643358 2245.90824 31661.3597116538 2.0163 0.0015115 305700 229.16 305700 229.17 979.141609436582 61.346 0.52644 61.346 61.095 61.621 0 43 17 3 0.98461964072251 0.00231092879566755 0.0351806342083823 2.8883E-05 1 14383 125.11 105.36 15 16658000 14662 13868 14949 13450 8893.4 16286 11692 16304 14014 11246 13875 13098 14968 13881 9424.4 16219 11831 16692 13729 10967 1 1 1 1 1 1 1 1 1 1 1445 1774 1275 1343 1602 1602 3263;3264 FICVTPTTCSNTIDLPMSPR 20 Oxidation (M),Phospho (STY) _FICVTPTTCSNTIDLPM(ox)S(ph)PR_ FICVTPTTCSNTIDLPM(1)SPR FICVTPTTCSNTIDLPMS(1)PR FICVTPTTCSNTIDLPM(181.11)SPR FICVT(-148.56)PT(-143.74)T(-136.23)CS(-95.23)NT(-64.17)IDLPMS(64.17)PR 0 1 1 0 P40763 P40763 P40763 STAT3 Signal transducer and activator of transcription 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.404663085938 3 802.689495 2405.04665 33221.9634067345 1.754 0.001408 95164 76.387 95165 76.388 879.410522392121 88.968 0.75391 88.968 88.623 89.377 0 116 25 6 0.972849468412749 0.00692335829481901 0.0735345948461592 4.3334E-11 1 20705 181.11 164.93 6 79249000 4878.2 3275 6050.5 3363.4 5083.8 5639.6 5778.9 5089.6 3338.8 15133 4620.4 3094.3 6014.6 3484.6 5223.6 5572.8 5782.3 5582.6 3397.9 14367 1 1 1 1 1 1 1 1 1 1 1446 571 1276 1344 1603 1603 75 920 FICVTPTTCSNTIDLPMSPR 20 Phospho (STY) _FICVTPTTCSNTIDLPMS(ph)PR_ FICVTPTTCSNTIDLPMS(1)PR FICVT(-94.95)PT(-86.53)T(-77.11)CS(-59.26)NT(-44.42)IDLPMS(44.42)PR 0 0 1 0 P40763 P40763 P40763 STAT3 Signal transducer and activator of transcription 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 874.41259765625 3 797.357856 2389.05174 32744.3234887733 1.6384 0.0013064 95800 76.387 95802 76.388 874.079732888395 98.054 0.84323 98.054 97.731 98.574 0 132 28 7 0.995780644219104 0.00811350482111762 0.0726611208686487 1.9461E-05 2 22729 128.29 109.88 6 86654000 7488.5 7602.9 6979.2 7617.5 7216.9 7540.6 7436.8 7790.2 7102.5 30620 7084.1 7182.3 7060.3 7819.2 7312.5 7622.5 7550.3 8727.1 7022.2 29013 2 2 2 2 2 2 2 2 2 2 1447 571 1276 1345 1604;1605 1605 920 FIGSISPLNPQPR 13 Phospho (STY) _FIGSIS(ph)PLNPQPR_ FIGS(0.002)IS(0.998)PLNPQPR FIGS(-27.68)IS(27.68)PLNPQPR 0 0 1 0 Q7Z591 Q7Z591 Q7Z591 AKNA AT-hook-containing transcription factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.959838867188 2 753.379241 1504.74393 33065.0049190181 1.4041 0.0010578 152090 114.58 152090 114.58 867.960554837673 89.305 0.40788 89.305 89.026 89.434 0 21 13 2 0.900038823346801 0.000297046494316682 0.0048120263824017 1.0606E-06 1 20827 139.7 104.5 2 6316700 9829.3 4776.5 10742 5601.8 4364 9868.8 5434.2 6965.5 5417.3 25885 9304.4 4516.9 10688 5770 4820.3 9713.9 5479.6 7879.3 5346 24535 1 1 1 1 1 1 1 1 1 1 1448 1346 1277 1346 1606 1606 2427 FIIGSVSEDNSEDEISNLVK 20 Phospho (STY) _FIIGSVSEDNS(ph)EDEISNLVK_ FIIGSVS(0.003)EDNS(0.997)EDEISNLVK FIIGS(-37.77)VS(-24.99)EDNS(24.99)EDEIS(-44.83)NLVK 0 0 1 0 Q13085 Q13085 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.34765625 4 569.51489 2274.03045 38217.5294437341 1.4452 0.00082308 201190 114.58 201190 114.58 684.349710412886 100.92 0.31729 100.92 100.78 101.1 0 29 10 5 0.663660648392567 0.00344463386151559 0.067993395908345 0.0024524 2 23659 94.259 76.771 4 46290000 12791 10382 14190 10157 9268.8 15444 9132.8 12593 10873 85969 12109 9806.5 14148 10528 9696.3 15371 9350.6 15332 10654 81242 2 2 2 2 2 2 2 2 2 2 1449 921 1278 1347 1607;1608 1607 1518 FIQELSGSSPK 11 Phospho (STY) _FIQELSGSS(ph)PK_ FIQELSGS(0.004)S(0.996)PK FIQELS(-81.99)GS(-23.62)S(23.62)PK 0 0 1 0 Q01664 Q01664 Q01664 TFAP4 Transcription factor AP-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.977233886719 3 424.867238 1271.57988 40816.5642302545 1.5894 0.00067531 359580 152.78 359590 152.78 577.642534661503 83.014 1.0425 83.014 82.683 83.726 0 125 35 5 0.986213159252818 0.00807965143813075 0.0344057875875453 6.0846E-07 1 19381 149.09 124.3 3 106700000 9096.1 4898.5 9554.5 4642.8 4735.3 9022.3 5998.4 6680.3 5290.4 4950.2 8609 4626 9537.9 4853 5107.1 8828 6025.8 6940.8 5250.1 4815.8 1 1 1 1 1 1 1 1 1 1 1450 841 1279 1348 1609 1609 1358 FIQELSGSSPKR 12 Phospho (STY) _FIQELSGSS(ph)PKR_ FIQELSGS(0.032)S(0.968)PKR FIQELS(-37.81)GS(-14.86)S(14.86)PKR 0 0 1 1 Q01664 Q01664 Q01664 TFAP4 Transcription factor AP-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.676879882813 3 476.900941 1427.68099 39748.8695418872 1.9316 0.00092119 320350 152.78 320350 152.78 630.010293220659 72.33 0.67737 72.33 71.986 72.663 0 70 22 5 0.96570801304578 0.00321977112640295 0.0264211018736194 0.00011423 1 16940 114.52 83.63 3 54747000 15047 8298.8 16153 9215.1 8807.8 13831 9241.5 10954 10442 4024.5 14243 7844.8 16113 9480.1 9379.1 13629 9419.1 11221 10252 4043 1 1 1 1 1 1 1 1 1 1 1451 841 1280 1349 1610 1610 1358 FIQENVFVAANHNGSPLSIK 20 Phospho (STY) _FIQENVFVAANHNGS(ph)PLSIK_ FIQENVFVAANHNGS(0.999)PLS(0.001)IK FIQENVFVAANHNGS(32.93)PLS(-32.93)IK 0 0 1 0 P11172 P11172 P11172 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 908.48291015625 3 755.706971 2264.09908 32667.8944769865 1.6834 0.0012721 202160 152.77 202160 152.78 908.48248915142 94.71 0.4853 94.71 94.485 94.97 0 39 16 3 0.909065360564347 0.00205214737701489 0.0316143973950812 2.8236E-16 1 22047 226.03 190.09 2 13291000 5724.3 8057.2 5300.6 8518.8 5779.6 4656.4 5444.6 7756.6 9179.8 20228 5415.1 7614 5367 8656.6 5835.7 4916.7 5660.5 8269.8 8899.3 19226 1 1 1 1 1 1 1 1 1 1 1452 361 1281 1350 1611 1611 587 FISDRESRR 9 Phospho (STY) _FISDRES(ph)RR_ FISDRES(1)RR FIS(-38.57)DRES(38.57)RR 0 0 1 2 Q9H2H9 Q9H2H9 Q9H2H9 SLC38A1 Sodium-coupled neutral amino acid transporter 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 492.251098632813 3 415.862709 1244.5663 44014.6011827323 0.63577 0.00026439 183680 76.388 183690 76.388 492.250536752636 36.577 0.63415 36.577 36.26 36.895 -7.1054E-15 47 21 3 0.561729231476936 0.00110937222368938 0.00955824703310323 0.051998 1 8259 47.621 17.071 2 20550000 26520 17806 30634 15287 12792 26127 12044 19638 18081 2873.3 25110 16807 30390 16024 14030 25628 12461 20036 17584 3160.1 1 1 1 1 1 1 1 1 1 1 1453 1919 1282 1351 1612 1612 3483 FIYYPNPTFELLSPTGVLDQK 21 Unmodified _FIYYPNPTFELLSPTGVLDQK_ 0 0 0 0 O75051 O75051 O75051 PLXNA2 Plexin-A2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.402954101563 4 611.320243 2441.25186 37077.1225399819 2.0015 0.0012235 187430 114.58 187430 114.58 726.151501194922 64.909 0.37193 64.909 64.711 65.082 0 43 12 4 0.925840343571478 0.00222005788492081 0.0180153646649489 0.035802 1 15250 47.397 13.388 1 16417000 9234.9 8010.5 10434 8280.7 15791 10312 9169.6 8459.6 8548.3 7238.1 8743.1 7568.8 10490 8518.5 15614 10236 9634.8 8775.5 8460.9 7011.4 1 1 1 1 1 1 1 1 1 1 1454 165 1283 1352 1613 1613 FKAEAPLPSPK 11 Phospho (STY) _FKAEAPLPS(ph)PK_ FKAEAPLPS(1)PK FKAEAPLPS(85.62)PK 0 0 1 1 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.382263183594 3 422.21609 1263.62644 38898.4564095651 1.8103 0.00076433 542770 229.16 542770 229.17 651.714907189048 68.725 0.56124 68.725 68.472 69.033 -1.4211E-14 56 18 4 0.749477604393916 0.00532200608792355 0.0368025461463283 0.0050718 1 16111 85.619 71.147 1 62087000 55023 29752 51657 29344 17032 48549 18784 30010 31241 6706.9 52054 28103 51789 30463 19366 47586 19377 31022 30297 7009.9 1 1 1 1 1 1 1 1 1 1 1455 896 1284 1353 1614 1614 1463 FKIDSNISPK 10 Phospho (STY) _FKIDSNIS(ph)PK_ FKIDSNIS(1)PK FKIDS(-40.26)NIS(40.26)PK 0 0 1 1 Q9H501 Q9H501 Q9H501 ESF1 ESF1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.027648925781 4 307.90479 1227.59005 45101.2522731657 0.66193 0.00020381 558200 171.87 558200 171.87 479.777098166165 70.642 0.40796 70.642 70.476 70.884 0 39 13 4 0.950794516868429 0.00223275638102632 0.0137584473631134 0.0063189 1 16580 85.536 60.6 2 17951000 13118 13215 13240 13033 8847 12730 9683 12244 15205 16747 12413 12483 13273 13388 9254.4 12799 9967.6 12805 14768 16053 1 1 1 1 1 1 1 1 1 1 1456 1942 1285 1354 1615 1615 3517 FKIPGSPPESMGR 13 Phospho (STY) _FKIPGS(ph)PPESMGR_ FKIPGS(0.98)PPES(0.02)MGR FKIPGS(16.93)PPES(-16.93)MGR 0 0 1 1 P50395 P50395 P50395 GDI2 Rab GDP dissociation inhibitor beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.00927734375 3 494.898543 1481.6738 38994.8599013741 1.976 0.00097792 308700 152.77 308700 152.78 647.674023758211 73.036 1.1912 73.036 72.281 73.473 0 128 40 4 0.802895806336201 0.00221350465173231 0.0397407438746981 0.016432 1 17109 61.524 45.633 2 16670000 9816.2 13427 10972 13870 6491.9 11352 7558.1 11347 15311 7263 9293 12687 10929 14173 6874.9 11505 7854.6 11601 14778 7101.6 1 1 1 1 1 1 1 1 1 1 1457 661 1286 1355 1616 1616 1117 FLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQK 34 Unmodified _FLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQK_ 0 0 0 0 P07237 P07237 P07237 P4HB Protein disulfide-isomerase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1406.26257324219 3 1253.15355 3756.43882 27027.3072615791 1.4564 0.0018251 121910 152.77 121910 152.78 1406.93148494261 90.985 0.37854 90.985 90.789 91.168 0 28 12 4 0.886216510799485 0.000855770407645617 0.0180782309180052 4.1483E-13 2 21194 209.96 202.78 1 13342000 5728.2 3647.9 6669.9 3522.4 4908.1 5968.5 4377.6 6246.7 3991 28511 5423.9 3445.3 6639.5 3663.7 5077 5930.5 4470.9 7114.2 3954.3 26991 2 2 2 2 2 2 2 2 2 2 1458 316 1287 1356 1617;1618 1617 FLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQK 34 Unmodified _FLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQK_ 0 0 0 0 P07237 P07237 P07237 P4HB Protein disulfide-isomerase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.95080566406 4 940.116982 3756.43882 31063.000250517 1.4545 0.0013674 121880 114.58 121880 114.58 1054.94958667321 91.009 0.63544 91.009 90.705 91.34 -1.4211E-14 70 21 6 0.708249649777957 0.00153300171442061 0.0129919314279382 1.1427E-12 1 21220 201.51 189.58 1 33128000 7884.2 4667.6 7514.7 5704.6 5372 10091 7159.6 6466 5191.1 23169 7459.1 4415.3 7565.3 5864.5 5601.4 9917.3 7148.1 7324.5 5205.6 21966 1 1 1 1 1 1 1 1 1 1 1459 316 1287 1356 1619 1619 FLLGPPQGGSPR 12 Phospho (STY) _FLLGPPQGGS(ph)PR_ FLLGPPQGGS(1)PR FLLGPPQGGS(116.9)PR 0 0 1 0 Q8IY92 Q8IY92 Q8IY92 SLX4 Structure-specific endonuclease subunit SLX4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.903625488281 2 653.321195 1304.62784 35773.0502179423 1.6415 0.0010724 175380 114.58 175380 114.58 767.902887634873 84.987 0.84161 84.987 84.663 85.505 1.4211E-14 97 28 5 0.95891238010774 0.00169793337988384 0.0822103459787586 0.00014868 1 19834 116.9 88.697 1 9500100 13828 11157 15365 10943 9357.6 13230 9423.7 11688 11202 19553 13090 10538 15310 11286 9853.4 13176 9638.1 12373 10977 18682 1 1 1 1 1 1 1 1 1 1 1460 1435 1288 1357 1620 1620 2617 FLMECRNSPVTK 12 Oxidation (M),Phospho (STY) _FLM(ox)ECRNS(ph)PVTK_ FLM(1)ECRNSPVTK FLMECRNS(0.876)PVT(0.124)K FLM(52.42)ECRNSPVTK FLMECRNS(8.51)PVT(-8.51)K 0 1 1 1 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.339416503906 3 526.566576 1576.6779 37606.0362394645 1.3765 0.00072484 290130 152.77 290130 152.77 679.339174084542 60.728 0.87242 60.728 60.459 61.331 0 90 29 5 0.70890741386917 0.00558504332000838 0.0704800181585112 0.050769 1 14247 52.42 37.492 2 59946000 38368 37177 37161 33617 41548 37693 52562 44350 36768 11860 36301 35100 37563 34800 42044 37706 52543 44586 36949 12194 1 1 1 1 1 1 1 1 1 1 1461 964 1289 1358 1621 1621 127 1633 FLMECRNSPVTK 12 Phospho (STY) _FLMECRNS(ph)PVTK_ FLMECRNS(0.997)PVT(0.003)K FLMECRNS(25.3)PVT(-25.3)K 0 0 1 1 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.343505859375 3 521.234938 1560.68299 37557.6928894816 1.5822 0.00082468 293100 152.77 293100 152.78 674.34432359198 70.599 0.69773 70.599 70.276 70.974 0 89 23 6 0.988694938249064 0.0036471755174899 0.00731392854756882 9.8472E-05 1 16543 114.29 85.711 2 101270000 21864 20585 24365 21298 31023 23503 33804 25675 21041 8329.8 20699 19450 24477 21860 31117 23502 33926 25920 21303 8437.7 1 1 1 1 1 1 1 1 1 1 1462 964 1289 1359 1622 1622 1633 FLMECRNSPVTKTPPR 16 2 Phospho (STY) _FLMECRNS(ph)PVTKT(ph)PPR_ FLMECRNS(1)PVT(0.071)KT(0.929)PPR FLMECRNS(47)PVT(-11.17)KT(11.17)PPR 0 0 2 2 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.816345214844 4 523.983185 2091.90363 39474.5015366384 1.7081 0.00089501 218670 114.58 218680 114.58 638.814996512024 68.723 0.87791 68.723 68.272 69.15 -1.4211E-14 95 29 5 0.953028413962224 0.00225173536323962 0.015734505627371 0.00012206 1 16125 102.45 81.25 3 21767000 7000.3 6844.8 7314.5 8058.9 11503 6366.6 13311 8093.1 8169.5 4195.3 6625.3 6472.9 7401.9 8173.4 11447 6486.7 13322 8177.5 8279 4137.7 1 1 1 1 1 1 1 1 1 1 1463 964 1290 1360 1623 1623 1633;4543 FLPLNIRNSPFTR 13 Phospho (STY) _FLPLNIRNS(ph)PFTR_ FLPLNIRNS(0.998)PFT(0.002)R FLPLNIRNS(26.88)PFT(-26.88)R 0 0 1 1 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.675109863281 3 552.287019 1653.83923 38673.4098503348 1.8135 0.0010016 138310 76.387 138310 76.388 628.67438843356 94.176 0.91681 94.176 93.793 94.71 -1.4211E-14 105 31 4 0.986503144712923 0.00268656040438836 0.0803430179570831 7.6748E-07 1 21896 138.66 100.05 2 21950000 6934 3861.4 5316 4439.5 3217.8 5545.6 3298.2 5538.1 5022.2 6759 6555.3 3651 5420.4 4540.8 3392 5521.9 3400.6 5759.1 4882.2 6492.5 1 1 1 1 1 1 1 1 1 1 1464 1353 1291 1361 1624 1624 2452 FLSQPFQVAEVFTGHMGK 18 Oxidation (M),Phospho (STY) _FLS(ph)QPFQVAEVFTGHM(ox)GK_ FLSQPFQVAEVFTGHM(1)GK FLS(1)QPFQVAEVFTGHMGK FLSQPFQVAEVFTGHM(145.33)GK FLS(91.28)QPFQVAEVFT(-91.28)GHMGK 0 1 1 0 P06576 P06576 P06576 ATP5B ATP synthase subunit beta, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.106323242188 3 706.995464 2117.96456 33418.5185661199 1.5188 0.0010738 216090 152.78 216090 152.78 860.105354637703 100.99 0.25991 100.99 100.81 101.07 0 21 8 5 0.890093531312724 0.0176428020767918 0.445693719488388 2.1886E-07 1 23683 145.33 124.71 2 102940000 35963 14597 33869 19407 40698 29210 41042 31157 17110 74719 34022 13817 34309 19790 40880 29006 41106 33429 17898 71078 1 1 1 1 1 1 1 1 1 1 1465 313 1292 1362 1625 1625 31 515 FLSQPFQVAEVFTGHMGK 18 Phospho (STY) _FLS(ph)QPFQVAEVFTGHMGK_ FLS(1)QPFQVAEVFTGHMGK FLS(138.46)QPFQVAEVFT(-138.46)GHMGK 0 0 1 0 P06576 P06576 P06576 ATP5B ATP synthase subunit beta, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.773010253906 3 701.663826 2101.96965 34004.194803727 1.2877 0.00090353 217730 152.77 217730 152.78 854.772989959211 101.77 0.1952 101.77 101.7 101.9 0 24 6 6 0.985881746729841 0.0342341952317603 0.645155242954725 1.6504E-31 1 23955 310.8 289.14 2 233180000 68021 23936 72956 22895 95827 68204 96215 63219 29945 97258 64383 22606 73459 24299 95838 66463 96105 66537 32358 93043 1 1 1 1 1 1 1 1 1 1 1466 313 1292 1363 1626 1626 515 FNADEFEDMVAEK 13 Unmodified _FNADEFEDMVAEK_ 0 0 0 0 P27635 P27635 P27635 RPL10 60S ribosomal protein L10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.337341308594 3 515.557301 1543.65007 38416.9834046824 2.0235 0.0010433 296330 152.78 296330 152.78 668.333420834579 97.722 0.77784 97.722 97.215 97.992 0 80 26 5 0.936831085182578 0.00337189651605325 0.112609612391839 3.7306E-05 1 22653 131.53 113.22 1 22662000 5704.2 5693 6451.6 5512.6 4040.5 6808.3 5134.4 5776.8 6368.5 4445.8 5400.4 5376.9 6426 5692 4259.3 6761.9 5207.6 5968.5 6231.5 4319.9 1 1 1 1 1 1 1 1 1 1 1467 486 1293 1364 1627 1627 FNADEFEDMVAEK 13 Unmodified _FNADEFEDMVAEK_ 0 0 0 0 P27635 P27635 P27635 RPL10 60S ribosomal protein L10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1001.99151611328 2 772.832314 1543.65007 33055.3711847295 1.8862 0.0014577 296520 229.16 296530 229.16 1001.99418090226 97.68 0.46175 97.68 97.414 97.876 0 23 15 2 0.928335018332426 0.000445677216903503 0.00903478436456795 5.2221E-07 1 22701 189.5 155.12 1 6172800 7741 7843.8 7680 7778 6330.4 8496.8 7151.4 8209.6 8912.6 34069 7324.8 7409.4 7721.8 8001.8 6517.1 8545.2 7288.3 9272.5 8719.3 32270 1 1 1 1 1 1 1 1 1 1 1468 486 1293 1364 1628 1628 FNADEFEDMVAEKR 14 Unmodified _FNADEFEDMVAEKR_ 0 0 0 1 P27635 P27635 P27635 RPL10 60S ribosomal protein L10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.36962890625 3 567.591005 1699.75119 38606.2381439448 1.9999 0.0011351 269170 152.78 269170 152.78 720.70117648351 89.573 0.46324 89.573 89.377 89.841 0 32 15 3 0.894462348824037 0.00030491709734995 0.00304762355539668 0.00023589 1 20884 109.35 83.634 1 7311600 6630.2 7634 7734.6 7062.2 8817.4 8530.5 7914.9 8792.6 8853.9 18957 6278.1 7208.3 7736.4 7309.7 8872.2 8524 8125.8 9380.7 8696.3 18054 1 1 1 1 1 1 1 1 1 1 1469 486 1294 1365 1629 1629 FNDSEGDDTEETEDYR 16 Phospho (STY) _FNDS(ph)EGDDTEETEDYR_ FNDS(0.924)EGDDT(0.076)EETEDYR FNDS(10.83)EGDDT(-10.83)EET(-71.81)EDY(-150.35)R 0 0 1 0 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1116.42980957031 2 1001.34711 2000.67967 30282.9529894473 0.84995 0.00085109 114430 114.58 114430 114.58 1116.42991924026 53.251 0.8561 53.251 53.118 53.974 0 50 28 2 0.953108534372924 0.000676289897629166 0.0106470574567764 4.6109E-31 1 12410 292.45 257.54 4 16725000 7810.3 7343 7808.7 6592.5 5538.9 8900.6 6127.3 7062.5 7995.9 8619.9 7390.6 6932.4 7836.4 6851.9 5765 8811.7 6260 7415.2 7810.3 8280.1 1 1 1 1 1 1 1 1 1 1 1470 2072 1295 1366 1630 1630 3747 FNGGHSPTHSPEK 13 2 Phospho (STY) _FNGGHS(ph)PTHS(ph)PEK_ FNGGHS(0.99)PT(0.026)HS(0.985)PEK FNGGHS(19.82)PT(-18.02)HS(18.02)PEK 0 0 2 0 Q9Y5K6 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.641418457031 3 518.863989 1553.57014 38415.613839563 1.612 0.00083638 294440 152.78 294440 152.78 671.639257208379 37.534 0.72758 37.534 37.396 38.123 0 68 25 3 0.972653681454285 0.00226146812259899 0.00554733508634554 0.00014019 1 8487 116.9 77.373 3 45731000 12677 30436 12394 31890 17773 15479 17422 20472 35308 8286.1 11994 28760 12562 32391 17731 16326 18241 20592 34079 8276.1 1 1 1 1 1 1 1 1 1 1 1471 2295 1296 1367 1631 1631 4236;4237 FNPDGEEEDVTVQE 14 Unmodified _FNPDGEEEDVTVQE_ 0 0 0 0 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 918.926391601563 2 804.339014 1606.66348 31476.1979730691 1.2472 0.0010031 142450 114.58 142460 114.58 918.920270899028 65.956 0.33313 65.956 65.807 66.14 0 25 10 3 0.971813551174243 0.00164417095357501 0.061705111274549 7.8004E-10 1 15480 186.81 159.04 1 23046000 8610.8 9968.9 8630.1 8818.5 8956.2 8878.4 9558.5 9569.4 9507.9 14377 8148.1 9410.7 8694 9125.7 9078 8932.3 9699.4 10005 9383.6 13759 1 1 1 1 1 1 1 1 1 1 1472 1180 1297 1368 1632 1632 FPEFCSSPSPPVEVK 15 Phospho (STY) _FPEFCSSPS(ph)PPVEVK_ FPEFCS(0.002)S(0.027)PS(0.971)PPVEVK FPEFCS(-26)S(-15.63)PS(15.63)PPVEVK 0 0 1 0 Q68E01 Q68E01 Q68E01 INTS3 Integrator complex subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.038940429688 3 596.263439 1785.76849 36212.190746336 1.7314 0.0010324 256220 152.78 256220 152.78 749.038314263074 91.037 0.63361 91.037 90.65 91.283 0 71 21 4 0.979298937484228 0.00120047393732017 0.0294591107861015 0.00010186 1 21142 115.98 96.903 3 24512000 5427.8 4933.3 4886.9 5885.4 5405.3 5425.4 5652.6 6352.7 5484.1 17654 5134.1 4665.8 4958.7 5977.4 5458 5503.6 5737.4 6868.2 5418.3 16770 1 1 1 1 1 1 1 1 1 1 1473 1229 1298 1369 1633 1633 2168 FPFGISPAQSHR 12 Phospho (STY) _FPFGIS(ph)PAQSHR_ FPFGIS(1)PAQSHR FPFGIS(47.09)PAQS(-47.09)HR 0 0 1 0 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.944213867188 3 475.222126 1422.64455 42651.0561510223 1.6582 0.00078801 160740 76.388 160740 76.388 551.609567820463 81.553 0.83363 81.553 81.194 82.028 0 80 28 3 0.935092625852748 0.0012341903881715 0.0102565382398516 0.00013664 1 19085 105.17 84.394 2 13602000 3318.2 3652.5 3575.6 4384.1 3162.6 3184.1 3652.5 3911.9 4397.8 2887.3 3140.9 3454.5 3581.5 4437.5 3241.4 3259.7 3714.9 3982.7 4307.7 2809.3 1 1 1 1 1 1 1 1 1 1 1474 57 1299 1370 1634 1634 83 FPLRMSR 7 Phospho (STY) _FPLRMS(ph)R_ FPLRMS(1)R FPLRMS(44.98)R 0 0 1 1 O43709 O43709 O43709 WBSCR22 Probable 18S rRNA (guanine-N(7))-methyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.318359375 2 493.735712 985.456872 39795.0985600202 1.7729 0.00087534 232070 114.58 232070 114.58 608.317484242827 67.921 1.0562 67.921 67.587 68.643 0 85 35 3 0.771046357394623 0.00200818151475145 0.07858844175106 0.056604 1 15958 44.98 19.087 1 13339000 7431.5 14667 7669 13615 7998.3 7763.2 7256.7 9446.3 16115 4644.5 7033 13849 7711.3 13949 8095.1 8072.5 7664.9 9550 15525 4592 1 1 1 1 1 1 1 1 1 1 1475 123 1300 1371 1635 1635 210 FPPEDFRHSPEDFR 14 Phospho (STY) _FPPEDFRHS(ph)PEDFR_ FPPEDFRHS(1)PEDFR FPPEDFRHS(129.46)PEDFR 0 0 1 1 Q8IXT5 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.653137207031 3 619.264831 1854.77266 37491.5964194114 1.6063 0.00099472 123350 76.387 123350 76.388 695.986507111373 66.377 3.4707 66.377 64.684 68.154 0 315 118 4 0.92756352796636 0.00288782123594005 0.0722460400527373 4.6526E-05 3 15566 129.46 100.38 1 22299000 35410 36125 33162 37038 30950 38290 30782 36628 38334 27932 33498 34131 33494 37994 31544 38356 31548 37646 37504 27149 3 3 3 3 3 3 3 3 3 3 1476 1429 1301 1372 1636;1637;1638 1637 2605 FPPEDFRHSPEDFR 14 Phospho (STY) _FPPEDFRHS(ph)PEDFR_ FPPEDFRHS(1)PEDFR FPPEDFRHS(94.97)PEDFR 0 0 1 1 Q8IXT5 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.653259277344 3 619.264831 1854.77266 NaN NaN NaN NaN NaN NaN NaN NaN 68.083 1 68.083 67.583 68.583 0 NaN NaN NaN 0.0061081 1 15987 94.973 68.499 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1477 1429 1301 1372 1639 1639 2605 FPQGPPSQMGSPMGSR 16 Phospho (STY) _FPQGPPSQMGS(ph)PMGSR_ FPQGPPSQMGS(0.933)PMGS(0.066)R FPQGPPS(-33.84)QMGS(11.49)PMGS(-11.49)R 0 0 1 0 Q8WXF1 Q8WXF1 Q8WXF1 PSPC1 Paraspeckle component 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.634338378906 3 580.912635 1739.71608 40219.9391223162 1.7827 0.0010356 131490 76.387 131500 76.388 657.63401855696 67.618 0.55666 67.618 67.299 67.855 0 43 18 3 0.787743865134896 0.00123453229361906 0.0348194012112579 0.00013061 1 15885 101.71 81.611 3 6034400 5178.5 5740.1 6245.5 5513.7 6443 6235.8 6732.1 6175.7 5930.1 7549.7 4904.2 5421.2 6230.5 5686.7 6530.1 6231.7 6816.8 6424.5 5885.3 7251.9 1 1 1 1 1 1 1 1 1 1 1478 1580 1302 1373 1640 1640 2906 FPQLRLSQK 9 Phospho (STY) _FPQLRLS(ph)QK_ FPQLRLS(1)QK FPQLRLS(75.04)QK 0 0 1 1 Q9ULX3 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.319458007813 3 399.544429 1195.61146 42942.0040593561 2.0825 0.00083206 382370 152.78 382380 152.78 552.319506148849 79.272 0.86701 79.272 78.865 79.732 1.4211E-14 71 29 3 0.848147302505291 0.00182477305384392 0.0531583665282047 0.0081524 1 18585 75.045 42.547 1 14176000 6972.7 7988.5 6347 8066.2 6013.2 7006.2 5712.9 7591.2 9139.1 1957.1 6595.6 7546.9 6422.4 8260.3 6120.9 7081 5923.5 7650.8 8872.2 2018.5 1 1 1 1 1 1 1 1 1 1 1479 2194 1303 1374 1641 1641 3974 FPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG 34 Unmodified _FPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG_ 0 0 0 0 P55072 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1150.82788085938 3 1074.11184 3219.3137 28375.6002166284 1.4199 0.0015252 71117 76.388 71119 76.389 1150.83282687615 72.333 0.97144 72.333 71.895 72.867 1.4211E-14 165 32 6 0.977603514205716 0.00481791519901217 0.031139459781793 0.00070315 1 16907 98.883 82.129 1 111900000 2930.4 3637.2 3204.1 3062.2 3993.8 3636.3 4335.5 4826.3 3033.6 40858 2773.9 3432.7 3220.9 3188.5 4009.9 3711.1 4361.1 6026.2 3048.5 38585 1 1 1 1 1 1 1 1 1 1 1480 718 1304 1375 1642 1642 FPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG 34 Unmodified _FPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG_ 0 0 0 0 P55072 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1151.49743652344 3 1074.11184 3219.3137 28920.5348649288 1.3476 0.0014475 71115 76.385 71116 76.387 1151.50001907262 73.093 0.57597 73.093 72.809 73.384 0 40 19 3 0.712757111836197 0.000594588006769706 0.0118326229878753 0.0073917 1 17124 73.817 67.018 1 14972000 1656.6 1619.6 2364.5 1785.7 2239.5 1794.7 2688.4 2081.3 2658.3 24921 1570.3 1531 2339.5 1823.5 2286.3 1849 2714.1 2827.5 2624.2 23515 1 1 1 1 1 1 1 1 1 1 1481 718 1304 1375 1643 1643 FPSSGPVTPQPTALTFAK 18 Phospho (STY) _FPSSGPVT(ph)PQPTALTFAK_ FPS(0.001)S(0.003)GPVT(0.997)PQPTALTFAK FPS(-32.48)S(-25.79)GPVT(25.79)PQPT(-52.18)ALT(-94.24)FAK 0 0 1 0 Q9Y679 Q9Y679 Q9Y679 AUP1 Ancient ubiquitous protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.758728027344 3 642.651803 1924.93358 35232.8478434525 2.2248 0.0014297 237730 152.78 237730 152.78 795.761194025453 92.977 0.58599 92.977 92.715 93.301 1.4211E-14 55 19 4 0.960001956072065 0.00101665416698235 0.0134931331044156 1.8554E-05 1 21629 132.48 107.94 5 8927200 3835.8 7454 3662.2 7342.6 5654.6 3892.1 5017.6 6697.1 8649.2 18452 3629 7040.9 3720.8 7490.5 5615.1 4125.2 5237.5 7165 8380.1 17530 1 1 1 1 1 1 1 1 1 1 1482 2309 1305 1376 1644 1644 4857 FQDLSEGSSISQLSFAEDISADEDDQILSQGK 32 Phospho (STY) _FQDLSEGSSISQLSFAEDIS(ph)ADEDDQILSQGK_ FQDLSEGSSISQLSFAEDIS(1)ADEDDQILSQGK FQDLS(-115.5)EGS(-96.97)S(-90.12)IS(-77.66)QLS(-50.51)FAEDIS(50.51)ADEDDQILS(-69.87)QGK 0 0 1 0 Q14684 Q14684 Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1333.96728515625 3 1180.52435 3538.55123 27546.8558538369 1.884 0.0022241 129410 152.77 129410 152.78 1333.96558290087 100.39 0.33485 100.39 100.28 100.62 1.4211E-14 28 11 5 0.951880790706281 0.00198699155724238 0.0206688445160683 2.3087E-12 1 23478 200.91 184.51 7 68238000 1970.2 4984.6 2234.3 3919.4 1545.7 3160.5 1951.9 8514.4 5057.3 140890 1865.3 4702.7 2226.9 4077.2 1617.9 3534.3 2052.4 12578 4858.4 132860 1 1 1 1 1 1 1 1 1 1 1483 1020 1306 1377 1645 1645 1739 FQETEFLSPPR 11 Phospho (STY) _FQETEFLS(ph)PPR_ FQETEFLS(1)PPR FQET(-41.23)EFLS(41.23)PPR 0 0 1 0 P42166 P42166 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.404541015625 2 715.821225 1429.6279 34134.0493239469 1.8227 0.0013047 160070 114.58 160070 114.58 830.402927823556 83.032 1.1235 83.032 82.23 83.353 0 50 38 2 0.975562527472784 0.000601008273842059 0.00526148796583146 0.0090369 1 19395 84.734 63.227 2 8313700 6059.3 10146 6538 10171 7183 5765.8 7013.7 8645.1 11271 21475 5735.5 9585.1 6563.5 10371 7252.9 6052.5 7264.1 9207.2 10941 20422 1 1 1 1 1 1 1 1 1 1 1484 581 1307 1378 1646 1646 934 FQSDSSSYPTVDSNSLLGQSR 21 Phospho (STY) _FQSDSSSYPTVDSNS(ph)LLGQSR_ FQSDSSSYPTVDS(0.026)NS(0.974)LLGQSR FQS(-113.94)DS(-106.24)S(-101.13)S(-95.8)Y(-91.33)PT(-60.88)VDS(-15.7)NS(15.7)LLGQS(-35.87)R 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.063293457031 3 785.676064 2354.00636 34658.7623571089 1.9089 0.0014998 97225 76.387 97227 76.389 862.398351062203 75.392 0.44991 75.392 75.149 75.599 0 47 15 4 0.937370617583193 0.0028639553324536 0.172900181700232 8.6234E-08 1 17689 149.16 128.42 9 12890000 4477 6096.7 4804.7 4746.6 4509.7 4483.8 5299.3 5579.6 5922.7 14673 4237.6 5751.6 4817.1 4951.9 4605.7 4547.4 5373.4 5996.4 5817.5 13945 1 1 1 1 1 1 1 1 1 1 1485 2226 1308 1379 1647 1647 4046 FQSLGVAFYR 10 Phospho (STY) _FQS(ph)LGVAFYR_ FQS(1)LGVAFYR FQS(92.59)LGVAFY(-92.59)R 0 0 1 0 P51149 P51149 P51149 RAB7A Ras-related protein Rab-7a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.879089355469 2 634.297188 1266.57982 35803.0011835187 1.8449 0.0011702 180640 114.58 180640 114.58 748.878295957001 96.728 0.51825 96.728 96.462 96.98 0 39 17 3 0.895421547356186 0.0013385902867243 0.0170290102903665 7.844E-07 1 22471 168.76 137.34 2 8450300 12239 3736 13241 3714.5 2898.7 15489 3716.4 7341.7 4228.5 19953 11585 3529.1 13150 4004.4 3564.3 14935 3757.7 8281.2 4150.6 18958 1 1 1 1 1 1 1 1 1 1 1486 676 1309 1380 1648 1648 1133 FQSPQIQATISPPLQPK 17 Phospho (STY) _FQSPQIQATIS(ph)PPLQPK_ FQSPQIQATIS(1)PPLQPK FQS(-85.76)PQIQAT(-34.11)IS(34.11)PPLQPK 0 0 1 0 Q7Z478 Q7Z478 Q7Z478 DHX29 ATP-dependent RNA helicase DHX29 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.780212402344 3 654.002836 1958.98668 35264.7535792901 1.6937 0.0011077 233600 152.78 233610 152.78 807.116011732995 85.193 1.0669 85.193 84.552 85.618 0 116 36 4 0.818642868613413 0.00754740727829955 0.178154057552363 1.1175E-10 1 19856 179.03 146.1 3 46144000 10612 10572 7844.8 10110 9315.4 9447 9006.1 10782 11606 37973 10032 9984.8 8075.8 10398 9364.5 9587 9253.5 11907 11341 36006 1 1 1 1 1 1 1 1 1 1 1487 1339 1310 1381 1649 1649 2419 FQTGNKSPEVLR 12 Phospho (STY) _FQTGNKS(ph)PEVLR_ FQT(0.162)GNKS(0.838)PEVLR FQT(-7.15)GNKS(7.15)PEVLR 0 0 1 1 Q96S66 Q96S66 Q96S66 CLCC1 Chloride channel CLIC-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.680541992188 3 485.904574 1454.69189 39812.3094508498 2.1325 0.0010362 314410 152.77 314420 152.78 638.679262982722 59.323 0.57334 59.323 59.075 59.649 0 59 19 4 0.969703960803611 0.0050643719609722 0.165164183517825 0.0032954 1 13887 91.653 45.929 2 33621000 10079 21131 10467 22395 17637 8942.1 16939 17880 24136 2883.9 9539.1 19969 10603 22701 17472 9681 17473 17675 23510 3129.3 1 1 1 1 1 1 1 1 1 1 1488 1745 1311 1382 1650 1650 3201 FRDQDLASCDR 11 Phospho (STY) _FRDQDLAS(ph)CDR_ FRDQDLAS(1)CDR FRDQDLAS(144.88)CDR 0 0 1 1 Q9Y383 Q9Y383 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.374877929688 2 731.792672 1461.57079 34431.5880823734 1.7869 0.0013077 156580 114.58 156580 114.58 846.374744232584 44.614 0.49025 44.614 44.398 44.889 -7.1054E-15 40 16 3 0.967055541171411 0.00077315432254615 0.0184672696479327 1.0626E-06 1 10256 144.88 121.13 1 10740000 13267 14630 11815 13730 23113 12271 24548 17204 14541 15689 12548 13816 12122 14129 22799 12457 24645 17538 14772 15171 1 1 1 1 1 1 1 1 1 1 1489 2262 1312 1383 1651 1651 4191 FRFPSGAEL 9 Phospho (STY) _FRFPS(ph)GAEL_ FRFPS(1)GAEL FRFPS(72.28)GAEL 0 0 1 1 Q8IU68 Q8IU68 Q8IU68 TMC8 Transmembrane channel-like protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.832641601563 2 552.249707 1102.48486 38826.3098241925 2.0641 0.0011399 207480 114.58 207480 114.58 666.831422292097 96.147 0.58319 96.147 95.792 96.375 0 32 19 2 0.714470042324315 0.00105344546150234 0.0614085357901954 0.013697 1 22348 72.276 59.749 1 5406500 3485.6 3964 3662.6 3479.5 11429 3499.8 13511 6577.6 3952.4 7524 3298.9 3741.9 3776.9 3602.5 11160 3559.8 13391 6705.2 4305.3 7237 1 1 1 1 1 1 1 1 1 1 1490 1406 1313 1384 1652 1652 2558 FRRSETPPHWR 11 2 Phospho (STY) _FRRS(ph)ET(ph)PPHWR_ FRRS(1)ET(1)PPHWR FRRS(55.82)ET(55.82)PPHWR 0 0 2 2 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.956787109375 3 543.567618 1627.68103 39970.3344420682 1.1036 0.00059988 140530 76.388 140530 76.388 620.289564054061 48.632 2.15 48.632 47.862 50.012 0 164 73 3 0.970465462116887 0.00171608899955983 0.020469227276324 0.050947 1 11203 55.815 41.658 1 37748000 11102 14738 10219 14380 13124 11484 11806 12221 12599 5297.3 10502 13920 10373 14741 13129 11659 12102 12389 12397 5270.9 1 1 1 1 1 1 1 1 1 1 1491 952 1314 1385 1653 1653 1587;4533 FRTPSFLK 8 Phospho (STY) _FRTPS(ph)FLK_ FRT(0.024)PS(0.976)FLK FRT(-16.09)PS(16.09)FLK 0 0 1 1 P35611;P35612;Q9UEY8 P35611;P35612;Q9UEY8 P35611 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 511.958374023438 3 359.18272 1074.52633 43913.7190114852 1.5023 0.0005396 425340 152.78 425340 152.78 511.957735375189 82.163 0.94429 82.163 81.682 82.626 -1.4211E-14 94 32 4 0.920575112060254 0.00168428350512488 0.0406738251168342 0.01002 1 19165 73.435 28.076 2 21178000 6618.7 6141.8 6627.7 4694.1 4558.9 6829 4656.5 6630.5 5843.9 3836.8 6263 5793.7 6648 4942.4 4751 6754.5 4767.7 6774.2 5715.8 3766.2 1 1 1 1 1 1 1 1 1 1 1492 549;550;2136 1315 1386 1654 1654 890 FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP 31 Oxidation (M),Phospho (STY) _FSAVLVEPPPM(ox)SLPGAGLS(ph)SQELSGGPGDGP_ FSAVLVEPPPM(1)SLPGAGLSSQELSGGPGDGP FSAVLVEPPPMS(0.119)LPGAGLS(0.423)S(0.423)QELS(0.036)GGPGDGP FSAVLVEPPPM(71.53)SLPGAGLSSQELSGGPGDGP FS(-45.57)AVLVEPPPMS(-5.52)LPGAGLS(0)S(0)QELS(-10.74)GGPGDGP 0 1 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.899841308594 4 762.358335 3045.40423 34510.4912057808 1.417 0.0010803 75149 57.291 75151 57.292 819.899975080826 101.74 0.42832 101.74 101.56 101.99 0 72 14 7 0.985361947025454 0.00779193202096787 0.0768234346124987 0.01024 1 23913 71.528 50.935 5 200050000 5750.4 6419.1 3670 6841.1 13647 4785.2 14122 10907 5782.2 26399 5433.6 6066.3 3938.1 6965.4 13259 5014.6 14124 11499 6059 25110 1 1 1 1 1 1 1 1 1 1 1493 942 1316 1387 1655 1655 124 1558;1559 FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP 31 Unmodified _FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP_ 0 0 0 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.909362792969 4 738.368024 2949.44299 36578.7415498886 1.284 0.0009481 77591 57.29 77592 57.291 796.160802575626 101.76 0.25978 101.76 101.58 101.84 -1.4211E-14 30 8 6 0.91423764692739 0.00394799781077226 0.0901106963596525 0.052136 1 23957 36.3 21.818 1 31763000 3935.2 4323.6 6029.2 5894.8 6018 4992.5 5892.6 6685 4828.2 33156 3731.6 4093.3 5950.3 5942.2 6104.9 5128.2 5975 7639 4809.1 31375 1 1 1 1 1 1 1 1 1 1 1494 942 1316 1388 1656 1656 FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP 31 Phospho (STY) _FSAVLVEPPPMSLPGAGLS(ph)SQELSGGPGDGP_ FSAVLVEPPPMS(0.007)LPGAGLS(0.446)S(0.446)QELS(0.102)GGPGDGP FS(-47.68)AVLVEPPPMS(-17.96)LPGAGLS(0)S(0)QELS(-6.41)GGPGDGP 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1087.86364746094 3 1010.81038 3029.40932 30226.306451484 1.3485 0.0013631 75571 76.388 75572 76.389 1087.53198764538 102.99 0.88729 102.99 102.8 103.69 -1.4211E-14 120 30 8 0.962808535543647 0.00846641728796093 0.0679526779506602 0.010915 1 24257 66.593 53.694 5 176840000 6148.9 7298.7 6308.6 7400.3 10891 5947 11707 8261.8 8629.9 70573 5819 6895.4 6400.8 7568.9 10790 6187.8 11793 10324 8645.7 66644 1 1 1 1 1 1 1 1 1 1 1495 942 1316 1389 1657 1657 1558;1559 FSCPPNFTAKPPASESPR 18 Phospho (STY) _FSCPPNFTAKPPASES(ph)PR_ FSCPPNFTAKPPAS(0.046)ES(0.954)PR FS(-108.52)CPPNFT(-57.25)AKPPAS(-13.17)ES(13.17)PR 0 0 1 1 O15446 O15446 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.753540039063 3 690.643202 2068.90778 33237.8877452322 1.6934 0.0011695 221210 152.77 221210 152.78 843.751423670259 68.887 0.90336 68.887 68.499 69.402 1.4211E-14 88 30 4 0.968288356379546 0.00138004185572174 0.0133449058047037 5.9677E-06 1 16147 135.58 113.73 4 24839000 18870 20428 19764 21514 13181 18171 13333 18185 23803 13437 17859 19303 19770 21970 13776 18388 13851 18645 23043 13073 1 1 1 1 1 1 1 1 1 1 1496 94 1317 1390 1658 1658 160 FSFRSQEDLNEPIKR 15 Phospho (STY) _FSFRS(ph)QEDLNEPIKR_ FS(0.045)FRS(0.955)QEDLNEPIKR FS(-13.22)FRS(13.22)QEDLNEPIKR 0 0 1 2 Q7Z460 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 602.068481445313 4 487.234649 1944.90949 41108.433906458 1.453 0.00070794 235170 114.58 235170 114.58 602.067129006358 67.524 0.58659 67.524 67.269 67.855 0 56 19 4 0.927044698506929 0.00204058915483636 0.0620591155885726 0.00012255 1 15865 111.49 78.182 2 9551900 3992.9 6742 4294.1 6528.8 8390.7 5073.8 7278.5 6521.9 6413.4 3103.9 3779.5 6367.8 4354.7 6693.2 8256.5 5174.6 7438.6 6579.3 6364.8 3073.6 1 1 1 1 1 1 1 1 1 1 1497 1338 1318 1391 1659 1659 2413 FSGDLDDQTCR 11 Unmodified _FSGDLDDQTCR_ 0 0 0 0 P05455 P05455 P05455 SSB Lupus La protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.857360839844 2 657.274966 1312.53538 35192.5467162315 2.2984 0.0015107 174330 114.58 174330 114.58 771.856216468906 51.32 0.52468 51.32 51.08 51.604 0 64 17 5 0.960262973978426 0.00358503670901341 0.0464402218308499 5.0929E-29 1 11926 291.33 260.59 1 60126000 37544 64376 35229 67942 43649 32328 44341 50764 68972 88828 35518 60834 35711 68971 43831 34392 45776 52882 67010 84817 1 1 1 1 1 1 1 1 1 1 1498 305 1319 1392 1660 1660 FSGGFGAR 8 Phospho (STY) _FS(ph)GGFGAR_ FS(1)GGFGAR FS(98.73)GGFGAR 0 0 1 0 O00571;O15523 O00571 O00571 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 554.26220703125 2 439.68146 877.348367 42363.1016338646 1.9506 0.00085764 260600 114.58 260600 114.58 554.262479042254 63.272 0.64368 63.272 62.99 63.633 7.1054E-15 62 21 4 0.980635524459649 0.00166954796710089 0.0668117116092042 0.0030194 1 14829 98.73 54.011 1 40201000 9608.7 12743 10619 14586 11131 10670 11730 12172 13500 2699.1 9096.1 12048 10642 14801 11276 10894 11959 12233 13245 2823.2 1 1 1 1 1 1 1 1 1 1 1499 56 1320 1393 1661 1661 81 FSKEEPVSSGPEEAVGK 17 Phospho (STY) _FSKEEPVSS(ph)GPEEAVGK_ FSKEEPVS(0.212)S(0.788)GPEEAVGK FS(-51.17)KEEPVS(-5.71)S(5.71)GPEEAVGK 0 0 1 1 O00567 O00567 O00567 NOP56 Nucleolar protein 56 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 848.779968261719 3 619.615306 1855.82409 33142.0014999366 1.7342 0.0010746 369850 229.16 369850 229.16 849.112874477878 64.617 0.7822 64.617 64.271 65.054 0 77 26 4 0.937848636472661 0.000878446800403081 0.0134888680387922 3.2046E-07 1 15228 147.41 130.72 3 18029000 8942.2 13912 8057.5 13788 9378.3 8615.1 8609.9 12445 15491 20288 8458.3 13142 8179 14082 9434.8 8952.5 8989.5 12946 14993 19392 1 1 1 1 1 1 1 1 1 1 1500 54 1321 1394 1662 1662 79 FSPGAPGGSGSQPNQK 16 Phospho (STY) _FS(ph)PGAPGGSGSQPNQK_ FS(1)PGAPGGSGSQPNQK FS(63.25)PGAPGGS(-63.25)GS(-114.37)QPNQK 0 0 1 0 Q15942 Q15942 Q15942 ZYX Zyxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.34130859375 3 532.56651 1594.6777 36522.2347026815 0.93746 0.00049926 286870 152.78 286870 152.78 685.341943029944 51.671 0.64077 51.671 51.431 52.072 0 57 21 4 0.8704687976368 0.00094487726493816 0.00461474255676379 1.3884E-10 1 11992 180.32 166.57 3 64134000 14617 12699 14102 12160 11461 15592 13525 14386 13141 5969.6 13830 11993 14201 12573 11816 15472 13658 14657 12982 5954.1 1 1 1 1 1 1 1 1 1 1 1501 1099 1322 1395 1663 1663 1903;1904 FSPGAPGGSGSQPNQK 16 Phospho (STY) _FSPGAPGGSGS(ph)QPNQK_ FSPGAPGGS(0.01)GS(0.99)QPNQK FS(-68.3)PGAPGGS(-20.12)GS(20.12)QPNQK 0 0 1 0 Q15942 Q15942 Q15942 ZYX Zyxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.678649902344 3 532.56651 1594.6777 37953.1572542141 1.3303 0.00070848 286870 152.78 286870 152.78 685.676442533289 52.698 0.35087 52.698 52.52 52.87 0 21 11 2 0.744099272261131 0.00106998358696584 0.0116933591046828 0.00011351 1 12283 106.57 87.247 3 12222000 9088.7 8442.9 9285.7 9228.7 12956 9885.9 15007 10447 9580.1 6436 8601 7980.1 9387.6 9438.4 12955 9899 15029 10651 9682.9 6302 1 1 1 1 1 1 1 1 1 1 1502 1099 1322 1395 1664 1664 1903;1904 FSPPRHELSPPQKR 14 2 Phospho (STY) _FS(ph)PPRHELS(ph)PPQKR_ FS(1)PPRHELS(1)PPQKR FS(76.18)PPRHELS(76.18)PPQKR 0 0 2 2 Q9BXP5 Q9BXP5 Q9BXP5 SRRT Serrate RNA effector molecule homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.29541015625 4 459.714297 1834.82808 41268.8872177175 1.1837 0.00054414 249250 114.58 249250 114.58 574.29552978989 55.679 1.404 55.679 54.782 56.186 0 149 47 4 0.810860417720014 0.00158027260291149 0.0135143701426487 0.011759 1 12893 76.176 41.899 1 26535000 7090.8 6201 6723.4 7894.8 8059.9 6223.5 8640.7 7758.6 6604.4 2762.4 6708.3 5867.5 6808.6 7975.9 8106.5 6337.2 8711.8 7806.2 6603 2780.7 1 1 1 1 1 1 1 1 1 1 1503 1865 1323 1396 1665 1665 3399;3401 FSPPSPLPQAVFSTSSR 17 Phospho (STY) _FSPPS(ph)PLPQAVFSTSSR_ FS(0.168)PPS(0.832)PLPQAVFSTSSR FS(-6.96)PPS(6.96)PLPQAVFS(-54.44)T(-54.2)S(-54.2)S(-54.2)R 0 0 1 0 Q99594 Q99594 Q99594 TEAD3 Transcriptional enhancer factor TEF-5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.359985351563 3 628.967903 1883.88188 36223.4109705063 1.8477 0.0011622 121450 76.388 121450 76.389 705.690568758561 93.148 0.61722 93.148 92.715 93.332 0 50 20 3 0.966988300324698 0.00143233982463508 0.0192469233937656 0.014164 1 21675 63.726 49.374 6 8023000 3503.9 3001.5 3342.7 3723.3 4007.6 3842.6 4488.3 3043.2 3846.4 11401 3315 2839.5 3384.2 3780.8 4033.9 3857.8 4528.1 3427.1 3822.5 10805 1 1 1 1 1 1 1 1 1 1 1504 1775 1324 1397 1666 1666 3275 FSPTMGR 7 Phospho (STY) _FS(ph)PTMGR_ FS(0.963)PT(0.037)MGR FS(14.17)PT(-14.17)MGR 0 0 1 0 P78344 P78344 P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.759826660156 2 438.177696 874.340839 42160.7490861695 1.5074 0.00066053 261490 114.58 261500 114.58 552.759233076419 57.41 0.80318 57.41 57.044 57.847 0 107 27 5 0.997569420909079 0.0107809625092062 0.3321176862473 5.6693E-06 1 13407 172.25 128.8 2 115600000 50993 52633 50254 46174 47857 50025 45755 47864 52339 245.82 48250 49684 50612 47866 48684 49944 46856 48102 51363 1339.2 1 1 1 1 1 1 1 1 1 1 1505 796 1325 1398 1667 1667 1271 FSPVLGR 7 Phospho (STY) _FS(ph)PVLGR_ FS(1)PVLGR FS(141.2)PVLGR 0 0 1 0 Q9NRG9 Q9NRG9 Q9NRG9 AAAS Aladin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.791687011719 2 428.209853 854.405154 42614.1038113514 1.1395 0.00048795 267580 114.58 267580 114.58 542.791404438926 73.351 1.3753 73.351 72.955 74.33 0 134 47 5 0.998314133074925 0.00191801496258463 0.0862660374423246 5.1983E-05 1 17160 141.2 96.114 1 347070000 13551 16736 12912 15909 15512 10362 16432 15895 16346 5471.5 12820 15805 13072 16296 15601 10713 16680 15894 16132 5519.9 1 1 1 1 1 1 1 1 1 1 1506 2016 1326 1399 1668 1668 3665 FSPVTPK 7 Phospho (STY) _FS(ph)PVTPK_ FS(1)PVTPK FS(47.3)PVT(-47.3)PK 0 0 1 0 Q15942 Q15942 Q15942 ZYX Zyxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.369384765625 2 428.204237 854.393921 38027.7829677066 2.2742 0.00097383 535170 229.16 535170 229.16 657.367106721899 66.076 0.65586 66.076 65.748 66.403 0 74 21 5 0.94615539619213 0.00239284861182583 0.0833894431278498 0.00085676 1 15477 125.82 95.149 2 205340000 26150 19460 25472 19004 24363 22310 25216 23078 19248 8311.1 24742 18381 25676 19594 24796 22240 25463 23369 19245 8360 1 1 1 1 1 1 1 1 1 1 1507 1099 1327 1400 1669 1669 1905 FSSPAANELK 10 2 Phospho (STY) _FS(ph)S(ph)PAANELK_ FS(1)S(1)PAANELK FS(42.21)S(42.21)PAANELK 0 0 2 0 REV__Q9Y5G7 REV__Q9Y5G7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.270141601563 3 408.496355 1222.46724 41872.8402670599 2.0673 0.00084447 373990 152.77 373990 152.77 561.269466308586 71.945 0.67636 71.945 71.693 72.369 0 74 22 5 0.92045419947568 0.00329670967769164 0.0429257002902954 0.056604 1 16863 42.209 11.337 1 53506000 5596 6964.2 6209.6 6889.1 20522 6820 21749 11522 6120 3533.2 5297.6 6578.4 6395 7077 19983 6904.7 21651 11482 6701.4 3593.6 1 1 1 1 1 1 1 1 1 1 + 1508 2355 1328 1401 1670 1670 4312;4313 FSSPIVK 7 Phospho (STY) _FSS(ph)PIVK_ FS(0.004)S(0.996)PIVK FS(-24.05)S(24.05)PIVK 0 0 1 0 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.376098632813 2 429.212062 856.409571 38904.3808399554 2.408 0.0010335 533920 229.16 533920 229.16 658.374993873635 71.201 0.63567 71.201 70.914 71.549 0 63 21 4 0.951419761428578 0.0026007366366098 0.0979561033406806 4.7936E-05 1 16688 143.91 81.336 2 42756000 22962 36931 24657 37432 16583 22582 16315 26595 42218 8105.9 21734 34890 24632 38165 17326 23364 17329 26766 40557 8248.2 1 1 1 1 1 1 1 1 1 1 1509 654 1329 1402 1671 1671 1086 FSTYSQSPPDTPSLR 15 Phospho (STY) _FSTYSQS(ph)PPDTPSLR_ FSTYSQS(1)PPDTPSLR FS(-69.02)T(-53)Y(-120.73)S(-36.63)QS(36.63)PPDT(-75.76)PS(-93.99)LR 0 0 1 0 Q6ZS17 Q6ZS17 Q6ZS17 FAM65A Protein FAM65A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 996.471069335938 2 881.887824 1761.7611 32464.3956805168 1.9374 0.0017086 129930 114.58 129930 114.58 996.469207832841 69.113 0.63391 69.113 68.855 69.489 0 46 21 3 0.693641747085265 0.000486086472234223 0.0113877257123623 1.2419E-22 1 16215 265.43 189.1 7 14259000 6364.6 10332 6273.4 9208.1 11337 6766.9 13314 10671 9870.5 20657 6022.2 9754.3 6387.9 9484 11230 6979.6 13363 11175 9885.2 19698 1 1 1 1 1 1 1 1 1 1 1510 1297 1330 1403 1672 1672 2316 FTASAGIQVVGDDLTVTNPK 20 Unmodified _FTASAGIQVVGDDLTVTNPK_ 0 0 0 0 P06733 P06733 P06733 ENO1 Alpha-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 831.469543457031 3 678.356505 2032.04769 36126.2082633637 1.4988 0.0010167 225210 152.78 225220 152.78 831.46732194012 91.68 0.6027 91.68 91.452 92.054 0 46 20 4 0.855651685540943 0.00229234003223918 0.0432667659458503 1.0043E-07 1 21367 155.49 131.21 1 11949000 5983.7 6449.2 5761.1 7092.6 5878.3 5221.8 7223.4 7743.6 8712.8 25852 5661.2 6096 5817.9 7213.1 5978.8 5397.9 7329 8448.6 8533.7 24522 1 1 1 1 1 1 1 1 1 1 1511 314 1331 1404 1673 1673 FTDEEVDELYR 11 Unmodified _FTDEEVDELYR_ 0 0 0 0 P19105;O14950 P19105 P19105 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.402770996094 2 708.319896 1414.62524 32692.3000291206 2.0658 0.0014632 161760 114.58 161760 114.58 822.899978783992 76.632 0.49617 76.632 76.387 76.884 0 43 16 3 0.522214048536821 0.00178656694407385 0.0679804822166389 0.026547 1 17964 86.18 69.084 1 27449000 19021 15472 19231 16229 29859 20945 30960 26275 18510 90823 18000 14620 19485 16693 29677 21022 31121 28886 18792 86129 1 1 1 1 1 1 1 1 1 1 1512 72 1332 1405 1674 1674 FTDFDEVRQEIEAETDR 17 Unmodified _FTDFDEVRQEIEAETDR_ 0 0 0 1 P50570 P50570 P50570 DNM2 Dynamin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.379760742188 3 700.655391 2098.94434 37138.5373999843 1.7194 0.0012047 109020 76.388 109020 76.389 777.377008973649 96.38 0.52202 96.38 96.087 96.609 0 37 17 3 0.832083029323823 0.000960140564324475 0.0113936349141824 0.00010384 1 22411 123.19 100.32 1 4021000 3659.3 3493.4 4428.9 3378.6 4860 4012 4479.6 3786 4328.3 14779 3465.6 3299.4 4419.9 3486.2 4900.9 4018.2 4573.9 4251.7 4277.1 14004 1 1 1 1 1 1 1 1 1 1 1513 666 1333 1406 1675 1675 FTDTRKDEQER 11 Phospho (STY) _FT(ph)DTRKDEQER_ FT(1)DTRKDEQER FT(35.91)DT(-35.91)RKDEQER 0 0 1 2 P13639 P13639 P13639 EEF2 Elongation factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.995483398438 3 502.21911 1503.6355 38116.1297075272 1.2027 0.00060401 304200 152.78 304200 152.78 654.994866981151 37.038 2.0992 37.038 36.598 38.697 -7.1054E-15 213 75 6 0.903729883668334 0.0285526075685289 0.428796268835707 0.00027937 2 8343 119.54 86.397 2 359730000 182770 81714 180770 90712 93404 178440 94734 120590 79882 31114 172940 77243 181080 94001 99950 174270 95960 124140 79449 32088 2 2 2 2 2 2 2 2 2 2 1514 378 1334 1407 1676;1677 1676 4393 FTIQLQLSQK 10 Phospho (STY) _FTIQLQLS(ph)QK_ FTIQLQLS(1)QK FT(-41.41)IQLQLS(41.41)QK 0 0 1 0 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.99853515625 3 429.223244 1284.6479 42054.9846953207 1.8034 0.00077408 355930 152.77 355940 152.78 581.998279420766 96.44 0.66327 96.44 96.145 96.808 -1.4211E-14 39 22 3 0.967853308523596 0.00114697174635751 0.0168570833488695 0.00015062 1 22429 117.93 84.136 2 5034500 2448.6 1603.5 2370.8 1685.9 3168.9 2476.7 3311.8 2372.8 1609.4 3661.4 2316.7 1515.3 2401.8 1738.7 3169.1 2452.8 3317.7 2494.4 1660.2 3502.5 1 1 1 1 1 1 1 1 1 1 1515 1180 1335 1408 1678 1678 2043 FTPPSTALSPGK 12 Phospho (STY) _FTPPSTALS(ph)PGK_ FTPPSTALS(1)PGK FT(-91.24)PPS(-48.25)T(-35.08)ALS(35.08)PGK 0 0 1 0 Q01196 Q01196 Q01196 RUNX1 Runt-related transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.9833984375 3 428.207483 1281.60062 41598.8424790026 1.9064 0.00081632 356780 152.78 356780 152.78 580.982743974358 72.711 0.67326 72.711 72.425 73.098 1.4211E-14 78 22 5 0.994320820027088 0.00270230240059174 0.0484171349136023 3.2856E-07 1 17035 145.52 118.92 4 41347000 9661.4 12114 10915 11373 10830 9237.5 13875 11991 13433 3108.7 9146.9 11439 10923 11688 11038 9394.9 13965 12015 13273 3204.8 1 1 1 1 1 1 1 1 1 1 1516 834 1336 1409 1679 1679 1346;4506 FTPVASKFSPGAPGGSGSQPNQK 23 Phospho (STY) _FTPVASKFS(ph)PGAPGGSGSQPNQK_ FTPVAS(0.004)KFS(0.996)PGAPGGSGSQPNQK FT(-34.15)PVAS(-24.48)KFS(24.48)PGAPGGS(-74.44)GS(-103.17)QPNQK 0 0 1 1 Q15942 Q15942 Q15942 ZYX Zyxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.401184082031 4 582.277045 2325.07908 35925.541126304 2.2596 0.0013157 295170 171.87 295170 171.87 754.400016565087 71.89 0.55996 71.89 71.605 72.165 0 70 18 5 0.966978933915178 0.00728877237961659 0.0910704011228803 5.2461E-18 1 16855 240.4 222.15 5 60931000 19254 15853 21404 16944 18315 21693 19456 21344 16863 10912 18227 14982 21393 17407 18782 21548 19679 21752 16748 10769 1 1 1 1 1 1 1 1 1 1 1517 1099 1337 1410 1680 1680 1903;1904 FTSGAFLSPSVSVQECR 17 Phospho (STY) _FTSGAFLS(ph)PSVSVQECR_ FTSGAFLS(0.999)PS(0.001)VSVQECR FT(-38.3)S(-39)GAFLS(29.85)PS(-29.85)VS(-61.72)VQECR 0 0 1 0 P52948 P52948 P52948 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.680541992188 3 651.292169 1950.85468 38078.7295424268 1.4467 0.0009422 117290 76.388 117290 76.389 728.01462676022 85.692 0.53876 85.692 85.419 85.957 0 53 18 4 0.653096601934108 0.00208845515342476 0.0251908543091663 5.9226E-05 1 20004 116.39 98.025 5 12433000 6037.5 6870.3 5674.9 6257.9 6691.8 5208.8 6752.8 5872.2 7020.6 8593.4 5711.7 6486.7 5747.7 6446 6731.9 5292.4 6878.2 6123.5 6915.9 8227.6 1 1 1 1 1 1 1 1 1 1 1518 699 1338 1411 1681 1681 1173 FVAFSGEGQSLR 12 Phospho (STY) _FVAFSGEGQS(ph)LR_ FVAFSGEGQS(1)LR FVAFS(-41.29)GEGQS(41.29)LR 0 0 1 0 Q92890 Q92890 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 803.896484375 2 689.313567 1376.61258 34673.8503401477 2.2224 0.001532 166230 114.58 166230 114.58 803.895567898783 81.84 0.97903 81.84 81.391 82.37 -1.4211E-14 86 33 4 0.806065726048013 0.00297564615739849 0.179295390067066 5.7362E-07 1 19139 144.16 87.222 2 33596000 25380 16602 24510 14706 14805 26342 15893 18112 15400 10775 24013 15673 24614 15403 15612 25801 16112 18811 15216 10565 1 1 1 1 1 1 1 1 1 1 1519 1629 1339 1412 1682 1682 3011 FVAFSGEGQSLRK 13 Phospho (STY) _FVAFSGEGQS(ph)LRK_ FVAFSGEGQS(1)LRK FVAFS(-33.31)GEGQS(33.31)LRK 0 0 1 1 Q92890 Q92890 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.687377929688 3 502.576458 1504.70754 38906.3331230218 1.6842 0.00084645 303980 152.78 303990 152.78 655.686490349136 75.81 0.4577 75.81 75.517 75.975 0 35 15 3 0.952848863002948 0.00229027927717402 0.0187696727375435 0.033105 1 17770 53.362 35.498 2 9241900 11442 8547 13141 9239.3 10256 12031 9824.8 12313 8743 5959.4 10834 8078 13099 9489.2 10571 11949 9991.8 12519 8672.6 5896.5 1 1 1 1 1 1 1 1 1 1 1520 1629 1340 1413 1683 1683 3011 FVLCGTNVK 9 Unmodified _FVLCGTNVK_ 0 0 0 0 Q14765 Q14765 Q14765 STAT4 Signal transducer and activator of transcription 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 499.293548583984 3 346.519794 1036.53755 43951.8154763903 1.0731 0.00037184 440880 152.77 440880 152.77 499.293281232595 31.426 0.63886 31.426 31.152 31.791 0 59 21 4 0.94337714544612 0.0195687514328946 0.249036356482814 0.012502 1 7019 65.347 24.622 1 133150000 46581 66517 45205 63845 63191 43391 56293 64291 72721 2973.1 44072 62821 45805 65389 62982 44673 58083 63769 71057 4287.5 1 1 1 1 1 1 1 1 1 1 1521 1027 1341 1414 1684 1684 FVSEDDRNSFTLK 13 Phospho (STY) _FVSEDDRNS(ph)FTLK_ FVSEDDRNS(0.994)FT(0.006)LK FVS(-36.88)EDDRNS(22.04)FT(-22.04)LK 0 0 1 1 P34932 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.689697265625 3 546.578415 1636.71342 36741.3167935574 2.0489 0.0011199 279510 152.78 279510 152.78 699.688047193422 75.416 0.65577 75.416 75.09 75.746 0 67 22 4 0.918915444664647 0.00586175397774084 0.104911385624541 0.0023295 1 17679 94.973 77.272 3 20701000 13208 17291 12006 17008 13019 13931 12681 15647 20489 10557 12494 16333 12171 17431 13154 14143 13138 15947 19885 10303 1 1 1 1 1 1 1 1 1 1 1522 539 1342 1415 1685 1685 873 FVSEGDGGR 9 Phospho (STY) _FVS(ph)EGDGGR_ FVS(1)EGDGGR FVS(139.98)EGDGGR 0 0 1 0 Q53EL6 Q53EL6 Q53EL6 PDCD4 Programmed cell death protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.780090332031 2 502.197671 1002.38079 39867.2763801163 0.76505 0.0003842 228160 114.58 228160 114.58 616.779011042122 45.441 1.9101 45.441 45.007 46.917 0 185 65 4 0.798763769438237 0.00611909447289534 0.132935128996799 8.607E-06 1 10405 139.98 103.54 1 767130000 90115 42219 94963 38122 55812 87635 64339 66224 35519 3862.8 85290 39859 94880 40188 59043 85370 64293 67373 36269 5170 1 1 1 1 1 1 1 1 1 1 1523 1145 1343 1416 1686 1686 1990 FVSRPPTPK 9 Phospho (STY) _FVSRPPT(ph)PK_ FVS(0.006)RPPT(0.994)PK FVS(-21.93)RPPT(21.93)PK 0 0 1 1 Q15652 Q15652 Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 522.96533203125 3 370.189875 1107.5478 43384.2698103644 1.2003 0.00044436 412690 152.78 412700 152.78 522.965161899291 53.498 0.79633 53.498 53.092 53.888 0 90 26 4 0.902581958375169 0.000800185326777196 0.00546875761380677 0.052041 1 12407 57.136 30.622 2 63187000 26638 12524 29084 10805 7974.2 25190 7310.4 17153 12816 1621.9 25216 11821 28885 11431 9334.4 24509 7624 17566 12412 1924.2 1 1 1 1 1 1 1 1 1 1 1524 1086 1344 1417 1687 1687 4577 FVVDLSDQVAPTDIEEGMR 19 Unmodified _FVVDLSDQVAPTDIEEGMR_ 0 0 0 0 P35998 P35998 P35998 PSMC2 26S protease regulatory subunit 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.064514160156 3 707.677138 2120.00958 35875.0869509021 1.6717 0.001183 107940 76.387 107940 76.388 784.064017593784 98.671 0.31814 98.671 98.488 98.806 0 22 10 3 0.951241776815836 0.00166476835956942 0.0325109169680513 1.3904E-05 1 22894 132.13 109.53 1 10815000 4331.9 5962.1 4394 5867.8 4784.2 4034.2 4266.3 5987.7 4868.9 28831 4099.3 5631.7 4424.8 6001.2 4825.3 4204.4 4384.1 6799.2 4778.6 27286 1 1 1 1 1 1 1 1 1 1 1525 553 1345 1418 1688 1688 FYCDYCDTYLTHDSPSVR 18 Phospho (STY) _FYCDYCDTYLTHDS(ph)PSVR_ FYCDYCDTYLT(0.005)HDS(0.911)PS(0.083)VR FY(-163.25)CDY(-138.44)CDT(-53.53)Y(-98.07)LT(-22.53)HDS(10.38)PS(-10.38)VR 0 0 1 0 P09234 P09234 P09234 SNRPC U1 small nuclear ribonucleoprotein C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 870.363403320313 3 793.641309 2377.9021 34131.0811725244 1.3418 0.0010649 96248 76.387 96250 76.388 870.362698926155 76.146 0.52589 76.146 75.891 76.417 0 58 17 4 0.97653613256682 0.00369519092125199 0.0598097219126465 3.2022E-16 1 17861 235.68 234.25 7 17053000 4010.9 8787 4387.8 8437.8 5486.2 5382.5 5787.5 6741.8 8691.5 24236 3796.8 8298.8 4410.6 8635.9 5509.6 5594.2 5956.2 7440.1 8452.8 22977 1 1 1 1 1 1 1 1 1 1 1526 340 1346 1419 1689 1689 554 FYGDEEKDK 9 Unmodified _FYGDEEKDK_ 0 0 0 1 P27797 P27797 P27797 CALR Calreticulin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.668334960938 3 377.504866 1129.49277 40898.9351919331 2.0028 0.00075608 607050 229.16 607050 229.16 606.668077947886 52.496 0.51622 52.496 52.238 52.755 0 50 17 4 0.970927712670379 0.00328985957510817 0.0483110116278152 0.0008738 1 12211 97.456 59.735 1 24243000 42084 20656 43620 18258 31107 49559 35899 37511 22002 2924 39828 19499 43690 19396 32361 48133 35932 38181 22299 3621.5 1 1 1 1 1 1 1 1 1 1 1527 490 1347 1420 1690 1690 FYPEDVAEELIQDITQK 17 Unmodified _FYPEDVAEELIQDITQK_ 0 0 0 0 P15311 P15311 P15311 EZR Ezrin MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 832.780883789063 3 680.005361 2036.99425 NaN NaN NaN NaN NaN NaN NaN NaN 103.41 1 103.41 102.91 103.91 0 NaN NaN NaN 0.024717 1 24372 74.772 47.436 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1528 395 1348 1421 1691 1691 FYPEDVSEELIQDITQR 17 Unmodified _FYPEDVSEELIQDITQR_ 0 0 0 0 P26038 P26038 P26038 MSN Moesin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.395874023438 3 694.672382 2080.99532 35856.3603317716 1.015 0.00070512 109960 76.388 109960 76.389 771.39490314664 101.52 0.22437 101.52 101.39 101.61 0 27 7 5 0.980537283422435 0.0238431154105892 0.607582318984942 1.3521E-22 1 23877 254.56 238.98 1 123050000 11592 7271.8 12024 8308.6 12497 12818 12356 12608 11190 36309 10971 6875.3 12088 8540.2 12651 12713 12553 13749 11091 34481 1 1 1 1 1 1 1 1 1 1 1529 478 1349 1422 1692 1692 GAAAAATGQPGTAPAGTPGAPPLAGMAIVK 30 Oxidation (M),Phospho (STY) _GAAAAATGQPGTAPAGT(ph)PGAPPLAGM(ox)AIVK_ GAAAAATGQPGTAPAGTPGAPPLAGM(1)AIVK GAAAAATGQPGT(0.001)APAGT(0.999)PGAPPLAGMAIVK GAAAAATGQPGTAPAGTPGAPPLAGM(83.16)AIVK GAAAAAT(-44.65)GQPGT(-29.51)APAGT(29.51)PGAPPLAGMAIVK 0 1 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.668579101563 4 667.834564 2667.30915 35716.4067734019 1.6662 0.0011127 171570 114.58 171570 114.58 782.915316905439 72.893 0.49453 72.893 72.663 73.158 0 57 16 5 0.976461326588409 0.00258195544327675 0.0416606202457068 0.0084394 1 17121 83.159 60.507 3 18234000 5663.3 10325 6094.5 10218 9206.7 5676.7 9778.9 8245.2 9700.8 13926 5360.6 9752.7 6151.2 10425 9167.3 5951.2 9924.5 8590.7 9575 13304 1 1 1 1 1 1 1 1 1 1 1530 942 1350 1423 1693 1693 125 4528 GAAAAATGQPGTAPAGTPGAPPLAGMAIVK 30 Phospho (STY) _GAAAAATGQPGTAPAGT(ph)PGAPPLAGMAIVK_ GAAAAATGQPGTAPAGT(1)PGAPPLAGMAIVK GAAAAAT(-107.75)GQPGT(-58.75)APAGT(58.75)PGAPPLAGMAIVK 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1037.89038085938 3 884.778689 2651.31424 30916.9979030379 1.5543 0.0013752 172670 152.78 172670 152.78 1037.88837738126 88.811 0.48663 88.811 88.596 89.082 0 66 16 5 0.961830690898273 0.00566318061209572 0.0887328726928263 1.0103E-11 1 20702 189.31 164.85 3 28084000 3377.1 7308.4 2949.6 7807.7 7389.9 2274.4 9345.7 6778.5 8862.6 24718 3194 6906.9 3052.7 7897.3 7264.3 2629.8 9406 7369.6 8765.2 23432 1 1 1 1 1 1 1 1 1 1 1531 942 1350 1424 1694 1694 4528 GAAAAATGQPGTAPAGTPGAPPLAGMAIVK 30 Phospho (STY) _GAAAAATGQPGTAPAGT(ph)PGAPPLAGMAIVK_ GAAAAAT(0.001)GQPGT(0.068)APAGT(0.931)PGAPPLAGMAIVK GAAAAAT(-29.92)GQPGT(-11.37)APAGT(11.37)PGAPPLAGMAIVK 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 623.136413574219 5 531.270124 2651.31424 39937.4009844345 1.6417 0.00087221 172540 91.665 172540 91.666 623.135929449588 88.796 0.45886 88.796 88.596 89.055 0 46 15 4 0.968407902212234 0.00217687875118854 0.0161631535317383 0.013763 1 20729 71.506 57.345 3 11221000 2368.5 5654.8 2802.4 5097.2 5043.7 3171.5 5057.5 4806.1 6547.1 3666.7 2242.8 5338.8 2824.4 5236.7 4987.6 3292.3 5188.3 4868 6396.8 3563.9 1 1 1 1 1 1 1 1 1 1 1532 942 1350 1424 1695 1695 4528 GAASPVLQEDHCDSLPSVLQVEEK 24 Phospho (STY) _GAAS(ph)PVLQEDHCDSLPSVLQVEEK_ GAAS(1)PVLQEDHCDSLPSVLQVEEK GAAS(83.84)PVLQEDHCDS(-83.84)LPS(-152.5)VLQVEEK 0 0 1 0 Q8N9B5 Q8N9B5 Q8N9B5 JMY Junction-mediating and -regulatory protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1049.85815429688 3 896.745602 2687.21498 30638.1974734001 1.4348 0.0012867 170370 152.78 170370 152.78 1049.85533074811 84.706 0.48515 84.706 84.439 84.924 1.4211E-14 38 16 4 0.974912415213309 0.00231525085640013 0.0396154013405821 2.8194E-24 1 19804 251.13 235.71 3 9417400 5579.3 4721 5786.8 4838.6 3383.2 7459.7 3854.5 6810.4 3929.1 24349 5280.2 4460.4 5786.5 5003.1 3581.9 7397.9 3903 7590.2 3873.6 23085 1 1 1 1 1 1 1 1 1 1 1533 1487 1351 1425 1696 1696 2736 GAASTLVPGVSETSASPGSPSVR 23 Phospho (STY) _GAASTLVPGVSETSAS(ph)PGSPSVR_ GAASTLVPGVSETS(0.002)AS(0.618)PGS(0.145)PS(0.234)VR GAAS(-137.2)T(-133.39)LVPGVS(-75.18)ET(-36.02)S(-24.17)AS(4.23)PGS(-6.29)PS(-4.23)VR 0 0 1 0 Q6ZRS2 Q6ZRS2 Q6ZRS2 SRCAP Helicase SRCAP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.74169921875 3 732.017762 2193.03146 34069.9310551925 1.8199 0.0013322 104350 76.388 104350 76.389 808.405855739237 67.341 0.5816 67.341 67.005 67.587 1.4211E-14 63 19 5 0.91637734751512 0.00353489922998312 0.105102891886318 1.571E-08 1 15790 168.35 144.16 8 26843000 7926.1 7170.6 7228.7 7641.6 7658.7 7386 6294.4 6484.4 8091.2 9849.4 7497.5 6776.5 7321.7 7813.3 7729.1 7422 6521.9 6836 7907.4 9424.4 1 1 1 1 1 1 1 1 1 1 1534 1295 1352 1426 1697 1697 2312 GADNDGSGSESGYTTPK 17 Phospho (STY) _GADNDGS(ph)GSESGYTTPK_ GADNDGS(0.991)GS(0.009)ESGYTTPK GADNDGS(20.2)GS(-20.2)ES(-66.71)GY(-126.23)T(-125.68)T(-141.34)PK 0 0 1 0 Q7Z417 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.666809082031 3 574.887866 1721.64177 36459.0651475813 2.1204 0.001219 265750 152.78 265750 152.78 727.663265426543 41.442 0.79872 41.442 41.166 41.965 -7.1054E-15 82 27 5 0.856262100962795 0.00335467552928913 0.0335896595243055 6.8066E-08 1 9424 170.02 143.29 6 40328000 14537 11551 14644 14786 15610 12689 17370 16181 15412 5418.3 13756 10930 14755 14951 15807 12866 17543 16258 15290 5476.4 1 1 1 1 1 1 1 1 1 1 1535 1335 1353 1427 1698 1698 2406 GAEASAASEEEAGPQATEPSTPSGPESGPTPASAEQNE 38 Unmodified _GAEASAASEEEAGPQATEPSTPSGPESGPTPASAEQNE_ 0 0 0 0 P49006 P49006 P49006 MARCKSL1 MARCKS-related protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 964.431457519531 4 907.143763 3624.54595 31921.3812281782 1.2514 0.0011352 63155 57.29 63156 57.292 964.935510288413 50.255 0.55088 50.255 49.982 50.533 0 93 18 6 0.973377825690627 0.00167581015450058 0.0181469020522483 8.0653E-09 1 11647 156.9 147.02 1 129350000 5341.9 5684.8 3832.1 6233.3 5589.4 4299.8 6126.1 7068.7 5584.4 45178 5049.2 5373.4 3968 6335.6 5575.5 4516 6195.2 8344.4 5533.1 42704 1 1 1 1 1 1 1 1 1 1 1536 631 1354 1428 1699 1699 GAEETSWSGEER 12 Phospho (STY) _GAEETSWS(ph)GEER_ GAEETSWS(1)GEER GAEET(-64.21)S(-50.36)WS(50.36)GEER 0 0 1 0 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.849060058594 2 709.26701 1416.51947 35044.517612978 1.9768 0.001402 161550 114.58 161550 114.58 823.847848126589 42.944 0.64548 42.944 42.654 43.299 0 66 21 4 0.730592650313538 0.00245207221233604 0.029216667549653 6.4141E-16 1 9790 222.21 190.61 3 94467000 38480 53426 33361 51413 59792 42224 57283 51792 56058 6418.3 36392 50458 34206 52764 59080 42866 58396 51773 55364 7242.2 1 1 1 1 1 1 1 1 1 1 1537 1953 1355 1429 1700 1700 3551 GAESPEKKPACR 12 Phospho (STY) _GAES(ph)PEKKPACR_ GAES(1)PEKKPACR GAES(103.21)PEKKPACR 0 0 1 2 A6NHT5 A6NHT5 A6NHT5 HMX3 Homeobox protein HMX3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.045227050781 3 470.546281 1408.61701 37533.722467985 2.4211 0.0011392 487020 229.16 487020 229.16 699.709560519067 30.827 0.62929 30.827 30.581 31.21 0 43 20 3 0.929599705934883 0.00458646115909845 0.123999160462052 0.00023242 1 6872 103.21 81.962 1 27625000 36041 8545.2 40658 9699.7 9120.7 42531 8197 20142 10237 4044.6 34121 8078.9 40287 10416 11107 40893 8444.1 21193 10014 4274.6 1 1 1 1 1 1 1 1 1 1 1538 10 1356 1430 1701 1701 22 GAESPFEEK 9 Phospho (STY) _GAES(ph)PFEEK_ GAES(1)PFEEK GAES(97.45)PFEEK 0 0 1 0 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.381408691406 2 537.212987 1072.41142 36004.5702789569 1.3126 0.00070512 426580 229.16 426580 229.16 766.376752289929 54.508 0.74723 54.508 54.207 54.955 0 56 25 3 0.984807194365925 0.00076495744279099 0.00866984408803347 0.0026263 1 12688 97.452 61.134 1 37383000 10961 76448 10605 74446 14335 9702.4 11486 33925 85077 12288 10371 72206 10740 75521 14356 12942 13844 33461 80825 12356 1 1 1 1 1 1 1 1 1 1 1539 616 1357 1431 1702 1702 1013 GAGDGSDEEVDGK 13 Phospho (STY) _GAGDGS(ph)DEEVDGK_ GAGDGS(1)DEEVDGK GAGDGS(225.33)DEEVDGK 0 0 1 0 P35579 P35579 P35579 MYH9 Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.402648925781 2 658.237919 1314.46128 33269.5957611329 2.1169 0.0013934 348150 229.16 348150 229.17 887.401926349505 39.104 1.3962 39.104 38.814 40.21 0 125 47 4 0.992006300878848 0.00159495616247176 0.0306800223861234 8.9054E-16 1 8862 225.33 190.55 1 22820000 37733 13990 37282 14548 35853 37917 33943 31089 13321 2700.4 35703 13219 37546 15279 36422 36883 34078 31531 14018 3262.3 1 1 1 1 1 1 1 1 1 1 1540 547 1358 1432 1703 1703 886 GAGGSPVGVEEGLVNVGTGQK 21 Phospho (STY) _GAGGS(ph)PVGVEEGLVNVGTGQK_ GAGGS(1)PVGVEEGLVNVGTGQK GAGGS(178.91)PVGVEEGLVNVGT(-178.91)GQK 0 0 1 0 Q7Z5J4 Q7Z5J4 Q7Z5J4 RAI1 Retinoic acid-induced protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 817.43115234375 3 664.652643 1990.9361 34649.0707708801 2.2101 0.001469 229860 152.78 229860 152.78 817.762197620142 78.021 0.54055 78.021 77.721 78.261 -1.4211E-14 70 18 5 0.980699390296658 0.00348917128957477 0.0304437080957434 2.3884E-17 1 18269 247.22 226.37 2 27179000 13686 11195 14448 13216 11312 14393 9256.9 13375 12635 12328 12953 10587 14462 13465 11639 14385 9614 13827 12324 11918 1 1 1 1 1 1 1 1 1 1 1541 1348 1359 1433 1704 1704 2433 GAGNCPECGTPLRK 14 Phospho (STY) _GAGNCPECGT(ph)PLRK_ GAGNCPECGT(1)PLRK GAGNCPECGT(80.59)PLRK 0 0 1 1 P51948 P51948 P51948 MNAT1 CDK-activating kinase assembly factor MAT1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.669006347656 3 532.893464 1595.65856 38214.0708962096 1.5575 0.00082999 286690 152.77 286690 152.78 685.668578222828 39.877 0.37793 39.877 39.742 40.12 0 25 12 3 0.712633759974917 0.000259348547889382 0.00359077899674822 0.026102 1 9074 80.585 56.744 1 11911000 11990 14691 12473 15571 12634 12592 12992 14429 16635 4178.6 11348 13883 12535 15886 12820 12785 13308 14528 16259 4268.6 1 1 1 1 1 1 1 1 1 1 1542 685 1360 1434 1705 1705 4479 GAGQQQSQEMMEVDR 15 Phospho (STY) _GAGQQQS(ph)QEMMEVDR_ GAGQQQS(1)QEMMEVDR GAGQQQS(221.31)QEMMEVDR 0 0 1 0 Q15435 Q15435 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1002.43383789063 2 887.350226 1772.6859 31344.2645405029 2.2038 0.0019555 129130 114.58 129130 114.58 1001.93177901008 46.07 0.64499 46.07 45.791 46.436 0 68 21 5 0.976151333410955 0.00100610704030407 0.0413096163287854 1.3884E-15 1 10597 221.31 202.48 1 33131000 8376.2 6378.2 9536.6 5292.8 30548 10073 33983 16110 5931.9 3423 7930.4 6019.1 9799.8 5577.5 29781 9965.7 33658 16029 7042.7 3596 1 1 1 1 1 1 1 1 1 1 1543 1077 1361 1435 1706 1706 1866 GAGQQQSQEMMEVDRR 16 Phospho (STY) _GAGQQQS(ph)QEMMEVDRR_ GAGQQQS(1)QEMMEVDRR GAGQQQS(127.49)QEMMEVDRR 0 0 1 1 Q15435 Q15435 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.65869140625 3 643.93628 1928.78701 36090.8628084951 1.5477 0.00099665 118630 76.388 118630 76.389 720.324879113705 40.116 0.49048 40.116 39.861 40.351 0 46 16 5 0.982994677233492 0.00162815855831039 0.00764500338872441 4.6289E-05 1 9112 127.49 114.08 1 28037000 14134 10410 13766 11793 24322 13303 24528 15799 12454 9115 13373 9842.3 14012 12048 24050 13316 24627 16025 12800 8948.5 1 1 1 1 1 1 1 1 1 1 1544 1077 1362 1436 1707 1707 1866 GAILSEEELAAMSPTAAAVAK 21 Phospho (STY) _GAILSEEELAAMS(ph)PTAAAVAK_ GAILSEEELAAMS(1)PTAAAVAK GAILS(-119.46)EEELAAMS(50.81)PT(-50.81)AAAVAK 0 0 1 0 P12270 P12270 P12270 TPR Nucleoprotein TPR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 857.12158203125 3 704.009439 2109.00649 34278.5740931897 2.0804 0.0014646 217010 152.78 217010 152.78 857.118946458263 92.723 0.54782 92.723 92.424 92.972 0 56 18 4 0.986646624916969 0.00349087724912908 0.0338754552792919 3.3131E-23 1 21564 260.56 237.46 3 26687000 7064.9 9243.6 7091.3 9198.2 4905.8 6663.8 5900.5 8052.9 9547.3 16185 6685.3 8731.9 7114.1 9406.4 5124.9 6840.5 6058.3 8511.5 9265.6 15427 1 1 1 1 1 1 1 1 1 1 1545 370 1363 1437 1708 1708 603 GAKEEHGGLIRSPR 14 Phospho (STY) _GAKEEHGGLIRS(ph)PR_ GAKEEHGGLIRS(1)PR GAKEEHGGLIRS(144.72)PR 0 0 1 2 P26368 P26368 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 512.283020019531 4 397.450427 1585.7726 43507.8410467344 0.49444 0.00019651 288290 114.58 288290 114.58 512.032130947044 33.998 1.8342 33.998 33.526 35.36 0 225 62 6 0.996896080526481 0.017777215860847 0.19349712112133 7.4551E-07 1 7563 144.72 120.87 1 326990000 39397 40440 38873 42273 36988 38547 44031 39274 44933 10022 37278 38212 39163 43233 37747 38832 44506 39668 44297 10346 1 1 1 1 1 1 1 1 1 1 1546 480 1364 1438 1709 1709 795 GALQNIIPASTGAAK 15 Phospho (STY) _GALQNIIPAS(ph)TGAAK_ GALQNIIPAS(0.76)T(0.24)GAAK GALQNIIPAS(5.01)T(-5.01)GAAK 0 0 1 0 P04406 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.03466796875 3 497.923746 1490.74941 38897.7813721808 2.1344 0.0010628 306820 152.77 306820 152.78 650.69772249344 79.159 0.92511 79.159 78.521 79.446 1.4211E-14 65 31 3 0.790665044679334 0.0013856916203072 0.0355227239256889 0.038711 1 18583 47.726 31.836 2 12926000 4924.8 5662.1 5315.4 5733.6 6890.6 6285.3 6613.5 6422.4 6699.8 6272.9 4661.5 5349.2 5348.6 5891.6 6895.7 6289 6747.6 6625.8 6607 6055.3 1 1 1 1 1 1 1 1 1 1 1547 293 1365 1439 1710 1710 484 GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER 36 Oxidation (M),Phospho (STY) _GAMPPAPVPAGTPAPPGPATM(ox)MPDGTLGLT(ph)PPTTER_ GAMPPAPVPAGTPAPPGPATM(0.675)M(0.325)PDGTLGLTPPTTER GAMPPAPVPAGTPAPPGPAT(0.001)MMPDGT(0.004)LGLT(0.879)PPT(0.052)T(0.065)ER GAM(-78.02)PPAPVPAGTPAPPGPATM(2.95)M(-2.95)PDGTLGLTPPTTER GAMPPAPVPAGT(-52.49)PAPPGPAT(-32.92)MMPDGT(-24.34)LGLT(10.65)PPT(-11.68)T(-10.65)ER 0 1 1 0 Q15233 Q15233 Q15233 NONO Non-POU domain-containing octamer-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 945.2158203125 4 887.67223 3546.65981 32455.7898340619 1.6358 0.0014521 64541 57.291 64543 57.293 945.465782791934 88.802 1.0369 88.802 88.196 89.233 0 115 35 5 0.931747588912861 0.00262792350195657 0.028526428066377 2.6549E-05 1 20719 103.99 87.538 18 9844600 2523.1 3150.6 2263.2 3282 3261.3 2229.2 2355.7 3353 3556.1 18346 2386.5 2977 2304.3 3345 3239 2330 2474.3 3872.5 3457.9 17353 1 1 1 1 1 1 1 1 1 1 1548 1065 1366 1440 1711 1711 138 4568 GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER 36 Phospho (STY) _GAMPPAPVPAGTPAPPGPATMMPDGTLGLT(ph)PPTTER_ GAMPPAPVPAGTPAPPGPAT(0.001)MMPDGT(0.022)LGLT(0.811)PPT(0.073)T(0.093)ER GAMPPAPVPAGT(-46.35)PAPPGPAT(-28.11)MMPDGT(-15.72)LGLT(9.39)PPT(-10.48)T(-9.39)ER 0 0 1 0 Q15233 Q15233 Q15233 NONO Non-POU domain-containing octamer-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.218139648438 4 883.673501 3530.6649 32196.2836458665 1.6692 0.0014751 64833 57.291 64835 57.293 941.465746451682 97.209 1.325 97.209 96.638 97.963 1.4211E-14 196 45 6 0.789678194696743 0.0044778912561855 0.0496288092710519 0.00080956 1 22559 98.944 88.428 6 18841000 2020.6 1720.7 2122.4 1808.2 2330.7 2093.6 2172.7 2713.4 1769.2 25655 1912.4 1626 2133.6 1855.8 2350.3 2141.9 2208.1 3470.7 1762.8 24220 1 1 1 1 1 1 1 1 1 1 1549 1065 1366 1441 1712 1712 4568 GANDFMCDEMER 12 Unmodified _GANDFMCDEMER_ 0 0 0 0 P17987 P17987 P17987 TCP1 T-complex protein 1 subunit alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.356079101563 2 737.773419 1473.53228 34329.4339853398 1.3109 0.00096717 155310 114.58 155310 114.58 852.354883498139 61.629 0.44217 61.629 61.391 61.833 0 42 14 4 0.991915122442974 0.000695853413654801 0.0169747085559215 2.2232E-15 1 14477 219.92 182.57 1 18029000 20924 22035 21936 20370 15023 21410 17043 20426 23104 25185 19804 20806 21950 21034 15688 21449 17417 21286 22540 24188 1 1 1 1 1 1 1 1 1 1 1550 424 1367 1442 1713 1713 GAPANVSSSDLTGR 14 Phospho (STY) _GAPANVS(ph)SSDLTGR_ GAPANVS(0.675)S(0.24)S(0.085)DLTGR GAPANVS(4.49)S(-4.49)S(-8.98)DLT(-58.41)GR 0 0 1 0 P49674 P49674 P49674 CSNK1E Casein kinase I isoform epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 820.89892578125 2 706.314295 1410.61404 35770.640619845 1.3899 0.00098171 162220 114.58 162230 114.58 820.896119766296 47.622 0.37761 47.622 47.456 47.833 0 28 12 3 0.961364900791555 0.000590250452849529 0.0152063203004751 2.1883E-10 1 11046 189.47 168.32 4 18037000 17459 15244 16311 14445 16066 16973 14092 16310 16205 7003.2 16516 14396 16483 14921 16292 16905 14497 16596 15900 6971.8 1 1 1 1 1 1 1 1 1 1 1551 645 1368 1443 1714 1714 1065 GAPSSPATGVLPSPQGK 17 Phospho (STY) _GAPSS(ph)PATGVLPSPQGK_ GAPS(0.102)S(0.898)PATGVLPSPQGK GAPS(-9.46)S(9.46)PAT(-60.46)GVLPS(-156.35)PQGK 0 0 1 0 Q5SRE5 Q5SRE5 Q5SRE5 NUP188 Nucleoporin NUP188 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.040893554688 3 544.26606 1629.77635 37359.4546973936 1.4802 0.00080564 280700 152.78 280700 152.78 697.376052854773 62.289 1.0396 62.289 61.863 62.902 0 109 35 4 0.912568369635091 0.00552911900365683 0.13346155545801 2.816E-11 2 14599 204.71 183.75 4 57913000 30935 42605 36315 39183 29146 33120 27866 35734 48319 14429 29293 40228 36168 40343 30002 33528 28987 36177 46809 14414 2 2 2 2 2 2 2 2 2 2 1552 1178 1369 1444 1715;1716 1716 2040;2041 GAPVNISSSDLTGR 14 Phospho (STY) _GAPVNISS(ph)SDLTGR_ GAPVNIS(0.414)S(0.521)S(0.064)DLTGR GAPVNIS(-0.99)S(0.99)S(-9.08)DLT(-31.76)GR 0 0 1 0 P48730 P48730 P48730 CSNK1D Casein kinase I isoform delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 841.919921875 2 727.33777 1452.66099 33473.6287033206 1.6624 0.0012091 157530 114.58 157540 114.58 841.918914188425 64.715 0.81103 64.715 64.271 65.082 0 61 27 3 0.714269418243518 0.00102901358945521 0.0303708256592466 0.00028605 1 15182 104.66 82.617 4 17587000 15755 14742 17269 17428 14029 15430 14128 16414 17176 19242 14914 13942 17262 17698 14432 15604 14460 17006 16818 18499 1 1 1 1 1 1 1 1 1 1 1553 629 1370 1445 1717 1717 1040 GAQASSGSPALPR 13 Phospho (STY) _GAQASSGS(ph)PALPR_ GAQASS(0.004)GS(0.995)PALPR GAQAS(-33.53)S(-23.84)GS(23.84)PALPR 0 0 1 0 P42684 P42684 P42684 ABL2 Abelson tyrosine-protein kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.377990722656 2 639.795541 1277.57653 36124.1631192475 1.9628 0.0012558 179090 114.58 179090 114.58 754.37705060846 38.792 0.49844 38.792 38.553 39.052 -7.1054E-15 42 16 3 0.991689215764429 0.00151371431323877 0.0642666112290407 1.7039E-10 1 8818 187.04 151.69 3 19887000 11381 16173 10722 18051 15146 9191.1 13945 14169 17121 4310.4 10767 15289 10886 18278 15095 9678.7 14340 14150 16759 4386.6 1 1 1 1 1 1 1 1 1 1 1554 590 1371 1446 1718 1718 958 GASPLGPGSAAGSGAAASGGLGLGLGGR 28 Phospho (STY) _GAS(ph)PLGPGSAAGSGAAASGGLGLGLGGR_ GAS(1)PLGPGSAAGSGAAASGGLGLGLGGR GAS(65.83)PLGPGS(-65.83)AAGS(-123.81)GAAAS(-174.37)GGLGLGLGGR 0 0 1 0 Q6P1R3 Q6P1R3 Q6P1R3 MSANTD2 Myb/SANT-like DNA-binding domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.765380859375 3 768.376172 2302.10669 34886.9750707827 1.7625 0.0013542 99417 76.389 99418 76.391 845.099703663997 79.046 0.38836 79.046 78.805 79.193 0 21 12 2 0.865338050739339 0.000956941239840897 0.0183687454794902 7.5656E-12 1 18516 190.82 167.02 4 23681000 7276.3 5744.2 7332.1 6309.7 7185.9 7834.9 4957.8 6143.5 5679.2 14508 6885.5 5429.6 7373.9 6468.6 7270.1 7791.3 5173.4 6665 5573.1 13803 1 1 1 1 1 1 1 1 1 1 1555 1256 1372 1447 1719 1719 2228 GASPNVSNVK 10 Phospho (STY) _GAS(ph)PNVSNVK_ GAS(0.988)PNVS(0.012)NVK GAS(19.25)PNVS(-19.25)NVK 0 0 1 0 P16157 P16157 P16157 ANK1 Ankyrin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.906982421875 2 526.742246 1051.46994 36959.923227252 2.3691 0.0012479 435060 229.16 435060 229.17 755.90558221177 44.973 0.351 44.973 44.829 45.18 0 21 11 2 0.703705059622417 0.0012276820680822 0.0321297202437266 0.011842 1 10350 78.985 46.38 2 12662000 11052 36779 11207 32782 21817 9929.2 22038 24379 37340 9614.9 10458 34721 11406 33536 21531 11172 22841 24184 36194 9617.8 1 1 1 1 1 1 1 1 1 1 1556 404 1373 1448 1720 1720 645 GASQAGMTGYGMPR 14 Phospho (STY) _GAS(ph)QAGMTGYGMPR_ GAS(0.696)QAGMT(0.297)GY(0.007)GMPR GAS(3.71)QAGMT(-3.71)GY(-20.11)GMPR 0 0 1 0 P37802;Q9UI15 P37802 P37802 TAGLN2;TAGLN3 Transgelin-2;Transgelin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.377990722656 2 732.293994 1462.57343 34756.9643640482 1.6606 0.0012161 156470 114.58 156470 114.58 847.375642303729 56.908 0.46686 56.908 56.634 57.101 0 45 15 4 0.884175491952809 0.00117204549319914 0.0142262842365719 0.0096089 1 13297 85.734 66.659 3 21130000 17314 15248 20071 14309 24948 21041 27940 23852 16673 24445 16394 14399 20117 14857 25061 20871 27988 24553 16929 23570 1 1 1 1 1 1 1 1 1 1 1557 559 1374 1449 1721 1721 904 GATKESSEKDR 11 Phospho (STY) _GAT(ph)KESSEKDR_ GAT(0.584)KES(0.382)S(0.034)EKDR GAT(1.84)KES(-1.84)S(-12.33)EKDR 0 0 1 2 Q15287 Q15287 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 494.517211914063 4 322.64487 1286.55037 44867.8216782673 0.37236 0.00012014 532700 171.87 532700 171.87 494.516868053224 26.675 0.34191 26.675 26.514 26.856 0 30 11 4 0.88094377650289 0.00237970672149325 0.0121224769358383 0.042382 1 5956 48.14 19.843 3 24593000 13401 9389.5 13469 8742.2 12277 13794 12372 12808 8902.8 2502.8 12681 8866.2 13544 9096.9 12527 13593 12494 12961 8931.6 2653.1 1 1 1 1 1 1 1 1 1 1 1558 1067 1375 1450 1722 1722 4570 GAVAEDGDELRTEPEAK 17 Unmodified _GAVAEDGDELRTEPEAK_ 0 0 0 1 P27695 P27695 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.396423339844 3 596.286639 1785.83809 37019.3968691475 1.425 0.00084968 256210 152.78 256210 152.78 749.061738535423 47.679 0.49702 47.679 47.511 48.008 0 39 16 4 0.901828272499429 0.00210205530359865 0.0333630051665032 1.2266E-07 1 11076 171.72 123.16 1 18284000 25575 15208 24839 15721 17787 26374 19730 21225 15789 8920.3 24198 14370 24971 16281 18491 25912 19882 21758 15746 8890.7 1 1 1 1 1 1 1 1 1 1 1559 487 1376 1451 1723 1723 GAWGNNMNSGLNKSPPLGGAQTISK 25 Oxidation (M),Phospho (STY) _GAWGNNM(ox)NSGLNKS(ph)PPLGGAQTISK_ GAWGNNM(1)NSGLNKSPPLGGAQTISK GAWGNNMNSGLNKS(1)PPLGGAQTISK GAWGNNM(270.28)NSGLNKSPPLGGAQTISK GAWGNNMNS(-77.05)GLNKS(77.05)PPLGGAQT(-155.65)IS(-175.52)K 0 1 1 1 Q01543 Q01543 Q01543 FLI1 Friend leukemia integration 1 transcription factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.681030273438 4 649.555989 2594.19485 35036.3376549703 2.2436 0.0014573 264600 171.87 264600 171.87 821.678716147602 70.827 0.46635 70.827 70.507 70.974 0 61 15 5 0.967303637757561 0.00265571308332592 0.0332714252793928 1.3255E-24 1 16608 270.28 246.19 4 19436000 9229.4 4235.4 10428 4151.3 18749 9669.4 22766 12027 4191.6 12831 8737.9 4000.6 10541 4356.2 18574 9499.6 22473 12360 4923.7 12360 1 1 1 1 1 1 1 1 1 1 1560 839 1377 1452 1724 1724 115 1355 GAWGNNMNSGLNKSPPLGGAQTISK 25 Phospho (STY) _GAWGNNMNSGLNKS(ph)PPLGGAQTISK_ GAWGNNMNSGLNKS(1)PPLGGAQTISK GAWGNNMNS(-54.81)GLNKS(54.81)PPLGGAQT(-98.79)IS(-106.72)K 0 0 1 1 Q01543 Q01543 Q01543 FLI1 Friend leukemia integration 1 transcription factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 817.932189941406 4 645.55726 2578.19994 35046.314344418 1.7749 0.0011458 266240 171.87 266240 171.87 817.679154808827 76.019 0.67467 76.019 75.657 76.332 0 85 22 5 0.836543257103494 0.00259943171318407 0.0246417770378832 6.3596E-12 1 17809 187.32 165.71 4 30615000 10580 4260 12032 3420.2 23982 10324 25529 14664 3721.1 14939 10017 4019.4 12181 3674 23632 10123 25315 14991 4596.6 14407 1 1 1 1 1 1 1 1 1 1 1561 839 1377 1453 1725 1725 1355 GAWGNNMNSGLNKSPPLGGAQTISK 25 Phospho (STY) _GAWGNNMNSGLNKS(ph)PPLGGAQTISK_ GAWGNNMNS(0.002)GLNKS(0.998)PPLGGAQTISK GAWGNNMNS(-28.01)GLNKS(28.01)PPLGGAQT(-69.03)IS(-83.98)K 0 0 1 1 Q01543 Q01543 Q01543 FLI1 Friend leukemia integration 1 transcription factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1090.23461914063 3 860.407255 2578.19994 31257.4324549714 1.4567 0.0012534 266340 229.16 266350 229.17 1089.90700192532 76.02 0.49969 76.02 75.746 76.245 0 49 16 4 0.967120215333132 0.00149827670882314 0.0211585270648466 4.6222E-06 1 17817 136.89 117.35 4 13714000 9397.6 4033.9 7235.8 4257.4 18039 8795.7 19125 11068 4481.5 38006 8884.4 3812 7544.7 4430.6 17670 8713.9 19014 12160 5043 36043 1 1 1 1 1 1 1 1 1 1 1562 839 1377 1453 1726 1726 1355 GCLAGGGSPK 10 Phospho (STY) _GCLAGGGS(ph)PK_ GCLAGGGS(1)PK GCLAGGGS(115.33)PK 0 0 1 0 Q9H257 Q9H257 Q9H257 CARD9 Caspase recruitment domain-containing protein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 481.247772216797 3 328.472054 982.394331 45787.430016621 0.97745 0.00032106 465110 152.78 465110 152.78 481.247363352574 42.639 0.54706 42.639 42.308 42.855 0 49 18 4 0.876835673797079 0.00208106518965252 0.0159276545260394 0.00016923 1 9722 115.33 80.572 1 13899000 11332 11475 12292 12582 14342 12343 14642 11697 13236 1522.6 10727 10846 12348 12847 14436 12377 14852 11804 13119 1704.4 1 1 1 1 1 1 1 1 1 1 1563 1917 1378 1454 1727 1727 3481 GCSPGESASGGLSK 14 Phospho (STY) _GCS(ph)PGESASGGLSK_ GCS(0.999)PGES(0.001)ASGGLSK GCS(31.16)PGES(-31.16)AS(-50.77)GGLS(-83.77)K 0 0 1 0 Q9H165 Q9H165 Q9H165 BCL11A B-cell lymphoma/leukemia 11A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 611.629028320313 3 458.51828 1372.53301 40635.9449739244 1.8983 0.0008704 333190 152.77 333190 152.78 611.293178094691 44.729 0.49593 44.729 44.48 44.976 7.1054E-15 52 16 4 0.440978672242537 0.000946687237977815 0.00933705215748982 0.0048287 1 10321 88.319 64.714 4 19647000 17648 14600 17640 15109 15251 19925 12814 19078 13735 3900.5 16699 13795 17729 15560 15584 19754 13185 19287 13513 4114.3 1 1 1 1 1 1 1 1 1 1 1564 1910 1379 1455 1728 1728 3467 GCSPPAPAGSPR 12 Phospho (STY) _GCS(ph)PPAPAGSPR_ GCS(1)PPAPAGSPR GCS(38.48)PPAPAGS(-38.48)PR 0 0 1 0 Q9C073 Q9C073 Q9C073 FAM117A Protein FAM117A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.841552734375 2 617.257737 1232.50092 35371.6595777264 1.7289 0.0010672 185630 114.58 185630 114.58 731.838645592951 31.857 0.70583 31.857 31.561 32.267 0 40 23 2 0.84837933591344 0.000915324578408894 0.0633572377405549 0.013838 1 7156 76.563 66.908 2 9089000 8065.6 9863.5 7534.8 9604.1 15602 8670 15888 10953 11019 3288.7 7630.1 9316.2 7716.9 9862 15356 8766.8 16026 10998 11079 3350.2 1 1 1 1 1 1 1 1 1 1 1565 1882 1380 1456 1729 1729 3422 GDAEKPEEELEEDDDEELDETLSER 25 Unmodified _GDAEKPEEELEEDDDEELDETLSER_ 0 0 0 1 Q9NS69 Q9NS69 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1127.85559082031 3 974.410785 2920.21053 29323.1975922633 1.3266 0.0012927 156790 152.78 156790 152.78 1127.52065988033 74.019 0.91563 74.019 73.473 74.388 0 99 31 6 0.995444060425185 0.00826186173996804 0.104097984971254 2.2394E-24 1 17379 272.91 250 1 59005000 22839 21739 22139 21663 28792 23495 28330 25950 24804 28990 21609 20536 22413 22277 28816 23553 28763 26808 24624 27898 1 1 1 1 1 1 1 1 1 1 1566 2024 1381 1457 1730 1730 GDALNLSSPKR 11 Phospho (STY) _GDALNLSS(ph)PKR_ GDALNLS(0.092)S(0.908)PKR GDALNLS(-9.92)S(9.92)PKR 0 0 1 1 A6NJL1;Q9BUG6 A6NJL1 A6NJL1 ZSCAN5B;ZSCAN5A Zinc finger and SCAN domain-containing protein 5B;Zinc finger and SCAN domain-containing protein 5A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 565.978637695313 3 413.202732 1236.58637 41590.8454412062 1.5226 0.00062915 369730 152.78 369740 152.78 566.311248690433 52.29 0.94925 52.29 51.921 52.87 0 64 32 3 0.99137229621582 0.00223298319415921 0.0262451417259992 0.011461 1 12161 70.47 64.172 2 21655000 15738 12639 15696 13209 11475 16720 9967 13185 13305 2464.3 14892 11943 15752 13584 11876 16563 10309 13437 12986 2625.6 1 1 1 1 1 1 1 1 1 1 1567 11 1382 1458 1731 1731 23 GDDDEESDEEAVKK 14 Phospho (STY) _GDDDEES(ph)DEEAVKK_ GDDDEES(1)DEEAVKK GDDDEES(184.32)DEEAVKK 0 0 1 1 O43395 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.371948242188 3 549.208605 1644.60399 35278.9610188803 1.8432 0.0010123 417260 229.16 417260 229.16 778.372156773742 43.617 1.1031 43.617 43.437 44.54 0 84 37 3 0.974547637280019 0.000886369068952793 0.00304373528929452 1.8428E-10 1 10013 184.32 153.21 1 29277000 32288 29295 29680 30053 23340 29861 23306 27057 31602 8236.1 30543 27678 29958 30808 24067 29920 23952 27497 30830 8381.5 1 1 1 1 1 1 1 1 1 1 1568 109 1383 1459 1732 1732 185 GDDEEWNEVLNK 12 Unmodified _GDDEEWNEVLNK_ 0 0 0 0 Q9H0A0 Q9H0A0 Q9H0A0 NAT10 N-acetyltransferase 10 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.992553710938 3 483.216044 1446.6263 NaN NaN NaN NaN NaN NaN NaN NaN 77.361 1 77.361 76.861 77.861 0 NaN NaN NaN 3.8775E-07 1 18142 151.79 120.9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1569 1898 1384 1460 1733 1733 GDDGIFDDNFIEER 14 Unmodified _GDDGIFDDNFIEER_ 0 0 0 0 O60493 O60493 O60493 SNX3 Sorting nexin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 935.937561035156 2 821.354999 1640.69544 32356.7448914407 1.6529 0.0013576 139500 114.58 139500 114.58 935.936603894279 85.128 0.83567 85.128 84.84 85.676 0 80 28 5 0.938689271163942 0.00503862158252889 0.219678838468045 5.6864E-31 1 19857 308.37 266.67 1 56610000 17724 14102 18105 13220 15703 18960 15095 14781 14540 35671 16773 13317 18179 13720 16068 18763 15379 16063 14371 33930 1 1 1 1 1 1 1 1 1 1 1570 146 1385 1461 1734 1734 GDEASEEGQNGSSPK 15 Phospho (STY) _GDEASEEGQNGSS(ph)PK_ GDEASEEGQNGS(0.016)S(0.984)PK GDEAS(-121.66)EEGQNGS(-18.02)S(18.02)PK 0 0 1 0 P35611 P35611 P35611 ADD1 Alpha-adducin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.309814453125 3 524.533423 1570.57844 37764.9993218726 2.0189 0.001059 291260 152.78 291260 152.78 677.308471851906 29.819 0.43791 29.819 29.636 30.074 0 35 14 4 0.985926854092218 0.0017876376693192 0.0264061170377379 1.6725E-07 1 6650 168.29 135.85 3 12307000 10537 9066.3 11065 9462.1 6370.7 10909 6415.7 8217.6 10565 3003.6 9972.5 8566.8 11054 9714.5 6746.7 10842 6642 8437.7 10248 3018.4 1 1 1 1 1 1 1 1 1 1 1571 549 1386 1462 1735 1735 891 GDEELDSLIK 10 Unmodified _GDEELDSLIK_ 0 0 0 0 Q71UI9;P0C0S5 Q71UI9 Q71UI9 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.946533203125 2 559.782418 1117.55028 35716.4111928837 2.5787 0.0014435 409380 229.16 409380 229.16 788.944967791954 79.489 0.53867 79.489 79.222 79.761 0 55 18 4 0.983037768835337 0.00180059529179977 0.115354897162697 3.5038E-09 1 18604 194.67 102.23 1 32331000 22984 27908 25292 25566 27886 23960 34051 29115 27318 12729 21757 26350 25378 26367 28226 24176 34180 29389 27240 12660 1 1 1 1 1 1 1 1 1 1 1572 347 1387 1463 1736 1736 GDFDENLNYPEQK 13 Unmodified _GDFDENLNYPEQK_ 0 0 0 0 Q9UBQ0 Q9UBQ0 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.344360351563 3 523.566965 1567.67907 32921.4621928297 2.0011 0.0010477 291800 152.78 291800 152.78 676.343188353618 64.984 0.45999 64.984 64.622 65.082 0 32 15 4 0.993088186364287 0.000932781213313795 0.00834638682147117 0.00016006 1 15243 107.53 92.142 1 14706000 12654 9599.6 12605 9981.1 12447 13035 11874 13349 8387.7 6602.6 11974 9070.6 12692 10274 12629 12945 12019 13577 8424 6526.1 1 1 1 1 1 1 1 1 1 1 1573 2125 1388 1464 1737 1737 GDGGSTTGLSATPPASLPGSLTNVK 25 Phospho (STY) _GDGGSTTGLSAT(ph)PPASLPGSLTNVK_ GDGGSTTGLS(0.002)AT(0.998)PPASLPGSLTNVK GDGGS(-62.87)T(-58.08)T(-50.82)GLS(-28.09)AT(28.09)PPAS(-52.97)LPGS(-110.78)LT(-121.9)NVK 0 0 1 0 P15056 P15056 P15056 BRAF Serine/threonine-protein kinase B-raf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 942.162475585938 3 789.04761 2364.121 32976.3657756849 2.2285 0.0017584 193620 152.78 193620 152.78 942.157504591087 81.661 0.72383 81.661 81.335 82.059 -1.4211E-14 79 24 4 0.870945883604876 0.00285831780345724 0.0263498248725624 2.1906E-08 1 19093 172.32 150.51 8 21189000 7507.7 13336 7383.4 13923 10290 7337.3 9533.2 10659 14307 35838 7103.8 12602 7475.9 14154 10265 7757.6 9871.1 11643 13915 33993 1 1 1 1 1 1 1 1 1 1 1574 394 1389 1465 1738 1738 4398 GDGVTPPAGTAAPAPPPLSQDVPGR 25 Phospho (STY) _GDGVT(ph)PPAGTAAPAPPPLSQDVPGR_ GDGVT(1)PPAGTAAPAPPPLSQDVPGR GDGVT(34.16)PPAGT(-34.16)AAPAPPPLS(-89.66)QDVPGR 0 0 1 0 Q96KQ7 Q96KQ7 Q96KQ7 EHMT2 Histone-lysine N-methyltransferase EHMT2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.111022949219 3 802.388078 2404.1424 33700.5268185301 1.7625 0.0014142 95201 76.388 95203 76.389 879.110417934304 69.665 0.81503 69.665 69.033 69.848 0 81 27 4 0.975538558184055 0.00200223577958223 0.047432880809944 0.00010893 1 16331 111.31 94.381 3 10097000 4844.5 5234.6 3870.2 5564.8 6462.7 3954.1 5544.9 5077.5 5037.8 20287 4580.5 4946.8 3983.1 5667.7 6391.9 4087.6 5674.4 5660.9 4992.3 19220 1 1 1 1 1 1 1 1 1 1 1575 1709 1390 1466 1739 1739 4730 GDPEWSSETDALVGSRLSHS 20 Phospho (STY) _GDPEWSSETDALVGSRLS(ph)HS_ GDPEWSSETDALVGS(0.192)RLS(0.677)HS(0.13) GDPEWS(-100.65)S(-96.18)ET(-81.17)DALVGS(-5.46)RLS(5.46)HS(-7.16) 0 0 1 1 Q7Z7N9 Q7Z7N9 Q7Z7N9 TMEM179B Transmembrane protein 179B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 813.705200195313 3 737.3181 2208.93247 35454.7640958737 1.8879 0.001392 103600 76.386 103600 76.388 814.039925324529 74.712 0.52152 74.712 74.479 75.001 0 44 17 4 0.586161191634981 0.000964495218984405 0.0254070477420481 1.687E-06 1 17555 137.85 121.88 6 7983300 10183 5185.2 10172 5102.5 6308 10737 5398.1 7742.6 5207.4 14850 9635.8 4897.8 10195 5334.7 6616.5 10501 5533.3 8329.9 5146.3 14162 1 1 1 1 1 1 1 1 1 1 1576 1358 1391 1467 1740 1740 2468 GDPPRLSPDPVAGSAVSQELR 21 Phospho (STY) _GDPPRLS(ph)PDPVAGSAVSQELR_ GDPPRLS(1)PDPVAGSAVSQELR GDPPRLS(80.48)PDPVAGS(-80.48)AVS(-109.16)QELR 0 0 1 1 Q9BUR4 Q9BUR4 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 820.084228515625 3 743.361752 2227.06343 35076.1978556538 1.8165 0.0013503 102760 76.387 102760 76.388 820.083631765501 69.701 1.0125 69.701 69.264 70.276 0 128 34 6 0.944210507792174 0.00683571709629324 0.102101110732085 2.8477E-08 2 16317 167.06 142.76 3 47312000 14289 31597 16858 26983 28658 16012 28261 26761 32614 81472 13530 29822 16971 27810 28384 16827 28906 28882 31995 77335 2 2 2 2 2 2 2 2 2 2 1577 1836 1392 1468 1741;1742 1741 3364 GDQCCYSHSPPTPR 14 Phospho (STY) _GDQCCYSHS(ph)PPTPR_ GDQCCYS(0.003)HS(0.992)PPT(0.005)PR GDQCCY(-73.95)S(-25.21)HS(23.26)PPT(-23.26)PR 0 0 1 0 Q9NXH9 Q9NXH9 Q9NXH9 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.609069824219 3 581.220128 1740.63855 38810.1406069951 1.7545 0.0010198 131430 76.387 131430 76.388 657.941897370651 31.924 1.4114 31.924 30.973 32.384 0 172 47 5 0.983452714428359 0.00264634093726521 0.0141410598383579 8.3796E-07 1 7080 140.63 125.24 4 42037000 11422 13640 11431 15204 16386 11219 15524 15158 14665 4147.3 10809 12894 11569 15451 16323 11481 15820 15177 14507 4256 1 1 1 1 1 1 1 1 1 1 1578 2066 1393 1469 1743 1743 3734 GDRSEDFGVNEDLADSDAR 19 Unmodified _GDRSEDFGVNEDLADSDAR_ 0 0 0 1 P04083 P04083 P04083 ANXA1 Annexin A1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.688171386719 3 689.966516 2066.87772 35199.8515610287 1.8992 0.0013104 110710 76.387 110710 76.388 766.687937759076 53.989 0.64251 53.989 53.744 54.387 0 73 21 5 0.989679999532523 0.00404901522343122 0.0357654765715812 2.2645E-22 1 12570 255.98 231.19 1 49319000 13917 30870 13612 29541 21577 12012 19180 21373 30829 10190 13168 29154 13817 30131 21403 12960 19958 21383 29925 10090 1 1 1 1 1 1 1 1 1 1 1579 290 1394 1470 1744 1744 GDSLKEPTSIAESSR 15 Phospho (STY) _GDS(ph)LKEPTSIAESSR_ GDS(0.998)LKEPT(0.001)S(0.001)IAESSR GDS(28.65)LKEPT(-28.65)S(-32.56)IAES(-38.58)S(-40.86)R 0 0 1 1 Q9C0B5 Q9C0B5 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.031860351563 3 552.92073 1655.74036 37511.0119428955 1.4201 0.00078521 276310 152.78 276310 152.78 705.696366554772 53.312 0.82682 53.312 53.118 53.945 -7.1054E-15 64 27 4 0.991044906810611 0.00250590989287754 0.0122028835303061 0.025122 1 12405 56.38 36.542 5 49488000 51369 29060 57908 26981 29649 58361 29907 40267 29248 7064.9 48632 27440 57589 28334 31760 56884 30412 41305 28887 7584.3 1 1 1 1 1 1 1 1 1 1 1580 1884 1395 1471 1745 1745 3427 GDVEEDETIPDSEQDIRPR 19 Unmodified _GDVEEDETIPDSEQDIRPR_ 0 0 0 1 Q92973 Q92973 Q92973 TNPO1 Transportin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 810.392700195313 3 734.004859 2198.99275 34550.6100604854 1.4797 0.0010861 104070 76.389 104070 76.39 810.728285941633 52.253 0.36246 52.253 52.101 52.463 0 40 12 4 0.86378643153274 0.00154255025287035 0.0312452741939547 1.0003E-15 1 12185 226.23 198.53 1 17712000 11401 12726 11830 12699 11842 11302 11719 12234 12840 9141.2 10790 12022 11887 13018 12015 11420 11966 12511 12622 8890.6 1 1 1 1 1 1 1 1 1 1 1581 1635 1396 1472 1746 1746 GDVTAEEAAGASPAK 15 Phospho (STY) _GDVTAEEAAGAS(ph)PAK_ GDVTAEEAAGAS(1)PAK GDVT(-102.54)AEEAAGAS(102.54)PAK 0 0 1 0 P49006 P49006 P49006 MARCKSL1 MARCKS-related protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.322326660156 3 485.211733 1452.61337 39273.6009293317 1.8952 0.00091959 314860 152.78 314870 152.78 637.987106156761 45.176 0.6069 45.176 44.859 45.466 -7.1054E-15 81 20 6 0.970561665736116 0.0229175514944655 0.322221264152076 2.1966E-05 1 10367 133.93 115.1 2 215920000 24426 67405 35626 64375 25195 35553 18169 45651 74780 28897 23155 63658 35088 65820 26138 37104 20382 46271 71385 28267 1 1 1 1 1 1 1 1 1 1 1582 631 1397 1473 1747 1747 1043 GDYDAFFEAR 10 Unmodified _GDYDAFFEAR_ 0 0 0 0 O75368 O75368 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.343505859375 2 595.759278 1189.504 37106.3219287783 1.8331 0.0010921 192330 114.58 192330 114.58 710.342229062017 76.739 0.58367 76.739 76.444 77.028 0 46 19 3 0.893454167093991 0.00144468300522246 0.0461707845723215 0.00026851 2 18006 132.01 88.202 1 10100000 18459 15522 16805 15463 44503 19625 45498 26865 14943 17324 17461 14662 17358 15947 43512 19608 45428 27189 16040 16935 2 2 2 2 2 2 2 2 2 2 1583 179 1398 1474 1748;1749 1749 GDYERLDAIR 10 Unmodified _GDYERLDAIR_ 0 0 0 1 O75339 O75339 O75339 CILP Cartilage intermediate layer protein 1;Cartilage intermediate layer protein 1 C1;Cartilage intermediate layer protein 1 C2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.889831542969 2 604.306926 1206.5993 36745.1361346852 1.7479 0.0010563 189610 114.58 189610 114.58 718.889137930602 59.954 0.69283 59.954 59.621 60.314 0 53 23 4 0.818194126969231 0.00162057833471043 0.026552661559292 0.044362 1 14029 37.549 15.699 1 26325000 25284 17586 25190 18598 20347 25733 20581 21936 18186 15234 23925 16619 25311 19149 20935 25456 20873 22610 18046 14852 1 1 1 1 1 1 1 1 1 1 1584 176 1399 1475 1750 1750 GEAAAERPGEAAVASSPSK 19 Phospho (STY) _GEAAAERPGEAAVASS(ph)PSK_ GEAAAERPGEAAVAS(0.019)S(0.701)PS(0.28)K GEAAAERPGEAAVAS(-15.64)S(3.99)PS(-3.99)K 0 0 1 1 P29966 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.396606445313 3 622.286072 1863.83639 35607.1606082593 2.1594 0.0013438 245510 152.77 245510 152.78 775.059831827307 38.768 0.35197 38.768 38.61 38.962 -7.1054E-15 26 11 3 0.651413194123962 0.00185488505747467 0.0230800173077406 0.0053584 1 8800 86.909 60.992 3 12628000 11864 13643 14114 11930 31250 14710 31946 19573 13974 14052 11235 12878 14294 12398 30694 14708 31993 19868 14550 13685 1 1 1 1 1 1 1 1 1 1 1585 504 1400 1476 1751 1751 833 GEAETRVAVK 10 Phospho (STY) _GEAET(ph)RVAVK_ GEAET(1)RVAVK GEAET(41.19)RVAVK 0 0 1 1 P06213 P06213 P06213 INSR Insulin receptor;Insulin receptor subunit alpha;Insulin receptor subunit beta MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.441223144531 2 570.276453 1138.53835 NaN NaN NaN NaN NaN NaN NaN NaN 94.047 1 94.047 93.547 94.547 0 NaN NaN NaN 0.050719 1 21895 41.189 10.531 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1586 309 1401 1477 1752 1752 4367 GEDEEENNLEVR 12 Unmodified _GEDEEENNLEVR_ 0 0 0 0 P04843 P04843 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 831.396667480469 2 716.812967 1431.61138 34315.1950346958 1.6024 0.0011487 159850 114.58 159850 114.58 831.395413264657 39.981 0.81518 39.981 39.569 40.384 0 49 27 3 0.810322776582228 0.00112834059398236 0.0110712850418915 4.1429E-22 1 9094 258.72 217.29 1 32426000 48402 37724 46631 38467 49168 49272 50466 46652 39879 9679.5 45794 35641 47090 39625 49754 48891 51017 47188 39798 10194 1 1 1 1 1 1 1 1 1 1 1587 295 1402 1478 1753 1753 GEEEPLVASEDGAVDAPAPDEPEGGDGAAP 30 Unmodified _GEEEPLVASEDGAVDAPAPDEPEGGDGAAP_ 0 0 0 0 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1026.80249023438 3 950.080822 2847.22064 31175.2150336184 1.6714 0.001588 80401 76.387 80402 76.389 1026.80144135347 70.917 0.49086 70.917 70.655 71.146 1.4211E-14 44 16 4 0.953152318930944 0.0024882633867652 0.00973033796574083 1.4218E-07 2 16644 149.18 141.08 1 22175000 5009.6 6734 5280.5 7489 7831.6 6161 6604 7136.9 7446.4 31489 4741.4 6365.7 5330.5 7622.1 7780.4 6306.3 6804.3 8069.8 7311.6 29816 2 2 2 2 2 2 2 2 2 2 1588 403 1403 1479 1754;1755 1755 GEEGSDDDETENGPKPK 17 Phospho (STY) _GEEGS(ph)DDDETENGPKPK_ GEEGS(0.999)DDDET(0.001)ENGPKPK GEEGS(28.55)DDDET(-28.55)ENGPKPK 0 0 1 1 Q6PD62 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 858.077026367188 3 628.577468 1882.71058 33283.3140125994 2.2662 0.0014245 364570 229.16 364580 229.16 858.075180409622 38.373 2.2272 38.373 37.922 40.149 0 195 76 4 0.355101491221483 0.000810597109403863 0.0168367957917715 0.0081699 2 8995 78.975 62.669 2 17623000 22844 25311 24330 26272 39409 25487 39972 33828 29149 20260 21622 23916 24599 26904 39099 25724 40365 34220 29221 19860 2 2 2 2 2 2 2 2 2 2 1589 1265 1404 1480 1756;1757 1757 2242 GEEKSPK 7 Phospho (STY) _GEEKS(ph)PK_ GEEKS(1)PK GEEKS(71.22)PK 0 0 1 1 Q96T23 Q96T23 Q96T23 RSF1 Remodeling and spacing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 514.62353515625 3 285.460031 853.358263 43970.789292 1.7793 0.00050793 802780 229.16 802790 229.16 514.622942361647 30.856 0.54012 30.856 30.641 31.181 -3.5527E-15 45 17 4 0.938161178304752 0.00327610494154183 0.135316258676635 0.011796 1 6899 71.221 16.682 1 14816000 14106 18545 14471 19788 14485 14518 14559 16042 19463 2600.2 13350 17526 14551 20157 14705 14812 14950 16111 18996 2819.7 1 1 1 1 1 1 1 1 1 1 1590 1754 1405 1481 1758 1758 3217 GEFSASPMLK 10 Oxidation (M),Phospho (STY) _GEFSAS(ph)PM(ox)LK_ GEFSASPM(1)LK GEFS(0.012)AS(0.988)PMLK GEFSASPM(92.19)LK GEFS(-19.23)AS(19.23)PMLK 0 1 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.942504882813 3 388.166519 1161.47773 42272.9651320474 1.5989 0.00062062 393580 152.78 393580 152.78 540.941819894104 64.013 0.80768 64.013 63.578 64.385 0 90 27 5 0.826478411097178 0.00519882969524449 0.07050459507651 0.0031972 1 14996 92.19 57.811 2 90374000 33902 12110 29015 15829 8052 36179 11700 22245 12289 3188.1 32062 11461 29247 16352 9461 35187 11750 22950 12101 3516.8 1 1 1 1 1 1 1 1 1 1 1591 2226 1406 1482 1759 1759 238 4047 GEFSASPMLK 10 Phospho (STY) _GEFSAS(ph)PMLK_ GEFS(0.001)AS(0.999)PMLK GEFS(-31.04)AS(31.04)PMLK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 803.413024902344 2 573.748682 1145.48281 34742.9041197266 1.9024 0.0010915 399410 229.16 399420 229.16 802.911949889886 76.11 0.73153 76.11 75.685 76.417 0 117 24 6 0.987931274828026 0.00229116273032138 0.0473969849977437 0.00078805 1 17804 100.69 62.394 2 226560000 22877 23492 23780 25267 16829 21800 16865 24163 27046 18142 21650 22202 23808 25779 17499 22070 17444 24692 26254 17642 1 1 1 1 1 1 1 1 1 1 1592 2226 1406 1483 1760 1760 4047 GEGDAPFSEPGTTSTQRPSSPETATK 26 Phospho (STY) _GEGDAPFSEPGTTSTQRPSS(ph)PETATK_ GEGDAPFSEPGTTSTQRPS(0.094)S(0.898)PET(0.008)ATK GEGDAPFS(-129.57)EPGT(-93.53)T(-79.67)S(-63.44)T(-56.58)QRPS(-9.8)S(9.8)PET(-20.44)AT(-41.01)K 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1058.84057617188 3 905.730897 2714.17086 30541.4889607674 1.2943 0.0011723 168680 152.78 168680 152.78 1058.84045246922 53.271 0.68715 53.271 53.027 53.714 -7.1054E-15 103 23 7 0.985276530411358 0.00320809982113034 0.0169355677911809 9.7636E-34 2 12391 320.68 298.73 9 173420000 71721 75943 75674 78084 42242 75452 37393 69484 84955 11040 67882 71752 75554 80001 44817 75693 39598 70262 81808 12003 2 2 2 2 2 2 2 2 2 2 1593 2226 1407 1484 1761;1762 1762 4048 GEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAK 34 Unmodified _GEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAK_ 0 0 0 0 P49006 P49006 P49006 MARCKSL1 MARCKS-related protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 909.951843261719 4 795.11682 3176.43817 33671.5729256638 1.5962 0.0012692 144110 114.58 144110 114.58 910.199795389678 57.061 0.32035 57.061 56.928 57.249 0 35 10 5 0.893806469398352 0.0020862884729378 0.0193519719216888 1.6136E-08 1 13356 165 147.64 1 16857000 7334 10539 5926.4 8797.1 6242.7 5151.6 6600 7636.8 10965 10219 6934.6 9945.9 6053 9080.3 6325.6 5376.9 6820.6 7871.9 10634 9799.3 1 1 1 1 1 1 1 1 1 1 1594 631 1408 1485 1763 1763 GEPNVSYICSR 11 Phospho (STY) _GEPNVSY(ph)ICSR_ GEPNVS(0.067)Y(0.933)ICSR GEPNVS(-11.47)Y(11.47)ICS(-84.21)R 0 0 1 0 P49840;P49841 P49840 P49840 GSK3A;GSK3B Glycogen synthase kinase-3 alpha;Glycogen synthase kinase-3 beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.864318847656 2 681.281409 1360.54827 34331.6455270093 1.7534 0.0011946 168180 114.58 168190 114.58 795.862919597967 51.004 1.7403 51.004 50.242 51.983 0 265 59 6 0.997892047911533 0.0215026098079011 0.299444370783539 2.492E-15 2 11919 238.9 193.82 3 373060000 188140 247540 185900 244280 162560 182290 171040 192080 275240 29582 178020 233820 187050 250020 166560 185670 176550 193180 267160 32301 2 2 2 2 2 2 2 2 2 2 1595 658 1409 1486 1764;1765 1765 4877 GESAPTLSTSPSPSSPSPTSPSPTLGR 27 Phospho (STY) _GESAPTLSTSPSPSSPSPTSPS(ph)PTLGR_ GESAPTLSTSPSPSSPSPT(0.003)S(0.058)PS(0.829)PT(0.111)LGR GES(-151.49)APT(-134.59)LS(-121.65)T(-109.54)S(-98.63)PS(-76.26)PS(-51.42)S(-53.82)PS(-36.43)PT(-25)S(-11.56)PS(8.74)PT(-8.74)LGR 0 0 1 0 Q9H330 Q9H330 Q9H330 TMEM245 Transmembrane protein 245 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 964.802917480469 3 888.079638 2661.21708 31572.6532820693 1.5342 0.0013625 86014 76.387 86015 76.388 964.800886416443 59.572 0.4574 59.572 59.365 59.822 7.1054E-15 51 15 4 0.98260178865274 0.00329249954758991 0.0758577695212408 1.3019E-17 1 13954 215.15 181.86 13 28160000 3544.7 4971.4 3488.1 4707.7 6209.9 3860.7 8017.9 6366.3 4665.9 11876 3354 4694.8 3552.3 4836.2 6163.6 3961.4 7982.9 6646.6 4746 11330 1 1 1 1 1 1 1 1 1 1 1596 1928 1410 1487 1766 1766 3500 GESPPTPPGQPPISPK 16 Phospho (STY) _GESPPTPPGQPPIS(ph)PK_ GESPPTPPGQPPIS(1)PK GES(-122.17)PPT(-110.09)PPGQPPIS(110.09)PK 0 0 1 0 Q92835 Q92835 Q92835 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.045715332031 3 555.934311 1664.7811 37073.6015766796 1.9843 0.0011031 274810 152.78 274810 152.78 708.709848516287 57.392 0.86418 57.392 56.868 57.732 0 76 22 4 0.960675862715779 0.0085112012253501 0.31810729650121 2.6099E-07 1 13465 160.02 146.11 3 68051000 19455 13686 21438 11381 35632 21664 31594 24211 12686 15956 18417 12915 21639 11992 35246 21318 31836 24668 13319 15585 1 1 1 1 1 1 1 1 1 1 1597 1625 1411 1488 1767 1767 3003 GESPVDYDGGR 11 Unmodified _GESPVDYDGGR_ 0 0 0 0 Q15084 Q15084 Q15084 PDIA6 Protein disulfide-isomerase A6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.835998535156 2 576.251817 1150.48908 37302.5208304695 1.9571 0.0011278 198840 114.58 198840 114.58 690.834174617622 39.006 0.6395 39.006 38.754 39.393 0 49 21 3 0.909290366137091 0.00313545786318549 0.0593400140018601 3.4888E-14 1 8861 217.12 129.87 1 30324000 35298 33532 36541 32537 53152 41152 55427 46188 32976 5141.8 33406 31671 36930 33608 52969 40937 55696 46290 33490 5910.5 1 1 1 1 1 1 1 1 1 1 1598 1059 1412 1489 1768 1768 GESRPETPKQK 11 Phospho (STY) _GESRPET(ph)PKQK_ GES(0.094)RPET(0.906)PKQK GES(-9.82)RPET(9.82)PKQK 0 0 1 2 Q6KC79 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 507.036041259766 4 334.911875 1335.61839 43559.9667260112 1.2935 0.00043322 513190 171.87 513190 171.87 506.783886508082 28.86 0.43921 28.86 28.637 29.076 0 36 14 3 0.940430281113351 0.00170972230322722 0.0196769372930738 0.008455 1 6441 80.706 61.877 2 11140000 9772.1 9960.8 10095 9300.3 10212 11033 10487 10129 9986.3 3748.9 9248.1 9405.8 10149 9617.4 10360 10978 10648 10308 9874.7 3764.5 1 1 1 1 1 1 1 1 1 1 1599 1244 1413 1490 1769 1769 4618 GEWFLLGSPGS 11 Phospho (STY) _GEWFLLGSPGS(ph)_ GEWFLLGS(0.356)PGS(0.644) GEWFLLGS(-2.57)PGS(2.57) 0 0 1 0 Q96T76 Q96T76 Q96T76 MMS19 MMS19 nucleotide excision repair protein homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.848083496094 2 615.265554 1228.51655 41306.7945748495 1.6336 0.0010051 186230 114.58 186230 114.58 729.847602877786 103.06 0.20716 103.06 102.97 103.18 0 10 6 2 0.955244101837208 0.000477717720599966 0.0103076521562293 0.000246 1 24297 107.51 99.36 2 3824000 4480.5 3801.8 4742 3825.4 3729.8 4215.1 3199.8 5278.2 4324.3 14341 4240.6 3591.6 4746.5 3932.7 3838.4 4247.9 3313.4 5685.4 4219.1 13626 1 1 1 1 1 1 1 1 1 1 1600 1757 1414 1491 1770 1770 3241 GFAFVTFDDHDTVDK 15 Unmodified _GFAFVTFDDHDTVDK_ 0 0 0 0 P51991 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.040222167969 3 571.930015 1712.76822 37312.7422773777 1.6784 0.00095994 267120 152.77 267120 152.78 725.038756613054 87.584 0.64529 87.584 87.322 87.967 0 49 21 4 0.956886581753719 0.00357947777870174 0.0482725212253721 1.0333E-15 1 20433 218.16 185.66 1 11468000 6620 8578.8 6784.1 7366.8 6787.7 9318.2 11394 12570 8336.4 9681.8 6264.8 8097.2 6830.5 7669.3 6950.2 9312 11293 12775 8355.3 9407.5 1 1 1 1 1 1 1 1 1 1 1601 686 1415 1492 1771 1771 GFGDGYNGYGGGPGGGNFGGSPGYGGGR 28 Phospho (STY) _GFGDGYNGYGGGPGGGNFGGS(ph)PGYGGGR_ GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR GFGDGY(-155.11)NGY(-131.94)GGGPGGGNFGGS(76.88)PGY(-76.88)GGGR 0 0 1 0 P22626 P22626 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 935.729553222656 3 859.006808 2573.99859 31860.0496639335 1.7668 0.0015177 88926 76.388 88927 76.389 935.728871443357 70.038 0.69519 70.038 69.638 70.333 0 74 23 4 0.992530024350307 0.00633315604507221 0.0380762267446145 2.5979E-12 1 16393 205.62 188.4 4 131620000 7990.9 14144 7523.2 12317 6511.7 9490.1 8792.8 11154 12817 27076 7559.7 13351 7594.3 12713 6703.8 9710.4 8951 11940 12475 25753 1 1 1 1 1 1 1 1 1 1 1602 459 1416 1493 1772 1772 750 GFGEYSRSPTF 11 Phospho (STY) _GFGEYSRS(ph)PTF_ GFGEYS(0.005)RS(0.963)PT(0.033)F GFGEY(-41.59)S(-23.28)RS(14.7)PT(-14.7)F 0 0 1 1 Q6UWZ7 Q6UWZ7 Q6UWZ7 FAM175A BRCA1-A complex subunit Abraxas MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.854553222656 2 664.271368 1326.52818 35879.3495387489 1.5961 0.0010602 172490 114.58 172490 114.58 778.853323593297 73.58 0.56644 73.58 73.328 73.895 0 56 19 4 0.699990359000842 0.00246526089172864 0.0835185758148413 0.011016 1 17282 78.744 59.132 4 29230000 25536 40160 23373 34409 22523 25130 29189 35283 38330 23109 24155 37905 23662 35532 23010 25774 29642 35695 37432 22577 1 1 1 1 1 1 1 1 1 1 1603 1283 1417 1494 1773 1773 2285 GFGFGQGAGALVHSE 15 Phospho (STY) _GFGFGQGAGALVHS(ph)E_ GFGFGQGAGALVHS(1)E GFGFGQGAGALVHS(196.8)E 0 0 1 0 P21291 P21291 P21291 CSRP1 Cysteine and glycine-rich protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.910827636719 2 757.327205 1512.63986 33767.9684021571 2.0528 0.0015546 151300 114.58 151300 114.58 871.908343809372 81.624 0.86631 81.624 81.307 82.173 0 86 29 4 0.977640963392204 0.00137564746640582 0.0246912156398517 1.4418E-10 1 19077 196.8 175.5 1 42612000 8334.6 6941.8 8039.7 7551.5 14013 8474.1 14667 11461 8716.4 33432 7885.6 6561.2 8186.8 7731.2 13871 8553.2 14735 12387 8852.9 31745 1 1 1 1 1 1 1 1 1 1 1604 450 1418 1495 1774 1774 732 GFGFVDFNSEEDAK 14 Unmodified _GFGFVDFNSEEDAK_ 0 0 0 0 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.341064453125 3 521.231694 1560.67325 38235.3558901413 2.3326 0.0012158 293100 152.77 293110 152.78 674.341001431871 90.057 0.58598 90.057 89.75 90.336 0 65 19 4 0.969794466849039 0.00685010074226464 0.129989815200793 0.0001829 1 20957 106.32 86.583 1 46753000 13028 12546 14313 11357 13632 13617 15737 13280 13864 18659 12333 11845 14334 11770 13902 13579 15866 13896 13759 17877 1 1 1 1 1 1 1 1 1 1 1605 437 1419 1496 1775 1775 GFGFVTFDDHDPVDK 15 Unmodified _GFGFVTFDDHDPVDK_ 0 0 0 0 P22626 P22626 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.036743164063 3 565.926493 1694.75765 36770.4478993527 1.5881 0.00089876 269960 152.78 269960 152.78 719.036014469485 87.676 0.96211 87.676 87.263 88.225 0 132 32 6 0.995972826939888 0.0173502819197098 0.216934301793766 2.0765E-10 1 20422 177.88 129.74 1 112630000 28722 28884 27519 28882 27581 27648 30248 29680 30193 16099 27174 27285 27785 29636 28024 27824 30660 30177 29794 15846 1 1 1 1 1 1 1 1 1 1 1606 459 1420 1497 1776 1776 GFGSEEGSR 9 Phospho (STY) _GFGS(ph)EEGSR_ GFGS(1)EEGSR GFGS(69.29)EEGS(-69.29)R 0 0 1 0 Q9Y5S9 Q9Y5S9 Q9Y5S9 RBM8A RNA-binding protein 8A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.769653320313 2 503.187304 1004.36005 40081.0587395823 0.71372 0.00035913 227710 114.58 227710 114.58 617.769244718821 37.004 0.5209 37.004 36.72 37.241 0 46 17 3 0.898923841043705 0.00289240906229243 0.0301745371415669 9.2543E-08 1 8323 175.66 120.42 2 82295000 30426 33894 30318 32549 32448 26649 34961 34514 36256 6808.4 28790 32011 30565 33407 32839 27087 35503 34520 35719 7209.7 1 1 1 1 1 1 1 1 1 1 1607 2300 1421 1498 1777 1777 4239 GFQFVSSSLPDICYR 15 Phospho (STY) _GFQFVSSS(ph)LPDICYR_ GFQFVSS(0.196)S(0.804)LPDICYR GFQFVS(-33.75)S(-6.13)S(6.13)LPDICY(-111.28)R 0 0 1 0 P62633 P62633 P62633 CNBP Cellular nucleic acid-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.662780761719 3 619.274338 1854.80119 37714.560573663 1.8002 0.0011148 123350 76.387 123350 76.389 695.996205062596 98.188 0.87241 98.188 97.904 98.777 1.4211E-14 96 29 5 0.957984398623633 0.00406446244894529 0.175150346615529 6.4443E-07 1 22759 146.19 122.71 4 42799000 2856.4 2558.3 1572 1891.2 4872.6 2054.5 4939.1 3174.6 2574.4 8394.7 2698.1 2413 1697.3 1985.1 4748.5 2081.9 4959.6 3393.9 2640.5 7978 1 1 1 1 1 1 1 1 1 1 1608 764 1422 1499 1778 1778 1247 GFSDSGGGPPAK 12 Phospho (STY) _GFS(ph)DSGGGPPAK_ GFS(0.512)DS(0.488)GGGPPAK GFS(0.22)DS(-0.22)GGGPPAK 0 0 1 0 Q9H307 Q9H307 Q9H307 PNN Pinin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.902770996094 2 578.737161 1155.45977 34816.6893353395 2.7128 0.00157 395970 229.16 395970 229.16 807.899894961713 51.205 0.75309 51.205 50.907 51.66 -7.1054E-15 83 25 4 0.624863734495182 0.00260717970930233 0.0263226934226522 5.5321E-07 1 11878 145.29 127.13 2 62818000 62452 45111 60578 47243 90169 61385 96573 66014 45547 12133 59089 42627 61480 48605 89799 60979 96598 66403 47105 12952 1 1 1 1 1 1 1 1 1 1 1609 1926 1423 1500 1779 1779 3494 GFSQYGVSGSPTK 13 Phospho (STY) _GFSQYGVSGS(ph)PTK_ GFSQYGVSGS(0.977)PT(0.023)K GFS(-130.95)QY(-123.9)GVS(-47.52)GS(16.24)PT(-16.24)K 0 0 1 0 Q9NXC5 Q9NXC5 Q9NXC5 MIOS WD repeat-containing protein mio MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.314025878906 3 465.53778 1393.59151 39657.7085134099 1.3165 0.0006129 328170 152.78 328170 152.78 618.313140968861 62.67 0.55645 62.67 62.405 62.961 0 65 18 5 0.973950381424777 0.00601074620234013 0.108980945114595 6.3953E-08 1 14697 172.37 149.13 5 61187000 10089 15486 13077 14277 9001.5 13808 11291 12640 16320 5445.3 9557.9 14622 12950 14725 9412.5 13857 11521 12888 15890 5419.9 1 1 1 1 1 1 1 1 1 1 1610 2063 1424 1501 1780 1780 3730 GFTECEMTKSSPLK 14 Phospho (STY) _GFTECEMTKSS(ph)PLK_ GFTECEMTKS(0.086)S(0.914)PLK GFT(-110.33)ECEMT(-46.52)KS(-10.25)S(10.25)PLK 0 0 1 1 Q9NQW6 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.074951171875 3 565.57703 1693.70926 35129.9475061101 2.2877 0.0012939 405180 229.16 405190 229.16 795.074186091754 66.737 0.48954 66.737 66.544 67.034 0 56 16 4 0.982482542059397 0.00680102691277699 0.128637841957973 2.9205E-08 1 15669 174.78 114.18 4 30043000 32766 31860 35362 30854 11708 35347 11660 28229 36541 18801 31015 30091 35169 31813 13301 35176 12553 29158 34999 18357 1 1 1 1 1 1 1 1 1 1 1611 2010 1425 1502 1781 1781 3648 GGAEQFMEETER 12 Unmodified _GGAEQFMEETER_ 0 0 0 0 Q99832 Q99832 Q99832 CCT7 T-complex protein 1 subunit eta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.877502441406 2 692.295898 1382.57724 33582.8893078423 1.4227 0.00098495 165510 114.58 165510 114.58 806.877800698841 58.881 0.3507 58.881 58.667 59.018 -7.1054E-15 30 11 4 0.657088406343046 0.00113158476782632 0.0347900395461494 0.028851 1 13805 85.402 62.348 1 12078000 24274 26819 25035 25630 20643 24778 23421 24823 27795 15013 22973 25328 25117 26375 21251 24903 23827 25350 27240 14711 1 1 1 1 1 1 1 1 1 1 1612 1793 1426 1503 1782 1782 GGAPDPSPGATATPGAPAQPSSPDAR 26 Phospho (STY) _GGAPDPSPGATATPGAPAQPSS(ph)PDAR_ GGAPDPSPGATATPGAPAQPS(0.293)S(0.707)PDAR GGAPDPS(-129.05)PGAT(-90.35)AT(-59.46)PGAPAQPS(-3.82)S(3.82)PDAR 0 0 1 0 O95365 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.416625976563 3 804.027209 2409.0598 33356.2796372677 1.6985 0.0013656 95006 76.388 95008 76.389 880.749222723487 42.735 0.57575 42.735 42.425 43 0 79 19 6 0.982781210750112 0.00489405553781182 0.034421334686949 2.7372E-12 1 9738 202.18 173.76 5 102010000 9282.6 6493.8 8802.4 6354.3 6445.2 9274.7 6472.8 7707.4 6946.7 4307.6 8781.9 6133.7 8862.4 6579.8 6680.6 9154.6 6600.4 7921.6 6834.2 4234.5 1 1 1 1 1 1 1 1 1 1 1613 242 1427 1504 1783 1783 414 GGDAKSPVLQEK 12 Phospho (STY) _GGDAKS(ph)PVLQEK_ GGDAKS(1)PVLQEK GGDAKS(82.25)PVLQEK 0 0 1 1 A6NFI3 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.375671386719 3 436.878025 1307.61225 38197.4125315921 2.409 0.0010524 524550 229.16 524550 229.16 666.040045102602 48.992 0.65882 48.992 48.651 49.31 0 59 19 4 0.9212552069959 0.00435859025837604 0.0254043604475194 0.0063449 1 11346 82.248 61.867 1 55258000 24099 30984 26261 34740 29402 27291 28518 31592 35508 12413 22812 29291 26356 35321 29646 27765 29262 31896 34739 12419 1 1 1 1 1 1 1 1 1 1 1614 8 1428 1505 1784 1784 19 GGDVSPSPYSSSSWR 15 Phospho (STY) _GGDVS(ph)PSPYSSSSWR_ GGDVS(1)PSPYSSSSWR GGDVS(37.74)PS(-37.74)PY(-91.97)S(-71.78)S(-77.02)S(-82.2)S(-87.9)WR 0 0 1 0 Q14004 Q14004 Q14004 CDK13 Cyclin-dependent kinase 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 939.919921875 2 824.835592 1647.65663 32218.6626996282 1.3456 0.0011099 138910 114.58 138920 114.58 939.416880846441 57.904 0.6112 57.904 57.589 58.201 7.1054E-15 61 20 4 0.676884329410002 0.00129189501644342 0.0268453612489727 1.0227E-06 1 13537 147.7 131.08 7 48001000 44538 18760 45016 18277 22889 49433 22518 29972 20074 12975 42147 17719 45029 19296 24527 47939 22873 31209 19910 12911 1 1 1 1 1 1 1 1 1 1 1615 984 1429 1506 1785 1785 1660 GGETPGSEQWK 11 Phospho (STY) _GGET(ph)PGSEQWK_ GGET(0.923)PGS(0.077)EQWK GGET(10.78)PGS(-10.78)EQWK 0 0 1 0 O60271 O60271 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 857.416320800781 2 628.253175 1254.4918 33974.7013554991 1.1381 0.00071499 364760 229.16 364760 229.16 857.415498027954 54.653 0.50961 54.653 54.387 54.896 7.1054E-15 36 17 3 0.853861397337447 0.000233678120973012 0.00161828028454013 0.00011619 1 12721 127.02 52.177 2 17481000 12582 26745 13326 26256 23837 12436 21241 21611 29994 12766 11909 25262 13500 26767 23541 13221 21986 21706 29224 12520 1 1 1 1 1 1 1 1 1 1 1616 139 1430 1507 1786 1786 4332 GGFDSPFYR 9 Phospho (STY) _GGFDS(ph)PFYR_ GGFDS(1)PFYR GGFDS(40.37)PFY(-40.37)R 0 0 1 0 Q92574 Q92574 Q92574 TSC1 Hamartin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.805297851563 2 563.223689 1124.43283 38339.224886943 1.7074 0.00096165 203440 114.58 203440 114.58 677.804435727514 70.87 0.68876 70.87 70.596 71.285 0 39 23 2 0.7800701611575 0.00058333577836749 0.00530242551056486 0.0017153 1 16643 99.283 63.771 2 14113000 11640 10621 10712 10889 13546 10929 14795 13089 11815 8803.2 11011 10035 10877 11165 13594 10996 14919 13311 11784 8592.2 1 1 1 1 1 1 1 1 1 1 1617 1601 1431 1508 1787 1787 2939 GGGAGGSSVGTGGGGTGGVGGGAGSEDSGDR 31 Phospho (STY) _GGGAGGSSVGTGGGGTGGVGGGAGS(ph)EDSGDR_ GGGAGGSSVGTGGGGTGGVGGGAGS(0.99)EDS(0.01)GDR GGGAGGS(-176.63)S(-170.63)VGT(-138.03)GGGGT(-90.78)GGVGGGAGS(19.89)EDS(-19.89)GDR 0 0 1 0 Q06587 Q06587 Q06587 RING1 E3 ubiquitin-protein ligase RING1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.05615234375 3 825.331908 2472.97389 33126.6757641609 1.7321 0.0014295 92554 76.388 92556 76.389 902.053793507732 31.759 0.35098 31.759 31.589 31.94 0 32 11 4 0.917821217739657 0.00120019884201613 0.0156164913182698 6.3084E-18 1 7116 225.74 211.87 6 10130000 2331 1857.7 2687.9 1569.6 1642.8 2320.9 2141.8 2677.2 2123.5 4119.7 2207 1753.2 2674.2 1641.3 1735.9 2305 2155.7 2795.7 2096.1 3941.2 1 1 1 1 1 1 1 1 1 1 1618 878 1432 1509 1788 1788 1423 GGGGGQDNGLEGLGNDSR 18 Phospho (STY) _GGGGGQDNGLEGLGNDS(ph)R_ GGGGGQDNGLEGLGNDS(1)R GGGGGQDNGLEGLGNDS(393.05)R 0 0 1 0 P08621 P08621 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 984.935729980469 2 870.352668 1738.69078 31300.4946825045 0.5676 0.00049401 131650 114.58 131650 114.58 984.934286370294 47.226 1.2355 47.226 46.858 48.094 0 138 46 4 0.990876372414827 0.00243661297260054 0.0586116335040739 6.5622E-54 1 10862 393.05 333.25 1 143310000 8798 28162 7989.9 28396 16445 7669 18015 19953 32757 8035.1 8322.1 26605 8198.3 28809 16225 8781.3 18666 19780 31696 8027.8 1 1 1 1 1 1 1 1 1 1 1619 335 1433 1510 1789 1789 546 GGGGNFGPGPGSNFR 15 Phospho (STY) _GGGGNFGPGPGS(ph)NFR_ GGGGNFGPGPGS(1)NFR GGGGNFGPGPGS(136.08)NFR 0 0 1 0 P22626 P22626 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.883911132813 2 729.301522 1456.58849 34160.1328446817 1.3891 0.0010131 157110 114.58 157110 114.58 843.882751679541 55.063 0.49673 55.063 54.896 55.393 0 33 16 3 0.713131013265026 0.000564761765150465 0.00800523056908138 2.0766E-05 1 12866 136.08 105.53 1 12867000 17709 20504 16379 18652 15801 18888 16780 19824 19714 14109 16752 19359 16564 19268 16086 18960 17114 20274 19328 13744 1 1 1 1 1 1 1 1 1 1 1620 459 1434 1511 1790 1790 751 GGGPGKSPTQGST 13 Phospho (STY) _GGGPGKS(ph)PTQGST_ GGGPGKS(0.831)PT(0.167)QGS(0.001)T(0.001) GGGPGKS(6.96)PT(-6.96)QGS(-30.72)T(-29.16) 0 0 1 1 Q6P582 Q6P582 Q6P582 MZT2A Mitotic-spindle organizing protein 2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 834.923767089844 2 605.758624 1209.5027 34303.0258361555 2.3439 0.0014198 378310 229.16 378310 229.17 834.92224685762 30.764 0.29991 30.764 30.611 30.911 0 21 9 3 0.94617748200861 0.00108620897623648 0.0620892979737483 0.00016184 1 6874 115.3 93.293 4 9928300 17379 18925 17388 19866 13257 16084 13267 19458 20720 10197 16445 17883 17458 20279 13705 16352 13708 19694 20128 10052 1 1 1 1 1 1 1 1 1 1 1621 1262 1435 1512 1791 1791 2238 GGGQSVQFTDIETLKQESPNGSR 23 Phospho (STY) _GGGQSVQFTDIETLKQES(ph)PNGSR_ GGGQSVQFTDIETLKQES(0.994)PNGS(0.006)R GGGQS(-149.41)VQFT(-126.47)DIET(-52.95)LKQES(21.91)PNGS(-21.91)R 0 0 1 1 Q02241 Q02241 Q02241 KIF23 Kinesin-like protein KIF23 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 992.165588378906 3 839.053535 2514.13878 32414.6261471298 2.4327 0.0020411 182080 152.78 182080 152.78 992.500005816139 73.97 0.40533 73.97 73.812 74.218 0 32 13 3 0.962096040255298 0.00210625032538687 0.0235673836255532 5.9329E-09 1 17367 173.09 150.87 5 13189000 5038.3 13537 5691 12651 4390.4 4565.9 4381.8 8937.8 13361 25129 4770 12783 5677.1 12914 4540.6 5039.7 4706.5 9553 12802 23869 1 1 1 1 1 1 1 1 1 1 1622 849 1436 1513 1792 1792 1371 GGLSPANDTGAK 12 Phospho (STY) _GGLS(ph)PANDTGAK_ GGLS(1)PANDTGAK GGLS(53.48)PANDT(-53.48)GAK 0 0 1 0 P30419 P30419 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 813.420349121094 2 584.255717 1166.49688 34324.2617570618 2.8419 0.0016604 392230 229.16 392230 229.16 813.418661011791 46.002 0.97002 46.002 45.466 46.436 0 123 32 6 0.99341516738261 0.00355411845137447 0.0580684955560814 4.8279E-11 1 10557 199.84 147.85 2 389500000 67539 72698 67708 68127 40976 61944 44304 63879 77176 18208 63909 68649 67847 70131 43239 62424 45838 64549 74755 18624 1 1 1 1 1 1 1 1 1 1 1623 517 1437 1514 1793 1793 844 GGLSPANDTGAK 12 Phospho (STY) _GGLS(ph)PANDTGAK_ GGLS(1)PANDTGAK GGLS(55.72)PANDT(-55.72)GAK 0 0 1 0 P30419 P30419 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.615356445313 3 389.83957 1166.49688 42262.5490919008 2.0298 0.00079128 391890 152.77 391890 152.78 542.614744306251 45.998 0.87775 45.998 45.614 46.491 0 115 29 5 0.351308953434253 0.00172526735282691 0.03960439521781 0.0050058 1 10663 86.548 56.804 2 154240000 18072 16114 18336 18178 14109 18900 13283 16165 19047 3374.2 17102 15234 18395 18550 14561 18885 13718 16422 18549 3551.3 1 1 1 1 1 1 1 1 1 1 1624 517 1437 1514 1794 1794 844 GGNFGFGDSR 10 Phospho (STY) _GGNFGFGDS(ph)R_ GGNFGFGDS(1)R GGNFGFGDS(70.68)R 0 0 1 0 P22626 P22626 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.791381835938 2 547.20857 1092.40259 38874.3479901929 1.784 0.00097621 209390 114.58 209390 114.58 661.789763160509 59.621 0.77113 59.621 59.365 60.136 0 67 26 4 0.817009825077023 0.00138347706667245 0.0647350574502842 0.016071 1 13942 70.685 51.939 1 22495000 22007 15589 21012 17210 21831 22170 21437 19808 16022 5869.5 20821 14735 21225 17651 22095 21982 21692 20137 16039 5985.2 1 1 1 1 1 1 1 1 1 1 1625 459 1438 1515 1795 1795 752 GGPASPGGLQGLETR 15 Phospho (STY) _GGPAS(ph)PGGLQGLETR_ GGPAS(1)PGGLQGLETR GGPAS(52.72)PGGLQGLET(-52.72)R 0 0 1 0 Q8NCD3 Q8NCD3 Q8NCD3 HJURP Holliday junction recognition protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.428649902344 2 738.845762 1475.67697 34137.5974253546 1.4721 0.0010877 155080 114.58 155080 114.58 853.428074720244 60.405 0.60642 60.405 60.079 60.685 0 43 20 3 0.98930062059266 0.00247952302967607 0.187627754486938 6.9986E-07 1 14170 156.64 119.66 2 25953000 17130 20790 18618 20432 12127 17588 11929 17423 22831 19364 16215 19637 18582 20955 12697 17791 12451 18066 22065 18636 1 1 1 1 1 1 1 1 1 1 1626 1495 1439 1516 1796 1796 2743 GGPEGVAAQAVASAASAGPADAEMEEIFDDASPGK 35 Phospho (STY) _GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(ph)PGK_ GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(1)PGK GGPEGVAAQAVAS(-169.05)AAS(-137.17)AGPADAEMEEIFDDAS(137.17)PGK 0 0 1 0 O60264 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.203430175781 4 839.118342 3352.44426 31526.168724449 1.639 0.0013753 136550 114.58 136550 114.58 954.201105642471 100.53 0.30549 100.53 100.37 100.67 0 25 10 5 0.974366715451947 0.0108986631790104 0.13019295662175 3.9537E-18 1 23520 214.9 201.72 3 90551000 4420.7 4754.1 4236.9 6370.3 5141.3 5037.3 3815.1 7637.4 5598.6 104070 4182.4 4500.2 4285.4 6420.7 5147 5337.2 3996 10696 5448.5 98167 1 1 1 1 1 1 1 1 1 1 1627 138 1440 1517 1797 1797 233 GGPGAAPGGASPASSSSAASSPSSGR 26 Phospho (STY) _GGPGAAPGGASPAS(ph)SSSAASSPSSGR_ GGPGAAPGGAS(0.085)PAS(0.825)S(0.086)S(0.002)S(0.001)AAS(0.001)S(0.001)PSSGR GGPGAAPGGAS(-9.88)PAS(9.82)S(-9.82)S(-26.61)S(-29.5)AAS(-29.21)S(-31.2)PS(-40.63)S(-45.29)GR 0 0 1 0 Q9BXK1 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.704895019531 3 732.316871 2193.92878 35323.1775147879 1.9166 0.0014036 104310 76.387 104310 76.389 809.038611045839 31.43 0.4937 31.43 31.152 31.645 0 49 16 4 0.919004283245238 0.0016101448400908 0.0222741897257437 1.3857E-08 1 7009 172.98 158.22 9 19374000 4919.4 3346.7 5923.7 3451.7 3174.2 5706.3 3478.1 3289.8 4208 3779 4658.8 3162.1 5874 3573.9 3388.5 5595.9 3545.8 3507.5 4121.1 3634.5 1 1 1 1 1 1 1 1 1 1 1628 1863 1441 1518 1798 1798 3397 GGPGKLSPR 9 Phospho (STY) _GGPGKLS(ph)PR_ GGPGKLS(1)PR GGPGKLS(89.27)PR 0 0 1 1 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.8994140625 2 474.736767 947.45898 37145.7725441074 1.2163 0.00057741 482720 229.16 482720 229.16 703.900034756822 37.045 0.5209 37.045 36.72 37.241 -7.1054E-15 53 17 4 0.990525239277162 0.00204405008001522 0.0246851860182368 0.0060553 1 8331 89.266 58.874 1 85665000 27929 40441 25652 40874 26343 23066 28496 33945 43922 4417.8 26420 38206 25974 41656 26737 24060 29325 33761 42684 4945.5 1 1 1 1 1 1 1 1 1 1 1629 911 1442 1519 1799 1799 1498 GGPGSAVSPYPTFNPSSDVAALHK 24 Phospho (STY) _GGPGSAVS(ph)PYPTFNPSSDVAALHK_ GGPGS(0.015)AVS(0.976)PY(0.003)PT(0.006)FNPSSDVAALHK GGPGS(-18.11)AVS(18.11)PY(-24.83)PT(-22.34)FNPS(-80.52)S(-83.62)DVAALHK 0 0 1 0 P04083 P04083 P04083 ANXA1 Annexin A1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 965.488220214844 3 812.712561 2435.11585 33183.4979303962 1.6945 0.0013771 187980 152.77 187980 152.78 965.821510849303 80.314 0.41583 80.314 80.075 80.491 -1.4211E-14 25 13 3 0.82202193156678 0.000903457318175591 0.00847035050027555 3.0244E-06 1 18797 137.4 121.81 6 11527000 2921.2 4795.1 3506 5540.7 3240.1 2636.3 2894.7 5409.5 6363 19801 2766.4 4534 3492.8 5596.8 3302.1 2844.2 3058.1 5915.3 6131.3 18771 1 1 1 1 1 1 1 1 1 1 1630 290 1443 1520 1800 1800 482 GGPLQALTRESTR 13 Phospho (STY) _GGPLQALTRES(ph)TR_ GGPLQALT(0.003)RES(0.921)T(0.076)R GGPLQALT(-25.46)RES(10.81)T(-10.81)R 0 0 1 1 P42167 P42167 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 565.631774902344 3 489.243479 1464.70861 40944.7568586466 1.4099 0.00068978 156130 76.388 156140 76.388 565.631146523883 61.945 1.2838 61.945 61.302 62.586 0 103 43 3 0.851462760402234 0.00201385757871685 0.0279740485394097 3.1491E-05 1 14486 131.84 91.111 3 26251000 9036.4 7678.6 9145.3 7654.7 6742.5 11538 7041.7 8785.8 7698.3 2735.9 8551.1 7253.6 9173.6 7923.5 6989 11363 7171.5 9001.9 7568.1 2779.5 1 1 1 1 1 1 1 1 1 1 1631 582 1444 1521 1801 1801 941 GGQGDPAVPAQQPADPSTPER 21 Phospho (STY) _GGQGDPAVPAQQPADPST(ph)PER_ GGQGDPAVPAQQPADPS(0.182)T(0.818)PER GGQGDPAVPAQQPADPS(-6.54)T(6.54)PER 0 0 1 0 O15231 O15231 O15231 ZNF185 Zinc finger protein 185 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.376708984375 3 718.986573 2153.93789 33652.9053706932 1.4606 0.0010501 106250 76.389 106250 76.39 796.043993572723 39.695 0.49715 39.695 39.364 39.861 0 38 16 4 0.99489554939397 0.00313990069221248 0.0390998217237993 0.0069888 1 9005 89.773 66.871 2 34359000 10053 6997.3 10807 6156.5 7303.1 10816 7377.8 7668.3 6366.4 4143.9 9515.8 6605.3 10796 6447.5 7618.3 10602 7478.7 7938.7 6324.7 4079.4 1 1 1 1 1 1 1 1 1 1 1632 84 1445 1522 1802 1802 4324 GGSGSGPTIEEVD 13 Phospho (STY) _GGSGS(ph)GPTIEEVD_ GGS(0.032)GS(0.967)GPT(0.001)IEEVD GGS(-14.85)GS(14.85)GPT(-29.35)IEEVD 0 0 1 0 P08107 P08107 P08107 HSPA1A Heat shock 70 kDa protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.3359375 2 642.753205 1283.49186 36036.8070507099 1.3902 0.00089354 178270 114.58 178270 114.58 757.334752344659 55.292 0.60892 55.292 55.044 55.653 0 47 20 3 0.874791451657807 0.000799008912121312 0.0105482771362646 1.0493E-06 1 12888 140.09 125.42 3 18511000 13192 14297 14667 14880 12741 14848 12363 14775 18142 24799 12489 13509 14659 15242 13044 14930 12761 15570 17655 23693 1 1 1 1 1 1 1 1 1 1 1633 328 1446 1523 1803 1803 536;537 GGSGSGPTIEEVD 13 Phospho (STY) _GGS(ph)GSGPTIEEVD_ GGS(0.992)GS(0.008)GPTIEEVD GGS(21.2)GS(-21.2)GPT(-92.57)IEEVD 0 0 1 0 P08107 P08107 P08107 HSPA1A Heat shock 70 kDa protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.333190917969 2 642.753205 1283.49186 34584.4631428329 1.6244 0.0010441 178260 114.58 178270 114.58 757.33253378793 56.347 0.5082 56.347 56.126 56.634 0 39 16 3 0.994614569459388 0.00198204282102767 0.05303638596598 3.8328E-11 1 13165 207.44 190.27 3 22062000 11997 12753 11243 13191 9756.7 11057 8492.2 11481 12909 18442 11350 12050 11344 13483 9975.2 11218 8826 12055 12550 17631 1 1 1 1 1 1 1 1 1 1 1634 328 1446 1523 1804 1804 536;537 GGSGSVLQDEEVLASLER 18 Phospho (STY) _GGSGS(ph)VLQDEEVLASLER_ GGS(0.44)GS(0.56)VLQDEEVLASLER GGS(-1.05)GS(1.05)VLQDEEVLAS(-96.81)LER 0 0 1 0 Q9NZ09 Q9NZ09 Q9NZ09 UBAP1 Ubiquitin-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.021240234375 3 642.633248 1924.87792 38015.3330634204 1.7779 0.0011426 118870 76.388 118870 76.389 719.355532839181 97.735 0.54862 97.735 97.414 97.963 0 45 18 3 0.879606539161808 0.00115902107485746 0.0124975226719278 5.3843E-05 1 22713 109.84 91.011 3 7640000 4330.5 5166.8 4161.2 4838 3932.3 5091.4 5191.5 4988 5010.7 12671 4097.1 4879 4199.4 4991.6 4021.6 5114.6 5219 5389.2 4951.8 12046 1 1 1 1 1 1 1 1 1 1 1635 2078 1447 1524 1805 1805 3768 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-225.99)IS(-212.68)VQVNS(-127.26)IKFDS(127.26)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.047546386719 3 582.93638 1745.78731 36185.6990190961 1.8592 0.0010838 262080 152.78 262080 152.78 736.046030431319 80.179 5.8476 80.179 79.106 84.953 0 819 202 7 0.97182755308521 0.0434305533404237 1 8.517E-17 6 19035 247.36 220.93 4 1092300000 50453 50237 62151 63132 80223 45540 75973 94592 71957 1494200 47785 47530 62123 63753 80280 49861 77428 138000 71171 1409100 6 6 6 6 6 6 6 6 6 6 1636 1035 1448 1525 1806;1807;1808;1809;1810;1811 1808 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNS(0.003)IKFDS(0.997)E GGS(-80.54)IS(-61.69)VQVNS(-25.64)IKFDS(25.64)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1103.06604003906 2 873.900931 1745.78731 29903.1244330568 1.7228 0.0015055 262230 229.16 262230 229.16 1103.56535973145 80.197 3.7968 80.197 79.644 83.441 0 437 130 5 0.424859830581012 0.000888793541789519 0.0476029828626426 1.9798E-07 1 19508 167.99 147.88 4 203970000 4475.2 6043.6 5370.7 7473.3 8678.1 5492.1 8549 9254.2 6921.2 61372 4238 5717.4 5396.8 7554.2 8607.9 5756.2 8663.8 10986 6898.2 58003 1 1 1 1 1 1 1 1 1 1 1637 1035 1448 1525 1812 1812 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-206.73)IS(-193.1)VQVNS(-100.75)IKFDS(100.75)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.046752929688 3 582.93638 1745.78731 36185.6526966604 1.7456 0.0010176 262080 152.77 262080 152.78 736.045037577541 84.431 3.5141 84.431 84.102 87.616 1.4211E-14 267 121 3 0.965643322310245 0.00900059652731037 0.10435966259025 5.5911E-16 3 19742 228.85 202.7 4 34016000 19386 22487 23046 20928 23560 23057 27489 26075 25240 135470 18358 21234 23009 21618 23932 23309 27731 30120 25000 128160 3 3 3 3 3 3 3 3 3 3 1638 1035 1448 1525 1813;1814;1815 1813 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-143.18)IS(-133.81)VQVNS(-77.03)IKFDS(77.03)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.714294433594 3 582.93638 1745.78731 36330.9286165193 1.9732 0.0011503 262080 152.78 262080 152.78 736.045896548085 88.652 1.0384 88.652 88.396 89.434 0 66 35 2 0.985796376098787 0.00440953984972229 0.0983706027584932 3.5732E-07 1 20666 153.86 130.72 4 18841000 7056.2 5849.6 6914.3 6048.6 7860.4 6592.8 6995.9 7512.3 6110.5 23801 6676.5 5527 6980.4 6207.1 7907.8 6640.3 7138.5 8216.9 6066.8 22585 1 1 1 1 1 1 1 1 1 1 1639 1035 1448 1525 1816 1816 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-161.54)IS(-153.56)VQVNS(-92.49)IKFDS(92.49)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.713439941406 3 582.93638 1745.78731 36330.9066015566 1.8462 0.0010762 262080 152.78 262080 152.78 736.045534580922 91.789 0.88573 91.789 91.568 92.454 0 44 30 2 0.483879504203086 0.00049923675162227 0.0188249207034465 9.429E-11 1 21353 190.67 171.59 4 9462800 3600.8 4812.2 3917 4894.4 4846.1 3345.4 5685.5 4949.5 4263 20797 3408.4 4546.3 3938.9 4995.5 4873.5 3481.7 5708.1 5529.2 4266.7 19698 1 1 1 1 1 1 1 1 1 1 1640 1035 1448 1525 1817 1817 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-184.11)IS(-175.24)VQVNS(-103.77)IKFDS(103.77)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.710266113281 3 582.93638 1745.78731 36754.1223911402 1.9955 0.0011633 262080 152.78 262080 152.78 735.711167500037 94.483 0.57468 94.483 94.253 94.827 0 40 19 3 0.885582221822893 0.0015988465846707 0.0364963832292756 4.9364E-11 1 21988 201.48 178.34 4 9234800 2740.9 2700.1 3867.4 2571.5 4524.9 3866 5512.6 4008.1 3532.9 25477 2597.8 2549.9 3839.4 2669 4565.2 3867.1 5509.7 4782.6 3569.9 24083 1 1 1 1 1 1 1 1 1 1 1641 1035 1448 1525 1818 1818 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-111.9)IS(-106.61)VQVNS(-68.12)IKFDS(68.12)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.047729492188 3 582.93638 1745.78731 36749.0732668708 2.0992 0.0012237 262080 152.78 262080 152.78 735.711862135749 95.937 0.9845 95.937 95.333 96.318 1.4211E-14 63 33 3 0.614647531102494 0.00131763589837953 0.0614846451114464 5.0959E-05 1 22331 124.2 93.241 4 7206200 3102.9 2780.7 3572.1 3676.1 3390.4 3156.3 3947.1 3956.3 3313 17754 2937.9 2631.9 3568.8 3711.5 3458.6 3230.4 3973.7 4472.4 3295.8 16809 1 1 1 1 1 1 1 1 1 1 1642 1035 1448 1525 1819 1819 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-141.43)IS(-137.2)VQVNS(-77.45)IKFDS(77.45)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.711975097656 3 582.93638 1745.78731 37211.1089336727 2.0045 0.0011685 262080 152.78 262080 152.78 736.046178401703 97.171 0.92272 97.171 96.808 97.731 0 61 31 3 0.949073809840246 0.00213745731406153 0.025648374743564 4.3042E-07 1 22551 149.33 122.89 4 6071100 2876.8 3033.8 3009 3251.5 3959.8 3430.9 3534.5 3645 2866.9 15701 2722.7 2867.1 3033.1 3328.1 3955.6 3463.2 3599.9 4121 2857.1 14868 1 1 1 1 1 1 1 1 1 1 1643 1035 1448 1525 1820 1820 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-189.29)IS(-183.02)VQVNS(-100.82)IKFDS(100.82)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.712829589844 3 582.93638 1745.78731 37211.0601060031 2.142 0.0012487 262080 152.77 262080 152.78 735.710862044592 98.497 1.2453 98.497 97.674 98.92 0 106 42 3 0.930218890566521 0.00155225500658062 0.0478045929241502 3.6958E-12 1 22804 212.47 186.03 4 10359000 2942.6 3021.4 2483.6 3288.9 4322.2 2576 4289 3705.8 4038.6 19995 2782.8 2855.7 2549.7 3349.2 4276.9 2665.7 4360.5 4275.9 3995.5 18914 1 1 1 1 1 1 1 1 1 1 1644 1035 1448 1525 1821 1821 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-177.59)IS(-171.18)VQVNS(-87.58)IKFDS(87.58)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.710815429688 3 582.93638 1745.78731 37904.6044090339 1.6167 0.00094243 262080 152.78 262080 152.78 736.045724086674 102.45 0.81384 102.45 102.13 102.94 0 46 27 2 0.882508448496071 0.00127694350607856 0.0208254879303585 4.8839E-11 1 24156 201.61 169.85 4 6469400 2975.8 3256.3 2933.5 3472.1 2763.9 3142.2 2995 4097.7 2780.8 22889 2815.7 3077.4 2954.6 3546.6 2817.9 3219.4 3031.7 4762.9 2752.9 21647 1 1 1 1 1 1 1 1 1 1 1645 1035 1448 1525 1822 1822 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-160.74)IS(-146.79)VQVNS(-78.14)IKFDS(78.14)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.046142578125 3 582.93638 1745.78731 37195.4342111339 2.0139 0.001174 262080 152.78 262080 152.78 736.045653177166 103.25 1.6822 103.25 102.92 104.6 0 94 58 2 0.712734878742327 0.000423645991658619 0.00602596461660711 1.2348E-10 2 24397 183.65 157.21 4 7578800 2658.2 3914.9 2607.2 3212.2 3553.5 2030 3504.7 3124.5 3225.6 26442 2515.2 3694.3 2639.7 3322.1 3549.2 2151 3562.1 3888.5 3194.5 24970 2 2 2 2 2 2 2 2 2 2 1646 1035 1448 1525 1823;1824 1823 1779 GGSISVQVNSIKFDSE 16 Phospho (STY) _GGSISVQVNSIKFDS(ph)E_ GGSISVQVNSIKFDS(1)E GGS(-184.12)IS(-173.9)VQVNS(-104.46)IKFDS(104.46)E 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.047241210938 3 582.93638 1745.78731 37195.428112529 2.4443 0.0014249 262080 152.77 262080 152.78 736.045360003012 104.83 1.7615 104.83 104.6 106.36 -1.4211E-14 95 68 2 0.723909764670108 0.00137132747607756 0.00931533637571534 8.895E-11 2 24734 191.95 165.52 4 3752200 662.47 1072.4 888.68 1501 1330.5 780.31 1694.1 1352.1 1169.4 13624 627.72 1012.8 887.94 1503.4 1328.7 847.14 1692.6 1744.6 1176.1 12860 2 1 2 2 2 2 2 2 2 2 1647 1035 1448 1525 1825;1826 1825 1779 GGSLPKVEAK 10 Phospho (STY) _GGS(ph)LPKVEAK_ GGS(1)LPKVEAK GGS(78.51)LPKVEAK 0 0 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.012817382813 3 355.849518 1064.52673 40436.3169135945 1.5001 0.0005338 643990 229.16 643990 229.16 585.011884966599 55.046 0.60864 55.046 54.698 55.307 -7.1054E-15 70 20 4 0.919662868147202 0.0020967210355563 0.0114834880118984 0.0071523 1 12803 78.505 54.674 1 119210000 17168 33761 14894 36451 21628 16052 18258 23982 34604 3816.3 16237 31908 15205 36935 21518 17107 19195 23864 33451 4148.6 1 1 1 1 1 1 1 1 1 1 1648 315 1449 1526 1827 1827 518 GGSLPPVK 8 Phospho (STY) _GGS(ph)LPPVK_ GGS(1)LPPVK GGS(73.98)LPPVK 0 0 1 0 Q13330 Q13330 Q13330 MTA1 Metastasis-associated protein MTA1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.873474121094 2 417.709686 833.40482 NaN NaN NaN NaN NaN NaN NaN NaN 55.364 1 55.364 54.864 55.864 0 NaN NaN NaN 0.028195 1 12924 73.985 42.613 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1649 946 1450 1527 1828 1828 1572 GGSLPPVKR 9 Phospho (STY) _GGS(ph)LPPVKR_ GGS(1)LPPVKR GGS(62.41)LPPVKR 0 0 1 1 Q13330 Q13330 Q13330 MTA1 Metastasis-associated protein MTA1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 483.618377685547 3 330.842587 989.505931 45581.069314321 1.0398 0.00034402 461780 152.78 461780 152.78 483.61812417769 44.006 1.6542 44.006 43.668 45.323 -7.1054E-15 94 56 3 0.874840205959353 0.000947942512270791 0.0175486207812955 0.015714 1 10150 62.408 43.313 1 10686000 16246 9308.1 17680 10023 15622 18191 15419 15303 10454 1794.9 15379 8797.1 17695 10379 15967 17836 15569 15516 10526 2044.3 1 1 1 1 1 1 1 1 1 1 1650 946 1451 1528 1829 1829 1572 GGSPDLWK 8 Phospho (STY) _GGS(ph)PDLWK_ GGS(1)PDLWK GGS(128.81)PDLWK 0 0 1 0 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.366516113281 2 470.202225 938.389898 36912.4963909195 2.1294 0.0010012 487370 229.16 487370 229.16 699.365540952007 70.893 2.1208 70.893 70.333 72.454 0 189 72 5 0.842236661214432 0.0318087112093857 0.333255756218605 0.0004422 1 16624 128.81 93.366 1 504290000 417360 231770 408310 254100 331390 405830 331010 347680 242290 11300 394900 219080 410730 261980 340750 399300 334530 351340 242830 18687 1 1 1 1 1 1 1 1 1 1 1651 1699 1452 1529 1830 1830 3122 GGSPQMDDIK 10 Phospho (STY) _GGS(ph)PQMDDIK_ GGS(1)PQMDDIK GGS(120.9)PQMDDIK 0 0 1 0 Q13144 Q13144 Q13144 EIF2B5 Translation initiation factor eIF-2B subunit epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.390380859375 2 564.225571 1126.43659 35107.3353025732 1.4918 0.00084172 406150 229.16 406160 229.16 793.389185545377 54.705 1.1471 54.705 54.36 55.507 7.1054E-15 118 39 5 0.776131125236665 0.00190613507115855 0.00903027589082497 0.00021637 2 12726 120.9 68.406 1 117540000 63833 85740 65694 88411 81300 61606 85450 86002 94140 32017 60409 81011 66242 90184 81649 63313 87019 86286 92520 32139 2 2 2 2 2 2 2 2 2 2 1652 929 1453 1530 1831;1832 1832 1530 GGSPQMDDIKVFQNEVLGTLQR 22 Phospho (STY) _GGS(ph)PQMDDIKVFQNEVLGTLQR_ GGS(1)PQMDDIKVFQNEVLGTLQR GGS(135.55)PQMDDIKVFQNEVLGT(-135.55)LQR 0 0 1 1 Q13144 Q13144 Q13144 EIF2B5 Translation initiation factor eIF-2B subunit epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 991.179565429688 3 838.068239 2511.18289 31203.5072236098 1.8723 0.0015691 182300 152.78 182300 152.78 991.176958539656 100.55 0.11391 100.55 100.48 100.59 0 11 3 4 0.974620792273987 0.00265131756444392 0.0318204086608955 6.6973E-09 1 23529 172.83 152.93 2 57154000 11964 17986 14539 16261 23565 14347 27742 24415 19056 90031 11330 16981 14610 16771 23431 14762 27801 26813 19171 85340 1 1 1 1 1 1 1 1 1 1 1653 929 1454 1531 1833 1833 1530 GGSREYDTGGGSSSSR 16 Phospho (STY) _GGS(ph)REYDTGGGSSSSR_ GGS(1)REYDTGGGSSSSR GGS(53.3)REY(-74.38)DT(-53.3)GGGS(-72.94)S(-76.06)S(-87.72)S(-99.77)R 0 0 1 1 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 623.606079101563 3 547.216317 1638.62712 39801.986703541 1.5945 0.00087253 139590 76.388 139590 76.389 623.604178307058 23.747 0.37939 23.747 23.585 23.964 0 30 12 4 0.698796454002138 0.00506369116374665 0.0473117796082069 8.7699E-05 1 5312 113.63 88.753 7 10094000 2443.4 3746.8 3432 3906.2 3208.9 3116.7 4279.4 3946.6 3861.8 1464.1 2315.8 3540.4 3398.3 3988.3 3284.3 3172.4 4293.2 3970.7 3828.2 1470 1 1 1 1 1 1 1 1 1 1 1654 1755 1455 1532 1834 1834 3220 GGSSKDLLDNQSQEEQR 17 Phospho (STY) _GGSS(ph)KDLLDNQSQEEQR_ GGS(0.262)S(0.738)KDLLDNQSQEEQR GGS(-4.5)S(4.5)KDLLDNQS(-57.71)QEEQR 0 0 1 1 O43432 O43432 O43432 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 810.730224609375 3 657.61989 1969.83784 34880.0186454006 1.1725 0.00077103 232320 152.78 232320 152.78 810.395536302001 48.269 0.46693 48.269 48.038 48.505 0 57 15 5 0.81864787271305 0.00483319719877572 0.0472101055793378 1.4898E-11 1 11195 208.73 181.23 3 37066000 35639 18790 40068 21377 31353 38160 33981 31834 24076 7670.4 33740 17765 39989 22061 32359 37436 34192 32408 24176 7959.4 1 1 1 1 1 1 1 1 1 1 1655 112 1456 1533 1835 1835 190;191 GGSSKDLLDNQSQEEQRR 18 Phospho (STY) _GGS(ph)SKDLLDNQSQEEQRR_ GGS(0.956)S(0.044)KDLLDNQSQEEQRR GGS(13.4)S(-13.4)KDLLDNQS(-65)QEEQRR 0 0 1 2 O43432 O43432 O43432 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.764465332031 3 709.653594 2125.93895 33749.5551905907 1.6051 0.0011391 215280 152.78 215280 152.78 862.763359651166 43.323 0.40263 43.323 43.09 43.492 7.1054E-15 48 13 5 0.820040992396845 0.00405536924675143 0.0177273682527604 2.3872E-05 1 9933 130.83 110.57 3 46346000 39658 17133 42759 17832 26329 43775 28724 30944 21178 9620.5 37538 16189 42681 18684 27716 42577 28917 31826 21216 9775 1 1 1 1 1 1 1 1 1 1 1656 112 1457 1534 1836 1836 190;191 GGSTVPK 7 Phospho (STY) _GGS(ph)TVPK_ GGS(0.85)T(0.15)VPK GGS(7.54)T(-7.54)VPK 0 0 1 0 Q92504 Q92504 Q92504 SLC39A7 Zinc transporter SLC39A7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.328247070313 2 363.165112 724.31567 39809.0112468893 0.92445 0.00033573 631020 229.16 631020 229.16 592.32801882473 34.34 0.44508 34.34 34.105 34.55 0 30 14 3 0.840832518054577 0.000900308764751978 0.00781572800771091 0.035093 1 7668 58.596 26.662 2 109880000 28937 27027 30771 26907 29682 27569 30815 29187 26498 2671.3 27389 25531 30868 27646 30198 27629 31195 29295 26329 3190.9 1 1 1 1 1 1 1 1 1 1 1657 1591 1458 1535 1837 1837 2922;4708 GGTSQVGSPTLLSPAVPSK 19 Phospho (STY) _GGTSQVGS(ph)PTLLSPAVPSK_ GGT(0.034)S(0.03)QVGS(0.84)PT(0.095)LLS(0.001)PAVPSK GGT(-13.99)S(-14.48)QVGS(9.45)PT(-9.45)LLS(-30.71)PAVPS(-50.21)K 0 0 1 0 Q8IY92 Q8IY92 Q8IY92 SLX4 Structure-specific endonuclease subunit SLX4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.090515136719 3 621.646829 1861.91866 35644.1231718889 2.3187 0.0014414 245760 152.77 245760 152.78 774.756242239387 75.032 0.54775 75.032 74.766 75.314 0 58 18 5 0.726581758325148 0.00318869416738634 0.0262676450668955 0.028473 1 17612 54.656 33.993 6 20368000 9072 9180.8 9976.7 10081 8843.9 9327.2 7314.7 10231 9273 48476 8587.8 8677.9 9977.2 10284 9021.9 9485.4 7572.8 11688 9066.6 45882 1 1 1 1 1 1 1 1 1 1 1658 1435 1459 1536 1838 1838 2618 GGTTSWGTSGQPSPSYDSSR 20 Phospho (STY) _GGTTSWGTSGQPS(ph)PSYDSSR_ GGTTSWGTSGQPS(0.992)PS(0.008)YDSSR GGT(-140.19)T(-142.42)S(-133.06)WGT(-75.83)S(-65.25)GQPS(21.03)PS(-21.03)Y(-173.27)DS(-93.57)S(-107.68)R 0 0 1 0 Q99081 Q99081 Q99081 TCF12 Transcription factor 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1162.50634765625 2 1047.92365 2093.83276 29461.5327484816 1.9439 0.002037 109340 114.58 109340 114.58 1163.00671831296 49.555 0.64247 49.555 49.283 49.925 0 62 21 4 0.984630739721063 0.00079488237210542 0.0129286131318543 1.6905E-53 1 11520 371.36 343.25 10 15784000 2822.6 8873.6 3478.2 6914 6810.6 3991.9 7993.6 7506.3 8319.5 2942.9 2673.3 8371.4 3507.6 7171.8 6731.7 4181.3 8088.9 7481.8 8195 2944.8 1 1 1 1 1 1 1 1 1 1 1659 1761 1460 1537 1839 1839 3248 GGVTGSPEASISGSK 15 Phospho (STY) _GGVTGS(ph)PEASISGSK_ GGVT(0.181)GS(0.819)PEASISGSK GGVT(-6.55)GS(6.55)PEAS(-51.92)IS(-93.2)GS(-102.09)K 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.990661621094 3 471.880094 1412.61845 39423.0791442628 1.3162 0.00062109 323760 152.78 323760 152.78 624.655472915752 52.705 0.66022 52.705 52.238 52.899 0 70 22 5 0.926383706825321 0.0095549441786519 0.193054569593749 4.3673E-05 1 12244 129.05 114.08 5 93035000 29227 23378 29778 24242 9166.6 30859 6871.7 23684 26341 4986.1 27659 22089 29696 24945 10505 30556 7638.2 24185 25165 5243.1 1 1 1 1 1 1 1 1 1 1 1660 896 1461 1538 1840 1840 1464 GHASAPYFGK 10 Phospho (STY) _GHAS(ph)APYFGK_ GHAS(0.953)APY(0.047)FGK GHAS(13.1)APY(-13.1)FGK 0 0 1 0 Q8N183 Q8N183 Q8N183 NDUFAF2 Mimitin, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 525.273071289063 3 372.162096 1113.46446 42609.2794402287 0.79993 0.0002977 410510 152.78 410510 152.78 524.937688099174 55.278 0.52076 55.278 54.986 55.507 0 45 17 3 0.945187021878461 0.00175424042810294 0.0114556121643515 0.032021 1 12887 48.513 32.289 2 16318000 9382.6 11890 9791.5 13736 8024.6 9395.7 9697.2 10711 14833 3370.8 8879.9 11243 9817.5 13921 8276.2 9634.4 9931.3 10795 14418 3421.9 1 1 1 1 1 1 1 1 1 1 1661 1452 1462 1539 1841 1841 2689 GHASAPYFGKEEPSVAPSSTGK 22 Phospho (STY) _GHAS(ph)APYFGKEEPSVAPSSTGK_ GHAS(1)APYFGKEEPSVAPSSTGK GHAS(76.72)APY(-97.14)FGKEEPS(-76.72)VAPS(-116.07)S(-123.83)T(-130.04)GK 0 0 1 1 Q8N183 Q8N183 Q8N183 NDUFAF2 Mimitin, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.886779785156 4 571.762499 2283.02089 36248.7887971429 2.216 0.001267 300600 171.87 300600 171.87 743.885758214881 59.35 0.54532 59.35 59.075 59.621 -7.1054E-15 68 18 5 0.981563252267731 0.00607600619314066 0.08400134330726 9.2549E-12 1 13911 188.37 156.99 6 30380000 11041 20463 11914 22158 15958 13647 17519 20548 25450 22132 10451 19340 11999 22511 15985 14187 17975 21011 24775 21316 1 1 1 1 1 1 1 1 1 1 1662 1452 1463 1540 1842 1842 2689 GHSPAQKPK 9 Phospho (STY) _GHS(ph)PAQKPK_ GHS(1)PAQKPK GHS(140.24)PAQKPK 0 0 1 1 Q14966 Q14966 Q14966 ZNF638 Zinc finger protein 638 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.997619628906 3 343.834091 1028.48044 41275.9025511288 2.1539 0.00074058 666490 229.16 666490 229.16 572.996856458345 27.53 0.57404 27.53 27.321 27.895 0 44 19 4 0.896624109332136 0.00492055376243532 0.0411309673856414 5.0562E-06 1 6133 140.24 122.11 1 18201000 15627 14895 15434 16293 12907 16961 11728 15870 17163 3392.5 14786 14079 15519 16655 13236 16964 12144 16064 16704 3561.7 1 1 1 1 1 1 1 1 1 1 1663 1033 1464 1541 1843 1843 1774 GHYEVTGSDDETGKLQGSGVSLASK 25 Phospho (STY) _GHYEVTGS(ph)DDETGKLQGSGVSLASK_ GHYEVT(0.001)GS(0.999)DDETGKLQGSGVSLASK GHY(-212.97)EVT(-31.48)GS(31.48)DDET(-93.87)GKLQGS(-226.34)GVS(-288.15)LAS(-316.99)K 0 0 1 1 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.421813964844 4 651.297169 2601.15957 34191.1965809994 2.1959 0.0014302 263890 171.87 263890 171.87 823.419931273497 64.139 1.5608 64.139 63.894 65.454 0 181 53 6 0.867354987950951 0.00541883963275817 0.025422080454026 2.8393E-54 1 15098 364.15 340.59 7 70051000 10767 10360 10787 9387.2 4850.9 11597 5255.6 8372.9 11418 79993 10188 9781.3 10789 9733.3 5284.8 11636 5499.1 10934 11005 75517 1 1 1 1 1 1 1 1 1 1 1664 896 1465 1542 1844 1844 1465 GHYTEGAELVDSVLDVVR 18 Unmodified _GHYTEGAELVDSVLDVVR_ 0 0 0 0 P07437;Q9BVA1;Q13885;P68371;Q13509 P07437 P07437 TUBB;TUBB2B;TUBB2A;TUBB4B;TUBB3 Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4B chain;Tubulin beta-3 chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 730.388549804688 3 653.66545 1957.97452 37352.7170095362 1.6533 0.0010807 116860 76.388 116860 76.389 730.387651697936 99.878 0.11238 99.878 99.807 99.92 0 11 3 4 1 0.00100943835785043 0.0350362385360977 3.0687E-05 1 23266 92.439 69.554 1 79151000 8491.9 10531 6731.6 9823.4 8511.6 9589.8 9517.6 9382.8 10982 36879 8028.9 9944.2 6903.3 10126 8548.1 9689.6 9679.9 10531 10774 34944 1 1 1 1 1 1 1 1 1 1 1665 320 1466 1543 1845 1845 GIAIAYEDEGSG 12 Phospho (STY) _GIAIAYEDEGS(ph)G_ GIAIAYEDEGS(1)G GIAIAY(-128.66)EDEGS(128.66)G 0 0 1 0 Q9BQC3 Q9BQC3 Q9BQC3 DPH2 Diphthamide biosynthesis protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.835693359375 2 631.25284 1260.49113 37132.1734499765 1.9705 0.0012439 181510 114.58 181520 114.58 745.834131277855 73.694 0.88875 73.694 73.414 74.302 0 65 30 4 0.863580620989934 0.00143698274237306 0.0542724199676577 3.1603E-07 1 17303 158.47 150.66 2 15568000 8598.3 11637 10085 10405 9277.3 10526 8580.2 8896.8 10064 17986 8141.7 10986 10058 10761 9453.9 10558 8808 9529.2 9866.8 17141 1 1 1 1 1 1 1 1 1 1 1666 1804 1467 1544 1846 1846 3310 GIASTSDPPTANIKPTPVVSTPSK 24 Phospho (STY) _GIASTSDPPTANIKPTPVVST(ph)PSK_ GIASTSDPPTANIKPTPVVS(0.025)T(0.975)PS(0.001)K GIAS(-182.9)T(-176.63)S(-176.63)DPPT(-126.29)ANIKPT(-72.87)PVVS(-15.97)T(15.97)PS(-31.62)K 0 0 1 1 P12270 P12270 P12270 TPR Nucleoprotein TPR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.186401367188 4 612.062273 2444.21999 36046.3314961665 1.8593 0.001138 280810 171.87 280810 171.87 784.185295232255 67.267 0.46774 67.267 67.062 67.53 0 56 15 5 0.876820547751253 0.00514986317994967 0.14122956602428 1.4601E-13 1 15792 212.28 196.15 8 21495000 17414 12371 18872 13111 8938.4 16744 9546.9 14343 14747 15040 16483 11691 18799 13476 9670.7 16620 9831.1 14933 14330 14494 1 1 1 1 1 1 1 1 1 1 1667 370 1468 1545 1847 1847 4390 GIITDSFGR 9 Phospho (STY) _GIITDS(ph)FGR_ GIIT(0.016)DS(0.984)FGR GIIT(-17.91)DS(17.91)FGR 0 0 1 0 Q9BSQ5 Q9BSQ5 Q9BSQ5 CCM2 Cerebral cavernous malformations 2 protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 637.821716308594 2 523.239339 1044.46413 NaN NaN NaN NaN NaN NaN NaN NaN 69.7 1 69.7 69.2 70.2 0 NaN NaN NaN 0.010855 1 16355 91.752 64.448 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1668 1818 1469 1546 1848 1848 3332 GIKSPIR 7 Phospho (STY) _GIKS(ph)PIR_ GIKS(1)PIR GIKS(49.3)PIR 0 0 1 1 Q8IX21 Q8IX21 Q8IX21 FAM178A Protein FAM178A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 436.932586669922 3 284.156394 849.447353 48603.3839802383 0.43406 0.00012334 537650 152.78 537650 152.78 436.931823864826 44.375 0.42623 44.375 44.143 44.569 0 26 14 2 0.982223707729779 0.000867750057799986 0.00965662365893238 0.031891 1 10187 49.3 6.9646 1 14994000 27419 15633 29219 14437 13610 30126 14015 19300 17617 777.13 25952 14761 29128 15148 14742 29363 14345 19803 17230 1178.4 1 1 1 1 1 1 1 1 1 1 1669 1423 1470 1547 1849 1849 2592 GILHLSPDVYQEMEASR 17 Phospho (STY) _GILHLS(ph)PDVYQEMEASR_ GILHLS(1)PDVYQEMEASR GILHLS(41.19)PDVY(-41.19)QEMEAS(-57.84)R 0 0 1 0 Q9NUL3 Q9NUL3 Q9NUL3 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.365356445313 3 675.64309 2023.90744 36290.5550956122 1.9028 0.0012856 113060 76.388 113060 76.389 752.699346693576 90.225 0.66221 90.225 89.956 90.618 0 48 22 3 0.660506067878751 0.00230137322853497 0.084906446004156 0.010444 1 21028 72.99 52.563 3 6763500 4437.5 4529.6 4587.7 4701.5 4790.9 4182 3969.7 5441.7 4809.6 27785 4199.5 4280 4611.8 4808.5 4839 4283.2 4103.2 6246.8 4710 26289 1 1 1 1 1 1 1 1 1 1 1670 2038 1471 1548 1850 1850 3700 GILRTPDTIR 10 Phospho (STY) _GILRT(ph)PDTIR_ GILRT(1)PDTIR GILRT(36.36)PDT(-36.36)IR 0 0 1 1 Q00610 Q00610 Q00610 CLTC Clathrin heavy chain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 484.271545410156 3 407.883222 1220.62784 44715.3028182041 0.43932 0.00017919 187280 76.388 187280 76.388 484.271090539633 55.467 0.67085 55.467 55.162 55.833 7.1054E-15 73 22 4 0.990623076337647 0.00131930924793199 0.0140791604544371 0.0003633 1 12902 119.21 100.43 2 50100000 7884.6 13330 8858.8 13579 6387.5 8454.1 7969 9444.2 14422 1557.5 7464.5 12594 8837 13845 6656.4 8718.1 8212.5 9481.8 13957 1685.2 1 1 1 1 1 1 1 1 1 1 1671 825 1472 1549 1851 1851 4504 GILSLPHQASPVSR 14 Phospho (STY) _GILSLPHQAS(ph)PVSR_ GILSLPHQAS(0.998)PVS(0.002)R GILS(-43.45)LPHQAS(27.07)PVS(-27.07)R 0 0 1 0 O75925 O75925 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 886.482543945313 2 771.395422 1540.77629 34815.4489557641 1.8619 0.0014363 148540 114.58 148540 114.58 885.97667123626 67.74 0.4468 67.74 67.559 68.005 0 36 14 4 0.686045137834752 0.000661077575189115 0.0312928984702999 0.0027841 1 15898 97.2 76.33 3 12316000 8137.7 9018.7 10107 9691.1 8445.3 8615.2 8627.5 10354 9629.3 18778 7707.7 8523.5 10044 9892.2 8671.9 8740.6 8800.8 10884 9458.7 17921 1 1 1 1 1 1 1 1 1 1 1672 206 1473 1550 1852 1852 358 GIPGLDVEDDEEGGGGAP 18 Unmodified _GIPGLDVEDDEEGGGGAP_ 0 0 0 0 Q9ULX6 Q9ULX6 Q9ULX6 AKAP8L A-kinase anchor protein 8-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 956.953979492188 2 842.370846 1682.72714 32287.640539535 1.8118 0.0015262 136020 114.58 136020 114.58 956.952831460927 82.394 0.82608 82.394 82.028 82.854 1.4211E-14 100 28 5 0.944461485678217 0.000865351434930906 0.0308891625000721 3.662E-07 1 19231 211.78 192.17 1 45231000 5435.1 4644.9 5867.4 4841.1 4903.9 4853.6 4877.8 6770.2 5031.9 28349 5144.6 4389 5871.5 4958.9 5033.2 4941.9 4970.6 7570.9 4958.4 26850 1 1 1 1 1 1 1 1 1 1 1673 2195 1474 1551 1853 1853 GIPHSLSGLQDPIIAR 16 Phospho (STY) _GIPHSLS(ph)GLQDPIIAR_ GIPHS(0.003)LS(0.997)GLQDPIIAR GIPHS(-25.7)LS(25.7)GLQDPIIAR 0 0 1 0 Q9ULH0 Q9ULH0 Q9ULH0 KIDINS220 Kinase D-interacting substrate of 220 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.027709960938 3 585.304738 1752.89238 38100.7080095319 1.5931 0.00093247 130510 76.388 130510 76.388 662.02639476673 85.389 0.54906 85.389 85.127 85.676 -1.4211E-14 51 18 4 0.899911726862642 0.00403761701126284 0.0220900267268475 2.8447E-07 1 19940 158.58 142.76 2 16054000 3901.2 5190 3660.9 6162.6 4581.6 4092.4 4882.4 4637.4 6122.1 10319 3690.6 4908.3 3712 6234.9 4600.5 4220.7 4989.4 4941.5 5988.1 9824 1 1 1 1 1 1 1 1 1 1 1674 2183 1475 1552 1854 1854 3947 GIPLATGDTSPEPELLPGAPLPPPK 25 Phospho (STY) _GIPLATGDTS(ph)PEPELLPGAPLPPPK_ GIPLAT(0.001)GDT(0.132)S(0.868)PEPELLPGAPLPPPK GIPLAT(-31.86)GDT(-8.19)S(8.19)PEPELLPGAPLPPPK 0 0 1 0 O75821 O75821 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 751.664001464844 4 636.830382 2543.29242 36130.9670411107 2.1459 0.0013666 179920 114.58 179930 114.58 751.662414667637 100.24 0.6426 100.24 100.11 100.76 0 98 22 7 0.994155642655479 0.0309349775919142 0.798987273115668 1.0186E-08 1 23389 173.01 159.56 3 436860000 27243 28865 28137 26055 19812 25205 20150 30353 31016 75271 25782 27252 28179 26911 20612 25509 20792 32515 30142 71579 1 1 1 1 1 1 1 1 1 1 1675 203 1476 1553 1855 1855 353 GIRDDIEEEDDQEAYFR 17 Unmodified _GIRDDIEEEDDQEAYFR_ 0 0 0 1 Q86XP3 Q86XP3 Q86XP3 DDX42 ATP-dependent RNA helicase DDX42 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.031555175781 3 700.643262 2098.90796 35712.9782348625 0.92811 0.00065028 109020 76.387 109030 76.388 777.030660378927 65.729 0.47467 65.729 65.544 66.019 0 34 15 3 0.870092578597486 0.000790988892491504 0.0158995988432865 7.062E-07 1 15446 151.23 128.57 1 8156600 9184.9 7687.1 9425.7 7527.6 7873.2 8182.1 8022.5 7612.9 8340.2 13845 8692.1 7260.9 9458.6 7749.3 8083.8 8191 8167.7 8075.5 8215.8 13213 1 1 1 1 1 1 1 1 1 1 1676 1398 1477 1554 1856 1856 GISPIVFDR 9 Phospho (STY) _GIS(ph)PIVFDR_ GIS(1)PIVFDR GIS(167.18)PIVFDR 0 0 1 0 Q96MU7 Q96MU7 Q96MU7 YTHDC1 YTH domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.847290039063 2 542.265357 1082.51616 38291.1953505654 1.9699 0.0010682 211300 114.58 211300 114.58 656.847002641848 82.637 1.1234 82.637 82.259 83.382 0 129 38 6 0.909477493661682 0.00260948816734098 0.0736820943562471 2.1161E-06 1 19286 167.18 125.49 1 261930000 13353 18048 13142 18683 17376 11241 18467 16211 18569 8446 12635 17053 13299 19025 17399 11677 18748 16323 18318 8328.1 1 1 1 1 1 1 1 1 1 1 1677 1716 1478 1555 1857 1857 3159 GISQTNLITTVTPEK 15 Phospho (STY) _GISQT(ph)NLITTVTPEK_ GIS(0.475)QT(0.525)NLITTVTPEK GIS(-0.43)QT(0.43)NLIT(-77.5)T(-113.51)VT(-143.14)PEK 0 0 1 0 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.395568847656 3 561.28512 1680.83353 37077.8041510946 1.8726 0.0010511 272190 152.77 272190 152.78 714.059295124656 84.741 0.68749 84.741 84.439 85.127 0 80 23 5 0.98423550061707 0.00758526145140112 0.255342162977613 1.5794E-10 1 19775 194.1 147.51 5 43546000 20786 5826.9 22670 5563.5 6194.5 22239 5663.8 12163 6692.7 10922 19676 5503 22516 5996.5 7252.4 21442 5818.9 12920 6560.1 10566 1 1 1 1 1 1 1 1 1 1 1678 2248 1479 1556 1858 1858 4151;4843;4844;4845 GISQTNLITTVTPEKK 16 Phospho (STY) _GISQTNLITTVT(ph)PEKK_ GISQTNLITT(0.006)VT(0.994)PEKK GIS(-124.34)QT(-108.73)NLIT(-35.09)T(-22.24)VT(22.24)PEKK 0 0 1 1 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.363830566406 4 453.2394 1808.92849 39592.3072281299 1.7269 0.0007827 379210 171.87 379210 171.87 625.362516309021 70.069 0.66449 70.069 69.669 70.333 1.4211E-14 95 22 5 0.909047995674484 0.00459596181488441 0.0266826664150716 2.2323E-08 1 16407 174.2 153.82 5 59475000 22516 4807.8 20501 3145.5 7102.4 21318 8997.9 10134 5165.3 4798.2 21298 4532.3 20599 3623.1 8021.8 20426 8963.1 10744 5259.2 4752.6 1 1 1 1 1 1 1 1 1 1 1679 2248 1480 1557 1859 1859 4151;4843;4844;4845 GISQTNLITTVTPEKK 16 Phospho (STY) _GISQTNLITT(ph)VTPEKK_ GISQTNLIT(0.027)T(0.618)VT(0.355)PEKK GIS(-69.36)QT(-47.75)NLIT(-13.62)T(2.4)VT(-2.4)PEKK 0 0 1 1 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.481567382813 3 603.983441 1808.92849 34820.1310237406 2.0343 0.0012287 379420 229.16 379420 229.16 833.480845875842 70.047 0.72573 70.047 69.607 70.333 0 102 24 5 0.991513383126556 0.00768328711210377 0.0511997711969257 1.9713E-05 1 16412 137.23 116.49 5 63044000 51846 9713.7 54180 10562 13488 50919 13139 27250 11494 20273 49068 9181 53923 11442 16083 48979 13346 28862 11410 19720 1 1 1 1 1 1 1 1 1 1 1680 2248 1480 1557 1860 1860 4151;4843;4844;4845 GISQTNLITTVTPEKK 16 Phospho (STY) _GIS(ph)QTNLITTVTPEKK_ GIS(0.811)QT(0.189)NLITTVTPEKK GIS(6.34)QT(-6.34)NLIT(-63.48)T(-90.43)VT(-119.43)PEKK 0 0 1 1 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.482238769531 3 603.983441 1808.92849 34765.5046660864 2.1443 0.0012951 379420 229.16 379420 229.16 833.480152209382 78.91 0.55773 78.91 78.636 79.193 0 62 18 4 0.947244665685598 0.00398335399864613 0.0478547734446354 1.4465E-10 1 18473 183.63 153.95 5 40223000 40645 6350.5 40332 6660.7 6952.6 41210 6843.7 20189 7841.5 18458 38459 6000.8 40221 7375.2 9025.8 39536 6998.8 21622 7694.9 17848 1 1 1 1 1 1 1 1 1 1 1681 2248 1480 1557 1861 1861 4151;4843;4844;4845 GISQTNLITTVTPEKK 16 Phospho (STY) _GIS(ph)QTNLITTVTPEKK_ GIS(0.704)QT(0.296)NLITTVTPEKK GIS(3.77)QT(-3.77)NLIT(-85.55)T(-90)VT(-101.74)PEKK 0 0 1 1 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.363525390625 4 453.2394 1808.92849 40012.9389497979 1.8068 0.00081891 379210 171.87 379210 171.87 625.111617574673 78.912 0.50023 78.912 78.664 79.164 0 50 16 4 0.976932648359668 0.00187570938582183 0.0293395882154486 1.0451E-05 1 18480 135.91 124.97 5 21467000 16523 2431.5 20306 2382.8 4121.5 17978 3171.8 8447.4 3527.5 3688.8 15649 2296.7 20029 2700.1 5125 17212 3283.9 8953.9 3465.5 3669 1 1 1 1 1 1 1 1 1 1 1682 2248 1480 1557 1862 1862 4151;4843;4844;4845 GISQTNLITTVTPEKK 16 2 Phospho (STY) _GIS(ph)QTNLITTVT(ph)PEKK_ GIS(0.972)QT(0.028)NLIT(0.005)T(0.09)VT(0.905)PEKK GIS(15.55)QT(-15.55)NLIT(-23.07)T(-10.05)VT(10.05)PEKK 0 0 2 1 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.13671875 3 630.638885 1888.89483 34661.4142617576 1.9502 0.0012298 363380 229.16 363380 229.16 860.135117786198 76.605 0.9935 76.605 76.035 77.028 0 63 33 3 0.827537641699787 0.00506520921897832 0.120670161078881 6.5987E-07 1 17950 142.41 121.79 10 20697000 31544 6118.1 31852 6773.8 6841.1 33780 6239.6 16870 6362.8 17529 29850 5783.3 31748 7349 8410.7 32475 6383.6 18106 6273 16896 1 1 1 1 1 1 1 1 1 1 1683 2248 1480 1558 1863 1863 4151;4843;4844;4845 GITNTLEESSSLKR 14 Phospho (STY) _GITNTLEESS(ph)SLKR_ GITNTLEES(0.056)S(0.472)S(0.472)LKR GIT(-49.41)NT(-45.43)LEES(-9.29)S(0)S(0)LKR 0 0 1 1 P28715 P28715 P28715 ERCC5 DNA repair protein complementing XP-G cells MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.039916992188 3 538.929337 1613.76618 38768.02292095 1.621 0.00087361 283480 152.78 283480 152.78 691.704850958163 61.539 0.55922 61.539 61.274 61.833 0 59 18 4 0.798335554084787 0.00363221381677404 0.0514267970345251 0.012387 1 14431 71.842 55.66 5 26495000 19229 16325 21855 14189 19562 23145 24352 19400 13951 9523.9 18206 15410 21837 14843 20045 22770 24274 19891 14207 9416.9 1 1 1 1 1 1 1 1 1 1 1684 495 1481 1559 1864 1864 822;823 GKASPFEEDQNR 12 Phospho (STY) _GKAS(ph)PFEEDQNR_ GKAS(1)PFEEDQNR GKAS(176.25)PFEEDQNR 0 0 1 1 Q8TB72 Q8TB72 Q8TB72 PUM2 Pumilio homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 958.470703125 2 729.30647 1456.59839 31819.1045952636 2.1196 0.0015458 314220 229.16 314220 229.16 958.970547809155 42.197 0.45954 42.197 41.965 42.425 0 33 15 3 0.586649906062755 0.000657517417905809 0.025669997193752 1.1982E-10 1 9647 176.25 164.2 1 13220000 17336 12120 15950 11986 14241 15844 14066 12984 13322 4842.5 16399 11449 16119 12377 14550 15682 14306 13280 13176 4860.3 1 1 1 1 1 1 1 1 1 1 1685 1537 1482 1560 1865 1865 2823 GKDQERSR 8 Phospho (STY) _GKDQERS(ph)R_ GKDQERS(1)R GKDQERS(48.74)R 0 0 1 2 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.266906738281 3 352.492505 1054.45569 44073.6283322183 1.5729 0.00055443 433410 152.77 433410 152.78 505.267063505797 21.051 0.5475 21.051 20.88 21.428 0 47 18 4 0.92538642803623 0.00702259955803281 0.0888633214965798 0.051825 1 4751 48.741 18.41 1 5009000 1811.1 2399.1 2181.6 2790.6 2743.9 1402.5 2446.7 2668.8 2643.5 4730.8 1715.1 2268.6 2181.8 2819.1 2747.3 1492.5 2510.2 2770.4 2600 4516.4 1 1 1 1 1 1 1 1 1 1 1686 952 1483 1561 1866 1866 1588 GKDSLSDDGVDLK 13 Phospho (STY) _GKDS(ph)LSDDGVDLK_ GKDS(0.796)LS(0.204)DDGVDLK GKDS(5.9)LS(-5.9)DDGVDLK 0 0 1 1 P07948 P07948 P07948 LYN Tyrosine-protein kinase Lyn MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.046630859375 3 476.879983 1427.61812 36434.3634791896 2.1446 0.0010227 480550 229.16 480550 229.17 706.045521271248 64.836 0.83698 64.836 64.477 65.314 0 70 28 4 0.779150872341164 0.00232264643054367 0.0272321924040109 0.0046022 2 15233 88.264 49.687 2 17609000 29787 22271 32319 21518 28326 32175 27418 27621 26006 13803 28195 21035 32348 22311 28967 31744 27914 28298 25720 13636 2 2 2 2 2 2 2 2 2 2 1687 325 1484 1562 1867;1868 1867 532 GKEGPGTPTR 10 Phospho (STY) _GKEGPGT(ph)PTR_ GKEGPGT(0.996)PT(0.004)R GKEGPGT(23.62)PT(-23.62)R 0 0 1 1 Q05516 Q05516 Q05516 ZBTB16 Zinc finger and BTB domain-containing protein 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.277221679688 3 360.500889 1078.48084 42911.0035373194 1.1319 0.00040804 423790 152.78 423790 152.78 513.276280145863 27.567 0.42673 27.567 27.38 27.807 0 29 14 3 0.948733802079945 0.00255941214755344 0.027642780274035 0.012077 1 6143 86.803 56.074 2 10184000 6232.6 5393.5 5521.6 5719.8 23674 7508.7 25947 13671 5095.9 2186.7 5895 5096.9 5827.3 5881.7 22965 7527.9 25732 13541 5912.5 2375.4 1 1 1 1 1 1 1 1 1 1 1688 869 1485 1563 1869 1869 4515 GKGGVTGSPEASISGSK 17 Phospho (STY) _GKGGVTGS(ph)PEASISGSK_ GKGGVT(0.033)GS(0.966)PEASISGSK GKGGVT(-14.64)GS(14.64)PEAS(-34.9)IS(-56.78)GS(-80.44)K 0 0 1 1 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.084289550781 3 533.58557 1597.73488 35639.7422409602 1.9527 0.0010419 429480 229.16 429480 229.16 762.748483250552 50.027 0.84315 50.027 49.718 50.562 0 43 28 2 0.760752166547798 0.00583249653107027 0.126746311023727 9.7391E-11 1 11580 183.1 155.25 5 134080000 43447 34189 46381 33471 8510.1 43354 7504 31166 36800 11264 41123 32293 46069 34569 10886 42883 8489 32074 35068 11328 1 1 1 1 1 1 1 1 1 1 1689 896 1486 1564 1870 1870 1464 GKGSPRPQAPK 11 Phospho (STY) _GKGS(ph)PRPQAPK_ GKGS(1)PRPQAPK GKGS(92.65)PRPQAPK 0 0 1 2 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 473.529754638672 4 301.406494 1201.59687 45225.1752903112 0.95382 0.00028749 570230 171.87 570230 171.87 473.278948639354 31.317 2.2114 31.317 30.728 32.939 0 236 74 6 0.96671198796197 0.033081941214079 0.64951022803381 0.0029322 1 6967 92.65 71.697 1 538630000 129770 108250 123970 107350 92998 117630 106320 116090 114620 5163.3 122780 102260 124810 110440 96400 117440 107810 116670 112750 7548.7 1 1 1 1 1 1 1 1 1 1 1690 1035 1487 1565 1871 1871 1780 GKIEVLDSPASK 12 Phospho (STY) _GKIEVLDS(ph)PASK_ GKIEVLDS(0.999)PAS(0.001)K GKIEVLDS(31.26)PAS(-31.26)K 0 0 1 1 Q8N5I9 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.053894042969 3 441.890042 1322.6483 39075.7889043211 2.3336 0.0010312 518600 229.16 518600 229.16 671.052839801572 64.826 0.77933 64.826 64.564 65.343 0 64 26 3 0.975285488656638 0.00124415569985053 0.0194853566836977 0.018728 1 15218 59.372 36.455 2 12976000 13857 9355.7 13507 10855 7312.1 13831 7948.2 10108 11182 8131.5 13111 8846.5 13547 11102 7798.2 13700 8148.6 10528 10896 7890.7 1 1 1 1 1 1 1 1 1 1 1691 1474 1488 1566 1872 1872 2722 GKLSAEENPDDSEVPSSSGINSTK 24 Phospho (STY) _GKLS(ph)AEENPDDSEVPSSSGINSTK_ GKLS(1)AEENPDDSEVPSSSGINSTK GKLS(39.45)AEENPDDS(-39.45)EVPS(-112.2)S(-119.14)S(-126.57)GINS(-160.16)T(-165.25)K 0 0 1 1 Q9Y5Q9 Q9Y5Q9 Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 804.907592773438 4 632.781352 2527.0963 34593.1317202739 1.8906 0.0011963 271620 171.87 271620 171.87 804.905547535819 57.633 0.39803 57.633 57.422 57.82 -7.1054E-15 38 13 4 0.835666211040471 0.00197513531715189 0.0486010874813838 6.1702E-12 1 13497 179.49 161.08 7 14718000 10922 9148.7 11249 7631.5 9309.5 11014 8620.2 11517 11360 9561.8 10336 8633.8 11284 7982.7 9554.7 10913 8882.8 11821 11093 9270.1 1 1 1 1 1 1 1 1 1 1 1692 2298 1489 1567 1873 1873 4238 GKSEEELEASK 11 Phospho (STY) _GKS(ph)EEELEASK_ GKS(1)EEELEASK GKS(74.61)EEELEAS(-74.61)K 0 0 1 1 Q7RTP6 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.685241699219 3 429.521907 1285.54389 39190.7214721112 1.7649 0.00075807 533530 229.16 533530 229.16 658.68473768252 48.019 0.47334 48.019 47.744 48.217 0 42 15 4 0.791914030102878 0.00172294947560144 0.0124881366353032 8.2743E-07 1 11117 138.98 113.77 2 27968000 22181 16736 20284 17055 17450 20098 18652 18723 16921 9595 20982 15812 20502 17541 17891 20011 18881 19123 16769 9468.2 1 1 1 1 1 1 1 1 1 1 1693 1324 1490 1568 1874 1874 2370 GKTPEEIRK 9 Phospho (STY) _GKT(ph)PEEIRK_ GKT(1)PEEIRK GKT(60.16)PEEIRK 0 0 1 2 P63208 P63208 P63208 SKP1 S-phase kinase-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.02392578125 3 379.860306 1136.55909 39506.614566708 1.417 0.00053825 603280 229.16 603280 229.16 609.023650984539 40.4 0.56491 40.4 40.12 40.685 0 51 16 4 0.973241964831985 0.00371793086700147 0.0466883209016755 0.050597 1 9174 60.157 38.526 1 78227000 28195 51171 29503 50345 40461 32619 40171 40610 52343 7093.9 26685 48334 29766 51458 40420 33600 41238 40639 51130 7619.6 1 1 1 1 1 1 1 1 1 1 1694 780 1491 1569 1875 1875 4498 GLAGPPASPGK 11 Phospho (STY) _GLAGPPAS(ph)PGK_ GLAGPPAS(1)PGK GLAGPPAS(74.99)PGK 0 0 1 0 Q9P206 Q9P206 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 497.611938476563 3 344.50223 1030.48486 43897.8450512166 0.85112 0.00029321 443460 152.77 443470 152.77 497.277213608344 51.034 0.55074 51.034 50.761 51.312 0 50 18 3 0.955952448672526 0.00185598300503046 0.0119302312779351 0.0084751 1 11845 74.987 50.644 1 20445000 6192.7 17917 7098.7 17570 9901.6 7570.1 6536.5 10107 17428 1212.2 5863.3 16923 7123.9 17901 9845.4 8068.3 7113.5 10077 16734 1375.3 1 1 1 1 1 1 1 1 1 1 1695 2097 1492 1570 1876 1876 3791 GLAITFVSDENDAK 14 Unmodified _GLAITFVSDENDAK_ 0 0 0 0 O00148;Q13838 O00148;Q13838 O00148 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.026794433594 3 493.915706 1478.72529 39282.5519715444 1.8336 0.00090563 309310 152.78 309320 152.78 647.025219427267 84.723 0.74519 84.723 84.439 85.185 0 63 25 5 0.983926528254718 0.00629282466893309 0.198963743995713 5.9225E-07 1 19776 153.75 137.86 1 18189000 9530.5 8061.6 10076 8773.3 8904.9 10156 10543 9013.2 8846.4 7077.5 9020.3 7619.5 10103 8986.9 9127.4 10117 10607 9298.5 8800.7 6872.9 1 1 1 1 1 1 1 1 1 1 1696 31;980 1493 1571 1877 1877 GLDEDETNFLDEVSR 15 Unmodified _GLDEDETNFLDEVSR_ 0 0 0 0 Q9GZU8 Q9GZU8 Q9GZU8 FAM192A Protein FAM192A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 984.478576660156 2 869.891945 1737.76934 30288.840158825 1.3011 0.0011318 131720 114.58 131720 114.58 984.473825121748 86.65 0.34245 86.65 86.476 86.818 0 24 11 3 0.981923329026175 0.000916946887001833 0.0308249603673012 6.122E-10 1 20223 222.81 198.29 1 10470000 7902.2 9922.5 8403.2 9491.2 9509.5 8307.1 9355.9 9473.8 9450.2 30364 7479.4 9371 8446 9752.6 9582.9 8451.3 9533.5 10373 9320.5 28811 1 1 1 1 1 1 1 1 1 1 1697 1893 1494 1572 1878 1878 GLDVEDVK 8 Unmodified _GLDVEDVK_ 0 0 0 0 Q92841;P17844 Q92841;P17844 Q92841 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.892944335938 2 437.729458 873.444362 39228.9245536889 3.1891 0.001396 523530 229.16 523530 229.16 666.891994227913 63.016 0.46572 63.016 62.79 63.255 0 37 15 3 0.610392052610728 0.00225232278184784 0.0654189758873031 0.0049065 1 14815 102.51 61.527 1 18135000 26714 28675 26840 30650 27034 26218 25877 27176 30256 20091 25279 27099 27019 31279 27411 26527 26516 27828 29668 19547 1 1 1 1 1 1 1 1 1 1 1698 1626;421 1495 1573 1879 1879 GLGACTLLGSPR 12 Phospho (STY) _GLGACTLLGS(ph)PR_ GLGACTLLGS(1)PR GLGACT(-57.04)LLGS(57.04)PR 0 0 1 0 O95644 O95644 O95644 NFATC1 Nuclear factor of activated T-cells, cytoplasmic 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.887023925781 2 641.304687 1280.59482 36006.9786882276 1.964 0.0012595 178670 114.58 178670 114.58 755.885953430274 74.584 0.69943 74.584 74.273 74.973 0 59 23 4 0.925849159187246 0.0014228366178216 0.04305649339724 5.0932E-07 1 17484 147.73 91.689 2 18322000 11380 13075 12116 13360 7727.9 12220 7171.9 12069 14939 15845 10772 12353 12103 13682 8100.8 12327 7539.8 12590 14411 15200 1 1 1 1 1 1 1 1 1 1 1699 255 1496 1574 1880 1880 427 GLGLGANLTEAQALTPTGPSR 21 Phospho (STY) _GLGLGANLTEAQALT(ph)PTGPSR_ GLGLGANLTEAQALT(0.964)PT(0.033)GPS(0.002)R GLGLGANLT(-108.45)EAQALT(14.6)PT(-14.6)GPS(-26.3)R 0 0 1 0 Q92917 Q92917 Q92917 GPKOW G patch domain and KOW motifs-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.743713378906 3 702.019326 2103.03615 35258.7678035332 1.1703 0.00082154 108810 76.388 108810 76.389 778.407632394725 81.112 0.43799 81.112 80.84 81.278 0 40 14 4 0.884942435311871 0.00197521711841307 0.0360747940169244 9.287E-12 1 18972 205.8 179.68 4 15486000 4903.6 4590.9 4646.4 4633.9 3991.4 4101.6 2941.4 4613.1 4583.1 17726 4639.1 4337.1 4683.4 4746.8 4075.9 4174.8 3089.4 5141.6 4452.5 16798 1 1 1 1 1 1 1 1 1 1 1700 1630 1497 1575 1881 1881 4719 GLGPPSPPAPPR 12 Phospho (STY) _GLGPPS(ph)PPAPPR_ GLGPPS(1)PPAPPR GLGPPS(112.02)PPAPPR 0 0 1 0 Q13425 Q13425 Q13425 SNTB2 Beta-2-syntrophin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.386901855469 2 611.802638 1221.59072 36719.8507600333 1.5788 0.00096591 187290 114.58 187290 114.58 726.384174271972 58.011 1.3013 58.011 57.22 58.521 -7.1054E-15 112 44 3 0.976144210006108 0.00108739402619445 0.0523497371812865 0.00018182 1 13503 112.02 79.553 1 29137000 16248 16219 15620 16969 16591 15484 15943 16284 17212 13879 15372 15326 15775 17354 16771 15623 16294 16721 16929 13446 1 1 1 1 1 1 1 1 1 1 1701 951 1498 1576 1882 1882 1581 GLGSSPDLELLLR 13 Phospho (STY) _GLGS(ph)SPDLELLLR_ GLGS(0.881)S(0.119)PDLELLLR GLGS(8.69)S(-8.69)PDLELLLR 0 0 1 0 Q9NQQ7 Q9NQQ7 Q9NQQ7 SLC35C2 Solute carrier family 35 member C2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.953308105469 2 725.371082 1448.72761 34508.5995760331 1.4525 0.0010536 157960 114.58 157960 114.58 839.952353965238 101 0.26127 101 100.93 101.19 0 28 8 5 0.990227241769397 0.0159801411727313 0.975711884541152 5.1538E-31 1 23685 292.39 255.14 2 157050000 93782 79457 92994 78682 82423 93604 83648 90092 84991 36233 88739 75056 93557 81075 84286 93182 85124 91597 83804 36203 1 1 1 1 1 1 1 1 1 1 1702 2007 1499 1577 1883 1883 3643 GLGTDEDSLIEIICSR 16 Unmodified _GLGTDEDSLIEIICSR_ 0 0 0 0 P07355;A6NMY6 P07355 P07355 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.681640625 3 593.292736 1776.85638 39602.2344464037 1.8878 0.00112 128750 76.387 128750 76.389 669.680295396501 100.07 0.11147 100.07 100 100.11 0 5 3 2 0.958027575395834 0.000533701070024531 0.024559097091823 0.012867 1 23347 70.167 37.561 1 62903000 3394 5761.3 4694.8 6832 5243.1 4326.2 5136.9 6745.5 6703.7 19460 3216.4 5448.6 4659.2 6909.3 5288.3 4515.2 5276.9 7258.8 6548.1 18480 1 1 1 1 1 1 1 1 1 1 1703 318 1500 1578 1884 1884 GLIVYCVTSPK 11 Phospho (STY) _GLIVYCVTS(ph)PK_ GLIVYCVT(0.368)S(0.632)PK GLIVY(-70.47)CVT(-2.36)S(2.36)PK 0 0 1 0 Q8TEU7 Q8TEU7 Q8TEU7 RAPGEF6 Rap guanine nucleotide exchange factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.982482910156 2 658.819639 1315.62473 35339.2676725732 2.0973 0.0013817 347840 229.16 347840 229.16 887.982955421183 83.824 0.40144 83.824 83.643 84.044 0 31 13 3 0.686067602337096 0.000791308954587773 0.0227029165358759 9.7187E-05 1 19598 126.48 90.968 3 8182900 15954 13230 15017 10202 7352.7 15478 8148.2 13618 13180 15687 15093 12480 15083 10745 7930.1 15285 8393.7 14205 12791 15086 1 1 1 1 1 1 1 1 1 1 1704 1555 1501 1579 1885 1885 2855 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 Phospho (STY) _GLLAQGLRPES(ph)PPPAGPLLNGAPAGESPQPK_ GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK GLLAQGLRPES(117.73)PPPAGPLLNGAPAGES(-117.73)PQPK 0 0 1 1 Q96TA1 Q96TA1 Q96TA1 FAM129B Niban-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 711.988830566406 5 620.123376 3095.5805 36546.6928605156 1.5305 0.00094909 147810 91.663 147820 91.664 712.18793728447 86.668 1.3131 86.668 86.187 87.5 0 171 44 6 0.906189812174521 0.006280939374278 0.121341739403924 6.9282E-08 2 20197 162.92 145.77 2 52663000 12828 14883 15875 13672 28549 16355 32959 22193 15319 12236 12150 14052 15974 14155 28269 16370 32855 22404 15864 12035 2 2 2 2 2 2 2 2 2 2 1705 1759 1502 1580 1886;1887 1887 3246 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 Phospho (STY) _GLLAQGLRPES(ph)PPPAGPLLNGAPAGESPQPK_ GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK GLLAQGLRPES(117.27)PPPAGPLLNGAPAGES(-117.27)PQPK 0 0 1 1 Q96TA1 Q96TA1 Q96TA1 FAM129B Niban-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 593.660034179688 6 516.93736 3095.5805 40415.9656797323 1.1517 0.00059534 147770 76.386 147770 76.387 593.657841341112 86.692 0.72112 86.692 86.307 87.028 0 97 24 6 0.938664700134381 0.00204728498663405 0.0250038537191791 2.933E-08 1 20186 170.48 158.4 2 15126000 3712.4 2977.9 3539.9 3362.8 6947 4511.2 7419.4 4879.4 3436.1 1891.7 3512.2 2815.3 3617 3447.8 6851.6 4478.7 7420.5 4937.1 3559.3 1894.2 1 1 1 1 1 1 1 1 1 1 1706 1759 1502 1580 1888 1888 3246 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 Phospho (STY) _GLLAQGLRPES(ph)PPPAGPLLNGAPAGESPQPK_ GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK GLLAQGLRPES(101.31)PPPAGPLLNGAPAGES(-101.31)PQPK 0 0 1 1 Q96TA1 Q96TA1 Q96TA1 FAM129B Niban-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1185.97985839844 3 1032.86744 3095.5805 28890.1507020504 1.4224 0.0014691 147910 152.77 147910 152.78 1185.97637040336 86.698 0.40115 86.698 86.447 86.848 0 36 13 4 0.946169969905422 0.000453050735054682 0.0176252902030257 7.2871E-12 1 20241 180.69 161.44 2 12497000 2723.2 2326.8 2571.1 2215.9 0 2658.3 4814.9 3955.5 3502.9 21115 2576.2 2197.4 2575.3 2289.1 0 2700.8 4634 4553.7 3512 19974 1 1 1 1 0 1 1 1 1 1 1707 1759 1502 1580 1889 1889 3246 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 Phospho (STY) _GLLAQGLRPES(ph)PPPAGPLLNGAPAGESPQPK_ GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK GLLAQGLRPES(80.22)PPPAGPLLNGAPAGES(-80.22)PQPK 0 0 1 1 Q96TA1 Q96TA1 Q96TA1 FAM129B Niban-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.231872558594 4 774.902401 3095.5805 32624.0042441001 1.4732 0.0011416 147860 114.58 147860 114.58 889.983140687016 86.641 1.1007 86.641 86.248 87.349 0 177 37 7 0.925292372923969 0.00112341186455717 0.0118298517798943 4.9543E-05 1 20349 120.31 101.91 2 121370000 3728.9 4711.9 3713.5 3552.2 6057.1 3368.2 6581.5 5121.8 4186 12855 3528.4 4444.6 3769.8 3715.1 6013.5 3430.5 6608.6 5457 4231.9 12223 1 1 1 1 1 1 1 1 1 1 1708 1759 1502 1580 1890 1890 3246 GLLPGGTQVLDGTSGFSPAPK 21 Phospho (STY) _GLLPGGTQVLDGTSGFS(ph)PAPK_ GLLPGGTQVLDGTS(0.037)GFS(0.963)PAPK GLLPGGT(-156.05)QVLDGT(-36.62)S(-14.19)GFS(14.19)PAPK 0 0 1 0 Q96S94 Q96S94 Q96S94 CCNL2 Cyclin-L2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.78662109375 3 693.676789 2078.00854 34099.960234558 2.1198 0.0014705 220240 152.78 220240 152.78 846.786087129908 94.327 0.6834 94.327 94.026 94.71 -1.4211E-14 90 23 5 0.991059463610105 0.00774112404349537 0.127750233192729 1.0623E-16 1 21920 235.23 219.46 4 59899000 7732.8 8540 8565.7 7714.7 5417.8 7919.1 5263.2 8978.5 8540.2 19224 7320.3 8062.8 8538.5 7974.9 5684.7 7978 5454.7 9544.3 8287.6 18310 1 1 1 1 1 1 1 1 1 1 1709 1746 1503 1581 1891 1891 3204 GLLYDSDEEDEERPAR 16 Phospho (STY) _GLLYDS(ph)DEEDEERPAR_ GLLYDS(1)DEEDEERPAR GLLY(-88.41)DS(88.41)DEEDEERPAR 0 0 1 1 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.997619628906 3 658.608991 1972.80514 37273.006097102 1.6557 0.0010904 115980 76.388 115990 76.389 735.331146886554 56.929 1.3293 56.929 56.634 57.963 0 129 45 4 0.784752138036896 0.00143155452864002 0.0282828347045826 8.3498E-11 1 13273 193.27 162.68 2 25849000 12470 12231 10895 11607 11175 12387 13505 12831 13088 16077 11794 11550 11069 11969 11357 12417 13624 13338 12932 15435 1 1 1 1 1 1 1 1 1 1 1710 647 1504 1582 1892 1892 1070 GLLYDSDEEDEERPAR 16 Phospho (STY) _GLLYDS(ph)DEEDEERPAR_ GLLY(0.002)DS(0.998)DEEDEERPAR GLLY(-26.62)DS(26.62)DEEDEERPAR 0 0 1 1 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.99755859375 3 658.608991 1972.80514 NaN NaN NaN NaN NaN NaN NaN NaN 58.44 1 58.44 57.94 58.94 0 NaN NaN NaN 0.013031 1 13689 86.258 71.168 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1711 647 1504 1582 1893 1893 1070 GLNPDGTPALSTLGGFSPASKPSSPR 26 Phospho (STY) _GLNPDGTPALSTLGGFS(ph)PASKPSSPR_ GLNPDGTPALSTLGGFS(0.367)PAS(0.118)KPS(0.348)S(0.167)PR GLNPDGT(-114)PALS(-53.88)T(-40.24)LGGFS(0.23)PAS(-4.91)KPS(-0.23)S(-3.41)PR 0 0 1 1 Q9UK58 Q9UK58 Q9UK58 CCNL1 Cyclin-L1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.152221679688 4 648.567988 2590.24285 35940.6043646216 1.4581 0.00094567 176670 114.58 176670 114.58 763.651082180567 85.877 0.48188 85.877 85.59 86.072 0 46 16 4 0.73076215801055 0.00218564043977165 0.0410492343110256 1.0346E-07 1 20029 157.73 142.88 7 13347000 3917.1 5778.2 5078.3 5819.8 6067.5 4462.1 6076.7 6762 5557.8 9305.7 3711 5458.7 5058.9 5951.2 6098.6 4579.5 6170.9 6974.1 5505.9 8918.9 1 1 1 1 1 1 1 1 1 1 1712 2166 1505 1583 1894 1894 3899;3900 GLNPDGTPALSTLGGFSPASKPSSPR 26 2 Phospho (STY) _GLNPDGTPALSTLGGFS(ph)PASKPS(ph)SPR_ GLNPDGTPALSTLGGFS(0.949)PAS(0.378)KPS(0.445)S(0.228)PR GLNPDGT(-113.12)PALS(-56.22)T(-38.09)LGGFS(10.88)PAS(-0.99)KPS(0.99)S(-2.9)PR 0 0 2 1 Q9UK58 Q9UK58 Q9UK58 CCNL1 Cyclin-L1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.142150878906 4 668.559571 2670.20918 35406.6385049464 1.5785 0.0010553 171390 114.58 171390 114.58 783.391541028975 87.096 0.85524 87.096 86.76 87.616 -1.4211E-14 111 28 5 0.955808535371417 0.0017415560872388 0.0205562648965694 6.9577E-12 1 20289 187.76 165.64 21 32651000 4008.1 5480.6 3878.8 5325.2 3665.2 3986.7 4912.5 4519 6094.1 13478 3792.2 5176.4 3912.9 5455.7 3750.8 4087.9 4973 4918.4 5962.9 12796 1 1 1 1 1 1 1 1 1 1 1713 2166 1505 1584 1895 1895 3899;3900 GLNSSFETSPK 11 Phospho (STY) _GLNSSFET(ph)SPK_ GLNS(0.001)S(0.002)FET(0.724)S(0.273)PK GLNS(-31.04)S(-24.67)FET(4.24)S(-4.24)PK 0 0 1 0 Q8IV63 Q8IV63 Q8IV63 VRK3 Inactive serine/threonine-protein kinase VRK3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 569.291748046875 3 416.183226 1245.52785 42831.1901366495 1.7474 0.00072725 367080 152.77 367090 152.78 568.95866146855 61.456 0.55357 61.456 61.218 61.771 -7.1054E-15 60 18 4 0.984646967744094 0.00402114780532851 0.0802489165111603 0.023005 1 14411 62.035 44.599 4 25021000 10990 11630 13584 14520 7774.2 12181 7761.3 11354 13120 2805 10409 11003 13458 14695 8237.1 12309 8047.7 11506 12718 2904.1 1 1 1 1 1 1 1 1 1 1 1714 1410 1506 1585 1896 1896 4651 GLPPSMER 8 Oxidation (M),Phospho (STY) _GLPPS(ph)M(ox)ER_ GLPPSM(1)ER GLPPS(1)MER GLPPSM(95.77)ER GLPPS(95.77)MER 0 1 1 0 P38159 P38159 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.28955078125 2 491.706818 981.399082 39564.9072028711 1.0595 0.00052095 233030 114.58 233030 114.58 606.288515114201 35.976 3.4139 35.976 33.962 37.376 0 304 119 4 0.961716928721132 0.00364793529946223 0.118421549668066 0.0040298 4 8195 95.775 78.678 1 50005000 54493 74691 57395 76722 66714 50519 67910 69339 74260 10779 51576 70570 57743 78231 67175 52063 69243 69147 73003 11755 4 4 4 4 4 4 4 4 4 4 1715 561 1507 1586 1897;1898;1899;1900 1899 74 909 GLPPSMER 8 Phospho (STY) _GLPPS(ph)MER_ GLPPS(1)MER GLPPS(132.88)MER 0 0 1 0 P38159 P38159 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.291748046875 2 483.70936 965.404168 39755.4212428119 1.1997 0.0005803 236880 114.58 236880 114.58 598.290822982676 48.99 8.4883 48.99 47.344 55.833 0 782 296 4 0.950729918009518 0.0219695081429837 0.687795981865696 0.00027413 8 11450 132.88 83.457 1 300040000 486400 721980 465160 714120 619420 495750 640670 620120 764410 27254 460180 681980 471540 730210 619900 508270 654520 618030 749000 40015 8 8 8 8 8 8 8 8 8 8 1716 561 1507 1587 1901;1902;1903;1904;1905;1906;1907;1908 1903 909 GLPTGDSPLGPMTHR 15 Phospho (STY) _GLPTGDS(ph)PLGPMTHR_ GLPTGDS(1)PLGPMTHR GLPT(-34.27)GDS(34.27)PLGPMT(-53.76)HR 0 0 1 0 Q9NVS9 Q9NVS9 Q9NVS9 PNPO Pyridoxine-5-phosphate oxidase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.635803222656 3 539.248124 1614.72254 40210.3688617235 1.4445 0.00077893 141660 76.388 141660 76.389 615.635675714811 66.153 0.653 66.153 65.807 66.46 0 47 21 3 0.562402629724761 0.000836837956149661 0.0286262422033999 0.0014817 1 15550 97.713 81.574 3 6588200 5935.2 7447.9 5783.2 6904.9 7923.9 6878.7 6918.5 6175.4 8145.6 3674.7 5615.6 7032.7 5856.4 7122.5 7901.7 6894.1 7124.4 6332.3 7985.2 3603.1 1 1 1 1 1 1 1 1 1 1 1717 2048 1508 1588 1909 1909 3709 GLRYSLPTPK 10 Phospho (STY) _GLRYS(ph)LPTPK_ GLRY(0.144)S(0.845)LPT(0.011)PK GLRY(-7.69)S(7.69)LPT(-18.89)PK 0 0 1 1 Q9ULX3 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.654418945313 3 404.544318 1210.61112 42285.0689949543 1.4509 0.00058694 377650 152.78 377650 152.78 557.319851173052 69.956 0.60776 69.956 69.607 70.215 0 50 20 3 0.978539676027463 0.00159636505951774 0.0144997571412077 0.032539 1 16419 47.844 21.46 3 9989100 6216.5 7298.6 7430.1 6277.4 4843.2 8064.4 5176.4 7449.2 7254.8 2357.7 5886.9 6888.9 7380.9 6536.5 5074.3 8000.4 5310 7567 7070.1 2392.4 1 1 1 1 1 1 1 1 1 1 1718 2194 1509 1589 1910 1910 3975 GLSASLPDLDSENWIEVK 18 Phospho (STY) _GLSAS(ph)LPDLDSENWIEVK_ GLS(0.002)AS(0.998)LPDLDSENWIEVK GLS(-28.05)AS(28.05)LPDLDS(-68.43)ENWIEVK 0 0 1 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1256.13549804688 2 1026.97991 2051.94527 27885.4855824716 1.7442 0.0017912 223140 229.16 223140 229.17 1256.14073700274 100.8 0.17058 100.8 100.73 100.9 -1.4211E-14 10 5 3 0.614974329355039 0.000952178397987036 0.0275008615146129 2.0292E-23 1 23621 284.72 249.1 3 32434000 11189 12885 11761 10364 9274 12820 9689.6 13680 11035 143850 10589 12158 11780 10834 9565.3 13022 9880.1 18024 10831 135770 1 1 1 1 1 1 1 1 1 1 1719 1273 1510 1590 1911 1911 2258 GLSEDTTEETLK 12 Unmodified _GLSEDTTEETLK_ 0 0 0 0 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 891.485107421875 2 661.819729 1321.62491 33106.0852112286 1.3703 0.00090689 346260 229.16 346260 229.16 891.483564600401 57.89 0.29243 57.89 57.76 58.053 0 16 9 2 0.910178479504791 0.000481842754090902 0.00569020237312759 1.2232E-06 1 13561 154.84 88.248 1 20559000 18712 15795 20926 16603 23719 22418 22242 21130 15767 13195 17714 14926 20975 17092 23878 22220 22534 21643 15832 12913 1 1 1 1 1 1 1 1 1 1 1720 437 1511 1591 1912 1912 GLSEDTTEETLKESFDGSVR 20 Unmodified _GLSEDTTEETLKESFDGSVR_ 0 0 0 1 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.125732421875 3 734.013243 2199.0179 33413.9318960289 1.5909 0.0011678 208140 152.78 208140 152.78 887.123475291255 80.088 0.73326 80.088 79.818 80.551 0 101 24 6 0.971600384486601 0.0109152126800249 0.0840425095532842 1.8657E-41 1 18745 342.12 310.24 1 59041000 40441 25408 41574 27351 44503 41740 50643 42913 31351 21510 38272 24013 41845 28196 45057 41251 50727 43647 31752 21248 1 1 1 1 1 1 1 1 1 1 1721 437 1512 1592 1913 1913 GLSHSPWAVK 10 Phospho (STY) _GLSHS(ph)PWAVK_ GLS(0.002)HS(0.998)PWAVK GLS(-27.43)HS(27.43)PWAVK 0 0 1 0 Q96KB5 Q96KB5 Q96KB5 PBK Lymphokine-activated killer T-cell-originated protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.62890625 3 387.853263 1160.53796 45224.5881687407 1.2491 0.00048445 393900 152.77 393900 152.78 540.628629897352 64.158 0.6946 64.158 63.721 64.415 0 84 23 7 0.620282866313536 0.00181960272193258 0.0121827340697672 8.2153E-05 1 15085 127.52 90.826 2 19414000 7030.7 16183 8192.1 16230 5377.5 8186.7 5533.1 9676.3 16227 1770.6 6657.2 15288 8148 16532 5635.5 8586.9 5917.6 9701.6 15557 1891.2 1 1 1 1 1 1 1 1 1 1 1722 1708 1513 1593 1914 1914 3147 GLSLEHQK 8 Phospho (STY) _GLS(ph)LEHQK_ GLS(1)LEHQK GLS(161.17)LEHQK 0 0 1 0 Q765P7 Q765P7 Q765P7 MTSS1L MTSS1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.398010253906 2 496.234057 990.453561 37276.1167668499 2.0788 0.0010316 461800 229.16 461800 229.16 725.396305102253 50.033 0.43601 50.033 49.747 50.183 0 33 14 3 0.896778378983861 0.00160298621606818 0.0331040157017388 1.3477E-05 1 11610 161.17 111.82 1 23739000 37532 27155 40232 25118 24916 38534 26530 28025 26022 8838 35525 25641 40172 26130 26212 37911 26914 28784 25698 8970.7 1 1 1 1 1 1 1 1 1 1 1723 1311 1514 1594 1915 1915 2341 GLSPVKEPK 9 Phospho (STY) _GLS(ph)PVKEPK_ GLS(1)PVKEPK GLS(61.03)PVKEPK 0 0 1 1 Q8TC05 Q8TC05 Q8TC05 MDM1 Nuclear protein MDM1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.678344726563 3 345.514247 1033.52091 42203.3389860695 1.8427 0.00063669 663250 229.16 663250 229.16 574.677652982205 54.212 0.41476 54.212 53.945 54.36 0 32 13 3 0.753210029495491 0.00194950213640388 0.0331179080255253 0.015151 1 12628 61.03 37.657 1 11072000 17074 12982 18095 13303 14202 16802 14388 14616 13363 2482.3 16161 12266 18115 13696 14643 16663 14608 14820 13229 2675.6 1 1 1 1 1 1 1 1 1 1 1724 1540 1515 1595 1916 1916 2828 GLVEPVDVVDNADGTQTVNYVPSR 24 Unmodified _GLVEPVDVVDNADGTQTVNYVPSR_ 0 0 0 0 P21333 P21333 P21333 FLNA Filamin-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 925.150329589844 3 848.757397 2543.25036 33511.0956379392 1.7635 0.0014968 89999 76.388 90001 76.389 925.47962489269 81.397 0.39997 81.397 81.164 81.564 1.4211E-14 30 13 3 0.934540273730895 0.000679528973865057 0.0114617339206704 8.1187E-18 1 19058 232.57 217.91 1 9693800 4132.1 4224.4 4259.7 4317.6 4924.7 4107.1 4185.9 5713.9 4582.5 25774 3910.5 3991.2 4288.7 4424.1 4948.3 4194.8 4307.2 6445.8 4504.8 24402 1 1 1 1 1 1 1 1 1 1 1725 451 1516 1596 1917 1917 GLVSFGK 7 Unmodified _GLVSFGK_ 0 0 0 0 REV__Q8WXH0 REV__Q8WXH0 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 389.250457763672 3 236.474402 706.401375 51548.5277752518 -1.059 -0.00025042 646060 152.78 646050 152.78 389.249838719934 51.702 0.43203 51.702 51.431 51.863 0 22 14 2 0.944501393458216 0.000719747898372941 0.00564518976834669 0.055382 1 12022 35.201 1.6851 1 11595000 28461 38006 27759 37449 23355 29177 23576 31567 38762 1632.2 26929 35900 27938 38353 23978 29648 24404 31621 37603 2267.5 1 1 1 1 1 1 1 1 1 1 + 1726 2343 1517 1597 1918 1918 GLVVDMDGFEEER 13 Unmodified _GLVVDMDGFEEER_ 0 0 0 0 P49588 P49588 P49588 AARS Alanine--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.922058105469 2 748.340306 1494.66606 34279.5531083123 1.6026 0.0011993 153110 114.58 153120 114.58 862.921474787421 84.363 0.61935 84.363 84.044 84.663 -1.4211E-14 49 21 3 0.98770530485535 0.00126514741774694 0.0202615933008211 2.9431E-10 1 19697 199.19 136.99 1 20775000 18657 18630 18269 17569 20596 19557 19485 17362 17138 21018 17653 17593 18444 18136 20745 19526 19823 18134 17010 20193 1 1 1 1 1 1 1 1 1 1 1727 642 1518 1598 1919 1919 GLVYETSVLDPDEGIR 16 Unmodified _GLVYETSVLDPDEGIR_ 0 0 0 0 O75390 O75390 O75390 CS Citrate synthase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.689270019531 3 588.300108 1761.87849 40099.5814966828 1.5671 0.00092194 129850 76.388 129850 76.389 665.022478573584 85.325 0.58004 85.325 84.953 85.533 0 51 19 4 0.865594077006245 0.00204325676591143 0.0151374536679205 3.5258E-05 1 19928 129.93 105.39 1 8708100 4290.3 5425.2 4504.6 4737.2 3822.4 4778.8 4550.2 4692.6 4017.6 6247.3 4060.5 5121 4516.6 4906.7 3929.1 4798.9 4582.2 4898.6 3986.8 5991.2 1 1 1 1 1 1 1 1 1 1 1728 182 1519 1599 1920 1920 GLWSTDSAEEDKETK 15 Phospho (STY) _GLWSTDS(ph)AEEDKETK_ GLWS(0.021)T(0.164)DS(0.815)AEEDKETK GLWS(-15.91)T(-6.98)DS(6.98)AEEDKET(-84.26)K 0 0 1 1 Q99549 Q99549 Q99549 MPHOSPH8 M-phase phosphoprotein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.08154296875 3 592.583895 1774.72985 34210.8420685398 2.7677 0.0016401 386720 229.16 386720 229.16 822.081168758773 68.004 0.82682 68.004 67.645 68.472 0 59 27 3 0.970586616071549 0.00195632067251813 0.0268187677611613 2.5102E-05 1 15954 133.16 115.68 4 12849000 14517 13008 15921 13800 12315 15009 14681 13366 14481 13297 13742 12293 15911 14140 12744 14995 14825 13871 14297 12830 1 1 1 1 1 1 1 1 1 1 1729 1770 1520 1600 1921 1921 3256 GLYDGPVCEVSVTPK 15 Phospho (STY) _GLYDGPVCEVSVT(ph)PK_ GLYDGPVCEVSVT(1)PK GLY(-154.84)DGPVCEVS(-36.78)VT(36.78)PK 0 0 1 0 Q16555 Q16555 Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.368041992188 3 567.591556 1699.75284 36099.7197645401 2.1381 0.0012136 269160 152.78 269170 152.78 720.36786192237 76.864 0.57899 76.864 76.617 77.196 0 71 19 5 0.964048915576972 0.00690161850248022 0.0610405500475488 2.9776E-10 1 18023 177.05 144.32 3 32786000 17863 7349.5 19933 7475 5968.6 21578 7054.1 12495 8357.6 15374 16910 6943.5 19784 7894.1 6898.1 20914 7164 13348 8191.1 14765 1 1 1 1 1 1 1 1 1 1 1730 1107 1521 1601 1922 1922 4583 GMGSLDAMDK 10 Oxidation (M),Phospho (STY) _GM(ox)GS(ph)LDAMDK_ GM(1)GSLDAMDK GMGS(1)LDAMDK GM(54.89)GSLDAM(-54.89)DK GMGS(70.09)LDAMDK 0 1 1 0 P12268 P12268 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.870666503906 2 560.706157 1119.39776 34808.576115754 1.3752 0.0007711 408710 229.16 408710 229.16 789.869616297438 54.708 0.3685 54.708 54.556 54.924 0 20 12 2 0.95895443649702 0.000591856097416299 0.0154455019333036 0.014205 1 12781 70.089 52.764 2 10280000 20843 17785 20660 18436 17860 23333 19300 20982 19630 13084 19722 16804 20783 18968 18310 23165 19585 21532 19355 12805 1 1 1 1 1 1 1 1 1 1 1731 369 1522 1602 1923 1923 47 600 GMGSLDAMDK 10 Phospho (STY) _GMGS(ph)LDAMDK_ GMGS(1)LDAMDK GMGS(145.23)LDAMDK 0 0 1 0 P12268 P12268 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 781.870727539063 2 552.7087 1103.40285 34159.4529638113 2.0774 0.0011482 414620 229.16 414620 229.16 781.872327427736 69.19 0.57624 69.19 68.912 69.489 0 60 19 4 0.975286078023843 0.000661044260782771 0.0138952262977779 3.3191E-06 1 16208 145.23 109.28 1 30140000 25980 19661 26648 18611 23701 25394 23915 26011 21534 15160 24586 18567 26759 19282 24226 25187 24268 26524 21348 14877 1 1 1 1 1 1 1 1 1 1 1732 369 1522 1603 1924 1924 600 GMKDDKEEEEDGTGSPQLNNR 21 Phospho (STY) _GMKDDKEEEEDGTGS(ph)PQLNNR_ GMKDDKEEEEDGT(0.07)GS(0.93)PQLNNR GMKDDKEEEEDGT(-11.22)GS(11.22)PQLNNR 0 0 1 2 P49407 P49407 P49407 ARRB1 Beta-arrestin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.127136230469 4 608.003521 2427.98498 35499.7496655208 1.8623 0.0011323 282680 171.87 282680 171.87 780.127160498004 42.429 0.63097 42.429 42.194 42.825 0 58 21 5 0.915040432502891 0.00245435545626628 0.0626559157254767 6.7421E-08 1 9693 155.14 137.76 2 17950000 18621 14175 19341 13856 36386 20954 38971 26069 15948 45484 17623 13389 19647 14361 35933 20836 38915 27321 16712 43432 1 1 1 1 1 1 1 1 1 1 1733 637 1523 1604 1925 1925 1054 GNAEGSSDEEGKLVIDEPAKEK 22 Phospho (STY) _GNAEGS(ph)SDEEGKLVIDEPAKEK_ GNAEGS(0.832)S(0.168)DEEGKLVIDEPAKEK GNAEGS(6.95)S(-6.95)DEEGKLVIDEPAKEK 0 0 1 2 P51858 P51858 P51858 HDGF Hepatoma-derived growth factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.687744140625 4 596.273163 2381.06354 34402.102306042 2.8581 0.0017042 384320 229.16 384330 229.16 825.68653088201 62.889 0.66872 62.889 62.703 63.372 0 77 22 5 0.956197313727879 0.00306074366459956 0.0212822494925404 8.4765E-17 1 14760 217.07 193.5 2 28276000 10716 10508 10515 10054 9373.9 9823.1 9106.3 12489 11370 77363 10139 9924.3 10585 10347 9578.4 10036 9344.3 14756 11123 73136 1 1 1 1 1 1 1 1 1 1 1734 684 1524 1605 1926 1926 1152 GNDPLTSSPGR 11 Phospho (STY) _GNDPLTSS(ph)PGR_ GNDPLTS(0.008)S(0.992)PGR GNDPLT(-50.57)S(-21.12)S(21.12)PGR 0 0 1 0 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.3330078125 2 590.753342 1179.49213 36978.0172441787 1.3293 0.00078528 193960 114.58 193960 114.58 705.335438169111 40.843 1.0441 40.843 40.351 41.395 0 156 35 6 0.825963595641963 0.00255082774989884 0.0610399040355245 9.3351E-07 2 9220 151.3 95.288 3 1950000000 50071 38582 51266 37607 56076 50115 56890 48084 40591 13446 47384 36441 51614 38874 56618 49675 57424 48715 40743 13774 2 2 2 2 2 2 2 2 2 2 1735 647 1525 1606 1927;1928 1927 1071;1072 GNEFFCEVDEDYIQDK 16 Unmodified _GNEFFCEVDEDYIQDK_ 0 0 0 0 P67870 P67870 P67870 CSNK2B Casein kinase II subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.723571777344 3 669.947406 2006.82039 34466.399298279 2.0882 0.001399 228040 152.77 228040 152.78 823.056891153158 91.914 0.74472 91.914 91.509 92.254 -1.4211E-14 81 25 6 0.967427374584573 0.00652095871589664 0.119390979403722 1.3228E-10 1 21404 185.33 156.03 1 26573000 11209 14622 12463 13975 17911 12552 16191 14843 14937 20014 10611 13809 12541 14366 17829 12712 16530 15403 14792 19189 1 1 1 1 1 1 1 1 1 1 1736 786 1526 1607 1929 1929 GNFGGSFAGSFGGAGGHAPGVAR 23 Phospho (STY) _GNFGGSFAGS(ph)FGGAGGHAPGVAR_ GNFGGS(0.001)FAGS(0.999)FGGAGGHAPGVAR GNFGGS(-29.64)FAGS(29.64)FGGAGGHAPGVAR 0 0 1 0 P52272 P52272 P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.366821289063 3 705.644593 2113.91195 35440.2786228078 1.656 0.0011686 108250 76.386 108250 76.388 782.365011160477 68.596 0.40407 68.596 68.359 68.763 0 49 13 5 0.937196821138447 0.00303057838361965 0.0274256000786478 1.3211E-08 1 16093 169.57 146.67 2 17490000 7056.9 6186.9 8124.2 6940.1 7121.3 7769.8 8656.4 8854.3 6323.9 13797 6681.6 5848.8 8109.8 7093.3 7305.5 7790.6 8673.9 9255.2 6338.8 13196 1 1 1 1 1 1 1 1 1 1 1737 688 1527 1608 1930 1930 1156 GNIETTSEDGQVFSPK 16 Phospho (STY) _GNIETTSEDGQVFS(ph)PK_ GNIETTSEDGQVFS(1)PK GNIET(-118.22)T(-102.83)S(-80.9)EDGQVFS(80.9)PK 0 0 1 0 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1124.0498046875 2 894.888021 1787.76149 29800.4729184789 1.1993 0.0010732 256080 229.16 256080 229.17 1124.05101449907 63.965 0.43145 63.965 63.721 64.152 0 41 14 4 0.957375870759764 0.000422015347745168 0.0193325387502967 1.0613E-22 1 15039 269.61 224.28 4 9065300 6887.9 7044.1 6967.4 6892.9 4839.3 7885.4 4666.7 7593.7 8586.6 24011 6518 6653.4 6984.8 7102.6 5037.9 7901.2 4865.9 8351.8 8306.1 22785 1 1 1 1 1 1 1 1 1 1 1738 1183 1528 1609 1931 1931 2062 GNISFVAFPVSNTNSPTK 18 Phospho (STY) _GNISFVAFPVSNTNS(ph)PTK_ GNISFVAFPVSNT(0.023)NS(0.954)PT(0.023)K GNIS(-116.18)FVAFPVS(-53.15)NT(-16.15)NS(16.15)PT(-16.19)K 0 0 1 0 Q14188 Q14188 Q14188 TFDP2 Transcription factor Dp-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.753173828125 3 653.978579 1958.91391 34928.9775638825 2.1519 0.0014073 233610 152.77 233610 152.78 807.088385517964 94.415 0.34618 94.415 94.224 94.57 0 18 11 2 0.856509580154649 0.000564305635443352 0.0272057362431785 2.4927E-07 1 22001 139.51 112.25 5 6885300 5551.3 4561.5 5684.9 5140.3 5923 4645.3 6488 6373.7 4370.8 16463 5253.5 4312.4 5720.7 5234.6 6002.6 4731 6519.1 6822.4 4402.5 15650 1 1 1 1 1 1 1 1 1 1 1739 998 1529 1610 1932 1932 1698 GNLELRPGGAHPGTCSPSRPGS 22 Phospho (STY) _GNLELRPGGAHPGT(ph)CSPSRPGS_ GNLELRPGGAHPGT(0.489)CS(0.489)PS(0.022)RPGS(0.001) GNLELRPGGAHPGT(0)CS(0)PS(-13.52)RPGS(-25.94) 0 0 1 2 Q96SN8 Q96SN8 Q96SN8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.736633300781 3 762.014469 2283.02158 36370.833818454 1.5539 0.0011841 100240 76.387 100240 76.388 838.734874775887 42.981 0.23494 42.981 42.855 43.09 0 9 7 2 0.614442808118277 0.000448296449472912 0.00387064622365589 0.024101 1 9843 80.984 66.826 4 12443000 8412.6 11151 7913.3 10469 10984 10182 13246 10768 11228 8123.5 7958.6 10531 8038.8 10786 10996 10242 13320 11023 11165 7898.5 1 1 1 1 1 1 1 1 1 1 1740 1750 1530 1611 1933 1933 3208;4741 GNPTVEVDLFTSK 13 Phospho (STY) _GNPTVEVDLFT(ph)SK_ GNPTVEVDLFT(0.904)S(0.096)K GNPT(-166.28)VEVDLFT(9.73)S(-9.73)K 0 0 1 0 P06733 P06733 P06733 ENO1 Alpha-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.007751464844 3 496.232357 1485.67524 38460.0970476027 1.1178 0.0005547 307870 152.77 307870 152.78 649.007379581524 88.12 0.54756 88.12 87.877 88.424 0 41 18 3 0.78315982909578 0.00130378595784894 0.0219991945968378 1.3362E-10 1 20557 191.44 43.748 3 5518300 4601.6 5400.6 4356.1 5387.4 4712.3 5219.3 4610.5 4722.9 5373.4 8404.9 4353.4 5101.7 4404.6 5529.7 4760.3 5248.7 4718.8 5009.9 5269.5 8023.5 1 1 1 1 1 1 1 1 1 1 1741 314 1531 1612 1934 1934 4374 GNSLPCVLEQK 11 Phospho (STY) _GNS(ph)LPCVLEQK_ GNS(1)LPCVLEQK GNS(81.15)LPCVLEQK 0 0 1 0 Q08495 Q08495 Q08495 DMTN Dematin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.314514160156 3 442.203744 1323.5894 41479.0486838624 1.3185 0.00058303 345490 152.78 345490 152.78 594.979076566807 75.785 0.49 75.785 75.545 76.035 1.4211E-14 53 16 4 0.97898737917131 0.00218060073266378 0.018157353210629 0.0065357 1 17777 81.148 62.32 1 14496000 3199.8 6287.6 3154.1 7831.3 11530 2444.7 12611 6664.7 5461.2 4014.1 3027.6 5948.4 3283.2 7860.1 11215 2751.3 12589 6642.6 5691.8 3934 1 1 1 1 1 1 1 1 1 1 1742 889 1532 1613 1935 1935 1448 GNSPPSSGEACREEK 15 Phospho (STY) _GNS(ph)PPSSGEACREEK_ GNS(0.99)PPS(0.009)S(0.001)GEACREEK GNS(20.47)PPS(-20.47)S(-29.66)GEACREEK 0 0 1 1 P41227 P41227 P41227 NAA10 N-alpha-acetyltransferase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 715.001953125 3 562.225936 1683.65598 36745.9482234461 2.1368 0.0012014 271730 152.78 271730 152.78 715.335432870384 29.807 1.5391 29.807 28.926 30.465 0 167 51 6 0.756066640954766 0.00163896828313011 0.0181497640728876 0.0024227 1 6558 95.034 71.554 3 138750000 12851 20615 12662 17797 18380 13907 18964 17483 21166 2241.2 12160 19458 12832 18383 18325 14162 19336 17465 20792 2515 1 1 1 1 1 1 1 1 1 1 1743 578 1533 1614 1936 1936 928 GNSRPGTPSAEGGSTSSTLR 20 Phospho (STY) _GNSRPGT(ph)PSAEGGSTSSTLR_ GNS(0.003)RPGT(0.936)PS(0.06)AEGGSTSSTLR GNS(-24.76)RPGT(11.91)PS(-11.91)AEGGS(-36.52)T(-36.52)S(-42.18)S(-53.14)T(-64.5)LR 0 0 1 1 P35269 P35269 P35269 GTF2F1 General transcription factor IIF subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.355285644531 3 666.967402 1997.88038 35983.3444036712 2.0538 0.0013698 114530 76.387 114530 76.389 743.35415486206 29.927 0.38412 29.927 29.749 30.133 0 40 12 4 0.803813761009271 0.004443437990264 0.0870962859381319 0.00014575 1 6680 108.19 85.093 8 26381000 15944 18322 16241 17227 14378 17731 15647 16923 17796 2702.4 15089 17302 16316 17763 14721 17745 15925 17088 17468 2936.3 1 1 1 1 1 1 1 1 1 1 1744 546 1534 1615 1937 1937 882;883;4449 GNSRPGTPSAEGGSTSSTLR 20 2 Phospho (STY) _GNS(ph)RPGTPS(ph)AEGGSTSSTLR_ GNS(0.998)RPGT(0.477)PS(0.525)AEGGSTSSTLR GNS(23.48)RPGT(-0.41)PS(0.41)AEGGS(-47.47)T(-46.87)S(-46.97)S(-46.59)T(-46.2)LR 0 0 2 1 P35269 P35269 P35269 GTF2F1 General transcription factor IIF subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.345642089844 3 693.622845 2077.84671 35298.7470067136 1.8251 0.0012659 110130 76.388 110130 76.389 770.344382954051 32.907 0.66942 32.907 32.586 33.256 0 90 22 5 0.896756780904541 0.00306408946166627 0.0222251153854064 6.539E-05 1 7322 107.7 87.801 28 91608000 11894 9662.5 13407 11395 9949.3 13619 9865.5 11123 12911 2382.6 11260 9137.7 13371 11630 10302 13525 10130 11325 12610 2500.9 1 1 1 1 1 1 1 1 1 1 1745 546 1534 1616 1938 1938 882;883;4449 GNVVPSPLPTR 11 Phospho (STY) _GNVVPS(ph)PLPTR_ GNVVPS(0.997)PLPT(0.003)R GNVVPS(25.36)PLPT(-25.36)R 0 0 1 0 Q9Y2V2 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.390319824219 2 608.80792 1215.60129 36000.9223094067 1.6891 0.0010283 188210 114.58 188210 114.58 723.389531788534 59.139 0.95686 59.139 58.636 59.593 0 131 32 5 0.819376274840424 0.00322922841148752 0.057098511659699 0.008125 1 13770 86.467 64.235 2 252170000 26607 33482 23400 29880 26452 24594 25134 28323 30224 16522 25165 31609 23782 30815 26650 24966 25787 28764 29606 16213 1 1 1 1 1 1 1 1 1 1 1746 2256 1535 1617 1939 1939 4166 GNVVPSPLPTRR 12 Phospho (STY) _GNVVPS(ph)PLPTRR_ GNVVPS(0.989)PLPT(0.011)RR GNVVPS(19.7)PLPT(-19.7)RR 0 0 1 1 Q9Y2V2 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 534.627075195313 3 458.241409 1371.7024 41511.9690605526 0.55792 0.00025566 166700 76.387 166700 76.387 534.628021772725 50.75 1.0113 50.75 50.183 51.195 0 101 34 4 0.924684862628951 0.00842950206854854 0.109546290048987 0.013591 1 11749 66.022 45.64 2 115470000 25712 31578 29808 34156 42455 32024 41425 34870 37549 2309.2 24345 29845 29932 34879 42319 32234 42110 34936 37214 2981.4 1 1 1 1 1 1 1 1 1 1 1747 2256 1536 1618 1940 1940 4166 GPAGEAGASPPVRR 14 Phospho (STY) _GPAGEAGAS(ph)PPVRR_ GPAGEAGAS(1)PPVRR GPAGEAGAS(99.91)PPVRR 0 0 1 1 Q13425 Q13425 Q13425 SNTB2 Beta-2-syntrophin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 544.280944824219 3 467.892669 1400.65618 42497.6828172218 1.1162 0.00052228 163260 76.388 163260 76.388 544.27983773551 32.047 0.94125 32.047 31.471 32.413 0 101 31 5 0.935541373095314 0.0029719378041539 0.105413769143805 0.00080979 1 7153 99.915 67.181 1 15815000 10087 10870 9104.4 11472 10811 9271.8 12200 10231 11889 1995.2 9541.2 10272 9247.6 11707 10890 9407.6 12343 10286 11744 2115.5 1 1 1 1 1 1 1 1 1 1 1748 951 1537 1619 1941 1941 1582 GPALTPIRDEEWGGHSPR 18 Phospho (STY) _GPALTPIRDEEWGGHS(ph)PR_ GPALTPIRDEEWGGHS(1)PR GPALT(-79.72)PIRDEEWGGHS(79.72)PR 0 0 1 1 Q86X29 Q86X29 Q86X29 LSR Lipolysis-stimulated lipoprotein receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.376159667969 3 685.652977 2053.9371 34314.5475011183 1.6319 0.0011189 111410 76.387 111410 76.388 762.372854546624 60.865 0.7628 60.865 60.628 61.391 0 70 25 4 0.988739475423435 0.00424377759262901 0.0418949197042356 0.0032702 1 14270 92.518 72.778 2 25125000 10346 24246 13753 23558 8769.8 12543 7418.8 14099 25501 10063 9803 22900 13589 24054 9191.9 13103 8111.8 14385 24395 9801.5 1 1 1 1 1 1 1 1 1 1 1749 1395 1538 1620 1942 1942 2535 GPASQFYITPSTSLSPR 17 Phospho (STY) _GPASQFYITPSTSLS(ph)PR_ GPASQFYITPSTS(0.001)LS(0.999)PR GPAS(-118.22)QFY(-111.71)IT(-50.97)PS(-41.82)T(-41.82)S(-32.56)LS(32.56)PR 0 0 1 0 P49750 P49750 P49750 YLPM1 YLP motif-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1060.02941894531 2 944.945673 1887.87679 30694.6535892987 1.7517 0.0016552 121260 114.58 121260 114.58 1060.0292114586 80.561 0.40596 80.561 80.404 80.81 0 28 13 3 0.583032373024606 0.000327795228535408 0.00887386013243937 4.2161E-07 1 18876 153.75 126.74 7 7592200 2622.8 4466.2 3340.2 4146.7 5447.2 3244.5 7041.3 5773.4 5050.3 23633 2484.5 4217.3 3350.9 4262.7 5424.1 3368.6 7036.4 6405.3 5067.5 22387 1 1 1 1 1 1 1 1 1 1 1750 648 1539 1621 1943 1943 1074 GPGASGEQPEPGEAAAGGAAEEAR 24 Unmodified _GPGASGEQPEPGEAAAGGAAEEAR_ 0 0 0 0 Q9H3P7 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.386047363281 3 722.661316 2164.96212 34232.3748340729 2.0174 0.0014579 105700 76.389 105710 76.39 799.384795920526 38.792 0.6084 38.792 38.325 38.933 -7.1054E-15 38 20 3 0.975016638719538 0.00211055303749826 0.0258008061863695 6.8878E-05 1 8805 111.65 93.26 1 14506000 8122.6 8056.4 8066.3 7911.7 7709.2 7962.9 7093.1 8567.7 7908.7 4754.3 7685.9 7609.7 8120 8133.2 7836.5 7995.8 7272.1 8713.8 7769 4675.1 1 1 1 1 1 1 1 1 1 1 1751 1933 1540 1622 1944 1944 GPGGSPGGLQK 11 Phospho (STY) _GPGGS(ph)PGGLQK_ GPGGS(1)PGGLQK GPGGS(100.69)PGGLQK 0 0 1 0 Q96A00 Q96A00 Q96A00 PPP1R14A Protein phosphatase 1 regulatory subunit 14A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 746.900756835938 2 517.736964 1033.45937 36807.1815171255 2.2328 0.001156 442620 229.16 442630 229.16 746.899733695273 45.791 0.49455 45.791 45.526 46.02 0 50 16 4 0.82424415625534 0.00232576531619729 0.0382379118584669 0.00064087 1 10525 100.69 54.784 1 65616000 11625 71728 11821 70924 50264 9556.1 52560 43269 74589 6350.1 11001 67755 12367 71885 48791 12752 53994 42287 72662 6980.8 1 1 1 1 1 1 1 1 1 1 1752 1641 1541 1623 1945 1945 3035 GPGGSQGSQGPSPQGAR 17 Phospho (STY) _GPGGSQGSQGPS(ph)PQGAR_ GPGGSQGSQGPS(1)PQGAR GPGGS(-72.15)QGS(-42.89)QGPS(42.89)PQGAR 0 0 1 0 Q96MG7 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 611.954040527344 3 535.56528 1603.67401 43488.3210125612 1.3574 0.00072696 142630 76.387 142630 76.388 611.952281058439 25.87 0.25705 25.87 25.759 26.016 3.5527E-15 14 8 2 0.886691489717996 0.000151859535177234 0.00279915162296173 0.0061766 1 5795 84.689 65.857 3 6693800 4166.6 4084.6 4146 3677.2 3763.2 3885 3059.4 2874.2 3793.2 2089.8 3942.6 3856.2 4169.9 3803.8 3832.3 3876.1 3168.1 2985.2 3711.6 2034.3 1 1 1 1 1 1 1 1 1 1 1753 1715 1542 1624 1946 1946 3157 GPGLGSTQGQTIALPAQGLIEFR 23 Phospho (STY) _GPGLGS(ph)TQGQTIALPAQGLIEFR_ GPGLGS(0.853)T(0.147)QGQTIALPAQGLIEFR GPGLGS(7.62)T(-7.62)QGQT(-73.27)IALPAQGLIEFR 0 0 1 0 Q00577 Q00577 Q00577 PURA Transcriptional activator protein Pur-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 874.464050292969 3 797.740451 2390.19952 33421.2864853893 1.5603 0.0012447 95754 76.387 95756 76.388 874.462428713412 100.58 0.16836 100.58 100.48 100.65 0 12 5 3 0.337757587864284 0.000122759795563273 0.00378466292528293 2.3923E-08 1 23544 164.35 145.84 3 39006000 5191.4 5872 5629.9 7983.7 6850.4 7141.8 7271.8 7892.4 7232.8 37224 4914.1 5559.1 5659.5 8055 6885.7 7275.7 7380.8 9009.2 7138.2 35233 1 1 1 1 1 1 1 1 1 1 1754 823 1543 1625 1947 1947 1320 GPGQVPTATSALSLELQEVEPLGLPQASPSR 31 Phospho (STY) _GPGQVPTATSALSLELQEVEPLGLPQAS(ph)PSR_ GPGQVPTATSALSLELQEVEPLGLPQAS(0.817)PS(0.183)R GPGQVPT(-97.01)AT(-84.72)S(-78.29)ALS(-71.7)LELQEVEPLGLPQAS(6.51)PS(-6.51)R 0 0 1 0 Q6P2E9 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.701110839844 4 803.157698 3208.60169 33943.2468656622 1.5564 0.00125 71333 57.291 71334 57.293 860.950550386724 100.8 0.39267 100.8 100.59 100.98 -1.4211E-14 60 13 8 0.973650623108046 0.0298633367437884 0.333480484297901 3.0121E-08 1 23613 167.48 155.05 6 356220000 9413.6 15392 9272.1 14485 4016.4 13619 6637.3 14375 20785 52484 8907.1 14535 9285.2 14914 4436.6 13798 7017.8 15972 19908 49752 1 1 1 1 1 1 1 1 1 1 1755 1258 1544 1626 1948 1948 2233 GPGSPPRTPPAPGPPSFEEQLR 22 2 Phospho (STY) _GPGS(ph)PPRT(ph)PPAPGPPSFEEQLR_ GPGS(1)PPRT(1)PPAPGPPSFEEQLR GPGS(67)PPRT(46.45)PPAPGPPS(-46.45)FEEQLR 0 0 2 1 Q6ZTN6 Q6ZTN6 Q6ZTN6 ANKRD13D Ankyrin repeat domain-containing protein 13D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.419738769531 3 811.032957 2430.07704 34094.8303887422 1.4654 0.0011885 94184 76.386 94185 76.387 887.419374290787 70.397 0.83589 70.397 69.96 70.795 0 59 28 3 0.973728320845744 0.000677465867285735 0.00256329141831015 0.00017851 1 16529 102.5 83.292 3 22758000 8710.8 6130.4 10230 6985.6 6383.6 9682.9 7074.6 7276.4 7279.1 13753 8248.3 5796 10168 7163.8 6715.1 9581 7173.8 7806.5 7173.6 13119 1 1 1 1 1 1 1 1 1 1 1756 1300 1545 1627 1949 1949 2321;4634 GPIHSPVELK 10 Phospho (STY) _GPIHS(ph)PVELK_ GPIHS(1)PVELK GPIHS(129.37)PVELK 0 0 1 0 Q16649 Q16649 Q16649 NFIL3 Nuclear factor interleukin-3-regulated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.972717285156 3 386.196918 1155.56892 42531.9794802122 0.95128 0.00036738 395590 152.77 395590 152.78 538.971874297078 59.683 0.65468 59.683 59.396 60.05 0 67 22 4 0.968097914960229 0.00296400085599827 0.0575032632347745 6.8952E-05 1 13966 129.37 68.85 1 27825000 12437 14133 12841 14481 5749.8 12278 6511.6 9630.4 14631 2090.8 11770 13353 12822 14812 6272 12376 6814 9825.6 14092 2191.6 1 1 1 1 1 1 1 1 1 1 1757 1111 1546 1628 1950 1950 1936 GPKPEPPGSGSPAPPR 16 Phospho (STY) _GPKPEPPGSGS(ph)PAPPR_ GPKPEPPGS(0.159)GS(0.841)PAPPR GPKPEPPGS(-7.24)GS(7.24)PAPPR 0 0 1 1 Q9UKJ3 Q9UKJ3 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.3671875 3 536.590767 1606.75047 38110.5542989277 1.4945 0.00080195 284710 152.78 284720 152.78 689.700415637466 40.234 0.94282 40.234 39.715 40.658 0 98 31 4 0.849714087061568 0.00194518295504148 0.0115228133403967 3.8091E-05 1 9117 127.9 112.14 2 73483000 26439 26688 28281 25821 27807 27642 28374 23569 29114 4484.8 25025 25206 28367 26594 28256 27583 28876 23934 28696 4768.4 1 1 1 1 1 1 1 1 1 1 1758 2173 1547 1629 1951 1951 3915 GPLSPFNSR 9 Phospho (STY) _GPLS(ph)PFNSR_ GPLS(0.999)PFNS(0.001)R GPLS(28.74)PFNS(-28.74)R 0 0 1 0 A1L390 A1L390 A1L390 PLEKHG3 Pleckstrin homology domain-containing family G member 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.322082519531 2 527.739506 1053.46446 39128.9243846084 1.9593 0.001034 217120 114.58 217120 114.58 642.321097855132 66.997 0.5488 66.997 66.72 67.269 0 47 18 3 0.756948587240964 0.00205060947718666 0.0598338926496059 0.013407 2 15748 75.788 42.457 2 15928000 24357 13126 22957 11460 29820 26070 30647 20372 11678 9456.8 23043 12390 23282 12103 29850 25425 30637 20940 12328 9376.2 2 2 2 2 2 2 2 2 2 2 1759 4 1548 1630 1952;1953 1953 9 GPLSSAPEIVHEDLK 15 Phospho (STY) _GPLS(ph)SAPEIVHEDLK_ GPLS(0.571)S(0.429)APEIVHEDLK GPLS(1.24)S(-1.24)APEIVHEDLK 0 0 1 0 Q00536 Q00536 Q00536 CDK16 Cyclin-dependent kinase 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.715087890625 3 557.937832 1670.79167 37598.7466020868 2.2937 0.0012798 273820 152.78 273830 152.78 711.047706585812 79.251 1.8736 79.251 78.347 80.22 0 174 64 5 0.981894472391469 0.00148501120022607 0.0538927484851554 6.5035E-07 1 18593 145.91 118.58 2 17519000 7442.1 8535.1 7221.6 8061.5 7832.5 8217.1 8583.7 7324.5 9405.3 8893.5 7041.3 8060.1 7293.3 8308.7 7923.8 8235 8723.9 7649.6 9245.3 8543.8 1 1 1 1 1 1 1 1 1 1 1760 822 1549 1631 1954 1954 1317 GPPASSPAPAPK 12 Phospho (STY) _GPPASS(ph)PAPAPK_ GPPAS(0.14)S(0.86)PAPAPK GPPAS(-7.88)S(7.88)PAPAPK 0 0 1 0 Q15942 Q15942 Q15942 ZYX Zyxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.937438964844 2 578.773546 1155.53254 34923.3869738918 1.8626 0.001078 395950 229.16 395950 229.16 807.936447212702 39.786 0.64027 39.786 39.48 40.12 0 61 21 4 0.801186777761149 0.00124464985200675 0.0418022884391803 3.1414E-07 1 9007 158.58 120.28 2 21637000 24283 21084 27138 19133 12437 26166 12100 17945 19690 4400.3 22988 19906 26982 19877 13491 25819 12541 18451 19106 4558.7 1 1 1 1 1 1 1 1 1 1 1761 1099 1550 1632 1955 1955 1906 GPPDFSSDEEREPTPVLGSGAAAAGR 26 Phospho (STY) _GPPDFSSDEEREPT(ph)PVLGSGAAAAGR_ GPPDFSSDEEREPT(1)PVLGSGAAAAGR GPPDFS(-82.84)S(-86.86)DEEREPT(43.55)PVLGS(-43.55)GAAAAGR 0 0 1 1 P42166;P42167 P42166;P42167 P42167 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 960.787475585938 3 884.064211 2649.1708 31606.4313794828 1.9366 0.0017121 86405 76.388 86407 76.39 960.786462371838 62.921 1.3651 62.921 62.555 63.92 0 191 46 6 0.984918135783729 0.00654985268301486 0.0692551302273659 1.3548E-24 1 14739 275.5 252.52 4 324860000 15822 9681.9 16860 10253 7175.2 16242 7558.5 13350 11296 21750 14975 9149.4 16799 10589 7862.2 16017 7777.8 14158 10987 20789 1 1 1 1 1 1 1 1 1 1 1762 582;581 1551 1633 1956 1956 935;4459 GPPDFSSDEEREPTPVLGSGAAAAGR 26 Phospho (STY) _GPPDFSSDEEREPT(ph)PVLGSGAAAAGR_ GPPDFS(0.023)S(0.014)DEEREPT(0.951)PVLGS(0.012)GAAAAGR GPPDFS(-16.23)S(-18.25)DEEREPT(16.23)PVLGS(-19.05)GAAAAGR 0 0 1 1 P42166;P42167 P42166;P42167 P42167 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.594177246094 4 663.299977 2649.1708 36273.3970629476 2.0831 0.0013817 86373 57.291 86375 57.292 720.84168806807 62.935 1.076 62.935 62.586 63.662 0 163 36 6 0.688532233815907 0.00325824829198403 0.07145308759593 0.037929 1 14854 47.668 29.884 4 119620000 6940.9 5114.6 6231.6 5434.1 6249.4 8073.3 7863.7 6644.2 7219.6 8519.7 6565.2 4833.4 6318.9 5602.5 6363.1 7972.7 7909.4 6976.7 7150.9 8176.1 1 1 1 1 1 1 1 1 1 1 1763 582;581 1551 1633 1957 1957 935;4459 GPPDFSSDEEREPTPVLGSGAAAAGR 26 Phospho (STY) _GPPDFS(ph)SDEEREPTPVLGSGAAAAGR_ GPPDFS(0.991)S(0.009)DEEREPTPVLGSGAAAAGR GPPDFS(20.31)S(-20.31)DEEREPT(-107.42)PVLGS(-141.27)GAAAAGR 0 0 1 1 P42166;P42167 P42166;P42167 P42167 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 960.787780761719 3 884.064211 2649.1708 31787.886539357 1.2689 0.0011218 86405 76.387 86406 76.389 960.786096096298 65.945 1.7835 65.945 65.544 67.328 0 203 60 5 0.99812988072479 0.00807866292956946 0.0797435748749251 4.7907E-33 2 15448 302.41 279.62 4 77996000 12915 16706 14652 18875 20713 14624 21037 19549 20061 55517 12228 15794 14729 19179 20666 15014 21372 21091 19836 52728 2 2 2 2 2 2 2 2 2 2 1764 582;581 1551 1633 1958;1959 1958 935;4459 GPPDFSSDEEREPTPVLGSGAAAAGR 26 Phospho (STY) _GPPDFS(ph)SDEEREPTPVLGSGAAAAGR_ GPPDFS(0.688)S(0.311)DEEREPTPVLGSGAAAAGR GPPDFS(3.45)S(-3.45)DEEREPT(-35.01)PVLGS(-96.94)GAAAAGR 0 0 1 1 P42166;P42167 P42166;P42167 P42167 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.84130859375 4 663.299977 2649.1708 36878.7390112081 1.3458 0.00089269 86372 57.291 86374 57.292 720.842022513095 65.916 1.3187 65.916 65.573 66.891 0 110 44 4 0.808428346900697 0.00291232715505686 0.0468894443574601 2.2967E-06 1 15478 138.08 114.17 4 19709000 6748.3 4846.9 7065.9 5996.7 5295.2 6402.5 6631.8 5843 4901.8 7272.9 6386.8 4585.2 7077.5 6093.6 5495.4 6406.1 6639 6101.8 4910 6983.5 1 1 1 1 1 1 1 1 1 1 1765 582;581 1551 1633 1960 1960 935;4459 GPPQEEEEEEDEEEEATKEDAEAPGIR 27 Unmodified _GPPQEEEEEEDEEEEATKEDAEAPGIR_ 0 0 0 1 P51858 P51858 P51858 HDGF Hepatoma-derived growth factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.410034179688 4 761.325907 3041.27452 32503.762778008 1.6825 0.0012809 150500 114.58 150510 114.58 876.158481633204 58.235 0.4976 58.235 58.023 58.521 0 64 16 5 0.975451930025937 0.00213117041040344 0.016999674932501 1.6938E-18 1 13620 245.92 222.18 1 34862000 8207.1 8103.6 9840.5 7609.2 9117.3 10213 8658 7175.4 8726.3 6925.9 7772.1 7652.3 9805.2 7884.9 9288.5 10096 8837 7523.9 8607.4 6687.7 1 1 1 1 1 1 1 1 1 1 1766 684 1552 1634 1961 1961 GPPQSPVFEGVYNNSR 16 Phospho (STY) _GPPQS(ph)PVFEGVYNNSR_ GPPQS(1)PVFEGVYNNSR GPPQS(106.5)PVFEGVY(-106.5)NNS(-111.54)R 0 0 1 0 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.329162597656 3 609.940236 1826.79888 37715.4005455225 1.6335 0.00099636 125240 76.387 125240 76.388 686.661899450971 67.519 1.2952 67.519 67.005 68.3 0 176 43 5 0.778702416276917 0.00680156835273479 0.231780299010247 5.8793E-05 2 15807 122.13 111.27 3 66394000 18928 23859 19231 19596 18466 18820 19834 22446 26142 19640 17912 22515 19340 20368 18810 18981 20296 22966 25527 19013 2 2 2 2 2 2 2 2 2 2 1767 1576 1553 1635 1962;1963 1962 2893 GPPQSPVFEGVYNNSR 16 Phospho (STY) _GPPQS(ph)PVFEGVYNNSR_ GPPQS(1)PVFEGVYNNSR GPPQS(43.74)PVFEGVY(-44.2)NNS(-43.74)R 0 0 1 0 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1029.4921875 2 914.406715 1826.79888 30366.1962943215 1.6284 0.0014891 125310 114.58 125310 114.58 1029.4916061503 67.527 0.9158 67.527 67.119 68.035 0 114 30 5 0.793779135079505 0.00285498613865849 0.174719906855521 2.0121E-05 1 15834 135.43 115.13 3 34397000 12490 17269 12036 17573 9545.3 13654 8699.4 15089 17186 92398 11817 16315 12114 17961 9829.8 14053 9128.2 17864 16598 87353 1 1 1 1 1 1 1 1 1 1 1768 1576 1553 1635 1964 1964 2893 GPPSGSPPRQPPQFWDSQR 19 Phospho (STY) _GPPSGS(ph)PPRQPPQFWDSQR_ GPPS(0.01)GS(0.99)PPRQPPQFWDSQR GPPS(-19.97)GS(19.97)PPRQPPQFWDS(-83.4)QR 0 0 1 1 Q5VY43 Q5VY43 Q5VY43 PEAR1 Platelet endothelial aggregation receptor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.060546875 3 734.335648 2199.98512 34463.4575416261 1.8492 0.0013579 104020 76.388 104020 76.389 811.057799902425 62.848 1.0779 62.848 62.265 63.343 0 122 36 6 0.898284898328238 0.00529689453397692 0.0566681140800834 1.7309E-05 2 14732 129.37 111.58 3 42138000 19660 23449 18768 20846 58702 20331 60026 36994 22579 25669 18600 22137 19441 21555 57197 20659 60013 37236 23867 25027 2 2 2 2 2 2 2 2 2 2 1769 1213 1554 1636 1965;1966 1966 2131 GPPSPPAPVMHSPSR 15 Oxidation (M),2 Phospho (STY) _GPPS(ph)PPAPVM(ox)HS(ph)PSR_ GPPSPPAPVM(1)HSPSR GPPS(1)PPAPVMHS(0.735)PS(0.265)R GPPSPPAPVM(87.89)HSPSR GPPS(76.43)PPAPVMHS(4.43)PS(-4.43)R 0 1 2 0 Q13573 Q13573 Q13573 SNW1 SNW domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.288330078125 3 563.900046 1688.67831 39932.6137364254 1.4511 0.00081829 135460 76.388 135460 76.388 640.287278692125 40.033 1.488 40.033 39.141 40.629 0 139 50 4 0.904302920603182 0.00204837411418157 0.0223660293804196 0.0048141 1 9064 87.892 70.403 3 28579000 10393 10263 11989 10983 11026 13023 13063 11812 10804 3966.8 9840.2 9699.6 11972 11266 11273 12954 13137 12015 10756 4008.6 1 1 1 1 1 1 1 1 1 1 1770 967 1555 1637 1967 1967 128 1638;1639 GPPSPPAPVMHSPSR 15 Phospho (STY) _GPPS(ph)PPAPVMHSPSR_ GPPS(1)PPAPVMHSPSR GPPS(56.1)PPAPVMHS(-56.1)PS(-64.51)R 0 0 1 0 Q13573 Q13573 Q13573 SNW1 SNW domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.634033203125 3 531.912964 1592.71706 40252.8127943008 0.87408 0.00046493 143610 76.388 143610 76.388 608.302003054058 48.009 1.0457 48.009 47.373 48.418 -7.1054E-15 93 37 3 0.539075794463508 0.00332457966873217 0.0474419983301314 0.011347 1 11074 70.414 58.498 3 46782000 30031 20060 27775 23222 18851 32691 19221 25554 24509 5918.8 28409 18968 27989 23803 19667 32267 19692 26087 23958 6164.6 1 1 1 1 1 1 1 1 1 1 1771 967 1555 1638 1968 1968 1638;1639 GPPSPPAPVMHSPSR 15 2 Phospho (STY) _GPPS(ph)PPAPVMHS(ph)PSR_ GPPS(1)PPAPVMHS(0.638)PS(0.362)R GPPS(119.44)PPAPVMHS(2.45)PS(-2.45)R 0 0 2 0 Q13573 Q13573 Q13573 SNW1 SNW domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 634.956970214844 3 558.568407 1672.68339 38555.9288427336 1.9588 0.0010941 136760 76.387 136760 76.388 634.955851185134 49.545 1.7673 49.545 48.709 50.477 0 223 60 5 0.799508023820909 0.0150780226239128 0.395036524744753 5.4216E-06 2 11546 138 125.98 3 154810000 40729 43910 35550 46417 50223 43560 46306 51845 42871 11134 38521 41495 36267 47461 50041 43915 47230 52019 42446 11684 2 2 2 2 2 2 2 2 2 2 1772 967 1555 1639 1969;1970 1970 1638;1639 GPPSPPAPVMHSPSRK 16 2 Phospho (STY) _GPPS(ph)PPAPVMHS(ph)PSRK_ GPPS(1)PPAPVMHS(0.709)PS(0.291)RK GPPS(71.98)PPAPVMHS(3.86)PS(-3.86)RK 0 0 2 1 Q13573 Q13573 Q13573 SNW1 SNW domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.377807617188 3 601.266728 1800.77836 34585.4429865266 1.7932 0.0010782 254090 152.78 254090 152.78 754.376922592184 49.081 1.6779 49.081 48.217 49.895 0 167 57 5 0.974323471308065 0.00998433644060084 0.0748287382736683 0.00011387 1 11381 102.94 87.458 3 55150000 31089 34980 30331 30640 29116 33157 32831 35162 31454 7725.5 29415 33019 30577 31765 29670 33163 33203 35425 31094 8088.2 1 1 1 1 1 1 1 1 1 1 1773 967 1556 1640 1971 1971 1638;1639 GPQESPQK 8 Phospho (STY) _GPQES(ph)PQK_ GPQES(1)PQK GPQES(72.43)PQK 0 0 1 0 Q8N1F8 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 470.246459960938 3 317.470818 949.390626 NaN NaN NaN NaN NaN NaN NaN NaN 31.945 1 31.945 31.445 32.445 0 NaN NaN NaN 0.027858 1 7142 72.434 44.035 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1774 1454 1557 1641 1972 1972 2692 GPQPPTVSPIR 11 Phospho (STY) _GPQPPTVS(ph)PIR_ GPQPPTVS(1)PIR GPQPPT(-54.84)VS(54.84)PIR 0 0 1 0 P46087 P46087 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.390808105469 2 614.80792 1227.60129 36411.1151511665 1.9633 0.0012071 186370 114.58 186370 114.58 729.389671993913 53.71 1.1913 53.71 52.956 54.148 0 131 41 5 0.964630182074219 0.00696981775484881 0.106080544176379 6.2803E-10 1 12555 177.36 138.48 2 140980000 77367 72540 84013 65205 48577 80190 43224 67253 80634 9865.9 73234 68484 83770 67639 51348 79566 45280 68258 77975 10846 1 1 1 1 1 1 1 1 1 1 1775 606 1558 1642 1973 1973 998 GPRTPSPPPPIPEDIALGK 19 2 Phospho (STY) _GPRT(ph)PS(ph)PPPPIPEDIALGK_ GPRT(1)PS(1)PPPPIPEDIALGK GPRT(102.27)PS(102.27)PPPPIPEDIALGK 0 0 2 1 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.112121582031 3 700.337317 2097.99012 35410.1528625578 1.4775 0.0010348 218150 152.78 218150 152.78 853.44761876613 85.237 0.95441 85.237 84.721 85.676 0 65 32 3 0.818789218496071 0.00186486418891236 0.03896160033318 0.00018026 1 19885 102.27 79.613 1 8791600 6515.4 7173.8 7636.8 6941.2 6235.4 6826.4 5415.2 6140.4 7878.7 19227 6169.5 6775.5 7606.7 7139.4 6401.2 6875.2 5619.1 6765.2 7669.4 18247 1 1 1 1 1 1 1 1 1 1 1776 1183 1559 1643 1974 1974 2063;4600 GPRTPSPPPPIPEDIALGKK 20 2 Phospho (STY) _GPRT(ph)PS(ph)PPPPIPEDIALGKK_ GPRT(1)PS(1)PPPPIPEDIALGKK GPRT(44.56)PS(44.56)PPPPIPEDIALGKK 0 0 2 2 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.400634765625 4 557.528548 2226.08509 37607.9586875558 1.8657 0.0010402 308280 171.87 308280 171.87 729.65119488388 79.842 1.091 79.842 79.222 80.313 0 109 37 4 0.660296662779537 0.00110824087527535 0.0162246148581166 0.042498 1 18691 44.555 28.568 1 10754000 3774.6 5935.8 4595.5 5285.2 5120.9 4393.3 4955.1 5141.9 5243.3 14766 3574.8 5603.6 4586.3 5452.1 5163.6 4480.7 5059.7 5573.6 5161.4 14023 1 1 1 1 1 1 1 1 1 1 1777 1183 1560 1644 1975 1975 2063;4600 GPSLNPVLDYDHGSR 15 Phospho (STY) _GPSLNPVLDYDHGS(ph)R_ GPSLNPVLDYDHGS(1)R GPS(-83.57)LNPVLDY(-58.09)DHGS(58.09)R 0 0 1 0 P43243 P43243 P43243 MATR3 Matrin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.978759765625 3 569.589314 1705.74611 39158.1492719957 1.866 0.0010629 134110 76.388 134110 76.389 645.976548474178 68.559 0.90789 68.559 68.095 69.003 0 56 30 3 0.890107029960081 0.00102426174035231 0.00811534862787523 0.0027509 1 16107 94.201 78.999 3 7521800 6168.9 6138.3 7273 7361.3 5725.2 7038.2 4772.1 7177.2 6173.5 5460.5 5841.5 5805.6 7239.3 7478.5 5889.2 7081.2 4941.7 7358.4 6031.9 5307.8 1 1 1 1 1 1 1 1 1 1 1778 595 1561 1645 1976 1976 967 GPSPAPASSPK 11 2 Phospho (STY) _GPS(ph)PAPAS(ph)SPK_ GPS(1)PAPAS(0.685)S(0.315)PK GPS(49.27)PAPAS(3.38)S(-3.38)PK 0 0 2 0 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.391906738281 2 578.227787 1154.44102 34098.4122696273 1.2729 0.00073601 396320 229.16 396320 229.16 807.391747465363 37.091 0.34687 37.091 36.865 37.211 0 28 11 3 0.956451169181616 0.000725673554793716 0.0315580898225244 0.011652 1 8362 94.09 67.492 3 10945000 13146 14565 12530 13360 11293 12485 10818 13232 14981 3661 12437 13752 12637 13777 11531 12570 11149 13354 14606 3753.5 1 1 1 1 1 1 1 1 1 1 1779 1953 1562 1646 1977 1977 3552;3553;3554 GPSPAPASSPKR 12 2 Phospho (STY) _GPS(ph)PAPASS(ph)PKR_ GPS(1)PAPAS(0.009)S(0.991)PKR GPS(65.21)PAPAS(-20.3)S(20.3)PKR 0 0 2 1 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 885.443298339844 2 656.278342 1310.54213 32951.0023683706 2.5642 0.0016828 349190 229.16 349190 229.16 885.441293225222 31.044 0.44959 31.044 30.851 31.301 0 41 14 4 0.977577562851811 0.0012508976716172 0.0502384324428783 2.3463E-05 1 6927 132.39 99.869 3 16319000 11781 15465 11627 14023 8577.4 12160 10748 11919 15712 1556.1 11147 14601 11684 14457 8919.8 12272 10972 12011 15292 1741.1 1 1 1 1 1 1 1 1 1 1 1780 1953 1563 1647 1978 1978 3552;3553;3554 GPSPSLLNTISLDTMPK 17 Oxidation (M),Phospho (STY) _GPS(ph)PSLLNTISLDTM(ox)PK_ GPSPSLLNTISLDTM(1)PK GPS(0.969)PS(0.031)LLNTISLDTMPK GPSPSLLNTISLDTM(190.57)PK GPS(14.92)PS(-14.92)LLNT(-74.69)IS(-137.01)LDT(-178.53)MPK 0 1 1 0 O60307 O60307 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.745300292969 3 622.968804 1865.88458 NaN NaN NaN NaN NaN NaN NaN NaN 99.076 1 99.076 98.576 99.576 0 NaN NaN NaN 1.1949E-13 1 22994 190.57 168.04 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1781 141 1564 1648 1979 1979 15 239 GPSPSPVGSPASVAQSR 17 Phospho (STY) _GPS(ph)PSPVGSPASVAQSR_ GPS(0.727)PS(0.273)PVGSPASVAQSR GPS(4.26)PS(-4.26)PVGS(-107.67)PAS(-127.45)VAQS(-137.04)R 0 0 1 0 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.985473632813 3 554.261198 1659.76176 39439.7274810834 1.2305 0.00068203 137820 76.388 137820 76.388 630.648912545057 47.78 1.0196 47.78 47.456 48.475 7.1054E-15 109 34 5 0.967715838215595 0.00378959738708845 0.0277496788584823 3.7682E-07 1 11030 142.74 117.89 5 101680000 15530 15137 13778 16413 14665 13784 15641 13644 15126 4767.8 14689 14306 13987 16733 14843 13941 15860 13835 14946 4805.2 1 1 1 1 1 1 1 1 1 1 1782 57 1565 1649 1980 1980 84 GPSPVSLGNQDTLPVAVALTESVNAYFK 28 Phospho (STY) _GPS(ph)PVSLGNQDTLPVAVALTESVNAYFK_ GPS(0.785)PVS(0.213)LGNQDT(0.001)LPVAVALTESVNAYFK GPS(5.66)PVS(-5.66)LGNQDT(-28.04)LPVAVALT(-52.81)ES(-62.56)VNAY(-72.7)FK 0 0 1 0 Q0JRZ9 Q0JRZ9 Q0JRZ9 FCHO2 F-BAR domain only protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.953063964844 4 739.369131 2953.44742 35070.7624020287 1.5571 0.0011513 154970 114.58 154970 114.58 853.950319493648 103.36 0.28294 103.36 103.15 103.43 -1.4211E-14 26 9 5 0.628185393749864 0.000708441011512094 0.016179071409147 0.0093376 1 24348 74.905 64.198 6 22187000 3776.3 4269.2 3727.1 5029.9 6587.5 3811.7 5854.5 4780.6 5001.7 21783 3573.1 4037.3 3789.4 5098.5 6505 3928.2 5971.3 5414.1 4971.4 20622 1 1 1 1 1 1 1 1 1 1 1783 897 1566 1650 1981 1981 1479 GPSPVSLGNQDTLPVAVALTESVNAYFK 28 Phospho (STY) _GPS(ph)PVSLGNQDTLPVAVALTESVNAYFK_ GPS(0.973)PVS(0.027)LGNQDTLPVAVALTESVNAYFK GPS(15.59)PVS(-15.59)LGNQDT(-99.73)LPVAVALT(-214.99)ES(-239.6)VNAY(-264.36)FK 0 0 1 0 Q0JRZ9 Q0JRZ9 Q0JRZ9 FCHO2 F-BAR domain only protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1138.60144042969 3 985.48975 2953.44742 29786.2045798687 1.0253 0.0010104 155020 152.78 155030 152.78 1138.59941076246 103.36 0.16988 103.36 103.26 103.43 0 22 5 5 0.988983479585786 0.00711710160023669 0.137543541081341 1.8965E-25 1 24357 269.74 246.34 6 44103000 5304.5 9998.2 6183.5 10019 10947 6020.7 13389 10993 11406 35215 5022.7 9445.1 6238.8 10221 10861 6342 13457 11895 11339 33414 1 1 1 1 1 1 1 1 1 1 1784 897 1566 1650 1982 1982 1479 GPSQEEEDNHSDEEDRASEPK 21 Phospho (STY) _GPSQEEEDNHS(ph)DEEDRASEPK_ GPSQEEEDNHS(1)DEEDRASEPK GPS(-154.48)QEEEDNHS(79.4)DEEDRAS(-79.4)EPK 0 0 1 1 Q86VM9 Q86VM9 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.57275390625 4 616.989767 2463.92996 36522.6668945051 2.1677 0.0013375 185710 114.58 185710 114.58 731.822065577412 30.24 0.53562 30.24 30.045 30.581 0 34 17 3 0.971789698434363 0.00080861626695972 0.0219231322161563 4.646E-23 1 6761 257.01 244.88 3 6848400 6463 6833.9 7510.1 6757.1 4520.4 6592.8 4213.2 5982.3 6187.6 1963.7 6119.6 6455.3 7464.9 6940 4761.3 6611.7 4357.5 6083.5 6021.5 1987.5 1 1 1 1 1 1 1 1 1 1 1785 1380 1567 1651 1983 1983 2496 GPSTPKSPGASNFSTLPK 18 Phospho (STY) _GPSTPKSPGAS(ph)NFSTLPK_ GPS(0.008)T(0.063)PKS(0.441)PGAS(0.488)NFSTLPK GPS(-18.01)T(-8.87)PKS(-0.44)PGAS(0.44)NFS(-39.91)T(-61.66)LPK 0 0 1 1 Q9Y4E8 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.796630859375 3 618.299541 1851.87679 33872.0987031687 1.6473 0.0010185 370640 229.16 370640 229.16 847.796930734598 64.553 0.63889 64.553 64.24 64.879 0 69 21 4 0.994033167900954 0.00582696656019815 0.0820653368670681 6.9417E-11 1 15133 183.86 147.28 6 96790000 24120 42860 25056 44797 12115 24344 11664 30108 45695 13796 22827 40500 25017 45549 13085 25412 12826 30392 43644 13687 1 1 1 1 1 1 1 1 1 1 1786 2278 1568 1652 1984 1984 4213;4214 GPSWDPFR 8 Phospho (STY) _GPS(ph)WDPFR_ GPS(1)WDPFR GPS(94.69)WDPFR 0 0 1 0 P04792 P04792 P04792 HSPB1 Heat shock protein beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.796142578125 2 521.213124 1040.4117 39493.0322114387 1.4941 0.00077872 219840 114.58 219840 114.58 635.794687744845 88.293 1.2332 88.293 87.908 89.141 0 125 42 4 0.991871192295833 0.00253550997277913 0.0959971880482697 0.0052404 1 20545 94.692 72.699 1 90401000 12847 13361 12070 12373 4577.6 11927 4544.3 10254 13874 7955.5 12154 12616 12107 12757 5096.1 11969 4882.8 10590 13294 7728.4 1 1 1 1 1 1 1 1 1 1 1787 294 1569 1653 1985 1985 485 GPTSTSIDNIDGTPVRDER 19 Phospho (STY) _GPTSTSIDNIDGT(ph)PVRDER_ GPTSTSIDNIDGT(1)PVRDER GPT(-98.42)S(-90.35)T(-81.29)S(-64.31)IDNIDGT(64.31)PVRDER 0 0 1 1 Q5VT52 Q5VT52 Q5VT52 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.710021972656 3 703.986462 2108.93756 35141.5374282468 1.3024 0.00091685 108510 76.388 108510 76.389 780.374246376131 50.962 0.63676 50.962 50.675 51.312 0 55 21 4 0.988433537132302 0.00425742723672769 0.0186293417300152 6.8891E-11 1 11855 198.6 163.88 5 32657000 19125 21148 20144 21935 17879 21252 16444 19827 23452 15464 18101 19982 20195 22463 18264 21344 16999 20409 22843 15020 1 1 1 1 1 1 1 1 1 1 1788 1201 1570 1654 1986 1986 4609 GPVSGSPDSMNASR 14 Phospho (STY) _GPVSGS(ph)PDSMNASR_ GPVS(0.002)GS(0.998)PDSMNASR GPVS(-27.92)GS(27.92)PDS(-58.98)MNAS(-118)R 0 0 1 0 O14920 O14920 O14920 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.874633789063 2 721.292505 1440.57046 34686.7550363123 1.5641 0.0011282 158850 114.58 158860 114.58 835.872620640229 39.479 0.40375 39.479 39.255 39.658 0 37 13 4 0.97776508597262 0.00139209137734373 0.0193959636507231 8.592E-23 1 8947 271.47 235.7 4 18904000 18779 10567 18111 8783.9 11713 19995 11603 14998 12145 6940.9 17767 9971.8 18197 9307.9 12263 19492 11831 15447 11960 6882.8 1 1 1 1 1 1 1 1 1 1 1789 70 1571 1655 1987 1987 116 GPVSPSVSFQPLAR 14 Phospho (STY) _GPVS(ph)PSVSFQPLAR_ GPVS(0.886)PS(0.114)VSFQPLAR GPVS(8.9)PS(-8.9)VS(-45.05)FQPLAR 0 0 1 0 Q7Z434 Q7Z434 Q7Z434 MAVS Mitochondrial antiviral-signaling protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.960083007813 2 761.376698 1520.73884 33475.4401803531 1.7709 0.0013483 150490 114.58 150500 114.58 875.958345876102 78.418 0.54623 78.418 78.147 78.693 0 70 18 5 0.59894044103743 0.00256686846803891 0.126097083162898 1.1691E-06 1 18348 146.48 125.74 3 69766000 9532.2 15782 10457 17116 17007 9245.2 17172 16467 16644 51362 9023.4 14916 10556 17367 16874 9805.6 17457 17785 16445 48745 1 1 1 1 1 1 1 1 1 1 1790 1337 1572 1656 1988 1988 2412 GQESFKK 7 Phospho (STY) _GQES(ph)FKK_ GQES(1)FKK GQES(92.61)FKK 0 0 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.967468261719 3 301.803909 902.389898 42719.9929437763 1.6054 0.00048451 759310 229.16 759310 229.16 530.967042774868 44.224 1.3073 44.224 43.815 45.122 0 139 44 5 0.961036512864716 0.0218799527976673 0.408029466589055 0.0051771 1 10115 92.611 48.293 1 603650000 89197 131920 97719 114040 120900 82129 137740 116230 122230 5340.6 84435 124520 98223 117670 121550 84184 138970 115430 121260 7718.8 1 1 1 1 1 1 1 1 1 1 1791 315 1573 1657 1989 1989 519 GQESFKKQEK 10 Phospho (STY) _GQES(ph)FKKQEK_ GQES(1)FKKQEK GQES(112.24)FKKQEK 0 0 1 2 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.75439453125 3 430.20262 1287.58603 36490.0778647717 2.8116 0.0012096 710250 305.55 710250 305.55 735.753198380126 41.744 0.65637 41.744 41.424 42.08 0 76 22 4 0.86977141789767 0.00580014440679999 0.069276090543025 0.00030749 1 9494 112.24 83.69 1 84589000 42461 45515 43595 44534 59178 42575 65273 52263 48932 4472.8 40183 42991 44035 45755 59204 42892 65703 52183 48974 5421.3 1 1 1 1 1 1 1 1 1 1 1792 315 1574 1658 1990 1990 519 GQESSSDQEQVDVESIDFSK 20 Phospho (STY) _GQESSS(ph)DQEQVDVESIDFSK_ GQES(0.027)S(0.186)S(0.787)DQEQVDVESIDFSK GQES(-14.71)S(-6.26)S(6.26)DQEQVDVES(-129.76)IDFS(-152.31)K 0 0 1 0 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 918.43310546875 3 765.316313 2292.92711 32669.3536546799 2.0169 0.0015436 199620 152.78 199630 152.78 918.426171246099 77.305 1.155 77.305 76.824 77.979 0 134 39 4 0.970027119897207 0.00290480267906934 0.0115807993058758 1.1649E-08 1 18059 173.36 158.27 5 24709000 6763.1 5373.4 6231.2 4967.2 7129.9 5503.5 6645.7 8152.2 5026.9 53511 6397.6 5073.8 6315.1 5133.6 7174 5626.5 6743.7 9687 5028.7 50576 1 1 1 1 1 1 1 1 1 1 1793 1699 1575 1659 1991 1991 3123 GQGESDPLDHEPAVSPLLPR 20 Phospho (STY) _GQGESDPLDHEPAVS(ph)PLLPR_ GQGESDPLDHEPAVS(1)PLLPR GQGES(-107.31)DPLDHEPAVS(107.31)PLLPR 0 0 1 0 P00519 P00519 P00519 ABL1 Tyrosine-protein kinase ABL1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.734802246094 3 732.010719 2193.01033 34350.8946082411 1.7352 0.0012702 104350 76.388 104360 76.39 808.732671312738 76.694 1.0339 76.694 76.276 77.31 1.4211E-14 116 35 6 0.977692602651534 0.00300205665335742 0.0619369731033914 1.4325E-08 1 17945 172.74 154.28 2 32080000 4587.8 7803 4743.7 8852.1 4148.2 5583 4369 6758.8 8113.7 10679 4341.8 7377.2 4760.8 8972.5 4251.5 5776.9 4539.2 7055.8 7847 10212 1 1 1 1 1 1 1 1 1 1 1794 281 1576 1660 1992 1992 465 GQGPRSPHK 9 Phospho (STY) _GQGPRS(ph)PHK_ GQGPRS(1)PHK GQGPRS(77.26)PHK 0 0 1 1 Q86U38 Q86U38 Q86U38 NOP9 Nucleolar protein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 501.272918701172 3 348.49759 1042.47094 44058.3450574227 1.0866 0.00037866 438380 152.78 438380 152.78 501.273073128346 23.919 0.61096 23.919 23.7 24.311 0 43 20 3 0.964595787383592 0.0337516495375831 0.342559850731987 0.0074999 1 5352 77.26 45.252 1 79828000 38013 23168 38210 24549 15542 38576 16520 26210 25782 2757.2 35970 21894 38189 25348 17133 37891 17023 26853 25047 3202.8 1 1 1 1 1 1 1 1 1 1 1795 1363 1577 1661 1993 1993 2473 GQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYER 37 Oxidation (M),Phospho (STY) _GQPGNAYDGAGQPSAAYLSM(ox)SQGAVANANST(ph)PPPYER_ GQPGNAYDGAGQPSAAYLSM(1)SQGAVANANSTPPPYER GQPGNAYDGAGQPSAAYLSMSQGAVANANS(0.347)T(0.653)PPPYER GQPGNAYDGAGQPSAAYLSM(161.3)SQGAVANANSTPPPYER GQPGNAY(-121.89)DGAGQPS(-69.95)AAY(-67.33)LS(-67.83)MS(-61.64)QGAVANANS(-2.75)T(2.75)PPPY(-55.43)ER 0 1 1 0 Q96PK6 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1006.21014404297 4 948.416438 3789.63665 31130.2385715189 1.5359 0.0014566 60407 57.291 60408 57.292 1006.20846498181 66.527 0.85992 66.527 66.23 67.09 0 163 29 8 0.987930688577116 0.012026671656342 0.268489669625321 1.1017E-08 2 15604 161.3 139.6 8 84263000 3192.2 2699.1 2677.3 4096.5 3128.5 4202.5 4346.2 4936.6 5174.3 36793 3018.7 2557.7 2733.3 4122.6 3166.1 4286.1 4388.3 6032 5070.3 34760 2 2 2 2 2 2 2 2 2 2 1796 1723 1578 1662 1994;1995 1995 202 4733 GQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYER 37 Phospho (STY) _GQPGNAYDGAGQPSAAYLSMSQGAVANANST(ph)PPPYER_ GQPGNAYDGAGQPSAAYLSMSQGAVANANS(0.234)T(0.765)PPPYER GQPGNAY(-92.6)DGAGQPS(-43.33)AAY(-44.74)LS(-44.28)MS(-38.26)QGAVANANS(-5.14)T(5.14)PPPY(-40.65)ER 0 0 1 0 Q96PK6 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1002.20977783203 4 944.417709 3773.64173 30968.9091046301 1.2833 0.0012119 60663 57.291 60664 57.292 1002.20988601544 75.836 1.2457 75.836 75.431 76.676 -1.4211E-14 256 42 8 0.96063628173104 0.00288376416515302 0.0689197848252976 1.3554E-05 3 17936 122.97 116.32 8 260780000 6564 6289.6 7025.7 6409 6383.9 7564.9 7061.3 7727.6 6847.2 45607 6213 5942.2 7041.4 6591.9 6525.7 7619 7149.4 9119.3 6765.2 43124 3 3 3 3 3 3 3 3 3 3 1797 1723 1578 1663 1996;1997;1998 1997 4733 GQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYER 37 Phospho (STY) _GQPGNAYDGAGQPSAAYLSMSQGAVANANST(ph)PPPYER_ GQPGNAYDGAGQPSAAYLSMSQGAVANANS(0.107)T(0.893)PPPYER GQPGNAY(-154.45)DGAGQPS(-112.78)AAY(-101.73)LS(-80.28)MS(-67.66)QGAVANANS(-9.19)T(9.19)PPPY(-93.36)ER 0 0 1 0 Q96PK6 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1335.94519042969 3 1258.88785 3773.64173 27094.3860599724 1.2658 0.0015934 60678 76.387 60680 76.389 1335.6097474454 75.89 0.92739 75.89 75.545 76.472 1.4211E-14 177 31 7 0.987067851658892 0.0037088331113161 0.0454931191332582 5.7037E-13 1 17761 205.69 191.32 8 91687000 1655.7 1527.2 224.13 504.21 388.53 978.71 1569 1141 1177.3 16168 1561.4 1436.9 312.23 587.77 400.9 992.32 1529.7 1625.4 1178.3 15250 1 1 1 1 1 1 1 1 1 1 1798 1723 1578 1663 1999 1999 4733 GQSPNKR 7 Phospho (STY) _GQS(ph)PNKR_ GQS(1)PNKR GQS(56.55)PNKR 0 0 1 1 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 442.242858886719 3 289.46752 865.38073 46408.6423005531 1.4964 0.00043316 527780 152.77 527780 152.78 442.242518777456 22.645 0.34557 22.645 22.517 22.863 0 31 11 3 0.856755595646938 0.00382283908386871 0.026509519500267 0.027186 1 5084 56.548 18.992 1 14407000 10659 10654 9744.8 11134 7815.9 9648.7 9949.9 9907.4 10750 10189 10082 10067 9845.4 11379 8076.4 9760.1 10048 10235 10573 9823.9 1 1 1 1 1 1 1 1 1 1 1799 1353 1579 1664 2000 2000 2453 GQSQTSPDHR 10 Phospho (STY) _GQSQTS(ph)PDHR_ GQS(0.001)QT(0.15)S(0.849)PDHR GQS(-28.62)QT(-7.53)S(7.53)PDHR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 474.551391601563 3 398.162936 1191.46698 46547.0974124536 0.92033 0.00036644 191850 76.388 191850 76.388 474.550594663604 18.461 0.20597 18.461 18.377 18.583 0 13 8 2 0.959127474027429 0.00153711261434225 0.0125529923972052 0.020932 1 4234 56.951 40.419 3 377100 283.18 0 0 0 278.72 219.98 0 0 339.42 1376.6 266.9 0 0 0 262.77 210.51 0 0 320.51 1296.2 1 0 0 0 1 1 0 0 1 1 1800 2226 1580 1665 2001 2001 4049 GQSSPPPAPPICLR 14 Phospho (STY) _GQSS(ph)PPPAPPICLR_ GQS(0.433)S(0.567)PPPAPPICLR GQS(-1.16)S(1.16)PPPAPPICLR 0 0 1 0 O43379 O43379 O43379 WDR62 WD repeat-containing protein 62 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.96875 3 519.581214 1555.72181 41704.268453348 1.3996 0.0007272 147020 76.387 147020 76.388 595.968829583977 64.961 0.97569 64.961 64.508 65.483 1.4211E-14 108 33 5 0.737529863779115 0.00130747951648153 0.0147474568677852 0.0030096 1 15229 93.427 70.624 2 14765000 5596.2 5686 5309.2 6679 5996 4951.5 6278.5 5668 8068.3 3608.8 5294.3 5377 5371.5 6769.4 6049.9 5056.1 6426.4 5766.4 7885.1 3529.3 1 1 1 1 1 1 1 1 1 1 1801 108 1581 1666 2002 2002 181;182 GRDSPYQSR 9 Phospho (STY) _GRDS(ph)PYQSR_ GRDS(1)PYQSR GRDS(38.29)PY(-67.67)QS(-38.29)R 0 0 1 1 Q13242 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.823059082031 2 573.240402 1144.46625 37629.0804412091 2.1369 0.0012249 199880 114.58 199890 114.58 687.821880902408 22.684 0.77767 22.684 22.488 23.266 0 69 26 4 0.988696135116881 0.00367158033695164 0.0283303057881099 6.6092E-06 1 5089 145.41 124.5 3 27495000 4613.9 4901.7 5222.5 4757.6 3608.3 5913.8 5216.8 4882.9 4480.6 11559 4368.2 4629.6 5207.1 4912.3 3779.1 5884.9 5212.9 5286.2 4452.3 10997 1 1 1 1 1 1 1 1 1 1 1802 938 1582 1667 2003 2003 1545 GRECSPTSSLER 12 Phospho (STY) _GRECS(ph)PTSSLER_ GRECS(0.748)PT(0.234)S(0.008)S(0.01)LER GRECS(5.04)PT(-5.04)S(-19.48)S(-18.83)LER 0 0 1 1 Q9P1Y6 Q9P1Y6 Q9P1Y6 PHRF1 PHD and RING finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.891967773438 2 729.80578 1457.59701 34083.1294164065 1.6625 0.0012133 157000 114.58 157010 114.58 844.388065195182 32.042 0.44662 32.042 31.791 32.237 0 35 14 3 0.849430565667708 0.000891729392686128 0.0599458402095568 0.030488 1 7155 58.487 32.368 4 11275000 7546.8 6368.3 9210.6 7248 5819 8491.4 4797.6 7007.1 7711.2 2539.4 7147.5 6021 9135.4 7408.3 6093.7 8442 5012.3 7162.7 7485 2553.4 1 1 1 1 1 1 1 1 1 1 1803 2096 1583 1668 2004 2004 3786 GREETVAEDVCIDLTCDSGSQAVPSPATR 29 Phospho (STY) _GREETVAEDVCIDLTCDSGSQAVPS(ph)PATR_ GREETVAEDVCIDLTCDSGSQAVPS(0.935)PAT(0.065)R GREET(-164.57)VAEDVCIDLT(-125.78)CDS(-102.17)GS(-73.05)QAVPS(11.58)PAT(-11.58)R 0 0 1 1 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 858.39306640625 4 800.852248 3199.37989 34193.9366457397 1.3173 0.0010549 71537 57.291 71539 57.292 858.393367039495 75.757 0.61089 75.757 75.545 76.156 0 34 20 2 0.600265114907389 0.000827604702052362 0.0129284474458977 9.021E-12 1 17763 189.9 169.75 6 14832000 2896.8 3944.8 2692.9 3446.8 3540 3039.1 3455.2 3356.1 2860.6 13576 2740.3 3723.6 2733.5 3562.9 3540.6 3094 3504.9 3763.2 2847.7 12861 1 1 1 1 1 1 1 1 1 1 1804 911 1584 1669 2005 2005 1499 GREGSLTGTK 10 Phospho (STY) _GREGS(ph)LTGTK_ GREGS(0.998)LT(0.002)GTK GREGS(27.67)LT(-27.67)GT(-49.18)K 0 0 1 1 Q9Y6D6 Q9Y6D6 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 515.280395507813 3 362.504411 1084.4914 42659.4555433964 0.24587 8.9128E-05 421440 152.78 421440 152.78 515.279761957239 34.865 0.37386 34.865 34.662 35.036 0 29 12 3 0.892391999147692 0.00312734816146422 0.0581205506439935 0.004567 1 7826 87.082 54.324 3 27313000 29748 12848 28962 13954 22726 29805 25993 23143 13824 2998.4 28147 12144 29138 14515 23465 29090 25968 23563 14156 3359 1 1 1 1 1 1 1 1 1 1 1805 2311 1585 1670 2006 2006 4263 GRLGSTGAK 9 Phospho (STY) _GRLGS(ph)TGAK_ GRLGS(0.874)T(0.126)GAK GRLGS(8.4)T(-8.4)GAK 0 0 1 1 Q01826 Q01826 Q01826 SATB1 DNA-binding protein SATB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 462.261657714844 3 309.486691 925.438245 46369.9769626804 -0.47187 -0.00014604 493640 152.78 493640 152.78 462.262313692298 34.607 0.52124 34.607 34.282 34.803 0 38 17 3 0.98335250689507 0.00447508344993825 0.0254380900186683 0.0061995 1 7766 81.676 32.376 2 54675000 83842 8477 80294 9965.9 9943.5 86111 13761 33829 9476.2 2295.9 79323 8016.4 80202 11365 14294 82263 13707 36028 9531.9 2944.7 1 1 1 1 1 1 1 1 1 1 1806 844 1586 1671 2007 2007 1361 GRLPNNSSRPSTPTINVLESK 21 Phospho (STY) _GRLPNNSSRPS(ph)TPTINVLESK_ GRLPNNS(0.01)S(0.01)RPS(0.599)T(0.38)PTINVLESK GRLPNNS(-17.56)S(-17.56)RPS(1.97)T(-1.97)PT(-36.41)INVLES(-137.78)K 0 0 1 2 Q15910 Q15910 Q15910 EZH2 Histone-lysine N-methyltransferase EZH2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.384887695313 4 587.549598 2346.16929 37511.4373699857 1.9313 0.0011347 195020 114.58 195020 114.58 702.38225612482 63.662 0.6924 63.662 63.314 64.007 0 96 23 6 0.932193406599786 0.00575699040025229 0.0486881520564356 2.2051E-11 1 14915 185.28 141.98 6 58260000 8898.8 9017.5 9187.1 9392.6 10158 9202.5 9209.7 10240 10005 3569.8 8421.6 8520.7 9244.4 9618 10239 9252.4 9442 10339 9838.5 3598.4 1 1 1 1 1 1 1 1 1 1 1807 1098 1587 1672 2008 2008 1900;1901;1902;4581 GRLPNNSSRPSTPTINVLESK 21 Phospho (STY) _GRLPNNS(ph)SRPSTPTINVLESK_ GRLPNNS(0.498)S(0.498)RPS(0.002)T(0.002)PTINVLESK GRLPNNS(0)S(0)RPS(-24.63)T(-24.63)PT(-41.57)INVLES(-145.48)K 0 0 1 2 Q15910 Q15910 Q15910 EZH2 Histone-lysine N-methyltransferase EZH2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.382080078125 4 587.549598 2346.16929 37716.0297524254 1.7939 0.001054 195010 114.58 195010 114.58 702.3800134336 66.646 0.83619 66.646 66.432 67.269 0 53 28 3 0.698332064844038 0.0022574992175452 0.0368778687655282 5.5174E-08 1 15648 158.94 92.691 6 17577000 6598.9 6807.1 7321.5 6930.4 7853.1 7453.6 8179.2 7761.7 7512.4 5002.1 6246.9 6431.1 7337.9 7116.8 7942 7461 8291.8 7924.4 7440.8 4889.7 1 1 1 1 1 1 1 1 1 1 1808 1098 1587 1672 2009 2009 1900;1901;1902;4581 GRLPNNSSRPSTPTINVLESK 21 2 Phospho (STY) _GRLPNNSS(ph)RPST(ph)PTINVLESK_ GRLPNNS(0.332)S(0.668)RPS(0.003)T(0.773)PT(0.224)INVLESK GRLPNNS(-4.43)S(4.43)RPS(-24.23)T(6.55)PT(-6.55)INVLES(-118.99)K 0 0 2 2 Q15910 Q15910 Q15910 EZH2 Histone-lysine N-methyltransferase EZH2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.374938964844 4 607.541181 2426.13562 36800.6414607271 1.9825 0.0012045 188600 114.58 188600 114.58 722.373034615627 68.623 0.73074 68.623 68.272 69.003 0 99 24 5 0.922106735767121 0.00919899892394446 0.136100529315263 2.4066E-11 1 16080 181.03 145.33 15 60060000 15046 10072 14177 9806.1 14062 14515 15098 13384 10851 5275.1 14234 9513.2 14326 10160 14288 14334 15203 13628 10887 5276.9 1 1 1 1 1 1 1 1 1 1 1809 1098 1587 1673 2010 2010 1900;1901;1902;4581 GRLSPVPVPR 10 Phospho (STY) _GRLS(ph)PVPVPR_ GRLS(1)PVPVPR GRLS(94.51)PVPVPR 0 0 1 1 Q9UKM9 Q9UKM9 Q9UKM9 RALY RNA-binding protein Raly MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 462.931640625 3 386.544541 1156.61179 45878.7994069853 -0.33098 -0.00012794 197620 76.388 197620 76.388 462.932955522582 52.104 1.0952 52.104 51.747 52.842 0 147 37 6 0.949186934433404 0.00536338802214867 0.0191962040124179 0.0023291 1 12066 94.507 70.758 1 1805000000 13905 17594 13735 17113 18432 13095 19464 16420 17575 1377.9 13157 16618 13899 17536 18440 13350 19712 16384 17421 1677.5 1 1 1 1 1 1 1 1 1 1 1810 2177 1588 1674 2011 2011 3926 GRPGSGTSGVDSLSNFIESVK 21 Phospho (STY) _GRPGS(ph)GTSGVDSLSNFIESVK_ GRPGS(0.651)GT(0.175)S(0.175)GVDSLSNFIESVK GRPGS(5.71)GT(-5.71)S(-5.71)GVDS(-37.79)LS(-58.6)NFIES(-150.94)VK 0 0 1 1 Q8IXT5 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 878.454345703125 3 725.342357 2173.00524 35046.4834199092 1.7987 0.0013047 210630 152.78 210630 152.78 878.453590435796 99.679 0.14154 99.679 99.609 99.75 0 9 4 3 0.571345446048672 0.000560557908902604 0.0139015188269304 1.9287E-11 1 23190 188.38 158.99 6 28748000 12029 20052 13519 19397 15134 12318 15148 16809 22884 41221 11388 18939 13547 19843 15270 12797 15631 17928 22251 39204 1 1 1 1 1 1 1 1 1 1 1811 1429 1589 1675 2012 2012 2606 GRPSKTPSPSQPK 13 2 Phospho (STY) _GRPSKT(ph)PS(ph)PSQPK_ GRPS(0.402)KT(0.589)PS(0.712)PS(0.297)QPK GRPS(-1.74)KT(1.74)PS(3.99)PS(-3.99)QPK 0 0 2 2 Q9NTI5 Q9NTI5 Q9NTI5 PDS5B Sister chromatid cohesion protein PDS5 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.060913085938 3 509.563651 1525.66912 37697.0609435184 2.3216 0.001183 449720 229.16 449730 229.16 738.726719177371 32.595 1.0801 32.595 32.148 33.228 0 82 36 3 0.965679065120695 0.00199967105105408 0.0124353865618956 0.025866 1 7262 67.685 46.732 6 19421000 20674 10826 20433 10862 13450 22662 12134 14247 10670 3053.5 19562 10227 20500 11340 14042 22089 12374 14709 10590 3204.9 1 1 1 1 1 1 1 1 1 1 1812 2031 1590 1676 2013 2013 3692;4782 GRRSPILLPK 10 Phospho (STY) _GRRS(ph)PILLPK_ GRRS(1)PILLPK GRRS(66.18)PILLPK 0 0 1 2 Q8TD16 Q8TD16 Q8TD16 BICD2 Protein bicaudal D homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.011474609375 3 406.235707 1215.68529 42116.4688832711 1.3799 0.00056057 376080 152.78 376080 152.78 559.011033644904 53.417 0.8561 53.417 53.118 53.974 0 95 28 5 0.672073775625239 0.00651545708706611 0.0923166399311242 0.017663 1 12426 66.178 33.231 1 79427000 59355 56974 62801 59512 68396 54343 74123 64132 57140 2419.7 56178 53836 63119 60867 69143 54829 74711 64023 57100 3762.7 1 1 1 1 1 1 1 1 1 1 1813 1545 1591 1677 2014 2014 2836 GRSFAGNLNTYK 12 Phospho (STY) _GRS(ph)FAGNLNTYK_ GRS(1)FAGNLNTYK GRS(83.81)FAGNLNT(-83.81)Y(-98.39)K 0 0 1 1 Q01813 Q01813 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.660766601563 3 469.885403 1406.63438 39432.6461091517 1.4876 0.000699 325130 152.77 325130 152.78 622.660181078416 59.601 0.42734 59.601 59.365 59.792 0 25 14 2 0.948360411181342 0.00070681781883961 0.00543024829339636 9.3505E-05 1 13984 115.53 80.64 3 16171000 12104 7700.5 13839 7721.4 7550 14111 7285.1 9353.8 7212.5 4206.8 11460 7274.5 13758 8029.5 8029.3 13807 7426.3 9693.7 7119.7 4177.7 1 1 1 1 1 1 1 1 1 1 1814 843 1592 1678 2015 2015 1360 GRSIDQDYER 10 Phospho (STY) _GRS(ph)IDQDYER_ GRS(1)IDQDYER GRS(83.49)IDQDY(-83.49)ER 0 0 1 1 Q9UDY2 Q9UDY2 Q9UDY2 TJP2 Tight junction protein ZO-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 516.573547363281 3 440.185629 1317.53506 44263.0514527171 0.66282 0.00029176 173530 76.387 173540 76.388 516.57349416796 33.172 0.43178 33.172 32.852 33.284 0 39 14 4 0.982853416412642 0.00177527909830619 0.0149769699383918 0.00016903 1 7432 115.09 89.374 2 15448000 10309 10283 10452 11413 7894.2 0 0 10498 10301 2591.6 9755.4 9720 10470 11466 8060.2 0 0 10202 9727.1 2683.3 1 1 1 1 1 0 0 1 1 1 1815 2134 1593 1679 2016 2016 3838 GRSTRVPVASVLI 13 Phospho (STY) _GRS(ph)TRVPVASVLI_ GRS(0.598)T(0.396)RVPVAS(0.006)VLI GRS(1.78)T(-1.78)RVPVAS(-20.13)VLI 0 0 1 2 Q9H2V7 Q9H2V7 Q9H2V7 SPNS1 Protein spinster homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 555.319946289063 3 478.932464 1433.77556 43092.7718405353 1.4729 0.00070543 159490 76.387 159500 76.388 555.319577207813 78.147 0.45081 78.147 77.923 78.374 0 35 15 3 0.627093186788375 0.000644485493529391 0.0159034059406076 0.029718 1 18332 60.246 42.92 3 5393800 3984.1 4526.4 4347.3 4242.4 7408.5 4391.4 5478.9 4605.2 4449.2 2898.7 3771.3 4274.3 4390.4 4375.6 7309.1 4403.2 5641.5 4698.4 4433.7 2836.1 1 1 1 1 1 1 1 1 1 1 1816 1924 1594 1680 2017 2017 3491 GSALGDLAPSRPPSFSPCPAEDLFPGHR 28 Phospho (STY) _GSALGDLAPSRPPSFS(ph)PCPAEDLFPGHR_ GSALGDLAPS(0.036)RPPS(0.103)FS(0.86)PCPAEDLFPGHR GS(-75.09)ALGDLAPS(-13.76)RPPS(-9.2)FS(9.2)PCPAEDLFPGHR 0 0 1 1 O75427 O75427 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 812.143798828125 4 754.600928 3014.37461 35105.7618490593 1.9165 0.0014462 75921 57.29 75923 57.291 812.391726025884 90.356 0.86541 90.356 89.812 90.677 0 103 29 5 0.869074906783321 0.00240723830651616 0.052693979695841 2.0854E-07 2 21009 148.36 128.72 4 13993000 6261.5 8757.1 7134.3 8389.8 8137.5 7481.8 9048.7 8175.9 8949 22791 5928.3 8270.5 7147.6 8622.2 8211.5 7591.6 9164.3 8860.8 8834.2 21650 2 2 2 2 2 2 2 2 2 2 1817 186 1595 1681 2018;2019 2019 323 GSDDELFLGGSNQDSVQGLGR 21 Phospho (STY) _GS(ph)DDELFLGGSNQDSVQGLGR_ GS(1)DDELFLGGSNQDSVQGLGR GS(107.79)DDELFLGGS(-107.79)NQDS(-142.28)VQGLGR 0 0 1 0 Q96JB3 Q96JB3 Q96JB3 HIC2 Hypermethylated in cancer 2 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.047607421875 3 744.325255 2229.95393 35084.5434446203 1.9545 0.0014548 102620 76.386 102630 76.388 821.045866927436 82.658 1.3576 82.658 82.398 83.755 0 132 46 4 0.981503440188581 0.00316166706036074 0.048073840985223 1.5294E-11 2 19325 193.77 160.12 3 20447000 13336 11985 13365 12169 11388 12227 12004 12936 11685 43962 12619 11323 13433 12484 11681 12345 12181 14273 11543 41695 2 2 2 2 2 2 2 2 2 2 1818 1697 1596 1682 2020;2021 2020 3115 GSEDSPPK 8 Phospho (STY) _GSEDS(ph)PPK_ GSEDS(1)PPK GS(-48.18)EDS(48.18)PPK 0 0 1 0 P48651 P48651 P48651 PTDSS1 Phosphatidylserine synthase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.837524414063 2 448.673498 895.332442 37567.5436998609 1.8909 0.00084839 510760 229.16 510760 229.16 677.836655308544 33.142 0.96557 33.142 32.442 33.407 0 54 32 3 0.93388814854578 0.0021318194658731 0.0761263642100386 0.0012739 1 7426 108.7 92.026 2 18447000 24541 18101 22411 17992 18134 25190 19940 20720 17134 4044 23214 17099 22640 18595 18678 24880 20134 21078 17026 4287.5 1 1 1 1 1 1 1 1 1 1 1819 627 1597 1683 2022 2022 1038 GSEEDSPKK 9 Phospho (STY) _GSEEDS(ph)PKK_ GSEEDS(1)PKK GS(-39.64)EEDS(39.64)PKK 0 0 1 1 O43719 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.977111816406 3 352.813021 1055.41723 40532.888667827 2.2473 0.00079286 649530 229.16 649530 229.16 581.975889123419 31.559 0.75864 31.559 31.239 31.998 -3.5527E-15 46 25 2 0.983379974419178 0.00243633827843049 0.0133720668209761 0.0059333 1 7085 85.522 66.776 2 58258000 19459 20145 21870 23296 17249 19989 15241 19465 22442 3830.7 18422 19048 21822 23674 17755 20184 15808 19661 21838 4057.6 1 1 1 1 1 1 1 1 1 1 1820 124 1598 1684 2023 2023 212 GSEEDSPKKESK 12 Phospho (STY) _GSEEDS(ph)PKKESK_ GSEEDS(1)PKKESK GS(-56.56)EEDS(56.56)PKKES(-57.46)K 0 0 1 2 O43719 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.422302246094 3 467.536216 1399.58682 35301.6088076991 2.7505 0.0012859 653530 305.55 653540 305.55 773.421894520895 32.838 0.49489 32.838 32.617 33.112 0 57 16 4 0.989831923848274 0.00371289456963332 0.0254274785168762 8.6806E-05 1 7338 125.5 105.95 3 26612000 27424 23111 26066 25162 28210 26348 28616 28908 29284 3141.4 25945 21843 26352 25729 28508 26395 29128 28992 28866 3627 1 1 1 1 1 1 1 1 1 1 1821 124 1599 1685 2024 2024 212 GSEGDCSPEDKNSVTAK 17 Phospho (STY) _GSEGDCS(ph)PEDKNSVTAK_ GSEGDCS(1)PEDKNSVTAK GS(-49.12)EGDCS(49.12)PEDKNS(-53.79)VT(-78.47)AK 0 0 1 1 Q9UKJ3 Q9UKJ3 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 850.08056640625 3 620.915427 1859.72445 34366.8488972893 2.2057 0.0013696 369070 229.16 369080 229.16 850.079125244953 41.947 0.48295 41.947 41.77 42.253 0 40 16 4 0.899961234729991 0.00161510318205156 0.025571152577882 7.2264E-11 1 9572 190.91 169.78 4 16098000 20895 20939 20203 21726 14915 22391 16753 18002 21987 9786.7 19770 19785 20322 22270 15479 22378 17108 18523 21473 9632 1 1 1 1 1 1 1 1 1 1 1822 2173 1600 1686 2025 2025 3916 GSEGYLAATYPTVGQTSPR 19 Phospho (STY) _GSEGYLAATYPTVGQTS(ph)PR_ GSEGYLAATYPT(0.001)VGQT(0.319)S(0.68)PR GS(-116.55)EGY(-125.55)LAAT(-50.6)Y(-76.63)PT(-29.49)VGQT(-3.29)S(3.29)PR 0 0 1 0 P21359 P21359 P21359 NF1 Neurofibromin;Neurofibromin truncated MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.365478515625 3 678.977127 2033.90955 36893.8353322478 1.3385 0.00090884 112500 76.387 112500 76.388 755.698535085698 68.755 0.56124 68.755 68.472 69.033 1.4211E-14 60 18 5 0.832735432878998 0.00117658228415183 0.00879282221221821 1.9986E-07 1 16114 140.07 114.56 7 22648000 8324.3 6557.5 8919.1 6653 6969.5 8877 6804.3 6510.5 7190.1 11044 7879.1 6195.2 8922.7 6861 7185.8 8789.7 6944.7 6955 7078.1 10550 1 1 1 1 1 1 1 1 1 1 1823 452 1601 1687 2026 2026 736 GSEMDNNCSPTRK 13 Phospho (STY) _GSEMDNNCS(ph)PTRK_ GSEMDNNCS(0.828)PT(0.172)RK GS(-43.48)EMDNNCS(6.82)PT(-6.82)RK 0 0 1 1 O95243 O95243 O95243 MBD4 Methyl-CpG-binding domain protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.9794921875 3 525.869095 1574.58546 37420.746309722 1.6578 0.00087178 290520 152.78 290520 152.78 678.644070438156 32.104 0.5655 32.104 31.791 32.356 0 54 17 5 0.918034946181521 0.00300719514958784 0.0635397014289333 0.028854 1 7166 55.864 35.201 3 19289000 19421 12740 17382 14638 11636 19695 9489 14897 16564 2900.9 18370 12045 17545 14996 12124 19461 9955.8 15216 16043 3076.3 1 1 1 1 1 1 1 1 1 1 1824 238 1602 1688 2027 2027 408 GSETPGATPGSK 12 Phospho (STY) _GSET(ph)PGATPGSK_ GSET(1)PGATPGSK GS(-46.64)ET(46.64)PGAT(-58.83)PGS(-102.46)K 0 0 1 0 O75533 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 813.913024902344 2 584.747725 1167.4809 35276.5841896015 1.2984 0.00075921 391900 229.16 391900 229.16 813.910671983203 34.52 0.37595 34.52 34.313 34.689 0 27 12 3 0.981721769415483 0.000939654743618382 0.0242628140694236 9.0332E-16 1 7716 218.6 182.08 4 23080000 23392 14542 23058 14288 16063 23272 16640 17313 13430 8645.7 22134 13736 23153 14830 16719 22867 16822 17857 13387 8541.6 1 1 1 1 1 1 1 1 1 1 1825 190 1603 1689 2028 2028 4338 GSFSDTGLGDGK 12 Phospho (STY) _GSFS(ph)DTGLGDGK_ GS(0.001)FS(0.99)DT(0.01)GLGDGK GS(-31.47)FS(20.07)DT(-20.07)GLGDGK 0 0 1 0 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.906982421875 2 610.745183 1219.47581 33535.3493486867 2.2907 0.001399 375220 229.16 375220 229.16 839.907690910151 63.677 1.4798 63.677 63.343 64.822 0 141 50 4 0.787744553453854 0.00365080324319233 0.109193378480796 1.6006E-11 3 14927 208.88 173.99 3 45312000 61276 83279 59603 81605 203750 59966 195960 111080 94282 58288 57977 78661 61863 83544 198050 61823 197060 111200 97340 57456 3 3 3 3 3 3 3 3 3 3 1826 2257 1604 1690 2029;2030;2031 2029 4173 GSFSSENYWR 10 Phospho (STY) _GS(ph)FSSENYWR_ GS(0.988)FS(0.011)S(0.001)ENYWR GS(19.66)FS(-19.66)S(-30.25)ENY(-87.88)WR 0 0 1 0 Q6P6C2 Q6P6C2 Q6P6C2 ALKBH5 RNA demethylase ALKBH5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.334655761719 2 656.753342 1311.49213 35731.4308228489 1.7242 0.0011323 174460 114.58 174470 114.58 771.333607342038 69.791 0.47024 69.791 69.546 70.017 0 38 15 3 0.910022092253301 0.00219060228928854 0.0552063670908805 1.7155E-06 1 16373 160.11 123.69 4 17159000 21633 17482 21658 16361 25310 24653 31061 25640 16380 17457 20471 16508 21862 17001 25536 24386 30940 26206 16785 17032 1 1 1 1 1 1 1 1 1 1 1827 1263 1605 1691 2032 2032 2239 GSGAILNTVK 10 Phospho (STY) _GS(ph)GAILNTVK_ GS(0.996)GAILNT(0.004)VK GS(23.81)GAILNT(-23.81)VK 0 0 1 0 Q8TEH3 Q8TEH3 Q8TEH3 DENND1A DENN domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 499.953186035156 3 347.177635 1038.51108 43075.9995816165 1.2025 0.00041748 440050 152.77 440050 152.78 499.953031806966 31.321 0.4725 31.321 31.03 31.502 3.5527E-15 35 15 3 0.807629058331282 0.00392432513475665 0.0695974923082335 0.034029 1 6984 46.985 8.4054 2 21645000 12324 20514 12283 21609 12211 11373 12282 14627 22191 2052.7 11661 19385 12370 21956 12407 11901 12770 14608 21476 2271.4 1 1 1 1 1 1 1 1 1 1 1828 1551 1606 1692 2033 2033 2845 GSGDTSNFDDYEEEDIRVSITEK 23 Phospho (STY) _GSGDTSNFDDYEEEDIRVS(ph)ITEK_ GSGDTSNFDDYEEEDIRVS(0.999)IT(0.001)EK GS(-231.38)GDT(-185.64)S(-172.71)NFDDY(-162.43)EEEDIRVS(28.74)IT(-28.74)EK 0 0 1 1 P22694 P22694 P22694 PRKACB cAMP-dependent protein kinase catalytic subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1049.15148925781 3 896.039508 2685.0967 30466.7561371115 1.2379 0.0011092 170500 152.77 170500 152.78 1049.14921667754 75.753 0.92732 75.753 75.489 76.417 0 79 31 4 0.988555294604522 0.0039393015342376 0.0611059452630648 1.922E-32 1 17749 288.16 268.66 6 33395000 3598.6 2196 2522 2302.5 4490.7 2287.5 5157.7 5445.7 2229.9 98770 3401.1 2075.1 2626.8 2357.4 4447.6 2519.2 5137.9 8316.1 2324.4 93130 1 1 1 1 1 1 1 1 1 1 1829 462 1607 1693 2034 2034 758 GSGFPDGEGSSR 12 Phospho (STY) _GSGFPDGEGS(ph)SR_ GSGFPDGEGS(0.907)S(0.093)R GS(-100.91)GFPDGEGS(9.9)S(-9.9)R 0 0 1 0 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.313110351563 2 616.732607 1231.45066 36409.5405744277 1.442 0.00088935 185790 114.58 185790 114.58 731.313627403872 40.891 1.0915 40.891 40.449 41.54 0 109 37 4 0.881837908030022 0.00160115782144109 0.0186964957518553 5.4349E-07 1 9262 145.83 112.11 3 68196000 20405 29798 19406 28118 45332 21825 49364 33630 29941 14086 19305 28140 19923 28872 44511 22332 49523 33700 30367 14042 1 1 1 1 1 1 1 1 1 1 1830 403 1608 1694 2035 2035 637 GSGFPDGEGSSRRPTLTTFFGR 22 Phospho (STY) _GSGFPDGEGS(ph)SRRPTLTTFFGR_ GSGFPDGEGS(0.966)S(0.033)RRPTLTTFFGR GS(-79.05)GFPDGEGS(14.63)S(-14.63)RRPT(-33.6)LT(-39.01)T(-40.15)FFGR 0 0 1 2 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.572143554688 4 603.030036 2408.09104 37879.2520949658 1.6793 0.0010127 95005 57.291 95006 57.292 660.571629409747 80.271 1.3508 80.271 79.872 81.223 0 172 45 5 0.893298434930899 0.00182816424620896 0.0140200040603002 3.6538E-05 1 18916 119.14 99.348 6 41711000 3372 3897 3373.1 4226.9 6898.5 3696.4 6685.9 4028.7 3704.7 5374.8 3190.8 3683.3 3439.3 4311.4 6786.6 3743.1 6734.3 4190.2 3781.9 5154.3 1 1 1 1 1 1 1 1 1 1 1831 403 1609 1695 2036 2036 637 GSGGFGSTGKN 11 Phospho (STY) _GSGGFGST(ph)GKN_ GSGGFGS(0.228)T(0.772)GKN GS(-70.16)GGFGS(-5.29)T(5.29)GKN 0 0 1 1 P33316 P33316 P33316 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.870971679688 2 524.708403 1047.40225 36524.0283930363 2.2175 0.0011635 436740 229.16 436750 229.16 753.871000975486 41.745 0.56851 41.745 41.512 42.08 0 49 19 4 0.977956911848329 0.00160061912129279 0.0225992066000346 1.9186E-06 2 9514 147.1 116.66 3 27632000 45386 51944 47837 50940 42299 49349 45339 51015 57881 23125 42956 49064 47966 52339 43307 49600 46349 51804 56580 22956 2 2 2 2 2 2 2 2 2 2 1832 532 1610 1696 2037;2038 2037 4446 GSGIFDESTPVQTR 14 Phospho (STY) _GS(ph)GIFDESTPVQTR_ GS(0.998)GIFDES(0.002)TPVQTR GS(27.88)GIFDES(-27.88)T(-44.07)PVQT(-61.73)R 0 0 1 0 Q9H910 Q9H910 Q9H910 HN1L Hematological and neurological expressed 1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.434936523438 2 787.348335 1572.68212 33688.8373683808 1.9652 0.0015473 145530 114.58 145530 114.58 901.929466837347 67.071 0.49536 67.071 66.891 67.387 0 43 16 3 0.979698631053901 0.00113818581120838 0.0353080259155197 0.00025759 1 15750 108.06 85.208 4 14643000 6446.3 12377 6811.7 13714 9499.2 6513.6 8517.6 10594 13312 12518 6101.2 11700 6869 13884 9471.8 6925 8848.7 10845 12931 12032 1 1 1 1 1 1 1 1 1 1 1833 1965 1611 1697 2039 2039 3577 GSGSLEGEAAGCGR 14 Phospho (STY) _GS(ph)GSLEGEAAGCGR_ GS(0.915)GS(0.085)LEGEAAGCGR GS(10.33)GS(-10.33)LEGEAAGCGR 0 0 1 0 Q7Z6I6 Q7Z6I6 Q7Z6I6 ARHGAP30 Rho GTPase-activating protein 30 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.851623535156 2 694.26903 1386.52351 34625.4289029354 2.1174 0.00147 165040 114.58 165040 114.58 808.849694709736 38.658 0.43559 38.658 38.439 38.875 0 41 14 4 0.594634810528319 0.00268932648344602 0.056307764189245 4.9267E-23 1 8781 278.53 243.22 2 41283000 61746 19628 66321 21123 53718 67364 49577 46549 20199 8045.4 58444 18550 66356 22340 55171 65212 49860 47741 21176 8653 1 1 1 1 1 1 1 1 1 1 1834 1354 1612 1698 2040 2040 2459;2460 GSGSLEGEAAGCGR 14 Phospho (STY) _GSGS(ph)LEGEAAGCGR_ GS(0.001)GS(0.999)LEGEAAGCGR GS(-28.4)GS(28.4)LEGEAAGCGR 0 0 1 0 Q7Z6I6 Q7Z6I6 Q7Z6I6 ARHGAP30 Rho GTPase-activating protein 30 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.851928710938 2 694.26903 1386.52351 NaN NaN NaN NaN NaN NaN NaN NaN 37.187 1 37.187 36.687 37.687 0 NaN NaN NaN 8.5805E-08 1 8397 152.11 132.9 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1835 1354 1612 1698 2041 2041 2459;2460 GSGSQSSVPSVDQFTGVGIR 20 Phospho (STY) _GSGS(ph)QSSVPSVDQFTGVGIR_ GS(0.118)GS(0.875)QS(0.007)SVPSVDQFTGVGIR GS(-8.72)GS(8.72)QS(-20.93)S(-36.2)VPS(-73.59)VDQFT(-116.92)GVGIR 0 0 1 0 Q9UQE7 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1138.05688476563 2 1022.97041 2043.92626 29675.5213212357 0.91984 0.00094097 112010 114.58 112010 114.58 1138.05251507431 80.231 0.35735 80.231 80.047 80.404 0 20 11 3 0.972148314764283 0.000595224913096301 0.00769355782824012 5.1206E-08 1 18790 168.99 144.07 6 8614400 3506.9 3373.9 4483.3 3756.1 5821.3 4208.9 6736.1 6012.5 3716.7 32183 3322.1 3189.4 4476.4 3840.6 5838.5 4281.8 6730.1 6930.8 3795.3 30443 1 1 1 1 1 1 1 1 1 1 1836 2230 1613 1699 2042 2042 4122 GSGTASDDEFENLR 14 Phospho (STY) _GSGTAS(ph)DDEFENLR_ GSGT(0.026)AS(0.974)DDEFENLR GS(-61.26)GT(-15.81)AS(15.81)DDEFENLR 0 0 1 0 Q7Z6Z7 Q7Z6Z7 Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 903.890686035156 2 789.309407 1576.60426 33028.0595282585 1.6837 0.001329 145170 114.58 145170 114.58 903.890304770378 59.031 1.8176 59.031 58.728 60.546 0 189 62 5 0.992402710422357 0.00264976591124977 0.0707874815515513 2.3953E-31 2 13801 302.41 273.24 3 63403000 30669 26375 30041 29263 44090 29322 44641 36171 27877 32193 29019 24932 30459 29871 43905 29534 44955 36987 28217 31151 2 2 2 2 2 2 2 2 2 2 1837 1356 1614 1700 2043;2044 2043 2466 GSISEDELITAIK 13 Phospho (STY) _GSIS(ph)EDELITAIK_ GS(0.027)IS(0.973)EDELITAIK GS(-15.64)IS(15.64)EDELIT(-122.18)AIK 0 0 1 0 Q16799 Q16799 Q16799 RTN1 Reticulon-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.679321289063 3 485.904128 1454.69056 40285.0853662576 1.5702 0.00076295 314410 152.78 314420 152.78 639.013660486509 95.203 0.9072 95.203 94.885 95.792 0 61 31 4 0.971700253980354 0.000921689707354865 0.0113752737833034 6.7473E-11 1 22139 195.94 161.03 3 13307000 2151.5 2254.2 1944.4 2516.3 17301 1624.5 18519 8087.1 2397.2 6272 2035.1 2130.9 2160.1 2553.3 16652 1760.9 18351 8050.5 3049.1 6093 1 1 1 1 1 1 1 1 1 1 1838 1114 1615 1701 2045 2045 1939 GSKPSPLSVK 10 Phospho (STY) _GSKPS(ph)PLSVK_ GS(0.005)KPS(0.995)PLS(0.001)VK GS(-23.42)KPS(23.42)PLS(-32.89)VK 0 0 1 1 Q96S94 Q96S94 Q96S94 CCNL2 Cyclin-L2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 589.684936523438 3 360.521402 1078.54238 40079.727954013 1.5758 0.00056811 635640 229.16 635640 229.16 589.684609690648 55.427 0.75898 55.427 55.074 55.833 0 88 25 5 0.954958871537925 0.0099681451288957 0.0784411428264315 0.0025244 1 12906 93.859 69.067 3 240620000 71914 54393 70245 52454 75633 65987 80298 72863 57154 4786.2 68043 51372 70903 54194 76478 65633 80878 72965 57376 6193.1 1 1 1 1 1 1 1 1 1 1 1839 1746 1616 1702 2046 2046 3205 GSLSPAR 7 Phospho (STY) _GSLS(ph)PAR_ GS(0.009)LS(0.991)PAR GS(-20.65)LS(20.65)PAR 0 0 1 0 O15014 O15014 O15014 ZNF609 Zinc finger protein 609 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 498.757568359375 2 384.176011 766.337468 44111.4990951453 0.61836 0.00023756 298250 114.58 298250 114.58 498.757384164349 32.223 0.47317 32.223 31.969 32.442 0 32 15 3 0.816626089490297 0.00160308981492677 0.0589096725840066 0.023896 1 7194 64.42 30.682 2 9944600 12525 15562 11753 14090 16457 12040 14954 14891 14997 2499.6 11849 14692 11933 14524 16402 12200 15295 14902 14796 2698.3 1 1 1 1 1 1 1 1 1 1 1840 74 1617 1703 2047 2047 122 GSPDGSLQTGKPSAPK 16 Phospho (STY) _GS(ph)PDGSLQTGKPSAPK_ GS(0.977)PDGS(0.023)LQTGKPSAPK GS(16.23)PDGS(-16.23)LQT(-56.7)GKPS(-92.64)APK 0 0 1 1 Q8IZL8 Q8IZL8 Q8IZL8 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.751953125 3 536.253932 1605.73997 36041.1286351123 1.3597 0.00072917 427340 229.16 427340 229.16 765.752006377125 48.171 0.52838 48.171 47.976 48.505 0 46 17 3 0.994648289983343 0.00809380817510879 0.0474375808916507 1.3807E-10 1 11165 180.13 151.66 4 74746000 47156 62458 49078 68180 47663 51451 52837 61645 74922 8867.5 44629 59034 49300 69387 48546 52463 54140 61707 72989 9776.5 1 1 1 1 1 1 1 1 1 1 1841 1444 1618 1704 2048 2048 2679 GSPEEELPLPAFEK 14 Phospho (STY) _GS(ph)PEEELPLPAFEK_ GS(1)PEEELPLPAFEK GS(103.5)PEEELPLPAFEK 0 0 1 0 Q5JTD0 Q5JTD0 Q5JTD0 TJAP1 Tight junction-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.694458007813 3 541.583166 1621.72767 37743.2035411047 1.9009 0.0010295 282090 152.78 282090 152.78 694.692801747615 97.387 0.86619 97.387 96.98 97.846 0 105 29 5 0.954725582687998 0.00282152342794992 0.0298500451896629 0.00017696 1 22573 103.5 85.7 1 25190000 5359 2679.6 5154.6 3498.9 4505.3 5798.5 4326.4 4243.3 3747.7 7292 5070.2 2536 5193.9 3579.6 4607.3 5703.8 4396.7 4536.3 3722.4 6964.5 1 1 1 1 1 1 1 1 1 1 1842 1170 1619 1705 2049 2049 2025 GSPHYFSPFRPY 12 Phospho (STY) _GS(ph)PHYFSPFRPY_ GS(1)PHYFSPFRPY GS(45.96)PHY(-75.73)FS(-45.96)PFRPY(-122.52) 0 0 1 1 Q13242 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 588.610412597656 3 512.222015 1533.64421 40810.4362015754 1.3981 0.00071615 149130 76.388 149130 76.388 588.610186911041 80.844 2.95 80.844 80.343 83.293 0 353 101 7 0.992818523955089 0.0364807503455167 0.426559663815106 4.7142E-11 3 18873 191.06 162.85 4 827300000 22816 36659 27177 33588 24637 34421 40032 42291 29943 29962 21607 34613 27113 34688 25360 34620 39734 43018 29972 29191 3 3 3 3 3 3 3 3 3 3 1843 938 1620 1706 2050;2051;2052 2050 1546;1547 GSPHYFSPFRPY 12 2 Phospho (STY) _GS(ph)PHYFS(ph)PFRPY_ GS(1)PHYFS(0.969)PFRPY(0.031) GS(48.06)PHY(-40.43)FS(14.92)PFRPY(-14.92) 0 0 2 1 Q13242 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.264953613281 3 538.877458 1613.61055 39979.2233797279 1.6038 0.00086425 141750 76.387 141750 76.388 615.264906192402 89.957 2.419 89.957 89.491 91.91 1.4211E-14 245 83 4 0.968953406257958 0.00240338001339781 0.0160081670533989 3.8736E-07 3 20907 144.3 118.16 6 60229000 11638 12873 13628 12897 11045 13976 11267 14340 13265 22461 11020 12161 13577 13258 11366 14007 11513 15047 13003 21481 3 3 3 3 3 3 3 3 3 3 1844 938 1620 1707 2053;2054;2055 2053 1546;1547 GSPHYFSPFRPY 12 2 Phospho (STY) _GS(ph)PHYFSPFRPY(ph)_ GS(0.906)PHY(0.038)FS(0.336)PFRPY(0.719) GS(8.61)PHY(-13.01)FS(-4.14)PFRPY(4.14) 0 0 2 1 Q13242 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 922.398803710938 2 807.812549 1613.61055 32613.9064100901 2.0319 0.0016414 141840 114.58 141840 114.58 922.894831608392 89.93 1.622 89.93 89.491 91.113 0 168 55 4 0.612404618017288 0.000621634335269455 0.0260972912590708 0.038439 2 21177 52.891 38.225 6 45140000 19396 22755 20875 20515 17439 22256 20014 23700 24122 119200 18359 21483 20897 21229 17940 22473 20361 27308 23627 112790 2 2 2 2 2 2 2 2 2 2 1845 938 1620 1707 2056;2057 2057 1546;1547 GSPLNAAPYGIESMSQDTEVR 21 Phospho (STY) _GSPLNAAPYGIESMS(ph)QDTEVR_ GSPLNAAPYGIES(0.132)MS(0.589)QDT(0.279)EVR GS(-62.95)PLNAAPY(-37.35)GIES(-6.5)MS(3.25)QDT(-3.25)EVR 0 0 1 0 P18031 P18031 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.395568847656 3 768.006757 2300.99844 34579.9589570758 1.6716 0.0012838 99460 76.386 99462 76.387 844.726937538458 78.852 0.49824 78.852 78.607 79.106 0 38 16 3 0.918462391737656 0.000309382509476764 0.00672094385343189 0.0040149 1 18509 90.899 68.011 5 17494000 4728.4 5449.2 4924.2 4153.7 4121.3 3993.1 4799.9 5434.2 5381.1 11513 4475 5140.3 4938.6 4341.4 4239.9 4049.4 4869.2 5742 5284.9 10966 1 1 1 1 1 1 1 1 1 1 1846 425 1621 1708 2058 2058 683;684 GSPLNAAPYGIESMSQDTEVR 21 Phospho (STY) _GS(ph)PLNAAPYGIESMSQDTEVR_ GS(1)PLNAAPYGIESMSQDTEVR GS(67.02)PLNAAPY(-67.02)GIES(-99.74)MS(-118.11)QDT(-132.64)EVR 0 0 1 0 P18031 P18031 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.394287109375 3 768.006757 2300.99844 34545.9253367347 1.3933 0.0010701 99462 76.387 99463 76.389 844.395377131298 80.991 0.44165 80.991 80.752 81.194 1.4211E-14 30 14 3 0.85500680519818 0.00184089246080468 0.0246534292149321 6.9601E-08 1 18956 154.34 129.41 5 13829000 6460.9 5769.9 7571.6 5767 4615.3 6842 4719.3 6081 6524.8 16443 6117.8 5450.6 7524.3 5938.8 4861.4 6831.5 4848.3 6624.7 6361.5 15624 1 1 1 1 1 1 1 1 1 1 1847 425 1621 1708 2059 2059 683;684 GSPNTASAEATLPR 14 Phospho (STY) _GS(ph)PNTASAEATLPR_ GS(0.961)PNT(0.039)ASAEATLPR GS(13.95)PNT(-13.95)AS(-56.44)AEAT(-52.22)LPR 0 0 1 0 Q6PJG6 Q6PJG6 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.911010742188 2 726.329945 1450.64534 34698.2848369656 1.3243 0.00096185 157750 114.58 157750 114.58 840.91082459441 48.671 0.57818 48.671 48.418 48.997 0 33 19 2 0.970281599339953 0.000710932233579444 0.00809372013397393 3.3238E-10 1 11294 177.07 151.43 4 30145000 16870 19861 16893 18754 12276 16154 13192 15593 20110 9540.8 15963 18756 16954 19282 12750 16319 13573 15950 19549 9344.7 1 1 1 1 1 1 1 1 1 1 1848 1270 1622 1709 2060 2060 2250 GSPQQIDHAK 10 Phospho (STY) _GS(ph)PQQIDHAK_ GS(1)PQQIDHAK GS(127.07)PQQIDHAK 0 0 1 0 Q92945 Q92945 Q92945 KHSRP Far upstream element-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.283081054688 3 387.508044 1159.5023 41466.4649893256 0.40329 0.00015628 394250 152.78 394250 152.78 540.283906139472 35.792 0.75633 35.792 35.389 36.145 7.1054E-15 76 25 4 0.661526233515817 0.00561337562274182 0.0804106737916433 8.5366E-05 1 8024 127.07 94.177 1 76913000 27673 44053 32516 39774 35695 33129 31919 36445 43376 3974.3 26204 41591 32495 40993 35993 33553 32985 36548 42313 4585.7 1 1 1 1 1 1 1 1 1 1 1849 1634 1623 1710 2061 2061 3019 GSPRPQAPK 9 Phospho (STY) _GS(ph)PRPQAPK_ GS(1)PRPQAPK GS(107.34)PRPQAPK 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 492.610198974609 3 339.834091 1016.48044 44742.8252088901 1.4101 0.00047919 449560 152.78 449560 152.78 492.609437792282 30.363 0.92744 30.363 30.045 30.973 0 122 30 6 0.896978918457428 0.0115139245222626 0.250358270146007 0.00034159 1 6753 107.34 90.767 1 169150000 52757 50907 48540 42923 39381 51938 41309 46267 50838 3258.8 49906 48045 49011 44704 40541 51592 42218 46727 49758 4139.3 1 1 1 1 1 1 1 1 1 1 1850 1035 1624 1711 2062 2062 1780 GSPRYSPR 8 2 Phospho (STY) _GS(ph)PRYS(ph)PR_ GS(1)PRY(0.003)S(0.997)PR GS(39.26)PRY(-25.79)S(25.79)PR 0 0 2 1 Q07955 Q07955 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.7900390625 2 540.207189 1078.39982 38736.0141229296 2.1955 0.001186 212110 114.58 212110 114.58 654.788513158506 28.403 1.0611 28.403 27.895 28.957 0 78 36 3 0.907356938084662 0.00216896226192659 0.0571882990641955 0.014739 1 6354 73.082 49.856 3 21087000 12497 13809 12904 15112 11046 12887 13567 13264 13619 3942.8 11826 13052 12952 15401 11355 13029 13690 13409 13436 4019.6 1 1 1 1 1 1 1 1 1 1 1851 884 1625 1712 2063 2063 1434;1435 GSPSVAASSPPAIPK 15 Phospho (STY) _GSPSVAASS(ph)PPAIPK_ GSPSVAAS(0.073)S(0.927)PPAIPK GS(-44.34)PS(-42.49)VAAS(-11.05)S(11.05)PPAIPK 0 0 1 0 Q92610 Q92610 Q92610 ZNF592 Zinc finger protein 592 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.350891113281 3 482.572713 1444.69631 39023.5466933453 1.8805 0.00090749 316580 152.78 316590 152.78 635.348154605621 62.014 0.95654 62.014 61.448 62.405 0 69 32 3 0.760174242861597 0.00135872391470693 0.0170915109611637 0.009271 1 14542 76.158 62.194 4 12673000 9869.8 10764 8954 10060 8699.7 10028 10246 9769.3 10094 12105 9335.9 10164 9068.6 10371 8865.2 10073 10351 10174 9966.2 11625 1 1 1 1 1 1 1 1 1 1 1852 1607 1626 1713 2064 2064 2957 GSPTGGAQLLK 11 Phospho (STY) _GS(ph)PTGGAQLLK_ GS(1)PTGGAQLLK GS(37.36)PT(-37.36)GGAQLLK 0 0 1 0 Q14684 Q14684 Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.940856933594 2 554.773546 1107.53254 35374.655936231 2.316 0.0012849 413080 229.16 413080 229.16 783.936743206222 63.978 0.60856 63.978 63.692 64.3 0 74 20 5 0.979443164301225 0.00813466607175608 0.176165940572211 1.29E-10 1 14993 205.96 149.7 2 183810000 58527 79255 53903 71232 103620 50948 105210 82500 86422 18421 55365 74824 55154 73303 102220 52403 106500 82086 86069 19254 1 1 1 1 1 1 1 1 1 1 1853 1020 1627 1714 2065 2065 1740 GSPVSEIGWETPPPESPR 18 Phospho (STY) _GSPVSEIGWETPPPES(ph)PR_ GSPVSEIGWET(0.001)PPPES(0.999)PR GS(-120.19)PVS(-112.51)EIGWET(-28.87)PPPES(28.87)PR 0 0 1 0 Q13884 Q13884 Q13884 SNTB1 Beta-1-syntrophin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.69189453125 3 667.969972 2000.88809 36008.6075060019 1.7319 0.0011568 114360 76.387 114360 76.389 744.691532950613 76.662 1.04 76.662 76.185 77.225 1.4211E-14 114 35 4 0.927721968043702 0.00431940996664077 0.0999206204121036 1.3548E-06 2 17927 138.09 119.02 4 25424000 16797 13993 17900 12451 14357 18836 12896 14884 14660 22734 15898 13210 17915 12981 14759 18589 13245 15768 14390 21751 2 2 2 2 2 2 2 2 2 2 1854 981 1628 1715 2066;2067 2066 1657 GSQPPPAAESQSSLRR 16 Phospho (STY) _GSQPPPAAESQSS(ph)LRR_ GSQPPPAAESQS(0.01)S(0.99)LRR GS(-214.98)QPPPAAES(-54.01)QS(-20.02)S(20.02)LRR 0 0 1 1 O43491 O43491 O43491 EPB41L2 Band 4.1-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.663696289063 3 583.275618 1746.80503 38736.7149274356 1.779 0.0010376 130960 76.388 130970 76.389 659.998004920571 29.13 0.50357 29.13 28.926 29.429 0 53 16 4 0.902936090439474 0.00229754038756832 0.0319715309033142 8.9273E-16 1 6474 220.91 160.36 4 16073000 8667.2 6266.2 7727.5 5482.1 7128.4 8030 7402.4 6151.9 6146 2081.1 8197.9 5915 7828.3 5717.6 7272 7915.6 7487.5 6306.3 6117.5 2101.9 1 1 1 1 1 1 1 1 1 1 1855 114 1629 1716 2068 2068 197 GSQSPKR 7 Phospho (STY) _GSQS(ph)PKR_ GSQS(1)PKR GS(-49.21)QS(49.21)PKR 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.356811523438 2 420.192192 838.369831 38644.320482564 2.8152 0.0011829 545380 229.16 545380 229.16 649.355505922923 22.327 0.49099 22.327 22.169 22.66 0 44 16 4 0.993093510939677 0.0107709497737803 0.269000691374197 0.0090683 1 5017 91.549 54.529 2 27710000 9588.3 11495 8721.8 10898 13994 9249.5 14462 13218 12662 2192.2 9069.8 10856 8897.6 11200 13895 9398.7 14649 13171 12570 2370.1 1 1 1 1 1 1 1 1 1 1 1856 2257 1630 1717 2069 2069 4174 GSRPASPAAK 10 Phospho (STY) _GSRPAS(ph)PAAK_ GS(0.011)RPAS(0.989)PAAK GS(-19.6)RPAS(19.6)PAAK 0 0 1 1 Q9P2N6 Q9P2N6 Q9P2N6 KANSL3 KAT8 regulatory NSL complex subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 493.941131591797 3 341.165729 1020.47536 44407.6685986599 0.47008 0.00016038 447810 152.78 447810 152.78 493.94188500923 27.063 0.26622 27.063 26.886 27.152 0 26 8 4 0.991663226177654 0.00200644679745 0.0185036640302245 0.0079046 1 6017 76.01 41.255 2 21148000 14768 14241 16890 14660 11539 14723 12981 13558 13865 2626.2 13983 13456 16823 15028 12047 14746 13169 13723 13643 2786.7 1 1 1 1 1 1 1 1 1 1 1857 2113 1631 1718 2070 2070 3812 GSRPGKSPER 10 Phospho (STY) _GSRPGKS(ph)PER_ GS(0.006)RPGKS(0.994)PER GS(-22)RPGKS(22)PER 0 0 1 2 O75376 O75376 O75376 NCOR1 Nuclear receptor corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 536.959411621094 3 384.183672 1149.52919 43184.2020441932 1.5962 0.00061324 397660 152.77 397660 152.78 536.958064019135 23.165 1.6787 23.165 22.342 24.021 0 104 57 5 0.901405154711678 0.0479604280851693 0.74814845303558 0.037352 1 5201 55.196 35.429 2 47090000 18105 14443 19915 16469 18464 18696 17945 17708 15394 1724.7 17138 13655 19931 16822 18813 18631 18222 17852 15298 2033.9 1 1 1 1 1 1 1 1 1 1 1858 180 1632 1719 2071 2071 311 GSRPLSSFVR 10 Phospho (STY) _GSRPLSS(ph)FVR_ GSRPLS(0.316)S(0.684)FVR GS(-50.53)RPLS(-3.36)S(3.36)FVR 0 0 1 1 Q96HA1 Q96HA1 Q96HA1 POM121 Nuclear envelope pore membrane protein POM 121 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 472.252105712891 3 395.86405 1184.57032 46669.6380502034 0.405 0.00016032 192960 76.388 192970 76.388 472.251887467362 57.138 0.58005 57.138 56.841 57.422 0 40 19 3 0.979390209859212 0.000650202884778837 0.012922197206781 0.0099398 1 13381 69.258 51.199 3 7256700 8211.6 9453.4 8827.5 8670.3 6101 7601.9 7587.3 7881.5 9089.9 1767.2 7772.6 8925.9 8822.8 8933 6374.7 7674.2 7693 7948.1 8905.3 1846.4 1 1 1 1 1 1 1 1 1 1 1859 1688 1633 1720 2072 2072 3103 GSRPPLILQSQSLPCSSPR 19 Phospho (STY) _GSRPPLILQSQSLPCS(ph)SPR_ GSRPPLILQSQSLPCS(0.747)S(0.253)PR GS(-127.68)RPPLILQS(-68.68)QS(-39.81)LPCS(4.7)S(-4.7)PR 0 0 1 1 Q6KC79 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.416137695313 3 720.692556 2159.05584 35289.1801750318 1.9006 0.0013698 105990 76.386 105990 76.388 797.412290656522 67.074 1.372 67.074 66.544 67.916 0 146 46 6 0.993440199494654 0.00960243456848718 0.152703337299326 9.2755E-08 1 15715 159.16 124.25 5 153350000 11635 11123 11809 11482 9220.9 11886 9689.4 10662 11309 11749 11010 10510 11850 11774 9518.3 11903 9884.8 11096 11090 11310 1 1 1 1 1 1 1 1 1 1 1860 1244 1634 1721 2073 2073 2203 GSSFTFLTPGPNWDFTLK 18 Phospho (STY) _GS(ph)SFTFLTPGPNWDFTLK_ GS(0.423)S(0.423)FT(0.152)FLT(0.001)PGPNWDFTLK GS(0)S(0)FT(-4.44)FLT(-28.37)PGPNWDFT(-62.85)LK 0 0 1 0 Q7Z628 Q7Z628 Q7Z628 NET1 Neuroepithelial cell-transforming gene 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.100463867188 3 698.990596 2093.94996 34159.1739024808 1.4187 0.00099166 218570 152.78 218570 152.78 852.101815052939 102.14 0.20756 102.14 102.04 102.25 0 10 6 3 0.610023716856539 0.00206381842921007 0.0210866887409398 0.012453 1 24070 67.56 54.793 5 19360000 10617 11721 12028 11613 10152 11747 11596 11886 11554 36548 10052 11072 12010 11932 10434 11840 11733 13018 11402 34689 1 1 1 1 1 1 1 1 1 1 1861 1352 1635 1722 2074 2074 2449;2450 GSSGSVDETLFALPAASEPVIR 22 Phospho (STY) _GSSGS(ph)VDETLFALPAASEPVIR_ GS(0.281)S(0.323)GS(0.375)VDET(0.021)LFALPAASEPVIR GS(-1.25)S(-0.65)GS(0.65)VDET(-12.43)LFALPAAS(-84.58)EPVIR 0 0 1 0 Q9NQC3 Q9NQC3 Q9NQC3 RTN4 Reticulon-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.426452636719 3 761.701662 2282.08316 37850.0271132433 1.8351 0.0013978 100290 76.389 100290 76.39 838.426465625595 100.46 0.167 100.46 100.37 100.53 0 16 5 5 0.846980091548579 0.00179928420922155 0.039763676927284 0.0054597 1 23503 87.196 67.328 5 19331000 6702.9 7832.5 6842.9 7128 6700.2 7137.4 5746.7 8034.8 8863.1 37820 6343.2 7395.1 6878.8 7361.9 6797.3 7236.2 5980.7 9164.3 8613.1 35798 1 1 1 1 1 1 1 1 1 1 1862 2003 1636 1723 2075 2075 3635;3636 GSSPGPRPVEGTPASR 16 Phospho (STY) _GSS(ph)PGPRPVEGTPASR_ GS(0.007)S(0.993)PGPRPVEGTPASR GS(-21.46)S(21.46)PGPRPVEGT(-85.34)PAS(-118.68)R 0 0 1 1 Q13112 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 930.963623046875 2 816.380501 1630.74645 32354.207267633 2.1472 0.0017529 140350 114.58 140360 114.58 930.961859110098 30.492 0.4466 30.492 30.254 30.7 -3.5527E-15 43 14 4 0.977052879336614 0.00139314416853183 0.0659695560839962 7.5892E-11 1 6791 201.4 168.14 4 26777000 5951.7 7527.7 6375 7775.1 6061.4 6336.2 4940.1 6460.1 9090.2 1120.6 5633.4 7112.5 6389 7945 6157.7 6419 5196 6508.9 8793.3 1204.7 1 1 1 1 1 1 1 1 1 1 1863 924 1637 1724 2076 2076 1522 GSSPSIRPIQGSQGSSSPVEK 21 2 Phospho (STY) _GSS(ph)PSIRPIQGSQGSS(ph)SPVEK_ GS(0.015)S(0.984)PSIRPIQGS(0.004)QGS(0.167)S(0.644)S(0.186)PVEK GS(-19.22)S(19.22)PS(-33.36)IRPIQGS(-22.28)QGS(-5.88)S(5.48)S(-5.48)PVEK 0 0 2 1 Q92560 Q92560 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.111999511719 3 749.001434 2243.98247 33186.4057205093 1.4238 0.0010664 203970 152.78 203970 152.78 902.111226445184 52.76 0.32154 52.76 52.549 52.87 0 31 10 4 0.972500205036804 0.00256014474294545 0.0226022004030737 1.0309E-07 1 12282 147.69 125.06 21 18176000 13273 17564 14194 15457 10916 13897 10575 14141 18946 8085 12563 16580 14199 15975 11274 14017 11010 14418 18339 7940.3 1 1 1 1 1 1 1 1 1 1 1864 1600 1638 1725 2077 2077 2936;2937 GSSPTPPCSPVQPSK 15 2 Phospho (STY) _GSSPT(ph)PPCS(ph)PVQPSK_ GS(0.014)S(0.081)PT(0.905)PPCS(1)PVQPSK GS(-18.13)S(-10.48)PT(10.48)PPCS(34.41)PVQPS(-34.41)K 0 0 2 0 Q9NUL3 Q9NUL3 Q9NUL3 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 715.672302246094 3 562.559578 1684.6569 37212.1878710093 1.9694 0.0011079 271570 152.77 271570 152.78 715.333478251547 44.539 1.2483 44.539 43.815 45.063 0 100 42 4 0.901868077719921 0.00160963984483793 0.0167412941111233 0.0086286 1 10193 90.718 70.337 10 28873000 19238 17882 24126 19381 21121 21324 20165 19868 19882 6093.1 18222 16901 23974 19840 21597 21281 20564 20170 19630 6197.2 1 1 1 1 1 1 1 1 1 1 1865 2038 1639 1726 2078 2078 3701;3702;4784 GSSPTPPCSPVQPSK 15 Phospho (STY) _GS(ph)SPTPPCSPVQPSK_ GS(0.588)S(0.403)PT(0.008)PPCSPVQPSK GS(1.64)S(-1.64)PT(-18.53)PPCS(-96.21)PVQPS(-162.44)K 0 0 1 0 Q9NUL3 Q9NUL3 Q9NUL3 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.01416015625 3 535.904134 1604.69057 37166.5414002258 1.0783 0.00057787 285080 152.78 285080 152.78 688.679669312247 48.236 0.52632 48.236 48.008 48.534 0 53 17 4 0.986844923311947 0.00350199445079641 0.0188794454937223 6.7015E-08 1 11174 172.93 142.95 5 31841000 17462 20425 20528 23850 12904 19904 12963 19202 21821 6551.8 16535 19314 20401 24216 13554 20131 13435 19486 21155 6613.7 1 1 1 1 1 1 1 1 1 1 1866 2038 1639 1727 2079 2079 3701;3702;4784 GSSRQGSPGSVSK 13 2 Phospho (STY) _GS(ph)SRQGS(ph)PGSVSK_ GS(0.532)S(0.532)RQGS(0.927)PGS(0.007)VS(0.001)K GS(0)S(0)RQGS(8.56)PGS(-21.16)VS(-29.5)K 0 0 2 1 O00425 O00425 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.965087890625 3 465.188472 1392.54359 41682.582680773 1.7751 0.00082577 328420 152.78 328420 152.78 617.963847307694 31.525 0.49089 31.525 31.239 31.73 3.5527E-15 29 16 3 0.653588662255562 0.00102140041033806 0.0184020109057074 0.02523 1 7042 57.679 33.297 10 7516000 10685 14516 10128 14249 14541 9450.2 13515 14275 14526 3355.2 10109 13711 10283 14569 14483 9753.4 13834 14233 14290 3489.7 1 1 1 1 1 1 1 1 1 1 1867 46 1640 1728 2080 2080 69;70;71 GSSTPTK 7 Phospho (STY) _GSST(ph)PTK_ GSS(0.081)T(0.918)PTK GS(-33.13)S(-10.53)T(10.53)PT(-34.74)K 0 0 1 0 O60271 O60271 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.323913574219 2 379.160026 756.305499 40254.4916294135 2.1637 0.00082039 604400 229.16 604400 229.16 608.323542070432 28.783 0.37756 28.783 28.609 28.987 0 19 12 2 0.982399953994294 0.00110599280214884 0.0182223225292076 0.0089257 1 6412 93.178 45.604 4 7896000 12003 15822 10738 17600 9964.9 10867 9868.9 14608 18317 4150.7 11353 14956 10876 17855 10165 11247 10282 14633 17715 4246.4 1 1 1 1 1 1 1 1 1 1 1868 139 1641 1729 2081 2081 4333 GSTDNLMDDIER 12 Unmodified _GSTDNLMDDIER_ 0 0 0 0 P50990 P50990 P50990 CCT8 T-complex protein 1 subunit theta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.882446289063 2 683.301181 1364.58781 33978.4629320459 1.9557 0.0013363 167680 114.58 167690 114.58 797.880006340091 67.331 0.64251 67.331 67.062 67.705 0 58 21 4 0.767583722623185 0.00474909132272887 0.290766881768693 3.795E-10 1 15815 180.24 134.11 1 34681000 37167 42441 37700 41879 31219 36670 34486 40139 42435 16761 35172 40089 37858 42950 32117 37063 35165 40633 41533 16711 1 1 1 1 1 1 1 1 1 1 1869 671 1642 1730 2082 2082 GSTSSSPYVAASHTPPINGSDSILGTR 27 Phospho (STY) _GSTSSSPYVAASHT(ph)PPINGSDSILGTR_ GSTSSSPYVAAS(0.03)HT(0.97)PPINGSDSILGTR GS(-108.93)T(-109.49)S(-97.82)S(-91.51)S(-84.42)PY(-114.59)VAAS(-15.08)HT(15.08)PPINGS(-62.89)DS(-79.63)ILGT(-115.33)R 0 0 1 0 Q99081 Q99081 Q99081 TCF12 Transcription factor 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 990.483032226563 3 913.758899 2738.25487 31818.0485324417 1.7298 0.0015806 83597 76.388 83599 76.389 990.48141383174 66.82 0.65982 66.82 66.345 67.005 0 63 22 5 0.975956786819591 0.00199836234581418 0.0671388587838579 8.8806E-12 1 15683 193.97 177.04 11 14095000 3558.6 4261 3840.1 4471.8 4755.1 4386 8512.1 6173 4347.3 15773 3368.4 4026.4 3868.9 4577.3 4820.6 4452.2 8370.1 6598 4466.1 14995 1 1 1 1 1 1 1 1 1 1 1870 1761 1643 1731 2083 2083 4743 GSVLIPGLVEGSTKR 15 Phospho (STY) _GSVLIPGLVEGS(ph)TKR_ GSVLIPGLVEGS(0.933)T(0.067)KR GS(-61.86)VLIPGLVEGS(11.46)T(-11.46)KR 0 0 1 1 Q86WJ1 Q86WJ1 Q86WJ1 CHD1L Chromodomain-helicase-DNA-binding protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.392211914063 3 531.618434 1591.83347 39098.3110840283 2.0555 0.0010927 287380 152.77 287380 152.78 684.393374229614 82.231 0.48819 82.231 81.97 82.458 0 40 16 3 0.58609111437023 0.00167556912786868 0.0438089455151875 0.01408 1 19230 68.168 46.611 3 8067200 9977.2 3358.3 10133 3235.9 5249 10871 5566.9 5857 4346.6 7681.4 9441.6 3171.8 10136 3452.7 5618.5 10507 5617.9 6300.7 4340.5 7368.5 1 1 1 1 1 1 1 1 1 1 1871 1390 1644 1732 2084 2084 2528 GSVPLSSSPPATHFPDETEITNPVPK 26 Phospho (STY) _GSVPLSS(ph)SPPATHFPDETEITNPVPK_ GS(0.001)VPLS(0.108)S(0.488)S(0.38)PPAT(0.023)HFPDETEITNPVPK GS(-25.7)VPLS(-6.54)S(1.09)S(-1.09)PPAT(-13.36)HFPDET(-44.15)EIT(-105.91)NPVPK 0 0 1 0 P11388 P11388 P11388 TOP2A DNA topoisomerase 2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.418884277344 4 696.833653 2783.30551 34407.5888715802 1.6477 0.0011481 164430 114.58 164430 114.58 811.666450921027 81.329 1.1888 81.329 80.752 81.941 0 200 40 7 0.930021923094812 0.00201857577782273 0.0250689000866001 6.6558E-08 1 18943 159.81 116.2 7 206160000 4770.4 9581.6 6239.2 7510.3 3839.9 5394.1 4224.4 7731.4 7025.4 9892 4519.6 9039.6 6169.4 7803.8 4046.5 5549.1 4358.3 7962.7 6813.2 9493.5 1 1 1 1 1 1 1 1 1 1 1872 363 1645 1733 2085 2085 591 GSVSDEEMMELR 12 2 Oxidation (M),Phospho (STY) _GS(ph)VSDEEM(ox)M(ox)ELR_ GSVSDEEM(1)M(1)ELR GS(1)VSDEEMMELR GSVSDEEM(92.65)M(92.65)ELR GS(37.45)VS(-37.45)DEEMMELR 0 2 1 0 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.362487792969 2 747.778039 1493.54153 33673.34950365 1.5452 0.0011555 153230 114.58 153230 114.58 862.35994272397 43.263 0.66707 43.263 42.855 43.522 -7.1054E-15 62 22 4 0.840753670764726 0.000543205597886779 0.010516321642806 0.0040613 1 9854 92.65 75.41 2 25622000 22178 8314.5 19803 8246 8911.6 22844 9238.8 12841 9405.8 7726.6 20977 7854 19944 8705.5 9691.4 22135 9393.1 13501 9273.6 7572.7 1 1 1 1 1 1 1 1 1 1 1873 380 1646 1734 2086 2086 48;49 615 GSVSDEEMMELR 12 Oxidation (M),Phospho (STY) _GS(ph)VSDEEM(ox)MELR_ GSVSDEEM(0.998)M(0.002)ELR GS(0.962)VS(0.038)DEEMMELR GSVSDEEM(27.82)M(-27.82)ELR GS(14)VS(-14)DEEMMELR 0 1 1 0 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.361389160156 2 739.780582 1477.54661 34427.6556554568 0.95928 0.00070966 154880 114.58 154890 114.58 854.361699990599 54.579 1.4147 54.579 54.268 55.683 0 136 48 5 0.915626841821974 0.00158803164190396 0.00962060873567078 2.9625E-11 1 12713 203.8 184.44 4 143720000 78645 13367 74981 16208 12755 78271 16605 36265 15096 24282 74405 12643 74958 17465 16670 75204 16677 38736 14960 23704 1 1 1 1 1 1 1 1 1 1 1874 380 1646 1735 2087 2087 48;49 615 GSVSDEEMMELR 12 Oxidation (M),Phospho (STY) _GS(ph)VSDEEMM(ox)ELR_ GSVSDEEM(0.004)M(0.996)ELR GS(0.952)VS(0.048)DEEMMELR GSVSDEEM(-23.89)M(23.89)ELR GS(12.98)VS(-12.98)DEEMMELR 0 1 1 0 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.361999511719 2 739.780582 1477.54661 33866.9299748813 1.4614 0.0010811 154890 114.58 154890 114.58 854.361812954813 58.075 1.6287 58.075 57.589 59.218 0 188 55 6 0.98800890743401 0.00309326959047629 0.0355202381352307 2.3158E-07 2 13550 161.2 137.73 4 167750000 70417 29455 76357 33319 23257 81618 27842 45289 28669 35941 66655 27848 75904 34751 26802 79266 28144 47919 28252 34891 2 2 2 2 2 2 2 2 2 2 1875 380 1646 1735 2088;2089 2088 48;49 615 GSVSDEEMMELR 12 Oxidation (M),Phospho (STY) _GS(ph)VSDEEMM(ox)ELR_ GSVSDEEM(0.262)M(0.738)ELR GS(0.991)VS(0.009)DEEMMELR GSVSDEEM(-4.51)M(4.51)ELR GS(20.31)VS(-20.31)DEEMMELR 0 1 1 0 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.361572265625 2 739.780582 1477.54661 35146.5615075779 1.6993 0.0012571 154880 114.58 154890 114.58 854.360024854316 67.585 0.79668 67.585 67.09 67.887 0 39 26 2 NaN 0 0 0.016019 1 15858 68.121 54.613 4 6253200 10005 7579.3 10269 7715.7 7761.4 10509 7123.8 8759.3 7039.8 17613 9468.1 7160.6 10293 7958.7 8015.2 10420 7279.8 9384.7 6949.8 16787 1 1 1 1 1 1 1 1 1 1 1876 380 1646 1735 2090 2090 48;49 615 GSVSDEEMMELR 12 Unmodified _GSVSDEEMMELR_ 0 0 0 0 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.382873535156 2 691.799959 1381.58537 34721.5722564734 2.2077 0.0015273 165630 114.58 165630 114.58 806.380352178854 63.864 0.45843 63.864 63.662 64.12 7.1054E-15 37 15 3 0.848301040879454 0.000602575033366185 0.0143636971626581 0.00040806 1 15004 120.06 83.505 1 10316000 20234 15652 20267 15625 16145 19574 16392 16572 14364 14808 19146 14786 20356 16108 16629 19434 16619 17185 14259 14327 1 1 1 1 1 1 1 1 1 1 1877 380 1646 1736 2091 2091 GSVSDEEMMELR 12 Phospho (STY) _GS(ph)VSDEEMMELR_ GS(0.979)VS(0.021)DEEMMELR GS(16.78)VS(-16.78)DEEMMELR 0 0 1 0 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.365600585938 2 731.783125 1461.5517 34088.5268702028 1.6081 0.0011768 156580 114.58 156580 114.58 846.364970618775 69.918 3.7789 69.918 69.234 73.013 0 434 129 6 0.948819043227131 0.00335976722835379 0.0141897243630662 2.6528E-52 4 16524 365.93 308.64 2 790710000 236270 50387 250250 55467 49635 246840 56995 122410 53905 96809 223620 47627 248740 59717 62316 237500 57578 130520 53319 93990 4 4 4 4 4 4 4 4 4 4 1878 380 1646 1737 2092;2093;2094;2095 2093 615 GSVSQPSTPSPPKPTGIFQTSANSSFEPVK 30 Phospho (STY) _GSVSQPSTPS(ph)PPKPTGIFQTSANSSFEPVK_ GSVSQPS(0.02)T(0.154)PS(0.825)PPKPTGIFQTSANSSFEPVK GS(-49.53)VS(-34.48)QPS(-16.05)T(-7.3)PS(7.3)PPKPT(-35.91)GIFQT(-83.27)S(-100.33)ANS(-119.5)S(-125.62)FEPVK 0 0 1 1 O15027 O15027 O15027 SEC16A Protein transport protein Sec16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 957.756286621094 4 785.630045 3138.49107 32321.3772677829 1.7382 0.0013656 218770 171.87 218770 171.87 957.751318938061 83.796 0.57181 83.796 83.585 84.157 1.4211E-14 54 19 4 0.714767318370916 0.00163413846703318 0.026928564079037 9.307E-12 1 19602 185.28 173.75 10 9963200 4634.1 3847.1 5323.2 3487.5 4461.6 4104.2 4782.8 4600.3 3531.6 17136 4387.6 3632.2 5310.6 3612.7 4581.8 4124.8 4818.8 5111.6 3537.7 16242 1 1 1 1 1 1 1 1 1 1 1879 75 1647 1738 2096 2096 129 GSYGDLGGPIITTQVTIPK 19 Phospho (STY) _GS(ph)YGDLGGPIITTQVTIPK_ GS(1)YGDLGGPIITTQVTIPK GS(81.69)Y(-81.69)GDLGGPIIT(-133.71)T(-162.32)QVT(-212.82)IPK 0 0 1 0 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.452026367188 3 666.337884 1995.99182 34850.6740014376 2.1772 0.0014507 229280 152.78 229280 152.78 819.44782740173 96.891 2.1126 96.891 96.519 98.632 0 273 72 6 0.967132190962566 0.00599135652289591 0.0317964069153154 3.6277E-17 2 22477 248.46 222.02 5 90183000 8534 9337.2 9783.5 9053.6 12990 8070.5 14406 11612 9597.5 49819 8080 8818.9 9821.5 9297.4 13008 8271.5 14464 13012 9673.8 47179 2 2 2 2 2 2 2 2 2 2 1880 752 1648 1739 2097;2098 2097 1239 GSYRGGSISVQVNSIK 16 Phospho (STY) _GS(ph)YRGGSISVQVNSIK_ GS(1)YRGGSISVQVNSIK GS(46.92)Y(-46.92)RGGS(-47.06)IS(-47.35)VQVNS(-128.25)IK 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 730.728332519531 3 577.952364 1730.83526 36381.6738568554 1.9252 0.0011127 264340 152.77 264340 152.78 730.727332155425 65.049 0.63181 65.049 64.822 65.454 0 55 21 4 0.944628121761668 0.00203833699575113 0.0275640083814013 1.3682E-10 1 15282 180.44 107.41 5 17211000 7339.4 9102.2 7513.7 7399.3 9914.3 6791 8889 10525 8077.4 47345 6945.6 8588.8 7583.3 7691.5 9904.1 6970 9075.2 11839 8004.4 44825 1 1 1 1 1 1 1 1 1 1 1881 1035 1649 1740 2099 2099 1781 GTDDLNPVTSTPAKPSSPPPEFSFNTPGK 29 Phospho (STY) _GTDDLNPVTSTPAKPSS(ph)PPPEFSFNTPGK_ GTDDLNPVTSTPAKPS(0.164)S(0.836)PPPEFSFNTPGK GT(-114.13)DDLNPVT(-56.86)S(-47.92)T(-47.92)PAKPS(-7.08)S(7.08)PPPEFS(-51.2)FNT(-67.58)PGK 0 0 1 1 Q6NXT4 Q6NXT4 Q6NXT4 SLC30A6 Zinc transporter 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 939.233642578125 4 767.108946 3064.40668 32879.8455704629 1.8495 0.0014188 224050 171.87 224050 171.87 939.483364725015 83.006 0.49429 83.006 82.739 83.233 0 46 16 4 0.952850393999169 0.00123864129037898 0.00475897692482761 2.3075E-09 1 19414 175.69 156.72 8 9859500 4526.8 5285 5610.8 5409.9 3079.1 4973.9 3214.7 4575.6 5653 14982 4287.6 4993.2 5556.7 5540.1 3278.3 5028.2 3332.5 5056.6 5474.4 14213 1 1 1 1 1 1 1 1 1 1 1882 1249 1650 1741 2100 2100 2211 GTDTQTPAVLSPSK 14 Phospho (STY) _GTDTQTPAVLS(ph)PSK_ GTDTQTPAVLS(0.999)PS(0.001)K GT(-102.66)DT(-97.18)QT(-76.87)PAVLS(28.79)PS(-28.79)K 0 0 1 0 P46087 P46087 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.344970703125 3 494.567628 1480.68105 38588.6822088195 1.9879 0.00098317 308910 152.77 308910 152.78 647.342596064958 56.748 0.99706 56.748 56.308 57.305 0 125 33 6 0.811954350446105 0.00817957905624784 0.249343758557036 8.5726E-07 1 13208 139.81 119.43 5 304240000 22371 23210 21620 20655 14258 21909 16739 22416 26518 5421.6 21166 21911 21727 21384 14948 21921 17188 22628 25751 5623.9 1 1 1 1 1 1 1 1 1 1 1883 606 1651 1742 2101 2101 999 GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK 31 Unmodified _GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK_ 0 0 0 1 Q13177 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.983947753906 5 663.915804 3314.54264 36242.5792273159 1.4421 0.00095745 138070 91.665 138070 91.666 755.781870928085 62.717 0.4124 62.717 62.461 62.874 0 48 13 5 0.929330661955381 0.00142361610114987 0.0172000823149983 7.3412E-05 1 14704 113.65 102.84 1 12872000 5894.1 6568.8 6638.5 6168.5 7372.2 6111.7 7709.5 7369.1 6474.8 13975 5580.1 6203 6651.4 6357.1 7441.6 6170.7 7797.6 7764.1 6441 13329 1 1 1 1 1 1 1 1 1 1 1884 933 1652 1743 2102 2102 GTEFAESADAALQGDPALQDAGDSSR 26 Unmodified _GTEFAESADAALQGDPALQDAGDSSR_ 0 0 0 0 P04921 P04921 P04921 GYPC Glycophorin-C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 937.1123046875 3 860.387921 2578.14193 32952.0738527972 1.9344 0.0016643 88783 76.387 88785 76.389 937.443692222381 77.77 0.52113 77.77 77.487 78.008 -1.4211E-14 46 17 4 0.97912156898941 0.00382359918513962 0.0214413310145813 4.4063E-12 1 18227 197.33 147.34 1 17035000 3429 4136.9 3685.2 4817 5879.4 4329.2 4339.6 5630.4 5783.5 18605 3245.6 3911.8 3720.1 4896.6 5816.5 4412.5 4530.8 6157.9 5645.3 17650 1 1 1 1 1 1 1 1 1 1 1885 298 1653 1744 2103 2103 GTEFAESADAALQGDPALQDAGDSSRKEYFI 31 Phospho (STY) _GTEFAESADAALQGDPALQDAGDS(ph)SRKEYFI_ GTEFAESADAALQGDPALQDAGDS(0.5)S(0.5)RKEYFI GT(-195.75)EFAES(-174.4)ADAALQGDPALQDAGDS(0)S(0)RKEY(-99.98)FI 0 0 1 2 P04921 P04921 P04921 GYPC Glycophorin-C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 950.708129882813 4 835.622683 3338.46163 31928.7539157386 1.4208 0.0011872 137120 114.58 137120 114.58 950.70627402525 99.051 0.37292 99.051 98.891 99.264 0 33 12 5 0.947709970430352 0.0123236044758274 0.249293705612 8.9209E-13 1 22996 209.42 175.86 5 73445000 4621 5995.9 4070.7 5882.2 5628.2 4007.9 6953.8 6402.8 5192.2 112200 4370.6 5663.5 4152.2 6016.5 5636.6 4342.3 6966.5 9710.6 5197.8 105800 1 1 1 1 1 1 1 1 1 1 1886 298 1654 1745 2104 2104 489;490 GTGASGSFK 9 Phospho (STY) _GTGASGS(ph)FK_ GTGAS(0.001)GS(0.999)FK GT(-71.95)GAS(-32.27)GS(32.27)FK 0 0 1 0 P16403;P22492;P10412;P16401;P16402;Q02539 P16403;P10412;P16401;P16402;Q02539 P16401 HIST1H1C;HIST1H1T;HIST1H1E;HIST1H1B;HIST1H1D;HIST1H1A Histone H1.2;Histone H1t;Histone H1.4;Histone H1.5;Histone H1.3;Histone H1.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.348205566406 2 446.184033 890.353512 37446.3306193852 1.9103 0.00085233 513610 229.16 513610 229.16 675.347352984111 43.259 1.0248 43.259 42.969 43.994 0 119 34 6 0.997451427428616 0.0416092364026597 1 8.0658E-05 1 9887 134.73 94.807 3 743750000 610010 642370 636050 607560 351200 615160 357340 529020 656110 0 577320 606630 635490 626070 373590 615170 371620 533830 634710 7703.6 1 1 1 1 1 1 1 1 1 0 1887 353;407;409;408;851 1655 1746 2105 2105 575 GTGASGSFK 9 Phospho (STY) _GTGASGS(ph)FK_ GTGAS(0.236)GS(0.764)FK GT(-60.42)GAS(-5.09)GS(5.09)FK 0 0 1 0 P16403;P22492;P10412;P16401;P16402;Q02539 P16403;P10412;P16401;P16402;Q02539 P16401 HIST1H1C;HIST1H1T;HIST1H1E;HIST1H1B;HIST1H1D;HIST1H1A Histone H1.2;Histone H1t;Histone H1.4;Histone H1.5;Histone H1.3;Histone H1.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.348022460938 2 446.184033 890.353512 37595.4419091576 2.37 0.0010574 513610 229.16 513610 229.16 675.347086864635 46.855 0.5477 46.855 46.602 47.15 0 43 18 3 0.998301803763585 0.00361379640574993 0.0373730474530003 1.5436E-06 1 10839 169.58 129.19 3 42755000 55799 65170 57777 60865 34085 63448 32283 50981 66268 13171 52808 61539 57771 62798 35995 63350 33878 52017 63945 13582 1 1 1 1 1 1 1 1 1 1 1888 353;407;409;408;851 1655 1746 2106 2106 575 GTGDSLRESK 10 Phospho (STY) _GTGDS(ph)LRESK_ GT(0.002)GDS(0.998)LRESK GT(-28.15)GDS(28.15)LRES(-54.16)K 0 0 1 1 Q05519 Q05519 Q05519 SRSF11 Serine/arginine-rich splicing factor 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.943664550781 3 377.167687 1128.48123 43127.3969567462 0.44906 0.00016937 405060 152.78 405060 152.78 529.943379211546 34.794 0.34169 34.794 34.633 34.975 0 27 11 3 0.923558631734064 0.00289353955600404 0.0491352763446156 0.0067395 1 7803 79.875 48.877 3 19953000 20535 17430 20131 16858 23678 21755 20800 21471 20322 2443.4 19430 16462 20332 17423 23777 21589 21298 21622 20072 2797.7 1 1 1 1 1 1 1 1 1 1 1889 870 1656 1747 2107 2107 1410 GTLSDSEIETNSATSTIFGK 20 Phospho (STY) _GTLS(ph)DSEIETNSATSTIFGK_ GT(0.042)LS(0.949)DS(0.009)EIETNSATSTIFGK GT(-13.56)LS(13.56)DS(-20.26)EIET(-115.77)NS(-160.89)AT(-189.42)S(-188.39)T(-196.59)IFGK 0 0 1 0 Q8WXG6 Q8WXG6 Q8WXG6 MADD MAP kinase-activating death domain protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.434143066406 3 713.32274 2136.94639 33812.389708546 1.8976 0.0013536 214180 152.78 214180 152.78 866.434228824863 90.638 0.69176 90.638 90.392 91.084 0 70 23 4 0.880877951474806 0.00167662937737098 0.0369440346579095 3.65E-16 1 21112 218.81 198.97 8 14475000 5818.2 7417.8 6255.8 8663.7 4640 6402.9 3857.7 7256.8 8316.6 18869 5507.1 7014.5 6252.8 8783.2 4797.2 6565.1 4086.5 7814.5 8016.9 17935 1 1 1 1 1 1 1 1 1 1 1890 1581 1657 1748 2108 2108 2907 GTPGGGGPRPPSPR 14 Phospho (STY) _GTPGGGGPRPPS(ph)PR_ GTPGGGGPRPPS(1)PR GT(-34.75)PGGGGPRPPS(34.75)PR 0 0 1 1 Q8TAP9 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.605712890625 3 457.217264 1368.62996 42522.9185615553 1.3087 0.00059838 167070 76.389 167080 76.39 533.605682433054 30.835 0.98746 30.835 30.194 31.181 0 73 32 3 0.732559812150686 0.00233746812806735 0.0923183266535832 0.043745 1 6879 43.794 13.736 2 14413000 12738 12447 11060 13238 18503 11937 19253 17116 13453 2236 12048 11763 11326 13524 18343 12092 19403 17035 13520 2501.6 1 1 1 1 1 1 1 1 1 1 1891 1533 1658 1749 2109 2109 2817 GTPPPVFTPPLPK 13 Phospho (STY) _GT(ph)PPPVFTPPLPK_ GT(1)PPPVFTPPLPK GT(69.47)PPPVFT(-69.47)PPLPK 0 0 1 0 Q6NZY4 Q6NZY4 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.35888671875 3 476.582661 1426.72615 39665.4424539699 1.9622 0.00093513 320560 152.78 320570 152.78 629.357709123695 90.628 0.98278 90.628 90.101 91.084 0 128 33 5 0.809362313402516 0.00445165114016329 0.152806627446607 2.2317E-05 1 21058 135.72 104.3 2 43804000 6104.4 7023.4 6015.9 5363.7 4784.4 6455 5345.3 6222.1 6883.2 12665 5776 6625.3 6048.7 5626.1 4937.3 6442.4 5456.2 6631.9 6726.4 12069 1 1 1 1 1 1 1 1 1 1 1892 1251 1659 1750 2110 2110 4619 GTPSQSPVVGR 11 Phospho (STY) _GTPSQS(ph)PVVGR_ GTPS(0.001)QS(0.999)PVVGR GT(-60.22)PS(-29.48)QS(29.48)PVVGR 0 0 1 0 P52594 P52594 P52594 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.356872558594 2 582.774077 1163.5336 36923.1075250655 1.8083 0.0010538 196610 114.58 196620 114.58 697.355815221398 33.737 0.52569 33.737 33.497 34.022 0 50 17 4 0.961611453275418 0.00850511935637862 0.299384171032539 2.7473E-07 1 7555 168.76 120.69 3 79133000 67500 41416 67331 43292 29830 73390 36504 44417 44018 2823.7 63871 39135 67361 44820 32587 71862 37044 45761 43114 3686.8 1 1 1 1 1 1 1 1 1 1 1893 693 1660 1751 2111 2111 1163 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 Phospho (STY) _GTQEVAPPTPLTPTSHT(ph)ANTSPRPVSGMER_ GTQEVAPPTPLTPT(0.003)S(0.011)HT(0.384)ANT(0.277)S(0.277)PRPVS(0.048)GMER GT(-102.3)QEVAPPT(-57.24)PLT(-36.56)PT(-20.56)S(-15.5)HT(1.43)ANT(-1.43)S(-1.43)PRPVS(-9)GMER 0 0 1 1 P48730 P48730 P48730 CSNK1D Casein kinase I isoform delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 857.423828125 4 799.882774 3195.50199 33215.9524423446 1.2745 0.0010195 71623 57.29 71625 57.291 857.674736664447 55.914 0.35497 55.914 55.801 56.156 0 31 11 4 0.919234515788772 0.000712837755139478 0.00723566890760277 3.3659E-05 1 13089 124.45 105.2 9 19273000 5156.8 5808.4 5509.4 5446.7 5194.9 4806.9 6194.9 5145.4 5876.3 8857.9 4880.9 5485 5525.4 5604.3 5304.2 4867.7 6249.2 5415 5811.7 8459.9 1 1 1 1 1 1 1 1 1 1 1894 629 1661 1752 2112 2112 4469 GTSFDAAATSGGSASSEK 18 Phospho (STY) _GT(ph)SFDAAATSGGSASSEK_ GT(0.567)S(0.433)FDAAATSGGSASSEK GT(1.18)S(-1.18)FDAAAT(-45.98)S(-66.17)GGS(-87.73)AS(-96.26)S(-100.44)EK 0 0 1 0 P13804 P13804 P13804 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.011413574219 3 570.899994 1709.67815 36728.2257354114 2.3006 0.0013134 267600 152.78 267610 152.78 723.674826447311 51.09 0.4602 51.09 50.852 51.312 7.1054E-15 45 15 4 0.969863817235597 0.00141346900617946 0.0203401050880056 3.4284E-05 1 11901 127.1 114.54 7 10355000 11339 10082 11159 10145 25084 10712 27489 16263 11674 12967 10729 9524.2 11422 10422 24652 10806 27433 16488 12190 12587 1 1 1 1 1 1 1 1 1 1 1895 381 1662 1753 2113 2113 4395 GTSKTDSK 8 Phospho (STY) _GTS(ph)KTDSK_ GT(0.017)S(0.98)KT(0.003)DSK GT(-17.66)S(17.66)KT(-24.63)DS(-77.59)K 0 0 1 1 O75494 O75494 O75494 SRSF10 Serine/arginine-rich splicing factor 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.962524414063 3 301.798824 902.374642 43055.8469803155 2.1229 0.00064069 759320 229.16 759330 229.16 530.961965379407 31.036 0.57021 31.036 30.787 31.358 -3.5527E-15 60 18 5 0.990775451760513 0.00760223112713018 0.136896585648007 3.1055E-05 1 6913 138.24 107.01 4 96089000 27506 29974 27231 29759 23816 25928 24531 27248 31214 2383.8 26027 28314 27395 30507 24386 26181 25119 27352 30516 2875.2 1 1 1 1 1 1 1 1 1 1 1896 189 1663 1754 2114 2114 329 GTSPSSSSRPQR 12 Phospho (STY) _GTS(ph)PSSSSRPQR_ GT(0.006)S(0.991)PS(0.001)SSSRPQR GT(-21.91)S(21.91)PS(-28.32)S(-35.38)S(-35.38)S(-35.38)RPQR 0 0 1 1 Q8N1F7 Q8N1F7 Q8N1F7 NUP93 Nuclear pore complex protein Nup93 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.376037597656 2 663.79353 1325.57251 35192.996306553 2.077 0.0013787 172620 114.58 172620 114.58 778.374911620165 20.953 0.20407 20.953 20.822 21.026 -3.5527E-15 16 6 3 0.974890461795599 0.00296353569141688 0.0475707180333544 0.0011467 1 4740 99.5 78.036 6 3343200 1816.6 1389.7 1817.2 1899.5 1618 1808.6 1260.5 2037.2 2204.1 0 1718.9 1315.7 1826.6 1917.8 1649.6 1819.8 1326.1 2034.6 2134.8 0 1 1 1 1 1 1 1 1 1 0 1897 1453 1664 1755 2115 2115 2690 GTTATSAQANSTPTSVASVVTSAESPASR 29 Phospho (STY) _GTTATSAQANSTPTSVASVVTSAES(ph)PASR_ GTTATSAQANSTPTSVASVVTSAES(0.962)PAS(0.038)R GT(-174.93)T(-171.96)AT(-165.66)S(-161.83)AQANS(-141.64)T(-136.17)PT(-126.49)S(-110.13)VAS(-76.77)VVT(-52.19)S(-41.17)AES(14.04)PAS(-14.04)R 0 0 1 0 Q86YP4 Q86YP4 Q86YP4 GATAD2A Transcriptional repressor p66-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1016.49456787109 3 939.436373 2815.28729 30942.8772155942 0.70938 0.00066642 81313 76.388 81313 76.389 1016.1586681346 65.945 0.62735 65.945 65.573 66.2 0 80 20 5 0.978511222900764 0.00447960946064824 0.0461966968943415 2.7483E-12 1 15450 204.48 184.05 13 65089000 2514.6 3482.7 3033.9 3613.9 2392 3103 2783.3 3398.2 3639.6 8767.5 2381.4 3290.7 3018 3694.4 2471.7 3153.3 2837.8 3661.3 3554.8 8334.3 1 1 1 1 1 1 1 1 1 1 1898 1402 1665 1756 2116 2116 2543 GTYVPSSPTR 10 Phospho (STY) _GTYVPSS(ph)PTR_ GTYVPSS(1)PTR GT(-125.71)Y(-152.4)VPS(-39.06)S(38.57)PT(-38.57)R 0 0 1 0 Q9Y4P8 Q9Y4P8 Q9Y4P8 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.335571289063 2 572.755353 1143.49615 37795.5124520872 1.5533 0.00088964 200050 114.58 200050 114.58 687.336732951754 41.095 0.5954 41.095 40.829 41.424 0 70 20 5 0.974816587477611 0.00453869174885286 0.0603443328986306 7.6486E-10 1 9338 200.27 162.93 5 180380000 37961 47911 36930 46859 37973 42718 36349 39908 52196 5996 35917 45253 37255 48111 38466 42979 37513 40320 50829 6569.6 1 1 1 1 1 1 1 1 1 1 1899 2284 1666 1757 2117 2117 4224 GVEEEEEDGEMRE 13 Oxidation (M) _GVEEEEEDGEM(ox)RE_ GVEEEEEDGEM(1)RE GVEEEEEDGEM(83.88)RE 0 1 0 1 P62306 P62306 P62306 SNRPF Small nuclear ribonucleoprotein F MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 892.387268066406 2 777.299032 1552.58351 33237.5708517686 1.7768 0.0013811 147410 114.58 147410 114.58 892.385501800853 31.563 0.46379 31.563 31.358 31.821 -3.5527E-15 26 15 2 0.956096650098726 0.000558443681177681 0.0126797824610724 0.0083172 1 7050 83.883 70.665 1 9903800 7188.7 7210.1 8124.6 7887.9 9615.6 8731 8849.3 8707 7861.8 1274.3 6805.9 6815 8144 8071.3 9658.1 8716 9017.6 8773 7799.2 1401.4 1 1 1 1 1 1 1 1 1 1 1900 761 1667 1758 2118 2118 101 GVEEEEEDGEMRE 13 Unmodified _GVEEEEEDGEMRE_ 0 0 0 1 P62306 P62306 P62306 SNRPF Small nuclear ribonucleoprotein F MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 884.385070800781 2 769.301575 1536.5886 33628.7846010451 1.9705 0.0015159 148940 114.58 148940 114.58 883.88303881479 39.253 0.52116 39.253 38.991 39.512 0 59 17 4 0.981475775227911 0.00228002542902994 0.0672157574801076 5.2198E-16 1 8886 223.87 193.54 1 55253000 24715 27283 27956 30021 33952 26405 37085 31469 32064 4961.2 23399 25789 28043 30600 34140 26701 37462 31519 31850 5399.9 1 1 1 1 1 1 1 1 1 1 1901 761 1667 1759 2119 2119 GVEPSPSPIKPGDIKR 16 Phospho (STY) _GVEPSPS(ph)PIKPGDIKR_ GVEPS(0.345)PS(0.655)PIKPGDIKR GVEPS(-2.79)PS(2.79)PIKPGDIKR 0 0 1 2 Q92890 Q92890 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 612.104187011719 4 439.980289 1755.89205 39928.7246782673 1.8006 0.00079225 390640 171.87 390640 171.87 612.103216448412 56.637 0.3851 56.637 56.367 56.752 0 40 12 5 0.891604827870662 0.00246654881830525 0.0734296005573322 0.0068112 1 13232 83.065 69.16 2 14644000 8316.1 13427 8654.1 12518 7229.9 9616.7 7438.9 10007 12996 2589.3 7870.4 12679 8677.7 12862 7429.2 9778.5 7714.3 10101 12587 2669.7 1 1 1 1 1 1 1 1 1 1 1902 1629 1668 1760 2120 2120 3012 GVGDDQLGEESEERDDHLLPM 21 Unmodified _GVGDDQLGEESEERDDHLLPM_ 0 0 0 1 P20645 P20645 P20645 M6PR Cation-dependent mannose-6-phosphate receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 857.403442382813 3 781.013138 2340.01758 34690.4796639145 2.0492 0.0016004 97805 76.387 97807 76.388 857.734406399038 74.194 0.37495 74.194 73.983 74.358 0 35 12 4 0.941715845521593 0.00102584862435433 0.0276931363413538 0.00016187 1 17397 104.06 84.217 1 11138000 7227.7 6771.8 7543.2 8888.8 9906.4 8148 8491.2 8663.5 7437 21050 6840.5 6409.2 7603.7 8985.6 9892.5 8246.3 8682.4 9304.4 7382.8 20022 1 1 1 1 1 1 1 1 1 1 1903 447 1669 1761 2121 2121 GVGDGTVSWGLEDDEDMTLTR 21 Unmodified _GVGDGTVSWGLEDDEDMTLTR_ 0 0 0 0 Q15819;Q13404 Q15819 Q15819 UBE2V2;UBE2V1 Ubiquitin-conjugating enzyme E2 variant 2;Ubiquitin-conjugating enzyme E2 variant 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.393676757813 3 751.670712 2251.99031 33874.1441421616 1.8164 0.0013653 101620 76.387 101620 76.388 828.392098250244 86.971 0.5894 86.971 86.732 87.322 0 85 19 6 0.983453963717211 0.00469228418188491 0.0462897768759947 3.8753E-05 1 20319 120.15 101.56 1 31990000 8772.1 12328 11012 13435 8920 9217.6 13958 13509 14675 17349 8309 11652 10943 13659 9247.4 9514 13986 13907 14450 16648 1 1 1 1 1 1 1 1 1 1 1904 948 1670 1762 2122 2122 GVGSPEPGPTAPYLGR 16 Phospho (STY) _GVGS(ph)PEPGPTAPYLGR_ GVGS(0.997)PEPGPT(0.003)APYLGR GVGS(25.49)PEPGPT(-25.49)APY(-69.16)LGR 0 0 1 0 Q9C0B5 Q9C0B5 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 932.968078613281 2 817.882345 1633.75014 33108.9992340938 2.0165 0.0016493 140090 114.58 140100 114.58 932.965169716299 64.871 0.39892 64.871 64.684 65.082 0 33 13 4 0.980814064511808 0.000757207754614598 0.0138091278342955 6.2491E-05 1 15236 128.22 95.725 3 12020000 11715 6427.6 12332 7947.6 6444.6 12572 7086.3 11304 8213.1 16717 11087 6080.6 12312 8141.9 6897.7 12410 7213.3 11891 8056.1 16002 1 1 1 1 1 1 1 1 1 1 1905 1884 1671 1763 2123 2123 3428 GVHIHQAGGSPPASSTSSSSLTNDVAK 27 Phospho (STY) _GVHIHQAGGS(ph)PPASSTSSSSLTNDVAK_ GVHIHQAGGS(0.531)PPAS(0.028)S(0.028)T(0.156)S(0.052)S(0.073)S(0.102)S(0.025)LT(0.004)NDVAK GVHIHQAGGS(5.32)PPAS(-12.84)S(-12.84)T(-5.32)S(-10.06)S(-8.62)S(-7.15)S(-13.25)LT(-20.8)NDVAK 0 0 1 0 Q8N122 Q8N122 Q8N122 RPTOR Regulatory-associated protein of mTOR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.646484375 4 668.813252 2671.2239 36128.6001463832 1.8169 0.0012151 171320 114.58 171320 114.58 783.895856016494 51.078 0.49131 51.078 50.852 51.343 0 36 16 3 0.580643725317598 0.00123938221064649 0.0167756651317039 0.00055842 1 11888 100.04 79.783 9 14242000 9060.5 9726.8 9442.7 8169.7 9539.5 11211 13005 11941 10477 18016 8575 9179.7 9494 8532.3 9721.6 11145 13003 12492 10445 17240 1 1 1 1 1 1 1 1 1 1 1906 1450 1672 1764 2124 2124 2685 GVNTFSPEGR 10 Phospho (STY) _GVNTFS(ph)PEGR_ GVNT(0.008)FS(0.992)PEGR GVNT(-20.93)FS(20.93)PEGR 0 0 1 0 P28066 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.826477050781 2 572.245153 1142.47575 37623.4912033491 1.3078 0.00074838 200230 114.58 200230 114.58 687.326134184639 47.739 0.63809 47.739 47.456 48.094 0 49 21 4 0.744554100032827 0.00231073065894575 0.104462816424107 0.0043103 1 11098 93.772 72.026 2 48101000 24708 33893 22207 34633 22614 25753 20569 28231 37762 8613.4 23370 32022 22506 35372 22912 26257 21507 28481 36530 8763.9 1 1 1 1 1 1 1 1 1 1 1907 493 1673 1765 2125 2125 817 GVPAGNSDTEGGQPGR 16 Phospho (STY) _GVPAGNS(ph)DTEGGQPGR_ GVPAGNS(0.737)DT(0.263)EGGQPGR GVPAGNS(4.47)DT(-4.47)EGGQPGR 0 0 1 0 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 904.413146972656 2 789.830841 1577.64713 33059.1412145901 1.8692 0.0014764 145070 114.58 145080 114.58 904.412356775607 32.661 1.0203 32.661 32.208 33.228 0 65 34 3 0.944074799739366 0.000733269477102673 0.0151109079723956 1.829E-22 1 7242 256.28 220.93 2 15797000 5146.9 7375 6287.4 7988.1 10207 6271.2 11633 8081.1 8978.1 3393.7 4874.6 6970.4 6316.1 8137 10144 6391.6 11700 8138 8971.3 3382.6 1 1 1 1 1 1 1 1 1 1 1908 2180 1674 1766 2126 2126 3930 GVPAGNSDTEGGQPGRK 17 Phospho (STY) _GVPAGNS(ph)DTEGGQPGRK_ GVPAGNS(0.887)DT(0.113)EGGQPGRK GVPAGNS(8.97)DT(-8.97)EGGQPGRK 0 0 1 1 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.365234375 3 569.587974 1705.74209 36645.4528601609 1.3101 0.00074621 268220 152.78 268220 152.78 722.363144029356 34.691 0.75221 34.691 34.459 35.211 0 63 25 4 0.873242880092769 0.00137213436792322 0.0112514144256845 3.4532E-06 1 7783 137.72 120.02 2 13276000 10014 12664 9255.6 12664 17078 9898.1 16649 13365 13098 4559 9472.9 11963 9458.4 12959 16859 10097 16871 13409 13074 4602.1 1 1 1 1 1 1 1 1 1 1 1909 2180 1675 1767 2127 2127 3930 GVSQEKEAQISSAIVSSVQSK 21 Phospho (STY) _GVS(ph)QEKEAQISSAIVSSVQSK_ GVS(1)QEKEAQISSAIVSSVQSK GVS(90.92)QEKEAQIS(-90.92)S(-107.36)AIVS(-175.25)S(-186.95)VQS(-232.68)K 0 0 1 1 Q12872 Q12872 Q12872 SFSWAP Splicing factor, suppressor of white-apricot homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 977.537048339844 3 748.036934 2241.08897 32076.3021561349 1.6526 0.0012362 306350 229.16 306350 229.16 977.534805836603 89.608 0.66353 89.608 89.263 89.927 0 83 22 5 0.853132806065261 0.000761272730051121 0.00508299165171551 1.0849E-31 1 20838 297.22 268.29 6 54966000 10177 9144.1 10149 8408.9 9133.3 9753.1 9757.6 10776 11967 31459 9630.1 8633.9 10210 8700.5 9339.4 9788 9962.9 11717 11714 29872 1 1 1 1 1 1 1 1 1 1 1910 908 1676 1768 2128 2128 1494 GVSRSPPK 8 2 Phospho (STY) _GVS(ph)RS(ph)PPK_ GVS(1)RS(1)PPK GVS(55.45)RS(55.45)PPK 0 0 2 1 Q8TAD8 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 482.582550048828 3 329.806864 986.398762 44883.7060713481 0.76536 0.00025242 463230 152.78 463230 152.78 482.581873844179 33.394 2.1376 33.394 32.413 34.55 0 192 73 4 0.970750830166994 0.00439063502388841 0.1302448955549 0.027085 1 7549 55.452 31.198 1 47764000 17638 18529 14868 17554 17426 17642 15085 15287 19320 3809.2 16680 17498 15157 18085 17504 17657 15584 15540 18883 3940.6 1 1 1 1 1 1 1 1 1 1 1911 1531 1677 1769 2129 2129 2810;2811 GVTIKPTVDDD 11 Unmodified _GVTIKPTVDDD_ 0 0 0 1 Q2VIR3;P41091 Q2VIR3 Q2VIR3 EIF2S3L;EIF2S3 Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.459655761719 2 580.295693 1158.57683 36183.1051145264 2.0905 0.0012131 394910 229.16 394910 229.16 809.458464940517 58.702 0.41233 58.702 58.463 58.876 0 28 13 3 0.990250001936583 0.00107618183267973 0.0208303282274843 0.00013132 1 13755 109.59 81.192 1 12881000 23683 28796 22913 30009 25467 21928 23301 26508 33525 12247 22407 27209 23144 30609 25672 22420 24103 26781 32646 12145 1 1 1 1 1 1 1 1 1 1 1912 576 1678 1770 2130 2130 GVTIPYRPKPSSSPVIFAGGQDR 23 Phospho (STY) _GVTIPYRPKPSSS(ph)PVIFAGGQDR_ GVTIPYRPKPS(0.062)S(0.062)S(0.876)PVIFAGGQDR GVT(-44.57)IPY(-90.42)RPKPS(-11.5)S(-11.5)S(11.5)PVIFAGGQDR 0 0 1 2 Q15366 Q15366 Q15366 PCBP2 Poly(rC)-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.903747558594 4 628.070432 2508.25262 35785.3863750451 1.9847 0.0012465 182430 114.58 182440 114.58 742.902782629095 72.978 0.95182 72.978 72.604 73.556 1.4211E-14 158 32 7 0.897431656062717 0.00908265233150513 0.107223521333741 1.4183E-08 1 17076 169.14 117.5 5 460630000 15997 23329 17525 24638 14655 17338 22259 17467 25519 17929 15143 22045 17538 25100 15152 17740 22382 18056 25042 17286 1 1 1 1 1 1 1 1 1 1 1913 1071 1679 1771 2131 2131 1850 GVVDSDDLPLNVSR 14 Unmodified _GVVDSDDLPLNVSR_ 0 0 0 0 P14625 P14625 P14625 HSP90B1 Endoplasmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.313659667969 3 495.922972 1484.74709 40918.3099761574 1.4895 0.0007387 154030 76.388 154030 76.388 572.645137081219 71.282 0.54437 71.282 71.032 71.576 0 44 18 3 0.921180042675613 0.00230883032342129 0.0362189583961401 7.8978E-05 1 16719 124.81 103.05 1 20962000 7676.2 6013.9 6753.5 6383.6 6163.7 6241.5 7722.1 6290.6 5768.4 4418.4 7260.2 5683.2 6849.1 6529.6 6309.9 6271.4 7732.1 6441.2 5774.5 4306 1 1 1 1 1 1 1 1 1 1 1914 389 1680 1772 2132 2132 GVVDSEDLPLNISR 14 Unmodified _GVVDSEDLPLNISR_ 0 0 0 0 P07900;P08238 P07900;P08238 P08238 HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.979125976563 2 757.39647 1512.77839 33167.6688125758 1.8916 0.0014327 151280 114.58 151280 114.58 871.975415162968 77.211 0.71959 77.211 76.912 77.632 0 82 24 5 0.9277184498348 0.00680537736898781 0.104807202664916 5.3121E-31 1 18090 361.03 0 1 104950000 34300 43082 33773 42267 29827 32423 31688 38781 42130 43303 32455 40693 33993 43290 30538 33100 32453 39958 41126 41673 1 1 1 1 1 1 1 1 1 1 1915 331;323 1681 1773 2133 2133 GVVPLAGTDGETTTQGLDGLSER 23 Unmodified _GVVPLAGTDGETTTQGLDGLSER_ 0 0 0 0 P09972 P09972 P09972 ALDOC Fructose-bisphosphate aldolase C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.104248046875 3 758.380038 2272.11828 34073.904672867 1.846 0.0014 100730 76.388 100730 76.389 835.102466412537 77.64 0.89491 77.64 77.113 78.008 0 162 30 7 0.918323445757526 0.00729467639984826 0.105972599772675 7.0064E-18 1 18117 235.5 218.82 1 340550000 6318.3 5936.4 5088.1 4691.4 5918.4 5669.2 5477.3 6233.7 5494 21722 5974.2 5600.8 5203.5 4908.7 5950.8 5686.9 5597.1 6885.5 5420.2 20598 1 1 1 1 1 1 1 1 1 1 1916 346 1682 1774 2134 2134 GVVPLAGTNGETTTQGLDGLSER 23 Unmodified _GVVPLAGTNGETTTQGLDGLSER_ 0 0 0 0 P04075 P04075 P04075 ALDOA Fructose-bisphosphate aldolase A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 834.776977539063 3 758.052033 2271.13427 33997.9156532532 1.5388 0.0011665 100770 76.389 100770 76.39 834.775554868553 75.595 0.4031 75.595 75.4 75.803 0 47 13 5 0.994211065274707 0.00504070317021031 0.220510400822174 3.59E-24 1 17734 254.26 238.98 1 29280000 5241.4 7698.2 5991.9 7106.8 6021.9 4468.1 5261 7350.6 7392.6 24651 4962.5 7268.8 5989.3 7290.7 6100.5 4679 5450.1 8004.2 7203.8 23382 1 1 1 1 1 1 1 1 1 1 1917 289 1683 1775 2135 2135 GYADSPSK 8 Phospho (STY) _GYADS(ph)PSK_ GYADS(0.997)PS(0.003)K GY(-80.59)ADS(25.35)PS(-25.35)K 0 0 1 0 Q01518 Q01518 Q01518 CAP1 Adenylyl cyclase-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.839477539063 2 452.67604 903.337528 36838.4700348991 1.8399 0.00083287 506240 229.16 506240 229.16 681.839428127121 37.732 1.0196 37.732 37.334 38.354 -7.1054E-15 111 36 4 0.993190999010937 0.010191233128074 0.121518182825381 7.031E-06 1 8521 168.29 111.37 3 256260000 119720 164690 116300 157530 143870 123320 150020 148470 178800 11373 113270 155540 117650 161630 144490 125470 153200 148290 175200 14145 1 1 1 1 1 1 1 1 1 1 1918 838 1684 1776 2136 2136 1351 GYCPAKSPK 9 Phospho (STY) _GYCPAKS(ph)PK_ GYCPAKS(1)PK GY(-43.58)CPAKS(43.58)PK 0 0 1 1 P51825 P51825 P51825 AFF1 AF4/FMR2 family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.657165527344 3 363.159587 1086.45693 40668.478532024 2.1295 0.00077335 631020 229.16 631030 229.16 592.322482025508 42.541 0.48453 42.541 42.253 42.737 0 54 16 4 0.984355097747796 0.00479846792801629 0.0550723810300616 0.00649 1 9707 80.69 42.324 2 31075000 26925 18358 30702 17973 24662 28385 27395 27106 21457 3110.1 25492 17340 30629 18645 25417 27977 27592 27333 21424 3555.8 1 1 1 1 1 1 1 1 1 1 1919 683 1685 1777 2137 2137 1148 GYPGDYTK 8 Phospho (STY) _GYPGDY(ph)TK_ GYPGDY(0.588)T(0.412)K GY(-53.88)PGDY(1.55)T(-1.55)K 0 0 1 0 P22102 P22102 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.855895996094 2 490.69169 979.368828 37091.2820341213 2.8527 0.0013998 467020 229.16 467020 229.16 719.853946565875 45.919 0.55519 45.919 45.585 46.14 0 47 18 3 0.992583816334315 0.001941773769654 0.0331241675673024 0.0025572 1 10564 97.093 37.888 3 33469000 35203 49201 38214 43987 56056 36718 59709 48614 50194 11426 33323 46449 38532 45366 55875 37300 60343 48646 49930 11884 1 1 1 1 1 1 1 1 1 1 1920 455 1686 1778 2138 2138 4873 GYSFTTTAER 10 Unmodified _GYSFTTTAER_ 0 0 0 0 P60709;P63261 P60709;P63261 P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.349304199219 2 566.767103 1131.51965 37882.4794068789 1.0535 0.00059711 202170 114.58 202170 114.58 681.348105406567 50.626 0.39791 50.626 50.394 50.791 0 22 13 2 0.557180883052589 0.000687890684000865 0.0148432490197898 0.013555 1 11758 93.938 67.336 1 14857000 23811 16815 26640 18750 24132 29809 26252 23965 18374 9993.1 22542 15895 26636 19312 24660 29331 26404 24566 18464 9964.4 1 1 1 1 1 1 1 1 1 1 1921 742;783 1687 1779 2139 2139 GYTSDSEVYTDHGRPGK 17 Phospho (STY) _GYTS(ph)DSEVYTDHGRPGK_ GYT(0.137)S(0.863)DS(0.001)EVYTDHGRPGK GY(-125.16)T(-8)S(8)DS(-31.53)EVY(-133.63)T(-80.28)DHGRPGK 0 0 1 1 Q92538 Q92538 Q92538 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 803.046875 3 650.273943 1947.8 33259.1207062479 1.7221 0.0011198 234940 152.78 234940 152.78 803.384435497225 43.649 0.50049 43.649 43.522 44.022 -7.1054E-15 48 16 4 0.990407884052795 0.00115191061902018 0.00333936224140924 5.5255E-16 1 10007 227.06 201.23 6 49772000 32011 28574 33703 25431 28641 34986 35891 34387 27770 8019.5 30297 26975 33791 26457 29459 34649 35963 34758 27745 8347.2 1 1 1 1 1 1 1 1 1 1 1922 1596 1688 1780 2140 2140 2931 GYYSPGIVSTR 11 Phospho (STY) _GYYS(ph)PGIVSTR_ GYYS(0.997)PGIVS(0.003)TR GY(-61.46)Y(-50.44)S(25.88)PGIVS(-25.88)T(-37.99)R 0 0 1 0 Q12789 Q12789 Q12789 GTF3C1 General transcription factor 3C polypeptide 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.873718261719 2 640.28956 1278.56457 NaN NaN NaN NaN NaN NaN NaN NaN 61.751 1 61.751 61.251 62.251 0 NaN NaN NaN 0.00057316 1 14489 108.68 83.832 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1923 899 1689 1781 2141 2141 1483 GYYSPYSVSGSGSTAGSR 18 Phospho (STY) _GYYSPYSVSGSGS(ph)TAGSR_ GYYSPYSVSGS(0.05)GS(0.781)T(0.084)AGS(0.084)R GY(-136.07)Y(-121.58)S(-80.99)PY(-106.3)S(-53.08)VS(-38.63)GS(-11.97)GS(9.66)T(-9.66)AGS(-9.66)R 0 0 1 0 Q15149 Q15149 Q15149 PLEC Plectin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1046.96887207031 2 931.88327 1861.75199 29901.7444726808 1.2742 0.0011874 122960 114.58 122960 114.58 1046.46483380365 57.559 0.62964 57.559 57.305 57.935 7.1054E-15 51 21 3 0.953471895948615 0.000898128410758946 0.0738502991534953 8.4346E-08 1 13448 168.64 147.98 10 14041000 11855 7074.9 14675 6191.3 5855.1 17012 6448.2 10504 7665.2 11269 11229 6678.4 14508 6584.8 6472.1 16508 6568.5 11128 7511.7 10854 1 1 1 1 1 1 1 1 1 1 1924 1061 1690 1782 2142 2142 1830 HAALCAMEVLPLALPSPPR 19 Oxidation (M),Phospho (STY) _HAALCAM(ox)EVLPLALPS(ph)PPR_ HAALCAM(1)EVLPLALPSPPR HAALCAMEVLPLALPS(1)PPR HAALCAM(65.75)EVLPLALPSPPR HAALCAMEVLPLALPS(65.75)PPR 0 1 1 0 Q9ULI0 Q9ULI0 Q9ULI0 ATAD2B ATPase family AAA domain-containing protein 2B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.413330078125 3 713.687866 2138.04177 36111.6118878789 1.8789 0.0013409 107030 76.389 107040 76.391 790.411453637324 92.14 0.94652 92.14 91.683 92.63 0 60 32 3 0.494824546605244 0.000784742849218291 0.0145949246322179 0.013841 2 21445 65.753 49.988 1 11664000 10689 10559 9078.7 10583 20064 9679.3 12124 12603 12037 52642 10108 9975 9353.8 10850 19600 9878.2 12720 14115 11881 49860 2 2 2 2 2 2 2 2 2 2 1925 2184 1691 1783 2143;2144 2143 229 3951 HAEATLGSGNLR 12 Phospho (STY) _HAEATLGS(ph)GNLR_ HAEATLGS(1)GNLR HAEAT(-34.09)LGS(34.09)GNLR 0 0 1 0 Q9H8S9;Q7L9L4 Q9H8S9 Q9H8S9 MOB1A;MOB1B MOB kinase activator 1A;MOB kinase activator 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.88330078125 2 653.300991 1304.58743 36207.9666723187 2.102 0.0013732 175390 114.58 175390 114.58 767.882538702392 38.746 0.29348 38.746 38.581 38.875 0 16 9 2 0.719992539126934 0.000439021112165623 0.0115670354133846 6.5309E-07 1 8792 139.74 110.08 2 6549200 10454 12063 11092 10691 19714 11614 18731 13892 12242 5168.8 9894.4 11388 11236 11076 19477 11638 18936 14002 12354 5188.5 1 1 1 1 1 1 1 1 1 1 1926 1961 1692 1784 2145 2145 3570 HAPSPEPAVQGTGVAGVPEESGDAAAIPAK 30 Phospho (STY) _HAPS(ph)PEPAVQGTGVAGVPEESGDAAAIPAK_ HAPS(0.998)PEPAVQGT(0.002)GVAGVPEESGDAAAIPAK HAPS(27.17)PEPAVQGT(-27.17)GVAGVPEES(-92.64)GDAAAIPAK 0 0 1 0 P13051 P13051 P13051 UNG Uracil-DNA glycosylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.432678222656 4 723.345922 2889.35458 33851.9334174948 1.7827 0.0012895 158410 114.58 158410 114.58 838.178195076624 65.517 0.49085 65.517 65.226 65.717 0 70 16 6 0.917029262370544 0.00415068956760966 0.0663864665696384 4.745E-05 1 15378 118.14 103.21 3 27623000 7782.4 6603.3 6609.5 7484.2 15491 8320.5 14778 11010 6108.8 8243.9 7359.7 6242.9 6830.2 7644.2 15178 8352 14839 11188 6395.3 8017.4 1 1 1 1 1 1 1 1 1 1 1927 374 1693 1785 2146 2146 611 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 Phospho (STY) _HAPTYTIPLS(ph)PVLSPTLPAEAPTAQVPPSLPR_ HAPT(0.001)YT(0.003)IPLS(0.991)PVLS(0.005)PTLPAEAPTAQVPPSLPR HAPT(-32.63)Y(-111.9)T(-24.82)IPLS(22.59)PVLS(-22.59)PT(-58.36)LPAEAPT(-138.56)AQVPPS(-155.62)LPR 0 0 1 0 Q9NPI6 Q9NPI6 Q9NPI6 DCP1A mRNA-decapping enzyme 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 907.9912109375 4 850.44945 3397.76869 33861.9131222592 1.4346 0.0012201 67366 57.291 67368 57.293 908.242723331151 99.255 0.51322 99.255 99.066 99.579 0 58 17 5 0.956738975599689 0.003689487193722 0.126940036826316 3.5983E-12 2 23088 191.82 180.69 8 29363000 8371.2 10171 7367 10936 8622.5 9393.9 12059 11810 9959.6 56192 7917.5 9612.1 7497.7 11158 8722.6 9621 12052 13446 9916.2 53185 2 2 2 2 2 2 2 2 2 2 1928 1998 1694 1786 2147;2148 2147 3624 HASAAGFPLSGAASWTLGR 19 Phospho (STY) _HAS(ph)AAGFPLSGAASWTLGR_ HAS(1)AAGFPLSGAASWTLGR HAS(121.91)AAGFPLS(-121.91)GAAS(-177.47)WT(-182.73)LGR 0 0 1 0 Q92619 Q92619 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.696228027344 3 646.30703 1935.89926 36430.8784116987 1.8897 0.0012213 118190 76.388 118190 76.389 722.694856259241 90.634 0.83429 90.634 90.192 91.026 1.4211E-14 81 28 4 0.997162608054525 0.00286723846506232 0.0928568806386885 3.8356E-11 1 21092 192.27 166.68 4 17379000 5140.4 3010.7 6195 3000.9 2697.3 6889.7 3669.7 4829.4 3080.6 16980 4868.1 2844.1 6136.4 3144.3 2956.9 6738.5 3672.6 5435.7 3064.6 16100 1 1 1 1 1 1 1 1 1 1 1929 1612 1695 1787 2149 2149 2970 HASAPSHVQPSDSEK 15 Phospho (STY) _HAS(ph)APSHVQPSDSEK_ HAS(1)APSHVQPSDSEK HAS(38.21)APS(-38.21)HVQPS(-141.87)DS(-166.32)EK 0 0 1 0 O60343 O60343 O60343 TBC1D4 TBC1 domain family member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.681701660156 3 552.905303 1655.69408 37593.9568101776 1.9375 0.0010713 276310 152.78 276320 152.78 705.680705957403 29.593 0.34851 29.593 29.429 29.778 0 43 11 5 0.973055187894278 0.00586179866313584 0.0531710627133634 6.3938E-16 1 6604 228.08 199.54 4 52694000 11392 6003.1 12361 5067.8 36251 14177 82693 35243 4279.9 2006.5 10783 5665.6 12771 5406.9 35960 14071 79797 34595 7548.7 2705 1 1 1 1 1 1 1 1 1 1 1930 145 1696 1788 2150 2150 248 HASAPSHVQPSDSEK 15 Phospho (STY) _HAS(ph)APSHVQPSDSEK_ HAS(0.944)APS(0.056)HVQPSDSEK HAS(12.26)APS(-12.26)HVQPS(-73.33)DS(-98.47)EK 0 0 1 0 O60343 O60343 O60343 TBC1D4 TBC1 domain family member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.512817382813 4 414.930796 1655.69408 42881.415925605 1.2394 0.00051428 276140 114.58 276150 114.58 529.512273158643 29.598 0.3202 29.598 29.458 29.778 0 31 10 5 0.487580445539473 0.00277209046419915 0.0230229809421416 0.0001144 2 6605 110.34 95.409 4 31873000 25548 26862 28859 21755 36036 35437 58005 43723 26372 5088.4 24187 25347 28998 22869 36426 35023 57123 43690 27363 5803.3 2 2 2 2 2 2 2 2 2 2 1931 145 1696 1788 2151;2152 2151 248 HASPILPITEFSDIPR 16 Phospho (STY) _HAS(ph)PILPITEFSDIPR_ HAS(1)PILPITEFSDIPR HAS(68.62)PILPIT(-68.62)EFS(-82.16)DIPR 0 0 1 0 P42167 P42167 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.702819824219 3 624.980031 1871.91826 37450.5099828914 1.7506 0.0010941 122220 76.388 122230 76.389 701.701942063383 96.134 1.564 96.134 95.651 97.215 -1.4211E-14 167 53 5 0.93883376633995 0.0126646003339322 0.358925697939702 9.133E-06 1 22314 136.26 117.02 3 133200000 6290.7 6701.8 6861.9 7194 2752.9 6661.8 3337.8 5143.3 6074.7 13525 5954.7 6333.7 6827.5 7347.9 3047.1 6707.7 3444.4 5625.5 5877.8 12855 1 1 1 1 1 1 1 1 1 1 1932 582 1697 1789 2153 2153 942 HAVSEGTK 8 Unmodified _HAVSEGTK_ 0 0 0 0 Q99880;Q99879;Q99877;Q93079;Q8N257;Q5QNW6;Q16778;P62807;P58876;P57053;P33778;P23527;P06899;O60814;Q96A08 Q99880 Q99880 HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST3H2BB;HIST2H2BF;HIST2H2BE;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BK;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 3-B;Histone H2B type 2-F;Histone H2B type 2-E;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-K;Histone H2B type 1-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 429.587127685547 3 276.811853 827.413731 47263.4438762989 0.0035015 9.6925E-07 551910 152.78 551910 152.78 429.587305204129 25.59 0.34625 25.59 25.385 25.731 0 34 11 4 0.67664185610804 0.0105786309901896 0.146123863245502 7.5252E-05 1 5707 136.8 115.12 1 25359000 41577 34957 40600 31764 32455 46946 44454 43435 34422 6149.5 39339 33004 40861 33053 33576 46346 44400 43890 34390 6795.8 1 1 1 1 1 1 1 1 1 1 1933 156 1698 1790 2154 2154 HAVSEGTK 8 Phospho (STY) _HAVS(ph)EGTK_ HAVS(1)EGTK HAVS(35.35)EGT(-35.35)K 0 0 1 0 Q99880;Q99879;Q99877;Q93079;Q8N257;Q5QNW6;Q16778;P62807;P58876;P57053;P33778;P23527;P06899;O60814;Q96A08 Q99880 Q99880 HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST3H2BB;HIST2H2BF;HIST2H2BE;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BK;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 3-B;Histone H2B type 2-F;Histone H2B type 2-E;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-K;Histone H2B type 1-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.861083984375 2 454.697307 907.380061 37548.6474355188 2.012 0.00091487 503990 229.16 503990 229.16 683.861085379468 29.12 0.35412 29.12 28.896 29.25 0 26 11 3 0.975995568638115 0.00141005997224674 0.0373212367500536 0.0010776 1 6473 113.44 73.898 2 12919000 16015 17171 16402 17468 20765 15553 20574 18263 17927 2750.8 15156 16222 16547 17887 20810 15714 20879 18297 17801 3012.9 1 1 1 1 1 1 1 1 1 1 1934 156 1698 1791 2155 2155 264 HAVSEGTK 8 Phospho (STY) _HAVS(ph)EGTK_ HAVS(0.998)EGT(0.002)K HAVS(26.79)EGT(-26.79)K 0 0 1 0 Q99880;Q99879;Q99877;Q93079;Q8N257;Q5QNW6;Q16778;P62807;P58876;P57053;P33778;P23527;P06899;O60814;Q96A08 Q99880 Q99880 HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST3H2BB;HIST2H2BF;HIST2H2BE;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BK;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 3-B;Histone H2B type 2-F;Histone H2B type 2-E;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-K;Histone H2B type 1-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 456.243743896484 3 303.467297 907.380061 46000.4023473593 0.47954 0.00014553 503430 152.78 503430 152.78 456.242947989794 29.095 0.38381 29.095 28.866 29.25 0 30 12 3 0.561439763592746 0.00130598775234778 0.0225141378618879 0.0094889 1 6501 75.387 56.607 2 14279000 10399 9260.1 10780 10274 10573 11783 11559 10645 10342 2309.5 9841.6 8753.4 10833 10511 10754 11734 11686 10792 10256 2421 1 1 1 1 1 1 1 1 1 1 1935 156 1698 1791 2156 2156 264 HAYKDDSPR 9 Phospho (STY) _HAYKDDS(ph)PR_ HAYKDDS(1)PR HAY(-62.77)KDDS(62.77)PR 0 0 1 1 Q02040 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.939514160156 3 390.164277 1167.471 42164.2847624322 1.0623 0.00041445 391570 152.78 391570 152.78 542.939918877155 26.398 1.0497 26.398 26.102 27.152 3.5527E-15 101 35 5 0.951420638729058 0.00689507563467738 0.078215028034793 0.00033533 1 5862 107.93 63.675 2 54267000 17963 13237 18655 12490 16582 17533 20217 16425 13435 2712.9 17000 12500 18726 12951 16995 17341 20219 16600 13544 2934.6 1 1 1 1 1 1 1 1 1 1 1936 847 1699 1792 2157 2157 1367 HCAPSPDRSPELSSSR 16 2 Phospho (STY) _HCAPS(ph)PDRS(ph)PELSSSR_ HCAPS(1)PDRS(0.995)PELS(0.004)S(0.001)SR HCAPS(46.75)PDRS(23.95)PELS(-23.95)S(-30.06)S(-36.01)R 0 0 2 1 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.644348144531 3 648.255328 1941.74416 36806.3802346863 2.0786 0.0013475 117840 76.388 117840 76.389 724.642865037639 30.105 2.0103 30.105 29.606 31.617 0 194 67 4 0.88992360076489 0.00145646523423116 0.039439052965742 0.00039281 2 6854 100.76 89.892 10 23878000 14573 12710 14948 12228 11271 13553 13439 12854 14265 6138.7 13791 12004 14990 12606 11686 13528 13598 13105 14040 6077.8 2 2 2 2 2 2 2 2 2 2 1937 1755 1700 1793 2158;2159 2159 3221;3222 HDGGSPSIK 9 Phospho (STY) _HDGGS(ph)PSIK_ HDGGS(0.994)PS(0.006)IK HDGGS(22.46)PS(-22.46)IK 0 0 1 0 Q15648 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 479.250305175781 3 326.474452 976.401525 45095.0487196684 0.92456 0.00030185 467960 152.78 467960 152.78 479.249996161522 33.798 0.49684 33.798 33.526 34.022 0 39 16 3 0.407614534208987 0.00170701225626559 0.0616454083574647 0.0080035 1 7551 75.849 43.52 2 11856000 16036 15450 18181 16435 13392 19509 11853 15301 19620 2639.7 15183 14601 18123 16864 13858 19370 12352 15590 19030 2839.7 1 1 1 1 1 1 1 1 1 1 1938 1084 1701 1794 2160 2160 1879 HDSPDLAPNVTYSLPR 16 Phospho (STY) _HDS(ph)PDLAPNVTYSLPR_ HDS(1)PDLAPNVTYSLPR HDS(72.1)PDLAPNVT(-72.1)Y(-72.44)S(-75.91)LPR 0 0 1 0 Q9BRD0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.010131835938 3 621.287524 1860.84074 37434.9478011125 1.7407 0.0010815 122950 76.387 122950 76.389 697.675442804468 68.597 1.2172 68.597 68.214 69.431 0 111 41 5 0.792006666093399 0.00326760063134494 0.033417719709894 0.0033488 1 16065 92.492 77.797 4 27329000 8866.2 9960.4 10006 11447 12495 9820.7 11984 10930 12118 7253.8 8394 9417.7 10039 11636 12526 9943.9 12227 11139 11951 7083.3 1 1 1 1 1 1 1 1 1 1 1939 1810 1702 1795 2161 2161 3320 HDSPEDVKR 9 Phospho (STY) _HDS(ph)PEDVKR_ HDS(1)PEDVKR HDS(148.78)PEDVKR 0 0 1 1 P31948 P31948 P31948 STIP1 Stress-induced-phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.943786621094 3 388.167799 1161.48157 42556.5507167864 1.7521 0.00068012 393580 152.78 393580 152.78 540.943178889106 27.985 1.6191 27.985 27.751 29.37 3.5527E-15 74 55 2 0.956857990051189 0.00944613981441638 0.137854063781753 4.5081E-06 1 6229 148.78 109.98 1 44331000 16136 33412 18496 30499 17243 15135 18586 23394 33161 4055 15278 31547 18476 31246 17605 15967 19253 23268 32102 4359.7 1 1 1 1 1 1 1 1 1 1 1940 526 1703 1796 2162 2162 854 HDSVDSGVSK 10 Phospho (STY) _HDS(ph)VDSGVSK_ HDS(1)VDSGVSK HDS(38.99)VDS(-38.99)GVS(-98.66)K 0 0 1 0 Q9HC44 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.595458984375 3 370.820287 1109.43903 46121.6103066438 0.38922 0.00014433 411990 152.78 411990 152.78 523.595201557997 34.11 0.25691 34.11 33.905 34.162 -7.1054E-15 14 8 2 0.89964433047742 0.000521616190679236 0.00614181588495757 0.00020155 1 7638 110.8 105.31 3 10187000 8787.6 10147 10160 10318 9103.2 11335 9148.1 10282 11108 3640.9 8320.4 9586.1 10139 10600 9302.8 11310 9363.5 10464 10878 3666.3 1 1 1 1 1 1 1 1 1 1 1941 1982 1704 1797 2163 2163 3600 HDTPDPSPLR 10 2 Phospho (STY) _HDT(ph)PDPS(ph)PLR_ HDT(1)PDPS(1)PLR HDT(130.56)PDPS(130.56)PLR 0 0 2 0 Q9BRD0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.330383300781 2 647.746875 1293.4792 36522.4310996398 1.4694 0.00095181 176890 114.58 176890 114.58 762.327541253162 37.493 0.94514 37.493 37.325 38.27 0 62 34 3 NaN 0 0 0.00016133 2 8451 130.56 98.344 1 41588000 29048 27407 27854 29018 27895 31124 25880 29400 30547 9319.9 27482 25900 28113 29730 28281 31099 26568 29838 29943 9456.2 2 2 2 2 2 2 2 2 2 2 1942 1810 1705 1798 2164;2165 2164 3322;4751 HELQANCYEEVKDR 14 Unmodified _HELQANCYEEVKDR_ 0 0 0 1 P23528 P23528 P23528 CFL1 Cofilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.291564941406 4 448.458613 1789.80535 42052.9573492951 1.7155 0.00076935 255500 114.58 255500 114.58 563.290995178675 45.023 0.72527 45.023 44.569 45.294 0 54 24 4 0.987996085358624 0.00217205328152254 0.030520639838757 9.0097E-08 1 10363 172.1 140.28 1 16850000 9655.8 7928.2 8142.6 7977 11153 8443.4 11607 9327.5 8073.7 1315.5 9131.2 7489.8 8323.8 8195 11143 8456 11696 9361.5 8116.2 1454.5 1 1 1 1 1 1 1 1 1 1 1943 467 1706 1799 2166 2166 HELSPPQKR 9 Phospho (STY) _HELS(ph)PPQKR_ HELS(1)PPQKR HELS(65.84)PPQKR 0 0 1 1 Q9BXP5 Q9BXP5 Q9BXP5 SRRT Serrate RNA effector molecule homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 543.967346191406 3 391.192167 1170.55467 43057.3316739645 0.75198 0.00029417 390540 152.77 390540 152.78 543.966423218748 37.249 2.0161 37.249 35.936 37.952 7.1054E-15 149 72 4 0.98257459708854 0.00178292522807651 0.0132694104953916 0.012719 2 8271 65.842 49.268 1 42855000 33891 29955 33821 30366 33619 35367 31895 31967 32508 5074.4 32070 28300 34054 31235 34105 35194 32566 32350 32050 5518 2 2 2 2 2 2 2 2 2 2 1944 1865 1707 1800 2167;2168 2167 3401 HEYPLSWMKEKIFSEVTPK 19 3 Phospho (STY) _HEY(ph)PLS(ph)WMKEKIFS(ph)EVTPK_ HEY(1)PLS(1)WMKEKIFS(1)EVTPK HEY(40.44)PLS(40.61)WMKEKIFS(40.61)EVT(-40.44)PK 0 0 3 2 Q8IXJ6 Q8IXJ6 Q8IXJ6 SIRT2 NAD-dependent protein deacetylase sirtuin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.693481445313 4 648.028897 2588.08648 31720.3669936372 1.7593 0.0011401 353630 229.16 353630 229.16 877.440218537278 101.99 0.14224 101.99 101.93 102.07 -1.4211E-14 12 4 4 0.92573819763408 0.00595364278034079 0.06505674711434 0.035937 1 24022 55.864 32.417 4 40252000 4409.8 6684 4476.1 6091.4 6594.8 4409.4 5939.6 6219.3 5781.6 66114 4173 6310.8 4528.1 6263.6 6557.9 4642.1 6073.1 8160.4 5711.4 62398 1 1 1 1 1 1 1 1 1 1 1945 1425 1708 1801 2169 2169 2596;2597;4884 HFLPLDFSTQVNSSLTSPTGR 21 Phospho (STY) _HFLPLDFSTQVNSSLTS(ph)PTGR_ HFLPLDFSTQVNSSLT(0.068)S(0.895)PT(0.036)GR HFLPLDFS(-135.76)T(-117.28)QVNS(-52.82)S(-47.71)LT(-11.17)S(11.17)PT(-13.9)GR 0 0 1 0 P19793 P19793 P19793 RXRA Retinoic acid receptor RXR-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 872.103088378906 3 795.380923 2383.12094 33717.6988882653 1.6689 0.0013274 96040 76.388 96041 76.389 872.103479334296 96.4 0.72145 96.4 96.087 96.808 0 68 24 4 0.914170209214105 0.00341323473752045 0.0295867063418412 2.0455E-11 1 22403 187.16 166.51 7 10628000 2968 3268.2 3719.6 3240.7 4163.6 3332.3 4220.5 4451.7 3235.6 15759 2811.3 3087.2 3707.7 3330.6 4198.9 3379.8 4266.4 4896.9 3234.3 14942 1 1 1 1 1 1 1 1 1 1 1946 442 1709 1802 2170 2170 719 HFSQSEETGNEVFGALNEEQPLPR 24 Phospho (STY) _HFS(ph)QSEETGNEVFGALNEEQPLPR_ HFS(0.982)QS(0.018)EETGNEVFGALNEEQPLPR HFS(17.3)QS(-17.3)EET(-61.35)GNEVFGALNEEQPLPR 0 0 1 0 Q6GYQ0 Q6GYQ0 Q6GYQ0 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1009.13854980469 3 932.415132 2794.22357 32192.5868804858 1.3736 0.0012808 81924 76.387 81926 76.389 1009.13806737099 83.5 0.63687 83.5 83.233 83.87 0 69 21 5 0.859764408693183 0.00405032714966023 0.114605698145238 7.3098E-18 1 19518 232.37 213.33 3 14337000 2498.6 3713.3 3319.6 3948.3 3060.8 2551.8 3550.7 5026 4086.4 29792 2367.4 3509.2 3293.2 4017.3 3128.8 2707.2 3605.5 5843.2 4009.3 28169 1 1 1 1 1 1 1 1 1 1 1947 1237 1710 1803 2171 2171 2180 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 Phospho (STY) _HGGSPQPLATTPLSQEPVNPPSEAS(ph)PTR_ HGGSPQPLATTPLSQEPVNPPS(0.054)EAS(0.676)PT(0.271)R HGGS(-164.65)PQPLAT(-140.93)T(-135.89)PLS(-123.75)QEPVNPPS(-11.02)EAS(3.98)PT(-3.98)R 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.85693359375 3 978.132736 2931.37638 31002.2250491735 1.7605 0.001722 78096 76.388 78097 76.39 1054.85473051178 61.344 0.70117 61.344 60.893 61.594 0 97 23 5 0.987289848170306 0.00251003863253766 0.0328641193479033 6.2268E-12 1 14349 194.8 175.9 7 27830000 3098.6 3266.3 2921.6 3018 2380.8 3936.3 3818.2 3910.3 2852.4 5870.4 2931.5 3084.1 2948.1 3128.7 2467.4 3915.3 3791.1 4100.2 2855.4 5618.2 1 1 1 1 1 1 1 1 1 1 1948 2226 1711 1804 2172 2172 4050;4051 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 2 Phospho (STY) _HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTR_ HGGS(0.999)PQPLAT(0.001)TPLSQEPVNPPS(0.006)EAS(0.786)PT(0.207)R HGGS(32.56)PQPLAT(-32.56)T(-44.79)PLS(-64.05)QEPVNPPS(-20.88)EAS(5.79)PT(-5.79)R 0 0 2 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.384826660156 4 753.842954 3011.34271 34494.5768159017 1.5845 0.0011945 75998 57.291 76000 57.292 811.384415036942 65.343 1.1631 65.343 64.794 65.957 0 182 39 6 0.974613636652081 0.00228601446812246 0.022785362973968 6.3543E-06 1 15271 137.12 126.7 21 85492000 6679.9 8502.3 7567.8 8073.3 5444.6 6570.9 6082.4 7642.8 10121 9566.8 6324.2 8029.4 7544.5 8291.4 5663.4 6684.8 6271.3 7913 9815 9185.1 1 1 1 1 1 1 1 1 1 1 1949 2226 1711 1805 2173 2173 4050;4051 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 2 Phospho (STY) _HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTR_ HGGS(0.998)PQPLAT(0.002)TPLSQEPVNPPS(0.001)EAS(0.898)PT(0.101)R HGGS(28.02)PQPLAT(-28.02)T(-45.97)PLS(-108.5)QEPVNPPS(-28.6)EAS(9.48)PT(-9.48)R 0 0 2 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1081.51135253906 3 1004.78818 3011.34271 30157.214177677 1.4222 0.001429 76024 76.388 76025 76.389 1081.51030230184 65.358 1.6057 65.358 64.711 66.316 0 251 54 7 0.985510477839012 0.00403862542400605 0.0514304042420267 9.3151E-18 1 15462 232.07 209.09 21 277220000 5212 6501.1 5536.8 6625.1 5283.7 5768.6 5255.5 7324.6 6666.2 16865 4933.1 6142 5553.4 6781.1 5377.8 5871.7 5389.6 7794.9 6517.7 16050 1 1 1 1 1 1 1 1 1 1 1950 2226 1711 1805 2174 2174 4050;4051 HGGVCAPAAVATSPPGAIPK 20 Phospho (STY) _HGGVCAPAAVATS(ph)PPGAIPK_ HGGVCAPAAVAT(0.161)S(0.839)PPGAIPK HGGVCAPAAVAT(-7.17)S(7.17)PPGAIPK 0 0 1 0 Q9Y6A5 Q9Y6A5 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.761474609375 3 646.648287 1936.92303 34600.5789481147 1.7461 0.0011291 236260 152.78 236260 152.78 799.759574336956 60.772 0.43917 60.772 60.656 61.095 7.1054E-15 41 14 3 0.99160440291084 0.00806224267242737 0.0712896206568272 6.337E-05 1 14255 104.63 86.267 2 61025000 13542 32477 15946 33172 12677 19416 10253 22381 34165 16331 12823 30684 15874 33797 13046 20143 11208 22827 32696 15895 1 1 1 1 1 1 1 1 1 1 1951 2310 1712 1806 2175 2175 4259 HGLQLGAQSPGR 12 Phospho (STY) _HGLQLGAQS(ph)PGR_ HGLQLGAQS(1)PGR HGLQLGAQS(190.1)PGR 0 0 1 0 Q8N1G0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 510.598083496094 3 434.210109 1299.6085 44333.4278861457 1.1013 0.00047821 175920 76.387 175920 76.388 510.597600165175 42.352 0.71239 42.352 42.054 42.766 0 42 24 2 0.900995649688362 0.0111245800773888 0.318448755572356 4.9724E-11 1 9679 190.1 164.77 1 76874000 18268 20221 18402 26544 16874 21324 22419 23014 24529 1515.2 17286 19138 18514 26785 17294 21631 22612 23065 24113 1959.4 1 1 1 1 1 1 1 1 1 1 1952 1455 1713 1807 2176 2176 2696 HGSASQVQK 9 Phospho (STY) _HGS(ph)ASQVQK_ HGS(0.999)AS(0.001)QVQK HGS(30.76)AS(-30.76)QVQK 0 0 1 0 P21359 P21359 P21359 NF1 Neurofibromin;Neurofibromin truncated MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 493.928588867188 3 341.153601 1020.43897 43732.1897806428 0.54751 0.00018678 447820 152.77 447820 152.77 493.92828422271 27.177 0.23127 27.177 27.09 27.321 -3.5527E-15 13 7 2 0.949039709430051 0.00341447046500949 0.0213942058064972 3.9278E-05 1 6061 135.56 80.95 2 20373000 10101 11798 9852.2 12165 11438 12162 12706 13030 13223 2930.9 9557.6 11147 9956.7 12468 11532 12207 12887 13125 13025 3061.4 1 1 1 1 1 1 1 1 1 1 1953 452 1714 1808 2177 2177 737 HGSGPNIILTGDSSPGFSK 19 Phospho (STY) _HGS(ph)GPNIILTGDSSPGFSK_ HGS(1)GPNIILTGDSSPGFSK HGS(52.92)GPNIILT(-52.92)GDS(-89.39)S(-97.24)PGFS(-113.9)K 0 0 1 0 Q53ET0 Q53ET0 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 804.079956054688 3 650.970083 1949.88842 34792.279258844 1.9043 0.0012396 234690 152.78 234690 152.78 804.07970364668 73.197 0.80742 73.197 72.838 73.645 0 100 27 5 0.981643070901872 0.00348993820285206 0.0549752047925861 4.7142E-06 1 17153 136.26 118.25 5 115960000 11648 14658 12794 12638 13207 12792 14220 14972 15486 11171 11026 13835 12824 13103 13393 12863 14461 15270 15226 10865 1 1 1 1 1 1 1 1 1 1 1954 1146 1715 1809 2178 2178 1992 HGSVSADEAAR 11 Phospho (STY) _HGS(ph)VSADEAAR_ HGS(0.871)VS(0.129)ADEAAR HGS(8.28)VS(-8.28)ADEAAR 0 0 1 0 Q9NWW5 Q9NWW5 Q9NWW5 CLN6 Ceroid-lipofuscinosis neuronal protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 704.82568359375 2 590.243141 1178.47173 37207.1023275803 1.8387 0.0010853 194130 114.58 194130 114.58 704.8248616565 24.439 0.40362 24.439 24.253 24.656 0 40 13 5 0.997397178951567 0.00513647247727811 0.10787441286225 1.7307E-21 1 5454 273.23 222.75 2 45262000 17560 3091.4 16224 3613.8 15559 18108 20556 14302 2586.1 3220 16611 2923.3 16415 3911.5 15882 17462 20192 14590 3313.9 3363 1 1 1 1 1 1 1 1 1 1 1955 2057 1716 1810 2179 2179 3723 HHNSTAELQK 10 Phospho (STY) _HHNS(ph)TAELQK_ HHNS(0.964)T(0.036)AELQK HHNS(14.33)T(-14.33)AELQK 0 0 1 0 P33527 P33527 P33527 ABCC1 Multidrug resistance-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 568.294982910156 3 415.518831 1243.53466 41257.3139687562 1.8169 0.00075498 367670 152.77 367670 152.78 568.293769015149 29.479 0.46902 29.479 29.28 29.749 0 47 15 4 0.974063206002084 0.0022313064906908 0.0321927563807934 4.585E-07 1 6565 168.93 79.379 2 20589000 6262.7 11656 6319.8 11621 16871 6051.3 17485 11282 11563 3917.4 5926.3 11011 6490.8 11845 16501 6387 17607 11232 11660 3949.8 1 1 1 1 1 1 1 1 1 1 1956 533 1717 1811 2180 2180 865 HIAECHPECSPNEDR 15 Phospho (STY) _HIAECHPECS(ph)PNEDR_ HIAECHPECS(1)PNEDR HIAECHPECS(183.39)PNEDR 0 0 1 0 Q96K83 Q96K83 Q96K83 ZNF521 Zinc finger protein 521 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.968322753906 3 644.245113 1929.71351 37263.7128409354 2.1797 0.0014043 118570 76.387 118570 76.389 720.632737607079 28.268 0.82906 28.268 28.008 28.837 3.5527E-15 82 28 4 0.976690693552671 0.00300460401146462 0.0424466669240597 1.5618E-10 1 6281 183.39 160.58 1 11967000 8113.4 3099.4 9318.6 3594.4 5987.5 8883.1 5295.6 5572.3 2817.1 2481.9 7681.9 2930.7 9271.9 3745.4 6260.7 8631.1 5355.8 5792.5 2884.8 2465.9 1 1 1 1 1 1 1 1 1 1 1957 1707 1718 1812 2181 2181 3146 HIKEEPLSEEEPCTSTAIASPEK 23 Phospho (STY) _HIKEEPLS(ph)EEEPCTSTAIASPEK_ HIKEEPLS(1)EEEPCTSTAIASPEK HIKEEPLS(34.43)EEEPCT(-34.43)S(-63.08)T(-77.82)AIAS(-149.71)PEK 0 0 1 1 Q9Y2X3 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.427368164063 4 666.3043 2661.18809 34273.1736246303 2.2335 0.0014882 257950 171.87 257950 171.87 838.427217644669 61.256 1.0564 61.256 60.893 61.949 0 169 35 7 0.980850609008101 0.00721066201430117 0.0804430033340196 1.2684E-13 1 14328 212.28 186.07 5 107260000 7883.8 12974 7488.3 10330 20361 7713 19791 14688 12891 13619 7458.6 12241 7719.5 10726 19888 7961 19984 14874 13012 13164 1 1 1 1 1 1 1 1 1 1 1958 2258 1719 1813 2182 2182 4183;4184 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Phospho (STY) _HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEKK_ HIKEEPLS(1)EEEPCTS(0.008)T(0.083)AIAS(0.909)PEKK HIKEEPLS(55.26)EEEPCT(-44.6)S(-20.69)T(-10.38)AIAS(10.38)PEKK 0 0 2 2 Q9Y2X3 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.5888671875 5 574.857154 2869.24939 36621.8883430421 1.7487 0.0010052 318910 183.33 318920 183.33 758.588366358837 60.426 0.57694 60.426 60.079 60.656 0 46 19 6 0.958871432479393 0.00185542562893066 0.029247093837286 1.2234E-07 2 14153 145.01 128.74 10 15210000 16372 18647 16329 18695 17012 16195 16571 18021 21208 18703 15492 17616 16453 19152 17221 16403 17016 18569 20729 18028 2 2 2 2 2 2 2 2 2 2 1959 2258 1720 1814 2183;2184 2183 4183;4184 HISFGGNLITFSPLQPGEF 19 Phospho (STY) _HIS(ph)FGGNLITFSPLQPGEF_ HIS(1)FGGNLITFSPLQPGEF HIS(34)FGGNLIT(-34)FS(-41.02)PLQPGEF 0 0 1 0 Q15398 Q15398 Q15398 DLGAP5 Disks large-associated protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.063598632813 3 714.341629 2140.00306 36082.5159326219 1.3679 0.00097712 106930 76.386 106930 76.387 791.063148057774 102.35 0.11887 102.35 102.28 102.39 0 7 3 3 0.881152290597626 0.000608227982572529 0.00461858482066534 0.044666 1 24124 44.258 27.764 3 9917700 2984.5 3317.6 3506.3 3260.6 3441.5 3745 3215 3531.6 3226.4 30202 2826 3133.7 3499.4 3359.1 3493.1 3786.4 3283.7 4460.8 3183 28520 1 1 1 1 1 1 1 1 1 1 1960 1074 1721 1815 2185 2185 1856 HKSDNETNLQQQVVWGNR 18 Phospho (STY) _HKS(ph)DNETNLQQQVVWGNR_ HKS(0.968)DNET(0.032)NLQQQVVWGNR HKS(14.79)DNET(-14.79)NLQQQVVWGNR 0 0 1 1 Q7Z401 Q7Z401 Q7Z401 DENND4A C-myc promoter-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 898.119384765625 3 745.009712 2232.00731 32800.0392702202 1.6361 0.0012189 205070 152.78 205070 152.78 898.119870782476 56.209 0.83282 56.209 55.95 56.783 -7.1054E-15 76 27 4 0.976408469853101 0.00229299371520533 0.0278684375533362 5.9559E-16 1 13108 222.46 191.92 2 21840000 14214 10164 15146 9932.2 9935.3 15141 10589 12258 11284 33652 13453 9599.8 15135 10296 10400 14971 10766 13421 11105 31971 1 1 1 1 1 1 1 1 1 1 1961 1333 1722 1816 2186 2186 2402 HLDRSPESDRPR 12 Phospho (STY) _HLDRS(ph)PESDRPR_ HLDRS(1)PESDRPR HLDRS(54.95)PES(-54.95)DRPR 0 0 1 2 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 444.219848632813 4 386.929593 1543.68927 46984.7333894939 0.79373 0.00030712 148060 57.29 148070 57.291 444.220097015118 24.671 1.3053 24.671 24.311 25.616 0 117 42 5 0.979731858527394 0.0125419271394729 0.0555804726183133 3.7553E-07 1 5490 141.36 117.53 2 120710000 10541 12708 9512 11390 10923 12058 12791 11524 11762 1866.4 9970.6 11998 9658 11786 11027 12053 12902 11636 11649 2024.1 1 1 1 1 1 1 1 1 1 1 1962 1755 1723 1817 2187 2187 3223 HLLGWSLPR 9 Phospho (STY) _HLLGWS(ph)LPR_ HLLGWS(1)LPR HLLGWS(41.28)LPR 0 0 1 0 REV__P35475 REV__P35475 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 463.251098632813 3 386.865503 1157.57468 44939.8838558023 -0.21717 -8.4015E-05 197450 76.386 197450 76.386 463.251224176391 54.35 0.89376 54.35 53.974 54.868 0 78 30 5 0.993884711806066 0.0108237332116436 0.100181835614717 0.040401 1 12665 41.283 12.478 1 136500000 66763 60305 55406 85125 74028 39284 29044 41151 72657 3737.5 63132 57109 56587 85152 73429 41453 32919 41318 69841 4471.7 1 1 1 1 1 1 1 1 1 1 + 1963 2330 1724 1818 2188 2188 4288 HLLSPQLVQYQCGDSGK 17 Phospho (STY) _HLLS(ph)PQLVQYQCGDSGK_ HLLS(1)PQLVQYQCGDSGK HLLS(53.16)PQLVQY(-53.16)QCGDS(-97)GK 0 0 1 0 Q9P209 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.755065917969 3 670.643202 2008.90778 34898.8229382577 2.0085 0.001347 227800 152.78 227810 152.78 823.753293667941 75.685 0.54387 75.685 75.431 75.975 1.4211E-14 71 18 6 0.695555565897807 0.00525486689475995 0.0632291993021187 1.1241E-05 1 17754 134.58 117.08 3 25468000 12906 11817 14758 12257 10981 13748 13596 12949 13276 103920 12219 11166 14713 12583 11403 13900 13705 16151 13113 98150 1 1 1 1 1 1 1 1 1 1 1964 2098 1725 1819 2189 2189 3793 HLPSPPLTQEVDLHSIAGPPVPPR 24 Phospho (STY) _HLPS(ph)PPLTQEVDLHSIAGPPVPPR_ HLPS(1)PPLTQEVDLHSIAGPPVPPR HLPS(60.13)PPLT(-60.13)QEVDLHS(-172.92)IAGPPVPPR 0 0 1 0 Q07889 Q07889 Q07889 SOS1 Son of sevenless homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.884704589844 4 659.341448 2633.33669 36514.0462791863 1.679 0.001107 86891 57.291 86893 57.292 716.883159112961 83.015 1.7578 83.015 82.314 84.072 -1.4211E-14 232 60 5 0.935581632082882 0.00431302519978903 0.0492115565206341 6.6516E-18 2 19349 232.18 213.41 3 32675000 6349.2 6388 6481.7 7198.4 11927 6538 12455 9410.7 6935.8 11925 6008.5 6039.1 6586.8 7331 11785 6641.4 12502 9687.6 7077.7 11447 2 2 2 2 2 2 2 2 2 2 1965 883 1726 1820 2190;2191 2190 1429 HLPSPPTLDSIITEYLR 17 Phospho (STY) _HLPS(ph)PPTLDSIITEYLR_ HLPS(1)PPTLDSIITEYLR HLPS(48.27)PPT(-48.27)LDS(-149.21)IIT(-198.18)EY(-232.81)LR 0 0 1 0 Q9Y4B6 Q9Y4B6 Q9Y4B6 VPRBP Protein VPRBP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.7314453125 3 678.009879 2031.00781 35679.8158735304 1.3787 0.00093477 112660 76.388 112670 76.388 754.731559068539 101.89 0.33657 101.89 101.73 102.07 0 41 11 6 0.978181457508782 0.0120725907360135 0.21752285775338 2.8334E-17 1 23976 249.49 204.16 5 117140000 6811.2 7203.9 7118.4 7555.2 8255.9 8460.6 10318 8192.7 8624.1 24649 6446.3 6807.3 7168 7750.5 8338.5 8483.2 10357 8971 8581.3 23400 1 1 1 1 1 1 1 1 1 1 1966 2277 1727 1821 2192 2192 4211 HLQLAIR 7 Unmodified _HLQLAIR_ 0 0 0 0 Q99878;Q96KK5;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;Q9BTM1;Q16777;Q96QV6;P16104;Q71UI9;P0C0S5 Q99878;P16104;Q71UI9 P16104 HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;H2AFJ;HIST2H2AC;HIST1H2AA;H2AFX;H2AFV;H2AFZ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-A;Histone H2AX;Histone H2A.V;Histone H2A.Z MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 360.567565917969 3 284.1801 849.518471 52536.4535202513 -0.89397 -0.00025405 268800 76.388 268800 76.387 360.567785576711 54.521 0.57482 54.521 54.207 54.782 0 36 19 2 0.932334617375396 0.000588968946587342 0.00336783856072359 2.4695E-08 1 12701 181.15 63.593 1 27778000 12263 11456 12731 10599 9603.5 10814 7591.5 11671 11251 1063.6 11605 10817 12751 10939 9905.4 10843 7924.3 11706 10946 1271.6 1 1 1 1 1 1 1 1 1 1 1967 402;296;347 1728 1822 2193 2193 HLSQEDNDLNK 11 Phospho (STY) _HLS(ph)QEDNDLNK_ HLS(1)QEDNDLNK HLS(153.14)QEDNDLNK 0 0 1 0 Q8N4S0 Q8N4S0 Q8N4S0 CCDC82 Coiled-coil domain-containing protein 82 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.640747070313 3 464.864556 1391.57184 40114.0414309007 1.216 0.00056526 328640 152.78 328650 152.78 617.640067792321 46.419 0.63056 46.419 46.14 46.771 0 60 21 4 0.762297529147887 0.00442200048029692 0.121017177099471 5.1707E-07 1 10699 153.14 124.51 1 29690000 21616 24759 20467 22142 23588 22747 26768 21720 24280 5671.1 20450 23374 20719 22904 23795 22771 27026 21997 24063 5842.7 1 1 1 1 1 1 1 1 1 1 1968 1468 1729 1823 2194 2194 2715 HNKSPTLSCR 10 Phospho (STY) _HNKS(ph)PTLSCR_ HNKS(0.778)PT(0.217)LS(0.005)CR HNKS(5.54)PT(-5.54)LS(-22.04)CR 0 0 1 1 Q5T5U3 Q5T5U3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.968322753906 3 427.19195 1278.55402 40377.1710031854 1.7893 0.00076436 357630 152.78 357630 152.78 579.967593606368 28.851 0.37984 28.851 28.666 29.046 0 20 12 2 0.977709405388951 0.00113410697665083 0.00954251173170828 0.0079342 1 6428 75.911 60.34 3 11528000 6315.7 13578 5199.6 13591 7886.1 5850.5 7405.9 10579 15821 3505.7 5972.1 12827 5331.9 13830 7845.4 6275.7 7792.1 10534 15254 3545.9 1 1 1 1 1 1 1 1 1 1 1969 1187 1730 1824 2195 2195 2079 HNSISEAK 8 Phospho (STY) _HNS(ph)ISEAK_ HNS(0.596)IS(0.404)EAK HNS(1.69)IS(-1.69)EAK 0 0 1 0 Q01970 Q01970 Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.371948242188 2 483.208039 964.401525 37766.5408302713 2.1525 0.0010401 474250 229.16 474260 229.16 712.37178783311 32.198 0.35839 32.198 31.998 32.356 0 25 11 3 0.999126908244593 0.000632705489334737 0.00998720845957018 0.044505 1 7221 53.252 33.989 2 10673000 13617 11727 13069 11918 16156 15264 18507 15536 11314 3096.7 12883 11079 13233 12279 16239 15160 18528 15666 11469 3275.4 1 1 1 1 1 1 1 1 1 1 1970 846 1731 1825 2196 2196 1366 HNSSDGFFNNGPLR 14 Phospho (STY) _HNS(ph)SDGFFNNGPLR_ HNS(0.998)S(0.002)DGFFNNGPLR HNS(26.37)S(-26.37)DGFFNNGPLR 0 0 1 0 Q9HC44 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.288879394531 3 547.898371 1640.67328 39630.5263229292 1.6301 0.00089311 139420 76.388 139420 76.389 624.286650753817 66.433 0.63619 66.433 66.14 66.776 0 58 21 4 0.97755822231387 0.00290791469648878 0.100576837854788 5.7825E-11 1 15595 202.81 190.14 2 14328000 4371.2 4522.2 4588 5100.3 4945.8 4489.8 6205.1 4993.9 5213.3 3772.1 4137 4275.2 4614.1 5191.7 5014.7 4541 6228.6 5103.4 5186.1 3667.4 1 1 1 1 1 1 1 1 1 1 1971 1982 1732 1826 2197 2197 3601 HPHDIIDDINSGAVECPAS 19 Unmodified _HPHDIIDDINSGAVECPAS_ 0 0 0 0 P30050 P30050 P30050 RPL12 60S ribosomal protein L12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.700988769531 3 682.977699 2045.91127 35760.7560958611 1.5772 0.0010772 111840 76.388 111850 76.389 759.699766759641 65.153 0.72078 65.153 64.794 65.515 0 106 24 6 0.952541286916293 0.00721929057560971 0.0530287328566087 4.9126E-11 1 15266 189.31 178.01 1 124970000 11427 9581.5 9102 9313.5 6358.4 9918.4 9083.3 10821 9797.7 13065 10804 9049.8 9270.4 9588.9 6653.7 9950.6 9134.8 11213 9637.1 12553 1 1 1 1 1 1 1 1 1 1 1972 508 1733 1827 2198 2198 HPPLYQAGLTPPLSPPK 17 Phospho (STY) _HPPLYQAGLTPPLS(ph)PPK_ HPPLYQAGLT(0.001)PPLS(0.999)PPK HPPLY(-69.33)QAGLT(-30.74)PPLS(30.74)PPK 0 0 1 0 Q9ULL5 Q9ULL5 Q9ULL5 PRR12 Proline-rich protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.43505859375 3 631.660522 1891.95974 35730.3793299293 1.8748 0.0011842 241860 152.78 241870 152.78 784.770673219073 77.895 1.093 77.895 77.196 78.289 1.4211E-14 99 37 3 0.978410481489826 0.00109825289010741 0.0408056265134234 9.204E-05 1 18174 103.95 78.627 3 19919000 5939.3 5902.9 6527.1 5609.6 6636.8 6149.4 6923.1 7359.6 5506.3 12604 5622.3 5574.6 6540.5 5786.3 6731.3 6178.7 6994.6 7715.2 5493.2 12039 1 1 1 1 1 1 1 1 1 1 1973 2186 1734 1828 2199 2199 3954 HQASDSENEELPKPR 15 2 Phospho (STY) _HQAS(ph)DS(ph)ENEELPKPR_ HQAS(1)DS(1)ENEELPKPR HQAS(81.02)DS(81.02)ENEELPKPR 0 0 2 1 Q96ST2 Q96ST2 Q96ST2 IWS1 Protein IWS1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.697021484375 3 632.922343 1895.7452 35641.872558462 1.885 0.0011931 241380 152.78 241380 152.78 785.697746582702 42.081 1.1705 42.081 41.77 42.94 0 60 40 2 0.353733673034096 0.000285011905565151 0.00773420396417477 0.0085199 1 9703 81.017 65.043 1 11799000 10910 11901 12330 11730 15512 12095 15253 15003 12137 24560 10329 11241 12372 12061 15547 12190 15453 15677 12107 23473 1 1 1 1 1 1 1 1 1 1 1974 1751 1735 1829 2200 2200 3209;3210 HQPWQSPERPLSR 13 Phospho (STY) _HQPWQS(ph)PERPLSR_ HQPWQS(1)PERPLSR HQPWQS(37.35)PERPLS(-37.35)R 0 0 1 1 Q9BQ52 Q9BQ52 Q9BQ52 ELAC2 Zinc phosphodiesterase ELAC protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.324096679688 3 566.601777 1696.7835 40678.6308995973 1.1714 0.0006637 134820 76.388 134820 76.389 642.988774476185 45.609 0.92773 45.609 45.122 46.05 0 77 31 4 0.291000366286941 0.000126294065449629 0.000629534554532249 0.028998 1 10446 52.862 35.982 2 43208000 24264 17325 26645 17733 26765 26295 29068 26317 20528 5159.8 22968 16369 26699 18320 27179 25984 29244 26552 20617 5467.7 1 1 1 1 1 1 1 1 1 1 1975 1801 1736 1830 2201 2201 3308 HQQQLLASPGSSTVDNK 17 Phospho (STY) _HQQQLLAS(ph)PGSSTVDNK_ HQQQLLAS(0.997)PGS(0.003)STVDNK HQQQLLAS(25.84)PGS(-25.84)S(-43.51)T(-55.5)VDNK 0 0 1 0 Q9C0E2 Q9C0E2 Q9C0E2 XPO4 Exportin-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.405822753906 3 630.62995 1888.86802 35612.9922477772 1.0951 0.00069062 242260 152.78 242260 152.78 783.740104765661 50.706 0.57197 50.706 50.449 51.021 0 66 19 4 0.987850559555596 0.00215695890313942 0.0274940226924091 2.0103E-08 1 11763 174.26 157.95 4 61732000 20211 12570 21634 13331 12535 21380 13103 17712 14783 28268 19130 11879 21592 13771 13267 21078 13356 18760 14515 27027 1 1 1 1 1 1 1 1 1 1 1976 1887 1737 1831 2202 2202 3440 HRGSADYSMEAK 12 Oxidation (M),Phospho (STY) _HRGS(ph)ADYSM(ox)EAK_ HRGSADYSM(1)EAK HRGS(0.996)ADY(0.003)S(0.001)MEAK HRGSADYSM(89.05)EAK HRGS(25.29)ADY(-25.29)S(-29.32)MEAK 0 1 1 1 Q04726 Q04726 Q04726 TLE3 Transducin-like enhancer protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.9697265625 3 483.193907 1446.55989 39668.9162844222 1.583 0.0007649 316180 152.77 316180 152.78 636.302824080313 27.297 0.4345 27.297 27.06 27.494 0 35 14 4 0.695602166876701 0.00113894152743907 0.0077410910697743 0.0073962 1 6077 89.049 54.871 3 9303900 8446 6830.9 6681.4 7558.4 10029 8331.5 13191 9701.8 5771.8 4587.6 7985.5 6457.1 6876.2 7728.7 10018 8342.3 13072 9816.8 6009.7 4544.3 1 1 1 1 1 1 1 1 1 1 1977 864 1738 1832 2203 2203 117 1403 HRGSADYSMEAK 12 Phospho (STY) _HRGS(ph)ADYSMEAK_ HRGS(1)ADYSMEAK HRGS(54.6)ADY(-69.05)S(-54.6)MEAK 0 0 1 1 Q04726 Q04726 Q04726 TLE3 Transducin-like enhancer protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.638305664063 3 477.862269 1430.56498 39138.0456699229 1.2574 0.00060086 319710 152.78 319710 152.78 630.638554407228 35.657 0.51978 35.657 35.36 35.88 0 50 17 4 0.875632149493391 0.00240016023028458 0.0291637507369952 2.8233E-07 1 8019 149.52 115.34 3 22561000 14660 12431 17258 12790 27120 15306 31468 20587 15925 10374 13882 11745 17358 13151 26986 15315 31397 20758 16372 10244 1 1 1 1 1 1 1 1 1 1 1978 864 1738 1833 2204 2204 1403 HRNSADYSSESK 12 Phospho (STY) _HRNS(ph)ADYSSESK_ HRNS(1)ADYSSESK HRNS(40.42)ADY(-40.42)S(-51.08)S(-50.57)ES(-58.86)K 0 0 1 1 Q04727 Q04727 Q04727 TLE4 Transducin-like enhancer protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.31103515625 3 487.531577 1459.5729 38862.0984431418 1.8264 0.0008904 313370 152.78 313370 152.78 640.309929651299 25.254 0.84511 25.254 24.685 25.53 0 43 28 3 0.95543841664313 0.000885125008917117 0.00824202302012892 0.011301 1 5642 66.965 53.001 5 3643800 4048.2 2431.7 4345.2 4363.5 2937.9 5750.6 3251.8 4274.9 4229 1658.4 3831.8 2308.2 4341.7 4384.7 3069.8 5686.8 3321.8 4395.2 4131.3 1660.5 1 1 1 1 1 1 1 1 1 1 1979 865 1739 1834 2205 2205 1407 HRPSPPATPPPK 12 2 Phospho (STY) _HRPS(ph)PPAT(ph)PPPK_ HRPS(1)PPAT(1)PPPK HRPS(113.86)PPAT(113.86)PPPK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.994506835938 3 481.217815 1440.63162 38867.479680824 1.2194 0.00058679 317480 152.78 317480 152.78 633.993377200087 34.626 4.6266 34.626 32.557 37.183 0 478 159 6 0.998260247810334 0.0399339915771455 0.299456837726257 0.00026928 2 7859 113.86 95.111 1 713580000 110730 136820 121530 118820 137390 129880 135520 128800 150810 7914.3 104820 129140 121940 123270 138480 129700 138460 129470 148160 10433 2 2 2 2 2 2 2 2 2 2 1980 1436 1740 1835 2206;2207 2207 2629;4660 HRPSPPATPPPK 12 2 Phospho (STY) _HRPS(ph)PPAT(ph)PPPK_ HRPS(1)PPAT(1)PPPK HRPS(61.1)PPAT(61.1)PPPK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 475.746459960938 4 361.16518 1440.63162 45166.7481662517 -0.02509 -9.0616E-06 317260 114.58 317260 114.58 475.746942748764 34.627 3.8959 34.627 32.617 36.513 0 462 134 6 0.837441661212693 0.00863632284092528 0.0383698922931038 0.017086 1 7665 61.102 43.614 1 499370000 49082 45859 45807 49340 60696 50283 58326 52635 54605 2535.2 46432 43341 46492 50463 60678 50393 59383 52782 54036 3605.4 1 1 1 1 1 1 1 1 1 1 1981 1436 1740 1835 2208 2208 2629;4660 HRSEPQHPK 9 Phospho (STY) _HRS(ph)EPQHPK_ HRS(1)EPQHPK HRS(68.03)EPQHPK 0 0 1 1 Q9HB19 Q9HB19 Q9HB19 PLEKHA2 Pleckstrin homology domain-containing family A member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 414.221038818359 4 299.639656 1194.52952 48668.5828336519 0.59213 0.00017743 382400 114.58 382400 114.58 414.220934239071 21.183 0.6876 21.183 20.997 21.685 -3.5527E-15 72 23 4 0.733241001479361 0.012012008951087 0.0325632597831558 0.012827 1 4799 68.034 47.081 1 8448100 8692.2 7907.6 8895.1 8033.3 16315 8922.8 15493 11898 7979.1 10026 8225.8 7470.7 9034.5 8255 16099 8960.2 15605 12122 8191.7 9715.9 1 1 1 1 1 1 1 1 1 1 1982 1976 1741 1836 2209 2209 3593 HRSESESK 8 Phospho (STY) _HRS(ph)ESESK_ HRS(0.999)ES(0.001)ESK HRS(29.74)ES(-29.74)ES(-68.19)K 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 499.921112060547 3 347.144994 1038.41315 43591.3878636421 1.3666 0.0004744 440090 152.78 440090 152.78 499.920620487781 20.769 0.62058 20.769 20.493 21.114 -3.5527E-15 64 17 5 0.981485804449637 0.0215831443905876 0.532689786802336 1.0825E-05 1 4709 155.86 55.17 3 8039200 4178.5 8741.2 5312.7 7037 3819.3 6241.6 6240.4 7440.3 7951.2 1858.8 3958.2 8247.8 5270.7 7316.6 3999.9 6310.3 6282.8 7472.8 7772.9 1922.5 1 1 1 1 1 1 1 1 1 1 1983 2226 1742 1837 2210 2210 4052 HRSNSFSDER 10 Phospho (STY) _HRS(ph)NSFSDER_ HRS(0.988)NS(0.01)FS(0.001)DER HRS(19.84)NS(-19.84)FS(-28.88)DER 0 0 1 1 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 515.234985351563 3 438.845607 1313.51499 44105.0309767461 1.2045 0.00052861 174070 76.388 174070 76.389 515.233918655487 23.193 0.25916 23.193 23.065 23.324 0 13 8 2 0.89863184807583 0.000475936312671689 0.0114925974461503 0.019065 1 5216 58.21 18.056 3 1585200 1504.4 1893.5 2286.7 1812.1 1049.5 2540.1 1557.4 2663.5 1993.7 3476.1 1426.5 1788.3 2243.4 1877.3 1145.7 2521.7 1572.9 2771.6 1948.7 3334.8 1 1 1 1 1 1 1 1 1 1 1984 896 1743 1838 2211 2211 1466;1467 HRSPTPK 7 Phospho (STY) _HRS(ph)PTPK_ HRS(1)PTPK HRS(35.84)PT(-35.84)PK 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 454.255401611328 3 301.479648 901.417116 46025.6273433619 1.2014 0.0003622 506750 152.78 506750 152.78 454.255089235052 22.195 0.3773 22.195 22.052 22.43 0 29 12 3 0.930168354453062 0.0141540437859313 0.103776748651114 0.005876 1 4999 88.392 48.39 2 9201300 8734.7 9382.7 8697.9 9666.7 10461 8012.5 12271 10965 10102 3543.7 8265.1 8865.1 8785.4 9881.6 10535 8148.9 12344 10991 10059 3590.6 1 1 1 1 1 1 1 1 1 1 1985 2226 1744 1839 2212 2212 4053;4824 HRSPTPK 7 2 Phospho (STY) _HRS(ph)PT(ph)PK_ HRS(1)PT(1)PK HRS(62.3)PT(62.3)PK 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.909759521484 3 328.135092 981.383446 45452.3481218427 1.3825 0.00045365 465590 152.78 465590 152.78 480.910111790046 22.873 1.8521 22.873 22.169 24.021 0 136 63 3 0.640270780706769 0.00276126395755101 0.0116208029905524 0.043877 1 5088 62.303 33.904 1 5194900 5401.6 5225.3 5070 5665.1 5130.3 5736.8 3900.6 4732.9 6982.1 2545 5110.1 4938.6 5122.7 5791.1 5188.2 5739.3 4113.9 4863 6758.5 2505.9 1 1 1 1 1 1 1 1 1 1 1986 2226 1744 1840 2213 2213 4053;4824 HSAGLTK 7 Phospho (STY) _HS(ph)AGLTK_ HS(0.986)AGLT(0.014)K HS(18.63)AGLT(-18.63)K 0 0 1 0 Q9H7F0 Q9H7F0 Q9H7F0 ATP13A3 Probable cation-transporting ATPase 13A3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 417.900207519531 3 265.124983 792.353118 47704.3359262217 0.56237 0.0001491 576240 152.78 576240 152.78 417.899990379565 31.029 0.51352 31.029 30.787 31.301 -3.5527E-15 63 16 5 0.520895193688102 0.0183452091547492 0.442649197429913 0.020532 1 6938 58.981 35.961 2 93379000 133120 182330 137840 199780 155270 138650 150030 172630 228610 10971 125980 172340 138730 203080 156540 142150 155120 172170 222240 14326 1 1 1 1 1 1 1 1 1 1 1987 1950 1745 1841 2214 2214 3543 HSAISPK 7 Phospho (STY) _HSAIS(ph)PK_ HSAIS(1)PK HS(-40.68)AIS(40.68)PK 0 0 1 0 Q8N5P1 Q8N5P1 Q8N5P1 ZC3H8 Zinc finger CCCH domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 639.354309082031 2 410.191661 818.368768 38915.4273172561 1.5272 0.00062646 558670 229.16 558670 229.16 639.35416698352 35.646 0.40419 35.646 35.445 35.85 0 32 13 3 0.98020456066308 0.00138042353374894 0.0323694452853512 0.016789 2 8007 76.619 48.606 2 22137000 34896 56512 33455 53828 44034 35805 43526 46146 60539 7334.8 33016 53370 33899 55143 44070 36837 44796 46108 59013 7974.5 2 2 2 2 2 2 2 2 2 2 1988 1475 1746 1842 2215;2216 2216 2723 HSLEEGLDMVNR 12 Phospho (STY) _HS(ph)LEEGLDMVNR_ HS(1)LEEGLDMVNR HS(132.08)LEEGLDMVNR 0 0 1 0 Q7Z309 Q7Z309 Q7Z309 FAM122B Protein FAM122B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.268676757813 3 493.881441 1478.62249 41235.9914192711 1.4902 0.00073598 154670 76.388 154670 76.389 570.268598104619 65.411 0.75983 65.411 65.166 65.926 0 55 25 3 0.660378157641725 0.00120660488453906 0.0474033098855076 2.7253E-05 1 15358 132.08 105.37 1 7851400 5573.5 5808.1 7399.9 5542.9 5690 6856.4 5466.6 6146.7 6572.7 2904.4 5280.8 5485.2 7324.9 5728.5 5873.1 6810.5 5605.6 6280.6 6438.3 2877.1 1 1 1 1 1 1 1 1 1 1 1989 1329 1747 1843 2217 2217 2385 HSLSGSSPGMK 11 Oxidation (M),Phospho (STY) _HSLSGSS(ph)PGM(ox)K_ HSLSGSSPGM(1)K HSLSGS(0.037)S(0.963)PGMK HSLSGSSPGM(78.96)K HS(-47.97)LS(-34.77)GS(-14.14)S(14.14)PGMK 0 1 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.94140625 3 395.165289 1182.47404 42522.0829489906 1.4148 0.00055908 386610 152.78 386610 152.78 547.940562990681 32.229 0.44398 32.229 31.969 32.413 0 34 14 3 0.800459042812847 0.00175187824268153 0.0268161514931325 0.0075442 1 7197 78.964 56.085 4 11666000 12882 9257.5 12604 8871.9 8566.4 13169 8852.3 12954 9138.5 2286 12189 8743 12658 9201.9 8935.9 13010 9005 13071 9004.8 2452.3 1 1 1 1 1 1 1 1 1 1 1990 2226 1748 1844 2218 2218 239 4054 HSLSGSSPGMK 11 Phospho (STY) _HSLSGSS(ph)PGMK_ HSLSGS(0.016)S(0.984)PGMK HS(-52.3)LS(-35.91)GS(-17.91)S(17.91)PGMK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.609619140625 3 389.833651 1166.47912 42118.6046401739 1.2765 0.00049762 391900 152.78 391900 152.78 542.609271873692 39.379 0.60667 39.379 39.052 39.658 0 65 20 5 0.939280211089828 0.00464688869946446 0.042815877034129 0.00016636 1 8933 103.43 88.043 4 35363000 13553 14297 12334 12524 9267.7 16787 11733 15499 12445 2708.8 12820 13495 12457 13036 9621.4 16625 11845 15678 12249 2909.4 1 1 1 1 1 1 1 1 1 1 1991 2226 1748 1845 2219 2219 4054 HSLSSTK 7 Phospho (STY) _HSLSS(ph)TK_ HSLS(0.331)S(0.596)T(0.073)K HS(-40.18)LS(-2.55)S(2.55)T(-9.14)K 0 0 1 0 P42858 P42858 P42858 HTT Huntingtin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 433.235382080078 3 280.460142 838.358598 47541.9416781973 0.055487 1.5562E-05 544730 152.78 544730 152.78 433.235289355427 33.238 0.25744 33.238 33.026 33.284 0 14 8 2 0.812658289786154 0.00113040079382593 0.0120853927309868 0.0059851 1 7428 88.267 69.955 4 11332000 23633 11211 25304 10250 13552 26207 17991 19447 12022 2680.6 22369 10585 25248 10840 14504 25476 17937 19850 12116 2974.2 1 1 1 1 1 1 1 1 1 1 1992 594 1749 1846 2220 2220 966 HSPAYAK 7 Phospho (STY) _HS(ph)PAYAK_ HS(1)PAYAK HS(42.51)PAY(-42.51)AK 0 0 1 0 Q9H2S9 Q9H2S9 Q9H2S9 IKZF4 Zinc finger protein Eos MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 437.899139404297 3 285.124983 852.353118 47829.0207626969 0.72071 0.00020549 535820 152.78 535820 152.78 437.899888009174 31.767 0.67386 31.767 31.413 32.087 -3.5527E-15 36 22 2 0.982992651400597 0.00104893507705635 0.0083015926205867 0.014217 1 7088 64.654 35.957 2 7687900 18666 31571 18012 29222 18313 17456 19672 22313 32039 1891.5 17660 29811 18180 29959 18597 18087 20298 22250 31088 2297.5 1 1 1 1 1 1 1 1 1 1 1993 1922 1750 1847 2221 2221 3489 HSPNPLLVAPTPPALQK 17 Phospho (STY) _HS(ph)PNPLLVAPTPPALQK_ HS(1)PNPLLVAPTPPALQK HS(83.12)PNPLLVAPT(-83.12)PPALQK 0 0 1 0 Q8TEK3 Q8TEK3 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.775024414063 3 620.664155 1858.97063 36388.319636296 1.9164 0.0011895 246150 152.78 246150 152.78 773.773675117511 81.371 0.60255 81.371 81.049 81.652 0 65 20 4 0.824166405752842 0.00255643130844226 0.0660935097513759 4.6197E-05 1 19043 121.33 100.67 2 13172000 10141 6064 8891.7 7601 4659 9235.5 4450.2 7167.1 6761.8 11689 9591.2 5737.2 8973.1 7736.9 4977.1 9180.4 4603.3 7621.5 6573.8 11172 1 1 1 1 1 1 1 1 1 1 1994 1552 1751 1848 2222 2222 2848 HSPTPQQSNR 10 Phospho (STY) _HS(ph)PTPQQSNR_ HS(0.795)PT(0.205)PQQSNR HS(5.89)PT(-5.89)PQQS(-38.97)NR 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 487.566925048828 3 411.178698 1230.51426 54813.2132851388 1.3312 0.00054734 185780 76.388 185780 76.388 487.566291006708 19.406 0.2406 19.406 19.265 19.505 0 11 9 2 0.923792458261567 0.000249224403574985 0.00731640187689228 0.041264 1 4443 41.48 35.398 3 307940 218.93 0 0 389.95 0 219.3 205.79 0 477.07 1085.4 206.35 0 0 373.85 0 226.73 207.02 0 459.22 1022 1 0 0 1 0 1 1 0 1 1 1995 1436 1752 1849 2223 2223 2630 HSSNPPLESHVGWVMDSR 18 Oxidation (M),Phospho (STY) _HSS(ph)NPPLESHVGWVM(ox)DSR_ HSSNPPLESHVGWVM(1)DSR HS(0.05)S(0.95)NPPLESHVGWVMDSR HSSNPPLESHVGWVM(193.5)DSR HS(-12.81)S(12.81)NPPLES(-50.03)HVGWVMDS(-163.65)R 0 1 1 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.360595703125 3 710.973611 2129.899 36871.5828590168 0.95034 0.00067567 107440 76.386 107440 76.387 788.028297601913 54.492 0.52046 54.492 54.178 54.698 0 48 17 3 0.972097041235778 0.000639528297815281 0.00428478247941401 4.9334E-11 2 12703 193.5 170.57 4 34778000 35487 25565 35330 30212 42470 34682 33860 32876 29067 34871 33579 24177 35656 30809 42551 34607 34749 34098 28884 33596 2 2 2 2 2 2 2 2 2 2 1996 1273 1753 1850 2224;2225 2224 161 2259 HSSNPPLESHVGWVMDSR 18 Phospho (STY) _HSS(ph)NPPLESHVGWVMDSR_ HS(0.184)S(0.816)NPPLESHVGWVMDSR HS(-6.47)S(6.47)NPPLES(-86.83)HVGWVMDS(-173.84)R 0 0 1 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.031188964844 3 705.641972 2113.90409 34120.6127707002 1.0112 0.00071353 108250 76.387 108250 76.387 782.360717759226 65.994 0.94537 65.994 65.515 66.46 0 120 31 6 0.692040247371493 0.0094639325616293 0.159113801415616 2.1485E-11 1 15475 204.33 164.31 4 77936000 18601 19559 23379 18427 22299 23460 23638 20813 17240 33634 17619 18470 23256 19070 22706 23321 23822 21993 17282 32152 1 1 1 1 1 1 1 1 1 1 1997 1273 1753 1851 2226 2226 2259 HSVTAATPPPSPTSGESGDLLSNLLQSPSSAK 32 2 Phospho (STY) _HSVTAAT(ph)PPPSPT(ph)SGESGDLLSNLLQSPSSAK_ HS(0.001)VT(0.004)AAT(0.982)PPPS(0.142)PT(0.468)S(0.392)GES(0.01)GDLLSNLLQSPSSAK HS(-31.95)VT(-24.06)AAT(19.13)PPPS(-5.42)PT(0.78)S(-0.78)GES(-16.7)GDLLS(-64.06)NLLQS(-110.26)PS(-126.22)S(-130.85)AK 0 0 2 0 Q96QU8 Q96QU8 Q96QU8 XPO6 Exportin-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.963012695313 4 824.129817 3292.49016 32349.468619047 1.526 0.0012576 139030 114.58 139030 114.58 938.96312352055 99.243 0.37127 99.243 99.066 99.438 1.4211E-14 34 12 5 0.94145197767289 0.00104415265969418 0.0120524902223076 7.8839E-08 1 23051 157.42 133.33 55 15135000 5195.3 6296 6107.3 5864.1 5937.1 5969.4 6643.5 6383.6 7589.7 33372 4919.5 5945.1 6096.5 6049.1 6045.9 6046.8 6754.5 7392.8 7448.7 31572 1 1 1 1 1 1 1 1 1 1 1998 1736 1754 1852 2227 2227 4738;4739 HTDDEMTGYVATR 13 Oxidation (M),Phospho (STY) _HTDDEM(ox)TGY(ph)VATR_ HTDDEM(1)TGYVATR HTDDEMTGY(1)VATR HTDDEM(187.11)TGYVATR HT(-132.83)DDEMT(-52.97)GY(50.74)VAT(-50.74)R 0 1 1 0 Q16539 Q16539 Q16539 MAPK14 Mitogen-activated protein kinase 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 607.5966796875 3 531.207994 1590.60215 39984.4019628897 1.3911 0.00073896 143800 76.388 143800 76.388 607.596012132134 26.13 0.69258 26.13 25.958 26.65 0 94 23 6 0.848317469508827 0.00454992667556192 0.0443670019370581 1.374E-10 1 5820 187.11 135.98 4 17907000 6877.7 5538.5 5191.9 5798.6 8323.1 6673.5 8343.5 6191.5 5114 3150.1 6501.8 5233.5 5363.3 5952 8258.7 6650.1 8403.5 6324.1 5182.9 3109.5 1 1 1 1 1 1 1 1 1 1 1999 1105 1755 1853 2228 2228 148 4881 HTDDEMTGYVATR 13 Phospho (STY) _HTDDEMTGY(ph)VATR_ HTDDEMTGY(1)VATR HT(-149.22)DDEMT(-64.55)GY(52.69)VAT(-52.69)R 0 0 1 0 Q16539 Q16539 Q16539 MAPK14 Mitogen-activated protein kinase 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 602.264038085938 3 525.876356 1574.60724 39375.0945665315 0.6278 0.00033015 145260 76.388 145260 76.388 602.264351838621 36.969 0.57956 36.969 36.691 37.27 -7.1054E-15 79 19 5 0.865650955680118 0.00285155351104743 0.0154239584826666 7.0112E-11 1 8311 196.11 183.34 4 94733000 9815.7 11398 11692 10061 15240 11156 14772 11808 10930 2547.9 9295.2 10760 11708 10430 15245 11146 14954 11895 10948 2672.5 1 1 1 1 1 1 1 1 1 1 2000 1105 1755 1854 2229 2229 4881 HTFSGVASVESSSGEAFHVGK 21 Phospho (STY) _HTFSGVAS(ph)VESSSGEAFHVGK_ HTFSGVAS(1)VESSSGEAFHVGK HT(-83.59)FS(-51.81)GVAS(34.85)VES(-34.85)S(-60.16)S(-75.48)GEAFHVGK 0 0 1 0 CON__P12763 CON__P12763 CON__P12763 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.101623535156 3 733.995069 2198.96338 32780.7430064995 1.8627 0.0013672 208140 152.77 208140 152.78 887.104731387688 69.032 0.70177 69.032 68.672 69.374 0 66 23 4 0.974211209007924 0.00122770569392696 0.0111552192047644 2.6924E-17 2 16196 246.77 223.21 6 12932000 9979.3 9285 11460 9854 9264.2 13029 12991 12776 11828 110670 9448.5 8774.4 11434 10134 9582.5 13124 13013 16160 11720 104500 2 2 2 2 2 2 2 2 2 2 + 2001 26 1756 1855 2230;2231 2230 46 HTGCCGDNDPIDVCEIGSK 19 Unmodified _HTGCCGDNDPIDVCEIGSK_ 0 0 0 0 Q15181 Q15181 Q15181 PPA1 Inorganic pyrophosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.06787109375 3 711.959322 2132.85614 33667.632382115 1.5685 0.0011167 214580 152.77 214580 152.78 865.068547694338 59.841 0.51531 59.841 59.621 60.136 0 67 17 5 0.98529165579309 0.00272647012290565 0.0115744847367928 2.7197E-08 1 14013 171.68 150.32 1 40970000 14151 21732 14649 26144 16263 17196 16140 19311 23332 34556 13392 20554 14741 26431 16413 17727 16632 20329 22716 32986 1 1 1 1 1 1 1 1 1 1 2002 1063 1757 1856 2232 2232 HTGPNSPDTANDGFVR 16 Phospho (STY) _HTGPNS(ph)PDTANDGFVR_ HTGPNS(1)PDTANDGFVR HT(-82.15)GPNS(42.39)PDT(-42.39)ANDGFVR 0 0 1 0 P31943;P55795 P31943 P31943 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.304443359375 3 588.91609 1763.72644 37280.527204506 2.1583 0.001271 129710 76.387 129710 76.389 665.302599222427 38.434 0.42652 38.434 38.183 38.61 0 47 14 4 0.950792167761791 0.00257140709118723 0.0324615918370504 5.5274E-11 1 8691 200.2 177.89 3 36402000 12118 14028 11619 13833 15414 12585 14285 14281 14573 4273.2 11465 13250 11772 14195 15403 12700 14603 14388 14367 4354.2 1 1 1 1 1 1 1 1 1 1 2003 524 1758 1857 2233 2233 853 HTGPNSPDTANDGFVR 16 Phospho (STY) _HTGPNS(ph)PDTANDGFVR_ HTGPNS(1)PDTANDGFVR HT(-82.9)GPNS(41.81)PDT(-41.81)ANDGFVR 0 0 1 0 P31943;P55795 P31943 P31943 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.302185058594 3 588.91609 1763.72644 38167.9991419522 1.4821 0.00087285 129710 76.387 129710 76.388 665.303666672483 40.222 1.0238 40.222 39.833 40.857 0 131 34 6 0.990890254320671 0.00290438205400484 0.0170172792835354 8.4344E-16 1 9095 218.11 195.23 3 698060000 17260 19241 16651 18642 17786 15665 20897 17510 17941 6412.5 16330 18173 16821 19129 18023 15870 21041 17685 17828 6443.4 1 1 1 1 1 1 1 1 1 1 2004 524 1758 1857 2234 2234 853 HTSQKDYSR 9 Phospho (STY) _HT(ph)SQKDYSR_ HT(0.584)S(0.416)QKDYSR HT(1.47)S(-1.47)QKDY(-70.21)S(-65.22)R 0 0 1 1 P14317 P14317 P14317 HCLS1 Hematopoietic lineage cell-specific protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 553.946899414063 3 401.171432 1200.49247 41735.9745047663 1.6643 0.00066766 380820 152.78 380820 152.78 553.9462810889 24.514 0.3736 24.514 24.368 24.742 3.5527E-15 36 12 4 0.914983708975406 0.00496457051203469 0.0236093888487044 0.010353 1 5479 89.189 70.443 4 15293000 12205 1893.6 10959 2334.4 8840 12845 9680.5 8857.7 2346.3 2687.9 11544 1791.3 11083 2538.9 9101 12361 9612.7 9120.4 2626.2 2736 1 1 1 1 1 1 1 1 1 1 2005 387 1759 1858 2235 2235 4396 HVDSLSQRSPK 11 Phospho (STY) _HVDSLSQRS(ph)PK_ HVDSLSQRS(1)PK HVDS(-60.6)LS(-40.77)QRS(40.77)PK 0 0 1 1 Q9UHD8 Q9UHD8 Q9UHD8 SEPT9 Septin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.324768066406 3 445.213519 1332.61873 40126.679754132 1.257 0.00055964 343150 152.78 343150 152.78 597.988725837613 33.391 0.67678 33.391 33.026 33.703 0 40 23 2 0.82095470528522 0.00128626982599826 0.00405805062395975 5.1787E-05 1 7462 127.71 101.67 3 42957000 8719.8 12294 9244.7 9428.7 8557.3 12409 23315 21466 11011 4444.7 8253.1 11597 9298.1 9903.8 8921.6 12427 22687 21315 11387 4682 1 1 1 1 1 1 1 1 1 1 2006 2146 1760 1859 2236 2236 3867 HVTLPSSPR 9 Phospho (STY) _HVTLPSS(ph)PR_ HVTLPS(0.412)S(0.588)PR HVT(-43.51)LPS(-1.55)S(1.55)PR 0 0 1 0 Q5T4S7 Q5T4S7 Q5T4S7 UBR4 E3 ubiquitin-protein ligase UBR4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 434.897369384766 3 358.509496 1072.50666 47536.5980947783 0.2925 0.00010487 213070 76.388 213070 76.388 434.897021683908 42.989 0.72838 42.989 42.654 43.382 0 65 24 4 0.987493777563642 0.00401529210485774 0.0397859165894917 0.00089254 1 9823 99.732 59.814 3 66119000 9241.7 17482 8874.1 14402 10690 9889.7 16727 19148 17162 1084.4 8743.6 16497 8990.4 14903 10827 10232 16749 18881 16915 1464.3 1 1 1 1 1 1 1 1 1 1 2007 1184 1761 1860 2237 2237 2073 HYGGLTGLNK 10 Phospho (STY) _HY(ph)GGLTGLNK_ HY(1)GGLTGLNK HY(37.11)GGLT(-37.11)GLNK 0 0 1 0 P18669;P15259;Q8N0Y7 P18669 P18669 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.288635253906 3 380.513018 1138.51722 43884.4003382507 1.5389 0.00058557 401500 152.78 401500 152.78 533.288425077007 53.926 0.64354 53.926 53.564 54.207 7.1054E-15 47 21 4 0.580056297150472 0.00132177162713652 0.0250226267358205 0.00026588 1 12592 103.55 48.939 2 9007500 9172.3 10850 8595.9 11850 6517.3 9528.2 6630.4 8774.7 11547 1957.6 8677.2 10255 8663.4 12069 6742.8 9648.5 6878.4 8889.8 11185 2046.4 1 1 1 1 1 1 1 1 1 1 2008 431 1762 1861 2238 2238 4872 HYGITSPISLAAPK 14 Phospho (STY) _HYGITS(ph)PISLAAPK_ HYGIT(0.121)S(0.879)PISLAAPK HY(-66.14)GIT(-8.6)S(8.6)PIS(-40.55)LAAPK 0 0 1 0 P51003 P51003 P51003 PAPOLA Poly(A) polymerase alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.371032714844 3 512.260358 1533.75924 38375.8604690247 2.0223 0.001036 298240 152.77 298240 152.78 665.034422122405 76.69 0.75465 76.69 76.215 76.969 0 79 25 5 0.950830089188653 0.0156568668568372 0.255643646801036 8.3806E-05 1 17990 122.12 99.198 4 64234000 22928 26517 25615 25214 17355 30049 18278 23792 31140 6674.1 21705 25042 25539 26046 18125 29838 18913 24308 30180 6835.1 1 1 1 1 1 1 1 1 1 1 2009 674 1763 1862 2239 2239 1128 HYQGEEKSD 9 Phospho (STY) _HYQGEEKS(ph)D_ HYQGEEKS(1)D HY(-172.69)QGEEKS(172.69)D 0 0 1 1 P13984 P13984 P13984 GTF2F2 General transcription factor IIF subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 544.256408691406 3 391.480042 1171.4183 41893.5972339344 1.6966 0.00066418 390250 152.78 390250 152.78 544.255138926908 28.59 1.5976 28.59 28.209 29.806 0 150 54 4 0.964592040728594 0.00620969401391032 0.102027049827489 6.068E-14 2 6325 215.02 205.36 2 83293000 19942 17582 19528 16983 14957 20854 13544 17793 16758 7784 18869 16605 19629 17536 15431 20706 13943 18201 16399 7741.4 2 2 2 2 2 2 2 2 2 2 2010 384 1764 1863 2240;2241 2240 619 IAASSSFR 8 Phospho (STY) _IAASSS(ph)FR_ IAAS(0.021)S(0.105)S(0.874)FR IAAS(-16.24)S(-9.21)S(9.21)FR 0 0 1 0 Q99961 Q99961 Q99961 SH3GL1 Endophilin-A2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.289916992188 2 459.707675 917.400797 41021.6903641434 1.0641 0.00048917 249250 114.58 249250 114.58 574.289205832329 50.757 1.1241 50.757 50.364 51.488 0 106 38 5 0.81728721803399 0.00253310090809575 0.0585557570491202 0.015429 1 11751 76.17 12.636 3 302780000 27700 27684 28854 25409 13008 26104 15789 23131 28749 3237.8 26216 26139 28800 26239 14187 26103 16293 23415 27817 3584.1 1 1 1 1 1 1 1 1 1 1 2011 1797 1765 1864 2242 2242 3305 IACKSPPPESMDTPTSTR 18 Phospho (STY) _IACKS(ph)PPPESMDTPTSTR_ IACKS(1)PPPESMDTPTSTR IACKS(48.08)PPPES(-48.08)MDT(-75.01)PT(-85.04)S(-88.35)T(-87.2)R 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.412780761719 3 685.635607 2053.88499 34229.9934967642 1.7571 0.0012047 222820 152.77 222820 152.78 838.744311939456 52.52 0.71544 52.52 52.183 52.899 0 89 24 5 0.956056573316928 0.00108930922910533 0.0203269847200218 2.017E-07 1 12197 146.15 133.35 6 28517000 12643 18679 14331 19884 11408 13943 11421 15582 20582 9313.1 11970 17652 14298 20247 11758 14279 11876 15847 19920 9130.1 1 1 1 1 1 1 1 1 1 1 2012 603 1766 1865 2243 2243 981 IACKSPPPESVDTPTSTK 18 Phospho (STY) _IACKS(ph)PPPESVDTPTSTK_ IACKS(0.999)PPPES(0.001)VDTPTSTK IACKS(30.99)PPPES(-30.99)VDT(-78.29)PT(-86.66)S(-93.15)T(-99.56)K 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.140075683594 3 665.642868 1993.90677 33475.7767814774 1.3671 0.00091002 344270 229.16 344270 229.16 895.139997749188 55.742 0.73275 55.742 55.393 56.126 0 87 24 5 0.980817555869896 0.00385578581123426 0.0311355632702466 2.342E-11 1 12978 203.4 171.93 6 47292000 26084 31559 30945 33423 16141 27653 17143 28276 35692 10101 24700 29823 30701 34111 17286 28003 17910 28643 34431 10166 1 1 1 1 1 1 1 1 1 1 2013 603 1767 1866 2244 2244 982 IACKSPQPDPVDTPASTK 18 Phospho (STY) _IACKS(ph)PQPDPVDTPASTK_ IACKS(1)PQPDPVDTPASTK IACKS(68.54)PQPDPVDT(-68.54)PAS(-90.46)T(-96.73)K 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.141723632813 3 664.642979 1990.90711 30873.5081103934 1.9341 0.0012855 344790 229.16 344790 229.16 894.140141034889 57.411 0.68776 57.411 57.072 57.76 0 45 23 3 0.766527305608238 0.00167870051371576 0.0416418671547363 1.0996E-05 1 13440 132.84 106.21 4 11802000 13303 13792 16712 14918 9669.9 15312 9591.1 13770 16976 12412 12600 13035 16546 15255 10235 15334 9968.9 14246 16437 12006 1 1 1 1 1 1 1 1 1 1 2014 603 1768 1867 2245 2245 983 IACRSPQPDPVGTPTIFKPQSK 22 Phospho (STY) _IACRS(ph)PQPDPVGTPTIFKPQSK_ IACRS(1)PQPDPVGTPTIFKPQSK IACRS(78.21)PQPDPVGT(-78.21)PT(-90.24)IFKPQS(-118)K 0 0 1 2 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.938659667969 4 626.814638 2503.22944 35495.6179059148 2.1567 0.0013519 274200 171.87 274200 171.87 798.937879248584 72.257 0.64989 72.257 71.954 72.604 0 56 21 3 0.742022541821787 0.00183315872645605 0.00914980672529722 5.5152E-08 1 16969 150.14 129.48 4 24347000 10851 23007 12637 22706 11116 12744 11907 16899 26500 19978 10274 21732 12605 23172 11396 13308 12482 17392 25529 19203 1 1 1 1 1 1 1 1 1 1 2015 603 1769 1868 2246 2246 984 IAEPSVCGR 9 Phospho (STY) _IAEPS(ph)VCGR_ IAEPS(1)VCGR IAEPS(96.96)VCGR 0 0 1 0 P33991 P33991 P33991 MCM4 DNA replication licensing factor MCM4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.311340332031 2 534.730824 1067.4471 39150.1661800742 0.71997 0.00038499 214280 114.58 214280 114.58 649.311701525446 47.211 0.43953 47.211 46.888 47.328 0 22 15 2 0.847055311710003 0.00107381155242665 0.00602755113219463 0.0028728 1 10915 96.957 83.187 1 30173000 32417 37273 36228 37042 42600 37479 38553 38856 43980 16405 30689 35209 36331 38055 42802 37595 39587 39417 43164 16347 1 1 1 1 1 1 1 1 1 1 2016 535 1770 1869 2247 2247 869 IAFDAESEPNNSSGSMEK 18 Phospho (STY) _IAFDAESEPNNSSGS(ph)MEK_ IAFDAESEPNNS(0.001)S(0.063)GS(0.936)MEK IAFDAES(-106.26)EPNNS(-32.46)S(-11.72)GS(11.72)MEK 0 0 1 0 Q92556 Q92556 Q92556 ELMO1 Engulfment and cell motility protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.046203613281 3 664.934599 1991.78197 34759.5499200795 2.0858 0.0013869 229760 152.78 229760 152.78 818.044208290655 71.644 0.58223 71.644 71.342 71.924 0 71 19 5 0.957158645090974 0.0037787227288358 0.0891247131347913 1.7202E-07 1 16782 150.83 133.61 4 26026000 8009.1 3207.1 9711.3 4417.1 15006 9320.3 17464 10909 5078 16942 7585.1 3036.5 9750.4 4540.3 14938 9175.2 17320 11392 5535.8 16206 1 1 1 1 1 1 1 1 1 1 2017 1599 1771 1870 2248 2248 2934;2935 IAFDAESEPNNSSGSMEKR 19 Phospho (STY) _IAFDAESEPNNSS(ph)GSMEKR_ IAFDAESEPNNS(0.017)S(0.722)GS(0.261)MEKR IAFDAES(-81.18)EPNNS(-16.19)S(4.42)GS(-4.42)MEKR 0 0 1 1 Q92556 Q92556 Q92556 ELMO1 Engulfment and cell motility protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 870.079711914063 3 716.968302 2147.88308 32794.4649208306 1.4336 0.0010279 213080 152.78 213090 152.78 870.078620276618 62.251 0.5123 62.251 61.92 62.433 0 40 17 3 0.827231750483116 0.00205014241613125 0.0410010523859281 2.3267E-08 1 14611 172.42 149.78 4 18273000 14378 7495.6 14543 6956.1 21868 13351 23084 17414 7752.7 16690 13606 7077.8 14727 7278 21762 13179 23019 17813 8299.8 16119 1 1 1 1 1 1 1 1 1 1 2018 1599 1772 1871 2249 2249 2934;2935 IAISPLKSPNK 11 Phospho (STY) _IAIS(ph)PLKSPNK_ IAIS(0.993)PLKS(0.007)PNK IAIS(21.58)PLKS(-21.58)PNK 0 0 1 1 Q6MZP7 Q6MZP7 Q6MZP7 LIN54 Protein lin-54 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.7275390625 3 416.563489 1246.66864 39506.3619542728 2.4114 0.0010045 550130 229.16 550130 229.16 645.726160959251 72.375 0.76181 72.375 72.105 72.867 0 75 25 4 0.876771219973215 0.0019324997698202 0.0173907260723013 0.0069298 1 16986 79.652 58.094 2 17188000 13365 21060 12963 20373 16083 14865 16860 17552 22215 5169 12646 19891 13115 20871 16153 15189 17271 17658 21693 5273.5 1 1 1 1 1 1 1 1 1 1 2019 1246 1773 1872 2250 2250 2207 IALSPITK 8 Phospho (STY) _IALS(ph)PITK_ IALS(0.939)PIT(0.061)K IALS(11.85)PIT(-11.85)K 0 0 1 0 Q8WUM0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.915832519531 2 461.754094 921.493635 38572.8470993066 2.1774 0.0010054 496290 229.16 496290 229.16 690.91677169048 80.346 0.38889 80.346 80.162 80.551 0 20 12 2 0.900738890701107 0.000229914231638047 0.00431389568844925 0.017363 1 18825 72.652 43.491 2 5861700 8477 9484.3 9074.1 9597.9 9858.5 8981.5 8149 9396.7 9691.1 12520 8023.7 8960.2 9109.1 9838 9935.4 9058.9 8419.3 9786.7 9496.8 12007 1 1 1 1 1 1 1 1 1 1 2020 1565 1774 1873 2251 2251 2877 IAQLEEELEEEQGNTELINDR 21 Unmodified _IAQLEEELEEEQGNTELINDR_ 0 0 0 0 P35579 P35579 P35579 MYH9 Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.451843261719 3 824.729395 2471.16636 32678.9135699961 1.4296 0.0011791 92621 76.387 92623 76.389 901.451028847686 99.165 0.42808 99.165 99.066 99.494 0 43 14 6 0.993702626695771 0.0446918775958654 0.881438637042954 1.0416E-31 1 23021 301.57 283.12 1 216120000 20747 12755 18508 5811.5 17836 17907 19568 16387 7244.7 39106 19623 12009 18760 6585.2 18153 17464 19498 17675 7671 37202 1 1 1 1 1 1 1 1 1 1 2021 547 1775 1874 2252 2252 IAQLEEQLDNETK 13 Unmodified _IAQLEEQLDNETK_ 0 0 0 0 P35579 P35579 P35579 MYH9 Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.037109375 3 510.926382 1529.75732 39120.1953574312 1.6096 0.00082238 299020 152.78 299020 152.78 663.701618971885 86.417 0.54516 86.417 86.131 86.676 -1.4211E-14 58 18 4 0.877371150570704 0.00326836722484852 0.0516047964583126 8.0465E-11 1 20144 194.86 167.89 1 17132000 8560.4 6350.4 9402.5 5059.1 8316.7 9943.2 8911.2 8041.3 5882.2 7253.7 8103.5 5991.6 9407.2 5351.8 8509.5 9738.4 8959.3 8358.3 5932.4 7016.4 1 1 1 1 1 1 1 1 1 1 2022 547 1776 1875 2253 2253 IAQVSPGPR 9 Phospho (STY) _IAQVS(ph)PGPR_ IAQVS(1)PGPR IAQVS(70.32)PGPR 0 0 1 0 Q9NQS7 Q9NQS7 Q9NQS7 INCENP Inner centromere protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.331787109375 2 502.749874 1003.4852 40241.2957112364 0.93746 0.00047131 227910 114.58 227910 114.58 617.330146466924 45.361 0.57952 45.361 45.063 45.643 0 47 19 3 0.360823078656189 0.00360687086472209 0.0762222512184784 0.016128 1 10406 70.321 55.483 1 148250000 83342 69072 82866 69007 54625 77701 57464 74005 72004 7479.9 78861 65250 83128 70998 57155 77463 58755 74601 70430 8755.9 1 1 1 1 1 1 1 1 1 1 2023 2008 1777 1876 2254 2254 3644 IARIFSSQYSQK 12 2 Phospho (STY) _IARIFS(ph)SQY(ph)SQK_ IARIFS(0.651)S(0.651)QY(0.687)S(0.011)QK IARIFS(0)S(0)QY(0.49)S(-19.67)QK 0 0 2 1 Q4AC94 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.6826171875 3 529.903784 1586.68952 38063.4879913853 2.0142 0.0010673 288310 152.78 288320 152.78 682.681639925481 74.9 0.49528 74.9 74.653 75.149 0 53 16 4 0.892969443654761 0.00224580983093233 0.0290276347578363 0.050921 1 17575 41.54 16.749 6 18175000 11591 7355.7 10617 7620.3 5040.9 11450 6470.1 9189 8491.8 3905.9 10964 6950.2 10681 7869.7 5466.8 11285 6572.7 9422.5 8293.1 3890.5 1 1 1 1 1 1 1 1 1 1 2024 1135 1778 1877 2255 2255 1976;1977;4882 IASDVKPK 8 Phospho (STY) _IAS(ph)DVKPK_ IAS(1)DVKPK IAS(42.39)DVKPK 0 0 1 1 Q5T5J6 Q5T5J6 Q5T5J6 SWT1 Transcriptional protein SWT1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.3271484375 3 313.163326 936.468148 42811.4469122662 1.8985 0.00059453 731770 229.16 731770 229.16 542.326483867019 42.297 0.68718 42.297 41.994 42.681 7.1054E-15 75 23 5 0.936337981243863 0.00988403737557349 0.190963009307133 0.0397 1 9644 42.395 17.54 1 111040000 110490 43945 105740 27199 30871 85844 28972 52824 36176 3122.4 104540 41418 105830 29892 35729 83020 29779 54360 35389 4162.7 1 1 1 1 1 1 1 1 1 1 2025 1186 1779 1878 2256 2256 2078 IATGSFLKR 9 Phospho (STY) _IATGS(ph)FLKR_ IAT(0.123)GS(0.877)FLKR IAT(-8.54)GS(8.54)FLKR 0 0 1 1 P22234 P22234 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 510.966003417969 3 358.189875 1071.5478 43798.9234937325 1.1518 0.00041257 426520 152.78 426520 152.78 510.965117977759 70.156 0.40112 70.156 69.932 70.333 0 32 13 3 0.910633725998974 0.000952534638218419 0.0244093482162693 0.0093214 1 16466 75.695 52.319 2 8951400 5996.7 5774.6 5143.4 5514.7 7640.9 5754.1 6720.8 7030.9 5135.8 1284.1 5671.2 5453.6 5257 5682 7592 5775.4 6842 7041.7 5134.7 1371.9 1 1 1 1 1 1 1 1 1 1 2026 456 1780 1879 2257 2257 744 IATQSQITPPGTPSSALSSGEQR 23 Phospho (STY) _IATQSQIT(ph)PPGTPSSALSSGEQR_ IATQS(0.004)QIT(0.995)PPGTPSSALSSGEQR IAT(-35.84)QS(-23.63)QIT(23.63)PPGT(-40.55)PS(-59.27)S(-63.39)ALS(-73.79)S(-77.07)GEQR 0 0 1 0 Q8N0Z3 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.108581542969 3 798.382992 2392.12715 33896.5708375142 1.7868 0.0014266 95680 76.389 95682 76.391 875.441538324798 63.733 0.69261 63.733 63.343 64.035 0 51 23 4 0.806349416333035 0.00154169964815427 0.0120470635959348 0.00011611 1 14955 101.74 85.514 8 10524000 4851.4 7925 7196.6 7646.7 8359.2 6702 7661.1 6336.3 7563.4 13996 4599.5 7484.9 7124.6 7853.2 8404.3 6781.7 7829.2 6791.7 7467 13325 1 1 1 1 1 1 1 1 1 1 2027 1448 1781 1880 2258 2258 4669 ICSFEEAK 8 Phospho (STY) _ICS(ph)FEEAK_ ICS(1)FEEAK ICS(117.02)FEEAK 0 0 1 0 P16298 P16298 P16298 PPP3CB Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.376281738281 2 532.211933 1062.40931 35821.3826167288 1.8593 0.00098956 430590 229.16 430590 229.16 761.375464292015 68.687 0.67348 68.687 68.417 69.09 0 62 22 5 0.694820710995031 0.00243505134670424 0.0399947520267245 0.00092964 1 16095 117.02 61.473 1 36378000 45049 16994 43352 16509 23791 42049 22548 27222 19304 13067 42622 16051 43509 17391 25278 40847 22922 28274 19185 12934 1 1 1 1 1 1 1 1 1 1 2028 406 1782 1881 2259 2259 649 ICTLPSPPSPLASLAPVADSSTR 23 Phospho (STY) _ICTLPSPPS(ph)PLASLAPVADSSTR_ ICTLPSPPS(1)PLASLAPVADSSTR ICT(-76.75)LPS(-51.48)PPS(51.48)PLAS(-53.74)LAPVADS(-108.24)S(-106.85)T(-106.85)R 0 0 1 0 Q9UER7 Q9UER7 Q9UER7 DAXX Death domain-associated protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 883.122375488281 3 806.397585 2416.17093 32244.7971246369 1.807 0.0014572 94728 76.388 94729 76.39 883.120133784608 99.99 0.22193 99.99 99.892 100.11 1.4211E-14 32 7 6 0.982762756276821 0.0291578160054572 1 2.687E-12 1 23302 184.94 172.11 7 272840000 18989 31527 23188 29594 15916 23913 17880 27227 27994 42329 17984 29771 23023 30413 16619 24344 18383 28457 27193 40488 1 1 1 1 1 1 1 1 1 1 2029 2135 1783 1882 2260 2260 3840 ICVRHCNVVK 10 Unmodified _ICVRHCNVVK_ 0 0 0 1 Q9Y4G6 Q9Y4G6 Q9Y4G6 TLN2 Talin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 872.001403808594 2 642.836817 1283.65908 33787.2471453893 1.2744 0.00081926 356490 229.16 356490 229.16 872.000788392657 88.184 0.45728 88.184 87.967 88.424 0 37 15 3 0.457819970629888 0.00405968004767539 0.140034285584583 0.05466 1 20593 29.347 5.3609 1 30568000 12366 13967 11591 13737 25965 11798 23680 16491 12403 17840 11699 13192 11888 14087 25457 12005 23905 16898 12716 17180 1 1 1 1 1 1 1 1 1 1 2030 2280 1784 1883 2261 2261 IDAGTMAEPSASPSK 15 Phospho (STY) _IDAGTMAEPSAS(ph)PSK_ IDAGTMAEPS(0.003)AS(0.985)PS(0.012)K IDAGT(-74.93)MAEPS(-25.24)AS(19.08)PS(-19.08)K 0 0 1 0 Q8IXQ3 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.331970214844 3 514.556623 1540.64804 39929.0439356624 2.2168 0.0011407 296910 152.78 296910 152.78 667.333942518941 60.225 0.66627 60.225 59.822 60.489 7.1054E-15 40 22 3 0.657907938602114 0.000839701826930179 0.0135111050763219 0.00014294 1 14146 106.75 88.384 4 10357000 10135 10455 11370 12994 7266.6 10336 9990.3 11695 12448 10683 9594.6 9890.7 11333 13145 7657.2 10516 10106 12000 12178 10330 1 1 1 1 1 1 1 1 1 1 2031 1427 1785 1884 2262 2262 2599;2600 IDASKNEEDEGHSNSSPR 18 Phospho (STY) _IDASKNEEDEGHSNSS(ph)PR_ IDASKNEEDEGHSNS(0.01)S(0.99)PR IDAS(-153.77)KNEEDEGHS(-48.33)NS(-19.97)S(19.97)PR 0 0 1 1 Q14103 Q14103 Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.726013183594 3 684.614917 2050.82292 34087.6288724808 1.5761 0.001079 223160 152.78 223160 152.78 837.724921680553 33.919 1.4185 33.919 33.587 35.006 0 177 48 7 0.985832718448399 0.00478362200300116 0.0771273068393932 5.3503E-17 2 7545 248.16 222.93 4 1045300000 29110 41300 30864 38173 38000 33921 62688 51241 40911 7389.2 27552 38997 31112 39318 38470 34421 62029 50950 41291 8143.7 2 2 2 2 2 2 2 2 2 2 2032 985 1786 1885 2263;2264 2263 1662;1663 IDEFESM 7 Phospho (STY) _IDEFES(ph)M_ IDEFES(1)M IDEFES(77.92)M 0 0 1 0 P26038 P26038 P26038 MSN Moesin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.246520996094 2 475.664284 949.314015 42838.9097791996 1.181 0.00056175 240890 114.58 240890 114.58 590.24591970155 86.184 0.83429 86.184 85.842 86.676 -1.4211E-14 51 28 3 0.819450637321306 0.00126476805168493 0.095359823317538 0.01603 1 20108 77.923 57.619 1 7466900 6459.8 4691.5 6474.2 5409.7 7831.6 6163.1 7950 6515.9 6466.4 9361.3 6112.7 4436 6535.2 5522.8 7867.7 6166.1 8046.1 6804.4 6443.3 8965.5 1 1 1 1 1 1 1 1 1 1 2033 478 1787 1886 2265 2265 790 IDEPLEGSEDR 11 Unmodified _IDEPLEGSEDR_ 0 0 0 0 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.875366210938 2 630.291139 1258.56773 36270.734420532 1.6186 0.0010202 181790 114.58 181790 114.58 744.8726879009 52.282 0.86192 52.282 51.921 52.783 0 104 29 5 0.985715291786256 0.00111784873255068 0.0157305250883516 1.4907E-14 1 12116 236.35 161.43 1 389730000 37556 32140 34691 33614 26238 33841 30406 30697 30707 9989.9 35527 30370 35001 34427 27185 33890 30759 31214 30286 10117 1 1 1 1 1 1 1 1 1 1 2034 752 1788 1887 2266 2266 IDFDSVSSIMASSQ 14 Oxidation (M),Phospho (STY) _IDFDSVSSIM(ox)ASS(ph)Q_ IDFDSVSSIM(1)ASSQ IDFDSVSSIMAS(0.001)S(0.999)Q IDFDSVSSIM(152.74)ASSQ IDFDS(-114.44)VS(-98.4)S(-89.65)IMAS(-32.61)S(32.61)Q 0 1 1 0 Q9UBQ5 Q9UBQ5 Q9UBQ5 EIF3K Eukaryotic translation initiation factor 3 subunit K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 906.403442382813 2 791.820761 1581.62697 34317.1858077975 1.1538 0.00091362 144700 114.58 144710 114.58 906.40039248761 87.778 0.89666 87.778 87.47 88.366 0 50 30 2 0.785139910747013 0.000708829490334479 0.0182233961090337 7.993E-07 1 20443 152.74 135.01 5 9109300 3879.7 4171 4899.1 3998.5 4475.6 4350.1 5105.1 5697.4 4733.7 32553 3675 3939.2 4870.5 4121.7 4575.4 4422.8 5156.1 6643.6 4686.5 30784 1 1 1 1 1 1 1 1 1 1 2035 2126 1789 1888 2267 2267 224 3825 IDFDSVSSIMASSQ 14 Phospho (STY) _IDFDSVSSIMASS(ph)Q_ IDFDSVSSIMAS(0.001)S(0.999)Q IDFDS(-122.72)VS(-102.75)S(-92.26)IMAS(-31.57)S(31.57)Q 0 0 1 0 Q9UBQ5 Q9UBQ5 Q9UBQ5 EIF3K Eukaryotic translation initiation factor 3 subunit K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 898.40478515625 2 783.823304 1565.63205 33168.2419211798 1.4488 0.0011356 146180 114.58 146180 114.58 898.401680568422 100.96 0.43136 100.96 100.78 101.22 0 36 14 4 0.887606488985725 0.0046570259561768 0.255011430926075 1.2286E-15 2 23673 224.43 206.27 5 46757000 25318 27519 28311 26826 27466 29176 28612 36244 28831 179630 23968 25992 28327 27625 27939 29567 29076 41494 28438 169980 2 2 2 2 2 2 2 2 2 2 2036 2126 1789 1889 2268;2269 2269 3825 IDFSSIAVPGTSSPR 15 Phospho (STY) _IDFSSIAVPGTS(ph)SPR_ IDFSSIAVPGT(0.137)S(0.431)S(0.431)PR IDFS(-53.83)S(-53.83)IAVPGT(-4.97)S(0)S(0)PR 0 0 1 0 Q5TDH0 Q5TDH0 Q5TDH0 DDI2 Protein DDI1 homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.3125 3 538.590544 1612.7498 40186.5351832184 0.98362 0.00052977 141830 76.387 141830 76.388 614.978006391705 91.192 0.6013 91.192 90.936 91.538 0 64 20 4 0.711943103057944 0.00152115036145243 0.0102111581593771 0.010551 1 21234 72.615 51.838 5 49925000 3860.2 3985.9 3973.9 4216.9 3259.5 4078.1 3266.6 4025.9 4495.1 5754.1 3653.2 3766.7 3986.2 4313.4 3351.2 4104 3358.4 4213.6 4383.2 5511.3 1 1 1 1 1 1 1 1 1 1 2037 1193 1790 1890 2270 2270 2085;2086 IDGATQSSPAEPK 13 Phospho (STY) _IDGATQSS(ph)PAEPK_ IDGATQS(0.134)S(0.865)PAEPK IDGAT(-41.49)QS(-8.09)S(8.09)PAEPK 0 0 1 0 Q32MZ4 Q32MZ4 Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.647338867188 3 460.87294 1379.59699 41051.1876893387 0.19863 9.1542E-05 331490 152.78 331490 152.78 613.648402981488 47.292 0.50537 47.292 46.976 47.481 7.1054E-15 39 21 2 0.943711290655943 0.00181864053890331 0.00468553921795486 6.5538E-05 2 10919 124.43 92.159 3 97953000 64630 44508 70169 47551 35442 66325 44578 49498 47591 10792 61178 42062 69930 48940 38149 65452 45020 50627 46830 11308 2 2 2 2 2 2 2 2 2 2 2038 1125 1791 1891 2271;2272 2271 1960 IDISPSTFR 9 Phospho (STY) _IDIS(ph)PSTFR_ IDIS(0.999)PS(0.001)TFR IDIS(32.96)PS(-32.96)T(-53.89)FR 0 0 1 0 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.842956542969 2 558.260272 1114.50599 37918.4751029006 1.7347 0.00096843 205250 114.58 205250 114.58 672.842354287419 82.981 2.3783 82.981 82.314 84.692 0 244 82 6 0.995416868376334 0.0254833999226808 0.471941925666255 2.9356E-09 2 19476 193.87 104.92 3 854130000 55400 81347 54960 71260 102120 60681 100150 85011 75034 31139 52421 76788 55941 73613 100790 61660 101350 85267 75102 31289 2 2 2 2 2 2 2 2 2 2 2039 2257 1792 1892 2273;2274 2274 4175 IDISPSTFRK 10 Phospho (STY) _IDIS(ph)PSTFRK_ IDIS(0.959)PS(0.041)TFRK IDIS(13.67)PS(-13.67)T(-39.27)FRK 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 567.983947753906 3 415.207594 1242.60095 40927.5330397182 2.0146 0.00083646 367950 152.78 367950 152.78 567.982507822192 77.659 1.0363 77.659 77.225 78.261 0 116 35 5 0.993706495519927 0.00918906765705828 0.148313628851292 0.0001504 1 18196 120.84 89.36 3 44183000 14843 17833 15271 17608 34917 13112 32035 21944 16807 9902.1 14047 16845 15588 18020 34219 13473 32330 21968 17230 9831.8 1 1 1 1 1 1 1 1 1 1 2040 2257 1793 1893 2275 2275 4175 IDISPSTLR 9 Phospho (STY) _IDIS(ph)PSTLR_ IDIS(0.99)PS(0.01)TLR IDIS(19.96)PS(-19.96)T(-41.56)LR 0 0 1 0 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.851501464844 2 541.268097 1080.52164 38277.4487476328 2.0225 0.0010947 211690 114.58 211690 114.58 655.849955567793 76.994 1.818 76.994 76.387 78.205 0 221 62 7 0.991593060382401 0.00259689696479474 0.104275547258882 4.3823E-09 2 17972 184.27 94.006 3 672500000 31081 32767 30664 30972 24807 32589 25613 30243 33280 12168 29409 30944 30830 31936 25538 32587 26243 30794 32512 12158 2 2 2 2 2 2 2 2 2 2 2041 2072 1794 1894 2276;2277 2276 3748 IDISPSTLRK 10 Phospho (STY) _IDIS(ph)PSTLRK_ IDIS(0.876)PS(0.124)TLRK IDIS(8.49)PS(-8.49)T(-36.08)LRK 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.655212402344 3 403.879478 1208.6166 41811.1938440079 1.5414 0.00062256 378270 152.78 378270 152.78 556.654690250508 73.177 1.0071 73.177 72.749 73.756 0 110 34 4 0.875388277270902 0.00440027019937117 0.0903262186658381 0.00019393 1 17140 115.57 67.862 3 98729000 17668 16869 17952 16897 17567 17439 21307 18478 16074 2885.7 16719 15936 18062 17356 17897 17474 21366 18582 16083 3144.9 1 1 1 1 1 1 1 1 1 1 2042 2072 1795 1895 2278 2278 3748 IDLPEYQGEPDEISIQK 17 Unmodified _IDLPEYQGEPDEISIQK_ 0 0 0 0 Q9BY32 Q9BY32 Q9BY32 ITPA Inosine triphosphate pyrophosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.772766113281 3 658.661594 1972.96295 35749.4206884566 1.7533 0.0011549 231950 152.78 231950 152.78 811.771722679685 86.811 0.43725 86.811 86.561 86.998 1.4211E-14 39 14 4 0.65240733930147 0.00232255629673123 0.027581384631193 5.1544E-05 1 20260 121.45 97.697 1 12076000 11144 10672 12010 11453 14853 11133 16461 11770 12495 16605 10548 10086 12082 11707 14924 11213 16570 12282 12497 15908 1 1 1 1 1 1 1 1 1 1 2043 1868 1796 1896 2279 2279 IDRDSYSPR 9 Phospho (STY) _IDRDSYS(ph)PR_ IDRDSYS(1)PR IDRDS(-33.93)Y(-65.37)S(33.93)PR 0 0 1 1 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.335998535156 2 594.755885 1187.49722 36492.3896424807 1.4807 0.00088067 192650 114.58 192650 114.58 709.337120492233 36.036 0.66213 36.036 35.71 36.372 0 42 22 3 0.955000842309036 0.000932794939726786 0.0175591081828989 0.00045313 1 8086 111.53 59.039 3 16819000 13116 10546 11936 12368 10347 13574 10972 11682 12218 3923.5 12407 9972.4 12068 12607 10604 13536 11173 11909 12003 3964.8 1 1 1 1 1 1 1 1 1 1 2044 1774 1797 1897 2280 2280 3265 IDSNISPK 8 Phospho (STY) _IDSNIS(ph)PK_ IDSNIS(1)PK IDS(-36.39)NIS(36.39)PK 0 0 1 0 Q9H501 Q9H501 Q9H501 ESF1 ESF1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.384338378906 2 477.220615 952.426677 37498.022528353 1.7498 0.00083503 480200 229.16 480210 229.16 706.383800887953 55.133 0.81227 55.133 54.782 55.594 7.1054E-15 80 27 5 0.899016595489387 0.00405447902934587 0.0258544566362848 0.0066597 1 12842 92.112 23.576 2 128870000 71552 60179 74222 59924 38820 68879 44349 54780 62388 12227 67717 56847 74161 61688 41581 68487 45372 55863 60793 12781 1 1 1 1 1 1 1 1 1 1 2045 1942 1798 1898 2281 2281 3517 IDSTEVIYQPR 11 Phospho (STY) _IDS(ph)TEVIYQPR_ IDS(0.553)T(0.447)EVIYQPR IDS(0.92)T(-0.92)EVIY(-80.69)QPR 0 0 1 0 Q15831 Q15831 Q15831 STK11 Serine/threonine-protein kinase STK11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.408935546875 2 700.826507 1399.63846 33238.7506451303 1.9249 0.0013491 163490 114.58 163500 114.58 815.407705615608 67.407 0.67456 67.407 67.119 67.794 0 59 22 3 0.997284063017548 0.0034964646459727 0.216559465374119 6.5954E-08 1 15816 174.29 137.62 3 30140000 15762 22827 16580 19309 20988 17204 24794 23191 22793 26112 14918 21544 16709 20006 21090 17463 25000 23817 22575 25125 1 1 1 1 1 1 1 1 1 1 2046 1097 1799 1899 2282 2282 1899 IDSVAAQPTATSPVVYTR 18 Phospho (STY) _IDSVAAQPTAT(ph)SPVVYTR_ IDSVAAQPT(0.018)AT(0.665)S(0.317)PVVYTR IDS(-67.2)VAAQPT(-15.75)AT(3.22)S(-3.22)PVVY(-59.05)T(-33.5)R 0 0 1 0 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.042358398438 3 652.653984 1954.94012 35734.5094244825 1.8851 0.0012303 117040 76.388 117040 76.389 729.375741735287 66.325 0.52424 66.325 66.049 66.573 0 40 17 4 0.806126892291235 0.00228235273013684 0.0626369147338609 0.00010231 1 15567 103.84 79.799 6 18977000 9011.7 9891.5 9158.5 9661.4 8400.3 11353 8938.8 8541.4 10242 7041.3 8527.9 9342.8 9205.4 9961.2 8578.2 11282 9108.8 8888.8 10050 6827.9 1 1 1 1 1 1 1 1 1 1 2047 654 1800 1900 2283 2283 1087;4470 IDSVAAQPTATSPVVYTRPAISSFSSSGIGFGESLK 36 Phospho (STY) _IDSVAAQPTATS(ph)PVVYTRPAISSFSSSGIGFGESLK_ IDSVAAQPT(0.009)AT(0.205)S(0.694)PVVY(0.027)T(0.029)RPAIS(0.007)S(0.007)FS(0.007)S(0.007)S(0.007)GIGFGESLK IDS(-42.39)VAAQPT(-19.1)AT(-5.31)S(5.31)PVVY(-14.17)T(-13.8)RPAIS(-19.79)S(-19.79)FS(-19.79)S(-19.79)S(-19.79)GIGFGES(-35.23)LK 0 0 1 1 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1042.79516601563 4 927.710561 3706.81314 30236.8581883839 0.8895 0.0008252 123510 114.58 123510 114.58 1042.79405205957 99.222 0.17108 99.222 99.151 99.322 0 23 5 7 NaN 0 0 0.0086222 1 23057 66.143 48.927 12 274150000 4573.1 5854.5 3859.5 4535.8 2011.9 5437.6 5693.1 6679.8 7614.2 93793 4324.7 5523.1 3911.6 4752.2 2204.6 5602.3 5670.9 9478.3 7431.4 88472 1 1 1 1 1 1 1 1 1 1 2048 654 1801 1901 2284 2284 1087;4470 IDTIEIITDR 10 Unmodified _IDTIEIITDR_ 0 0 0 0 P22626 P22626 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.408935546875 2 594.82716 1187.63977 37640.5505624858 1.7772 0.0010571 192630 114.58 192630 114.58 709.408563371127 86.986 0.53016 86.986 86.732 87.263 0 53 17 4 0.954460206748627 0.00334885371539122 0.0688791104760136 2.5309E-09 1 20278 199.86 133.43 1 35751000 20271 23140 21415 23345 20680 21586 22940 24878 24079 10943 19186 21861 21493 23929 21062 21777 23274 25157 23710 10880 1 1 1 1 1 1 1 1 1 1 2049 459 1802 1902 2285 2285 IDTPPACTEESIATPSEIKTENDTVESV 28 Phospho (STY) _IDT(ph)PPACTEESIATPSEIKTENDTVESV_ IDT(0.999)PPACT(0.001)EESIATPSEIKTENDTVESV IDT(32.26)PPACT(-32.26)EES(-76.17)IAT(-105.42)PS(-109.31)EIKT(-112.87)ENDT(-115.53)VES(-115.41)V 0 0 1 1 O94913 O94913 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1191.5751953125 3 1038.46338 3112.3683 28134.4571247588 1.6572 0.0017209 147120 152.78 147120 152.78 1191.57302605422 82.9 0.28815 82.9 82.655 82.943 1.4211E-14 14 9 2 0.863496870668906 0.00103802920463781 0.00542338135613272 0.0001462 1 19396 121.19 109.4 8 7464700 1243.2 1535.5 1520.4 1539.6 1202.4 1433.4 1404.2 2864.9 1226.1 29937 1177.4 1450.6 1511.5 1578.8 1241.7 1515.9 1414.7 3720.3 1217.3 28256 1 1 1 1 1 1 1 1 1 1 2050 227 1803 1903 2286 2286 4353 IEADSESQEDIIR 13 Unmodified _IEADSESQEDIIR_ 0 0 0 0 P55957 P55957 P55957 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.44091796875 2 752.859917 1503.70528 NaN NaN NaN NaN NaN NaN NaN NaN 58.077 1 58.077 57.577 58.577 0 NaN NaN NaN 2.3385E-07 1 13598 149.41 111.68 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2051 726 1804 1904 2287 2287 IECDDKGDGSCDVR 14 Unmodified _IECDDKGDGSCDVR_ 0 0 0 1 P21333;Q14315 P21333;Q14315 P21333 FLNA;FLNC Filamin-A;Filamin-C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.330627441406 3 542.555855 1624.64573 37751.9108441372 2.088 0.0011328 281580 152.77 281590 152.78 695.66516889287 38.984 0.61366 38.984 38.668 39.282 0 77 20 6 0.923952337516141 0.00447917292502947 0.0989507991775529 1.2842E-06 1 8819 154.46 116.78 1 64036000 24172 34019 23122 30939 38569 23144 42602 32060 33367 3896.2 22869 32119 23540 31830 38276 23665 42919 31930 33315 4410.7 1 1 1 1 1 1 1 1 1 1 2052 451;1007 1805 1905 2288 2288 IEDFLER 7 Unmodified _IEDFLER_ 0 0 0 0 P46781 P46781 P46781 RPS9 40S ribosomal protein S9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 575.820190429688 2 461.23745 920.460347 41852.9000527121 1.6659 0.0007684 248420 114.58 248420 114.58 575.818921567859 82.665 0.51517 82.665 82.428 82.943 0 30 17 2 0.98325993363249 0.000925268670208592 0.0269918864956568 0.034541 1 19346 86.953 45.651 1 4962200 8756.1 7438 7721.4 6391.2 5495.3 8427.6 4713 6968.5 7445.8 5699.5 8281.7 7020.4 7805.7 6658.9 5699.6 8349 4909.8 7218.2 7230.9 5528.1 1 1 1 1 1 1 1 1 1 1 2053 613 1806 1906 2289 2289 IEDVGSDEEDDSGK 14 Phospho (STY) _IEDVGS(ph)DEEDDSGK_ IEDVGS(1)DEEDDSGK IEDVGS(70.33)DEEDDS(-70.33)GK 0 0 1 0 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1016.95227050781 2 787.790712 1573.56687 31255.8322485738 1.0898 0.00085853 290890 229.16 290890 229.16 1016.95394965427 54.67 5.4093 54.67 54.268 59.678 -7.1054E-15 528 185 5 0.980862752208188 0.00132179434385039 0.00951103153488163 6.2165E-42 3 12702 352.73 326.02 2 231230000 114190 149970 120350 158720 79867 119340 87882 127570 169340 19313 108080 141720 120350 161800 83630 121520 91302 128230 163630 21138 3 3 3 3 3 3 3 3 3 3 2054 331 1807 1907 2290;2291;2292 2290 539 IEDVGSDEEDDSGK 14 Phospho (STY) _IEDVGS(ph)DEEDDSGK_ IEDVGS(1)DEEDDSGK IEDVGS(105.19)DEEDDS(-105.19)GK 0 0 1 0 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.305786132813 3 525.529567 1573.56687 37469.9810061582 1.3179 0.00069259 290710 152.78 290710 152.78 678.305029046023 54.659 6.5978 54.659 54.119 60.716 0 668 226 5 0.955574102352173 0.0072812378387785 0.081008423630314 1.5547E-10 3 13082 184.99 165.15 2 299220000 57243 70869 60130 68630 47414 63282 48655 61292 81010 21056 54177 66934 60228 70518 48915 63684 50353 62192 78560 21245 3 3 3 3 3 3 3 3 3 3 2055 331 1807 1907 2293;2294;2295 2293 539 IEDVGSDEEDDSGK 14 Phospho (STY) _IEDVGS(ph)DEEDDSGK_ IEDVGS(1)DEEDDSGK IEDVGS(61.85)DEEDDS(-61.85)GK 0 0 1 0 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1016.95489501953 2 787.790712 1573.56687 31028.875084306 1.3412 0.0010566 290890 229.16 290890 229.16 1017.45556956417 57.905 2.003 57.905 57.704 59.707 0 122 68 2 0.947818459951219 0.000847097365488068 0.0402790235210083 2.539E-16 1 13878 245.26 218.3 2 27313000 10993 15105 10283 11976 7673.6 11306 7489.9 9903.3 14534 7860 10400 14251 10363 12476 7945.3 11359 7825.8 10225 14041 7630.3 1 1 1 1 1 1 1 1 1 1 2056 331 1807 1907 2296 2296 539 IEDVGSDEEDDSGKDK 16 Phospho (STY) _IEDVGS(ph)DEEDDSGKDK_ IEDVGS(1)DEEDDSGKDK IEDVGS(52.62)DEEDDS(-52.62)GKDK 0 0 1 1 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.733337402344 3 606.570202 1816.68878 33978.7249400847 2.0197 0.0012251 377800 229.16 377800 229.16 836.067212403289 53.486 7.2763 53.486 53.066 60.343 0 929 249 7 0.99341509989349 0.00166900724668315 0.00786779720349597 1.2632E-22 4 12392 250.98 216.97 2 1722900000 115020 139590 117130 137710 91633 113550 94142 121340 146910 150350 108840 131850 117520 141120 94581 115280 97153 125940 142720 144380 4 4 4 4 4 4 4 4 4 4 2057 331 1808 1908 2297;2298;2299;2300 2297 539 IEDVGSDEEDDSGKDK 16 Phospho (STY) _IEDVGS(ph)DEEDDSGKDK_ IEDVGS(1)DEEDDSGKDK IEDVGS(99.37)DEEDDS(-99.37)GKDK 0 0 1 1 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.050964355469 4 455.179471 1816.68878 39204.0020747341 1.8037 0.00082103 377590 171.87 377590 171.87 627.302189856038 53.478 3.1897 53.478 53.147 56.337 -7.1054E-15 385 108 6 0.808238498514384 0.00125895213892703 0.013305696974317 1.7987E-10 2 12917 178.88 161.08 2 149930000 51160 43107 55380 37547 26195 53328 28355 40700 44710 7877.4 48426 40690 55169 39145 28352 52605 29207 41552 43422 8359.5 2 2 2 2 2 2 2 2 2 2 2058 331 1808 1908 2301;2302 2302 539 IEDVGSDEEDDSGKDK 16 Phospho (STY) _IEDVGS(ph)DEEDDSGKDK_ IEDVGS(1)DEEDDSGKDK IEDVGS(63.52)DEEDDS(-63.52)GKDK 0 0 1 1 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.738342285156 3 606.570202 1816.68878 NaN NaN NaN NaN NaN NaN NaN NaN 60.032 1 60.032 59.532 60.532 0 NaN NaN NaN 1.5976E-08 1 14072 146.13 124.76 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2059 331 1808 1908 2303 2303 539 IEDVGSDEEDDSGKDK 16 Phospho (STY) _IEDVGS(ph)DEEDDSGKDK_ IEDVGS(0.999)DEEDDS(0.001)GKDK IEDVGS(28.91)DEEDDS(-28.91)GKDK 0 0 1 1 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.736083984375 3 606.570202 1816.68878 NaN NaN NaN NaN NaN NaN NaN NaN 60.137 1 60.137 59.637 60.637 0 NaN NaN NaN 3.7658E-06 1 14098 137.09 109.76 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2060 331 1808 1908 2304 2304 539 IEDVGSDEEDDSGKDKK 17 Phospho (STY) _IEDVGS(ph)DEEDDSGKDKK_ IEDVGS(1)DEEDDSGKDKK IEDVGS(108.78)DEEDDS(-108.78)GKDKK 0 0 1 2 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.618103027344 4 487.203212 1944.78374 36759.7148803248 1.716 0.00083606 470360 229.16 470370 229.16 716.616830250882 52.065 6.7975 52.065 51.343 58.141 -7.1054E-15 821 234 8 0.732029258770714 0.00443478833577745 0.0632661781477209 9.7582E-12 5 13137 210.38 173 2 1260500000 85161 98177 89352 104290 72668 93565 76002 89329 105700 35497 80600 92780 89534 106540 74804 94278 78017 90838 103040 35492 5 5 5 5 5 5 5 5 5 5 2061 331 1809 1909 2305;2306;2307;2308;2309 2306 539 IEDVGSDEEDDSGKDKK 17 Phospho (STY) _IEDVGS(ph)DEEDDSGKDKK_ IEDVGS(1)DEEDDSGKDKK IEDVGS(71.75)DEEDDS(-71.75)GKDKK 0 0 1 2 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 955.153564453125 3 649.268523 1944.78374 32008.7236184005 1.3784 0.00089492 470610 305.55 470610 305.55 955.153271124876 52.087 3.7029 52.087 51.718 55.421 0 276 128 6 0.557217055990829 0.000907297356330943 0.00494716930994117 5.5452E-31 3 12317 290.98 255.94 2 198230000 70499 83310 70853 79106 57183 74385 54661 75624 95395 32512 66711 78676 71153 81404 58839 74847 56877 76788 92399 32364 3 3 3 3 3 3 3 3 3 3 2062 331 1809 1909 2310;2311;2312 2310 539 IEDVGSDEEDDSGKDKK 17 Phospho (STY) _IEDVGS(ph)DEEDDSGKDKK_ IEDVGS(1)DEEDDSGKDKK IEDVGS(80.97)DEEDDS(-80.97)GKDKK 0 0 1 2 P08238;Q58FF8 P08238 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.820495605469 3 649.268523 1944.78374 NaN NaN NaN NaN NaN NaN NaN NaN 53.679 1 53.679 53.179 54.179 0 NaN NaN NaN 2.119E-13 1 12515 187.47 175.2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2063 331 1809 1909 2313 2313 539 IEDVTPIPSDSTR 13 Phospho (STY) _IEDVTPIPSDS(ph)TR_ IEDVTPIPSDS(0.796)T(0.204)R IEDVT(-106.14)PIPS(-52.16)DS(5.92)T(-5.92)R 0 0 1 0 P62263 P62263 P62263 RPS14 40S ribosomal protein S14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.929809570313 2 755.345261 1508.67597 33157.0469683995 1.8075 0.0013653 151690 114.58 151700 114.58 869.926084593554 68.624 1.1888 68.624 68.185 69.374 0 90 40 3 0.953399402678236 0.00137568124433 0.0382663493694535 5.2174E-11 1 16074 205.3 162.87 4 17753000 12725 12648 11505 12431 10627 12329 11432 12041 14573 16398 12037 11947 11645 12775 10851 12390 11684 12583 14246 15719 1 1 1 1 1 1 1 1 1 1 2064 759 1810 1910 2314 2314 1243 IEEEEQEPEPPEPFEYIDD 19 Unmodified _IEEEEQEPEPPEPFEYIDD_ 0 0 0 0 Q99460 Q99460 Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.054016113281 3 778.665509 2332.9747 33615.5809117508 1.7405 0.0013552 98101 76.388 98102 76.389 855.387206917355 96.034 0.69659 96.034 95.679 96.375 0 112 23 6 0.915554368321257 0.0035218776507997 0.121442211033445 0.0016794 1 22291 97.502 79.363 1 64965000 3075.8 4593.1 3151.1 4321.6 4091.6 3819.3 3654 4557.6 3732.5 16039 2910.8 4337.4 3179.3 4445.8 4090.5 3890.1 3742.6 5026.3 3679.6 15209 1 1 1 1 1 1 1 1 1 1 2065 1766 1811 1911 2315 2315 IEEELGSKAK 10 Phospho (STY) _IEEELGS(ph)KAK_ IEEELGS(1)KAK IEEELGS(88.28)KAK 0 0 1 1 P06733 P06733 P06733 ENO1 Alpha-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.355346679688 3 395.191721 1182.55333 40938.9657835448 1.9304 0.00076287 579880 229.16 579880 229.16 624.354670577336 62.763 0.52857 62.763 62.461 62.99 0 41 17 3 0.800104879313042 0.00147889374421877 0.0126388815485135 0.0042055 1 14767 88.282 40.367 1 16096000 9022.2 10997 10047 10820 12612 9196.7 12282 11129 11061 2890.8 8541.1 10387 10088 11094 12641 9320.4 12484 11175 10966 2979.6 1 1 1 1 1 1 1 1 1 1 2066 314 1812 1912 2316 2316 516 IEEVLSPEGSPSKSPSK 17 Phospho (STY) _IEEVLSPEGSPSKS(ph)PSK_ IEEVLSPEGS(0.027)PS(0.092)KS(0.845)PS(0.037)K IEEVLS(-38.11)PEGS(-15.03)PS(-9.65)KS(9.65)PS(-13.59)K 0 0 1 1 Q9UEY8 Q9UEY8 Q9UEY8 ADD3 Gamma-adducin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.129760742188 3 617.630956 1849.87104 34635.7306770689 2.2555 0.0013931 371040 229.16 371040 229.16 847.128250974913 72.78 0.58471 72.78 72.485 73.069 0 76 19 5 0.936117254400592 0.00491327404971036 0.0770939204012251 8.9733E-09 1 17058 175.23 136.99 5 43880000 18497 24840 21655 26357 24845 23907 27710 25388 28286 16924 17515 23474 21669 26930 25066 24123 28085 25918 27886 16524 1 1 1 1 1 1 1 1 1 1 2067 2136 1813 1913 2317 2317 3843 IEEVPELPLVVEDK 14 Unmodified _IEEVPELPLVVEDK_ 0 0 0 0 P36578 P36578 P36578 RPL4 60S ribosomal protein L4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.073181152344 3 536.962545 1607.8658 37205.6672703632 1.8335 0.00098451 284520 152.78 284520 152.78 690.071940805186 99.989 0.16512 99.989 99.892 100.06 0 14 5 4 0.393804495776988 0.000386362257735765 0.00823365522967374 0.00018955 1 23308 105.14 81.913 1 51917000 14789 14219 14280 14996 11284 13529 11791 16549 16366 21937 13992 13437 14373 15327 11639 13705 12103 17144 15954 21040 1 1 1 1 1 1 1 1 1 1 2068 556 1814 1914 2318 2318 IEHAPSPSSGGTLK 14 Phospho (STY) _IEHAPS(ph)PSSGGTLK_ IEHAPS(0.964)PS(0.036)SGGTLK IEHAPS(14.3)PS(-14.3)S(-33.26)GGT(-60.46)LK 0 0 1 0 Q14004 Q14004 Q14004 CDK13 Cyclin-dependent kinase 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.340698242188 3 487.564218 1459.67082 38959.6766440691 1.4815 0.00072235 313340 152.78 313350 152.78 640.340523838648 50.432 0.92505 50.432 49.954 50.879 0 59 31 3 0.81510024401874 0.00171157030907745 0.0230145140569375 0.00010242 1 11701 118.4 94.409 4 16007000 18363 12689 20810 13287 12349 17577 13869 16207 13863 7989.4 17385 11990 20713 13675 13053 17425 14044 16551 13679 7898.1 1 1 1 1 1 1 1 1 1 1 2069 984 1815 1915 2319 2319 1661 IEIESFYEGEDFSETLTR 18 Unmodified _IEIESFYEGEDFSETLTR_ 0 0 0 0 P11021 P11021 P11021 HSPA5 78 kDa glucose-regulated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.059875488281 3 722.335546 2163.98481 35437.3758587309 1.7212 0.0012433 105750 76.387 105750 76.389 799.057029842564 99.766 0.14354 99.766 99.693 99.836 0 13 4 4 0.98233575781083 0.00355921419902289 0.0647692636196552 6.3968E-11 1 23222 189.42 155.24 1 68288000 9636.2 10523 13485 11875 10794 10705 13085 12086 12066 35398 9132.8 9948.1 13329 12091 11144 10866 13182 13137 11949 33611 1 1 1 1 1 1 1 1 1 1 2070 358 1816 1916 2320 2320 IEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVK 36 Oxidation (M),Phospho (STY) _IEIIQPLLDM(ox)AAGTSNAAPVAENVTNNEGS(ph)PPPPVK_ IEIIQPLLDM(1)AAGTSNAAPVAENVTNNEGSPPPPVK IEIIQPLLDMAAGTSNAAPVAENVT(0.011)NNEGS(0.989)PPPPVK IEIIQPLLDM(135.71)AAGTSNAAPVAENVTNNEGSPPPPVK IEIIQPLLDMAAGT(-81.66)S(-75.18)NAAPVAENVT(-19.43)NNEGS(19.43)PPPPVK 0 1 1 0 O95104 O95104 O95104 SCAF4 Splicing factor, arginine/serine-rich 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.038513183594 5 750.971741 3749.82232 34389.2225282807 1.3956 0.001048 122060 91.665 122060 91.666 842.837864582747 101.05 0.37437 101.05 100.87 101.24 0 56 12 7 0.966465331797502 0.00886462128772166 0.0883278455058938 2.3097E-06 1 23706 135.71 118.69 4 79351000 7784.7 9315.2 6292.6 7647.9 10589 7552.3 11306 7781.1 12486 34819 7360.7 8790.2 6476 7952.8 10503 7642.8 11506 8845.3 12270 32967 1 1 1 1 1 1 1 1 1 1 2071 232 1817 1917 2321 2321 20 401 IEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVK 36 Phospho (STY) _IEIIQPLLDMAAGTSNAAPVAENVTNNEGS(ph)PPPPVK_ IEIIQPLLDMAAGTSNAAPVAENVTNNEGS(1)PPPPVK IEIIQPLLDMAAGT(-97.52)S(-90.62)NAAPVAENVT(-37.2)NNEGS(37.2)PPPPVK 0 0 1 0 O95104 O95104 O95104 SCAF4 Splicing factor, arginine/serine-rich 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1049.54736328125 4 934.464128 3733.82741 30510.5606576461 1.1101 0.0010374 122620 114.58 122620 114.58 1049.54751851344 102.44 0.52631 102.44 102.28 102.8 0 93 17 8 0.978457575642219 0.0399398046391735 0.276461720796773 1.2473E-12 1 24136 187.89 176.17 4 236910000 16385 17990 14739 18645 27126 16209 27795 19922 18187 107220 15498 16998 15089 19065 26797 16604 27998 23070 18352 101420 1 1 1 1 1 1 1 1 1 1 2072 232 1817 1918 2322 2322 401 IEIPVTPTGQSVPSSPSIPGTPTLK 25 Phospho (STY) _IEIPVTPTGQSVPSS(ph)PSIPGTPTLK_ IEIPVTPTGQSVPS(0.213)S(0.782)PS(0.005)IPGTPTLK IEIPVT(-70.14)PT(-62.87)GQS(-50.08)VPS(-5.65)S(5.65)PS(-22.37)IPGT(-54.98)PT(-59.79)LK 0 0 1 0 Q9H4Z3 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1015.22998046875 3 861.782093 2582.32445 31642.7150388161 1.6306 0.0014052 177280 152.78 177280 152.78 1014.55861946446 98.412 0.6114 98.412 98.109 98.72 0 76 20 5 0.954766887091186 0.00372933669628702 0.131574287126775 3.9178E-05 1 22805 123.21 108.28 8 39709000 3791.9 4421.8 4560.6 4252.8 4851.4 4688.4 5398.6 4142.6 4698 26308 3591 4176.1 4552.7 4383.9 4913.1 4722.7 5449.9 4969.2 4665.3 24868 1 1 1 1 1 1 1 1 1 1 2073 1941 1818 1919 2323 2323 3516 IEPEPFENCLLRPGSPAR 18 Phospho (STY) _IEPEPFENCLLRPGS(ph)PAR_ IEPEPFENCLLRPGS(1)PAR IEPEPFENCLLRPGS(131.32)PAR 0 0 1 1 P48637 P48637 P48637 GSS Glutathione synthetase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.063598632813 3 721.341523 2161.00274 35531.3584790855 1.5948 0.0011504 105900 76.387 105900 76.389 798.063151392148 84.037 0.57365 84.037 83.697 84.271 0 77 19 5 0.993190830046994 0.00615714000869245 0.083346610510836 1.3784E-05 1 19623 131.32 94.725 1 26554000 6614.1 10984 7451.1 9957.6 10154 8374.4 10109 9220.4 11163 11973 6261.8 10370 7487.7 10261 10145 8497.9 10321 9576.7 10970 11487 1 1 1 1 1 1 1 1 1 1 2074 625 1819 1920 2324 2324 1037 IEPIPGESPK 10 Phospho (STY) _IEPIPGES(ph)PK_ IEPIPGES(1)PK IEPIPGES(90.41)PK 0 0 1 0 O60841 O60841 O60841 EIF5B Eukaryotic translation initiation factor 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 535.628112792969 3 382.852928 1145.53696 41602.495254071 1.6522 0.00063253 399040 152.78 399050 152.78 535.627810703719 68.065 0.53475 68.065 67.824 68.359 0 43 17 3 0.983728844661605 0.00188003707740577 0.053765208276082 0.003603 1 15962 90.412 71.632 1 12816000 4892.3 7196.9 5326.5 8107.1 4348.4 4465.2 4364.6 6053.1 7983.9 1616 4631 6803.8 5326.6 8210 4474.2 4661.2 4541.1 6058.8 7724.2 1661.8 1 1 1 1 1 1 1 1 1 1 2075 160 1820 1921 2325 2325 273 IEQKEELDDVIALD 14 Unmodified _IEQKEELDDVIALD_ 0 0 0 1 Q9UBT2 Q9UBT2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.05712890625 3 543.945442 1628.8145 38388.5510630451 1.6508 0.00089792 280860 152.78 280870 152.78 696.720544820901 91.047 0.54893 91.047 90.734 91.283 0 47 18 3 0.971002167210616 0.00197901774601829 0.0266256133307795 0.016288 1 21182 83.692 63.028 1 28424000 4569.7 4916 3855.9 4710.1 5193.6 3781.6 3863.3 4885.8 5056.4 13597 4321.4 4642.8 3937.6 4833.8 5173.9 3871.4 4029.1 5267.8 4938.5 12916 1 1 1 1 1 1 1 1 1 1 2076 2129 1821 1922 2326 2326 IERPGEGSPMVDNPMR 16 Phospho (STY) _IERPGEGS(ph)PMVDNPMR_ IERPGEGS(1)PMVDNPMR IERPGEGS(158.99)PMVDNPMR 0 0 1 1 Q96T88 Q96T88 Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.663269042969 3 622.274233 1863.80087 37411.6981167829 1.5532 0.00096651 122760 76.388 122760 76.389 698.996179630969 58.669 0.75547 58.669 58.349 59.105 0 97 25 5 0.997642362955613 0.004221011983211 0.0530222877899377 2.7466E-07 1 13735 158.99 142.31 1 48143000 20442 17054 20425 17046 11129 23141 11254 16987 14710 7014.5 19343 16111 20454 17601 11847 22859 11544 17489 14368 6998.1 1 1 1 1 1 1 1 1 1 1 2077 1758 1822 1923 2327 2327 3242 IESDVQEPTEPEDDLDIMLGNK 22 Unmodified _IESDVQEPTEPEDDLDIMLGNK_ 0 0 0 0 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 983.161743164063 3 829.71962 2486.13703 31912.5579621693 1.7978 0.0014917 184130 152.78 184130 152.78 982.829576338793 98.332 0.84414 98.332 97.876 98.72 0 73 28 4 0.972423636852411 0.00446648027049757 0.162675602330886 3.1508E-05 1 22768 123.6 98.057 1 18744000 4676.2 5835 4387.9 7003.8 5667.7 5774.7 5484.3 6553 6881.1 31856 4423.8 5518.8 4450.3 7100.2 5674.7 5912.9 5629.6 7502.9 6730.3 30148 1 1 1 1 1 1 1 1 1 1 2078 443 1823 1924 2328 2328 IESFGSPK 8 Phospho (STY) _IESFGS(ph)PK_ IES(0.001)FGS(0.999)PK IES(-32.83)FGS(32.83)PK 0 0 1 0 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.874206542969 2 472.709883 943.405214 NaN NaN NaN NaN NaN NaN NaN NaN 66.838 1 66.838 66.338 67.338 0 NaN NaN NaN 0.021268 1 15696 80.916 43.408 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2079 655 1824 1925 2329 2329 1096 IESPKLER 8 Phospho (STY) _IES(ph)PKLER_ IES(1)PKLER IES(97.78)PKLER 0 0 1 1 Q92598 Q92598 Q92598 HSPH1 Heat shock protein 105 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.953430175781 3 351.177635 1050.51108 44068.0015869094 0.45816 0.0001609 435040 152.78 435040 152.78 503.952793832632 48.664 1.2658 48.664 48.276 49.542 0 163 43 5 0.955560558176051 0.00909232278623704 0.172471120254836 0.0020963 2 11238 97.779 50.22 1 1160200000 70848 48331 70259 44279 22019 64007 23160 45401 45633 2991.9 67038 45633 70193 46028 25230 63049 24135 46352 44073 3868 2 2 2 2 2 2 2 2 2 2 2080 1604 1825 1926 2330;2331 2330 2948 IETIEVMEDR 10 Unmodified _IETIEVMEDR_ 0 0 0 0 P51991 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.385925292969 2 617.802828 1233.5911 35727.7146005499 1.4972 0.00092495 185470 114.58 185470 114.58 732.384249666991 75.825 0.52308 75.825 75.572 76.095 0 62 17 4 0.912425223180187 0.00195805503261081 0.0443710239321418 5.7483E-06 1 17768 159.4 103.39 1 53050000 21516 18749 21890 19526 20239 21990 20911 20755 21363 9654.8 20361 17716 22002 20041 20646 21934 21266 21157 21060 9571.5 1 1 1 1 1 1 1 1 1 1 2081 686 1826 1927 2332 2332 IEVIEIMTDR 10 Unmodified _IEVIEIMTDR_ 0 0 0 0 P09651;Q32P51 P09651 P09651 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.40673828125 2 609.823563 1217.63257 37132.9811718105 1.6772 0.0010228 187890 114.58 187890 114.58 724.405333898147 99.403 0.34315 99.403 99.236 99.579 0 34 11 4 0.884049677783746 0.0038885955727227 0.326548817989341 1.9245E-06 1 23089 170.47 125.39 1 37055000 24258 28737 23938 27310 28600 23214 31461 28380 31273 28012 22953 27139 24185 28063 28788 23569 31882 29111 30865 27033 1 1 1 1 1 1 1 1 1 1 2082 341 1827 1928 2333 2333 IEVKEESPQSK 11 Phospho (STY) _IEVKEES(ph)PQSK_ IEVKEES(0.989)PQS(0.011)K IEVKEES(19.57)PQS(-19.57)K 0 0 1 1 P11171 P11171 P11171 EPB41 Protein 4.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.044860839844 3 451.881435 1352.62248 38083.1021411094 1.2239 0.00055304 507130 229.16 507130 229.16 681.044241749381 52.884 0.47755 52.884 52.549 53.027 0 36 16 3 0.849135801251013 0.00274631397853233 0.014825430121371 0.00028937 1 12310 100.98 81.71 2 84883000 34062 52817 30732 52456 85518 28812 87955 55829 60238 5728.9 32219 49892 31812 53503 83557 30285 88654 55126 60612 6686.6 1 1 1 1 1 1 1 1 1 1 2083 360 1828 1929 2334 2334 582 IEVLYEDEGFRSR 13 Phospho (STY) _IEVLYEDEGFRS(ph)R_ IEVLYEDEGFRS(1)R IEVLY(-56.56)EDEGFRS(56.56)R 0 0 1 1 Q99460 Q99460 Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 961.960327148438 2 846.885084 1691.75562 31511.8066758712 2.0056 0.0016985 135300 114.58 135300 114.58 961.465628332999 81.996 0.86274 81.996 81.652 82.514 0 101 29 5 0.977943716735838 0.00238371036808908 0.0866589712595522 0.036089 1 19152 56.563 28.164 2 91113000 11105 8315.4 11224 9684.7 8528.5 10806 8257.7 10669 11547 21774 10508 7863 11261 9878.4 8813.2 10821 8508.7 11363 11254 20750 1 1 1 1 1 1 1 1 1 1 2084 1766 1829 1930 2335 2335 3251 IFDIDEAEEGVK 12 Unmodified _IFDIDEAEEGVK_ 0 0 0 0 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 911.997802734375 2 682.83264 1363.65073 33690.0475028569 2.2115 0.0015101 335610 229.17 335610 229.17 911.995848725034 88.826 0.37346 88.826 88.623 88.997 1.4211E-14 28 12 3 0.919946227727245 0.000850409435931802 0.016572436040992 1.4748E-06 1 20731 176.95 127.53 1 5347200 8615.8 11508 7957.8 12154 9914.2 8433.1 9638.6 10363 12093 30705 8150.3 10875 8074.4 12380 9943.9 8701.1 9891.7 11245 11828 29152 1 1 1 1 1 1 1 1 1 1 2085 443 1830 1931 2336 2336 IFDPQNPDENE 11 Unmodified _IFDPQNPDENE_ 0 0 0 0 P46109 P46109 P46109 CRKL Crk-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.865783691406 2 659.283314 1316.55207 35644.5401564531 1.8802 0.0012396 173800 114.58 173800 114.58 773.864640291594 70.969 0.77482 70.969 70.567 71.342 0 83 26 4 0.990341177783045 0.00466145287068628 0.0405714101769321 8.4835E-11 1 16639 211.84 184.59 1 107010000 11589 27859 13621 28208 12700 12531 10805 18237 32895 18199 10974 26320 13584 28690 12937 13366 11694 18621 31521 17558 1 1 1 1 1 1 1 1 1 1 2086 608 1831 1932 2337 2337 IFLGADAEEEIGTPR 15 Phospho (STY) _IFLGADAEEEIGT(ph)PR_ IFLGADAEEEIGT(1)PR IFLGADAEEEIGT(114.3)PR 0 0 1 0 P28749 P28749 P28749 RBL1 Retinoblastoma-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.986511230469 3 566.597587 1696.77093 39523.3801089944 2.0196 0.0011443 134820 76.388 134820 76.389 642.985258578725 90.219 0.63311 90.219 89.87 90.503 0 38 21 2 0.551461800860149 0.00114398650836448 0.0529267638585569 0.0001721 1 21032 114.3 97.23 1 5456100 3140 3837.9 3081.3 3851.6 4085.2 3918.4 5124.7 4490.4 4145.9 10019 2971 3625.6 3120.3 3954.9 4100.2 3950.6 5139.8 4783.9 4132.3 9538.5 1 1 1 1 1 1 1 1 1 1 2087 496 1832 1933 2338 2338 4437 IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK 39 Oxidation (M),Phospho (STY) _IFPPETSASVAAT(ph)PPPSTASAPAAVNSSASADKPLSNM(ox)K_ IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNM(1)K IFPPETSASVAAT(1)PPPSTASAPAAVNSSASADKPLSNMK IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNM(175.57)K IFPPET(-57.84)S(-49.67)AS(-49.67)VAAT(49.67)PPPS(-50.13)T(-57.4)AS(-71.62)APAAVNS(-104.32)S(-104.32)AS(-103)ADKPLS(-114.91)NMK 0 1 1 1 P09874 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1139.09265136719 4 966.71568 3862.83361 29335.6025374532 1.5549 0.0015032 177790 171.87 177790 171.87 1139.34144520384 79.259 0.77192 79.259 79.017 79.789 0 67 26 4 0.194210800952774 0.000280269235213544 0.00444493792376948 2.4427E-10 1 18667 175.57 163.34 11 12599000 1946 1885.2 2384 1953.8 2266.9 1707 2852.5 3026.5 2537.3 24497 1843 1781.2 2375.1 1998 2315.4 1784.7 2866.8 3722.8 2516.9 23136 1 1 1 1 1 1 1 1 1 1 2088 343 1833 1934 2339 2339 40 562;563;4381;4382 IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK 39 Phospho (STY) _IFPPETSASVAAT(ph)PPPSTASAPAAVNSSASADKPLSNMK_ IFPPETSASVAAT(1)PPPSTASAPAAVNSSASADKPLSNMK IFPPET(-67.9)S(-58.17)AS(-49.32)VAAT(49.32)PPPS(-73.64)T(-96.4)AS(-132.21)APAAVNS(-220.93)S(-227.39)AS(-237.87)ADKPLS(-261.79)NMK 0 0 1 1 P09874 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 908.2763671875 5 770.375017 3846.8387 32826.103577202 1.5392 0.0011858 178480 137.5 178480 137.5 908.073109968251 85.857 2.3949 85.857 84.868 87.263 -1.4211E-14 447 82 6 0.944462702909705 0.0091532848859375 0.236653881534621 8.2991E-46 2 20125 328.64 314.73 11 61930000 16748 24248 18712 27692 25673 18216 27007 27653 30656 56921 15855 22926 18816 28071 25664 18907 27527 29088 30094 54238 2 2 2 2 2 2 2 2 2 2 2089 343 1833 1935 2340;2341 2341 562;563;4381;4382 IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK 39 Phospho (STY) _IFPPETSASVAAT(ph)PPPSTASAPAAVNSSASADKPLSNMK_ IFPPETSASVAAT(1)PPPSTASAPAAVNSSASADKPLSNMK IFPPET(-74.14)S(-65.41)AS(-57.48)VAAT(34.9)PPPS(-34.9)T(-60.48)AS(-77.48)APAAVNS(-133.25)S(-139.67)AS(-152.29)ADKPLS(-176.51)NMK 0 0 1 1 P09874 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1134.83728027344 4 962.716952 3846.8387 29330.460632294 0.70844 0.00068203 178530 171.87 178530 171.87 1135.09123746211 85.853 2.0172 85.853 85.01 87.028 1.4211E-14 266 69 5 0.683647906359785 0.00239134618098067 0.0376839035939172 4.6531E-26 3 19984 269.57 253.87 11 30307000 7252.4 10182 8707.3 9782.5 10221 9977.5 12600 14333 12568 70015 6868.1 9616.4 8707.1 10072 10317 10179 12711 16318 12402 66259 3 3 3 3 3 3 3 3 3 3 2090 343 1833 1935 2342;2343;2344 2342 562;563;4381;4382 IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK 39 Phospho (STY) _IFPPETSASVAAT(ph)PPPSTASAPAAVNSSASADKPLSNMK_ IFPPETS(0.002)ASVAAT(0.249)PPPS(0.249)T(0.249)AS(0.249)APAAVNSSASADKPLSNMK IFPPET(-29.11)S(-21.18)AS(-27.96)VAAT(0)PPPS(0)T(0)AS(0)APAAVNS(-46.53)S(-52.88)AS(-67.86)ADKPLS(-93.52)NMK 0 0 1 1 P09874 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.064880371094 6 642.14706 3846.8387 36475.5085149278 1.3413 0.00086133 178430 114.58 178440 114.58 757.063009598701 86.155 0.71931 86.155 85.786 86.505 0 57 24 4 0.535317606692741 0.0017182194950911 0.0472721541623603 3.184E-06 1 20071 133.47 116.67 11 10837000 4247.1 6105.9 3951.5 4844.1 5274.1 4995.2 7292.7 4366.1 5957.7 16434 4017.8 5760.8 4015.9 5053.2 5301.3 5023.3 7289.9 4899.1 5935.1 15575 1 1 1 1 1 1 1 1 1 1 2091 343 1833 1935 2345 2345 562;563;4381;4382 IFTSIGEDYDER 12 Unmodified _IFTSIGEDYDER_ 0 0 0 0 P35232 P35232 P35232 PHB Prohibitin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.414428710938 2 722.833171 1443.65179 34172.2600710139 2.0279 0.0014659 158520 114.58 158520 114.58 837.41279552039 81.463 1.043 81.463 80.84 81.883 0 90 35 4 0.669549626883718 0.0029825360135878 0.0760246357774378 2.5353E-10 1 19062 234.99 170.72 1 42065000 26115 33076 25192 30596 27503 27434 31179 31172 34301 18119 24708 31231 25455 31516 27829 27721 31646 31669 33712 17783 1 1 1 1 1 1 1 1 1 1 2092 542 1834 1936 2346 2346 IFVGGLSPDTPEEK 14 Unmodified _IFVGGLSPDTPEEK_ 0 0 0 0 Q14103 Q14103 Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.038208007813 3 496.924201 1487.75077 40270.5201013514 1.8167 0.00090276 307440 152.78 307450 152.78 650.035920442332 84.429 0.44711 84.429 84.216 84.663 1.4211E-14 29 15 3 0.7324461100431 0.00212686342367856 0.0251120406285265 0.0014164 1 19727 98.337 74.046 1 9498600 7053.8 8216.1 8626.2 8511.3 13302 8818 12822 9473.4 8324.7 7660.5 6680.6 7763.1 8652.1 8726 13211 8847.6 12951 9707.9 8404.7 7432.5 1 1 1 1 1 1 1 1 1 1 2093 985 1835 1937 2347 2347 IFVGGLSPDTPEEK 14 Phospho (STY) _IFVGGLS(ph)PDTPEEK_ IFVGGLS(0.995)PDT(0.005)PEEK IFVGGLS(23.41)PDT(-23.41)PEEK 0 0 1 0 Q14103 Q14103 Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.689758300781 3 523.579645 1567.71711 38317.8692119242 2.265 0.0011859 291790 152.77 291790 152.78 676.688156035106 89.984 0.50066 89.984 89.75 90.25 0 27 16 2 0.725940309927465 0.00147655182660683 0.0440466109685888 0.00016976 1 20982 104.94 83.382 2 5940800 3933.4 5678.1 4473.1 6040.8 5080.8 4863.7 5050.8 5337.3 5463.3 8437.6 3724 5365.9 4480.5 6161.5 5120.1 4949.5 5154.1 5589.6 5373.2 8068.6 1 1 1 1 1 1 1 1 1 1 2094 985 1835 1938 2348 2348 1664 IFYPEIEEVQALDDTER 17 Unmodified _IFYPEIEEVQALDDTER_ 0 0 0 0 P33316 P33316 P33316 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.392517089844 3 689.668749 2065.98442 35732.7375180092 2.0674 0.0014258 110760 76.387 110760 76.389 766.390608510483 100.35 0.27911 100.35 100.17 100.45 0 17 9 3 0.949586348498025 0.0226000143817245 0.389391270447931 9.2083E-16 1 23443 216.01 198.35 1 170880000 15835 18279 15946 17459 16247 13571 16558 16285 18461 53247 14984 17263 16054 17914 16476 13911 16892 17834 18135 50515 1 1 1 1 1 1 1 1 1 1 2095 532 1836 1939 2349 2349 IGEGTYGVVYK 11 Phospho (STY) _IGEGTY(ph)GVVYK_ IGEGT(0.301)Y(0.699)GVVYK IGEGT(-3.65)Y(3.65)GVVY(-43.64)K 0 0 1 0 P06493;P24941;Q00526 P06493;P24941 P06493 CDK1;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.45751953125 2 633.294311 1264.57407 33234.8652939932 1.6249 0.001029 361860 229.16 361860 229.16 862.457253193513 70.521 1.6174 70.521 69.988 71.605 0 190 55 6 0.945223742492499 0.00866693812205666 0.140542194395559 2.852E-10 1 16490 188.3 86.238 3 1767600000 75685 162160 83667 148240 33726 66466 43406 92456 162620 33691 71647 153110 83196 151740 37423 70661 46983 92748 155400 33864 1 1 1 1 1 1 1 1 1 1 2096 312;471 1837 1940 2350 2350 4868 IGELGAPEVWGLSPK 15 Phospho (STY) _IGELGAPEVWGLS(ph)PK_ IGELGAPEVWGLS(1)PK IGELGAPEVWGLS(148.15)PK 0 0 1 0 Q8N5F7 Q8N5F7 Q8N5F7 NKAP NF-kappa-B-activating protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.049560546875 3 544.939285 1631.79602 37436.0547929754 1.8245 0.00099422 280350 152.78 280350 152.78 698.048719341691 100.66 0.42081 100.66 100.56 100.98 0 46 14 6 0.988162536544099 0.024691913648519 0.404322009161272 6.0201E-07 1 23569 148.15 126.1 1 272720000 52859 69485 47142 72388 40517 46222 51467 53909 65735 29947 49997 65656 47738 73728 41676 47652 52254 54679 64255 29446 1 1 1 1 1 1 1 1 1 1 2097 1472 1838 1941 2351 2351 2720 IGEVSSPK 8 Phospho (STY) _IGEVSS(ph)PK_ IGEVS(0.184)S(0.816)PK IGEVS(-6.48)S(6.48)PK 0 0 1 0 P35251 P35251 P35251 RFC1 Replication factor C subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.875549316406 2 448.709883 895.405214 38478.1802393435 2.1011 0.00094278 510720 229.16 510720 229.16 677.874055864292 52.518 0.51797 52.518 52.294 52.812 7.1054E-15 42 17 3 0.908493259052897 0.00136598886892915 0.054844771196708 0.019656 1 12236 68.485 40.472 2 16489000 21969 22864 21008 21267 23322 23468 22722 22244 23060 5866 20785 21590 21237 21969 23523 23420 23167 22537 22739 6038.3 1 1 1 1 1 1 1 1 1 1 2098 544 1839 1942 2352 2352 879;880 IGLPHSIK 8 Phospho (STY) _IGLPHS(ph)IK_ IGLPHS(1)IK IGLPHS(115.18)IK 0 0 1 0 Q14498 Q14498 Q14498 RBM39 RNA-binding protein 39 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 468.278869628906 3 315.503682 943.489218 45413.1758530806 0.84566 0.00026681 484230 152.78 484230 152.78 468.278914231901 68.525 0.96626 68.525 68.095 69.061 0 96 32 4 0.987145683013476 0.00433798034347433 0.063676073371295 0.00060193 1 16045 115.18 78.842 1 46589000 24827 3871.6 22919 4371.5 5380.7 24248 4728.8 11488 4310.2 3603.3 23485 3660.2 22972 4777.4 6486.2 23264 4833.4 12126 4270.6 3658.8 1 1 1 1 1 1 1 1 1 1 2099 1009 1840 1943 2353 2353 1713 IGPLGLSPK 9 Phospho (STY) _IGPLGLS(ph)PK_ IGPLGLS(1)PK IGPLGLS(108.3)PK 0 0 1 0 P30050 P30050 P30050 RPL12 60S ribosomal protein L12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.423645019531 2 481.259543 960.504534 37395.1017423192 1.7511 0.00084271 476170 229.16 476180 229.16 710.422471348662 86.208 0.77864 86.208 85.87 86.648 0 78 26 4 0.823916337300378 0.00404117322672713 0.249028755488768 0.00055992 1 20081 108.3 59.319 1 56577000 16461 14958 15488 14940 16660 14108 16996 16897 16376 12213 15573 14130 15667 15328 16842 14236 17267 17208 16185 11891 1 1 1 1 1 1 1 1 1 1 2100 508 1841 1944 2354 2354 836 IGQQVDREPGDVATPPR 17 Phospho (STY) _IGQQVDREPGDVAT(ph)PPR_ IGQQVDREPGDVAT(1)PPR IGQQVDREPGDVAT(76.81)PPR 0 0 1 1 Q9Y5N6 Q9Y5N6 Q9Y5N6 ORC6 Origin recognition complex subunit 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 715.696411132813 3 638.973828 1913.89965 35965.6705620677 1.2728 0.0008133 119550 76.388 119550 76.388 715.695624474232 48.723 0.84432 48.723 48.152 48.997 0 89 28 4 0.980335535081784 0.00215741948203548 0.0383185010961159 0.023244 1 11243 76.807 55.208 1 51603000 16768 18143 18381 16728 18293 16062 17760 17368 19756 9881.1 15873 17131 18414 17252 18563 16164 18158 17668 19409 9706.2 1 1 1 1 1 1 1 1 1 1 2101 2297 1842 1945 2355 2355 4854 IGSGVER 7 Phospho (STY) _IGS(ph)GVER_ IGS(1)GVER IGS(98.73)GVER 0 0 1 0 P52272 P52272 P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.763610839844 2 399.181293 796.348033 43625.1138745247 0.6814 0.000272 287040 114.58 287040 114.58 513.762981669163 40.158 0.76843 40.158 39.861 40.629 0 72 25 4 0.781433896232614 0.00227065823682462 0.0209841306762757 0.0039068 1 9108 98.73 33.256 1 130990000 27523 36598 27116 35718 50485 26936 51612 36963 37065 2659.3 26042 34568 27616 36587 49855 27522 52084 36768 37189 3359.5 1 1 1 1 1 1 1 1 1 1 2102 688 1843 1946 2356 2356 1157 IGSLIDVNQSKDPEGLR 17 Phospho (STY) _IGS(ph)LIDVNQSKDPEGLR_ IGS(0.978)LIDVNQS(0.022)KDPEGLR IGS(16.4)LIDVNQS(-16.4)KDPEGLR 0 0 1 1 P61326;Q96A72 P61326 P61326 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.09814453125 3 640.985734 1919.93537 36325.6404595086 1.8667 0.0011965 238340 152.78 238350 152.78 794.095617936532 84.39 0.33759 84.39 84.187 84.524 0 25 11 3 0.837054224138516 0.00120969924700706 0.0155019187301072 0.041234 1 19732 45.88 26.556 2 6063300 7160.4 7967.9 7528.6 8650.6 7721.6 7192.6 7663.3 7809.9 8692 22244 6776.9 7530.9 7561.9 8817.1 7824.6 7324.2 7831.6 8480.2 8532.8 21126 1 1 1 1 1 1 1 1 1 1 2103 750 1844 1947 2357 2357 1236 IGSPLSPK 8 Phospho (STY) _IGS(ph)PLSPK_ IGS(0.989)PLS(0.011)PK IGS(19.48)PLS(-19.48)PK 0 0 1 0 Q659C4 Q659C4 Q659C4 LARP1B La-related protein 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.888000488281 2 439.722794 877.431034 40170.2736960763 2.2743 0.0010001 521150 229.16 521160 229.16 668.886140199759 64.761 0.63926 64.761 64.385 65.025 0 41 21 3 0.746408201089663 0.00107073582525373 0.02896770025013 0.018579 1 15212 70.441 31.432 2 13033000 13713 15254 15033 15261 18407 13731 18314 16786 16170 6508.7 12981 14410 15103 15644 18477 13882 18588 16916 16046 6517.3 1 1 1 1 1 1 1 1 1 1 2104 1222 1845 1948 2358 2358 2151;2152 IGSPLSPK 8 Phospho (STY) _IGSPLS(ph)PK_ IGS(0.047)PLS(0.953)PK IGS(-13.03)PLS(13.03)PK 0 0 1 0 Q659C4 Q659C4 Q659C4 LARP1B La-related protein 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.885803222656 2 439.722794 877.431034 39644.0374810468 2.4007 0.0010556 521150 229.16 521160 229.16 668.885661820997 67.713 0.44121 67.713 67.475 67.916 0 32 14 3 0.983018502783694 0.00107540645910301 0.0482567207810287 0.033318 1 15893 58.63 24.424 2 8791500 12847 13522 11242 11283 9969.3 10639 9964.9 11944 14109 8482.2 12151 12761 11397 11711 10196 10725 10257 12185 13746 8263.4 1 1 1 1 1 1 1 1 1 1 2105 1222 1845 1948 2359 2359 2151;2152 IGTPTRPCPLPPGK 14 Phospho (STY) _IGT(ph)PTRPCPLPPGK_ IGT(0.923)PT(0.077)RPCPLPPGK IGT(10.79)PT(-10.79)RPCPLPPGK 0 0 1 1 P42566 P42566 P42566 EPS15 Epidermal growth factor receptor substrate 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.375427246094 3 524.265226 1569.77385 39249.6602210284 1.6299 0.0008545 291410 152.78 291410 152.78 677.040305302189 58.124 1.6007 58.124 57.617 59.218 0 140 54 3 0.95598262724921 0.00142602637148807 0.012771179150818 0.025953 1 13593 73.498 47.78 2 16017000 11492 17385 11305 17944 16815 11767 17255 16731 18754 9883.2 10873 16426 11463 18291 16746 12151 17584 16888 18441 9693.5 1 1 1 1 1 1 1 1 1 1 2106 587 1846 1949 2360 2360 4463 IHEKDPNSATATAPPSPLK 19 Phospho (STY) _IHEKDPNSATATAPPS(ph)PLK_ IHEKDPNSATAT(0.002)APPS(0.998)PLK IHEKDPNS(-70.01)AT(-48.35)AT(-27.03)APPS(27.03)PLK 0 0 1 1 Q92766 Q92766 Q92766 RREB1 Ras-responsive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.379333496094 4 514.25431 2052.98814 38542.6649810837 1.778 0.00091432 334220 171.87 334220 171.87 686.377975651692 52.389 0.71169 52.389 52.101 52.812 -7.1054E-15 88 24 5 0.981638604074809 0.00168520641833625 0.0178200175711265 1.9149E-07 1 12158 148.28 124.48 4 21331000 10221 10317 10034 8698.6 7859.6 9701.4 9924.6 9812.2 9325 6576.2 9670.9 9736.8 10092 9046.3 8133 9693.2 9986.8 10036 9226.4 6419.4 1 1 1 1 1 1 1 1 1 1 2107 1618 1847 1950 2361 2361 2986 IHIDPEIQDGSPTTSR 16 Phospho (STY) _IHIDPEIQDGS(ph)PTTSR_ IHIDPEIQDGS(0.984)PT(0.011)T(0.004)S(0.001)R IHIDPEIQDGS(19.54)PT(-19.54)T(-24.17)S(-28.34)R 0 0 1 0 P50479 P50479 P50479 PDLIM4 PDZ and LIM domain protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.674682617188 3 615.9508 1844.83057 37033.6428069625 1.8892 0.0011636 124020 76.388 124020 76.389 692.33865151628 61.291 1.3183 61.291 60.863 62.181 0 120 44 5 0.892290337532864 0.00602804468116981 0.0887608137686424 3.9064E-07 1 14344 152.06 138.1 4 67394000 7724.6 12690 7439.1 13100 6691.6 7242.2 6685.8 9661.6 14446 5674.1 7308.4 11990 7498 13332 6842 7561.7 7018.3 9768.5 13924 5566.4 1 1 1 1 1 1 1 1 1 1 2108 663 1848 1951 2362 2362 1121 IHLGSSPK 8 Phospho (STY) _IHLGSS(ph)PK_ IHLGS(0.135)S(0.865)PK IHLGS(-8.07)S(8.07)PK 0 0 1 0 Q9H410 Q9H410 Q9H410 DSN1 Kinetochore-associated protein DSN1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 459.595306396484 3 306.819671 917.437182 46065.6366628711 0.43324 0.00013293 497930 152.78 497930 152.78 459.59507353317 52.509 0.68741 52.509 52.155 52.842 0 87 23 5 0.969196380183286 0.00302197784629877 0.0758018586456469 1.8522E-05 1 12182 141.88 112.14 2 79114000 19453 18439 18339 18161 12453 21777 15113 21527 18439 1176.4 18404 17417 18464 18722 13025 21666 15347 21638 18053 1605.9 1 1 1 1 1 1 1 1 1 1 2109 1934 1849 1952 2363 2363 3505 IHMSGPK 7 Phospho (STY) _IHMS(ph)GPK_ IHMS(1)GPK IHMS(64.71)GPK 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 436.570129394531 3 283.794468 848.361575 48847.9750207546 0.17033 4.8338E-05 538330 152.78 538330 152.78 436.569846052988 50.922 0.34669 50.922 50.761 51.108 0 22 11 2 0.86587382430364 0.000592087565061566 0.00412327627554645 0.014196 1 11852 64.711 38.773 1 7582700 15904 8290.9 17119 7581.9 3731.2 14925 3628.7 9228.1 8582.5 1333.8 15054 7828.1 17004 7946.1 4580.2 14564 3834.3 9517.4 8258.3 1469.5 1 1 1 1 1 1 1 1 1 1 2110 896 1850 1953 2364 2364 1468 IHNVGSPLK 9 Phospho (STY) _IHNVGS(ph)PLK_ IHNVGS(1)PLK IHNVGS(91.62)PLK 0 0 1 0 P52701 P52701 P52701 MSH6 DNA mismatch repair protein Msh6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 501.621765136719 3 348.846108 1043.5165 44425.1549714998 1.0076 0.0003515 437950 152.78 437950 152.78 501.621545625998 53.496 0.71117 53.496 53.147 53.859 0 67 23 4 0.91002216154903 0.00184846892347532 0.0239747654013572 0.0033077 1 12443 91.62 46.484 1 32534000 6965.3 13904 8545.1 14261 8839.1 8848.9 9023.6 11375 14986 1336.4 6596.9 13137 8517.5 14534 8960.8 9145.4 9339.6 11352 14534 1521.7 1 1 1 1 1 1 1 1 1 1 2111 695 1851 1954 2365 2365 1165 IHPMAYQLQLQAASNFKSPVK 21 Oxidation (M),Phospho (STY) _IHPM(ox)AYQLQLQAASNFKS(ph)PVK_ IHPM(1)AYQLQLQAASNFKSPVK IHPMAYQLQLQAAS(0.001)NFKS(0.999)PVK IHPM(251.1)AYQLQLQAASNFKSPVK IHPMAY(-174.07)QLQLQAAS(-28.64)NFKS(28.64)PVK 0 1 1 1 P67870 P67870 P67870 CSNK2B Casein kinase II subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.684631347656 4 617.560543 2466.21307 35854.4997678912 2.0304 0.0012539 278310 171.87 278310 171.87 789.683402342386 78.447 0.65758 78.447 78.119 78.777 -1.4211E-14 74 22 5 0.920145247228321 0.00317777630572615 0.102573095059069 5.6468E-23 2 18369 251.1 222.93 3 14854000 13173 15321 12527 14969 16349 13835 20570 16482 16705 20975 12463 14471 12706 15373 16421 13990 20630 17062 16647 20131 2 2 2 2 2 2 2 2 2 2 2112 786 1852 1955 2366;2367 2366 108 1259 IHPMAYQLQLQAASNFKSPVK 21 Phospho (STY) _IHPMAYQLQLQAASNFKS(ph)PVK_ IHPMAYQLQLQAAS(0.012)NFKS(0.988)PVK IHPMAY(-166.76)QLQLQAAS(-19.25)NFKS(19.25)PVK 0 0 1 1 P67870 P67870 P67870 CSNK2B Casein kinase II subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.685485839844 4 613.561814 2450.21815 36157.909418163 1.5275 0.0009372 280120 171.87 280120 171.87 785.684578493278 85.291 0.77581 85.291 84.982 85.758 0 103 26 5 0.816330773603055 0.00303266024574345 0.0404322894976003 4.6174E-23 1 19893 257.2 233.33 3 18833000 6957.4 8132.6 6461.2 6953.9 8015.9 7970.3 10394 8426 8324.3 14467 6581.6 7675.9 6558.1 7228.3 8074.4 7976.6 10410 8870.2 8301.4 13817 1 1 1 1 1 1 1 1 1 1 2113 786 1852 1956 2368 2368 1259 IHRASDPGLPAEEPK 15 Phospho (STY) _IHRAS(ph)DPGLPAEEPK_ IHRAS(1)DPGLPAEEPK IHRAS(159.26)DPGLPAEEPK 0 0 1 1 P27708 P27708 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.382019042969 3 566.273326 1695.79815 37746.9971766734 0.68682 0.00038893 269790 152.77 269790 152.78 719.047889963016 47.356 0.53353 47.356 47.122 47.656 0 34 22 2 0.698436537056749 0.00141042954446365 0.005676111273844 3.5807E-07 3 10949 159.26 123.07 1 66197000 80309 91194 83146 94589 110920 82920 112850 96269 105250 32011 76004 86167 83904 96726 110950 83863 114570 97012 104180 32370 3 3 3 3 3 3 3 3 3 3 2114 489 1853 1957 2369;2370;2371 2371 801 IHSPIIR 7 Phospho (STY) _IHS(ph)PIIR_ IHS(1)PIIR IHS(100.76)PIIR 0 0 1 0 O60885 O60885 O60885 BRD4 Bromodomain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.82666015625 2 458.244228 914.473902 41543.5931244393 1.5096 0.00069177 250040 114.58 250050 114.58 572.825559271148 48.894 1.0636 48.894 48.564 49.628 0 110 36 5 0.991150553087081 0.00197916543503068 0.0283082253899674 0.0027261 1 11308 100.76 52.473 1 137730000 26929 24411 26541 21642 26536 24995 26607 24332 25778 3239.6 25480 23045 26748 22444 26929 24902 27058 24530 25470 3613.6 1 1 1 1 1 1 1 1 1 1 2115 161 1854 1958 2372 2372 277 IHSPIPDMSK 10 Phospho (STY) _IHS(ph)PIPDMSK_ IHS(1)PIPDMSK IHS(57.96)PIPDMS(-57.96)K 0 0 1 0 Q6NZY4 Q6NZY4 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 554.960266113281 3 402.185913 1203.53591 41358.8720376157 1.336 0.00053734 379860 152.77 379860 152.78 554.960583580955 62.133 0.54068 62.133 61.892 62.433 0 69 18 5 0.798692599117245 0.00426702366122988 0.0674908721619487 0.0083041 1 14569 74.987 55.929 2 52055000 15219 17441 16802 19591 9783.9 16550 8737 15387 18571 2131.6 14407 16488 16740 19935 10338 16715 9213.1 15544 17907 2363.3 1 1 1 1 1 1 1 1 1 1 2116 1251 1855 1959 2373 2373 2216 IIEEDDAYDFSTDYV 15 Unmodified _IIEEDDAYDFSTDYV_ 0 0 0 0 Q9BVP2 Q9BVP2 Q9BVP2 GNL3 Guanine nucleotide-binding protein-like 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1012.46459960938 2 897.883255 1793.75196 31629.5207254646 1.2869 0.0011555 127610 114.58 127610 114.58 1012.46597602903 99.836 0.22479 99.836 99.75 99.975 0 17 7 5 0.704336991997086 0.000988982578160341 0.0686675705746059 1.788E-06 1 23249 160.59 135.37 1 28183000 12787 12071 9758.5 12385 12499 12158 11417 13339 12705 96356 12088 11405 10032 12694 12508 12393 11709 16237 12482 91039 1 1 1 1 1 1 1 1 1 1 2117 1845 1856 1960 2374 2374 IIITEPSD 8 Phospho (STY) _IIITEPS(ph)D_ IIITEPS(1)D IIIT(-48.18)EPS(48.18)D 0 0 1 0 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.804565429688 2 484.222823 966.431094 40907.5883398106 1.306 0.0006324 236630 114.58 236630 114.58 598.80419905983 80.257 1.1658 80.257 79.674 80.84 0 82 39 3 0.881507189884378 0.00123041713590152 0.0150162725144611 0.018317 1 18791 70.919 66.563 2 10333000 4602.2 6174.8 4741.8 5032.2 6843.9 4814.3 6856.4 6019.7 5817.7 8716.8 4355.4 5826.6 4792.5 5233.2 6820.3 4866.8 6950.2 6254.1 5784.4 8347.2 1 1 1 1 1 1 1 1 1 1 2118 2028 1857 1961 2375 2375 3685 IILDLISESPIK 12 Phospho (STY) _IILDLISES(ph)PIK_ IILDLISES(1)PIK IILDLIS(-48.76)ES(48.76)PIK 0 0 1 0 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.038024902344 3 474.261476 1419.7626 40658.9724178958 1.4682 0.00069629 322130 152.78 322130 152.78 627.371036058684 102.73 0.37354 102.73 102.6 102.97 0 26 12 4 0.926280353171279 0.0036262245543369 0.0469821848300724 1.6422E-07 1 24214 160.78 134.74 2 25939000 2822.9 6329 3413 5234.4 3127.3 2587.9 4008.1 4367.3 5723 16729 2673.4 5972.6 3400.9 5398.8 3204.5 2765.9 4084.6 4815.8 5574.1 15853 1 1 1 1 1 1 1 1 1 1 2119 752 1858 1962 2376 2376 1240 IILDLISESPIKGR 14 Phospho (STY) _IILDLISES(ph)PIKGR_ IILDLISES(1)PIKGR IILDLIS(-58.84)ES(58.84)PIKGR 0 0 1 1 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.078552246094 3 545.302334 1632.88517 37995.7934345446 1.4574 0.00079475 280170 152.78 280170 152.78 698.412040595693 101.02 0.31815 101.02 100.93 101.24 0 32 10 5 0.948565477465019 0.015547473044995 0.356821229299574 9.1209E-24 1 23693 285.06 223.65 2 85570000 34019 64854 34984 56191 34424 33610 38489 46063 64526 15684 32194 61216 35172 57861 35049 34883 39697 46195 62564 15835 1 1 1 1 1 1 1 1 1 1 2120 752 1859 1963 2377 2377 1240 IILNSHSPAGSAAISQQDFHPK 22 Phospho (STY) _IILNSHS(ph)PAGSAAISQQDFHPK_ IILNSHS(1)PAGSAAISQQDFHPK IILNS(-51.75)HS(51.75)PAGS(-59.62)AAIS(-104.45)QQDFHPK 0 0 1 0 Q9UPU5 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 715.128845214844 4 600.294232 2397.14782 37422.7789529382 1.7501 0.0010506 190870 114.58 190880 114.58 714.873880637914 70.224 0.72242 70.224 69.904 70.627 0 71 24 5 0.916644244924813 0.00415534186251508 0.0450051579792552 9.2952E-24 1 16451 265.65 229.4 4 23227000 7583.1 6905 7197.6 7041.1 6046.4 7268.1 9095.3 9316.1 7116.2 9468.2 7174.1 6523.7 7261.4 7224.9 6245.1 7318.6 9057.6 9550.7 7105.5 9131.1 1 1 1 1 1 1 1 1 1 1 2121 2220 1860 1964 2378 2378 4017 IIPELVGSPTQSTSSR 16 Phospho (STY) _IIPELVGS(ph)PTQSTSSR_ IIPELVGS(0.995)PT(0.005)QSTSSR IIPELVGS(22.8)PT(-22.8)QS(-54.49)T(-68.82)S(-72.7)S(-76.54)R 0 0 1 0 Q9NSI6 Q9NSI6 Q9NSI6 BRWD1 Bromodomain and WD repeat-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.013854980469 3 584.624025 1750.85024 38421.9931129344 1.9369 0.0011324 130660 76.387 130660 76.389 661.011558844151 88.603 0.71495 88.603 88.282 88.997 -1.4211E-14 62 24 4 0.987780892939551 0.00233701847473419 0.0358826725624911 4.1296E-07 1 20647 150.69 136.78 6 10548000 2871.8 3440.5 2959.2 3846.9 4464.8 3526.4 3420 3748.8 4436.4 7604.8 2717.8 3252.5 2991.2 3919.9 4428.1 3566.1 3559.3 3980.8 4334.2 7247.6 1 1 1 1 1 1 1 1 1 1 2122 2027 1861 1965 2379 2379 3681 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK 36 Phospho (STY) _IIPTLEEGLQLPS(ph)PTATSQLPLESDAVECLNYQHYK_ IIPTLEEGLQLPS(0.997)PT(0.003)ATSQLPLESDAVECLNYQHYK IIPT(-124.24)LEEGLQLPS(25.81)PT(-25.81)AT(-35)S(-44.1)QLPLES(-99.09)DAVECLNY(-246.67)QHY(-264.26)K 0 0 1 0 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1149.34240722656 4 1034.50499 4133.99084 28934.2622583435 0.89148 0.00092224 110760 114.58 110760 114.58 1149.58851479121 101.06 0.68999 101.06 100.95 101.64 0 99 23 8 0.985493066693775 0.0784687943832078 1 1.3716E-35 1 23700 320.16 298.51 8 829670000 18295 37331 23606 31904 11318 25712 12431 23855 37073 31465 17331 35234 23316 32989 12250 26085 13275 24948 35535 30180 1 1 1 1 1 1 1 1 1 1 2123 752 1862 1966 2380 2380 1241;1242;4487;4488 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK 36 Phospho (STY) _IIPTLEEGLQLPS(ph)PTATSQLPLESDAVECLNYQHYK_ IIPTLEEGLQLPS(0.25)PT(0.25)AT(0.25)S(0.25)QLPLESDAVECLNYQHYK IIPT(-89.03)LEEGLQLPS(0)PT(0)AT(0)S(0)QLPLES(-62.28)DAVECLNY(-145.09)QHY(-154.35)K 0 0 1 0 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.728637695313 6 690.00575 4133.99084 35526.7942495549 1.3422 0.00092615 110710 76.388 110710 76.389 766.727796383412 101.06 0.20449 101.06 100.98 101.19 0 21 6 6 0.964143152694817 0.00326657422509838 0.0687203921722374 1.404E-12 1 23716 194.25 183.14 8 46024000 6992.2 13192 9191.7 9177.8 6481.9 8731 6565.4 7793.1 13101 25436 6624.7 12439 9096 9661.2 6745.2 8807.6 6857.9 8619.8 12649 24132 1 1 1 1 1 1 1 1 1 1 2124 752 1862 1966 2381 2381 1241;1242;4487;4488 IISIFSGTEKGSK 13 Phospho (STY) _IISIFSGTEKGS(ph)K_ IISIFSGTEKGS(1)K IIS(-50.88)IFS(-45.08)GT(-36.63)EKGS(36.63)K 0 0 1 1 Q13177 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.41064453125 3 482.912847 1445.71671 37756.3685983905 2.5969 0.0012541 474540 229.16 474550 229.16 712.075643754015 94.083 0.94999 94.083 93.732 94.682 -1.4211E-14 76 32 3 0.937400903945514 0.00282721261236967 0.0651318216473 0.00016323 1 21884 102.58 42.679 4 10876000 7184.4 8021.9 8094.7 7626.2 7669 8428.6 8563.7 9248.5 8696.1 13095 6801.7 7575.8 8095 7867.3 7820.4 8447.6 8677.7 9639.7 8574.8 12544 1 1 1 1 1 1 1 1 1 1 2125 933 1863 1967 2382 2382 1533 IISSSPNKK 9 Phospho (STY) _IISSS(ph)PNKK_ IIS(0.292)S(0.292)S(0.416)PNKK IIS(-1.54)S(-1.54)S(1.54)PNKK 0 0 1 1 Q8TCN5 Q8TCN5 Q8TCN5 ZNF507 Zinc finger protein 507 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.013549804688 3 351.849518 1052.52673 41837.5812720138 2.0004 0.00070383 651310 229.16 651310 229.16 581.012700664811 52.39 0.56311 52.39 52.072 52.635 0 46 19 3 0.608567855695714 0.0029159617299552 0.0529048148828961 0.013455 1 12202 63.944 36.806 3 23487000 29748 41279 34693 42338 22772 32786 20243 36821 46988 5754.9 28168 39001 34499 43253 23803 33351 21460 36951 45228 6271.1 1 1 1 1 1 1 1 1 1 1 2126 1544 1864 1968 2383 2383 2835 IISVTPVK 8 Phospho (STY) _IISVT(ph)PVK_ IIS(0.012)VT(0.988)PVK IIS(-19.13)VT(19.13)PVK 0 0 1 0 Q29RF7 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.92626953125 2 468.761919 935.509285 38039.5600564066 2.3499 0.0011015 488870 229.16 488870 229.16 697.925012369686 77.883 0.66037 77.883 77.545 78.205 -1.4211E-14 70 22 4 0.998679450538292 0.00507287834945914 0.0745757503272711 5.1481E-06 1 18231 171.5 102.17 2 75975000 35135 36726 34600 35588 22412 32661 21672 31971 36645 12194 33245 34687 34720 36563 23467 32883 22506 32463 35522 12222 1 1 1 1 1 1 1 1 1 1 2127 1119 1865 1969 2384 2384 4587 IISVTPVKNIDPVK 14 Phospho (STY) _IISVT(ph)PVKNIDPVK_ IIS(0.005)VT(0.995)PVKNIDPVK IIS(-23.29)VT(23.29)PVKNIDPVK 0 0 1 1 Q29RF7 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.131896972656 3 534.967063 1601.87936 NaN NaN NaN NaN NaN NaN NaN NaN 88.195 1 88.195 87.695 88.695 0 NaN NaN NaN 7.0436E-05 1 20576 126.26 101.34 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2128 1119 1866 1970 2385 2385 4587 IKNENTEGSPQEDGVELEGLK 21 Phospho (STY) _IKNENTEGS(ph)PQEDGVELEGLK_ IKNENTEGS(1)PQEDGVELEGLK IKNENT(-47.95)EGS(47.95)PQEDGVELEGLK 0 0 1 1 P11388 P11388 P11388 TOP2A DNA topoisomerase 2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1018.52734375 3 789.363486 2365.06863 31423.9765406403 1.8135 0.0014315 290310 229.16 290320 229.16 1019.1944726431 73.713 0.59711 73.713 73.473 74.07 0 56 20 4 0.96483837638637 0.00220954097515176 0.0480756853809888 1.6167E-16 1 17301 226.9 172.68 2 26140000 5883.6 12972 6155.3 13283 4742.5 6237.1 5115.1 9113.6 13761 39027 5568.4 12256 6165.8 13507 4909.5 6675.8 5425.6 10206 13211 36960 1 1 1 1 1 1 1 1 1 1 2129 363 1867 1971 2386 2386 592 IKPNLSSSPR 10 Phospho (STY) _IKPNLSSS(ph)PR_ IKPNLS(0.032)S(0.105)S(0.863)PR IKPNLS(-14.29)S(-9.13)S(9.13)PR 0 0 1 1 Q8N655 Q8N655 Q8N655 C10orf12 Uncharacterized protein C10orf12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 546.311767578125 3 393.535822 1177.58564 41996.4757488524 0.87989 0.00034627 388210 152.78 388210 152.78 546.311133797885 50.533 0.92394 50.533 50.012 50.936 7.1054E-15 84 31 4 0.981532913006656 0.00568262384465288 0.122132952275938 0.0059332 1 11712 82.55 44.464 3 94430000 20716 17432 21370 17469 16581 18938 18818 17908 18220 2174.4 19605 16468 21426 17958 17141 18908 19031 18068 18003 2461.9 1 1 1 1 1 1 1 1 1 1 2130 1477 1868 1972 2387 2387 2726 IKPSSSANAIYSLAAR 16 Phospho (STY) _IKPSSS(ph)ANAIYSLAAR_ IKPS(0.002)S(0.198)S(0.801)ANAIYSLAAR IKPS(-27.03)S(-6.07)S(6.07)ANAIY(-84.07)S(-69.86)LAAR 0 0 1 1 P22681 P22681 P22681 CBL E3 ubiquitin-protein ligase CBL MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 730.071105957031 3 576.96086 1727.86075 36500.4696404934 2.423 0.001398 264790 152.77 264790 152.78 729.735791560735 75.217 0.76905 75.217 74.859 75.628 0 104 26 6 0.935767298253209 0.0243534224239596 0.230342600514821 8.0367E-16 1 17630 219.3 189.76 5 169580000 36519 56000 48001 51114 23856 46054 25203 50157 68742 8620 34600 52873 47381 52700 25695 46456 26782 50412 65982 9277.6 1 1 1 1 1 1 1 1 1 1 2131 461 1869 1973 2388 2388 755 IKQEVESPTDK 11 Phospho (STY) _IKQEVES(ph)PTDK_ IKQEVES(0.968)PT(0.032)DK IKQEVES(14.8)PT(-14.8)DK 0 0 1 1 P10242 P10242 P10242 MYB Transcriptional activator Myb MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.046020507813 3 451.881435 1352.62248 37501.8398033698 2.407 0.0010877 507130 229.16 507130 229.16 681.044938062061 53.87 0.85645 53.87 53.503 54.36 -7.1054E-15 81 28 4 0.932520117891689 0.00254900855843758 0.0233633095601078 0.00014072 2 12544 108.56 67.466 2 24532000 77382 43732 76724 43645 37030 81697 37443 56625 47487 16901 73221 41312 76809 45431 39938 79908 38369 58280 46430 17225 2 2 2 2 2 2 2 2 2 2 2132 351 1870 1974 2389;2390 2389 568 IKTEPSSPLSDPSDIIR 17 Phospho (STY) _IKTEPSS(ph)PLSDPSDIIR_ IKT(0.001)EPS(0.277)S(0.722)PLS(0.001)DPSDIIR IKT(-31.19)EPS(-4.16)S(4.16)PLS(-29.54)DPS(-44.62)DIIR 0 0 1 1 Q9ULJ3 Q9ULJ3 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.432067871094 3 645.653872 1933.93979 34492.1901153109 2.4406 0.0015758 236620 152.78 236630 152.78 798.764416176385 74.227 0.75784 74.227 73.812 74.57 0 60 25 3 0.919822725996539 0.00261153328603929 0.0779320026262444 0.0076871 1 17467 80.314 64.014 5 24045000 9534 13428 11240 14244 9664.9 10684 11342 11966 14838 18462 9028 12690 11204 14518 9928 10919 11560 12510 14492 17661 1 1 1 1 1 1 1 1 1 1 2133 2185 1871 1975 2391 2391 3952 ILCKSPQSDPADTPTNTK 18 Phospho (STY) _ILCKS(ph)PQSDPADTPTNTK_ ILCKS(0.706)PQS(0.294)DPADTPTNTK ILCKS(3.81)PQS(-3.81)DPADT(-87.69)PT(-101.38)NT(-121.77)K 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 914.145812988281 3 684.981772 2051.92349 32216.6105912785 1.6501 0.0011303 334550 229.16 334560 229.16 914.480016404916 62.21 0.42703 62.21 61.949 62.376 0 44 14 4 0.887056523435543 0.00168429109865288 0.0522516186709125 2.1924E-11 1 14603 204.04 169.88 5 14345000 15218 15478 15433 16445 6831.7 15841 7104.8 11585 15804 11770 14401 14627 15423 16817 7452.7 15874 7457.2 12140 15225 11351 1 1 1 1 1 1 1 1 1 1 2134 603 1872 1976 2392 2392 985 ILCLFRPQSGR 11 Phospho (STY) _ILCLFRPQS(ph)GR_ ILCLFRPQS(1)GR ILCLFRPQS(50.9)GR 0 0 1 1 O43598 O43598 O43598 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.627624511719 3 476.239011 1425.6952 42564.6494966075 1.4468 0.00068903 160400 76.388 160400 76.388 552.960730288628 93.345 1.0822 93.345 92.972 94.054 0 72 36 3 0.980690827387966 0.000962446701961008 0.0462826814573445 0.029394 1 21722 50.897 37.889 1 8021700 1966.8 4222.4 1623 4317.4 2535.6 1831.5 2733.8 3648.6 4515.2 4591.6 1859.8 3989.3 1665.6 4387.2 2523.7 1978.2 2822 3727.8 4379.6 4408 1 1 1 1 1 1 1 1 1 1 2135 120 1873 1977 2393 2393 208 ILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK 32 Phospho (STY) _ILDPNTGEPAPVLSS(ph)PPPADVSTFLAFPSPEK_ ILDPNTGEPAPVLS(0.176)S(0.818)PPPADVS(0.003)T(0.003)FLAFPSPEK ILDPNT(-42.74)GEPAPVLS(-6.69)S(6.69)PPPADVS(-24.29)T(-24.29)FLAFPS(-51.5)PEK 0 0 1 0 P46060 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 958.251281738281 4 843.417815 3369.64216 32324.3443949587 1.2082 0.001019 135850 114.58 135850 114.58 958.500309917532 101.75 0.4851 101.75 101.64 102.13 0 40 16 6 0.928499711490407 0.00772272167236341 0.152392468695846 4.0822E-05 1 23954 113.37 96.402 6 92477000 16505 19892 11637 16544 6417 11040 6691.6 16303 15599 50556 15599 18772 11934 17103 6832.5 11473 7042.2 17673 15014 47982 1 1 1 1 1 1 1 1 1 1 2136 605 1874 1978 2394 2394 997 ILDQGEDFPASEMTR 15 Unmodified _ILDQGEDFPASEMTR_ 0 0 0 0 P30040 P30040 P30040 ERP29 Endoplasmic reticulum resident protein 29 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 969.483215332031 2 854.895977 1707.7774 NaN NaN NaN NaN NaN NaN NaN NaN 78.73 1 78.73 78.23 79.23 0 NaN NaN NaN 0.005302 1 18448 109.44 69.441 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2137 505 1875 1979 2395 2395 ILDSVGIEADDDR 13 Unmodified _ILDSVGIEADDDR_ 0 0 0 0 P05387 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.926635742188 2 709.343903 1416.67325 34164.240852999 2.3037 0.0016341 161530 114.58 161530 114.58 823.925670434968 77.381 0.80993 77.381 77.085 77.895 1.4211E-14 80 27 4 0.601240811067173 0.00748013735859908 0.325196459953316 8.3585E-23 1 18128 282.61 211 1 63094000 34863 35022 32826 34078 29445 32219 31593 35904 38982 142760 32982 33079 33134 35018 30118 32693 32259 40173 38150 135260 1 1 1 1 1 1 1 1 1 1 2138 302 1876 1980 2396 2396 ILDSVGIEADDDRLNK 16 Unmodified _ILDSVGIEADDDRLNK_ 0 0 0 1 P05387 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.750061035156 3 591.639012 1771.89521 36508.7842632342 1.718 0.0010164 258220 152.78 258230 152.78 744.748930866466 79.72 0.83018 79.72 79.39 80.22 0 110 28 6 0.949322595583087 0.00942252632805554 0.115355450436069 2.0788E-10 2 18642 193.69 158.05 1 104710000 28418 28638 30268 29189 28482 29472 27528 28942 30287 35791 26897 27056 30348 29941 28998 29589 28143 30130 29767 34371 2 2 2 2 2 2 2 2 2 2 2139 302 1877 1981 2397;2398 2397 ILEPDDFLDDLDDEDYEEDTPK 22 Phospho (STY) _ILEPDDFLDDLDDEDYEEDT(ph)PK_ ILEPDDFLDDLDDEDY(0.005)EEDT(0.995)PK ILEPDDFLDDLDDEDY(-22.62)EEDT(22.62)PK 0 0 1 0 Q92785 Q92785 Q92785 DPF2 Zinc finger protein ubi-d4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1060.80969238281 3 907.70027 2720.07898 31792.1270341554 1.4397 0.0013068 168310 152.78 168310 152.78 1060.81035209488 101.77 0.19975 101.77 101.64 101.84 0 14 6 3 0.608524047957087 0.00150494574659307 0.0416633130579446 1.8822E-05 1 23971 132.28 117.58 2 30003000 6060.9 6840.9 7058.8 7057.6 7413.1 6912.3 5396.3 10236 8978.2 110110 5738.9 6463.6 7050.9 7231 7476.8 7184.1 5687.9 13457 8706.8 103920 1 1 1 1 1 1 1 1 1 1 2140 1619 1878 1982 2399 2399 4717 ILEQQNSSRTLEK 13 Phospho (STY) _ILEQQNSSRT(ph)LEK_ ILEQQNS(0.003)S(0.009)RT(0.988)LEK ILEQQNS(-25.04)S(-20.23)RT(20.23)LEK 0 0 1 1 Q16181 Q16181 Q16181 SEPT7 Septin-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.712707519531 3 542.601331 1624.78217 37432.6804034618 1.908 0.0010353 281560 152.78 281560 152.78 695.377333459661 57.252 0.52105 57.252 56.985 57.506 -7.1054E-15 47 17 3 0.910917666116631 0.00533037302379976 0.0646879485334153 0.00039688 1 13399 104.88 81.401 3 43018000 31967 22814 32755 24670 33110 33400 36790 31958 25845 8729.6 30252 21562 32948 25357 33621 33088 36972 32376 25965 8959.6 1 1 1 1 1 1 1 1 1 1 2141 1100 1879 1983 2400 2400 4582 ILGADTSVDLEETGR 15 Unmodified _ILGADTSVDLEETGR_ 0 0 0 0 P25705 P25705 P25705 ATP5A1 ATP synthase subunit alpha, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.979614257813 2 788.396667 1574.77878 33608.8457736039 2.0275 0.0015985 145340 114.58 145340 114.58 902.9783811218 74.677 0.58047 74.677 74.449 75.03 0 62 19 4 0.947565233804589 0.00307630831230861 0.133660984621281 8.1103E-32 1 17521 323.08 274.28 1 40434000 20671 14289 21049 15796 18028 19793 18798 18255 15681 22217 19561 13507 21138 16191 18481 19684 19013 19040 15604 21342 1 1 1 1 1 1 1 1 1 1 2142 476 1880 1984 2401 2401 ILGQSSPEKK 10 Phospho (STY) _ILGQSS(ph)PEKK_ ILGQS(0.32)S(0.68)PEKK ILGQS(-3.27)S(3.27)PEKK 0 0 1 1 P29374 P29374 P29374 ARID4A AT-rich interactive domain-containing protein 4A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.696228027344 3 389.532078 1165.5744 40107.7522082135 1.9255 0.00075005 588300 229.16 588310 229.16 618.695131516992 57.493 0.62988 57.493 57.19 57.82 7.1054E-15 69 21 4 0.932957951675644 0.00399269371152591 0.0798337387632129 0.0052188 1 13412 87.447 60.736 2 47669000 20795 15908 20663 16573 16481 19686 17230 17833 18023 3439.1 19677 15031 20764 17026 16984 19576 17524 18063 17750 3651.1 1 1 1 1 1 1 1 1 1 1 2143 499 1881 1985 2402 2402 826 ILGTQEITAR 10 2 Phospho (STY) _ILGT(ph)QEIT(ph)AR_ ILGT(1)QEIT(1)AR ILGT(47.04)QEIT(47.04)AR 0 0 2 0 Q8N3D4 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 497.581878662109 3 421.191154 1260.55163 44723.1381124979 0.8002 0.00033704 181360 76.389 181370 76.39 497.581808982685 88.926 0.75069 88.926 88.452 89.202 0 110 25 6 0.951325863927011 0.00291877845519534 0.031276421629533 0.038 1 20724 47.037 24.152 1 21211000 3163.3 3717.6 3635.8 3485.7 1683.2 4224.3 2285.2 3173.8 3333.3 1544.4 2995.1 3510.5 3611.1 3605 1832.9 4191 2325.9 3270.8 3244.5 1527.7 1 1 1 1 1 1 1 1 1 1 2144 1461 1882 1986 2403 2403 4675;4676 ILIPSDIESSK 11 Phospho (STY) _ILIPS(ph)DIESSK_ ILIPS(1)DIESSK ILIPS(53.04)DIES(-53.04)S(-57.61)K 0 0 1 0 P30414 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 870.487548828125 2 641.320526 1280.6265 35473.2142035987 2.0572 0.0013193 357330 229.16 357330 229.16 870.984232386089 90.637 0.57629 90.637 90.42 90.996 0 32 19 2 0.601126440358101 0.000702944437732094 0.0313904185815032 0.0001358 1 21119 121.56 90.08 3 7506300 6346.2 9256.9 7020.2 8820.2 6655.6 6190.6 6228.3 8634.7 10313 27827 6007.7 8742.2 7024.9 9040.7 6773.5 6405.6 6472.2 9405 10002 26402 1 1 1 1 1 1 1 1 1 1 2145 516 1883 1987 2404 2404 842 ILKSPEIQR 9 Phospho (STY) _ILKS(ph)PEIQR_ ILKS(1)PEIQR ILKS(126.83)PEIQR 0 0 1 1 P36578 P36578 P36578 RPL4 60S ribosomal protein L4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 541.319946289063 3 388.544318 1162.61112 42515.3531799497 1.3371 0.0005195 393200 152.78 393200 152.78 541.319796799521 60.054 1.2364 60.054 59.51 60.747 0 129 42 5 0.971236520977083 0.00279713652545126 0.0186958021884172 0.00013247 1 14026 126.83 84.023 1 158810000 16496 18862 17515 19343 12303 16181 10844 16529 20309 2072.7 15613 17821 17512 19781 12782 16369 11368 16629 19637 2334.3 1 1 1 1 1 1 1 1 1 1 2146 556 1884 1988 2405 2405 902 ILLLFGETELSPTATPR 17 Phospho (STY) _ILLLFGETELS(ph)PTATPR_ ILLLFGETELS(0.995)PT(0.004)ATPR ILLLFGET(-73.58)ELS(23.48)PT(-23.48)AT(-36.26)PR 0 0 1 0 Q8NCF5 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.060607910156 3 646.670975 1936.9911 NaN NaN NaN NaN NaN NaN NaN NaN 102.98 1 102.98 102.48 103.48 0 NaN NaN NaN 2.8879E-09 1 24273 168.99 146.98 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2147 1497 1885 1989 2406 2406 2749 ILLSNILDVMDEES 14 Unmodified _ILLSNILDVMDEES_ 0 0 0 0 Q06187 Q06187 Q06187 BTK Tyrosine-protein kinase BTK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 910.483032226563 2 795.900196 1589.78584 32796.1085570135 1.8709 0.0014891 143960 114.58 143970 114.58 910.481445217949 104.13 0.1447 104.13 104.03 104.17 0 13 4 4 0.974339381300449 0.00438076513540067 0.173902026588487 1.7682E-10 1 24525 207.34 173.07 1 11941000 5334.7 4765.9 4930.7 3563.2 4840.9 5643.9 5183.6 5621.8 5714.5 95405 5046.5 4495.3 4987.7 3765.4 4923.2 5743.7 5274.5 8514.6 5616 89965 1 1 1 1 1 1 1 1 1 1 2148 873 1886 1990 2407 2407 ILRLSTFEK 9 Phospho (STY) _ILRLS(ph)TFEK_ ILRLS(0.509)T(0.491)FEK ILRLS(0.16)T(-0.16)FEK 0 0 1 1 O94804 O94804 O94804 STK10 Serine/threonine-protein kinase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.988586425781 3 396.212568 1185.61587 43707.0660684747 1.6906 0.00066983 385590 152.78 385590 152.78 548.987679826015 93.384 0.61172 93.384 93.09 93.702 0 40 20 3 0.950344581994785 0.000715949705406865 0.0152492183959668 0.013362 1 21750 62.454 29.508 2 6927800 5565.3 529.68 6635 1183.4 3602.2 6935.1 3975.1 3608.8 1667.6 3288.2 5270.2 504.09 6583.2 1267.6 3837.6 6659.2 3965.2 3847.8 1743.2 3179.7 1 1 1 1 1 1 1 1 1 1 2149 218 1887 1991 2408 2408 378 ILSDVTHSAVFGVPASK 17 Phospho (STY) _ILS(ph)DVTHSAVFGVPASK_ ILS(0.998)DVT(0.002)HSAVFGVPASK ILS(26.15)DVT(-26.15)HS(-43.77)AVFGVPAS(-147.58)K 0 0 1 0 Q2M2I8 Q2M2I8 Q2M2I8 AAK1 AP2-associated protein kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 756.081115722656 3 603.304515 1806.89172 36250.7559689869 1.7888 0.0010792 253230 152.78 253230 152.78 756.414067657681 99.822 0.3938 99.822 99.72 100.11 0 37 13 5 0.561520965487129 0.0144633161827878 0.501775116870569 9.1239E-08 1 23235 167.97 132.64 4 143650000 64022 69049 72248 72531 22080 67709 29453 62107 83198 165100 60612 65248 71676 74182 25524 68324 31098 67490 79812 156900 1 1 1 1 1 1 1 1 1 1 2150 1122 1888 1992 2409 2409 1952 ILSPSMASK 9 Phospho (STY) _ILS(ph)PSMASK_ ILS(0.997)PS(0.003)MASK ILS(25.1)PS(-25.1)MAS(-78.56)K 0 0 1 0 Q9Y6A5 Q9Y6A5 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.40380859375 2 507.240493 1012.46643 37109.1020019717 2.6375 0.0013378 451780 229.16 451790 229.16 736.403021058044 74.477 0.57983 74.477 74.218 74.797 0 60 19 4 0.840816120850341 0.00296929976081741 0.169934486748305 9.6419E-07 1 17466 172 106.53 3 36490000 16423 36124 16859 34980 14100 16122 13561 23973 39006 9343.6 15542 34119 16916 35683 14488 17118 14526 24023 37408 9353 1 1 1 1 1 1 1 1 1 1 2151 2310 1889 1993 2410 2410 4260 ILSQSTDSLNMR 12 Oxidation (M),Phospho (STY) _ILSQS(ph)TDSLNM(ox)R_ ILSQSTDSLNM(1)R ILS(0.025)QS(0.743)T(0.195)DS(0.038)LNMR ILSQSTDSLNM(53)R ILS(-14.81)QS(5.81)T(-5.81)DS(-12.93)LNMR 0 1 1 0 Q92974 Q92974 Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.909362792969 2 730.826181 1459.63781 30312.2482000476 1.3666 0.00099873 156780 114.58 156790 114.58 845.407949497949 61.636 0.3199 61.636 61.36 61.68 0 24 10 4 0.974470541078572 0.000725495657763299 0.0160650390817805 0.040472 1 14453 53.001 34.256 4 19064000 16069 17230 15446 18592 21803 18504 23151 18855 19224 34349 15203 16284 15670 19005 21766 18621 23394 19935 19135 32780 1 1 1 1 1 1 1 1 1 1 2152 1636 1890 1994 2411 2411 192 3024;3025 ILSQSTDSLNMR 12 Phospho (STY) _ILSQS(ph)TDSLNMR_ ILSQS(0.857)T(0.142)DSLNMR ILS(-36.09)QS(7.8)T(-7.8)DS(-39.24)LNMR 0 0 1 0 Q92974 Q92974 Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.413391113281 2 722.828724 1443.64289 34024.4841052575 1.6932 0.0012239 158520 114.58 158520 114.58 837.410300733017 73.287 0.80141 73.287 72.955 73.756 0 78 27 4 0.998485225435124 0.00167950808403719 0.062863700283253 9.0844E-23 1 17178 267.41 216.13 4 60271000 15393 21666 15002 19799 25592 16212 28389 20937 20712 14118 14564 20456 15264 20386 25378 16496 28553 21244 20762 13779 1 1 1 1 1 1 1 1 1 1 2153 1636 1890 1995 2412 2412 3024;3025 ILSQSTDSLNMR 12 Phospho (STY) _ILS(ph)QSTDSLNMR_ ILS(0.851)QS(0.107)T(0.041)DSLNMR ILS(9)QS(-9)T(-13.12)DS(-34.25)LNMR 0 0 1 0 Q92974 Q92974 Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.413391113281 2 722.828724 1443.64289 34575.8163295403 2.0656 0.0014931 158520 114.58 158520 114.58 837.410412091521 74.937 0.49448 74.937 74.682 75.176 -1.4211E-14 41 16 3 0.984330157524833 0.00156043181118287 0.0239253422272725 2.0633E-07 1 17589 164.57 137.15 4 11068000 14074 11220 13147 11285 14826 13992 15655 13442 12551 14724 13314 10600 13313 11627 14955 13924 15810 13948 12515 14175 1 1 1 1 1 1 1 1 1 1 2154 1636 1890 1995 2413 2413 3024;3025 IMATPEQVGK 10 Phospho (STY) _IMAT(ph)PEQVGK_ IMAT(1)PEQVGK IMAT(111.94)PEQVGK 0 0 1 0 P12956 P12956 P12956 XRCC6 X-ray repair cross-complementing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.956604003906 3 385.18228 1152.52501 44346.4804668144 1.1145 0.00042927 396630 152.77 396630 152.78 537.957057342683 65.316 0.60661 65.316 65.025 65.631 0 47 20 3 0.944848705783015 0.00112481799892667 0.0394699471866919 0.00030449 1 15370 111.94 80.751 1 8661000 5055.1 4590.3 4745.3 4723.9 5906.7 5463.4 4886.8 5645.7 4864.4 2682.4 4782.3 4337.1 4808.4 4854.1 5911.1 5450.6 5022.7 5736.8 4800.6 2656.5 1 1 1 1 1 1 1 1 1 1 2155 372 1891 1996 2414 2414 4391 IMGPNYTPGKK 11 Phospho (STY) _IMGPNYT(ph)PGKK_ IMGPNYT(1)PGKK IMGPNY(-33.83)T(33.83)PGKK 0 0 1 1 P13639 P13639 P13639 EEF2 Elongation factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.369750976563 3 429.205196 1284.59376 38930.5742726887 1.9818 0.00085061 533920 229.16 533930 229.16 658.368368529129 62.62 0.58415 62.62 62.348 62.932 0 49 19 3 0.725399747420197 0.00268438666137716 0.0345501256890928 0.045208 1 14738 63.128 50.915 2 40533000 18481 18887 17477 17904 11725 19884 11769 16178 21834 5029.9 17484 17836 17586 18475 12248 19805 12254 16523 21117 5110.7 1 1 1 1 1 1 1 1 1 1 2156 378 1892 1997 2415 2415 4394 IMNTFSVVPSPK 12 Phospho (STY) _IMNTFSVVPS(ph)PK_ IMNTFS(0.004)VVPS(0.996)PK IMNT(-42.81)FS(-23.55)VVPS(23.55)PK 0 0 1 0 P07437;P68371;Q13509;P04350 P07437 P07437 TUBB;TUBB4B;TUBB3;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.337890625 3 467.227889 1398.66184 40321.852975304 1.9007 0.00088807 326980 152.78 326980 152.78 620.003089272966 94.223 0.6653 94.223 93.878 94.543 1.4211E-14 69 22 4 0.902545587632963 0.00284847608535049 0.0473755958946956 0.0084403 2 21915 76.073 25.949 3 10700000 6105.9 10213 6807.5 9990.8 12348 7732.9 11689 10156 11443 76227 5780.4 9646.3 6881 10235 12194 8025.8 11924 12390 11302 72012 2 2 2 2 2 2 2 2 2 2 2157 320 1893 1998 2416;2417 2416 523 IMSCSPDTQCSR 12 Phospho (STY) _IMSCS(ph)PDTQCSR_ IMS(0.01)CS(0.99)PDT(0.001)QCSR IMS(-20.12)CS(20.12)PDT(-32.67)QCS(-94.7)R 0 0 1 0 Q9C0C9 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.862731933594 2 761.280226 1520.5459 33596.170364013 1.2468 0.00094915 150510 114.58 150510 114.58 875.862331677845 46.537 0.48662 46.537 46.228 46.714 0 36 16 3 0.982720453906471 0.00130882268344139 0.021616136784425 1.3139E-10 1 10714 176.58 162.59 4 23591000 19196 30066 20762 29203 30072 20683 27434 23117 31617 7168.8 18170 28397 20925 29901 29934 21156 28167 23309 31020 7285.3 1 1 1 1 1 1 1 1 1 1 2158 1886 1894 1999 2418 2418 3437 IMVHSPTKPASYSVK 15 Oxidation (M),Phospho (STY) _IM(ox)VHS(ph)PTKPASYSVK_ IM(1)VHSPTKPASYSVK IMVHS(0.989)PT(0.011)KPASYSVK IM(130.06)VHSPTKPASYSVK IMVHS(19.42)PT(-19.42)KPAS(-59.44)Y(-61.23)S(-68.02)VK 0 1 1 1 Q5VVJ2 Q5VVJ2 Q5VVJ2 MYSM1 Histone H2A deubiquitinase MYSM1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.088317871094 4 435.965216 1739.83176 40702.6637395079 1.7253 0.00075215 394230 171.87 394230 171.87 608.088035119869 57.255 0.52105 57.255 56.985 57.506 0 56 17 4 0.933758044379975 0.00181437671170601 0.0284926830927477 4.9708E-05 1 13403 130.06 100.98 5 10633000 8475.7 9679 9279.1 7858.9 9542 9562.4 9796.3 9217.3 9555.7 2683.5 8023.2 9133.1 9301 8207.7 9671.1 9509.6 9953 9339.8 9438.8 2740.1 1 1 1 1 1 1 1 1 1 1 2159 1207 1895 2000 2419 2419 158 2123 IMVHSPTKPASYSVK 15 Phospho (STY) _IMVHS(ph)PTKPASYSVK_ IMVHS(0.977)PT(0.023)KPASYSVK IMVHS(16.25)PT(-16.25)KPAS(-71.81)Y(-97.74)S(-96.21)VK 0 0 1 1 Q5VVJ2 Q5VVJ2 Q5VVJ2 MYSM1 Histone H2A deubiquitinase MYSM1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 604.090270996094 4 431.966487 1723.83684 39831.7228126756 1.3073 0.00056473 397880 171.87 397880 171.87 604.089917079988 62.238 0.48343 62.238 61.949 62.433 0 54 16 4 0.987747265184124 0.00250428159421398 0.044420798881051 1.3768E-08 1 14593 175.52 139.76 5 16235000 12002 14292 11112 11306 11446 12268 12657 13315 14502 2806.2 11353 13484 11247 11806 11615 12272 12876 13400 14231 2950.5 1 1 1 1 1 1 1 1 1 1 2160 1207 1895 2001 2420 2420 2123 INKTSPVTASDPAGPSYAAATLQASSAASSASPVSR 36 Phospho (STY) _INKT(ph)SPVTASDPAGPSYAAATLQASSAASSASPVSR_ INKT(0.48)S(0.48)PVT(0.038)AS(0.002)DPAGPSYAAATLQASSAASSASPVSR INKT(0)S(0)PVT(-11.02)AS(-23.57)DPAGPS(-91.99)Y(-107)AAAT(-141.87)LQAS(-192.73)S(-197.51)AAS(-205)S(-207.9)AS(-212.31)PVS(-215.37)R 0 0 1 1 P18887 P18887 P18887 XRCC1 DNA repair protein XRCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 990.510559082031 4 875.42416 3497.66754 31958.4672575782 2.1129 0.0018497 130890 114.58 130890 114.58 990.257003742346 75.036 0.48888 75.036 74.797 75.286 0 65 16 5 0.789420699876394 0.00386169760538489 0.04638040016374 3.151E-18 1 17638 217.41 190.91 13 20470000 1419.5 2737.4 1823.9 2838.3 2340.6 2005 1979 3427.7 3045.6 24677 1344.7 2586.5 1818.9 2894.7 2340.6 2111.2 2061 4126.7 2959.9 23316 1 1 1 1 1 1 1 1 1 1 2161 435 1896 2002 2421 2421 708;4413 INNVPAEGENEVNNELANR 19 Unmodified _INNVPAEGENEVNNELANR_ 0 0 0 0 Q9NUQ9 Q9NUQ9 Q9NUQ9 FAM49B Protein FAM49B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.397521972656 3 699.338284 2094.99302 35192.7987631802 1.7965 0.0012564 109230 76.388 109230 76.39 776.060884985993 64.95 0.4546 64.95 64.684 65.138 0 49 15 4 0.986393430822828 0.0019411796385195 0.0208131546528988 0.0041864 1 15244 91.475 74.723 1 22743000 9163.6 7175.3 11055 8348.8 6481.8 9224.5 8282.8 9021.3 8561.6 16332 8678.2 6785 10970 8514.7 6873.4 9235.3 8352.3 9549 8436 15587 1 1 1 1 1 1 1 1 1 1 2162 2041 1897 2003 2422 2422 INPPSSGGTSSSPIK 15 Phospho (STY) _INPPSSGGTSSS(ph)PIK_ INPPSSGGTS(0.004)S(0.205)S(0.79)PIK INPPS(-47.63)S(-43.25)GGT(-32.13)S(-22.96)S(-5.86)S(5.86)PIK 0 0 1 0 P14859 P14859 P14859 POU2F1 POU domain, class 2, transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.348083496094 3 503.571261 1507.69195 38744.5990554415 1.694 0.00085303 303380 152.78 303390 152.78 656.681099380197 56.033 1.0924 56.033 55.449 56.541 0 134 36 5 0.955124129084237 0.00162073741015509 0.0224447866485869 0.00010673 1 12993 114.88 75.376 6 93502000 10913 11175 12550 11632 10664 11002 11798 11423 9997.5 5365 10333 10559 12522 11906 10948 11071 11906 11603 9940.9 5316.1 1 1 1 1 1 1 1 1 1 1 2163 390 1898 2004 2423 2423 622 INPYMSSPCHIEMILTEK 18 2 Oxidation (M),Phospho (STY) _INPYM(ox)S(ph)SPCHIEM(ox)ILTEK_ INPYM(1)SSPCHIEM(1)ILTEK INPYMS(0.592)S(0.408)PCHIEMILTEK INPYM(120.64)SSPCHIEM(120.64)ILTEK INPY(-55.81)MS(1.62)S(-1.62)PCHIEMILT(-97.43)EK 0 2 1 0 P18621 P18621 P18621 RPL17 60S ribosomal protein L17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.11376953125 3 758.999669 2273.97718 33111.1655100899 2.0808 0.0015793 201290 152.78 201290 152.78 912.110204972233 92.468 0.54639 92.468 92.084 92.63 0 37 18 3 0.939003510587145 0.00215975605349427 0.0618849288254981 3.6645E-05 1 21517 120.64 105.22 4 8301800 3775.6 5819.5 4800.2 5770.2 4457.5 4671.2 5951.5 6021.8 6584.7 24469 3576.5 5497.2 4773.2 5910 4565.4 4794.3 6003.7 6725.3 6470.2 23180 1 1 1 1 1 1 1 1 1 1 2164 430 1899 2005 2424 2424 56;57 701;702 INPYMSSPCHIEMILTEK 18 Oxidation (M),Phospho (STY) _INPYM(ox)SS(ph)PCHIEMILTEK_ INPYM(1)SSPCHIEMILTEK INPYMS(0.361)S(0.639)PCHIEMILTEK INPYM(103.69)SSPCHIEM(-103.69)ILTEK INPY(-62.78)MS(-2.49)S(2.49)PCHIEMILT(-111.76)EK 0 1 1 0 P18621 P18621 P18621 RPL17 60S ribosomal protein L17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 906.779602050781 3 753.668031 2257.98226 32980.5879712063 1.452 0.0010943 202710 152.78 202710 152.78 906.443276147717 95.133 0.59263 95.133 94.827 95.42 0 48 20 4 0.983665107667977 0.00189003373703309 0.0203374576138663 7.2359E-08 1 22130 165.88 137.55 8 28925000 6140.8 10482 6466.4 8838.6 6832.2 8418.1 11997 11178 11300 30363 5812 9892.2 6506.8 9168.7 6984.1 8548.5 11945 12020 11179 28849 1 1 1 1 1 1 1 1 1 1 2165 430 1899 2006 2425 2425 56;57 701;702 INPYMSSPCHIEMILTEK 18 Oxidation (M),Phospho (STY) _INPYMSS(ph)PCHIEM(ox)ILTEK_ INPYMSSPCHIEM(1)ILTEK INPYMS(0.215)S(0.785)PCHIEMILTEK INPYM(-93.72)SSPCHIEM(93.72)ILTEK INPY(-61.07)MS(-5.63)S(5.63)PCHIEMILT(-107.14)EK 0 1 1 0 P18621 P18621 P18621 RPL17 60S ribosomal protein L17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 906.77978515625 3 753.668031 2257.98226 32980.9353456242 1.8287 0.0013782 202710 152.78 202710 152.78 907.111313824763 99.591 0.2552 99.591 99.438 99.693 0 28 8 5 0.944621094581792 0.00346265000399664 0.0995350422103322 2.0699E-07 1 23151 147 124.89 8 30860000 12583 19192 13206 15799 13824 15935 20084 19034 20879 47180 11909 18111 13282 16431 14081 16094 20165 20394 20567 44866 1 1 1 1 1 1 1 1 1 1 2166 430 1899 2006 2426 2426 56;57 701;702 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 Unmodified _INSSPNVNTTASGVEDLNIIQVTIPDDDNER_ 0 0 0 0 P78347 P78347 P78347 GTF2I General transcription factor II-I MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1191.26220703125 3 1114.20949 3339.60664 29003.1900512845 1.7035 0.001898 68559 76.389 68560 76.391 1191.26831021364 96.171 0.29025 96.171 96.027 96.318 0 12 9 2 0.928771311846342 0.000958673199328722 0.0312430894232323 2.1407E-08 1 22354 171.15 148.1 1 6216200 1063.8 752.06 1104.3 1304.7 1280.1 983.6 1762.5 1359.4 1132.5 18322 1006.7 713.59 1112.7 1300.7 1294.9 1039.5 1753.7 1901.1 1144.1 17284 1 1 1 1 1 1 1 1 1 1 2167 798 1900 2007 2427 2427 INSVGSTASSSQPLLVHDDV 20 Phospho (STY) _INSVGS(ph)TASSSQPLLVHDDV_ INS(0.033)VGS(0.94)T(0.026)AS(0.001)SSQPLLVHDDV INS(-14.61)VGS(14.61)T(-15.58)AS(-28.08)S(-40.16)S(-47.75)QPLLVHDDV 0 0 1 0 P10721 P10721 P10721 KIT Mast/stem cell growth factor receptor Kit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.052734375 3 702.663208 2104.96779 37064.1276356531 1.6816 0.0011816 108710 76.387 108710 76.388 779.383472176274 78.231 0.33894 78.231 78.008 78.347 0 22 11 3 NaN 0 0 5.8388E-05 1 18351 107.32 95.339 6 6038200 4402.9 5037.4 4824.4 4843.6 4509.6 4459 5262.7 5378.6 4654.4 15454 4167.9 4757.6 4831.2 4978.9 4605 4527.3 5304.2 5825.1 4618.3 14676 1 1 1 1 1 1 1 1 1 1 2168 356 1901 2008 2428 2428 579 IPAKLSPTQLR 11 Phospho (STY) _IPAKLS(ph)PTQLR_ IPAKLS(0.987)PT(0.013)QLR IPAKLS(18.68)PT(-18.68)QLR 0 0 1 1 Q9UNS1 Q9UNS1 Q9UNS1 TIMELESS Protein timeless homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 588.018737792969 3 435.242639 1302.70609 40887.1477943053 1.9152 0.00083357 351010 152.78 351010 152.78 588.352247440893 71.739 0.58473 71.739 71.401 71.986 1.4211E-14 58 19 4 0.853989715683428 0.00248882101395958 0.0295627484680028 0.0080197 1 16805 76.151 47.574 2 30820000 10381 12942 10302 13895 4389.9 9396.1 5467 9276.3 14675 3435.7 9822.3 12231 10308 14137 4827.9 9624 5765.4 9412.9 14090 3449.8 1 1 1 1 1 1 1 1 1 1 2169 2208 1902 2009 2429 2429 3996 IPAPKESLR 9 Phospho (STY) _IPAPKES(ph)LR_ IPAPKES(1)LR IPAPKES(40.77)LR 0 0 1 1 Q99661 Q99661 Q99661 KIF2C Kinesin-like protein KIF2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 516.96923828125 3 364.193396 1089.55836 43873.772417409 0.92341 0.0003363 419490 152.78 419490 152.78 516.968814315491 57.081 0.40763 57.081 56.868 57.276 -7.1054E-15 30 13 3 0.890433808540862 0.00107710594595549 0.0156970121938183 0.040605 1 13360 40.767 15.05 1 9056500 7793.2 10761 6363 11992 7031.8 6573.1 5903.2 8054.6 12235 2108.7 7369 10173 6495.5 12151 7086.4 6853 6236.5 8085.4 11804 2172 1 1 1 1 1 1 1 1 1 1 2170 1781 1903 2010 2430 2430 3283 IPCKSSPELEDTATSSK 17 Phospho (STY) _IPCKSS(ph)PELEDTATSSK_ IPCKS(0.099)S(0.901)PELEDTATSSK IPCKS(-9.59)S(9.59)PELEDT(-68.27)AT(-101.65)S(-133.6)S(-138.8)K 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.454833984375 3 643.955223 1928.84384 33575.2011983167 2.3008 0.0014816 355870 229.16 355870 229.16 873.452553539841 61.3 0.5848 61.3 61.009 61.594 0 82 19 5 0.989555464290258 0.00557334399953884 0.0689948053041787 7.2864E-23 1 14347 267.54 234.98 6 95913000 23162 40272 22450 43103 12496 20622 13782 26140 45592 19490 21915 38059 22528 43723 13317 21780 14838 26594 43636 18957 1 1 1 1 1 1 1 1 1 1 2171 603 1904 2011 2431 2431 986;987 IPCKSSPELEDTATSSK 17 Phospho (STY) _IPCKS(ph)SPELEDTATSSK_ IPCKS(0.591)S(0.409)PELEDTATSSK IPCKS(1.6)S(-1.6)PELEDT(-48.62)AT(-56.91)S(-56.97)S(-61.21)K 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.332153320313 4 483.218236 1928.84384 37557.1487959889 2.3469 0.0011341 355680 171.87 355680 171.87 655.338145311545 61.292 0.72931 61.292 60.951 61.68 7.1054E-15 69 24 4 0.380923392774463 0.00134231875570141 0.0465364737020147 0.016172 1 14424 65.915 47.083 6 49626000 24367 24116 22415 22290 24339 21048 22899 24194 25324 10506 23050 22771 22704 22978 24568 21212 23445 24463 24884 10453 1 1 1 1 1 1 1 1 1 1 2172 603 1904 2011 2432 2432 986;987 IPESETESTASAPNSPR 17 Phospho (STY) _IPESETESTASAPNS(ph)PR_ IPESETESTASAPNS(1)PR IPES(-90.57)ET(-76.67)ES(-60.25)T(-45.21)AS(-33.9)APNS(33.9)PR 0 0 1 0 Q07889 Q07889 Q07889 SOS1 Son of sevenless homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.658996582031 3 618.270199 1851.78877 34420.5739623798 1.6896 0.0010446 123550 76.388 123550 76.389 694.658171808196 45.817 0.58303 45.817 45.526 46.109 0 55 19 4 0.980641880632498 0.00198516695002457 0.0168146728430153 9.4505E-11 1 10527 184.32 167.58 6 34798000 11911 15861 12763 13951 16938 11928 16481 13419 13559 5558.5 11274 14972 12853 14408 16933 12075 16718 13570 13502 5544.6 1 1 1 1 1 1 1 1 1 1 2173 883 1905 2012 2433 2433 1430 IPGGNIYISPLK 12 Phospho (STY) _IPGGNIYIS(ph)PLK_ IPGGNIYIS(1)PLK IPGGNIY(-40.71)IS(40.71)PLK 0 0 1 0 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 604.349426269531 3 451.238894 1350.69485 40460.8800580078 0.89619 0.0004044 338570 152.78 338570 152.78 604.014388776571 91.474 0.77026 91.474 91.14 91.91 0 100 26 5 0.988472740598812 0.00348633292472265 0.0313775870959352 0.00020074 1 21276 101.2 72.906 2 111870000 11975 4490.4 14254 4961.5 3631 11724 3675.1 7186.9 4507.6 5695.2 11340 4244.6 14092 5174.2 4313.4 11403 3761.6 7556.4 4412.3 5529.1 1 1 1 1 1 1 1 1 1 1 2174 310 1906 2013 2434 2434 507 IPGGNIYISPLKSPYK 16 Phospho (STY) _IPGGNIYIS(ph)PLKSPYK_ IPGGNIYIS(0.987)PLKS(0.013)PYK IPGGNIY(-80.41)IS(18.65)PLKS(-18.65)PY(-69.56)K 0 0 1 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.150817871094 3 609.653256 1825.93794 34383.8823818459 2.2733 0.0013859 375890 229.16 375890 229.16 839.150220878307 88.86 0.84177 88.86 88.479 89.321 -1.4211E-14 121 28 6 0.950508321525772 0.010023447027124 0.355412681541152 5.3478E-07 1 20684 142.85 120.02 4 88472000 37604 11723 41354 11623 11551 42179 10499 25416 12835 15211 35597 11074 41059 12431 13469 40733 10801 26602 12566 14911 1 1 1 1 1 1 1 1 1 1 2175 310 1907 2014 2435 2435 507 IPGTPGAGGRLSPENNQVLTK 21 Phospho (STY) _IPGTPGAGGRLS(ph)PENNQVLTK_ IPGTPGAGGRLS(1)PENNQVLTK IPGT(-42.46)PGAGGRLS(42.46)PENNQVLT(-74.01)K 0 0 1 1 Q16514 Q16514 Q16514 TAF12 Transcription initiation factor TFIID subunit 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.481384277344 3 729.370358 2185.08925 33340.0835791551 1.7989 0.001312 209460 152.78 209460 152.78 882.479631531908 70.258 0.69545 70.258 69.96 70.655 0 87 23 6 0.957000791029255 0.0073899631004403 0.0869241473002854 8.8005E-08 1 16448 148.3 120.74 3 114140000 12402 16923 13513 15297 17566 12849 17827 17007 19657 52801 11739 15977 13593 15766 17592 13140 18184 18489 19318 50112 1 1 1 1 1 1 1 1 1 1 2176 1104 1908 2015 2436 2436 1925 IPMTPTSSFVSPPPPTASPHSNR 23 Oxidation (M),Phospho (STY) _IPM(ox)TPTSSFVSPPPPTAS(ph)PHSNR_ IPM(1)TPTSSFVSPPPPTASPHSNR IPMTPTSSFVS(0.003)PPPPT(0.082)AS(0.646)PHS(0.269)NR IPM(90.39)TPTSSFVSPPPPTASPHSNR IPMT(-65.03)PT(-61.25)S(-55.98)S(-52.98)FVS(-23.17)PPPPT(-8.98)AS(3.81)PHS(-3.81)NR 0 1 1 0 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 911.114074707031 3 834.389201 2500.14577 32345.9246335905 1.6877 0.0014082 91549 76.387 91550 76.389 911.111582600089 67.564 1.0005 67.564 67.005 68.005 0 129 33 5 0.824412664228526 0.00147599699475734 0.0433645048844202 0.004462 1 15783 90.388 77.706 8 31952000 5096.2 5034.5 5093.5 5035.9 5418.3 5562.9 4751.1 4726.6 5443.2 10933 4822.3 4755.9 5131.8 5179 5470.6 5562.5 4887.2 5102.9 5341.4 10404 1 1 1 1 1 1 1 1 1 1 2177 1350 1909 2016 2437 2437 165 2440 IPMTPTSSFVSPPPPTASPHSNR 23 Phospho (STY) _IPMTPTSSFVSPPPPTAS(ph)PHSNR_ IPMTPT(0.001)S(0.002)S(0.002)FVS(0.108)PPPPT(0.199)AS(0.577)PHS(0.11)NR IPMT(-35.3)PT(-29.36)S(-23.65)S(-23.65)FVS(-7.27)PPPPT(-4.63)AS(4.63)PHS(-7.22)NR 0 0 1 0 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 905.442565917969 3 829.057563 2484.15086 32680.6728831198 1.913 0.001586 92138 76.388 92140 76.389 905.779632588803 77.057 1.0146 77.057 76.472 77.487 -1.4211E-14 158 34 6 0.823655084116222 0.00131569467923506 0.035143082174384 0.0081189 1 17985 80.342 70.243 8 65545000 3712.9 3926.2 3922.7 4114.2 3779.8 3721.7 3601.3 4516.6 2821.1 18043 3514.2 3710 3935.8 4206.6 3840.9 3791.9 3653.1 5043.3 2816.7 17094 1 1 1 1 1 1 1 1 1 1 2178 1350 1909 2017 2438 2438 2440 IPNSYEVLFPESPAR 15 Phospho (STY) _IPNSYEVLFPES(ph)PAR_ IPNSYEVLFPES(1)PAR IPNS(-86.17)Y(-82.5)EVLFPES(82.5)PAR 0 0 1 0 O14686 O14686 O14686 KMT2D Histone-lysine N-methyltransferase 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.008422851563 3 600.285232 1797.83387 38166.905961858 1.7497 0.0010503 127250 76.388 127250 76.389 677.007283491987 95.725 0.72541 95.725 95.361 96.087 0 55 24 3 0.963506736466824 0.00224330121478763 0.0481670188328096 0.00013421 1 22243 108.71 75.024 3 7983600 2009.9 2442.3 2329.8 3194.6 2208 1846.6 2751.4 2655.2 2835.3 11783 1903.1 2311.4 2327.2 3212.5 2255.6 1943.4 2776.9 2987.1 2794 11157 1 1 1 1 1 1 1 1 1 1 2179 63 1910 2018 2439 2439 104 IPNYQLSPTK 10 Phospho (STY) _IPNYQLS(ph)PTK_ IPNYQLS(1)PTK IPNY(-110.12)QLS(35.61)PT(-35.61)K 0 0 1 0 O60934 O60934 O60934 NBN Nibrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 566.980285644531 3 414.203961 1239.59005 41823.399652959 1.7458 0.00072312 368840 152.78 368840 152.78 566.979394138252 71.553 0.66758 71.553 71.256 71.924 0 69 22 4 0.639002700473307 0.00317809885275747 0.102034149207044 3.6049E-05 1 16765 133.98 94.395 3 31685000 7350.9 11900 9246.8 11937 14603 10008 13831 11519 12743 3277.7 6963 11242 9266.2 12223 14491 10143 14086 11595 12619 3352.9 1 1 1 1 1 1 1 1 1 1 2180 162 1911 2019 2440 2440 279 IPNYQLSPTKLPSINK 16 Phospho (STY) _IPNYQLS(ph)PTKLPSINK_ IPNYQLS(0.905)PT(0.095)KLPSINK IPNY(-130.08)QLS(9.8)PT(-9.8)KLPS(-52.43)INK 0 0 1 1 O60934 O60934 O60934 NBN Nibrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.167358398438 3 631.667565 1891.98086 33808.7589984716 1.5838 0.0010004 362790 229.16 362790 229.16 861.165012716459 86.474 0.63104 86.474 86.187 86.818 1.4211E-14 58 21 3 0.989328687176106 0.0069315729171275 0.114955426455294 9.5212E-16 1 20149 213.5 176.76 4 92400000 20208 27454 22818 26019 16162 22342 17584 22709 30117 18721 19131 25927 22748 26744 16827 22598 18174 23329 29185 18153 1 1 1 1 1 1 1 1 1 1 2181 162 1912 2020 2441 2441 279 IPRPLSPTK 9 Phospho (STY) _IPRPLS(ph)PTK_ IPRPLS(0.999)PT(0.001)K IPRPLS(31.99)PT(-31.99)K 0 0 1 1 Q13625 Q13625 Q13625 TP53BP2 Apoptosis-stimulating of p53 protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 516.309326171875 3 363.533642 1087.5791 43785.0863724527 0.84351 0.00030664 420250 152.78 420250 152.78 516.308946790911 60.867 0.72927 60.867 60.489 61.218 -7.1054E-15 95 24 5 0.963619492890605 0.00451526984502333 0.0756906151109692 0.0017402 1 14220 96.82 64.758 2 133240000 9978.3 22995 9857.9 23391 17262 9077 17879 16852 23330 2206 9441.5 21725 10025 23763 17094 9838.9 18319 16669 22789 2467.3 1 1 1 1 1 1 1 1 1 1 2182 976 1913 2021 2442 2442 1652 IPSAVSTVSMQNIHPK 16 Phospho (STY) _IPS(ph)AVSTVSMQNIHPK_ IPS(1)AVSTVSMQNIHPK IPS(35.95)AVS(-35.95)T(-40.99)VS(-71.35)MQNIHPK 0 0 1 0 P19634 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.070861816406 3 596.961983 1787.86412 36716.4784109989 1.6415 0.00097993 255920 152.78 255920 152.78 750.071154226294 79.721 0.54261 79.721 79.446 79.989 0 43 18 3 0.927076772208101 0.00261373630468286 0.0146249321284392 4.3341E-07 1 18680 149.44 133.09 4 9979200 6281.5 5654.5 6433.3 6141.5 7587.5 5036.9 9590 8295.7 6534.8 14598 5944.5 5344.4 6487.1 6258.4 7657.1 5166.4 9582 8634.8 6577.5 13938 1 1 1 1 1 1 1 1 1 1 2183 441 1914 2022 2443 2443 718 IPSIVSSPLNSPLDR 15 Phospho (STY) _IPSIVSS(ph)PLNSPLDR_ IPSIVS(0.195)S(0.805)PLNSPLDR IPS(-43.67)IVS(-6.16)S(6.16)PLNS(-35.81)PLDR 0 0 1 0 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.676147460938 3 558.953594 1673.83895 39891.3294992556 1.7849 0.00099765 136660 76.387 136660 76.388 635.340719848538 95.639 0.75339 95.639 95.333 96.087 0 65 25 4 0.965640065533517 0.00222500316185515 0.0423713335886837 0.01012 1 22230 73.809 55.064 4 8091900 1890.8 1962.9 1942.5 2126.3 2025.9 2298.5 1835.6 2705.2 2473.4 7466.9 1789.4 1855.2 1953.7 2176 2048.8 2315.4 1895.1 2922.8 2413.4 7093.6 1 1 1 1 1 1 1 1 1 1 2184 654 1915 2023 2444 2444 1088 IPSPIGFTPGPQQLLGDPFQGMR 23 Oxidation (M),Phospho (STY) _IPS(ph)PIGFTPGPQQLLGDPFQGM(ox)R_ IPSPIGFTPGPQQLLGDPFQGM(1)R IPS(1)PIGFTPGPQQLLGDPFQGMR IPSPIGFTPGPQQLLGDPFQGM(154.14)R IPS(35.95)PIGFT(-35.95)PGPQQLLGDPFQGMR 0 1 1 0 Q9NRA8 Q9NRA8 Q9NRA8 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 927.136474609375 3 850.413458 2548.21855 32571.5067558278 1.1344 0.00096468 89825 76.388 89826 76.389 927.13596393108 101.29 0.20149 101.29 101.19 101.39 0 23 6 6 0.942018176945229 0.0268306100545662 0.556688514406029 4.6831E-08 1 23782 154.14 131.16 2 159150000 18872 13633 15426 14968 14759 16686 14219 24925 15513 141810 17845 12886 15722 15314 15010 17019 14535 28955 15252 134100 1 1 1 1 1 1 1 1 1 1 2185 2014 1916 2024 2445 2445 214 3660 IPSPNILK 8 Phospho (STY) _IPS(ph)PNILK_ IPS(1)PNILK IPS(106)PNILK 0 0 1 0 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.424011230469 2 481.259543 960.504534 37124.4853392109 2.3407 0.0011265 476170 229.16 476180 229.16 710.422319204661 83.782 0.63186 83.782 83.47 84.102 0 72 21 5 0.926217357363113 0.00287233511770976 0.114297072056541 0.0013853 1 19555 106 77.357 1 64667000 18682 21292 17501 20055 9907.6 16805 10819 15707 20810 8265.9 17674 20107 17599 20615 10525 16991 11242 16047 20109 8146.9 1 1 1 1 1 1 1 1 1 1 2186 1204 1917 2025 2446 2446 2111 IPSWSGR 7 Phospho (STY) _IPS(ph)WSGR_ IPS(0.906)WS(0.094)GR IPS(9.84)WS(-9.84)GR 0 0 1 0 O94806 O94806 O94806 PRKD3 Serine/threonine-protein kinase D3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.278198242188 2 441.69711 881.379667 41942.2465081751 1.4971 0.00066126 259410 114.58 259410 114.58 556.278070174697 67.516 0.64465 67.516 67.149 67.794 0 39 21 2 0.784497835629765 0.0010446094846196 0.0530701590097065 0.02021 1 15861 70.747 33.02 2 9815200 8126.4 7137.4 9937.7 7196.6 10143 10697 8592.4 8261.4 7087.3 2634.5 7696.5 6742.8 9902.2 7441.9 10258 10540 8779.6 8460.5 7056.9 2671.9 1 1 1 1 1 1 1 1 1 1 2187 219 1918 2026 2447 2447 380 IQALQQQADEAEDR 14 Unmodified _IQALQQQADEAEDR_ 0 0 0 0 P67936 P67936 P67936 TPM4 Tropomyosin alpha-4 chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 922.972900390625 2 807.88954 1613.76453 32497.2039671582 1.4935 0.0012066 141830 114.58 141830 114.58 922.972432660438 61.711 0.44397 61.711 61.448 61.892 -7.1054E-15 37 14 4 0.958236518178133 0.00068660332983545 0.0200083964620559 9.2203E-10 1 14461 181.98 156.32 1 17754000 19215 10208 18025 12152 14295 20249 14219 15551 8900.2 19806 18178 9654.3 18173 12489 14721 19914 14332 16378 9007.5 19010 1 1 1 1 1 1 1 1 1 1 2188 787 1919 2027 2448 2448 IQAQFGPLAQLSPQER 16 Phospho (STY) _IQAQFGPLAQLS(ph)PQER_ IQAQFGPLAQLS(1)PQER IQAQFGPLAQLS(168.81)PQER 0 0 1 0 P51692 P51692 P51692 STAT5B Signal transducer and activator of transcription 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.365417480469 3 621.643531 1861.90876 38264.4052114412 1.7565 0.0010919 122880 76.388 122880 76.389 698.366208639214 88.707 0.60074 88.707 88.366 88.967 0 65 20 4 0.892391013709281 0.00482281815729711 0.134726852047324 1.1764E-07 1 20674 168.81 148.16 1 10387000 3890.8 5643.1 4641.3 4663.7 5799.4 4669.2 5052.6 5295.6 5332.8 9094.8 3684.5 5325.3 4643.2 4848.4 5806.6 4704.9 5186.7 5561.7 5250 8686.4 1 1 1 1 1 1 1 1 1 1 2189 682 1920 2028 2449 2449 1147 IQEIIEQLDVTTSEYEK 17 Unmodified _IQEIIEQLDVTTSEYEK_ 0 0 0 0 P10809 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.123046875 3 680.012404 2037.01538 33625.5511966036 1.4009 0.00095261 224670 152.78 224670 152.78 833.123077651741 101.76 0.14283 101.76 101.64 101.79 0 6 4 2 0.70305973986557 0.00791534003583711 0.193869294824379 3.9893E-07 1 23953 144.66 124.19 1 80432000 23630 30099 28001 22326 30837 22927 33025 33397 29975 43715 22377 28389 27983 23408 31154 23168 33428 34411 29706 41936 1 1 1 1 1 1 1 1 1 1 2190 357 1921 2029 2450 2450 IQIISTDSAVASPQR 15 Phospho (STY) _IQIISTDSAVAS(ph)PQR_ IQIISTDSAVAS(1)PQR IQIIS(-83.42)T(-76.29)DS(-52.67)AVAS(52.67)PQR 0 0 1 0 P49116 P49116 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 632.33349609375 3 555.945098 1664.81347 39595.2419253597 1.6123 0.00089632 137400 76.388 137400 76.389 632.333138261801 73.171 0.57681 73.171 72.867 73.443 0 43 19 3 0.929459227818557 0.00105919466351206 0.0266505151853545 7.0217E-07 1 17166 143.52 131.93 4 14239000 4235.9 11052 5390.2 11412 7623 4747.8 7579.6 7153 8943.7 5142.6 4012.5 10442 5388.5 11588 7604.7 5096.3 7754.8 7236.7 8766.8 5007.9 1 1 1 1 1 1 1 1 1 1 2191 633 1922 2030 2451 2451 1047 IQIVTAVDASGSPK 14 Phospho (STY) _IQIVTAVDASGS(ph)PK_ IQIVTAVDASGS(1)PK IQIVT(-123.84)AVDAS(-36.33)GS(36.33)PK 0 0 1 0 P49116 P49116 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.358459472656 3 489.248118 1464.72252 39675.9023273675 1.9631 0.00096043 312270 152.78 312270 152.78 642.023522022015 80.437 0.70802 80.437 80.132 80.84 0 65 23 4 0.983184965051668 0.00313915206449336 0.0203918827875924 4.7648E-08 1 18814 174.02 159.33 3 16193000 5994.3 5281.5 6449.5 5844.6 6343.8 5940.5 6489.2 5028.7 5841.9 6702.6 5673.8 4992.5 6467.1 5968.2 6445.4 5951.3 6580.8 5281.4 5791.7 6427.6 1 1 1 1 1 1 1 1 1 1 2192 633 1923 2031 2452 2452 1048 IQPAGNTSPR 10 Phospho (STY) _IQPAGNTS(ph)PR_ IQPAGNT(0.007)S(0.993)PR IQPAGNT(-21.58)S(21.58)PR 0 0 1 0 P49674 P49674 P49674 CSNK1E Casein kinase I isoform epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.342895507813 2 560.76097 1119.50739 37809.840100086 0.96204 0.00053947 204330 114.58 204330 114.58 675.342529797613 35.763 0.49115 35.763 35.505 35.996 0 57 16 5 0.697722267019731 0.00388350358087811 0.0908032113324985 0.00031416 1 8039 112.7 88.614 2 62733000 40124 42403 38974 41149 31594 33680 36445 44018 40885 9684.8 37963 40049 39229 42207 32570 34241 36987 44044 40153 10138 1 1 1 1 1 1 1 1 1 1 2193 645 1924 2032 2453 2453 1066 IQSTPVK 7 Phospho (STY) _IQST(ph)PVK_ IQS(0.075)T(0.925)PVK IQS(-10.89)T(10.89)PVK 0 0 1 0 P62820 P62820 P62820 RAB1A Ras-related protein Rab-1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.88037109375 2 426.714969 851.415384 38587.5481466474 1.4797 0.00063141 537040 229.16 537040 229.17 655.879502636225 47.084 0.37889 47.084 46.858 47.237 0 31 12 3 0.519553169306142 0.0041504766262967 0.235791669216583 0.0026751 1 10883 105.2 62.112 2 46917000 59009 99285 60730 92612 57219 60978 68663 75392 104160 130060 55844 93753 61031 94990 58469 62959 70315 78984 101270 124210 1 1 1 1 1 1 1 1 1 1 2194 770 1925 2033 2454 2454 4495 IREEYPDR 8 Unmodified _IREEYPDR_ 0 0 0 1 P07437;Q9BVA1;Q13885;P68371;CON__ENSEMBL:ENSBTAP00000025008;Q3ZCM7;A6NNZ2;Q9H4B7 P07437 P07437 TUBB;TUBB2B;TUBB2A;TUBB4B;TUBB8;TUBB1 Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 436.236907958984 3 359.848967 1076.52507 47574.2210962703 -0.24617 -8.8585E-05 212280 76.388 212280 76.388 436.236474701064 34.616 0.57456 34.616 34.37 34.945 0 49 19 3 0.905875881454163 0.00204787917517791 0.0324557642159527 1.3445E-05 1 7737 166.19 113.71 1 53547000 19737 24393 20549 23784 17075 20947 19340 21353 24363 1335.3 18679 23039 20606 24412 17570 21130 19715 21443 23826 1751.5 1 1 1 1 1 1 1 1 1 1 2195 320 1926 2034 2455 2455 IRKSNQIPTEVR 12 Phospho (STY) _IRKS(ph)NQIPTEVR_ IRKS(1)NQIPTEVR IRKS(44.9)NQIPT(-44.9)EVR 0 0 1 2 Q9BWH2 Q9BWH2 Q9BWH2 FUNDC2 FUN14 domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.378234863281 3 507.603007 1519.78719 38515.7691232894 1.3769 0.00069893 300970 152.78 300980 152.78 660.712838845659 47.616 0.56445 47.616 47.412 47.976 0 55 19 4 0.980035126217942 0.00329518383397907 0.0131391968410408 0.00014361 1 11009 116.81 89.125 2 120450000 58743 25424 56267 22883 15621 55285 16450 31747 25500 6453.6 55577 24003 56304 24171 18272 53686 16953 32951 24777 6811.6 1 1 1 1 1 1 1 1 1 1 2196 1853 1927 2035 2456 2456 3387 IRLDETDDPDDYGDR 15 Unmodified _IRLDETDDPDDYGDR_ 0 0 0 1 P07384 P07384 P07384 CAPN1 Calpain-1 catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.653869628906 3 598.930743 1793.7704 39227.2655163244 1.2761 0.00076431 127540 76.387 127540 76.388 675.317614143822 55.882 0.86081 55.882 55.623 56.484 0 64 28 4 0.977364433184244 0.00306203935813144 0.0329125259707142 7.1915E-07 1 13028 162.79 137.47 1 41000000 12366 15169 13602 15738 18636 13353 16502 16255 17607 6005.3 11706 14333 13683 16086 18585 13538 16931 16373 17326 6030.9 1 1 1 1 1 1 1 1 1 1 2197 319 1928 2036 2457 2457 IRSSVEK 7 Phospho (STY) _IRSS(ph)VEK_ IRS(0.002)S(0.998)VEK IRS(-26.28)S(26.28)VEK 0 0 1 1 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 452.927032470703 3 300.151309 897.432097 46332.7322939549 0.47735 0.00014328 508990 152.78 508990 152.78 452.926875994185 39.432 0.69048 39.432 39.112 39.803 0 80 23 4 0.870061549533166 0.00471599150296053 0.0815815011036069 0.001332 1 8918 103.42 30.776 2 87751000 26866 31650 26712 33142 24098 25695 26986 27853 31098 2281.6 25421 29907 26880 33818 24654 26119 27444 27924 30510 2793 1 1 1 1 1 1 1 1 1 1 2198 952 1929 2037 2458 2458 1589;1590 IRSSVEKENQK 11 Phospho (STY) _IRSS(ph)VEKENQK_ IRS(0.239)S(0.761)VEKENQK IRS(-5.03)S(5.03)VEKENQK 0 0 1 2 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.727661132813 3 466.564329 1396.67116 37379.8391794281 2.6465 0.0012348 491170 229.16 491170 229.16 695.727264931216 38.197 0.5724 38.197 37.952 38.524 0 73 19 6 0.952233994267562 0.00724109485538433 0.076267652206788 6.2072E-05 1 8622 130.64 103.39 2 240730000 35909 46446 33544 49268 44594 29390 48775 41328 52098 7715.8 33970 43892 34056 50096 44664 30510 49539 41224 51264 8221.8 1 1 1 1 1 1 1 1 1 1 2199 952 1930 2038 2459 2459 1589;1590 IRTPSGEFLER 11 Phospho (STY) _IRTPS(ph)GEFLER_ IRT(0.083)PS(0.917)GEFLER IRT(-10.42)PS(10.42)GEFLER 0 0 1 1 Q9UNN5 Q9UNN5 Q9UNN5 FAF1 FAS-associated factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.613830566406 3 462.225536 1383.65478 42590.6896852971 1.1073 0.00051181 165260 76.388 165260 76.388 538.61325077364 61.895 0.81061 61.895 61.566 62.376 -7.1054E-15 93 27 5 0.994853920953318 0.00517182141773874 0.0854153435221265 3.5758E-07 1 14501 160.03 122.7 2 62134000 4395.2 16277 4420.6 15511 9689.7 3973 10143 10765 15932 2080.2 4159.1 15372 4515.2 15788 9533.9 4586.3 10461 10598 15474 2207.9 1 1 1 1 1 1 1 1 1 1 2200 2207 1931 2039 2460 2460 3994;4815 IRTSPTFR 8 Phospho (STY) _IRT(ph)SPTFR_ IRT(0.408)S(0.408)PT(0.184)FR IRT(0)S(0)PT(-3.45)FR 0 0 1 1 P62750 P62750 P62750 RPL23A 60S ribosomal protein L23a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.845886230469 2 529.263149 1056.51174 40423.5149044228 2.3494 0.0012434 216490 114.58 216490 114.58 643.84451200065 45.969 0.8788 45.969 45.585 46.464 7.1054E-15 99 29 5 0.6624539217513 0.00311239729668522 0.0668764393792337 0.023201 1 10541 66.664 32.941 3 197560000 27457 53179 28268 53310 41842 29090 42739 45802 57073 7812.3 25984 50238 28586 54340 41686 30463 43855 45531 55706 8416.2 1 1 1 1 1 1 1 1 1 1 2201 767 1932 2040 2461 2461 1248;4493 IRTSPTFR 8 Phospho (STY) _IRTS(ph)PTFR_ IRT(0.208)S(0.792)PT(0.001)FR IRT(-5.8)S(5.8)PT(-31.79)FR 0 0 1 1 P62750 P62750 P62750 RPL23A 60S ribosomal protein L23a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 429.565307617188 3 353.177858 1056.51174 47556.3421683646 0.75591 0.00026697 216290 76.387 216290 76.388 429.565374197363 45.979 0.82202 45.979 45.614 46.436 0 106 27 5 0.951857324473357 0.00359575596284546 0.0516201926452911 0.0028435 1 10544 95.483 56.679 3 144640000 12809 26191 14371 25329 16906 13652 18384 20275 27767 1804.4 12126 24737 14415 25872 17037 14292 18899 20135 26999 2168.3 1 1 1 1 1 1 1 1 1 1 2202 767 1932 2040 2462 2462 1248;4493 ISAPELLLHSPAR 13 Phospho (STY) _ISAPELLLHS(ph)PAR_ ISAPELLLHS(1)PAR IS(-89.14)APELLLHS(89.14)PAR 0 0 1 0 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 571.982971191406 3 495.26047 1482.75958 41276.6536013683 1.0472 0.00051861 154240 76.388 154240 76.388 571.648250606111 79.927 0.57809 79.927 79.674 80.252 0 58 19 4 0.981814227492613 0.00374447063283005 0.0424750024488688 8.718E-05 1 18709 119.68 105.65 2 23512000 4660.4 6219 5459.9 5844.7 3418.6 4762.4 3320.4 4952.8 5923.8 3610.1 4412.9 5872.7 5426.7 6006.6 3590.8 4831.1 3455.9 5069.4 5734.6 3513.9 1 1 1 1 1 1 1 1 1 1 2203 1204 1933 2041 2463 2463 2112 ISDAELEAELEK 12 Phospho (STY) _IS(ph)DAELEAELEK_ IS(1)DAELEAELEK IS(118.08)DAELEAELEK 0 0 1 0 Q8WUX9 Q8WUX9 Q8WUX9 CHMP7 Charged multivesicular body protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.324829101563 3 476.216484 1425.62762 39407.1515045508 2.1929 0.0010443 320810 152.77 320810 152.78 628.991303920916 90.172 0.71992 90.172 89.898 90.618 0 57 24 3 0.894182788684068 0.00249999662577147 0.0913264840423948 8.4168E-05 1 20997 118.08 79.714 1 10685000 5377.4 4545.9 4648.2 4675.5 4072.5 4590.6 2695.2 5387.7 5714.7 23775 5085.7 4295.1 4712.8 4791.4 4150.2 4659.9 2892.3 6089.8 5510.6 22512 1 1 1 1 1 1 1 1 1 1 2204 1568 1934 2042 2464 2464 2880 ISDSESEDPPR 11 Phospho (STY) _IS(ph)DSESEDPPR_ IS(0.906)DS(0.094)ESEDPPR IS(9.83)DS(-9.83)ES(-33.38)EDPPR 0 0 1 0 Q96ST2 Q96ST2 Q96ST2 IWS1 Protein IWS1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.840881347656 2 656.258654 1310.50276 35774.5536030255 1.6424 0.0010779 174600 114.58 174600 114.58 770.839888152051 39.961 0.97028 39.961 39.569 40.539 0 67 32 3 0.648120416830183 0.000774867511987419 0.0186612210897714 5.1526E-07 1 9044 162.38 117.31 3 24147000 18792 14443 17662 14389 11640 19546 13103 14913 14806 4837.2 17777 13644 17779 14860 12190 19313 13314 15284 14537 4899.9 1 1 1 1 1 1 1 1 1 1 2205 1751 1935 2043 2465 2465 3211 ISDYFEFAGGSAPGTSPGR 19 Phospho (STY) _ISDYFEFAGGSAPGTS(ph)PGR_ ISDYFEFAGGSAPGT(0.05)S(0.95)PGR IS(-149.54)DY(-168.06)FEFAGGS(-51.61)APGT(-12.81)S(12.81)PGR 0 0 1 0 Q86UE8 Q86UE8 Q86UE8 TLK2 Serine/threonine-protein kinase tousled-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.343200683594 3 665.954322 1994.84114 37235.6224358884 1.6005 0.0010659 114700 76.387 114700 76.388 742.675880484815 95.284 0.5983 95.284 95.081 95.679 0 58 20 4 0.977547669816565 0.00128979234456611 0.0138281152269656 4.5697E-11 1 22163 188.23 171.08 5 30042000 3933.7 3929.3 4480.4 4035.2 3865 4471.5 4411.1 4151.1 4147.6 11466 3724.3 3712.4 4473.5 4143.8 3966 4480.1 4456.7 4521.8 4103.6 10893 1 1 1 1 1 1 1 1 1 1 2206 1370 1936 2044 2466 2466 2483 ISDYFEYQGGNGSSPVR 17 Phospho (STY) _ISDYFEYQGGNGSS(ph)PVR_ ISDYFEYQGGNGS(0.12)S(0.88)PVR IS(-144.89)DY(-154.19)FEY(-132.64)QGGNGS(-8.64)S(8.64)PVR 0 0 1 0 Q9UKI8 Q9UKI8 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.000061035156 3 652.610555 1954.80984 37255.8595679535 1.675 0.0010931 117050 76.388 117050 76.389 728.998221166344 80.811 0.61437 80.811 80.491 81.105 1.4211E-14 74 20 5 0.896353959341208 0.00447594387718953 0.0595167526577999 9.8335E-11 1 18899 183.15 163.57 5 38824000 5036.4 6156.5 5706.9 5399.7 5045.4 5511.7 5785 5832.9 7013.1 10930 4768.2 5811.5 5701.2 5592.2 5170.8 5544.3 5886.7 6167.7 6867.7 10427 1 1 1 1 1 1 1 1 1 1 2207 2172 1937 2045 2467 2467 3913 ISEGLPTPTK 10 Phospho (STY) _ISEGLPT(ph)PTK_ ISEGLPT(0.883)PT(0.117)K IS(-42.74)EGLPT(8.78)PT(-8.78)K 0 0 1 0 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 527.629211425781 3 374.852928 1121.53696 41645.0068238139 1.4886 0.00055802 407560 152.78 407560 152.78 527.628727165893 66.325 0.79388 66.325 65.926 66.72 0 88 26 5 0.864294314910666 0.00881749139138274 0.148326951908274 0.016846 1 15585 67.118 40.389 3 47207000 20088 12958 19565 12925 6937.9 16050 7144.2 15417 10890 1097.1 19007 12240 19576 13323 7792.6 15943 7364.8 15522 10586 1389.8 1 1 1 1 1 1 1 1 1 1 2208 310 1938 2046 2468 2468 4368 ISEGLPTPTKMTPR 14 Oxidation (M),Phospho (STY) _ISEGLPTPTKM(ox)T(ph)PR_ ISEGLPTPTKM(1)TPR ISEGLPT(0.001)PT(0.004)KMT(0.995)PR ISEGLPTPTKM(105.5)TPR IS(-72.14)EGLPT(-31.57)PT(-23.65)KMT(23.65)PR 0 1 1 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.708923339844 3 541.931913 1622.77391 37830.4219803198 1.4764 0.0008001 281910 152.78 281910 152.78 694.707127297264 60.729 0.87316 60.729 60.282 61.155 0 122 29 6 0.968214584845872 0.00536010466345242 0.105448490659461 0.00016924 2 14194 105.5 72.617 4 104210000 63826 21195 60044 24534 24011 65298 24808 37112 26181 13461 60381 20041 60238 25642 26507 63304 25252 38724 25775 13534 2 2 2 2 2 2 2 2 2 2 2209 310 1939 2047 2469;2470 2469 30 4368;4369 ISEGLPTPTKMTPR 14 Phospho (STY) _ISEGLPTPTKMT(ph)PR_ ISEGLPTPTKMT(1)PR IS(-103.39)EGLPT(-46.11)PT(-33.29)KMT(33.29)PR 0 0 1 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.376831054688 3 536.600274 1606.77899 37809.8043020817 1.972 0.0010582 284710 152.78 284710 152.78 689.375468752288 67.927 0.88651 67.927 67.502 68.388 0 126 29 6 0.878940042839577 0.00508390762943268 0.11471649410338 1.4599E-06 1 15896 152.01 119.86 4 203730000 27407 10103 27662 9686.7 10688 24389 9463 15899 11359 5328.5 25935 9541.7 27629 10208 11833 23694 9743.3 16437 11128 5385.3 1 1 1 1 1 1 1 1 1 1 2210 310 1939 2048 2471 2471 4368;4369 ISEGLPTPTKMTPR 14 2 Phospho (STY) _ISEGLPT(ph)PTKMT(ph)PR_ IS(0.002)EGLPT(0.943)PT(0.055)KMT(1)PR IS(-26.57)EGLPT(12.33)PT(-12.33)KMT(58.19)PR 0 0 2 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.032043457031 3 563.255718 1686.74532 36586.5843798598 1.9277 0.0010858 271240 152.78 271240 152.78 716.365459902222 69.71 1.5331 69.71 68.884 70.417 -1.4211E-14 197 52 5 0.97379661572894 0.018967928073788 0.754276025774046 5.6997E-05 1 16337 129.02 106.78 6 135870000 56262 22446 61507 20549 7664.7 51948 7779.8 27559 21836 9348.8 53258 21193 60973 21720 10972 50381 8298.5 28870 20949 9440.9 1 1 1 1 1 1 1 1 1 1 2211 310 1939 2049 2472 2472 4368;4369 ISFVEEDVHPK 11 Phospho (STY) _IS(ph)FVEEDVHPK_ IS(1)FVEEDVHPK IS(206.66)FVEEDVHPK 0 0 1 0 Q8WYP5 Q8WYP5 Q8WYP5 AHCTF1 Protein ELYS MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.322570800781 3 460.546276 1378.617 39934.5762744436 2.105 0.00096944 331730 152.78 331730 152.78 613.321553465137 81.717 0.80973 81.717 81.363 82.173 0 105 27 5 0.990719512998396 0.00563863979534442 0.053278754122677 6.9921E-11 1 19090 206.66 174.27 1 120300000 15373 15183 14601 14844 14872 14630 11858 14194 17532 11191 14544 14341 14744 15259 15039 14690 12371 14592 17058 10866 1 1 1 1 1 1 1 1 1 1 2212 1585 1940 2050 2473 2473 2912 ISLPGQMAGTPITPLK 16 Phospho (STY) _ISLPGQMAGT(ph)PITPLK_ ISLPGQMAGT(1)PITPLK IS(-62.63)LPGQMAGT(34.4)PIT(-34.4)PLK 0 0 1 0 Q9H8Y8 Q9H8Y8 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.743225097656 3 568.631575 1702.87289 37689.5070573971 2.1242 0.0012079 268670 152.78 268670 152.78 721.74162917587 96.784 0.49094 96.784 96.519 97.01 0 36 16 3 0.926219789672336 0.00230353582464425 0.0147499827836917 0.00012971 1 22489 115.42 96.823 3 4664100 2713.8 4114.6 2729.3 3964 6430.7 2596.2 6000.7 4732.2 4173.4 12608 2568 3886.1 2791.9 4057.3 6299.5 2713.9 6078.8 5043.8 4195.4 11982 1 1 1 1 1 1 1 1 1 1 2213 1964 1941 2051 2474 2474 4770 ISLPLPNFSSLNLR 14 Phospho (STY) _ISLPLPNFSS(ph)LNLR_ ISLPLPNFS(0.001)S(0.999)LNLR IS(-124.09)LPLPNFS(-30.32)S(30.32)LNLR 0 0 1 0 P08670 P08670 P08670 VIM Vimentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.016967773438 2 825.93438 1649.85421 32587.9004631705 1.4987 0.0012378 138730 114.58 138730 114.58 940.515525583827 102.05 0.17375 102.05 101.99 102.16 0 16 5 4 0.944511855493283 0.00309338600786923 0.092620033941084 2.2655E-10 1 24035 188.63 158.06 3 41779000 15712 14961 16963 14531 20881 18612 22451 20939 17730 75799 14873 14131 17060 15012 20976 18645 22648 23197 17694 71859 1 1 1 1 1 1 1 1 1 1 2214 336 1942 2052 2475 2475 550 ISLSKSPTK 9 Phospho (STY) _ISLSKS(ph)PTK_ IS(0.001)LS(0.022)KS(0.93)PT(0.046)K IS(-31.2)LS(-16.17)KS(13.02)PT(-13.02)K 0 0 1 1 Q5BKZ1 Q5BKZ1 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 576.681274414063 3 347.517769 1039.53148 41308.8574078397 1.7769 0.0006175 659430 229.16 659430 229.16 576.680721464918 60.811 0.63573 60.811 60.489 61.124 7.1054E-15 79 21 5 0.892246834174312 0.00332529375825143 0.0421833825785114 0.01452 1 14213 61.532 34.874 4 274010000 7131.9 27860 7325.9 27494 24570 8023.3 26624 20013 27589 4689.5 6749.3 26316 7580.6 27940 23946 9070.4 27028 19751 27181 4878.9 1 1 1 1 1 1 1 1 1 1 2215 1160 1943 2053 2476 2476 2009 ISMQDVDLSLGSPK 14 Oxidation (M),2 Phospho (STY) _IS(ph)M(ox)QDVDLS(ph)LGSPK_ ISM(1)QDVDLSLGSPK IS(1)MQDVDLS(0.5)LGS(0.5)PK ISM(41.09)QDVDLSLGSPK IS(36.78)MQDVDLS(0)LGS(0)PK 0 1 2 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.00830078125 3 555.8996 1664.67697 37150.0940930971 1.8306 0.0010176 274820 152.77 274820 152.77 709.007696861644 99.555 0.45744 99.555 99.322 99.78 0 58 15 6 0.973245303093319 0.0151015760328227 0.358033229436629 0.046259 1 23119 41.092 20.428 3 263790000 13708 10032 13048 8357.5 17885 15061 18314 13567 10302 16894 12969 9467.8 13237 8791.1 17863 14810 18402 14175 10504 16222 1 1 1 1 1 1 1 1 1 1 2216 896 1944 2054 2477 2477 121 1469;1470;1471 ISMQDVDLSLGSPK 14 2 Phospho (STY) _IS(ph)MQDVDLS(ph)LGSPK_ IS(1)MQDVDLS(0.5)LGS(0.5)PK IS(45.38)MQDVDLS(0)LGS(0)PK 0 0 2 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.676086425781 3 550.567962 1648.68206 36666.0687407861 1.6598 0.00091385 277480 152.77 277480 152.77 703.675982586909 100.91 0.34698 100.91 100.78 101.13 0 39 11 7 0.993547890054212 0.131519948089552 1 0.049017 1 23652 49.929 32.19 3 1276800000 174510 86119 175300 67087 212310 182770 234640 166110 93220 39047 165140 81245 176970 71903 213450 177900 233900 168440 97978 40612 1 1 1 1 1 1 1 1 1 1 2217 896 1944 2055 2478 2478 1469;1470;1471 ISNLSPEEEQGLWK 14 Phospho (STY) _ISNLS(ph)PEEEQGLWK_ IS(0.055)NLS(0.945)PEEEQGLWK IS(-12.36)NLS(12.36)PEEEQGLWK 0 0 1 0 Q5HYJ3 Q5HYJ3 Q5HYJ3 FAM76B Protein FAM76B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.370300292969 3 570.597587 1708.77093 36857.1446513738 1.8623 0.0010626 267750 152.78 267750 152.78 723.37287807253 89.531 0.84203 89.531 89.172 90.014 0 104 28 6 0.849090099777596 0.0018102297167299 0.011235691507798 1.9432E-10 1 20835 177.91 99.836 2 55392000 12600 11231 13427 10257 12697 12335 12503 11406 11299 9520.3 11926 10604 13463 10624 12924 12277 12704 11764 11200 9228.5 1 1 1 1 1 1 1 1 1 1 2218 1164 1945 2056 2479 2479 2014 ISNLSPEEEQGLWK 14 Phospho (STY) _ISNLS(ph)PEEEQGLWK_ ISNLS(1)PEEEQGLWK IS(-42.82)NLS(42.82)PEEEQGLWK 0 0 1 0 Q5HYJ3 Q5HYJ3 Q5HYJ3 FAM76B Protein FAM76B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1085.05676269531 2 855.392742 1708.77093 30985.5830506668 1.6072 0.0013748 267910 229.16 267910 229.17 1085.06039491281 89.511 0.57725 89.511 89.263 89.841 0 38 19 3 0.985610705895615 0.000409884330522652 0.00423906533748665 2.4142E-10 1 20887 187 154.94 2 12404000 9799.1 7197.4 10233 9296.6 9086.7 9902.1 9698.7 10894 8013.1 40735 9274.1 6811.1 10267 9427.1 9296 9987.5 9796.9 12116 7978 38609 1 1 1 1 1 1 1 1 1 1 2219 1164 1945 2056 2480 2480 2014 ISPDLNIK 8 Phospho (STY) _IS(ph)PDLNIK_ IS(1)PDLNIK IS(70.49)PDLNIK 0 0 1 0 Q69YH5 Q69YH5 Q69YH5 CDCA2 Cell division cycle-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.410583496094 2 490.246633 978.478713 38552.4165379584 2.3431 0.0011487 467440 229.16 467450 229.16 719.409429094612 78.777 0.5239 78.777 78.432 78.956 0 28 17 2 0.869856171159531 0.000841261683268555 0.021014793877676 0.018554 1 18458 70.488 11.063 1 9414800 14437 17173 13977 17126 10159 12877 11548 13903 19396 21960 13659 16223 14057 17519 10562 13151 11903 14568 18806 21000 1 1 1 1 1 1 1 1 1 1 2220 1231 1946 2057 2481 2481 2174 ISPIQKPQGLDPVEILQER 19 Phospho (STY) _IS(ph)PIQKPQGLDPVEILQER_ IS(1)PIQKPQGLDPVEILQER IS(203.78)PIQKPQGLDPVEILQER 0 0 1 1 P51531 P51531 P51531 SMARCA2 Probable global transcription activator SNF2L2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 900.506591796875 3 747.394393 2239.16135 33801.296149478 1.9604 0.0014652 204410 152.77 204410 152.78 900.504013467875 98.777 0.43038 98.777 98.518 98.948 0 54 14 5 0.926772194476657 0.00707133652017711 0.102207560930878 1.7219E-11 1 22901 203.78 164.55 1 49296000 15756 20796 17468 19512 22013 18449 23573 23819 20762 60799 14915 19638 17550 20096 22090 18722 23843 25516 20605 57801 1 1 1 1 1 1 1 1 1 1 2221 678 1947 2058 2482 2482 1136 ISREPEPAAGPQAEESATVSAPAPMSPTR 29 Phospho (STY) _ISREPEPAAGPQAEESATVSAPAPMS(ph)PTR_ ISREPEPAAGPQAEESATVSAPAPMS(0.964)PT(0.036)R IS(-202.22)REPEPAAGPQAEES(-127.51)AT(-106.22)VS(-84.08)APAPMS(14.29)PT(-14.29)R 0 0 1 1 Q9BWG6 Q9BWG6 Q9BWG6 SCNM1 Sodium channel modifier 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1082.19421386719 3 1005.46902 3013.38523 30009.9649646703 1.5266 0.001535 75973 76.388 75974 76.39 1082.19102670924 56.852 0.34936 56.852 56.664 57.014 0 29 11 4 0.958142213444234 0.00131573241647762 0.00717892210369464 2.4745E-25 1 13299 251.68 227.89 6 14125000 8902 13045 10236 12520 8742.1 8839.9 7247.6 9572.1 14246 9699.1 8428.6 12320 10209 12828 8945.2 9052.4 7640.9 9865.4 13760 9354.4 1 1 1 1 1 1 1 1 1 1 2222 1852 1948 2059 2483 2483 3386 ISRPGDSDDSR 11 Unmodified _ISRPGDSDDSR_ 0 0 0 1 P14866 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 478.577911376953 3 402.189941 1203.54799 NaN NaN NaN NaN NaN NaN NaN NaN 26.934 1 26.934 26.434 27.434 0 NaN NaN NaN 0.00026375 1 6003 123.26 85.528 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2223 391 1949 2060 2484 2484 ISSKSPGHMVILDQTK 16 Phospho (STY) _IS(ph)SKSPGHMVILDQTK_ IS(0.451)S(0.361)KS(0.188)PGHMVILDQTK IS(0.97)S(-0.97)KS(-3.81)PGHMVILDQT(-53.46)K 0 0 1 1 Q9NWH9 Q9NWH9 Q9NWH9 SLTM SAFB-like transcription modulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.135803222656 3 607.637388 1819.89034 34954.1591556957 2.1734 0.0013206 377140 229.16 377140 229.16 837.135375207117 69.143 0.49035 69.143 68.884 69.374 1.4211E-14 47 16 4 0.912534864725216 0.00123168486202561 0.0116941651944247 3.132E-05 1 16209 129.85 108.65 4 14980000 12039 17539 9989.9 16774 11336 14746 27713 25001 18856 17134 11384 16564 10224 17237 11648 15032 27180 25197 18981 16712 1 1 1 1 1 1 1 1 1 1 2224 2054 1950 2061 2485 2485 3718;3719 ISSSSFSR 8 Phospho (STY) _ISSSS(ph)FSR_ IS(0.001)S(0.018)S(0.059)S(0.461)FS(0.461)R IS(-25.65)S(-13.98)S(-8.93)S(0)FS(0)R 0 0 1 0 CON__P05787;P05787 CON__P05787 CON__P05787 KRT8 Keratin, type II cytoskeletal 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.283935546875 2 475.70259 949.390626 40364.1430515511 1.3012 0.00061897 240870 114.58 240870 114.58 590.283959880261 46.64 0.74643 46.64 46.376 47.122 -7.1054E-15 65 25 4 0.99857212020264 0.00372774020285085 0.0346061994033701 0.011475 1 10746 83.358 15.477 5 120840000 10951 56249 12595 51951 12978 10601 13835 28690 58877 3319.8 10369 53112 12595 52940 13203 12705 15275 28177 56183 3790 1 1 1 1 1 1 1 1 1 1 + 2225 24 1951 2062 2486 2486 39;40;41 ISSSSFSR 8 Phospho (STY) _IS(ph)SSSFSR_ IS(0.979)S(0.019)S(0.001)SFSR IS(17.1)S(-17.1)S(-28.36)S(-56.21)FS(-103.75)R 0 0 1 0 CON__P05787;P05787 CON__P05787 CON__P05787 KRT8 Keratin, type II cytoskeletal 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.284362792969 2 475.70259 949.390626 40809.1294524031 1.0612 0.00050479 240870 114.58 240870 114.58 590.283730656444 52.192 0.54176 52.192 51.921 52.463 0 42 18 3 0.997824118180598 0.00174215914944559 0.0215593290056888 2.8607E-05 1 12139 144.47 32.865 5 33393000 11612 44385 9779.3 45333 8757.7 8577.6 8407 20283 50830 3530.2 10981 41935 9939.4 45898 8982.7 10392 9736.2 19998 48355 3793.6 1 1 1 1 1 1 1 1 1 1 + 2226 24 1951 2062 2487 2487 39;40;41 ISSTLYQAAAPVLTPAK 17 Phospho (STY) _ISSTLYQAAAPVLT(ph)PAK_ ISSTLYQAAAPVLT(1)PAK IS(-109.2)S(-109.44)T(-109.67)LY(-100.58)QAAAPVLT(100.58)PAK 0 0 1 0 Q8N6L1 Q8N6L1 Q8N6L1 KRTCAP2 Keratinocyte-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.091125488281 3 604.316532 1809.92777 36436.5935302768 1.5416 0.00093161 252810 152.78 252810 152.78 757.426148910044 89.209 0.4387 89.209 88.967 89.406 -1.4211E-14 46 14 4 0.987559288199119 0.00292338852406947 0.0969764734738645 8.1733E-05 1 20784 119.16 100.41 5 17729000 5273.4 5656.9 5697.6 6108.5 3844.2 5093.1 4033.4 5755.2 6963.9 14140 4991.6 5346.4 5690.4 6228.1 4016 5185.3 4176.8 6173.3 6747 13447 1 1 1 1 1 1 1 1 1 1 2227 1480 1952 2063 2488 2488 4681 ISSVPNSLSK 10 Phospho (STY) _ISS(ph)VPNSLSK_ IS(0.228)S(0.772)VPNSLSK IS(-5.29)S(5.29)VPNS(-41.34)LS(-45.18)K 0 0 1 0 Q5VZ89 Q5VZ89 Q5VZ89 DENND4C DENN domain-containing protein 4C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.438293457031 2 556.273379 1110.5322 35842.6208889505 2.1348 0.0011876 411960 229.16 411960 229.16 785.436194279067 66.976 0.49109 66.976 66.747 67.238 0 50 16 4 0.729826581058505 0.00231488051862785 0.099458663868978 0.00030328 1 15717 113.61 45.178 4 26590000 27840 27145 26178 24926 18615 29495 19750 25010 29186 19281 26337 25630 26365 25802 19362 29341 20308 25842 28398 18734 1 1 1 1 1 1 1 1 1 1 2228 1214 1953 2064 2489 2489 2132 ISTASQVSQGTGSPVPK 17 Phospho (STY) _ISTASQVSQGTGS(ph)PVPK_ ISTASQVSQGT(0.033)GS(0.967)PVPK IS(-118.68)T(-113.43)AS(-101.02)QVS(-76.67)QGT(-14.6)GS(14.6)PVPK 0 0 1 0 Q9ULM3 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.055847167969 3 575.280258 1722.81894 35987.853138882 1.8157 0.0010445 265570 152.78 265570 152.78 728.389819331202 56.347 0.47599 56.347 56.096 56.572 0 43 15 4 0.756613581220307 0.0023474280510251 0.041127079651364 3.1143E-07 1 13148 148.52 134.27 6 25341000 16136 22274 16349 16812 15403 16830 16751 18789 21440 11499 15269 21010 16441 17596 15711 16915 17115 19117 20956 11262 1 1 1 1 1 1 1 1 1 1 2229 2187 1954 2065 2490 2490 3955 ISTVAVQSVNAGAPLITSTSPTTATSPK 28 Phospho (STY) _ISTVAVQSVNAGAPLITS(ph)TSPTTATSPK_ ISTVAVQSVNAGAPLIT(0.073)S(0.33)T(0.252)S(0.252)PT(0.073)T(0.017)AT(0.004)SPK IS(-70.55)T(-71.63)VAVQS(-51.52)VNAGAPLIT(-6.56)S(1.18)T(-1.18)S(-1.18)PT(-6.56)T(-13)AT(-19.32)S(-28.36)PK 0 0 1 0 Q15723 Q15723 Q15723 ELF2 ETS-related transcription factor Elf-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 810.437255859375 4 695.608581 2778.40522 35142.3032833765 1.8312 0.0012738 164720 114.58 164720 114.58 810.439306825991 87.164 0.29509 87.164 86.968 87.263 0 29 9 4 0.890111134988472 0.00168535727717211 0.0206136712060812 0.0041494 1 20363 89.773 67.46 11 17361000 5813.4 8255 6594.9 8536.1 7627.5 6729.5 9293.8 7829.3 10077 13810 5503.9 7799.9 6611.6 8718.4 7703.7 6865.8 9401.7 8226.8 9909.5 13185 1 1 1 1 1 1 1 1 1 1 2230 1090 1955 2066 2491 2491 1891 ISVGGLPVLASMTK 14 Phospho (STY) _IS(ph)VGGLPVLASMTK_ IS(1)VGGLPVLASMTK IS(128.57)VGGLPVLAS(-128.57)MT(-168.06)K 0 0 1 0 Q8WVQ1 Q8WVQ1 Q8WVQ1 CANT1 Soluble calcium-activated nucleotidase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 637.69921875 3 484.922577 1451.7459 40090.1385096562 1.2857 0.00062348 315050 152.78 315050 152.78 637.697989859641 101.67 0.11905 101.67 101.58 101.7 0 7 3 3 0.941980909230294 0.00114794511249597 0.0239227095896805 8.8827E-11 1 23923 197.15 175.38 3 10782000 8230.5 9103.2 9040.7 8550.4 5033.7 9617.6 5819.3 8050.9 9867 10572 7791.2 8596.3 9009.3 8830.2 5359.7 9592.8 5996.6 8454.9 9564.1 10142 1 1 1 1 1 1 1 1 1 1 2231 1572 1956 2067 2492 2492 2884 ISYIPDEEVSSPSPPQR 17 Phospho (STY) _ISYIPDEEVSSPS(ph)PPQR_ ISYIPDEEVS(0.001)S(0.039)PS(0.96)PPQR IS(-89.74)Y(-90.11)IPDEEVS(-31.17)S(-13.94)PS(13.94)PPQR 0 0 1 0 Q9Y6M1 Q9Y6M1 Q9Y6M1 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.693420410156 3 660.969861 1979.88775 35722.8759871966 1.7597 0.0011631 115570 76.387 115570 76.389 737.691459831875 73.09 0.86485 73.09 72.663 73.528 0 84 29 4 0.919080461946277 0.00123028368112878 0.0224290965332545 8.6021E-05 1 17136 106.23 91.459 5 15408000 8074.1 6852.5 6988.9 6688.7 5641.7 7598.4 6990.6 6471.4 6798.3 8754 7636.1 6472.4 7085.8 6892.4 5823.7 7578 7045.8 6798.7 6716.1 8392.7 1 1 1 1 1 1 1 1 1 1 2232 2317 1957 2068 2493 2493 4272 ISYTPPESPVPSYASSTPLHVPVPR 25 Phospho (STY) _ISYT(ph)PPESPVPSYASSTPLHVPVPR_ IS(0.017)YT(0.982)PPESPVPSYASSTPLHVPVPR IS(-17.49)Y(-47.31)T(17.49)PPES(-51.17)PVPS(-109.25)Y(-118.95)AS(-125.32)S(-127.68)T(-132.96)PLHVPVPR 0 0 1 0 P41212 P41212 P41212 ETV6 Transcription factor ETV6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 996.512817382813 3 920.121109 2757.3415 31602.8977809967 0.95522 0.00087892 83021 76.39 83022 76.391 996.84482701976 88.071 0.57794 88.071 87.704 88.282 -1.4211E-14 62 19 4 0.945952883964382 0.00155031542982117 0.0478880949932473 2.7869E-08 2 20508 171.31 156.69 9 11861000 5059.4 5152.5 6047.8 5500.1 6730 5496.3 10644 8621.9 5315.7 48050 4791.2 4869.4 6048.7 5626.1 6839.7 5639 10500 9975.1 5471 45444 2 2 2 2 2 2 2 2 2 2 2233 577 1958 2069 2494;2495 2495 4458 ITAHSSPPLTK 11 Phospho (STY) _ITAHSS(ph)PPLTK_ IT(0.001)AHS(0.028)S(0.971)PPLTK IT(-31.97)AHS(-15.39)S(15.39)PPLT(-64.15)K 0 0 1 0 Q15652 Q15652 Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.982727050781 3 411.207594 1230.60095 41414.5045448351 0.60888 0.00025038 371530 152.78 371530 152.78 563.98269304957 51.909 0.63389 51.909 51.66 52.294 0 66 21 4 0.796612020911574 0.00348471471475631 0.0119273611658241 0.0014524 1 12059 97.297 67.487 4 61824000 23892 10707 24252 11594 11330 23649 13807 13491 12128 2933.4 22610 10119 24246 12044 12294 23045 13890 14015 12038 3074.3 1 1 1 1 1 1 1 1 1 1 2234 1086 1959 2070 2496 2496 1883 ITGSVGK 7 Phospho (STY) _ITGS(ph)VGK_ IT(0.198)GS(0.802)VGK IT(-6.08)GS(6.08)VGK 0 0 1 0 Q709C8 Q709C8 Q709C8 VPS13C Vacuolar protein sorting-associated protein 13C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 600.344116210938 2 371.180762 740.34697 40865.7723110516 0.96356 0.00035765 617390 229.16 617390 229.16 600.343630123672 51.629 0.25855 51.629 51.431 51.69 0 13 8 2 0.878415768050586 0.00065038762261232 0.00724439591417255 0.049555 1 12015 51.445 17.133 2 11211000 19165 14535 20784 16427 20341 21513 20503 18806 15929 4628.6 18141 13742 20830 16833 20666 21311 20738 19109 15911 4793.6 1 1 1 1 1 1 1 1 1 1 2235 1306 1960 2071 2497 2497 2331 ITHSPDSVK 9 Phospho (STY) _ITHS(ph)PDSVK_ IT(0.002)HS(0.994)PDS(0.004)VK IT(-26.74)HS(23.67)PDS(-23.67)VK 0 0 1 0 Q15652 Q15652 Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 507.941375732422 3 355.165506 1062.47469 44777.350225174 1.3058 0.00046376 430150 152.78 430150 152.78 507.94066598906 41.817 0.59586 41.817 41.54 42.136 0 40 20 3 0.857298865001627 0.00175916153142474 0.014729144955305 0.00041096 1 9534 101.35 70.785 3 24478000 23473 16215 22215 15010 10722 22474 13559 18255 15627 3643.2 22206 15311 22306 15605 11601 22147 13722 18584 15332 3853 1 1 1 1 1 1 1 1 1 1 2236 1086 1961 2072 2498 2498 1884 ITHSPTVSQVTER 13 Phospho (STY) _ITHS(ph)PTVSQVTER_ ITHS(0.978)PT(0.022)VSQVTER IT(-54.44)HS(16.53)PT(-16.53)VS(-56.51)QVT(-87.39)ER 0 0 1 0 P16157 P16157 P16157 ANK1 Ankyrin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.450134277344 2 767.866695 1533.71884 33304.2600235097 1.6628 0.0012768 149220 114.58 149220 114.58 882.448722855016 43.319 0.37481 43.319 43.09 43.465 0 31 12 3 0.979660675885736 0.00090674455835326 0.0177622752605367 1.0665E-15 1 9893 220.32 187.24 5 24798000 8203.7 21909 7690.3 18774 18914 10009 21526 19019 21991 4608.5 7760.9 20679 7915.5 19327 18569 10545 21799 18867 21679 4779.6 1 1 1 1 1 1 1 1 1 1 2237 404 1962 2073 2499 2499 646 ITIADCGQLE 10 Unmodified _ITIADCGQLE_ 0 0 0 0 P62937 P62937 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.853149414063 2 560.271164 1118.52777 38056.8902636238 2.171 0.0012163 204510 114.58 204510 114.58 674.852582265974 75.07 0.51681 75.07 74.797 75.314 1.4211E-14 40 17 3 0.991715683295625 0.00153061726804356 0.0216343330234688 0.0013473 1 17605 103.83 78.274 1 17770000 5658.2 6431.5 5425.4 7275.5 7647.5 7726.4 7964.9 6703.7 7203.3 7076.7 5353.2 6080.4 5504.2 7426 7633.3 7724.9 8071.4 6977.2 7139.8 6818.7 1 1 1 1 1 1 1 1 1 1 2238 774 1963 2074 2500 2500 ITKPGSIDSNNQLFAPGGR 19 Phospho (STY) _ITKPGS(ph)IDSNNQLFAPGGR_ IT(0.068)KPGS(0.93)IDS(0.002)NNQLFAPGGR IT(-11.36)KPGS(11.36)IDS(-26.84)NNQLFAPGGR 0 0 1 1 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.780517578125 3 684.668516 2050.98372 34732.1974625785 2.3715 0.0016237 223140 152.78 223140 152.78 837.778209346129 73.871 0.42447 73.871 73.645 74.07 0 32 14 3 0.817052679708184 0.00101887998881517 0.0114528780573108 0.0071972 1 17376 81.888 59.667 3 16891000 10035 9498.4 9522.9 9805 7610.8 9992.5 7954.2 9799.7 10468 17166 9494 8974.5 9595.7 10052 7843.6 10038 8149 10355 10222 16391 1 1 1 1 1 1 1 1 1 1 2239 861 1964 2075 2501 2501 1394 ITPHTSPAPR 10 Phospho (STY) _ITPHT(ph)SPAPR_ ITPHT(0.734)S(0.266)PAPR IT(-57.32)PHT(4.4)S(-4.4)PAPR 0 0 1 0 Q58A45 Q58A45 Q58A45 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 462.577056884766 3 386.188534 1155.54377 45357.715861688 0.38334 0.00014804 197800 76.388 197800 76.388 462.576599402138 33.673 0.63884 33.673 33.384 34.022 0 50 21 3 0.574538644918279 0.00358771662311258 0.0544929459044891 1.2873E-05 1 7536 137.88 122.26 3 17196000 20883 13622 23049 14436 13137 21222 13978 16883 13510 1656.8 19769 12873 22965 14882 13928 20918 14175 17152 13350 1950.8 1 1 1 1 1 1 1 1 1 1 2240 1158 1965 2076 2502 2502 4596 ITPLEIEVLEETVQTMDTS 19 Oxidation (M) _ITPLEIEVLEETVQTM(ox)DTS_ ITPLEIEVLEETVQTM(1)DTS ITPLEIEVLEETVQTM(135.09)DTS 0 1 0 0 Q99436 Q99436 Q99436 PSMB7 Proteasome subunit beta type-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.746704101563 3 722.024092 2163.05045 34540.8435906775 1.5297 0.0011045 105800 76.387 105800 76.388 798.411988559639 102.02 0.14224 102.02 101.93 102.07 0 14 4 5 0.976292667449113 0.0173377823663944 0.162560649040377 6.4196E-06 1 24027 135.09 125.3 1 90409000 5715.6 7937.7 5066.1 6574.7 4045.2 6850.9 5693.3 6976.9 7123.4 28724 5405.9 7490.7 5129.2 6838.4 4190 6910.3 5755.3 7858.9 6968 27208 1 1 1 1 1 1 1 1 1 1 2241 1762 1966 2077 2503 2503 203 ITPLEIEVLEETVQTMDTS 19 Unmodified _ITPLEIEVLEETVQTMDTS_ 0 0 0 0 Q99436 Q99436 Q99436 PSMB7 Proteasome subunit beta type-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.415649414063 3 716.692454 2147.05553 34889.2833462672 1.7366 0.0012446 106580 76.388 106590 76.389 793.414338737896 103.51 0.16856 103.51 103.43 103.6 0 23 5 6 0.993356541896722 0.0686579750794389 0.281397631900305 1.9134E-11 1 24393 203.99 193.71 1 212950000 3216.5 4650.7 3043 4385.6 3763.3 3573.4 4040.5 4204.4 5711.5 7073.4 3043 4391.9 3083.4 4506.2 3782 3639.3 4145.4 4406 5564.7 6757.8 1 1 1 1 1 1 1 1 1 1 2242 1762 1966 2078 2504 2504 ITPPAAKPGSPQAK 14 Phospho (STY) _ITPPAAKPGS(ph)PQAK_ ITPPAAKPGS(1)PQAK IT(-91.93)PPAAKPGS(91.93)PQAK 0 0 1 1 P35658 P35658 P35658 NUP214 Nuclear pore complex protein Nup214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.564208984375 4 361.440534 1441.73303 42821.1952534733 0.75731 0.00027372 475520 171.87 475520 171.87 533.563408269215 54.348 0.78087 54.348 53.859 54.639 0 97 26 5 0.690447503307583 0.00238736026228429 0.0308415032296285 1.0878E-06 1 12612 139.02 108.47 2 80549000 8248.8 13437 8449.1 13310 6103.7 9585.9 5500.8 9997.1 14804 1029.6 7806.2 12693 8466.4 13614 6332.8 9781.7 5883.1 10043 14213 1200.9 1 1 1 1 1 1 1 1 1 1 2243 551 1967 2079 2505 2505 894 ITPVTVK 7 Phospho (STY) _IT(ph)PVTVK_ IT(0.998)PVT(0.002)VK IT(26.9)PVT(-26.9)VK 0 0 1 0 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.390869140625 2 419.227712 836.440871 39295.6033002472 2.2872 0.00095885 546630 229.16 546630 229.16 648.388742697819 65.036 0.75055 65.036 64.593 65.343 0 50 25 3 0.839015689334025 0.00188049793438552 0.0381856521174203 0.028016 1 15269 66.962 17.426 2 24132000 14531 28604 14213 33179 23638 15598 21298 22580 32055 5280.8 13749 27048 14441 33505 23408 16517 22087 22538 31172 5495.1 1 1 1 1 1 1 1 1 1 1 2244 1035 1968 2080 2506 2506 4563 ITSPLMEPSSIEK 13 Phospho (STY) _ITS(ph)PLMEPSSIEK_ IT(0.007)S(0.993)PLMEPSSIEK IT(-21.84)S(21.84)PLMEPS(-114.57)S(-121.78)IEK 0 0 1 0 P28066 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 985.52001953125 2 756.356783 1510.69901 32689.5015184502 1.8505 0.0013997 302980 229.16 302990 229.17 985.520823822679 83.812 0.40024 83.812 83.615 84.015 0 23 13 2 0.951268603034576 0.00126212505857551 0.0379723248635039 7.8548E-16 1 19593 228.33 178.05 4 10887000 8809.1 13162 10116 12707 7623.7 8796.5 7815.3 12122 12952 17999 8340.6 12431 10081 13012 7891.3 9067.3 8086.8 12573 12562 17229 1 1 1 1 1 1 1 1 1 1 2245 493 1969 2081 2507 2507 818 ITSVSTGNLCTEEQTPPPRPEAYPIPTQTYTR 32 Phospho (STY) _ITSVS(ph)TGNLCTEEQTPPPRPEAYPIPTQTYTR_ IT(0.003)S(0.015)VS(0.491)T(0.491)GNLCTEEQTPPPRPEAYPIPTQTYTR IT(-22.16)S(-15.13)VS(0)T(0)GNLCT(-30.62)EEQT(-86.33)PPPRPEAY(-160.3)PIPT(-143.12)QT(-147.51)Y(-172.42)T(-147.51)R 0 0 1 1 P55196 P55196 P55196 MLLT4 Afadin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.730834960938 4 921.936741 3683.71786 31848.7131319154 1.2954 0.0011943 62142 57.291 62144 57.293 979.47956046799 75.602 0.57646 75.602 75.314 75.891 -1.4211E-14 50 19 5 0.48091602902624 0.000563591794078669 0.011351050846569 5.099E-12 1 17790 191.21 158.41 11 9243900 1962.1 2053.9 1741.6 2371.3 3037 1905.4 1891.1 2146.3 2971.5 13903 1855.8 1942.1 1780.1 2408 2990.2 1959.9 2009.6 2562.4 2886.2 13141 1 1 1 1 1 1 1 1 1 1 2246 720 1970 2082 2508 2508 1197;4483 ITVNGDSSAEAEELANEI 18 Unmodified _ITVNGDSSAEAEELANEI_ 0 0 0 0 Q9BXJ9 Q9BXJ9 Q9BXJ9 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.680480957031 3 621.29357 1860.85888 38851.6796387024 1.8869 0.0011723 122950 76.387 122950 76.388 698.015132254476 92.31 0.37008 92.31 92.084 92.454 0 21 12 2 0.517379467809085 0.00107169757927371 0.0413711080166254 0.0049695 1 21516 89.468 68.805 1 6994800 4542.5 5021.7 5224.4 3880.8 5679.8 5322.5 5967.8 5768.9 5135.2 9316.9 4300.9 4737.3 5227.5 4077.5 5740.3 5293.8 6038.1 6050.1 5102.2 8906.5 1 1 1 1 1 1 1 1 1 1 2247 1862 1971 2083 2509 2509 ITVNGDSSAEAEELANEI 18 Phospho (STY) _ITVNGDSS(ph)AEAEELANEI_ ITVNGDS(0.219)S(0.781)AEAEELANEI IT(-45.35)VNGDS(-5.52)S(5.52)AEAEELANEI 0 0 1 0 Q9BXJ9 Q9BXJ9 Q9BXJ9 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1086.0048828125 2 971.419882 1940.82521 29469.8106423606 1.6094 0.0015634 117950 114.58 117950 114.58 1086.50248550641 97.158 0.86485 97.158 96.866 97.731 0 68 29 4 0.966519956475402 0.00123233649646612 0.0325181841416325 3.2104E-31 1 22542 308.42 274.11 3 14870000 2129 3426.5 2969 3684.4 2094 2148.5 2114.6 4137.8 3110 25974 2017.7 3238.4 2930.6 3742.7 2177.9 2296 2178.7 4856 3026.4 24554 1 1 1 1 1 1 1 1 1 1 2248 1862 1971 2084 2510 2510 3396 IVAHAVEVPAVQSPR 15 Phospho (STY) _IVAHAVEVPAVQS(ph)PR_ IVAHAVEVPAVQS(1)PR IVAHAVEVPAVQS(87.36)PR 0 0 1 0 Q96FF9 Q96FF9 Q96FF9 CDCA5 Sororin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.343872070313 3 551.622178 1651.84471 40013.858222832 1.7147 0.00094589 138480 76.387 138480 76.388 628.00973194787 64.018 0.81587 64.018 63.692 64.508 0 66 27 3 0.813017633545629 0.00138197113534416 0.0263668221511334 0.0052245 1 15025 87.356 68.07 1 11627000 6918.3 7963.7 6786.1 7883 6108.4 6981.4 6221.3 7580.3 9304.1 4453.4 6545.9 7522.6 6832.8 8084.4 6243.3 7053.9 6411.8 7714.6 9049.6 4368.9 1 1 1 1 1 1 1 1 1 1 2249 1677 1972 2085 2511 2511 3085 IVDSPEK 7 Phospho (STY) _IVDS(ph)PEK_ IVDS(1)PEK IVDS(112.75)PEK 0 0 1 0 Q9BZD4 Q9BZD4 Q9BZD4 NUF2 Kinetochore protein Nuf2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.360290527344 2 434.196609 866.378664 38762.2308776872 2.4257 0.0010532 527790 229.16 527790 229.16 663.360450272465 52.348 0.5692 52.348 52.127 52.697 0 40 19 3 0.534457507770801 0.00101988567158983 0.0338221912032551 0.0016702 1 12191 112.75 56.019 1 12182000 23002 37685 26133 33816 18470 26245 21504 29621 40477 11600 21778 35578 26047 34835 19257 26708 22263 29931 39134 11608 1 1 1 1 1 1 1 1 1 1 2250 1876 1973 2086 2512 2512 3415 IVDSPEKLK 9 Phospho (STY) _IVDS(ph)PEKLK_ IVDS(1)PEKLK IVDS(67.46)PEKLK 0 0 1 1 Q9BZD4 Q9BZD4 Q9BZD4 NUF2 Kinetochore protein Nuf2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.355895996094 3 370.193174 1107.55769 40881.2225221084 1.9679 0.00072851 619040 229.16 619040 229.16 599.356145993792 64.953 0.94778 64.953 64.684 65.631 0 85 32 4 0.793170949879722 0.000503190810286344 0.017674598552104 0.010387 1 15339 67.456 44.339 1 25328000 6253.6 8776.3 6858.6 8664 6815.1 6452.4 5552.6 7495.4 9720 2623.9 5919.8 8290 6868.5 8867.2 6904.6 6584.3 5826.8 7557.1 9414 2644.2 1 1 1 1 1 1 1 1 1 1 2251 1876 1974 2087 2513 2513 3415 IVEHQNLSK 9 Phospho (STY) _IVEHQNLS(ph)K_ IVEHQNLS(1)K IVEHQNLS(70.63)K 0 0 1 0 Q9H501 Q9H501 Q9H501 ESF1 ESF1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 535.96435546875 3 383.188423 1146.54344 43616.5266160707 0.31416 0.00012038 398690 152.77 398690 152.78 535.963512283504 47.595 0.36935 47.595 47.433 47.803 0 21 12 2 0.922153973332802 0.00124618842689873 0.0188323509261385 0.0095581 1 11044 70.628 48.997 1 19906000 20746 19117 18690 18377 15885 20082 16447 17303 18669 3525.6 19623 18055 18905 18941 16296 20025 16776 17570 18326 3720.2 1 1 1 1 1 1 1 1 1 1 2252 1942 1975 2088 2514 2514 3518 IVEYSPPSAPR 11 Phospho (STY) _IVEYSPPS(ph)APR_ IVEYS(0.349)PPS(0.651)APR IVEY(-39.18)S(-2.7)PPS(2.7)APR 0 0 1 0 O95696 O95696 O95696 BRD1 Bromodomain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.885986328125 2 648.30521 1294.59587 35822.609435508 1.6533 0.0010718 176740 114.58 176740 114.58 762.88571513817 64.356 1.333 64.356 63.894 65.226 0 96 45 3 0.791020077643021 0.00090735831857818 0.039505838334373 0.013457 2 15056 76.332 55.124 3 13000000 29695 32631 29250 34706 31604 33303 29433 31006 34912 21369 28098 30837 29504 35486 31907 33455 30215 31834 34215 20839 2 2 2 2 2 2 2 2 2 2 2253 257 1976 2089 2515;2516 2515 431 IVNHWASPELR 11 Phospho (STY) _IVNHWAS(ph)PELR_ IVNHWAS(1)PELR IVNHWAS(114.64)PELR 0 0 1 0 O15027 O15027 O15027 SEC16A Protein transport protein Sec16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 544.616516113281 3 467.89401 1400.6602 43146.4303256354 1.0595 0.00049574 163260 76.388 163260 76.388 544.281626500278 69.659 0.55811 69.659 69.374 69.932 0 52 18 4 0.980831575670995 0.00301505454929929 0.110977399346589 0.00011373 1 16335 114.64 85.3 1 12282000 6777.1 6579.9 5906.9 5954.5 6358.8 7330.6 6537.4 6598.8 7416.8 7818.9 6409.6 6212.2 6003.8 6174.1 6429.6 7291.9 6670 6883 7280.9 7515.1 1 1 1 1 1 1 1 1 1 1 2254 75 1977 2090 2517 2517 130 IVPQSQVPNPESPGK 15 Phospho (STY) _IVPQSQVPNPES(ph)PGK_ IVPQSQVPNPES(1)PGK IVPQS(-49.37)QVPNPES(49.37)PGK 0 0 1 0 Q9ULM3 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.046997070313 3 552.937944 1655.792 36592.33155308 1.3068 0.00072259 276290 152.77 276300 152.77 706.045296995517 65.734 1.0606 65.734 65.314 66.374 0 55 35 2 0.571487738835497 0.00426895243956782 0.0627431170794894 0.0090736 1 15449 76.704 58.437 2 23833000 10989 8680.7 13335 11181 12337 11595 11347 12155 12165 6660.9 10407 8214.6 13278 11334 12565 11623 11620 12371 11968 6553.3 1 1 1 1 1 1 1 1 1 1 2255 2187 1978 2091 2518 2518 3956 IVSAQSLAEDDVE 13 Unmodified _IVSAQSLAEDDVE_ 0 0 0 0 Q15388 Q15388 Q15388 TOMM20 Mitochondrial import receptor subunit TOM20 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.915771484375 2 688.333004 1374.65145 34731.6916083939 1.8053 0.0012427 166460 114.58 166460 114.58 802.914355676449 76.625 0.55379 76.625 76.387 76.941 0 67 18 5 0.998877663636994 0.0111460319354852 0.396542002994431 4.0137E-15 1 17983 215.06 199.49 1 110090000 18297 15647 14047 13980 12212 15196 13030 13330 13269 10671 17298 14772 14368 14475 12513 15174 13230 13765 13083 10357 1 1 1 1 1 1 1 1 1 1 2256 1072 1979 2092 2519 2519 IVSAQSLAEDDVE 13 Phospho (STY) _IVSAQS(ph)LAEDDVE_ IVS(0.004)AQS(0.996)LAEDDVE IVS(-23.57)AQS(23.57)LAEDDVE 0 0 1 0 Q15388 Q15388 Q15388 TOMM20 Mitochondrial import receptor subunit TOM20 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.403625488281 2 728.316169 1454.61779 33960.175584733 2.0636 0.0015029 157320 114.58 157330 114.58 842.89751539774 82.105 1.0334 82.105 81.593 82.626 0 109 35 5 0.832957648027437 0.00164893065368892 0.0664893561398423 0.0001369 1 19163 120.84 105.96 2 66630000 7216 7176.4 6006.8 7538.2 7360.8 7908.5 6637.1 7939.9 7603.9 24336 6823.6 6781.4 6133.2 7723.8 7380.5 7956.8 6817.2 8696.4 7461.8 23099 1 1 1 1 1 1 1 1 1 1 2257 1072 1979 2093 2520 2520 1854 IVSGSPISTPSPSPLPR 17 Phospho (STY) _IVSGS(ph)PISTPSPSPLPR_ IVS(0.064)GS(0.909)PIS(0.025)T(0.001)PSPSPLPR IVS(-11.5)GS(11.5)PIS(-15.54)T(-29.42)PS(-43.01)PS(-52.92)PLPR 0 0 1 0 Q9ULM3 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.692749023438 3 591.304515 1770.89172 38912.8174665175 1.4751 0.00087224 129190 76.388 129190 76.389 668.02692296489 76.095 0.58466 76.095 75.774 76.359 0 55 19 4 0.635738276342874 0.00176186562423811 0.0398236911901353 0.010592 1 17840 72.585 57.895 6 15924000 4672.8 5334.5 6469.7 5358 6112.5 5906.7 7264 6715.5 5068.1 4943.4 4428.4 5039.5 6409.1 5508.8 6238.3 5915.5 7278.7 6853.7 5093.9 4810.3 1 1 1 1 1 1 1 1 1 1 2258 2187 1980 2094 2521 2521 3957 IVSMGIR 7 Phospho (STY) _IVS(ph)MGIR_ IVS(1)MGIR IVS(77.92)MGIR 0 0 1 0 REV__Q7Z408 REV__Q7Z408 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.791687011719 2 428.211539 854.408525 42873.1940337996 1.435 0.00061446 267580 114.58 267580 114.58 542.791302945878 74.673 0.64276 74.673 74.33 74.973 0 58 21 4 0.786132432328023 0.00180285140167489 0.0543183818301342 0.01603 1 17508 77.923 20.875 1 26965000 5782.2 13592 5856.8 13008 3628.5 5278.9 3826.8 7688.9 13532 3527.2 5471.7 12837 5866.3 13268 3825.8 5673.2 4151.6 7725.4 12941 3499.3 1 1 1 1 1 1 1 1 1 1 + 2259 2337 1981 2095 2522 2522 4295 IWDPTPSHTPAGAATPGR 18 Phospho (STY) _IWDPTPSHT(ph)PAGAATPGR_ IWDPTPS(0.001)HT(0.999)PAGAATPGR IWDPT(-48.95)PS(-31.81)HT(31.81)PAGAAT(-40.08)PGR 0 0 1 0 O75533 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.351867675781 3 637.963152 1910.86763 37511.1548982981 2.148 0.0013704 119740 76.389 119740 76.39 714.352568685989 63.003 0.78782 63.003 62.615 63.403 0 78 26 4 0.780126982948129 0.00204825157829958 0.0350981942272192 1.2745E-05 1 14803 134.47 103.35 4 14597000 11878 13872 12641 13527 11919 15181 11614 14180 13338 24536 11243 13103 12675 13937 12135 15177 11884 15002 13087 23432 1 1 1 1 1 1 1 1 1 1 2260 190 1982 2096 2523 2523 4339 IYEDGDDDMKR 11 Unmodified _IYEDGDDDMKR_ 0 0 0 1 Q9HB71 Q9HB71 Q9HB71 CACYBP Calcyclin-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.97216796875 3 452.862725 1355.56634 41293.169500248 1.3113 0.00059384 337360 152.78 337360 152.78 605.638248360878 48.716 0.60522 48.716 48.594 49.199 0 45 20 3 0.969149117379546 0.00140606022077628 0.00906423487856185 0.013837 1 11324 74.392 58.139 1 28153000 18539 21690 20065 21134 15321 20624 17578 20261 21450 2811.2 17548 20486 20063 21725 15864 20696 17890 20422 21001 3116 1 1 1 1 1 1 1 1 1 1 2261 1977 1983 2097 2524 2524 IYHLPDAESDEDEDFKEQTR 20 Phospho (STY) _IYHLPDAES(ph)DEDEDFKEQTR_ IYHLPDAES(1)DEDEDFKEQTR IY(-128.3)HLPDAES(96.92)DEDEDFKEQT(-96.92)R 0 0 1 1 Q15019 Q15019 Q15019 SEPT2 Septin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.847229003906 4 630.016791 2516.03806 36834.6731915619 1.7217 0.0010847 181870 114.58 181870 114.58 744.848916299959 70.231 1.7033 70.231 69.758 71.461 -1.4211E-14 160 58 5 0.951686756221503 0.000983739480067961 0.00542546680160824 4.3093E-12 3 16567 210.66 195.6 3 29715000 20446 17766 21610 16502 29042 22253 30232 23022 17344 19107 19352 16776 21786 17113 29038 22095 30364 23639 17660 18524 3 3 3 3 3 3 3 3 3 3 2262 1044 1984 2098 2525;2526;2527 2526 1804 IYISNTFSPSKAEGDSAGTAGTPGGTPAGDK 31 Phospho (STY) _IYISNTFS(ph)PSKAEGDSAGTAGTPGGTPAGDK_ IYIS(0.001)NT(0.021)FS(0.765)PS(0.213)KAEGDSAGTAGTPGGTPAGDK IY(-153.59)IS(-28.63)NT(-15.57)FS(5.56)PS(-5.56)KAEGDS(-71.15)AGT(-121.39)AGT(-152.51)PGGT(-194.18)PAGDK 0 0 1 1 Q92925 Q92925 Q92925 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 931.722290039063 4 759.34739 3033.36045 32675.9898508706 2.3012 0.0017474 226340 171.87 226350 171.87 931.472417422594 77.27 0.45845 77.27 77.028 77.487 -1.4211E-14 59 15 6 0.976860584665743 0.00462079160850951 0.101489298272688 4.0649E-18 1 18124 237.74 215.02 9 17164000 7137.6 6606.8 7601.7 4909.3 5095.4 7798.6 6577.8 7852.5 6983.9 13936 6755.8 6231.5 7599.9 5190.8 5340.2 7714.8 6635.5 8294.5 6873.8 13304 1 1 1 1 1 1 1 1 1 1 2263 1632 1985 2099 2528 2528 3017 IYNISGNGSPLADSK 15 Phospho (STY) _IYNISGNGS(ph)PLADSK_ IYNISGNGS(1)PLADSK IY(-79.35)NIS(-47.98)GNGS(47.98)PLADS(-80.93)K 0 0 1 0 Q53HL2 Q53HL2 Q53HL2 CDCA8 Borealin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.029113769531 3 539.250299 1614.72907 37966.1896435196 2.0578 0.0011097 283310 152.78 283310 152.78 692.025808496373 75.455 0.62618 75.455 75.119 75.746 0 67 21 4 0.828012047197278 0.00339140527213327 0.0734079552174037 6.4535E-07 1 17681 146.15 111.45 4 23524000 7731.6 12214 7272.5 11319 6833.6 7439.9 6695.7 9350.6 12600 12444 7314.3 11533 7343.7 11615 6964.3 7678 6984 9680.3 12182 11934 1 1 1 1 1 1 1 1 1 1 2264 1154 1986 2100 2529 2529 2002 IYQYIQSR 8 Phospho (STY) _IYQY(ph)IQSR_ IYQY(1)IQSR IY(-66.8)QY(66.8)IQS(-83.33)R 0 0 1 0 Q9Y463;Q13627 Q9Y463 Q9Y463 DYRK1B;DYRK1A Dual specificity tyrosine-phosphorylation-regulated kinase 1B;Dual specificity tyrosine-phosphorylation-regulated kinase 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.3505859375 2 575.768264 1149.52197 37334.794311495 1.4333 0.00082526 199010 114.58 199010 114.58 690.350141042723 64.492 1.1035 64.492 64.152 65.256 0 129 37 6 0.935006550775998 0.0107916524381704 0.141261124974222 1.363E-08 1 15112 183.9 136.24 3 409320000 51382 83843 50585 74230 94992 54905 108810 82489 78075 6725.9 48617 79149 51552 76493 93943 56256 109260 81876 78341 8242.3 1 1 1 1 1 1 1 1 1 1 2265 977 1987 2101 2530 2530 4880 KAAGGATPK 9 Phospho (STY) _KAAGGAT(ph)PK_ KAAGGAT(1)PK KAAGGAT(85.16)PK 0 0 1 1 P16403 P16403 P16403 HIST1H1C Histone H1.2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.311401367188 3 294.147787 879.421532 43327.5966507416 1.2996 0.00038228 779070 229.16 779080 229.16 523.311150402005 32.254 0.97051 32.254 31.969 32.939 0 92 32 4 0.99686493601786 0.0509450922560095 1 0.018005 1 7193 85.163 46.806 1 799240000 148530 200170 140080 203490 39114 120650 47492 120480 211750 9027.3 140510 189110 140320 207400 45928 124650 52439 121130 201970 11289 1 1 1 1 1 1 1 1 1 1 2266 409 1988 2102 2531 2531 4406 KAAGGATPKK 10 Phospho (STY) _KAAGGAT(ph)PKK_ KAAGGAT(1)PKK KAAGGAT(68.04)PKK 0 0 1 2 P16403 P16403 P16403 HIST1H1C Histone H1.2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 482.300598144531 4 252.8864 1007.5165 45114.266871983 0.56346 0.00014249 906190 229.16 906190 229.16 482.049625560135 33.975 0.58621 33.975 33.757 34.343 0 68 19 5 0.892232630360891 0.00852400714490044 0.0799939477409568 0.013199 1 7593 68.044 24.416 1 145140000 87481 116770 90624 113740 32294 84147 29073 79239 132990 10841 82791 110290 90352 116490 36268 85625 32594 79999 126810 12042 1 1 1 1 1 1 1 1 1 1 2267 409 1989 2103 2532 2532 4406 KAASLTEDR 9 Phospho (STY) _KAASLT(ph)EDR_ KAAS(0.285)LT(0.715)EDR KAAS(-3.99)LT(3.99)EDR 0 0 1 1 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.911499023438 2 535.747528 1069.4805 35249.7939478687 2.6255 0.0014066 427740 229.16 427750 229.16 764.910481136433 38.494 0.48404 38.494 38.27 38.754 0 48 16 4 0.978634532885771 0.00156945078896615 0.0380683401799093 0.00034459 1 8697 128.36 78.079 2 87460000 21803 27873 20597 27734 15578 20542 14658 22616 28334 5734.2 20627 26329 20746 28369 16105 20948 15339 22778 27377 5922.9 1 1 1 1 1 1 1 1 1 1 2268 861 1990 2104 2533 2533 4512 KAASLTEDRDR 11 Phospho (STY) _KAASLT(ph)EDRDR_ KAAS(0.32)LT(0.68)EDRDR KAAS(-3.27)LT(3.27)EDRDR 0 0 1 2 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 600.652404785156 3 447.876796 1340.60856 40494.271993414 1.5619 0.00069954 341110 152.78 341110 152.78 600.652512526317 33.674 0.72162 33.674 33.384 34.105 0 65 24 3 0.992021171500865 0.00964949535124306 0.0366813947861139 2.5297E-06 1 7508 139.66 103.7 2 236050000 22934 27500 23990 28270 18386 22342 18355 22620 30398 2197.1 21706 25983 24027 28885 19000 22667 19015 22745 29483 2592.4 1 1 1 1 1 1 1 1 1 1 2269 861 1991 2105 2534 2534 4512 KAASPSPQSVR 11 Phospho (STY) _KAAS(ph)PSPQSVR_ KAAS(0.828)PS(0.166)PQS(0.006)VR KAAS(6.98)PS(-6.98)PQS(-21.32)VR 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 555.975036621094 3 403.19921 1206.5758 41795.8117284654 1.8018 0.00072647 378910 152.78 378910 152.78 555.974646128868 31.424 0.73136 31.424 31.09 31.821 0 61 24 4 0.810740010820179 0.00476770713140531 0.0841158154463761 0.0050316 1 6987 88.108 71.97 3 213490000 15454 18516 13647 16273 15229 13689 15390 16935 18612 2694.3 14617 17478 13865 16804 15367 13882 15746 16943 18228 2929 1 1 1 1 1 1 1 1 1 1 2270 1436 1992 2106 2535 2535 2620;2621 KAASPSPQSVR 11 2 Phospho (STY) _KAAS(ph)PSPQS(ph)VR_ KAAS(0.998)PS(0.288)PQS(0.714)VR KAAS(25.29)PS(-3.96)PQS(3.96)VR 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.630615234375 3 429.854654 1286.54213 40130.6580670644 1.6527 0.00071042 355410 152.78 355410 152.78 582.630013216261 32.55 1.7944 32.55 31.702 33.497 0 178 61 4 0.995710382436246 0.00528439968827164 0.085292720262558 0.0032397 2 7353 90.498 67.619 3 44549000 31617 29872 31329 29228 35065 32122 37247 33858 29405 4680.8 29916 28216 31613 30096 35387 32099 37595 34036 29346 5191.2 2 2 2 2 2 2 2 2 2 2 2271 1436 1992 2107 2536;2537 2537 2620;2621 KADRDQSPFSK 11 Phospho (STY) _KADRDQS(ph)PFSK_ KADRDQS(0.998)PFS(0.002)K KADRDQS(27.49)PFS(-27.49)K 0 0 1 2 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 512.2802734375 4 340.407962 1357.60274 43333.7940225719 1.0837 0.00036891 504900 171.87 504900 171.87 512.279917886062 42.789 0.49077 42.789 42.568 43.059 7.1054E-15 44 16 4 0.90297819640689 0.00103290405135015 0.00778982169186221 0.0052656 1 9826 85.28 43.726 2 21248000 8897.1 12512 8894.5 11695 12302 9505.9 13230 11146 12552 2110.5 8418.9 11815 8999.9 12022 12295 9650.5 13404 11181 12414 2245.3 1 1 1 1 1 1 1 1 1 1 2272 952 1993 2108 2538 2538 1583 KAEAGAGSATEFQFR 15 Phospho (STY) _KAEAGAGS(ph)ATEFQFR_ KAEAGAGS(0.969)AT(0.031)EFQFR KAEAGAGS(14.89)AT(-14.89)EFQFR 0 0 1 1 P46783;Q9NQ39 P46783 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.693176269531 3 550.58216 1648.72465 36366.9736888997 2.2245 0.0012247 277480 152.78 277480 152.78 703.356689979627 61.138 0.64318 61.138 60.833 61.476 0 66 21 4 0.84741484484077 0.00646260086699183 0.0853921643097984 0.00010674 1 14331 118.16 100.75 2 33715000 28923 26283 29893 24890 26128 34625 23232 28052 29653 7232.8 27372 24820 29994 25798 26702 34203 23963 28611 28987 7459.8 1 1 1 1 1 1 1 1 1 1 2273 615 1994 2109 2539 2539 1010 KAEFPSSGSNSVLNTPPTTPESPSSVTVTEGSR 33 Phospho (STY) _KAEFPSSGSNSVLNTPPTTPES(ph)PSSVTVTEGSR_ KAEFPSSGSNSVLNTPPT(0.027)T(0.021)PES(0.892)PS(0.026)S(0.031)VT(0.002)VTEGSR KAEFPS(-83.41)S(-81.78)GS(-73.75)NS(-66.04)VLNT(-34.36)PPT(-15.24)T(-16.27)PES(14.52)PS(-15.42)S(-14.52)VT(-26.03)VT(-37.09)EGS(-40.96)R 0 0 1 1 Q4LE39 Q4LE39 Q4LE39 ARID4B AT-rich interactive domain-containing protein 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 972.735656738281 4 857.652977 3426.5828 31877.3158138918 1.8342 0.0015731 133600 114.58 133600 114.58 972.736641778379 69.273 0.48519 69.273 69.061 69.546 1.4211E-14 32 16 3 0.874561811007752 0.000683546726209227 0.0136925933956978 4.9736E-05 1 16262 103.99 86.627 13 8887100 2788.3 2533.5 2436.6 2073 2720.7 2925.4 2333.1 3325.3 2749.6 14436 2637.1 2390.7 2476.5 2170.3 2739.1 2926.4 2404.9 3755 2695.3 13670 1 1 1 1 1 1 1 1 1 1 2274 1142 1995 2110 2540 2540 1986 KAEGEPQEESPLK 13 Phospho (STY) _KAEGEPQEES(ph)PLK_ KAEGEPQEES(1)PLK KAEGEPQEES(152.94)PLK 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 553.049377441406 4 381.176269 1520.67597 41638.1933299665 2.2836 0.00087044 450900 171.87 450900 171.87 553.04841890154 46.099 1.0373 46.099 45.791 46.828 -7.1054E-15 112 35 5 0.956161863308503 0.00495001888258162 0.108687797218856 4.0683E-07 1 10588 152.94 107.08 1 82370000 15164 14741 16574 13824 9820 15157 11245 13531 15744 0 14354 13920 16528 14272 10389 15112 11501 13636 15344 0 1 1 1 1 1 1 1 1 1 0 2275 2072 1996 2111 2541 2541 3749 KAEGEPQEESPLKSK 15 Phospho (STY) _KAEGEPQEES(ph)PLKSK_ KAEGEPQEES(0.998)PLKS(0.002)K KAEGEPQEES(27.14)PLKS(-27.14)K 0 0 1 2 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 885.494689941406 3 579.608263 1735.80296 33399.1079658346 3.2317 0.0018731 527170 305.55 527170 305.55 885.492635747473 45.934 0.556 45.934 45.731 46.287 0 65 18 5 0.990771229227343 0.00330961313604838 0.0562315738657866 0.00011605 1 10619 122.64 96.207 2 35433000 28973 26942 39643 27023 28622 40791 30235 33061 31366 9266.9 27456 25452 39173 27963 29720 40193 30730 33741 30901 9491.1 1 1 1 1 1 1 1 1 1 1 2276 2072 1997 2112 2542 2542 3749 KAEGSPNQGK 10 Phospho (STY) _KAEGS(ph)PNQGK_ KAEGS(1)PNQGK KAEGS(79.65)PNQGK 0 0 1 1 Q9P2E9 Q9P2E9 Q9P2E9 RRBP1 Ribosome-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.996520996094 3 365.832527 1094.47575 40654.1985161862 2.4081 0.00088096 626420 229.16 626420 229.16 594.995474962976 30.467 1.0188 30.467 29.954 30.973 0 99 33 5 0.771505710093406 0.00627209779859889 0.131330738468527 0.0079703 1 6738 79.652 48.424 1 86142000 28602 25929 28672 22106 41023 32145 40890 29261 27265 2505.9 27065 24472 29018 23092 40887 31741 41256 29538 27480 3036.8 1 1 1 1 1 1 1 1 1 1 2277 2109 1998 2113 2543 2543 3806 KAEGTPNQGK 10 Phospho (STY) _KAEGT(ph)PNQGK_ KAEGT(1)PNQGK KAEGT(78.51)PNQGK 0 0 1 1 Q9P2E9 Q9P2E9 Q9P2E9 RRBP1 Ribosome-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.668395996094 3 370.504411 1108.4914 39566.0354496199 2.1487 0.0007961 618510 229.16 618520 229.16 599.667450174524 30.563 0.56304 30.563 30.224 30.787 0 31 18 2 0.921110087571181 0.00227906279123108 0.0640427840689204 0.024895 1 6856 78.505 49.873 1 25752000 13049 12192 13502 12205 14285 14041 14274 12735 13548 2396.6 12349 11518 13580 12560 14450 13981 14511 12897 13399 2551.4 1 1 1 1 1 1 1 1 1 1 2278 2109 1999 2114 2544 2544 4795 KAENQNESSQGK 12 Phospho (STY) _KAENQNESS(ph)QGK_ KAENQNES(0.021)S(0.979)QGK KAENQNES(-16.68)S(16.68)QGK 0 0 1 1 Q9UKI8 Q9UKI8 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.363952636719 3 467.199827 1398.57765 37348.0147951593 2.6943 0.0012588 490500 229.16 490510 229.16 696.363135729266 28.228 0.60163 28.228 28.035 28.637 0 68 20 5 0.987130581072531 0.0093729043705171 0.210201438241525 9.1947E-11 1 6270 176.21 126.06 2 63949000 12491 31068 12738 33005 16328 11940 17110 21764 33086 1717.2 11821 29360 12858 33432 16384 13034 17816 21502 31969 2120.6 1 1 1 1 1 1 1 1 1 1 2279 2172 2000 2115 2545 2545 3914 KAEPSEVDMNSPK 13 Phospho (STY) _KAEPSEVDMNS(ph)PK_ KAEPSEVDMNS(1)PK KAEPS(-51.58)EVDMNS(51.58)PK 0 0 1 1 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.717529296875 3 504.553101 1510.63747 36613.7267998152 1.7483 0.00088209 454190 229.16 454190 229.16 734.049943282953 48.724 0.66405 48.724 48.505 49.169 0 65 22 4 0.961678472739422 0.00192383664336075 0.0100108874951804 5.9163E-07 1 11280 146.78 113.48 2 70061000 29667 41875 30284 40334 18864 29514 19664 31532 46278 7081.5 28075 39549 30321 41334 19854 30105 20706 31764 44534 7397.8 1 1 1 1 1 1 1 1 1 1 2280 2012 2001 2116 2546 2546 3654 KAEQGSEEEGEGEEEEEEGGESK 23 Phospho (STY) _KAEQGS(ph)EEEGEGEEEEEEGGESK_ KAEQGS(1)EEEGEGEEEEEEGGESK KAEQGS(105.09)EEEGEGEEEEEEGGES(-105.09)K 0 0 1 1 Q8NE71 Q8NE71 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1084.48937988281 3 854.655611 2560.94501 29747.4277409939 2.1877 0.0018698 268130 229.16 268140 229.16 1084.15259155924 38.266 0.45961 38.266 38.035 38.495 0 61 15 6 0.976766810101417 0.00169283670607665 0.0267712154681898 2.8391E-12 1 8644 187.43 163.86 2 44979000 7758 12113 7699.9 11981 6378.8 7944.1 7086.1 9055 14391 3676.4 7340.8 11442 7741.8 12245 6568.1 8163.8 7379.1 9150.5 13890 3671.4 1 1 1 1 1 1 1 1 1 1 2281 1514 2002 2117 2547 2547 2778 KAERSPNQGK 10 Phospho (STY) _KAERS(ph)PNQGK_ KAERS(1)PNQGK KAERS(118.51)PNQGK 0 0 1 2 Q9P2E9 Q9P2E9 Q9P2E9 RRBP1 Ribosome-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.022644042969 3 398.859076 1193.5554 39684.7075383892 2.2091 0.00088111 574550 229.16 574550 229.16 628.021815233257 26.133 0.40651 26.133 25.958 26.364 3.5527E-15 43 13 4 0.985021834275937 0.0110756758952861 0.109339061964469 0.0002355 1 5828 118.51 83.304 1 33471000 19158 15320 20850 14143 38531 20374 35001 24805 13655 2746.5 18134 14465 21107 14694 37987 20204 35213 24792 14379 3160.3 1 1 1 1 1 1 1 1 1 1 2282 2109 2003 2118 2548 2548 3807 KAGGTPRK 8 Phospho (STY) _KAGGT(ph)PRK_ KAGGT(1)PRK KAGGT(65.28)PRK 0 0 1 2 P16403 P16403 P16403 HIST1H1C Histone H1.2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 396.241882324219 4 224.36938 893.448416 49686.0431764111 0.7411 0.00016628 766020 171.87 766020 171.87 396.241530653639 28.109 0.40033 28.109 27.836 28.236 3.5527E-15 32 13 3 0.981190093933914 0.0028712338153672 0.0476801737198255 0.016234 1 6257 65.278 30.899 1 10882000 22639 39271 22115 39927 11605 22897 11698 23556 41801 2512 21420 37102 22170 40682 12427 23723 12727 23678 39969 2910.5 1 1 1 1 1 1 1 1 1 1 2283 409 2004 2119 2549 2549 4407 KAILSPK 7 Phospho (STY) _KAILS(ph)PK_ KAILS(1)PK KAILS(45.14)PK 0 0 1 1 Q9BX84 Q9BX84 Q9BX84 TRPM6 Transient receptor potential cation channel subfamily M member 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 508.656127929688 3 279.492895 835.456855 44585.6958726614 1.8053 0.00050457 819920 229.16 819920 229.16 508.655703897977 60.165 0.69424 60.165 59.851 60.546 0 60 23 4 0.84398128802977 0.00473357866992189 0.0407168492328375 0.043176 1 14102 45.137 9.9127 1 28152000 59024 5049.8 61437 3554.8 4399.9 62763 5308.1 23846 4416.7 1288.3 55861 4761.8 61028 4692.6 7844.8 59783 5335.2 25466 4395.8 1765 1 1 1 1 1 1 1 1 1 1 2284 1858 2005 2120 2550 2550 3392 KAISSANLLVR 11 Phospho (STY) _KAIS(ph)SANLLVR_ KAIS(0.926)S(0.074)ANLLVR KAIS(10.98)S(-10.98)ANLLVR 0 0 1 1 Q32P44 Q32P44 Q32P44 EML3 Echinoderm microtubule-associated protein-like 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 571.009094238281 3 417.898872 1250.67479 39416.0411121666 2.1088 0.00088127 365580 152.77 365580 152.78 570.674032923691 69.234 0.54785 69.234 68.941 69.489 0 42 18 3 0.937659466886163 0.00382527993904491 0.0411589935181604 0.0078373 1 16218 80.411 60.03 2 67980000 16614 9969.7 17971 11076 14500 15029 17836 14374 10899 3260.3 15726 9424.3 17981 11368 14960 14886 17805 14542 11048 3402.7 1 1 1 1 1 1 1 1 1 1 2285 1126 2006 2121 2551 2551 1963;1964 KAPKSPAK 8 Phospho (STY) _KAPKS(ph)PAK_ KAPKS(1)PAK KAPKS(90.63)PAK 0 0 1 2 P10412 P10412 P10412 HIST1H1E Histone H1.4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.383361816406 3 302.831799 905.473568 40196.9063315349 1.0273 0.00031111 1009000 305.55 1009000 305.55 608.382829485278 34.176 1.5425 34.176 33.962 35.505 0 101 52 2 0.995399918042862 0.0256155154152458 0.497940723790203 0.007189 2 7631 90.629 22.637 1 4111200000 196880 139390 194390 132100 56527 164330 61485 125820 137280 7740.3 186290 131630 194200 136590 65646 162810 64424 127930 132240 10200 2 2 2 2 2 2 2 2 2 2 2286 353 2007 2122 2552;2553 2552 576 KAQVSPQS 8 Phospho (STY) _KAQVS(ph)PQS_ KAQVS(0.969)PQS(0.031) KAQVS(14.98)PQS(-14.98) 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.876953125 2 462.712957 923.411362 37708.6560532819 2.132 0.00098653 495260 229.16 495260 229.16 691.876403411192 32.453 0.85485 32.453 32.027 32.882 0 154 28 7 0.981491790366914 0.00762521580361993 0.108774746690892 0.018844 1 7213 73.655 67.392 2 807120000 64531 61656 62949 59690 62855 61940 61886 66367 58155 2906.2 61057 58233 63474 61444 63774 62047 62939 66487 57539 4272.5 1 1 1 1 1 1 1 1 1 1 2287 1436 2008 2123 2554 2554 2631;2632 KAQVSPQS 8 Phospho (STY) _KAQVSPQS(ph)_ KAQVSPQS(1) KAQVS(-38.85)PQS(38.85) 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.877624511719 2 462.712957 923.411362 36837.1185783208 1.9553 0.00090475 495260 229.16 495260 229.16 691.876342564443 33.132 0.43178 33.132 32.852 33.284 0 38 14 3 0.928906081666946 0.00317275660021568 0.110987952221939 0.0087028 1 7406 90.104 84.182 2 26302000 16980 19914 16199 18835 23259 17168 23701 21203 24006 3366.2 16064 18806 16444 19378 23193 17340 24112 21213 23673 3660.3 1 1 1 1 1 1 1 1 1 1 2288 1436 2008 2123 2555 2555 2631;2632 KASAAQLR 8 Phospho (STY) _KAS(ph)AAQLR_ KAS(1)AAQLR KAS(51.57)AAQLR 0 0 1 1 P61081 P61081 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 461.601531982422 3 308.826937 923.45898 48174.7673644049 -0.033883 -1.0464E-05 494690 152.77 494690 152.77 461.601699026287 36.017 0.35544 36.017 35.821 36.176 7.1054E-15 27 11 3 0.562786178423551 0.00145389228377729 0.0216046318290356 0.033266 1 8108 51.567 31.733 1 8313600 40851 23296 44881 26015 16749 22964 18207 20944 20354 1546.1 38670 22022 44619 26496 18681 23132 18522 21133 19992 1940.6 1 1 1 1 1 1 1 1 1 1 2289 747 2009 2124 2556 2556 1233 KASGPPVSELITK 13 Phospho (STY) _KAS(ph)GPPVSELITK_ KAS(0.997)GPPVS(0.003)ELITK KAS(24.76)GPPVS(-24.76)ELIT(-49.08)K 0 0 1 1 P16403;P10412;P16402 P16403;P10412;P16402 P10412 HIST1H1C;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.4;Histone H1.3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.080078125 3 469.581209 1405.7218 37519.6334893943 2.4208 0.0011367 488020 229.16 488020 229.16 698.744705435698 74.678 1.3307 74.678 74.07 75.4 0 178 45 6 0.889259104214304 0.0110917264451271 0.305763216344662 4.4658E-05 1 17474 130.36 82.827 3 232610000 12852 34868 13760 38838 16281 14623 17103 25816 42683 6722.7 12164 32961 13836 39246 16409 15891 18070 25664 41031 6927.7 1 1 1 1 1 1 1 1 1 1 2290 353;409;408 2010 2125 2557 2557 577;655 KASGSENEGDYNPGR 15 Phospho (STY) _KAS(ph)GSENEGDYNPGR_ KAS(0.79)GS(0.21)ENEGDYNPGR KAS(5.75)GS(-5.75)ENEGDY(-99.2)NPGR 0 0 1 1 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.336242675781 3 554.224812 1659.65261 37336.5896419853 1.5637 0.00086665 275660 152.77 275660 152.78 707.334256802644 33.299 0.87674 33.299 32.939 33.816 0 102 30 5 0.998723692906724 0.0132146957300756 0.195413677859953 4.4386E-16 1 7424 237.14 210.59 3 145740000 42582 13790 46400 16356 27993 43415 29894 32255 18689 4330.9 40307 13041 46281 17072 29511 42178 30032 32917 18916 4824.6 1 1 1 1 1 1 1 1 1 1 2291 855 2011 2126 2558 2558 1377;1378 KASGSENEGDYNPGR 15 2 Phospho (STY) _KAS(ph)GS(ph)ENEGDYNPGR_ KAS(1)GS(0.999)ENEGDY(0.001)NPGR KAS(38.22)GS(30.51)ENEGDY(-30.51)NPGR 0 0 2 1 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.655639648438 3 580.880256 1739.61894 37188.4948102168 1.627 0.00094512 263010 152.77 263010 152.78 733.655397633605 36.364 1.7954 36.364 35.445 37.241 0 137 61 3 0.749790253235276 0.000478618769451523 0.00659155312208126 0.017436 1 8054 60.325 52.544 3 10395000 9387.5 8593.2 10751 8171.9 11576 9317.2 11040 10532 7922 5098.3 8888.1 8115.3 10757 8434.8 11688 9312.8 11178 10671 7948.9 5044.4 1 1 1 1 1 1 1 1 1 1 2292 855 2011 2127 2559 2559 1377;1378 KASGSENEGDYNPGRK 16 Phospho (STY) _KAS(ph)GSENEGDYNPGRK_ KAS(0.828)GS(0.172)ENEGDYNPGRK KAS(6.83)GS(-6.83)ENEGDY(-92.35)NPGRK 0 0 1 2 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 826.423095703125 3 596.923133 1787.74757 35549.4108855267 2.3794 0.0014203 383910 229.16 383910 229.16 826.420327255509 36.159 0.51993 36.159 35.88 36.4 0 51 17 4 0.975484497017322 0.00137069345361908 0.0107703658369022 0.00011008 1 8123 119.38 83.904 3 19372000 18637 6788 18996 6652.6 11002 19743 10699 14959 7104 2699.1 17637 6411.6 19009 7049.3 11629 19150 10806 15271 7162 2887.7 1 1 1 1 1 1 1 1 1 1 2293 855 2012 2128 2560 2560 1377;1378 KASGSENEGDYNPGRK 16 2 Phospho (STY) _KAS(ph)GS(ph)ENEGDYNPGRK_ KAS(1)GS(1)ENEGDYNPGRK KAS(49.59)GS(46.43)ENEGDY(-46.43)NPGRK 0 0 2 2 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 639.809814453125 4 467.935752 1867.7139 38839.3998087134 2.1407 0.0010017 367300 171.87 367300 171.87 639.807845670835 39.26 1.1959 39.26 38.754 39.95 0 72 40 3 0.382587524323807 0.000554067123239405 0.00826246166867704 0.030514 1 8940 57.484 37.044 3 15745000 7474.3 7216.2 7369.9 5747.1 9145.7 8189.3 9661.4 7446.4 7612.4 2489.9 7072.2 6808.6 7449.8 6029.8 9181.6 8094.9 9753.6 7573.1 7598 2516.8 1 1 1 1 1 1 1 1 1 1 2294 855 2012 2129 2561 2561 1377;1378 KASISYFK 8 Phospho (STY) _KAS(ph)ISYFK_ KAS(0.813)IS(0.187)YFK KAS(6.37)IS(-6.37)Y(-64.44)FK 0 0 1 1 Q9H4L7 Q9H4L7 Q9H4L7 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.998657226563 3 341.835209 1022.4838 38971.9411438006 2.6536 0.00090711 670390 229.16 670400 229.16 570.999770453175 69.34 0.43141 69.34 69.207 69.638 0 33 14 3 0.751490467277962 0.00630295640657532 0.0830414596567008 0.00038353 1 16289 126.12 101.42 3 44456000 30685 12476 28000 11722 35089 28656 37777 29438 13058 2926.8 29026 11782 28440 12354 35205 27983 37648 29586 13933 3437.3 1 1 1 1 1 1 1 1 1 1 2295 1940 2013 2130 2562 2562 3515 KASPEPPDSAEGALK 15 Phospho (STY) _KAS(ph)PEPPDSAEGALK_ KAS(1)PEPPDSAEGALK KAS(56.85)PEPPDS(-56.85)AEGALK 0 0 1 1 Q9H1B7 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.411437988281 3 526.246666 1575.71817 36604.3075652302 1.8774 0.00098795 435470 229.16 435470 229.16 755.410488767907 53.433 0.50857 53.433 53.147 53.656 0 50 16 4 0.965999626609031 0.00287952664464715 0.041941169009935 2.6427E-11 1 12431 208.98 152.33 2 40518000 12735 31170 14224 29183 19318 10943 21579 21853 32388 13688 12056 29434 14303 29793 19346 11946 22153 21910 31499 13394 1 1 1 1 1 1 1 1 1 1 2296 1912 2014 2131 2563 2563 3470 KASPPSGLWSPAYASH 16 Phospho (STY) _KAS(ph)PPSGLWSPAYASH_ KAS(0.991)PPS(0.008)GLWS(0.001)PAYASH KAS(20.89)PPS(-20.89)GLWS(-28.73)PAY(-62.44)AS(-102.12)H 0 0 1 1 Q8TEM1 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.377075195313 3 579.266172 1734.77669 36220.6892278736 2.1641 0.0012536 263740 152.78 263740 152.78 732.041713075452 71.948 1.3715 71.948 71.202 72.573 0 176 46 5 0.962635121175069 0.00328669530031846 0.0309641118558678 4.7347E-07 1 16802 150.94 132.85 5 52677000 8411.6 12038 8356.5 9771 9150.3 9810.5 9940.9 11165 12692 7444.9 7959.3 11359 8428.9 10172 9252.6 9862.8 10156 11371 12407 7268.7 1 1 1 1 1 1 1 1 1 1 2297 1553 2015 2132 2564 2564 2852 KASSPSPLTIGTPESQR 17 Phospho (STY) _KASSPS(ph)PLTIGTPESQR_ KAS(0.014)S(0.027)PS(0.959)PLTIGTPESQR KAS(-18.24)S(-15.57)PS(15.57)PLT(-35.51)IGT(-75.04)PES(-98.55)QR 0 0 1 1 Q9NPI6 Q9NPI6 Q9NPI6 DCP1A mRNA-decapping enzyme 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.414306640625 3 612.634812 1834.88261 34946.6317107398 1.4294 0.0008757 249380 152.78 249380 152.78 765.745828891942 54.971 0.63504 54.971 54.556 55.191 -7.1054E-15 66 21 5 0.884368314610056 0.00391034895486866 0.0175395762302755 2.9449E-07 1 12815 153.57 135.33 6 59792000 31481 27619 33016 30082 26207 33625 25712 31869 26573 13155 29795 26105 33073 30794 26991 33549 26220 32431 26183 13125 1 1 1 1 1 1 1 1 1 1 2298 1998 2016 2133 2565 2565 3625;3626 KASSPSPLTIGTPESQR 17 Phospho (STY) _KASS(ph)PSPLTIGTPESQR_ KAS(0.263)S(0.729)PS(0.009)PLTIGTPESQR KAS(-4.43)S(4.43)PS(-19.11)PLT(-56.72)IGT(-97.71)PES(-113.22)QR 0 0 1 1 Q9NPI6 Q9NPI6 Q9NPI6 DCP1A mRNA-decapping enzyme 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.747253417969 3 612.634812 1834.88261 35255.2134575317 1.9246 0.0011791 249380 152.78 249380 152.78 765.745382789055 57.178 0.49276 57.178 56.985 57.478 -7.1054E-15 53 16 4 0.912441448646355 0.00495548533304258 0.0578294012347311 4.7534E-07 1 13363 139.77 120.38 6 41293000 26197 34260 28009 40170 31004 21362 26916 27377 39750 13865 24796 32398 28128 40582 31240 22353 27946 27646 38677 13689 1 1 1 1 1 1 1 1 1 1 2299 1998 2016 2133 2566 2566 3625;3626 KATGAATPK 9 Phospho (STY) _KATGAAT(ph)PK_ KAT(0.004)GAAT(0.996)PK KAT(-23.94)GAAT(23.94)PK 0 0 1 1 P10412 P10412 P10412 HIST1H1E Histone H1.4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.986999511719 3 308.823192 923.447747 42354.7435576354 1.7127 0.00052893 742050 229.16 742050 229.16 537.986561900813 32.75 0.7569 32.75 32.471 33.228 0 98 25 6 0.99792865896414 0.0886260785171125 1 0.0026098 1 7313 100.18 70.416 2 999790000 414910 339390 376600 323360 107900 376770 112710 288790 337740 1467.5 392470 320520 378140 333850 125640 374170 120660 293130 323710 8065.5 1 1 1 1 1 1 1 1 1 1 2300 353 2017 2134 2567 2567 4386 KATGAATPKK 10 Phospho (STY) _KATGAAT(ph)PKK_ KAT(0.001)GAAT(0.999)PKK KAT(-31.97)GAAT(31.97)PKK 0 0 1 2 P10412 P10412 P10412 HIST1H1E Histone H1.4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 493.056182861328 4 263.892954 1051.54271 44688.9661770354 0.057758 1.5242E-05 868390 229.16 868390 229.16 493.056022721579 34.384 0.83729 34.384 34.022 34.86 0 53 28 2 0.973805494045463 0.000862916711366954 0.00621369313006128 0.012475 1 7660 69.92 45.065 2 158500000 26417 21771 24765 21482 12302 25190 11711 20232 22034 1769.1 24991 20565 24878 22134 13221 25025 12232 20540 21303 2134.1 1 1 1 1 1 1 1 1 1 1 2301 353 2018 2135 2568 2568 4386 KATQASQEY 9 Phospho (STY) _KATQAS(ph)QEY_ KATQAS(1)QEY KAT(-57.08)QAS(48.73)QEY(-48.73) 0 0 1 1 P16104 P16104 P16104 H2AFX Histone H2AX MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.396301269531 2 553.231711 1104.44887 35283.1870992476 1.6579 0.00091718 414230 229.16 414230 229.16 782.394746225582 39.42 0.71984 39.42 39.052 39.772 0 79 24 5 0.99107413844584 0.00585990920133752 0.127588197070166 0.00020741 1 8929 128.97 113.08 3 152740000 33335 23271 32008 22053 82083 33532 92406 44429 23808 11654 31539 21976 32939 22902 80423 33257 91687 44495 26400 12002 1 1 1 1 1 1 1 1 1 1 2302 402 2019 2136 2569 2569 636;4399;4871 KATQASQEY 9 2 Phospho (STY) _KAT(ph)QASQEY(ph)_ KAT(0.966)QAS(0.035)QEY(0.999) KAT(14.56)QAS(-14.56)QEY(29.9) 0 0 2 1 P16104 P16104 P16104 H2AFX Histone H2AX MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.378723144531 2 593.214876 1184.4152 33781.2229593354 2.63 0.0015601 386310 229.16 386310 229.16 822.37769751358 42.33 2.0157 42.33 41.311 43.326 0 156 69 3 0.857765873928858 0.000926608535644704 0.0107344488280475 0.0043428 1 9784 91.937 70.474 3 51998000 14382 16199 14190 15096 37650 16062 41705 24875 16144 5336 13609 15297 14594 15583 36855 16177 41557 24771 17013 5600.2 1 1 1 1 1 1 1 1 1 1 2303 402 2019 2137 2570 2570 636;4399;4871 KAVPMAPAPASPGSSNDSSAR 21 Phospho (STY) _KAVPMAPAPAS(ph)PGSSNDSSAR_ KAVPMAPAPAS(0.941)PGS(0.042)S(0.016)NDSSAR KAVPMAPAPAS(13.47)PGS(-13.47)S(-17.67)NDS(-38.6)S(-42.61)AR 0 0 1 1 Q66K74 Q66K74 Q66K74 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.095275878906 3 693.317266 2076.92997 34211.7794848382 2.1156 0.0014668 220350 152.78 220360 152.78 846.427030313705 49.758 0.38176 49.758 49.572 49.954 7.1054E-15 40 12 4 0.926043995154232 0.00243254993146376 0.055471533797374 1.1829E-07 1 11550 144.2 116.12 5 19999000 14657 11913 16547 12107 12250 15751 11586 12027 12897 11784 13877 11255 16499 12478 12677 15601 11861 12564 12670 11375 1 1 1 1 1 1 1 1 1 1 2304 1224 2020 2138 2571 2571 2157 KAVVLPGGTATSPK 14 Phospho (STY) _KAVVLPGGTATS(ph)PK_ KAVVLPGGTAT(0.188)S(0.812)PK KAVVLPGGT(-42.81)AT(-6.36)S(6.36)PK 0 0 1 1 Q8N1G0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.751342773438 3 469.253203 1404.73778 38029.1037380949 2.3258 0.0010914 488360 229.16 488360 229.16 698.750430133982 61.946 0.52821 61.946 61.68 62.209 0 57 17 4 0.887946175376441 0.00297863083138942 0.0334201816160198 9.0424E-07 1 14509 143.04 121.17 3 55383000 15567 19227 15743 20256 15966 16067 14750 17734 20380 7164.3 14731 18169 15843 20668 16178 16326 15227 17940 19870 7156.5 1 1 1 1 1 1 1 1 1 1 2305 1455 2021 2139 2572 2572 2695 KAYSFCGTVEYMAPEVVNR 19 Phospho (STY) _KAYS(ph)FCGTVEYMAPEVVNR_ KAYS(0.778)FCGT(0.222)VEYMAPEVVNR KAY(-87.93)S(5.44)FCGT(-5.44)VEY(-96.12)MAPEVVNR 0 0 1 1 Q15418;P51812;Q9UK32 Q15418 Q15418 RPS6KA1;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 920.783752441406 3 767.674173 2300.00069 32834.6522504469 1.8602 0.001428 199010 152.78 199010 152.78 920.783621338558 87.217 0.88296 87.217 86.704 87.587 0 105 29 5 0.821139328516152 0.00762398101302674 0.0677643194536614 6.608E-16 1 20312 215.6 177.92 4 60645000 14778 13222 15786 12511 16294 19011 16586 19133 16147 135750 13987 12487 15845 12994 16509 19023 16857 23278 15951 128270 1 1 1 1 1 1 1 1 1 1 2306 1075 2022 2140 2573 2573 1858 KCETQLSQGS 10 Phospho (STY) _KCETQLSQGS(ph)_ KCETQLS(0.073)QGS(0.927) KCET(-99.2)QLS(-11.06)QGS(11.06) 0 0 1 1 Q8NF50 Q8NF50 Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.411437988281 2 609.247035 1216.47952 33936.6587952948 1.5852 0.00096579 376140 229.16 376140 229.16 838.410339793184 36.713 0.46962 36.713 36.485 36.955 0 45 15 4 0.971450780357112 0.00175629448228122 0.0209700356977142 2.4025E-06 1 8258 156.14 148.54 3 72042000 22969 10729 22177 8749.8 58612 22151 66181 30787 8457.1 4190.9 21731 10124 22836 9320.2 57381 21721 65423 30673 10793 4658.8 1 1 1 1 1 1 1 1 1 1 2307 1520 2023 2141 2574 2574 2791 KCSLPAEEDSVLEK 14 Phospho (STY) _KCS(ph)LPAEEDSVLEK_ KCS(0.999)LPAEEDS(0.001)VLEK KCS(31.52)LPAEEDS(-31.52)VLEK 0 0 1 1 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.753845214844 3 562.254832 1683.74267 34791.0382664816 1.9317 0.0010861 407580 229.16 407580 229.16 791.418567272569 68.849 0.62277 68.849 68.584 69.207 0 70 20 4 0.990517918820089 0.00429320071299119 0.0423237351100577 2.8143E-11 1 16153 208.92 155.75 2 48362000 23498 47922 24988 48303 49159 22965 53025 46635 54213 13572 22241 45272 25379 49165 48515 24472 53822 46270 53442 13859 1 1 1 1 1 1 1 1 1 1 2308 491 2024 2142 2575 2575 808 KCSQTQCPR 9 Phospho (STY) _KCS(ph)QTQCPR_ KCS(0.5)QT(0.5)QCPR KCS(0)QT(0)QCPR 0 0 1 1 P29590 P29590 P29590 PML Protein PML MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 568.279479980469 3 415.501907 1243.48389 42142.716702827 1.6627 0.00069087 367690 152.78 367690 152.78 568.278882568586 25.738 0.31357 25.738 25.559 25.873 3.5527E-15 33 10 4 0.918893711374182 0.00874579517012243 0.0435962141586823 0.0079254 1 5744 79.744 61.129 2 29888000 14186 6818.9 13582 7159.6 31117 14646 29613 17979 6083.2 2802.2 13421 6443.5 13923 7450.8 30499 14394 29571 17989 7000.3 3054.7 1 1 1 1 1 1 1 1 1 1 2309 501 2025 2143 2576 2576 830;4438 KDDSDDDGGGWITPSNIK 18 Phospho (STY) _KDDS(ph)DDDGGGWITPSNIK_ KDDS(1)DDDGGGWITPSNIK KDDS(43.43)DDDGGGWIT(-43.43)PS(-62.51)NIK 0 0 1 1 Q9ULX3 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 896.444274902344 3 667.280875 1998.82079 33266.1230374016 2.3522 0.0015695 343430 229.16 343430 229.16 896.441630766569 75.306 0.85627 75.306 74.889 75.746 0 66 29 4 0.930620332893085 0.001166570260834 0.0223913628111059 0.0079877 1 17641 82.719 61.519 3 9612100 4434.9 7660.1 5370.3 7147.2 5644 5323.3 4912.8 6794.9 7471.1 17840 4200.1 7233.3 5355.7 7340.5 5703.4 5469.2 5106 7296.3 7263.2 16956 1 1 1 1 1 1 1 1 1 1 2310 2194 2026 2144 2577 2577 3976 KDGSASAAAK 10 Phospho (STY) _KDGS(ph)ASAAAK_ KDGS(0.988)AS(0.012)AAAK KDGS(19.04)AS(-19.04)AAAK 0 0 1 1 P43243 P43243 P43243 MATR3 Matrin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 558.314392089844 3 329.149856 984.42774 41765.0237664478 2.015 0.00066323 696230 229.16 696230 229.16 558.313666040593 32.63 0.46953 32.63 32.413 32.882 0 47 15 4 0.573216141460053 0.0029300099520682 0.0334946622444967 0.036012 1 7306 49.216 29.863 2 34845000 36117 21863 36784 22272 16940 38754 19121 27965 25442 3225.1 34179 20655 36762 23108 18399 37980 19532 28566 24835 3684 1 1 1 1 1 1 1 1 1 1 2311 595 2027 2145 2578 2578 968 KDNEESEQPPVPGTPTLR 18 Phospho (STY) _KDNEESEQPPVPGT(ph)PTLR_ KDNEESEQPPVPGT(0.991)PT(0.009)LR KDNEES(-101.48)EQPPVPGT(20.19)PT(-20.19)LR 0 0 1 1 O15439 O15439 O15439 ABCC4 Multidrug resistance-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.099243164063 3 691.987803 2072.94158 34686.1240817704 1.873 0.0012961 220780 152.78 220780 152.78 845.098510521718 52.509 0.40226 52.509 52.294 52.697 0 49 13 4 0.829475489232351 0.00298200800501756 0.0566076409991426 5.8815E-07 1 12245 151 131.79 3 25499000 10636 13684 12042 11761 23389 13614 27841 18417 14405 14996 10069 12916 12192 12223 23116 13651 27758 18739 14783 14547 1 1 1 1 1 1 1 1 1 1 2312 93 2028 2146 2579 2579 4326 KDQESPK 7 Phospho (STY) _KDQES(ph)PK_ KDQES(1)PK KDQES(84.48)PK 0 0 1 1 Q92835 Q92835 Q92835 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.630859375 3 304.467185 910.379727 43367.7091266761 1.9816 0.00060332 752670 229.16 752670 229.16 533.630096330037 30.471 0.59451 30.471 30.224 30.819 0 58 19 4 0.913496710184743 0.00556441509835525 0.125659843589461 0.0084598 1 6789 84.479 36.541 1 46204000 20060 6776.8 17070 6681.5 63776 17087 65664 30902 4990.4 3351.2 18971 6401.3 17936 7033.4 61931 16842 65088 30562 7497.3 3870.7 1 1 1 1 1 1 1 1 1 1 2313 1625 2029 2147 2580 2580 3004 KDQESPKMPR 10 Phospho (STY) _KDQES(ph)PKMPR_ KDQES(1)PKMPR KDQES(103.85)PKMPR 0 0 1 2 Q92835 Q92835 Q92835 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.02880859375 3 432.531972 1294.57409 38407.3308960255 1.9195 0.00083025 529820 229.16 529820 229.16 661.694899460719 36.736 0.58557 36.736 36.4 36.985 7.1054E-15 65 19 4 0.918417062085062 0.00207775780398624 0.0139988271034576 0.00040371 1 8251 103.85 65.487 1 48768000 15056 6333.7 14573 6088.9 47116 15932 50412 26379 7319.4 6485.9 14245 5981.8 15107 6425 45898 15673 49977 26250 9049.7 6717.7 1 1 1 1 1 1 1 1 1 1 2314 1625 2030 2148 2581 2581 3004 KDQESPKMPR 10 Phospho (STY) _KDQES(ph)PKMPR_ KDQES(1)PKMPR KDQES(58.83)PKMPR 0 0 1 2 Q92835 Q92835 Q92835 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 496.523223876953 4 324.650798 1294.57409 44308.7239460144 0.36815 0.00011952 529410 171.87 529410 171.87 496.523358839753 36.748 0.67225 36.748 36.372 37.044 -7.1054E-15 74 22 5 0.443141010294425 0.00259931162086919 0.0134058713031244 0.018569 1 8307 58.831 45.694 1 46222000 17422 7030.7 12618 10466 45848 17595 48727 23555 8021.7 1011.5 16468 6661.2 13394 10651 44567 17395 48347 23427 9641.5 1497.6 1 1 1 1 1 1 1 1 1 1 2315 1625 2030 2148 2582 2582 3004 KDRTPPPR 8 Phospho (STY) _KDRT(ph)PPPR_ KDRT(1)PPPR KDRT(64.55)PPPR 0 0 1 2 P62854 P62854 P62854 RPS26 40S ribosomal protein S26 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 502.285705566406 3 349.509608 1045.50699 44492.5675278766 1.2119 0.00042358 437110 152.78 437120 152.78 502.285532277594 23.433 1.5617 23.433 22.891 24.453 0 144 53 4 0.785110996030053 0.0207089124087149 0.332297339268529 0.040209 1 5244 64.55 48.326 1 20339000 7843.7 13866 9746.7 13071 7548.5 8619.2 8222 9817 14034 7410.3 7429.3 13094 9679.3 13398 7805 8867.1 8496.1 10024 13600 7204.9 1 1 1 1 1 1 1 1 1 1 2316 771 2031 2149 2583 2583 4496 KDSGSPNPAR 10 Phospho (STY) _KDS(ph)GSPNPAR_ KDS(0.57)GS(0.43)PNPAR KDS(1.22)GS(-1.22)PNPAR 0 0 1 1 P01106 P01106 P01106 MYC Myc proto-oncogene protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 522.939025878906 3 370.164277 1107.471 42487.0491048632 0.6069 0.00022465 412720 152.78 412720 152.78 522.939824252144 26.734 0.66939 26.734 26.275 26.945 0 50 22 4 0.924582550315692 0.00319308204279484 0.0443286925897625 0.01126 1 5908 70.332 42.363 2 23892000 8426.5 8266.4 9764.8 8138.5 5889.4 8166.2 5960.8 6575.7 8200.8 2380.8 7978.6 7808.3 9708.3 8364.6 6208.5 8168.7 6125.5 6729.3 7996.8 2394 1 1 1 1 1 1 1 1 1 1 2317 283 2032 2150 2584 2584 468 KDSIPQVLLPEEEK 14 Phospho (STY) _KDS(ph)IPQVLLPEEEK_ KDS(1)IPQVLLPEEEK KDS(118.46)IPQVLLPEEEK 0 0 1 1 Q15052 Q15052 Q15052 ARHGEF6 Rho guanine nucleotide exchange factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.839721679688 4 426.966847 1703.83828 40726.311831514 1.8275 0.0007803 402540 171.87 402540 171.87 599.089796993896 82.482 0.74022 82.482 82.145 82.885 0 63 25 3 0.892495308729731 0.00127509472451029 0.0202762943959387 0.000103 1 19268 118.46 92.091 1 22094000 4976 1581.9 5170.6 1723.1 9282.4 5356.3 9235.1 6122.4 1888.7 2851.9 4709.3 1495.2 5245.5 1818.9 9169.4 5221.7 9201.7 6197.5 2175.1 2827.1 1 1 1 1 1 1 1 1 1 1 2318 1051 2033 2151 2585 2585 1813 KDSLTQAQEQGNLLN 15 Phospho (STY) _KDS(ph)LTQAQEQGNLLN_ KDS(0.971)LT(0.029)QAQEQGNLLN KDS(15.19)LT(-15.19)QAQEQGNLLN 0 0 1 1 Q5JTD0 Q5JTD0 Q5JTD0 TJAP1 Tight junction-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1099.068359375 2 869.904005 1737.79346 29610.6849341079 2.1477 0.0018683 263440 229.16 263440 229.17 1099.0673252172 64.023 0.4606 64.023 63.811 64.271 0 43 15 4 0.958403673097219 0.0010495793985965 0.050813525237819 2.0016E-10 1 15036 192.85 163.98 2 16541000 10119 4099.6 9190.1 5516.5 7576.2 10403 7206.7 7245.9 4815.3 11599 9571.3 3880.8 9286.8 5656.2 7776.2 10191 7288.1 7740 4852.7 11089 1 1 1 1 1 1 1 1 1 1 2319 1170 2034 2152 2586 2586 2026 KDSSSVVEWTQAPK 14 Phospho (STY) _KDS(ph)SSVVEWTQAPK_ KDS(0.867)S(0.033)S(0.1)VVEWTQAPK KDS(9.38)S(-14.23)S(-9.38)VVEWT(-72.91)QAPK 0 0 1 1 Q8TC07 Q8TC07 Q8TC07 TBC1D15 TBC1 domain family member 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.0830078125 3 547.922182 1640.74472 36406.8459210721 2.7281 0.0014948 418240 229.16 418240 229.16 777.419845960041 68.456 0.54879 68.456 68.214 68.763 0 48 18 3 0.879942507312497 0.00189626582731048 0.0272938584834555 1.2172E-10 1 16059 194.18 152.63 4 17011000 11543 10169 11006 9338.7 14407 11540 16362 12824 10790 14881 10921 9602 11159 9674.8 14442 11513 16409 13262 10882 14309 1 1 1 1 1 1 1 1 1 1 2320 1541 2035 2153 2587 2587 2829 KDWDDDQND 9 Unmodified _KDWDDDQND_ 0 0 0 1 P50990 P50990 P50990 CCT8 T-complex protein 1 subunit theta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 804.882080078125 2 575.717807 1149.42106 34917.0160637553 2.753 0.001585 398050 229.16 398050 229.16 804.880793676921 45.946 1.3919 45.946 45.614 47.005 7.1054E-15 148 47 5 0.867618826505819 0.00403852217610482 0.0730710757717358 0.0022167 1 10549 94.692 84.588 1 235860000 83639 95098 79555 91446 73178 74076 77889 80481 102130 8970.1 79129 89815 80273 93838 74728 75122 79722 80750 99743 10309 1 1 1 1 1 1 1 1 1 1 2321 671 2036 2154 2588 2588 KEDGTFYEFGEDIPEAPER 19 Unmodified _KEDGTFYEFGEDIPEAPER_ 0 0 0 1 O43776 O43776 O43776 NARS Asparagine--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 896.781982421875 3 743.670929 2227.99096 34208.3771979832 1.772 0.0013178 205430 152.78 205440 152.78 897.11451562724 78.818 0.64234 78.818 78.551 79.193 0 71 21 6 0.516516591822692 0.00207632261679523 0.0302760671856139 4.3909E-05 1 18485 123.99 108.4 1 25188000 23143 21607 27495 22739 14417 23169 16782 20951 25295 17145 21915 20417 27280 23286 15444 23209 17202 21618 24597 16629 1 1 1 1 1 1 1 1 1 1 2322 129 2037 2155 2589 2589 KEEPSQNDISPK 12 Phospho (STY) _KEEPSQNDIS(ph)PK_ KEEPSQNDIS(1)PK KEEPS(-44.4)QNDIS(44.4)PK 0 0 1 1 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.7158203125 3 484.551978 1450.6341 37358.6072677711 2.5292 0.0012255 472940 229.16 472940 229.16 713.71473181492 42.182 0.74311 42.182 41.938 42.681 0 67 25 4 0.618176090967007 0.00270632704170976 0.0405144865549591 0.00013204 1 9625 110.74 69.644 2 25511000 32209 26473 32089 25849 15317 30942 15112 25021 27178 5763.5 30477 25005 32113 26661 16543 30724 15723 25501 26305 6006.1 1 1 1 1 1 1 1 1 1 1 2323 2012 2038 2156 2590 2590 3655 KEESEESDDDMGFGLFD 17 Oxidation (M),Phospho (STY) _KEES(ph)EESDDDM(ox)GFGLFD_ KEESEESDDDM(1)GFGLFD KEES(0.977)EES(0.023)DDDMGFGLFD KEESEESDDDM(137.72)GFGLFD KEES(16.25)EES(-16.25)DDDMGFGLFD 0 1 1 1 P05387;P05386 P05387;P05386 P05387 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.690368652344 3 682.578369 2044.71328 33495.9552934658 2.121 0.0014478 223820 152.78 223830 152.78 835.688535625389 89.828 0.87083 89.828 89.576 90.447 0 63 29 3 0.955133292658303 0.00167790686234697 0.0190158002968238 2.5457E-06 1 20922 137.72 123.98 2 6464600 4176.6 4493.9 5445.9 5076.4 4525.5 5366.7 5949.2 5776.1 4865.2 35408 3956.9 4248.5 5402.1 5181.4 4665.9 5438.2 5957.8 6844.9 4846.4 33474 1 1 1 1 1 1 1 1 1 1 2324 302;301 2039 2157 2591 2591 26 495;496 KEESEESDDDMGFGLFD 17 Phospho (STY) _KEESEES(ph)DDDMGFGLFD_ KEES(0.038)EES(0.962)DDDMGFGLFD KEES(-14.05)EES(14.05)DDDMGFGLFD 0 0 1 1 P05387;P05386 P05387;P05386 P05387 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1245.03063964844 2 1015.36646 2028.71836 27704.4079864988 2.1728 0.0022062 225690 229.16 225700 229.16 1245.0260852315 100.16 0.58796 100.16 100.03 100.62 0 41 20 4 0.976588864738302 0.00184464138726717 0.0793261079430098 1.031E-15 1 23379 227.41 202.19 2 42507000 6187.1 7922 7151.6 5981.1 9247.2 6182.6 7979.3 11530 7582.7 189800 5858.2 7472.6 7169 6262.9 9242.1 6612.6 8172.3 17077 7498.6 178990 1 1 1 1 1 1 1 1 1 1 2325 302;301 2039 2158 2592 2592 495;496 KEESPPPPK 9 Phospho (STY) _KEES(ph)PPPPK_ KEES(1)PPPPK KEES(102.66)PPPPK 0 0 1 1 P78332 P78332 P78332 RBM6 RNA-binding protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.669616699219 3 363.50564 1087.49509 40889.7470910717 1.0563 0.00038397 630430 229.16 630430 229.16 592.668520411053 37.23 1.1411 37.23 36.628 37.769 0 106 42 4 0.872628129862727 0.0064872677444904 0.120062046968986 0.0004588 1 8367 102.66 73.685 1 48024000 28097 26587 28764 29589 33609 28443 31917 27067 29932 2993.4 26589 25133 28982 30180 33795 28549 32515 27294 29618 3445.1 1 1 1 1 1 1 1 1 1 1 2326 795 2040 2159 2593 2593 1269 KEETPGTPK 9 Phospho (STY) _KEETPGT(ph)PK_ KEET(0.02)PGT(0.98)PK KEET(-16.8)PGT(16.8)PK 0 0 1 1 Q99442 Q99442 Q99442 SEC62 Translocation protein SEC62 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.328674316406 3 356.165395 1065.47436 40724.7674747902 1.363 0.00048547 643420 229.16 643420 229.16 585.328339393031 35.606 0.69979 35.606 35.15 35.85 0 70 23 5 0.823333735955548 0.0107191212395986 0.178625798829925 0.01119 1 7996 91.812 60.215 2 108170000 65869 53571 76620 54190 56449 73413 55965 56871 57882 7190.9 62369 50610 76286 55912 58471 72534 57044 57904 57031 8087.3 1 1 1 1 1 1 1 1 1 1 2327 1764 2041 2160 2594 2594 4744 KENPSPLFSIK 11 Phospho (STY) _KENPS(ph)PLFSIK_ KENPS(1)PLFSIK KENPS(64.84)PLFS(-64.84)IK 0 0 1 1 Q9P1Y6 Q9P1Y6 Q9P1Y6 PHRF1 PHD and RING finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.3916015625 3 447.226766 1338.65847 38584.2603872598 2.1844 0.00097693 512410 229.16 512410 229.16 676.389423214012 78.561 0.46012 78.561 78.289 78.749 0 41 15 4 0.964510657815969 0.00187640959952094 0.0357179475937508 7.9729E-07 1 18397 145.55 68.468 2 9416500 8279.8 8406.6 8149.4 8700.9 6749.7 8194.9 6327.3 9400.6 8950 6439.2 7834.3 7943.1 8195.6 8907.7 6928.8 8264 6532.8 9576.8 8719.7 6280.8 1 1 1 1 1 1 1 1 1 1 2328 2096 2042 2161 2595 2595 3787 KEPVAGSPFER 11 Phospho (STY) _KEPVAGS(ph)PFER_ KEPVAGS(1)PFER KEPVAGS(81.85)PFER 0 0 1 1 Q96JB3 Q96JB3 Q96JB3 HIC2 Hypermethylated in cancer 2 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.647033691406 3 432.870982 1295.59112 40641.4013007681 2.035 0.00088088 352930 152.78 352940 152.78 585.646186922062 51.075 0.6091 51.075 50.822 51.431 7.1054E-15 65 20 4 0.944183652971922 0.00371722398348956 0.015806309404978 0.0073114 1 11865 81.854 52.121 1 41033000 9272.2 43723 8077.6 44440 9181.8 9787 10153 23143 48028 2885.2 8769.4 41308 8217.8 45029 9302 11530 11325 22783 45783 3252.4 1 1 1 1 1 1 1 1 1 1 2329 1697 2043 2162 2596 2596 3116 KEQTPEHGK 9 Phospho (STY) _KEQT(ph)PEHGK_ KEQT(1)PEHGK KEQT(67.96)PEHGK 0 0 1 1 O76021 O76021 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 607.66552734375 3 378.504411 1132.4914 41234.0873732 1.3482 0.00051029 605440 229.16 605440 229.16 607.666247173522 26.939 0.55304 26.939 26.74 27.293 0 36 18 4 0.8421140908741 0.00163553313103601 0.0129264579748895 0.035633 1 5997 67.964 54.536 1 13283000 8893.2 13588 7958.3 13891 7448 9719 7423 9112.4 13765 3714.6 8411.7 12838 8061 14177 7594 9927.5 7730.8 9275.8 13313 3708.6 1 1 1 1 1 1 1 1 1 1 2330 210 2044 2163 2597 2597 4348 KESAPPSLR 9 Phospho (STY) _KES(ph)APPSLR_ KES(0.941)APPS(0.059)LR KES(12.03)APPS(-12.03)LR 0 0 1 1 Q8WUI4 Q8WUI4 Q8WUI4 HDAC7 Histone deacetylase 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 508.284027099609 3 355.509385 1063.50632 44018.5663029984 0.68437 0.0002433 429740 152.78 429740 152.78 508.284603014044 40.65 1.4767 40.65 40.149 41.626 7.1054E-15 98 50 3 0.975799695015231 0.00320631791998362 0.0426420742085712 0.0016309 1 9219 98 65.561 2 33476000 13316 19207 12450 18290 28446 14643 27828 20544 18848 3439.9 12597 18139 12781 18777 27905 14921 28110 20482 18979 3714.6 1 1 1 1 1 1 1 1 1 1 2331 1564 2045 2164 2598 2598 2876 KESPTSSSFGK 11 Phospho (STY) _KES(ph)PTSSSFGK_ KES(0.97)PT(0.03)SSSFGK KES(15.06)PT(-15.06)S(-37.95)S(-57.06)S(-54.91)FGK 0 0 1 1 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.681518554688 3 412.183226 1233.52785 40155.902564316 1.4291 0.00058903 555970 229.16 555980 229.16 641.34691767138 48.267 0.40795 48.267 48.038 48.446 7.1054E-15 26 13 3 0.87831721364616 0.0016796754641047 0.012685409234238 7.9934E-05 1 11184 124.16 102.86 5 12499000 15060 17192 15596 18491 10252 14444 10685 15303 18540 5238.7 14253 16248 15608 18841 10733 14679 11070 15475 17960 5287 1 1 1 1 1 1 1 1 1 1 2332 1204 2046 2165 2599 2599 2113 KESVSPEDSEK 11 Phospho (STY) _KESVS(ph)PEDSEK_ KES(0.062)VS(0.936)PEDS(0.002)EK KES(-11.8)VS(11.8)PEDS(-26.9)EK 0 0 1 1 P35251 P35251 P35251 RFC1 Replication factor C subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.016845703125 3 438.853545 1313.53881 39568.3809327345 1.8042 0.00079176 522190 229.16 522190 229.16 668.350802634493 40.445 0.4788 40.445 40.265 40.744 0 40 15 3 0.88617272371931 0.00133714989204865 0.0103537053604237 0.00020223 1 9199 101.67 61.644 3 11159000 18053 14490 19976 15324 19216 20257 17447 19395 16100 5462.4 17090 13693 19992 15763 19519 20084 17808 19653 15943 5592.3 1 1 1 1 1 1 1 1 1 1 2333 544 2047 2166 2600 2600 878 KETERASPIK 10 Phospho (STY) _KETERAS(ph)PIK_ KET(0.073)ERAS(0.927)PIK KET(-11.03)ERAS(11.03)PIK 0 0 1 2 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 482.532165527344 4 310.408968 1237.60677 45714.2147237078 1.3121 0.00040727 553700 171.87 553700 171.87 482.532045060928 36.311 0.42648 36.311 36.086 36.513 0 32 14 3 0.724812172970961 0.000653895366712772 0.00955462366299731 0.042018 1 8193 41.092 12.795 2 9381300 9785.4 13979 10461 13207 8632 9232.2 9792 9971.3 14917 2866.7 9262 13202 10475 13543 8889 9446 10052 10060 14501 2930.1 1 1 1 1 1 1 1 1 1 1 2334 491 2048 2167 2601 2601 804 KETESEAEDNLDDLEK 16 Phospho (STY) _KETES(ph)EAEDNLDDLEK_ KET(0.102)ES(0.898)EAEDNLDDLEK KET(-9.46)ES(9.46)EAEDNLDDLEK 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 878.434875488281 3 648.936774 1943.78849 32952.7345633629 2.4349 0.0015801 353140 229.16 353140 229.16 878.433275081074 68.036 0.93802 68.036 67.705 68.643 0 104 31 5 0.896519177768266 0.00787087427932268 0.231974302298843 1.7542E-11 1 16007 209.75 155.09 2 69034000 22416 27330 20896 27898 26918 23505 21754 24934 33897 16403 21205 25821 21192 28539 26900 23805 22724 25450 32931 16022 1 1 1 1 1 1 1 1 1 1 2335 1436 2049 2168 2602 2602 2633 KETPPPLVPPAAR 13 Phospho (STY) _KET(ph)PPPLVPPAAR_ KET(1)PPPLVPPAAR KET(71.7)PPPLVPPAAR 0 0 1 1 Q9BQA1 Q9BQA1 Q9BQA1 WDR77 Methylosome protein 50 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.03515625 3 484.925198 1451.75377 39239.191944154 1.703 0.00082582 315050 152.78 315050 152.78 638.034842384227 59.895 1.0066 59.895 58.96 59.967 0 50 34 2 0.761067055800816 0.00194787523914818 0.0138754143198062 0.035554 1 13985 71.697 50.744 1 38641000 13242 15533 14728 17697 12526 13789 12628 15399 18134 3763.9 12535 14686 14718 17976 12848 14023 13000 15497 17659 3900.6 1 1 1 1 1 1 1 1 1 1 2336 1803 2050 2169 2603 2603 4750 KETPPPLVPPAAR 13 Phospho (STY) _KET(ph)PPPLVPPAAR_ KET(1)PPPLVPPAAR KET(140.46)PPPLVPPAAR 0 0 1 1 Q9BQA1 Q9BQA1 Q9BQA1 WDR77 Methylosome protein 50 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 637.701232910156 3 484.925198 1451.75377 39003.1236901955 1.7117 0.00083006 315050 152.78 315050 152.78 637.700184186232 60.524 1.7635 60.524 59.483 61.247 0 180 60 5 0.957457334452423 0.0259999174202736 0.866683579112364 2.1388E-06 1 14177 140.46 122.13 1 153640000 55994 72005 44289 63086 39573 49633 32089 53589 64074 1668.7 52941 67970 45197 65103 40362 50403 33899 53650 61865 2811.6 1 1 1 1 1 1 1 1 1 1 2337 1803 2050 2169 2604 2604 4750 KETQSPEQVK 10 Phospho (STY) _KETQS(ph)PEQVK_ KETQS(1)PEQVK KET(-35.14)QS(35.14)PEQVK 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.695190429688 3 418.530625 1252.57005 39001.5768924176 2.6977 0.0011291 547540 229.16 547540 229.16 647.693615512178 38.168 1.3698 38.168 37.799 39.169 0 164 46 6 0.906778936463708 0.0324196289250217 0.352202974706334 1.1599E-06 1 8626 160.5 114.84 2 424490000 170920 157930 182990 167040 129470 161580 134730 151170 180350 364.92 161780 149240 182920 170870 134660 162080 138140 152050 176010 3842.3 1 1 1 1 1 1 1 1 1 1 2338 2072 2051 2170 2605 2605 3746 KETQSPEQVKSEK 13 Phospho (STY) _KETQS(ph)PEQVKSEK_ KET(0.006)QS(0.994)PEQVKSEK KET(-21.86)QS(21.86)PEQVKS(-53.12)EK 0 0 1 2 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.607177734375 4 400.192184 1596.73963 38586.0056467345 2.2742 0.0009101 572630 229.16 572630 229.16 629.605777058203 41.302 0.76857 41.302 40.829 41.597 7.1054E-15 91 26 4 0.867402483545546 0.00166388569152767 0.0252165798112835 0.0086444 1 9355 76.759 44.054 3 33824000 14002 14000 13954 14660 12297 13972 13047 12836 15802 3451.6 13250 13229 14035 15001 12591 14028 13320 13023 15475 3547.2 1 1 1 1 1 1 1 1 1 1 2339 2072 2052 2171 2606 2606 3746 KETSFGSSENITMTSLSK 18 Phospho (STY) _KETSFGSS(ph)ENITMTSLSK_ KET(0.031)S(0.19)FGS(0.306)S(0.473)ENITMTSLSK KET(-11.79)S(-3.97)FGS(-1.9)S(1.9)ENIT(-59.8)MT(-100.19)S(-118.21)LS(-128.78)K 0 0 1 1 Q9UMZ2 Q9UMZ2 Q9UMZ2 SYNRG Synergin gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 905.806518554688 3 676.306144 2025.8966 32593.1945908035 2.0815 0.0014077 338850 229.16 338850 229.16 905.469628453217 75.605 0.34513 75.605 75.37 75.715 0 26 11 3 0.980143110743534 0.00205088657506254 0.0854046124250649 1.2889E-07 1 17730 159.73 120.64 8 11025000 8879.8 7902.3 7267.3 8048.7 10010 7815.2 8554.2 8901.8 7758.3 21335 8396.6 7465.8 7441.3 8251.5 9974.7 7897.8 8755.6 9529.9 7688.9 20296 1 1 1 1 1 1 1 1 1 1 2340 2200 2053 2172 2607 2607 3984;3985 KFDGVEGPRTPK 12 Phospho (STY) _KFDGVEGPRT(ph)PK_ KFDGVEGPRT(1)PK KFDGVEGPRT(72.43)PK 0 0 1 2 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 525.548156738281 4 353.424884 1409.67043 43970.0997052405 0.61371 0.0002169 486310 171.87 486310 171.87 525.297281844913 50.61 0.63368 50.61 50.274 50.907 -7.1054E-15 72 21 4 0.804937117999782 0.00278546660377973 0.0268259034833883 0.012203 1 11741 72.433 52.594 1 29144000 20280 12365 20581 11987 11178 20362 9530.8 13266 12882 1779.1 19191 11678 20588 12465 11879 19950 9872.4 13636 12569 1982.3 1 1 1 1 1 1 1 1 1 1 2341 1273 2054 2173 2608 2608 4629 KFELLPTPPLSPSR 14 Phospho (STY) _KFELLPTPPLS(ph)PSR_ KFELLPT(0.026)PPLS(0.969)PS(0.005)R KFELLPT(-15.74)PPLS(15.74)PS(-22.67)R 0 0 1 1 P01106;P04198 P01106 P01106 MYC;MYCN Myc proto-oncogene protein;N-myc proto-oncogene protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.40185546875 3 554.626929 1660.85896 38757.3779511225 1.4428 0.00080019 275460 152.78 275460 152.78 707.402639651939 91.284 0.63169 91.284 90.936 91.568 0 54 21 4 0.618711080309148 0.000343317413684651 0.00281542234519968 0.0021281 1 21249 96.718 73.58 3 13468000 7993 6358.4 8139.6 6561.9 4277.1 8298 4802.3 6663.5 5844 14590 7563.9 6007.7 8141.4 6753.1 4576.8 8247 4891.7 7187 5722.1 13892 1 1 1 1 1 1 1 1 1 1 2342 283 2055 2174 2609 2609 467 KFELLPTPPLSPSRR 15 Phospho (STY) _KFELLPTPPLS(ph)PSRR_ KFELLPTPPLS(0.953)PS(0.047)RR KFELLPT(-43.6)PPLS(13.03)PS(-13.03)RR 0 0 1 2 P01106 P01106 P01106 MYC Myc proto-oncogene protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 569.829711914063 4 455.247294 1816.96007 41830.8613676828 1.7619 0.00080209 251690 114.58 251690 114.58 570.079222967274 82.689 0.65866 82.689 82.37 83.028 -1.4211E-14 72 22 4 0.988958421712778 0.0020697776172663 0.0320362096725957 0.00014731 1 19328 105.96 87.362 3 9005800 2904.3 2829.3 3174.9 2741.4 1985.9 2209.1 2457.4 2709.9 2439.4 1260.3 2749.2 2672.3 3167.7 2811.6 2092.1 2246.7 2478.3 2736.8 2407.7 1249.4 1 1 1 1 1 1 1 1 1 1 2343 283 2056 2175 2610 2610 467 KFGYVDFESAEDLEK 15 Unmodified _KFGYVDFESAEDLEK_ 0 0 0 1 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.114807128906 3 592.949075 1775.8254 35308.2911390152 2.5441 0.0015085 386480 229.16 386480 229.17 822.113166946246 87.254 0.62118 87.254 86.936 87.557 0 37 20 3 0.971280657736988 0.00111762292974992 0.0126148109457552 5.8081E-07 1 20365 159.19 105.42 1 13986000 11139 10411 11522 10452 11822 12850 13663 11907 11204 14872 10542 9835 11587 10768 12003 12789 13752 12428 11160 14279 1 1 1 1 1 1 1 1 1 1 2344 437 2057 2176 2611 2611 KFSGFSAKPNNSGEAPSSPTPK 22 Phospho (STY) _KFSGFSAKPNNSGEAPSS(ph)PTPK_ KFSGFSAKPNNSGEAPS(0.025)S(0.974)PTPK KFS(-81.63)GFS(-82.64)AKPNNS(-65.44)GEAPS(-15.84)S(15.84)PT(-34.76)PK 0 0 1 2 P49916 P49916 P49916 LIG3 DNA ligase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.938781738281 4 579.523049 2314.06309 35524.0168102113 1.7272 0.0010009 395430 229.16 395430 229.16 808.937037753573 61.638 0.44248 61.638 61.36 61.803 7.1054E-15 41 14 5 0.737617613186917 0.00152340533683291 0.0186843378270116 5.3526E-05 1 14471 110.03 87.656 6 22689000 14380 12674 16280 12328 14936 18440 16043 13604 14659 12008 13615 11971 16270 12777 15251 18172 16239 14195 14523 11622 1 1 1 1 1 1 1 1 1 1 2345 660 2058 2177 2612 2612 1114 KFSWGQQR 8 Phospho (STY) _KFS(ph)WGQQR_ KFS(1)WGQQR KFS(68.55)WGQQR 0 0 1 1 Q9Y2K6 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 525.613830566406 3 372.837724 1115.49134 43355.3607711773 0.92987 0.00034669 409760 152.78 409770 152.78 525.613446346784 61.581 0.4692 61.581 61.302 61.771 -7.1054E-15 29 15 2 0.792162854163069 0.00126101773393323 0.0233092487930937 0.013595 1 14427 68.548 40.812 1 13455000 19033 21950 19961 22092 19394 19893 22658 22915 24120 2120.7 18014 20737 20045 22639 19763 20079 22947 22933 23737 2527.2 1 1 1 1 1 1 1 1 1 1 2346 2251 2059 2178 2613 2613 4158 KFTYLGSQDR 10 Phospho (STY) _KFTYLGS(ph)QDR_ KFTYLGS(1)QDR KFT(-38.86)Y(-58.5)LGS(38.86)QDR 0 0 1 1 Q7Z2W4 Q7Z2W4 Q7Z2W4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 584.976257324219 3 432.199099 1293.57547 41656.9279565036 1.7782 0.00076854 353480 152.78 353490 152.78 584.974788994282 61.411 0.79453 61.411 61.155 61.949 7.1054E-15 51 26 3 0.976261968593179 0.00178637951099643 0.0552683234322179 0.005177 1 14392 87.566 53.68 3 13893000 7882.8 8201.4 7965.1 10055 17395 8380.2 17681 12889 8074.3 2268.7 7459.4 7758.1 8131.7 10184 17091 8535.5 17720 12822 8374.4 2434.6 1 1 1 1 1 1 1 1 1 1 2347 1328 2060 2179 2614 2614 2381 KGAGDGSDEEVDGK 14 Phospho (STY) _KGAGDGS(ph)DEEVDGK_ KGAGDGS(1)DEEVDGK KGAGDGS(151.96)DEEVDGK 0 0 1 1 P35579 P35579 P35579 MYH9 Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 711.357055664063 3 481.859359 1442.55625 36974.1051508233 1.9615 0.00094516 475580 229.16 475580 229.16 711.022358824239 39.982 3.3749 39.982 39.48 42.855 0 431 116 5 0.994201460791481 0.00959680518537569 0.0406289464532474 6.5971E-07 4 9292 151.96 118.13 1 516080000 315860 127440 322480 126960 297940 301770 313850 259920 140630 42426 298910 120390 324070 133200 303860 294230 313960 263620 146100 45964 4 4 4 4 4 4 4 4 4 4 2348 547 2061 2180 2615;2616;2617;2618 2616 886 KGDRSPEPGQTWTR 14 Phospho (STY) _KGDRS(ph)PEPGQTWTR_ KGDRS(1)PEPGQTWTR KGDRS(42.27)PEPGQT(-42.27)WT(-56.33)R 0 0 1 2 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.703796386719 3 565.593059 1693.75735 36670.7663893943 2.42 0.0013688 270110 152.77 270120 152.78 718.368181612428 38.206 0.95266 38.206 37.922 38.875 -7.1054E-15 114 32 5 0.998549235393464 0.0122534346014863 0.176060345509356 0.00013209 1 8647 122.44 99.449 3 118710000 74335 52437 83736 51041 12635 79284 13479 55673 58447 41881 70375 49528 82908 52946 17075 77993 14912 58021 55763 40725 1 1 1 1 1 1 1 1 1 1 2349 896 2062 2181 2619 2619 1472 KGDVEGSQSQDEGEGSGESER 21 Unmodified _KGDVEGSQSQDEGEGSGESER_ 0 0 0 1 Q9UQE7 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.083251953125 3 722.972107 2165.89449 32726.2447386807 1.7625 0.0012742 211320 152.78 211320 152.78 876.08203659893 29.031 0.29465 29.031 28.896 29.191 0 38 9 5 0.992211521087438 0.00442722362944448 0.0565406053439737 4.5594E-42 1 6461 350.69 329.23 1 24687000 19611 9793.3 22500 9366.2 9454.7 20849 10781 14806 11109 1608.9 18568 9249 22333 9827.5 10384 20313 10919 15134 10947 1857.7 1 1 1 1 1 1 1 1 1 1 2350 2230 2063 2182 2620 2620 KGDVEGSQSQDEGEGSGESER 21 Phospho (STY) _KGDVEGSQS(ph)QDEGEGSGESER_ KGDVEGSQS(1)QDEGEGSGESER KGDVEGS(-39.93)QS(39.93)QDEGEGS(-115.36)GES(-149.04)ER 0 0 1 1 Q9UQE7 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.73876953125 3 749.62755 2245.86082 33242.1709426146 2.1698 0.0016265 203800 152.77 203800 152.78 902.736532948415 31.337 0.52679 31.337 31.09 31.617 0 55 17 4 0.899719980802771 0.00210267918661858 0.030830492498697 5.0999E-23 1 6988 251.52 226.63 4 17386000 5887.7 5070.8 6507.4 5334.2 7264.3 6329.3 7140.7 7380 5270.9 18817 5573.6 4791.7 6526 5476.9 7323.6 6348.4 7223.3 7929 5280.1 17889 1 1 1 1 1 1 1 1 1 1 2351 2230 2063 2183 2621 2621 4123 KGESGQSWPR 10 Phospho (STY) _KGESGQS(ph)WPR_ KGES(0.049)GQS(0.951)WPR KGES(-12.84)GQS(12.84)WPR 0 0 1 1 Q15185 Q15185 Q15185 PTGES3 Prostaglandin E synthase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.287109375 3 404.511677 1210.5132 42566.345365784 1.2855 0.00051998 377680 152.77 377680 152.78 557.28746665072 43.413 0.39983 43.413 43.151 43.551 0 30 13 3 0.924905354028196 0.00139669926128775 0.0163342725818962 0.031371 1 9920 52.265 36.041 2 17654000 13077 12447 12373 12650 13489 12737 13441 14165 12302 1615.6 12372 11759 12513 12978 13621 12784 13653 14202 12186 1849.2 1 1 1 1 1 1 1 1 1 1 2352 1064 2064 2184 2622 2622 1839 KGGSTSSSPSR 11 Phospho (STY) _KGGSTSSS(ph)PSR_ KGGS(0.007)T(0.007)S(0.021)S(0.119)S(0.846)PSR KGGS(-20.82)T(-20.82)S(-16.11)S(-8.5)S(8.5)PS(-36.26)R 0 0 1 1 Q14739 Q14739 Q14739 LBR Lamin-B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.607849121094 3 377.499437 1129.47648 41978.8917440849 1.652 0.00062361 404700 152.77 404700 152.78 530.275258588743 23.24 1.0982 23.24 22.631 23.729 3.5527E-15 94 37 4 0.994228564895231 0.0240351475457549 0.217211216630272 0.0039495 1 5207 91.076 62.452 6 38621000 4632.5 11097 5450.8 10246 7758.9 5500.6 8493.2 10565 13463 4936.1 4386.6 10478 5471.2 10496 7752.5 5798.1 8746.2 10550 13073 4892.5 1 1 1 1 1 1 1 1 1 1 2353 1026 2065 2185 2623 2623 1754 KGGSTSSSPSRR 12 Phospho (STY) _KGGSTSSS(ph)PSRR_ KGGS(0.002)T(0.007)S(0.079)S(0.231)S(0.678)PS(0.004)RR KGGS(-25.54)T(-19.87)S(-9.35)S(-4.68)S(4.68)PS(-22.61)RR 0 0 1 2 Q14739 Q14739 Q14739 LBR Lamin-B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.309326171875 3 429.53314 1285.57759 41296.2988754391 2.1867 0.00093927 355680 152.77 355680 152.78 582.308133399465 21.484 0.71072 21.484 21.371 22.081 0 54 24 4 0.71518559070704 0.0251490005942671 0.161342773564011 0.032986 1 4852 58.246 41.993 6 17787000 4386.9 6941.1 3758.1 7065.2 5178.5 4775.2 7280.6 6999.5 7542.9 5355.1 4148.8 6557.7 3841.7 7210 5201.2 4926.6 7317.2 7096.2 7431.5 5204.4 1 1 1 1 1 1 1 1 1 1 2354 1026 2066 2186 2624 2624 1754 KGGSWIQEINVAEK 14 Phospho (STY) _KGGS(ph)WIQEINVAEK_ KGGS(1)WIQEINVAEK KGGS(145.75)WIQEINVAEK 0 0 1 1 P78527 P78527 P78527 PRKDC DNA-dependent protein kinase catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.433654785156 3 546.934422 1637.78144 36982.3395447709 1.852 0.0010129 419000 229.16 419000 229.16 776.432534989615 84.959 0.5804 84.959 84.692 85.273 0 51 19 4 0.930779397445447 0.00398831036584944 0.090168000806148 8.2997E-07 1 19851 145.75 98.66 1 12934000 8105.9 7241.4 8401.6 7039.3 10079 7149.6 11692 8823.5 7488.3 19073 7671.4 6839.5 8466.5 7241.8 10148 7218.4 11709 9360.5 7567 18164 1 1 1 1 1 1 1 1 1 1 2355 803 2067 2187 2625 2625 1282 KGNENQDESQTSASSCDETEIQISNQEEAER 31 Phospho (STY) _KGNENQDESQTSASS(ph)CDETEIQISNQEEAER_ KGNENQDESQT(0.002)S(0.015)AS(0.114)S(0.869)CDETEIQISNQEEAER KGNENQDES(-42.95)QT(-26.12)S(-17.53)AS(-8.82)S(8.82)CDET(-65.34)EIQIS(-157.15)NQEEAER 0 0 1 1 Q9BXS6 Q9BXS6 Q9BXS6 NUSAP1 Nucleolar and spindle-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1014.20031738281 4 899.116793 3592.43807 31922.483828169 1.0159 0.00091341 127440 114.58 127440 114.58 1014.19975912798 47.875 0.26558 47.875 47.772 48.038 0 11 8 2 0.770807206356086 0.000587535168454245 0.00597742690784398 2.4483E-18 1 11113 241.09 229.44 7 13034000 1643.4 1253.8 1848.4 1539.5 1378.3 2105.3 1409 1674.4 1159 9366.5 1555.9 1186.1 1843.8 1572.4 1426.7 2097.2 1425.9 1978.5 1154.2 8858.4 1 1 1 1 1 1 1 1 1 1 2356 1866 2068 2188 2626 2626 3402 KGNSPNSEPPTPK 13 Phospho (STY) _KGNS(ph)PNSEPPTPK_ KGNS(0.939)PNS(0.061)EPPTPK KGNS(11.91)PNS(-11.91)EPPT(-81.61)PK 0 0 1 1 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.385314941406 3 478.220451 1431.63952 37419.6453017001 2.5238 0.0012069 479200 229.16 479200 229.16 707.383618386217 38.579 1.478 38.579 38.325 39.803 7.1054E-15 122 50 3 0.970187465547245 0.00337338131405075 0.0471244154940139 6.3784E-07 1 8729 144.5 117.54 3 34475000 29054 26462 30713 25326 23419 29846 25455 27823 27098 5798.7 27499 24991 30745 26146 24227 29700 25859 28161 26668 6104.1 1 1 1 1 1 1 1 1 1 1 2357 624 2069 2189 2627 2627 1028 KGPGQPSSPQR 11 Phospho (STY) _KGPGQPSS(ph)PQR_ KGPGQPS(0.012)S(0.988)PQR KGPGQPS(-19.15)S(19.15)PQR 0 0 1 1 O95400 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.634338378906 3 406.859076 1217.5554 41269.3331515304 1.0807 0.00043969 375500 152.78 375500 152.78 559.634320374189 26.96 0.52562 26.96 26.74 27.266 0 67 17 6 0.897143315059014 0.0175305434020958 0.120473103281285 5.5672E-05 1 5995 128.63 102.08 2 241010000 29607 40733 30247 46090 31576 29873 34919 36314 46259 3095.1 28019 38509 30442 46736 32023 30754 35695 36269 45163 3754.9 1 1 1 1 1 1 1 1 1 1 2358 247 2070 2190 2628 2628 418 KGPGQPSSPQRLDR 14 Phospho (STY) _KGPGQPSS(ph)PQRLDR_ KGPGQPS(0.087)S(0.913)PQRLDR KGPGQPS(-10.19)S(10.19)PQRLDR 0 0 1 2 O95400 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.706604003906 3 534.929782 1601.76752 37466.5520078656 1.7233 0.00092184 285600 152.78 285600 152.78 687.705318888344 32.098 0.6513 32.098 31.791 32.442 0 91 21 6 0.991018144630897 0.00693338550092806 0.204201041576791 0.00024899 1 7139 107.91 87.092 2 100310000 17682 18214 18030 18416 16930 16817 19663 20262 18670 3284.9 16733 17207 18127 18871 17284 16977 19857 20290 18464 3562.1 1 1 1 1 1 1 1 1 1 1 2359 247 2071 2191 2629 2629 418 KGPGRPTGSK 10 Phospho (STY) _KGPGRPT(ph)GSK_ KGPGRPT(0.744)GS(0.256)K KGPGRPT(4.63)GS(-4.63)K 0 0 1 2 P26583 P26583 P26583 HMGB2 High mobility group protein B2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 439.009613037109 4 266.886666 1063.51756 47334.5860072856 0.75677 0.00020197 643990 171.87 643990 171.87 438.75892288389 29.311 0.72995 29.311 29.076 29.806 0 78 24 5 0.886368761656597 0.0128654177083139 0.162442270144862 0.012316 1 6513 70.332 47.096 2 90881000 42676 72562 44242 72964 107110 40781 108510 77690 81041 3934 40389 68549 45232 74375 104980 42784 109630 76617 81128 5502.3 1 1 1 1 1 1 1 1 1 1 2360 482 2072 2192 2630 2630 4433 KGQGGAGAGDDEEED 15 Unmodified _KGQGGAGAGDDEEED_ 0 0 0 1 P46781 P46781 P46781 RPS9 40S ribosomal protein S9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 946.947509765625 2 717.784406 1433.55426 31989.9810261796 2.0892 0.0014996 319260 229.16 319270 229.16 946.947312990692 27.707 1.0837 27.707 27.293 28.377 -3.5527E-15 126 37 7 0.969250007817139 0.00413402486232799 0.0654092042348943 5.407E-07 1 6131 149 142.9 1 730490000 24381 21683 25076 19840 16404 23311 18335 20462 21544 30.593 23073 20473 25107 20539 17190 23175 18658 20636 21121 502.37 1 1 1 1 1 1 1 1 1 1 2361 613 2073 2193 2631 2631 KGQGGAGAGDDEEED 15 Unmodified _KGQGGAGAGDDEEED_ 0 0 0 1 P46781 P46781 P46781 RPS9 40S ribosomal protein S9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.638305664063 3 478.858696 1433.55426 38807.4304067334 2.07 0.00099125 319040 152.78 319040 152.78 631.634600269326 27.707 1.6067 27.707 27.41 29.016 -3.5527E-15 130 47 6 0.752041923167099 0.00238857134060745 0.0245685137247352 0.0002624 1 6248 83.729 71.998 1 565070000 8605.6 11284 11383 14236 12540 10700 13517 12264 11592 3684.6 8153.5 10676 11319 14380 12669 10909 13659 12352 11519 3753.3 1 1 1 1 1 1 1 1 1 1 2362 613 2073 2193 2632 2632 KGSFGLPGQGDFLR 14 Phospho (STY) _KGS(ph)FGLPGQGDFLR_ KGS(1)FGLPGQGDFLR KGS(59.57)FGLPGQGDFLR 0 0 1 1 Q9BZ72 Q9BZ72 Q9BZ72 PITPNM2 Membrane-associated phosphatidylinositol transfer protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.027770996094 3 520.251974 1557.73409 43477.9356149438 1.6881 0.00087826 293660 152.78 293660 152.78 673.028028854097 84.284 0.50755 84.284 84.044 84.552 0 24 17 2 0.659556026736995 0.000650419774297135 0.00890916892659932 0.023435 1 19706 59.574 43.211 1 9917900 7753.8 6275.2 7562.4 4736.9 9684.9 7286.6 9293.4 7595.3 5499.7 12929 7336.4 5919.2 7651.1 4998.6 9693.8 7218.1 9374.8 7996.3 5587.4 12350 1 1 1 1 1 1 1 1 1 1 2363 1874 2074 2194 2633 2633 3412 KGSFSALVGR 10 Phospho (STY) _KGS(ph)FSALVGR_ KGS(0.792)FS(0.208)ALVGR KGS(5.81)FS(-5.81)ALVGR 0 0 1 1 Q13619 Q13619 Q13619 CUL4A Cullin-4A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 520.629028320313 3 367.853263 1100.53796 43630.933388517 1.3035 0.00047948 415320 152.78 415320 152.78 520.628599997304 66.476 0.80704 66.476 66.171 66.978 0 93 27 5 0.992096291138735 0.00471775337356883 0.0600069853132656 1.4903E-09 1 15579 176.56 136.08 2 94143000 15983 8057 16330 6981.1 26019 15273 24989 15661 7260.3 804.62 15125 7605.1 16540 7366.9 25800 14945 25001 15718 7915.7 1120.1 1 1 1 1 1 1 1 1 1 1 2364 974 2075 2195 2634 2634 1650 KGSITEYTAAEEK 13 Phospho (STY) _KGS(ph)ITEYTAAEEK_ KGS(0.984)IT(0.016)EYTAAEEK KGS(17.97)IT(-17.97)EY(-58.13)T(-53.02)AAEEK 0 0 1 1 Q12982 Q12982 Q12982 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.393310546875 3 502.895633 1505.66507 36354.8265928026 2.2247 0.0011188 455690 229.16 455690 229.16 732.058271823827 58.638 0.95805 58.638 58.349 59.307 0 121 32 6 0.761588731103175 0.00632221902683095 0.0669031126633294 0.00018369 1 13793 103.99 69.894 4 315830000 40069 28305 42604 31509 40168 48809 37647 47324 36822 10987 37925 26757 42720 32435 40870 48154 38420 47858 36368 11441 1 1 1 1 1 1 1 1 1 1 2365 917 2076 2196 2635 2635 1512 KGSPVSEIGWETPPPESPR 19 Phospho (STY) _KGSPVSEIGWETPPPES(ph)PR_ KGSPVSEIGWET(0.003)PPPES(0.997)PR KGS(-92.29)PVS(-91.05)EIGWET(-24.59)PPPES(24.59)PR 0 0 1 1 Q13884 Q13884 Q13884 SNTB1 Beta-1-syntrophin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 863.780212402344 3 710.668293 2128.98305 34170.9798970323 1.8976 0.0013486 214980 152.78 214980 152.78 863.779528704947 70.923 0.92136 70.923 70.655 71.576 0 60 31 3 0.56486718007114 0.00320470730979843 0.0396170365826264 4.8585E-05 1 16676 116.2 104.46 4 42957000 17757 9367 17736 9367.5 7869.4 18613 7401.3 16330 11909 66927 16803 8848.7 17739 9766.8 8566.1 18342 7679.8 18485 11559 63398 1 1 1 1 1 1 1 1 1 1 2366 981 2077 2197 2636 2636 1657 KGSQITQQSTNQSR 14 Phospho (STY) _KGS(ph)QITQQSTNQSR_ KGS(0.817)QIT(0.183)QQSTNQSR KGS(6.5)QIT(-6.5)QQS(-51.54)T(-61.86)NQS(-93.29)R 0 0 1 1 P50750 P50750 P50750 CDK9 Cyclin-dependent kinase 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.366943359375 3 548.256335 1641.74718 36918.0614182379 2.046 0.0011217 278660 152.78 278660 152.78 701.366253724676 31.426 0.29172 31.426 31.269 31.561 0 25 9 3 0.980615802351075 0.00197332341573647 0.0261149127711255 5.4225E-05 1 7028 129.51 113.01 5 13247000 9320.1 9713.6 8986.7 9245.4 7274.4 9339.3 8504.3 9531 9226.3 2849.7 8817.9 9173.5 9049.6 9522.9 7501.3 9364.8 8617.4 9638.7 9073 2903.9 1 1 1 1 1 1 1 1 1 1 2367 669 2078 2198 2637 2637 1126 KGSSGNASEVSVACLTER 18 Phospho (STY) _KGSS(ph)GNASEVSVACLTER_ KGS(0.3)S(0.699)GNAS(0.001)EVSVACLTER KGS(-3.67)S(3.67)GNAS(-28.92)EVS(-59.42)VACLT(-118.02)ER 0 0 1 1 Q69YQ0 Q69YQ0 Q69YQ0 SPECC1L Cytospin-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.732604980469 3 644.622466 1930.84557 34957.2132526968 1.7127 0.001104 237000 152.78 237000 152.78 797.732504922732 60.461 0.49106 60.461 60.194 60.685 0 62 16 5 0.893226843925816 0.00220039469410809 0.0143019559781232 2.2076E-07 1 14139 148.1 119.69 5 57018000 13355 13998 14136 15221 13611 13724 15326 14679 14706 12266 12640 13230 14186 15529 13867 13858 15501 15056 14537 11890 1 1 1 1 1 1 1 1 1 1 2368 1233 2079 2199 2638 2638 2176 KGSSPKPK 8 Phospho (STY) _KGS(ph)SPKPK_ KGS(0.5)S(0.5)PKPK KGS(0)S(0)PKPK 0 0 1 2 Q9UKJ3 Q9UKJ3 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.042907714844 3 303.491554 907.452832 40497.8960308048 2.4713 0.00075001 1006800 305.55 1006800 305.55 609.04286160886 32.533 0.37988 32.533 32.356 32.736 0 29 12 3 0.390772777186748 0.000592950423272809 0.00797595476049951 0.043726 1 7309 52.79 27.935 2 11555000 13214 13395 13741 12900 14392 17196 15376 15590 13428 2451.1 12506 12651 13816 13344 14579 17029 15551 15774 13332 2668.8 1 1 1 1 1 1 1 1 1 1 2369 2173 2080 2200 2639 2639 3917;3918 KGSSPSR 7 Phospho (STY) _KGSS(ph)PSR_ KGS(0.31)S(0.687)PS(0.003)R KGS(-3.46)S(3.46)PS(-23.04)R 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 419.564178466797 3 266.78837 797.343282 47835.8863475041 0.55967 0.00014931 572650 152.78 572650 152.78 419.563960341281 23.104 0.34547 23.104 22.949 23.295 0 30 11 4 0.939806732766444 0.0102138870082421 0.181750314357515 0.023865 1 5183 58.917 39.823 3 9760800 15128 17833 15816 17842 15538 17301 14463 17312 20512 4675.6 14318 16846 15881 18310 15775 17375 14939 17506 19982 4803.3 1 1 1 1 1 1 1 1 1 1 2370 1436 2081 2201 2640 2640 2634 KGSSSQAPASK 11 Phospho (STY) _KGS(ph)SSQAPASK_ KGS(0.938)S(0.044)S(0.018)QAPASK KGS(13.32)S(-13.32)S(-17.18)QAPAS(-65.59)K 0 0 1 1 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 908.001831054688 2 564.25826 1126.50197 32579.9153517806 2.8334 0.0015987 609200 343.74 609200 343.74 908.001943469251 31.372 0.32099 31.372 31.181 31.502 0 17 10 2 0.943857319574267 0.000195955242274471 0.00633387535864185 0.00013287 1 7024 123.76 76.456 4 5433100 12504 1821.9 11674 1971.1 5258.5 12959 5293 7015.3 2328.5 1175.8 11828 1721.9 11724 2191.3 5712.8 12427 5305 7302.6 2423.2 1269.5 1 1 1 1 1 1 1 1 1 1 2371 1944 2082 2202 2641 2641 3528 KGSVSHDTVQPR 12 Phospho (STY) _KGS(ph)VSHDTVQPR_ KGS(0.992)VS(0.008)HDTVQPR KGS(20.97)VS(-20.97)HDT(-40.35)VQPR 0 0 1 1 Q96D71 Q96D71 Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.997131347656 3 464.220674 1389.64019 39959.8863552581 2.1087 0.00097891 329100 152.78 329100 152.78 616.996156725587 30.116 0.39054 30.116 29.954 30.344 0 29 12 3 0.571813125845752 0.00115681716481176 0.0263576942208488 0.047344 1 6746 43.794 29.104 3 9212200 9737.8 11198 10617 12587 10426 12905 17943 17635 10509 3274.4 9217.8 10586 10652 12844 10691 12987 17700 17604 10684 3491.4 1 1 1 1 1 1 1 1 1 1 2372 1666 2083 2203 2642 2642 3064 KGSVVNVNPTNTRPQSDTPEIR 22 Phospho (STY) _KGS(ph)VVNVNPTNTRPQSDTPEIR_ KGS(1)VVNVNPTNTRPQSDTPEIR KGS(70.66)VVNVNPT(-75.64)NT(-70.66)RPQS(-85.75)DT(-103.42)PEIR 0 0 1 2 O95819 O95819 O95819 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.640930175781 4 623.059059 2488.20713 36565.0012938401 1.7091 0.0010649 183900 114.58 183900 114.58 737.891820614954 52.323 0.4779 52.323 52.101 52.578 0 49 16 5 0.90036430118441 0.00180840309908281 0.0270384358241615 9.3908E-12 1 12164 182.07 161.17 5 24958000 11903 9665.6 11729 10757 11125 10188 11121 9491.2 9660.5 4162.5 11263 9137 11813 10969 11324 10237 11280 9672.8 9594 4139.2 1 1 1 1 1 1 1 1 1 1 2373 266 2084 2204 2643 2643 444 KGSWSER 7 Phospho (STY) _KGSWS(ph)ER_ KGS(0.139)WS(0.861)ER KGS(-7.94)WS(7.94)ER 0 0 1 1 Q96N67 Q96N67 Q96N67 DOCK7 Dedicator of cytokinesis protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 463.242370605469 3 310.467408 928.380396 46401.252463354 0.02427 7.5349E-06 492080 152.78 492080 152.78 463.242943070324 39.571 0.55252 39.571 39.336 39.889 0 41 18 3 0.880942795647294 0.00283336959991781 0.0356395968975433 0.009758 1 8974 81.263 36.381 2 19423000 20365 25602 21132 24740 45578 21677 44684 31894 26370 2597.3 19273 24181 21532 25405 44779 21998 45026 31674 26796 3183.8 1 1 1 1 1 1 1 1 1 1 2374 1720 2085 2205 2644 2644 3164 KHDSGAADLER 11 Phospho (STY) _KHDS(ph)GAADLER_ KHDS(1)GAADLER KHDS(81.32)GAADLER 0 0 1 1 Q9NX55 Q9NX55 Q9NX55 HYPK Huntingtin-interacting protein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.629943847656 3 426.853991 1277.54014 40257.9903955884 2.0425 0.00087187 357910 152.78 357910 152.78 579.62970673771 30.995 0.53874 30.995 30.819 31.358 3.5527E-15 41 17 3 0.975105426060767 0.00148657442232103 0.0454961197238965 0.007507 1 6954 81.317 42.53 1 6557600 8819 11359 8605.2 11694 8433.7 9226.7 7988 9434.1 12035 2806.7 8344.2 10732 8674.3 11947 8566.1 9366.4 8263.3 9539.6 11703 2861.1 1 1 1 1 1 1 1 1 1 1 2375 2060 2086 2206 2645 2645 3727 KHSPDLR 7 Phospho (STY) _KHS(ph)PDLR_ KHS(1)PDLR KHS(82.17)PDLR 0 0 1 1 Q8IWI9 Q8IWI9 Q8IWI9 MGA MAX gene-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 464.258270263672 3 311.48317 931.42768 46240.5737178255 0.51047 0.000159 490480 152.78 490480 152.78 464.258354008664 28.878 0.67378 28.878 28.666 29.34 -3.5527E-15 42 22 3 0.939585404788444 0.002719962660838 0.0234771530385854 0.0093917 1 6424 82.171 54.842 1 20757000 18359 21002 20058 21299 12605 20379 12707 16684 21879 2485 17378 19841 20008 21837 13242 20426 13181 16953 21199 2726.1 1 1 1 1 1 1 1 1 1 1 2376 1416 2087 2207 2646 2646 2579 KHSPSPPPPTPTESR 15 Phospho (STY) _KHS(ph)PSPPPPTPTESR_ KHS(0.5)PS(0.5)PPPPTPTESR KHS(0)PS(0)PPPPT(-46.69)PT(-57.86)ES(-72.3)R 0 0 1 1 Q92922 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.378601074219 3 565.601443 1693.7825 37546.2792858751 2.3581 0.0013337 270110 152.78 270110 152.78 718.376958991662 29.956 0.67927 29.956 29.665 30.344 0 61 22 4 0.969163447613336 0.0008265856297113 0.0130659484249114 0.006356 1 6651 86.625 71.237 5 13687000 9874 8736.7 9367.9 8724.7 8535.4 9945 10332 10433 9219.3 2864.7 9341.4 8253.2 9455.2 8978.6 8735.2 9925.5 10401 10532 9143.9 2938.9 1 1 1 1 1 1 1 1 1 1 2377 1631 2088 2208 2647 2647 3013;3014 KHSPSPPPPTPTESR 15 2 Phospho (STY) _KHS(ph)PS(ph)PPPPTPTESR_ KHS(1)PS(0.992)PPPPT(0.004)PT(0.003)ESR KHS(42.34)PS(23.54)PPPPT(-23.54)PT(-25.41)ES(-34.68)R 0 0 2 1 Q92922 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.368347167969 3 592.256886 1773.74883 36335.7958149628 2.0208 0.0011968 257950 152.78 257960 152.78 745.366782761086 31.681 3.1447 31.681 30.7 33.845 0 463 107 6 0.998717122062044 0.0359535609129691 0.993202077946723 0.0029652 3 7158 92.714 77.838 10 281230000 142680 151650 141650 158880 165240 145790 151360 160280 181630 32340 135000 143300 142950 162480 166130 146960 155570 161190 177930 34161 3 3 3 3 3 3 3 3 3 3 2378 1631 2088 2209 2648;2649;2650 2649 3013;3014 KHSQTDLVSR 10 Phospho (STY) _KHS(ph)QTDLVSR_ KHS(0.904)QT(0.096)DLVSR KHS(9.76)QT(-9.76)DLVS(-75.71)R 0 0 1 1 O14683 O14683 O14683 TP53I11 Tumor protein p53-inducible protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.310302734375 3 417.534481 1249.58161 41392.5758167151 2.0209 0.00084378 365900 152.77 365900 152.78 570.309392635957 31.438 1.1152 31.438 31.181 32.297 0 83 37 3 0.9519968444256 0.00820952407032148 0.120155563815463 1.4231E-09 1 7020 178.22 134.54 3 77113000 37535 14793 40990 13234 13390 39762 15582 23157 12765 5463.4 35530 13965 40742 14110 15246 38473 15679 24037 12715 5680.4 1 1 1 1 1 1 1 1 1 1 2379 62 2089 2210 2651 2651 101 KICTLPSPPSPLASLAPVADSSTR 24 Phospho (STY) _KICTLPSPPS(ph)PLASLAPVADSSTR_ KICTLPS(0.002)PPS(0.998)PLASLAPVADSSTR KICT(-50.51)LPS(-28.04)PPS(28.04)PLAS(-42.47)LAPVADS(-71.24)S(-71.24)T(-71.24)R 0 0 1 1 Q9UER7 Q9UER7 Q9UER7 DAXX Death domain-associated protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1002.20727539063 3 849.095906 2544.26589 31793.5004654709 1.9968 0.0016955 179930 152.77 179930 152.78 1002.20473467247 92.83 0.7805 92.83 92.31 93.09 -1.4211E-14 72 26 4 0.468440537799027 0.000962330034706793 0.0328233739665361 0.00051043 1 21546 100.42 85.333 7 21572000 2409.6 4420.8 3503.3 3582.4 2886.1 2551.8 2409.4 4023.1 4442.8 27540 2284.2 4171.4 3456.3 3712.9 2960.5 2674.1 2531.1 4808.2 4297.5 26025 1 1 1 1 1 1 1 1 1 1 2380 2135 2090 2211 2652 2652 3840 KIDAGTMAEPSASPSK 16 Phospho (STY) _KIDAGTMAEPS(ph)ASPSK_ KIDAGTMAEPS(0.497)AS(0.497)PS(0.007)K KIDAGT(-52.08)MAEPS(0)AS(0)PS(-18.81)K 0 0 1 1 Q8IXQ3 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.420471191406 3 557.254944 1668.743 NaN NaN NaN NaN NaN NaN NaN NaN 55.694 1 55.694 55.194 56.194 0 NaN NaN NaN 0.0079649 1 13001 91.729 73.59 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2381 1427 2091 2212 2653 2653 2599;2600 KIESFGSPK 9 Phospho (STY) _KIESFGS(ph)PK_ KIES(0.005)FGS(0.995)PK KIES(-23)FGS(23)PK 0 0 1 1 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 587.672302246094 3 358.174002 1071.50018 40814.5779535359 1.9148 0.00068583 639810 229.16 639810 229.16 587.336526965871 59.572 0.6594 59.572 59.307 59.967 -7.1054E-15 68 22 4 0.960078057502609 0.00468868376212534 0.0737737693472911 0.00048584 1 13938 101.32 50.228 2 47701000 18340 33213 15347 33031 17434 16441 16295 21873 36998 3796.7 17343 31374 15649 33660 17572 17296 17209 21844 35628 4081.3 1 1 1 1 1 1 1 1 1 1 2382 655 2092 2213 2654 2654 1096 KINSSPNVNTTASGVEDLNIIQVTIPDDDNER 32 Phospho (STY) _KINSS(ph)PNVNTTASGVEDLNIIQVTIPDDDNER_ KINS(0.233)S(0.755)PNVNT(0.012)TASGVEDLNIIQVTIPDDDNER KINS(-5.1)S(5.1)PNVNT(-17.94)T(-35.43)AS(-59.72)GVEDLNIIQVT(-225.35)IPDDDNER 0 0 1 1 P78347 P78347 P78347 GTF2I General transcription factor II-I MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1336.67846679688 3 1183.56325 3547.66793 27336.8462630952 1.8699 0.0022132 129080 152.78 129080 152.78 1336.67302395401 94.101 0.69403 94.101 93.762 94.456 0 109 23 5 0.754268415892873 0.0049897513432007 0.21162034042254 1.7399E-25 2 21854 262.11 248.76 6 72629000 1523 10287 2375.4 8938.7 1903.6 1069.4 3028.3 6991.8 12188 96316 1444.3 9709.9 2339.3 9133.8 1984.1 1678.8 3279.4 9686 11637 90855 2 2 2 2 2 2 2 2 2 2 2383 798 2093 2214 2655;2656 2656 1274 KINSSPNVNTTASGVEDLNIIQVTIPDDDNER 32 Phospho (STY) _KINSS(ph)PNVNTTASGVEDLNIIQVTIPDDDNER_ KINS(0.18)S(0.82)PNVNTTASGVEDLNIIQVTIPDDDNER KINS(-6.59)S(6.59)PNVNT(-56.58)T(-82.67)AS(-125.76)GVEDLNIIQVT(-339.86)IPDDDNER 0 0 1 1 P78347 P78347 P78347 GTF2I General transcription factor II-I MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1002.75720214844 4 887.924259 3547.66793 31125.0907256979 1.8453 0.0016385 129040 114.58 129050 114.58 1003.00712380502 94.094 1.4357 94.094 93.562 94.998 -1.4211E-14 173 49 5 0.989206331643549 0.0311872661814351 1 2.0502E-57 1 21861 383.79 365.05 6 256480000 1987.2 1779 805.06 1848.4 1986.7 837.55 640.25 2753.4 2197.6 56163 1875.9 1681 890.54 1877.4 1928.8 1014.4 759.02 4379.9 2102.4 52948 1 1 1 1 1 1 1 1 1 1 2384 798 2093 2214 2657 2657 1274 KIPEPSPVTR 10 Phospho (STY) _KIPEPS(ph)PVTR_ KIPEPS(0.966)PVT(0.034)R KIPEPS(14.51)PVT(-14.51)R 0 0 1 1 Q7Z4S6 Q7Z4S6 Q7Z4S6 KIF21A Kinesin-like protein KIF21A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 554.651794433594 3 401.875956 1202.60604 43087.9755030164 1.0083 0.00040521 380150 152.78 380160 152.78 554.651125248332 50.789 0.74576 50.789 50.449 51.195 7.1054E-15 55 25 4 0.447673070149697 0.0012183313085966 0.0280359783431546 0.0096637 1 11803 74.853 50.009 2 17676000 11449 24484 11743 24987 10186 12852 11838 15534 25461 2384.9 10835 23132 11792 25430 10465 13462 12344 15550 24544 2605.2 1 1 1 1 1 1 1 1 1 1 2385 1342 2094 2215 2658 2658 2421 KIQALQQQADEAEDR 15 Unmodified _KIQALQQQADEAEDR_ 0 0 0 1 P67936 P67936 P67936 TPM4 Tropomyosin alpha-4 chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.737854003906 3 581.627107 1741.85949 37662.0765587439 1.8188 0.0010579 262670 152.78 262670 152.78 734.736894507358 57.073 0.58059 57.073 56.783 57.363 7.1054E-15 55 19 4 0.697983960631871 0.0029401749663395 0.017777598594436 7.6153E-07 1 13349 153.95 135.36 1 21916000 23199 13824 23597 15976 17808 25139 19199 19680 17356 16651 21954 13071 23669 16420 18431 24752 19425 20454 17203 16134 1 1 1 1 1 1 1 1 1 1 2386 787 2095 2216 2659 2659 KISENSYSLDDLEIGPGQLSSSTFDSEK 28 Phospho (STY) _KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEK_ KIS(0.884)ENS(0.115)YS(0.001)LDDLEIGPGQLSSSTFDSEK KIS(8.86)ENS(-8.86)Y(-79.59)S(-27.88)LDDLEIGPGQLS(-172.26)S(-179.21)S(-185.93)T(-192.39)FDS(-208.48)EK 0 0 1 1 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.482727050781 4 782.356418 3125.39657 31575.6638313783 1.8142 0.0014193 219690 171.87 219690 171.87 954.72981690873 96.383 0.60882 96.383 96.087 96.695 0 88 20 7 0.850878964362354 0.00411873039105642 0.0539796529719183 6.8814E-18 1 22385 231.54 215.03 9 25267000 1569.8 2413.9 1884.8 1921.2 1875.2 1681.1 1935.9 2739.9 2041.7 42493 1486.6 2277.5 1879.8 1998.8 1904.5 1789.1 1970.6 3987.7 2010 40076 1 1 1 1 1 1 1 1 1 1 2387 2144 2096 2217 2660 2660 3859 KISENSYSLDDLEIGPGQLSSSTFDSEK 28 Phospho (STY) _KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEK_ KIS(0.687)ENS(0.264)YS(0.049)LDDLEIGPGQLSSSTFDSEK KIS(4.16)ENS(-4.16)Y(-73.63)S(-11.44)LDDLEIGPGQLS(-144.55)S(-145.79)S(-153.57)T(-161.14)FDS(-179.22)EK 0 0 1 1 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1272.64245605469 3 1042.80613 3125.39657 28118.3429336201 1.8897 0.0019706 219760 229.16 219760 229.17 1272.63721883784 96.346 0.3475 96.346 96.202 96.549 0 16 11 2 0.919838359621869 0.00140871949134211 0.0200695944246468 1.1526E-11 1 22424 183.7 163.25 9 10127000 592.97 799.82 1050.6 1449.1 1482 434.41 1390 1338.1 1185.4 38853 562.81 759.26 1036.7 1432 1476.9 565.22 1413.8 2477.9 1178.3 36616 1 1 1 1 1 1 1 1 1 1 2388 2144 2096 2217 2661 2661 3859 KISENSYSLDDLEIGPGQLSSSTFDSEKNESR 32 Phospho (STY) _KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEKNESR_ KIS(1)ENSYSLDDLEIGPGQLSSSTFDSEKNESR KIS(35.79)ENS(-35.79)Y(-102.4)S(-62.73)LDDLEIGPGQLS(-207.62)S(-211.28)S(-214.3)T(-215.09)FDS(-218.72)EKNES(-230.57)R 0 0 1 2 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1076.29077148438 4 903.911083 3611.61523 29481.4624765112 1.4941 0.0013505 190140 171.87 190150 171.87 1076.28409591056 89.307 0.55188 89.307 88.939 89.491 0 40 18 3 0.896855577576956 0.00215179336186085 0.0142184441105914 3.206E-19 2 20823 249.23 214.41 10 20457000 0 4497.2 4405.1 3570 5324.1 3590.5 4503 6552.2 5622.6 90939 0 4243.1 4192.1 3722.4 5338.1 3806.4 4653.8 9197.8 5500.4 85781 0 2 2 2 2 2 2 2 2 2 2389 2144 2097 2218 2662;2663 2663 3859 KISGTTALQEALK 13 Phospho (STY) _KIS(ph)GTTALQEALK_ KIS(0.998)GT(0.002)TALQEALK KIS(26.6)GT(-26.6)T(-47.11)ALQEALK 0 0 1 1 P30622;Q9UDT6 P30622 P30622 CLIP1;CLIP2 CAP-Gly domain-containing linker protein 1;CAP-Gly domain-containing linker protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.087280273438 3 480.588363 1438.74326 38232.746779584 2.2071 0.0010607 476840 229.16 476840 229.16 709.751564142624 80.826 0.58656 80.826 80.491 81.077 0 55 19 4 0.945828312960533 0.0031525437657362 0.0276605634650683 8.4024E-16 1 18909 216.16 170.37 3 19867000 9176.7 9135.4 9268.1 8423.8 17908 10393 19596 13981 10470 9347.1 8683.9 8625.8 9436.2 8724.4 17678 10392 19616 14166 10717 9125 1 1 1 1 1 1 1 1 1 1 2390 518 2098 2219 2664 2664 846 KISPPSYAR 9 Phospho (STY) _KIS(ph)PPSYAR_ KIS(0.988)PPS(0.012)YAR KIS(19.13)PPS(-19.13)Y(-40.46)AR 0 0 1 1 Q8N2M8 Q8N2M8 Q8N2M8 CLASRP CLK4-associating serine/arginine rich protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.935363769531 2 549.770806 1097.52706 36641.3506921805 1.4744 0.00081059 416830 229.16 416840 229.16 778.933594220212 52.128 1.6468 52.128 51.108 52.755 0 125 56 3 0.96278649749781 0.000727888822543584 0.0118578752198534 0.020018 1 12108 66.84 36.111 3 20870000 18404 21501 17650 21794 25850 18773 24540 23366 22607 13912 17412 20313 17914 22311 25728 19035 24989 23679 22388 13640 1 1 1 1 1 1 1 1 1 1 2391 1460 2099 2220 2665 2665 2704 KISVVSATK 9 Phospho (STY) _KIS(ph)VVSATK_ KIS(0.989)VVS(0.011)ATK KIS(19.38)VVS(-19.38)AT(-47.7)K 0 0 1 1 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 850.521362304688 2 506.775557 1011.53656 34257.8986649176 2.4416 0.0012373 678300 343.74 678300 343.75 850.519525405108 58.631 0.41285 58.631 58.433 58.846 0 34 13 3 0.95572513783218 0.00120863259969004 0.0280778944605413 0.00035614 1 13729 121.66 73.371 3 25878000 37290 21024 38197 18073 34640 38022 37642 29717 21482 14913 35290 19843 38372 19058 35390 37145 37730 30580 21882 14730 1 1 1 1 1 1 1 1 1 1 2392 2180 2100 2221 2666 2666 3931 KITIADCGQLE 11 Unmodified _KITIADCGQLE_ 0 0 0 1 P62937 P62937 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.984252929688 2 624.318645 1246.62274 35301.2706064627 2.0533 0.0012819 367060 229.16 367060 229.16 853.48219943314 67.3 0.55485 67.3 67.09 67.645 0 37 18 3 0.958198496687109 0.00103614106080363 0.0634734687235398 0.018856 1 15799 67.726 38.577 1 10799000 12407 10834 13532 12242 11744 14166 11080 12443 13207 15451 11744 10242 13538 12515 12016 14121 11368 13013 12941 14837 1 1 1 1 1 1 1 1 1 1 2393 774 2101 2222 2667 2667 KKEEPSQNDISPK 13 Phospho (STY) _KKEEPSQNDIS(ph)PK_ KKEEPSQNDIS(1)PK KKEEPS(-47.62)QNDIS(47.62)PK 0 0 1 2 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.135070800781 3 527.250299 1578.72907 34124.0686136436 2.4892 0.0013124 579520 305.55 579520 305.55 833.134715015886 41.204 0.85879 41.204 40.911 41.77 0 106 29 4 0.993647502353243 0.00340025407846927 0.0626545280607038 9.1641E-07 1 9360 143.39 114.43 2 47732000 33981 26916 36860 29073 12542 34782 11939 28104 32146 26045 32166 25439 36652 29811 14174 34574 12736 29234 30861 25175 1 1 1 1 1 1 1 1 1 1 2394 2012 2102 2223 2668 2668 3655 KKEEPSQNDISPK 13 Phospho (STY) _KKEEPSQNDIS(ph)PK_ KKEEPSQNDIS(1)PK KKEEPS(-81.69)QNDIS(81.69)PK 0 0 1 2 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.100891113281 4 395.689543 1578.72907 39267.6281543306 2.1066 0.00083357 579150 229.16 579150 229.16 625.102897758916 41.165 1.2795 41.165 40.857 42.136 0 209 44 6 0.904427431562388 0.00322342882212606 0.0260797106941985 1.2979E-06 1 9554 138.55 112.59 2 269130000 18979 20630 20732 17396 10891 23843 10475 15859 21998 3559 17965 19470 20654 18162 11638 23518 10998 16324 21217 3718.3 1 1 1 1 1 1 1 1 1 1 2395 2012 2102 2223 2669 2669 3655 KKEPAITSQNSPEAR 15 Phospho (STY) _KKEPAITSQNS(ph)PEAR_ KKEPAITSQNS(1)PEAR KKEPAIT(-70.47)S(-62.75)QNS(62.75)PEAR 0 0 1 2 P23193 P23193 P23193 TCEA1 Transcription elongation factor A protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.448486328125 3 579.284002 1734.83018 34372.2619055327 2.6366 0.0015274 395600 229.16 395600 229.16 808.78129811309 38.313 1.1588 38.313 38.123 39.282 0 146 39 7 0.993944616289613 0.00939928652175116 0.162965104712874 1.0012E-22 2 8663 269.08 233.25 3 668000000 117040 88436 118960 85552 94282 111000 102970 105050 92508 12480 110760 83526 119390 88427 97248 110070 104110 105980 91721 14183 2 2 2 2 2 2 2 2 2 2 2396 463 2103 2224 2670;2671 2671 759 KKEQSEVSVSPR 12 Phospho (STY) _KKEQSEVSVS(ph)PR_ KKEQSEVS(0.02)VS(0.98)PR KKEQS(-59.97)EVS(-16.84)VS(16.84)PR 0 0 1 2 Q7L4I2 Q7L4I2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 536.053894042969 4 364.18162 1452.69737 43098.7024390578 0.68619 0.0002499 471940 171.87 471940 171.87 536.304977262783 36.732 0.6423 36.732 36.485 37.128 0 66 21 5 0.908614447806628 0.00319980683948386 0.0307647897107077 0.00015176 1 8282 101.67 84.984 3 30592000 16427 14324 14495 13196 13522 15740 12104 17147 15671 1612.6 15537 13525 14692 13659 13763 15684 12487 17193 15311 1915.3 1 1 1 1 1 1 1 1 1 1 2397 1318 2104 2225 2672 2672 2361 KKNEPEDEEEEEEEEDEDEEEEDEDEE 27 Unmodified _KKNEPEDEEEEEEEEDEDEEEEDEDEE_ 0 0 0 2 P26583 P26583 P26583 HMGB2 High mobility group protein B2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1358.23852539063 3 1128.7398 3383.19757 26751.5586709089 1.4867 0.0016781 203030 229.16 203030 229.16 1358.23652870568 43.516 1.4198 43.516 43.09 44.51 0 241 48 6 0.993354144766367 0.00579862449096994 0.0202822605287432 1.1557E-55 2 9941 395.85 383.5 1 184990000 42302 44854 50842 45179 34066 42735 39463 43971 52728 1084.8 40060 42374 50508 46329 35650 42962 40274 44091 51464 2039.1 2 2 2 2 2 2 2 2 2 2 2398 482 2105 2226 2673;2674 2673 KKNEPEDEEEEEEEEDEDEEEEDEDEE 27 Unmodified _KKNEPEDEEEEEEEEDEDEEEEDEDEE_ 0 0 0 2 P26583 P26583 P26583 HMGB2 High mobility group protein B2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1018.92956542969 4 846.80667 3383.19757 31405.9591069227 1.2864 0.0010894 202970 171.87 202970 171.87 1019.18062201807 43.473 1.0769 43.473 43.151 44.228 0 139 36 5 0.96853078503472 0.0027489818547859 0.00907363066739789 2.0015E-19 1 10024 250.05 243.72 1 106020000 8207.7 8136.1 11395 9312.8 6716 8283.6 6444.4 9236.4 9869.3 1796.7 7778.5 7692.6 11233 9473.7 7091.1 8364.3 6666.7 9282 9592.7 1905.6 1 1 1 1 1 1 1 1 1 1 2399 482 2105 2226 2675 2675 KKSPIINESR 10 Phospho (STY) _KKS(ph)PIINESR_ KKS(1)PIINESR KKS(53.98)PIINES(-53.98)R 0 0 1 2 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.050537109375 3 417.886744 1250.6384 39106.9588925843 2.4343 0.0010173 548390 229.16 548390 229.16 647.050074808605 41.302 1.0882 41.302 40.966 42.054 0 137 37 6 0.932336550798996 0.00978852871098215 0.343762973488336 3.0171E-05 1 9378 136.39 98.509 2 330520000 60552 55772 58417 53612 55179 53432 60387 57518 58343 5503 57289 52673 58915 55176 56259 53627 61163 57702 57654 6512.9 1 1 1 1 1 1 1 1 1 1 2400 963 2106 2227 2676 2676 1622 KKSPNELVDDLFK 13 Phospho (STY) _KKS(ph)PNELVDDLFK_ KKS(1)PNELVDDLFK KKS(192.55)PNELVDDLFK 0 0 1 2 Q9UNZ2 Q9UNZ2 Q9UNZ2 NSFL1C NSFL1 cofactor p47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.118774414063 4 403.955011 1611.79094 40719.7959052028 2.1249 0.00085836 567300 229.16 567300 229.16 633.368721048363 94.667 0.91564 94.667 94.253 95.168 -1.4211E-14 76 31 4 0.979774257934789 0.00150695471644408 0.0378359104442255 8.1088E-11 1 22025 192.55 157.93 1 9124900 2914.8 4886.4 3301.4 5017.5 4890.1 3211.5 6254.3 4650.4 4948.3 5995.8 2759.6 4616.8 3324.1 5114.7 4886.7 3329 6265.1 4789.6 4937.9 5753.4 1 1 1 1 1 1 1 1 1 1 2401 2210 2107 2228 2677 2677 3998 KLCQPQSTGSLLGDPAASSPPGER 24 Phospho (STY) _KLCQPQSTGSLLGDPAASS(ph)PPGER_ KLCQPQSTGSLLGDPAAS(0.013)S(0.987)PPGER KLCQPQS(-142.85)T(-134.88)GS(-118.24)LLGDPAAS(-18.79)S(18.79)PPGER 0 0 1 1 P55199 P55199 P55199 ELL RNA polymerase II elongation factor ELL MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 998.176208496094 3 845.063265 2532.16797 31663.0164252798 1.8643 0.0015755 180790 152.78 180790 152.78 998.173642239293 66.165 0.68187 66.165 65.778 66.46 0 83 22 5 0.987042735770002 0.00381291057242654 0.0366168373377506 1.8979E-24 1 15519 266.58 246.84 5 37897000 9520.2 7031.7 9631.1 6911.8 6291.2 9872 6722.2 8845.2 7563.4 13770 9009 6642 9651.6 7151.7 6588.5 9776.2 6844.9 9327.1 7427.2 13171 1 1 1 1 1 1 1 1 1 1 2402 721 2108 2229 2678 2678 1202 KLEDGPK 7 Unmodified _KLEDGPK_ 0 0 0 1 Q5VTE0;P68104 Q5VTE0 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 491.979705810547 3 262.816716 785.428318 45068.0483995622 1.5546 0.00040858 871950 229.16 871950 229.16 491.979465939947 41.832 0.45659 41.832 41.597 42.054 0 45 15 4 0.718844942609268 0.00190024201414102 0.0217125787430939 0.022429 1 9563 65.156 21.91 1 20718000 28394 29454 28995 30328 31345 29103 26217 28136 36143 1935.3 26870 27829 29181 31067 31607 29217 27205 28318 35241 2473.5 1 1 1 1 1 1 1 1 1 1 2403 788 2109 2230 2679 2679 KLEGNSPQGSNQGVK 15 Phospho (STY) _KLEGNSPQGS(ph)NQGVK_ KLEGNSPQGS(1)NQGVK KLEGNS(-56.98)PQGS(56.98)NQGVK 0 0 1 1 P61006 P61006 P61006 RAB8A Ras-related protein Rab-8A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.753723144531 3 541.589314 1621.74611 36013.8597322939 2.2502 0.0012187 423130 229.16 423130 229.16 771.086252972085 43.922 0.44142 43.922 43.639 44.08 7.1054E-15 45 14 4 0.894988624314507 0.00324628469197937 0.0672044070458744 1.9882E-10 1 10062 180.41 141.8 2 32980000 39668 13292 36945 15450 19678 33295 21896 24627 15130 7332.6 37525 12569 37151 16018 21014 32482 21997 25259 15216 7474.5 1 1 1 1 1 1 1 1 1 1 2404 745 2110 2231 2680 2680 1230 KLENSPLGEALR 12 Phospho (STY) _KLENS(ph)PLGEALR_ KLENS(1)PLGEALR KLENS(115.2)PLGEALR 0 0 1 1 Q9NX40 Q9NX40 Q9NX40 OCIAD1 OCIA domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.348266601563 3 469.572825 1405.69664 40710.4878970162 1.4124 0.0006632 325350 152.78 325350 152.78 622.34810098882 66.011 0.7123 66.011 65.748 66.46 0 66 23 4 0.797618819544659 0.00369290872203004 0.0414544432318431 0.00011104 1 15518 115.2 87.788 1 25752000 11217 17228 12653 13850 10276 11393 9676 15458 18367 6745.8 10620 16256 12628 14387 10568 11593 10116 15552 17754 6709.8 1 1 1 1 1 1 1 1 1 1 2405 2059 2111 2232 2681 2681 3726 KLESLRR 7 Phospho (STY) _KLES(ph)LRR_ KLES(1)LRR KLES(69.72)LRR 0 0 1 2 Q8N4V1 Q8N4V1 Q8N4V1 MMGT1 Membrane magnesium transporter 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.6220703125 3 327.84622 980.51683 45683.3037029242 0.44464 0.00014577 466000 152.78 466000 152.78 480.621599522562 40.895 0.59501 40.895 40.629 41.224 7.1054E-15 58 20 4 0.960170158524403 0.00306677217421348 0.0149222236623936 0.020012 1 9295 69.721 6.0964 1 58583000 19786 27730 20844 25602 13980 18311 14768 18450 30005 2380 18727 26183 20845 26300 14618 18686 15412 18573 28960 2668 1 1 1 1 1 1 1 1 1 1 2406 1469 2112 2233 2682 2682 2716 KLGAGEGGEASVSPEK 16 Phospho (STY) _KLGAGEGGEASVS(ph)PEK_ KLGAGEGGEASVS(1)PEK KLGAGEGGEAS(-39.18)VS(39.18)PEK 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 571.811584472656 4 399.688272 1594.72398 41522.7574002434 1.3381 0.00053481 430020 171.87 430020 171.87 571.560557519863 50.363 0.51956 50.363 50.156 50.675 0 62 17 4 0.989494641683778 0.00298556564386539 0.037252002219103 5.7913E-07 1 11724 140.8 113.77 2 24458000 8669.3 8673.4 8543.2 12201 6975.3 9208.7 8585.5 9845.3 11285 31282 8202.9 8213.6 8593.6 12265 7196.5 9430.8 8735.9 10793 11020 29684 1 1 1 1 1 1 1 1 1 1 2407 953 2113 2234 2683 2683 1596 KLGDVSPTQIDVSQFGSFK 19 Phospho (STY) _KLGDVS(ph)PTQIDVSQFGSFK_ KLGDVS(0.902)PT(0.098)QIDVSQFGSFK KLGDVS(9.63)PT(-9.63)QIDVS(-81.25)QFGS(-105.39)FK 0 0 1 1 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.182678222656 3 711.68031 2132.0191 32153.3359614345 2.1121 0.0015031 322000 229.16 322000 229.16 941.17883731121 93.436 0.43307 93.436 93.24 93.673 0 38 14 4 0.969776082200556 0.00163117231261407 0.0326239467991305 8.5627E-08 1 21764 162.73 138.81 4 13004000 4906.2 19485 4601.9 16403 5220.9 5297.6 4919.9 10807 21061 34200 4641.4 18389 4658.3 16852 5272.6 5939.2 5464.5 11657 20096 32454 1 1 1 1 1 1 1 1 1 1 2408 616 2114 2235 2684 2684 1014 KLGNSLLR 8 Phospho (STY) _KLGNS(ph)LLR_ KLGNS(1)LLR KLGNS(67.46)LLR 0 0 1 1 Q14980 Q14980 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.290100097656 3 327.51447 979.521581 45051.6356592709 0.3555 0.00011643 466470 152.78 466470 152.78 480.290086602563 62.364 0.5222 62.364 62.122 62.644 0 49 17 4 0.926772227810416 0.00248164119116922 0.0823678101882437 0.014011 1 14630 67.456 38.651 1 16629000 12169 10325 14126 8614.3 17905 12508 14911 12623 9439.3 5184.1 11522 9743.5 14152 9011.9 17899 12375 15172 12813 9545.8 5173.5 1 1 1 1 1 1 1 1 1 1 2409 1036 2115 2236 2685 2685 1787 KLGVSVSPSR 10 Phospho (STY) _KLGVSVSPS(ph)R_ KLGVS(0.073)VS(0.443)PS(0.485)R KLGVS(-8.24)VS(-0.39)PS(0.39)R 0 0 1 1 Q86VM9 Q86VM9 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.305847167969 3 370.528668 1108.56417 46972.2507547932 0.56427 0.00020908 412320 152.78 412320 152.78 523.304462696087 51.591 0.52316 51.591 51.312 51.835 0 43 17 4 0.667685519096901 0.00174054425358205 0.00705303218895951 0.011281 1 11979 70.272 47.552 3 28429000 13297 18926 12941 16480 15431 12735 14541 14559 18672 3982.7 12581 17865 13080 17010 15504 12963 14958 14653 18248 4087.2 1 1 1 1 1 1 1 1 1 1 2410 1380 2116 2237 2686 2686 2497;2498 KLLLDPSSPPTK 12 Phospho (STY) _KLLLDPSS(ph)PPTK_ KLLLDPS(0.132)S(0.868)PPTK KLLLDPS(-8.17)S(8.17)PPT(-39.42)K 0 0 1 1 Q6IAA8 Q6IAA8 Q6IAA8 LAMTOR1 Ragulator complex protein LAMTOR1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.744201660156 3 459.245937 1374.71598 39407.3767551164 1.9308 0.0008867 499000 229.16 499000 229.16 688.408685662471 75.687 0.68833 75.687 75.286 75.975 -1.4211E-14 46 23 3 0.82430897416943 0.0015474531313196 0.0423921683313837 0.006106 1 17741 85.734 68.854 3 7007400 8260.1 8028.1 9731.8 10156 8460.1 9501.5 7565.6 9354.1 10667 7031.7 7821.7 7596 9697.5 10288 8650.7 9564.5 7829 9600.4 10394 6837.6 1 1 1 1 1 1 1 1 1 1 2411 1238 2117 2238 2687 2687 2182 KLNDADPDDK 10 Unmodified _KLNDADPDDK_ 0 0 0 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.680908203125 3 377.515654 1129.52513 41087.7204236248 2.0914 0.00078953 607030 229.16 607030 229.16 606.679044760143 32.75 0.55415 32.75 32.586 33.14 0 42 18 3 0.957773368333406 0.00183094370164301 0.0156316493836576 0.053779 1 7324 47.261 12.373 1 17023000 15779 19077 15770 19702 13556 15928 13969 17603 19440 2178.5 14931 18025 15853 20131 13898 16159 14349 17658 18949 2458.7 1 1 1 1 1 1 1 1 1 1 2412 963 2118 2239 2688 2688 KLNLTLSPAK 10 Phospho (STY) _KLNLTLS(ph)PAK_ KLNLT(0.001)LS(0.999)PAK KLNLT(-28.9)LS(28.9)PAK 0 0 1 1 Q9UKL3 Q9UKL3 Q9UKL3 CASP8AP2 CASP8-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.048522949219 3 388.884451 1163.63153 39623.4587026009 2.3746 0.00092343 589280 229.16 589290 229.16 618.047508815201 75.361 0.48208 75.361 75.09 75.572 -1.4211E-14 53 16 4 0.980306851406769 0.00358006064989834 0.0540160820862053 0.00012346 1 17659 124.09 99.751 2 18773000 11871 8376.1 14398 8058.1 3851.8 12349 4593.6 8187.6 9311.8 4019.8 11243 7910.8 14225 8362.1 4546.5 12142 4769.5 8495.2 8987.8 3974.6 1 1 1 1 1 1 1 1 1 1 2413 2176 2119 2240 2689 2689 3924 KLNVTEQEK 9 Unmodified _KLNVTEQEK_ 0 0 0 1 P06733 P06733 P06733 ENO1 Alpha-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.047668457031 2 544.800946 1087.58734 32928.8748520092 2.261 0.0012318 630950 343.74 630960 343.74 889.045759028078 39.462 3.2715 39.462 38.183 41.455 0 241 112 4 0.391373539870451 0.00224492072462632 0.0757771585835502 0.055916 2 8897 22.148 1.2463 1 35417000 49636 47739 50497 50698 86565 47799 87277 69912 57391 8210.7 46972 45114 51241 51827 85699 48333 87988 69517 57895 9349.4 2 2 2 2 2 2 2 2 2 2 2414 314 2120 2241 2690;2691 2690 KLPEMDID 8 Unmodified _KLPEMDID_ 0 0 0 1 P34932 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.902160644531 2 480.738968 959.463383 37415.717302196 2.5064 0.0012049 476690 229.16 476690 229.16 709.901773629666 72.658 0.41259 72.658 72.454 72.867 0 27 13 3 0.686449068760713 0.00110625239262103 0.037886905567612 0.023841 1 17051 53.968 38.886 1 11424000 17352 20762 17989 22809 16194 17719 15502 18185 24066 8998.4 16422 19625 18054 23213 16538 18011 16047 18494 23383 8894 1 1 1 1 1 1 1 1 1 1 2415 539 2121 2242 2692 2692 KLPSTTL 7 Phospho (STY) _KLPST(ph)TL_ KLPS(0.053)T(0.783)T(0.164)L KLPS(-11.73)T(6.78)T(-6.78)L 0 0 1 1 Q15418 Q15418 Q15418 RPS6KA1 Ribosomal protein S6 kinase alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.38134765625 2 420.217344 838.420135 39105.6152886314 3.3246 0.0013971 545340 229.16 545350 229.16 649.380142625801 68.414 0.72805 68.414 68.066 68.794 0 83 24 5 0.943503256345754 0.0119855057746196 1 0.01921 1 16028 86.67 71.588 3 261250000 65044 28973 63917 27764 37012 57722 39949 46138 27908 5132.6 61544 27363 64102 29062 39178 56385 40194 46883 28047 5900.7 1 1 1 1 1 1 1 1 1 1 2416 1075 2122 2243 2693 2693 4573 KLSASYEK 8 Phospho (STY) _KLS(ph)ASYEK_ KLS(0.989)AS(0.006)Y(0.005)EK KLS(22.18)AS(-22.18)Y(-23.1)EK 0 0 1 1 Q9Y297 Q9Y297 Q9Y297 BTRC F-box/WD repeat-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 564.990844726563 3 335.826602 1004.45798 43002.2370923892 1.3369 0.00044898 682380 229.16 682390 229.16 564.98937943897 51.554 0.28721 51.554 51.431 51.718 -7.1054E-15 20 9 3 0.461712689802076 0.000420210641487315 0.00231955684958095 0.035014 1 12006 50.354 25.972 3 10214000 15206 15602 16020 16879 14601 16666 15494 15854 16570 2348 14391 14746 16068 17250 14914 16709 15758 16005 16304 2577.9 1 1 1 1 1 1 1 1 1 1 2417 2241 2123 2244 2694 2694 4136 KLSEADNR 8 Phospho (STY) _KLS(ph)EADNR_ KLS(1)EADNR KLS(85.27)EADNR 0 0 1 1 Q9UNL2 Q9UNL2 Q9UNL2 SSR3 Translocon-associated protein subunit gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.889099121094 2 506.726596 1011.43864 36127.4690821703 1.2746 0.00064586 452240 229.16 452240 229.16 735.889588157327 34.357 0.38819 34.357 34.162 34.55 0 30 12 3 0.999441695454156 0.00105747266625968 0.0122832183257977 0.01168 1 7691 85.274 53.78 1 33846000 31012 16708 30788 16174 20273 33773 20477 23394 16886 3309.8 29344 15780 30887 16922 21194 32943 20735 23968 16814 3658 1 1 1 1 1 1 1 1 1 1 2418 2206 2124 2245 2695 2695 3993 KLSEADNRK 9 Phospho (STY) _KLS(ph)EADNRK_ KLS(1)EADNRK KLS(58.83)EADNRK 0 0 1 2 Q9UNL2 Q9UNL2 Q9UNL2 SSR3 Translocon-associated protein subunit gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.015075683594 3 380.85181 1139.5336 40827.2795653271 1.4064 0.00053561 601710 229.16 601710 229.16 610.014679728026 36.683 0.7556 36.683 36.372 37.128 0 57 25 4 0.970256168840771 0.00227761802166747 0.015249359633918 0.029113 1 8246 58.831 27.603 1 47357000 23477 10132 23060 9517.3 15259 23073 17075 17912 10528 3125.7 22213 9568.3 23152 10027 15965 22463 17115 18262 10666 3357.8 1 1 1 1 1 1 1 1 1 1 2419 2206 2125 2246 2696 2696 3993 KLSGDQITLPTTVDYSSVPK 20 Phospho (STY) _KLS(ph)GDQITLPTTVDYSSVPK_ KLS(0.978)GDQIT(0.022)LPTTVDYSSVPK KLS(16.47)GDQIT(-16.47)LPT(-72.01)T(-90.12)VDY(-125.46)S(-131.61)S(-139)VPK 0 0 1 1 O00559 O00559 O00559 EBAG9 Receptor-binding cancer antigen expressed on SiSo cells MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 973.204040527344 3 743.706525 2228.09775 31364.3038183182 1.5204 0.0011307 308140 229.16 308140 229.16 973.204151585175 85.256 0.779 85.256 84.924 85.703 -1.4211E-14 120 26 7 0.859838759483117 0.00834732998779617 0.157626301293522 4.53E-11 1 19871 182.95 143.02 7 162620000 8895.2 10197 9130.7 9727.9 9363.3 8065.2 11216 12152 9626.5 16836 8418.1 9630 9186.9 9990.2 9512.9 8241.3 11284 12539 9565.9 16134 1 1 1 1 1 1 1 1 1 1 2420 53 2126 2247 2697 2697 76 KLSGDQPAAR 10 Phospho (STY) _KLS(ph)GDQPAAR_ KLS(1)GDQPAAR KLS(119.87)GDQPAAR 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 527.624389648438 3 374.848289 1121.52304 43006.2539933201 0.67536 0.00025316 407570 152.78 407570 152.78 527.623876131888 35.01 1.0755 35.01 34.718 35.793 0 123 36 6 0.890313900324601 0.0110034079432758 0.181470021097087 0.00015837 1 7822 119.87 98.277 1 728160000 30310 45668 27504 48201 28886 26068 34577 33522 47729 3421.2 28670 43155 27884 48981 29325 27217 35283 33439 46537 3997.3 1 1 1 1 1 1 1 1 1 1 2421 953 2127 2248 2698 2698 1597 KLSLSEGK 8 Phospho (STY) _KLS(ph)LSEGK_ KLS(0.772)LS(0.228)EGK KLS(5.3)LS(-5.3)EGK 0 0 1 1 Q49A26 Q49A26 Q49A26 GLYR1 Putative oxidoreductase GLYR1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 543.658386230469 3 314.494964 940.463063 42712.3635079901 1.1148 0.00035061 728670 229.16 728670 229.16 543.657986358537 58.978 0.72874 58.978 58.636 59.365 0 83 24 5 0.931851602710306 0.0152184201423895 0.252203869421075 0.0006176 1 13807 117.95 65.046 2 102120000 51597 25725 53788 27442 117990 56091 125000 67124 25919 4204 48832 24312 54835 28533 115950 55090 124190 67029 29777 5512.1 1 1 1 1 1 1 1 1 1 1 2422 1134 2128 2249 2699 2699 1975 KLSNPDIFSSTGK 13 Phospho (STY) _KLS(ph)NPDIFSSTGK_ KLS(1)NPDIFSSTGK KLS(40.51)NPDIFS(-40.51)S(-57.15)T(-76.73)GK 0 0 1 1 Q6P0Q8 Q6P0Q8 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.068969726563 3 491.904351 1472.69122 37542.178333469 2.2461 0.0011049 465870 229.16 465870 229.16 721.067058290129 73.567 0.53946 73.567 73.3 73.839 0 66 18 5 0.895779419826384 0.00462464975168514 0.0528440706268667 5.7645E-07 1 17256 147.53 129.39 4 28385000 14362 21333 17096 19478 16529 16848 17581 18307 21106 14593 13600 20142 17052 20070 16825 17051 17942 18746 20676 14165 1 1 1 1 1 1 1 1 1 1 2423 1253 2129 2250 2700 2700 2220 KLSPQDPSEDVSSVDPLK 18 Phospho (STY) _KLSPQDPS(ph)EDVSSVDPLK_ KLS(0.461)PQDPS(0.539)EDVSSVDPLK KLS(-0.68)PQDPS(0.68)EDVS(-47.15)S(-46.56)VDPLK 0 0 1 1 Q53T59 Q53T59 Q53T59 HS1BP3 HCLS1-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.366333007813 4 505.992322 2019.94018 37332.4388001616 1.7596 0.00089035 339670 171.87 339670 171.87 677.863907806737 76.48 0.48959 76.48 76.276 76.766 0 38 16 3 0.703032045859238 0.00049031594567505 0.0185989467394353 0.0083503 1 17960 78.95 57.58 4 10250000 5726.9 4741.2 5936.8 4074.3 6659.4 6957.7 6292.3 4983.4 4904 6403.7 5419.9 4475.1 5974.1 4270.4 6708.8 6832.7 6384.6 5268.2 4897.6 6145.2 1 1 1 1 1 1 1 1 1 1 2424 1156 2130 2251 2701 2701 2006 KLSPTEPK 8 Phospho (STY) _KLS(ph)PTEPK_ KLS(0.973)PT(0.027)EPK KLS(15.49)PT(-15.49)EPK 0 0 1 1 O14828 O14828 O14828 SCAMP3 Secretory carrier-associated membrane protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.329467773438 3 327.166847 978.478713 41559.5251343804 1.3015 0.0004258 700450 229.16 700450 229.16 556.329830506377 47.707 0.49529 47.707 47.481 47.976 0 59 16 5 0.890361648592742 0.00646060300401306 0.0746657514413228 0.00076117 1 11040 112.94 61.502 2 81946000 58608 42054 62638 44199 28535 62441 33082 47528 50893 5506.4 55473 39739 62432 45544 31052 61597 33944 48418 49461 6284.9 1 1 1 1 1 1 1 1 1 1 2425 67 2131 2252 2702 2702 112 KLSQGILIIR 10 Phospho (STY) _KLS(ph)QGILIIR_ KLS(1)QGILIIR KLS(77.22)QGILIIR 0 0 1 1 P13994 P13994 P13994 CCDC130 Coiled-coil domain-containing protein 130 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 560.350708007813 3 407.575729 1219.70536 42403.7571326845 1.4878 0.00060639 374840 152.78 374840 152.78 560.350732796071 83.017 0.52359 83.017 82.739 83.262 -1.4211E-14 38 17 3 0.974650226618856 0.00203613771090688 0.00945296854031028 0.0088276 1 19401 77.222 26.379 1 8566000 4839.3 6113 3337.3 5850.4 6334.3 4589.1 6052.4 4920.6 5302.1 4161 4573.5 5773.3 3483 6002.8 6246.4 4668.2 6153.8 5048.3 5263.4 4031.9 1 1 1 1 1 1 1 1 1 1 2426 385 2132 2253 2703 2703 620 KLSQRPTVAELLAR 14 Phospho (STY) _KLS(ph)QRPTVAELLAR_ KLS(0.999)QRPT(0.001)VAELLAR KLS(30.34)QRPT(-30.34)VAELLAR 0 0 1 2 Q8IZ21 Q8IZ21 Q8IZ21 PHACTR4 Phosphatase and actin regulator 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.752075195313 3 554.641461 1660.90255 37289.5236722141 2.4199 0.0013422 275450 152.78 275450 152.78 707.750916618848 74.117 0.81389 74.117 73.812 74.626 0 87 27 5 0.983119703659839 0.00310508692869836 0.0388190936776908 0.017336 1 17381 71.592 43.879 2 37880000 10330 12150 11483 11955 8496 11341 9099.4 11183 12212 6659 9779.3 11477 11461 12277 8809.6 11406 9318.7 11424 11917 6529.1 1 1 1 1 1 1 1 1 1 1 2427 1439 2133 2254 2704 2704 2668 KLSSAMSAAK 10 Phospho (STY) _KLS(ph)SAMSAAK_ KLS(0.769)S(0.231)AMSAAK KLS(5.22)S(-5.22)AMS(-69.01)AAK 0 0 1 1 P40925 P40925 P40925 MDH1 Malate dehydrogenase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 587.670837402344 3 358.506875 1072.4988 40463.4452502991 2.2948 0.00082269 639210 229.16 639220 229.16 587.669600437141 58.522 0.58453 58.522 58.262 58.846 0 58 19 4 0.97016909356063 0.0088940357985195 0.176425948617011 1.8322E-06 1 13707 151.49 120.26 3 61516000 28117 45315 33804 45788 58748 31859 59468 47187 54692 5304 26627 42810 34018 46761 58150 32758 60368 46898 54167 6086.4 1 1 1 1 1 1 1 1 1 1 2428 574 2134 2255 2705 2705 924 KLSVLGK 7 Phospho (STY) _KLS(ph)VLGK_ KLS(1)VLGK KLS(83.86)VLGK 0 0 1 1 Q8NFC6 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 504.655853271484 3 275.492895 823.456855 44686.6912226456 1.7734 0.00048857 831830 229.16 831830 229.16 504.655477007769 69.28 0.57682 69.28 69.061 69.638 0 47 19 3 0.976327145219393 0.00271469823901922 0.0474543830707038 0.0087091 1 16256 83.862 33.739 1 11551000 14634 4721.3 17250 3592.5 9370.8 16198 8258.2 8894.5 5065.1 1874.5 13857 4453.6 17121 3960.1 9956 15586 8372.2 9261.4 5133.2 1971 1 1 1 1 1 1 1 1 1 1 2429 1521 2135 2256 2706 2706 2796 KLSVPTSDEEDEVPAPKPR 19 Phospho (STY) _KLSVPTS(ph)DEEDEVPAPKPR_ KLSVPT(0.117)S(0.883)DEEDEVPAPKPR KLS(-41.31)VPT(-8.78)S(8.78)DEEDEVPAPKPR 0 0 1 2 Q8NE71 Q8NE71 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.392456054688 4 544.264875 2173.03039 37289.027731205 2.0332 0.0011066 315790 171.87 315790 171.87 716.389402580283 61.923 1.5148 61.923 61.247 62.761 0 163 51 6 0.76872258983822 0.00382027410038667 0.0378969292148716 1.8882E-07 1 14505 142.25 115.52 3 64583000 14279 16557 16228 15936 13726 14311 13695 15194 16864 5052.1 13519 15637 16198 16375 14080 14438 14028 15359 16505 5108.8 1 1 1 1 1 1 1 1 1 1 2430 1514 2136 2257 2707 2707 2780 KLTSDEEGEPSGK 13 Phospho (STY) _KLTS(ph)DEEGEPSGK_ KLT(0.248)S(0.752)DEEGEPSGK KLT(-4.82)S(4.82)DEEGEPS(-61.23)GK 0 0 1 1 Q8WVC0 Q8WVC0 Q8WVC0 LEO1 RNA polymerase-associated protein LEO1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 715.709167480469 3 486.211621 1455.61303 37564.5279365926 2.4239 0.0011785 471320 229.16 471330 229.16 715.708598761169 46.24 1.162 46.24 45.933 47.095 -7.1054E-15 106 39 4 0.937553306130479 0.00354419571303856 0.0972900444400262 2.5823E-05 1 10646 133.93 99.319 3 34522000 29060 29954 27146 28922 34712 28273 36597 33729 33715 8021.9 27491 28291 27541 29748 34803 28452 37083 33863 33389 8334.2 1 1 1 1 1 1 1 1 1 1 2431 1570 2137 2258 2708 2708 2882 KLTSDEEGEPSGKR 14 Phospho (STY) _KLTS(ph)DEEGEPSGKR_ KLT(0.292)S(0.707)DEEGEPS(0.001)GKR KLT(-3.83)S(3.83)DEEGEPS(-29.13)GKR 0 0 1 2 Q8WVC0 Q8WVC0 Q8WVC0 LEO1 RNA polymerase-associated protein LEO1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 575.808776855469 4 403.935813 1611.71415 41736.3049529172 1.4864 0.0006004 425490 171.87 425490 171.87 576.058351117043 39.785 0.87133 39.785 39.48 40.351 0 62 29 4 0.747255896926579 0.00136527350749394 0.0383273454275219 0.011748 1 9020 69.081 47.523 3 13276000 8116.7 9654.3 7984.5 8029.1 9602.4 8139.3 9347.2 9044.2 8432.6 2627.5 7680 9110.8 8066.9 8345 9644.6 8169.8 9501.9 9116 8359.3 2683.4 1 1 1 1 1 1 1 1 1 1 2432 1570 2138 2259 2709 2709 2882 KLVIQPVNLLVSIHASLK 18 Unmodified _KLVIQPVNLLVSIHASLK_ 0 0 0 1 Q7Z7G8 Q7Z7G8 Q7Z7G8 VPS13B Vacuolar protein sorting-associated protein 13B MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.24560546875 3 658.082099 1971.22447 NaN NaN NaN NaN NaN NaN NaN NaN 57.417 1 57.417 56.917 57.917 0 NaN NaN NaN 0.056603 1 13433 16.306 5.362 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2433 1357 2139 2260 2710 2710 KMSGGSTMSSGGGNTNNSNSK 21 Oxidation (M),Phospho (STY) _KM(ox)S(ph)GGSTMSSGGGNTNNSNSK_ KM(0.999)SGGSTM(0.001)SSGGGNTNNSNSK KMS(0.983)GGS(0.013)T(0.004)MSSGGGNTNNSNSK KM(35.44)SGGSTM(-35.44)SSGGGNTNNSNSK KMS(18.88)GGS(-18.88)T(-23.85)MS(-42.16)S(-55.23)GGGNT(-82.86)NNS(-115.16)NS(-125.47)K 0 1 1 1 Q86U70 Q86U70 Q86U70 LDB1 LIM domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 929.440002441406 3 700.27703 2097.80926 32435.8204963016 2.5468 0.0017835 327250 229.16 327250 229.16 929.44030178961 31.013 0.3912 31.013 30.819 31.21 0 44 12 5 0.91347570931464 0.00170822442216789 0.0386166127363368 1.5621E-05 1 6922 128.89 107.49 16 11962000 3788 10021 4488.2 9279.3 12049 3954.3 17115 10354 9988.1 3586.3 3587.1 9461.9 4581.2 9487.3 11846 4288.2 16983 10246 10158 3616.5 1 1 1 1 1 1 1 1 1 1 2434 1366 2140 2261 2711 2711 170;171 2476;2477;4644 KMSGGSTMSSGGGNTNNSNSK 21 Oxidation (M),Phospho (STY) _KMSGGS(ph)TM(ox)SSGGGNTNNSNSK_ KMSGGSTM(1)SSGGGNTNNSNSK KMS(0.118)GGS(0.411)T(0.411)MS(0.057)S(0.003)GGGNTNNSNSK KM(-35.6)SGGSTM(35.6)SSGGGNTNNSNSK KMS(-5.42)GGS(0)T(0)MS(-8.6)S(-21.79)GGGNT(-89.91)NNS(-129.09)NS(-140.61)K 0 1 1 1 Q86U70 Q86U70 Q86U70 LDB1 LIM domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 929.774291992188 3 700.27703 2097.80926 32210.8159362037 2.08 0.0014566 327240 229.16 327250 229.16 929.772748984957 31.964 0.41861 31.964 31.76 32.178 0 50 13 5 0.980300627637724 0.00290731514765612 0.0646235711511785 5.2954E-08 1 7147 156.7 140.76 16 15334000 5210 12318 5274.3 11766 19838 5678.9 19567 13300 13611 7932.8 4930.3 11633 5485 12016 19262 6074.4 19768 13284 13683 7777.5 1 1 1 1 1 1 1 1 1 1 2435 1366 2140 2261 2712 2712 170;171 2476;2477;4644 KMSGGSTMSSGGGNTNNSNSK 21 Phospho (STY) _KMS(ph)GGSTMSSGGGNTNNSNSK_ KMS(0.722)GGS(0.239)T(0.038)MS(0.001)SGGGNTNNSNSK KMS(4.79)GGS(-4.79)T(-12.75)MS(-30.65)S(-43.64)GGGNT(-86.81)NNS(-136.64)NS(-194.44)K 0 0 1 1 Q86U70 Q86U70 Q86U70 LDB1 LIM domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 924.447448730469 3 694.945392 2081.81435 32298.0631426538 2.4331 0.0016909 329760 229.16 329760 229.16 924.443752505385 38.113 0.43371 38.113 37.891 38.325 0 65 14 6 0.992905142973429 0.00471010920748833 0.0386611103970535 1.5329E-23 1 8613 277.05 232.55 8 83210000 11694 27184 13977 27192 36788 11910 47716 32014 30652 4054 11075 25680 14243 27674 36124 12880 47579 31456 30968 4558.3 1 1 1 1 1 1 1 1 1 1 2436 1366 2140 2262 2713 2713 2476;2477;4644 KMSQPGSPSPK 11 2 Phospho (STY) _KMS(ph)QPGS(ph)PSPK_ KMS(0.999)QPGS(0.5)PS(0.5)PK KMS(28.18)QPGS(0)PS(0)PK 0 0 2 1 Q14839 Q14839 Q14839 CHD4 Chromodomain-helicase-DNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.342041015625 3 435.176628 1302.50805 36391.3628712815 2.2201 0.00096615 526600 229.16 526600 229.16 664.339765685507 43.046 0.75622 43.046 42.708 43.465 0 59 25 3 0.986544074694448 0.00329141602864381 0.0440079445854091 0.0048488 1 9889 84.829 61.912 3 62100000 27414 28253 32721 27157 31001 35490 36834 31801 34870 8214.4 25960 26684 32633 28085 31642 35171 37160 32289 34490 8470.8 1 1 1 1 1 1 1 1 1 1 2437 1030 2141 2263 2714 2714 1765;1766;1767 KMSVMGR 7 Phospho (STY) _KMS(ph)VMGR_ KMS(1)VMGR KMS(76.28)VMGR 0 0 1 1 Q7Z3K3 Q7Z3K3 Q7Z3K3 POGZ Pogo transposable element with ZNF domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 449.573944091797 3 296.799225 887.375844 47101.746257503 0.26879 7.9775E-05 514740 152.77 514740 152.77 449.574401888927 47.97 0.44493 47.97 47.772 48.217 7.1054E-15 31 14 3 0.853878646456107 0.00105939305599871 0.00783837328872364 0.011769 1 11141 76.282 45.712 1 16113000 34752 9872.6 36002 9662.2 20451 33872 20353 21727 9081.3 1925.5 32889 9325.1 35990 10323 21660 32723 20414 22322 9438.6 2315.9 1 1 1 1 1 1 1 1 1 1 2438 1332 2142 2264 2715 2715 2399 KNGSTAVAESVASPQK 16 Phospho (STY) _KNGSTAVAESVAS(ph)PQK_ KNGSTAVAESVAS(1)PQK KNGS(-79.78)T(-80.42)AVAES(-34.16)VAS(34.16)PQK 0 0 1 1 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 781.095947265625 3 551.93297 1652.77708 36670.9142113031 1.5795 0.0008718 415200 229.16 415200 229.16 781.42986127501 46.626 0.30893 46.626 46.519 46.828 0 18 10 2 0.986714796393804 0.000840280922773074 0.0106927808663359 0.00012063 1 10800 109.23 91.404 4 14246000 14821 15371 14076 15781 13324 14482 12158 13992 20056 13742 14021 14523 14205 16157 13556 14594 12648 14468 19455 13264 1 1 1 1 1 1 1 1 1 1 2439 911 2143 2265 2716 2716 1500 KNQSSEDILR 10 Phospho (STY) _KNQSS(ph)EDILR_ KNQS(0.271)S(0.729)EDILR KNQS(-4.31)S(4.31)EDILR 0 0 1 1 Q13625 Q13625 Q13625 TP53BP2 Apoptosis-stimulating of p53 protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 576.6416015625 3 423.866008 1268.5762 NaN NaN NaN NaN NaN NaN NaN NaN 47.513 1 47.513 47.013 48.013 0 NaN NaN NaN 0.00059203 1 11004 114.69 73.313 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2440 976 2144 2266 2717 2717 1653;1654 KNSAPQLPLLQSSGPFVEGSIVR 23 Phospho (STY) _KNS(ph)APQLPLLQSSGPFVEGSIVR_ KNS(1)APQLPLLQSSGPFVEGSIVR KNS(73.09)APQLPLLQS(-73.09)S(-92.98)GPFVEGS(-144.04)IVR 0 0 1 1 Q8IY18 Q8IY18 Q8IY18 SMC5 Structural maintenance of chromosomes protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.912109375 4 626.828174 2503.28359 36403.9159691655 1.6406 0.0010284 182800 114.58 182800 114.58 741.660442376763 99.303 0.63009 99.303 99.006 99.636 0 59 21 5 0.841105785042851 0.00478122172459554 0.201948833935959 1.4553E-08 1 23086 168.98 152.05 4 42421000 6063.4 3295.9 5131.9 2200.6 5707.2 3566.4 7058.3 5266.8 4261.5 16740 5734 3107.3 5230.7 2348.3 5774.1 3566.6 7043.2 5721.5 4323.4 15885 1 1 1 1 1 1 1 1 1 1 2441 1431 2145 2267 2718 2718 2610 KNSASAER 8 Phospho (STY) _KNS(ph)ASAER_ KNS(0.947)AS(0.053)AER KNS(12.51)AS(-12.51)AER 0 0 1 1 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.869384765625 2 471.705664 941.396774 37594.511403365 2.3305 0.0010993 485820 229.16 485820 229.16 700.868451682917 23.808 0.35015 23.808 23.642 23.992 0 29 11 3 0.995537752588726 0.00148616877710377 0.0178250295994298 0.019361 1 5346 72.817 41.706 2 11369000 5976.4 5288.4 4739.6 4588.8 4355.4 6310.6 4617.1 4176 5819.2 1303.4 5650.5 4991.8 4839.4 4782 4447.4 6224.3 4720.2 4310.9 5690.8 1324 1 1 1 1 1 1 1 1 1 1 2442 1755 2146 2268 2719 2719 3224 KNSFGYR 7 Phospho (STY) _KNS(ph)FGYR_ KNS(0.996)FGY(0.004)R KNS(23.71)FGY(-23.71)R 0 0 1 1 Q92615 Q92615 Q92615 LARP4B La-related protein 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 470.583374023438 3 317.807654 950.401131 45268.4182504552 0.44133 0.00014026 480720 152.78 480720 152.78 470.58310687755 44.249 1.0101 44.249 43.757 44.767 7.1054E-15 84 29 4 0.973147997452389 0.00575853762330322 0.103684965991485 0.008376 1 10139 84.687 61.333 2 94398000 60901 49074 62932 46066 50834 63142 60833 59201 49631 1743.1 57635 46341 63123 47757 52432 62482 61136 59589 49446 3011.5 1 1 1 1 1 1 1 1 1 1 2443 1609 2147 2269 2720 2720 2964 KNSLISSLEEEVSILNR 17 Phospho (STY) _KNS(ph)LISSLEEEVSILNR_ KNS(0.998)LIS(0.001)SLEEEVSILNR KNS(28.43)LIS(-28.43)S(-33.79)LEEEVS(-86.34)ILNR 0 0 1 1 Q14980 Q14980 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.119506835938 3 671.008427 2010.00345 34569.2258628358 1.5286 0.0010257 227680 152.78 227680 152.78 824.118143599997 101.26 0.25646 101.26 101.19 101.44 1.4211E-14 20 8 4 0.864466894370269 0.00273222970468175 0.0581709496186931 0.00010543 1 23793 104.33 83.075 4 113080000 14058 18724 13997 18151 21204 17612 29901 21272 15928 50306 13302 17684 14203 18664 21203 17818 29636 22711 16308 47862 1 1 1 1 1 1 1 1 1 1 2444 1036 2148 2270 2721 2721 1788 KNTQSFK 7 Phospho (STY) _KNTQS(ph)FK_ KNT(0.015)QS(0.985)FK KNT(-18.26)QS(18.26)FK 0 0 1 1 Q9NU22 Q9NU22 Q9NU22 MDN1 Midasin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.642150878906 3 311.479425 931.416447 42817.3945093186 1.3811 0.00043017 735720 229.16 735730 229.16 540.642287454153 43.007 0.64544 43.007 42.708 43.354 0 62 21 4 0.940407365621791 0.00364050695445391 0.038968476851525 0.015814 1 9809 66.262 28.241 2 92085000 51088 42539 51244 43215 38100 48903 41303 44311 49617 4059 48343 40189 51436 44422 39494 48714 42117 44747 48604 4847.6 1 1 1 1 1 1 1 1 1 1 2445 2036 2149 2271 2722 2722 3698 KPAGATPK 8 Phospho (STY) _KPAGAT(ph)PK_ KPAGAT(1)PK KPAGAT(71.56)PK 0 0 1 1 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 512.976135253906 3 283.812516 848.415719 43445.4454867894 0.85747 0.00024336 807450 229.16 807450 229.16 512.975512538297 36.576 2.0655 36.576 36.145 38.211 0 212 74 4 0.944031199980878 0.00552828536170612 0.0799960931415871 0.037003 2 8189 71.558 26.793 1 255580000 123570 33774 126150 33290 44579 121820 49070 68569 34647 4614.3 116940 31902 125890 35633 50105 117490 49339 70982 34798 5931.9 2 2 2 2 2 2 2 2 2 2 2446 407 2150 2272 2723;2724 2723 4401 KPALPVSPAAR 11 Phospho (STY) _KPALPVS(ph)PAAR_ KPALPVS(1)PAAR KPALPVS(102.29)PAAR 0 0 1 1 Q9BWU0 Q9BWU0 Q9BWU0 SLC4A1AP Kanadaptin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.326171875 3 396.216313 1185.62711 42049.2881026648 1.1629 0.00046074 385590 152.78 385590 152.78 548.99119008683 55.254 1.1028 55.254 54.698 55.801 -7.1054E-15 107 36 5 0.896615103075856 0.00517560372946461 0.0305469827764726 0.00019883 1 12869 102.29 77.502 1 82812000 18748 24789 19897 25236 13621 21196 15245 22050 26699 3787.5 17744 23420 19896 25819 14227 21444 15754 22199 25859 4076.7 1 1 1 1 1 1 1 1 1 1 2447 1855 2151 2273 2725 2725 3389 KPEEESPR 8 Phospho (STY) _KPEEES(ph)PR_ KPEEES(1)PR KPEEES(90.61)PR 0 0 1 1 P49321 P49321 P49321 NASP Nuclear autoantigenic sperm protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.928527832031 3 351.153378 1050.4383 44505.1957351249 1.0226 0.0003591 435070 152.78 435070 152.78 503.928792923573 29.533 0.64354 29.533 29.28 29.924 0 74 21 5 0.965819600302435 0.00492906789253775 0.061546505277854 0.0051854 1 6556 90.614 51.033 1 91796000 19881 34165 22821 34592 26428 20848 22374 29973 34920 3055.6 18824 32277 22847 35271 26561 21630 23313 29803 33924 3570.9 1 1 1 1 1 1 1 1 1 1 2448 635 2152 2274 2726 2726 1050 KPGPPLSPEIR 11 Phospho (STY) _KPGPPLS(ph)PEIR_ KPGPPLS(1)PEIR KPGPPLS(98.28)PEIR 0 0 1 1 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 576.99951171875 3 424.223356 1269.64824 41258.8125997445 1.4178 0.00060146 360130 152.78 360130 152.78 576.998664015158 58.858 1.3408 58.858 58.17 59.51 0 145 45 5 0.937129755725197 0.00270111357713133 0.0363982195032213 0.0013232 1 13723 98.281 55.438 1 100220000 15817 10964 16696 13648 16283 15348 14253 14301 12422 2919.9 14970 10373 16752 13877 16518 15301 14556 14473 12334 3080.4 1 1 1 1 1 1 1 1 1 1 2449 1699 2153 2275 2727 2727 3124 KPGPSGPSESPK 12 Phospho (STY) _KPGPSGPSES(ph)PK_ KPGPS(0.01)GPS(0.111)ES(0.88)PK KPGPS(-19.59)GPS(-9.01)ES(9.01)PK 0 0 1 1 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.69091796875 3 416.527104 1246.55948 39176.5962272126 2.6922 0.0011214 550180 229.16 550180 229.16 645.690076801223 38.605 0.72907 38.605 38.383 39.112 0 73 24 5 0.957096802281256 0.00741654499288745 0.0775687623081593 7.4905E-05 1 8767 122.87 88.597 3 78535000 57653 42328 52042 44118 38149 58822 40585 49397 54108 3087.1 54533 39996 52561 45426 39581 58192 41565 50007 52815 4050.1 1 1 1 1 1 1 1 1 1 1 2450 1699 2154 2276 2728 2728 3125 KPIDSLRDSR 10 Phospho (STY) _KPIDSLRDS(ph)R_ KPIDS(0.002)LRDS(0.998)R KPIDS(-28.23)LRDS(28.23)R 0 0 1 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 575.65478515625 3 422.878248 1265.61291 40869.8758741445 1.6212 0.00068556 361270 152.78 361280 152.78 575.653788045863 43.849 1.483 43.849 43.465 44.948 0 155 50 6 0.901370917716077 0.00835634390789622 0.0323855146154157 0.012479 1 10020 76.759 55.7 2 199020000 61850 25058 70953 26444 38433 61688 51887 41941 29555 1855 58560 23679 70549 27634 41091 60015 51559 42891 30109 2717.3 1 1 1 1 1 1 1 1 1 1 2451 2226 2155 2277 2729 2729 4055 KPIETGSPK 9 Phospho (STY) _KPIETGS(ph)PK_ KPIET(0.004)GS(0.996)PK KPIET(-24.29)GS(24.29)PK 0 0 1 1 Q05519 Q05519 Q05519 SRSF11 Serine/arginine-rich splicing factor 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 575.337768554688 3 346.174002 1035.50018 41276.3966171819 1.2894 0.00044636 661990 229.16 661990 229.16 575.336989876894 45.367 2.0298 45.367 44.859 46.888 7.1054E-15 242 69 6 0.965318509756515 0.016478821374354 0.291752234404609 0.00018774 2 10368 124.24 99.981 2 2115500000 66496 85110 75650 80470 82200 62766 95149 78292 84097 7996.7 62956 80374 75753 82623 83202 63913 95929 78172 83447 9341.8 2 2 2 2 2 2 2 2 2 2 2452 870 2156 2278 2730;2731 2730 1411 KPLSPPK 7 Phospho (STY) _KPLS(ph)PPK_ KPLS(1)PPK KPLS(50.28)PPK 0 0 1 1 Q13029 Q13029 Q13029 PRDM2 PR domain zinc finger protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 511.984375 3 282.821011 845.441205 43981.148326259 1.8266 0.00051661 810280 229.16 810280 229.16 511.983965081466 51.154 0.92794 51.154 50.618 51.546 0 83 31 3 0.927570226353741 0.00193364542867139 0.0135175198289567 0.035964 1 11875 50.284 14.742 1 15373000 13121 13993 13604 17573 13243 14114 11176 13326 18080 1949.7 12418 13239 13663 17769 13438 14295 11665 13456 17547 2144.3 1 1 1 1 1 1 1 1 1 1 2453 918 2157 2279 2732 2732 1513 KPNIFYSGPASPARPR 16 Phospho (STY) _KPNIFYSGPAS(ph)PARPR_ KPNIFYSGPAS(1)PARPR KPNIFY(-106.65)S(-44.57)GPAS(44.57)PARPR 0 0 1 2 Q6PL18 Q6PL18 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.421630859375 3 613.308482 1836.90362 35580.5514250719 1.795 0.0011009 249100 152.78 249100 152.78 766.419009730897 61.514 0.79603 61.514 61.124 61.92 -7.1054E-15 108 26 6 0.939105838254039 0.00374878662069551 0.0479577406538898 7.6328E-07 1 14369 146.89 128.74 3 154170000 23065 15851 23086 15879 11132 22486 10610 16286 16394 10922 21825 14974 23097 16408 12001 22186 10983 16906 15930 10661 1 1 1 1 1 1 1 1 1 1 2454 1274 2158 2280 2733 2733 2266 KPPAPPSPVQSQSPSTNWSPAVPVK 25 2 Phospho (STY) _KPPAPPSPVQS(ph)QS(ph)PSTNWSPAVPVK_ KPPAPPS(0.069)PVQS(0.932)QS(0.859)PS(0.14)T(0.001)NWSPAVPVK KPPAPPS(-11.4)PVQS(11.4)QS(7.89)PS(-7.89)T(-29.8)NWS(-89.03)PAVPVK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 858.701354980469 4 686.577763 2742.28195 34287.6749131195 2.0853 0.0014318 250330 171.87 250330 171.87 858.701064599975 77.063 0.80841 77.063 76.737 77.545 0 84 27 4 0.964698713724471 0.00268531883720331 0.012965932139626 1.0115E-07 2 18057 156.08 144.3 15 21294000 12044 19121 12309 18454 13311 11508 13807 14553 19825 23401 11397 18059 12392 18877 13462 11927 14195 15185 19306 22372 2 2 2 2 2 2 2 2 2 2 2455 1436 2159 2281 2734;2735 2734 2635;2636 KPPLSPAQTNPVVQR 15 Phospho (STY) _KPPLS(ph)PAQTNPVVQR_ KPPLS(1)PAQTNPVVQR KPPLS(38.04)PAQT(-38.04)NPVVQR 0 0 1 1 Q8IY33 Q8IY33 Q8IY33 MICALL2 MICAL-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.075622558594 3 571.301216 1710.88182 37768.1842316338 1.5883 0.00090742 267420 152.78 267420 152.78 724.075509433289 55.096 0.61104 55.096 54.81 55.421 0 44 20 3 0.5314619034423 0.00143704964586961 0.00528095982777974 0.0062162 1 12836 86.959 64.08 2 26784000 16197 42542 15064 42111 29071 17439 27036 29416 48057 54230 15322 40186 15401 42868 28665 18833 28194 30676 46526 51745 1 1 1 1 1 1 1 1 1 1 2456 1433 2160 2282 2736 2736 2614 KPSASER 7 Phospho (STY) _KPS(ph)ASER_ KPS(0.998)AS(0.002)ER KPS(26.45)AS(-26.45)ER 0 0 1 1 Q15154 Q15154 Q15154 PCM1 Pericentriolar material 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.854187011719 2 427.692025 853.369497 37200.8923020581 2.9529 0.0012629 535810 229.16 535820 229.16 656.854545795442 27.942 0.34111 27.942 27.751 28.092 0 27 11 3 0.983254644554607 0.0024129154765009 0.079654252137627 0.037191 1 6216 59.542 24.001 2 19571000 17328 9369.2 16786 9046.9 10489 17683 12295 13930 9012.5 4319.8 16395 8848.9 16860 9447.5 11039 17300 12338 14248 9031.8 4390 1 1 1 1 1 1 1 1 1 1 2457 1062 2161 2283 2737 2737 1834 KPSEDEVLNK 10 Phospho (STY) _KPS(ph)EDEVLNK_ KPS(1)EDEVLNK KPS(79.32)EDEVLNK 0 0 1 1 Q8NDI1 Q8NDI1 Q8NDI1 EHBP1 EH domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.691467285156 3 413.526992 1237.55915 36749.5588878414 2.3568 0.00097459 554170 229.16 554170 229.16 643.024868293514 56.55 0.58916 56.55 56.279 56.868 0 46 19 3 0.703024017048125 0.00246680973114315 0.0571717356844514 0.0080882 1 13197 79.317 52.288 1 18680000 18634 14746 20097 15880 14377 18873 15892 16904 13754 8840.3 17638 13937 20085 16284 14947 18776 16045 17298 13661 8715.4 1 1 1 1 1 1 1 1 1 1 2458 1507 2162 2284 2738 2738 2767 KPSEEEYVIR 10 Phospho (STY) _KPS(ph)EEEYVIR_ KPS(1)EEEYVIR KPS(64.83)EEEY(-64.83)VIR 0 0 1 1 Q15052 Q15052 Q15052 ARHGEF6 Rho guanine nucleotide exchange factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 596.650817871094 3 443.874392 1328.60135 40455.2320591553 1.4499 0.00064359 344190 152.78 344190 152.78 596.649591785721 56.317 0.59689 56.317 56.067 56.664 0 75 19 5 0.958537185967669 0.00592118730718525 0.0751574939331268 0.00012217 1 13124 124.25 91.393 2 109990000 19156 8429.8 21235 6953.8 28318 18684 36109 19794 7442.6 2958.4 18135 7954.9 21364 7418.5 28402 18224 35597 19901 8559.5 3243.8 1 1 1 1 1 1 1 1 1 1 2459 1051 2163 2285 2739 2739 1814 KPSEEEYVIRK 11 Phospho (STY) _KPS(ph)EEEYVIRK_ KPS(1)EEEYVIRK KPS(42.38)EEEY(-42.38)VIRK 0 0 1 2 Q15052 Q15052 Q15052 ARHGEF6 Rho guanine nucleotide exchange factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.306213378906 4 365.181354 1456.69631 42994.9302435576 1.2693 0.00046354 470650 171.87 470650 171.87 537.305620601764 56.477 0.47351 56.477 56.249 56.722 0 45 15 4 0.886080083881487 0.00340916050206325 0.0620390478640545 0.0055412 1 13196 84.41 59.48 2 17286000 8757.6 4194.6 8455.6 5252.5 16040 9440.2 17806 11768 5233.8 1145.9 8285.8 3968.5 8627.9 5395.8 15843 9306.8 17695 11749 5697.4 1351.4 1 1 1 1 1 1 1 1 1 1 2460 1051 2164 2286 2740 2740 1814 KPSGSPDLWK 10 Phospho (STY) _KPSGS(ph)PDLWK_ KPS(0.013)GS(0.987)PDLWK KPS(-18.9)GS(18.9)PDLWK 0 0 1 1 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.355041503906 3 398.856673 1193.54819 39705.063274735 2.3226 0.00092639 574550 229.16 574550 229.16 628.019450712354 67.068 0.89748 67.068 66.747 67.645 0 102 30 5 0.9587381525276 0.0092663306517265 0.143806210700331 0.0019627 1 15719 96.673 60.38 2 55423000 14529 15418 18081 17519 24080 16220 28286 19016 18799 3864.3 13761 14577 18084 17839 24133 16358 28331 19083 18951 4078.8 1 1 1 1 1 1 1 1 1 1 2461 1699 2165 2287 2741 2741 3126 KPSIILSK 8 Phospho (STY) _KPS(ph)IILSK_ KPS(1)IILSK KPS(39.1)IILS(-39.1)K 0 0 1 1 Q9NPI6 Q9NPI6 Q9NPI6 DCP1A mRNA-decapping enzyme 1A MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.682861328125 3 322.519221 964.535834 NaN NaN NaN NaN NaN NaN NaN NaN 69.273 1 69.273 68.773 69.773 0 NaN NaN NaN 0.033801 1 16257 63.091 25.947 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2462 1998 2166 2288 2742 2742 3627 KPSISITTESLK 12 Phospho (STY) _KPS(ph)ISITTESLK_ KPS(0.992)IS(0.008)ITTESLK KPS(21.09)IS(-21.09)IT(-63.64)T(-72.12)ES(-105.92)LK 0 0 1 1 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.407165527344 3 461.909214 1382.70581 38460.2106662155 2.3033 0.0010639 496120 229.16 496120 229.16 691.072224159947 73.699 0.51126 73.699 73.414 73.925 0 58 17 5 0.942303182601492 0.00358034662192606 0.0602915879770989 3.9223E-11 1 17290 197.51 161.12 5 28892000 25413 12685 24888 13744 25096 26508 26646 22655 15470 17667 24046 11989 25097 14252 25467 25986 26743 23407 15738 17160 1 1 1 1 1 1 1 1 1 1 2463 2180 2167 2289 2743 2743 3932 KPSLVASK 8 Phospho (STY) _KPS(ph)LVASK_ KPS(1)LVASK KPS(39.86)LVAS(-39.86)K 0 0 1 1 P56211 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.987976074219 2 455.243893 908.473233 35459.3594343814 1.7599 0.00080118 755080 343.74 755080 343.75 798.988816196032 54.68 0.3652 54.68 54.473 54.838 0 24 12 3 0.84056014242677 0.000646501608249347 0.00499944725509241 0.015609 1 12754 78.903 41.791 2 11905000 26788 18363 26944 18187 24377 27332 26491 24207 19616 15910 25349 17346 27095 18832 24913 26979 26676 24882 19647 15541 1 1 1 1 1 1 1 1 1 1 2464 729 2168 2290 2744 2744 1210 KPSPAQAAETPALELPLPSVPAPAPL 26 Phospho (STY) _KPS(ph)PAQAAETPALELPLPSVPAPAPL_ KPS(1)PAQAAETPALELPLPSVPAPAPL KPS(40.69)PAQAAET(-40.69)PALELPLPS(-194.1)VPAPAPL 0 0 1 1 Q8WX92 Q8WX92 Q8WX92 NELFB Negative elongation factor B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1034.57861328125 3 881.466217 2641.37682 30894.2490962568 0.86812 0.00076522 173320 152.78 173320 152.78 1034.57638811091 101.66 0.28625 101.66 101.5 101.79 0 40 9 5 0.994476896774761 0.0702170973887758 1 9.8009E-25 1 23897 267.93 248.39 3 1137400000 21642 19679 18523 22613 15605 19719 17892 23438 22485 108420 20467 18607 18799 22993 16045 20146 18228 26633 21991 102640 1 1 1 1 1 1 1 1 1 1 2465 1578 2169 2291 2745 2745 2904 KPSPAQAAETPALELPLPSVPAPAPL 26 Phospho (STY) _KPS(ph)PAQAAETPALELPLPSVPAPAPL_ KPS(0.999)PAQAAET(0.001)PALELPLPSVPAPAPL KPS(28.42)PAQAAET(-28.42)PALELPLPS(-181.33)VPAPAPL 0 0 1 1 Q8WX92 Q8WX92 Q8WX92 NELFB Negative elongation factor B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.184753417969 4 661.351482 2641.37682 35442.8092104814 1.1287 0.00074645 173250 114.58 173260 114.58 776.1843191573 101.66 0.28625 101.66 101.5 101.79 0 44 9 7 0.98801958154434 0.0643490904336854 0.7218161032374 7.0268E-18 1 23902 232.2 210.83 3 916180000 22556 22998 22466 22650 19105 22506 20514 24707 26463 67041 21344 21723 22588 23276 19611 22719 20977 26717 25859 63699 1 1 1 1 1 1 1 1 1 1 2466 1578 2169 2291 2746 2746 2904 KPSPEPEGEVGPPK 14 Phospho (STY) _KPS(ph)PEPEGEVGPPK_ KPS(1)PEPEGEVGPPK KPS(101.49)PEPEGEVGPPK 0 0 1 1 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.073059082031 3 509.907873 1526.70179 35793.2570910019 2.2984 0.001172 449420 229.16 449420 229.16 739.071372217311 51.019 0.72656 51.019 50.705 51.431 0 72 24 4 0.840586858765271 0.000654027734543174 0.00457205886767769 0.00021655 1 11929 101.49 76.709 1 48791000 14110 9598.4 14777 9111.6 8441.6 15547 10596 10833 9249.5 9077.8 13354 9064.5 14767 9488.6 8969.8 15254 10645 11322 9183.5 8798.6 1 1 1 1 1 1 1 1 1 1 2467 1350 2170 2292 2747 2747 2441 KPSPQPSSPR 10 Phospho (STY) _KPSPQPSS(ph)PR_ KPSPQPS(0.001)S(0.999)PR KPS(-61.9)PQPS(-30.05)S(30.05)PR 0 0 1 1 O75909 O75909 O75909 CCNK Cyclin-K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.296325683594 3 387.520172 1159.53869 41697.7936666435 1.785 0.00069172 394240 152.78 394240 152.78 540.29577689188 30.09 0.89248 30.09 29.835 30.728 0 73 29 4 0.994072051421809 0.0189302886364379 0.453618221891518 2.7817E-06 1 6701 138.77 76.726 3 160820000 42860 32517 40592 35215 27586 42597 28554 37651 36275 4683.8 40548 30733 40847 36111 28783 42314 29231 38099 35465 5281.7 1 1 1 1 1 1 1 1 1 1 2468 205 2171 2293 2748 2748 356;357 KPSPQPSSPR 10 2 Phospho (STY) _KPS(ph)PQPSS(ph)PR_ KPS(0.995)PQPS(0.013)S(0.992)PR KPS(22.9)PQPS(-21.15)S(21.15)PR 0 0 2 1 O75909 O75909 O75909 CCNK Cyclin-K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.924255371094 2 620.759785 1239.50502 34050.6647053799 1.8833 0.0011691 369170 229.16 369170 229.16 849.923099801904 32.24 0.97 32.24 31.852 32.822 0 89 32 4 0.991361341453261 0.00178138999758529 0.0993858349388053 4.4907E-05 1 7170 132.06 66.339 3 40630000 15740 13647 16474 13541 12456 15035 12763 14251 13556 1927.5 14897 12892 16497 13934 12883 14998 12998 14383 13342 2144.8 1 1 1 1 1 1 1 1 1 1 2469 205 2171 2294 2749 2749 356;357 KPSSAAYQK 9 Phospho (STY) _KPS(ph)SAAYQK_ KPS(0.849)S(0.151)AAYQK KPS(7.5)S(-7.5)AAY(-42.88)QK 0 0 1 1 P34741 P34741 P34741 SDC2 Syndecan-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.997802734375 3 353.833868 1058.47978 41052.356805383 2.2604 0.0007998 647660 229.16 647660 229.16 582.996914769607 42.368 0.65454 42.368 42.054 42.708 0 76 22 5 0.984575292031552 0.0119209326239483 0.293531138252344 0.00039664 1 9665 107.61 75.085 3 90030000 106410 9014.8 102820 10007 10069 104080 11688 39737 10227 3338.8 100670 8521.6 102610 11726 15716 99324 11780 42453 10153 4063.6 1 1 1 1 1 1 1 1 1 1 2470 537 2172 2295 2750 2750 871 KPSVGVPPPASPSYPR 16 Phospho (STY) _KPSVGVPPPAS(ph)PSYPR_ KPSVGVPPPAS(0.947)PS(0.053)YPR KPS(-45.12)VGVPPPAS(12.55)PS(-12.55)Y(-41.21)PR 0 0 1 1 Q9P206 Q9P206 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.396911621094 3 572.622067 1714.84437 36443.8862401838 1.9463 0.0011145 266800 152.77 266800 152.78 725.396640107099 56.9 0.87971 56.9 56.425 57.305 0 66 29 3 0.885653535084957 0.00089032740827129 0.00436748766071169 0.014278 1 13315 67.76 47.922 4 15047000 7050.8 15555 8777.8 15238 11522 8981.7 11318 10804 16795 11288 6678.4 14692 8772.7 15564 11533 9326.1 11681 11106 16340 10879 1 1 1 1 1 1 1 1 1 1 2471 2097 2173 2296 2751 2751 3792 KPTAEASPVK 10 Phospho (STY) _KPTAEAS(ph)PVK_ KPTAEAS(1)PVK KPT(-39.5)AEAS(39.5)PVK 0 0 1 1 Q6ZRI6 Q6ZRI6 Q6ZRI6 C15orf39 Uncharacterized protein C15orf39 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.017272949219 3 369.85304 1106.53729 40899.9260790873 2.1643 0.00080047 619610 229.16 619610 229.16 599.01574862832 42.08 0.51093 42.08 41.884 42.395 0 41 17 4 0.867776761646899 0.00344333958756386 0.0500923162309035 0.00023685 1 9607 110.38 78.321 2 22522000 20201 19059 19886 17234 19061 18998 19450 19063 17765 3634.7 19114 17994 20033 17835 19396 18971 19734 19228 17601 3863.7 1 1 1 1 1 1 1 1 1 1 2472 1294 2174 2297 2752 2752 2310 KPVTVSPTTPTSPTEGEAS 19 Phospho (STY) _KPVTVSPTT(ph)PTSPTEGEAS_ KPVT(0.002)VS(0.023)PT(0.163)T(0.662)PT(0.077)S(0.069)PT(0.002)EGEAS(0.002) KPVT(-24.77)VS(-14.56)PT(-6.09)T(6.09)PT(-9.36)S(-9.82)PT(-25.7)EGEAS(-25.07) 0 0 1 1 Q9Y6G9 Q9Y6G9 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.74951171875 3 655.973271 1964.89798 34822.1199742353 1.1977 0.00078566 232900 152.78 232900 152.78 809.082802573983 54.621 0.92554 54.621 54.119 55.044 0 111 31 5 0.861100198435946 0.00154486411618792 0.0113415531493568 0.047104 1 12672 64.589 51.756 8 102410000 8571.1 9692.7 8461.3 10637 10413 8700.8 10679 9481.3 12194 9222 8110.1 9161.7 8550.7 10833 10457 8834.8 10899 9758.1 11967 8903.1 1 1 1 1 1 1 1 1 1 1 2473 2313 2175 2298 2753 2753 4266;4858 KPVTVSPTTPTSPTEGEAS 19 Phospho (STY) _KPVTVS(ph)PTTPTSPTEGEAS_ KPVT(0.047)VS(0.857)PT(0.074)T(0.022)PTSPTEGEAS KPVT(-12.57)VS(10.65)PT(-10.65)T(-15.9)PT(-41.05)S(-51.67)PT(-73.34)EGEAS(-85.98) 0 0 1 1 Q9Y6G9 Q9Y6G9 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.085571289063 3 655.973271 1964.89798 34832.5338423745 1.4405 0.00094493 232900 152.78 232900 152.78 809.083568641871 55.544 0.55044 55.544 55.251 55.801 0 71 18 5 0.987344095567855 0.0027835386569801 0.0382736971816206 6.0699E-05 1 12935 110.57 99.292 8 43572000 9306.7 13702 8924.6 13682 12518 10696 10014 11074 12779 13654 8805.1 12943 9047.8 14001 12458 10884 10390 11505 12492 13113 1 1 1 1 1 1 1 1 1 1 2474 2313 2175 2298 2754 2754 4266;4858 KQEKTPK 7 Phospho (STY) _KQEKT(ph)PK_ KQEKT(1)PK KQEKT(58.98)PK 0 0 1 2 Q9NYF8;P06748 Q9NYF8;P06748 Q9NYF8 BCLAF1;NPM1 Bcl-2-associated transcription factor 1;Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 464.787200927734 4 235.373126 937.463397 47396.8671714826 1.0613 0.00024981 973620 229.16 973620 229.16 464.786859334307 31.249 0.83218 31.249 30.7 31.532 0 65 27 4 0.918949482998463 0.00267462452474243 0.0482459730853524 0.026011 1 6981 58.978 23.018 1 13337000 16309 20510 17474 20211 9196.7 18966 9758.6 15842 24393 4526.3 15437 19374 17428 20751 9843.3 19035 10307 16148 23448 4628.6 1 1 1 1 1 1 1 1 1 1 2475 2072;315 2176 2299 2755 2755 4376;4789 KQGGSPDEPDSK 12 Phospho (STY) _KQGGS(ph)PDEPDSK_ KQGGS(0.999)PDEPDS(0.001)K KQGGS(32.96)PDEPDS(-32.96)K 0 0 1 1 Q9ULX6 Q9ULX6 Q9ULX6 AKAP8L A-kinase anchor protein 8-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.349792480469 3 442.185406 1323.53439 38083.2395813781 2.3537 0.0010408 518250 229.16 518250 229.16 671.348656775881 33.696 0.66741 33.696 33.467 34.134 0 66 22 4 0.830020938918425 0.00793671969927577 0.174490613643937 9.0982E-05 1 7543 119.46 92.747 2 41508000 30872 49976 28876 45769 41636 30928 32454 40763 51081 16671 29206 47187 29331 47013 41387 31818 33986 41009 49611 16642 1 1 1 1 1 1 1 1 1 1 2476 2195 2177 2300 2756 2756 3977 KQITMEELVR 10 Phospho (STY) _KQIT(ph)MEELVR_ KQIT(1)MEELVR KQIT(93.51)MEELVR 0 0 1 1 Q15149 Q15149 Q15149 PLEC Plectin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.663269042969 3 442.887756 1325.64144 40755.1091709121 1.4991 0.00066394 344950 152.78 344950 152.78 595.663463487976 70.707 0.43692 70.707 70.507 70.944 0 35 14 4 0.632638131153362 0.00172119812338422 0.0320684068081432 0.0091528 1 16604 93.51 67.151 1 14176000 12517 10155 12578 11453 6232.5 12162 7112.9 10567 12910 4753.1 11844 9600.7 12586 11691 6717.4 12148 7356.8 10804 12493 4720.2 1 1 1 1 1 1 1 1 1 1 2477 1061 2178 2301 2757 2757 4566 KQITTSPITVR 11 Phospho (STY) _KQITTS(ph)PITVR_ KQIT(0.072)T(0.1)S(0.826)PIT(0.002)VR KQIT(-10.59)T(-9.17)S(9.17)PIT(-25.74)VR 0 0 1 1 O95835 O95835 O95835 LATS1 Serine/threonine-protein kinase LATS1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.016235351563 3 441.905915 1322.69592 41090.0463845707 1.4008 0.00061901 345720 152.78 345720 152.78 594.681354804735 56.147 0.74363 56.147 55.921 56.664 -7.1054E-15 59 24 4 0.955942112579336 0.00384868903029832 0.0442210968447879 0.0090443 1 13095 77.1 56.147 4 34126000 12494 19594 14208 18139 11389 14347 11525 16188 19538 4692 11829 18501 14174 18652 11734 14582 11944 16308 18938 4792.7 1 1 1 1 1 1 1 1 1 1 2478 268 2179 2302 2758 2758 448;4361 KQKSYTLVVAK 11 Phospho (STY) _KQKS(ph)YTLVVAK_ KQKS(0.997)YT(0.003)LVVAK KQKS(24.69)Y(-43.11)T(-24.69)LVVAK 0 0 1 2 O43491 O43491 O43491 EPB41L2 Band 4.1-like protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.467529296875 3 448.914411 1343.7214 NaN NaN NaN NaN NaN NaN NaN NaN 61.902 1 61.902 61.402 62.402 0 NaN NaN NaN 0.035357 1 14528 80.534 58.661 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2479 114 2180 2303 2759 2759 198 KQKTDEDD 8 Unmodified _KQKTDEDD_ 0 0 0 2 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 555.980102539063 3 326.817333 977.430169 41735.6895506507 2.5243 0.00082499 701200 229.16 701200 229.16 555.980128507552 27.92 0.25749 27.92 27.751 28.008 -3.5527E-15 17 8 3 0.594600022803274 0.00168364924030951 0.0360361910746776 0.014811 1 6218 66.27 49.638 1 7690400 10963 6264.5 11827 6463.8 14022 12718 15393 11835 7376.2 2185.8 10377 5919 11889 6725.2 14112 12462 15383 11971 7618.1 2332.1 1 1 1 1 1 1 1 1 1 1 2480 311 2181 2304 2760 2760 KQKTDEDD 8 Phospho (STY) _KQKT(ph)DEDD_ KQKT(1)DEDD KQKT(68.07)DEDD 0 0 1 2 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.451721191406 2 529.705526 1057.3965 33994.1123323293 2.3994 0.001271 648940 343.74 648940 343.75 873.44992356884 29.378 1.1496 29.378 29.163 30.313 3.5527E-15 80 38 3 0.969820842681673 0.00124197974356864 0.0476771104565904 0.011133 1 6524 68.069 50.205 1 15566000 15407 10191 14631 8743.4 19890 16276 19448 15510 8973.4 1664.6 14576 9618.7 14841 9186.9 19858 15971 19531 15638 9298.3 1926.4 1 1 1 1 1 1 1 1 1 1 2481 311 2181 2305 2761 2761 4372 KQPPVSPGTALVGSQK 16 Phospho (STY) _KQPPVSPGTALVGS(ph)QK_ KQPPVSPGTALVGS(1)QK KQPPVS(-75.82)PGT(-56.5)ALVGS(56.5)QK 0 0 1 1 P17096 P17096 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.123474121094 3 558.625588 1672.85494 35617.8475374682 1.9383 0.0010828 410230 229.16 410230 229.16 787.788819697528 60.899 0.46665 60.899 60.628 61.095 0 51 15 4 0.983556429861904 0.00442615142071434 0.0406285048047919 2.7981E-08 1 14263 174.55 157.06 3 32248000 7531.7 11465 10761 12252 29262 10015 33601 18306 14680 11236 7139 10835 10884 12496 28646 10263 33476 18380 15287 11004 1 1 1 1 1 1 1 1 1 1 2482 415 2182 2306 2762 2762 670;671 KQPPVSPGTALVGSQK 16 Phospho (STY) _KQPPVS(ph)PGTALVGSQK_ KQPPVS(0.916)PGT(0.084)ALVGSQK KQPPVS(10.37)PGT(-10.37)ALVGS(-81.43)QK 0 0 1 1 P17096 P17096 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.124267578125 3 558.625588 1672.85494 35411.6113718061 1.9034 0.0010633 410230 229.16 410230 229.16 788.123025365705 62.113 0.75193 62.113 61.771 62.523 0 112 25 6 0.969040354744779 0.0131817318299448 0.0945544180396931 1.4747E-10 1 14545 183.05 155.19 3 310130000 30841 77903 34422 76162 29836 31088 32540 51344 85368 13288 29197 73583 34404 77582 30636 33452 34439 51117 81992 13700 1 1 1 1 1 1 1 1 1 1 2483 415 2182 2306 2763 2763 670;671 KQRSPAK 7 Phospho (STY) _KQRS(ph)PAK_ KQRS(1)PAK KQRS(62.82)PAK 0 0 1 2 Q9UQR1 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 527.986633300781 3 298.823415 893.448416 43738.7410982314 1.2792 0.00038225 766890 229.16 766890 229.16 527.98642337278 25.527 0.31888 25.527 25.356 25.675 0 24 10 3 0.960468971928149 0.00422102989156817 0.08246303919568 0.025528 1 5702 62.823 28.015 1 10351000 11844 6476.4 13384 6601.6 8823.2 12493 8046.5 10037 7342.5 3284.4 11213 6118.8 13331 6865.3 9211.4 12235 8208.6 10262 7274.7 3325 1 1 1 1 1 1 1 1 1 1 2484 2234 2183 2307 2764 2764 4130 KQSDSVK 7 Phospho (STY) _KQSDS(ph)VK_ KQS(0.01)DS(0.99)VK KQS(-19.82)DS(19.82)VK 0 0 1 1 P84101 P84101 P84101 SERF2 Small EDRK-rich factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 520.298767089844 3 291.135547 870.384812 42869.6370526067 1.2975 0.00037775 787140 229.16 787140 229.16 520.298569432654 32.95 0.6048 32.95 32.679 33.284 0 56 20 4 0.903486010836337 0.00679746450221853 0.153124343258414 0.0078402 1 7373 86.014 39.195 2 31205000 35688 25457 34090 28107 19923 35738 19317 29661 27661 1687.5 33764 24063 34244 28820 21053 35409 19920 30039 26940 2275.5 1 1 1 1 1 1 1 1 1 1 2485 813 2184 2308 2765 2765 1298 KQSDSVKGK 9 Phospho (STY) _KQSDS(ph)VKGK_ KQS(0.149)DS(0.851)VKGK KQS(-7.55)DS(7.55)VKGK 0 0 1 2 P84101 P84101 P84101 SERF2 Small EDRK-rich factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.726196289063 3 352.841023 1055.50124 39264.9503988645 1.7616 0.00062158 865970 305.55 865970 305.55 658.391477205438 34.511 0.55061 34.511 34.282 34.832 7.1054E-15 42 18 4 0.974941090710994 0.00262587282156934 0.0114546935935605 0.034643 1 7751 56.122 30.464 2 37478000 29928 19297 31143 20147 20986 33439 22851 22182 22234 4934 28324 18234 31168 20848 21922 32792 23154 22835 21964 5159.4 1 1 1 1 1 1 1 1 1 1 2486 813 2185 2309 2766 2766 1298 KQSLGELIGTLNAAK 15 Phospho (STY) _KQS(ph)LGELIGTLNAAK_ KQS(1)LGELIGTLNAAK KQS(82)LGELIGT(-82)LNAAK 0 0 1 1 P60174 P60174 P60174 TPI1 Triosephosphate isomerase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.785949707031 3 541.621955 1621.84404 35986.5817601986 2.3302 0.0012621 423100 229.16 423110 229.16 771.119014652355 97.406 1.7666 97.406 97.097 98.863 0 216 60 6 0.983854860103208 0.00275467829537351 0.0450970103660724 8.7511E-16 3 22586 223.97 191.23 2 176390000 17816 17230 18601 16792 32494 19267 35044 24878 15741 40786 16861 16274 18860 17308 32172 19349 35021 25966 16350 38981 3 3 3 3 3 3 3 3 3 3 2487 738 2186 2310 2767;2768;2769 2767 1223 KQSLPATSIPTPASFK 16 Phospho (STY) _KQS(ph)LPATSIPTPASFK_ KQS(0.892)LPAT(0.1)S(0.009)IPTPASFK KQS(9.51)LPAT(-9.51)S(-20.2)IPT(-60.59)PAS(-104.23)FK 0 0 1 1 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.46826171875 3 584.969244 1751.8859 35686.9506973395 2.1407 0.0012522 391750 229.16 391750 229.16 814.131883570672 80.808 0.70077 80.808 80.404 81.105 0 76 23 5 0.96408031275237 0.00546266482541301 0.0603900135255378 5.1918E-07 1 18893 148.52 104.01 5 40961000 14013 10938 12371 9078.3 33342 15018 29682 20058 11330 18150 13253 10322 12801 9530.3 32528 14886 29887 20471 11958 17554 1 1 1 1 1 1 1 1 1 1 2488 655 2187 2311 2770 2770 1097 KQSSSEISLAVER 13 Phospho (STY) _KQS(ph)SSEISLAVER_ KQS(0.976)S(0.023)S(0.001)EISLAVER KQS(16.29)S(-16.29)S(-30.16)EIS(-68.67)LAVER 0 0 1 1 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.023986816406 3 505.246777 1512.7185 38762.0713443867 2.1197 0.001071 302380 152.78 302380 152.78 658.022395833268 57.414 0.7191 57.414 56.985 57.704 7.1054E-15 65 24 4 0.955648911341062 0.0027042757904524 0.0399155550657297 5.361E-07 1 13394 149.53 120.51 4 48071000 11645 12840 13345 15119 14574 12354 15777 14850 15137 5758.7 11025 12143 13357 15341 14734 12548 15984 14972 14963 5766.2 1 1 1 1 1 1 1 1 1 1 2489 624 2188 2312 2771 2771 1029 KQSVNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVR 36 Phospho (STY) _KQS(ph)VNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVR_ KQS(1)VNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVR KQS(34.94)VNIS(-34.94)LS(-61.57)GCQPAPEGY(-178.64)S(-174.55)PT(-197.92)LQWQQQQVAQFS(-329.49)T(-332.44)VR 0 0 1 1 O14893 O14893 O14893 GEMIN2 Gem-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1147.82946777344 4 1032.74657 4126.95719 28723.7585377809 1.4431 0.0014903 110950 114.58 110950 114.58 1148.0793028866 90.506 0.53913 90.506 90.25 90.789 0 92 18 7 0.988604807929438 0.00711977003694047 0.208960915596618 7.0596E-46 2 21089 337.63 319.65 8 47511000 4027.2 2355.6 5159.7 3744.5 3576.2 3096.1 5027.3 5766.1 4115.2 69073 3815 2233.2 5113.8 3749.6 3742.3 3295.9 5022.7 7761.6 4099.2 65174 2 2 2 2 2 2 2 2 2 2 2490 69 2189 2313 2772;2773 2772 115 KQVNYNDGSQEDR 13 Phospho (STY) _KQVNYNDGS(ph)QEDR_ KQVNYNDGS(1)QEDR KQVNY(-104.54)NDGS(104.54)QEDR 0 0 1 1 Q14839 Q14839 Q14839 CHD4 Chromodomain-helicase-DNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.002380371094 3 544.893174 1631.65769 37671.2127292177 0.99369 0.00054146 280380 152.78 280380 152.78 697.668456538552 34.146 0.61513 34.146 33.905 34.52 0 47 20 4 0.972523425216975 0.00227171810330372 0.0101162933746402 8.2262E-06 1 7654 137.27 111.95 2 38926000 22643 15643 24192 13611 28313 23408 32573 26158 17243 4854.4 21432 14766 24330 14257 28535 23069 32533 26278 17664 5176.3 1 1 1 1 1 1 1 1 1 1 2491 1030 2190 2314 2774 2774 1768 KRASIQR 7 Phospho (STY) _KRAS(ph)IQR_ KRAS(1)IQR KRAS(56.36)IQR 0 0 1 2 Q9UBW5 Q9UBW5 Q9UBW5 BIN2 Bridging integrator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 466.278015136719 3 313.502564 937.485864 46091.8409022962 0.21788 6.8306E-05 487320 152.78 487320 152.78 466.277899843942 25.69 0.45791 25.69 25.471 25.929 -3.5527E-15 48 15 5 0.953975461136325 0.030583574816587 0.28551015776668 0.0381 1 5725 56.359 20.025 1 108020000 69225 5487.5 72997 5648 127710 69584 117400 67063 5813.6 3912.2 65518 5184.7 73938 6816.7 126120 66869 116940 67484 10469 5235.9 1 1 1 1 1 1 1 1 1 1 2492 2131 2191 2315 2775 2775 3832 KRDAEDDGEEEDD 13 Unmodified _KRDAEDDGEEEDD_ 0 0 0 2 Q9BTT0 Q9BTT0 Q9BTT0 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.973693847656 3 508.197378 1521.5703 38509.2777793809 1.9952 0.001014 300620 152.78 300620 152.78 660.973231402875 26.307 1.1936 26.307 26.045 27.238 3.5527E-15 123 40 6 0.986195998403294 0.016857229951056 0.35125045957007 6.9162E-16 2 5842 222.94 208.68 1 359760000 24811 13631 24339 12035 20109 25220 20107 18671 13324 3580.9 23476 12868 24483 12667 20650 24615 20282 19090 13435 3804 2 2 2 2 2 2 2 2 2 2 2493 1826 2192 2316 2776;2777 2776 KREPEDEGEDDD 12 Unmodified _KREPEDEGEDDD_ 0 0 0 2 P39687 P39687 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.303833007813 3 478.526947 1432.55901 38788.792526415 1.3566 0.00064919 319260 152.78 319260 152.78 631.302750890659 26.666 1.3071 26.666 26.187 27.494 0 197 44 7 0.996352720615288 0.0101403755978336 0.129287334694743 2.8457E-16 3 5899 198.57 193.4 1 1769000000 26285 21785 27554 22608 38724 23998 37427 29668 24202 6043.4 24877 20585 27807 23185 38607 24075 37798 29722 24441 6377.2 3 3 3 3 3 3 3 3 3 3 2494 567 2193 2317 2778;2779;2780 2779 KRESESESDETPPAAPQLIK 20 Phospho (STY) _KRES(ph)ESESDETPPAAPQLIK_ KRES(0.744)ES(0.2)ES(0.054)DET(0.001)PPAAPQLIK KRES(5.7)ES(-5.7)ES(-11.38)DET(-28.21)PPAAPQLIK 0 0 1 2 O60832 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.89599609375 4 573.774335 2291.06824 38303.3326515966 1.7662 0.0010134 299550 171.87 299550 171.87 745.897083587355 59.733 0.65542 59.733 59.539 60.194 7.1054E-15 48 22 3 0.944168319146381 0.000588074083667063 0.00327457288623591 9.1596E-08 1 14016 155.11 130.28 4 14750000 7198.9 8527.7 6536.1 8365.3 6127 7609.5 6875.1 7337.6 10420 11412 6809.5 8054.9 6616 8587 6255.7 7679.2 7059.4 7714.5 10131 10916 1 1 1 1 1 1 1 1 1 1 2495 159 2194 2318 2781 2781 272 KRETDDEGEDD 11 Phospho (STY) _KRET(ph)DDEGEDD_ KRET(1)DDEGEDD KRET(162.37)DDEGEDD 0 0 1 2 Q92688 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.276611328125 3 463.499831 1387.47766 39675.3056698119 1.5027 0.0006965 329610 152.78 329610 152.78 616.274909084625 25.868 0.83241 25.868 25.299 26.131 0 78 28 3 0.953456142849529 0.00364437791052994 0.0505683870755702 9.5045E-07 1 5696 162.37 156.53 1 35957000 4270.7 5200.1 4099.5 5276.6 4393.4 3606.6 5968.6 4430.5 6292.2 2963.4 4040.5 4912.8 4144.4 5386.3 4463.7 3705.6 6008.8 4501.5 6194.8 2892.9 1 1 1 1 1 1 1 1 1 1 2496 1616 2195 2319 2782 2782 4715 KRETDDEGEDD 11 Phospho (STY) _KRET(ph)DDEGEDD_ KRET(1)DDEGEDD KRET(188.63)DDEGEDD 0 0 1 2 Q92688 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.276000976563 3 463.499831 1387.47766 39828.5414513618 1.6968 0.00078645 329610 152.78 329610 152.78 616.275157917671 27.095 7.86 27.095 26.102 33.962 -3.5527E-15 454 269 2 0.973940555451371 0.00702514004623689 0.047278123945568 7.9503E-10 2 6048 188.63 181.93 1 64043000 25044 33884 25680 35904 25129 24194 25748 30551 34918 8425.5 23701 32021 25817 36554 25551 24869 26430 30652 34064 8640.7 2 2 2 2 2 2 2 2 2 2 2497 1616 2195 2319 2783;2784 2783 4715 KRETDDEGEDD 11 Phospho (STY) _KRET(ph)DDEGEDD_ KRET(1)DDEGEDD KRET(98)DDEGEDD 0 0 1 2 Q92688 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.909973144531 2 694.746108 1387.47766 32787.0424728874 2.1883 0.0015203 329850 229.16 329850 229.16 923.909146590954 27.785 7.9524 27.785 25.356 33.309 0 608 272 3 0.984885226496067 0.00193172163448489 0.026937223977183 0.001152 5 6397 98 90.974 1 21719000 32674 55948 33834 55454 47313 31758 48300 48445 61598 13782 30922 52849 34169 56588 47244 33126 49482 48363 60215 14099 5 5 5 5 5 5 5 5 5 5 2498 1616 2195 2319 2785;2786;2787;2788;2789 2786 4715 KRETDDEGEDD 11 Phospho (STY) _KRET(ph)DDEGEDD_ KRET(1)DDEGEDD KRET(72.68)DDEGEDD 0 0 1 2 Q92688 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.910766601563 2 694.746108 1387.47766 32874.315544581 1.9133 0.0013293 329850 229.16 329850 229.16 924.410352801801 33.436 0.74423 33.436 33.361 34.105 0 43 25 2 0.938470725401285 0.000233734302186027 0.00498339917816099 0.0086099 1 7569 72.681 63.723 1 10423000 5777 8002.6 5567.2 7821.3 8029.2 5100.1 8833.3 8193.4 8306.8 2866.6 5465.7 7558.8 5649.5 7998 8013.6 5277.8 8938.5 8185.1 8218.6 2888.9 1 1 1 1 1 1 1 1 1 1 2499 1616 2195 2319 2790 2790 4715 KRETDDEGEDD 11 Phospho (STY) _KRET(ph)DDEGEDD_ KRET(1)DDEGEDD KRET(86.94)DDEGEDD 0 0 1 2 Q92688 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.910705566406 2 694.746108 1387.47766 NaN NaN NaN NaN NaN NaN NaN NaN 26.352 1 26.352 25.852 26.852 0 NaN NaN NaN 0.015007 1 5873 86.944 80.091 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2500 1616 2195 2319 2791 2791 4715 KRPQSPSPR 9 Phospho (STY) _KRPQS(ph)PSPR_ KRPQS(0.992)PS(0.008)PR KRPQS(20.67)PS(-20.67)PR 0 0 1 2 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.968444824219 3 378.192278 1131.55501 43074.4088553439 1.5512 0.00058664 403960 152.78 403960 152.78 530.967713408542 23.54 0.46293 23.54 23.353 23.816 3.5527E-15 55 15 5 0.915743945465755 0.0360929449441064 0.841625819631232 0.0064804 1 5268 89.189 54.656 2 47047000 17712 10363 16692 12334 12699 16814 13469 14125 11493 1125.7 16756 9800.6 16819 12616 13131 16622 13619 14307 11424 1386.9 1 1 1 1 1 1 1 1 1 1 2501 1774 2196 2320 2792 2792 3266;3267 KRPQSPSPR 9 2 Phospho (STY) _KRPQS(ph)PS(ph)PR_ KRPQS(1)PS(1)PR KRPQS(45.92)PS(45.92)PR 0 0 2 2 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.957458496094 3 404.847722 1211.52134 41339.2556526964 1.5386 0.00062289 377360 152.77 377370 152.78 557.623098067885 24.59 1.4217 24.59 24.195 25.616 3.5527E-15 123 48 3 0.990972211002548 0.00296022571781327 0.00970579270946095 0.041824 1 5476 45.915 23.441 1 11147000 5442.5 5134.6 6175.3 5615.9 4978 6064.9 4732.4 5367.2 4696.7 2700.8 5152.7 4853.2 6160.9 5744.1 5118.9 6055.5 4828 5492.1 4635.7 2667.4 1 1 1 1 1 1 1 1 1 1 2502 1774 2196 2321 2793 2793 3266;3267 KRSEGFSMDR 10 Oxidation (M),Phospho (STY) _KRS(ph)EGFSM(ox)DR_ KRSEGFSM(1)DR KRS(1)EGFSMDR KRSEGFSM(56.53)DR KRS(35.72)EGFS(-35.72)MDR 0 1 1 2 Q7Z4V5 Q7Z4V5 Q7Z4V5 HDGFRP2 Hepatoma-derived growth factor-related protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 589.628784179688 3 436.851593 1307.53295 40232.0543655934 2.1408 0.0009352 349720 152.78 349720 152.78 589.62760456155 30.001 0.50368 30.001 29.721 30.224 0 63 16 5 0.89767229794887 0.00206921177378508 0.0314170135730842 0.018736 1 6656 56.527 27.571 2 61411000 19772 11738 17851 11286 14299 19160 13820 14849 12025 2752.2 18702 11085 18041 11743 14712 18805 14042 15145 11941 2935.2 1 1 1 1 1 1 1 1 1 1 2503 1343 2197 2322 2794 2794 164 2423 KRSEGFSMDR 10 Phospho (STY) _KRS(ph)EGFSMDR_ KRS(1)EGFSMDR KRS(52.01)EGFS(-52.01)MDR 0 0 1 2 Q7Z4V5 Q7Z4V5 Q7Z4V5 HDGFRP2 Hepatoma-derived growth factor-related protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 584.296264648438 3 431.519955 1291.53804 40724.3203574227 1.3838 0.00059715 354040 152.78 354040 152.78 584.295170794343 40.134 0.76609 40.134 39.833 40.599 0 85 25 5 0.992072250220532 0.00569800335463619 0.0269260773705612 0.0021734 1 9100 97.797 49.138 2 154740000 53968 30851 64097 31435 44349 59703 49103 48886 30863 4793.9 51105 29147 63727 32695 46222 58455 49254 49599 31226 5645.4 1 1 1 1 1 1 1 1 1 1 2504 1343 2197 2323 2795 2795 2423 KRSGEAAV 8 Phospho (STY) _KRS(ph)GEAAV_ KRS(1)GEAAV KRS(70.49)GEAAV 0 0 1 2 P08237 P08237 P08237 PFKM ATP-dependent 6-phosphofructokinase, muscle type MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 452.586456298828 3 299.811175 896.411696 46393.6585039669 1.0061 0.00030163 509570 152.78 509570 152.78 452.586400292558 31.399 0.61503 31.399 31.059 31.674 0 53 20 3 0.72969161555001 0.00246335206592568 0.0386033828760505 0.017843 1 7001 70.488 58.72 1 29040000 18567 14859 18151 13823 22653 17453 22440 19304 16809 1993.1 17567 14031 18356 14315 22714 17359 22698 19351 16825 2323.5 1 1 1 1 1 1 1 1 1 1 2505 330 2198 2324 2796 2796 538 KRSGEAK 7 Phospho (STY) _KRS(ph)GEAK_ KRS(1)GEAK KRS(77.14)GEAK 0 0 1 2 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 386.479888916016 4 214.607559 854.401131 50319.2433300388 -0.27232 -5.8443E-05 800870 171.87 800870 171.87 386.479846059421 25.34 0.43527 25.34 25.181 25.616 0 34 14 4 0.857861980761996 0.00439209065981255 0.0367396364898397 0.0099214 1 5650 77.14 10.027 1 9594100 18906 25453 18780 23353 18180 18039 19137 22101 26835 5107.2 17890 24033 18912 24020 18505 18379 19645 22166 26152 5320.6 1 1 1 1 1 1 1 1 1 1 2506 1953 2199 2325 2797 2797 3555 KRSGNSDSIER 11 Phospho (STY) _KRS(ph)GNSDSIER_ KRS(0.994)GNS(0.006)DS(0.001)IER KRS(22.55)GNS(-22.55)DS(-32.3)IER 0 0 1 2 Q7Z2E3 Q7Z2E3 Q7Z2E3 APTX Aprataxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 596.312133789063 3 443.536662 1327.58816 41223.2333477362 1.5253 0.00067655 344450 152.77 344450 152.78 596.311599210851 25.828 0.59843 25.828 25.647 26.245 0 48 20 4 0.835455271620284 0.00616355109143541 0.0249093148693435 0.0050487 1 5751 91.932 33.816 3 42690000 10282 13914 10950 10530 9124.7 11345 10891 10885 12951 1934.4 9731.8 13125 10969 11032 9394.5 11333 11058 10995 12691 2073.4 1 1 1 1 1 1 1 1 1 1 2507 1325 2200 2326 2798 2798 2374 KRSISESSR 9 Phospho (STY) _KRS(ph)ISESSR_ KRS(0.999)IS(0.001)ESSR KRS(30.81)IS(-30.81)ES(-71.89)S(-96.54)R 0 0 1 2 Q9H307 Q9H307 Q9H307 PNN Pinin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.95947265625 3 377.18356 1128.52885 43222.1312455767 1.1197 0.00042233 405040 152.78 405040 152.78 529.959108044403 26.356 0.58316 26.356 26.187 26.771 0 61 19 5 0.994302778348685 0.0253089237485098 0.3144036080397 0.0002283 1 5866 126.09 80.96 4 105910000 36071 20573 37917 18497 64867 34843 68130 45701 19728 4101.9 34140 19423 38411 19381 64236 34339 67868 45544 21519 4920.2 1 1 1 1 1 1 1 1 1 1 2508 1926 2201 2327 2799 2799 3495 KRSPGGSGGASR 12 Phospho (STY) _KRS(ph)PGGSGGASR_ KRS(1)PGGSGGASR KRS(50.09)PGGS(-50.09)GGAS(-50.09)R 0 0 1 2 Q7Z2K6 Q7Z2K6 Q7Z2K6 ERMP1 Endoplasmic reticulum metallopeptidase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.297912597656 3 399.522576 1195.5459 41826.1850288183 2.0928 0.00083611 382390 152.78 382400 152.78 552.297819028459 21.524 0.43037 21.524 21.371 21.801 0 50 14 5 0.985520482184665 0.0157454315126536 0.106734664939924 0.015437 1 4853 72.523 55.806 3 25259000 9941.7 8524.9 10435 7265.1 9514 9400.1 10026 9814.8 9723.5 1940 9409.2 8046 10469 7570.8 9716.2 9335.8 10173 9887.3 9607 2053.9 1 1 1 1 1 1 1 1 1 1 2509 1326 2202 2328 2800 2800 2375 KRSPSPSPTPEAK 13 2 Phospho (STY) _KRS(ph)PS(ph)PSPTPEAK_ KRS(0.985)PS(0.97)PS(0.04)PT(0.006)PEAK KRS(18.5)PS(15.56)PS(-15.56)PT(-23.97)PEAK 0 0 2 2 Q8TAQ2 Q8TAQ2 Q8TAQ2 SMARCC2 SWI/SNF complex subunit SMARCC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.061828613281 3 514.563539 1540.66879 36557.4943369303 1.7474 0.00089912 445350 229.16 445360 229.16 743.72680869973 35.795 2.2962 35.795 34.915 37.211 0 252 71 5 0.889726607309924 0.0112152178350787 0.152995682486965 0.0001548 2 8102 110.77 80.876 6 116970000 94378 97043 90115 97831 109090 94277 114980 112770 111080 23134 89289 91677 91229 100340 109660 94932 116650 113100 109770 24393 2 2 2 2 2 2 2 2 2 2 2510 1534 2203 2329 2801;2802 2801 2819;2820 KRSSISK 7 Phospho (STY) _KRSS(ph)ISK_ KRS(0.077)S(0.923)ISK KRS(-10.81)S(10.81)IS(-60.7)K 0 0 1 2 Q9H4L5 Q9H4L5 Q9H4L5 OSBPL3 Oxysterol-binding protein-related protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 393.991363525391 4 222.119297 884.448081 51080.4235723833 0.22015 4.8899E-05 773780 171.87 773780 171.87 393.99138970754 31.622 0.40489 31.622 31.386 31.791 0 23 13 2 0.740592077504748 0.000631075536443243 0.00857461686736836 0.0049686 1 7051 91.265 22.531 3 7117200 8045.1 19322 9899.8 17570 10829 10042 10603 13132 20802 1768 7619.6 18242 9872.9 18026 10941 10444 11083 13106 20093 1968.7 1 1 1 1 1 1 1 1 1 1 2511 1939 2204 2330 2803 2803 3511 KRSSLSPGR 9 2 Phospho (STY) _KRSS(ph)LS(ph)PGR_ KRS(0.124)S(0.881)LS(0.995)PGR KRS(-8.67)S(8.67)LS(22.4)PGR 0 0 2 2 Q9BUQ8 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 535.948181152344 3 383.172206 1146.49479 42556.4686236224 1.3787 0.00052828 398710 152.78 398710 152.78 535.947745838775 29.572 3.035 29.572 28.695 31.73 3.5527E-15 296 102 5 0.906859309587422 0.00412359979075691 0.119105604521976 0.018351 2 6711 61.167 43.679 3 48956000 33202 31928 34865 35711 32481 34288 35652 33071 35837 4502.8 31424 30183 34988 36414 33147 34425 36143 33356 35353 5005.4 2 2 2 2 2 2 2 2 2 2 2512 1835 2205 2331 2804;2805 2805 3359;3360 KRSSSEDAESLAPR 14 Phospho (STY) _KRS(ph)SSEDAESLAPR_ KRS(0.979)S(0.021)SEDAESLAPR KRS(16.7)S(-16.7)S(-39.48)EDAES(-80.58)LAPR 0 0 1 2 Q4G0J3 Q4G0J3 Q4G0J3 LARP7 La-related protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.025390625 3 538.249069 1611.72538 38228.2601380203 1.6449 0.00088539 283840 152.78 283840 152.78 691.358662633969 37.661 0.70182 37.661 37.421 38.123 0 72 24 4 0.970058479874685 0.00322749137594482 0.0110839787652509 1.0215E-22 1 8503 267.56 234.56 4 90428000 28582 17799 30076 18896 20025 30351 22269 24354 18776 3714.6 27051 16820 30080 19519 20943 29842 22464 24773 18674 4061.4 1 1 1 1 1 1 1 1 1 1 2513 1138 2206 2332 2806 2806 1980 KSAPATGGVK 10 Phospho (STY) _KS(ph)APATGGVK_ KS(0.994)APAT(0.006)GGVK KS(22.31)APAT(-22.31)GGVK 0 0 1 1 Q71DI3;Q16695;P68431 Q71DI3 Q71DI3 HIST2H3A;HIST3H3;HIST1H3A Histone H3.2;Histone H3.1t;Histone H3.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.999328613281 3 332.50223 994.484861 40828.6540808713 1.6836 0.00055981 689210 229.16 689210 229.16 561.665335039549 40.045 0.46251 40.045 39.803 40.265 0 44 15 4 0.883358443346525 0.00385978749181429 0.0161911445454936 0.0061018 1 9109 84.946 58.903 2 56057000 29327 44689 27581 52775 24279 30732 29627 40173 54624 4190.6 27744 42262 27843 53340 24933 31914 30585 40056 52837 4875.7 1 1 1 1 1 1 1 1 1 1 2514 790 2207 2333 2807 2807 1263 KSDASDMNSDTSPSCR 16 Phospho (STY) _KSDASDMNSDTS(ph)PSCR_ KSDASDMNS(0.001)DT(0.111)S(0.886)PS(0.002)CR KS(-76.31)DAS(-56.51)DMNS(-28.92)DT(-9.02)S(9.02)PS(-25.77)CR 0 0 1 1 Q86WR7 Q86WR7 Q86WR7 PROSER2 Proline and serine-rich protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.33837890625 3 613.229129 1836.66556 36167.8015641115 2.1376 0.0013109 249130 152.77 249130 152.78 766.337428337472 31.463 0.4924 31.463 31.21 31.702 0 41 16 3 0.956129667889289 0.00129357819559828 0.0230357576418641 0.0012743 1 7030 98.684 80.589 6 8124200 10617 10729 10456 11462 6435.5 10111 6491.9 10931 12021 2343.7 10046 10140 10489 11703 6774.1 10209 6756.8 11004 11626 2459.8 1 1 1 1 1 1 1 1 1 1 2515 1392 2208 2334 2808 2808 2533 KSDKNPNSPR 10 Phospho (STY) _KSDKNPNS(ph)PR_ KSDKNPNS(1)PR KS(-39.84)DKNPNS(39.84)PR 0 0 1 2 Q14CW9 Q14CW9 Q14CW9 ATXN7L3 Ataxin-7-like protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 637.355407714844 3 408.190715 1221.55031 39423.5369963278 2.0463 0.0008353 561410 229.16 561410 229.16 637.353889975622 26.434 0.32268 26.434 26.245 26.568 0 29 10 4 0.876357289216904 0.00429147526024032 0.0737078826541927 0.027882 1 5888 59.68 38.741 2 13728000 8491.2 10027 7873 9766.5 9670.7 9666.8 9377.1 9252.3 9203.5 2078.2 8032.5 9470.4 7984.6 10042 9703.4 9692.7 9554.4 9359.4 9088.5 2171 1 1 1 1 1 1 1 1 1 1 2516 1040 2209 2335 2809 2809 1800 KSEAPAEVTHFSPK 14 Phospho (STY) _KSEAPAEVTHFS(ph)PK_ KSEAPAEVT(0.001)HFS(0.999)PK KS(-56.68)EAPAEVT(-28.44)HFS(28.44)PK 0 0 1 1 Q6PID6 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.815612792969 4 402.692086 1606.73924 42291.7706136042 1.4667 0.00059064 426810 171.87 426810 171.87 574.815516870111 54.263 0.38437 54.263 54.031 54.415 0 28 12 3 0.576363252815937 0.00111848898851744 0.00737413922322559 0.0030922 1 12669 93.269 73.875 3 15806000 10814 11576 10793 11561 10411 11160 13452 12284 12024 2323.3 10232 10936 10870 11865 10630 11223 13508 12348 11925 2471.9 1 1 1 1 1 1 1 1 1 1 2517 1267 2210 2336 2810 2810 2245 KSESDKDVK 9 Phospho (STY) _KSES(ph)DKDVK_ KS(0.208)ES(0.792)DKDVK KS(-5.81)ES(5.81)DKDVK 0 0 1 2 Q05519 Q05519 Q05519 SRSF11 Serine/arginine-rich splicing factor 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.391296386719 3 372.504188 1114.49073 38469.455492821 1.3273 0.00049444 820260 305.55 820260 305.55 678.388679386664 37.256 0.40598 37.256 37.015 37.421 0 25 16 2 0.652148817196174 0.0011151854868325 0.00431692231780475 0.01147 1 8398 78.763 49.422 2 40564000 14754 15631 15265 15183 19164 15602 21567 18140 15673 3990.6 13963 14763 15394 15623 19246 15660 21677 18218 15715 4177.5 1 1 1 1 1 1 1 1 1 1 2518 870 2211 2337 2811 2811 1412 KSHSPVK 7 Phospho (STY) _KSHS(ph)PVK_ KS(0.013)HS(0.987)PVK KS(-18.92)HS(18.92)PVK 0 0 1 1 P78549 P78549 P78549 NTHL1 Endonuclease III-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 517.3076171875 3 288.144266 861.410968 43775.0858542322 2.0082 0.00057865 795310 229.16 795310 229.16 517.306957626773 28.135 0.48362 28.135 27.981 28.465 3.5527E-15 46 16 4 0.710191402493644 0.00723496276897599 0.200512139555246 0.020716 1 6266 61.165 24.053 2 27684000 25943 19443 25172 18947 19245 28079 20665 20685 22674 3650.3 24546 18364 25321 19631 19902 27652 21023 21145 22288 3915.9 1 1 1 1 1 1 1 1 1 1 2519 805 2212 2338 2812 2812 1285 KSKSPTLR 8 2 Phospho (STY) _KS(ph)KS(ph)PTLR_ KS(0.979)KS(0.668)PT(0.354)LR KS(14.8)KS(2.89)PT(-2.89)LR 0 0 2 2 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 588.665466308594 3 359.501552 1075.48283 40925.3626794238 2.2431 0.0008064 637450 229.16 637450 229.16 588.66453631267 38.753 4.6409 38.753 38.154 42.795 7.1054E-15 408 160 5 0.887410241857865 0.0112977249852157 0.16575159108165 0.012788 1 8921 72.152 51.489 3 154120000 50149 51155 49508 48222 57305 45267 56050 55631 53502 3202 47452 48308 49982 49644 57672 45642 57044 55497 52899 4302.6 1 1 1 1 1 1 1 1 1 1 2520 963 2213 2339 2813 2813 1623;1624 KSLSGSPLK 9 Phospho (STY) _KSLSGS(ph)PLK_ KS(0.001)LS(0.006)GS(0.993)PLK KS(-32.37)LS(-22.17)GS(22.17)PLK 0 0 1 1 Q9UIG0 Q9UIG0 Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 562.004516601563 3 332.842364 995.505262 42184.4920311476 0.95597 0.00031819 688500 229.16 688500 229.16 562.004714007733 54.551 0.62803 54.551 54.268 54.896 7.1054E-15 47 21 3 0.941537950017064 0.000786973944624211 0.00263405381476619 0.011987 1 12710 67.964 34.768 3 21447000 12881 19658 12452 17858 10602 11981 10817 13191 20237 2402 12187 18560 12541 18352 10880 12291 11259 13257 19569 2567.1 1 1 1 1 1 1 1 1 1 1 2521 2158 2214 2340 2814 2814 3885 KSLSPGVSR 9 Phospho (STY) _KSLS(ph)PGVSR_ KS(0.008)LS(0.992)PGVSR KS(-20.87)LS(20.87)PGVS(-38.56)R 0 0 1 1 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 490.281799316406 3 337.505863 1009.49576 44336.2529618462 1.0883 0.00036732 452660 152.78 452660 152.78 490.281238200242 41.149 0.51322 41.149 40.911 41.424 0 51 17 4 0.83330327869262 0.00393581598185206 0.164565078054483 0.005395 1 9379 87.083 45.052 3 35943000 44404 30823 42836 26762 26328 39377 26650 33048 26920 1144 42012 29094 43022 27929 27697 38829 27120 33429 26551 1842.1 1 1 1 1 1 1 1 1 1 1 2522 2180 2215 2341 2815 2815 3933 KSNLDEEVNVIPPHTPVR 18 Phospho (STY) _KSNLDEEVNVIPPHT(ph)PVR_ KSNLDEEVNVIPPHT(1)PVR KS(-94.42)NLDEEVNVIPPHT(94.42)PVR 0 0 1 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.600463867188 4 531.767585 2123.04123 39274.6713813223 1.8231 0.00096946 215470 114.58 215470 114.58 646.59988718202 61.332 2.6263 61.332 60.716 63.343 -7.1054E-15 374 89 7 0.996617663634812 0.0169944755728916 0.425032791582292 2.411E-05 3 14291 121.5 86.115 2 224660000 51941 31071 52276 36170 29042 52982 28267 37483 34385 18843 49151 29381 52334 37097 30839 52197 28979 38767 33669 18610 3 3 3 3 3 3 3 3 3 3 2523 310 2216 2342 2816;2817;2818 2816 4370 KSPAKSPNPSTPR 13 2 Phospho (STY) _KS(ph)PAKS(ph)PNPSTPR_ KS(1)PAKS(0.765)PNPS(0.196)T(0.039)PR KS(46.42)PAKS(5.9)PNPS(-5.9)T(-12.93)PR 0 0 2 2 O76021 O76021 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.727478027344 3 509.563651 1525.66912 36815.4686750449 2.2694 0.0011564 449720 229.16 449730 229.16 738.726078327968 33.557 0.55063 33.557 33.384 33.934 0 47 18 3 0.876112246528806 0.00202460493754739 0.00951379845635777 0.0042375 1 7509 91.64 74.075 6 25012000 11810 27534 15199 29357 12372 14114 12376 18537 29776 2375.6 11188 26021 15075 29787 12739 14887 13074 18494 28642 2665.9 1 1 1 1 1 1 1 1 1 1 2524 210 2217 2343 2819 2819 367;368 KSPEIHR 7 Phospho (STY) _KS(ph)PEIHR_ KS(1)PEIHR KS(93.44)PEIHR 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 468.930786132813 3 316.155053 945.44333 45366.7275272348 0.49396 0.00015617 483230 152.78 483230 152.78 468.930708690918 28.939 0.49893 28.939 28.751 29.25 0 43 16 4 0.886264593422654 0.00546364445844402 0.0526324139464619 0.0048417 1 6438 93.442 46.214 1 33394000 23694 21293 25952 23627 37812 26840 37554 27691 20519 2507 22429 20128 26147 24168 37651 26775 37773 27819 20969 3001.6 1 1 1 1 1 1 1 1 1 1 2525 2257 2218 2344 2820 2820 4176 KSPEKNER 8 Phospho (STY) _KS(ph)PEKNER_ KS(1)PEKNER KS(55.04)PEKNER 0 0 1 2 P19525 P19525 P19525 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.664672851563 3 356.500889 1066.48084 41326.3036676206 1.3816 0.00049253 642810 229.16 642810 229.16 585.664270408928 26.78 0.29403 26.78 26.65 26.945 0 23 9 4 0.857762898400386 0.00365344662622909 0.0234056492626237 0.039223 1 5963 55.04 32.842 1 24409000 11344 14662 10310 14043 18502 12162 19079 14152 17523 2511.3 10731 13847 10542 14426 18299 12304 19350 14194 17356 2692.2 1 1 1 1 1 1 1 1 1 1 2526 439 2219 2345 2821 2821 715 KSPLSSILFSALDSDTR 17 Phospho (STY) _KS(ph)PLSSILFSALDSDTR_ KS(0.995)PLS(0.004)S(0.001)ILFSALDSDTR KS(24.13)PLS(-24.13)S(-28.73)ILFS(-46.68)ALDS(-50.96)DT(-60.41)R 0 0 1 1 Q7Z3B3 Q7Z3B3 Q7Z3B3 KANSL1 KAT8 regulatory NSL complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.761108398438 3 639.650351 1915.92922 35529.2853323912 1.3279 0.00084939 238840 152.78 238840 152.78 792.760611147484 101.23 0.17063 101.23 101.16 101.33 0 16 5 5 1 0.000162612761385535 0.00988399991577606 0.01538 1 23787 65.213 52.013 6 36862000 8660.4 10203 8250.2 9412.1 8021.5 6517.7 9556.8 10002 10671 54669 8193.4 9633.5 8331.1 9665.8 8176.5 6808.9 9684.8 11545 10482 51709 1 1 1 1 1 1 1 1 1 1 2527 1330 2220 2346 2822 2822 2392;2393;2394 KSPRPAGPQLFLPDPDPQR 19 Phospho (STY) _KS(ph)PRPAGPQLFLPDPDPQR_ KS(1)PRPAGPQLFLPDPDPQR KS(97.12)PRPAGPQLFLPDPDPQR 0 0 1 2 Q9BUH6 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.615112304688 4 549.77949 2195.08885 37921.2155667054 1.9253 0.0010585 208420 114.58 208420 114.58 664.612631843764 73.605 0.799 73.605 73.242 74.041 0 103 27 5 0.974855069436271 0.007110267928313 0.0599745599829653 0.0016443 1 17259 97.124 80.986 1 40501000 15006 10738 13468 16446 13981 16055 14559 13561 14361 6585 14193 10176 13658 16531 14166 16091 14787 13897 14179 6514.4 1 1 1 1 1 1 1 1 1 1 2528 1833 2221 2347 2823 2823 3354 KSPSSDSWTCADTSTER 17 Phospho (STY) _KSPS(ph)SDSWTCADTSTER_ KS(0.115)PS(0.769)S(0.113)DS(0.003)WTCADTSTER KS(-8.27)PS(8.27)S(-8.32)DS(-24.41)WT(-56.66)CADT(-98.27)S(-104.2)T(-102.66)ER 0 0 1 1 Q8N6T3 Q8N6T3 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.371948242188 3 665.598098 1993.77246 NaN NaN NaN NaN NaN NaN NaN NaN 47.782 1 47.782 47.282 48.282 0 NaN NaN NaN 1.1863E-08 1 11079 146.76 124.19 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2529 1481 2222 2348 2824 2824 2730 KSQEKPR 7 Phospho (STY) _KS(ph)QEKPR_ KS(1)QEKPR KS(55.4)QEKPR 0 0 1 2 P14868 P14868 P14868 DARS Aspartate--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.322326660156 3 318.158575 951.453895 42592.3258012062 2.369 0.00075371 720280 229.16 720280 229.16 547.321524627368 27.852 0.2581 27.852 27.723 27.981 0 24 8 4 0.850773366369329 0.0044117437496469 0.0528548344934701 0.039964 1 6198 55.401 20.513 1 23919000 13869 17084 14562 17226 14139 14641 13743 17130 17801 1785.9 13126 16140 14618 17637 14371 14825 14119 17140 17392 2078.1 1 1 1 1 1 1 1 1 1 1 2530 392 2223 2349 2825 2825 624 KSQSPSPK 8 Phospho (STY) _KSQS(ph)PSPK_ KS(0.373)QS(0.614)PS(0.012)PK KS(-2.17)QS(2.17)PS(-16.92)PK 0 0 1 1 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.646911621094 3 313.482947 937.427012 41642.1931401029 2.0658 0.0006476 731020 229.16 731030 229.16 542.646366784444 30.891 0.48005 30.891 30.672 31.152 0 33 15 3 0.89802478504728 0.00371728618611951 0.0825325695353855 0.0080177 1 6906 83.182 47.671 3 16465000 21874 15247 23336 16282 13254 20725 12860 18948 18901 2407.5 20704 14409 23290 16726 14045 20557 13275 19148 18393 2705.5 1 1 1 1 1 1 1 1 1 1 2531 1774 2224 2350 2826 2826 3268;3269;3270 KSQSPSPK 8 2 Phospho (STY) _KS(ph)QSPS(ph)PK_ KS(0.953)QS(0.338)PS(0.709)PK KS(11.51)QS(-3.57)PS(3.57)PK 0 0 2 1 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 569.301391601563 3 340.13839 1017.39334 41757.4695961643 1.3321 0.0004531 673730 229.16 673740 229.16 569.301314200383 34.237 1.3039 34.237 33.556 34.86 0 85 44 2 0.735356894963287 0.00131698647788039 0.00781289379011368 0.018574 1 7686 58.098 36.541 3 24700000 16404 15186 16990 14328 13330 16456 16517 17640 14352 2267.5 15525 14341 17035 14798 13787 16419 16600 17716 14253 2543.3 1 1 1 1 1 1 1 1 1 1 2532 1774 2224 2351 2827 2827 3268;3269;3270 KSRVSVSPGR 10 2 Phospho (STY) _KSRVS(ph)VS(ph)PGR_ KS(0.072)RVS(0.986)VS(0.942)PGR KS(-12.03)RVS(18.23)VS(12.03)PGR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 564.298889160156 3 411.523127 1231.54755 41719.5487858857 1.4689 0.00060448 371240 152.78 371240 152.78 564.29840853658 33.083 3.3585 33.083 32.117 35.475 0 268 115 3 0.984032622169013 0.00294045251074868 0.00755201293068211 0.040293 2 7459 47.575 27.359 3 65117000 38196 34860 39356 33117 39506 35596 41704 37225 38462 3852.1 36147 32921 39569 34150 40110 35596 42256 37392 38088 4488.8 2 2 2 2 2 2 2 2 2 2 2533 1436 2225 2352 2828;2829 2828 2637;2638 KSSADTEFSDECTTAER 17 Phospho (STY) _KSS(ph)ADTEFSDECTTAER_ KS(0.029)S(0.971)ADTEFSDECTTAER KS(-15.2)S(15.2)ADT(-39.42)EFS(-96.71)DECT(-172.44)T(-189.22)AER 0 0 1 1 Q9H6S0 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.704528808594 3 671.929625 2012.76704 36498.8629881057 1.4187 0.00095329 227370 152.77 227370 152.77 825.037621504286 45.444 0.40669 45.444 45.207 45.614 0 22 13 3 0.730629954203568 0.000507273309086605 0.00163463942799072 2.1909E-23 2 10447 282.77 249.53 6 43975000 51425 43166 54419 41643 42557 57800 43704 47227 44136 46630 48672 40769 54482 43110 43904 57170 44444 49187 43531 45001 2 2 2 2 2 2 2 2 2 2 2534 1947 2226 2353 2830;2831 2830 3537 KSSEASPTAQR 11 Phospho (STY) _KSSEAS(ph)PTAQR_ KSSEAS(0.98)PT(0.02)AQR KS(-47.64)S(-42.18)EAS(16.85)PT(-16.85)AQR 0 0 1 1 Q7Z569 Q7Z569 Q7Z569 BRAP BRCA1-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 567.298767089844 3 414.522241 1240.54489 40814.7696238921 1.823 0.00075566 368560 152.78 368560 152.78 567.297510278347 26.032 0.40077 26.032 25.844 26.245 -3.5527E-15 42 13 4 0.993897878589408 0.00491175431906508 0.0225078374608061 6.356E-07 1 5792 151.73 127.48 4 38637000 9394.4 10889 9793.6 9910.2 6140.5 10487 6030.3 9416.8 11217 1358.2 8891 10281 9793.7 10244 6450.5 10475 6285.7 9528.1 10848 1496.8 1 1 1 1 1 1 1 1 1 1 2535 1344 2227 2354 2832 2832 2425 KSSFNVSDVARPEAAGSPPEEGGCTEGTPAK 31 Phospho (STY) _KS(ph)SFNVSDVARPEAAGSPPEEGGCTEGTPAK_ KS(0.649)S(0.351)FNVSDVARPEAAGSPPEEGGCTEGTPAK KS(2.66)S(-2.66)FNVS(-38.76)DVARPEAAGS(-83.38)PPEEGGCT(-259.97)EGT(-327.32)PAK 0 0 1 2 Q92619 Q92619 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 976.23388671875 4 803.860502 3211.4129 31437.3435113068 1.2828 0.0010312 213810 171.87 213810 171.87 976.486718244107 62.577 0.84541 62.577 62.292 63.138 0 103 28 5 0.970696297771037 0.00367590007318475 0.0686946660594119 4.0511E-57 1 14655 375.21 350.72 6 64447000 21866 3133.8 24565 3026.4 10541 22228 8932.8 12023 3342 7068.8 20701 2959.7 24405 3422.5 11497 21309 9016.9 12669 3534.7 6934.4 1 1 1 1 1 1 1 1 1 1 2536 1612 2228 2355 2833 2833 2971;2972;2973 KSSFNVSDVARPEAAGSPPEEGGCTEGTPAK 31 2 Phospho (STY) _KSS(ph)FNVSDVARPEAAGS(ph)PPEEGGCTEGTPAK_ KS(0.441)S(0.499)FNVS(0.062)DVARPEAAGS(0.998)PPEEGGCTEGTPAK KS(-0.53)S(0.53)FNVS(-9.15)DVARPEAAGS(28.14)PPEEGGCT(-67.77)EGT(-102.04)PAK 0 0 2 2 Q92619 Q92619 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 996.227966308594 4 823.852084 3291.37923 31557.7721102903 1.9321 0.0015918 208620 171.87 208620 171.87 995.975365758458 65.343 0.5775 65.343 65.11 65.688 0 41 19 3 0.94766775644714 0.00124993691093693 0.037333170399755 8.9856E-08 1 15365 158.15 142.27 15 9294900 6143.4 2863.9 6003.1 2671.9 3789.8 6231.6 4075.6 4805.6 2492.4 20305 5812.7 2704.3 6026.3 2812.3 3979.1 6107.7 4091.5 5487.5 2526.4 19231 1 1 1 1 1 1 1 1 1 1 2537 1612 2228 2356 2834 2834 2971;2972;2973 KSSGEIVYCGQVFEKSPLR 19 Phospho (STY) _KSSGEIVYCGQVFEKS(ph)PLR_ KSSGEIVYCGQVFEKS(1)PLR KS(-94.07)S(-91.37)GEIVY(-83.89)CGQVFEKS(83.89)PLR 0 0 1 2 Q02543 Q02543 Q02543 RPL18A 60S ribosomal protein L18a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.900268554688 4 566.774981 2263.07082 36645.4207333582 2.0577 0.0011662 303250 171.87 303250 171.87 738.89829911363 71.552 0.66628 71.552 71.229 71.895 0 88 20 5 0.956734801945914 0.00262126731463196 0.0676083340835877 6.4903E-05 1 16770 104.05 84.074 4 20105000 4843.3 5348.4 5467.4 5320.3 5938.6 4776.7 6451.5 6025.2 4794.5 37717 4585.4 5052.3 5476.3 5455.7 6004.4 4898.9 6497.1 7131.8 4801 35654 1 1 1 1 1 1 1 1 1 1 2538 852 2229 2357 2835 2835 1375 KSSLTQEEAPVSWEK 15 Phospho (STY) _KSS(ph)LTQEEAPVSWEK_ KS(0.066)S(0.868)LT(0.066)QEEAPVSWEK KS(-11.21)S(11.21)LT(-11.21)QEEAPVS(-135.49)WEK 0 0 1 1 Q76L83 Q76L83 Q76L83 ASXL2 Putative Polycomb group protein ASXL2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.446411132813 3 600.280147 1797.81861 34100.8795371418 2.0351 0.0012216 381760 229.16 381760 229.16 829.444229292093 69.774 0.49878 69.774 69.546 70.045 0 52 16 4 0.961323814708016 0.00383775330694192 0.0688498974447467 1.0462E-15 1 16363 218.74 175.21 4 27585000 18143 9108.6 19884 10172 21118 18777 20360 20311 10462 15841 17175 8610.6 19936 10518 21337 18486 20490 20792 10742 15387 1 1 1 1 1 1 1 1 1 1 2539 1313 2230 2358 2836 2836 2347 KSSLVTSK 8 Phospho (STY) _KSS(ph)LVTSK_ KS(0.327)S(0.673)LVTSK KS(-3.13)S(3.13)LVT(-35.49)S(-52.57)K 0 0 1 1 O43768 O43768 O43768 ENSA Alpha-endosulfine MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 539.657836914063 3 310.494964 928.463063 42678.2742537938 0.45696 0.00014188 738060 229.16 738060 229.16 539.658632995172 48.333 0.81644 48.333 48.008 48.824 0 107 27 6 0.984385931738563 0.00236814016733658 0.0117324552228936 0.0033505 1 11159 95.428 55.274 4 686970000 22326 12854 23235 14177 26366 19770 27163 19620 12707 2061.4 21130 12150 23384 14566 26569 19569 27216 19748 13152 2395.1 1 1 1 1 1 1 1 1 1 1 2540 128 2231 2359 2837 2837 222;223 KSSPQKEVK 9 Phospho (STY) _KS(ph)SPQKEVK_ KS(0.593)S(0.407)PQKEVK KS(1.64)S(-1.64)PQKEVK 0 0 1 2 P54578 P54578 P54578 USP14 Ubiquitin carboxyl-terminal hydrolase 14 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.74169921875 3 370.856673 1109.54819 NaN NaN NaN NaN NaN NaN NaN NaN 37.266 1 37.266 36.766 37.766 0 NaN NaN NaN 0.044686 1 8415 71.241 50.578 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2541 711 2232 2360 2838 2838 1192;1193 KSSPSKDR 8 Phospho (STY) _KS(ph)SPSKDR_ KS(0.498)S(0.498)PS(0.004)KDR KS(0)S(0)PS(-21.29)KDR 0 0 1 2 Q9BUQ8 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.985717773438 3 328.821851 983.443724 41638.1808732394 1.7013 0.00055943 696920 229.16 696920 229.16 557.984980707335 25.631 1.183 25.631 25.27 26.453 0 120 40 6 0.983029382214486 0.0343456991708133 0.624173621619254 0.014755 1 5700 76.326 41.794 3 482670000 36743 38027 35368 36707 39758 30664 44204 38217 41066 3296.9 34763 35915 35755 37673 40148 31107 44696 38141 40653 3988.9 1 1 1 1 1 1 1 1 1 1 2542 1835 2233 2361 2839 2839 3361;3362 KSSPSTGSLDSGNESK 16 Phospho (STY) _KSS(ph)PSTGSLDSGNESK_ KS(0.239)S(0.675)PS(0.085)T(0.001)GSLDSGNESK KS(-4.51)S(4.51)PS(-9)T(-27.91)GS(-53.91)LDS(-90.43)GNES(-113.75)K 0 0 1 1 Q15057 Q15057 Q15057 ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.404357910156 3 554.240239 1659.69889 36536.6092344005 1.3344 0.00073957 413470 229.16 413470 229.16 783.402818003283 40.792 0.36383 40.792 40.629 40.993 0 28 12 3 0.594509773255368 0.00105878613703366 0.00620577410481606 4.3311E-07 1 9312 153.08 125.43 7 21345000 18457 19151 20957 21842 17292 20321 19476 21626 23985 38803 17474 18107 20918 22238 17800 20526 19844 22811 23475 37038 1 1 1 1 1 1 1 1 1 1 2543 1054 2234 2362 2840 2840 1820 KSSTPEEVK 9 Phospho (STY) _KSS(ph)TPEEVK_ KS(0.086)S(0.744)T(0.17)PEEVK KS(-9.35)S(6.42)T(-6.42)PEEVK 0 0 1 1 P23528 P23528 P23528 CFL1 Cofilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.333923339844 3 362.168917 1083.48492 40375.0077571054 2.5581 0.00092646 632750 229.16 632760 229.16 591.332606130372 38.549 0.42786 38.549 38.297 38.725 0 44 14 4 0.95696761463142 0.00270881873806676 0.0402433126266132 0.00031702 1 8713 113.95 71.228 3 54161000 13427 18445 14360 17843 22270 11982 19653 17206 18960 2624.5 12709 17421 14498 18263 22095 12342 20112 17136 18737 2869.5 1 1 1 1 1 1 1 1 1 1 2544 467 2235 2363 2841 2841 763;4427 KSSTSPK 7 Phospho (STY) _KSSTS(ph)PK_ KS(0.003)S(0.045)T(0.242)S(0.71)PK KS(-23.09)S(-11.98)T(-4.67)S(4.67)PK 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 501.294036865234 3 272.128393 813.363349 44640.1787191652 1.4205 0.00038657 842110 229.16 842120 229.16 501.29198114851 29.793 0.40936 29.793 29.636 30.045 0 40 13 4 0.888055251274893 0.00526514761514431 0.060130601016662 0.013837 1 6641 71.159 23.972 4 39844000 32123 35953 34124 38675 33957 32260 33281 37857 44346 5554.6 30404 33979 34242 39441 34470 32703 34213 37924 43287 6106.5 1 1 1 1 1 1 1 1 1 1 2545 2257 2236 2364 2842 2842 4177 KSSTTLR 7 Phospho (STY) _KSS(ph)TTLR_ KS(0.009)S(0.558)T(0.162)T(0.271)LR KS(-17.94)S(3.13)T(-5.38)T(-3.13)LR 0 0 1 1 Q9BZL6 Q9BZL6 Q9BZL6 PRKD2 Serine/threonine-protein kinase D2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 444.254699707031 3 291.479425 871.416447 46715.0445662086 0.89323 0.00026036 524140 152.78 524140 152.78 444.254548467153 32.182 0.55883 32.182 31.912 32.471 0 55 18 4 0.741729453674306 0.00932362621282282 0.245570139413342 0.001483 1 7186 105.2 70.474 4 55942000 67998 38981 67312 41198 48295 71058 51504 53571 41926 2130.7 64341 36836 67592 42645 50169 69677 52010 54477 41775 3246.1 1 1 1 1 1 1 1 1 1 1 2546 1879 2237 2365 2843 2843 3418 KSSVNGSSATSSG 13 Phospho (STY) _KS(ph)SVNGSSATSSG_ KS(0.676)S(0.319)VNGS(0.004)S(0.002)ATSSG KS(3.26)S(-3.26)VNGS(-22.74)S(-25.33)AT(-44.4)S(-63.09)S(-84.89)G 0 0 1 1 P35226 P35226 P35226 BMI1 Polycomb complex protein BMI-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.922607421875 2 624.758821 1247.50309 33634.6082599929 2.0762 0.0012971 366800 229.16 366800 229.16 853.921602485288 29.744 0.40524 29.744 29.548 29.954 0 42 13 4 0.990590282847488 0.00284561717017569 0.0485404107165658 2.5745E-10 1 6619 177.88 177.07 7 70099000 33928 8133.5 37104 7989.1 8991.5 35523 10001 17709 7961.5 2052 32117 7682.6 36837 8654.2 10797 34158 10075 18516 7942.1 2342 1 1 1 1 1 1 1 1 1 1 2547 541 2238 2366 2844 2844 875 KSSVTEE 7 Phospho (STY) _KSS(ph)VTEE_ KS(0.022)S(0.978)VT(0.001)EE KS(-16.55)S(16.55)VT(-32.56)EE 0 0 1 1 O94874 O94874 O94874 UFL1 E3 UFM1-protein ligase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.339172363281 2 430.175873 858.337194 37982.7703300046 1.3649 0.00058715 532720 229.16 532720 229.16 659.338551464944 34.267 0.6699 34.267 33.992 34.662 0 74 22 5 0.938189737918393 0.00280815301849547 0.0331845595735952 0.001749 1 7643 114.51 105.04 3 693550000 63318 35836 64300 32922 27298 59516 30672 42234 33670 5070.1 59919 33837 64243 34409 29938 58262 31142 43186 33095 5751.6 1 1 1 1 1 1 1 1 1 1 2548 223 2239 2367 2845 2845 384 KSTPSRGSSSK 11 2 Phospho (STY) _KST(ph)PS(ph)RGSSSK_ KS(0.413)T(0.59)PS(0.658)RGS(0.275)S(0.053)S(0.011)K KS(-1.64)T(1.64)PS(3.95)RGS(-3.95)S(-10.81)S(-17.39)K 0 0 2 2 Q08945 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.007507324219 3 427.846047 1280.51631 39444.4890285852 2.0298 0.00086843 535620 229.16 535620 229.16 657.0078529499 27.346 0.39984 27.346 27.152 27.552 0 25 13 3 0.973280021772393 0.00121025986776326 0.00858114648681323 0.039276 1 6083 59.709 42.63 15 11766000 8305.4 9986.8 9088 9696.1 9675.1 7937.4 11169 9820.1 10694 4485.9 7862 9432.6 9116.1 9945.1 9804.3 8066.6 11285 9912.5 10572 4451.3 1 1 1 1 1 1 1 1 1 1 2549 890 2240 2368 2846 2846 1452;4516 KSVSTSSPAGAAIASTSGASNNSSSN 26 Phospho (STY) _KSVSTSSPAGAAIASTSGASNNSSS(ph)N_ KSVSTSSPAGAAIASTSGASNNS(0.359)S(0.242)S(0.398)N KS(-135.98)VS(-132.14)T(-127.6)S(-122.83)S(-117.2)PAGAAIAS(-73.43)T(-65.94)S(-67.06)GAS(-44.48)NNS(-0.45)S(-2.16)S(0.45)N 0 0 1 1 Q86UE8 Q86UE8 Q86UE8 TLK2 Serine/threonine-protein kinase tousled-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 960.466003417969 3 807.357283 2419.05002 32188.8633362229 0.83013 0.00067021 189230 152.77 189230 152.78 960.466751626963 51.97 0.46265 51.97 51.776 52.238 0 31 15 3 0.904192001669355 0.00110221276913884 0.00844927026817909 8.397E-08 1 12104 160.11 152.91 12 24922000 4488.5 4821.3 3911 4620.2 5603 5212 5302.5 4480.9 5264.1 6950.2 4245.2 4553.4 3991.5 4765.7 5581.8 5201.8 5410.8 4732.4 5195.7 6648.2 1 1 1 1 1 1 1 1 1 1 2550 1370 2241 2369 2847 2847 2484 KSYESSEDCSEAAGSPAR 18 Phospho (STY) _KS(ph)YESSEDCSEAAGSPAR_ KS(0.999)YES(0.001)SEDCSEAAGSPAR KS(28.75)Y(-127.3)ES(-28.75)S(-45.54)EDCS(-91.97)EAAGS(-160.88)PAR 0 0 1 1 Q6P6C2 Q6P6C2 Q6P6C2 ALKBH5 RNA demethylase ALKBH5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.039916992188 3 670.929736 2009.76738 34407.4692200807 1.9662 0.0013192 227710 152.78 227710 152.78 824.373803154691 36.615 0.46372 36.615 36.372 36.836 7.1054E-15 35 15 3 0.974890417619733 0.00165579280333553 0.0087830532299973 9.1653E-23 1 8253 266.5 239.54 6 21708000 14053 13815 15775 14430 14807 15615 14062 14797 14735 6776.1 13304 13054 15772 14797 15073 15601 14368 15079 14511 6723 1 1 1 1 1 1 1 1 1 1 2551 1263 2242 2370 2848 2848 2240 KTAPTLSPEHWK 12 Phospho (STY) _KTAPTLS(ph)PEHWK_ KTAPT(0.02)LS(0.98)PEHWK KT(-39.66)APT(-16.83)LS(16.83)PEHWK 0 0 1 1 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 541.3095703125 4 369.432709 1473.70173 42051.6416299897 1.097 0.00040527 465230 171.87 465230 171.87 541.555610596244 64.647 0.72644 64.647 64.356 65.082 0 81 24 4 0.884585986918997 0.00269496321483521 0.0389375616387114 0.00040937 1 15161 100.58 75.642 3 27491000 7906.4 9637.2 7961.5 8783.3 8179.3 8605.7 7208.9 7882.2 9285.1 1749 7481.6 9099 8014.4 9067.6 8275.7 8628 7441.5 7987.2 9073.5 1829.4 1 1 1 1 1 1 1 1 1 1 2552 1699 2243 2371 2849 2849 3127 KTEELEEESFPER 13 Unmodified _KTEELEEESFPER_ 0 0 0 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.3671875 3 541.589658 1621.74715 35644.9913451142 2.006 0.0010864 282090 152.78 282090 152.78 694.365536558822 56.739 0.41656 56.739 56.541 56.958 7.1054E-15 34 13 3 0.886198526637693 0.0033883346879568 0.0522906854779959 0.014816 1 13253 74.772 47.802 1 25655000 17417 18535 19230 20016 26111 19360 26379 22803 18344 6871 16488 17518 19344 20451 26088 19491 26619 22946 18441 6997.6 1 1 1 1 1 1 1 1 1 1 2553 2257 2244 2372 2850 2850 KTESHHK 7 Phospho (STY) _KT(ph)ESHHK_ KT(0.5)ES(0.5)HHK KT(0)ES(0)HHK 0 0 1 1 Q99878;Q96KK5;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908 Q99878 Q99878 HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 409.231567382813 4 237.359013 945.406945 48837.8163084611 0.478 0.00011346 724100 171.87 724100 171.87 409.231794577065 23.29 0.75165 23.29 23.093 23.845 0 67 25 5 0.783755443134665 0.0086027879002111 0.0786288308669332 0.026011 1 5225 47.261 20.663 2 6518000 12487 9448.8 11864 10499 8079.5 11700 7442.2 10656 10469 4834.1 11814 8931.9 11935 10735 8416.4 11670 7689 10874 10201 4798.5 1 1 1 1 1 1 1 1 1 1 2554 296 2245 2373 2851 2851 487;4363 KTGSPEIK 8 Phospho (STY) _KTGS(ph)PEIK_ KT(0.1)GS(0.9)PEIK KT(-9.54)GS(9.54)PEIK 0 0 1 1 Q9BZ95 Q9BZ95 Q9BZ95 WHSC1L1 Histone-lysine N-methyltransferase NSD3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.985717773438 3 313.823081 938.447413 41941.5144949978 1.23 0.000386 730230 229.16 730230 229.16 542.985757356813 43.578 0.54943 43.578 43.354 43.903 0 47 18 3 0.700661588982991 0.00106118051216672 0.00291437696154562 0.042327 1 9959 45.28 8.4328 2 63552000 40763 28109 37246 25794 21350 36312 23977 30210 27447 3497 38559 26540 37517 26795 22645 35858 24375 30645 26935 3992 1 1 1 1 1 1 1 1 1 1 2555 1875 2246 2374 2852 2852 3413 KTKTLLK 7 2 Phospho (STY) _KT(ph)KT(ph)LLK_ KT(1)KT(1)LLK KT(63.28)KT(63.28)LLK 0 0 2 2 O00570;P41225 O00570 O00570 SOX1;SOX3 Transcription factor SOX-1;Transcription factor SOX-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.7236328125 3 331.171143 990.491599 39593.1702381962 2.2129 0.00073283 922640 305.55 922640 305.55 636.722941564013 62.574 0.58038 62.574 62.265 62.845 0 66 19 4 0.969044623865862 0.0137026659747556 0.222657511876966 0.013139 1 14688 63.283 21.304 1 76587000 47143 40798 45730 41479 39553 44108 40470 39997 42092 5439 44604 38544 46055 42590 40518 44053 41196 40443 41464 6047.2 1 1 1 1 1 1 1 1 1 1 2556 55 2247 2375 2853 2853 4316;4317 KTPEGDASPSTPEENETTTTSAFTIQEYFAK 31 Phospho (STY) _KTPEGDASPS(ph)TPEENETTTTSAFTIQEYFAK_ KT(0.011)PEGDAS(0.285)PS(0.352)T(0.352)PEENETTTTSAFTIQEYFAK KT(-15.23)PEGDAS(-0.92)PS(0)T(0)PEENET(-55.12)T(-66.39)T(-74.39)T(-82.68)S(-82.18)AFT(-89.25)IQEY(-117.36)FAK 0 0 1 1 Q96BK5 Q96BK5 Q96BK5 PINX1 PIN2/TERF1-interacting telomerase inhibitor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1037.2578125 4 865.135623 3456.51339 30077.6101277077 1.5365 0.0013293 198660 171.87 198670 171.87 1037.5103963145 93.728 0.40695 93.728 93.59 93.997 0 37 13 4 0.608130881610166 0.00116814812602908 0.0476687084709119 1.6099E-05 1 21819 131.38 117.94 11 9180300 3425.4 3394.8 2407.3 3110.9 2964.1 2504.7 4094.8 4276.3 3596.1 31760 3237.5 3205.3 2491.5 3201.8 2990.7 2619.6 4100.2 5177.8 3569.4 30005 1 1 1 1 1 1 1 1 1 1 2557 1656 2248 2376 2854 2854 3053;4724 KTPELGIVPPPPIPR 15 Phospho (STY) _KT(ph)PELGIVPPPPIPR_ KT(1)PELGIVPPPPIPR KT(113.54)PELGIVPPPPIPR 0 0 1 1 Q8TEH3 Q8TEH3 Q8TEH3 DENND1A DENN domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.425109863281 3 564.314574 1689.92189 37523.244635752 2.0273 0.001144 270730 152.78 270730 152.78 717.089758166516 83.821 0.6037 83.821 83.526 84.13 0 59 20 4 0.927061921579366 0.00271967529904743 0.0268070230347464 0.00038796 1 19585 113.54 99.189 1 13485000 6642 6502.1 6857.3 8012.5 10297 8191.3 11748 7795 6832.9 8878.2 6285.8 6150.9 6937.4 8137.6 10262 8214.3 11754 8101.8 6950.5 8540.3 1 1 1 1 1 1 1 1 1 1 2558 1551 2249 2377 2855 2855 4700 KTSAVSSPLLDQQR 14 Phospho (STY) _KTSAVSS(ph)PLLDQQR_ KTSAVS(0.035)S(0.965)PLLDQQR KT(-47.15)S(-44.82)AVS(-14.39)S(14.39)PLLDQQR 0 0 1 1 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.044250488281 3 537.269693 1608.78725 38922.9533477409 1.1343 0.00060945 284350 152.77 284360 152.78 690.044642190977 53.013 0.62601 53.013 52.697 53.323 0 50 22 3 0.923855973648559 0.000545145534072451 0.00249439909871355 1.3263E-10 2 12334 192.46 158.51 4 83976000 38141 36372 44097 35169 34050 41513 36046 39912 38362 10272 36113 34353 43941 36286 35178 41327 36660 40406 37753 10596 2 2 2 2 2 2 2 2 2 2 2559 1183 2250 2378 2856;2857 2856 2064 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 Phospho (STY) _KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR_ KT(0.017)S(0.012)FDQDS(0.971)DVDIFPSDFPTEPPSLPR KT(-17.47)S(-19.08)FDQDS(17.47)DVDIFPS(-104.33)DFPT(-141.74)EPPS(-156.91)LPR 0 0 1 1 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.92578125 4 755.091759 3016.33793 32917.8204819082 1.4926 0.001127 151740 114.58 151750 114.58 869.923782418276 99.182 1.3154 99.182 98.632 99.947 0 110 45 4 0.35447950117931 0.000807484446140352 0.0528480929184942 5.4586E-08 1 22925 164.14 138.93 6 37905000 2945 3122.6 2495.9 3089.6 2964.5 2697.7 2778.2 3133.5 4354.5 25753 2785 2949.6 2544.5 3168 2979.6 2775.5 2880.1 3902.2 4229.7 24322 1 1 1 1 1 1 1 1 1 1 2560 855 2251 2379 2858 2858 1379 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 Phospho (STY) _KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR_ KT(0.001)S(0.002)FDQDS(0.997)DVDIFPSDFPTEPPSLPR KT(-32.76)S(-26.09)FDQDS(26.09)DVDIFPS(-57.9)DFPT(-83.78)EPPS(-100.84)LPR 0 0 1 1 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1159.90148925781 3 1006.45325 3016.33793 28925.3428585609 1.4195 0.0014286 151800 152.77 151800 152.78 1159.89649655455 99.216 1.2619 99.216 98.546 99.807 0 134 43 4 0.955373031555765 0.00172177771635616 0.0301677220853407 1.9614E-07 1 23133 138.84 113.02 6 42834000 4539.6 4437.7 4236.3 5159.6 4781.3 5459.4 5887 9227.4 4941.7 96452 4294.5 4196.2 4291.9 5258.4 4834.7 5687.7 5913.4 12016 4916.1 91034 1 1 1 1 1 1 1 1 1 1 2561 855 2251 2379 2859 2859 1379 KTSPASLDFPESQK 14 Phospho (STY) _KT(ph)SPASLDFPESQK_ KT(0.499)S(0.499)PAS(0.002)LDFPESQK KT(0)S(0)PAS(-23.63)LDFPES(-45.51)QK 0 0 1 1 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.417053222656 3 538.918549 1613.73382 36101.734062602 2.1626 0.0011655 425230 229.16 425230 229.16 768.415951128804 65.344 0.69254 65.344 64.995 65.688 0 92 23 5 0.932630527600322 0.0017422024561197 0.0296703380881358 0.036943 1 15416 71.742 44.093 4 82950000 12618 9967.3 12967 9475.3 11882 14092 10541 12445 10240 12128 11941 9413 13021 9833.1 12102 13921 10786 12913 10117 11708 1 1 1 1 1 1 1 1 1 1 2562 1699 2252 2380 2860 2860 3128;3129;4728 KTSPQVK 7 Phospho (STY) _KTS(ph)PQVK_ KT(0.074)S(0.926)PQVK KT(-10.96)S(10.96)PQVK 0 0 1 1 Q6ZUT1 Q6ZUT1 Q6ZUT1 C11orf57 Uncharacterized protein C11orf57 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 518.979370117188 3 289.816038 866.426283 43420.787297357 0.79357 0.00022999 790720 229.16 790720 229.16 518.978885875498 37.625 0.46427 37.625 37.396 37.86 0 42 16 4 0.951730100358784 0.00865699704423428 0.0467991319318002 0.015059 1 8514 68.132 28.065 2 87652000 50348 44504 50041 46668 41463 49567 43463 51570 52500 399.22 47641 42054 50305 47832 42620 49580 44393 51663 51418 1569.4 1 1 1 1 1 1 1 1 1 1 2563 1305 2253 2381 2861 2861 2330 KTSPTNEK 8 Phospho (STY) _KTS(ph)PTNEK_ KT(0.019)S(0.627)PT(0.354)NEK KT(-15.21)S(2.48)PT(-2.48)NEK 0 0 1 1 Q96QE3 Q96QE3 Q96QE3 ATAD5 ATPase family AAA domain-containing protein 5 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 836.468688964844 2 492.723522 983.432491 NaN NaN NaN NaN NaN NaN NaN NaN 32.364 1 32.364 31.864 32.864 0 NaN NaN NaN 0.010754 1 7238 90.05 49.326 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2564 1732 2254 2382 2862 2862 3180 KVAGAATPK 9 Phospho (STY) _KVAGAAT(ph)PK_ KVAGAAT(1)PK KVAGAAT(77.19)PK 0 0 1 1 P16402 P16402 P16402 HIST1H1D Histone H1.3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.327087402344 3 308.163437 921.468482 42258.3123283054 2.1095 0.00065007 743640 229.16 743640 229.16 537.326397362245 38.198 0.459 38.198 37.98 38.439 7.1054E-15 56 15 5 0.923814278636706 0.0100060337493587 0.177566410460039 0.026175 1 8648 77.192 53.341 1 104260000 60408 67981 54336 69444 51988 55173 50514 59945 69738 2800.1 57139 64228 55031 70984 52894 56005 52017 60029 67995 4023.9 1 1 1 1 1 1 1 1 1 1 2565 408 2255 2383 2863 2863 4403 KVAKSPK 7 Phospho (STY) _KVAKS(ph)PK_ KVAKS(1)PK KVAKS(87.3)PK 0 0 1 2 P16403;P16401 P16403;P16401 P16401 HIST1H1C;HIST1H1B Histone H1.2;Histone H1.5 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.560241699219 2 419.233329 836.452104 NaN NaN NaN NaN NaN NaN NaN NaN 36.596 1 36.596 36.096 37.096 0 NaN NaN NaN 0.012486 1 8252 87.298 41.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2566 407;409 2256 2384 2864 2864 650 KVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLR 35 Unmodified _KVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLR_ 0 0 0 2 O15511 O15511 O15511 ARPC5 Actin-related protein 2/3 complex subunit 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1144.78540039063 4 972.663163 3886.62354 29384.4206704516 1.6314 0.0015868 176700 171.87 176700 171.87 1144.7843300833 71.858 0.35492 71.858 71.721 72.076 1.4211E-14 30 11 5 0.882339748267461 0.000928510848810524 0.00814495979786206 1.4241E-12 1 16865 190.22 177.17 1 11699000 3798.8 1603.9 3496.9 1820.1 4665.9 4944.7 3794.3 3394.8 2626 14467 3593.5 1516.4 3551.2 1905.9 4652.5 4824.6 3872.1 3901.2 2640.6 13701 1 1 1 1 1 1 1 1 1 1 2567 95 2257 2385 2865 2865 KVEEAEPEEFVVEK 14 Unmodified _KVEEAEPEEFVVEK_ 0 0 0 1 Q13185 Q13185 Q13185 CBX3 Chromobox protein homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.77880859375 3 554.613804 1660.81958 36603.2428423212 1.8767 0.0010408 413200 229.16 413200 229.17 784.112404252567 70.156 0.45695 70.156 69.904 70.361 0 49 15 4 0.883022129188865 0.00226203126163713 0.0317470809330754 1.6441E-10 1 16445 194.58 154.92 1 18256000 13463 14592 12605 15528 15901 13724 14831 15499 17504 15154 12736 13790 12780 15858 15929 13888 15221 15934 17158 14628 1 1 1 1 1 1 1 1 1 1 2568 934 2258 2386 2866 2866 KVEEEGSPGDPDHEASTQGR 20 Phospho (STY) _KVEEEGS(ph)PGDPDHEASTQGR_ KVEEEGS(1)PGDPDHEASTQGR KVEEEGS(63.43)PGDPDHEAS(-63.43)T(-78.03)QGR 0 0 1 1 Q9NZT2 Q9NZT2 Q9NZT2 OGFR Opioid growth factor receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.815063476563 4 551.982751 2203.9019 38690.6116313528 1.8061 0.00099693 207580 114.58 207580 114.58 666.814390260318 32.357 0.41164 32.357 32.117 32.528 0 31 13 4 0.949226359266268 0.0017459612078655 0.0128541447707425 2.2061E-05 1 7243 126.99 104.77 3 12067000 6953.7 6151.1 5331 5990.5 5382.6 7307 7068.5 8045.1 6630.4 4737.9 6573.9 5809.8 5465.2 6181.8 5482.6 7283.6 7102.2 8183.9 6560.8 4647.5 1 1 1 1 1 1 1 1 1 1 2569 2088 2259 2387 2867 2867 3778 KVEEEQEADEEDVSEEEAESK 21 Phospho (STY) _KVEEEQEADEEDVS(ph)EEEAESK_ KVEEEQEADEEDVS(1)EEEAESK KVEEEQEADEEDVS(154.36)EEEAES(-154.36)K 0 0 1 1 Q9H3N1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1069.501953125 3 840.000719 2516.98033 30334.814474231 1.7436 0.0014647 272810 229.16 272810 229.16 1069.49795145471 50.955 0.8421 50.955 50.675 51.517 0 125 28 6 0.989310206846703 0.00400057073528191 0.0411309138352845 4.7909E-42 1 11813 345.29 304.86 2 149410000 33947 17169 30782 17754 23257 29940 24203 28385 21091 10864 32111 16222 31088 18389 24056 29468 24506 28860 20942 10887 1 1 1 1 1 1 1 1 1 1 2570 1931 2260 2388 2868 2868 3502 KVEGNFNPFASPQK 14 Phospho (STY) _KVEGNFNPFAS(ph)PQK_ KVEGNFNPFAS(1)PQK KVEGNFNPFAS(105.91)PQK 0 0 1 1 Q9H6K1 Q9H6K1 Q9H6K1 C6orf106 Uncharacterized protein C6orf106 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.423645019531 3 548.259017 1641.75522 35988.1435920552 1.6998 0.00093196 417980 229.16 417990 229.16 777.756727789742 76.109 0.64209 76.109 75.774 76.417 -1.4211E-14 68 21 4 0.657891461463207 0.00222397744652827 0.0443174284232326 0.00019098 1 17829 105.91 82.577 1 23182000 10982 20794 12151 19721 8358.8 12181 10799 13725 20563 15650 10396 19638 12126 20193 8750.2 12595 11143 14179 19876 15054 1 1 1 1 1 1 1 1 1 1 2571 1946 2261 2389 2869 2869 3536 KVELSESEEDKGGK 14 2 Phospho (STY) _KVELS(ph)ES(ph)EEDKGGK_ KVELS(1)ES(1)EEDKGGK KVELS(56.82)ES(56.82)EEDKGGK 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.117248535156 3 565.568907 1693.68489 33201.7338665427 1.743 0.00098579 540260 305.55 540260 305.55 871.456057335104 55.633 3.4599 55.633 54.387 57.847 -7.1054E-15 192 118 2 0.509533681235952 0.000291594066231799 0.00215423312038327 0.029597 3 12743 56.819 40.513 1 57017000 48151 58885 52290 58992 61916 51598 66413 62347 64177 64786 45578 55628 52541 60446 62325 52306 67326 64074 63419 62447 3 3 3 3 3 3 3 3 3 3 2572 1436 2262 2390 2870;2871;2872 2870 2639;2640 KVELSESEEDKGGK 14 2 Phospho (STY) _KVELS(ph)ES(ph)EEDKGGK_ KVELS(1)ES(1)EEDKGGK KVELS(119.38)ES(119.38)EEDKGGK 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.843933105469 4 424.4285 1693.68489 38383.5154441023 1.8279 0.00077583 539930 229.16 539930 229.16 653.842214564718 54.778 4.6628 54.778 53.801 58.463 0 369 159 3 0.791967971683296 0.00368222988274052 0.0446277600995739 0.00012527 3 13153 119.38 89.128 1 33578000 31176 30395 31927 34124 40435 32393 36859 34282 35882 19925 29503 28735 32203 34782 40479 32608 37665 34915 35446 19555 3 3 3 3 3 3 3 3 3 3 2573 1436 2262 2390 2873;2874;2875 2873 2639;2640 KVELSESEEDKGGK 14 Phospho (STY) _KVELS(ph)ESEEDKGGK_ KVELS(0.999)ES(0.001)EEDKGGK KVELS(28.29)ES(-28.29)EEDKGGK 0 0 1 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.461853027344 3 538.913464 1613.71856 NaN NaN NaN NaN NaN NaN NaN NaN 51.7 1 51.7 51.2 52.2 0 NaN NaN NaN 0.013419 1 12030 92.492 68.451 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2574 1436 2262 2391 2876 2876 2639;2640 KVFSPVIR 8 Phospho (STY) _KVFS(ph)PVIR_ KVFS(1)PVIR KVFS(89.44)PVIR 0 0 1 1 Q96RK0 Q96RK0 Q96RK0 CIC Protein capicua homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 495.298797607422 3 342.522966 1024.54707 43961.047411094 0.70479 0.00024141 446030 152.78 446030 152.78 495.298499503872 69.709 0.49936 69.709 69.46 69.96 0 46 16 4 0.93962361578217 0.00317815848478797 0.141820660241468 0.0056326 1 16353 89.44 54.72 1 18341000 13411 10574 13497 10249 7869.4 13740 6332.2 9818.4 10102 1217.4 12690 9986.7 13514 10599 8300 13569 6622.7 10037 9807.9 1373.6 1 1 1 1 1 1 1 1 1 1 2575 1737 2263 2392 2877 2877 3187 KVIYSQPSAR 10 Phospho (STY) _KVIYSQPS(ph)AR_ KVIYS(0.001)QPS(0.999)AR KVIY(-57.21)S(-31.17)QPS(31.17)AR 0 0 1 1 Q9Y624 Q9Y624 Q9Y624 F11R Junctional adhesion molecule A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 562.984069824219 3 410.207706 1227.60129 42575.0442836749 1.4835 0.00060854 372430 152.78 372440 152.78 562.983152821313 46.406 0.40594 46.406 46.14 46.546 0 35 13 4 0.666291751388171 0.00243630480382611 0.0644591171413493 0.0071171 1 10700 82.069 64.337 3 17496000 11363 23283 12686 20273 14994 11017 12857 16460 21284 4846.2 10757 21978 12722 20851 15057 11533 13420 16445 20643 4944.2 1 1 1 1 1 1 1 1 1 1 2576 2308 2264 2393 2878 2878 4255 KVNVTVDYIRPASPATETVPAFSER 25 Phospho (STY) _KVNVTVDYIRPAS(ph)PATETVPAFSER_ KVNVTVDYIRPAS(0.998)PAT(0.002)ETVPAFSER KVNVT(-71.14)VDY(-127.88)IRPAS(27.03)PAT(-27.03)ET(-61.68)VPAFS(-131.01)ER 0 0 1 2 Q7KZF4 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.439208984375 4 707.606107 2826.39532 34951.7182280762 2.1849 0.0015461 161930 114.58 161930 114.58 822.438796451509 78.424 0.57418 78.424 78.119 78.693 0 65 19 4 0.918733806615004 0.0032196993284505 0.0625175821006187 1.1202E-17 2 18349 221.96 204.88 6 21936000 10537 13738 10977 15389 10357 11183 11208 13500 17101 18299 9972.8 12987 11022 15633 10564 11460 11529 14003 16624 17543 2 2 2 2 2 2 2 2 2 2 2577 1314 2265 2394 2879;2880 2880 2348 KVSCPLTR 8 Phospho (STY) _KVS(ph)CPLTR_ KVS(1)CPLTR KVS(37.64)CPLT(-37.64)R 0 0 1 1 O14526 O14526 O14526 FCHO1 F-BAR domain only protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 500.278991699219 3 347.503465 1039.48857 44056.141781784 0.48172 0.0001674 439640 152.78 439640 152.78 500.278733109529 43.591 0.46475 43.591 43.382 43.847 0 42 15 4 0.973273179134753 0.00171458954000816 0.00593123713879236 0.014203 1 9999 66.953 49.222 2 56680000 34380 18199 34835 20247 9786.2 37263 11719 20801 19444 2641.9 32534 17203 34748 20938 11445 36389 12047 21582 18858 2969.1 1 1 1 1 1 1 1 1 1 1 2578 58 2266 2395 2881 2881 94 KVSSAEGAAK 10 Phospho (STY) _KVSS(ph)AEGAAK_ KVS(0.356)S(0.644)AEGAAK KVS(-2.57)S(2.57)AEGAAK 0 0 1 1 P05114 P05114 P05114 HMGN1 Non-histone chromosomal protein HMG-14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.331298828125 3 343.165506 1026.47469 40939.6141593638 2.5877 0.00088801 667790 229.16 667790 229.16 572.329301058975 38.737 0.67052 38.737 38.411 39.082 0 48 22 4 0.863019150778907 0.00196244383931647 0.0240435092948103 0.00022644 1 8799 111.64 71.859 2 20276000 21322 16434 21440 17937 29910 25373 29420 23761 15260 2404.2 20177 15533 21685 18445 29832 25085 29583 23969 15658 2813.8 1 1 1 1 1 1 1 1 1 1 2579 299 2267 2396 2882 2882 491;492 KVSSAEGAAKEEPK 14 Phospho (STY) _KVS(ph)SAEGAAKEEPK_ KVS(0.953)S(0.047)AEGAAKEEPK KVS(13.02)S(-13.02)AEGAAKEEPK 0 0 1 2 P05114 P05114 P05114 HMGN1 Non-histone chromosomal protein HMG-14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.795104980469 3 504.243144 1509.7076 35981.2718039641 2.8873 0.0014559 605960 305.55 605960 305.55 809.793149783578 44.889 0.55604 44.889 44.624 45.18 0 45 18 3 0.690666898346572 0.00107331466216115 0.0131150064505647 0.0026372 1 10299 97.271 72.733 2 11829000 16895 11035 14699 9491.3 30438 17149 29608 18641 10007 7268.7 15978 10415 15119 9962.6 29929 16880 29642 18860 10705 7275.8 1 1 1 1 1 1 1 1 1 1 2580 299 2268 2397 2883 2883 491;492 KVTGTEGSSSTLVDYTSTSSTGGSPVR 27 Phospho (STY) _KVTGTEGSSSTLVDYTSTSSTGGS(ph)PVR_ KVTGTEGSSSTLVDYT(0.001)S(0.015)T(0.062)S(0.062)S(0.062)T(0.062)GGS(0.736)PVR KVT(-129.47)GT(-121.82)EGS(-106.81)S(-99.12)S(-84.96)T(-80.14)LVDY(-95.75)T(-31.2)S(-16.88)T(-10.74)S(-10.74)S(-10.74)T(-10.74)GGS(10.74)PVR 0 0 1 1 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1067.53479003906 3 914.421952 2740.24403 30918.1800385098 1.9765 0.0018074 167070 152.78 167080 152.78 1067.53250354364 58.574 0.38188 58.574 58.404 58.786 0 49 12 5 0.978812566894462 0.00296714444729688 0.045953043603953 2.4534E-18 1 13717 244.91 180.18 14 24344000 2585.8 3034.9 4041.6 3036.8 3612 3708.4 3864.7 4470 3301.8 25924 2452.3 2867 3981.2 3128.7 3693.9 3745.5 3906.4 5235.4 3281.8 24514 1 1 1 1 1 1 1 1 1 1 2581 1353 2269 2398 2884 2884 2454 KVTGTEGSSSTLVDYTSTSSTGGSPVRK 28 Phospho (STY) _KVTGTEGSSSTLVDYTSTSSTGGS(ph)PVRK_ KVTGTEGSSSTLVDYT(0.014)S(0.051)T(0.068)S(0.189)S(0.142)T(0.142)GGS(0.394)PVRK KVT(-69.12)GT(-69.12)EGS(-49.26)S(-43.57)S(-44.43)T(-43.57)LVDY(-47.78)T(-14.42)S(-8.86)T(-7.63)S(-3.19)S(-4.44)T(-4.44)GGS(3.19)PVRK 0 0 1 2 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.464538574219 4 718.092024 2868.33899 33117.7510137587 1.6167 0.0011609 239340 171.87 239340 171.87 890.214222470366 57.731 0.36872 57.731 57.506 57.875 0 37 12 4 0.649155809169029 0.000736282104118559 0.018486610271926 7.8727E-05 1 13526 114.61 87.141 14 14029000 8175 10500 9708.5 10473 11437 9682.7 10898 11888 13118 7526.9 7741.4 9918.4 9707.9 10742 11498 9782.5 11180 12066 12849 7362.6 1 1 1 1 1 1 1 1 1 1 2582 1353 2270 2399 2885 2885 2454 KVTSVSTLK 9 Phospho (STY) _KVTS(ph)VSTLK_ KVT(0.053)S(0.938)VS(0.008)T(0.001)LK KVT(-12.45)S(12.45)VS(-20.9)T(-30.42)LK 0 0 1 1 Q00613 Q00613 Q00613 HSF1 Heat shock factor protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.354064941406 3 348.189652 1041.54713 42322.2171734046 2.2129 0.00077051 658160 229.16 658160 229.16 577.352925252129 58.34 0.38026 58.34 58.141 58.521 0 30 12 3 0.598594391539046 0.00148904185574416 0.0427745091877271 0.031812 1 13678 51.463 36.773 4 14450000 19254 18026 21479 17632 17710 20788 20093 20736 19722 6849.3 18228 17027 21458 18178 18228 20708 20329 21008 19476 6929.3 1 1 1 1 1 1 1 1 1 1 2583 826 2271 2400 2886 2886 1325 KVVDYSQFQESDDADEDYGR 20 Unmodified _KVVDYSQFQESDDADEDYGR_ 0 0 0 1 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 942.450988769531 3 789.340019 2364.99823 31957.4736506993 1.4676 0.0011584 193550 152.77 193550 152.78 942.448717614219 62.225 0.48299 62.225 61.978 62.461 0 58 16 5 0.988592365870281 0.0042433899701681 0.0867248781124297 2.5821E-31 1 14620 299.51 267.33 1 31369000 16367 9227.8 18008 8989.7 13991 19179 15739 15417 9774.7 13121 15494 8715.9 17993 9408.6 14454 18747 15774 16006 9897.7 12712 1 1 1 1 1 1 1 1 1 1 2584 1913 2272 2401 2887 2887 KVVVSPTK 8 Phospho (STY) _KVVVS(ph)PTK_ KVVVS(0.849)PT(0.151)K KVVVS(7.5)PT(-7.5)K 0 0 1 1 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.3388671875 3 313.175454 936.504534 42226.6112230248 1.1053 0.00034616 731740 229.16 731740 229.16 542.338808184625 50.227 1.3883 50.227 49.895 51.283 0 151 47 6 0.979650723110058 0.0204614944895959 0.177209958187473 0.0085792 1 11627 81.709 53.54 2 2328900000 126880 61769 121230 65753 74118 103310 77793 86530 62415 115.7 120040 58374 121830 67873 78034 101660 78589 87449 62237 2111.6 1 1 1 1 1 1 1 1 1 1 2585 437 2273 2402 2888 2888 711 KVYEDSGIPLPAESPK 16 Phospho (STY) _KVYEDSGIPLPAES(ph)PK_ KVYEDSGIPLPAES(1)PK KVY(-103.47)EDS(-84.01)GIPLPAES(84.01)PK 0 0 1 1 Q8IXM2 Q8IXM2 Q8IXM2 BAP18 Chromatin complexes subunit BAP18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.459350585938 3 603.960525 1808.85975 34874.3159537092 2.4772 0.0014961 379430 229.16 379440 229.16 833.457776965395 73.803 0.80178 73.803 73.501 74.302 0 96 27 5 0.963119416447407 0.00750747224229601 0.12405493055644 3.9384E-07 1 17315 155.16 139.74 3 53410000 46041 8237.6 46380 9155.5 12349 50265 16014 28315 7840.6 18793 43568 7787 46273 10005 14586 48309 15901 29819 8082.9 18352 1 1 1 1 1 1 1 1 1 1 2586 1426 2274 2403 2889 2889 2598 KWDGSEEDEDNSK 13 Phospho (STY) _KWDGS(ph)EEDEDNSK_ KWDGS(0.999)EEDEDNS(0.001)K KWDGS(31.26)EEDEDNS(-31.26)K 0 0 1 1 O60841 O60841 O60841 EIF5B Eukaryotic translation initiation factor 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.367126464844 3 540.201673 1617.58319 35364.1475848081 2.6096 0.0014097 424220 229.16 424220 229.16 769.698304431477 49.656 1.2788 49.656 49.31 50.589 7.1054E-15 129 43 5 0.536292889811513 0.00152979733030478 0.00667091861838861 0.00018415 1 11485 103.9 80.175 2 52344000 50315 43330 52670 41046 33262 53443 35788 46571 40721 10186 47620 40920 52667 42483 34940 52948 36443 47288 39970 10670 1 1 1 1 1 1 1 1 1 1 2587 160 2275 2404 2890 2890 274 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 Phospho (STY) _KWPQGAVPQLPPSAPATSEMTTT(ph)PERPR_ KWPQGAVPQLPPSAPAT(0.001)S(0.002)EMT(0.23)T(0.096)T(0.67)PERPR KWPQGAVPQLPPS(-31.36)APAT(-29.79)S(-24.67)EMT(-4.64)T(-8.45)T(4.64)PERPR 0 0 1 2 P27708 P27708 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 893.217529296875 4 778.383681 3109.50562 33071.1790676069 1.9046 0.0014825 147200 114.58 147210 114.58 893.215182024119 73.989 2.6186 73.989 73.242 75.86 0 317 90 6 0.675069072084372 0.00357539982275285 0.0481891750453646 2.8561E-07 3 17500 138.88 120 6 41736000 16104 21110 16195 19840 22270 16363 22086 24179 23353 84420 15239 19935 16376 20393 22239 16814 22526 26494 22988 80051 3 3 3 3 3 3 3 3 3 3 2588 489 2276 2405 2891;2892;2893 2892 4434 KWSLNTYK 8 Phospho (STY) _KWS(ph)LNTYK_ KWS(1)LNTYK KWS(33.22)LNT(-33.22)Y(-47.96)K 0 0 1 1 P53367 P53367 P53367 ARFIP1 Arfaptin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.009216308594 3 373.845997 1118.51616 40695.0905688256 1.9806 0.00074045 612990 229.16 612990 229.16 603.00892391546 73.674 1.3256 73.674 73.356 74.682 0 84 24 5 0.898760765128527 0.00287211429551105 0.0290616290198127 0.0084989 1 17261 81.92 51.861 3 50200000 18913 12121 18343 12032 12109 18438 12751 13966 13624 6013.3 17894 11450 18428 12462 12666 18151 12972 14363 13406 5985.5 1 1 1 1 1 1 1 1 1 1 2589 701 2277 2406 2894 2894 1178 KYPSPQK 7 Phospho (STY) _KYPS(ph)PQK_ KYPS(1)PQK KY(-35.49)PS(35.49)PQK 0 0 1 1 Q9P2N5 Q9P2N5 Q9P2N5 RBM27 RNA-binding protein 27 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.980041503906 3 309.816038 926.426283 42968.7975556253 1.7459 0.0005409 739670 229.16 739680 229.16 538.979219316068 42.292 0.91062 42.292 41.798 42.708 7.1054E-15 125 31 5 0.918230771605996 0.00486528386583142 0.0612796722744775 0.012779 1 9611 73.781 47.052 2 139070000 24815 39400 28539 37388 30667 27366 32895 33665 39759 4685.9 23496 37209 28553 38351 31033 27965 33566 33666 38939 5191.5 1 1 1 1 1 1 1 1 1 1 2590 2112 2278 2407 2895 2895 3811 KYSSCSTIFLDDSTVSQPNLK 21 Phospho (STY) _KYSS(ph)CSTIFLDDSTVSQPNLK_ KYS(0.19)S(0.686)CS(0.115)T(0.009)IFLDDSTVSQPNLK KY(-136.73)S(-5.59)S(5.59)CS(-7.75)T(-18.93)IFLDDS(-100.65)T(-121.7)VS(-174.42)QPNLK 0 0 1 1 Q8ND76 Q8ND76 Q8ND76 CCNY Cyclin-Y MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1053.54553222656 3 824.0451 2469.11347 31135.7070721967 1.8368 0.0015136 278100 229.16 278100 229.17 1053.54379175242 82.708 0.57072 82.708 82.486 83.057 0 69 19 5 0.983885865121867 0.00437093519315532 0.0583625138137002 5.8965E-24 1 19344 283.81 265.25 8 21789000 4201.8 4520.6 3466.5 5290.9 7249.1 3978.9 8140.8 6727.2 4685.5 50851 3973.2 4274.9 3580.8 5364.5 7142.4 4177 8149.2 8173.6 4769.8 48038 1 1 1 1 1 1 1 1 1 1 2591 1503 2279 2408 2896 2896 2761 LAAAEETAVSPR 12 Phospho (STY) _LAAAEETAVS(ph)PR_ LAAAEETAVS(1)PR LAAAEET(-72.9)AVS(72.9)PR 0 0 1 0 Q9BUH6 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.389404296875 2 647.805575 1293.5966 35247.2308282626 1.1678 0.00075651 176880 114.58 176880 114.58 762.387075331191 54.364 0.77986 54.364 54.002 54.782 0 83 26 4 0.855997432733965 0.00329935450620577 0.115331733382813 8.484E-11 1 12637 189.61 154.43 2 152630000 49031 27734 50039 26596 34365 51647 35565 37157 25523 17247 46400 26193 50138 27780 35807 50501 35869 38353 25609 17100 1 1 1 1 1 1 1 1 1 1 2592 1833 2280 2409 2897 2897 3355 LAAQLGAPTSPIPDSAIVNTR 21 Phospho (STY) _LAAQLGAPTS(ph)PIPDSAIVNTR_ LAAQLGAPT(0.073)S(0.927)PIPDSAIVNTR LAAQLGAPT(-11.03)S(11.03)PIPDS(-59.69)AIVNT(-76.18)R 0 0 1 0 Q9H8Y5 Q9H8Y5 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.097045898438 3 724.706859 2171.09875 36697.4248468601 1.5231 0.0011038 105400 76.387 105410 76.388 801.094332721122 86.626 0.42928 86.626 86.419 86.848 1.4211E-14 42 14 4 0.662798086419887 0.00145422973921289 0.0367502186388316 6.8433E-05 1 20216 101.86 80.329 4 11986000 4361.2 4951.7 4853 4613.3 5954.4 4907.3 5491.1 5809.1 5397.7 41312 4128.7 4675.8 4871.1 4762.2 5970.9 4994.8 5609.2 7036.8 5329.8 39035 1 1 1 1 1 1 1 1 1 1 2593 1963 2281 2410 2898 2898 3573 LAASPEK 7 Phospho (STY) _LAAS(ph)PEK_ LAAS(1)PEK LAAS(90.76)PEK 0 0 1 0 Q96SF7;O95935 Q96SF7 Q96SF7 TBX15;TBX18 T-box transcription factor TBX15;T-box transcription factor TBX18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.349243164063 2 398.186044 794.357535 41298.3192718238 1.0407 0.00041439 575520 229.16 575520 229.16 627.349554477477 45.463 0.55145 45.463 45.18 45.731 0 31 18 2 0.948853401872524 0.000309219241691243 0.00138252040298069 0.0085496 1 10474 90.761 30.742 1 27005000 43239 9945.6 44554 10081 11822 48110 12345 20121 11223 4150.1 40920 9396 44388 10954 13936 46183 12510 21393 11122 4373.5 1 1 1 1 1 1 1 1 1 1 2594 270 2282 2411 2899 2899 451 LADSPPPQVWQLISK 15 Phospho (STY) _LADS(ph)PPPQVWQLISK_ LADS(1)PPPQVWQLISK LADS(141.96)PPPQVWQLIS(-141.96)K 0 0 1 0 P11441 P11441 P11441 UBL4A Ubiquitin-like protein 4A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.740112304688 3 586.965722 1757.87534 37562.1608226503 1.4498 0.00085096 260280 152.78 260280 152.78 739.740555615057 101.13 0.20198 101.13 101.07 101.27 0 12 6 2 0.947976642275946 0.000654351531725918 0.025990715795455 6.4575E-07 1 23752 146.13 92.35 2 14179000 4918.8 8055.3 4466.8 8363.9 6168.3 5133.9 5827.4 6256.9 6796.6 14445 4652.7 7611.3 4544 8517 6155.3 5331.4 5974.7 6667.9 6665.1 13747 1 1 1 1 1 1 1 1 1 1 2595 364 2283 2412 2900 2900 597 LAEAPSPAPTPSPTPVEDLGPQTSTSPGRLSPDFAEELR 39 Phospho (STY) _LAEAPSPAPTPSPTPVEDLGPQTSTSPGRLS(ph)PDFAEELR_ LAEAPSPAPTPSPTPVEDLGPQTS(0.001)T(0.019)S(0.303)PGRLS(0.677)PDFAEELR LAEAPS(-163.95)PAPT(-153.24)PS(-143.5)PT(-128.1)PVEDLGPQT(-38.79)S(-27.22)T(-15.45)S(-3.5)PGRLS(3.5)PDFAEELR 0 0 1 1 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.832275390625 5 819.797706 4093.95215 34167.8770228974 1.3052 0.00107 55907 45.833 55908 45.834 866.031774550621 91.127 0.28613 91.127 91.026 91.312 0 18 9 3 0.77322541992857 0.000581123009207063 0.00746737824365176 1.4569E-12 1 21237 181.39 167.23 9 11347000 2559.6 2821 2640.6 2616.9 2337.4 1940 2007.1 2943.4 3076.3 17441 2422.3 2663.7 2650 2688.6 2386.3 2020.2 2088.2 3439.1 2990 16491 1 1 1 1 1 1 1 1 1 1 2596 994 2284 2413 2901 2901 1688 LAEAPSPAPTPSPTPVEDLGPQTSTSPGRLSPDFAEELR 39 Phospho (STY) _LAEAPSPAPTPSPTPVEDLGPQTSTSPGRLS(ph)PDFAEELR_ LAEAPSPAPTPSPTPVEDLGPQT(0.002)S(0.058)T(0.058)S(0.321)PGRLS(0.561)PDFAEELR LAEAPS(-215.78)PAPT(-175.17)PS(-142.58)PT(-125.08)PVEDLGPQT(-24.63)S(-9.87)T(-9.87)S(-2.43)PGRLS(2.43)PDFAEELR 0 0 1 1 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1082.28735351563 4 1024.49531 4093.95215 30363.6082636139 1.1759 0.0012047 55920 57.29 55921 57.291 1082.28657405725 91.151 0.66058 91.151 90.877 91.538 0 78 22 6 0.955251651786251 0.00181984085762205 0.0139744762757308 8.0819E-26 1 21268 264.24 249.05 9 44054000 2845.9 3994.3 4128 2530.1 2448.7 4118.1 2084.1 4292.7 2560.9 19959 2697.8 3764.9 4061.7 2712.7 2579.4 4096.6 2152 4900.5 2506.6 18893 1 1 1 1 1 1 1 1 1 1 2597 994 2284 2413 2902 2902 1688 LAEDEGDSEPEAVGQSR 17 Phospho (STY) _LAEDEGDS(ph)EPEAVGQSR_ LAEDEGDS(1)EPEAVGQSR LAEDEGDS(89.59)EPEAVGQS(-89.59)R 0 0 1 0 Q9UIG0 Q9UIG0 Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.977600097656 3 623.589708 1867.7473 37755.2429046915 1.5456 0.00096379 122500 76.388 122500 76.389 700.312173255975 48.773 1.5365 48.773 48.505 50.041 -7.1054E-15 161 52 4 0.977799351067473 0.000598336121415682 0.00621130498770413 6.9266E-05 1 11275 112.58 81.162 2 41456000 12465 11811 12338 11844 11602 13178 11170 11752 11536 5430 11795 11157 12421 12181 11811 13142 11401 12007 11367 5385 1 1 1 1 1 1 1 1 1 1 2598 2158 2285 2414 2903 2903 3886 LAGSPPGSGQWKPK 14 Phospho (STY) _LAGS(ph)PPGSGQWKPK_ LAGS(0.762)PPGS(0.238)GQWKPK LAGS(5.06)PPGS(-5.06)GQWKPK 0 0 1 1 Q4KMQ1 Q4KMQ1 Q4KMQ1 TPRN Taperin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.742431640625 3 497.244819 1488.71263 37072.4140434408 2.521 0.0012536 460860 229.16 460870 229.16 726.406980644913 66.357 0.64368 66.357 66.049 66.693 0 56 21 4 0.90905720404391 0.00234110311553683 0.0304153464494616 0.0077631 1 15570 79.837 55.986 2 17438000 15016 13365 15679 15260 20102 16083 19206 16335 12789 8474.3 14211 12636 15803 15566 20119 16103 19418 16631 12891 8357.6 1 1 1 1 1 1 1 1 1 1 2599 1140 2286 2415 2904 2904 1984 LAIQGPEDSPSR 12 Phospho (STY) _LAIQGPEDS(ph)PSR_ LAIQGPEDS(0.995)PS(0.005)R LAIQGPEDS(22.73)PS(-22.73)R 0 0 1 0 Q15773 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.890686035156 2 675.308481 1348.60241 34495.219199522 1.4828 0.0010013 169670 114.58 169680 114.58 789.890607834896 58.929 1.215 58.929 58.549 59.764 7.1054E-15 105 39 4 0.868516747602533 0.0057439708065368 0.260196736723644 1.041E-10 1 13835 184.22 120 2 66598000 27249 53757 28130 51456 24455 27002 30548 37162 60982 53679 25788 50769 28241 52581 25149 28385 31636 38500 58880 51406 1 1 1 1 1 1 1 1 1 1 2600 1094 2287 2416 2905 2905 1897 LALSPLSLGK 10 Phospho (STY) _LALS(ph)PLSLGK_ LALS(1)PLSLGK LALS(36.4)PLS(-36.4)LGK 0 0 1 0 P49454 P49454 P49454 CENPF Centromere protein F MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.962585449219 2 539.799033 1077.58351 36575.8353332332 2.2855 0.0012337 424530 229.16 424540 229.16 768.961294454678 97.927 0.49519 97.927 97.731 98.226 0 42 16 3 0.801927065263107 0.00254670222221295 0.116691888153683 2.4241E-06 1 22746 153.54 124.18 2 14559000 14935 16107 14237 14240 9783.2 14666 8908.9 15307 14412 33099 14130 15206 14320 14742 10184 14752 9261.2 16326 13987 31521 1 1 1 1 1 1 1 1 1 1 2601 640 2288 2417 2906 2906 1057 LAPDYDALDVANK 13 Unmodified _LAPDYDALDVANK_ 0 0 0 0 P62750 P62750 P62750 RPL23A 60S ribosomal protein L23a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.014465332031 3 468.90503 1403.69326 39555.0786156523 1.0357 0.00048564 325810 152.78 325810 152.78 622.015132147199 80.016 0.52392 80.016 79.761 80.285 -1.4211E-14 37 13 3 0.924535230549787 0.00501859557558958 0.0524336499755854 6.1693E-05 1 18716 126.76 103.54 1 26407000 9710.3 10643 10539 9465.7 8780.4 12067 9008 11342 10605 6054.1 9191.5 10048 10543 9832.8 9018.9 11981 9202.2 11587 10396 5963.2 1 1 1 1 1 1 1 1 1 1 2602 767 2289 2418 2907 2907 LAPVPSPEPQKPAPVSPESVK 21 2 Phospho (STY) _LAPVPS(ph)PEPQKPAPVS(ph)PESVK_ LAPVPS(1)PEPQKPAPVS(0.997)PES(0.003)VK LAPVPS(135.57)PEPQKPAPVS(25.77)PES(-25.77)VK 0 0 2 1 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 751.156921386719 4 579.283747 2313.10588 36287.6454495229 1.7229 0.00099807 296700 171.87 296700 171.87 751.407011089339 75.661 1.3284 75.661 74.797 76.126 0 105 30 5 0.950451431005789 0.00524119157441686 0.194264893738142 6.8663E-09 1 17720 174.1 149.83 3 37071000 8193.3 6680.6 7964.1 7144.7 7474.4 9231.1 7062.8 7149.2 7709.9 9775.5 7752.1 6313.5 8025.8 7341.1 7608.7 9151.9 7226.9 7546.4 7579.9 9370.2 1 1 1 1 1 1 1 1 1 1 2603 1699 2290 2419 2908 2908 3130;3131 LAPWQASPPHPCR 13 Phospho (STY) _LAPWQAS(ph)PPHPCR_ LAPWQAS(1)PPHPCR LAPWQAS(120.63)PPHPCR 0 0 1 0 Q8IY92 Q8IY92 Q8IY92 SLX4 Structure-specific endonuclease subunit SLX4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.297302246094 3 532.909554 1595.70683 40053.25265066 1.511 0.00080521 143340 76.387 143340 76.388 609.297085150278 66.675 1.0768 66.675 65.957 67.034 0 115 36 4 0.992472519542572 0.00281830646039004 0.109950124274046 8.2869E-05 1 15601 120.63 100.25 1 22797000 5828.6 5832.1 5509.2 5121.4 5518.1 5972.4 5978.2 5830.2 5565.8 3933.5 5514.2 5505.3 5566.8 5315.5 5605.4 5954.1 6052 5972.2 5509.3 3838.8 1 1 1 1 1 1 1 1 1 1 2604 1435 2291 2420 2909 2909 2619 LASDDRPSPPR 11 Phospho (STY) _LASDDRPS(ph)PPR_ LASDDRPS(1)PPR LAS(-67.55)DDRPS(67.55)PPR 0 0 1 1 P98175 P98175 P98175 RBM10 RNA-binding protein 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 507.254425048828 3 430.86612 1289.57653 43877.4054998393 1.0566 0.00045523 177290 76.388 177290 76.388 507.253833090335 39.233 1.8494 39.233 37.922 39.772 0 230 63 5 0.955915003127813 0.0234095121098753 0.310021492002735 3.4051E-07 2 8882 160.79 119.7 2 128160000 61338 58450 60490 61580 66110 66977 70139 61245 58354 7662.5 58038 55233 61035 63125 66803 66836 70879 61886 58078 8632.6 2 2 2 2 2 2 2 2 2 2 2605 819 2292 2421 2910;2911 2911 1314 LASELAKTPQK 11 Phospho (STY) _LASELAKT(ph)PQK_ LAS(0.012)ELAKT(0.988)PQK LAS(-19.22)ELAKT(19.22)PQK 0 0 1 1 Q13416 Q13416 Q13416 ORC2 Origin recognition complex subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.718200683594 3 422.554882 1264.64282 39103.0094763442 2.5779 0.0010893 542330 229.16 542330 229.16 651.717358432139 63.402 0.52451 63.402 63.138 63.662 7.1054E-15 48 17 4 0.752765700001688 0.00247590154323901 0.0172788905894478 0.036233 1 14881 62.408 44.491 2 14853000 19833 14667 17763 14996 9695.6 16430 10368 15066 16338 4215.8 18759 13858 17908 15400 10331 16396 10685 15292 15867 4318.3 1 1 1 1 1 1 1 1 1 1 2606 949 2293 2422 2912 2912 4532 LASPELER 8 Phospho (STY) _LAS(ph)PELER_ LAS(1)PELER LAS(82.42)PELER 0 0 1 0 P05412;P17535 P05412 P05412 JUN;JUND Transcription factor AP-1;Transcription factor jun-D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 612.314086914063 2 497.73389 993.453226 40293.5096653226 1.1336 0.00056422 230210 114.58 230210 114.58 612.314921026262 55.15 0.81524 55.15 54.868 55.683 0 70 27 4 0.741201280953458 0.00220360980456395 0.0139007820406052 0.011993 1 12843 82.417 54.212 1 61572000 20984 42562 22424 41590 19663 23105 19301 27672 48047 5840.1 19862 40202 22463 42466 20140 24053 20452 27756 46189 6139.6 1 1 1 1 1 1 1 1 1 1 2607 304 2294 2423 2913 2913 500 LASPMKPVPGTPPSSK 16 Phospho (STY) _LAS(ph)PMKPVPGTPPSSK_ LAS(0.998)PMKPVPGT(0.002)PPSSK LAS(27.27)PMKPVPGT(-27.27)PPS(-48.09)S(-47.39)K 0 0 1 1 Q15648 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.114074707031 3 558.615925 1672.82594 35834.2381380639 2.0644 0.0011532 410230 229.16 410240 229.16 787.779560386509 65.54 0.46327 65.54 65.284 65.748 0 49 15 5 0.763505757477882 0.00242578862687314 0.0503444058208463 0.00012606 1 15371 102.6 85.522 4 12021000 15192 15963 16524 16751 10733 14614 9154.2 14620 17473 9893.9 14381 15084 16488 17117 11220 14762 9621.9 14963 16888 9654.6 1 1 1 1 1 1 1 1 1 1 2608 1084 2295 2424 2914 2914 1880;4574 LASPMKPVPGTPPSSK 16 Phospho (STY) _LASPMKPVPGT(ph)PPSSK_ LAS(0.004)PMKPVPGT(0.88)PPS(0.097)S(0.019)K LAS(-23.8)PMKPVPGT(9.58)PPS(-9.58)S(-16.69)K 0 0 1 1 Q15648 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.7822265625 3 558.615925 1672.82594 36272.7881772542 2.285 0.0012765 410230 229.16 410240 229.16 788.113006421602 66.413 0.7383 66.413 65.926 66.664 0 77 24 4 0.835617699189409 0.00200615209163488 0.0755782100099646 0.0003209 1 15560 103.31 75.975 4 20976000 14338 12124 17319 12328 16564 13998 16012 17071 12017 11132 13578 11454 17258 12672 16843 14016 16216 17340 12027 10877 1 1 1 1 1 1 1 1 1 1 2609 1084 2295 2424 2915 2915 1880;4574 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 Phospho (STY) _LASPSGSTSSGLEVVAPEGTS(ph)APGGGPGTLDDSATICR_ LASPSGST(0.001)S(0.001)S(0.001)GLEVVAPEGT(0.115)S(0.767)APGGGPGT(0.115)LDDSATICR LAS(-53)PS(-47.13)GS(-35.92)T(-29.76)S(-29.76)S(-29.76)GLEVVAPEGT(-8.23)S(8.23)APGGGPGT(-8.23)LDDS(-52.37)AT(-63.18)ICR 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 968.211975097656 4 910.418646 3637.64548 31456.6390852997 1.3311 0.0012118 62928 57.291 62929 57.292 967.959534187354 81.216 0.72374 81.216 80.898 81.622 -1.4211E-14 107 24 6 0.973178671670399 0.00409527918284435 0.0681576400749511 1.3204E-12 2 19010 177.1 165.97 11 29595000 3755.2 4138.1 3668 3640.3 3963.1 3166.9 5603.1 6041.5 3342.4 29448 3553 3906.3 3705.2 3760.5 4025.4 3287 5562.8 6836 3393.8 27868 2 2 2 2 2 2 2 2 2 2 2610 942 2296 2425 2916;2917 2917 1560;1561;1562;4529 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 Phospho (STY) _LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR_ LAS(0.853)PS(0.145)GS(0.002)TSSGLEVVAPEGTSAPGGGPGTLDDSATICR LAS(7.7)PS(-7.7)GS(-26.47)T(-42.42)S(-49.8)S(-57.1)GLEVVAPEGT(-145.97)S(-151.72)APGGGPGT(-190.03)LDDS(-203.89)AT(-209.52)ICR 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 968.212280273438 4 910.418646 3637.64548 31075.8982256472 1.7539 0.0015968 62929 57.292 62931 57.293 968.211485551675 82.356 1.7617 82.356 81.853 83.615 0 310 60 9 0.995744501722965 0.0254358856392077 0.800342206766363 1.8259E-18 1 19215 224.26 208.86 11 1229100000 1646.2 2350 2590.6 2617 3475.1 1264 4056.7 3076.1 2761.6 17360 1561.3 2221.5 2566.2 2649 3481.4 1382.8 4065.9 3538.5 2779.8 16418 1 1 1 1 1 1 1 1 1 1 2611 942 2296 2425 2918 2918 1560;1561;1562;4529 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 Phospho (STY) _LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR_ LAS(0.747)PS(0.253)GSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR LAS(4.71)PS(-4.71)GS(-38.68)T(-57.48)S(-62.7)S(-62.02)GLEVVAPEGT(-133.98)S(-133.59)APGGGPGT(-145.64)LDDS(-168.35)AT(-172)ICR 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.771789550781 5 728.536372 3637.64548 35677.7663244971 1.8479 0.0013463 62910 45.832 62912 45.833 774.769842702071 82.341 0.53986 82.341 82.059 82.599 0 67 18 5 0.973508117947731 0.00386460220997993 0.0347562922732257 1.1342E-10 1 19273 175.85 152.79 11 35146000 2751.5 2788.1 3604.4 2989.4 3901.3 3290.6 3672.9 4284.8 2803.4 13665 2606.8 2635 3583.6 3062 3937.5 3323.1 3725.8 4671.2 2802.9 12966 1 1 1 1 1 1 1 1 1 1 2612 942 2296 2425 2919 2919 1560;1561;1562;4529 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 Phospho (STY) _LASPS(ph)GSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR_ LAS(0.193)PS(0.743)GS(0.062)T(0.002)SSGLEVVAPEGTSAPGGGPGTLDDSATICR LAS(-5.85)PS(5.85)GS(-10.82)T(-26.89)S(-36.32)S(-41.54)GLEVVAPEGT(-76.3)S(-79.84)APGGGPGT(-87.43)LDDS(-109.73)AT(-113.28)ICR 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1290.9423828125 3 1213.55577 3637.64548 27385.0756448086 1.7448 0.0021174 62946 76.388 62947 76.39 1290.27842864696 82.318 1.5285 82.318 81.941 83.47 0 254 52 8 0.790139432630196 0.00164868452552193 0.00800834385064796 1.0575E-05 2 19407 116.99 110.76 11 827470000 2652.5 2267.3 1839.4 2352.7 3587.2 2725.2 3579.6 3475.9 3179.7 58051 2506.9 2142.4 1920.3 2416.5 3536.6 2833.7 3633.2 5206.7 3154.3 54742 2 2 2 2 2 2 2 2 2 2 2613 942 2296 2425 2920;2921 2920 1560;1561;1562;4529 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 Phospho (STY) _LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR_ LAS(0.407)PS(0.119)GS(0.119)T(0.119)S(0.119)S(0.119)GLEVVAPEGTSAPGGGPGTLDDSATICR LAS(5.36)PS(-5.36)GS(-5.36)T(-5.36)S(-5.36)S(-5.36)GLEVVAPEGT(-44.34)S(-44.34)APGGGPGT(-50.47)LDDS(-56.01)AT(-57.89)ICR 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1290.28503417969 3 1213.55577 3637.64548 NaN NaN NaN NaN NaN NaN NaN NaN 84.866 1 84.866 84.366 85.366 0 NaN NaN NaN 0.019928 1 19828 60.802 48.804 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2614 942 2296 2425 2922 2922 1560;1561;1562;4529 LASQADSTEQVDDTILT 17 Unmodified _LASQADSTEQVDDTILT_ 0 0 0 0 Q92616 Q92616 Q92616 GCN1L1 Translational activator GCN1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1018.51739501953 2 903.93381 1805.85307 30835.4953918352 1.5897 0.001437 126760 114.58 126760 114.58 1019.01720880234 77.705 0.37961 77.705 77.515 77.895 0 28 12 3 0.978996612230387 0.00123710598825898 0.0347897987891103 4.3895E-15 1 18214 216.06 184.98 1 11066000 3436.8 3665.2 3310.7 2288.2 3249.9 3151.9 3727 3886.7 2835 17830 3251.6 3454.6 3341.1 2447.4 3307.5 3163.5 3746.4 4407.4 2835.1 16879 1 1 1 1 1 1 1 1 1 1 2615 1610 2297 2426 2923 2923 LASSPKDK 8 Phospho (STY) _LASS(ph)PKDK_ LAS(0.341)S(0.659)PKDK LAS(-2.85)S(2.85)PKDK 0 0 1 1 Q9P2E9 Q9P2E9 Q9P2E9 RRBP1 Ribosome-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.314697265625 3 309.151197 924.431763 43176.7678922656 1.5169 0.00046896 741270 229.16 741270 229.16 538.314102409656 44.247 0.72427 44.247 43.785 44.51 0 82 24 4 0.971850153559215 0.00346119536409946 0.0684783521818659 0.014713 1 10101 62.694 28.316 2 96372000 26288 17969 27140 19771 30447 23643 32195 25589 20370 1975.5 24878 16985 27323 20252 30716 23554 32364 25652 20601 2452.4 1 1 1 1 1 1 1 1 1 1 2616 2109 2298 2427 2924 2924 3808 LASSVLR 7 Phospho (STY) _LAS(ph)SVLR_ LAS(0.5)S(0.5)VLR LAS(0)S(0)VLR 0 0 1 0 P84098 P84098 P84098 RPL19 60S ribosomal protein L19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 527.798156738281 2 413.215136 824.415719 46065.3346115458 0.63907 0.00026407 277290 114.58 277290 114.58 527.797299899756 62.384 0.34645 62.384 62.209 62.555 7.1054E-15 28 11 4 0.170525762552479 0.000202768867646168 0.00825029501642661 0.019842 1 14678 71.379 6.1273 2 8909900 12560 12323 13731 11004 12735 12703 8827.4 10890 12711 1787.4 11890 11634 13739 11407 12931 12637 9279.5 11048 12377 1935.1 1 1 1 1 1 1 1 1 1 1 2617 812 2299 2428 2925 2925 1295;1296 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK 33 Phospho (STY) _LASVPAGGAVAVSAAPGS(ph)AAPAAGSAPAAAEEK_ LASVPAGGAVAVS(0.002)AAPGS(0.984)AAPAAGS(0.014)APAAAEEK LAS(-56.59)VPAGGAVAVS(-26.96)AAPGS(18.61)AAPAAGS(-18.61)APAAAEEK 0 0 1 0 P05387 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.188842773438 4 714.355018 2853.39097 34539.352259107 2.3912 0.0017082 160400 114.58 160400 114.58 829.187333515915 74.143 0.43342 74.143 73.925 74.358 1.4211E-14 66 14 6 0.611206561711875 0.00820465368544776 0.225238163080651 0.0061765 1 17413 75.343 66.375 4 43364000 8319.1 10683 9808 14449 7633 10563 8556 10923 12378 23435 7877.6 10113 9765.6 14544 7891 10810 8769.6 11649 12051 22320 1 1 1 1 1 1 1 1 1 1 2618 302 2300 2429 2926 2926 497 LATKSSPVK 9 Phospho (STY) _LATKSS(ph)PVK_ LATKS(0.394)S(0.606)PVK LAT(-34.3)KS(-1.87)S(1.87)PVK 0 0 1 1 P49916 P49916 P49916 LIG3 DNA ligase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.513305664063 2 505.767732 1009.52091 33761.697361277 2.9427 0.0014883 679650 343.74 679650 343.75 849.511109164783 49.358 0.37371 49.358 49.169 49.542 -7.1054E-15 23 12 3 0.989963157308217 0.000878514502136132 0.0181751508449307 0.00052544 1 11458 107.12 53.548 3 10826000 23566 19951 23666 19683 29558 25460 28850 24762 21089 23381 22300 18846 23895 20319 29630 25297 29188 25570 21138 22589 1 1 1 1 1 1 1 1 1 1 2619 660 2301 2430 2927 2927 1115 LATNTSAPDLK 11 Phospho (STY) _LATNTS(ph)APDLK_ LATNT(0.139)S(0.861)APDLK LAT(-35.5)NT(-7.92)S(7.92)APDLK 0 0 1 0 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 834.953735351563 2 605.789393 1209.56423 34281.0119427364 1.742 0.0010553 378290 229.16 378290 229.16 834.952676863563 64.477 1.1932 64.477 64.062 65.256 0 132 40 5 0.83181531760586 0.00632171987507488 0.0712024071472758 2.6508E-10 1 15105 198.16 155.36 3 226280000 53036 93585 49640 87909 57350 49126 57848 67045 97450 18028 50173 88374 50275 89986 57788 51231 59945 67099 94475 18527 1 1 1 1 1 1 1 1 1 1 2620 491 2302 2431 2928 2928 809 LAWVGDVFTATPAEPRPLTSPLR 23 Phospho (STY) _LAWVGDVFTATPAEPRPLTS(ph)PLR_ LAWVGDVFTATPAEPRPLT(0.005)S(0.995)PLR LAWVGDVFT(-132.51)AT(-98.17)PAEPRPLT(-23.05)S(23.05)PLR 0 0 1 1 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 935.498657226563 3 858.775385 2573.30432 32439.0159223923 1.8036 0.0015489 88949 76.387 88951 76.389 935.496790705477 100.66 0.2788 100.66 100.51 100.78 0 30 9 6 0.979865499095898 0.0279004676837464 0.329586226105071 2.1453E-42 1 23560 325.36 295.63 4 350070000 75489 78087 78311 82010 47575 74886 46714 68200 90846 113490 71443 73788 78315 83851 50124 75510 48800 72088 87766 108450 1 1 1 1 1 1 1 1 1 1 2621 624 2303 2432 2929 2929 1030 LCAGIMITASHNPK 14 Oxidation (M),Phospho (STY) _LCAGIM(ox)ITAS(ph)HNPK_ LCAGIM(1)ITASHNPK LCAGIMIT(0.001)AS(0.999)HNPK LCAGIM(119.96)ITASHNPK LCAGIMIT(-29.4)AS(29.4)HNPK 0 1 1 0 Q96G03 Q96G03 Q96G03 PGM2 Phosphoglucomutase-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.024597167969 3 536.913976 1607.7201 37070.2542541591 1.2268 0.00065868 284540 152.78 284540 152.78 689.689223789384 65.858 1.2653 65.858 65.399 66.664 0 132 42 6 0.993766861370145 0.00713223746395732 0.078864677954733 9.8788E-05 1 15442 119.96 95.168 2 70662000 14580 9140.6 16313 10850 13330 15364 15344 12181 10822 8721.2 13803 8644.5 16294 11109 13728 15175 15399 12605 10870 8494 1 1 1 1 1 1 1 1 1 1 2622 1680 2304 2433 2930 2930 197 3094 LCAGIMITASHNPK 14 Phospho (STY) _LCAGIMITAS(ph)HNPK_ LCAGIMITAS(1)HNPK LCAGIMIT(-44.77)AS(44.77)HNPK 0 0 1 0 Q96G03 Q96G03 Q96G03 PGM2 Phosphoglucomutase-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.693908691406 3 531.582338 1591.72518 37207.3895541073 1.7738 0.0009429 287400 152.77 287400 152.78 684.357635174632 73.167 2.5978 73.167 72.634 75.232 0 288 89 5 0.965445461308089 0.00360557374528536 0.0538333267763076 4.7141E-07 3 17133 156.11 130.25 2 223990000 32302 21492 36834 22933 34130 33789 36376 31575 21302 25816 30583 20311 36800 23634 34813 33405 36507 32535 21658 25040 3 3 3 3 3 3 3 3 3 3 2623 1680 2304 2434 2931;2932;2933 2931 3094 LCDFGSASHVADNDITPYLVSR 22 Phospho (STY) _LCDFGSASHVADNDITPY(ph)LVSR_ LCDFGSASHVADNDIT(0.001)PY(0.999)LVSR LCDFGS(-179.83)AS(-166.73)HVADNDIT(-29.73)PY(29.73)LVS(-37)R 0 0 1 0 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 916.431884765625 3 839.708711 2516.1043 32205.6276969777 1.5624 0.0013119 90968 76.387 90970 76.388 916.430304875764 84.459 0.82393 84.459 84.187 85.01 0 110 28 5 0.982944822163141 0.00459807054542389 0.0392364099947092 4.4666E-24 1 19717 278.79 256.36 5 36731000 4879.8 6695.5 5153.9 6592.6 5444.9 6674.8 9846.5 10345 8342.6 25369 4618.6 6324.4 5185.8 6776.7 5569.1 6780.6 9770.4 10999 8295.4 24127 1 1 1 1 1 1 1 1 1 1 2624 963 2305 2435 2934 2934 4879 LCSSSSSDTSSR 12 Phospho (STY) _LCS(ph)SSSSDTSSR_ LCS(0.46)S(0.46)S(0.079)S(0.001)SDTSSR LCS(0)S(0)S(-7.64)S(-26.68)S(-45.23)DT(-73.9)S(-95.73)S(-114.88)R 0 0 1 0 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.834899902344 2 677.253046 1352.49154 36026.8072856274 1.8729 0.0012684 169190 114.58 169190 114.58 791.834309598801 31.791 0.35098 31.791 31.589 31.94 3.5527E-15 25 11 3 0.981695726441321 0.00142905931095268 0.0209800778248949 6.1701E-17 1 7094 247.95 207.18 8 16371000 13798 13053 13688 13766 10037 14114 10762 11534 14824 1561.4 13056 12335 13746 14096 10415 14102 11031 11717 14455 1737.2 1 1 1 1 1 1 1 1 1 1 2625 1387 2306 2436 2935 2935 2516;2517 LCYVALDFEQEMATAASSSSLEK 23 Oxidation (M) _LCYVALDFEQEM(ox)ATAASSSSLEK_ LCYVALDFEQEM(1)ATAASSSSLEK LCYVALDFEQEM(101.48)ATAASSSSLEK 0 1 0 0 P60709;Q6S8J3;P63261 P60709;P63261 P63261 ACTB;POTEE;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.379577636719 4 642.297644 2565.16147 37242.423450357 1.675 0.0010758 178390 114.58 178390 114.58 757.377659521988 99.737 0.19893 99.737 99.609 99.807 0 10 6 3 0.955129472744977 0.00208349858085595 0.0234128493592015 0.0001004 1 23211 101.48 69.386 1 22963000 5997.6 6343.8 7258.3 6688.8 6993.7 7063.4 9895.9 8701.1 6709.9 15991 5679.9 5994.7 7238.4 6852.8 7150.9 7113.9 9846.6 9146.2 6755.8 15259 1 1 1 1 1 1 1 1 1 1 2626 742;783 2307 2437 2936 2936 98 LCYVALDFEQEMATAASSSSLEK 23 Oxidation (M),Phospho (STY) _LCYVALDFEQEM(ox)ATAASSSS(ph)LEK_ LCYVALDFEQEM(1)ATAASSSSLEK LCYVALDFEQEMAT(0.004)AAS(0.091)S(0.185)S(0.305)S(0.414)LEK LCYVALDFEQEM(63.71)ATAASSSSLEK LCY(-60.94)VALDFEQEMAT(-19.83)AAS(-6.56)S(-3.48)S(-1.32)S(1.32)LEK 0 1 1 0 P60709;Q6S8J3;P63261 P60709;P63261 P63261 ACTB;POTEE;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1035.49108886719 3 882.716543 2645.1278 29742.5032473201 1.8889 0.0016674 173070 152.77 173070 152.78 1035.82600541145 100.3 0.19329 100.3 100.23 100.42 -1.4211E-14 18 6 4 0.701216367724446 0.00132260925903452 0.027904697721353 0.015515 1 23449 63.713 48.459 6 46802000 6566.6 6535.5 7133.2 10236 7822.9 6299 7701.9 7747.7 7664.3 92082 6215.9 6195 7158.4 10221 7896.3 6681.1 7844.7 10490 7564 86885 1 1 1 1 1 1 1 1 1 1 2627 742;783 2307 2438 2937 2937 98 1229 LCYVALDFEQEMATAASSSSLEK 23 Unmodified _LCYVALDFEQEMATAASSSSLEK_ 0 0 0 0 P60709;Q6S8J3;P63261 P60709;P63261 P63261 ACTB;POTEE;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1003.84130859375 3 850.729462 2549.16656 31350.5167138898 1.3775 0.0011719 179580 152.78 179580 152.78 1003.83921617358 101.89 0.11095 101.89 101.82 101.93 0 18 3 7 0.983585377105313 0.0281892973641411 0.704724810039151 4.5713E-25 1 23990 283.73 262.84 1 179390000 43368 29008 47169 21799 48812 57521 71840 55892 33846 64856 41051 27362 47341 23397 49727 56164 70981 58081 35007 62363 1 1 1 1 1 1 1 1 1 1 2628 742;783 2307 2439 2938 2938 LDEDSELLR 9 Phospho (STY) _LDEDS(ph)ELLR_ LDEDS(1)ELLR LDEDS(57.55)ELLR 0 0 1 0 REV__Q70CQ2 REV__Q70CQ2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.837585449219 2 585.257926 1168.5013 37325.8760600017 1.2569 0.0007356 195770 114.58 195780 114.58 699.836288688363 62.335 0.58101 62.335 62.093 62.674 0 56 19 4 0.621005580344475 0.00188273270651822 0.102345185252427 0.032992 1 14624 57.55 31.445 1 27959000 21524 14046 20313 15859 23194 21849 25166 19437 15187 16492 20362 13279 20563 16269 23386 21634 25249 20087 15409 15979 1 1 1 1 1 1 1 1 1 1 + 2629 2336 2308 2440 2939 2939 4294 LDETDDPDDYGDR 13 Unmodified _LDETDDPDDYGDR_ 0 0 0 0 P07384 P07384 P07384 CAPN1 Calpain-1 catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.881286621094 2 763.299889 1524.58523 33439.7600305305 1.0189 0.00077775 150110 114.58 150110 114.58 877.8810468019 48.522 0.37456 48.522 48.276 48.651 -7.1054E-15 28 12 3 0.740205553962431 0.000760744303246279 0.0186114382803089 3.5552E-22 1 11230 265 217.74 1 16349000 19647 28553 21051 27811 24134 19382 23522 24283 28621 16678 18597 26969 21153 28466 24306 19897 24113 24670 28024 16266 1 1 1 1 1 1 1 1 1 1 2630 319 2309 2441 2940 2940 LDIDSPPITAR 11 Unmodified _LDIDSPPITAR_ 0 0 0 0 P14618 P14618 P14618 PKM Pyruvate kinase PKM MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.908325195313 2 599.327328 1196.6401 39286.883981173 1.5187 0.00091021 191180 114.58 191180 114.58 713.907802987355 70.557 0.46362 70.557 70.361 70.825 0 30 15 3 0.96849697532048 0.000335037892477495 0.00430851891532778 0.0414 1 16575 77.379 53.95 1 6379300 16738 11820 15066 12393 17303 16643 16503 17906 11357 15024 15832 11169 15293 12758 17411 16537 16696 18365 11425 14562 1 1 1 1 1 1 1 1 1 1 2631 388 2310 2442 2941 2941 LDIPTGTTPQRK 12 Phospho (STY) _LDIPTGTT(ph)PQRK_ LDIPTGT(0.003)T(0.997)PQRK LDIPT(-68.8)GT(-25.93)T(25.93)PQRK 0 0 1 1 P52732 P52732 P52732 KIF11 Kinesin-like protein KIF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.348510742188 3 469.572825 1405.69664 39946.2452684945 1.093 0.00051324 325350 152.78 325350 152.78 622.348708282243 62.431 0.66765 62.431 62.122 62.79 -7.1054E-15 83 22 5 0.987090147971385 0.00785714923689499 0.207639662751276 1.9392E-10 1 14634 187 140.6 3 144780000 20470 24235 21244 23236 10563 22049 13916 18477 23662 3550.8 19373 22888 21222 23900 11407 22116 14272 18780 22934 3771.2 1 1 1 1 1 1 1 1 1 1 2632 696 2311 2443 2942 2942 4480 LDLLGNLPGSKR 12 Phospho (STY) _LDLLGNLPGS(ph)KR_ LDLLGNLPGS(1)KR LDLLGNLPGS(96.1)KR 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 607.685424804688 3 454.909548 1361.70682 41396.7563058547 1.759 0.00080019 335840 152.78 335840 152.78 608.018766883129 88.617 0.60076 88.617 88.338 88.939 0 46 20 3 0.942388267482337 0.00166686098594812 0.0374003725498263 0.0021716 1 20660 96.096 74.465 1 8320500 5896.9 5442.7 6215.8 4987 2184.7 5984.3 2911.8 5067.3 4807.2 3986 5581.2 5138.9 6192.7 5164.3 2467.1 5949.8 2980.9 5238.5 4662.9 3870.6 1 1 1 1 1 1 1 1 1 1 2633 603 2312 2444 2943 2943 988 LDPAQSASRENLLEEQGSIALR 22 Phospho (STY) _LDPAQSAS(ph)RENLLEEQGSIALR_ LDPAQS(0.281)AS(0.719)RENLLEEQGSIALR LDPAQS(-4.09)AS(4.09)RENLLEEQGS(-122.72)IALR 0 0 1 1 Q13813 Q13813 Q13813 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 903.129821777344 3 826.405908 2476.1959 34060.8934975315 1.2822 0.0010596 92433 76.387 92435 76.388 903.12784270216 79.972 0.40123 79.972 79.761 80.162 0 30 13 4 0.577682376875937 0.00114766399749582 0.0223476952493707 1.3272E-09 1 18717 175.39 143.31 3 9831000 4772.5 4044.6 5437.3 3693 4219.8 6435.5 3782 4447.1 3417 35044 4518.5 3818.8 5421.1 3857.4 4347.7 6369.2 3860.8 5593.7 3387 33101 1 1 1 1 1 1 1 1 1 1 2634 979 2313 2445 2944 2944 1656 LDPPPSPHANR 11 Phospho (STY) _LDPPPS(ph)PHANR_ LDPPPS(1)PHANR LDPPPS(78.51)PHANR 0 0 1 0 Q9UPQ3 Q9UPQ3 Q9UPQ3 AGAP1 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.919097900391 3 427.53096 1279.57105 44489.5078213076 0.82089 0.00035095 178670 76.388 178670 76.388 503.918672297823 37.784 0.7287 37.784 37.568 38.297 -7.1054E-15 53 24 3 0.857942583301279 0.00199470252537694 0.0336094633244796 0.0073676 1 8582 78.505 53.651 1 17012000 18485 16806 18585 16481 18769 18461 18400 17818 18439 2697.8 17492 15875 18710 16974 19031 18413 18749 17979 18192 2952.7 1 1 1 1 1 1 1 1 1 1 2635 2217 2314 2446 2945 2945 4012 LDQPVSAPPSPR 12 Phospho (STY) _LDQPVSAPPS(ph)PR_ LDQPVSAPPS(1)PR LDQPVS(-50.79)APPS(50.79)PR 0 0 1 0 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.903137207031 2 672.321392 1342.62823 35465.4934934613 1.1692 0.00078611 170430 114.58 170430 114.58 786.902712591499 52.124 1.2089 52.124 51.69 52.899 0 133 41 4 0.995572868380659 0.00190145905205312 0.0110999199068204 6.5764E-07 2 12063 139.49 109.97 2 58510000 39843 48646 41971 46563 35960 39059 33287 40893 47473 59933 37710 45942 42062 47816 36823 39622 34400 42753 46240 57380 2 2 2 2 2 2 2 2 2 2 2636 1101 2315 2447 2946;2947 2946 1912;1913 LDQPVSAPPSPR 12 2 Phospho (STY) _LDQPVS(ph)APPS(ph)PR_ LDQPVS(1)APPS(1)PR LDQPVS(54.14)APPS(54.14)PR 0 0 2 0 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.593383789063 3 475.205463 1422.59456 43386.3140619293 1.3087 0.0006219 160750 76.387 160750 76.388 551.592745372718 53.535 1.6642 53.535 53.118 54.782 0 96 56 2 0.646756917285467 0.0009202848111078 0.0100731579235918 0.036939 1 12538 54.143 38.254 1 11290000 8436.5 7463.9 9815.7 7789.5 6381 9583.2 5165.6 8091.4 8045.8 2039.7 7988.2 7052.7 9760.3 8006.9 6663.7 9510.8 5395.3 8235.5 7816.6 2107.8 1 1 1 1 1 1 1 1 1 1 2637 1101 2315 2448 2948 2948 1912;1913 LDQVVESPAIPR 12 Phospho (STY) _LDQVVES(ph)PAIPR_ LDQVVES(1)PAIPR LDQVVES(138.28)PAIPR 0 0 1 0 P16157 P16157 P16157 ANK1 Ankyrin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 816.935974121094 2 702.350149 1402.68575 34416.7881993098 1.9705 0.001384 163140 114.58 163140 114.58 817.433542699553 73.041 0.52165 73.041 72.778 73.3 0 54 17 4 0.73443676747821 0.000975177620865858 0.037588234220488 3.4265E-06 1 17122 138.28 87.821 1 26924000 7199.5 18832 6438.1 19832 16986 6185.9 16887 15018 21281 18438 6809.7 17796 6655.5 20083 16617 6954.9 17314 15277 20811 17710 1 1 1 1 1 1 1 1 1 1 2638 404 2316 2449 2949 2949 647 LDSKTDPASNTK 12 Phospho (STY) _LDS(ph)KTDPASNTK_ LDS(0.998)KT(0.002)DPASNTK LDS(26.33)KT(-26.33)DPAS(-71.72)NT(-80.45)K 0 0 1 1 Q15596 Q15596 Q15596 NCOA2 Nuclear receptor coactivator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.369750976563 3 452.87294 1355.59699 39302.3343791689 2.4505 0.0011097 506020 229.16 506020 229.16 682.369745095577 49.328 0.51833 49.328 49.14 49.658 0 44 17 4 0.987694227331583 0.0021818305761473 0.0318374598697061 0.00014671 1 11451 102.29 83.84 4 13524000 20268 14485 21515 14398 23290 21734 25078 20128 14827 6367.6 19183 13683 21618 14906 23545 21450 25160 20444 15065 6461.7 1 1 1 1 1 1 1 1 1 1 2639 1080 2317 2450 2950 2950 1871 LDSQEPGRQTPDR 13 Phospho (STY) _LDSQEPGRQT(ph)PDR_ LDS(0.001)QEPGRQT(0.999)PDR LDS(-28.36)QEPGRQT(28.36)PDR 0 0 1 1 Q8TB03 Q8TB03 Q8TB03 CXorf38 Uncharacterized protein CXorf38 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.292358398438 3 526.901781 1577.68351 40152.2120043507 1.4646 0.00077171 144980 76.388 144980 76.389 603.289239733614 32.782 0.46767 32.782 32.586 33.054 0 52 15 5 0.96562651949145 0.00371709718176337 0.038063939180028 0.00035146 1 7315 108.77 78.561 2 62825000 10278 15028 12371 13539 23676 11379 23598 17477 14555 2624.3 9733.3 14188 12475 13958 23350 11584 23777 17374 14745 2875.6 1 1 1 1 1 1 1 1 1 1 2640 1535 2318 2451 2951 2951 4698 LDSQPQETSPELPR 14 Phospho (STY) _LDSQPQETS(ph)PELPR_ LDSQPQET(0.035)S(0.965)PELPR LDS(-60.75)QPQET(-14.4)S(14.4)PELPR 0 0 1 0 O14545 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 953.962463378906 2 838.879999 1675.74545 31824.5807404638 1.3435 0.0011271 136590 114.58 136590 114.58 953.462121069361 58.07 1.1918 58.07 57.506 58.698 7.1054E-15 131 40 5 0.979331966484633 0.00143051161145704 0.0163146089959124 3.1174E-10 1 13552 179.33 102.07 3 202400000 16093 17583 14751 16695 7062.3 16037 8766.4 12765 19052 8868.7 15223 16605 14840 17185 7654.7 16080 9123.3 13198 18362 8646.4 1 1 1 1 1 1 1 1 1 1 2641 59 2319 2452 2952 2952 97 LDSSPSVSSTLAAK 14 Phospho (STY) _LDSS(ph)PSVSSTLAAK_ LDS(0.302)S(0.503)PS(0.195)VSSTLAAK LDS(-2.22)S(2.22)PS(-4.12)VS(-46.92)S(-56.68)T(-60.66)LAAK 0 0 1 0 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 951.506164550781 2 721.842354 1441.67015 32634.8157000882 1.6577 0.0011966 317470 229.16 317470 229.16 951.005233216433 70.724 0.86843 70.724 70.333 71.202 0 66 29 3 0.963254750779965 0.000953611301753792 0.00499639035545398 2.5757E-06 1 16544 138.55 93.941 6 52917000 13006 22216 16981 22893 11473 15505 10270 18329 24561 42723 12322 20991 16801 23346 11964 15987 10903 19563 23628 40653 1 1 1 1 1 1 1 1 1 1 2642 953 2320 2453 2953 2953 1598 LDTDDLDEIEK 11 Unmodified _LDTDDLDEIEK_ 0 0 0 0 Q9NUU7;Q9UMR2 Q9NUU7 Q9NUU7 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.474487304688 2 653.306455 1304.59836 33835.5865941874 2.4699 0.0016136 350770 229.16 350780 229.16 882.470494438002 77.022 0.63097 77.022 76.737 77.368 0 75 21 5 0.795741588184227 0.00196758972310262 0.0209964176914302 9.0368E-10 1 18044 197.21 149.39 1 44358000 27599 29662 26575 25725 39883 27310 38236 33078 28936 26628 26112 27999 26978 26680 39656 27426 38745 33758 28946 25839 1 1 1 1 1 1 1 1 1 1 2643 2042 2321 2454 2954 2954 LDTGPQSLSGK 11 Phospho (STY) _LDTGPQSLS(ph)GK_ LDTGPQS(0.015)LS(0.985)GK LDT(-82.06)GPQS(-18.32)LS(18.32)GK 0 0 1 0 P35269 P35269 P35269 GTF2F1 General transcription factor IIF subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 820.937438964844 2 591.773743 1181.53293 34255.2171034624 2.6717 0.001581 387250 229.16 387250 229.16 820.936552720529 60.129 0.49098 60.129 59.907 60.398 0 45 16 4 0.688986201578594 0.00203818782456054 0.0439400894948347 3.4064E-07 1 14088 167.01 126.24 3 25902000 41521 20700 39930 21811 10697 41556 13108 26078 22312 7956.6 39284 19561 39946 22644 12624 40593 13479 26998 21625 8095.6 1 1 1 1 1 1 1 1 1 1 2644 546 2322 2455 2955 2955 884 LDTGSPEPETR 11 Phospho (STY) _LDTGS(ph)PEPETR_ LDT(0.094)GS(0.906)PEPETR LDT(-9.82)GS(9.82)PEPET(-52.14)R 0 0 1 0 Q9Y2F5 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.852722167969 2 641.271565 1280.52858 35742.4818803422 1.8681 0.001198 178680 114.58 178680 114.58 755.852668958707 42.352 0.48747 42.352 42.08 42.568 0 37 16 3 0.966349644254747 0.000812302291756045 0.0368293464386507 1.0801E-06 1 9662 147.42 121.3 3 12514000 15757 17668 15526 18121 14914 14771 12675 16870 18046 9501 14910 16693 15635 18525 15144 14999 13156 17127 17578 9336.8 1 1 1 1 1 1 1 1 1 1 2645 2243 2323 2456 2956 2956 4139 LEDTENWLYEDGEDQPK 17 Unmodified _LEDTENWLYEDGEDQPK_ 0 0 0 0 P34932 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.411926269531 3 694.304246 2079.89091 34291.7119001231 1.5248 0.0010587 220040 152.78 220040 152.78 847.41374733205 85.598 0.59839 85.598 85.301 85.9 0 81 20 5 0.910941846771799 0.00436280925141909 0.0206758281937718 1.0984E-10 1 19955 183.31 162.37 1 44482000 8738.6 11381 9796.1 11570 8886.6 11587 9726.5 12672 13805 19171 8272.9 10752 9793.7 11869 9087.5 11663 9972.1 13247 13448 18345 1 1 1 1 1 1 1 1 1 1 2646 539 2324 2457 2957 2957 LEEPPELNRQSPNPR 15 Phospho (STY) _LEEPPELNRQS(ph)PNPR_ LEEPPELNRQS(1)PNPR LEEPPELNRQS(212.34)PNPR 0 0 1 1 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.015991210938 3 619.29479 1854.86254 37542.3152746652 1.001 0.00061994 123350 76.387 123350 76.388 696.015893376025 54.702 1.0954 54.702 54.268 55.364 0 165 37 7 0.944833725277765 0.00527067222471995 0.0159381621331638 5.2479E-12 1 12706 212.34 189.24 1 768570000 47353 27803 56479 27795 26312 53245 26986 39566 31864 9252.6 44842 26265 55978 28949 28497 52080 27570 40497 31233 9628.2 1 1 1 1 1 1 1 1 1 1 2647 1350 2325 2458 2958 2958 2442 LEGNSPQGSNQGVK 14 Phospho (STY) _LEGNSPQGS(ph)NQGVK_ LEGNSPQGS(1)NQGVK LEGNS(-75.92)PQGS(75.92)NQGVK 0 0 1 0 P61006 P61006 P61006 RAB8A Ras-related protein Rab-8A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.667419433594 3 498.890993 1493.65115 38590.4878765804 1.4138 0.00070533 306230 152.78 306230 152.78 651.666468734823 47.683 0.4351 47.683 47.511 47.946 7.1054E-15 39 14 4 0.645084804613859 0.00251933470134756 0.051104847432415 1.7867E-05 2 11075 135.29 108.29 2 26060000 46480 32994 42800 30353 33288 49476 34312 36973 28322 56202 43968 31154 43194 31634 34352 48688 34714 39265 28200 53776 2 2 2 2 2 2 2 2 2 2 2648 745 2326 2459 2959;2960 2960 1230 LEGSAPTDVLDSLTTIPELK 20 Phospho (STY) _LEGS(ph)APTDVLDSLTTIPELK_ LEGS(0.98)APT(0.02)DVLDSLTTIPELK LEGS(16.81)APT(-16.81)DVLDS(-82.72)LT(-99.18)T(-107.56)IPELK 0 0 1 0 Q86UX7 Q86UX7 Q86UX7 FERMT3 Fermitin family homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.1416015625 3 727.030897 2178.07086 34466.279274663 1.525 0.0011087 210140 152.78 210140 152.78 880.140241432658 102.35 0.4079 102.35 102.28 102.68 0 37 13 5 0.983837829637952 0.00233694921761995 0.0213719539880659 2.4559E-06 1 24137 137.45 111.3 5 109110000 4088.4 3136.4 4315 3967.4 12743 5194.3 14624 7289.2 4813.1 44088 3869.6 2967.6 4438.7 4042.6 12452 5261 14527 8558.9 5165.2 41683 1 1 1 1 1 1 1 1 1 1 2649 1375 2327 2460 2961 2961 2490 LEGVDGGQSPR 11 Phospho (STY) _LEGVDGGQS(ph)PR_ LEGVDGGQS(1)PR LEGVDGGQS(180.3)PR 0 0 1 0 O00418 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.344360351563 2 597.761167 1193.50778 37183.9284136887 1.8725 0.0011193 191680 114.58 191690 114.58 712.342552853227 46.905 0.60487 46.905 46.602 47.207 -7.1054E-15 67 20 4 0.978929453383884 0.00222211425394858 0.0497478461135208 5.7674E-10 1 10799 180.3 122.51 1 118020000 24112 24484 24429 23583 26108 20558 26244 23559 23752 7720.7 22817 23124 24601 24220 26395 20793 26639 23748 23542 7815.2 1 1 1 1 1 1 1 1 1 1 2650 45 2328 2461 2962 2962 68 LEIYQSSQDEPIALDK 16 Phospho (STY) _LEIYQSS(ph)QDEPIALDK_ LEIYQS(0.156)S(0.844)QDEPIALDK LEIY(-58.97)QS(-7.33)S(7.33)QDEPIALDK 0 0 1 0 Q96MY1 Q96MY1 Q96MY1 NOL4L Nucleolar protein 4-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.410217285156 3 643.634478 1927.8816 35604.8334083078 1.9434 0.0012508 237360 152.78 237370 152.78 796.744754208167 91.984 0.42992 91.984 91.74 92.169 -1.4211E-14 25 14 2 0.642226792791624 0.00105102827741379 0.023666644662773 0.00096407 1 21432 99.059 81.57 3 8992800 4007.9 4697.2 4320.1 3942.6 6995.6 4562.2 6414.5 6187.8 4617.5 33483 3793.7 4433 4363.8 4104.2 6931.3 4628.7 6508.1 7152.8 4632.3 31672 1 1 1 1 1 1 1 1 1 1 2651 1717 2329 2462 2963 2963 3161 LEKPETQSSPITVQSSK 17 Phospho (STY) _LEKPETQSS(ph)PITVQSSK_ LEKPETQS(0.084)S(0.916)PITVQSSK LEKPET(-35.07)QS(-10.39)S(10.39)PIT(-52.51)VQS(-83.32)S(-96.94)K 0 0 1 1 Q96CB8 Q96CB8 Q96CB8 INTS12 Integrator complex subunit 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.482238769531 3 646.985511 1937.9347 34268.960705284 1.6726 0.0010822 354200 229.16 354200 229.16 876.147781563852 59.747 0.51278 59.747 59.51 60.023 7.1054E-15 54 17 4 0.987261362252572 0.0030973958640363 0.0157230922319399 3.4437E-11 1 13998 202.66 174.45 6 36173000 25066 23179 29703 23475 25074 26981 23175 27879 29245 8564.8 23736 21898 29583 24142 25698 26916 23847 28188 28599 8710 1 1 1 1 1 1 1 1 1 1 2652 1663 2330 2463 2964 2964 3060 LELQGPRGSPNAR 13 Phospho (STY) _LELQGPRGS(ph)PNAR_ LELQGPRGS(1)PNAR LELQGPRGS(120.39)PNAR 0 0 1 1 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 568.631591796875 3 492.24359 1473.70894 41287.0464426008 1.3021 0.00064096 155180 76.387 155180 76.388 568.631511606405 50.1 1.8632 50.1 49.511 51.374 0 210 63 6 0.822471865827911 0.0111843472057366 0.262066837819748 8.3033E-05 1 11567 120.39 97.478 1 1420100000 29818 26720 27384 26758 37452 29359 36448 33250 27829 4631.1 28206 25241 27835 27514 37390 29369 36914 33341 27824 5130.3 1 1 1 1 1 1 1 1 1 1 2653 437 2331 2464 2965 2965 712 LENSPLGEALR 11 Phospho (STY) _LENS(ph)PLGEALR_ LENS(1)PLGEALR LENS(91.7)PLGEALR 0 0 1 0 Q9NX40 Q9NX40 Q9NX40 OCIAD1 OCIA domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.390991210938 2 639.808117 1277.60168 36516.1425376508 2.1677 0.0013869 179090 114.58 179090 114.58 754.389857729302 74.199 0.55652 74.199 73.983 74.54 -1.4211E-14 49 18 4 0.769366894924702 0.00103290294693955 0.0468920742207959 0.0053726 1 17400 91.699 39.858 1 24857000 11628 13888 11590 14120 10690 12233 12435 13766 14127 15436 11003 13121 11664 14454 10928 12394 12620 14214 13867 14854 1 1 1 1 1 1 1 1 1 1 2654 2059 2332 2465 2966 2966 3726 LENVSQLSLDKSPTEK 16 Phospho (STY) _LENVSQLSLDKS(ph)PTEK_ LENVSQLS(0.004)LDKS(0.977)PT(0.019)EK LENVS(-68)QLS(-24.22)LDKS(17.15)PT(-17.15)EK 0 0 1 1 Q86W56 Q86W56 Q86W56 PARG Poly(ADP-ribose) glycohydrolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.804626464844 3 623.306473 1866.89759 33762.1477363502 2.2159 0.0013812 367660 229.16 367660 229.16 852.80410948891 77.068 0.51526 77.068 76.824 77.339 -1.4211E-14 53 17 4 0.851624179790813 0.00328869569950404 0.0155002796274163 4.6806E-07 1 18065 146.99 117.35 4 21840000 19328 27317 23079 28363 14309 21707 17884 23043 32819 20901 18303 25812 22923 28952 15104 22111 18442 23692 31749 20214 1 1 1 1 1 1 1 1 1 1 2655 1385 2333 2466 2967 2967 2511 LEPQELSPLSATVFPK 16 Phospho (STY) _LEPQELS(ph)PLSATVFPK_ LEPQELS(0.997)PLS(0.003)ATVFPK LEPQELS(25.69)PLS(-25.69)AT(-41.23)VFPK 0 0 1 0 Q9H869;Q3T8J9 Q9H869 Q9H869 YY1AP1;GON4L YY1-associated protein 1;GON-4-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.7568359375 3 612.644537 1834.91178 35682.1709036648 2.2401 0.0013724 249370 152.78 249370 152.78 765.754451167636 100.39 0.1384 100.39 100.31 100.45 1.4211E-14 14 4 4 0.717533967677639 0.000893404037888124 0.0105231152472097 0.0086581 1 23479 77.871 56.918 3 70984000 11686 14904 11849 14102 11248 15628 10718 15938 17407 153080 11058 14075 11913 14553 11449 15889 11118 20588 16892 144510 1 1 1 1 1 1 1 1 1 1 2656 1957 2334 2467 2968 2968 3564 LEPSTSTDQPVTPEPTSQATR 21 Phospho (STY) _LEPSTSTDQPVT(ph)PEPTSQATR_ LEPSTSTDQPVT(1)PEPTSQATR LEPS(-44.51)T(-38.52)S(-38.52)T(-38.52)DQPVT(38.52)PEPT(-45.47)S(-50.46)QAT(-55.48)R 0 0 1 0 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.411499023438 3 774.688081 2321.04242 33612.8479447329 1.924 0.0014905 98604 76.388 98606 76.389 851.409731598142 51.338 0.32258 51.338 51.195 51.517 0 24 10 3 0.97617142899564 0.00148306082009573 0.00891727746272561 6.7656E-05 1 11950 115.58 98.434 8 15159000 8507.5 7839.9 7551.5 9337.3 7020.9 7711.3 6357.9 7235.7 9610.5 11422 8046.7 7414.7 7651.1 9469.7 7149.9 7817.5 6592.7 7620.5 9344.8 10923 1 1 1 1 1 1 1 1 1 1 2657 1016 2335 2468 2969 2969 4558 LEQNGSPLGR 10 Phospho (STY) _LEQNGS(ph)PLGR_ LEQNGS(1)PLGR LEQNGS(113.82)PLGR 0 0 1 0 Q01826 Q01826 Q01826 SATB1 DNA-binding protein SATB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.347900390625 2 575.766252 1149.51795 37275.2967420733 1.3869 0.0007985 199010 114.58 199010 114.58 690.346752338374 48.738 0.68995 48.738 48.334 49.024 0 51 23 3 0.961312874695793 0.00102658000924781 0.013518806292802 0.00030086 1 11300 113.82 78.884 1 38115000 43329 12672 41461 13808 15167 41520 17107 22059 13039 9429.9 40993 11977 41538 14554 16967 40154 17209 23165 13038 9389.9 1 1 1 1 1 1 1 1 1 1 2658 844 2336 2469 2970 2970 1362 LEQNGSPMGAR 11 Phospho (STY) _LEQNGS(ph)PMGAR_ LEQNGS(1)PMGAR LEQNGS(214.69)PMGAR 0 0 1 0 Q9UPW6 Q9UPW6 Q9UPW6 SATB2 DNA-binding protein SATB2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.845520019531 2 620.26302 1238.51149 36413.7453075546 1.77 0.0010978 184730 114.58 184730 114.58 734.844461730106 43.869 0.79259 43.869 43.551 44.344 0 68 26 4 0.850461272401044 0.00271150553111261 0.0947005879105794 1.1664E-14 1 10071 214.69 158.48 1 37406000 45144 26449 45783 25770 10865 45946 9711.1 26333 26015 5058.5 42720 24982 45634 26825 13087 44917 10387 27326 24978 5372.6 1 1 1 1 1 1 1 1 1 1 2659 2222 2337 2470 2971 2971 4024 LEQQSVPAAVFGSLKED 17 Phospho (STY) _LEQQSVPAAVFGS(ph)LKED_ LEQQSVPAAVFGS(1)LKED LEQQS(-78.84)VPAAVFGS(78.84)LKED 0 0 1 1 Q9HCS7 Q9HCS7 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.412658691406 3 633.302951 1896.88702 34926.8830579571 1.3233 0.00083804 241240 152.78 241240 152.78 786.412114939895 91.691 0.77352 91.691 91.396 92.169 1.4211E-14 87 26 5 0.941119242009438 0.00613835060000494 0.0945631093656621 1.9618E-05 1 21340 131.33 110.96 2 44603000 5637.7 5054.7 5612.6 5013.9 13047 6537.7 13822 9627.2 5136.3 36377 5334.6 4774.7 5745.5 5175.1 12804 6592.3 13795 10633 5436.4 34476 1 1 1 1 1 1 1 1 1 1 2660 1991 2338 2471 2972 2972 3616 LERTPQK 7 Phospho (STY) _LERT(ph)PQK_ LERT(1)PQK LERT(79.12)PQK 0 0 1 1 P35251 P35251 P35251 RFC1 Replication factor C subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 470.601989746094 3 317.826825 950.458646 45535.2876440507 0.7343 0.00023338 480690 152.78 480690 152.78 470.601992752336 38.024 0.7287 38.024 37.568 38.297 -7.1054E-15 71 24 5 0.904524257846005 0.00379164859648172 0.0549129317028651 0.02356 1 8581 79.116 50.319 1 50940000 48653 25483 49199 26683 28016 46821 29524 37573 29654 1804.4 46040 24080 49253 27647 29703 45920 29984 38101 29254 2568.6 1 1 1 1 1 1 1 1 1 1 2661 544 2339 2472 2973 2973 4448 LESESTSPSLEMK 13 Phospho (STY) _LESESTS(ph)PSLEMK_ LESES(0.008)T(0.069)S(0.922)PS(0.001)LEMK LES(-37.1)ES(-20.55)T(-11.27)S(11.27)PS(-31.4)LEMK 0 0 1 0 Q5VT52 Q5VT52 Q5VT52 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.329223632813 3 506.552878 1516.63681 38647.0463633246 1.9093 0.00096714 301600 152.77 301600 152.78 659.328257779152 69.822 0.81591 69.822 69.46 70.276 0 68 27 4 0.843452615780781 0.00260447223695184 0.0198363525204293 0.0036902 1 16394 91.076 68.197 5 19804000 11714 8934.1 11366 9364.7 8118.2 12905 8858.8 9889.7 9588.3 6012.7 11083 8442.2 11427 9646 8441.3 12751 9001.9 10218 9429.9 5890.5 1 1 1 1 1 1 1 1 1 1 2662 1201 2340 2473 2974 2974 2101 LESPTVSTLTPSSPGK 16 Phospho (STY) _LESPTVSTLTPSS(ph)PGK_ LESPTVSTLT(0.007)PS(0.257)S(0.736)PGK LES(-71.77)PT(-65.49)VS(-50.71)T(-42.8)LT(-20.31)PS(-4.56)S(4.56)PGK 0 0 1 0 Q96C36 Q96C36 Q96C36 PYCR2 Pyrroline-5-carboxylate reductase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.051635742188 3 560.941242 1679.8019 37783.41948711 2.1501 0.0012061 272360 152.78 272360 152.78 714.050091102616 72.186 0.408 72.186 72.017 72.425 0 33 13 3 0.818298983203025 0.00136722776957946 0.00646145116271783 8.5983E-05 1 16951 114.4 72.306 7 9267100 7273.3 8946.8 8449.3 11934 6482.9 6823.8 6582.7 7999.9 10684 9496.4 6886.8 8468.7 8416.4 11989 6700.3 7100.6 6808.2 8265.1 10368 9127.2 1 1 1 1 1 1 1 1 1 1 2663 1660 2341 2474 2975 2975 3057 LESTSPK 7 Phospho (STY) _LEST(ph)SPK_ LES(0.083)T(0.824)S(0.093)PK LES(-9.97)T(9.46)S(-9.46)PK 0 0 1 0 Q03111 Q03111 Q03111 MLLT1 Protein ENL MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.353149414063 2 421.188784 840.363014 38831.6201169281 2.2227 0.00093617 544090 229.16 544090 229.16 650.352066841993 45.789 0.70284 45.789 45.495 46.198 0 66 23 4 0.947796073303262 0.00634058218740074 0.16071253493488 0.023476 1 10531 73.196 34.582 3 96150000 91242 67154 90595 72972 61903 85619 69369 80012 67369 4132.9 86336 63471 90924 74774 64617 85193 70198 80600 66557 5743.4 1 1 1 1 1 1 1 1 1 1 2664 856 2342 2475 2976 2976 4510 LETLDGGQEDGSEADR 16 Unmodified _LETLDGGQEDGSEADR_ 0 0 0 0 Q9Y5S1 Q9Y5S1 Q9Y5S1 TRPV2 Transient receptor potential cation channel subfamily V member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 960.95556640625 2 846.371377 1690.7282 32225.8497142507 2.0408 0.0017273 135380 114.58 135380 114.58 961.454450280229 53.855 0.40596 53.855 53.625 54.031 0 28 13 3 0.883300665428881 0.000289878611980266 0.00858269663793862 5.4448E-41 1 12574 337.22 303.26 1 6863400 7042.6 10160 6476.7 10624 8347.4 7227.1 10337 8849.5 12085 8101.4 6661.9 9600.4 6580.8 10825 8390.3 7431.2 10474 9058 11850 7833.2 1 1 1 1 1 1 1 1 1 1 2665 2299 2343 2476 2977 2977 LEVTEIVKPSPK 12 Phospho (STY) _LEVTEIVKPS(ph)PK_ LEVTEIVKPS(1)PK LEVT(-51.06)EIVKPS(51.06)PK 0 0 1 1 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.085754394531 3 473.921342 1418.7422 37818.0458012534 2.7174 0.0012878 483550 229.16 483550 229.16 703.08415616808 79.243 0.94579 79.243 78.926 79.872 0 113 32 5 0.75750897775351 0.00336837381838012 0.055031958646802 0.0053351 1 18553 85.362 67.662 2 43266000 25734 21690 26651 24988 23761 24450 25704 24113 26298 6603.1 24355 20508 26752 25447 24312 24540 26087 24399 25923 6775.6 1 1 1 1 1 1 1 1 1 1 2666 1353 2344 2477 2978 2978 2455 LFDHPESPTPNPTEPLFLAQAEVYK 25 Phospho (STY) _LFDHPES(ph)PTPNPTEPLFLAQAEVYK_ LFDHPES(0.852)PT(0.148)PNPTEPLFLAQAEVYK LFDHPES(7.6)PT(-7.6)PNPT(-67.92)EPLFLAQAEVY(-224.71)K 0 0 1 0 P49327 P49327 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.683776855469 4 730.850574 2919.37319 33298.3001565882 1.9684 0.0014386 156780 114.58 156780 114.58 845.932396843504 100.42 0.22294 100.42 100.34 100.56 1.4211E-14 26 7 6 0.925723335742186 0.00425255042977578 0.0381681477329923 6.8993E-18 1 23481 230.94 211.56 4 61143000 11825 13207 11876 13218 7904.9 10543 8998.8 13699 18626 132020 11190 12476 11909 13528 8281 10975 9371.1 17597 17970 124630 1 1 1 1 1 1 1 1 1 1 2667 636 2345 2478 2979 2979 1052 LFDQQLSPGLRPR 13 Phospho (STY) _LFDQQLS(ph)PGLRPR_ LFDQQLS(1)PGLRPR LFDQQLS(81.51)PGLRPR 0 0 1 1 Q92835 Q92835 Q92835 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 612.6630859375 3 536.27489 1605.80284 39537.5476903499 1.5731 0.0008436 142440 76.387 142440 76.388 612.662442544602 77.579 0.72582 77.579 77.225 77.951 0 96 24 6 0.976671840542204 0.00396674906709906 0.0508847650285336 0.0068904 1 18147 81.51 62.12 1 89331000 2931.5 2291 4205.7 3001.2 13343 3726.8 13297 5799.6 2614.8 3335 2778.7 2168.3 4273.4 3049.8 12990 3735.4 13245 5837.6 3033.1 3274.5 1 1 1 1 1 1 1 1 1 1 2668 1625 2346 2479 2980 2980 3005 LFDQQLSPGLRPRPQVPGEANPINMVSK 28 Oxidation (M),Phospho (STY) _LFDQQLS(ph)PGLRPRPQVPGEANPINM(ox)VSK_ LFDQQLSPGLRPRPQVPGEANPINM(1)VSK LFDQQLS(1)PGLRPRPQVPGEANPINMVSK LFDQQLSPGLRPRPQVPGEANPINM(159.78)VSK LFDQQLS(122.8)PGLRPRPQVPGEANPINMVS(-122.8)K 0 1 1 2 Q92835 Q92835 Q92835 INPP5D Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 911.737670898438 4 796.904781 3183.59002 33840.338717441 1.713 0.0013651 143780 114.58 143780 114.58 911.736525621785 83.5 0.60757 83.5 83.262 83.87 0 66 20 5 0.970214382766788 0.00526119044732742 0.20198367834313 8.8826E-08 1 19523 159.78 140.66 2 19357000 3280.5 1548.1 2962.1 2361.8 15699 2292.4 14443 6902.3 2729.8 22806 3103 1467.1 3154.5 2374.3 15150 2401.7 14441 7432 3190.2 21634 1 1 1 1 1 1 1 1 1 1 2669 1625 2347 2480 2981 2981 190 3005 LFDTPHTPK 9 Phospho (STY) _LFDTPHT(ph)PK_ LFDTPHT(1)PK LFDT(-36.19)PHT(36.19)PK 0 0 1 0 P30291 P30291 P30291 WEE1 Wee1-like protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.95263671875 3 379.177635 1134.51108 43940.3459464365 0.9092 0.00034475 402910 152.78 402910 152.78 531.953095465078 64.397 0.72977 64.397 64.035 64.765 0 71 24 4 0.95339861725813 0.00213629861109231 0.0183896561607379 0.00023431 1 15113 125.46 90.774 2 19821000 13121 6154.9 13546 6782.7 2607.8 13054 3442.5 8307.3 6664.8 1495.8 12417 5817.9 13483 7026.7 3307.1 12748 3552.3 8561.8 6439.5 1600.7 1 1 1 1 1 1 1 1 1 1 2670 514 2348 2481 2982 2982 4440 LFGHSGSGK 9 Phospho (STY) _LFGHS(ph)GSGK_ LFGHS(0.566)GS(0.434)GK LFGHS(1.16)GS(-1.16)GK 0 0 1 0 P53355 P53355 P53355 DAPK1 Death-associated protein kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 476.5859375 3 323.811175 968.411696 45967.874614901 -0.44077 -0.00014272 471800 152.78 471800 152.78 476.586362673846 51.896 0.6623 51.896 51.66 52.323 0 44 22 3 0.910761994963966 0.00188559577643056 0.00641275606507744 0.0064761 1 12062 80.979 57.23 2 23052000 16655 17969 16807 20158 13133 17934 15217 18754 18759 1825.6 15760 16987 16874 20528 13577 18090 15486 18835 18359 2153.1 1 1 1 1 1 1 1 1 1 1 2671 700 2349 2482 2983 2983 1176 LFPADTSPSTATK 13 Phospho (STY) _LFPADT(ph)SPSTATK_ LFPADT(0.588)S(0.406)PS(0.004)T(0.001)ATK LFPADT(1.61)S(-1.61)PS(-21.44)T(-26.89)AT(-40.37)K 0 0 1 0 Q6NZY4 Q6NZY4 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 937.993774414063 2 708.32634 1414.63813 32168.9821507094 2.3737 0.0016814 323530 229.16 323530 229.17 937.489882666155 77.027 0.60293 77.027 76.707 77.31 0 68 20 4 0.872098195193756 0.00218099027277509 0.02713574180156 0.00027797 1 18033 109.6 61.596 5 41558000 17528 15388 17153 15997 14987 15671 16196 15802 15219 19928 16584 14540 17269 16383 15353 15762 16401 16446 15058 19130 1 1 1 1 1 1 1 1 1 1 2672 1251 2350 2483 2984 2984 4620 LFPSPGLPTRTSPVR 15 Phospho (STY) _LFPSPGLPTRTS(ph)PVR_ LFPSPGLPT(0.045)RT(0.118)S(0.837)PVR LFPS(-53.64)PGLPT(-12.7)RT(-8.49)S(8.49)PVR 0 0 1 1 Q8IY17 Q8IY17 Q8IY17 PNPLA6 Neuropathy target esterase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.690185546875 3 568.965945 1703.87601 39242.8721124689 1.6788 0.00095518 134260 76.388 134260 76.389 645.353687764939 78.811 0.73132 78.811 78.432 79.164 0 88 24 5 0.970311158994252 0.00539362622190487 0.0632101816837518 0.00015986 1 18427 102.55 79.94 4 46570000 7078.3 6687.9 7795 7174 8936.7 7358.4 9209.6 8513.9 7766.7 4574.7 6700.5 6320.6 7822.4 7339.3 9004 7390.6 9321.9 8633.1 7724.6 4504.6 1 1 1 1 1 1 1 1 1 1 2673 1430 2351 2484 2985 2985 2609 LFQLGPPSPVK 11 Phospho (STY) _LFQLGPPS(ph)PVK_ LFQLGPPS(1)PVK LFQLGPPS(79.81)PVK 0 0 1 0 Q9NZH5;O95997 Q9NZH5 Q9NZH5 PTTG2;PTTG1 Securin-2;Securin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.331848144531 3 421.556335 1261.64718 41250.2480087109 1.7649 0.00074398 362410 152.78 362410 152.78 574.331470902817 97.716 0.95268 97.716 97.243 98.195 0 116 32 5 0.953919097199773 0.00350659700186583 0.0580974631279092 0.0069569 1 22633 79.81 56.206 1 67872000 3123.4 5192.2 2903.5 5500.4 2965.8 3171.3 3120.9 4700.9 6796.2 5132 2954.7 4906.7 2937.3 5591.4 3011.7 3311.6 3270 4810.7 6549.9 4941.2 1 1 1 1 1 1 1 1 1 1 2674 272 2352 2485 2986 2986 454 LFRPPSPAPAAPGAR 15 Phospho (STY) _LFRPPS(ph)PAPAAPGAR_ LFRPPS(1)PAPAAPGAR LFRPPS(175.59)PAPAAPGAR 0 0 1 1 Q86U90 Q86U90 Q86U90 YRDC YrdC domain-containing protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.328308105469 3 528.93973 1583.79736 39177.7464508102 0.81302 0.00043004 144420 76.388 144420 76.388 605.32793366818 65.798 1.7218 65.798 64.794 66.516 0 206 58 6 0.997087624364233 0.0256607583873422 0.277755271018073 9.3364E-09 2 15497 175.59 151.74 1 379200000 29726 81469 26406 79458 25029 25539 28534 42981 76534 5784.4 28116 76949 26770 80841 25576 28235 30191 42612 73480 6441.4 2 2 2 2 2 2 2 2 2 2 2675 1368 2353 2486 2987;2988 2988 2479 LFSLSNPSLSTTNLSGPSR 19 Phospho (STY) _LFSLS(ph)NPSLSTTNLSGPSR_ LFS(0.03)LS(0.969)NPS(0.001)LSTTNLSGPSR LFS(-15.11)LS(15.11)NPS(-30.8)LS(-65.19)T(-85.55)T(-93.7)NLS(-121.37)GPS(-132.93)R 0 0 1 0 Q6UUV7 Q6UUV7 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.391723632813 3 686.668293 2056.98305 36375.2018175656 1.8741 0.0012869 111240 76.388 111250 76.389 763.056060856422 98.272 0.58165 98.272 97.992 98.574 0 57 19 4 0.981077594371703 0.0046681502587636 0.152267235973032 1.6087E-07 1 22791 147.08 107.4 8 14906000 3421.2 2703.8 4022 3440.8 2864.4 3618.3 3805.2 4298.4 3738.2 12820 3239.6 2558.4 4003 3490.8 2988.4 3651.5 3826.3 4671.6 3691.3 12171 1 1 1 1 1 1 1 1 1 1 2676 1282 2354 2487 2989 2989 2281 LFVGSIPK 8 Phospho (STY) _LFVGS(ph)IPK_ LFVGS(1)IPK LFVGS(88.68)IPK 0 0 1 0 O60506;O43390 O60506 O60506 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.912780761719 2 470.748811 939.48307 39670.2059624938 2.5125 0.0011827 486800 229.16 486810 229.16 699.911311609245 92.673 0.54782 92.673 92.424 92.972 0 31 18 2 0.967826553173721 0.000765237008837468 0.0193887165460056 0.0085471 1 21589 88.681 64.345 1 6982500 7792.4 7578.7 7037.2 7757.7 7706.5 7674.2 7787.3 9979.4 7864 17536 7370.8 7160.4 7137.8 7953.1 7782.3 7757.9 7925.1 10449 7756.2 16743 1 1 1 1 1 1 1 1 1 1 2677 148 2355 2488 2990 2990 253 LFVLLPEQSPVSYSK 15 Phospho (STY) _LFVLLPEQS(ph)PVSYSK_ LFVLLPEQS(0.977)PVS(0.021)Y(0.002)SK LFVLLPEQS(16.68)PVS(-16.68)Y(-28.13)S(-36.58)K 0 0 1 0 Q96K76 Q96K76 Q96K76 USP47 Ubiquitin carboxyl-terminal hydrolase 47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.081298828125 3 596.305744 1785.8954 36111.9601122359 1.6303 0.00097218 256200 152.77 256200 152.78 749.07937055539 101.91 0.19538 101.91 101.84 102.04 0 18 6 4 0.756846549111204 0.00097474875427092 0.0200981479193658 0.0057837 1 24013 85.808 73.041 4 35230000 5608.7 8517.4 4440.2 7733.7 6623.4 5840.7 6085.7 7189.1 9582 27516 5302.9 8041.6 4563.9 7958.1 6588.2 6007.6 6316.2 7988.1 9306.3 26076 1 1 1 1 1 1 1 1 1 1 2678 1706 2356 2489 2991 2991 3143 LGAGEGGEASVSPEK 15 Phospho (STY) _LGAGEGGEASVS(ph)PEK_ LGAGEGGEAS(0.004)VS(0.996)PEK LGAGEGGEAS(-23.82)VS(23.82)PEK 0 0 1 0 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 963.989685058594 2 734.321786 1466.62902 32065.4451341386 1.5099 0.0011088 312070 229.16 312080 229.16 963.985921166661 54.292 0.60793 54.292 53.974 54.582 0 62 20 4 0.894463183688308 0.00217436909160002 0.0724084304862865 5.6442E-13 1 12630 213.29 191.09 2 77009000 22162 33531 24554 33643 20482 23495 22513 26090 35753 12746 20980 31676 24541 34374 21067 24059 23182 26454 34716 12606 1 1 1 1 1 1 1 1 1 1 2679 953 2357 2490 2992 2992 1596 LGAGEGGEASVSPEKTSTTSK 21 Phospho (STY) _LGAGEGGEASVS(ph)PEKTSTTSK_ LGAGEGGEAS(0.003)VS(0.997)PEKTSTTSK LGAGEGGEAS(-25.9)VS(25.9)PEKT(-63.08)S(-90.05)T(-105.88)T(-115)S(-127.87)K 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.150085449219 3 691.650968 2071.93107 32638.4767234041 2.0854 0.0014424 331330 229.16 331330 229.16 921.148496096665 52.437 0.5133 52.437 52.183 52.697 0 84 17 6 0.993834331625961 0.00497629876993924 0.0805609683074089 5.6956E-33 1 12170 323.88 278.54 7 97874000 25257 34124 25317 35573 26726 23831 30137 30828 36917 7869.4 23900 32244 25513 36248 27093 24514 30699 30889 36139 8123.5 1 1 1 1 1 1 1 1 1 1 2680 953 2358 2491 2993 2993 1596 LGAGGGSPEK 10 Phospho (STY) _LGAGGGS(ph)PEK_ LGAGGGS(1)PEK LGAGGGS(147.39)PEK 0 0 1 0 Q9UNE7 Q9UNE7 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.874633789063 2 476.710415 951.406276 37077.1774249493 2.9448 0.0014038 480720 229.16 480720 229.16 705.873186043372 46.083 0.58682 46.083 45.819 46.406 0 61 19 4 0.984414028843778 0.00476991578215992 0.220860794182326 3.086E-06 1 10627 147.39 89.02 1 66694000 49485 84628 48642 87993 31534 47495 33929 57314 94783 9468.6 46822 79965 48823 89493 33102 49555 36088 57395 90941 10242 1 1 1 1 1 1 1 1 1 1 2681 2203 2359 2492 2994 2994 3990 LGAGGGSPEKSPSAQELK 18 Phospho (STY) _LGAGGGS(ph)PEKSPSAQELK_ LGAGGGS(0.998)PEKS(0.002)PSAQELK LGAGGGS(27.3)PEKS(-27.3)PS(-39.44)AQELK 0 0 1 1 Q9UNE7 Q9UNE7 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 827.785583496094 3 598.287413 1791.84041 33774.9059424734 1.9339 0.001157 383030 229.16 383030 229.16 827.784759374398 59.034 0.67061 59.034 58.756 59.427 0 92 22 5 0.971127749994174 0.00176441491027742 0.0478262310456913 6.8128E-05 1 13899 101.75 76.851 3 322680000 17209 26081 19023 24040 14004 19602 13867 20764 29073 11070 16291 24626 18989 24737 14520 19881 14539 21116 28041 10904 1 1 1 1 1 1 1 1 1 1 2682 2203 2360 2493 2995 2995 3990 LGASNSPGQPNSVK 14 Phospho (STY) _LGASNS(ph)PGQPNSVK_ LGAS(0.008)NS(0.992)PGQPNSVK LGAS(-21.06)NS(21.06)PGQPNS(-92.45)VK 0 0 1 0 P49756 P49756 P49756 RBM25 RNA-binding protein 25 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 947.497009277344 2 718.332488 1434.65042 32278.0381026139 1.75 0.0012571 319020 229.16 319020 229.16 947.495345765251 50.004 0.55523 50.004 49.718 50.274 0 65 18 5 0.980074154696105 0.00275108118877917 0.124032157697609 1.164E-22 1 11577 265.6 202.39 3 135310000 33071 41298 32247 38071 29316 31293 31745 33847 40952 4296.9 31291 38995 32487 39178 29966 31709 32449 33982 40017 4829.4 1 1 1 1 1 1 1 1 1 1 2683 650 2361 2494 2996 2996 1076;1077 LGASNSPGQPNSVKR 15 Phospho (STY) _LGASNSPGQPNS(ph)VKR_ LGAS(0.01)NS(0.031)PGQPNS(0.959)VKR LGAS(-19.74)NS(-14.87)PGQPNS(14.87)VKR 0 0 1 1 P49756 P49756 P49756 RBM25 RNA-binding protein 25 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.368286132813 3 531.257788 1590.75153 37521.0583418902 1.2497 0.00066393 287570 152.78 287570 152.78 684.033122144387 40.562 0.42119 40.562 40.293 40.714 0 36 13 4 0.933082178791526 0.00295203142943628 0.0221431103482717 0.035936 1 9202 52.72 23.764 3 81154000 15019 17500 17247 14790 23958 17093 26903 19550 16927 5130.2 14220 16516 17326 15388 23949 17071 26971 19670 17125 5283.2 1 1 1 1 1 1 1 1 1 1 2684 650 2362 2495 2997 2997 1076;1077 LGEHNIDVLEGNEQFINAAK 20 Unmodified _LGEHNIDVLEGNEQFINAAK_ 0 0 0 0 CON__P00761 CON__P00761 CON__P00761 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.81494140625 3 737.706197 2210.09676 32741.3448091373 1.5847 0.0011691 207090 152.77 207100 152.78 890.814147870783 84.324 0.67936 84.324 83.927 84.607 0 56 23 4 0.972301094359988 0.0047350911607663 0.0311698129529725 7.1263E-23 1 19704 256.11 235.3 1 25268000 11940 12961 13162 12596 10250 14392 11831 13750 14862 15776 11303 12242 13150 12984 10599 14367 12050 14292 14536 15174 1 1 1 1 1 1 1 1 1 1 + 2685 21 2363 2496 2998 2998 LGFSLTPSK 9 Phospho (STY) _LGFSLT(ph)PSK_ LGFS(0.066)LT(0.934)PS(0.001)K LGFS(-11.53)LT(11.53)PS(-30.75)K 0 0 1 0 P38432 P38432 P38432 COIL Coilin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.420043945313 2 515.254458 1028.49436 36445.7765344233 1.6721 0.00086154 444760 229.16 444760 229.16 744.41797588954 88.231 0.91586 88.231 87.848 88.763 0 90 31 4 0.844178618381857 0.0037729459707901 0.14094479440073 0.00036978 1 20547 122.86 76.922 3 69495000 27531 33142 29839 30657 13687 25148 14691 25860 33606 18583 26060 31294 29717 31541 14876 25497 15424 26472 32357 18097 1 1 1 1 1 1 1 1 1 1 2686 563 2364 2497 2999 2999 4456 LGGAVPFAPPEVSPEQAK 18 Phospho (STY) _LGGAVPFAPPEVS(ph)PEQAK_ LGGAVPFAPPEVS(1)PEQAK LGGAVPFAPPEVS(132.6)PEQAK 0 0 1 0 Q6ZSR9 Q6ZSR9 Q6ZSR9 Uncharacterized protein FLJ45252 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.0830078125 3 625.308037 1872.90228 35588.1462593652 1.4779 0.00092415 244320 152.78 244320 152.78 778.418511793184 91.757 0.6608 91.757 91.481 92.142 0 76 22 4 0.982647193041239 0.00262568053991987 0.0511600802434893 1.1564E-05 1 21350 132.6 120.62 1 31624000 9374 5462.6 10092 4695.1 4336.8 8749.8 5024.8 6378.9 4795.4 16266 8872.9 5156 10051 4932.8 4750.3 8590.3 5075.5 6980.4 4741.4 15464 1 1 1 1 1 1 1 1 1 1 2687 1298 2365 2498 3000 3000 2317 LGGFGSKR 8 Phospho (STY) _LGGFGS(ph)KR_ LGGFGS(1)KR LGGFGS(87.81)KR 0 0 1 1 Q14839 Q14839 Q14839 CHD4 Chromodomain-helicase-DNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 453.922637939453 3 301.147899 900.421867 45681.1472882763 0.6872 0.00020695 507310 152.77 507310 152.77 453.923062903332 56.706 1.3541 56.706 56.067 57.422 0 170 45 5 0.912974902856657 0.00304647413660336 0.0624971639998615 0.0062553 1 13190 87.806 50.331 1 82854000 11485 32624 11248 30943 36243 12682 39072 27525 30925 1153 10867 30810 11651 31581 35336 13716 39413 27069 30859 1722.7 1 1 1 1 1 1 1 1 1 1 2688 1030 2366 2499 3001 3001 1769 LGGLRPESPESLTSVSR 17 Phospho (STY) _LGGLRPES(ph)PESLTSVSR_ LGGLRPES(0.997)PES(0.003)LTSVSR LGGLRPES(24.78)PES(-24.78)LT(-39.73)S(-54.51)VS(-88.04)R 0 0 1 1 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1047.54541015625 2 932.961855 1863.90916 31013.0933536834 1.1324 0.0010565 122820 114.58 122820 114.58 1047.54386750415 70.617 0.84067 70.617 70.276 71.117 0 84 28 5 0.962237902168431 0.00160517936282973 0.00768304129846441 4.6121E-31 1 16542 294.93 252.45 5 84427000 11530 12246 10391 12525 7806.9 9561.7 8856.2 11732 14921 19650 10906 11570 10499 12795 8095.6 9780.6 9130.5 12276 14466 18774 1 1 1 1 1 1 1 1 1 1 2689 1944 2367 2500 3002 3002 3529 LGGPEGPGSPLLAT 14 Phospho (STY) _LGGPEGPGS(ph)PLLAT_ LGGPEGPGS(1)PLLAT LGGPEGPGS(62.5)PLLAT(-62.5) 0 0 1 0 Q9C086 Q9C086 Q9C086 INO80B INO80 complex subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.907043457031 2 673.3236 1344.63265 35300.3591658672 1.4058 0.00094658 170170 114.58 170170 114.58 787.905278845086 85.929 0.83054 85.929 85.505 86.335 0 89 28 4 0.561728227529939 0.00103139063949643 0.0196960644787981 0.00013645 1 20016 122.55 103.93 2 26002000 13467 10822 13402 11226 11988 13310 12154 12053 10649 15896 12743 10226 13482 11536 12250 13262 12322 12618 10571 15247 1 1 1 1 1 1 1 1 1 1 2690 1883 2368 2501 3003 3003 3426 LGGTIDDCELVEGLVLTQK 19 Unmodified _LGGTIDDCELVEGLVLTQK_ 0 0 0 0 P50991 P50991 P50991 CCT4 T-complex protein 1 subunit delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.467895507813 3 687.357517 2059.05072 35251.0704655029 2.2282 0.0015316 222260 152.77 222270 152.78 840.46606239721 100.36 0.13893 100.36 100.28 100.42 0 12 4 4 0.688919132232475 0.00239749456038209 0.0433067218253273 3.9625E-05 1 23458 119.8 93.652 1 28578000 10181 14694 13644 13893 12420 13562 11648 14003 16273 45866 9646.5 13877 13523 14309 12669 13701 12020 15411 15860 43513 1 1 1 1 1 1 1 1 1 1 2691 672 2369 2502 3004 3004 LGHPEALSAGTGSPQPPSFTYAQQR 25 Phospho (STY) _LGHPEALSAGTGS(ph)PQPPSFTYAQQR_ LGHPEALSAGT(0.039)GS(0.961)PQPPSFTYAQQR LGHPEALS(-53.65)AGT(-13.93)GS(13.93)PQPPS(-109.8)FT(-119.32)Y(-141.16)AQQR 0 0 1 0 Q15942 Q15942 Q15942 ZYX Zyxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 969.808471679688 3 893.085058 2676.23334 32108.9863028833 1.4827 0.0013242 85533 76.389 85535 76.39 969.80780527822 68.715 0.99764 68.715 68.035 69.033 0 107 33 5 0.992405981314468 0.00279544610787186 0.0255116858997389 2.8272E-12 2 16089 198.99 178.73 6 32052000 8160.3 9748.2 8465.9 8218.7 8489.1 8518.2 9682.7 10973 9968.4 26615 7722.8 9200.1 8509.7 8536.9 8630.6 8605.7 9806.7 11713 9823.7 25315 2 2 2 2 2 2 2 2 2 2 2692 1099 2370 2503 3005;3006 3006 1907 LGHVVMGNNAVSPYQQVIEK 20 Oxidation (M),Phospho (STY) _LGHVVM(ox)GNNAVS(ph)PYQQVIEK_ LGHVVM(1)GNNAVSPYQQVIEK LGHVVMGNNAVS(1)PYQQVIEK LGHVVM(163.92)GNNAVSPYQQVIEK LGHVVMGNNAVS(76.5)PY(-76.5)QQVIEK 0 1 1 0 P60228 P60228 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 913.47998046875 3 760.367849 2278.08172 32553.5921531825 1.6712 0.0012707 200920 152.78 200930 152.78 913.811172018928 73.611 0.40046 73.611 73.384 73.785 0 44 13 5 0.964816640870568 0.00213166325532012 0.0292186326039517 5.5093E-08 1 17286 163.92 125.64 2 18818000 7151.3 12697 7691.4 11566 5845.3 8168.6 7831.5 8907.9 11989 21515 6769 11988 7694.9 11890 6072.8 8389.2 7990.2 9555 11653 20465 1 1 1 1 1 1 1 1 1 1 2693 739 2371 2504 3007 3007 96 1224 LGHVVMGNNAVSPYQQVIEK 20 Phospho (STY) _LGHVVMGNNAVS(ph)PYQQVIEK_ LGHVVMGNNAVS(1)PYQQVIEK LGHVVMGNNAVS(91.89)PY(-91.89)QQVIEK 0 0 1 0 P60228 P60228 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 907.813110351563 3 755.036211 2262.0868 33196.3485379676 1.643 0.0012405 202340 152.78 202340 152.78 908.146319241845 80.972 0.46869 80.972 80.695 81.164 1.4211E-14 57 15 5 0.870728678792072 0.00221561186640569 0.0271002821298218 2.565E-16 1 18933 228.29 183.24 2 22734000 6298.1 9784.3 6294 9986 4697.5 6251.6 6527.2 6968.4 10260 22515 5959.6 9244 6321.9 10181 4890.7 6484.4 6658.4 7640.5 9965.1 21362 1 1 1 1 1 1 1 1 1 1 2694 739 2371 2505 3008 3008 1224 LGHYATQLQK 10 Phospho (STY) _LGHY(ph)ATQLQK_ LGHY(1)ATQLQK LGHY(49.01)AT(-49.01)QLQK 0 0 1 0 P42229 P42229 P42229 STAT5A Signal transducer and activator of transcription 5A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 566.311706542969 3 413.535822 1237.58564 41916.0628367583 1.9014 0.00078631 369440 152.77 369440 152.78 566.310619275545 58.435 0.67473 58.435 58.111 58.786 0 33 22 2 0.893022962466267 0.00188300973992395 0.062399005250414 7.1729E-08 1 13694 174.98 102.34 2 12897000 8202.5 18405 7929.1 16909 7178.6 8124.4 7035.2 10488 17351 3469.7 7760.6 17378 7990.4 17312 7336.9 8571.7 7450.6 10534 16683 3509.9 1 1 1 1 1 1 1 1 1 1 2695 583 2372 2506 3009 3009 4876 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR 34 Oxidation (M) _LGLGIDEDDPTADDTSAAVTEEM(ox)PPLEGDDDTSR_ LGLGIDEDDPTADDTSAAVTEEM(1)PPLEGDDDTSR LGLGIDEDDPTADDTSAAVTEEM(218.16)PPLEGDDDTSR 0 1 0 0 P07900 P07900 P07900 HSP90AA1 Heat shock protein HSP 90-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1265.57409667969 3 1188.5161 3562.52646 28039.4752320916 1.4687 0.0017456 64271 76.387 64272 76.389 1265.23793299746 83.189 0.73181 83.189 82.823 83.555 0 109 24 7 0.977142188045948 0.00415926724894975 0.0193791875996112 4.6619E-18 2 19431 218.16 204.82 1 41510000 2955.1 2804.7 3072.7 2923.9 1939.5 3248.4 1918.4 4291.4 3104.1 22054 2796.7 2650.1 3073.4 3000.1 2036 3296.1 1986.3 4928.7 3012.6 20865 2 2 2 2 2 2 2 2 2 2 2696 323 2373 2507 3010;3011 3011 35 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR 34 Unmodified _LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR_ 0 0 0 0 P07900 P07900 P07900 HSP90AA1 Heat shock protein HSP 90-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1260.24243164063 3 1183.18446 3546.53154 27965.6099836768 1.7463 0.0020662 64561 76.388 64563 76.39 1259.90682410716 93.068 2.6875 93.068 92.198 94.885 0 261 92 8 0.995001507131746 0.0378035392414459 0.407739539975088 1.4236E-18 3 21671 242.45 226.05 1 260440000 13481 11531 14082 14265 6351 6634.7 10419 13467 18946 131970 12758 10908 14059 14358 6967.1 7325 10644 17220 18333 124580 3 3 3 3 3 3 3 3 3 3 2697 323 2373 2508 3012;3013;3014 3012 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 39 Oxidation (M) _LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRM(ox)EEVD_ LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRM(1)EEVD LGLGIDEDDPTADDTSAAVTEEM(-58.03)PPLEGDDDTSRM(58.03)EEVD 0 1 0 1 P07900 P07900 P07900 HSP90AA1 Heat shock protein HSP 90-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.23596191406 4 1042.44415 4165.74748 29760.763569301 1.7696 0.0018447 54957 57.29 54959 57.291 1099.9854538085 93.965 0.58021 93.965 93.762 94.343 0 55 19 5 0.92632616247118 0.00351310321651276 0.0626290717613384 1.1603E-05 2 21888 119.58 113.33 2 17258000 2519.6 3141 2210.1 3543.8 3901.4 2165 3704.3 4090.7 4784.8 40285 2383 2969.5 2263.5 3592 3857.5 2331.7 3809.7 5242.5 4675.3 38028 2 2 2 2 2 2 2 2 2 2 2698 323 2374 2509 3015;3016 3015 35;36 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 39 Unmodified _LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD_ 0 0 0 1 P07900 P07900 P07900 HSP90AA1 Heat shock protein HSP 90-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1460.98425292969 3 1384.25813 4149.75257 26234.7747089339 1.4789 0.0020471 55183 76.388 55185 76.39 1461.31468631424 97.691 0.69238 97.691 97.357 98.05 -1.4211E-14 84 23 6 0.948038437447677 0.00241107322156927 0.0643738801624511 2.2373E-08 1 22647 153.81 149.89 1 23403000 387.98 351.04 957.25 463.54 446.2 511.49 177.49 694.08 1023.1 9157.4 369.26 332.26 924.4 469.85 479.98 530.09 216.74 965.07 973.65 8638.8 1 1 1 1 1 1 1 1 1 1 2699 323 2374 2510 3017 3017 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 39 Unmodified _LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD_ 0 0 0 1 P07900 P07900 P07900 HSP90AA1 Heat shock protein HSP 90-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1095.98815917969 4 1038.44542 4149.75257 29979.9346202902 1.5408 0.0016001 55170 57.291 55171 57.292 1096.48894943514 97.725 0.69296 97.725 97.329 98.021 -1.4211E-14 101 23 6 0.97324822591703 0.00369477490053281 0.0837543498782472 8.3821E-09 1 22654 154.43 150.48 1 35025000 1648.5 1687.8 1828.3 2326.6 1460.1 1340.2 1392.6 2583.4 2450.5 15779 1560.6 1598 1826 2334 1503.5 1432.7 1449.8 3018.7 2373 14918 1 1 1 1 1 1 1 1 1 1 2700 323 2374 2510 3018 3018 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR 34 Unmodified _LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR_ 0 0 0 0 P08238 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1254.94689941406 3 1178.21983 3531.63766 28166.4081450998 1.7587 0.0020722 64833 76.387 64834 76.389 1255.27565929002 98.495 1.1287 98.495 98.079 99.207 0 228 38 8 0.975193816792665 0.00630616902330661 0.206471714926844 3.8453E-09 1 22790 173.95 162.64 1 347870000 2443.3 2865.2 2111.2 2149.3 2139.6 2394.1 1945.9 2985.1 2190.2 28595 2310.7 2702.6 2144.9 2254.4 2167.1 2450.1 1996.8 3833 2150.7 26995 1 1 1 1 1 1 1 1 1 1 2701 331 2375 2511 3019 3019 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR 34 Unmodified _LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR_ 0 0 0 0 P08238 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.462768554688 4 883.916692 3531.63766 32007.7732639456 1.8424 0.0016286 64815 57.291 64817 57.292 941.458574355189 98.487 1.1295 98.487 98.021 99.151 0 246 38 8 0.944321899041966 0.00463851131432799 0.0960193569231357 4.5034E-08 1 22974 145.26 136.42 1 477160000 4485.6 6042.2 6313.7 5778.9 6430.8 5443.1 7175.9 8710.4 9667.2 66750 4251.4 5706.3 6255.3 5944.3 6532 5637.5 7336.9 10622 9432.9 63055 1 1 1 1 1 1 1 1 1 1 2702 331 2375 2511 3020 3020 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR 34 Unmodified _LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR_ 0 0 0 0 P08238 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.457458496094 4 883.916692 3531.63766 32078.047575365 1.38 0.0012198 64815 57.291 64816 57.292 941.709708980596 99.268 0.3152 99.268 99.151 99.466 1.4211E-14 26 10 3 0.961971200487154 0.00147830651411131 0.0379448530171577 2.9604E-05 1 23027 107.29 95.983 1 17620000 4858.5 5213.7 5796.7 5457.6 6066.8 4795.6 5084.5 8235.6 6313.9 79070 4600.9 4926.6 5784.5 5578.1 6127.9 5028.5 5256.4 10510 6177.7 74645 1 1 1 1 1 1 1 1 1 1 2703 331 2375 2511 3021 3021 LGLPLLTDCAQPSRPHGSPSR 21 Phospho (STY) _LGLPLLTDCAQPS(ph)RPHGSPSR_ LGLPLLTDCAQPS(0.505)RPHGS(0.399)PS(0.096)R LGLPLLT(-40.27)DCAQPS(1.02)RPHGS(-1.02)PS(-7.2)R 0 0 1 1 P55199 P55199 P55199 ELL RNA polymerase II elongation factor ELL MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.334167480469 4 585.538605 2338.12531 38904.3471252055 1.5465 0.00090553 97843 57.291 97844 57.292 643.079939446952 80.863 1.0504 80.863 80.313 81.363 0 137 35 5 0.773732981760402 0.00625859941529974 0.102190546484521 0.0094009 1 18880 81.477 60.019 4 63367000 2227.8 3104 1947.1 2797.6 2399.7 3113.8 2802.8 3412.7 3953.4 5954.6 2107 2930.5 1983.1 2896.3 2415.3 3122 2865.1 3591.1 3852 5685.9 1 1 1 1 1 1 1 1 1 1 2704 721 2376 2512 3022 3022 1203 LGMLSPEGTCK 11 Oxidation (M),Phospho (STY) _LGM(ox)LS(ph)PEGTCK_ LGM(1)LSPEGTCK LGMLS(1)PEGTCK LGM(81.28)LSPEGTCK LGMLS(49.62)PEGT(-49.62)CK 0 1 1 0 P49327 P49327 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.292053222656 3 430.181951 1287.52402 42316.2998904618 1.9911 0.00085653 355140 152.78 355140 152.78 582.957152909316 63.705 0.45629 63.705 63.491 63.948 7.1054E-15 31 15 3 0.969486708173495 0.000972534304789696 0.00973229196430912 0.0067835 1 14964 81.278 54.68 2 6657500 5278.3 5725.3 4490.9 5511.8 5167.7 5200.2 5325.2 4571.3 6304.2 2215.4 4991.7 5407.3 4576 5667.4 5207.4 5222.6 5439.9 4676.4 6178.8 2191.9 1 1 1 1 1 1 1 1 1 1 2705 636 2377 2513 3023 3023 81 1053 LGMLSPEGTCK 11 Phospho (STY) _LGMLS(ph)PEGTCK_ LGMLS(0.806)PEGT(0.194)CK LGMLS(6.19)PEGT(-6.19)CK 0 0 1 0 P49327 P49327 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.936096191406 2 636.771832 1271.52911 33318.6342158153 2.2367 0.0014243 359880 229.16 359880 229.16 865.932782559024 77.642 0.95288 77.642 77.281 78.234 1.4211E-14 69 30 4 0.977723732328094 0.00186488991625557 0.0967498399753367 0.0024384 1 18178 97.276 75.044 2 16039000 15866 21433 16044 19612 13575 15669 13985 19490 22667 20657 15014 20237 16116 20185 13935 15968 14454 20024 21997 19902 1 1 1 1 1 1 1 1 1 1 2706 636 2377 2514 3024 3024 1053 LGPGKGSR 8 Phospho (STY) _LGPGKGS(ph)R_ LGPGKGS(1)R LGPGKGS(74.94)R 0 0 1 1 Q00722 Q00722 Q00722 PLCB2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 437.251861572266 3 284.476015 850.406217 46981.1204744533 -0.1258 -3.5786E-05 537040 152.78 537040 152.78 437.251454914355 37.407 1.0502 37.407 37.073 38.123 0 68 39 3 0.946653386151283 0.00247401719566447 0.00627057647643539 0.0095287 1 8430 74.944 49.385 1 145960000 26070 13091 27638 12049 149320 24414 148360 65696 10690 1639.8 24675 12360 29228 12634 144210 24440 147300 64347 16387 3064.5 1 1 1 1 1 1 1 1 1 1 2707 828 2378 2515 3025 3025 1327 LGSAEQSSPDLSFLVVK 17 Phospho (STY) _LGS(ph)AEQSSPDLSFLVVK_ LGS(1)AEQSSPDLSFLVVK LGS(38.29)AEQS(-39.51)S(-38.29)PDLS(-88.97)FLVVK 0 0 1 0 Q96LW4 Q96LW4 Q96LW4 PRIMPOL DNA-directed primase/polymerase protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.416564941406 3 619.639563 1855.89686 36292.8746593917 1.7631 0.0010925 246560 152.78 246560 152.78 772.415459108473 100.94 0.20164 100.94 100.84 101.04 0 18 6 4 0.976117277988202 0.00299981230759758 0.135278934952114 3.5338E-05 1 23672 125.45 97.798 4 81265000 14917 10192 14475 14216 16442 11638 18211 16981 12919 36135 14113 9650.8 14628 14309 16590 11915 18308 17915 12972 34418 1 1 1 1 1 1 1 1 1 1 2708 1712 2379 2516 3026 3026 3156 LGSALLIR 8 Phospho (STY) _LGS(ph)ALLIR_ LGS(1)ALLIR LGS(82.64)ALLIR 0 0 1 0 Q14993 Q14993 Q14993 COL19A1 Collagen alpha-1(XIX) chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 576.341430664063 2 461.75971 921.504868 41804.4246773658 1.1393 0.00052607 248140 114.58 248140 114.58 576.341065347503 86.462 0.54477 86.462 86.159 86.704 0 37 18 3 0.808600711152595 0.00141959628881397 0.0474793849409438 0.011867 1 20154 82.645 25.729 1 14693000 16812 4067.2 16606 3719.8 6805.4 14163 6497.1 8434.3 4289.6 7324.7 15907 3840.2 16613 4008.4 7478.4 13672 6567.9 8902.9 4326.2 7092.3 1 1 1 1 1 1 1 1 1 1 2709 1037 2380 2517 3027 3027 1794 LGSFGSITR 9 Phospho (STY) _LGSFGS(ph)ITR_ LGS(0.074)FGS(0.918)IT(0.008)R LGS(-10.95)FGS(10.95)IT(-20.71)R 0 0 1 0 Q14315 Q14315 Q14315 FLNC Filamin-C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 623.823852539063 2 509.241882 1016.46921 39772.5104410127 1.7065 0.00086905 225000 114.58 225000 114.58 623.823287957766 75.457 0.71366 75.457 75.09 75.803 -1.4211E-14 53 24 3 0.9909375086185 0.00266444130372729 0.221763843397043 0.039977 1 17707 54.259 30.94 3 11904000 6084.6 18948 7516 19298 6582.7 5000.2 5226.5 11644 20665 4285.8 5763 17902 7471.9 19564 6730.7 5741.5 5808 11552 19735 4305 1 1 1 1 1 1 1 1 1 1 2710 1007 2381 2518 3028 3028 1709;1710 LGSFGSITR 9 Phospho (STY) _LGS(ph)FGSITR_ LGS(1)FGSITR LGS(35.88)FGS(-35.88)IT(-68.76)R 0 0 1 0 Q14315 Q14315 Q14315 FLNC Filamin-C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 623.824462890625 2 509.241882 1016.46921 39817.0748539906 1.7019 0.00086668 225000 114.58 225010 114.58 623.823507578447 78.015 1.1834 78.015 77.368 78.551 0 124 40 5 0.932422696002037 0.00767782079353832 0.0871780052426347 3.303E-06 1 18251 162.21 121.21 3 162500000 11451 60007 10633 60500 4230.7 11422 3231.6 26795 63664 3792.9 10833 56690 10673 61301 4714.2 13839 4992.4 26396 60254 4191.6 1 1 1 1 1 1 1 1 1 1 2711 1007 2381 2518 3029 3029 1709;1710 LGSLSAR 7 Phospho (STY) _LGS(ph)LSAR_ LGS(0.924)LS(0.076)AR LGS(10.82)LS(-10.82)AR 0 0 1 0 Q5SW79;Q00G26 Q5SW79 Q5SW79 CEP170;PLIN5 Centrosomal protein of 170 kDa;Perilipin-5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 506.773406982422 2 392.191661 782.368768 44280.0850638581 1.2955 0.00050809 292160 114.58 292160 114.58 506.772950508335 53.982 0.64348 53.982 53.656 54.299 0 56 21 4 0.96423334990646 0.00405294339545847 0.0715789789095913 0.0013582 1 12562 117.76 26.244 2 50822000 46664 15084 42301 14218 15981 41279 17834 24915 15166 1841.8 44140 14244 42527 15086 17795 39966 17992 25681 15077 2310.9 1 1 1 1 1 1 1 1 1 1 2712 1180 2382 2519 3030 3030 2044 LGSPDYGNSALLSLPGYRPTTR 22 Phospho (STY) _LGS(ph)PDYGNSALLSLPGYRPTTR_ LGS(1)PDYGNSALLSLPGYRPTTR LGS(38.3)PDY(-56.13)GNS(-38.3)ALLS(-86.49)LPGY(-113.86)RPT(-108.8)T(-108.8)R 0 0 1 1 Q14980 Q14980 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.456604003906 3 805.728323 2414.16314 34206.7261102064 1.5067 0.001214 94807 76.389 94809 76.39 882.451614227721 89.244 0.5806 89.244 88.967 89.548 1.4211E-14 58 19 4 0.810588248405338 0.00437411816347308 0.0910838709121071 1.9338E-05 1 20801 128.18 104.31 7 21036000 5939.7 9029.8 6376.2 7628.7 8500.8 6812.5 9965.3 8847.7 7480.8 24906 5622.1 8522.2 6424.1 7905.3 8519.5 6937.4 10005 9546.5 7486.7 23657 1 1 1 1 1 1 1 1 1 1 2713 1036 2383 2520 3031 3031 1789 LGSPKPER 8 Phospho (STY) _LGS(ph)PKPER_ LGS(1)PKPER LGS(45.6)PKPER 0 0 1 1 Q86VM9 Q86VM9 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 711.398071289063 2 482.236599 962.458646 36919.8076619759 1.8794 0.00090633 475210 229.16 475210 229.16 711.399690884669 39.557 0.60668 39.557 39.282 39.889 -7.1054E-15 75 20 5 0.949889617975574 0.00242121397210546 0.0347625834677009 0.054605 1 8945 45.603 23.455 1 248580000 30602 38910 34790 38058 35053 31807 36642 37605 40714 7206.2 28973 36752 34797 39029 35583 32247 37333 37713 40000 7655.8 1 1 1 1 1 1 1 1 1 1 2714 1380 2384 2521 3032 3032 2499 LGSPLAVDEALR 12 Phospho (STY) _LGS(ph)PLAVDEALR_ LGS(1)PLAVDEALR LGS(211.77)PLAVDEALR 0 0 1 0 Q7RTP6 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.414306640625 2 660.831592 1319.64863 35878.7627392044 1.7187 0.0011357 173390 114.58 173390 114.58 775.412474613874 86.928 0.43866 86.928 86.732 87.171 1.4211E-14 33 14 3 0.779158731709767 0.00137400098731511 0.0304617228850485 5.6522E-12 1 20286 211.77 166.64 1 9981000 11375 13526 11417 15160 12447 12145 13685 12602 14537 33155 10763 12787 11509 15417 12589 12376 13894 13622 14308 31511 1 1 1 1 1 1 1 1 1 1 2715 1324 2385 2522 3033 3033 2371 LGSPLAVDEALRR 13 Phospho (STY) _LGS(ph)PLAVDEALRR_ LGS(1)PLAVDEALRR LGS(121.45)PLAVDEALRR 0 0 1 1 Q7RTP6 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 569.312744140625 3 492.923857 1475.74974 42124.3847982183 1.8237 0.00089893 154970 76.387 154970 76.388 569.311570216138 77.221 0.42853 77.221 76.969 77.398 0 37 14 3 0.534806378517071 0.00214280831965099 0.0278860044719597 9.1648E-05 1 18105 121.45 93.479 1 9800400 4368.3 6375.9 4756.2 6690.6 4328.3 4133.9 5083.7 5149.6 5830.4 2797.1 4135 6024.9 4763.1 6809.4 4429 4275.7 5158.9 5210.4 5721.2 2753 1 1 1 1 1 1 1 1 1 1 2716 1324 2386 2523 3034 3034 2371 LGSPSGK 7 Phospho (STY) _LGS(ph)PSGK_ LGS(0.922)PS(0.078)GK LGS(10.7)PS(-10.7)GK 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.328125 2 363.165112 724.31567 41050.8408439854 1.1525 0.00041854 631020 229.16 631020 229.16 592.328305683882 45.61 0.67086 45.61 45.379 46.05 0 60 22 5 0.995064786991589 0.00270917792058133 0.0116976118007572 0.001792 1 10488 110.79 17.627 2 143870000 92978 84245 87882 81836 7618.2 75336 10418 57525 86515 2754.6 87962 79570 87808 84069 12581 75585 12554 58475 82136 3925.2 1 1 1 1 1 1 1 1 1 1 2717 896 2387 2524 3035 3035 1473 LGSQPIRASNPDLR 14 Phospho (STY) _LGSQPIRAS(ph)NPDLR_ LGSQPIRAS(1)NPDLR LGS(-51.98)QPIRAS(51.98)NPDLR 0 0 1 1 Q9UKE5 Q9UKE5 Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 611.658325195313 3 535.269916 1602.78792 40670.4908079113 0.67169 0.00035954 142710 76.388 142710 76.388 611.991840753179 54.486 0.75064 54.486 54.06 54.81 -7.1054E-15 72 25 4 0.953164301556772 0.0033222050400713 0.0157287221067627 0.00011603 1 12700 115.42 73.388 2 97423000 9219.9 33193 10945 31317 30108 10716 26407 28267 36462 3653.6 8730.8 31346 11149 31939 29379 11888 27333 27784 35551 4094.5 1 1 1 1 1 1 1 1 1 1 2718 2170 2388 2525 3036 3036 3910 LGSSGLGSASSIQAAVR 17 Phospho (STY) _LGSSGLGS(ph)ASSIQAAVR_ LGS(0.399)S(0.106)GLGS(0.42)AS(0.003)S(0.074)IQAAVR LGS(-0.22)S(-5.98)GLGS(0.22)AS(-22.13)S(-7.56)IQAAVR 0 0 1 0 Q7Z6Z7 Q7Z6Z7 Q7Z6Z7 HUWE1 E3 ubiquitin-protein ligase HUWE1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 935.485229492188 2 820.903809 1639.79306 32991.6027545541 2.2833 0.0018744 139580 114.58 139580 114.58 935.485570823758 74.336 0.52854 74.336 74.07 74.598 0 56 17 5 0.55570163644946 0.00227942394018309 0.129573196655093 8.8964E-11 1 17427 197 167.37 5 48606000 12494 13872 11277 13379 19320 11360 21263 17722 14842 43661 11818 13102 11527 13734 19153 11639 21374 18845 14917 41522 1 1 1 1 1 1 1 1 1 1 2719 1356 2389 2526 3037 3037 2467 LGSTAPQVLSTSSPAQQAENEAK 23 Phospho (STY) _LGSTAPQVLSTSS(ph)PAQQAENEAK_ LGSTAPQVLSTS(0.01)S(0.99)PAQQAENEAK LGS(-84.15)T(-84.68)APQVLS(-46.13)T(-37.61)S(-20.06)S(20.06)PAQQAENEAK 0 0 1 0 Q9UNZ2 Q9UNZ2 Q9UNZ2 NSFL1C NSFL1 cofactor p47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 951.82275390625 3 798.710998 2393.11116 31896.3233864253 1.7366 0.001387 191280 152.78 191280 152.78 951.820463966376 70.862 0.49006 70.862 70.627 71.117 1.4211E-14 42 16 4 0.478022617213717 0.00199633326131589 0.0143619968600416 4.841E-06 1 16662 136.3 118.65 6 44790000 9102.5 16794 10962 17498 12962 11578 10476 13305 18681 31864 8620.3 15868 10951 17829 13008 11951 11007 14239 18085 30311 1 1 1 1 1 1 1 1 1 1 2720 2210 2390 2527 3038 3038 3999 LGSTGAK 7 Phospho (STY) _LGS(ph)TGAK_ LGS(0.93)T(0.07)GAK LGS(11.21)T(-11.21)GAK 0 0 1 0 Q01826 Q01826 Q01826 SATB1 DNA-binding protein SATB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 586.328552246094 2 357.165112 712.31567 40831.4887425984 1.049 0.00037467 641620 229.16 641620 229.16 586.327783610073 45.421 0.92527 45.421 45.007 45.933 0 88 29 4 0.997092000152205 0.00354767360077007 0.0752601329863292 0.0017507 1 10407 111.46 18.617 2 532590000 117720 14665 111410 11276 13643 102370 17169 42343 13159 2804 111370 13834 111360 13249 19664 97798 17198 44884 13154 3620.2 1 1 1 1 1 1 1 1 1 1 2721 844 2391 2528 3039 3039 1361 LGSVDSFER 9 Phospho (STY) _LGS(ph)VDSFER_ LGS(0.994)VDS(0.006)FER LGS(22.36)VDS(-22.36)FER 0 0 1 0 O60343 O60343 O60343 TBC1D4 TBC1 domain family member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.817016601563 2 545.234254 1088.45395 38487.6155296111 2.4788 0.0013515 210150 114.58 210150 114.58 659.81501996013 68.114 0.96996 68.114 67.824 68.794 0 85 32 4 0.805885970459409 0.0055292325909446 0.324215826217178 4.9081E-06 1 16000 155.48 84.985 2 36830000 21413 9443.3 20147 8048.5 47364 20678 52284 26483 8747.9 6577.8 20258 8912.8 20702 8552 46486 20248 51792 26537 10478 6806.7 1 1 1 1 1 1 1 1 1 1 2722 145 2392 2529 3040 3040 249 LGSYSGPTSVSR 12 Phospho (STY) _LGS(ph)YSGPTSVSR_ LGS(0.918)YS(0.082)GPTSVSR LGS(10.5)Y(-83.13)S(-10.5)GPT(-55.02)S(-78.99)VS(-118.18)R 0 0 1 0 Q9BZ23 Q9BZ23 Q9BZ23 PANK2 Pantothenate kinase 2, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.374877929688 2 645.789924 1289.5653 36002.7419187148 1.7178 0.0011093 177430 114.58 177430 114.58 760.373770508443 56.483 0.53606 56.483 56.186 56.722 7.1054E-15 59 17 5 0.780014544284398 0.00366363405777303 0.2053443568351 1.3139E-10 2 13215 176.58 115.42 6 44331000 106310 99920 104050 103280 83655 103990 88923 103910 103120 43620 100590 94410 104660 105850 86185 104280 90652 105550 101150 43478 2 2 2 2 2 2 2 2 2 2 2723 1873 2393 2530 3041;3042 3042 3410 LGVADIIDCVVLTSSPEATETSQQLQLR 28 Phospho (STY) _LGVADIIDCVVLTSS(ph)PEATETSQQLQLR_ LGVADIIDCVVLT(0.001)S(0.042)S(0.956)PEATETSQQLQLR LGVADIIDCVVLT(-28.86)S(-13.52)S(13.52)PEAT(-42.71)ET(-65.67)S(-73.03)QQLQLR 0 0 1 0 Q8NCF5 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1118.90344238281 3 1041.8475 3122.52066 30221.5874052463 0.66205 0.00068976 73320 76.388 73321 76.389 1118.57050769553 101.92 0.37325 101.92 101.82 102.19 0 42 12 5 0.943801655065365 0.0118116335538962 0.229402516921428 3.2247E-12 1 23998 203.75 184.26 6 69376000 5427.5 3974.2 4425.2 6672.3 4381.8 4798.9 4968.4 6434.9 5064.1 101130 5132.1 3769.6 4514.2 6656.1 4457.7 5104.7 5031.8 9438.4 4992.7 95373 1 1 1 1 1 1 1 1 1 1 2724 1497 2394 2531 3043 3043 2750 LGVSVSPSR 9 Phospho (STY) _LGVSVS(ph)PSR_ LGVS(0.002)VS(0.969)PS(0.029)R LGVS(-26.05)VS(15.24)PS(-15.24)R 0 0 1 0 Q86VM9 Q86VM9 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.824035644531 2 491.241882 980.469211 39314.944803109 1.1152 0.00054782 233250 114.58 233250 114.58 605.823937494119 55.265 1.0802 55.265 54.81 55.89 7.1054E-15 113 36 5 0.990412833131698 0.00456304253206534 0.0288625533777843 0.00045671 1 12825 113.99 70.221 3 1046900000 19701 32997 19432 34674 21222 19752 21485 25710 34195 3223 18641 31181 19605 35260 21446 20545 22206 25656 33201 3629.9 1 1 1 1 1 1 1 1 1 1 2725 1380 2395 2532 3044 3044 2497;2498 LGYLVSPPQQIR 12 Phospho (STY) _LGYLVS(ph)PPQQIR_ LGYLVS(1)PPQQIR LGY(-42.02)LVS(42.02)PPQQIR 0 0 1 0 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 560.641235351563 3 484.253315 1449.73812 42020.4242021267 1.0317 0.0004996 157740 76.388 157740 76.388 560.641042979447 85.913 1.1758 85.913 85.243 86.419 0 103 40 3 0.856651128947479 0.000881508112963856 0.00969428971773938 0.030629 1 19975 51.073 32.327 2 8591500 3316.9 2222.4 3610.7 2249.9 3739.3 4440.8 4640.5 3564.9 2845.5 2655.8 3139.8 2099.5 3622.2 2343.6 3798.1 4347.5 4631.2 3689.9 2883.8 2583.3 1 1 1 1 1 1 1 1 1 1 2726 1353 2396 2533 3045 3045 2456 LHGSVPNLSR 10 Phospho (STY) _LHGS(ph)VPNLSR_ LHGS(1)VPNLSR LHGS(57.85)VPNLS(-57.85)R 0 0 1 0 Q9BZF2 Q9BZF2 Q9BZF2 OSBPL7 Oxysterol-binding protein-related protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 463.579650878906 3 387.192167 1158.55467 44775.112340355 -0.44726 -0.00017318 197290 76.388 197290 76.387 463.579563941118 51.646 0.37485 51.646 51.488 51.863 0 18 12 2 0.531316165310329 0.000247174181370063 0.000821082480864637 0.001512 2 12035 97.273 79.2 2 19859000 18512 20586 19998 20175 18054 19366 15736 18126 21297 3518.8 17523 19445 20023 20727 18409 19438 16281 18336 20778 3732.9 2 2 2 2 2 2 2 2 2 2 2727 1878 2397 2534 3046;3047 3046 3417 LHLSPPLGR 9 Phospho (STY) _LHLS(ph)PPLGR_ LHLS(1)PPLGR LHLS(90.65)PPLGR 0 0 1 0 Q6P0Q8 Q6P0Q8 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 433.577789306641 3 357.189986 1068.54813 48348.9450638394 0.3399 0.00012141 213860 76.387 213860 76.388 433.577519009826 71.305 0.86432 71.305 70.944 71.809 0 49 29 3 0.950919326065564 0.000824126173995415 0.0428565363799865 0.0035957 1 16746 90.653 71.382 1 4490100 4790.9 5480.8 4874.8 5554.7 4236.3 4878.1 4020.2 4915.9 5584.8 925.78 4533.7 5177.9 4895.6 5688 4335.1 4922 4145.4 4957.4 5444.2 985.5 1 1 1 1 1 1 1 1 1 1 2728 1253 2398 2535 3048 3048 2221 LHSSNPNLSTLDFGEEK 17 Phospho (STY) _LHSS(ph)NPNLSTLDFGEEK_ LHS(0.188)S(0.812)NPNLSTLDFGEEK LHS(-6.35)S(6.35)NPNLS(-89.25)T(-110.18)LDFGEEK 0 0 1 0 Q9H4L5 Q9H4L5 Q9H4L5 OSBPL3 Oxysterol-binding protein-related protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.7392578125 3 656.629727 1966.86735 33561.2231461926 2.0908 0.0013729 232660 152.77 232670 152.78 809.738554055052 77.759 1.2975 77.759 77.31 78.607 1.4211E-14 184 44 6 0.966382616278558 0.00618646284265496 0.0960832487989523 9.4615E-11 1 18166 184.29 166.13 4 156060000 6848.3 17214 8086.5 18444 6234.2 7979.7 7379.3 11678 19713 10712 6484.9 16268 8051 18695 6463.7 8532.1 7794.3 11893 18928 10357 1 1 1 1 1 1 1 1 1 1 2729 1939 2399 2536 3049 3049 3512 LHVGNISPTCTNK 13 Phospho (STY) _LHVGNIS(ph)PTCTNK_ LHVGNIS(1)PTCTNK LHVGNIS(47.73)PT(-47.73)CT(-91.12)NK 0 0 1 0 Q9BWF3 Q9BWF3 Q9BWF3 RBM4 RNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.345886230469 3 507.569086 1519.68543 37803.4826755506 2.2513 0.0011427 300990 152.78 301000 152.78 660.344531440337 58.453 0.61617 58.453 58.17 58.786 7.1054E-15 91 20 7 0.990361520307774 0.00437184265962271 0.0649422684038286 1.2061E-10 1 13652 182.22 151.18 3 155670000 10922 16109 10430 16771 12900 10374 13085 14132 16180 4741.6 10333 15221 10561 17077 12951 10740 13395 14172 15834 4791.9 1 1 1 1 1 1 1 1 1 1 2730 1850 2400 2537 3050 3050 3384 LHVSTINLQK 10 Phospho (STY) _LHVST(ph)INLQK_ LHVS(0.317)T(0.683)INLQK LHVS(-3.33)T(3.33)INLQK 0 0 1 0 P42345 P42345 P42345 MTOR Serine/threonine-protein kinase mTOR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 564.661560058594 3 411.551472 1231.63259 41644.5968177983 2.0652 0.00084993 371220 152.78 371220 152.78 564.326702347728 74.975 0.60426 74.975 74.682 75.286 0 53 20 4 0.824481492792124 0.00546358966074909 0.0443253616274897 0.0033391 1 17587 95.273 66.509 2 33040000 10934 12349 11114 10450 10840 12027 10992 12362 11313 2686.1 10347 11655 11178 10871 11019 11994 11190 12468 11149 2815.4 1 1 1 1 1 1 1 1 1 1 2731 585 2401 2538 3051 3051 4462 LIAHAGSLTNLAK 13 Phospho (STY) _LIAHAGS(ph)LTNLAK_ LIAHAGS(0.98)LT(0.02)NLAK LIAHAGS(16.96)LT(-16.96)NLAK 0 0 1 0 O00567 O00567 O00567 NOP56 Nucleolar protein 56 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.357177734375 3 463.581432 1387.72247 40557.0651498655 1.6044 0.00074378 329550 152.78 329560 152.78 616.356721414622 80.655 0.55451 80.655 80.404 80.959 0 50 18 4 0.742934160966765 0.00344787693367147 0.0440032195980191 3.1838E-07 1 18874 157.8 109.1 2 16187000 11287 6839.7 12113 7657.9 11053 11200 11158 9573.7 7532 17352 10683 6465.9 12136 7869.9 11277 11081 11254 10189 7585.6 16560 1 1 1 1 1 1 1 1 1 1 2732 54 2402 2539 3052 3052 80 LICCDILDVLDK 12 Unmodified _LICCDILDVLDK_ 0 0 0 0 P62258 P62258 P62258 YWHAE 14-3-3 protein epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.029296875 3 492.919405 1475.73639 39509.4691163441 1.1219 0.00055302 309940 152.77 309940 152.78 646.029008407435 101.6 0.11467 101.6 101.53 101.64 1.4211E-14 11 3 4 0.963805956599052 0.0012455717208579 0.0209645431449745 0.0054557 1 23903 87.001 58.704 1 30981000 7479.2 6578.2 8217.7 7250 6759.2 10151 7434.2 7204.7 8537.8 18378 7080 6218.1 8215.7 7449.6 6956 10043 7565.2 7894.7 8377.4 17472 1 1 1 1 1 1 1 1 1 1 2733 758 2403 2540 3053 3053 LIDRTESLNR 10 Phospho (STY) _LIDRTES(ph)LNR_ LIDRTES(1)LNR LIDRT(-33.95)ES(33.95)LNR 0 0 1 1 P33241 P33241 P33241 LSP1 Lymphocyte-specific protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 509.270202636719 3 432.88177 1295.62348 44363.1476054799 0.5068 0.00021938 176460 76.388 176460 76.388 509.269699480977 50.417 0.49179 50.417 50.183 50.675 0 36 16 3 0.920774710271776 0.00180552018235254 0.041118823906335 0.00012413 1 11715 121.45 81.82 2 16555000 9505.3 4246.3 11548 4013.1 12354 10706 11003 8630.3 5184.1 1692.4 9002.1 4010 11518 4242.3 12465 10409 11105 8788.3 5361.9 1793.3 1 1 1 1 1 1 1 1 1 1 2734 531 2404 2541 3054 3054 861 LIEVDDER 8 Unmodified _LIEVDDER_ 0 0 0 0 P62753 P62753 P62753 RPS6 40S ribosomal protein S6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.33251953125 2 494.750921 987.48729 39447.6171790797 1.3565 0.00067112 231590 114.58 231600 114.58 609.332141214206 59.144 0.60995 59.144 58.846 59.456 0 64 20 4 0.941485144807061 0.00188455959455293 0.083061792319481 0.0012314 1 13821 130.22 82.478 1 63115000 19491 21467 20613 19655 14203 18374 14579 17694 21195 4596.2 18448 20269 20614 20272 14803 18475 15004 17913 20633 4737.4 1 1 1 1 1 1 1 1 1 1 2735 768 2405 2542 3055 3055 LIEVSYLYK 9 2 Phospho (STY) _LIEVS(ph)Y(ph)LYK_ LIEVS(0.983)Y(0.98)LY(0.037)K LIEVS(17.53)Y(16.87)LY(-16.87)K 0 0 2 0 REV__C9JQI7 REV__C9JQI7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.635314941406 3 429.860634 1286.56007 40791.4069711771 1.2275 0.00052765 355400 152.77 355400 152.77 582.968679253909 70.479 0.5781 70.479 70.247 70.825 0 52 19 3 0.899289134752338 0.0024842664254253 0.00601567660049898 0.056604 1 16526 44.203 18.817 3 71569000 18225 37345 19959 33651 8677.2 18215 10251 22455 36479 3079.4 17252 35257 19863 34529 9518.8 19006 11077 22452 34882 3419.3 1 1 1 1 1 1 1 1 1 1 + 2736 2322 2406 2543 3056 3056 4278 LIIESPSNTSSTEPA 15 Phospho (STY) _LIIES(ph)PSNTSSTEPA_ LIIES(0.814)PS(0.186)NTSSTEPA LIIES(6.4)PS(-6.4)NT(-56.11)S(-89.73)S(-89.73)T(-89.73)EPA 0 0 1 0 P38432 P38432 P38432 COIL Coilin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 928.454162597656 2 813.368933 1624.72331 32269.1992321914 2.2497 0.0018298 140870 114.58 140870 114.58 927.95023802909 79.43 1.0919 79.43 78.926 80.018 0 139 37 6 0.987037509118016 0.00224123007252868 0.0754406588010579 1.1094E-06 1 18557 145.29 124.96 6 133340000 8131 11060 7384.8 9323.9 9989.2 7905.9 9170.7 10477 11668 45646 7691.2 10438 7509.3 9656.6 9974.1 8106 9442.7 11785 11406 43223 1 1 1 1 1 1 1 1 1 1 2737 563 2407 2544 3057 3057 913 LIPGPLSPVAR 11 Phospho (STY) _LIPGPLS(ph)PVAR_ LIPGPLS(1)PVAR LIPGPLS(190.68)PVAR 0 0 1 0 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.912902832031 2 600.331031 1198.64751 36935.1089120935 1.9858 0.0011922 190860 114.58 190870 114.58 714.912425225442 88.911 0.95471 88.911 88.479 89.434 1.4211E-14 124 32 6 0.935942984154175 0.0034486672667694 0.216179907136893 3.9564E-10 1 20677 190.68 132.45 1 363320000 11812 12375 12228 12231 7511.2 10444 8706.4 11097 11683 12387 11179 11689 12233 12538 7920.6 10580 8886.5 11479 11401 11920 1 1 1 1 1 1 1 1 1 1 2738 624 2408 2545 3058 3058 1031 LIPITGGNARSPEDQLGK 18 Phospho (STY) _LIPITGGNARS(ph)PEDQLGK_ LIPIT(0.2)GGNARS(0.8)PEDQLGK LIPIT(-6.03)GGNARS(6.03)PEDQLGK 0 0 1 1 Q9UK61 Q9UK61 Q9UK61 FAM208A Protein FAM208A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.438354492188 3 649.329612 1944.96701 35646.9740244776 1.8536 0.0012036 235280 152.78 235280 152.78 802.438979268052 79.672 1.2114 79.672 79.279 80.491 -1.4211E-14 126 41 4 0.839883869471103 0.00629053093983202 0.195381006839155 4.2165E-05 1 18632 115.88 75.527 2 32324000 30395 12054 29222 12840 13391 28654 14335 20239 10943 10349 28757 11392 29300 13390 14534 27929 14453 20939 10941 10213 1 1 1 1 1 1 1 1 1 1 2739 2167 2409 2546 3059 3059 3901 LIPNATGTGTFSPGASPGSEAR 22 Phospho (STY) _LIPNATGTGTFSPGAS(ph)PGSEAR_ LIPNATGTGTFS(0.017)PGAS(0.968)PGS(0.014)EAR LIPNAT(-96.69)GT(-72.87)GT(-54.71)FS(-17.48)PGAS(17.48)PGS(-18.3)EAR 0 0 1 0 Q16512 Q16512 Q16512 PKN1 Serine/threonine-protein kinase N1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.72705078125 3 723.338835 2166.99468 34188.8829305585 2.0109 0.0014545 105610 76.389 105610 76.39 800.061364225192 77.271 0.43018 77.271 76.998 77.428 -1.4211E-14 39 14 4 0.672425848257064 0.00211621249129672 0.0213298715688297 3.6658E-08 1 18100 158.72 130.21 6 15316000 6335 6706.8 6313.4 6071.3 6279.6 5826.7 6344.6 5821.9 5666.7 13922 5994.4 6332 6358.2 6268.7 6374.8 5877.4 6436.6 6259.5 5620 13244 1 1 1 1 1 1 1 1 1 1 2740 1102 2410 2547 3060 3060 1919 LISPYKK 7 Phospho (STY) _LIS(ph)PYKK_ LIS(0.995)PY(0.005)KK LIS(23.14)PY(-23.14)KK 0 0 1 1 O14929 O14929 O14929 HAT1 Histone acetyltransferase type B catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 539.331420898438 3 310.1683 927.48307 42870.8727242672 1.7769 0.00055113 738830 229.16 738840 229.16 539.331206014984 66.324 0.79049 66.324 65.957 66.747 0 85 26 5 0.967179276264573 0.00530520766737414 0.140155070623383 0.012754 1 15536 73.841 29.394 2 73859000 16966 28960 18457 27163 11760 16315 13437 20646 29993 1480.9 16060 27347 18421 27826 12369 16895 14051 20586 28892 1872.3 1 1 1 1 1 1 1 1 1 1 2741 71 2411 2548 3061 3061 117 LISQIVSSITASLR 14 Phospho (STY) _LIS(ph)QIVSSITASLR_ LIS(1)QIVSSITASLR LIS(41.79)QIVS(-41.79)S(-49.31)IT(-55.94)AS(-64.79)LR 0 0 1 0 Q9BQE3;Q9H853;Q9NY65;P68363;P68366 Q9BQE3;P68363 P68363 TUBA1C;TUBA4B;TUBA8;TUBA1B;TUBA4A Tubulin alpha-1C chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-8 chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.67529296875 3 523.286684 1566.83822 41646.6337504675 1.8241 0.0009545 145980 76.388 145980 76.389 599.674366664435 105.43 0.17607 105.43 105.36 105.53 0 11 5 3 0.571230169956494 0.000911069600288468 0.0127022331976288 0.010039 1 24802 73.688 62.475 5 1810000 0 282.68 0 443.71 263.68 0 166.58 0 0 692.5 0 267.95 0 438.63 250.48 0 169.67 0 0 652.07 0 1 0 1 1 0 1 0 0 1 2742 789;1805 2412 2549 3062 3062 1260 LKAEVDNRSPQK 12 Phospho (STY) _LKAEVDNRS(ph)PQK_ LKAEVDNRS(1)PQK LKAEVDNRS(94.88)PQK 0 0 1 2 Q5W0B1 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 539.059204101563 4 366.935616 1463.71336 42966.3768836191 1.914 0.0007023 468400 171.87 468400 171.87 538.807996269809 46.155 0.53133 46.155 45.904 46.436 0 59 17 5 0.749077189923567 0.00504050399165538 0.118363556883768 0.0022866 1 10642 94.882 58.597 1 34966000 31887 18611 31600 18487 28603 26800 33530 28016 19040 823.69 30172 17580 31809 19123 29260 26509 33497 28079 19401 1424 1 1 1 1 1 1 1 1 1 1 2743 1217 2413 2550 3063 3063 2143 LKATVTPSPVK 11 Phospho (STY) _LKATVTPS(ph)PVK_ LKATVT(0.001)PS(0.999)PVK LKAT(-46.2)VT(-28.8)PS(28.8)PVK 0 0 1 1 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 478.044494628906 4 305.921711 1219.65774 44973.2355279716 0.50508 0.00015452 561820 171.87 561820 171.87 477.793902686963 60.774 0.66533 60.774 60.459 61.124 0 83 22 5 0.989540371505691 0.00505358391852212 0.060403785743177 0.0001822 1 14216 107.61 68.59 3 97924000 22201 15892 22185 15999 15502 19996 17712 20275 17424 893.01 21008 15013 22262 16485 16157 19870 17916 20354 17205 1310.1 1 1 1 1 1 1 1 1 1 1 2744 1913 2414 2551 3064 3064 3471;4762 LKDLFDYSPPLHK 13 Phospho (STY) _LKDLFDYS(ph)PPLHK_ LKDLFDYS(1)PPLHK LKDLFDY(-73.87)S(73.87)PPLHK 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.830627441406 4 413.957554 1651.80111 40864.9379994738 1.9707 0.00081577 415190 171.87 415190 171.87 586.080357605745 95.895 2.0153 95.895 95.227 97.243 0 252 69 5 0.98771156782326 0.00548782494738508 0.0864908534216342 7.7803E-07 2 22378 140.16 116.83 2 43595000 9264.3 7681.9 10091 8408.1 5975.3 9902.4 6800.6 8009.9 9661.4 13021 8769.5 7261 10064 8612.9 6321.1 9859.8 6961.2 8500.1 9411.6 12446 2 2 2 2 2 2 2 2 2 2 2745 2072 2415 2552 3065;3066 3066 3744 LKESAPSR 8 2 Phospho (STY) _LKES(ph)APS(ph)R_ LKES(1)APS(1)R LKES(51.09)APS(51.09)R 0 0 2 1 Q8TC12 Q8TC12 Q8TC12 RDH11 Retinol dehydrogenase 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.382202148438 2 524.217222 1046.41989 36090.8882311198 1.9954 0.001046 437160 229.16 437160 229.17 753.3815162426 42.776 0.634 42.776 42.425 43.059 0 64 20 4 0.873997264453119 0.00279487674411421 0.0528581686590744 0.042166 1 9757 51.092 21.793 1 76219000 30484 27031 27752 32281 26189 26440 20657 23931 30084 9660.8 28835 25565 28073 32730 26600 26750 21551 24393 29284 9650.6 1 1 1 1 1 1 1 1 1 1 2746 1542 2416 2553 3067 3067 2831;2832 LKGTSPSSSSRPQR 14 Phospho (STY) _LKGTS(ph)PSSSSRPQR_ LKGT(0.055)S(0.664)PS(0.111)S(0.111)S(0.029)S(0.029)RPQR LKGT(-10.78)S(7.77)PS(-7.77)S(-7.77)S(-13.58)S(-13.58)RPQR 0 0 1 2 Q8N1F7 Q8N1F7 Q8N1F7 NUP93 Nuclear pore complex protein Nup93 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.369445800781 3 523.257788 1566.75153 38177.4691309093 1.7752 0.00092887 291970 152.78 291970 152.78 676.033190000764 32.453 0.53105 32.453 32.148 32.679 0 64 17 5 0.990950549314963 0.00465088987459399 0.0403960552883479 0.026916 1 7228 61.87 50.162 6 99423000 19612 16014 17669 14757 16639 19708 17243 18291 17434 3838 18551 15120 17892 15308 16955 19523 17528 18518 17194 4037.2 1 1 1 1 1 1 1 1 1 1 2747 1453 2417 2554 3068 3068 2690 LKLSPSPSSR 10 Phospho (STY) _LKLS(ph)PSPSSR_ LKLS(0.979)PS(0.021)PSSR LKLS(16.73)PS(-16.73)PS(-45.8)S(-59.56)R 0 0 1 1 Q03252;P20700 Q03252;P20700 P20700 LMNB2;LMNB1 Lamin-B2;Lamin-B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.307312011719 3 384.532189 1150.57474 42700.5275621626 0.53712 0.00020654 397300 152.78 397300 152.78 537.307813589002 53.202 0.8747 53.202 52.899 53.773 0 115 30 6 0.984493819615788 0.00192110924054953 0.0077977718389808 2.0782E-06 1 12362 143.43 120.12 4 483170000 71038 53648 78102 54455 31694 68887 40128 56531 51417 1176.6 67247 50684 77686 56095 35033 68252 40751 57219 50254 2416.2 1 1 1 1 1 1 1 1 1 1 2748 859;448 2418 2555 3069 3069 724;725;726 LKLSPSPSSR 10 2 Phospho (STY) _LKLS(ph)PSPSS(ph)R_ LKLS(0.998)PS(0.025)PS(0.085)S(0.892)R LKLS(28.89)PS(-15.84)PS(-10.2)S(10.2)R 0 0 2 1 Q03252;P20700 Q03252;P20700 P20700 LMNB2;LMNB1 Lamin-B2;Lamin-B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.963500976563 3 411.187633 1230.54107 41797.8604566075 1.6086 0.00066145 371550 152.78 371550 152.78 563.96293017376 57.338 3.8271 57.338 56.425 60.252 -7.1054E-15 324 131 5 0.940482556665372 0.00906523504520514 0.06925347524654 0.0055353 2 13347 86.214 70.324 6 75051000 45217 45007 43959 45362 31737 46218 33108 41956 49631 12391 42782 42519 44189 46568 32963 46258 34088 42623 48270 12639 2 2 2 2 2 2 2 2 2 2 2749 859;448 2418 2556 3070;3071 3070 724;725;726 LKLSPSPSSR 10 2 Phospho (STY) _LKLS(ph)PS(ph)PSSR_ LKLS(0.996)PS(0.493)PS(0.274)S(0.237)R LKLS(22.46)PS(2.57)PS(-2.57)S(-3.17)R 0 0 2 1 Q03252;P20700 Q03252;P20700 P20700 LMNB2;LMNB1 Lamin-B2;Lamin-B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.942260742188 2 616.277811 1230.54107 33835.6816185612 1.9829 0.001222 371850 229.16 371850 229.16 845.440874055368 57.298 2.5633 57.298 56.397 58.96 0 215 87 4 0.959519079500501 0.00103699581522885 0.0184554540816598 0.039702 1 13591 51.875 41.165 6 40552000 18470 15375 18299 16127 14784 17740 15511 19110 18653 32209 17477 14529 18394 16539 15223 17787 15840 20086 18272 30770 1 1 1 1 1 1 1 1 1 1 2750 859;448 2418 2556 3072 3072 724;725;726 LKPGGVGAPSSSSPSPSPSAR 21 Phospho (STY) _LKPGGVGAPSSSSPS(ph)PSPSAR_ LKPGGVGAPSSS(0.002)S(0.039)PS(0.84)PS(0.116)PS(0.004)AR LKPGGVGAPS(-58.54)S(-39.53)S(-26.56)S(-13.37)PS(8.6)PS(-8.6)PS(-23.57)AR 0 0 1 1 Q92797 Q92797 Q92797 SYMPK Symplekin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.436889648438 3 668.324638 2001.95208 35270.8163266844 2.562 0.0017122 228600 152.78 228600 152.78 821.435015564938 49.413 0.28275 49.413 49.228 49.511 0 22 9 3 0.975707134694106 0.00205957603946539 0.0179342071367002 1.8824E-08 1 11459 170.1 144.78 7 19926000 13112 15822 14016 15297 8381.8 13172 8885.9 12992 17111 9291.1 12410 14944 13993 15704 8853.4 13313 9246.1 13319 16535 9049.3 1 1 1 1 1 1 1 1 1 1 2751 1622 2419 2557 3073 3073 2998 LKSEDGVEGDLGETQSR 17 Phospho (STY) _LKS(ph)EDGVEGDLGETQSR_ LKS(1)EDGVEGDLGETQSR LKS(72.8)EDGVEGDLGET(-72.8)QS(-90.56)R 0 0 1 1 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.059204101563 3 633.949237 1898.82588 35360.3879536279 1.8548 0.0011758 240990 152.77 240990 152.78 787.0587122341 58.401 1.3994 58.401 58.111 59.51 0 126 47 5 0.976198803306343 0.00271518046356168 0.0310971726010725 3.8683E-07 1 13722 141.48 118.15 3 69749000 30255 9219.6 30711 11501 6677.4 30477 7551.8 14987 8940.7 12625 28630 8722.5 30606 11974 8209 29532 7683.1 16014 8762.8 12235 1 1 1 1 1 1 1 1 1 1 2752 896 2420 2558 3074 3074 1474 LKSPSQK 7 Phospho (STY) _LKS(ph)PSQK_ LKS(0.973)PS(0.027)QK LKS(15.54)PS(-15.54)QK 0 0 1 1 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.966552734375 2 434.220418 866.426283 36507.4673626083 2.2967 0.00099728 791640 343.74 791640 343.75 777.964695514969 43.136 0.3569 43.136 42.969 43.326 0 25 11 3 0.619071675768913 0.000895988637625312 0.0270456066012489 0.019383 1 9870 68.626 10.841 2 15003000 26398 28124 26715 29117 22845 25467 23103 27265 29490 8155 24981 26573 26835 29777 23422 25727 23680 27524 28827 8309.9 1 1 1 1 1 1 1 1 1 1 2753 1755 2421 2559 3075 3075 3225 LKSSTSFANIQENSN 15 Phospho (STY) _LKS(ph)STSFANIQENSN_ LKS(0.56)S(0.221)T(0.161)S(0.058)FANIQENSN LKS(4.04)S(-4.04)T(-5.41)S(-9.86)FANIQENS(-136.77)N 0 0 1 1 Q86WC4 Q86WC4 Q86WC4 OSTM1 Osteopetrosis-associated transmembrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1089.54821777344 2 860.382906 1718.75126 29924.6944440632 1.7136 0.0014743 266350 229.16 266350 229.16 1089.54645844841 69.03 0.46962 69.03 68.794 69.264 0 41 15 4 0.978446483350585 0.000747333463452111 0.012467314597216 1.4131E-22 1 16188 259.58 248.79 5 21763000 9646.6 12118 8427.6 11446 7536.8 8900 8417.8 10256 11266 13389 9123.6 11443 8546.9 11752 7716.2 9076.7 8604.3 10639 10996 12845 1 1 1 1 1 1 1 1 1 1 2754 1388 2422 2560 3076 3076 2524;2525;2526 LKTEKEPDATPPSPR 15 Phospho (STY) _LKTEKEPDATPPS(ph)PR_ LKTEKEPDAT(0.003)PPS(0.997)PR LKT(-67.66)EKEPDAT(-24.65)PPS(24.65)PR 0 0 1 2 P28715 P28715 P28715 ERCC5 DNA repair protein complementing XP-G cells MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.339172363281 4 437.217196 1744.83968 39977.2527103617 1.1052 0.0004832 393100 171.87 393110 171.87 609.089415058217 46.546 0.57029 46.546 46.258 46.828 0 65 19 5 0.955880965924004 0.00522777893721623 0.019930470106752 0.0056178 1 10730 86.357 64.759 3 59947000 26618 12887 29193 13049 17652 28664 18556 21388 12793 3304.2 25197 12174 29108 13639 18602 27950 18688 21835 12867 3606.3 1 1 1 1 1 1 1 1 1 1 2755 495 2423 2561 3077 3077 821 LKTSLGK 7 Phospho (STY) _LKTS(ph)LGK_ LKT(0.251)S(0.749)LGK LKT(-4.75)S(4.75)LGK 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.315765380859 3 276.15265 825.43612 44710.892868652 0.59171 0.0001634 829840 229.16 829840 229.16 505.315756337762 57.975 0.52514 57.975 57.675 58.201 0 37 17 3 0.945773904341557 0.00173019268352025 0.011595810921032 0.0079361 1 13551 82.417 33.116 2 11973000 19328 17648 19220 16239 8687 19259 10419 15341 17354 4102.8 18289 16664 19234 16808 9468.5 19128 10712 15664 16829 4218.3 1 1 1 1 1 1 1 1 1 1 2756 603 2424 2562 3078 3078 989 LLAAGSPLAHSR 12 Phospho (STY) _LLAAGS(ph)PLAHSR_ LLAAGS(1)PLAHSR LLAAGS(70.68)PLAHS(-70.68)R 0 0 1 0 Q8IZN3 Q8IZN3 Q8IZN3 ZDHHC14 Probable palmitoyltransferase ZDHHC14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 501.275054931641 3 424.886855 1271.63874 44462.7732362856 0.88075 0.00037422 179780 76.387 179780 76.388 501.2741254282 62.876 0.49531 62.876 62.615 63.11 7.1054E-15 39 16 3 0.919171161381312 0.00215781971283297 0.0205774690919399 7.3668E-05 1 14754 120.66 99.806 2 16487000 4954.2 7503.6 4962.7 7392.8 3880.3 5545.3 4848.4 4882.9 7507.8 1753.8 4688 7087.8 4985.2 7567.7 4017.9 5635.8 4961.6 4976.4 7295.1 1764.4 1 1 1 1 1 1 1 1 1 1 2757 1445 2425 2563 3079 3079 2680 LLAQAEGEPCYIR 13 Phospho (STY) _LLAQAEGEPCY(ph)IR_ LLAQAEGEPCY(1)IR LLAQAEGEPCY(66.53)IR 0 0 1 0 P29597 P29597 P29597 TYK2 Non-receptor tyrosine-protein kinase TYK2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.301818847656 3 533.912741 1598.71639 42094.3348335494 1.3123 0.00070067 143070 76.388 143070 76.389 610.300081319462 73.381 0.5162 73.381 73.129 73.645 0 36 17 3 0.463038903064887 0.000447839554965618 0.00886106357618954 0.012695 1 17249 66.533 49.901 1 7830100 4450.2 4182.7 4537.8 5066.4 4626.9 4185.1 5257 5423.3 5342.1 4672.9 4211.3 3956.3 4566.5 5134 4699.1 4258.6 5323.3 5532.8 5267.5 4525.6 1 1 1 1 1 1 1 1 1 1 2758 502 2426 2564 3080 3080 4875 LLAVAATAPPDAPNREEVFDER 22 Unmodified _LLAVAATAPPDAPNREEVFDER_ 0 0 0 1 P18206 P18206 P18206 VCL Vinculin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 870.800170898438 3 794.408039 2380.20229 33880.2978355998 1.0864 0.00086307 96157 76.388 96158 76.389 871.129362838628 79.918 0.34291 79.918 79.704 80.047 -1.4211E-14 27 11 3 0.983453080452738 0.00126071712132527 0.0197511246248318 8.6535E-08 1 18720 159.78 137.94 1 9834000 4020.8 8122.7 3861.8 6985.6 5111.3 4351.5 4483.3 6602.4 6591.8 18961 3804.1 7666.7 3911.9 7199.7 5106.3 4543.2 4651.5 7106.8 6414.7 18007 1 1 1 1 1 1 1 1 1 1 2759 426 2427 2565 3081 3081 LLDEEEATDNDLR 13 Unmodified _LLDEEEATDNDLR_ 0 0 0 0 Q8WUM4 Q8WUM4 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.940856933594 2 766.857374 1531.7002 32891.9755070021 1.9194 0.0014719 149420 114.58 149420 114.58 881.43838985301 66.754 0.77492 66.754 66.23 67.005 0 77 26 4 0.979735634322184 0.00280455760585989 0.097463062256688 5.5005E-10 1 15659 186.87 135.44 1 40368000 14796 24518 17017 24371 12613 17738 13360 19454 23455 35635 14009 23160 16955 24926 13080 18164 13840 20521 22715 34005 1 1 1 1 1 1 1 1 1 1 2760 1566 2428 2566 3082 3082 LLDHMAPPPVADQASPR 17 Phospho (STY) _LLDHMAPPPVADQAS(ph)PR_ LLDHMAPPPVADQAS(1)PR LLDHMAPPPVADQAS(108.14)PR 0 0 1 0 Q9C004 Q9C004 Q9C004 SPRY4 Protein sprouty homolog 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.023071289063 3 632.300888 1893.88083 37189.5574339303 1.6208 0.0010248 120810 76.387 120810 76.388 709.022806849979 73.296 0.69071 73.296 72.983 73.674 0 71 23 4 0.958235861613091 0.00343307600049095 0.042795003876922 8.0971E-05 1 17197 108.14 83.857 1 23735000 4694.2 8432.4 5103.7 8529.7 3574 4337.3 4047.2 6792.7 8900.5 6726.8 4443.4 7966.4 5097.8 8684.7 3728.5 4578 4229.9 6921.1 8576.3 6491.3 1 1 1 1 1 1 1 1 1 1 2761 1881 2429 2567 3083 3083 3420 LLDPEDVDVPQPDEK 15 Unmodified _LLDPEDVDVPQPDEK_ 0 0 0 0 Q15149 Q15149 Q15149 PLEC Plectin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.393615722656 3 570.280713 1707.82031 37910.9037137409 2.0301 0.0011577 267900 152.78 267900 152.78 723.391288454637 83.515 0.49243 83.515 83.233 83.726 0 39 16 3 0.947243992282112 0.00240004835911866 0.0838804936200194 0.0018631 1 19527 97.223 77.9 1 8607600 8917 6243.7 10064 7027.8 7297.1 8900.7 6869.7 7305.8 6012.2 9476.5 8442.1 5902.7 10033 7198.1 7561.7 8835.9 6989.8 7675.6 5968.6 9092.4 1 1 1 1 1 1 1 1 1 1 2762 1061 2430 2568 3084 3084 LLEELEEGQK 10 Unmodified _LLEELEEGQK_ 0 0 0 0 Q15819;Q13404 Q15819 Q15819 UBE2V2;UBE2V1 Ubiquitin-conjugating enzyme E2 variant 2;Ubiquitin-conjugating enzyme E2 variant 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.318603515625 3 396.543321 1186.60813 42858.6357999914 1.2471 0.00049451 385270 152.78 385270 152.78 549.318125862331 89.46 0.52073 89.46 89.141 89.662 0 37 17 3 1 0.000308302783767416 0.00284555905719591 1.1762E-06 1 20839 159.79 117.7 1 7690400 4771.3 5476.8 3796 4738.7 4009.5 4942.9 4545.9 4548.1 5137.1 2521.4 4511.2 5169.6 3882 4913.8 4064.4 4945.2 4617.8 4653.3 5043.7 2479.5 1 1 1 1 1 1 1 1 1 1 2763 948 2431 2569 3085 3085 LLEENETEAVTVPTPSPTPVR 21 Phospho (STY) _LLEENETEAVTVPTPS(ph)PTPVR_ LLEENETEAVTVPT(0.314)PS(0.603)PT(0.083)PVR LLEENET(-78.58)EAVT(-39.49)VPT(-2.83)PS(2.83)PT(-8.6)PVR 0 0 1 0 Q9UHR4 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 863.776306152344 3 787.052472 2358.13559 33510.5998388891 1.9296 0.0015187 97055 76.388 97057 76.389 863.774618703017 82.147 0.6909 82.147 81.795 82.486 0 105 23 6 0.990574270286579 0.0125830385243914 0.445941951639783 6.2027E-08 2 19208 156.7 142.97 5 50541000 6787.7 11662 7689 9557.4 7443.8 6413.5 6121.6 8367 12525 32205 6426.3 11004 7685.1 9891.1 7555.8 6654 6470.1 9287.4 12087 30519 2 2 2 2 2 2 2 2 2 2 2764 2149 2432 2570 3086;3087 3087 3872 LLGRNSNSK 9 Phospho (STY) _LLGRNS(ph)NSK_ LLGRNS(1)NSK LLGRNS(40.79)NS(-40.79)K 0 0 1 1 O75534 O75534 O75534 CSDE1 Cold shock domain-containing protein E1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 509.620513916016 3 356.844767 1067.51247 44393.4697454893 0.74834 0.00026704 428130 152.78 428130 152.78 509.62020343836 47.736 0.67143 47.736 47.481 48.152 7.1054E-15 60 22 4 0.730937391142845 0.00501739541409369 0.089348909158694 0.0029394 1 11057 92.747 67.126 2 46290000 42680 60211 41507 58856 23776 46683 20855 42200 64299 1700.2 40382 56872 41640 60319 25175 47283 22558 42554 61601 2577.6 1 1 1 1 1 1 1 1 1 1 2765 191 2433 2571 3088 3088 335 LLGSQPS 7 Phospho (STY) _LLGS(ph)QPS_ LLGS(1)QPS LLGS(38.56)QPS(-38.56) 0 0 1 0 Q9UMX0;Q9UHD9 Q9UMX0 Q9UMX0 UBQLN1;UBQLN2 Ubiquilin-1;Ubiquilin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.759399414063 2 391.178219 780.341885 44987.3671262748 0.45967 0.00017981 292910 114.58 292910 114.58 505.759542916933 65.902 0.94916 65.902 65.454 66.403 0 52 31 2 0.843787115407071 0.000669971046849235 0.0194923427127887 0.025217 1 15459 63.48 62.13 2 5766600 3479 3665.4 5461.7 4299.8 5244.7 4499.4 5569.3 5433.4 3965.4 2232.6 3299.5 3466.2 5383.6 4379.4 5338.2 4517 5609.5 5481.2 3980.7 2228 1 1 1 1 1 1 1 1 1 1 2766 2147 2434 2572 3089 3089 3869 LLHPSPDLVSQEATLSEAR 19 Phospho (STY) _LLHPS(ph)PDLVSQEATLSEAR_ LLHPS(1)PDLVSQEATLSEAR LLHPS(88.95)PDLVS(-88.95)QEAT(-134.77)LS(-134.1)EAR 0 0 1 0 Q8IY22 Q8IY22 Q8IY22 CMIP C-Maf-inducing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.41259765625 3 715.019214 2142.03581 35097.2362721664 1.5293 0.0010935 106830 76.388 106840 76.389 791.408311495041 81.278 0.42643 81.278 81.021 81.447 0 32 14 3 0.975813436149667 0.00104296902834274 0.0400260453050182 5.2469E-08 1 19031 166.59 144.99 4 7240100 4039.4 5450.3 3884 5063.5 5287.5 5190.3 5192.8 4939.4 5754 15486 3821.7 5146.5 3936.9 5224.7 5282.1 5222.8 5305.7 5431 5653.7 14696 1 1 1 1 1 1 1 1 1 1 2767 1432 2435 2573 3090 3090 2612 LLHQFSFSPER 11 Phospho (STY) _LLHQFSFS(ph)PER_ LLHQFS(0.001)FS(0.999)PER LLHQFS(-29.49)FS(29.49)PER 0 0 1 0 Q9UJX6 Q9UJX6 Q9UJX6 ANAPC2 Anaphase-promoting complex subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.281860351563 3 480.893898 1439.65987 41635.0877406041 1.256 0.00060399 158840 76.388 158850 76.388 557.281590739416 83.217 0.78331 83.217 82.914 83.697 0 59 26 3 0.779401111764799 0.0021324296424556 0.0266588093680057 2.974E-10 1 19463 184.87 141.32 2 10584000 3001.3 4838.2 2441.1 3914 2928.4 3195.6 2719.2 3948.8 5210.3 3291.9 2837.9 4565.2 2495.8 4063.6 2942.4 3250.9 2846.2 4031 5035.4 3191.1 1 1 1 1 1 1 1 1 1 1 2768 2164 2436 2574 3091 3091 3896 LLIVQDASER 10 Phospho (STY) _LLIVQDAS(ph)ER_ LLIVQDAS(1)ER LLIVQDAS(69.03)ER 0 0 1 0 O95772 O95772 O95772 STARD3NL MLN64 N-terminal domain homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.888977050781 2 612.30521 1222.59587 37049.6079778846 1.9454 0.0011912 187130 114.58 187130 114.58 726.887102931869 78.267 0.79771 78.267 77.979 78.777 0 42 27 2 0.640035998888918 0.00153529904548088 0.0584992286769335 0.016913 1 18389 69.03 37.187 1 15463000 7847 12579 8330.6 10670 9973.4 10009 8745.7 10431 11070 13726 7427 11872 8378.4 11062 10009 10093 9025 10860 10825 13166 1 1 1 1 1 1 1 1 1 1 2769 259 2437 2575 3092 3092 433 LLKEGEEPTVYSDEEEPKDESAR 23 Phospho (STY) _LLKEGEEPTVYS(ph)DEEEPKDESAR_ LLKEGEEPTVYS(1)DEEEPKDESAR LLKEGEEPT(-44.27)VY(-104.56)S(44.27)DEEEPKDES(-73.4)AR 0 0 1 2 O00264 O00264 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.431396484375 4 683.306197 2729.19568 33415.6913924568 1.9136 0.0013076 251530 171.87 251530 171.87 855.430856845342 64.942 0.63023 64.942 64.684 65.314 0 51 21 4 0.928975686914788 0.00112021880175941 0.0109254280639728 2.494E-08 1 15270 163.92 147.91 4 14078000 5154.1 11486 4995.3 11626 9367.9 4683.6 10968 7878.7 11261 11258 4876.5 10852 5095.6 11817 9271.3 5065.7 11095 8118.4 11098 10784 1 1 1 1 1 1 1 1 1 1 2770 38 2438 2576 3093 3093 61 LLLAEDSEEEVDFLSER 17 Phospho (STY) _LLLAEDS(ph)EEEVDFLSER_ LLLAEDS(1)EEEVDFLSER LLLAEDS(62.25)EEEVDFLS(-62.25)ER 0 0 1 0 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1152.55322265625 2 1037.46683 2072.91911 28239.0603135524 1.1292 0.0011715 110440 114.58 110450 114.58 1152.54966980427 100.99 0.28946 100.99 100.81 101.1 0 12 9 2 0.855382854651694 0.00442599871065218 0.267657677365403 1.3422E-15 1 23686 216.72 174.75 2 50354000 11593 11322 12985 11162 9208 10767 9313.8 10790 12473 163230 10975 10695 12949 11464 9571.8 11118 9562.1 15741 12173 153950 1 1 1 1 1 1 1 1 1 1 2771 1016 2439 2577 3094 3094 1729 LLLERPSPIR 10 Phospho (STY) _LLLERPS(ph)PIR_ LLLERPS(1)PIR LLLERPS(157.33)PIR 0 0 1 1 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 501.627258300781 3 425.239117 1272.69552 43882.3850509763 1.0765 0.00045776 179630 76.387 179640 76.388 501.626582002256 73.808 1.0654 73.808 73.414 74.479 0 116 36 5 0.950703711914139 0.00343379787784089 0.062149210258297 1.1923E-06 1 17276 157.33 112.18 1 134270000 9455.2 11949 8588.1 12085 8120.1 9003.3 7642.4 9751.6 12778 1634.3 8943.8 11289 8691 12350 8266 9174.5 7942.9 9801.8 12390 1764.5 1 1 1 1 1 1 1 1 1 1 2772 1755 2440 2578 3095 3095 3226 LLLERPSPIRDR 12 Phospho (STY) _LLLERPS(ph)PIRDR_ LLLERPS(1)PIRDR LLLERPS(127.3)PIRDR 0 0 1 2 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.003845214844 3 515.615135 1543.82358 40677.3327064595 1.2223 0.00063021 148150 76.388 148150 76.388 592.003029841966 64.636 1.7999 64.636 63.948 65.748 0 215 61 6 0.868002110794207 0.0167703889545058 0.219600400244611 7.5066E-05 1 15127 127.3 88.078 1 459890000 21512 25062 22981 21864 23152 24597 23473 25679 23622 3930.4 20362 23657 23059 22689 23489 24553 23882 25835 23301 4295.3 1 1 1 1 1 1 1 1 1 1 2773 1755 2441 2579 3096 3096 3226 LLLGSPSSLSPFSK 14 Phospho (STY) _LLLGSPSSLS(ph)PFSK_ LLLGSPSSLS(1)PFSK LLLGS(-68.91)PS(-52.98)S(-38.46)LS(36.65)PFS(-36.65)K 0 0 1 0 Q9H165 Q9H165 Q9H165 BCL11A B-cell lymphoma/leukemia 11A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.704772949219 3 504.928497 1511.76366 38921.5222825209 1.9962 0.001008 302570 152.78 302570 152.78 657.703391233875 100.8 0.17058 100.8 100.73 100.9 -1.4211E-14 11 5 4 0.97446842900412 0.000845217036209652 0.0181889666227961 0.00012705 1 23629 113.47 91.916 5 24592000 6730.9 3668.3 6798.8 4963.6 4712.2 6678.9 4347.6 5399.4 4154 17346 6369.4 3472.7 6815.9 5045 4899.8 6634.7 4437.7 5988.2 4106.9 16458 1 1 1 1 1 1 1 1 1 1 2774 1910 2442 2580 3097 3097 3468 LLLPGELAK 9 Unmodified _LLLPGELAK_ 0 0 0 0 Q99880;Q99879;Q99877;Q93079;Q8N257;Q5QNW6;Q16778;P62807;P58876;P57053;P33778;P23527;P06899;O60814;Q96A08 Q99880 Q99880 HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST3H2BB;HIST2H2BF;HIST2H2BE;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BK;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 3-B;Histone H2B type 2-F;Histone H2B type 2-E;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-K;Histone H2B type 1-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.468505859375 2 477.305136 952.595718 37484.2929724744 2.5144 0.0012001 480120 229.16 480120 229.16 706.467826172202 92.207 0.57281 92.207 91.91 92.483 0 46 19 3 0.907800801477815 0.00107941976774286 0.0316926495469389 0.0018446 1 21450 107.47 30.566 1 17648000 11765 15383 12766 17062 16717 12665 15569 16732 15665 24623 11136 14541 12843 17346 16715 12989 15906 17368 15453 23573 1 1 1 1 1 1 1 1 1 1 2775 156 2443 2581 3098 3098 LLNSPAK 7 Phospho (STY) _LLNS(ph)PAK_ LLNS(1)PAK LLNS(67.7)PAK 0 0 1 0 Q9UBZ9 Q9UBZ9 Q9UBZ9 REV1 DNA repair protein REV1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.873291015625 2 411.709686 821.40482 38875.0258992976 2.3129 0.00095226 556610 229.16 556610 229.16 640.872533673869 60.912 0.43829 60.912 60.716 61.155 0 32 14 3 0.988479843710295 0.00132713194699787 0.0758834564320781 0.021983 1 14292 67.704 32.435 1 11344000 19926 21611 22001 21440 10971 23744 11088 17440 20509 5924.5 18862 20414 21900 22061 11795 23630 11539 17916 19837 5982.3 1 1 1 1 1 1 1 1 1 1 2776 2133 2444 2582 3099 3099 3836 LLPAGSPSPGSERPR 15 Phospho (STY) _LLPAGS(ph)PSPGSERPR_ LLPAGS(0.968)PS(0.032)PGSERPR LLPAGS(14.74)PS(-14.74)PGS(-76.76)ERPR 0 0 1 1 A2RU54 A2RU54 A2RU54 HMX2 Homeobox protein HMX2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.654968261719 3 534.266283 1599.77702 40356.1147495029 1.4294 0.00076367 142980 76.388 142980 76.389 610.653593667946 54.081 0.53045 54.081 53.829 54.36 0 42 17 3 0.948697728747061 0.00212337375372503 0.0325027119050047 4.4489E-07 1 12604 155.2 112.99 3 15927000 13576 6647.6 12469 6717.4 5574 12558 5014.6 8381.2 5556.4 2577.7 12843 6280.1 12534 6986.8 6056.3 12280 5146.1 8646.5 5459.5 2621.2 1 1 1 1 1 1 1 1 1 1 2777 5 2445 2583 3100 3100 10 LLPEPGPSDSPGPK 14 Phospho (STY) _LLPEPGPSDS(ph)PGPK_ LLPEPGPS(0.001)DS(0.999)PGPK LLPEPGPS(-29.55)DS(29.55)PGPK 0 0 1 0 Q8IU68 Q8IU68 Q8IU68 TMC8 Transmembrane channel-like protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.677368164063 3 490.900718 1469.68033 38901.927737977 2.1813 0.0010708 311220 152.78 311220 152.78 643.676628138995 74.667 0.73117 74.667 74.388 75.119 0 55 24 3 0.938101857469716 0.00187042724677669 0.0325285894823242 2.3988E-07 1 17568 165.9 144.64 2 12248000 3776.3 2954.5 4308 3755.5 9858.3 3816.7 10123 5835.3 3213.2 5879.2 3575.3 2795.6 4375.8 3808.1 9673.7 3859.3 10102 5952.2 3463.5 5671 1 1 1 1 1 1 1 1 1 1 2778 1406 2446 2584 3101 3101 2559 LLPPASP 7 Phospho (STY) _LLPPAS(ph)P_ LLPPAS(1)P LLPPAS(217.21)P 0 0 1 0 Q9Y4R8 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 502.275360107422 2 387.693505 773.372457 44459.1874590802 0.90944 0.00035258 295550 114.58 295550 114.58 502.274875464348 79.356 3.5543 79.356 77.951 81.505 0 303 122 3 0.994316049661714 0.00189637600095909 0.0560993511622455 6.4185E-13 4 18549 217.21 203.05 1 25717000 19132 25278 17850 24336 12569 17050 13414 19096 25411 9983.5 18099 23874 17985 24928 13090 17459 13942 19376 24564 9842.6 4 4 4 4 4 4 4 4 4 4 2779 2285 2447 2585 3102;3103;3104;3105 3103 4225 LLPPVGTGRSPR 12 Phospho (STY) _LLPPVGTGRS(ph)PR_ LLPPVGT(0.007)GRS(0.993)PR LLPPVGT(-21.56)GRS(21.56)PR 0 0 1 1 Q9NWZ5 Q9NWZ5 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 520.29443359375 3 443.906138 1328.69658 43909.1256672808 1.215 0.00053936 172080 76.387 172080 76.388 520.293643849401 62.881 1.6903 62.881 62.492 64.182 0 167 57 4 0.949514725124255 0.00252636652469117 0.0195923344491661 1.9522E-07 2 14908 157.7 134.1 2 20354000 12042 11250 12019 11682 7564.3 11803 7093.1 9288.4 11596 2726.6 11395 10630 12048 11970 7936.9 11799 7366.1 9496.5 11251 2782.4 2 2 2 2 2 2 2 2 2 2 2780 2058 2448 2586 3106;3107 3107 3725 LLPQTTPENINK 12 2 Phospho (STY) _LLPQT(ph)T(ph)PENINK_ LLPQT(1)T(1)PENINK LLPQT(42.1)T(42.1)PENINK 0 0 2 0 O94851 O94851 O94851 MICAL2 Protein-methionine sulfoxide oxidase MICAL2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.676696777344 3 509.90004 1526.67829 38004.4144114975 2.2535 0.0011491 299620 152.78 299620 152.78 662.676964886125 78.138 0.50781 78.138 77.895 78.403 0 53 17 4 0.934463229368024 0.00198268071318879 0.0277671146983074 0.048424 1 18307 42.095 14.432 1 13154000 11474 8119 12122 6754.3 5794.1 11787 6999.3 9311.5 7762.1 6114.3 10859 7662 12094 7099.3 6271.3 11571 7087.7 9620.3 7626.5 5972.8 1 1 1 1 1 1 1 1 1 1 2781 222 2449 2587 3108 3108 4350;4351 LLPSAPQTLPDGPLASPAR 19 Phospho (STY) _LLPSAPQTLPDGPLAS(ph)PAR_ LLPSAPQTLPDGPLAS(1)PAR LLPS(-58.09)APQT(-52.55)LPDGPLAS(52.55)PAR 0 0 1 0 O15027 O15027 O15027 SEC16A Protein transport protein Sec16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.733093261719 3 661.009991 1980.00814 36691.385743763 1.226 0.00081041 115560 76.388 115560 76.389 737.397868935132 91.393 0.62658 91.393 91.14 91.766 1.4211E-14 64 21 4 0.909007886914223 0.00315322952887592 0.0253943816327069 0.00675 1 21282 83.312 70.52 3 27396000 5243.5 2864.9 6351 2598 3536.4 5662.6 3019.6 5531.1 3652.3 31021 4965.8 2704.8 6296 2733 3748.3 5595.9 3115.8 6487.9 3576.8 29338 1 1 1 1 1 1 1 1 1 1 2782 75 2450 2588 3109 3109 131 LLPSPVTCTPK 11 Phospho (STY) _LLPS(ph)PVTCTPK_ LLPS(0.997)PVT(0.003)CTPK LLPS(25.3)PVT(-25.3)CT(-76.74)PK 0 0 1 0 Q9BU19 Q9BU19 Q9BU19 ZNF692 Zinc finger protein 692 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 584.324829101563 3 431.548852 1291.62473 39995.6894511888 1.1892 0.00051322 354020 152.78 354020 152.78 584.658790613392 79.863 0.68745 79.863 79.533 80.22 0 79 23 4 0.985332589390389 0.00265271347545168 0.018517937652478 5.6496E-05 1 18682 126.83 111.86 3 29415000 10249 5593.9 10554 5391.9 3987.2 10499 3923.4 5612.7 5042.1 3836.2 9699.2 5283.2 10529 5630.7 4434.1 10241 4027.4 5934.8 4927.6 3742.2 1 1 1 1 1 1 1 1 1 1 2783 1830 2451 2589 3110 3110 3348 LLPYPTLASPASD 13 Phospho (STY) _LLPYPTLASPAS(ph)D_ LLPYPTLASPAS(1)D LLPY(-243.95)PT(-169.3)LAS(-67.28)PAS(67.28)D 0 0 1 0 P0C1Z6 P0C1Z6 P0C1Z6 TFPT TCF3 fusion partner MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 827.422241210938 2 712.839083 1423.66361 34049.1918409505 1.7234 0.0012285 160740 114.58 160740 114.58 827.42092609903 101.91 0.28166 101.91 101.79 102.07 -1.4211E-14 29 9 4 0.976574463512641 0.00413632686585478 0.160537250170849 1.4674E-22 1 23997 257.54 233.31 4 35834000 8906.3 7194 9758.4 7685.2 10739 11498 11730 9531.8 7172.1 29709 8430.8 6798.8 9791.1 7922.2 10850 11386 11768 10532 7270.1 28195 1 1 1 1 1 1 1 1 1 1 2784 348 2452 2590 3111 3111 565 LLQLVEDRGSGR 12 Phospho (STY) _LLQLVEDRGS(ph)GR_ LLQLVEDRGS(1)GR LLQLVEDRGS(129.88)GR 0 0 1 1 P17844 P17844 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.2958984375 3 474.908207 1421.70279 42247.9544507885 1.3319 0.00063252 160850 76.387 160850 76.388 551.295408429283 83.517 1.1844 83.517 83.086 84.271 0 109 40 4 0.958111624242219 0.0047140181928878 0.0903759312079422 3.5818E-05 1 19498 129.88 108 1 25727000 3043 8004.1 3962.8 6505.3 4853 3521.4 5576.3 5449.5 8936.3 1867.6 2882.9 7552.7 3949.7 6723 4885.6 3690.5 5733.5 5447.8 8674.9 1884.7 1 1 1 1 1 1 1 1 1 1 2785 421 2453 2591 3112 3112 680 LLQPGGGPDVGTGAPRPGCSPR 22 Phospho (STY) _LLQPGGGPDVGTGAPRPGCS(ph)PR_ LLQPGGGPDVGTGAPRPGCS(1)PR LLQPGGGPDVGT(-56.13)GAPRPGCS(56.13)PR 0 0 1 1 Q9NXH8 Q9NXH8 Q9NXH8 TOR4A Torsin-4A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.074768066406 3 742.687693 2225.04125 35030.6963352822 2.1247 0.001578 102850 76.387 102850 76.388 819.409182350146 61.344 0.55641 61.344 61.009 61.566 0 65 18 5 0.910751827449317 0.0031193439439044 0.0553971245664112 1.5045E-05 1 14359 130.53 112.88 2 51681000 16809 14242 15836 14767 18184 15601 14073 14775 13192 12932 15902 13457 16023 15143 18256 15615 14499 15242 13053 12519 1 1 1 1 1 1 1 1 1 1 2786 2065 2454 2592 3113 3113 3733 LLQSPLCAGCSSDK 14 Phospho (STY) _LLQS(ph)PLCAGCSSDK_ LLQS(1)PLCAGCSSDK LLQS(69.65)PLCAGCS(-69.65)S(-76.63)DK 0 0 1 0 Q9UJX6 Q9UJX6 Q9UJX6 ANAPC2 Anaphase-promoting complex subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.345458984375 3 539.233374 1614.67829 38108.4744113862 2.0857 0.0011247 283320 152.77 283320 152.78 692.342909019869 74.71 0.66989 74.71 74.449 75.119 0 71 22 6 0.985264720232005 0.00393934840052345 0.0779162490878982 0.0023195 1 17524 95.365 77.001 3 22832000 5543.8 13100 5622.7 12371 8351.6 6018.9 7252.9 9070.7 11798 11554 5246.2 12371 5688.5 12645 8302.9 6376.6 7560.1 9328.4 11448 11090 1 1 1 1 1 1 1 1 1 1 2787 2164 2455 2593 3114 3114 3897 LLRPNSLR 8 Phospho (STY) _LLRPNS(ph)LR_ LLRPNS(1)LR LLRPNS(94.62)LR 0 0 1 1 Q8WXG6 Q8WXG6 Q8WXG6 MADD MAP kinase-activating death domain protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 426.581146240234 3 350.193619 1047.55903 48085.4441819399 -0.34614 -0.00012122 218130 76.388 218130 76.388 426.581269613084 55.817 0.50109 55.817 55.566 56.067 -7.1054E-15 35 16 3 0.92481342187851 0.0012001336257852 0.0170386143391291 0.0031257 1 13032 94.616 71.896 1 16357000 9392.3 16666 9027.2 15051 14969 8487.2 16351 14208 16829 1000.5 8886.2 15734 9186.2 15447 14860 8873.8 16591 14060 16585 1270.9 1 1 1 1 1 1 1 1 1 1 2788 1581 2456 2594 3115 3115 2908 LLSISGKR 8 Phospho (STY) _LLSIS(ph)GKR_ LLSIS(1)GKR LLS(-41.05)IS(41.05)GKR 0 0 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 471.286071777344 3 318.510837 952.510682 45549.697418372 0.62669 0.00019961 479650 152.78 479660 152.78 471.286094496826 66.847 0.63596 66.847 66.544 67.18 0 68 21 4 0.961957464801821 0.00541957148218492 0.132945901184166 0.0070878 1 15670 85.622 63.629 2 40280000 8656.6 16059 9442.6 16344 24962 7891.1 26912 18505 17807 1355 8194.4 15172 9656.6 16628 24434 8422.5 27051 18192 17956 1704.2 1 1 1 1 1 1 1 1 1 1 2789 315 2457 2595 3116 3116 520 LLSMPGAQGAAAAGSEPPPATTSPEGQPK 29 Phospho (STY) _LLSMPGAQGAAAAGSEPPPATTS(ph)PEGQPK_ LLSMPGAQGAAAAGS(0.03)EPPPAT(0.025)T(0.23)S(0.716)PEGQPK LLS(-78.23)MPGAQGAAAAGS(-13.83)EPPPAT(-14.61)T(-4.94)S(4.94)PEGQPK 0 0 1 0 Q96KQ7 Q96KQ7 Q96KQ7 EHMT2 Histone-lysine N-methyltransferase EHMT2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.414794921875 4 700.33212 2797.29937 34378.6445244655 1.8449 0.001292 163610 114.58 163610 114.58 815.414345725579 80.455 0.76634 80.455 80.104 80.87 0 78 25 4 0.754547569548214 0.00241411356251114 0.017991586107421 0.002719 1 18815 93.392 79.082 5 27013000 8289.2 11421 9609.4 10828 7519.6 9002.1 7374.6 10361 11439 19023 7848.7 10786 9574.4 11125 7756.1 9157.6 7625 10913 11115 18152 1 1 1 1 1 1 1 1 1 1 2790 1709 2458 2596 3117 3117 3148 LLSNSQTLGNDMLMNTPR 18 Phospho (STY) _LLSNS(ph)QTLGNDMLMNTPR_ LLS(0.226)NS(0.7)QT(0.074)LGNDMLMNTPR LLS(-4.9)NS(4.9)QT(-9.78)LGNDMLMNT(-106.2)PR 0 0 1 0 Q9BVW5 Q9BVW5 Q9BVW5 TIPIN TIMELESS-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.044067382813 3 695.655002 2083.94318 39987.1122330787 2.033 0.0014143 109810 76.39 109810 76.392 772.045448123062 94.08 0.46008 94.08 93.793 94.253 0 32 15 3 0.62326108703489 0.000777573935539641 0.0252774695066837 5.0706E-05 1 21921 111.53 86.747 4 9868400 3642.4 3088.5 3566.4 3302.7 5981.6 4117 6003.6 4124.4 3111 21099 3446.4 2918.8 3625.2 3391.2 5925.2 4130.2 6030.8 4772.5 3192.3 19962 1 1 1 1 1 1 1 1 1 1 2791 1847 2459 2597 3118 3118 3377 LLSPQQPALQR 11 Phospho (STY) _LLS(ph)PQQPALQR_ LLS(1)PQQPALQR LLS(159.58)PQQPALQR 0 0 1 0 Q14814 Q14814 Q14814 MEF2D Myocyte-specific enhancer factor 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.430725097656 2 665.847577 1329.6806 35114.4691044754 1.7052 0.0011354 172080 114.58 172080 114.58 780.427728954813 67.211 0.69362 67.211 66.836 67.53 0 67 23 4 0.902537328422768 0.00287640827836906 0.102947466712236 6.2122E-07 1 15761 159.58 119.48 1 30993000 30380 12772 30775 13749 12049 29009 11733 17985 14521 27602 28748 12071 30736 14303 13331 28310 12035 19299 14209 26407 1 1 1 1 1 1 1 1 1 1 2792 1029 2460 2598 3119 3119 1762 LLSPRPSLLTPTGDPR 16 Phospho (STY) _LLS(ph)PRPSLLTPTGDPR_ LLS(0.902)PRPS(0.057)LLT(0.04)PTGDPR LLS(11.99)PRPS(-11.99)LLT(-13.48)PT(-35.09)GDPR 0 0 1 1 Q9Y618 Q9Y618 Q9Y618 NCOR2 Nuclear receptor corepressor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.375732421875 3 600.652026 1798.93425 38952.744497845 1.398 0.00083969 127180 76.389 127180 76.389 677.37539516855 81.276 0.66309 81.276 80.959 81.622 0 74 22 4 0.910044291248256 0.00332061065835774 0.0636948563646291 0.0042576 1 18985 89.859 58.987 4 26889000 9295.1 8511.7 8609.2 10073 6674.4 9475.8 7253.8 8899.7 8106.9 8162.5 8792.9 8049.6 8685.8 10238 6896.5 9532.9 7379.3 9195.3 7962.9 7892 1 1 1 1 1 1 1 1 1 1 2793 2306 2461 2599 3120 3120 4251 LLSSNEDDANILSSPTDR 18 Phospho (STY) _LLS(ph)SNEDDANILSSPTDR_ LLS(0.838)S(0.162)NEDDANILSSPTDR LLS(7.15)S(-7.15)NEDDANILS(-170.84)S(-176.61)PT(-184.66)DR 0 0 1 0 O75448 O75448 O75448 MED24 Mediator of RNA polymerase II transcription subunit 24 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.691345214844 3 676.303679 2025.88921 35761.0541014467 1.8881 0.0012769 112950 76.387 112950 76.388 753.025277120521 82.086 0.85966 82.086 81.795 82.655 0 61 29 3 0.918336460943141 0.00379984465638289 0.13585154391232 3.2725E-11 1 19190 199.6 171.4 5 15296000 5574.9 4536.9 5549.7 3660.9 6394.1 6073.3 6649.5 5539.8 5195.9 12298 5275.1 4280.8 5600.5 3851.1 6441.1 5996.4 6716.6 5948 5188.5 11708 1 1 1 1 1 1 1 1 1 1 2794 187 2462 2600 3121 3121 326 LLSSSLTADCSLR 13 Phospho (STY) _LLSSS(ph)LTADCSLR_ LLS(0.001)S(0.08)S(0.915)LT(0.004)ADCSLR LLS(-32.32)S(-10.59)S(10.59)LT(-23.3)ADCS(-73.07)LR 0 0 1 0 Q147X3 Q147X3 Q147X3 NAA30 N-alpha-acetyltransferase 30 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.429809570313 2 751.849656 1501.68476 32411.1698631934 1.3215 0.00099354 152400 114.58 152400 114.58 866.431380287961 81.179 0.43193 81.179 80.959 81.391 0 31 14 3 0.677483109055466 0.00118283986251356 0.0490043588214734 4.2439E-07 1 18992 161.49 131.16 5 13046000 10052 10298 8389.9 9376.6 19229 8932.2 19639 13891 8791.7 19541 9505.5 9723.3 8677.2 9676.8 18869 9072 19674 14330 9134.9 18721 1 1 1 1 1 1 1 1 1 1 2795 1028 2463 2601 3122 3122 1760 LLSTKGDTLDVVLLEAR 17 Phospho (STY) _LLS(ph)TKGDTLDVVLLEAR_ LLS(0.981)T(0.019)KGDTLDVVLLEAR LLS(17.07)T(-17.07)KGDT(-39.17)LDVVLLEAR 0 0 1 1 Q5VWG9 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.787231445313 3 641.678129 1922.01256 36125.5680403422 2.0693 0.0013278 238090 152.78 238090 152.78 794.788237682371 100.52 0.14133 100.52 100.45 100.59 0 12 4 4 0.91340863451661 0.00715547032975429 0.162984540889359 6.9294E-05 1 23512 112.28 90.722 3 47193000 18150 10640 22359 9433.8 12975 21381 14055 19148 9930.7 58329 17190 10045 22159 9951.9 13733 20980 14142 21051 9973.5 55367 1 1 1 1 1 1 1 1 1 1 2796 1210 2464 2602 3123 3123 2125 LLSVKGSPK 9 Phospho (STY) _LLSVKGS(ph)PK_ LLS(0.007)VKGS(0.993)PK LLS(-21.67)VKGS(21.67)PK 0 0 1 1 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 566.018005371094 3 336.854492 1007.54165 41884.9874425592 2.246 0.00075659 680300 229.16 680300 229.16 566.017233584605 67.437 0.6459 67.437 67.119 67.765 -1.4211E-14 65 21 4 0.912853225148643 0.00694848767174995 0.305755983690211 0.011046 1 15818 65.219 32.721 2 30221000 19594 16001 19310 15798 22693 19330 21543 19629 16837 2302.2 18540 15115 19499 16290 22809 19226 21855 19748 16813 2622.1 1 1 1 1 1 1 1 1 1 1 2797 1756 2465 2603 3124 3124 3230 LLVDVDESTLSPEEQK 16 Unmodified _LLVDVDESTLSPEEQK_ 0 0 0 0 O75533 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.080139160156 3 601.30704 1800.89929 34939.0482445937 1.4371 0.00086413 254070 152.77 254070 152.78 754.082051427256 87.678 0.34958 87.678 87.47 87.819 1.4211E-14 25 11 3 0.823364259061378 0.00135577475288789 0.013485552579897 2.5005E-07 1 20458 162.37 137.32 1 8227000 6949.4 6187.3 6329.1 5463 5410.8 6113.1 6689.4 6536.1 5027.8 13726 6573.6 5840.8 6399.9 5663.9 5561.7 6129.6 6702.4 6953.4 5031.4 13076 1 1 1 1 1 1 1 1 1 1 2798 190 2466 2604 3125 3125 LMELHGEGSSSGK 13 Phospho (STY) _LMELHGEGS(ph)SSGK_ LMELHGEGS(0.792)S(0.197)S(0.01)GK LMELHGEGS(6.04)S(-6.04)S(-18.82)GK 0 0 1 0 P61247 P61247 P61247 RPS3A 40S ribosomal protein S3a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 623.978332519531 3 471.202292 1410.58505 39768.6667961193 1.6264 0.00076635 324230 152.78 324230 152.78 624.313593009602 60.933 1.0498 60.933 60.252 61.302 0 54 35 2 0.907994195865146 0.000971392975657868 0.0165449391168288 0.0035791 1 14335 91.401 57.559 3 18456000 11000 7417.5 9552 8584.8 7877.4 12246 9778.7 11201 8260.9 3525.7 10403 7013.7 9684.7 8802.2 8118.3 12105 9821 11382 8215.4 3579.1 1 1 1 1 1 1 1 1 1 1 2799 749 2467 2605 3126 3126 1235 LMGSPVA 7 Phospho (STY) _LMGS(ph)PVA_ LMGS(1)PVA LMGS(54.16)PVA 0 0 1 0 Q96IZ7 Q96IZ7 Q96IZ7 RSRC1 Serine/Arginine-related protein 53 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 492.245635986328 2 377.66389 753.313227 45268.3143072156 1.1279 0.00042597 303390 114.58 303400 114.58 492.24513263284 72.693 0.73136 72.693 72.311 73.042 -1.4211E-14 58 24 3 0.989504664542695 0.000944354457691549 0.035924386769868 0.04407 1 17034 54.157 52.716 1 11829000 3827.9 3339.7 4092.3 4411.1 3154.3 4212.4 3398.2 3982.7 4607.8 1386.9 3623.1 3161 4094.5 4460.6 3261 4230.9 3480.5 4045.7 4495.2 1398.1 1 1 1 1 1 1 1 1 1 1 2800 1694 2468 2606 3127 3127 3111 LMIEMDGTENK 11 Unmodified _LMIEMDGTENK_ 0 0 0 0 P06733 P06733 P06733 ENO1 Alpha-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.309265136719 3 427.533551 1279.57882 41103.8767079271 1.7096 0.00073093 357340 152.77 357340 152.78 580.642882312869 78.521 0.60393 78.521 78.261 78.865 0 60 20 4 0.972905047556766 0.00303511804215658 0.0536740402653743 3.6432E-10 1 18401 182.28 152.08 1 12877000 10152 11078 10002 10691 10831 9208.2 11319 11137 11179 2049.8 9605.9 10463 10091 10977 10949 9324.1 11495 11158 11037 2187.9 1 1 1 1 1 1 1 1 1 1 2801 314 2469 2607 3128 3128 LMPVSLSVQSPAALTAEK 18 Phospho (STY) _LMPVSLSVQS(ph)PAALTAEK_ LMPVSLSVQS(1)PAALTAEK LMPVS(-80.82)LS(-61.49)VQS(61.49)PAALT(-102.01)AEK 0 0 1 0 P54198 P54198 P54198 HIRA Protein HIRA MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.104553222656 3 641.328332 1920.96317 35328.9824904009 1.9643 0.0012597 238220 152.78 238220 152.78 794.104109578562 99.989 0.13744 99.989 99.92 100.06 0 14 4 4 0.807469211817678 0.00187168642060916 0.0434215556356171 5.7778E-11 1 23315 189.07 161.86 4 56232000 8399.1 26115 8860 21598 9563.3 10615 10324 16229 24883 33988 7949.4 24644 8905.1 22276 9687.9 11264 10871 17086 23934 32380 1 1 1 1 1 1 1 1 1 1 2802 708 2470 2608 3129 3129 1187 LMTGDTYTAHAGAK 14 Phospho (STY) _LMTGDTY(ph)TAHAGAK_ LMTGDT(0.001)Y(0.999)TAHAGAK LMT(-39.43)GDT(-29.09)Y(29.09)T(-41.6)AHAGAK 0 0 1 0 P42684;P00519 P42684;P00519 P42684 ABL2;ABL1 Abelson tyrosine-protein kinase 2;Tyrosine-protein kinase ABL1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.333312988281 3 506.221575 1515.64289 38270.6992234866 1.8515 0.00093729 301790 152.77 301800 152.78 658.99695476359 51.471 0.4631 51.471 51.255 51.718 -7.1054E-15 49 15 4 0.94339677118161 0.0040725703130684 0.0203914774067776 1.3592E-07 1 11959 170.56 140.07 4 37531000 8332.3 35352 8642.2 35731 8059.2 10463 7332.4 17188 39097 6350 7885.6 33398 8675.9 36258 8232.6 11712 8368.5 17171 37230 6377.1 1 1 1 1 1 1 1 1 1 1 2803 590;281 2471 2609 3130 3130 4866 LNASPAAR 8 Phospho (STY) _LNAS(ph)PAAR_ LNAS(1)PAAR LNAS(56.94)PAAR 0 0 1 0 Q9UGU0 Q9UGU0 Q9UGU0 TCF20 Transcription factor 20 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 554.789733886719 2 440.207842 878.401131 41675.8295709757 1.0121 0.00044552 260290 114.58 260290 114.58 554.789201315363 36.676 0.67319 36.676 36.428 37.101 0 36 22 2 0.765010473041538 0.00216747792300805 0.0358367271502786 0.036841 1 8278 56.936 7.9382 1 36996000 32553 31719 29873 27532 28837 35760 26390 27637 31114 4819.2 30794 29940 30217 28657 29295 35384 27110 28181 30500 5177.4 1 1 1 1 1 1 1 1 1 1 2804 2140 2472 2610 3131 3131 3852 LNDSPTLK 8 Phospho (STY) _LNDS(ph)PTLK_ LNDS(0.97)PT(0.03)LK LNDS(15.03)PT(-15.03)LK 0 0 1 0 Q9BYW2 Q9BYW2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.392639160156 2 484.22844 966.442327 38129.543566439 2.0572 0.00099617 473250 229.16 473260 229.16 713.391874590153 59.63 0.54407 59.63 59.307 59.851 0 48 18 4 0.755340203390723 0.00203536830703762 0.123455293906209 0.012419 1 13951 81.642 47.681 2 29777000 25481 27342 26955 28873 22895 25597 22942 25801 31849 7802.3 24117 25837 27008 29500 23483 25821 23595 26107 31048 7943.9 1 1 1 1 1 1 1 1 1 1 2805 1872 2473 2611 3132 3132 3408 LNFDMTASPK 10 Oxidation (M),Phospho (STY) _LNFDM(ox)TAS(ph)PK_ LNFDM(1)TASPK LNFDMT(0.359)AS(0.641)PK LNFDM(66.28)TASPK LNFDMT(-2.52)AS(2.52)PK 0 1 1 0 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.949157714844 3 407.173673 1218.49919 41726.6775388124 1.8592 0.00075703 375210 152.77 375210 152.78 559.948557188396 69.485 0.63688 69.485 69.15 69.787 0 48 21 3 0.69369255290547 0.00135052022233183 0.0307675446730787 0.011443 1 16318 66.285 42.298 2 9886900 7774.1 8434.3 7571.6 7312.1 5840.1 8652.5 4326 6143.5 9380 4393.1 7355.5 7961.2 7611.7 7597.8 6012.1 8589.8 4614.6 6392 9040.9 4278.8 1 1 1 1 1 1 1 1 1 1 2806 2190 2474 2612 3133 3133 230 3964 LNFDMTASPK 10 Phospho (STY) _LNFDMTAS(ph)PK_ LNFDMT(0.006)AS(0.994)PK LNFDMT(-21.93)AS(21.93)PK 0 0 1 0 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 831.422790527344 2 602.259414 1202.50428 33485.7061619769 2.1394 0.0012885 380510 229.16 380510 229.16 831.42186691264 83.441 0.8702 83.441 83.057 83.927 0 93 29 5 0.977364832809331 0.00461663138798342 0.149019917904611 5.4845E-07 1 19496 170.95 103.87 2 37825000 21384 38072 23282 35906 27788 22402 29950 29189 38346 18779 20242 35953 23394 36782 27972 23178 30613 29581 37480 18358 1 1 1 1 1 1 1 1 1 1 2807 2190 2474 2613 3134 3134 3964 LNGPGENVSEDEAQSSNQR 19 Phospho (STY) _LNGPGENVS(ph)EDEAQSSNQR_ LNGPGENVS(1)EDEAQSSNQR LNGPGENVS(106.76)EDEAQS(-106.76)S(-113.17)NQR 0 0 1 0 Q659C4 Q659C4 Q659C4 LARP1B La-related protein 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 781.014770507813 3 704.293954 2109.86003 35852.3252370413 1.5723 0.0011074 108460 76.386 108460 76.388 781.014987350892 44.154 0.43725 44.154 43.934 44.371 0 34 14 3 0.651598121813767 0.000972283118564907 0.0132390135383647 1.231E-07 1 10151 153.88 138.72 3 12317000 13012 13435 12754 14877 14155 14011 14730 14187 16482 10899 12312 12700 12875 15173 14292 14105 15014 14552 16189 10591 1 1 1 1 1 1 1 1 1 1 2808 1222 2475 2614 3135 3135 2153 LNHVAAGLVSPSLK 14 Phospho (STY) _LNHVAAGLVS(ph)PSLK_ LNHVAAGLVS(0.999)PS(0.001)LK LNHVAAGLVS(29.13)PS(-29.13)LK 0 0 1 0 Q05519 Q05519 Q05519 SRSF11 Serine/arginine-rich splicing factor 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.708435058594 3 495.932353 1484.77523 38878.3671493398 1.8777 0.00093123 308060 152.78 308060 152.78 648.707861732351 76.727 0.95086 76.727 76.359 77.31 -1.4211E-14 115 32 6 0.937925318893587 0.0108515891212406 0.238869360578807 5.656E-07 1 17963 152.13 126.69 2 157210000 12894 22654 12963 20773 13238 12636 15518 14597 23817 6062.4 12201 21389 13057 21313 13458 13065 15914 14749 23148 6046.3 1 1 1 1 1 1 1 1 1 1 2809 870 2476 2615 3136 3136 1413 LNLGTDSDSSPQK 13 Phospho (STY) _LNLGTDSDS(ph)SPQK_ LNLGTDSDS(0.5)S(0.5)PQK LNLGT(-78.17)DS(-31.79)DS(0)S(0)PQK 0 0 1 0 Q16512 Q16512 Q16512 PKN1 Serine/threonine-protein kinase N1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 950.483215332031 2 721.313961 1440.61337 31554.3363660243 2.5209 0.0018184 317700 229.16 317710 229.17 950.476505860847 63.041 0.75899 63.041 62.761 63.52 0 71 25 5 0.725552450651614 0.00161713669548351 0.0336610645748287 1.1409E-15 1 14790 218.2 184 4 21430000 18007 14558 17991 14431 12917 16395 13359 17499 13446 63463 17039 13752 18055 14857 13414 16479 13579 19422 13264 60163 1 1 1 1 1 1 1 1 1 1 2810 1102 2477 2616 3137 3137 1920;1921 LNLSCIHSPVVNELMR 16 Phospho (STY) _LNLSCIHS(ph)PVVNELMR_ LNLS(0.038)CIHS(0.962)PVVNELMR LNLS(-13.99)CIHS(13.99)PVVNELMR 0 0 1 0 Q9Y2X3 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.036743164063 3 654.649411 1960.9264 40551.3380423225 1.2608 0.00082537 116690 76.388 116690 76.389 731.03722997026 91.697 0.40094 91.697 91.509 91.91 0 25 13 3 0.604796345744756 0.00101505164010486 0.0216305315482572 0.012036 1 21363 68.569 43.25 2 6587300 3831.7 3960.8 4101.1 4071.9 4329.3 4159.5 4885.3 4226.9 4261.5 19950 3626.8 3742.2 4117.9 4175.5 4387.2 4203.7 4929 4838.4 4231.3 18883 1 1 1 1 1 1 1 1 1 1 2811 2258 2478 2617 3138 3138 4185 LNLTLSPAK 9 Phospho (STY) _LNLTLS(ph)PAK_ LNLT(0.002)LS(0.998)PAK LNLT(-27.29)LS(27.29)PAK 0 0 1 0 Q9UKL3 Q9UKL3 Q9UKL3 CASP8AP2 CASP8-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.939514160156 2 518.775557 1035.53656 36717.8571944093 2.173 0.0011273 441740 229.16 441740 229.16 747.938343260783 83.461 0.81079 83.461 83.233 84.044 0 50 27 3 0.868177256968695 0.00264405096730484 0.167909317238862 0.00051567 1 19517 110.74 83.954 2 15253000 26858 17151 23083 16069 10384 24909 10614 18197 19270 19948 25400 16196 23305 16707 11299 24526 11030 19114 18646 19205 1 1 1 1 1 1 1 1 1 1 2812 2176 2479 2618 3139 3139 3924 LNLTSPK 7 Phospho (STY) _LNLTS(ph)PK_ LNLT(0.003)S(0.997)PK LNLT(-25.16)S(25.16)PK 0 0 1 0 Q8IWZ3 Q8IWZ3 Q8IWZ3 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.878662109375 2 426.714969 851.415384 39070.3505400603 2.4543 0.0010473 537040 229.16 537040 229.16 655.877794857129 66.892 0.75461 66.892 66.544 67.299 0 91 25 5 0.898224653314453 0.00825420886610912 0.621545911316164 5.1838E-05 1 15685 141.29 46.489 2 99958000 34828 66624 35459 60637 19125 31152 21297 39540 68855 7460.7 32958 62903 35473 62151 20449 32661 22877 39561 65922 7940.2 1 1 1 1 1 1 1 1 1 1 2813 1420 2480 2619 3140 3140 2586 LNLTSPKR 8 Phospho (STY) _LNLTS(ph)PKR_ LNLT(0.006)S(0.994)PKR LNLT(-22.52)S(22.52)PKR 0 0 1 1 Q8IWZ3 Q8IWZ3 Q8IWZ3 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 489.621551513672 3 336.846108 1007.5165 45066.4296894341 0.53619 0.00018062 453540 152.77 453540 152.77 489.621438153088 55.692 0.75996 55.692 55.279 56.039 0 66 25 4 0.994424424490547 0.00517415097660224 0.124448952169422 0.0077561 1 13003 83.869 46.313 2 44716000 23268 42239 24318 43849 16739 22689 17777 29103 48734 1296.5 22022 39911 24335 44584 17478 23769 18893 28983 46773 1894.4 1 1 1 1 1 1 1 1 1 1 2814 1420 2481 2620 3141 3141 2586 LNPPPAPPARSPTTELSSK 19 Phospho (STY) _LNPPPAPPARS(ph)PTTELSSK_ LNPPPAPPARS(0.834)PT(0.067)T(0.067)ELS(0.015)S(0.017)K LNPPPAPPARS(10.94)PT(-10.94)T(-10.94)ELS(-17.49)S(-16.85)K 0 0 1 1 A6NGB9 A6NGB9 A6NGB9 WIPF3 WAS/WASL-interacting protein family member 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.791381835938 3 680.6769 2039.00887 34513.9841600827 1.9518 0.0013286 224450 152.78 224450 152.78 833.451992995443 61.871 0.53108 61.871 61.621 62.152 7.1054E-15 38 17 3 0.577740694933166 0.000261010011980792 0.00442246386134587 0.029559 1 14558 53.747 24.856 5 9458100 8205.4 16490 8032.5 15911 12766 8211.2 14795 12969 19165 18875 7763.7 15574 8160 16248 12709 8669.3 15083 13393 18725 18073 1 1 1 1 1 1 1 1 1 1 2815 9 2482 2621 3142 3142 20 LNQPGTPTR 9 Phospho (STY) _LNQPGT(ph)PTR_ LNQPGT(1)PTR LNQPGT(39.84)PT(-39.84)R 0 0 1 0 P36507 P36507 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.832397460938 2 532.250238 1062.48592 38588.2121796261 0.98814 0.00052594 215280 114.58 215280 114.58 646.83200361112 35.805 0.78541 35.805 35.475 36.26 -7.1054E-15 88 26 5 0.962435841517903 0.0114901780215588 0.259388293385596 6.8425E-06 1 8017 153.11 114.32 2 776010000 56975 71643 54726 62715 60265 53257 56474 59972 68134 3637.9 53904 67628 55296 64787 60788 53895 57987 60005 66734 4813.5 1 1 1 1 1 1 1 1 1 1 2816 554 2483 2622 3143 3143 4454 LNQSPSLAPVKR 12 Phospho (STY) _LNQS(ph)PSLAPVKR_ LNQS(0.615)PS(0.385)LAPVKR LNQS(2.03)PS(-2.03)LAPVKR 0 0 1 1 Q9H2P0 Q9H2P0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.689819335938 3 463.913181 1388.71771 40392.4425342624 1.4366 0.00066645 329320 152.78 329320 152.78 616.688943375469 56.991 0.52225 56.991 56.783 57.305 0 54 17 4 0.865079178229512 0.00290290159311406 0.0206324062450889 0.0066218 1 13333 84.375 63.422 2 28373000 17589 15816 15340 15970 18513 16703 19241 18197 18784 3405.7 16635 14941 15616 16400 18610 16734 19538 18297 18553 3628 1 1 1 1 1 1 1 1 1 1 2817 1921 2484 2623 3144 3144 3487 LNQVCFDDDGTSSPQDR 17 Unmodified _LNQVCFDDDGTSSPQDR_ 0 0 0 0 Q8N1F7 Q8N1F7 Q8N1F7 NUP93 Nuclear pore complex protein Nup93 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1091.99951171875 2 977.415793 1952.81703 30050.0558922885 1.984 0.0019392 117230 114.58 117230 114.58 1091.99751396003 61.239 0.44075 61.239 60.979 61.42 0 54 14 5 0.987821104776058 0.00102138463706992 0.0334416949406457 8.2605E-53 1 14329 366.06 304.72 1 35034000 8621.5 10855 8640.8 10713 8091.3 8765.2 7243.5 8984.1 11876 8264.4 8158.2 10254 8691.4 10977 8235.9 8891 7540.8 9252.2 11521 7989.8 1 1 1 1 1 1 1 1 1 1 2818 1453 2485 2624 3145 3145 LNSEASPSR 9 Phospho (STY) _LNSEAS(ph)PSR_ LNSEAS(1)PSR LNS(-49.68)EAS(35.75)PS(-35.75)R 0 0 1 0 Q13111 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.305908203125 2 520.724053 1039.43355 38758.9629084713 1.6166 0.0008418 220040 114.58 220040 114.58 635.305276374438 33.086 0.48937 33.086 32.794 33.284 0 38 16 3 0.965460511459781 0.00314739498965273 0.102801272542543 3.2304E-05 1 7393 137.4 94.679 3 30607000 17525 17928 18627 17587 11518 18585 12167 17112 19793 2859.5 16587 16934 18607 18094 12125 18571 12563 17307 19206 3088.6 1 1 1 1 1 1 1 1 1 1 2819 923 2486 2625 3146 3146 1521 LNSSENGEDR 10 Phospho (STY) _LNS(ph)SENGEDR_ LNS(0.5)S(0.5)ENGEDR LNS(0)S(0)ENGEDR 0 0 1 0 Q7L4I2 Q7L4I2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 715.311279296875 2 600.730064 1199.44557 37488.1588504962 1.9761 0.0011871 190740 114.58 190740 114.58 715.311049475749 31.577 0.55412 31.577 31.386 31.94 0 41 18 3 0.717552738784956 0.00126142613758642 0.0149442655513494 1.7705E-06 1 7067 159.6 115.4 2 15402000 21434 21531 21567 23415 12179 21544 11683 19066 23999 3621.3 20283 20350 21594 23896 12918 21654 12254 19329 23157 3851.2 1 1 1 1 1 1 1 1 1 1 2820 1318 2487 2626 3147 3147 2362;2363 LNTSDFQK 8 Phospho (STY) _LNT(ph)SDFQK_ LNT(0.919)S(0.081)DFQK LNT(10.56)S(-10.56)DFQK 0 0 1 0 Q96B36 Q96B36 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.886901855469 2 516.723522 1031.43249 36804.4050954407 1.8613 0.00096177 443490 229.16 443490 229.16 745.88653727335 64.65 0.40731 64.65 64.415 64.822 0 23 13 2 0.93679900751373 0.00022030601702307 0.00805286580387117 0.025905 1 15194 66.538 43.659 2 6251800 17537 9735.2 17574 10546 12277 18110 12941 12988 10699 13207 16594 9201.1 17630 10901 12778 17776 13079 13625 10651 12737 1 1 1 1 1 1 1 1 1 1 2821 1653 2488 2627 3148 3148 4723 LNTVASPK 8 Phospho (STY) _LNTVAS(ph)PK_ LNT(0.001)VAS(0.999)PK LNT(-32)VAS(32)PK 0 0 1 0 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.390441894531 2 455.2257 908.436848 38459.9836589658 2.6556 0.0012089 503410 229.16 503410 229.16 684.388437043843 53.651 0.47032 53.651 53.475 53.945 0 28 15 3 0.956853798155711 0.000658915313739595 0.01394667159523 0.021445 1 12497 65.232 30.7 2 7949500 24789 21579 25455 21421 19763 26050 20477 22879 21566 7254 23459 20384 25525 22079 20403 25879 20839 23291 21233 7360 1 1 1 1 1 1 1 1 1 1 2822 1756 2489 2628 3149 3149 3231 LNTVASPKDCQELASISVGSGSR 23 Phospho (STY) _LNTVAS(ph)PKDCQELASISVGSGSR_ LNT(0.002)VAS(0.998)PKDCQELASISVGSGSR LNT(-26.24)VAS(26.24)PKDCQELAS(-68.77)IS(-74.35)VGS(-95.15)GS(-94.35)R 0 0 1 1 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 972.500915527344 3 819.387749 2455.14142 31623.4929947381 2.1887 0.0017934 186450 152.78 186450 152.78 972.497641441707 74.026 0.2877 74.026 73.839 74.127 0 19 9 3 0.956745152300935 0.00188536997897971 0.0233880066526879 3.7667E-08 1 17388 157.43 128.78 6 12508000 6060 7226.2 5587.5 7105.3 6183.4 5807.7 6505.7 6354.7 6886.1 45155 5732.6 6825.6 5661.3 7282 6244.7 5971.1 6617.2 7713.6 6778.4 42666 1 1 1 1 1 1 1 1 1 1 2823 1756 2490 2629 3150 3150 3231 LNTVASPKDCQELASISVGSGSRPSSDLQAR 31 Phospho (STY) _LNTVAS(ph)PKDCQELASISVGSGSRPSSDLQAR_ LNT(0.032)VAS(0.931)PKDCQELAS(0.006)IS(0.006)VGS(0.006)GS(0.006)RPS(0.006)S(0.007)DLQAR LNT(-14.61)VAS(14.61)PKDCQELAS(-22)IS(-22)VGS(-22)GS(-22)RPS(-21.73)S(-21.45)DLQAR 0 0 1 2 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 943.73388671875 4 828.398788 3309.56605 32652.3048821747 1.7757 0.001471 138320 114.58 138320 114.58 943.23033489453 71.626 0.55296 71.626 71.401 71.954 1.4211E-14 64 18 5 0.85870396572339 0.0020823350983239 0.0197181770221507 0.049853 1 16816 41.764 23.673 8 19147000 5685 5583.1 6057.8 5903.1 6334.5 7279.6 6735.5 7635.1 6283.8 39089 5380.8 5276 6082.6 6063.7 6417.1 7313.3 6824.5 8822.6 6219.3 36983 1 1 1 1 1 1 1 1 1 1 2824 1756 2491 2630 3151 3151 3231 LPDSPALAK 9 Phospho (STY) _LPDS(ph)PALAK_ LPDS(1)PALAK LPDS(152.7)PALAK 0 0 1 0 Q13586 Q13586 Q13586 STIM1 Stromal interaction molecule 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.410583496094 2 496.246633 990.478713 37102.6606516665 2.1702 0.0010769 461790 229.16 461800 229.16 725.4097945318 68.974 0.96198 68.974 68.527 69.489 0 74 32 3 0.986351158549987 0.00170525878796798 0.0284142620877828 5.5725E-06 1 16187 152.7 90.917 1 28569000 14897 43304 16272 42269 23482 14578 22711 29011 47947 7764.1 14101 40902 16393 43019 23417 16044 23846 28775 46239 7982.2 1 1 1 1 1 1 1 1 1 1 2825 969 2492 2631 3152 3152 1643 LPEASQSPLVLK 12 Phospho (STY) _LPEASQS(ph)PLVLK_ LPEAS(0.002)QS(0.998)PLVLK LPEAS(-27.41)QS(27.41)PLVLK 0 0 1 0 Q13330 Q13330 Q13330 MTA1 Metastasis-associated protein MTA1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 607.349487304688 3 454.574054 1360.70033 40587.7833438337 1.4957 0.00067989 336080 152.78 336090 152.78 607.349273918644 83.131 0.4982 83.131 82.914 83.412 1.4211E-14 48 16 4 0.945292955766404 0.00355178392395467 0.0170285205147152 3.6541E-07 1 19429 142.1 99.31 2 17928000 5605.5 7327.4 4203.2 7631.4 6109.2 5043.4 7284.8 7461.5 6292.5 10194 5298.9 6923.7 4338.6 7775.5 6102.8 5220.3 7331.7 7697.9 6250.9 9771.8 1 1 1 1 1 1 1 1 1 1 2826 946 2493 2632 3153 3153 1573 LPELDPRGSDEENLDSETSASTESLLEER 29 Phospho (STY) _LPELDPRGS(ph)DEENLDSETSASTESLLEER_ LPELDPRGS(1)DEENLDSETSASTESLLEER LPELDPRGS(55.79)DEENLDS(-55.79)ET(-81.97)S(-94.76)AS(-98.79)T(-97.92)ES(-108.46)LLEER 0 0 1 1 Q13459 Q13459 Q13459 MYO9B Unconventional myosin-IXb MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1176.88745117188 3 1100.15426 3297.44095 27930.4862264002 1.62 0.0017822 69436 76.39 69437 76.392 1176.87985109112 90.711 0.48303 90.711 90.364 90.847 0 70 16 6 0.796867330369149 0.0035740952541569 0.0926841379914131 3.397E-08 1 21099 169.83 139.15 7 59060000 1745 0 0 1563.7 1504.9 1422.2 1419.2 3046.4 1630 60241 1644.6 0 0 1507.9 1437.3 1565.6 1454.5 4808 1599.3 56795 1 0 0 1 1 1 1 1 1 1 2827 958 2494 2633 3154 3154 1609 LPFPIIDDR 9 Unmodified _LPFPIIDDR_ 0 0 0 0 P30041 P30041 P30041 PRDX6 Peroxiredoxin-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.885192871094 2 543.303124 1084.5917 39972.1056529328 2.0697 0.0011245 210900 114.58 210900 114.58 657.884164206504 98.175 0.37979 98.175 98.021 98.401 1.4211E-14 23 12 2 0.834843989590356 0.000960692727076653 0.0569405713021183 0.00070711 1 22799 127.02 97.683 1 3691300 3846.3 6545.5 3393 6478 5523.2 3650.1 6156.8 6460.8 6930.2 9604.8 3637.9 6183 3469.9 6610.1 5488.9 3838.2 6257.8 6661.2 6805.2 9193.6 1 1 1 1 1 1 1 1 1 1 2828 506 2495 2634 3155 3155 LPGSGAVQAASPER 14 Phospho (STY) _LPGSGAVQAAS(ph)PER_ LPGSGAVQAAS(1)PER LPGS(-81.94)GAVQAAS(81.94)PER 0 0 1 0 Q86U90 Q86U90 Q86U90 YRDC YrdC domain-containing protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 550.280456542969 3 473.892446 1418.65551 41706.189078763 1.3395 0.00063479 161190 76.388 161190 76.388 550.28007974996 52.395 0.54197 52.395 52.155 52.697 0 52 18 4 0.994017122928828 0.00203725820401445 0.0333580015148767 0.0025885 1 12201 94.61 81.409 2 23379000 11794 8771.6 11092 9263.1 8196.3 11926 8078 9503.7 9390.5 2580.7 11157 8289.1 11174 9523.9 8488.1 11809 8264.3 9704.5 9209.9 2649.9 1 1 1 1 1 1 1 1 1 1 2829 1368 2496 2635 3156 3156 2480 LPGSYDSTSSDSLYPR 16 Phospho (STY) _LPGSYDST(ph)SSDSLYPR_ LPGSYDS(0.003)T(0.926)S(0.071)SDSLYPR LPGS(-65.76)Y(-170.3)DS(-25.49)T(11.16)S(-11.16)S(-41.16)DS(-73.09)LY(-206.47)PR 0 0 1 0 O43561 O43561 O43561 LAT Linker for activation of T-cells family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1027.47241210938 2 912.888021 1823.76149 30908.5820545578 2.0058 0.001831 125520 114.58 125520 114.58 1027.46934302993 75.07 0.97702 75.07 74.54 75.517 0 105 33 4 0.943618786808015 0.00114306162236934 0.0270787845215143 6.2948E-23 2 17574 279.29 230.14 8 41271000 5466.4 6102.5 6704.8 6187.3 24673 6056.9 30853 15902 5779.1 37204 5177.2 5765.3 6911.8 6345.7 24041 6270.4 30423 16690 6765.7 35400 2 2 2 2 2 2 2 2 2 2 2830 117 2497 2636 3157;3158 3158 4329 LPLCSLPGEPGNGPDQQLQRSPPEFQ 26 Phospho (STY) _LPLCSLPGEPGNGPDQQLQRS(ph)PPEFQ_ LPLCSLPGEPGNGPDQQLQRS(1)PPEFQ LPLCS(-188.16)LPGEPGNGPDQQLQRS(188.16)PPEFQ 0 0 1 1 Q96GX2 Q96GX2 Q96GX2 ATXN7L3B Putative ataxin-7-like protein 3B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1057.84655761719 3 981.123184 2940.34772 30311.9083527982 1.8915 0.0018557 77857 76.387 77859 76.389 1057.84335310496 94.197 0.57948 94.197 93.849 94.429 1.4211E-14 63 19 4 0.962261508675921 0.00316623638462557 0.0555558892400435 5.369E-18 1 21903 236.28 214.16 2 9274200 2462.3 3088.2 2314.4 3441.2 2790.4 2144.6 2732.5 3410.7 3427.3 27299 2329.4 2919.3 2344.7 3491 2803.5 2274.8 2803.3 4194.7 3352.2 25784 1 1 1 1 1 1 1 1 1 1 2831 1686 2498 2637 3159 3159 3101 LPLLPPESPGPLR 13 Phospho (STY) _LPLLPPES(ph)PGPLR_ LPLLPPES(1)PGPLR LPLLPPES(103.79)PGPLR 0 0 1 0 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 565.653564453125 3 489.265332 1464.77417 42902.5020507187 1.3451 0.0006581 156130 76.388 156130 76.389 565.987483116697 99.516 0.54318 99.516 99.236 99.78 -1.4211E-14 41 18 3 0.96449062770434 0.00184272974461974 0.0921398433354762 0.00015952 1 23107 103.79 65.425 1 10756000 2120.4 1946.7 1930.1 1914.6 1465.5 2012.5 1605 2061.2 2168.2 4717.8 2005.8 1838.8 1949 1969.4 1517.1 2022.3 1642.4 2207.8 2115.5 4490.1 1 1 1 1 1 1 1 1 1 1 2832 994 2499 2638 3160 3160 1689 LPLQLDDAVRPEAEGEEEGR 20 Unmodified _LPLQLDDAVRPEAEGEEEGR_ 0 0 0 1 P14868 P14868 P14868 DARS Aspartate--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.424926757813 3 741.701111 2222.0815 34347.1635631989 2.094 0.0015531 102990 76.388 102990 76.39 818.423871053147 77.269 0.66209 77.269 76.969 77.632 0 88 22 5 0.978213817991741 0.0132244132586566 0.0868662698012465 3.8134E-16 1 18094 237.45 219.96 1 72689000 14835 12949 12722 13310 13794 12832 16177 14280 14518 14854 14029 12235 12949 13637 13967 12929 16307 14715 14395 14317 1 1 1 1 1 1 1 1 1 1 2833 392 2500 2639 3161 3161 LPLVPESPRR 10 Phospho (STY) _LPLVPES(ph)PRR_ LPLVPES(1)PRR LPLVPES(66.1)PRR 0 0 1 1 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 491.61083984375 3 415.223467 1242.64857 43240.0316889064 0.98338 0.00040832 183970 76.388 183970 76.388 491.611180149772 66.609 1.1586 66.609 66.14 67.299 0 147 39 5 0.86111886226247 0.00226186979188224 0.0426030995328598 0.012752 1 15574 66.104 38.44 1 243340000 5688.6 6663 6244.8 7021.5 5373.5 5963.1 5588.7 5691.3 7563.6 1423.1 5385 6296.3 6245.9 7170.5 5509.4 6023.7 5732.6 5762.2 7379.3 1471.8 1 1 1 1 1 1 1 1 1 1 2834 1387 2501 2640 3162 3162 2518 LPNNSSRPSTPTINVLESK 19 Phospho (STY) _LPNNSSRPST(ph)PTINVLESK_ LPNNS(0.003)S(0.002)RPS(0.16)T(0.833)PT(0.002)INVLESK LPNNS(-24.27)S(-26.02)RPS(-7.16)T(7.16)PT(-26.56)INVLES(-78.47)K 0 0 1 1 Q15910 Q15910 Q15910 EZH2 Histone-lysine N-methyltransferase EZH2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.134582519531 3 712.022847 2133.04671 33474.6144348341 2.2832 0.0016257 214570 152.78 214570 152.78 865.13254216843 74.264 0.52534 74.264 73.983 74.509 0 68 17 5 0.990030924527099 0.0061221339570236 0.133312404719836 3.5943E-05 1 17414 131.26 108.89 6 54047000 14873 17791 13777 16303 14936 15291 16175 17604 17966 18750 14069 16798 13952 16814 15108 15436 16454 18134 17651 18063 1 1 1 1 1 1 1 1 1 1 2835 1098 2502 2641 3163 3163 1900;1901;1902;4581 LPNNSSRPSTPTINVLESK 19 Phospho (STY) _LPNNS(ph)SRPSTPTINVLESK_ LPNNS(0.453)S(0.453)RPS(0.045)T(0.045)PT(0.004)INVLESK LPNNS(0)S(0)RPS(-10.03)T(-10.03)PT(-20.77)INVLES(-57.71)K 0 0 1 1 Q15910 Q15910 Q15910 EZH2 Histone-lysine N-methyltransferase EZH2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.136352539063 3 712.022847 2133.04671 35540.2904601084 2.0935 0.0014906 214570 152.78 214570 152.78 864.797908662541 77.274 0.28259 77.274 77.085 77.368 1.4211E-14 21 9 3 0.813949851184831 0.00164518686592313 0.0199865888112988 0.012347 1 18112 67.827 51.943 6 6983100 8527.4 6782.4 8333.4 6629.4 8675.1 8012.9 9437.3 9896.8 7929.8 18270 8068.4 6406.3 8408 6838.4 8792.7 8028 9528.5 10405 7888.3 17433 1 1 1 1 1 1 1 1 1 1 2836 1098 2502 2641 3164 3164 1900;1901;1902;4581 LPNNSSRPSTPTINVLESK 19 2 Phospho (STY) _LPNNSS(ph)RPST(ph)PTINVLESK_ LPNNS(0.446)S(0.523)RPS(0.084)T(0.831)PT(0.116)INVLESK LPNNS(-0.73)S(0.73)RPS(-11.64)T(8.78)PT(-8.78)INVLES(-45.17)K 0 0 2 1 Q15910 Q15910 Q15910 EZH2 Histone-lysine N-methyltransferase EZH2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 891.790649414063 3 738.678291 2213.01304 33616.0522278956 1.5819 0.0011685 206820 152.78 206830 152.78 891.789076683721 80.211 0.67906 80.211 79.959 80.638 0 67 22 4 0.943978906920093 0.00293888265252545 0.0199346877371684 0.026446 1 18758 74.665 55.893 15 28625000 11348 7829.6 11094 7603.4 9681.3 9652.8 10438 10221 8040.2 14984 10737 7395.1 11170 7853.7 9916.4 9619.4 10523 10682 8035 14346 1 1 1 1 1 1 1 1 1 1 2837 1098 2502 2642 3165 3165 1900;1901;1902;4581 LPPKVESLESLYFTPIPAR 19 Phospho (STY) _LPPKVES(ph)LESLYFTPIPAR_ LPPKVES(0.961)LES(0.039)LYFTPIPAR LPPKVES(13.93)LES(-13.93)LY(-60.94)FT(-36.19)PIPAR 0 0 1 1 Q14980 Q14980 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 899.502502441406 3 746.392101 2236.15447 33521.8712832023 2.1704 0.00162 204680 152.77 204690 152.78 899.501013307939 100.37 0.27779 100.37 100.26 100.53 -1.4211E-14 32 9 5 0.954738704752275 0.00651395183653183 0.126948338551372 4.6824E-08 1 23446 167.51 147.48 4 51048000 17594 24526 15370 22017 72252 18960 71912 45661 25997 121350 16640 23155 16300 22711 69914 19704 71960 48423 27598 115320 1 1 1 1 1 1 1 1 1 1 2838 1036 2503 2643 3166 3166 1790 LPPQSCLLLPPTPVR 15 Phospho (STY) _LPPQSCLLLPPT(ph)PVR_ LPPQSCLLLPPT(1)PVR LPPQS(-43.79)CLLLPPT(43.79)PVR 0 0 1 0 O75691 O75691 O75691 UTP20 Small subunit processome component 20 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.367370605469 3 589.979086 1766.91543 40922.2133980208 2.0512 0.0012102 129480 76.388 129480 76.389 666.366476930033 92.933 0.81065 92.933 92.31 93.12 0 57 27 3 0.915289769333176 0.000379429794315254 0.00869647834240549 0.020855 1 21680 65.149 37.486 2 3593900 2337.5 2298.7 2474.7 2433.6 2680.1 2782.1 2150.4 2531.8 2466.8 10119 2212.4 2172.3 2485.5 2496.2 2700.4 2789 2223 2854.2 2420.6 9587.1 1 1 1 1 1 1 1 1 1 1 2839 200 2504 2644 3167 3167 4344 LPQTSDDEKKDF 12 Unmodified _LPQTSDDEKKDF_ 0 0 0 2 Q9GZT3 Q9GZT3 Q9GZT3 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 704.061340332031 3 474.896423 1421.66744 38223.16012221 1.5462 0.00073431 482560 229.16 482560 229.17 704.060891586718 62.471 0.40762 62.471 62.237 62.644 0 33 13 3 0.864856089445283 0.000829008847723889 0.0188038596025768 0.042087 1 14692 47.621 21.61 1 12204000 12738 13135 14300 12039 14010 13344 13097 12354 13120 6082.5 12060 12402 14304 12450 14222 13316 13376 12613 12944 6013.3 1 1 1 1 1 1 1 1 1 1 2840 1892 2505 2645 3168 3168 LPQTSDDEKKDF 12 Phospho (STY) _LPQT(ph)SDDEKKDF_ LPQT(0.672)S(0.328)DDEKKDF LPQT(3.12)S(-3.12)DDEKKDF 0 0 1 2 Q9GZT3 Q9GZT3 Q9GZT3 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.0498046875 3 501.551866 1501.63377 37852.4313284798 2.4998 0.0012538 456910 229.16 456910 229.16 730.714118145328 67.633 1.4072 67.633 67.387 68.794 0 148 47 4 0.924706931511464 0.00495543648092762 0.0474757714187537 0.046467 1 15910 62.104 40.646 2 26253000 17681 19385 17413 19142 20812 17578 28387 23451 21060 11403 16730 18311 17605 19644 21019 17784 28331 23639 21091 11280 1 1 1 1 1 1 1 1 1 1 2841 1892 2505 2646 3169 3169 4760 LPSANQGSPFK 11 Phospho (STY) _LPSANQGS(ph)PFK_ LPSANQGS(1)PFK LPS(-53.64)ANQGS(53.64)PFK 0 0 1 0 Q56NI9 Q56NI9 Q56NI9 ESCO2 N-acetyltransferase ESCO2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.966796875 3 409.191944 1224.554 41808.8100689814 1.7015 0.00069624 373360 152.77 373360 152.78 561.966432788749 67.472 0.61415 67.472 67.21 67.824 0 53 20 3 0.987134794761697 0.00246645142096575 0.08932102063516 0.00015809 1 15830 105.19 87.604 2 16038000 8828.1 6861.3 10744 6221.1 3933.5 9097.1 4706.6 7609.2 6102.4 2522.1 8360.8 6478 10626 6472.9 4406.1 8976.2 4792 7766.3 5962.1 2551 1 1 1 1 1 1 1 1 1 1 2842 1157 2506 2647 3170 3170 2007 LPSDSER 7 Phospho (STY) _LPS(ph)DSER_ LPS(0.955)DS(0.045)ER LPS(13.27)DS(-13.27)ER 0 0 1 0 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.762512207031 2 442.18149 882.348427 42277.8194148735 1.1852 0.00052409 259130 114.58 259130 114.58 556.762662277645 40.049 0.66934 40.049 39.715 40.384 -7.1054E-15 41 22 3 0.776799768467805 0.000363246862530041 0.00785009442093585 0.035801 1 9141 58.246 6.2972 2 16621000 18311 15011 17969 16398 19879 20163 19773 17382 15629 3648 17325 14188 18137 16812 20055 20014 20019 17653 15596 3837.3 1 1 1 1 1 1 1 1 1 1 2843 1756 2507 2648 3171 3171 3232 LPSGSGAASPTGSAVDIR 18 Phospho (STY) _LPSGSGAAS(ph)PTGSAVDIR_ LPSGSGAAS(1)PTGSAVDIR LPS(-77.18)GS(-63.56)GAAS(33.39)PT(-33.39)GS(-70.52)AVDIR 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.663269042969 3 574.940124 1721.79854 38529.8315728995 1.4854 0.00085402 132860 76.387 132860 76.388 651.327541113549 62.722 0.67384 62.722 62.376 63.05 0 64 20 4 0.907300710496591 0.0116565815595948 0.168094618807451 4.8284E-11 2 14724 193.06 166.92 5 61369000 30394 24733 30944 22842 18001 30917 18100 22710 23605 10317 28763 23354 30969 23699 19038 30546 18570 23409 23057 10240 2 2 2 2 2 2 2 2 2 2 2844 896 2508 2649 3172;3173 3173 1475;1476 LPSGSGAASPTGSAVDIR 18 Phospho (STY) _LPS(ph)GSGAASPTGSAVDIR_ LPS(0.993)GS(0.007)GAASPTGSAVDIR LPS(21.84)GS(-21.84)GAAS(-79.29)PT(-118.12)GS(-146.28)AVDIR 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 976.489929199219 2 861.906548 1721.79854 31831.182055405 1.231 0.001061 132940 114.58 132940 114.58 976.488372156472 64.386 0.70274 64.386 64.062 64.765 0 87 23 5 0.961471411294943 0.00112849145022887 0.0158182646592489 3.185E-53 1 15079 366.13 322.79 5 115330000 16698 5835.6 17562 6009.1 3007.8 17436 3732.7 7984 6633.1 11997 15804 5513.7 17457 6343 3924.6 16871 3844.2 8736.3 6421.8 11482 1 1 1 1 1 1 1 1 1 1 2845 896 2508 2649 3174 3174 1475;1476 LPSLGNKEPPGQEK 14 Phospho (STY) _LPS(ph)LGNKEPPGQEK_ LPS(1)LGNKEPPGQEK LPS(88.28)LGNKEPPGQEK 0 0 1 1 Q9UPY5 Q9UPY5 Q9UPY5 SLC7A11 Cystine/glutamate transporter MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.758361816406 3 525.258906 1572.75489 36494.4562456037 2.7563 0.0014478 436290 229.16 436290 229.16 754.755822779131 68.469 0.5465 68.469 68.185 68.732 0 48 18 3 0.961717608207585 0.00266936449672126 0.0441994718061023 0.0047885 1 16083 88.282 72.144 1 11949000 17840 7931.1 18515 8192.6 10164 18489 8841.1 13316 8422.5 9060.7 16884 7493.7 18500 8561.4 10788 18025 9051.6 13831 8328.2 8839.9 1 1 1 1 1 1 1 1 1 1 2846 2223 2509 2650 3175 3175 4028 LPSPEPSMSPK 11 Phospho (STY) _LPSPEPSMS(ph)PK_ LPSPEPS(0.048)MS(0.952)PK LPS(-43.66)PEPS(-13)MS(13)PK 0 0 1 0 O43303 O43303 O43303 CCP110 Centriolar coiled-coil protein of 110 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.448059082031 2 625.280347 1248.54614 31243.1533176176 2.1621 0.0013519 366500 229.17 366500 229.17 854.446796728844 68.024 0.41984 68.024 67.765 68.185 -1.4211E-14 17 13 2 0.644585421643376 0.000578039298201826 0.033486659302906 0.008125 1 15978 86.467 55.917 3 6125900 16115 9325.4 15748 8758 9010.3 15967 9027.6 13094 9225.5 15377 15247 8806.2 15796 9142.9 9542 15675 9193.9 13709 9094.4 14783 1 1 1 1 1 1 1 1 1 1 2847 104 2510 2651 3176 3176 173 LPSSPLGCR 9 Phospho (STY) _LPSS(ph)PLGCR_ LPS(0.009)S(0.991)PLGCR LPS(-20.61)S(20.61)PLGCR 0 0 1 0 Q8NCD3 Q8NCD3 Q8NCD3 HJURP Holliday junction recognition protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.323852539063 2 533.741192 1065.46783 38413.8876096165 1.9621 0.0010472 214680 114.58 214680 114.58 648.323034403887 60.219 0.95465 60.219 59.792 60.747 0 66 32 4 0.719573356241306 0.00215769037047123 0.0293617628796453 0.00018692 1 14103 128.87 101.65 2 30433000 21081 30723 22675 32870 25121 24227 23383 23556 33952 7385.3 19954 29035 22767 33479 25334 24675 24175 23877 33052 7499.3 1 1 1 1 1 1 1 1 1 1 2848 1495 2511 2652 3177 3177 2744 LPSSPVYEDAASFK 14 Phospho (STY) _LPSS(ph)PVYEDAASFK_ LPS(0.108)S(0.892)PVYEDAASFK LPS(-9.17)S(9.17)PVY(-117.2)EDAAS(-183.7)FK 0 0 1 0 Q14247 Q14247 Q14247 CTTN Src substrate cortactin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.68310546875 3 530.907762 1589.70146 37786.0767574157 1.5692 0.00083311 287760 152.78 287760 152.78 684.017405877772 86.772 0.75257 86.772 86.419 87.171 1.4211E-14 114 25 6 0.963810075741956 0.00463954760271015 0.13439319730403 6.7312E-16 1 20204 226.65 206.26 4 134420000 9753.2 27543 8634.2 26062 3437.6 7686.1 4289.5 13286 28239 7884.3 9224.8 26011 8696.5 26555 3830 8609.5 4981.3 13347 26848 7731.5 1 1 1 1 1 1 1 1 1 1 2849 1004 2512 2653 3178 3178 1704;1705 LPSTSDDCPAIGTPLR 16 Phospho (STY) _LPSTSDDCPAIGT(ph)PLR_ LPSTSDDCPAIGT(1)PLR LPS(-125.28)T(-105.24)S(-92.41)DDCPAIGT(92.41)PLR 0 0 1 0 Q15648 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1005.48919677734 2 890.402784 1778.79102 31145.3423504604 1.4481 0.0012894 128690 114.58 128690 114.58 1005.48675962958 70.781 0.43565 70.781 70.538 70.974 0 34 14 3 0.987155817917301 0.000841294936050373 0.0372217688076526 2.3189E-10 1 16598 186.94 158.66 4 14416000 6727.9 5802.1 6490.6 6452.2 5868.7 6936.2 5206.2 7307.5 6995.2 19824 6365.4 5484.7 6540.5 6593 5984.6 6972.9 5380.3 7912.9 6826.3 18836 1 1 1 1 1 1 1 1 1 1 2850 1084 2513 2654 3179 3179 4575 LPTAPFGCAPGTSFLQVTPPTSQNTTAR 28 Phospho (STY) _LPTAPFGCAPGTSFLQVT(ph)PPTSQNTTAR_ LPTAPFGCAPGTSFLQVT(0.964)PPT(0.03)S(0.006)QNTTAR LPT(-96.54)APFGCAPGT(-50.9)S(-51.49)FLQVT(15.12)PPT(-15.12)S(-21.87)QNT(-41.6)T(-40.47)AR 0 0 1 0 Q8ND82 Q8ND82 Q8ND82 ZNF280C Zinc finger protein 280C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1076.86840820313 3 999.810717 2996.41032 30692.2740043832 1.755 0.0017546 76402 76.387 76404 76.389 1076.86645091903 100.09 0.22302 100.09 99.947 100.17 0 19 7 4 0.814806495606207 0.0046699202446003 0.127734046790257 3.5528E-07 1 23342 138.84 125.59 8 43865000 5547.4 6106.9 6288.6 6697.2 5227.3 7811.3 6321.1 9753.1 7718.9 67989 5252 5772.3 6278.7 6858.3 5384.2 7932.3 6420.1 11756 7557 64245 1 1 1 1 1 1 1 1 1 1 2851 1504 2514 2655 3180 3180 4686 LPTTDGAHPQPISPIPGGVSSSGLSR 26 Phospho (STY) _LPTTDGAHPQPIS(ph)PIPGGVSSSGLSR_ LPTTDGAHPQPIS(0.999)PIPGGVSSSGLSR LPT(-55.22)T(-55.22)DGAHPQPIS(33.33)PIPGGVS(-34.03)S(-34.03)S(-33.33)GLS(-38.51)R 0 0 1 0 Q96AP7 Q96AP7 Q96AP7 ESAM Endothelial cell-selective adhesion molecule MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 946.489013671875 3 870.097075 2607.2694 32770.3455245267 1.6557 0.0014406 87795 76.39 87797 76.392 946.822296573543 72.27 0.34919 72.27 72.076 72.425 0 26 11 3 0.616841097768724 0.000502026720060246 0.00452770093966991 0.0079218 1 16980 81.077 65.949 7 8951100 5441.1 4332.2 5163.1 4669.2 7997.3 4575.9 13446 9354.2 4495.8 30985 5147.6 4094.4 5259.9 4772.1 8016.9 4709 13180 10131 4815.6 29393 1 1 1 1 1 1 1 1 1 1 2852 1648 2515 2656 3181 3181 3042 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 Oxidation (M) _LQAALDDEEAGGRPAM(ox)EPGNGSLDLGGDSAGR_ LQAALDDEEAGGRPAM(1)EPGNGSLDLGGDSAGR LQAALDDEEAGGRPAM(260.68)EPGNGSLDLGGDSAGR 0 1 0 1 Q00839 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1124.87255859375 3 1048.14958 3141.4269 30155.4743908293 0.55011 0.0005766 72879 76.388 72880 76.389 1124.87224095484 69.811 0.37861 69.811 69.638 70.017 0 51 12 5 0.959820793608358 0.00325663921970971 0.0320233955831062 1.9406E-25 1 16377 260.68 243.04 1 23135000 6195.5 5108.6 5918.1 4699 4335 6160.3 3653.6 4967.6 5057.2 10030 5861.5 4823.6 5954.5 4873.2 4484.4 6113.5 3790.2 5331.3 4930.4 9559.7 1 1 1 1 1 1 1 1 1 1 2853 829 2516 2657 3182 3182 112 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 Unmodified _LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR_ 0 0 0 1 Q00839 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1119.87622070313 3 1042.81794 3125.43198 29650.9452648252 0.69318 0.00072286 73252 76.388 73252 76.389 1119.54090634072 75.623 0.54623 75.623 75.314 75.86 0 75 18 6 0.965128676616025 0.0113777217745514 0.469251280420763 1.1935E-11 1 17738 187.77 168.75 1 51549000 14470 10183 14462 10957 10189 17086 8975.9 12382 11725 24287 13692 9623.5 14508 11301 10577 16839 9270.2 13334 11453 23156 1 1 1 1 1 1 1 1 1 1 2854 829 2516 2658 3183 3183 LQAKESPQR 9 Phospho (STY) _LQAKES(ph)PQR_ LQAKES(1)PQR LQAKES(77.89)PQR 0 0 1 1 Q15061 Q15061 Q15061 WDR43 WD repeat-containing protein 43 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 532.296203613281 3 379.520172 1135.53869 42758.1795139792 0.47739 0.00018118 402550 152.78 402550 152.78 532.295397075973 37.29 1.0253 37.29 36.955 37.98 0 130 38 4 0.957427955353181 0.00827503442287002 0.202164859453867 0.0073132 1 8376 77.894 59.799 1 523950000 24257 24901 25533 25687 18438 22661 19275 21659 24464 2529.6 22958 23527 25552 26278 19146 22842 19722 21840 23919 2883.2 1 1 1 1 1 1 1 1 1 1 2855 1056 2517 2659 3184 3184 1823 LQAKESPQRK 10 Phospho (STY) _LQAKES(ph)PQRK_ LQAKES(1)PQRK LQAKES(67.23)PQRK 0 0 1 2 Q15061 Q15061 Q15061 WDR43 WD repeat-containing protein 43 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.382019042969 3 422.218493 1263.63365 39107.2978165138 2.6377 0.0011137 542760 229.16 542760 229.16 651.380949865216 38.132 0.49216 38.132 37.891 38.383 0 59 16 5 0.885438496911398 0.00466399000063416 0.0549782291440788 0.017145 1 8609 67.234 40.426 1 75657000 36859 30455 35567 30529 28389 33477 29167 29964 30264 6104.7 34874 28770 35802 31389 29245 33392 29682 30376 29815 6441.8 1 1 1 1 1 1 1 1 1 1 2856 1056 2518 2660 3185 3185 1823 LQDISELLATGAGLSESEAEPDGDHNITELPQAVAGR 37 Phospho (STY) _LQDISELLATGAGLS(ph)ESEAEPDGDHNITELPQAVAGR_ LQDISELLATGAGLS(0.978)ES(0.022)EAEPDGDHNITELPQAVAGR LQDIS(-134.14)ELLAT(-71.98)GAGLS(16.43)ES(-16.43)EAEPDGDHNIT(-88.69)ELPQAVAGR 0 0 1 0 Q9NQ55 Q9NQ55 Q9NQ55 PPAN Suppressor of SWI4 1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1029.50366210938 4 971.711289 3882.81605 31175.0326365737 1.4867 0.0014447 58958 57.29 58960 57.292 1029.50306674451 100.6 0.44826 100.6 100.42 100.87 0 33 15 5 0.856113782274609 0.00188335602229279 0.0303210528054604 1.0884E-18 2 23566 237.2 222.12 5 215270000 6981.4 7020.7 7921.7 7474.2 7318.9 7012 7472.8 9729.4 8243.5 117330 6609.7 6634.8 7915.5 7639.1 7465.8 7304.1 7620.4 13189 8101.2 110700 2 2 2 2 2 2 2 2 2 2 2857 2001 2519 2661 3186;3187 3186 3632 LQEDPNYSPQR 11 Phospho (STY) _LQEDPNYS(ph)PQR_ LQEDPNYS(1)PQR LQEDPNY(-121.51)S(121.51)PQR 0 0 1 0 P46379 P46379 P46379 BAG6 Large proline-rich protein BAG6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.38720703125 2 713.803563 1425.59257 33864.1391405265 2.1014 0.0015 160520 114.58 160520 114.58 828.38431464535 45.783 0.43654 45.783 45.614 46.05 -7.1054E-15 35 14 3 0.984783945624702 0.000721564479863881 0.015836711862274 6.2711E-10 1 10572 177.41 149.24 2 16117000 22049 31105 20791 29114 66649 22148 65759 45369 33740 43716 20859 29372 21568 29903 64885 22884 66103 45926 34649 42213 1 1 1 1 1 1 1 1 1 1 2858 609 2520 2662 3188 3188 1007 LQEDPNYSPQRFPNAQR 17 Phospho (STY) _LQEDPNYS(ph)PQRFPNAQR_ LQEDPNYS(1)PQRFPNAQR LQEDPNY(-123.6)S(123.6)PQRFPNAQR 0 0 1 1 P46379 P46379 P46379 BAG6 Large proline-rich protein BAG6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.714782714844 3 713.99177 2138.95348 33704.3560813542 1.2875 0.00091928 106990 76.388 106990 76.389 790.714216191576 55.556 0.61079 55.556 55.251 55.861 0 86 20 5 0.990907714442485 0.00583895453581455 0.0914425300065064 2.391E-16 1 12946 240.46 199.67 2 53906000 21611 30011 23164 31682 20544 25865 20728 26754 36551 9596.9 20456 28360 23203 32335 21020 26215 21524 27091 35394 9655.8 1 1 1 1 1 1 1 1 1 1 2859 609 2521 2663 3189 3189 1007 LQEKEDLQELNDR 13 Unmodified _LQEKEDLQELNDR_ 0 0 0 1 P02545 P02545 P02545 LMNA Prelamin-A/C;Lamin-A/C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.716796875 3 543.940803 1628.80058 37753.8103568016 1.9137 0.0010409 280870 152.77 280870 152.78 696.715271636286 60.326 0.72334 60.326 59.822 60.546 0 77 24 4 0.854795969553845 0.00375577565607886 0.027260124749996 1.0014E-06 1 14129 153.23 125.37 1 29612000 17339 45212 19383 39280 16718 19323 16764 27586 43471 8200.8 16415 42676 19368 40373 17148 20378 17794 27598 41760 8360.5 1 1 1 1 1 1 1 1 1 1 2860 285 2522 2664 3190 3190 LQLGTPPPLLAAR 13 Phospho (STY) _LQLGT(ph)PPPLLAAR_ LQLGT(1)PPPLLAAR LQLGT(119.63)PPPLLAAR 0 0 1 0 Q9P2N5 Q9P2N5 Q9P2N5 RBM27 RNA-binding protein 27 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.477722167969 2 713.894527 1425.7745 35436.6759281902 2.0354 0.001453 160500 114.58 160500 114.58 828.476014227464 96.47 0.8975 96.47 95.939 96.837 1.4211E-14 81 30 4 0.972897993858712 0.00101999259385769 0.026412323119302 0.00018257 1 22392 119.63 96.752 1 7352500 4834.8 7444.9 4059.7 7698.2 4820.8 4316.7 4851.8 6719.6 8201.3 19403 4572 7034.3 4141.8 7834.4 4850.9 4544.5 5028.9 7231.8 7950.2 18426 1 1 1 1 1 1 1 1 1 1 2861 2112 2523 2665 3191 3191 4797 LQLVQSLSRDMTR 13 Oxidation (M),Phospho (STY) _LQLVQS(ph)LSRDM(ox)TR_ LQLVQSLSRDM(1)TR LQLVQS(0.333)LS(0.333)RDMT(0.333)R LQLVQSLSRDM(51.01)TR LQLVQS(0)LS(0)RDMT(0)R 0 1 1 1 REV__Q8TDH9 REV__Q8TDH9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.995300292969 3 548.270928 1641.79096 39918.1506259105 1.2327 0.00067588 139330 76.389 139330 76.39 624.660371270089 64.673 0.75465 64.673 64.328 65.082 0 84 25 5 0.99599938931218 0.00602695155998777 0.077743580032398 0.056604 1 15167 51.013 38.246 3 63328000 9985 7402.3 10970 9892.8 9443.1 10333 9828.1 9575.7 8921.7 3830.4 9452 7006.9 10972 10013 9677.7 10335 9960.8 9749.9 8841.5 3828.4 1 1 1 1 1 1 1 1 1 1 + 2862 2341 2524 2666 3192 3192 4298;4299 LQPERGSPK 9 Phospho (STY) _LQPERGS(ph)PK_ LQPERGS(1)PK LQPERGS(93.77)PK 0 0 1 1 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 517.28857421875 3 364.513018 1090.51722 42811.1676953455 1.3358 0.00048693 419120 152.78 419120 152.78 517.288670737198 38.023 1.1864 38.023 37.658 38.844 0 161 40 6 0.991570067642323 0.0310473786353859 0.444861189094181 0.0026396 2 8578 93.766 58.878 1 655310000 159280 190770 174090 193240 159010 152990 177730 167410 190190 20481 150780 180230 174300 197610 162530 155370 180360 167980 187130 23160 2 2 2 2 2 2 2 2 2 2 2863 2180 2525 2667 3193;3194 3194 3934 LQPSSSPENSLDPFPPR 17 Phospho (STY) _LQPSSS(ph)PENSLDPFPPR_ LQPS(0.012)S(0.102)S(0.886)PENSLDPFPPR LQPS(-18.59)S(-9.39)S(9.39)PENS(-81.83)LDPFPPR 0 0 1 0 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.689331054688 3 649.96645 1946.87752 36200.5555514872 1.6003 0.0010401 117530 76.388 117530 76.389 726.688263347333 84.471 2.2994 84.471 83.262 85.562 0 233 79 4 0.880367384975342 0.00592301788909194 0.0389148216539162 1.0136E-10 2 19710 182.22 163.99 4 32809000 9868 12004 11224 11234 13812 10609 11293 11574 12405 16838 9342.7 11335 11250 11571 13829 10705 11647 12079 12193 16123 2 2 2 2 2 2 2 2 2 2 2864 1576 2526 2668 3195;3196 3195 2894 LQQGAGLESPQGQPEPGAASPQR 23 Phospho (STY) _LQQGAGLESPQGQPEPGAAS(ph)PQR_ LQQGAGLESPQGQPEPGAAS(1)PQR LQQGAGLES(-147.85)PQGQPEPGAAS(147.85)PQR 0 0 1 0 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.762268066406 3 795.039449 2382.09652 33406.2236862377 1.9279 0.0015328 96080 76.387 96082 76.389 871.761361475255 53.826 0.79099 53.826 53.447 54.238 7.1054E-15 158 26 7 0.950084044768908 0.00567412674441499 0.0414224763600088 5.8007E-13 1 12494 207.22 193.24 2 565330000 16210 18848 17227 19863 13762 13851 14303 18151 19579 19827 15343 17810 17247 20236 14183 14244 14678 18637 19095 19089 1 1 1 1 1 1 1 1 1 1 2865 1944 2527 2669 3197 3197 3530;3531 LQQGAGLESPQGQPEPGAASPQR 23 2 Phospho (STY) _LQQGAGLES(ph)PQGQPEPGAAS(ph)PQR_ LQQGAGLES(1)PQGQPEPGAAS(1)PQR LQQGAGLES(196.72)PQGQPEPGAAS(196.72)PQR 0 0 2 0 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 898.416076660156 3 821.694892 2462.06285 33593.648597107 1.2241 0.0010058 92963 76.387 92964 76.388 898.415785802473 54.983 0.83975 54.983 54.609 55.449 7.1054E-15 87 28 4 0.972180018199589 0.00178101669055857 0.00629780249415601 2.2088E-12 1 12806 196.72 176.28 1 27050000 5281 4694.3 5115.4 5391.1 4732.2 6183.5 4303.5 5171.7 5178.7 7403.3 4996.6 4438.5 5155 5505.6 4819.6 6164 4425.1 5449.9 5072.7 7090.8 1 1 1 1 1 1 1 1 1 1 2866 1944 2527 2670 3198 3198 3530;3531 LQQGAGLESPQGQPEPGAASPQRQQDLHLESPQR 34 Phospho (STY) _LQQGAGLESPQGQPEPGAAS(ph)PQRQQDLHLESPQR_ LQQGAGLESPQGQPEPGAAS(1)PQRQQDLHLESPQR LQQGAGLES(-122)PQGQPEPGAAS(53.56)PQRQQDLHLES(-53.56)PQR 0 0 1 1 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 986.984375 4 929.445958 3713.75473 31780.0641264861 1.6117 0.001498 61639 57.29 61641 57.292 987.238244721174 57.332 0.46127 57.332 57.101 57.562 0 46 15 6 0.687748386919304 0.00111908639641329 0.0410528033030685 2.1173E-13 1 13435 211.79 193.65 3 17628000 3684.3 5003.9 4453.6 4846.8 3542.1 0 0 5138.2 5651.1 4450.1 3489.2 4726.1 4422.5 4908.2 3603.7 0 0 5089 5336.3 4309.2 1 1 1 1 1 0 0 1 1 1 2867 1944 2528 2671 3199 3199 3530;3531;3532 LQQQAALSPTTAPAVSSVSK 20 Phospho (STY) _LQQQAALSPT(ph)TAPAVSSVSK_ LQQQAALS(0.227)PT(0.763)T(0.01)APAVSSVSK LQQQAALS(-5.28)PT(5.28)T(-18.85)APAVS(-73.53)S(-79.62)VS(-91.02)K 0 0 1 0 Q8WXI9 Q8WXI9 Q8WXI9 GATAD2B Transcriptional repressor p66-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 841.794982910156 3 688.683943 2063.03 33453.8140339646 2.1943 0.0015112 221840 152.78 221840 152.78 841.794145596869 69.37 0.45865 69.37 69.179 69.638 0 70 15 6 0.847472238542256 0.00891330246258849 0.090376109914753 6.1818E-05 1 16303 117.61 100.54 6 74703000 15820 13782 17043 15159 15279 18477 13794 15033 19674 17816 14974 13028 17066 15534 15594 18363 14273 15750 19163 17124 1 1 1 1 1 1 1 1 1 1 2868 1582 2529 2672 3200 3200 4706 LQSFDSPER 9 Phospho (STY) _LQSFDS(ph)PER_ LQSFDS(1)PER LQS(-44.67)FDS(44.67)PER 0 0 1 0 P78332 P78332 P78332 RBM6 RNA-binding protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.326904296875 2 579.744986 1157.47542 37868.9590214711 1.6459 0.00095418 197640 114.58 197640 114.58 694.327393055214 59.17 1.5268 59.17 58.581 60.107 0 105 52 4 0.928555016923166 0.00273872364575224 0.117479821480518 9.0138E-05 1 13849 134.21 104.67 2 33831000 27992 30023 25074 28509 18919 24836 18857 23920 28497 8345 26477 28353 25340 29305 19571 25063 19461 24280 27710 8411.5 1 1 1 1 1 1 1 1 1 1 2869 795 2530 2673 3201 3201 1270 LQTPNTFPK 9 Phospho (STY) _LQT(ph)PNTFPK_ LQT(0.995)PNT(0.005)FPK LQT(23.22)PNT(-23.22)FPK 0 0 1 0 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.437805175781 2 563.270639 1124.52673 35823.5026041205 2.6483 0.0014917 406840 229.16 406850 229.17 792.435362718615 68.044 0.7135 68.044 67.675 68.388 0 63 23 4 0.979740723229849 0.00215365648360768 0.13310560045124 0.0005445 1 15993 115.15 55.726 2 20200000 19562 34041 20670 32739 24505 22304 25927 25513 35436 26205 18515 32150 20800 33527 24670 22912 26583 26257 34561 25266 1 1 1 1 1 1 1 1 1 1 2870 1035 2531 2674 3202 3202 4564 LRARPSLTVTPR 12 2 Phospho (STY) _LRARPS(ph)LT(ph)VTPR_ LRARPS(0.87)LT(0.629)VT(0.501)PR LRARPS(5.85)LT(1.28)VT(-1.28)PR 0 0 2 2 Q8TF76 Q8TF76 Q8TF76 GSG2 Serine/threonine-protein kinase haspin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 439.735626220703 4 382.445558 1525.75313 46436.3025146197 0.93822 0.00035882 149800 57.29 149800 57.29 439.735047776299 22.63 2.8391 22.63 22.313 25.152 3.5527E-15 279 97 4 0.956719614102245 0.0114113901145161 0.11894833269506 0.043712 1 5213 40.278 21.445 3 32138000 8306.4 8617 8082.7 7504 6477.6 8346.6 6526.7 7576.2 8734.1 3987.6 7859.2 8133.9 8132.1 7786.4 6671 8326.5 6701.7 7749.5 8524.3 3930.1 1 1 1 1 1 1 1 1 1 1 2871 1559 2532 2675 3203 3203 2868;4703 LRDPSPK 7 Phospho (STY) _LRDPS(ph)PK_ LRDPS(1)PK LRDPS(44.31)PK 0 0 1 1 REV__Q9ULL8 REV__Q9ULL8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 450.923400878906 3 298.147787 891.421532 47051.3041300094 1.2946 0.00038599 512410 152.78 512420 152.78 450.922934479565 30.003 0.50482 30.003 29.778 30.283 -3.5527E-15 46 16 4 0.960451244830031 0.00629639575798379 0.174071337451154 0.037864 1 6688 44.309 16.567 1 35547000 31355 26027 34827 20202 47693 27546 38508 28824 22386 2626.5 29683 24553 35010 21216 47494 27304 39197 28942 22772 3140.2 1 1 1 1 1 1 1 1 1 1 + 2872 2353 2533 2676 3204 3204 4310 LRDSITR 7 Phospho (STY) _LRDS(ph)ITR_ LRDS(0.963)IT(0.037)R LRDS(14.13)IT(-14.13)R 0 0 1 1 Q6ZUJ8 Q6ZUJ8 Q6ZUJ8 PIK3AP1 Phosphoinositide 3-kinase adapter protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.316955566406 2 470.734224 939.453895 40046.1518232223 1.9716 0.0009281 243410 114.58 243410 114.58 585.315807327623 38.431 0.51399 38.431 38.183 38.697 0 39 17 3 0.676999429916364 0.00180595735958168 0.0410279707279548 0.050919 1 8696 48.091 11.71 2 23091000 53303 27224 55581 29052 22757 54228 20522 27160 16346 4751 50447 25728 55430 30122 24996 52901 20882 28436 16306 5102.2 1 1 1 1 1 1 1 1 1 1 2873 1303 2534 2677 3205 3205 2324 LREQGTESR 9 Phospho (STY) _LREQGTES(ph)R_ LREQGT(0.001)ES(0.999)R LREQGT(-31.37)ES(31.37)R 0 0 1 1 P42166;P42167 P42166;P42167 P42167 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.844177246094 2 578.261334 1154.50812 37432.3973880905 1.2721 0.00073562 198150 114.58 198150 114.58 692.842777631078 26.856 0.32343 26.856 26.679 27.002 0 21 10 3 0.982055455653406 0.00122191270936624 0.0239416717112553 0.0097721 1 5978 81.002 33.025 2 12098000 10184 5689.1 10504 5667.3 6029.9 9566.8 6283.5 6819.2 6670.1 3824.7 9637.5 5374.2 10505 5883 6387.3 9388 6394.4 7061.9 6565 3759.2 1 1 1 1 1 1 1 1 1 1 2874 582;581 2535 2678 3206 3206 936 LRLPQIGSK 9 Phospho (STY) _LRLPQIGS(ph)K_ LRLPQIGS(1)K LRLPQIGS(60.36)K 0 0 1 1 P35125;Q8NFA0 P35125 P35125 USP6;USP32 Ubiquitin carboxyl-terminal hydrolase 6;Ubiquitin carboxyl-terminal hydrolase 32 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 517.312927246094 3 364.537275 1090.58999 44076.1214150385 1.3278 0.00048404 419090 152.78 419100 152.78 517.312563293597 77.311 0.92454 77.311 76.766 77.69 0 99 31 4 0.947818240706387 0.00182661037561211 0.0113580253593571 0.015988 1 18052 60.364 41.266 1 21765000 5606.9 6705.1 5380.2 6395.3 4361.2 5175.9 5314.8 5895.8 7873.7 1389.8 5304.7 6332.3 5419.9 6565.8 4501.8 5254.1 5434.3 5927.9 7660.5 1445.1 1 1 1 1 1 1 1 1 1 1 2875 540 2536 2679 3207 3207 874 LRLSPSPTSQR 11 Phospho (STY) _LRLS(ph)PSPTSQR_ LRLS(0.995)PS(0.005)PTSQR LRLS(22.92)PS(-22.92)PT(-56.14)S(-67.97)QR 0 0 1 1 P02545 P02545 P02545 LMNA Prelamin-A/C;Lamin-A/C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 517.613525390625 3 441.225648 1320.65511 43649.4248780731 0.4504 0.00019873 173130 76.388 173130 76.388 517.613413092359 50.254 1.2455 50.254 49.775 51.021 0 147 42 5 0.949984077849523 0.00512205052301639 0.0481693773383325 7.4777E-07 1 11624 142.55 121.61 4 280370000 8155.1 18004 8078.6 18495 5289.7 8371.1 6659.9 10025 19102 1406.5 7716.5 17010 8107.5 18797 5563.8 8866 7054.1 10034 18321 1556.4 1 1 1 1 1 1 1 1 1 1 2876 285 2537 2680 3208 3208 473;474 LRLSPSPTSQR 11 2 Phospho (STY) _LRLS(ph)PS(ph)PTSQR_ LRLS(0.984)PS(0.596)PT(0.233)S(0.187)QR LRLS(18.79)PS(4.15)PT(-4.15)S(-5.12)QR 0 0 2 1 P02545 P02545 P02545 LMNA Prelamin-A/C;Lamin-A/C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 544.268981933594 3 467.881091 1400.62144 42319.6061992204 1.1005 0.00051489 163260 76.388 163260 76.388 544.268713210353 54.048 2.1572 54.048 53.177 55.335 0 212 73 4 0.632723531557771 0.00409834683224353 0.0494864895633075 0.043922 1 12569 44.245 22.994 6 34034000 12435 19106 13446 18672 16171 14220 15314 15852 20360 6125.6 11770 18047 13513 19127 16242 14484 15768 16022 19875 6134.8 1 1 1 1 1 1 1 1 1 1 2877 285 2537 2681 3209 3209 473;474 LRLSPSPTSQR 11 2 Phospho (STY) _LRLS(ph)PS(ph)PTSQR_ LRLS(0.76)PS(0.76)PT(0.467)S(0.013)QR LRLS(3.48)PS(3.48)PT(-3.48)S(-19.01)QR 0 0 2 1 P02545 P02545 P02545 LMNA Prelamin-A/C;Lamin-A/C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.899230957031 2 701.317999 1400.62144 34637.7159237842 1.7937 0.001258 163380 114.58 163380 114.58 815.899453352304 54.023 2.417 54.023 53.177 55.594 7.1054E-15 221 82 4 0.651420949382364 0.000854437635195425 0.00439016100207183 0.0092966 1 12727 81.377 70.472 6 49389000 28397 64138 29799 66774 27678 29391 27444 38834 70305 21427 26876 60604 29899 67800 28250 31288 29121 39233 67552 21075 1 1 1 1 1 1 1 1 1 1 2878 285 2537 2681 3210 3210 473;474 LRQSFRR 7 Phospho (STY) _LRQS(ph)FRR_ LRQS(1)FRR LRQS(60.72)FRR 0 0 1 2 P49757 P49757 P49757 NUMB Protein numb homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 424.569213867188 3 348.181714 1041.52331 47737.6114781109 0.014318 4.9852E-06 219390 76.388 219390 76.388 424.569149212901 32.344 0.61669 32.344 31.94 32.557 0 45 17 4 0.98437061067423 0.00246627429229552 0.0262768172124197 0.029625 1 7240 60.717 44.71 1 15006000 18747 15872 17628 16741 15924 19829 14473 18459 18834 2251.5 17736 14999 17791 17186 16244 19725 14921 18636 18399 2547.3 1 1 1 1 1 1 1 1 1 1 2879 651 2538 2682 3211 3211 1079 LRSAGAAQK 9 Phospho (STY) _LRS(ph)AGAAQK_ LRS(1)AGAAQK LRS(147.42)AGAAQK 0 0 1 1 Q6PL18 Q6PL18 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.609710693359 3 327.834091 980.480444 45473.8953479802 -0.030743 -1.0079E-05 466010 152.78 466010 152.78 480.609677451841 35.807 0.37498 35.807 35.651 36.026 0 30 12 3 0.960279154103413 0.00278822212242932 0.0259026230453251 4.0434E-06 1 8061 147.42 98.674 1 31767000 35493 8543.4 39521 7283.6 7617.7 38503 8443.9 18773 8175 1749.6 33600 8063.5 39174 8057.1 9625.6 36956 8548.2 19648 8077.7 2082 1 1 1 1 1 1 1 1 1 1 2880 1274 2539 2683 3212 3212 2267 LRSPFLQK 8 Phospho (STY) _LRS(ph)PFLQK_ LRS(1)PFLQK LRS(100.93)PFLQK 0 0 1 1 Q9UJU6 Q9UJU6 Q9UJU6 DBNL Drebrin-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 509.633697509766 3 356.858237 1067.55288 43533.7391688607 1.3066 0.00046627 428110 152.78 428110 152.78 509.633331171917 67.312 0.75463 67.312 66.95 67.705 0 77 25 4 0.992078668286387 0.00822273568028763 0.268517276877838 0.0010702 1 15814 100.93 32.38 1 32156000 23355 15181 23131 14183 7876.6 24708 8093.2 15072 16952 1230.7 22099 14335 23119 14793 8905.3 24178 8470.3 15528 16351 1507.6 1 1 1 1 1 1 1 1 1 1 2881 2161 2540 2684 3213 3213 3893 LRSPPEALVQGR 12 Phospho (STY) _LRS(ph)PPEALVQGR_ LRS(1)PPEALVQGR LRS(41.87)PPEALVQGR 0 0 1 1 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 544.634033203125 3 468.244931 1401.71296 42284.857071506 1.2592 0.00058961 163140 76.388 163140 76.389 544.634585447685 58.327 0.73322 58.327 58.023 58.756 0 45 24 3 0.62861284790171 0.00137736166766702 0.02916418120877 0.043115 1 13667 41.87 9.8072 1 11585000 19142 20889 18548 20943 21110 18313 21559 21303 23686 8838.7 18111 19734 18743 21458 21280 18527 21982 21519 23280 8815.7 1 1 1 1 1 1 1 1 1 1 2882 2144 2541 2685 3214 3214 3860 LRSSVPGVR 9 Phospho (STY) _LRSS(ph)VPGVR_ LRS(0.006)S(0.994)VPGVR LRS(-22.25)S(22.25)VPGVR 0 0 1 1 P08670 P08670 P08670 VIM Vimentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 427.240692138672 3 350.853374 1049.53829 49036.8907501622 -0.62512 -0.00021932 217720 76.388 217720 76.387 427.240992832674 45.44 0.40527 45.44 45.18 45.585 0 24 13 2 0.970298675836353 0.000855884140781632 0.00397197981915231 0.0050979 1 10429 85.417 68.206 2 43827000 27626 20947 25078 19537 30549 23288 32924 22685 19503 1150.8 26131 19780 25470 20206 30700 23170 33032 22813 19813 1608.6 1 1 1 1 1 1 1 1 1 1 2883 336 2542 2686 3215 3215 551 LRSWEQEEEEEEVR 14 Phospho (STY) _LRS(ph)WEQEEEEEEVR_ LRS(1)WEQEEEEEEVR LRS(202.34)WEQEEEEEEVR 0 0 1 1 Q0VD83 Q0VD83 Q0VD83 APOBR Apolipoprotein B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1078.98669433594 2 964.407109 1926.79967 30010.9093152755 1.1056 0.0010662 118810 114.58 118810 114.58 1078.98647542105 65.942 0.48272 65.942 65.717 66.2 0 36 15 3 0.96228774193026 0.00050793769532492 0.0113223401367545 9.1201E-11 1 15495 202.34 164.7 1 10952000 9457.1 2582.9 8794 2429.4 4229 9843.8 4271 6243.3 3218.1 12642 8946.4 2439.1 8837.4 2622.9 4560.7 9514.7 4316.7 6782.9 3219.9 12048 1 1 1 1 1 1 1 1 1 1 2884 898 2543 2687 3216 3216 1482 LRVQSPEPPAPER 13 Phospho (STY) _LRVQS(ph)PEPPAPER_ LRVQS(1)PEPPAPER LRVQS(72.45)PEPPAPER 0 0 1 1 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.981140136719 3 519.259129 1554.75556 39637.1866597926 1.5131 0.0007857 147110 76.387 147110 76.388 595.98041312764 46.781 0.54693 46.781 46.519 47.066 0 44 18 4 0.899441260069761 0.0016202866442391 0.00822181630750124 0.0099609 1 10836 72.446 41.218 1 21295000 18378 11036 15736 11462 10907 15816 11084 13572 10929 5979.7 17381 10428 15939 11812 11356 15642 11270 13881 10790 5944.7 1 1 1 1 1 1 1 1 1 1 2885 994 2544 2688 3217 3217 1690 LRVSLGTR 8 Phospho (STY) _LRVS(ph)LGTR_ LRVS(0.999)LGT(0.001)R LRVS(28.4)LGT(-28.4)R 0 0 1 1 Q96CW5 Q96CW5 Q96CW5 TUBGCP3 Gamma-tubulin complex component 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 404.567932128906 3 327.84622 980.51683 50201.0588663243 -0.4381 -0.00014363 233000 76.388 233000 76.387 404.233775492351 58.022 0.46813 58.022 57.732 58.201 -7.1054E-15 25 15 2 0.706045404332295 0.000298830281561674 0.00539040588783454 0.012824 1 13599 64.82 39.965 2 8049000 5869.2 5643.5 5315.7 5542 6316.6 5624.2 5692.3 5215.7 5471.1 1721.1 5551.7 5330.6 5395.5 5697.8 6342 5631.9 5818.2 5299.4 5407.7 1741.4 1 1 1 1 1 1 1 1 1 1 2886 1665 2545 2689 3218 3218 3063 LSAKPPAK 8 Phospho (STY) _LS(ph)AKPPAK_ LS(1)AKPPAK LS(48.44)AKPPAK 0 0 1 1 P05114 P05114 P05114 HMGN1 Non-histone chromosomal protein HMG-14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 526.991394042969 3 297.828166 890.462669 43243.6447050609 1.0658 0.00031741 769450 229.16 769450 229.16 526.991123200948 50.927 0.46234 50.927 50.732 51.195 0 32 15 3 0.975336158589807 0.0010371063522332 0.0124901934976135 0.032257 1 11833 48.442 28.608 1 12670000 16506 13024 15000 11815 14627 15919 12381 13924 13824 2279.2 15614 12296 15182 12271 14835 15752 12750 14112 13579 2468.4 1 1 1 1 1 1 1 1 1 1 2887 299 2546 2690 3219 3219 493 LSAQGQAISVVGSLSSMSPLEEEAPQAK 28 Oxidation (M),Phospho (STY) _LSAQGQAISVVGSLSS(ph)M(ox)SPLEEEAPQAK_ LSAQGQAISVVGSLSSM(1)SPLEEEAPQAK LSAQGQAISVVGSLS(0.086)S(0.457)MS(0.457)PLEEEAPQAK LSAQGQAISVVGSLSSM(158.97)SPLEEEAPQAK LS(-110.14)AQGQAIS(-75.41)VVGS(-31.3)LS(-7.24)S(0)MS(0)PLEEEAPQAK 0 1 1 0 Q92797 Q92797 Q92797 SYMPK Symplekin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.435363769531 4 728.35051 2909.37293 34005.5498584358 2.1267 0.0015489 157320 114.58 157320 114.58 843.184179303391 89.919 0.5298 89.919 89.662 90.192 0 62 17 5 0.791468119939804 0.0047237536723129 0.0881086086029894 1.1304E-07 1 20961 158.97 133.56 6 18791000 2627.8 4190.9 3621.7 4020.5 2401.8 4127.9 3216.7 3601.8 3418.4 51950 2490.3 3958 3576.3 4140.3 2521.1 4224.1 3240.7 5198.6 3364.4 49000 1 1 1 1 1 1 1 1 1 1 2888 1622 2547 2691 3220 3220 189 2999;3000;3001 LSASSEDISER 11 Phospho (STY) _LSAS(ph)SEDISER_ LSAS(0.5)S(0.5)EDISER LS(-34.16)AS(0)S(0)EDIS(-66.49)ER 0 0 1 0 Q13233 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 751.851318359375 2 637.269022 1272.52349 35798.9005619694 2.1606 0.0013769 179800 114.58 179800 114.58 751.849537948961 49.562 0.61541 49.562 49.31 49.925 0 44 20 3 0.996573147139065 0.00139083225383336 0.011125018773083 1.0029E-14 2 11492 219.74 174.92 4 29007000 67957 55725 70734 53658 46519 67693 50304 56660 56081 26772 64315 52630 70776 55446 48696 67138 51182 58069 55090 26521 2 2 2 2 2 2 2 2 2 2 2889 937 2548 2692 3221;3222 3222 1543;1544 LSASTASELSPK 12 Phospho (STY) _LSASTASELS(ph)PK_ LSASTASELS(1)PK LS(-125.01)AS(-112.97)T(-101.37)AS(-69.66)ELS(69.66)PK 0 0 1 0 Q3KQU3 Q3KQU3 Q3KQU3 MAP7D1 MAP7 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 576.978454589844 3 424.202397 1269.58536 41330.6463731933 1.8341 0.00077804 360150 152.78 360150 152.78 576.977380120542 61.845 0.58608 61.845 61.65 62.237 0 56 19 4 0.935729320262702 0.00355729433967167 0.0433837493624805 4.0208E-09 1 14504 175.66 154.1 5 35378000 10667 15588 9807.9 15886 13400 11620 13996 15647 19027 3672.6 10091 14727 9970.5 16225 13399 11895 14356 15649 18560 3820.3 1 1 1 1 1 1 1 1 1 1 2890 1127 2549 2693 3223 3223 1966 LSDSMMSALDLSGNADDGVGD 21 Unmodified _LSDSMMSALDLSGNADDGVGD_ 0 0 0 0 Q9NVN8 Q9NVN8 Q9NVN8 GNL3L Guanine nucleotide-binding protein-like 3-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1150.51416015625 2 1035.43553 2068.85651 28880.7170936357 1.4026 0.0014523 110660 114.58 110660 114.58 1150.51515215653 100.5 0.11318 100.5 100.45 100.56 0 5 3 2 0.921964128627955 0.000368451700897128 0.0163456506444445 3.7787E-07 1 23517 154.07 129.21 1 19077000 5751.5 4971.8 4980.8 6356.1 5658.4 6472.6 3676.9 8949.5 5319 78115 5439.5 4704.6 5064.2 6443.6 5675.7 6660.8 3882.9 11235 5178.6 73762 1 1 1 1 1 1 1 1 1 1 2891 2046 2550 2694 3224 3224 LSDSMMSALDLSGNADDGVGD 21 Unmodified _LSDSMMSALDLSGNADDGVGD_ 0 0 0 0 Q9NVN8 Q9NVN8 Q9NVN8 GNL3L Guanine nucleotide-binding protein-like 3-like protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1150.01721191406 2 1035.43553 2068.85651 NaN NaN NaN NaN NaN NaN NaN NaN 100.57 1 100.57 100.07 101.07 0 NaN NaN NaN 0.049068 1 23527 51.875 35.651 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2892 2046 2550 2694 3225 3225 LSEEAECPNPSTPSK 15 Phospho (STY) _LSEEAECPNPST(ph)PSK_ LSEEAECPNPS(0.179)T(0.821)PSK LS(-132.76)EEAECPNPS(-6.61)T(6.61)PS(-33.69)K 0 0 1 0 O94804 O94804 O94804 STK10 Serine/threonine-protein kinase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.016723632813 3 575.906092 1724.69645 36324.4957196929 2.2191 0.001278 265280 152.77 265280 152.78 728.680799205444 51.389 0.49707 51.389 51.136 51.633 -7.1054E-15 61 16 5 0.860442706136699 0.00432956444589598 0.0185858915555092 6.7644E-07 1 11940 156.13 136.74 4 34519000 23646 8923.3 28760 9653.4 20460 26995 19702 20189 10315 6859.2 22395 8433.7 28563 10146 21234 26212 19834 20721 10576 6926 1 1 1 1 1 1 1 1 1 1 2893 218 2551 2695 3226 3226 4349 LSEGSQPAEEEEDQETPSR 19 Unmodified _LSEGSQPAEEEEDQETPSR_ 0 0 0 0 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.364501953125 3 706.641698 2116.90327 36326.6992648812 1.0042 0.00070963 108100 76.389 108100 76.389 783.364100502659 40.709 0.3715 40.709 40.539 40.911 0 29 12 3 0.831797822119221 0.00182167505436763 0.0108467679041922 7.5605E-09 1 9267 174.82 152.35 1 21470000 16947 17408 17815 17070 13621 16613 14988 16382 17860 33998 16039 16443 17840 17540 14092 16734 15270 17465 17501 32392 1 1 1 1 1 1 1 1 1 1 2894 2180 2552 2696 3227 3227 LSFATCKS 8 Phospho (STY) _LSFATCKS(ph)_ LSFAT(0.021)CKS(0.979) LS(-55.44)FAT(-16.65)CKS(16.65) 0 0 1 1 Q9NYP9 Q9NYP9 Q9NYP9 MIS18A Protein Mis18-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.375122070313 2 497.209193 992.403833 36490.9865226172 2.2822 0.0011348 460900 229.16 460900 229.17 726.374875792965 71.166 0.457 71.166 70.944 71.401 0 29 15 2 0.845273474945712 0.000993158266422222 0.0244300337248781 0.023936 1 16704 65.395 37.87 3 12484000 25595 14794 25439 14011 11801 29199 14832 20391 16114 21889 24219 13971 25463 14677 12825 28521 14988 21454 15845 21083 1 1 1 1 1 1 1 1 1 1 2895 2076 2553 2697 3228 3228 3761 LSFSPENILIQNQDIVR 17 Phospho (STY) _LSFS(ph)PENILIQNQDIVR_ LS(0.019)FS(0.981)PENILIQNQDIVR LS(-17.13)FS(17.13)PENILIQNQDIVR 0 0 1 0 Q9Y2F5 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.074157714844 3 689.348783 2065.02452 34998.8166874391 1.1993 0.00082674 110810 76.388 110810 76.388 766.071258863973 101.17 0.20047 101.17 101.1 101.3 0 18 6 4 0.946922961531377 0.00505486472448774 0.0975021358199473 7.1309E-06 1 23749 136.14 105.14 2 37548000 6959.5 7407.6 8669.3 5932.2 6268.9 6995.7 6781.3 8109.4 8134.6 62963 6591.9 6989.3 8602.8 6198.1 6512 7097.2 6915.2 9988.4 7969 59475 1 1 1 1 1 1 1 1 1 1 2896 2243 2554 2698 3229 3229 4140 LSGEMPPASPSFPR 14 Oxidation (M),Phospho (STY) _LSGEM(ox)PPAS(ph)PSFPR_ LSGEM(1)PPASPSFPR LSGEMPPAS(0.964)PS(0.036)FPR LSGEM(74.81)PPASPSFPR LS(-49.37)GEMPPAS(14.27)PS(-14.27)FPR 0 1 1 0 Q96JM7 Q96JM7 Q96JM7 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.953918457031 3 523.565341 1567.67419 40791.0350648041 1.5713 0.0008227 145900 76.388 145900 76.388 600.287401476247 63.435 0.7005 63.435 63.11 63.811 0 69 23 4 0.971931811164386 0.000909156280257697 0.011489131009794 0.010067 1 14956 74.812 56.422 3 13919000 5046.1 5503.7 6014.7 5335.4 5887.2 5398.6 4942.6 5169.4 4851.4 3401 4778.5 5198.2 5997.5 5489.5 5968.5 5412 5074 5296.7 4790.8 3322.1 1 1 1 1 1 1 1 1 1 1 2897 1700 2555 2699 3230 3230 200 3135 LSGFSFKK 8 Phospho (STY) _LSGFS(ph)FKK_ LSGFS(1)FKK LS(-53.31)GFS(53.31)FKK 0 0 1 1 P29966 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 560.994445800781 3 331.831688 992.473233 42117.8892833254 1.5121 0.00050177 690600 229.16 690600 229.16 560.994770000276 81.192 0.75204 81.192 80.87 81.622 0 82 25 5 0.963797633127526 0.00548381259940893 0.102975802329571 0.00082637 1 18964 110.66 67.149 2 89018000 12482 5112.3 13783 4439.9 40455 14052 43922 20813 4604.5 4946.2 11816 4825.6 14137 4754.2 39491 13750 43465 20764 6210.8 5139.1 1 1 1 1 1 1 1 1 1 1 2898 504 2556 2700 3231 3231 834 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 Phospho (STY) _LSGINEIPRPFS(ph)PPVTSNTSPPPAAPLAR_ LSGINEIPRPFS(0.972)PPVT(0.017)S(0.005)NT(0.005)S(0.001)PPPAAPLAR LS(-42.26)GINEIPRPFS(17.52)PPVT(-17.52)S(-23.09)NT(-23.09)S(-28.51)PPPAAPLAR 0 0 1 1 Q0JRZ9 Q0JRZ9 Q0JRZ9 FCHO2 F-BAR domain only protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1098.58203125 3 1021.86029 3062.55904 30975.2632243566 1.4978 0.0015306 74754 76.388 74755 76.389 1098.58365936527 91.923 0.77432 91.923 91.452 92.226 0 81 26 5 0.923404186761211 0.000821216232755059 0.022959198293517 0.007781 2 21478 80.112 65.067 6 15068000 5457.1 5161 5443.7 5806 5546.8 5339.7 7322.6 7292.3 5239.4 52015 5163.8 4879.1 5486.9 5914.5 5646 5495.5 7311.5 8806.3 5258.1 49147 2 2 2 2 2 2 2 2 2 2 2899 897 2557 2701 3232;3233 3233 1480 LSGLSFK 7 Phospho (STY) _LS(ph)GLSFK_ LS(1)GLSFK LS(38.93)GLS(-38.93)FK 0 0 1 0 P49006 P49006 P49006 MARCKSL1 MARCKS-related protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.36669921875 2 416.204237 830.393921 40722.9486885275 2.806 0.0011679 550600 229.16 550600 229.16 645.366918780707 90.029 0.55783 90.029 89.75 90.307 0 56 18 4 0.925692389286034 0.00273294676820841 0.126321843945024 0.031449 1 20973 60.398 6.6415 2 17811000 9687.9 34479 7916.6 34975 8890 7162.4 8522.6 18634 39149 11001 9160.6 32574 8084.6 35434 8987.8 8585.1 9531.6 18578 37330 10790 1 1 1 1 1 1 1 1 1 1 2900 631 2558 2702 3234 3234 1044;1045 LSGLSFKR 8 Phospho (STY) _LSGLS(ph)FKR_ LSGLS(1)FKR LS(-37.87)GLS(37.87)FKR 0 0 1 1 P49006 P49006 P49006 MARCKSL1 MARCKS-related protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 482.614318847656 3 329.838954 986.495032 44636.8569398888 1.0824 0.00035703 463180 152.78 463180 152.78 482.614626010909 70.899 1.6853 70.899 70.567 72.252 0 190 57 6 0.994368077668198 0.00391903052064755 0.0323743271346104 0.013831 1 16583 67.93 32.22 2 1879700000 17238 35875 17061 31460 8613 15500 10478 18991 34212 1445.3 16311 33865 17090 32315 9288.1 16295 11227 18957 32751 1800.4 1 1 1 1 1 1 1 1 1 1 2901 631 2559 2703 3235 3235 1044;1045 LSLRSVPK 8 2 Phospho (STY) _LS(ph)LRS(ph)VPK_ LS(1)LRS(1)VPK LS(43.03)LRS(43.03)VPK 0 0 2 1 REV__Q92730 REV__Q92730 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.418334960938 2 530.253608 1058.49266 37141.0806288679 1.9758 0.0010477 432180 229.16 432180 229.17 759.417986958864 69.932 0.46135 69.932 69.669 70.13 0 36 15 3 0.906658666934473 0.00131162360859944 0.0182355981350353 0.056604 1 16403 43.027 13.679 1 11794000 13706 13923 14854 10721 15175 13538 13806 13509 12537 15085 12973 13134 14893 11248 15360 13472 14084 14006 12424 14517 1 1 1 1 1 1 1 1 1 1 + 2902 2344 2560 2704 3236 3236 4300;4301 LSLSPLR 7 Phospho (STY) _LSLS(ph)PLR_ LSLS(1)PLR LS(-35.92)LS(35.92)PLR 0 0 1 0 Q66K74 Q66K74 Q66K74 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.812255859375 2 433.230786 864.447019 42437.0940538671 1.178 0.00051033 264480 114.58 264480 114.58 547.812581928378 79.716 1.2461 79.716 79.334 80.58 0 139 42 6 0.983386862204684 0.0055426574598716 0.395722997115034 0.00068522 1 18626 128.57 10.688 2 450710000 19221 11534 17165 11626 5798.5 16149 6428.5 10952 11645 1410.2 18180 10896 17264 12005 6569.3 15923 6656.3 11230 11269 1581.4 1 1 1 1 1 1 1 1 1 1 2903 1224 2561 2705 3237 3237 2159 LSLTDPLVAER 11 Phospho (STY) _LS(ph)LTDPLVAER_ LS(0.965)LT(0.035)DPLVAER LS(14.35)LT(-14.35)DPLVAER 0 0 1 0 P13224 P13224 P13224 GP1BB Platelet glycoprotein Ib beta chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.908020019531 2 647.326143 1292.63773 36298.5285974335 1.9222 0.0012443 177010 114.58 177010 114.58 761.907418459359 92.064 0.7165 92.064 91.766 92.483 0 71 24 4 0.990499525718777 0.00178199465760214 0.0814374859443865 3.6024E-10 1 21417 192.71 145.15 2 36197000 5626.5 19043 5425.1 19273 9523.6 4911.2 8664.6 12787 19523 18792 5323.4 17991 5522.9 19544 9420.7 5698 9158.4 13088 18803 17991 1 1 1 1 1 1 1 1 1 1 2904 375 2562 2706 3238 3238 612 LSLVIRSPSLLQSGAK 16 Phospho (STY) _LSLVIRS(ph)PSLLQSGAK_ LS(0.171)LVIRS(0.738)PS(0.091)LLQSGAK LS(-6.36)LVIRS(6.36)PS(-9.11)LLQS(-35.26)GAK 0 0 1 1 Q9BQG0 Q9BQG0 Q9BQG0 MYBBP1A Myb-binding protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.7724609375 3 583.660522 1747.95974 41720.4090860091 1.7527 0.001023 261760 152.78 261760 152.78 736.77179096374 91.8 0.54322 91.8 91.598 92.142 0 45 18 4 0.692464707171839 0.00230099588229181 0.050237037387605 0.038741 1 21392 47.472 31.947 4 8377000 7949.6 12343 8119.7 15137 9437.4 8146.6 10427 11247 15533 28691 7523 11676 8184.3 15260 9518.1 8570.6 10706 12025 15110 27277 1 1 1 1 1 1 1 1 1 1 2905 1807 2563 2707 3239 3239 3312;3315;3316 LSMEDSKSPPPK 12 Phospho (STY) _LSMEDSKS(ph)PPPK_ LS(0.015)MEDS(0.069)KS(0.915)PPPK LS(-17.75)MEDS(-11.22)KS(11.22)PPPK 0 0 1 1 Q9NQG5 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.376525878906 3 465.879037 1394.61528 37315.2040895046 2.0289 0.00094522 491890 229.16 491900 229.16 695.042145867748 58.217 1.3118 58.217 57.534 58.846 0 161 44 5 0.982178104810782 0.00195450578686697 0.0192820055826686 0.0095234 1 13539 72.446 43.118 3 71182000 15076 16761 14965 16277 13588 15059 12464 15207 16085 7239.2 14265 15831 15056 16723 13858 15164 12840 15466 15717 7168.5 1 1 1 1 1 1 1 1 1 1 2906 2004 2564 2708 3240 3240 3638 LSMPQSAAVSTTPPHNR 17 Phospho (STY) _LSMPQSAAVSTT(ph)PPHNR_ LSMPQSAAVS(0.012)T(0.303)T(0.685)PPHNR LS(-79.12)MPQS(-65.86)AAVS(-17.74)T(-3.54)T(3.54)PPHNR 0 0 1 0 Q86X10 Q86X10 Q86X10 RALGAPB Ral GTPase-activating protein subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.015380859375 3 625.292392 1872.85535 36657.18325216 1.527 0.0009548 122170 76.389 122170 76.39 701.681948983524 57.091 0.79153 57.091 56.572 57.363 0 47 26 3 0.894996423290159 0.00142768393081509 0.00704179322423291 0.0065731 1 13330 90.174 60.08 5 14572000 8777.1 10011 9422.7 11060 10026 9429.7 9327.4 9727.5 11131 7042.9 8307.8 9462.6 9457 11266 10131 9541.7 9577.4 9958 10907 6856.9 1 1 1 1 1 1 1 1 1 1 2907 1393 2565 2709 3241 3241 4649 LSPANQR 7 Phospho (STY) _LS(ph)PANQR_ LS(1)PANQR LS(66.3)PANQR 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.781066894531 2 433.200017 864.385481 41836.6391553288 0.512 0.0002218 264500 114.58 264500 114.58 547.781339099997 34.194 0.46635 34.194 33.962 34.428 -7.1054E-15 26 15 2 0.773346709203525 0.00137613065647261 0.0136623706699204 0.022802 1 7682 66.299 40.472 1 37310000 18041 19360 20255 19233 22135 17002 18769 19389 20080 3434.2 17080 18288 20285 19720 22306 17178 19303 19460 19757 3682.4 1 1 1 1 1 1 1 1 1 1 2908 942 2566 2710 3242 3242 1563 LSPATPTSEGPK 12 Phospho (STY) _LSPAT(ph)PTSEGPK_ LS(0.019)PAT(0.974)PT(0.006)SEGPK LS(-17.03)PAT(17.03)PT(-21.89)S(-51.51)EGPK 0 0 1 0 Q8N1G0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.970581054688 3 422.198876 1263.5748 43853.777580262 2.1104 0.00089099 361850 152.77 361850 152.77 575.306156462941 53.549 0.30024 53.549 53.385 53.685 0 19 9 3 0.453237909725531 0.000456118713337533 0.00509121295704481 0.00017705 1 12490 111.12 80.678 4 6804000 8827.8 10638 8389.4 11915 10595 9379.9 10024 9136.7 11613 3647.7 8351.8 10057 8498.8 12115 10615 9518.9 10274 9284.1 11392 3646.2 1 1 1 1 1 1 1 1 1 1 2909 1455 2567 2711 3243 3243 4672 LSPCLHR 7 Phospho (STY) _LS(ph)PCLHR_ LS(1)PCLHR LS(104.2)PCLHR 0 0 1 0 Q9C073 Q9C073 Q9C073 FAM117A Protein FAM117A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 397.868194580078 3 321.480772 961.420486 51112.7254221164 -0.56094 -0.00018033 237610 76.388 237610 76.388 398.202830715156 45.351 0.43299 45.351 45.093 45.526 0 23 14 2 0.932791397109642 0.00128151916345566 0.00721846886451914 0.0013177 1 10424 104.2 73.127 1 17224000 8088.4 8526.9 9347.4 8956 13701 8904.3 13891 9763.8 9155 335.25 7658.4 8057.5 9393.6 9168.7 13645 8938.9 14001 9770.6 9234.1 541.65 1 1 1 1 1 1 1 1 1 1 2910 1882 2568 2712 3244 3244 3423 LSPENNQVLTK 11 Phospho (STY) _LS(ph)PENNQVLTK_ LS(1)PENNQVLTK LS(124.75)PENNQVLT(-124.75)K 0 0 1 0 Q16514 Q16514 Q16514 TAF12 Transcription initiation factor TFIID subunit 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.326477050781 3 441.549909 1321.6279 40217.7894827515 1.7405 0.0007685 346000 152.78 346000 152.78 594.325340635976 66.627 0.51707 66.627 66.374 66.891 0 55 17 4 0.991402756649927 0.00403058439867881 0.0706624335515644 7.0527E-07 1 15640 144.8 113.73 2 20394000 8791 11441 8804.7 12099 9351.9 8799.7 9022.2 10196 13182 2473.4 8318.6 10811 8871.1 12330 9457.3 8989.8 9313.6 10248 12830 2565 1 1 1 1 1 1 1 1 1 1 2911 1104 2569 2713 3245 3245 1925 LSPEVAPPAHR 11 Phospho (STY) _LS(ph)PEVAPPAHR_ LS(1)PEVAPPAHR LS(101.53)PEVAPPAHR 0 0 1 0 Q8TAD8 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 494.928314208984 3 418.539455 1252.59654 44423.1608482314 0.35139 0.00014707 182510 76.388 182510 76.388 494.927504384487 47.025 0.43584 47.025 46.742 47.178 7.1054E-15 47 14 5 0.966277472788462 0.00425344105065889 0.0526545104235737 0.00017527 1 10857 101.53 76.741 1 29829000 7849.9 9406 8481 9218.6 7098 9300.7 7931.1 8470.1 9994.5 2557.6 7430.4 8884.5 8488.3 9478.1 7298.5 9313.3 8089.7 8605.3 9774.1 2604.3 1 1 1 1 1 1 1 1 1 1 2912 1531 2570 2714 3246 3246 2812 LSPGESAYQK 10 Phospho (STY) _LS(ph)PGESAYQK_ LS(1)PGESAYQK LS(67.49)PGES(-67.49)AY(-149.18)QK 0 0 1 0 Q6NYC8 Q6NYC8 Q6NYC8 PPP1R18 Phostensin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.418273925781 2 580.255186 1158.49582 34519.8059988264 2.3094 0.00134 394940 229.16 394940 229.16 809.417764992606 56.764 0.41559 56.764 56.513 56.928 -7.1054E-15 33 13 3 0.9314711579904 0.00178112228380143 0.061806993340954 4.8322E-10 1 13240 205.09 146.02 3 21603000 17701 25826 16558 22505 18181 18763 18238 20426 24885 11450 16746 24378 16758 23250 18361 19016 18744 20770 24273 11254 1 1 1 1 1 1 1 1 1 1 2913 1250 2571 2715 3247 3247 2214 LSPGSYPTVIQQQNATSQR 19 Phospho (STY) _LS(ph)PGSYPTVIQQQNATSQR_ LS(1)PGSYPTVIQQQNATSQR LS(34.34)PGS(-34.34)Y(-90.02)PT(-121.33)VIQQQNAT(-237.98)S(-240.3)QR 0 0 1 0 Q13469 Q13469 Q13469 NFATC2 Nuclear factor of activated T-cells, cytoplasmic 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.735717773438 3 719.01083 2154.01066 34798.0658862817 1.8107 0.0013019 106240 76.388 106240 76.389 795.733201823689 71.036 0.45858 71.036 70.855 71.314 0 42 15 3 0.99118248424955 0.00403167486803462 0.0206178334627956 1.2124E-16 1 16661 243.23 207.12 6 38312000 10861 11135 10077 10573 9200.2 10694 9560.7 11307 12044 16688 10275 10515 10182 10893 9395.6 10753 9782.7 11821 11778 15975 1 1 1 1 1 1 1 1 1 1 2914 959 2572 2716 3248 3248 1612 LSPGTDSSSNLGGVK 15 Phospho (STY) _LS(ph)PGTDSSSNLGGVK_ LS(0.994)PGT(0.006)DSSSNLGGVK LS(22.14)PGT(-22.14)DS(-40.55)S(-44.89)S(-49.23)NLGGVK 0 0 1 0 Q7Z3B3 Q7Z3B3 Q7Z3B3 KANSL1 KAT8 regulatory NSL complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.007202148438 2 749.842885 1497.67122 31595.1602690051 1.8201 0.0013648 305610 229.16 305620 229.16 979.005401725103 64.1 0.46091 64.1 63.867 64.328 0 38 15 3 0.928920333185711 0.000462205524875669 0.00581637487712638 1.2014E-08 1 15086 175.7 112.9 5 22403000 13377 13461 13518 13760 12390 14107 12118 12371 16493 14099 12658 12717 13589 14116 12640 14129 12468 12901 16088 13562 1 1 1 1 1 1 1 1 1 1 2915 1330 2573 2717 3249 3249 2395 LSPIPEEVPK 10 Phospho (STY) _LS(ph)PIPEEVPK_ LS(1)PIPEEVPK LS(142.08)PIPEEVPK 0 0 1 0 Q96T23 Q96T23 Q96T23 RSF1 Remodeling and spacing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.963256835938 2 594.79923 1187.58391 35571.6939550679 2.6735 0.0015902 385280 229.16 385280 229.16 823.961228592508 78.027 0.45214 78.027 77.809 78.261 0 43 15 4 0.616601247661659 0.00254531286613834 0.0643174617478623 3.6574E-06 1 18284 142.08 101.37 1 26695000 18103 27590 19559 25305 29566 18290 32453 27405 30243 108770 17136 26050 19739 26009 29451 18965 32835 30413 29935 103050 1 1 1 1 1 1 1 1 1 1 2916 1754 2574 2718 3250 3250 3215 LSPLPPGSPGSAAR 14 Phospho (STY) _LSPLPPGS(ph)PGSAAR_ LS(0.001)PLPPGS(0.911)PGS(0.088)AAR LS(-28.68)PLPPGS(10.15)PGS(-10.15)AAR 0 0 1 0 Q6ZN18 Q6ZN18 Q6ZN18 AEBP2 Zinc finger protein AEBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.926879882813 2 693.842491 1385.67043 34963.6512599406 2.1383 0.0014837 165140 114.58 165140 114.58 808.423380925061 63.485 0.90653 63.485 62.932 63.839 0 74 30 3 0.970602364251692 0.000390648515717911 0.00789475456813893 0.031864 1 14951 60.345 25.537 3 7933500 9393.2 7733.3 11051 7315.2 10842 10229 10055 11147 8135.2 13024 8894.5 7303 11028 7583.3 11002 10159 10221 11538 8108.4 12522 1 1 1 1 1 1 1 1 1 1 2917 1291 2575 2719 3251 3251 2305 LSPQDPRPLSPGALQLAGEK 20 Phospho (STY) _LSPQDPRPLS(ph)PGALQLAGEK_ LSPQDPRPLS(1)PGALQLAGEK LS(-65.71)PQDPRPLS(65.71)PGALQLAGEK 0 0 1 1 Q8TEK3 Q8TEK3 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.814880371094 3 718.703338 2153.08818 33894.6075135574 2.0673 0.0014857 212570 152.78 212570 152.78 871.813231369518 82.027 0.43421 82.027 81.795 82.23 -1.4211E-14 49 14 4 0.810062971027947 0.00662271512927674 0.179528771092954 2.2524E-05 1 19188 126.5 110.61 2 27747000 15943 19739 15995 18087 16302 16240 14826 15597 19526 17757 15087 18637 16104 18642 16508 16386 15291 16205 19067 17081 1 1 1 1 1 1 1 1 1 1 2918 1552 2576 2720 3252 3252 2849 LSPSPSSR 8 Phospho (STY) _LSPS(ph)PSSR_ LS(0.037)PS(0.961)PS(0.002)SR LS(-14.16)PS(14.16)PS(-27.21)S(-45.53)R 0 0 1 0 Q03252;P20700 Q03252;P20700 P20700 LMNB2;LMNB1 Lamin-B2;Lamin-B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.287719726563 2 455.705132 909.395711 40227.757326554 1.5941 0.00072642 251440 114.58 251440 114.58 570.287541076643 36.111 0.57867 36.111 35.821 36.4 0 60 19 4 0.986381086292206 0.00818390620296228 0.124182361792551 0.00060171 1 8147 124.95 75.399 4 109720000 65813 61666 61590 61891 43048 68042 41268 63509 66864 748.42 62260 58255 62030 63633 44779 67872 42794 63902 64889 2174.5 1 1 1 1 1 1 1 1 1 1 2919 859;448 2577 2721 3253 3253 724;725;726 LSPSPTSQR 9 Phospho (STY) _LSPS(ph)PTSQR_ LSPS(1)PTSQR LS(-60.76)PS(43.17)PT(-43.17)S(-60.76)QR 0 0 1 0 P02545 P02545 P02545 LMNA Prelamin-A/C;Lamin-A/C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.323791503906 2 526.742246 1051.46994 38670.8856992068 1.5946 0.00083994 217530 114.58 217530 114.58 641.323660272978 37.672 0.65313 37.672 37.44 38.093 0 63 22 3 0.995327998551452 0.00358848751187226 0.0163141653753078 4.3823E-09 1 8493 184.27 125.57 4 260610000 19511 65862 19776 67996 14408 15471 13478 35230 70220 2837.9 18463 62230 19830 68842 14979 18105 15318 34659 66879 3487.6 1 1 1 1 1 1 1 1 1 1 2920 285 2578 2722 3254 3254 473;474 LSPTSLVHPVMSTLPELSCK 20 Phospho (STY) _LSPT(ph)SLVHPVMSTLPELSCK_ LS(0.27)PT(0.365)S(0.365)LVHPVMSTLPELSCK LS(-1.31)PT(0)S(0)LVHPVMS(-54.49)T(-54.49)LPELS(-60.95)CK 0 0 1 0 Q9UGP4 Q9UGP4 Q9UGP4 LIMD1 LIM domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.489685058594 3 759.373724 2275.09934 33327.2747511789 2.2887 0.001738 201190 152.78 201190 152.78 912.486212213681 100.23 0.1129 100.23 100.17 100.28 -1.4211E-14 9 3 4 0.525250293791337 0.000133103924234881 0.00292691002098386 0.021006 1 23410 65.854 41.567 6 29149000 12508 12497 8330 12502 9344.9 11688 11467 14830 13213 60291 11820 11806 8644.5 12823 9455 11905 11619 16571 12963 57114 1 1 1 1 1 1 1 1 1 1 2921 2139 2579 2723 3255 3255 3848;4802 LSPVPVPR 8 Phospho (STY) _LS(ph)PVPVPR_ LS(1)PVPVPR LS(63.82)PVPVPR 0 0 1 0 Q9UKM9 Q9UKM9 Q9UKM9 RALY RNA-binding protein Raly MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 587.334716796875 2 472.751885 943.489218 41032.7446118814 1.8147 0.00085792 242370 114.58 242370 114.58 587.334019003294 66.388 0.55432 66.388 66.11 66.664 0 44 18 3 0.721652626468003 0.000646990495947697 0.0213497553529372 0.022529 1 15635 63.816 45.997 1 15833000 9068.4 10687 8547.6 10529 10297 8746.8 11331 11210 11193 7296.3 8579.1 10095 8660.2 10792 10360 8891.5 11480 11369 11050 7129.8 1 1 1 1 1 1 1 1 1 1 2922 2177 2580 2724 3256 3256 3926 LSQMQSPIPLTETR 14 Phospho (STY) _LSQMQS(ph)PIPLTETR_ LSQMQS(0.997)PIPLT(0.003)ETR LS(-78.82)QMQS(24.63)PIPLT(-24.63)ET(-65.58)R 0 0 1 0 Q2VPK5 Q2VPK5 Q2VPK5 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 955.4892578125 2 840.904963 1679.79537 31037.254179958 1.5847 0.0013326 136260 114.58 136260 114.58 955.485740668695 76.674 0.55294 76.674 76.417 76.969 0 63 18 5 0.885147741764998 0.00166638546489103 0.0656330534171441 9.1421E-16 1 17978 231.15 208.16 4 21597000 8151.9 20416 9240.7 18932 4985.2 8332.6 4178.6 12012 21722 18139 7717.8 19278 9188.7 19359 5315.4 8905.6 4772.7 12453 20689 17358 1 1 1 1 1 1 1 1 1 1 2923 1124 2581 2725 3257 3257 1958 LSQPESAEK 9 Phospho (STY) _LS(ph)QPESAEK_ LS(1)QPESAEK LS(40.82)QPES(-40.82)AEK 0 0 1 0 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.895568847656 2 534.734087 1067.45362 36438.1844913285 1.8041 0.00096469 428550 229.16 428550 229.16 763.894555105069 47.914 0.4101 47.914 47.656 48.066 7.1054E-15 31 13 3 0.932022711858678 0.00171327400698119 0.0241375962857005 0.00069821 1 11116 101.33 62.573 2 21604000 27541 33630 30359 34338 75099 30634 77890 45564 27200 13959 26071 31773 30961 35154 73561 31084 77763 45546 28988 14199 1 1 1 1 1 1 1 1 1 1 2924 2180 2582 2726 3258 3258 3935 LSQSGEVGEPAGTDPGLDDLDVALSNLEVK 30 Unmodified _LSQSGEVGEPAGTDPGLDDLDVALSNLEVK_ 0 0 0 0 Q86UX7 Q86UX7 Q86UX7 FERMT3 Fermitin family homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1162.27990722656 3 1009.16645 3024.47752 29651.3135133955 1.475 0.0014885 151390 152.78 151390 152.78 1162.27742422352 100.88 0.14231 100.88 100.78 100.93 0 12 4 5 0.934843766441719 0.00463754665529519 0.0863247436685843 8.975E-18 1 23646 222.95 198.08 1 48285000 6197 10138 6870.8 9457.5 17791 6602.7 20624 13864 11769 56413 5866.5 9573 7018.8 9706.4 17441 6942.9 20615 15325 11988 53440 1 1 1 1 1 1 1 1 1 1 2925 1375 2583 2727 3259 3259 LSQSSQDSSPVR 12 Phospho (STY) _LSQSSQDSS(ph)PVR_ LSQSSQDS(0.007)S(0.993)PVR LS(-101.11)QS(-61.15)S(-49.76)QDS(-21.24)S(21.24)PVR 0 0 1 0 O95251 O95251 O95251 KAT7 Histone acetyltransferase KAT7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.885375976563 2 685.80102 1369.58749 35036.9541988081 1.8535 0.0012711 167080 114.58 167080 114.58 800.382384481034 36.144 0.57697 36.144 35.88 36.457 0 64 19 4 0.990296004149944 0.00220564920997082 0.0415922604825468 8.4672E-05 1 8120 126.32 75.055 5 69460000 19201 19977 22084 19161 11999 22127 12821 19232 21469 4764.4 18180 18867 21949 19772 12792 22019 13248 19547 20816 4931.3 1 1 1 1 1 1 1 1 1 1 2926 239 2584 2728 3260 3260 410 LSQTFLQLSDGDKK 14 Phospho (STY) _LS(ph)QTFLQLSDGDKK_ LS(0.999)QT(0.001)FLQLSDGDKK LS(29.94)QT(-29.94)FLQLS(-62.57)DGDKK 0 0 1 1 Q92608 Q92608 Q92608 DOCK2 Dedicator of cytokinesis protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.101196289063 3 553.937832 1658.79167 36849.0932936355 2.1436 0.0011874 413700 229.16 413700 229.16 783.434328332334 94.02 0.43099 94.02 93.793 94.224 1.4211E-14 35 14 3 0.662697770304795 0.00102125440779319 0.0348299215110444 0.00016537 1 21892 110.33 85.919 3 6233100 9340.4 3407.5 10140 4127.3 8349.5 10306 10065 9700.5 3533.4 17546 8841.4 3223 10146 4293.1 8596.9 10080 9983.8 10282 3763.4 16746 1 1 1 1 1 1 1 1 1 1 2927 1605 2585 2729 3261 3261 2949 LSRSPLK 7 Phospho (STY) _LSRS(ph)PLK_ LS(0.007)RS(0.993)PLK LS(-21.41)RS(21.41)PLK 0 0 1 1 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 446.934722900391 3 294.159916 879.457918 47347.0589378541 0.33758 9.9303E-05 519360 152.78 519360 152.78 446.93486103911 48.677 0.63227 48.677 48.392 49.024 0 53 21 3 0.877489976972494 0.0016141754345329 0.0147027479096912 0.010654 1 11257 74.533 31.507 2 64865000 60820 3942.2 61203 5087.3 3773.3 56962 5523.8 24576 4399.6 903.18 57552 3730.6 60906 5987.1 7243.8 54376 5507.9 25934 4388.8 1419.2 1 1 1 1 1 1 1 1 1 1 2928 2248 2586 2730 3262 3262 4152 LSSAGPRSPYCK 12 Phospho (STY) _LSSAGPRS(ph)PYCK_ LSS(0.001)AGPRS(0.996)PY(0.004)CK LS(-42.51)S(-31.91)AGPRS(24.52)PY(-24.52)CK 0 0 1 1 Q6PL18 Q6PL18 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.98681640625 3 468.21101 1401.6112 39367.9745403799 1.2761 0.00059748 326300 152.78 326300 152.78 620.986362585717 47.836 0.52469 47.836 47.541 48.066 0 67 17 5 0.971230553768078 0.0056740662182382 0.094548251987186 0.00014144 1 11066 103.6 81.39 4 87707000 49924 24011 54627 22816 14385 52458 17349 29639 27574 6524.4 47258 22675 54249 23976 17026 50984 17797 30811 26774 6829.5 1 1 1 1 1 1 1 1 1 1 2929 1274 2587 2731 3263 3263 2268;2269 LSSAGPRSPYCK 12 2 Phospho (STY) _LSS(ph)AGPRS(ph)PYCK_ LS(0.173)S(0.827)AGPRS(0.958)PY(0.042)CK LS(-6.84)S(6.84)AGPRS(13.8)PY(-13.8)CK 0 0 2 1 Q6PL18 Q6PL18 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.64306640625 3 494.866453 1481.57753 38956.3042329741 1.2137 0.00060064 308720 152.78 308720 152.78 647.976802016555 52.105 0.51453 52.105 51.892 52.406 0 40 17 4 0.973377241547936 0.000862559814387964 0.0069972203522794 0.0083596 1 12118 79.326 54.534 6 15615000 17528 8851.5 19256 10197 8694.4 20024 8009.7 13082 11376 5349.3 16592 8369.4 19159 10546 9440.2 19555 8278.3 13552 11082 5339.8 1 1 1 1 1 1 1 1 1 1 2930 1274 2587 2732 3264 3264 2268;2269 LSSETGGMGSS 11 Oxidation (M),Phospho (STY) _LSSETGGM(ox)GS(ph)S_ LSSETGGM(1)GSS LSSETGGMGS(0.5)S(0.5) LSSETGGM(101.48)GSS LS(-93.11)S(-90)ET(-78.53)GGMGS(0)S(0) 0 1 1 0 Q15366 Q15366 Q15366 PCBP2 Poly(rC)-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.27880859375 2 554.696844 1107.37913 38760.7792946264 2.1089 0.0011698 206560 114.58 206570 114.58 669.277535076397 38.844 0.50058 38.844 38.581 39.082 -7.1054E-15 28 16 3 0.302944741673751 0.000737850676136143 0.0263140609423024 0.00025448 1 8829 101.48 97.327 5 8926100 34655 15137 33454 13925 11405 38493 12840 21245 17227 5044.3 32788 14293 33488 14767 12900 37280 13121 22131 16812 5241.5 1 1 1 1 1 1 1 1 1 1 2931 1071 2588 2733 3265 3265 142 1851;1852 LSSETGGMGSS 11 Phospho (STY) _LSSETGGMGS(ph)S_ LSSETGGMGS(0.992)S(0.008) LS(-143.81)S(-138.65)ET(-121.8)GGMGS(21.2)S(-21.2) 0 0 1 0 Q15366 Q15366 Q15366 PCBP2 Poly(rC)-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.281066894531 2 546.699386 1091.38422 39499.6101138146 1.5574 0.00085145 209590 114.58 209590 114.58 661.280652929499 50.261 0.66372 50.261 49.954 50.618 0 49 22 3 0.982663862934957 0.00175397993598599 0.0172782796410137 5.6834E-07 1 11670 160.98 156.62 5 34738000 17844 24736 19069 31856 21660 19920 20616 21511 20334 11373 16890 23408 19161 32083 21813 20541 21028 21858 20075 11207 1 1 1 1 1 1 1 1 1 1 2932 1071 2588 2734 3266 3266 1851;1852 LSSFVTK 7 Phospho (STY) _LSS(ph)FVTK_ LS(0.14)S(0.86)FVTK LS(-7.9)S(7.9)FVT(-48.33)K 0 0 1 0 P27708 P27708 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.374816894531 2 431.209519 860.404485 39602.3450386257 2.8018 0.0012082 531440 229.16 531450 229.16 660.372459904924 79.495 0.48142 79.495 79.279 79.761 0 41 16 3 0.926227148948789 0.00223108400752503 0.157263107405841 0.0043039 1 18617 98.048 29.391 3 14492000 13762 10740 13619 9733.8 15723 12454 18269 13210 11196 8477.4 13022 10140 13752 10099 15861 12387 18281 13477 11347 8288.2 1 1 1 1 1 1 1 1 1 1 2933 489 2589 2735 3267 3267 802;803 LSSFVTK 7 Phospho (STY) _LS(ph)SFVTK_ LS(0.857)S(0.143)FVTK LS(7.77)S(-7.77)FVT(-49.11)K 0 0 1 0 P27708 P27708 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.373168945313 2 431.209519 860.404485 38956.6772098123 1.4761 0.0006365 531440 229.16 531440 229.16 660.3727870883 88.083 0.60418 88.083 87.848 88.452 0 47 20 3 0.993146992460823 0.00352994633350379 0.174503527654507 0.00099502 1 20541 123.6 15.449 3 18369000 7463.2 6704.9 7650.7 5562.6 54804 8111 57637 23571 5260.4 10229 7062.8 6327.3 8275.6 5822.2 52821 8229.4 57099 23353 7411.9 10177 1 1 1 1 1 1 1 1 1 1 2934 489 2589 2735 3268 3268 802;803 LSSKLSAVSLR 11 Phospho (STY) _LSSKLS(ph)AVSLR_ LS(0.057)S(0.202)KLS(0.739)AVS(0.002)LR LS(-11.12)S(-5.62)KLS(5.62)AVS(-25.49)LR 0 0 1 1 Q15036 Q15036 Q15036 SNX17 Sorting nexin-17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 567.002563476563 3 414.226877 1239.6588 41122.9154965504 2.1491 0.00089021 368820 152.77 368820 152.77 567.001606349659 74.97 0.89089 74.97 74.57 75.461 0 71 30 3 0.828646404135567 0.00295372637472263 0.0340073389776138 0.024143 1 17581 54.812 14.933 4 21244000 10186 10108 9533 11587 8058.5 10004 7701.8 9672.3 11578 1851.3 9636.1 9556.7 9618 11782 8263.4 10097 7963.1 9770.6 11260 1967.1 1 1 1 1 1 1 1 1 1 1 2935 1049 2590 2736 3269 3269 1809 LSSLRASTSK 10 Phospho (STY) _LSSLRAST(ph)SK_ LSSLRAS(0.249)T(0.742)S(0.009)K LS(-52.44)S(-53.56)LRAS(-4.73)T(4.73)S(-19.2)K 0 0 1 1 P62753 P62753 P62753 RPS6 40S ribosomal protein S6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.96728515625 3 377.191944 1128.554 43440.1968064311 0.49503 0.00018672 405030 152.78 405030 152.78 529.967114477072 53.059 0.60405 53.059 52.87 53.475 0 54 21 3 0.68405969757501 0.000745008720329892 0.00312250266861775 0.015112 1 12353 82.925 59.605 5 85166000 42282 41536 42655 43203 35332 40324 33528 42423 43141 1856.2 40011 39247 42837 44212 36271 40577 34479 42528 42160 2729.6 1 1 1 1 1 1 1 1 1 1 2936 768 2591 2737 3270 3270 1249;1250;4494 LSSLRASTSKSESSQK 16 2 Phospho (STY) _LSS(ph)LRAST(ph)SKSESSQK_ LS(0.446)S(0.554)LRAS(0.21)T(0.651)S(0.137)KS(0.002)ESSQK LS(-0.95)S(0.95)LRAS(-4.93)T(4.93)S(-6.79)KS(-25.57)ES(-38.02)S(-37.28)QK 0 0 2 2 P62753 P62753 P62753 RPS6 40S ribosomal protein S6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.834289550781 4 464.710415 1854.81255 39816.9899712857 1.3995 0.00065036 369850 171.87 369850 171.87 636.833225617113 52.137 0.68573 52.137 51.863 52.549 0 62 23 4 0.950889895238824 0.00254895858764058 0.0138293664933091 9.8612E-05 1 12124 109.44 90.743 28 32972000 11856 15056 13160 12919 11789 11780 12438 13764 16895 3694.7 11224 14211 13161 13377 12058 11891 12752 13840 16482 3797.5 1 1 1 1 1 1 1 1 1 1 2937 768 2592 2738 3271 3271 1249;1250;4494 LSSPAAFLPACNSPSK 16 Phospho (STY) _LSSPAAFLPACNS(ph)PSK_ LSSPAAFLPACNS(0.97)PS(0.03)K LS(-123.68)S(-123.98)PAAFLPACNS(15.16)PS(-15.16)K 0 0 1 0 Q86YS7 Q86YS7 Q86YS7 C2CD5 C2 domain-containing protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.37744140625 3 576.267184 1725.77972 36491.5682829044 0.96731 0.00055743 265110 152.78 265110 152.78 729.377017637377 88.011 0.86708 88.011 87.529 88.396 0 110 29 5 0.966003123371455 0.00754021217174098 0.0616536727277471 4.9726E-07 1 20480 145.52 129.58 4 82408000 12510 5743.4 14322 7613.9 6026.3 12223 6344.3 10152 6846.1 12253 11844 5436.2 14217 7777.6 6610.3 12043 6456.4 10633 6733.7 11773 1 1 1 1 1 1 1 1 1 1 2938 1403 2593 2739 3272 3272 2545 LSSPIDMTSK 10 Phospho (STY) _LSS(ph)PIDMTSK_ LS(0.007)S(0.993)PIDMTSK LS(-21.4)S(21.4)PIDMT(-71.06)S(-84.44)K 0 0 1 0 Q16649 Q16649 Q16649 NFIL3 Nuclear factor interleukin-3-regulated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.92333984375 2 579.759247 1157.50394 35554.2619883107 2.2697 0.0013159 395270 229.16 395270 229.16 808.92300020938 72.474 0.52717 72.474 72.281 72.809 0 38 17 3 0.84233080487023 0.000910401364756805 0.0251516458253682 6.0722E-07 1 17008 170.4 74.629 4 13045000 24191 28253 24355 29907 11551 23494 12846 19862 29643 17349 22892 26699 24360 30504 12513 23823 13474 20586 28537 16796 1 1 1 1 1 1 1 1 1 1 2939 1111 2594 2740 3273 3273 1937 LSSPISK 7 Phospho (STY) _LSS(ph)PISK_ LS(0.013)S(0.987)PISK LS(-18.71)S(18.71)PIS(-39.54)K 0 0 1 0 Q99728 Q99728 Q99728 BARD1 BRCA1-associated RING domain protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.364990234375 2 406.201694 810.388835 39663.3787598656 1.8963 0.00077029 564160 229.16 564160 229.16 635.364554979319 58.846 0.43721 58.846 58.581 59.018 0 23 14 2 0.795708457237497 0.00176865124977522 0.0402331852176062 0.014083 1 13782 81.263 11.889 3 13697000 22615 17780 20963 19711 15894 24730 14814 19483 18884 8877.1 21393 16807 21139 20201 16417 24515 15242 20014 18460 8809.7 1 1 1 1 1 1 1 1 1 1 2940 1786 2595 2741 3274 3274 3294 LSSPVKRPR 9 Phospho (STY) _LS(ph)SPVKRPR_ LS(0.5)S(0.5)PVKRPR LS(0)S(0)PVKRPR 0 0 1 2 P26358 P26358 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 526.648376464844 3 373.872657 1118.59614 43374.6944166416 1.3068 0.00048858 408630 152.78 408630 152.78 526.648061564642 37.91 0.69955 37.91 37.597 38.297 -7.1054E-15 80 23 5 0.980571637343175 0.017046216056245 0.241098167019536 0.014634 1 8579 72.152 36.714 2 131050000 80131 38434 89552 39333 42070 77927 44231 59718 50612 4230.9 75860 36313 89055 40952 45533 76168 45094 60735 49668 5366 1 1 1 1 1 1 1 1 1 1 2941 479 2596 2742 3275 3275 791;792 LSSPVLHR 8 Phospho (STY) _LSS(ph)PVLHR_ LS(0.003)S(0.997)PVLHR LS(-25.65)S(25.65)PVLHR 0 0 1 0 Q16643 Q16643 Q16643 DBN1 Drebrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.334655761719 2 494.752417 987.490281 39821.0532109327 0.98873 0.00048917 231590 114.58 231590 114.58 609.33371166459 48.678 1.1196 48.678 48.305 49.425 0 124 38 5 0.952292283141791 0.00353213714822685 0.120720388302641 1.2487E-07 1 11241 175.91 104.22 2 1141200000 26081 23030 22682 22725 26597 23945 32736 28985 20960 4154.5 24667 21754 23094 23372 26835 24018 32706 29004 21180 4582.8 1 1 1 1 1 1 1 1 1 1 2942 1110 2597 2743 3276 3276 1934 LSSQISAGEEK 11 Phospho (STY) _LSSQIS(ph)AGEEK_ LSSQIS(1)AGEEK LS(-74.66)S(-41.42)QIS(41.42)AGEEK 0 0 1 0 Q86UE4 Q86UE4 Q86UE4 MTDH Protein LYRIC MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.941040039063 2 614.776483 1227.53841 34135.2121094238 2.1144 0.0012999 372760 229.16 372760 229.16 843.939360980874 56.861 0.79153 56.861 56.572 57.363 -7.1054E-15 54 26 3 0.935084719751379 0.0042664645651876 0.128979874253206 2.6122E-10 1 13276 198.38 150.2 3 59424000 55157 36682 53177 37202 59019 51478 67794 52742 40746 12048 52186 34655 53748 38395 59646 51000 67846 53218 41351 12566 1 1 1 1 1 1 1 1 1 1 2943 1369 2598 2744 3277 3277 2481 LSSQISAGEEKWNSVSPASAGK 22 Phospho (STY) _LSSQIS(ph)AGEEKWNSVSPASAGK_ LS(0.047)S(0.043)QIS(0.91)AGEEKWNSVSPASAGK LS(-12.87)S(-13.3)QIS(12.87)AGEEKWNS(-39.91)VS(-45.47)PAS(-47.91)AGK 0 0 1 1 Q86UE4 Q86UE4 Q86UE4 MTDH Protein LYRIC MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1001.53216552734 3 771.6968 2312.06857 32877.5825661739 1.9324 0.0014912 296960 229.16 296960 229.16 1001.19331515744 80.739 0.29025 80.739 80.52 80.81 0 13 9 2 0.947578630176253 0.000460525000482625 0.015759263185848 0.0086937 1 18889 78.45 63.029 6 9410500 5254.6 4396.8 6030.1 5104.5 7280.3 6706.9 9266.1 6922.5 4762.2 18994 4975.1 4157.5 6046.4 5223.7 7338.1 6689.7 9213.4 7507.8 4889.9 18045 1 1 1 1 1 1 1 1 1 1 2944 1369 2599 2745 3278 3278 2481 LSSTDDGYIDLQFK 14 Phospho (STY) _LSS(ph)TDDGYIDLQFK_ LS(0.056)S(0.793)T(0.152)DDGYIDLQFK LS(-11.52)S(7.18)T(-7.18)DDGY(-142.12)IDLQFK 0 0 1 0 Q96A57 Q96A57 Q96A57 TMEM230 Transmembrane protein 230 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.026245117188 3 561.250076 1680.7284 37005.5857975965 2.0165 0.0011318 272210 152.78 272210 152.78 714.359741457844 97.405 1.969 97.405 96.894 98.863 0 256 67 6 0.979364289821046 0.00949259471358016 0.0946415968885756 1.0393E-22 3 22728 254.56 199.35 4 183240000 18514 14292 20094 14344 22253 18854 25794 21249 13157 161130 17525 13501 20176 14797 22493 19031 25740 26076 13518 152220 3 3 3 3 3 3 3 3 3 3 2945 1643 2600 2746 3279;3280;3281 3280 3037 LSSTPPLSALGR 12 Phospho (STY) _LSS(ph)TPPLSALGR_ LS(0.001)S(0.499)T(0.499)PPLSALGR LS(-26.04)S(0)T(0)PPLS(-74.13)ALGR 0 0 1 0 Q8N201 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.409423828125 2 639.82631 1277.63807 36131.2841737945 1.8245 0.0011674 179080 114.58 179080 114.58 754.408078341159 78.323 1.088 78.323 77.661 78.749 0 117 37 4 0.927012845756393 0.00199250701630372 0.0674100629342237 1.2985E-22 2 18292 258.56 210.75 4 62373000 24542 22648 23324 21241 24805 25440 27147 24700 22835 26180 23219 21387 23579 21963 25114 25353 27403 25594 22714 25224 2 2 2 2 2 2 2 2 2 2 2946 1458 2601 2747 3282;3283 3283 2701;4673 LSTFRESFK 9 Phospho (STY) _LSTFRES(ph)FK_ LS(0.006)T(0.005)FRES(0.989)FK LS(-22.14)T(-22.72)FRES(22.14)FK 0 0 1 1 P23497 P23497 P23497 SP100 Nuclear autoantigen Sp-100 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.967529296875 3 398.856673 1193.54819 42377.2202241276 1.6257 0.0006484 383030 152.78 383040 152.78 551.632475053333 70.872 0.71808 70.872 70.538 71.256 0 60 24 3 0.991051910205936 0.00404941957740915 0.0288869386517728 0.016985 1 16617 59.57 32.6 3 38332000 15664 12944 16863 12217 18093 17430 20295 16737 13601 3003.4 14827 12224 16930 12672 18313 17236 20369 16906 13704 3215.4 1 1 1 1 1 1 1 1 1 1 2947 466 2602 2748 3284 3284 761 LSTFRESFKK 10 Phospho (STY) _LSTFRES(ph)FKK_ LS(0.003)T(0.002)FRES(0.995)FKK LS(-25.37)T(-26.26)FRES(25.37)FKK 0 0 1 2 P23497 P23497 P23497 SP100 Nuclear autoantigen Sp-100 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.290557861328 4 331.418065 1321.64315 44478.5706142874 1.3203 0.00043756 518600 171.87 518600 171.87 503.290111134751 66.387 0.49498 66.387 66.14 66.635 0 50 16 4 0.930929010300008 0.00240603125147103 0.0497908778353118 0.0081681 1 15594 75.589 51.738 3 12241000 8143.6 7342.2 8448.7 6457 10093 7819.6 9984.4 8187.3 6910.4 861.18 7707.1 6930.9 8509.7 6705.8 10141 7783.4 10084 8224.1 6948.9 1000.4 1 1 1 1 1 1 1 1 1 1 2948 466 2603 2749 3285 3285 761 LSTPQKK 7 Phospho (STY) _LS(ph)TPQKK_ LS(0.898)T(0.102)PQKK LS(9.46)T(-9.46)PQKK 0 0 1 1 Q96C90 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.987121582031 3 294.487921 880.441933 43469.0224931889 1.4144 0.00041653 778170 229.16 778180 229.16 523.651050959517 43.922 0.79283 43.922 43.522 44.315 0 93 26 5 0.982452333037559 0.00305586606759013 0.013285471736926 0.017842 1 10016 63.216 22.492 2 148570000 19636 25467 22000 23565 15592 22635 16344 22260 26675 2467.8 18589 24047 21940 24297 16221 22730 16884 22417 25882 2838.9 1 1 1 1 1 1 1 1 1 1 2949 1662 2604 2750 3286 3286 3059 LSTSPPPPAIAVPLLEMGFSLR 22 Oxidation (M),Phospho (STY) _LS(ph)TSPPPPAIAVPLLEM(ox)GFSLR_ LSTSPPPPAIAVPLLEM(1)GFSLR LS(0.407)T(0.328)S(0.265)PPPPAIAVPLLEMGFSLR LSTSPPPPAIAVPLLEM(105.44)GFSLR LS(0.94)T(-0.94)S(-1.86)PPPPAIAVPLLEMGFS(-105.22)LR 0 1 1 0 Q15751 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.801391601563 3 797.079417 2388.21642 34041.342007602 1.2085 0.00096327 95834 76.387 95835 76.388 873.79937883375 102.41 0.1776 102.41 102.3 102.48 0 12 5 3 0.951983130610204 0.00391725886129869 0.0324640605136778 6.448E-05 1 24129 105.44 85.067 4 19524000 3878 4276.5 3739.6 3468.6 5103.5 3572.6 4570.9 4603.5 4916.4 40193 3669.1 4035.2 3789.2 3612.5 5091.3 3664.9 4687.8 5788.8 4836.3 37953 1 1 1 1 1 1 1 1 1 1 2950 1092 2605 2751 3287 3287 145 1894 LSTSPPPPAIAVPLLEMGFSLR 22 Phospho (STY) _LS(ph)TSPPPPAIAVPLLEMGFSLR_ LS(0.41)T(0.328)S(0.262)PPPPAIAVPLLEMGFSLR LS(0.98)T(-0.98)S(-1.95)PPPPAIAVPLLEMGFS(-156.16)LR 0 0 1 0 Q15751 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 868.469482421875 3 791.747778 2372.22151 34236.4656966262 1.6502 0.0013065 96479 76.387 96481 76.388 868.46896391993 103.76 0.33896 103.76 103.63 103.97 0 29 11 5 0.993838131327905 0.00886777306142338 0.186557523130116 3.8857E-08 1 24454 157.68 140.34 4 23354000 1229.2 2083 1878.9 2064.9 1795.4 1725.4 1772.1 2458 2248.8 15824 1165.5 1967.6 1853.5 2115.9 1827 1783.6 1818 2914 2198.7 14957 1 1 1 1 1 1 1 1 1 1 2951 1092 2605 2752 3288 3288 1894 LSTSPVR 7 Phospho (STY) _LSTS(ph)PVR_ LS(0.011)T(0.14)S(0.85)PVR LS(-19.07)T(-7.84)S(7.84)PVR 0 0 1 0 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 534.787048339844 2 420.204768 838.394983 43401.2667986329 1.1945 0.00050194 272680 114.58 272680 114.58 534.786199628814 44.151 0.89452 44.151 43.815 44.71 7.1054E-15 62 30 3 0.981821026442449 0.00437012080737301 0.151358413287054 0.0011234 1 10109 121.53 58.654 3 76744000 56626 9665.9 54104 9131.6 9024.5 54991 11724 25087 8050.1 1967.7 53573 9128 54078 10146 11854 52702 11704 26382 8098.9 2433.5 1 1 1 1 1 1 1 1 1 1 2952 2248 2606 2753 3289 3289 4153 LSVDRYSGR 9 Phospho (STY) _LSVDRYS(ph)GR_ LS(0.007)VDRY(0.422)S(0.571)GR LS(-19.37)VDRY(-1.31)S(1.31)GR 0 0 1 1 REV__Q9UHK6 REV__Q9UHK6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.342468261719 2 566.76097 1131.50739 36856.12317985 1.9311 0.0010945 202170 114.58 202170 114.58 681.340870113091 38.577 0.87207 38.577 38.297 39.169 7.1054E-15 97 29 5 0.962555477830548 0.00426274846472275 0.121600630626139 0.038228 1 8723 53.166 19.089 3 146750000 62225 34025 61307 31577 82342 59021 86714 62922 29271 3073.8 58878 32128 62052 33012 82327 57990 86484 63056 31318 4350.6 1 1 1 1 1 1 1 1 1 1 + 2953 2351 2607 2754 3290 3290 4308 LSVPTSDEEDEVPAPKPR 18 Phospho (STY) _LSVPTS(ph)DEEDEVPAPKPR_ LSVPT(0.026)S(0.974)DEEDEVPAPKPR LS(-55.94)VPT(-15.69)S(15.69)DEEDEVPAPKPR 0 0 1 1 Q8NE71 Q8NE71 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.073364257813 4 512.241134 2044.93543 39007.9963513418 0.93048 0.00047663 223690 114.58 223690 114.58 627.073181614628 65.905 0.82989 65.905 65.544 66.374 0 59 27 3 0.74451898146237 0.00331900933914229 0.036812857982861 4.2691E-05 1 15455 120.32 104.13 3 22558000 5323.8 6309.3 5169 5673.1 5372.4 4914.6 5381.2 4604.9 7928.3 1994.9 5037.1 5956.5 5216.2 5851.6 5442.4 4959.9 5546.9 4691.1 7714.8 1985 1 1 1 1 1 1 1 1 1 1 2954 1514 2608 2755 3291 3291 2780 LSVPTSDEEDEVPAPKPR 18 Phospho (STY) _LSVPTS(ph)DEEDEVPAPKPR_ LS(0.003)VPT(0.228)S(0.769)DEEDEVPAPKPR LS(-24.75)VPT(-5.28)S(5.28)DEEDEVPAPKPR 0 0 1 1 Q8NE71 Q8NE71 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.432495117188 3 682.65242 2044.93543 33600.9462652811 1.4774 0.0010086 223800 152.78 223800 152.78 835.762081634372 65.859 2.187 65.859 65.372 67.559 0 301 74 6 0.752131747600763 0.00692272429578011 0.203628436561638 0.00023134 1 15678 100.9 80.252 3 200430000 23668 33076 27916 34503 25477 26516 25508 30441 36476 17184 22412 31254 27835 35212 26009 27016 26263 30900 35526 16885 1 1 1 1 1 1 1 1 1 1 2955 1514 2608 2755 3292 3292 2780 LSVPYVPQVTDEDRLSR 17 Phospho (STY) _LSVPYVPQVTDEDRLS(ph)R_ LSVPYVPQVTDEDRLS(1)R LS(-152.28)VPY(-150.31)VPQVT(-63.01)DEDRLS(63.01)R 0 0 1 1 Q14156 Q14156 Q14156 EFR3A Protein EFR3 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.0615234375 3 685.336655 2052.98814 35978.5188969194 1.6468 0.0011286 111460 76.388 111460 76.389 762.058390829302 82.741 0.98339 82.741 82.458 83.441 0 105 33 4 0.989776519467838 0.00326961450741993 0.0378537714310537 1.8255E-07 1 19337 159.73 124.82 4 23191000 6794.1 5070 6210.2 5575.6 5476.5 6988.9 6101.8 7078.6 5057.3 21158 6426.8 4792.3 6279.1 5716.7 5608.7 6983.2 6152.5 7734.4 5034.3 20086 1 1 1 1 1 1 1 1 1 1 2956 992 2609 2756 3293 3293 1677 LSVQSNPSPQLR 12 Phospho (STY) _LSVQSNPS(ph)PQLR_ LSVQS(0.008)NPS(0.992)PQLR LS(-47.07)VQS(-20.74)NPS(20.74)PQLR 0 0 1 0 O75152 O75152 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.431030273438 2 703.345398 1404.67624 33248.7843894794 1.8755 0.0013191 162910 114.58 162910 114.58 817.927561084071 56.38 0.47802 56.38 56.186 56.664 0 34 15 3 0.82388881574749 0.00103802149229389 0.0333574163329681 0.02043 1 13176 64.534 43.632 3 18157000 12165 17331 14268 15256 14109 13493 15700 16002 18977 14109 11519 16360 14247 15762 14353 13661 15995 16379 18585 13656 1 1 1 1 1 1 1 1 1 1 2957 171 2610 2757 3294 3294 296 LSYSTSQEFSSR 12 Phospho (STY) _LSYSTS(ph)QEFSSR_ LSYS(0.002)T(0.349)S(0.649)QEFSSR LS(-59.47)Y(-101.32)S(-25.49)T(-2.7)S(2.7)QEFS(-61.75)S(-81.47)R 0 0 1 0 Q5VUB5 Q5VUB5 Q5VUB5 FAM171A1 Protein FAM171A1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 850.892028808594 2 736.308678 1470.6028 33851.991074616 1.8273 0.0013455 155620 114.58 155620 114.58 850.890598396786 61.906 0.41174 61.906 61.741 62.152 0 29 13 3 0.736695649237792 0.000826251344778434 0.0152376061748726 4.5444E-07 1 14532 150.78 124.8 7 13128000 11933 15222 12185 15903 21326 13371 22902 18208 15919 32948 11293 14384 12370 16246 21118 13638 23045 19069 16004 31446 1 1 1 1 1 1 1 1 1 1 2958 1205 2611 2758 3295 3295 2121 LTARGFEKMPR 11 Phospho (STY) _LT(ph)ARGFEKMPR_ LT(1)ARGFEKMPR LT(56.95)ARGFEKMPR 0 0 1 2 Q14679 Q14679 Q14679 TTLL4 Tubulin polyglutamylase TTLL4 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.340942382813 3 462.563495 1384.66866 NaN NaN NaN NaN NaN NaN NaN NaN 74.128 1 74.128 73.628 74.628 0 NaN NaN NaN 0.045569 1 17409 56.951 26.893 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2959 1018 2612 2759 3296 3296 4561 LTCMQSCSAPVNAGPSSLASEPPGSPSTPR 30 Phospho (STY) _LTCMQSCSAPVNAGPSSLASEPPGS(ph)PSTPR_ LTCMQSCSAPVNAGPSSLASEPPGS(0.731)PS(0.209)T(0.06)PR LT(-131.79)CMQS(-125.85)CS(-119.07)APVNAGPS(-56.21)S(-63.06)LAS(-48.97)EPPGS(5.44)PS(-5.44)T(-10.84)PR 0 0 1 0 Q96HA7 Q96HA7 Q96HA7 TONSL Tonsoku-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1118.51245117188 3 1041.79089 3122.35083 30084.7945690902 0.57077 0.00059462 73323 76.388 73324 76.388 1118.51288922656 70.489 0.55246 70.489 70.215 70.768 0 40 18 3 0.860743509702065 0.000433923050296956 0.00191019860951879 1.0232E-07 1 16546 154.32 135.44 9 20592000 2174.7 1973.4 1980.5 1710.3 2233 2651.2 2022.3 2052.1 2069.2 16372 2057.1 1862.7 2008.1 1787.2 2248.2 2638.8 2069.9 2574.9 2039.7 15463 1 1 1 1 1 1 1 1 1 1 2960 1689 2613 2760 3297 3297 3105 LTEGCSFR 8 Phospho (STY) _LTEGCS(ph)FR_ LTEGCS(1)FR LT(-48.13)EGCS(48.13)FR 0 0 1 0 P42677;Q71UM5 P42677 P42677 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 639.792297363281 2 525.209724 1048.4049 39099.2059535887 1.3392 0.00070337 218160 114.58 218160 114.58 639.791310039762 55.698 0.82414 55.698 55.393 56.217 0 75 27 4 0.973159167074321 0.00381151847803858 0.0745523377058982 0.015444 1 12981 76.143 54.057 2 80057000 48921 26571 45833 31225 18646 46971 19866 30920 31551 5773.3 46281 25128 45998 32030 20556 46188 20484 31811 30636 6151.9 1 1 1 1 1 1 1 1 1 1 2961 588 2614 2761 3298 3298 953 LTEGCSFRR 9 Phospho (STY) _LTEGCS(ph)FRR_ LTEGCS(1)FRR LT(-48.47)EGCS(48.47)FRR 0 0 1 1 P42677;Q71UM5 P42677 P42677 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.844970703125 2 603.26028 1204.50601 NaN NaN NaN NaN NaN NaN NaN NaN 44.777 1 44.777 44.277 45.277 0 NaN NaN NaN 0.028801 1 10293 71.085 48.168 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2962 588 2615 2762 3299 3299 953 LTEPQHGLGSQR 12 Phospho (STY) _LTEPQHGLGS(ph)QR_ LTEPQHGLGS(1)QR LT(-60.18)EPQHGLGS(60.18)QR 0 0 1 0 Q13586 Q13586 Q13586 STIM1 Stromal interaction molecule 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 544.943786621094 3 468.220674 1401.64019 43028.6922623252 1.0878 0.00050935 163150 76.389 163150 76.39 544.608965382987 42.854 1.0172 42.854 42.337 43.354 0 79 34 5 0.969048001956237 0.00267817874177718 0.0195946347414093 0.010623 1 9795 69.416 49.426 2 26538000 13206 16565 12122 19915 19608 15541 22300 18267 18089 3178.8 12492 15667 12365 20173 19490 15812 22454 18313 18027 3416 1 1 1 1 1 1 1 1 1 1 2963 969 2616 2763 3300 3300 1644 LTFDSSFSPNTGK 13 Phospho (STY) _LTFDSSFS(ph)PNTGK_ LTFDSSFS(1)PNTGK LT(-85.19)FDS(-60.93)S(-46.33)FS(46.33)PNT(-68.43)GK 0 0 1 0 P21796 P21796 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.992797851563 3 494.216707 1479.62829 39573.4792672164 1.6102 0.00079581 309130 152.77 309130 152.78 646.991855837834 84.257 0.62266 84.257 83.956 84.579 0 89 21 6 0.842226420773671 0.00230821881354905 0.0372943841492497 2.0088E-07 1 19667 164.53 132.7 5 21420000 7561 9457.2 6792.9 8785.2 7998.2 6627.3 7196.4 7838.1 9219.9 7562.9 7151.8 8930 6897.4 9026.7 8036 6768.6 7419.2 8043.1 9011.5 7302.7 1 1 1 1 1 1 1 1 1 1 2964 453 2617 2764 3301 3301 740 LTFDSSFSPNTGKK 14 Phospho (STY) _LTFDSSFS(ph)PNTGKK_ LTFDSS(0.001)FS(0.998)PNT(0.001)GKK LT(-70.97)FDS(-35.47)S(-28.87)FS(28.87)PNT(-31.04)GKK 0 0 1 1 P21796 P21796 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.41455078125 3 536.915028 1607.72325 35823.6237666665 2.4297 0.0013045 426810 229.16 426820 229.16 766.078008403565 77.545 0.84018 77.545 77.168 78.008 -1.4211E-14 109 28 6 0.906687914923485 0.00663010149702777 0.0763794486456084 0.00011673 1 18141 118.72 98.069 5 130110000 16686 20942 17915 21990 20708 15400 21052 20025 23392 15470 15794 19789 18004 22408 20857 15817 21476 20374 22982 15030 1 1 1 1 1 1 1 1 1 1 2965 453 2618 2765 3302 3302 740 LTFDTTFSPNTGK 13 Phospho (STY) _LTFDTTFS(ph)PNTGK_ LTFDTTFS(1)PNTGK LT(-86.32)FDT(-65.94)T(-50.16)FS(50.16)PNT(-87.71)GK 0 0 1 0 P45880 P45880 P45880 VDAC2 Voltage-dependent anion-selective channel protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.335571289063 3 503.560473 1507.65959 37603.8917182972 1.2114 0.00061 303390 152.78 303390 152.78 656.669872308425 88.119 0.63193 88.119 87.848 88.479 0 56 21 3 0.959377803159096 0.00468555617202797 0.114795211533634 8.6471E-08 1 20531 171.08 89.011 5 33120000 7094.9 9592.5 5825 9455.6 4458.2 6054.5 5224.3 7293.9 9656.8 6920 6708.9 9060.9 5923.2 9662.4 4619.9 6249.1 5402.5 7476.8 9340.4 6684.8 1 1 1 1 1 1 1 1 1 1 2966 602 2619 2766 3303 3303 977 LTFDTTFSPNTGKK 14 Phospho (STY) _LTFDTTFS(ph)PNTGKK_ LTFDTT(0.008)FS(0.992)PNTGKK LT(-105.73)FDT(-37)T(-20.83)FS(20.83)PNT(-48.36)GKK 0 0 1 1 P45880 P45880 P45880 VDAC2 Voltage-dependent anion-selective channel protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.75732421875 3 546.258794 1635.75455 35858.2566708011 1.7173 0.00093808 419510 229.16 419520 229.16 775.756306990634 81.057 0.69422 81.057 80.723 81.418 0 100 23 6 0.990871411010734 0.02235726460754 0.284442777290053 7.5321E-16 1 18961 227.46 194.1 5 119650000 66807 113390 61164 119820 63449 68198 62287 84101 132660 69860 63195 107150 61939 121810 64303 70993 65386 85848 127910 67728 1 1 1 1 1 1 1 1 1 1 2967 602 2620 2767 3304 3304 977 LTFEVELVDID 11 Unmodified _LTFEVELVDID_ 0 0 0 0 Q00688 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.91796875 2 646.834651 1291.65475 35350.628321584 1.3695 0.00088585 177140 114.58 177140 114.58 761.415411331147 102.34 0.17551 102.34 102.25 102.42 0 12 5 3 0.908091877644953 0.00249574365054621 0.0575438267251496 0.052204 1 24113 69.954 52.045 1 29956000 4239.4 5762 4494.7 5806.2 4874 4518.2 5140.9 5616.3 5711.7 23427 4012.5 5443.4 4516.3 5938.2 4928.1 4644.2 5235.8 6296.9 5611.6 22190 1 1 1 1 1 1 1 1 1 1 2968 827 2621 2768 3305 3305 LTGSLGCSIDR 11 Phospho (STY) _LTGS(ph)LGCSIDR_ LT(0.016)GS(0.981)LGCS(0.003)IDR LT(-17.94)GS(17.94)LGCS(-25.47)IDR 0 0 1 0 Q99698 Q99698 Q99698 LYST Lysosomal-trafficking regulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.862365722656 2 629.778502 1257.54245 36223.0302513787 1.6513 0.00104 181940 114.58 181940 114.58 744.359922112511 66.058 0.59888 66.058 65.717 66.316 0 62 19 5 0.863636500620657 0.00161019790169222 0.0632648687777259 0.01541 1 15484 72.62 53.522 3 77101000 30247 9805.1 30503 9601 10549 29512 10001 16786 8866.7 8734.9 28622 9261.4 30455 10190 11874 28549 10176 17594 8796.9 8613.5 1 1 1 1 1 1 1 1 1 1 2969 1783 2622 2769 3306 3306 3286 LTGSTSSLNK 10 Phospho (STY) _LTGSTSS(ph)LNK_ LTGS(0.001)T(0.094)S(0.209)S(0.696)LNK LT(-73.87)GS(-30.41)T(-8.69)S(-5.22)S(5.22)LNK 0 0 1 0 Q9NV70 Q9NV70 Q9NV70 EXOC1 Exocyst complex component 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.418579101563 2 544.255186 1086.49582 35839.8270630588 1.7356 0.00094463 421060 229.16 421060 229.16 773.418128404274 55.046 0.60875 55.046 54.755 55.364 0 58 20 4 0.903465630273672 0.00300989170419527 0.0231185141228607 6.6358E-10 1 12849 202 122.51 5 51967000 63791 44763 68203 45380 62098 64250 65467 58611 50077 9615.1 60379 42290 68355 46860 63411 63506 66056 59299 50064 10410 1 1 1 1 1 1 1 1 1 1 2970 2044 2623 2770 3307 3307 3706;4785 LTGSTSSLNK 10 Phospho (STY) _LT(ph)GSTSSLNK_ LT(0.477)GS(0.351)T(0.17)S(0.002)SLNK LT(1.33)GS(-1.33)T(-4.47)S(-23.12)S(-32.92)LNK 0 0 1 0 Q9NV70 Q9NV70 Q9NV70 EXOC1 Exocyst complex component 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 515.9482421875 3 363.17255 1086.49582 43922.4233726923 0.74878 0.00027193 420670 152.78 420670 152.78 515.947950312936 57.797 0.45724 57.797 57.506 57.963 7.1054E-15 34 15 3 0.98658541312634 0.00175212640527141 0.0497344747287262 0.013083 1 13511 74.962 46.219 5 10183000 9195.8 9584.2 7990.7 9830.2 9847.5 9234.9 9528 9185.8 11701 2294 8697.1 9055.3 8137.6 10069 9881.1 9286.9 9773.6 9285.1 11453 2372.7 1 1 1 1 1 1 1 1 1 1 2971 2044 2623 2770 3308 3308 3706;4785 LTLSSACDGLLQPPVDTQPGVTVPAVSFPAPSPVEESALR 40 Phospho (STY) _LTLSSACDGLLQPPVDTQPGVTVPAVSFPAPS(ph)PVEESALR_ LTLSSACDGLLQPPVDT(0.323)QPGVT(0.032)VPAVS(0.011)FPAPS(0.583)PVEES(0.05)ALR LT(-56)LS(-52.67)S(-48.9)ACDGLLQPPVDT(-2.56)QPGVT(-12.57)VPAVS(-17.35)FPAPS(2.56)PVEES(-10.63)ALR 0 0 1 0 O43379 O43379 O43379 WDR62 WD repeat-containing protein 62 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1104.3125 4 1046.52217 4182.05959 30505.9707829381 1.0279 0.0010757 54744 57.29 54745 57.292 1104.31402451331 101.19 0.3474 101.19 100.95 101.3 0 21 11 4 0.873660980367013 0.00394284222159851 0.0942827000859447 0.0032061 1 23756 76.356 62.794 8 23468000 4548.1 3963.4 3486.9 5097.4 3772 2444.1 3178.2 3862.5 4270.5 58208 4299.7 3750.5 3574.5 5122 3803.7 2695.7 3293.6 5573.3 4167.3 54899 1 1 1 1 1 1 1 1 1 1 2972 108 2624 2771 3309 3309 183 LTMQVSSLQR 10 Phospho (STY) _LTMQVSS(ph)LQR_ LTMQVS(0.173)S(0.827)LQR LT(-61.15)MQVS(-6.79)S(6.79)LQR 0 0 1 0 P35659 P35659 P35659 DEK Protein DEK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.383361816406 2 621.799238 1241.58392 37281.0482927936 2.7915 0.0017358 184270 114.58 184280 114.58 736.382357546446 68.315 0.40941 68.315 68.035 68.445 0 37 13 4 0.874824563343185 0.00201972791774061 0.0702409827087082 0.00031733 1 16042 112.44 71.71 3 16670000 21091 13600 21546 11513 13553 21468 12246 16479 15268 7278.6 19960 12836 21569 12109 14210 21025 12611 16942 14937 7235 1 1 1 1 1 1 1 1 1 1 2973 552 2625 2772 3310 3310 900 LTPEEEEILNK 11 Unmodified _LTPEEEEILNK_ 0 0 0 0 P62241 P62241 P62241 RPS8 40S ribosomal protein S8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.006652832031 3 438.897764 1313.67146 43359.3602071359 1.3966 0.00061297 348090 152.78 348090 152.78 591.673171737911 80.17 0.38287 80.17 79.93 80.313 0 27 12 3 0.895910947631056 0.00115789679534808 0.00857176530015567 0.00012173 1 18773 115.78 90.345 1 8083700 5154.6 5747.4 4748.7 5263.2 4925.8 5913.2 5614.6 5217 6317.9 6417.8 4876 5426.6 4808.5 5444 4998.6 5901.4 5701.4 5453.4 6204 6163.8 1 1 1 1 1 1 1 1 1 1 2974 757 2626 2773 3311 3311 LTPLILKPFGNSISR 15 Phospho (STY) _LTPLILKPFGNS(ph)ISR_ LTPLILKPFGNS(0.93)IS(0.07)R LT(-147.33)PLILKPFGNS(11.25)IS(-11.25)R 0 0 1 1 Q14739 Q14739 Q14739 LBR Lamin-B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.098266601563 3 579.321729 1734.94336 36666.2504762726 2.3282 0.0013488 263710 152.78 263720 152.78 732.431125103887 100.18 0.28173 100.18 100.09 100.37 0 30 9 5 0.985102338040963 0.0229484715757216 0.509965082970945 6.8739E-16 1 23373 226.11 204.34 3 212510000 56709 98118 59695 93626 30507 59277 32781 63270 99648 20377 53672 92663 59585 95854 32778 61038 35090 63923 95487 20652 1 1 1 1 1 1 1 1 1 1 2975 1026 2627 2774 3312 3312 1755 LTPLPEDNSMNVDQDGDPSDR 21 Unmodified _LTPLPEDNSMNVDQDGDPSDR_ 0 0 0 0 P78527 P78527 P78527 PRKDC DNA-dependent protein kinase catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1272.59057617188 2 1158.00824 2314.00193 27947.8824076844 1.5174 0.0017571 98947 114.58 98948 114.58 1273.09036915174 69.017 0.4126 69.017 68.794 69.207 0 43 13 4 0.97611057658188 0.00058879914486217 0.0106110910696346 4.831E-53 1 16194 364.82 344.36 1 20726000 8410.5 7595 7797.2 6165.4 5903.6 8764.1 6171.5 7633 8070.5 5649.4 7956.2 7166.6 7863.9 6459.4 6108.4 8665.1 6321.2 7870.5 7882.6 5496.2 1 1 1 1 1 1 1 1 1 1 2976 803 2628 2775 3313 3313 LTPPSPVR 8 Phospho (STY) _LTPPS(ph)PVR_ LT(0.256)PPS(0.744)PVR LT(-4.63)PPS(4.63)PVR 0 0 1 0 Q8TAP8 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 588.324035644531 2 473.741518 945.468482 41716.3735521171 1.2812 0.00060694 241870 114.58 241870 114.58 588.323823499739 56.018 1.0351 56.018 55.449 56.484 0 76 34 3 0.938443472324643 0.00141237211278915 0.0225765736788732 0.020918 1 13063 66.19 36.814 2 31643000 18991 28142 19764 28109 16313 19007 18759 21103 30597 6693.8 17973 26585 19820 28717 16804 19497 19302 21288 29688 6791.4 1 1 1 1 1 1 1 1 1 1 2977 1532 2629 2776 3314 3314 2816 LTPSPDIIVLSDNEASSPR 19 Phospho (STY) _LTPSPDIIVLSDNEASS(ph)PR_ LTPSPDIIVLSDNEAS(0.045)S(0.955)PR LT(-198.84)PS(-193.37)PDIIVLS(-115.95)DNEAS(-13.29)S(13.29)PR 0 0 1 0 Q8WXI9 Q8WXI9 Q8WXI9 GATAD2B Transcriptional repressor p66-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.396301269531 3 697.671703 2089.99328 35826.6706883791 1.651 0.0011518 109490 76.388 109490 76.389 774.393945836658 91.885 0.77039 91.885 91.598 92.369 0 96 26 5 0.973825113730511 0.00263010481704232 0.0443432424505299 4.9685E-16 1 21379 220.13 200.3 5 26899000 3741.2 3045.6 4007.5 3365.2 3814.5 4032.6 4042.2 4358.5 4262.8 16790 3541.1 2878.9 4018 3446.5 3885.8 4048 4109.8 4865.2 4196.8 15910 1 1 1 1 1 1 1 1 1 1 2978 1582 2630 2777 3315 3315 2909 LTPVRPAAASPIVSGAR 17 Phospho (STY) _LTPVRPAAAS(ph)PIVSGAR_ LTPVRPAAAS(1)PIVSGAR LT(-64.87)PVRPAAAS(57.36)PIVS(-57.36)GAR 0 0 1 1 Q9Y2K7 Q9Y2K7 Q9Y2K7 KDM2A Lysine-specific demethylase 2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.036315917969 3 581.648616 1741.92402 37483.2511625823 1.5312 0.00089061 131330 76.387 131330 76.388 658.035848687697 60.809 0.43869 60.809 60.601 61.039 0 45 14 4 0.866078889664244 0.00544946971369921 0.0615426617625387 3.2782E-07 1 14256 146.75 117.85 3 45742000 14749 21939 13767 21876 17690 16760 18074 17562 27352 4373.8 13953 20725 13968 22383 17735 17046 18634 17716 26594 4524.9 1 1 1 1 1 1 1 1 1 1 2979 2252 2631 2778 3316 3316 4159 LTPVSLSNSPIK 12 Phospho (STY) _LTPVSLSNS(ph)PIK_ LTPVSLS(0.001)NS(0.999)PIK LT(-85.87)PVS(-72.97)LS(-28.83)NS(28.83)PIK 0 0 1 0 P46100 P46100 P46100 ATRX Transcriptional regulator ATRX MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.677368164063 3 445.902171 1334.68468 40280.3494863176 2.0599 0.00091851 342620 152.77 342620 152.78 598.67739493622 81.648 0.46539 81.648 81.418 81.883 0 48 15 4 0.905741020227155 0.00154538989517224 0.0191481423644873 5.4006E-05 1 19087 125.5 58.364 4 16068000 4514.3 6058.4 4510.1 5921.1 6244.8 5151.6 6374.8 6179.4 6789.9 4215.3 4271.7 5722.4 4563.2 6075.6 6237 5218.8 6494.1 6285.5 6682 4112.3 1 1 1 1 1 1 1 1 1 1 2980 607 2632 2779 3317 3317 1002 LTPVSPESSSTEEK 14 Phospho (STY) _LTPVS(ph)PESSSTEEK_ LT(0.214)PVS(0.786)PESSSTEEK LT(-5.64)PVS(5.64)PES(-42.83)S(-65.44)S(-79.14)T(-95.55)EEK 0 0 1 0 Q13501 Q13501 Q13501 SQSTM1 Sequestosome-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.010314941406 3 524.234314 1569.68111 38319.613464271 1.9284 0.0010109 291430 152.78 291430 152.78 677.009607164598 59.354 0.71715 59.354 59.047 59.764 -7.1054E-15 97 24 5 0.876773054915683 0.00228784023852967 0.0481873307011391 4.4169E-07 1 13870 157.37 121.61 6 90297000 13832 13624 13833 14399 12821 13313 11720 13614 16447 6696.2 13088 12875 13914 14720 13059 13410 12112 13846 16028 6620.3 1 1 1 1 1 1 1 1 1 1 2981 960 2633 2780 3318 3318 1617;4541 LTQTSSTEQLNVLETETEVLNK 22 Phospho (STY) _LTQTSS(ph)TEQLNVLETETEVLNK_ LT(0.003)QT(0.037)S(0.124)S(0.644)T(0.192)EQLNVLETETEVLNK LT(-23.47)QT(-12.36)S(-7.17)S(5.27)T(-5.27)EQLNVLET(-89.37)ET(-95.05)EVLNK 0 0 1 0 Q5JSH3 Q5JSH3 Q5JSH3 WDR44 WD repeat-containing protein 44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.144653320313 4 640.06247 2556.22077 35687.2903480003 1.7897 0.0011455 179020 114.58 179020 114.58 754.89499654142 100.04 0.13825 100.04 99.947 100.09 0 14 4 5 0.946970505255907 0.000438192252574525 0.0232952457770623 2.433E-05 1 23331 124.17 101.73 7 60606000 6983.6 8196.9 7009 7929.8 7151 5958.9 8376.8 8990.1 7783.9 40807 6608.4 7741.8 7060.3 8126.7 7265.2 6175.8 8451.8 10130 7705.5 38633 1 1 1 1 1 1 1 1 1 1 2982 1167 2634 2781 3319 3319 2017 LTQYHGGSLPNVSQLR 16 Phospho (STY) _LTQYHGGS(ph)LPNVSQLR_ LTQYHGGS(1)LPNVSQLR LT(-42.23)QY(-74.85)HGGS(40.62)LPNVS(-40.62)QLR 0 0 1 0 Q6UUV7 Q6UUV7 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.69140625 3 617.303397 1848.88836 37473.9725499078 1.6922 0.0010446 123750 76.389 123750 76.39 694.026660113813 72.398 0.43829 72.398 72.135 72.573 0 41 14 4 0.988878258544327 0.000996483136743492 0.00656317819740971 3.9044E-07 1 16971 152.07 115.44 4 16099000 7514 5237.5 7329.2 5459 6315.7 8044.4 5550.5 6003.2 4546.2 6671 7109.5 4948.9 7376.8 5633.2 6457.3 7934.9 5659.2 6301.8 4528.4 6420.5 1 1 1 1 1 1 1 1 1 1 2983 1282 2635 2782 3320 3320 2282 LTSPGALLFQ 10 Phospho (STY) _LTS(ph)PGALLFQ_ LT(0.087)S(0.913)PGALLFQ LT(-10.19)S(10.19)PGALLFQ 0 0 1 0 O60566 O60566 O60566 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.3623046875 2 563.78084 1125.54713 38424.2627583539 1.378 0.0007769 203240 114.58 203240 114.58 678.362116699521 102.72 0.17521 102.72 102.63 102.8 -1.4211E-14 15 5 4 0.912478685119537 0.00299928870953998 0.0800659986571009 1.4837E-09 1 24211 187.97 173.56 2 22390000 4004.2 5809.1 3788.1 6154.9 3610.6 3453.8 3926.3 5139 6388.1 23080 3788.1 5489.6 3825.2 6255.2 3681.3 3647 4048.9 5784.9 6198.7 21852 1 1 1 1 1 1 1 1 1 1 2984 151 2636 2783 3321 3321 257 LTTTGQVTSPVK 12 Phospho (STY) _LTTTGQVTS(ph)PVK_ LTTTGQVTS(1)PVK LT(-89.3)T(-84.69)T(-79.01)GQVT(-38.5)S(38.5)PVK 0 0 1 0 P49916 P49916 P49916 LIG3 DNA ligase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.001220703125 3 437.890042 1310.6483 40682.8940966735 1.8868 0.00082619 348890 152.78 348890 152.78 590.665369990493 59.355 0.74505 59.355 59.047 59.792 -7.1054E-15 90 24 6 0.978724347104142 0.00660312139427392 0.136612929892083 7.7863E-05 1 13875 119.63 94.696 5 192440000 13093 10385 14534 11175 10786 14799 14992 11603 11839 3392.6 12395 9814.4 14514 11484 11223 14638 14972 11864 11816 3463.1 1 1 1 1 1 1 1 1 1 1 2985 660 2637 2784 3322 3322 1116 LTTTGQVTSPVKGASFVTSTNPR 23 Phospho (STY) _LTTTGQVTS(ph)PVKGASFVTSTNPR_ LTTT(0.001)GQVT(0.213)S(0.786)PVKGASFVTSTNPR LT(-70.12)T(-49.84)T(-28.05)GQVT(-5.68)S(5.68)PVKGAS(-59.91)FVT(-71.37)S(-70.37)T(-69.35)NPR 0 0 1 1 P49916 P49916 P49916 LIG3 DNA ligase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 963.519470214844 3 810.407249 2428.19992 32234.4299077599 1.7764 0.0014396 188520 152.77 188520 152.78 963.516730670846 70.82 0.4642 70.82 70.538 71.002 0 63 15 6 0.897216732895381 0.00212011060975285 0.00875263556111352 5.0887E-06 1 16647 136.14 105.38 9 109580000 27382 27450 29475 24304 51320 32902 52516 36753 28170 25702 25918 25913 29829 25285 50783 32692 52732 37491 28828 25052 1 1 1 1 1 1 1 1 1 1 2986 660 2638 2785 3323 3323 1116 LTVADALEPVQFEDGQK 17 Unmodified _LTVADALEPVQFEDGQK_ 0 0 0 0 P10644 P10644 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.762390136719 3 620.651029 1858.93126 37313.7060531504 2.1761 0.0013506 246150 152.78 246160 152.78 773.760567450758 95.834 0.40584 95.834 95.651 96.056 1.4211E-14 28 13 3 0.956166358817336 0.00124776202802297 0.0374849306299036 5.397E-05 1 22309 120.63 96.218 1 5246100 3634.6 3180.3 4206.8 2899.5 6997.9 4384.5 6862.7 6011.8 4473 14770 3441.4 3002.7 4237 3018.1 6932.5 4376.7 6926.7 6412.2 4514.9 14047 1 1 1 1 1 1 1 1 1 1 2987 355 2639 2786 3324 3324 LTVASPK 7 Phospho (STY) _LTVAS(ph)PK_ LT(0.001)VAS(0.999)PK LT(-30.44)VAS(30.44)PK 0 0 1 0 O75179 O75179 O75179 ANKRD17 Ankyrin repeat domain-containing protein 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.368469238281 2 398.204237 794.393921 39960.2270982849 2.1162 0.00084266 575490 229.16 575490 229.16 627.36727614549 57.193 0.77583 57.193 56.928 57.704 0 74 26 4 0.844138330821973 0.013326103531533 0.4331783461253 0.0017413 1 13371 111.61 59.743 2 129630000 117850 118190 121230 119290 35995 112120 46181 93021 124670 9048.9 111530 111660 120850 122300 41779 112480 48669 94320 119690 10674 1 1 1 1 1 1 1 1 1 1 2988 175 2640 2787 3325 3325 304 LTVENSPK 8 Phospho (STY) _LTVENS(ph)PK_ LT(0.011)VENS(0.989)PK LT(-19.48)VENS(19.48)PK 0 0 1 0 O43583 O43583 O43583 DENR Density-regulated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.392333984375 2 484.22844 966.442327 36548.5971644832 2.8137 0.0013625 473250 229.16 473260 229.16 713.391960621759 53.783 0.67467 53.783 53.503 54.178 7.1054E-15 51 22 4 0.841555407663658 0.0014410944738246 0.0355290808871201 0.015147 1 12517 76.682 35.018 2 29331000 28519 48848 31743 47713 28968 28025 30412 37847 47155 9128.1 26998 46139 31746 48744 29597 29110 31346 37858 45818 9471.1 1 1 1 1 1 1 1 1 1 1 2989 119 2641 2788 3326 3326 207 LTWHSCPEDEAQ 12 Phospho (STY) _LTWHS(ph)CPEDEAQ_ LTWHS(1)CPEDEAQ LT(-59.24)WHS(59.24)CPEDEAQ 0 0 1 0 Q13185 Q13185 Q13185 CBX3 Chromobox protein homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 891.375732421875 2 776.792338 1551.57012 32832.5409406912 1.7178 0.0013344 147510 114.58 147510 114.58 891.373966766508 61.919 1.8681 61.919 61.504 63.372 0 244 63 7 0.995987634598437 0.00420941068974071 0.114961510688876 3.0925E-23 2 14467 281.01 271.22 2 1015600000 16853 17685 17725 18784 61027 18106 69073 36152 17606 23581 15951 16713 18343 19209 59439 18449 68514 36274 19555 23041 2 2 2 2 2 2 2 2 2 2 2990 934 2642 2789 3327;3328 3327 1536 LVEDKPGSRR 10 Phospho (STY) _LVEDKPGS(ph)RR_ LVEDKPGS(1)RR LVEDKPGS(47.53)RR 0 0 1 2 Q08170 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 565.649780273438 3 412.874727 1235.60235 42904.8294294307 1.4894 0.00061493 370030 152.77 370030 152.77 565.648794672303 39.434 0.46138 39.434 39.226 39.688 7.1054E-15 28 15 3 0.981500342479011 0.000817786655024202 0.0130075060203318 0.053542 1 8968 47.532 19.67 1 9863700 10192 10523 11102 13724 12804 9654.1 13292 10152 10446 2898.3 9647.5 9958.9 11148 13830 12898 9870.1 13429 10252 10428 2964.1 1 1 1 1 1 1 1 1 1 1 2991 886 2643 2790 3329 3329 1442 LVEPHSPSPSSK 12 2 Phospho (STY) _LVEPHS(ph)PS(ph)PSSK_ LVEPHS(1)PS(0.923)PS(0.063)S(0.014)K LVEPHS(40.63)PS(11.66)PS(-11.66)S(-18.14)K 0 0 2 0 O15014 O15014 O15014 ZNF609 Zinc finger protein 609 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.648559570313 3 475.533469 1423.57858 38603.8754866096 1.7035 0.00081008 321270 152.78 321280 152.78 628.644668926636 51.507 1.3658 51.507 50.675 52.041 0 102 46 3 0.976828340938848 0.00185196219015264 0.00468767903762017 0.0070301 1 11993 86.548 66.728 6 17886000 11249 13262 13244 12655 12530 13551 12669 12593 15246 3555.9 10652 12525 13213 13045 12762 13537 12960 12776 14934 3639.8 1 1 1 1 1 1 1 1 1 1 2992 74 2644 2791 3330 3330 123;124 LVEQANSPK 9 Phospho (STY) _LVEQANS(ph)PK_ LVEQANS(1)PK LVEQANS(121.71)PK 0 0 1 0 O95391 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 508.613189697266 3 355.83739 1064.49034 43152.1934728811 1.4832 0.00052777 429340 152.78 429340 152.78 508.612488992768 51.084 0.63971 51.084 50.791 51.431 0 72 21 4 0.777680358302634 0.00253800082902979 0.0167593326419524 0.00018951 1 11850 121.71 82.445 1 52011000 19201 13722 19021 13255 9188.9 17910 8490.3 13372 12918 1857.7 18169 12960 19041 13713 9899.7 17691 8797.2 13645 12558 2058.8 1 1 1 1 1 1 1 1 1 1 2993 244 2645 2792 3331 3331 415 LVESECLQANLVEMLFSED 19 Unmodified _LVESECLQANLVEMLFSED_ 0 0 0 0 Q9BRA2 Q9BRA2 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.738586425781 3 742.681672 2225.02319 34612.6828831357 1.9225 0.0014278 102850 76.387 102850 76.389 819.404065377906 103.74 0.14193 103.74 103.66 103.8 -1.4211E-14 17 4 5 0.879493509761799 0.00221996524851409 0.0578907586481834 0.0086939 1 24445 80.638 62.721 1 8355200 1484.4 2205.4 1742.5 1865.4 2270.5 1720.7 1742.2 1867.8 2808.2 13114 1405.6 2081.4 1745.3 1933.8 2266.5 1757.8 1827.9 2263 2725.6 12391 1 1 1 1 1 1 1 1 1 1 2994 1809 2646 2793 3332 3332 LVGATATSSPPPK 13 Phospho (STY) _LVGATATSS(ph)PPPK_ LVGATAT(0.002)S(0.102)S(0.896)PPPK LVGAT(-44.12)AT(-26.65)S(-9.44)S(9.44)PPPK 0 0 1 0 Q96QD9 Q96QD9 Q96QD9 FYTTD1 UAP56-interacting factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 588.662475585938 3 435.886521 1304.63773 40549.7730615331 1.6622 0.00072452 350490 152.77 350490 152.77 588.661794728225 58.862 1.4151 58.862 58.349 59.764 7.1054E-15 176 48 6 0.840664738641202 0.00209434982883421 0.0314388191333528 0.003052 1 13786 92.939 76.166 4 39018000 8364.6 12363 9345.7 11799 9134 8444.6 10571 11323 13435 9372.3 7918.8 11676 9354.3 12096 9304.8 8667.9 10770 11529 13134 9087.2 1 1 1 1 1 1 1 1 1 1 2995 1731 2647 2794 3333 3333 3179 LVGIISSR 8 Phospho (STY) _LVGIISS(ph)R_ LVGIIS(0.021)S(0.979)R LVGIIS(-16.74)S(16.74)R 0 0 1 0 P12268 P12268 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.331176757813 2 462.749343 923.484133 40952.9100942051 1.7501 0.00080988 247610 114.58 247610 114.58 577.330818605834 77.676 0.83697 77.676 77.339 78.176 1.4211E-14 46 28 2 0.796282148510551 0.00558856404194127 0.164995877057262 0.032439 1 18203 59.052 18.328 2 42486000 23561 21969 24420 22076 14595 18828 13282 19629 23741 5706.2 22298 20754 24418 22609 15382 19038 13869 19830 22981 5827.4 1 1 1 1 1 1 1 1 1 1 2996 369 2648 2795 3334 3334 601 LVLAESPQPK 10 Phospho (STY) _LVLAES(ph)PQPK_ LVLAES(1)PQPK LVLAES(109.72)PQPK 0 0 1 0 P78312 P78312 P78312 FAM193A Protein FAM193A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.644836425781 3 387.86869 1160.58424 42288.2753293014 1.4883 0.00057726 393880 152.78 393890 152.78 540.643917632145 72.647 0.46852 72.647 72.398 72.867 0 39 15 3 0.987580166841333 0.00242093728775632 0.0442371177752896 0.00020926 1 17037 109.72 71.7 1 16796000 6668.7 7014.1 6448.9 7316.9 6509.8 6341.2 6715.7 6825.4 7743.2 2521.7 6309.5 6627.7 6507.4 7478.6 6606.4 6410.5 6854.2 6903.6 7596.7 2532.5 1 1 1 1 1 1 1 1 1 1 2997 792 2649 2796 3335 3335 1265 LVPLLDTGDIIIDGGNSEYR 20 Unmodified _LVPLLDTGDIIIDGGNSEYR_ 0 0 0 0 P52209 P52209 P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.434692382813 3 720.710948 2159.11101 34655.8879673021 1.2367 0.00089127 105990 76.388 105990 76.389 797.433180873367 101.2 0.17078 101.2 101.13 101.3 0 15 5 5 0.952003132716053 0.00727060664352801 0.13238323947291 2.3366E-08 1 23755 171.25 155.71 1 29736000 5203.7 6381.5 4680.8 5968.8 6908.2 5183.1 7174.2 6975.4 5622.6 26543 4922.1 6026 4771.1 6141.2 6881.2 5302.8 7247.4 7727.2 5613.7 25155 1 1 1 1 1 1 1 1 1 1 2998 687 2650 2797 3336 3336 LVPSQEETK 9 Phospho (STY) _LVPS(ph)QEETK_ LVPS(1)QEETK LVPS(37.45)QEET(-37.45)K 0 0 1 0 P49321 P49321 P49321 NASP Nuclear autoantigenic sperm protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.921997070313 2 555.757562 1109.50057 34973.0607244688 2.0202 0.0011227 412340 229.16 412350 229.16 784.920513790507 57.423 0.66005 57.423 57.072 57.732 0 55 20 3 0.992705448553514 0.00298474941866963 0.154806360531764 7.4245E-05 1 13431 135.08 100.33 2 24834000 17173 45032 18357 42409 41724 17183 38767 34319 47178 13530 16254 42525 18697 43299 40928 18589 39834 34168 46194 13534 1 1 1 1 1 1 1 1 1 1 2999 635 2651 2798 3337 3337 1051 LVPVSPLPPK 10 Phospho (STY) _LVPVS(ph)PLPPK_ LVPVS(1)PLPPK LVPVS(67.15)PLPPK 0 0 1 0 O95396 O95396 O95396 MOCS3 Adenylyltransferase and sulfurtransferase MOCS3;Molybdopterin-synthase adenylyltransferase;Molybdopterin-synthase sulfurtransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 528.989807128906 3 376.213909 1125.6199 43823.4152829958 1.0177 0.00038288 406090 152.78 406090 152.78 528.989234723579 85.113 1.1766 85.113 84.753 85.929 0 57 40 2 0.809898526333663 0.00127669403451638 0.0273061325243988 0.010692 1 19888 67.153 42.299 1 6128200 3211 3256.9 3427.6 3048.1 2639.9 3141.8 3228.3 3570.9 3519.5 2670.9 3039.3 3075.5 3430.4 3143.9 2734.1 3155.4 3265.9 3645.7 3460.4 2597.6 1 1 1 1 1 1 1 1 1 1 3000 246 2652 2799 3338 3338 417 LVQDVANNTNEEAGDGTTTATVLAR 25 Unmodified _LVQDVANNTNEEAGDGTTTATVLAR_ 0 0 0 0 P10809 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 930.475280761719 3 854.087694 2559.24125 31565.5861598274 2.1263 0.0018161 89436 76.387 89439 76.388 930.472244268106 71.981 0.88058 71.981 71.693 72.573 0 92 29 6 0.884929803177477 0.00405204999815792 0.0439864162165338 1.1189E-17 1 16867 224.99 202.68 1 87880000 8279.7 7660.7 8118.3 9610.5 7666.2 8974.8 8791.5 7808 12962 42170 7834.1 7247.9 8180.6 9738.6 7826.2 9089 9009.1 9147.8 12613 39889 1 1 1 1 1 1 1 1 1 1 3001 357 2653 2800 3339 3339 LWGSIQSR 8 Phospho (STY) _LWGS(ph)IQSR_ LWGS(0.945)IQS(0.055)R LWGS(12.39)IQS(-12.39)R 0 0 1 0 P78395 P78395 P78395 PRAME Melanoma antigen preferentially expressed in tumors MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.324157714844 2 513.742049 1025.46955 40146.6407393049 2.1042 0.001081 223030 114.58 223030 114.58 628.323275429459 74.273 0.46789 74.273 74.041 74.509 0 37 15 3 0.976653830482834 0.00131921340385515 0.0780373865419345 0.011993 1 17436 82.417 53.172 2 9043100 4724.1 14613 6598.7 15306 7329 5346.5 7528.3 8242.5 16003 9714 4477.3 13808 6546.1 15513 7405.2 5858.2 7885.7 8448.3 15431 9337.6 1 1 1 1 1 1 1 1 1 1 3002 801 2654 2801 3340 3340 1280 LYGSAGPPPTGEEDTAEKDEL 21 Unmodified _LYGSAGPPPTGEEDTAEKDEL_ 0 0 0 1 P11021 P11021 P11021 HSPA5 78 kDa glucose-regulated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.110595703125 3 726.002456 2174.98554 32590.0868885886 1.9896 0.0014445 210430 152.78 210440 152.78 879.112632519757 72.4 0.97269 72.4 71.954 72.927 0 129 32 6 0.973109816088425 0.00765534004767885 0.0967289538381345 7.4356E-23 1 16924 263.52 237.31 1 98606000 28227 14619 30227 15947 23034 30825 27902 27092 15867 17639 26718 13818 30243 16532 23857 30219 27839 27852 16166 17236 1 1 1 1 1 1 1 1 1 1 3003 358 2655 2802 3341 3341 LYINHTPPPLSK 12 Phospho (STY) _LYINHT(ph)PPPLSK_ LYINHT(1)PPPLSK LY(-50.84)INHT(50.84)PPPLS(-51.76)K 0 0 1 0 Q8NI27 Q8NI27 Q8NI27 THOC2 THO complex subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.359802246094 3 487.249682 1458.72722 39280.1900609189 1.9771 0.00096334 313550 152.78 313550 152.78 640.024681380013 71.469 1.1627 71.469 71.002 72.165 1.4211E-14 115 39 5 0.797423972363258 0.00221496604104384 0.0293032316949328 0.0091703 1 16724 84.046 61.129 3 26039000 9983.7 12390 13828 11725 8702.9 12969 9224.2 11895 12407 6208.7 9461.5 11700 13641 12099 9144.7 12942 9451.5 12160 12107 6121.6 1 1 1 1 1 1 1 1 1 1 3004 1530 2656 2803 3342 3342 4696 LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 37 Oxidation (M) _LYQSAGGMPGGM(ox)PGGFPGGGAPPSGGASSGPTIEEVD_ LYQSAGGM(0.028)PGGM(0.972)PGGFPGGGAPPSGGASSGPTIEEVD LYQSAGGM(-15.37)PGGM(15.37)PGGFPGGGAPPSGGASSGPTIEEVD 0 1 0 0 P11142 P11142 P11142 HSPA8 Heat shock cognate 71 kDa protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1198.56359863281 3 1121.50285 3361.48672 28322.331524427 1.3623 0.0015278 68112 76.388 68113 76.389 1198.55939998844 85.227 0.60576 85.227 84.813 85.419 0 44 20 3 0.731229110173537 0.00161633240707998 0.0380702605671819 0.013297 1 19890 59.694 51.825 2 12316000 994.6 1215.7 1699.4 1583 1480.4 1258.2 1491.9 1936 1192 21230 943.79 1150.6 1668 1597.8 1515.1 1324.2 1509.8 2555.4 1188.9 20035 1 1 1 1 1 1 1 1 1 1 3005 359 2657 2804 3343 3343 44;45 LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 37 Oxidation (M) _LYQSAGGM(ox)PGGMPGGFPGGGAPPSGGASSGPTIEEVD_ LYQSAGGM(0.97)PGGM(0.03)PGGFPGGGAPPSGGASSGPTIEEVD LYQSAGGM(15.05)PGGM(-15.05)PGGFPGGGAPPSGGASSGPTIEEVD 0 1 0 0 P11142 P11142 P11142 HSPA8 Heat shock cognate 71 kDa protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1198.22692871094 3 1121.50285 3361.48672 28827.1834028695 1.2373 0.0013877 68112 76.388 68113 76.389 1198.56037238127 86.515 0.59943 86.515 86.248 86.848 1.4211E-14 51 20 4 0.954174614777432 0.000685505388381239 0.0148409753689401 0.010607 2 20169 61.372 53.503 2 9852800 3118.4 2668.1 3113.5 2773.3 3534.5 3468.9 3575.2 4468.6 2773.4 42080 2950.8 2521.1 3140.6 2852.3 3561.7 3537.8 3615.3 5711.5 2770.5 39727 2 2 2 2 2 2 2 2 2 2 3006 359 2657 2804 3344;3345 3344 44;45 LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 37 Unmodified _LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD_ 0 0 0 0 P11142 P11142 P11142 HSPA8 Heat shock cognate 71 kDa protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1192.89147949219 3 1116.17121 3345.49181 28922.834863807 1.6415 0.0018321 68436 76.387 68438 76.388 1192.89156311743 93.573 0.84479 93.573 93.12 93.965 1.4211E-14 132 28 6 0.97956265880126 0.00210486471969399 0.0659908251644116 0.0059629 1 21733 72.348 59.027 1 36064000 2575 2822.8 3329.3 2022.9 1689.7 2583.3 2504.7 3438 3750.3 22211 2439.4 2662.1 3290.5 2134.9 1824.2 2616.9 2544.6 4084.7 3647.6 20994 1 1 1 1 1 1 1 1 1 1 3007 359 2657 2805 3346 3346 LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 37 Unmodified _LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD_ 0 0 0 0 P11142 P11142 P11142 HSPA8 Heat shock cognate 71 kDa protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.924011230469 4 837.380228 3345.49181 33122.140287767 1.5803 0.0013233 68415 57.29 68417 57.291 895.1722010635 93.535 0.96602 93.535 93.06 94.026 0 129 32 6 0.942878026242856 0.00371656661395003 0.114822195636554 0.033015 1 21827 46.32 38.156 1 23665000 2773.5 3381.9 2264.6 3396.2 3310.1 2727 3058.8 3482.4 3579.7 28869 2622.5 3194.8 2321.9 3475.5 3294.3 2827.1 3139.9 4333.7 3510 27264 1 1 1 1 1 1 1 1 1 1 3008 359 2657 2805 3347 3347 LYSILQGDSPTK 12 Phospho (STY) _LYSILQGDS(ph)PTK_ LYSILQGDS(0.99)PT(0.01)K LY(-90.36)S(-81.16)ILQGDS(19.96)PT(-19.96)K 0 0 1 0 O15042 O15042 O15042 U2SURP U2 snRNP-associated SURP motif-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 621.005187988281 3 467.893564 1400.65886 41298.0085653919 0.9845 0.00046064 326520 152.78 326520 152.78 621.003732438283 91.348 0.54264 91.348 91.084 91.627 0 31 18 3 0.902822849255691 0.00101122898656074 0.0118407284505673 0.00014235 1 21289 103.77 87.876 4 10151000 3256.6 6292 2842 5849.5 2499.3 3155.9 2678.6 4098.3 6912 7083.9 3080 5941.3 2881.7 5989.8 2563 3308.7 2833.9 4287.8 6640.6 6765.2 1 1 1 1 1 1 1 1 1 1 3009 77 2658 2806 3348 3348 136 LYSLLGIDLTAPSNNSSPR 19 Phospho (STY) _LYSLLGIDLTAPS(ph)NNSSPR_ LYSLLGIDLT(0.001)APS(0.333)NNS(0.333)S(0.333)PR LY(-57.93)S(-57.83)LLGIDLT(-27.2)APS(0)NNS(0)S(0)PR 0 0 1 0 A3KN83 A3KN83 A3KN83 SBNO1 Protein strawberry notch homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.734924316406 3 700.01206 2097.01435 36317.9723633491 1.399 0.00097932 109120 76.388 109130 76.389 776.734637614484 102.03 0.17027 102.03 101.9 102.07 0 7 5 2 0.803953293042609 0.00151031937945637 0.0275847566029418 0.013117 1 24036 66.12 46.281 6 31756000 3846.2 4977.1 3919 4590.4 5104.2 4446.1 6444.7 4761.5 4026.8 47633 3639.7 4699.4 3959 4734.6 5126.4 4556.7 6429.6 6199.2 4075.8 44963 1 1 1 1 1 1 1 1 1 1 3010 6 2659 2807 3349 3349 11;12;13 MAEESSSSSSSSSPTAATSQQQQLK 25 Phospho (STY) _MAEESSSSSSSSS(ph)PTAATSQQQQLK_ MAEESSSSSSS(0.001)S(0.02)S(0.972)PT(0.007)AATSQQQQLK MAEES(-72.73)S(-65.39)S(-57.9)S(-55.41)S(-46.91)S(-38.23)S(-29.38)S(-16.86)S(16.86)PT(-21.38)AAT(-54.46)S(-70.63)QQQQLK 0 0 1 0 Q13620 Q13620 Q13620 CUL4B Cullin-4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1028.48681640625 3 875.372493 2623.09565 31735.9183109249 2.0853 0.0018254 174530 152.78 174530 152.78 1028.48619170268 49.449 0.34396 49.449 49.228 49.572 0 26 11 3 0.892709181837949 0.000629388569752498 0.00392520665684383 3.239E-12 1 11496 196.89 181.97 12 16607000 3383.9 3455.6 3453.4 4030.5 3426 3812.6 3394.4 5219.8 5013.4 9859.3 3202.3 3267.6 3473 4099.8 3479.4 3867.5 3501.1 5478.4 4878 9404.6 1 1 1 1 1 1 1 1 1 1 3011 975 2660 2808 3350 3350 1651 MAKLESSFKCIK 12 2 Phospho (STY) _MAKLES(ph)S(ph)FKCIK_ MAKLES(1)S(1)FKCIK MAKLES(41.54)S(41.54)FKCIK 0 0 2 2 REV__O75881 REV__O75881 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.3427734375 4 401.177165 1600.67955 39928.3594134922 2.4873 0.00099786 571230 229.16 571230 229.17 630.592317502933 66.33 0.34735 66.33 66.14 66.487 0 34 11 4 0.983918778476885 0.00278443327258118 0.0443018249348746 0.056604 1 15576 41.54 8.9904 1 18541000 6269.8 7449.1 6743.8 6681 5545.8 6123.6 4719.4 6820.9 7880.7 2636.7 5934.6 7032.6 6747.2 6897.8 5690 6176.6 4930.2 6894.3 7641.8 2640.6 1 1 1 1 1 1 1 1 1 1 + 3012 2327 2661 2809 3351 3351 4284;4285 MALPPQEDATASPPR 15 Oxidation (M),Phospho (STY) _M(ox)ALPPQEDATAS(ph)PPR_ M(1)ALPPQEDATASPPR MALPPQEDAT(0.032)AS(0.968)PPR M(141.64)ALPPQEDATASPPR MALPPQEDAT(-14.84)AS(14.84)PPR 0 1 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.97216796875 3 559.583172 1675.72769 38245.598356144 1.4713 0.00082332 136510 76.388 136510 76.388 635.970832518191 46.485 1.7411 46.485 45.526 47.267 -7.1054E-15 169 59 4 0.711659138799235 0.00520117292662119 0.111658258193788 7.7573E-07 2 10790 141.64 125.45 2 46428000 39982 42267 42265 40066 52199 40519 44137 38529 42019 14708 37842 39915 42534 41280 52269 40596 45257 39168 41550 14741 2 2 2 2 2 2 2 2 2 2 3013 2226 2662 2810 3352;3353 3353 240 4056;4825 MALPPQEDATASPPR 15 Oxidation (M),Phospho (STY) _M(ox)ALPPQEDATAS(ph)PPR_ M(1)ALPPQEDATASPPR MALPPQEDAT(0.182)AS(0.818)PPR M(125.03)ALPPQEDATASPPR MALPPQEDAT(-6.52)AS(6.52)PPR 0 1 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.971008300781 3 559.583172 1675.72769 NaN NaN NaN NaN NaN NaN NaN NaN 47.497 1 47.497 46.997 47.997 0 NaN NaN NaN 5.6584E-05 1 11000 125.03 104.37 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3014 2226 2662 2810 3354 3354 240 4056;4825 MALPPQEDATASPPR 15 Phospho (STY) _MALPPQEDATAS(ph)PPR_ MALPPQEDATAS(1)PPR MALPPQEDAT(-33.66)AS(33.66)PPR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.64013671875 3 554.251534 1659.73277 38464.9506844724 1.564 0.00086685 137820 76.388 137820 76.388 630.63941316597 61.724 5.6081 61.724 60.023 65.631 0 614 192 5 0.960001240488421 0.0143077995321228 0.18813723958686 3.1237E-16 5 14361 239.64 218.11 2 122910000 52017 43948 55266 48180 47576 55402 49650 53328 52413 23846 49233 41540 55373 49328 48766 55229 50515 54291 51599 23688 5 5 5 5 5 5 5 5 5 5 3015 2226 2662 2811 3355;3356;3357;3358;3359 3356 4056;4825 MALPPQEDATASPPRQK 17 Phospho (STY) _MALPPQEDATAS(ph)PPRQK_ MALPPQEDAT(0.044)AS(0.956)PPRQK MALPPQEDAT(-13.37)AS(13.37)PPRQK 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.747009277344 3 639.636047 1915.88631 33738.5506627664 1.9394 0.0012405 238850 152.77 238850 152.78 792.745063113646 57.664 2.299 57.664 56.337 58.636 0 190 78 3 0.95577339676687 0.00262074103765276 0.0144562438682594 4.8553E-05 2 13342 120.23 104.11 2 20556000 40873 44811 45010 39333 34511 47395 39347 41401 43168 49335 38692 42300 44965 40850 35713 47165 39924 43247 42432 47413 2 2 2 2 2 2 2 2 2 2 3016 2226 2663 2812 3360;3361 3360 4056;4825 MALPPQEDATASPPRQK 17 Phospho (STY) _MALPPQEDAT(ph)ASPPRQK_ MALPPQEDAT(0.551)AS(0.449)PPRQK MALPPQEDAT(0.89)AS(-0.89)PPRQK 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.405639648438 3 639.636047 1915.88631 NaN NaN NaN NaN NaN NaN NaN NaN 58.936 1 58.936 58.436 59.436 0 NaN NaN NaN 0.034388 1 13811 58.904 43.814 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3017 2226 2663 2812 3362 3362 4056;4825 MANSSPVLSK 10 Oxidation (M),Phospho (STY) _M(ox)ANSS(ph)PVLSK_ M(1)ANSSPVLSK MANS(0.224)S(0.773)PVLS(0.003)K M(91.64)ANSSPVLSK MANS(-5.38)S(5.38)PVLS(-23.98)K 0 1 1 0 Q9NXE8 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.416748046875 2 565.251589 1128.48863 36047.3486533823 1.9454 0.0010996 405420 229.16 405420 229.17 794.416485725528 47.773 0.34546 47.773 47.6 47.946 0 26 11 3 0.939770600731849 0.000567065890733927 0.0254591645174427 0.0046819 1 11087 91.64 50.1 3 9502100 21682 19650 23313 20833 16692 23842 16078 19127 19371 24348 20523 18570 23298 21367 17325 23751 16486 20102 18973 23370 1 1 1 1 1 1 1 1 1 1 3018 2064 2664 2813 3363 3363 219 3731;3732 MANSSPVLSK 10 Phospho (STY) _MANS(ph)SPVLSK_ MANS(0.499)S(0.499)PVLS(0.001)K MANS(0)S(0)PVLS(-26.29)K 0 0 1 0 Q9NXE8 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.417846679688 2 557.254132 1112.49371 35700.446939475 1.9684 0.0010969 411240 229.16 411240 229.16 786.41809333795 58.224 0.4999 58.224 57.963 58.463 0 33 16 3 0.814092663965407 0.00142825364892016 0.0270722930742813 0.00030031 1 13616 113.86 67.83 3 34421000 40844 30810 40132 28835 25160 40893 24446 29571 32370 36121 38646 29094 40267 29921 26413 40377 25135 31189 31603 34696 1 1 1 1 1 1 1 1 1 1 3019 2064 2664 2814 3364 3364 3731;3732 MAPALSGANLTSPR 14 Phospho (STY) _MAPALSGANLTS(ph)PR_ MAPALSGANLT(0.017)S(0.983)PR MAPALS(-40.81)GANLT(-17.54)S(17.54)PR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.928527832031 2 733.347084 1464.67961 33455.3995944661 1.7968 0.0013177 156240 114.58 156250 114.58 847.927966260039 69.509 1.0759 69.509 68.941 70.017 0 94 36 5 0.579367357108049 0.00424865085364183 0.114853134416271 0.00024086 1 16305 110.06 84.476 3 33703000 33379 24970 34183 24621 16004 32040 14722 27190 27635 38932 31588 23586 34149 25420 17308 31797 15401 28634 26720 37289 1 1 1 1 1 1 1 1 1 1 3020 2226 2665 2815 3365 3365 4057 MAPPVDDLSPK 11 Phospho (STY) _MAPPVDDLS(ph)PK_ MAPPVDDLS(1)PK MAPPVDDLS(178.84)PK 0 0 1 0 Q92576 Q92576 Q92576 PHF3 PHD finger protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 569.964477539063 3 417.189323 1248.54614 41983.7835403448 1.8517 0.00077253 366200 152.77 366200 152.78 569.964404941404 71.504 0.81822 71.504 71.229 72.047 0 88 27 5 0.988462639502784 0.00218937497726861 0.100312804729103 3.6035E-10 1 16762 178.84 135.24 1 26341000 8317.7 7028.4 8449.4 6578.5 5292.8 8067.7 5683.9 7699.3 6582.7 2405.2 7871.2 6637 8462.6 6806 5563.9 8020.1 5791.5 7809.7 6457.1 2443 1 1 1 1 1 1 1 1 1 1 3021 1602 2666 2816 3366 3366 2942 MAPTPIPTRSPSDSSTASTPVAEQIER 27 Oxidation (M),Phospho (STY) _M(ox)APTPIPT(ph)RSPSDSSTASTPVAEQIER_ M(1)APTPIPTRSPSDSSTASTPVAEQIER MAPTPIPT(0.558)RS(0.43)PS(0.012)DSSTASTPVAEQIER M(129.46)APTPIPTRSPSDSSTASTPVAEQIER MAPT(-40.78)PIPT(1.13)RS(-1.13)PS(-16.82)DS(-40.33)S(-47.55)T(-46.7)AS(-60.75)T(-59.98)PVAEQIER 0 1 1 1 Q16643 Q16643 Q16643 DBN1 Drebrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1051.84533691406 3 974.78987 2921.34778 30498.5525721119 1.3843 0.0013494 78363 76.387 78364 76.388 1051.51037836278 59.963 0.86786 59.963 59.621 60.489 0 99 29 5 0.981818044962305 0.0026040335209955 0.0204619037963872 2.8356E-05 1 14035 129.46 110.9 9 36427000 4272.9 5507.5 4928 6231.4 7234.6 5255.7 9136.8 7732.7 6514.2 7271.6 4045.7 5206.8 4956.4 6338.4 7229.9 5356.4 9137.4 7879.6 6538.8 7026.1 1 1 1 1 1 1 1 1 1 1 3022 1110 2667 2817 3367 3367 149 1935;4585 MAPTPIPTRSPSDSSTASTPVAEQIER 27 Phospho (STY) _MAPTPIPTRS(ph)PSDSSTASTPVAEQIER_ MAPTPIPT(0.01)RS(0.909)PS(0.08)DS(0.001)STASTPVAEQIER MAPT(-56.67)PIPT(-19.61)RS(10.56)PS(-10.56)DS(-31.15)S(-55.19)T(-59.95)AS(-106.84)T(-129.6)PVAEQIER 0 0 1 1 Q16643 Q16643 Q16643 DBN1 Drebrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1046.18188476563 3 969.458232 2905.35287 30455.8389675198 1.3804 0.0013382 78795 76.388 78796 76.389 1046.18043752862 66.601 0.9525 66.601 66.316 67.269 0 141 32 6 0.978232845168712 0.00521571552594223 0.14489054212452 1.9768E-43 1 15605 346.77 313.51 9 69664000 6274.9 7738.4 5903.7 7253.7 8720 6635.3 9655.2 7935.9 7854.3 10610 5936.2 7307.4 6002.2 7467.5 8694.3 6714.8 9734 8229.6 7826.2 10174 1 1 1 1 1 1 1 1 1 1 3023 1110 2667 2818 3368 3368 1935;4585 MASPPAPSPAPPAISPIIK 19 Phospho (STY) _MAS(ph)PPAPSPAPPAISPIIK_ MAS(0.999)PPAPS(0.001)PAPPAISPIIK MAS(31.95)PPAPS(-31.95)PAPPAIS(-109.06)PIIK 0 0 1 0 Q00587 Q00587 Q00587 CDC42EP1 Cdc42 effector protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.443542480469 3 641.333417 1920.97842 35836.7117166788 2.2425 0.0014382 238210 152.77 238220 152.78 794.44175179365 90.411 0.54828 90.411 90.101 90.65 0 43 18 3 0.973497128994824 0.00267881431485863 0.0743770544778336 6.661E-06 1 21041 135.21 115.9 3 11303000 6706.4 6012.8 6863.6 6771.6 4068.2 6785.3 3206.6 6809.4 7383.4 18243 6346.5 5684.5 6866.4 6906.8 4285.3 6835.3 3419.8 7379.1 7108 17336 1 1 1 1 1 1 1 1 1 1 3024 824 2668 2819 3369 3369 1322 MDDREDLVYQAK 12 Acetyl (Protein N-term) _(ac)MDDREDLVYQAK_ 1 0 0 1 P62258 P62258 P62258 YWHAE 14-3-3 protein epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.436401367188 2 762.85358 1523.69261 33009.6931424143 1.8752 0.0014305 150200 114.58 150200 114.58 877.435276020854 63.554 0.49662 63.554 63.285 63.782 -7.1054E-15 48 16 4 0.891636099157373 0.00265970389912606 0.0372373886693675 1.1907E-16 1 14903 108.57 68.503 1 24127000 21985 25472 23922 23026 17679 22598 18121 22242 23768 9565.5 20810 24049 23901 23785 18321 22684 18579 22613 23213 9521.8 1 1 1 1 1 1 1 1 1 1 3025 758 2669 2820 3370 3370 MDLAAAAEPGAGSQHLEVR 19 Acetyl (Protein N-term),Phospho (STY) _(ac)MDLAAAAEPGAGS(ph)QHLEVR_ MDLAAAAEPGAGS(1)QHLEVR MDLAAAAEPGAGS(101.45)QHLEVR 1 0 1 0 Q14566 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.3115234375 3 682.310111 2043.9085 39085.6864350129 1.4043 0.00095815 0.15436 0.00010532 1.5586 0.0010635 682.309782010264 76.898 0.49585 76.898 76.617 77.113 0 42 16 4 0.956744946103208 0.00109143897896696 0.00923252807116966 1.1075E-05 1 18039 101.45 86.055 1 6485900 6144.4 5911.8 5467 6378.9 4677.9 5177.3 5355.1 5601.9 6518.6 7276.4 5811.6 5587.3 5535.5 6501.8 4804.4 5262.1 5450.4 5821.9 6382.6 6981.3 1 1 1 1 1 1 1 1 1 1 3026 1011 2670 2821 3371 3371 1718 MDLAAAAEPGAGSQHLEVRDEVAEK 25 Acetyl (Protein N-term),Phospho (STY) _(ac)MDLAAAAEPGAGS(ph)QHLEVRDEVAEK_ MDLAAAAEPGAGS(1)QHLEVRDEVAEK MDLAAAAEPGAGS(144.55)QHLEVRDEVAEK 1 0 1 1 Q14566 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 982.806457519531 3 906.080985 2715.22112 31894.4812763184 1.4195 0.0012862 84305 76.387 84307 76.389 982.803392019978 76.599 0.46486 76.599 76.359 76.824 0 39 15 3 0.596944172850367 0.000996581836108424 0.0275810669516138 2.7438E-12 1 17968 144.55 115.28 1 11815000 4240.5 3801.2 4223.4 4020.9 3171.6 4650.9 4096.3 3514.5 4202.4 24884 4012.5 3592.1 4242.5 4125.2 3293.9 4666.3 4128.2 4319.1 4142 23512 1 1 1 1 1 1 1 1 1 1 3027 1011 2671 2822 3372 3372 1718 MDLFGDLPEPERSPRPAAGK 20 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)M(ox)DLFGDLPEPERS(ph)PRPAAGK_ M(1)DLFGDLPEPERSPRPAAGK MDLFGDLPEPERS(1)PRPAAGK M(135.66)DLFGDLPEPERSPRPAAGK MDLFGDLPEPERS(135.66)PRPAAGK 1 1 1 2 Q9H0C8 Q9H0C8 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.082702636719 3 774.359242 2320.0559 33171.4227802711 1.3658 0.0010577 98646 76.387 98647 76.388 851.080855974797 80.93 0.72649 80.93 80.609 81.335 -1.4211E-14 96 24 5 0.913212690032412 0.00416532869945192 0.0341691256662905 5.0121E-11 1 18915 135.66 129.08 1 46030000 13480 9490.1 11675 9066.1 11390 12085 10137 11335 11714 14952 12749 8962.6 11854 9383.2 11559 11998 10422 11850 11491 14342 1 1 1 1 1 1 1 1 1 1 3028 1901 2672 2823 3373 3373 205 3456 MDLFGDLPEPERSPRPAAGK 20 Acetyl (Protein N-term),Phospho (STY) _(ac)MDLFGDLPEPERS(ph)PRPAAGK_ MDLFGDLPEPERS(1)PRPAAGK MDLFGDLPEPERS(139.28)PRPAAGK 1 0 1 2 Q9H0C8 Q9H0C8 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.416076660156 3 769.027604 2304.06098 33612.1504467834 1.8067 0.0013894 99330 76.387 99331 76.389 845.749343609456 95.737 0.98412 95.737 95.305 96.289 0 123 33 6 0.691101788114224 0.0111262537650996 0.331959825880371 2.2783E-11 1 22239 139.28 127.51 1 86005000 21154 22965 23518 26496 18571 23015 18792 24264 26728 34905 20026 21715 23485 26934 19149 23306 19336 25342 26036 33429 1 1 1 1 1 1 1 1 1 1 3029 1901 2672 2824 3374 3374 3456 MDPLSELQDDLTLDDTSEALNQLK 24 Acetyl (Protein N-term) _(ac)MDPLSELQDDLTLDDTSEALNQLK_ 1 0 0 0 Q07960 Q07960 Q07960 ARHGAP1 Rho GTPase-activating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 992.826904296875 3 916.104022 2745.29024 32523.4138802834 1.5801 0.0014475 83382 76.387 83384 76.388 992.825673719843 102.99 0.14894 102.99 102.92 103.06 0 13 4 5 0.959425360908808 0.000541566171457433 0.00936292631252864 0.0081936 1 24286 61.511 44.432 1 21648000 3382.3 3243.7 3544.4 3219.7 3221.2 2714.9 3596.5 3881.9 3825.5 40459 3201.1 3064.1 3556.4 3299.2 3293.5 2834.6 3649.1 5067.7 3764.9 38186 1 1 1 1 1 1 1 1 1 1 3030 885 2673 2825 3375 3375 MDRNPSPPPPGR 12 Acetyl (Protein N-term),Phospho (STY) _(ac)MDRNPS(ph)PPPPGR_ MDRNPS(1)PPPPGR MDRNPS(83.2)PPPPGR 1 0 1 1 Q96ER3 Q96ER3 Q96ER3 SAAL1 Protein SAAL1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.816223144531 2 721.815951 1441.61735 37294.3380741975 1.553 0.001121 -0.45766 -0.00033035 1.0954 0.00079065 721.815556888578 32.026 0.85371 32.026 31.502 32.356 0 62 28 3 0.985403154342251 0.00105251712963276 0.0428625175241295 1.7376E-07 1 7128 83.204 57.192 1 10219000 4686.8 5095.1 5790.4 4768.3 5405 5251.7 4299.7 5516.8 5105.2 3954.2 4439 4811.3 5760.3 4923.7 5492.9 5253.3 4451.9 5642.6 5003.2 3851 1 1 1 1 1 1 1 1 1 1 3031 1672 2674 2826 3376 3376 3078 MDRTPPPPTLSPAAITVGR 19 2 Phospho (STY) _MDRT(ph)PPPPTLS(ph)PAAITVGR_ MDRT(1)PPPPT(0.304)LS(0.696)PAAITVGR MDRT(79.93)PPPPT(-3.59)LS(3.59)PAAIT(-42.45)VGR 0 0 2 1 Q8NDX5 Q8NDX5 Q8NDX5 PHC3 Polyhomeotic-like protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.391296386719 3 713.00194 2135.98399 35255.3060940105 2.0678 0.0014744 107140 76.388 107140 76.389 789.723846653575 73.89 1.0115 73.89 73.528 74.54 0 100 34 4 0.921436523292523 0.00139421444900515 0.0219467460077636 4.4657E-07 1 17382 145.79 130.09 6 16122000 8980.7 5959.7 10786 7946.2 6471.1 9295.3 6585.4 8813.9 7453.9 14553 8504.8 5641.2 10705 8059.3 6824.1 9278.3 6721.7 9298.2 7318 13907 1 1 1 1 1 1 1 1 1 1 3032 1512 2675 2827 3377 3377 2776;4687 MDSAGQDINLNSPNK 15 Acetyl (Protein N-term),Phospho (STY) _(ac)MDSAGQDINLNS(ph)PNK_ MDSAGQDINLNS(1)PNK MDS(-86.69)AGQDINLNS(86.69)PNK 1 0 1 0 O43399 O43399 O43399 TPD52L2 Tumor protein D54 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.6328125 3 575.909836 1724.70768 38420.9285025913 1.672 0.00096294 132640 76.387 132640 76.388 652.631449079188 67.731 0.58929 67.731 67.446 68.035 0 63 19 4 0.985044907719219 0.00451786399040802 0.118372399355619 2.3529E-07 1 15878 117.65 91.18 2 30750000 6421.7 8414 6774.2 6444.7 5765.8 6549.5 5435 7149.7 7785.9 6402.1 6077.9 7937.2 6788 6739.1 5908.2 6579.8 5612.6 7341.3 7582.6 6193.8 1 1 1 1 1 1 1 1 1 1 3033 110 2676 2828 3378 3378 186 MDSFDEDLARPSGLLAQER 19 Phospho (STY) _MDS(ph)FDEDLARPSGLLAQER_ MDS(1)FDEDLARPSGLLAQER MDS(54.58)FDEDLARPS(-54.58)GLLAQER 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 820.721801757813 3 743.999714 2228.97731 34319.518908474 1.9696 0.0014654 102670 76.387 102670 76.388 820.386313625929 88.549 1.3803 88.549 88.139 89.519 0 138 47 4 0.935317354881882 0.00338583360772916 0.073924698943552 1.6395E-07 1 20621 146.2 121.9 2 24916000 7346.4 5024.6 7895.2 6295.9 7390.9 7139 6526.3 8271.5 5263.8 41536 6953.6 4753.8 7910.6 6400.4 7516.7 7210.6 6650.1 9504.6 5247.3 39302 1 1 1 1 1 1 1 1 1 1 3034 2257 2677 2829 3379 3379 4178 MDSNFGLAGLPGSPK 15 Oxidation (M),Phospho (STY) _M(ox)DSNFGLAGLPGS(ph)PK_ M(1)DSNFGLAGLPGSPK MDSNFGLAGLPGS(1)PK M(105.6)DSNFGLAGLPGSPK MDS(-92.8)NFGLAGLPGS(92.8)PK 0 1 1 0 O43463 O43463 O43463 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.34521484375 3 529.568863 1585.68476 37108.2947712408 1.3712 0.00072613 288490 152.78 288490 152.78 682.678550997116 81.056 0.75164 81.056 80.695 81.447 0 63 25 4 0.947450918545716 0.0031518181617345 0.0370618841646693 0.00015464 1 18942 105.6 85.874 2 23297000 7665.9 6929.9 6704.2 7959.7 5059.5 6495.9 5085.1 6648.1 7004 5614.4 7250.3 6552.3 6785.9 8086.4 5233.7 6589 5227.5 6831.8 6829.5 5440.5 1 1 1 1 1 1 1 1 1 1 3035 113 2678 2830 3380 3380 11 194 MDSNFGLAGLPGSPK 15 Phospho (STY) _MDSNFGLAGLPGS(ph)PK_ MDSNFGLAGLPGS(1)PK MDS(-70.62)NFGLAGLPGS(70.62)PK 0 0 1 0 O43463 O43463 O43463 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.34814453125 3 524.237225 1569.68984 38671.3217184588 2.1392 0.0011214 291420 152.78 291430 152.78 677.012530179594 90.24 0.71992 90.24 89.898 90.618 1.4211E-14 87 24 5 0.937064256379321 0.00449620310324115 0.144199003239768 0.0046365 1 21007 88.983 60.007 2 36530000 6899.5 7517.7 7830.4 7540.1 5590.5 7186.8 5567.2 6099.6 8674.1 9027.8 6532.1 7101.8 7803.7 7734.9 5808.1 7222.9 5753.1 6432.5 8427 8641.9 1 1 1 1 1 1 1 1 1 1 3036 113 2678 2831 3381 3381 194 MDSNIQGIENPGFEASPPAQGIPEAK 26 Phospho (STY) _MDS(ph)NIQGIENPGFEASPPAQGIPEAK_ MDS(1)NIQGIENPGFEASPPAQGIPEAK MDS(89.78)NIQGIENPGFEAS(-89.78)PPAQGIPEAK 0 0 1 0 Q9H7M9 Q9H7M9 Q9H7M9 C10orf54 Platelet receptor Gi24 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1079.53649902344 3 926.421118 2776.24153 30113.7568888979 1.4331 0.0013276 164910 152.78 164910 152.78 1079.53214886005 85.237 0.60865 85.237 84.953 85.562 0 58 20 4 0.95227991300819 0.00387766846249605 0.0510627061446844 5.5422E-12 1 19900 190.72 172.85 2 14660000 2547.7 2322.8 3283.3 1803.3 10909 3650.3 10788 6713.3 2363.7 24562 2413.5 2191.3 3356.9 1913 10610 3661 10756 7355.3 2689.6 23283 1 1 1 1 1 1 1 1 1 1 3037 1952 2679 2832 3382 3382 3547 MEDLDQSPLVSSSDSPPRPQPAFK 24 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)M(ox)EDLDQSPLVSSSDS(ph)PPRPQPAFK_ M(1)EDLDQSPLVSSSDSPPRPQPAFK MEDLDQS(0.002)PLVS(0.036)S(0.1)S(0.28)DS(0.582)PPRPQPAFK M(74.73)EDLDQSPLVSSSDSPPRPQPAFK MEDLDQS(-24.31)PLVS(-12.06)S(-7.66)S(-3.18)DS(3.18)PPRPQPAFK 1 1 1 1 Q9NQC3 Q9NQC3 Q9NQC3 RTN4 Reticulon-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.607360839844 4 692.313662 2765.22554 36178.8432554623 1.6824 0.0011647 82753 57.291 82755 57.292 749.855175035962 78.36 0.82746 78.36 78.008 78.835 -1.4211E-14 113 28 5 0.821117086543601 0.00175141894788861 0.0284159436687722 0.00047257 1 18328 74.733 57.657 5 32086000 5547.3 7686.3 5972.5 6935 5093.1 6499.8 4862.4 5760.4 6353.7 8157.2 5250.8 7256.7 5978.3 7159.5 5218.6 6540.6 5001.4 6052.6 6206 7814.3 1 1 1 1 1 1 1 1 1 1 3038 2003 2680 2833 3383 3383 212 3637 MEDLDQSPLVSSSDSPPRPQPAFK 24 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)M(ox)EDLDQSPLVSSSDS(ph)PPRPQPAFK_ M(1)EDLDQSPLVSSSDSPPRPQPAFK MEDLDQSPLVS(0.001)S(0.005)S(0.029)DS(0.965)PPRPQPAFK M(174.86)EDLDQSPLVSSSDSPPRPQPAFK MEDLDQS(-66.29)PLVS(-30.16)S(-22.71)S(-15.2)DS(15.2)PPRPQPAFK 1 1 1 1 Q9NQC3 Q9NQC3 Q9NQC3 RTN4 Reticulon-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 999.478271484375 3 922.749124 2765.22554 31037.8280831347 1.7437 0.001609 82783 76.388 82784 76.389 999.470856158846 78.353 1.4114 78.353 77.923 79.334 0 212 48 7 0.979690639249785 0.000248862072316514 0.00702556824143369 6.0858E-14 1 18547 174.86 155.48 5 124460000 3244.6 5170.2 2889.2 4850.3 3496.1 2920.3 3629.8 4312.8 4510.9 18516 3068.9 4882.3 2937.4 4968.6 3514.7 3065.6 3712.5 4830 4413.6 17535 1 1 1 1 1 1 1 1 1 1 3039 2003 2680 2833 3384 3384 212 3637 MEDLDQSPLVSSSDSPPRPQPAFK 24 Acetyl (Protein N-term),Phospho (STY) _(ac)MEDLDQSPLVSSSDS(ph)PPRPQPAFK_ MEDLDQSPLVS(0.001)S(0.007)S(0.041)DS(0.951)PPRPQPAFK MEDLDQS(-66.35)PLVS(-29.02)S(-21.36)S(-13.65)DS(13.65)PPRPQPAFK 1 0 1 1 Q9NQC3 Q9NQC3 Q9NQC3 RTN4 Reticulon-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 994.140930175781 3 917.417485 2749.23063 31212.7919605362 1.8487 0.001696 83263 76.387 83265 76.389 994.138605548349 90.632 1.8339 90.632 90.192 92.026 0 265 63 7 0.875130557001859 0.0224607505581383 0.657681781523103 5.5333E-18 2 21076 192.18 175.46 5 295000000 24039 42937 22533 42679 25025 23297 29912 36234 43214 75746 22741 40559 22815 43526 25330 24522 30577 38126 42076 72162 2 2 2 2 2 2 2 2 2 2 3040 2003 2680 2834 3385;3386 3385 3637 MEDLDQSPLVSSSDSPPRPQPAFK 24 Acetyl (Protein N-term),Phospho (STY) _(ac)MEDLDQSPLVSSSDS(ph)PPRPQPAFK_ MEDLDQSPLVS(0.001)S(0.004)S(0.074)DS(0.921)PPRPQPAFK MEDLDQS(-64.79)PLVS(-27.94)S(-23.31)S(-10.98)DS(10.98)PPRPQPAFK 1 0 1 1 Q9NQC3 Q9NQC3 Q9NQC3 RTN4 Reticulon-4 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 993.804260253906 3 917.417485 2749.23063 NaN NaN NaN NaN NaN NaN NaN NaN 91.979 1 91.979 91.479 92.479 0 NaN NaN NaN 1.7647E-07 1 21428 122.53 103.15 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3041 2003 2680 2834 3387 3387 3637 MEDSMDMDMSPLRPQNYLFGCELK 24 Acetyl (Protein N-term),2 Oxidation (M),Phospho (STY) _(ac)M(ox)EDSMDM(ox)DMS(ph)PLRPQNYLFGCELK_ M(0.808)EDSM(0.528)DM(0.477)DM(0.187)SPLRPQNYLFGCELK MEDS(0.251)MDMDMS(0.749)PLRPQNYLFGCELK M(5.42)EDSM(-1.03)DM(1.03)DM(-6.67)SPLRPQNYLFGCELK MEDS(-3.75)MDMDMS(3.75)PLRPQNY(-59.24)LFGCELK 1 2 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1097.80090332031 3 1021.07676 3060.20845 30813.4655426488 1.7447 0.0017815 74810 76.387 74812 76.389 1098.13165558619 100.51 0.69794 100.51 100.11 100.81 0 66 24 4 0.84071880577115 0.00144679535144563 0.0155584240066083 0.00078439 1 23483 93.147 83 18 38460000 8361.3 9700.2 11041 11969 9650.6 10379 12981 14184 11606 83740 7922 9176.4 10953 12125 9921.3 10680 13015 16604 11510 79180 1 1 1 1 1 1 1 1 1 1 3042 315 2681 2835 3388 3388 33;34 521 MEDSMDMDMSPLRPQNYLFGCELK 24 Acetyl (Protein N-term),Phospho (STY) _(ac)MEDSMDMDMS(ph)PLRPQNYLFGCELK_ MEDS(0.02)MDMDMS(0.98)PLRPQNYLFGCELK MEDS(-16.93)MDMDMS(16.93)PLRPQNY(-42.96)LFGCELK 1 0 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1087.4697265625 3 1010.41348 3028.21862 31023.0120466438 1.0916 0.001103 75600 76.387 75601 76.389 1087.46899503349 101.75 0.36765 101.75 101.64 102.01 0 30 12 6 0.963217114882413 0.00302972335410636 0.0723661134081281 3.9579E-05 1 23956 86.48 73.422 3 44658000 9676 9771.2 10860 12658 9414.3 9547.4 10959 14271 13693 152730 9160.4 9246.9 10853 12771 9663.5 10056 11156 18734 13395 144140 1 1 1 1 1 1 1 1 1 1 3043 315 2681 2836 3389 3389 521 MEISAELPQTPQR 13 Phospho (STY) _MEISAELPQT(ph)PQR_ MEISAELPQT(1)PQR MEIS(-48.19)AELPQT(48.19)PQR 0 0 1 0 Q8IWV7 Q8IWV7 Q8IWV7 UBR1 E3 ubiquitin-protein ligase UBR1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.96826171875 3 527.244379 1578.71131 40403.0775610449 1.2274 0.00064713 144880 76.388 144880 76.389 603.632512805616 69.665 0.52978 69.665 69.402 69.932 0 54 17 4 0.989515261252078 0.00384373824881731 0.0730054987857799 0.012725 1 16321 78.249 63.277 2 17933000 5341.8 5282 6887.7 5345.5 6036.8 5552.2 5474.3 6002.4 6470.5 4209 5060.5 4990 6835.2 5488 6169.4 5569.6 5626.6 6130.2 6342.2 4102.2 1 1 1 1 1 1 1 1 1 1 3044 1417 2682 2837 3390 3390 4654 MEITIRNSPYR 11 Oxidation (M),Phospho (STY) _M(ox)EITIRNS(ph)PYR_ M(1)EITIRNSPYR MEIT(0.001)IRNS(0.997)PY(0.002)R M(71.89)EITIRNSPYR MEIT(-32.16)IRNS(26.97)PY(-26.97)R 0 1 1 1 P21127 P21127 P21127 CDK11B Cyclin-dependent kinase 11B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 568.949401855469 3 492.561931 1474.66396 41346.5805552128 0.8898 0.00043828 155080 76.387 155080 76.388 569.283448277831 47.172 0.4962 47.172 46.771 47.267 0 42 16 3 0.965268960641813 0.00166945708127693 0.00768194212300945 0.016696 1 10909 71.895 50.337 3 31740000 10906 11144 9928.2 11207 12752 9639.2 13220 11954 12074 3971 10316 10527 10089 11478 12779 9768.3 13403 12021 11962 4015.8 1 1 1 1 1 1 1 1 1 1 3045 449 2683 2838 3391 3391 60 729 MEITIRNSPYR 11 Phospho (STY) _MEITIRNS(ph)PYR_ MEITIRNS(1)PYR MEIT(-48.53)IRNS(39.3)PY(-39.3)R 0 0 1 1 P21127 P21127 P21127 CDK11B Cyclin-dependent kinase 11B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.619201660156 3 487.230293 1458.66905 40422.9154945943 1.3861 0.00067536 156780 76.388 156780 76.389 563.619252163016 61.847 2.3952 61.847 61.067 63.462 -7.1054E-15 204 81 5 0.827839708933018 0.00672132572418945 0.0951554290075952 0.0031792 1 14468 91.699 56.542 3 172730000 22067 26826 22608 28837 23912 22508 28961 30267 31453 3201.1 20883 25354 22760 29385 24262 22947 29306 30156 30929 3714.7 1 1 1 1 1 1 1 1 1 1 3046 449 2683 2839 3392 3392 729 MEITIRNSPYRR 12 Phospho (STY) _MEITIRNS(ph)PYRR_ MEIT(0.027)IRNS(0.916)PY(0.057)RR MEIT(-15.33)IRNS(12.07)PY(-12.07)RR 0 0 1 2 P21127 P21127 P21127 CDK11B Cyclin-dependent kinase 11B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.651000976563 3 539.263997 1614.77016 40030.7443414308 0.88064 0.0004749 141650 76.388 141650 76.388 615.986012091905 53.214 0.68715 53.214 53.027 53.714 0 83 23 5 0.980643218506042 0.00179384111675757 0.00819665464650905 0.053417 1 12388 49.224 23.076 3 68370000 17166 16824 16075 16153 18888 18446 20220 18369 18163 3750.2 16239 15890 16286 16663 19019 18393 20462 18542 18009 3956.4 1 1 1 1 1 1 1 1 1 1 3047 449 2684 2840 3393 3393 729 MEQTALSPEVR 11 Phospho (STY) _MEQTALS(ph)PEVR_ MEQT(0.002)ALS(0.998)PEVR MEQT(-26.9)ALS(26.9)PEVR 0 0 1 0 P12980 P12980 P12980 LYL1 Protein lyl-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.381408691406 2 670.799435 1339.58432 34569.3234243555 1.6481 0.0011055 170810 114.58 170810 114.58 785.381161502818 57.217 0.5483 57.217 56.958 57.506 0 56 18 4 0.990221288581036 0.00178937376112038 0.0251417618795476 1.0352E-14 1 13350 218.74 166.35 2 64350000 10781 25262 10883 26293 34608 10841 33539 24457 26869 24292 10202 23870 11241 26686 33698 11772 34008 24736 26794 23440 1 1 1 1 1 1 1 1 1 1 3048 373 2685 2841 3394 3394 609 MESQEPTESSQNGK 14 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)M(ox)ES(ph)QEPTESSQNGK_ M(1)ESQEPTESSQNGK MES(1)QEPTESSQNGK M(167.67)ESQEPTESSQNGK MES(84.97)QEPT(-84.97)ES(-108.45)S(-122.33)QNGK 1 1 1 0 Q9UKK9 Q9UKK9 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 959.90283203125 2 845.319114 1688.62368 32299.171802937 1.9177 0.0016211 135540 114.58 135550 114.58 959.901382839284 30.863 0.86036 30.863 30.611 31.471 0 47 28 3 0.871064528573979 0.000457500105952433 0.0298936566284636 9.7157E-11 1 6888 167.67 158.24 4 6557400 2396.5 2067.1 2975.7 1530.9 5121.9 2319.6 6199.5 3931.2 1957.7 1434.7 2269.9 1949.6 2991.4 1617.2 5082.2 2312.8 6142.7 3924 2111.6 1442 1 1 1 1 1 1 1 1 1 1 3049 2174 2686 2842 3395 3395 228 3921 MESQEPTESSQNGK 14 Acetyl (Protein N-term),Phospho (STY) _(ac)MES(ph)QEPTESSQNGK_ MES(1)QEPTESSQNGK MES(74.04)QEPT(-74.04)ES(-90.84)S(-98.91)QNGK 1 0 1 0 Q9UKK9 Q9UKK9 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 951.903930664063 2 837.321657 1672.62876 32149.3886103622 1.2035 0.0010077 136840 114.58 136840 114.58 951.902805544833 40.81 0.9161 40.81 40.568 41.484 0 64 31 4 0.979936410710522 0.00111811397990467 0.0138787611668219 3.7204E-11 1 9286 174.41 156.67 4 33433000 5187.6 6068.8 6256.8 6133.4 18992 6128.2 18029 10150 7130.9 3790.8 4912.8 5733.3 6392.9 6293.6 18497 6200.4 18100 10140 7498.2 3804.4 1 1 1 1 1 1 1 1 1 1 3050 2174 2686 2843 3396 3396 3921 MESTAYPLNLSLKEEEEEEEIQSR 24 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)M(ox)ESTAYPLNLS(ph)LKEEEEEEEIQSR_ M(1)ESTAYPLNLSLKEEEEEEEIQSR MESTAYPLNLS(1)LKEEEEEEEIQSR M(165.02)ESTAYPLNLSLKEEEEEEEIQSR MES(-91.91)T(-80.46)AY(-102.15)PLNLS(67.55)LKEEEEEEEIQS(-67.55)R 1 1 1 1 Q9P215 Q9P215 Q9P215 POGK Pogo transposable element with KRAB domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1074.82788085938 3 998.105413 2991.29441 30177.0139150753 1.2709 0.0012685 76534 76.389 76535 76.39 1074.8273559216 86.121 0.54936 86.121 85.842 86.391 0 52 18 4 0.923403121180448 0.00319247642693262 0.0937362838058341 1.7508E-17 1 20094 165.02 155.05 5 10207000 1924.3 2351.3 1783.7 2006.8 2838.9 1428.2 3546.1 4479.1 1953 38141 1820.3 2219.3 1818.4 2072.2 2827.1 1567.5 3532 5523.9 1994.6 36018 1 1 1 1 1 1 1 1 1 1 3051 2099 2687 2844 3397 3397 221 3794 METEADAPSPAPSLGER 17 Phospho (STY) _METEADAPS(ph)PAPSLGER_ METEADAPS(1)PAPSLGER MET(-61.47)EADAPS(43.03)PAPS(-43.03)LGER 0 0 1 0 Q12873 Q12873 Q12873 CHD3 Chromodomain-helicase-DNA-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.984375 3 613.260646 1836.76011 37168.9222562915 1.4982 0.00091876 124560 76.387 124560 76.388 689.647946393929 56.344 0.7436 56.344 55.89 56.634 0 57 24 4 0.993256546480879 0.0032309300078254 0.03095260225452 0.003774 1 13173 91.276 78.427 3 23391000 19833 9090.6 21514 10042 14871 20915 14023 16681 9812 9877.3 18773 8593 21484 10427 15468 20444 14200 17194 9860.1 9686.7 1 1 1 1 1 1 1 1 1 1 3052 909 2688 2845 3398 3398 1496 METEQPEETFPNTETNGEFGK 21 Acetyl (Protein N-term) _(ac)METEQPEETFPNTETNGEFGK_ 1 0 0 0 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 896.403442382813 3 819.684798 2456.03256 33242.9854810768 1.6506 0.001353 93191 76.387 93192 76.388 896.406025532473 78.45 0.82613 78.45 77.979 78.805 0 140 28 6 0.975179413401501 0.00577115906549411 0.0836134706240494 1.0397E-07 1 18323 100.92 86.903 1 113620000 16206 15891 15219 15954 10719 15449 11277 16046 15901 17606 15331 15012 15328 16369 11156 15549 11579 16603 15493 16949 1 1 1 1 1 1 1 1 1 1 3053 752 2689 2846 3399 3399 METMASPGKDNYR 13 Acetyl (Protein N-term),Phospho (STY) _(ac)METMAS(ph)PGKDNYR_ MET(0.028)MAS(0.972)PGKDNYR MET(-15.45)MAS(15.45)PGKDNY(-95.19)R 1 0 1 1 O60684 O60684 O60684 KPNA6 Importin subunit alpha-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 925.905395507813 2 811.322948 1620.63134 31616.1916596728 1.8678 0.0015154 141230 114.58 141230 114.58 925.903407534421 57.434 0.51458 57.434 57.19 57.704 0 40 17 3 0.962832055251 0.00102991623023936 0.0454753240142253 1.2617E-10 1 13426 96.551 87.662 3 16535000 9877.3 15417 10477 16096 10793 8698.9 12525 14723 17531 10540 9348.7 14567 10522 16367 10963 9144.8 12803 14852 17085 10266 1 1 1 1 1 1 1 1 1 1 3054 153 2690 2847 3400 3400 260 METVSNASSSSNPSSPGR 18 Oxidation (M),Phospho (STY) _M(ox)ETVSNASSSSNPSS(ph)PGR_ M(1)ETVSNASSSSNPSSPGR METVSNASSSSNPS(0.221)S(0.779)PGR M(203.96)ETVSNASSSSNPSSPGR MET(-159.91)VS(-146.67)NAS(-118.26)S(-94.73)S(-79.86)S(-60.38)NPS(-5.48)S(5.48)PGR 0 1 1 0 Q9NTI5 Q9NTI5 Q9NTI5 PDS5B Sister chromatid cohesion protein PDS5 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.311767578125 3 630.922693 1889.74625 37120.7899212831 1.8669 0.0011778 121070 76.387 121070 76.389 707.644776227175 28.764 0.43317 28.764 28.523 28.957 3.5527E-15 46 14 4 0.99554128124502 0.00399533801529156 0.0304645772384562 2.335E-11 1 6385 203.96 190.98 8 24209000 4312.7 4303.5 4450.4 4072 4567.6 4167.1 3786.4 3935.4 4512.9 2192.4 4081.4 4064.1 4473.4 4196.6 4618 4173.8 3911.6 4022.5 4422.1 2155.5 1 1 1 1 1 1 1 1 1 1 3055 2031 2691 2848 3401 3401 217 3693 METVSNASSSSNPSSPGR 18 Phospho (STY) _METVSNASSSSNPSS(ph)PGR_ METVSNASSSSNPS(0.014)S(0.986)PGR MET(-183.51)VS(-171.72)NAS(-136.91)S(-114.49)S(-96.92)S(-70.81)NPS(-18.38)S(18.38)PGR 0 0 1 0 Q9NTI5 Q9NTI5 Q9NTI5 PDS5B Sister chromatid cohesion protein PDS5 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.313659667969 3 625.591055 1873.75134 37227.0316797878 1.3597 0.00085061 122100 76.388 122110 76.388 701.978909458133 39.775 0.61075 39.775 39.452 40.063 0 76 20 5 0.927387589840058 0.0058776402106682 0.0595616073241374 5.8673E-16 1 9003 223.19 204.11 8 101380000 16337 12580 18783 14037 15585 18326 17491 15482 15985 9257.4 15468 11893 18737 14393 16030 18160 17672 15919 15836 9075.3 1 1 1 1 1 1 1 1 1 1 3056 2031 2691 2849 3402 3402 3693 MEVGPFSTGQESPTAENAR 19 Phospho (STY) _MEVGPFSTGQES(ph)PTAENAR_ MEVGPFSTGQES(0.999)PT(0.001)AENAR MEVGPFS(-61.22)T(-57.12)GQES(29.25)PT(-29.25)AENAR 0 0 1 0 Q9Y4W2 Q9Y4W2 Q9Y4W2 LAS1L Ribosomal biogenesis protein LAS1L MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1159.02783203125 2 1044.44063 2086.8667 29591.4234318301 2.0389 0.0021295 109710 114.58 109710 114.58 1159.02287476128 73.894 0.37196 73.894 73.785 74.157 0 18 12 2 0.942111502539763 0.000256775770633408 0.00628455463839819 4.9401E-16 1 17361 232.51 215.63 4 8022200 2717.2 4675.6 2861.1 4800.1 3041.8 3444.6 2792.9 3177.6 4744.1 19572 2571.7 4417.6 2874.4 4899.2 3074.5 3546.7 2908.3 3787.5 4598.2 18503 1 1 1 1 1 1 1 1 1 1 3057 2287 2692 2850 3403 3403 4227 MEVKPPPGRPQPDSGR 16 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)M(ox)EVKPPPGRPQPDS(ph)GR_ M(1)EVKPPPGRPQPDSGR MEVKPPPGRPQPDS(1)GR M(53.62)EVKPPPGRPQPDSGR MEVKPPPGRPQPDS(53.62)GR 1 1 1 2 P51991 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.015747070313 3 629.292392 1884.85535 36135.8124341222 0.98635 0.0006207 121390 76.388 121390 76.389 705.680217896404 34.668 0.77855 34.668 34.313 35.092 0 71 26 3 0.863431652528248 0.00368450959872477 0.0437693544319711 0.024026 1 7810 53.625 34.894 1 26237000 13890 15541 15863 15489 14967 14286 13974 15961 16510 4149.3 13151 14680 15847 15888 15230 14402 14341 16070 16182 4276.5 1 1 1 1 1 1 1 1 1 1 3058 686 2693 2851 3404 3404 88 1153 MEVKPPPGRPQPDSGR 16 Acetyl (Protein N-term),Phospho (STY) _(ac)MEVKPPPGRPQPDS(ph)GR_ MEVKPPPGRPQPDS(1)GR MEVKPPPGRPQPDS(55.59)GR 1 0 1 2 P51991 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.683654785156 3 623.960754 1868.86043 36294.0745623691 0.67697 0.0004224 122420 76.387 122420 76.388 700.347857346195 47.218 1.4023 47.218 46.574 47.976 7.1054E-15 166 52 5 0.852418732989791 0.00322493403490497 0.0108130359994449 0.0041541 1 10834 55.588 34.649 1 200090000 18061 25722 19548 25272 16903 22850 18148 22924 24256 8007 17095 24297 19568 25937 17333 23028 18580 23233 23674 8070.1 1 1 1 1 1 1 1 1 1 1 3059 686 2693 2852 3405 3405 1153 MEVSPLQPVNENMQVNK 17 Acetyl (Protein N-term),Phospho (STY) _(ac)MEVS(ph)PLQPVNENMQVNK_ MEVS(1)PLQPVNENMQVNK MEVS(101.2)PLQPVNENMQVNK 1 0 1 0 P11388 P11388 P11388 TOP2A DNA topoisomerase 2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.036560058594 3 693.647736 2077.92138 34651.6108829471 1.3812 0.0009581 110120 76.387 110130 76.388 770.369611688076 86.358 0.7181 86.358 86.014 86.732 -1.4211E-14 77 24 4 0.919027802198657 0.00469349187145583 0.120815395917087 2.3576E-07 1 20134 101.2 75.88 1 36592000 11207 12491 10788 13815 7331.6 9243.8 8285.4 10895 12002 15056 10603 11807 10846 14030 7661.2 9518.6 8489.8 11318 11685 14429 1 1 1 1 1 1 1 1 1 1 3060 363 2694 2853 3406 3406 593 MFGGPGTASRPSSSR 15 Phospho (STY) _MFGGPGTASRPS(ph)SSR_ MFGGPGT(0.001)AS(0.013)RPS(0.577)S(0.404)S(0.004)R MFGGPGT(-30.5)AS(-16.32)RPS(1.55)S(-1.55)S(-21.2)R 0 0 1 1 P08670 P08670 P08670 VIM Vimentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 601.951171875 3 525.564223 1573.67084 40628.6960871226 0.63544 0.00033396 145340 76.388 145340 76.388 601.951930231268 48.305 0.55776 48.305 47.976 48.534 0 67 18 5 0.977331114610322 0.00227773038844335 0.0103195496992686 0.010248 1 11152 73.138 57.294 5 62415000 15378 18676 16602 18790 14596 15844 15090 18747 21911 3592.5 14556 17643 16624 19239 14944 16056 15523 18800 21330 3816.6 1 1 1 1 1 1 1 1 1 1 3061 336 2695 2854 3407 3407 552 MGANSLER 8 Phospho (STY) _MGANS(ph)LER_ MGANS(1)LER MGANS(113.99)LER 0 0 1 0 P52272 P52272 P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 593.779113769531 2 479.196617 956.378681 40364.2448384025 1.6382 0.000785 239110 114.58 239110 114.58 593.777917942884 41.738 0.62976 41.738 41.424 42.054 0 72 21 5 0.904632171682816 0.00854540587610059 0.159695625024745 0.001055 1 9502 113.99 68.83 1 164670000 41115 54959 39576 49257 85973 37337 86346 59547 54825 5563.7 38899 51886 40508 50732 84481 38246 87011 59037 55433 6617 1 1 1 1 1 1 1 1 1 1 3062 688 2696 2855 3408 3408 1158 MGLAMGGGGGASFDR 15 Oxidation (M),Phospho (STY) _M(ox)GLAMGGGGGAS(ph)FDR_ M(1)GLAMGGGGGASFDR MGLAMGGGGGAS(1)FDR M(60.82)GLAM(-60.82)GGGGGASFDR MGLAMGGGGGAS(149.6)FDR 0 1 1 0 P52272 P52272 P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.875122070313 2 740.291451 1478.56835 33523.4476073328 1.4897 0.0011028 154780 114.58 154780 114.58 854.872991115029 59.919 0.71527 59.919 59.566 60.282 0 75 24 4 0.97603371678024 0.00124031732976988 0.0133723996705951 8.2746E-07 1 14010 149.6 119.58 2 32962000 12687 13151 14811 13505 11360 14871 12235 14466 12168 59394 12013 12425 14751 13867 11744 14952 12411 16316 12009 56261 1 1 1 1 1 1 1 1 1 1 3063 688 2697 2856 3409 3409 89;90 1159 MGLAMGGGGGASFDR 15 Oxidation (M),Phospho (STY) _MGLAM(ox)GGGGGAS(ph)FDR_ MGLAM(1)GGGGGASFDR MGLAMGGGGGAS(1)FDR M(-36.54)GLAM(36.54)GGGGGASFDR MGLAMGGGGGAS(91.46)FDR 0 1 1 0 P52272 P52272 P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.873474121094 2 740.291451 1478.56835 33359.5168295406 1.2194 0.00090271 154780 114.58 154780 114.58 854.872708847573 60.571 0.58123 60.571 60.282 60.863 7.1054E-15 63 19 5 0.829658896528689 0.0029753745771449 0.0928637018585 0.0054264 1 14199 91.457 71.618 2 39163000 20794 26518 24574 23995 22502 27054 23554 22650 29542 62353 19691 25036 24504 24841 22978 27044 24090 24769 28895 59237 1 1 1 1 1 1 1 1 1 1 3064 688 2697 2856 3410 3410 89;90 1159 MGLAMGGGGGASFDR 15 Phospho (STY) _MGLAMGGGGGAS(ph)FDR_ MGLAMGGGGGAS(1)FDR MGLAMGGGGGAS(237.1)FDR 0 0 1 0 P52272 P52272 P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.875061035156 2 732.293994 1462.57343 33837.0297356783 2.1899 0.0016037 156470 114.58 156470 114.58 846.87406339132 74.06 1.1521 74.06 73.585 74.737 0 140 39 5 0.985058980998632 0.00149168782047635 0.034571946394194 6.4232E-16 1 17348 237.1 203.56 1 89288000 15139 13737 15171 15061 13175 13851 13354 14699 15671 65454 14326 12984 15251 15364 13493 14071 13648 16683 15364 61973 1 1 1 1 1 1 1 1 1 1 3065 688 2697 2857 3411 3411 1159 MGLSMER 7 Phospho (STY) _MGLS(ph)MER_ MGLS(1)MER MGLS(48.09)MER 0 0 1 0 P52272 P52272 P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 566.758972167969 2 452.176839 902.339125 41635.6846484995 1.7327 0.00078347 253400 114.58 253400 114.58 566.758146796254 59.395 1.2347 59.395 59.018 60.252 -7.1054E-15 126 42 6 0.790416488642725 0.00870040064617634 0.503089830115823 0.056338 1 13882 48.091 12.646 1 267660000 60686 52705 59629 52596 37005 55999 36337 51126 60195 1730.1 57421 49788 59825 54066 38901 55921 37673 51524 58382 2812.3 1 1 1 1 1 1 1 1 1 1 3066 688 2698 2858 3412 3412 1160 MGNLQNSPVNMNPPPLSK 18 Phospho (STY) _MGNLQNS(ph)PVNMNPPPLSK_ MGNLQNS(1)PVNMNPPPLSK MGNLQNS(81.14)PVNMNPPPLS(-81.14)K 0 0 1 0 Q15596 Q15596 Q15596 NCOA2 Nuclear receptor coactivator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 826.42529296875 3 673.312687 2016.91623 34721.7101381784 2.2818 0.0015363 226900 152.78 226900 152.78 826.422051826357 78.083 0.8609 78.083 77.69 78.551 0 79 29 4 0.939813618254765 0.00259505734560772 0.0266861786399612 1.3548E-06 1 18287 138.09 119.73 2 11971000 7510.5 6341 8162.4 6681.6 7345.4 9100.1 7272.1 8603.9 7917.7 12870 7109.3 5992.1 8171.5 6878.5 7502 9031.5 7423.6 9037.4 7785 12318 1 1 1 1 1 1 1 1 1 1 3067 1080 2699 2859 3413 3413 1872 MGPLGLDHMASSIER 15 Phospho (STY) _MGPLGLDHMASS(ph)IER_ MGPLGLDHMAS(0.186)S(0.814)IER MGPLGLDHMAS(-6.42)S(6.42)IER 0 0 1 0 P52272 P52272 P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.641052246094 3 565.252769 1692.73648 39408.8973318743 1.8738 0.0010592 135140 76.388 135140 76.389 641.640402711345 77.766 0.51941 77.766 77.545 78.064 0 32 17 2 0.817466321433373 0.00120928348154 0.00842342889133083 1.0868E-05 1 18240 136.43 108.32 2 11151000 5182.9 4467.9 3466 4182.3 5171.4 5429.3 6043.5 4287 5426.6 4102.3 4897.9 4219 3611.3 4331.7 5159 5379.9 6093 4468.1 5380.5 3962 1 1 1 1 1 1 1 1 1 1 3068 688 2700 2860 3414 3414 1161 MGPSGGEGMEPERRDSQDGSSYR 23 Oxidation (M),Phospho (STY) _M(ox)GPSGGEGMEPERRDS(ph)QDGSSYR_ M(0.994)GPSGGEGM(0.006)EPERRDSQDGSSYR MGPSGGEGMEPERRDS(0.956)QDGS(0.037)S(0.007)YR M(21.93)GPSGGEGM(-21.93)EPERRDSQDGSSYR MGPS(-60.76)GGEGMEPERRDS(14.13)QDGS(-14.13)S(-21.43)Y(-62.96)R 0 1 1 2 Q14847 Q14847 Q14847 LASP1 LIM and SH3 domain protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 937.731506347656 3 861.007491 2580.00064 32722.188502572 1.711 0.0014732 88719 76.388 88721 76.39 937.729351220267 32.338 0.76565 32.338 32.117 32.882 0 65 25 4 0.972772606748159 0.00183051824564089 0.0128401611600729 0.0037308 1 7222 90.37 67.675 10 13603000 3340.2 2343.5 3487.9 2201.9 10397 3640.2 12789 6277 2466.5 5553 3161.3 2213.1 3592.7 2292.6 10167 3628.1 12621 6361.4 2871.5 5374.1 1 1 1 1 1 1 1 1 1 1 3069 1031 2701 2861 3415 3415 135 1771 MGPSGGEGMEPERRDSQDGSSYR 23 Phospho (STY) _MGPSGGEGMEPERRDS(ph)QDGSSYR_ MGPSGGEGMEPERRDS(0.987)QDGS(0.004)S(0.009)YR MGPS(-128.44)GGEGMEPERRDS(20.5)QDGS(-23.55)S(-20.5)Y(-109.29)R 0 0 1 2 Q14847 Q14847 Q14847 LASP1 LIM and SH3 domain protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 932.400451660156 3 855.675853 2564.00573 33156.8075299732 1.5362 0.0013145 89272 76.388 89273 76.389 932.062904397781 40.166 0.4991 40.166 39.918 40.417 0 54 16 4 0.964491155019637 0.00102088550166054 0.00731210880800881 3.001E-12 1 9127 193.61 173.63 5 19698000 6305.4 4048.1 6841.1 3645 18855 6829 23681 12245 4449.1 5872.4 5968.5 3821.8 7013.9 3818.4 18475 6781.9 23347 12250 5205.6 5813 1 1 1 1 1 1 1 1 1 1 3070 1031 2701 2862 3416 3416 1771 MGQAPSQSLLPPAQDQPRSPVPSAFSDQSR 30 Oxidation (M),Phospho (STY) _M(ox)GQAPSQSLLPPAQDQPRS(ph)PVPSAFSDQSR_ M(1)GQAPSQSLLPPAQDQPRSPVPSAFSDQSR MGQAPSQSLLPPAQDQPRS(0.886)PVPS(0.07)AFS(0.034)DQS(0.01)R M(103.94)GQAPSQSLLPPAQDQPRSPVPSAFSDQSR MGQAPS(-74.61)QS(-56.14)LLPPAQDQPRS(11.01)PVPS(-11.01)AFS(-14.2)DQS(-19.58)R 0 1 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.428649902344 4 819.634228 3274.5078 32668.8321362041 2.048 0.0016786 69898 57.291 69900 57.292 877.425757422823 68.13 1.2963 68.13 67.675 68.971 0 208 43 6 0.935884959215311 0.00721343654150699 0.0891019833809489 0.00011275 1 15951 103.94 90.98 6 89956000 4968.1 6200.1 6009.4 7696.1 5222.4 5555.8 5080.9 6825.5 5835.4 14244 4705 5865.5 5981.4 7776.4 5344.9 5707.2 5199.4 7226.4 5725.8 13570 1 1 1 1 1 1 1 1 1 1 3071 2226 2702 2863 3417 3417 241 4058 MGQAPSQSLLPPAQDQPRSPVPSAFSDQSR 30 Oxidation (M),Phospho (STY) _M(ox)GQAPSQSLLPPAQDQPRS(ph)PVPSAFSDQSR_ M(1)GQAPSQSLLPPAQDQPRSPVPSAFSDQSR MGQAPSQSLLPPAQDQPRS(0.996)PVPS(0.004)AFSDQSR M(131.99)GQAPSQSLLPPAQDQPRSPVPSAFSDQSR MGQAPS(-83.28)QS(-77.71)LLPPAQDQPRS(24.26)PVPS(-24.26)AFS(-34.17)DQS(-50.27)R 0 1 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1169.23352050781 3 1092.50988 3274.5078 28565.675910858 1.9355 0.0021146 69921 76.389 69923 76.391 1169.56730438513 68.122 1.2972 68.122 67.736 69.033 0 178 43 6 0.444402881871685 9.78753888888841E-05 0.00271513416403997 3.0528E-05 1 16158 131.99 122.69 6 50045000 3288.7 3488.2 2365.4 3496.3 1087.7 2695.4 1055 3243.9 3820.3 8966 3108.5 3295.3 2419.2 3576.5 1181.4 2761.2 1151.2 3502.8 3652.2 8517.7 1 1 1 1 1 1 1 1 1 1 3072 2226 2702 2863 3418 3418 241 4058 MGQAPSQSLLPPAQDQPRSPVPSAFSDQSR 30 Phospho (STY) _MGQAPSQSLLPPAQDQPRS(ph)PVPSAFSDQSR_ MGQAPSQSLLPPAQDQPRS(0.868)PVPS(0.041)AFS(0.071)DQS(0.02)R MGQAPS(-85.78)QS(-64.56)LLPPAQDQPRS(10.88)PVPS(-13.26)AFS(-10.88)DQS(-16.29)R 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.176330566406 4 815.635499 3258.51289 33517.8850038555 1.9145 0.0015615 70240 57.29 70242 57.292 873.176794890747 74.08 1.6426 74.08 73.728 75.37 0 290 56 9 0.901752161787977 0.0069122262480706 0.120035016408318 4.1786E-06 2 17533 137.44 122.55 6 184840000 13871 15150 15002 18251 12567 15014 15249 16782 18308 25842 13130 14330 15016 18498 12937 15264 15477 17544 17934 24722 2 2 2 2 2 2 2 2 2 2 3073 2226 2702 2864 3419;3420 3420 4058 MGSATRK 7 Phospho (STY) _MGS(ph)ATRK_ MGS(0.5)AT(0.5)RK MGS(0)AT(0)RK 0 0 1 1 REV__Q8NET4 REV__Q8NET4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 430.232025146484 3 277.457856 829.351738 48527.7264144343 -0.055783 -1.5477E-05 550620 152.77 550620 152.77 430.232112354868 39.799 0.55426 39.799 39.48 40.034 0 39 18 3 0.892717568483138 0.00276302216961423 0.0967323512919495 0.048932 1 9019 41.029 41.029 2 16669000 34005 20959 31703 21226 17533 33059 17815 22849 21408 1192.3 32168 19801 31883 21968 18637 32483 18219 23351 20971 1651.5 1 1 1 1 1 1 1 1 1 1 + 3074 2340 2703 2865 3421 3421 4297;4862 MGSKSPGNTSQPPAFFSK 18 Oxidation (M),Phospho (STY) _M(ox)GS(ph)KSPGNTSQPPAFFSK_ M(1)GSKSPGNTSQPPAFFSK MGS(0.476)KS(0.476)PGNT(0.041)S(0.008)QPPAFFSK M(84.33)GSKSPGNTSQPPAFFSK MGS(0)KS(0)PGNT(-10.66)S(-17.86)QPPAFFS(-74.06)K 0 1 1 1 Q9Y618 Q9Y618 Q9Y618 NCOR2 Nuclear receptor corepressor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 884.456787109375 3 655.292169 1962.85468 33048.9804259962 2.4676 0.001617 349710 229.16 349710 229.16 884.788816501265 69.393 0.6956 69.393 69.033 69.728 0 67 23 4 0.912480845605712 0.00249020047246125 0.0338063118735345 0.011147 1 16284 84.327 66.08 5 16888000 14018 9733.3 12005 10002 8888.2 13706 11677 11782 9988 23572 13257 9196.2 12171 10313 9241.6 13594 11706 12603 9926.8 22468 1 1 1 1 1 1 1 1 1 1 3075 2306 2704 2866 3422 3422 249 4252;4253;4856 MGSKSPGNTSQPPAFFSK 18 Phospho (STY) _MGSKSPGNT(ph)SQPPAFFSK_ MGS(0.131)KS(0.249)PGNT(0.608)S(0.012)QPPAFFSK MGS(-6.67)KS(-3.87)PGNT(3.87)S(-16.9)QPPAFFS(-119.28)K 0 0 1 1 Q9Y618 Q9Y618 Q9Y618 NCOR2 Nuclear receptor corepressor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.459777832031 3 649.960531 1946.85976 33058.2315548568 1.9041 0.0012376 352580 229.16 352580 229.16 879.123682025253 75.653 0.60586 75.653 75.341 75.947 0 62 20 4 0.976465790556078 0.00363748516027633 0.0289595852823469 3.1605E-07 1 17774 158 118.35 5 31414000 23088 16898 25319 17772 17385 24689 14988 21264 21088 16662 21855 15968 25265 18305 18083 24426 15539 21964 20549 16182 1 1 1 1 1 1 1 1 1 1 3076 2306 2704 2867 3423 3423 4252;4253;4856 MGSLDSK 7 Phospho (STY) _MGS(ph)LDSK_ MGS(0.999)LDS(0.001)K MGS(29.37)LDS(-29.37)K 0 0 1 0 Q15596 Q15596 Q15596 NCOA2 Nuclear receptor coactivator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.325317382813 2 409.161712 816.30887 38318.0546475139 1.741 0.00071235 560080 229.16 560080 229.16 638.32472761405 55.543 0.61079 55.543 55.251 55.861 0 49 20 3 0.764307319512415 0.00100565456727419 0.0372873949212043 0.046966 1 12934 52.725 31.571 2 25729000 37051 20418 35255 20318 28993 35379 29997 28957 21379 11911 35053 19287 35528 21110 29798 34732 30250 29654 21460 11886 1 1 1 1 1 1 1 1 1 1 3077 1080 2705 2868 3424 3424 1873 MHRDSCPLDCK 11 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)M(ox)HRDS(ph)CPLDCK_ M(1)HRDSCPLDCK MHRDS(1)CPLDCK M(56.15)HRDSCPLDCK MHRDS(56.15)CPLDCK 1 1 1 1 P84103 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.915954589844 3 519.527904 1555.56188 40425.3017493327 1.5891 0.00082556 147030 76.387 147030 76.388 595.915537793855 38.015 0.52749 38.015 37.769 38.297 0 43 17 3 0.97364309589327 0.00135486929417894 0.0158215402273929 0.00017093 1 8621 56.147 21.26 1 14916000 11491 14111 12496 14101 16060 12974 15104 13506 13259 5900.4 10877 13330 12566 14461 16072 13072 15370 13704 13161 5868.5 1 1 1 1 1 1 1 1 1 1 3078 814 2706 2869 3425 3425 111 1301 MHRDSCPLDCK 11 Acetyl (Protein N-term),Phospho (STY) _(ac)MHRDS(ph)CPLDCK_ MHRDS(1)CPLDCK MHRDS(56.15)CPLDCK 1 0 1 1 P84103 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.584899902344 3 514.196266 1539.56697 40365.445574784 1.595 0.00082012 148560 76.388 148560 76.389 590.584317580373 44.629 0.8652 44.629 44.286 45.151 0 79 29 4 0.851329115852893 0.0035975891125561 0.0433982183375253 6.6014E-05 1 10255 56.147 26.819 1 38637000 17589 18840 19481 18941 21975 18916 20999 18704 21192 6893.4 16651 17798 19536 19441 22139 18972 21427 18977 20902 6923.9 1 1 1 1 1 1 1 1 1 1 3079 814 2706 2870 3426 3426 1301 MIFEGPNKLSPR 12 Oxidation (M),Phospho (STY) _M(ox)IFEGPNKLS(ph)PR_ M(1)IFEGPNKLSPR MIFEGPNKLS(1)PR M(67.71)IFEGPNKLSPR MIFEGPNKLS(67.71)PR 0 1 1 1 O94913 O94913 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.346557617188 3 495.570427 1483.68945 39284.731927698 1.9616 0.00097213 308280 152.78 308280 152.78 648.67998164658 66.84 0.57609 66.84 66.573 67.149 -1.4211E-14 65 19 4 0.93295358458469 0.00251516028954271 0.0497757802590943 0.019762 1 15718 67.707 38.608 1 17270000 8345.4 11999 7943 12166 7113.7 7948.2 6976 8692.1 11610 5322.9 7895.4 11336 8010.9 12414 7270.4 8174.5 7234.5 8850.4 11259 5213.4 1 1 1 1 1 1 1 1 1 1 3080 227 2707 2871 3427 3427 19 391 MIFEGPNKLSPR 12 Phospho (STY) _MIFEGPNKLS(ph)PR_ MIFEGPNKLS(1)PR MIFEGPNKLS(79.65)PR 0 0 1 1 O94913 O94913 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.348754882813 3 490.238788 1467.69454 39598.6169055414 2.2078 0.0010823 311630 152.78 311640 152.78 643.014415215897 77.359 0.72285 77.359 77.028 77.751 0 76 24 5 0.882981779904076 0.00290236969633846 0.0437765917583859 0.007187 1 18118 79.652 60.52 1 19720000 8407.1 12099 8312.9 11889 9077.2 7304.8 8959.4 10236 13430 8479.4 7955 11428 8385.2 12147 9169 7579.3 9247.9 10409 13062 8221.3 1 1 1 1 1 1 1 1 1 1 3081 227 2707 2872 3428 3428 391 MILIQDGSQNTNVDKPLR 18 Phospho (STY) _MILIQDGS(ph)QNTNVDKPLR_ MILIQDGS(0.991)QNT(0.009)NVDKPLR MILIQDGS(20.38)QNT(-20.38)NVDKPLR 0 0 1 1 Q92945 Q92945 Q92945 KHSRP Far upstream element-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.124633789063 3 708.016928 2121.02895 34339.1690532601 1.4387 0.0010186 215780 152.77 215780 152.77 861.12460125974 79.811 0.60043 79.811 79.474 80.075 0 49 20 4 0.613773229236749 0.00226837204890699 0.0228692506658304 3.4909E-05 1 18696 119.83 96.263 2 9579000 5938.5 6906.1 6960.5 7164.8 18856 7147.9 20080 11882 7876.2 13969 5623.2 6525.4 7098 7340.5 18438 7251.1 20047 12156 8289 13428 1 1 1 1 1 1 1 1 1 1 3082 1634 2708 2873 3429 3429 3020 MISTPSPK 8 Phospho (STY) _MISTPS(ph)PK_ MIS(0.015)T(0.129)PS(0.857)PK MIS(-17.69)T(-8.23)PS(8.23)PK 0 0 1 0 Q53F19 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.878051757813 2 470.714111 939.41367 38310.888440677 1.8208 0.00085706 486840 229.16 486840 229.16 699.877274381541 59.748 0.79987 59.748 59.365 60.165 0 70 27 4 0.914415474404847 0.00111745730087976 0.0383272069504727 0.0014734 1 13970 103.87 74.105 3 28746000 24179 22664 23849 21122 13298 26570 14136 19210 23400 10055 22878 21401 23906 21869 14138 26316 14602 19857 22696 9912.4 1 1 1 1 1 1 1 1 1 1 3083 1148 2709 2874 3430 3430 1996 MISTPSPKK 9 Phospho (STY) _MISTPS(ph)PKK_ MIS(0.15)T(0.124)PS(0.725)PKK MIS(-6.83)T(-7.66)PS(6.83)PKK 0 0 1 1 Q53F19 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 586.005432128906 3 356.843487 1067.50863 41216.575946751 1.9674 0.00070205 642190 229.16 642200 229.16 586.006194366623 56.361 0.8577 56.361 56.039 56.897 0 86 28 5 0.803895784910365 0.00168134908100502 0.0267398242127771 0.021206 1 13130 58.674 39.58 3 40563000 24445 22214 26733 24048 13934 22149 17227 23703 24836 5670.4 23139 20995 26637 24549 14949 22316 17586 23887 24183 5888 1 1 1 1 1 1 1 1 1 1 3084 1148 2710 2875 3431 3431 1996 MKQEGSAR 8 Phospho (STY) _MKQEGS(ph)AR_ MKQEGS(1)AR MKQEGS(82.17)AR 0 0 1 1 O43242 O43242 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 482.251495361328 3 329.475687 985.40523 44772.8653747686 0.97575 0.00032149 463690 152.78 463690 152.78 482.25112893759 29.458 0.84795 29.458 29.106 29.954 0 70 24 4 0.972792793981943 0.00543102613268699 0.0852933706571353 0.0071765 1 6542 82.171 48.942 1 103730000 29438 39550 29860 39137 28607 29160 30071 31791 39241 2795.5 27858 37359 30030 40050 29134 29712 30790 31871 38330 3368.1 1 1 1 1 1 1 1 1 1 1 3085 102 2711 2876 3432 3432 169 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 Oxidation (M),Phospho (STY) _M(ox)KS(ph)SSSVTTSETQPCTPSSSDYSDLQR_ M(1)KSSSSVTTSETQPCTPSSSDYSDLQR MKS(0.401)S(0.129)S(0.189)S(0.277)VT(0.003)TSETQPCTPSSSDYSDLQR M(125.95)KSSSSVTTSETQPCTPSSSDYSDLQR MKS(1.6)S(-4.92)S(-3.27)S(-1.6)VT(-21.12)T(-36.67)S(-45.23)ET(-53.8)QPCT(-88.51)PS(-95.82)S(-103.07)S(-109.68)DY(-120.47)S(-122.73)DLQR 0 1 1 1 P50552 P50552 P50552 VASP Vasodilator-stimulated phosphoprotein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.153503417969 4 766.320515 3061.25295 33454.8007809639 2.0944 0.001605 149520 114.58 149520 114.58 881.402214249774 49.773 0.43967 49.773 49.542 49.982 -7.1054E-15 80 14 7 0.924840351611127 0.00233767493625338 0.0244949484609441 4.8847E-05 1 11528 125.95 104.29 14 94944000 6541.2 5715 5456.9 5792.4 8532 6048.4 10073 8232.9 6128.9 5040.8 6185.6 5399.2 5597.7 5946.9 8494.8 6088 10072 8325.4 6214.7 4937 1 1 1 1 1 1 1 1 1 1 3086 665 2712 2877 3433 3433 87 1123;1124 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 Phospho (STY) _MKS(ph)SSSVTTSETQPCTPSSSDYSDLQR_ MKS(0.44)S(0.44)S(0.119)S(0.002)VTTSETQPCTPSSSDYSDLQR MKS(0)S(0)S(-5.67)S(-24.03)VT(-45.89)T(-58.81)S(-64.15)ET(-100.94)QPCT(-148.36)PS(-154.91)S(-162.27)S(-169.44)DY(-183.45)S(-189.56)DLQR 0 0 1 1 P50552 P50552 P50552 VASP Vasodilator-stimulated phosphoprotein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1169.53881835938 3 1016.09329 3045.25804 28955.8418131492 1.1149 0.0011329 150360 152.78 150360 152.78 1169.20342251509 55.662 0.52673 55.662 55.364 55.89 0 92 17 7 0.990256594047612 0.00672136647367668 0.0639384574594636 7.9602E-18 1 12959 228.72 211.71 14 255560000 3798.1 8879.8 4999.1 7524.9 17008 5047.7 25594 14645 10795 4264.8 3598.4 8380.8 5127.9 7769.2 16658 5298.5 25235 14447 11279 4354.8 1 1 1 1 1 1 1 1 1 1 3087 665 2712 2878 3434 3434 1123;1124 MLSQDAPTVK 10 Phospho (STY) _MLS(ph)QDAPTVK_ MLS(1)QDAPTVK MLS(39.4)QDAPT(-39.4)VK 0 0 1 0 O60934 O60934 O60934 NBN Nibrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.431945800781 2 585.267239 1168.51993 34954.0569463636 1.2298 0.00071979 391550 229.16 391550 229.16 814.430939702898 65.781 0.47467 65.781 65.544 66.019 0 26 15 2 0.700455999134998 0.000528377280460045 0.0175492336287815 0.0066236 1 15466 89.231 64.849 2 8499400 10448 9931.8 10181 10160 17138 10782 17050 12289 11533 11138 9885.1 9383.5 10352 10428 16975 10820 17208 12604 11613 10772 1 1 1 1 1 1 1 1 1 1 3088 162 2713 2879 3435 3435 280 MMKTWTLQK 9 2 Oxidation (M),2 Phospho (STY) _M(ox)M(ox)KT(ph)WT(ph)LQK_ M(1)M(1)KTWTLQK MMKT(1)WT(1)LQK M(42.56)M(42.56)KTWTLQK MMKT(42.56)WT(42.56)LQK 0 2 2 1 Q9UIQ6 Q9UIQ6 Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.680114746094 3 453.514364 1357.52126 37562.6096151372 2.7192 0.0012332 505310 229.16 505310 229.17 682.678478799778 79.342 0.45517 79.342 79.078 79.533 0 47 15 4 0.953744486819086 0.00243866587897253 0.0722911583710057 0.052417 1 18588 42.556 7.6682 1 17188000 12083 10478 11421 10333 16750 11889 16220 13442 10195 7030.2 11431 9897.5 11602 10643 16670 11880 16371 13635 10315 6930.9 1 1 1 1 1 1 1 1 1 1 3089 2159 2714 2880 3436 3436 226;227 4807;4808 MMNAYIGDFSITSQPLK 17 Oxidation (M),2 Phospho (STY) _M(ox)MNAYIGDFS(ph)IT(ph)SQPLK_ M(0.5)M(0.5)NAYIGDFSITSQPLK MMNAY(0.359)IGDFS(0.64)IT(0.512)S(0.488)QPLK M(0)M(0)NAYIGDFSITSQPLK MMNAY(-2.67)IGDFS(2.67)IT(0.33)S(-0.33)QPLK 0 1 2 0 REV__Q99700 REV__Q99700 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.066040039063 3 697.95712 2090.84953 33716.2408839085 0.85179 0.00059451 218890 152.77 218890 152.78 851.065818094788 101.48 0.22663 101.48 101.33 101.56 0 26 7 6 0.948371106677854 0.00672734143895261 0.189377147824579 0.056604 1 23868 45.696 23.059 12 64519000 11464 19650 13545 19328 15497 13775 15586 20712 21686 47125 10856 18560 13543 19776 15618 14231 16028 21926 21138 44853 1 1 1 1 1 1 1 1 1 1 + 3090 2346 2715 2881 3437 3437 4304 MNGVMFPGNSPSYTER 16 Phospho (STY) _MNGVMFPGNS(ph)PSYTER_ MNGVMFPGNS(0.881)PS(0.075)YT(0.044)ER MNGVMFPGNS(10.68)PS(-10.68)Y(-34.08)T(-13.06)ER 0 0 1 0 Q9NY27 Q9NY27 Q9NY27 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1048.97033691406 2 933.881162 1865.74777 30633.1801027344 1.5997 0.0014939 122700 114.58 122700 114.59 1048.46369821176 77.465 0.46695 77.465 77.254 77.721 -1.4211E-14 34 15 3 0.973011230055481 0.000773794768470252 0.0198374038148302 0.019948 1 18149 68.845 53.306 4 9434000 6483.7 3378.5 5669.5 3258.9 6255.5 6764.7 5984.1 6744.1 2956.3 30744 6132.2 3190.9 5762.3 3409.8 6306.8 6681.8 6021.4 7692 3045.4 29105 1 1 1 1 1 1 1 1 1 1 3091 2068 2716 2882 3438 3438 3736 MNLLPNIESPVTR 13 Acetyl (Protein N-term),Phospho (STY) _(ac)MNLLPNIES(ph)PVTR_ MNLLPNIES(0.952)PVT(0.048)R MNLLPNIES(12.97)PVT(-12.97)R 1 0 1 0 P17980 P17980 P17980 PSMC3 26S protease regulatory subunit 6A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 803.387268066406 2 803.388948 1604.76334 34905.0983158188 1.3459 0.0010813 -1.0946 -0.00087942 0.25123 0.00020183 803.387433579568 102.08 0.14677 102.08 102.01 102.16 0 9 4 3 0.972426936890904 0.000414101688067099 0.0127722716372452 6.5263E-05 1 24056 98.253 81.72 2 9604800 4822.1 5013.8 4920.4 4867.4 4617.5 4417 5310 5045.9 4382 28824 4563.3 4735.5 4946.5 4999.4 4712.6 4509.6 5346.5 5905.6 4363.1 27258 1 1 1 1 1 1 1 1 1 1 3092 423 2717 2883 3439 3439 682 MNSLTFKK 8 Phospho (STY) _MNS(ph)LTFKK_ MNS(0.999)LT(0.001)FKK MNS(29.9)LT(-29.9)FKK 0 0 1 1 Q96N67 Q96N67 Q96N67 DOCK7 Dedicator of cytokinesis protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.331115722656 3 350.168082 1047.48242 41455.3743974904 1.989 0.00069647 654440 229.16 654440 229.16 579.33109014836 70.123 0.5414 70.123 69.848 70.389 0 50 18 4 0.95391556150157 0.00424040865886779 0.0581953092045948 0.011342 1 16442 74.46 45.373 2 21197000 11554 16448 9590.1 16001 18460 9847.5 18601 16215 16763 1954.8 10926 15536 9878.5 16357 18209 10229 18877 16077 16618 2216 1 1 1 1 1 1 1 1 1 1 3093 1720 2718 2884 3440 3440 3165 MNSSFSVKPFEK 12 Phospho (STY) _MNS(ph)SFSVKPFEK_ MNS(0.97)S(0.03)FS(0.001)VKPFEK MNS(15.12)S(-15.12)FS(-32.73)VKPFEK 0 0 1 1 Q7Z401 Q7Z401 Q7Z401 DENND4A C-myc promoter-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.38623046875 3 494.222916 1479.64692 37442.5500684868 2.8075 0.0013876 463680 229.16 463690 229.16 723.720416339777 81.823 0.52284 81.823 81.593 82.116 0 60 17 4 0.903627248575802 0.00453826583891087 0.115207815981259 0.0001482 1 19140 101.92 83.785 3 23297000 24962 10064 25410 10327 12354 26268 15424 17085 10742 9931.5 23622 9509 25407 10844 13347 25522 15424 17792 10798 9747.1 1 1 1 1 1 1 1 1 1 1 3094 1333 2719 2885 3441 3441 2403 MNTAPSRPSPTR 12 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)M(ox)NTAPSRPS(ph)PTR_ M(1)NTAPSRPSPTR MNTAPS(0.189)RPS(0.804)PT(0.007)R M(99.5)NTAPSRPSPTR MNT(-52.85)APS(-6.29)RPS(6.29)PT(-20.75)R 1 1 1 1 Q9HCD5 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.819885253906 2 726.81869 1451.62283 36076.8792213623 1.5362 0.0011166 -0.093456 -6.7926E-05 1.4428 0.0010486 726.818880033847 24.847 0.46512 24.847 24.569 25.034 0 53 15 5 0.778831773685945 0.005538898278037 0.147221612405709 5.1214E-07 1 5547 99.498 86.12 4 20290000 1095.2 650.7 359.54 441.43 1131.3 591.51 1161.5 864.15 407.08 2075.1 1033.6 613.5 413.83 468.43 1102.2 593.53 1160.2 918.77 433.66 1973.9 1 1 1 1 1 1 1 1 1 1 3095 1985 2720 2886 3442 3442 210 3606 MPCESSPPESADTPTSTR 18 Phospho (STY) _MPCESS(ph)PPESADTPTSTR_ MPCES(0.067)S(0.933)PPESADTPTSTR MPCES(-11.46)S(11.46)PPES(-36)ADT(-52.02)PT(-64.78)S(-67.98)T(-67.98)R 0 0 1 0 P46013 P46013 P46013 MKI67 Antigen KI-67 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.658142089844 3 677.267472 2028.78059 NaN NaN NaN NaN NaN NaN NaN NaN 46.982 1 46.982 46.482 47.482 0 NaN NaN NaN 0.0042464 1 10858 95.622 83.772 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3096 603 2722 2887 3443 3443 990 MPDEPEEPVVAVSSPAVPPPTK 22 Phospho (STY) _MPDEPEEPVVAVS(ph)SPAVPPPTK_ MPDEPEEPVVAVS(0.573)S(0.427)PAVPPPTK MPDEPEEPVVAVS(1.29)S(-1.29)PAVPPPT(-61.34)K 0 0 1 0 O60885 O60885 O60885 BRD4 Bromodomain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.150024414063 3 785.039287 2352.09603 32778.7480315534 2.0687 0.001624 194610 152.78 194610 152.78 938.48436540198 78.101 0.7386 78.101 77.751 78.49 0 66 25 3 0.985400802728476 0.0017862510832655 0.0287940900756437 4.9146E-05 1 18325 112.23 99.671 3 10606000 3593.4 4419.3 4480.1 3264.6 4418 3871.9 3367.8 4970.1 4835.7 16665 3403.6 4168.2 4457.5 3432.2 4473.6 3899 3518.8 5444.9 4709.1 15808 1 1 1 1 1 1 1 1 1 1 3097 161 2723 2888 3444 3444 278 MPFQTSPGGK 10 Phospho (STY) _MPFQTS(ph)PGGK_ MPFQT(0.438)S(0.562)PGGK MPFQT(-1.09)S(1.09)PGGK 0 0 1 0 P51608 P51608 P51608 MECP2 Methyl-CpG-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.938171386719 3 377.163109 1128.4675 43918.4793605158 1.2676 0.00047809 405060 152.78 405070 152.78 529.93818565106 71.282 0.51749 71.282 71.032 71.549 0 38 17 3 0.912793253180658 0.00119567410570764 0.0321039608162262 0.024361 1 16732 54.343 26.138 2 7841300 3229 6659.6 3604.3 6891.5 4436.2 4043.6 3592.7 5575 6829.4 2338.4 3056.9 6292.4 3616.3 7016.1 4443.9 4203.8 3786.2 5603.3 6601.3 2330.9 1 1 1 1 1 1 1 1 1 1 3098 680 2724 2889 3445 3445 1139 MPLPSPTESR 10 Phospho (STY) _MPLPS(ph)PTESR_ MPLPS(0.765)PT(0.233)ES(0.003)R MPLPS(5.17)PT(-5.17)ES(-24.84)R 0 0 1 0 O75665 O75665 O75665 OFD1 Oral-facial-digital syndrome 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.345825195313 2 597.764864 1193.51517 36582.8781037148 1.4054 0.00084011 191680 114.58 191680 114.58 712.34580721575 62.498 0.55283 62.498 62.209 62.761 0 44 18 3 0.795314549683471 0.00203435478953345 0.0637079698125418 0.0047325 1 14673 92.943 57.279 3 21699000 22352 18895 21094 18078 12954 22048 14456 18227 19560 9429.4 21146 17845 21216 18675 13652 21892 14783 18715 19084 9300.7 1 1 1 1 1 1 1 1 1 1 3099 196 2725 2890 3446 3446 343 MPQPSSGRESPRH 13 Oxidation (M),Phospho (STY) _M(ox)PQPSSGRES(ph)PRH_ M(1)PQPSSGRESPRH MPQPS(0.011)S(0.035)GRES(0.954)PRH M(53.26)PQPSSGRESPRH MPQPS(-19.36)S(-14.37)GRES(14.37)PRH 0 1 1 2 P56181 P56181 P56181 NDUFV3 NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.612731933594 3 521.22409 1560.65044 40746.3274687313 1.7521 0.00091321 146550 76.387 146550 76.388 597.611755539939 20.994 0.3737 20.994 20.74 21.114 0 31 12 5 0.889440474854445 0.0106146503375405 0.14168619396899 0.025061 1 4757 53.255 38.569 3 5036500 979.74 1901.9 1409.4 925.36 1593.1 1112.5 1885.1 2227.6 1267.6 1060.4 928.69 1791.1 1397.3 1012.7 1609.4 1122.7 1887.9 2223.2 1276.9 1050 1 1 1 1 1 1 1 1 1 1 3100 727 2726 2891 3447 3447 95 1208 MPTTPVK 7 Phospho (STY) _MPTT(ph)PVK_ MPT(0.064)T(0.936)PVK MPT(-11.63)T(11.63)PVK 0 0 1 0 Q8WUA7 Q8WUA7 Q8WUA7 TBC1D22A TBC1 domain family member 22A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.361755371094 2 427.198097 852.381641 40719.2553955917 1.6563 0.00070756 536430 229.16 536430 229.16 656.360761077068 54.891 0.37537 54.891 54.669 55.044 0 27 12 3 0.757746565052638 0.000884430999038198 0.0136690683486094 0.021183 1 12797 76.345 36.344 2 15864000 32417 17822 30477 18782 18036 34765 14974 22259 19940 8931.4 30668 16842 30642 19483 18999 33993 15525 23081 19465 8925.2 1 1 1 1 1 1 1 1 1 1 3101 1563 2727 2892 3448 3448 4704 MQASIEK 7 Phospho (STY) _MQAS(ph)IEK_ MQAS(1)IEK MQAS(114.89)IEK 0 0 1 0 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.854064941406 2 443.690636 885.36672 37592.2925411319 1.4555 0.00064581 516490 229.16 516490 229.16 672.853547484639 53.19 0.64666 53.19 53.009 53.656 0 72 22 5 0.901728418228844 0.0073717702027169 0.0622760160391184 0.0015367 1 12390 114.89 56.934 1 349550000 207310 333120 213200 320870 127320 218360 128830 226580 347590 5627.6 196190 314620 213290 328560 134500 223560 137050 227130 333690 10543 1 1 1 1 1 1 1 1 1 1 3102 315 2728 2893 3449 3449 522 MQDAENVAVPEAAEER 16 Acetyl (Protein N-term) _(ac)MQDAENVAVPEAAEER_ 1 0 0 0 P55884 P55884 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.408508300781 2 900.907073 1799.79959 31965.5274102438 1.3537 0.0012195 -0.72931 -0.00065704 0.62434 0.00056247 900.90647898018 64.256 0.44545 64.256 64.062 64.508 0 33 14 3 0.820947156886178 0.000781908474042236 0.00845697212788103 4.2508E-05 1 15094 73.466 67.226 1 15462000 6570.4 7053.3 6452.8 7681.1 6882.7 6036.5 9080.5 7189.1 6839.3 12204 6216.8 6666.6 6513.8 7822 6988.2 6161.5 9076.2 7534.3 6843.4 11658 1 1 1 1 1 1 1 1 1 1 3103 725 2729 2894 3450 3450 MQFSFEGPEK 10 Phospho (STY) _MQFS(ph)FEGPEK_ MQFS(1)FEGPEK MQFS(82.07)FEGPEK 0 0 1 0 Q6DN90 Q6DN90 Q6DN90 IQSEC1 IQ motif and SEC7 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.283935546875 3 427.173673 1278.49919 42000.7638918138 1.6575 0.00070803 357640 152.78 357640 152.78 579.94886192483 84.613 0.53915 84.613 84.329 84.868 0 52 18 4 0.962505989525261 0.00255039593302502 0.0531454399752211 0.0061459 1 19756 82.069 67.862 1 9777000 2847.4 6663.2 3557.9 7652.7 3973.8 3646.3 4143.5 4448.9 9039.8 4521.6 2697 6300.1 3547.2 7732.8 4015.1 3852.3 4343.7 4567.7 8711.9 4360.6 1 1 1 1 1 1 1 1 1 1 3104 1236 2730 2895 3451 3451 2178 MQMLEDEDDLAYAETEK 17 Unmodified _MQMLEDEDDLAYAETEK_ 0 0 0 0 Q14204 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.405151367188 3 677.623823 2029.84964 35154.0353079202 1.0021 0.00067905 225460 152.78 225460 152.78 830.402728121845 87.939 0.74523 87.939 87.734 88.479 1.4211E-14 64 25 4 0.77494789446358 0.000896264274252968 0.0170915632175139 0.046394 1 20577 46.131 23.253 1 19617000 5633.5 7523.8 7012.1 7858 7741.6 6304.3 7896.3 8104.4 7892.6 20145 5335.9 7109.3 6990.8 8023 7815.3 6449 8030.2 8666.6 7787.8 19157 1 1 1 1 1 1 1 1 1 1 3105 1001 2731 2896 3452 3452 MQNNSSPSISPNTSFTSDGSPSPLGGIK 28 Oxidation (M),Phospho (STY) _M(ox)QNNSSPSIS(ph)PNTSFTSDGSPSPLGGIK_ M(1)QNNSSPSISPNTSFTSDGSPSPLGGIK MQNNSSPS(0.024)IS(0.809)PNT(0.16)S(0.007)FTSDGSPSPLGGIK M(141.65)QNNSSPSISPNTSFTSDGSPSPLGGIK MQNNS(-44.31)S(-37.33)PS(-15.32)IS(7.03)PNT(-7.03)S(-20.86)FT(-35.57)S(-43.28)DGS(-64.22)PS(-76.95)PLGGIK 0 1 1 0 Q9H0D6 Q9H0D6 Q9H0D6 XRN2 5-3 exoribonuclease 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1121.53869628906 3 968.430342 2902.2692 28746.7667561683 0.54493 0.00052772 157760 152.78 157760 152.78 1121.53874421491 81.101 0.66853 81.101 80.638 81.307 0 26 22 2 0.896631972905855 0.00083790715896384 0.0135120668937959 2.1792E-07 1 18951 141.65 126.95 10 13103000 4438.8 4204.6 5098.1 3548.8 4587.7 4459.6 5275.2 5368.9 3683.6 20660 4202.7 3968.2 5090.7 3698.5 4694 4479.8 5293.1 5972.7 3702.2 19578 1 1 1 1 1 1 1 1 1 1 3106 1902 2732 2897 3453 3453 206 3457 MQNNSSPSISPNTSFTSDGSPSPLGGIK 28 Phospho (STY) _MQNNSSPSIS(ph)PNTSFTSDGSPSPLGGIK_ MQNNS(0.001)S(0.002)PS(0.012)IS(0.985)PNTSFTSDGSPSPLGGIK MQNNS(-32.49)S(-26.56)PS(-19.13)IS(19.13)PNT(-33.41)S(-48.23)FT(-84.34)S(-104.97)DGS(-124.32)PS(-136.13)PLGGIK 0 0 1 0 Q9H0D6 Q9H0D6 Q9H0D6 XRN2 5-3 exoribonuclease 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1116.21020507813 3 963.098704 2886.27428 30162.8845828479 0.87069 0.00083856 158630 152.78 158630 152.78 1116.20898674108 84.893 0.54972 84.893 84.663 85.213 0 59 18 4 0.974946893877396 0.00370065180427812 0.0833630799930289 1.3399E-12 1 19823 209.36 193.75 10 11060000 3972 4107 4259 3526.2 5451.2 4699.5 6369.8 6063.6 4716.1 23314 3759.6 3876.4 4288.4 3674.9 5473 4719.2 6394.6 6731.8 4723.5 22093 1 1 1 1 1 1 1 1 1 1 3107 1902 2732 2898 3454 3454 3457 MQPSEQPR 8 Unmodified _MQPSEQPR_ 0 0 0 0 REV__Q8N1F8 REV__Q8N1F8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 601.313415527344 2 486.732009 971.449465 40931.9761251204 1.8897 0.0009198 235410 114.58 235410 114.58 601.3122715768 22.357 0.20342 22.357 22.226 22.43 0 12 6 2 0.992906615536689 0.00685317921089862 0.17013615769334 0.04973 1 5034 76.035 32.988 1 10282000 535.21 291.31 395 528.97 318.53 0 383.88 852.75 1140.6 1302.5 505.92 276.55 404.99 520.12 329.4 0 408.34 861.57 1093.3 1246.2 1 1 1 1 1 0 1 1 1 1 + 3108 2339 2733 2899 3455 3455 MQQNIQELEEQLEEEESAR 19 Unmodified _MQQNIQELEEQLEEEESAR_ 0 0 0 0 P35579 P35579 P35579 MYH9 Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.744140625 3 778.356904 2332.04888 33383.1129134839 1.5576 0.0012124 98139 76.387 98141 76.388 855.078405054271 98.893 0.43335 98.893 98.662 99.095 0 41 14 5 0.928484718543235 0.00534220925882108 0.223832670726664 3.7862E-23 1 22935 276.03 261.11 1 36044000 3892 3312.1 4750.8 3106.8 3780.2 3904.6 3555.2 4409.6 3610.4 21102 3686 3127.7 4722.1 3215.4 3890.3 3924.2 3631.2 5039.4 3560 19972 1 1 1 1 1 1 1 1 1 1 3109 547 2734 2900 3456 3456 MQSLQLDCVAVPSSR 15 Phospho (STY) _MQS(ph)LQLDCVAVPSSR_ MQS(1)LQLDCVAVPSSR MQS(52.49)LQLDCVAVPS(-54.51)S(-52.49)R 0 0 1 0 Q13546 Q13546 Q13546 RIPK1 Receptor-interacting serine/threonine-protein kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1000.98370361328 2 885.899354 1769.78416 32490.4642372755 1.5057 0.0013339 129340 114.58 129340 114.58 1000.48177376697 80.223 0.41573 80.223 79.989 80.404 -1.4211E-14 30 13 3 0.890827846542032 0.000587412444252823 0.00998604301963825 6.3942E-05 1 18801 130.27 108.97 3 11698000 4452.7 5511.9 6471.3 5342.9 8087.4 5164.8 8337.7 7163.6 5632.9 24409 4220.9 5205.9 6420.5 5493.4 8112.7 5255.9 8401 7843.6 5672.7 23149 1 1 1 1 1 1 1 1 1 1 3110 966 2735 2901 3457 3457 1637 MQSLSLNK 8 Phospho (STY) _MQSLS(ph)LNK_ MQS(0.002)LS(0.998)LNK MQS(-26.75)LS(26.75)LNK 0 0 1 0 Q13442 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.894348144531 2 500.730293 999.446032 37171.7562838523 1.8261 0.00091439 457660 229.16 457660 229.16 729.892994911739 68.753 0.47618 68.753 68.527 69.003 0 35 15 3 0.980007554488744 0.000710569569870252 0.017270975465607 0.0051702 1 16154 94.82 50.51 2 14547000 21052 24715 20923 25091 21496 24309 21863 24846 26393 9314.4 19921 23350 21083 25727 21790 24425 22361 25182 25850 9345.7 1 1 1 1 1 1 1 1 1 1 3111 956 2736 2902 3458 3458 1606;1607 MQSLSLNK 8 Phospho (STY) _MQS(ph)LSLNK_ MQS(0.955)LS(0.045)LNK MQS(13.31)LS(-13.31)LNK 0 0 1 0 Q13442 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.89453125 2 500.730293 999.446032 37001.0174929714 1.7448 0.00087367 457660 229.16 457660 229.16 729.893528554181 70.421 0.44201 70.421 70.185 70.627 0 32 14 3 0.981423735998603 0.00120110601082767 0.00648779393995213 0.012332 1 16512 81.799 39.588 2 28392000 16540 12697 15375 13065 45109 16662 49166 26597 13190 10424 15646 11996 15920 13450 44045 16684 48867 26607 14541 10431 1 1 1 1 1 1 1 1 1 1 3112 956 2736 2902 3459 3459 1606;1607 MREDYDSVEQDGDEPGPQR 19 Unmodified _MREDYDSVEQDGDEPGPQR_ 0 0 0 1 Q9Y5S9 Q9Y5S9 Q9Y5S9 RBM8A RNA-binding protein 8A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.368591308594 3 741.646678 2221.9182 34529.0424544444 1.9019 0.0014105 103000 76.387 103000 76.389 818.368442953723 43.979 0.49986 43.979 43.728 44.228 -7.1054E-15 66 16 5 0.847346555567844 0.00384260340339969 0.0583553971153265 7.5552E-31 1 10073 290.94 259.87 1 59037000 18821 19340 19092 15810 21085 18975 23243 23818 18696 7237.8 17810 18250 19237 16500 21306 18953 23432 23922 18640 7366.5 1 1 1 1 1 1 1 1 1 1 3113 2300 2737 2903 3460 3460 MRKETPPPLVPPAAR 15 Phospho (STY) _MRKET(ph)PPPLVPPAAR_ MRKET(1)PPPLVPPAAR MRKET(101.49)PPPLVPPAAR 0 0 1 2 Q9BQA1 Q9BQA1 Q9BQA1 WDR77 Methylosome protein 50 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 550.313232421875 4 435.731117 1738.89536 43006.2486121592 1.4837 0.00064649 262960 114.58 262970 114.58 550.563350307304 58.267 1.024 58.267 57.732 58.756 0 85 34 4 0.651449402230616 0.000817306350621006 0.00787299429162845 0.00021068 1 13624 101.49 82.762 1 14784000 5744.5 7288.7 5468.4 8076 4522.5 5231.3 4814.8 6064.4 7387.8 1947.4 5434.8 6889.8 5511.2 8198.5 4651.8 5384.7 4957.4 6109.4 7180.4 1974.1 1 1 1 1 1 1 1 1 1 1 3114 1803 2738 2904 3461 3461 4750 MSADMSEIEAR 11 Phospho (STY) _MS(ph)ADMSEIEAR_ MS(0.997)ADMS(0.003)EIEAR MS(25.85)ADMS(-25.85)EIEAR 0 0 1 0 O43318 O43318 O43318 MAP3K7 Mitogen-activated protein kinase kinase kinase 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.836059570313 2 660.254003 1318.49345 35669.9473096813 2.1337 0.0014088 173540 114.58 173540 114.58 774.834189358883 68.062 0.47617 68.062 67.824 68.3 1.4211E-14 31 15 3 0.54225545545735 0.001293013631932 0.0840503975105772 0.017404 1 15996 68.83 52.887 2 9583100 15471 12884 14426 16029 24412 15086 24965 19206 16032 22246 14635 12189 14710 16251 24183 15258 25142 19775 16198 21391 1 1 1 1 1 1 1 1 1 1 3115 106 2739 2905 3462 3462 176 MSCFSRPSMSPTPLDR 16 Phospho (STY) _MSCFSRPSMS(ph)PTPLDR_ MSCFSRPSMS(0.985)PT(0.014)PLDR MS(-94.63)CFS(-73.03)RPS(-39.89)MS(18.34)PT(-18.34)PLDR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.997497558594 3 650.275356 1947.80424 36358.3816645007 2.4559 0.001597 117470 76.387 117470 76.388 726.996672646027 68.291 0.87723 68.291 67.824 68.701 0 141 29 6 0.964440160618704 0.0200764729876109 0.570174075438636 2.9464E-08 1 16014 174.2 138.87 5 110460000 32743 28949 33875 28312 18869 34438 17635 27743 28215 9620 30988 27343 33859 29207 20027 34180 18300 28378 27391 9700.5 1 1 1 1 1 1 1 1 1 1 3116 2226 2740 2906 3463 3463 4059 MSDTGSPGMQR 11 Phospho (STY) _MSDTGS(ph)PGMQR_ MSDT(0.011)GS(0.989)PGMQR MS(-35.07)DT(-19.53)GS(19.53)PGMQR 0 0 1 0 O60333 O60333 O60333 KIF1B Kinesin-like protein KIF1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.315490722656 2 623.733238 1245.45192 36371.5609570523 1.2943 0.00080731 183700 114.58 183700 114.58 738.314531420347 36.817 0.41602 36.817 36.628 37.044 -7.1054E-15 38 13 4 0.978696323197362 0.000877923260835452 0.00953044835535253 2.3455E-07 1 8297 169.82 145.53 3 15361000 10916 21652 12705 19268 21092 13174 21582 18255 20399 4580.8 10336 20441 12794 19831 20915 13549 21913 18252 20178 4735.8 1 1 1 1 1 1 1 1 1 1 3117 143 2741 2907 3464 3464 243 MSGFIYQGK 9 Phospho (STY) _MS(ph)GFIYQGK_ MS(0.888)GFIY(0.112)QGK MS(9.01)GFIY(-9.01)QGK 0 0 1 0 Q15052;Q14155 Q15052;Q14155 Q15052 ARHGEF6;ARHGEF7 Rho guanine nucleotide exchange factor 6;Rho guanine nucleotide exchange factor 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.403137207031 2 555.738118 1109.46168 35519.6474657346 1.7384 0.00096607 412360 229.16 412360 229.16 784.901311245396 84.311 0.85473 84.311 83.985 84.84 0 111 29 6 0.974254191106205 0.00300519154683545 0.0795962453457991 0.00047749 1 19665 112.85 98.331 2 164810000 43179 8123.1 46202 7711 39731 44515 44903 35458 8910 24043 40870 7671.2 46279 8533.9 40740 42909 44474 36643 10318 23460 1 1 1 1 1 1 1 1 1 1 3118 1051;991 2742 2908 3465 3465 1676 MSGGSTMSSGGGNTNNSNSK 20 Phospho (STY) _MS(ph)GGSTMSSGGGNTNNSNSK_ MS(1)GGSTMSSGGGNTNNSNSK MS(37.35)GGS(-37.35)T(-44.7)MS(-104.43)S(-144.91)GGGNT(-239.55)NNS(-296.13)NS(-308.78)K 0 0 1 0 Q86U70 Q86U70 Q86U70 LDB1 LIM domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.022888183594 3 652.247071 1953.71938 35420.7182688152 1.8432 0.0012022 234230 152.77 234230 152.78 805.356282140543 39.4 0.37225 39.4 39.197 39.569 0 35 12 4 0.985290028091658 0.0017721784227242 0.0141402682473054 3.7867E-32 1 8946 319.31 304.34 8 17158000 6975.5 9801.8 7579.6 8371.2 13044 5676.4 14956 10959 10603 3428.2 6602.9 9251.3 7668 8639.3 12937 5882.7 15013 10891 10646 3481.7 1 1 1 1 1 1 1 1 1 1 3119 1366 2743 2909 3466 3466 2476;2477;4644 MSMTGAGKSPPSVQSLAMR 19 Phospho (STY) _MSMTGAGKS(ph)PPSVQSLAMR_ MSMTGAGKS(0.987)PPS(0.01)VQS(0.002)LAMR MS(-38.23)MT(-35.28)GAGKS(19.84)PPS(-19.84)VQS(-26.17)LAMR 0 0 1 1 Q96KQ7 Q96KQ7 Q96KQ7 EHMT2 Histone-lysine N-methyltransferase EHMT2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.421875 3 672.641928 2014.90395 33332.6990565721 2.0468 0.0013768 227130 152.77 227130 152.78 825.751639547704 75.786 0.91733 75.786 75.03 75.947 0 89 31 4 0.977053347631642 0.00249436151594434 0.108682066058732 0.0056605 1 17716 86.084 69.59 5 20610000 9258.6 11461 11275 9444.4 8650.9 12666 10560 11119 10552 14348 8768.6 10815 11209 9872 8960.9 12560 10657 11645 10412 13768 1 1 1 1 1 1 1 1 1 1 3120 1709 2744 2910 3467 3467 3149 MSPGVAGSPR 10 Phospho (STY) _MS(ph)PGVAGSPR_ MS(1)PGVAGSPR MS(35.79)PGVAGS(-35.79)PR 0 0 1 0 Q15596 Q15596 Q15596 NCOA2 Nuclear receptor coactivator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 634.303955078125 2 519.725542 1037.43653 40944.543459861 1.8793 0.0009767 220470 114.58 220470 114.58 634.306852956276 42.493 0.37441 42.493 42.223 42.598 0 28 12 3 0.41549150037731 0.000576061049780806 0.0365411220481113 0.019037 1 9694 64.86 44.16 2 8659400 23863 17080 24762 19130 22408 25079 20503 20750 19161 5239.5 22584 16147 24850 19613 22850 24828 20925 21139 18963 5413.8 1 1 1 1 1 1 1 1 1 1 3121 1080 2745 2911 3468 3468 1874 MSPNETLFLESTNK 14 Phospho (STY) _MSPNETLFLES(ph)TNK_ MSPNETLFLES(0.879)T(0.121)NK MS(-84.39)PNET(-82.83)LFLES(8.63)T(-8.63)NK 0 0 1 0 Q9HB90;Q9NQL2 Q9HB90 Q9HB90 RRAGC;RRAGD Ras-related GTP-binding protein C;Ras-related GTP-binding protein D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.027160644531 3 564.251311 1689.7321 37493.132103281 1.6577 0.00093536 270760 152.77 270760 152.77 717.3602052851 85.93 0.48188 85.93 85.59 86.072 -1.4211E-14 43 16 4 0.882659893639897 0.00178490655451979 0.0592865566724069 0.00015582 1 20064 107.72 89.828 4 7451800 3877.7 5579.8 4776.8 5821.5 5974.9 4046.5 6793.6 6170.7 6519.1 11364 3672.7 5272.4 4774.5 5934.1 6003.9 4183.3 6868.4 6449.8 6444.1 10843 1 1 1 1 1 1 1 1 1 1 3122 1978 2746 2912 3469 3469 3595 MSPQEGQK 8 Oxidation (M),Phospho (STY) _M(ox)S(ph)PQEGQK_ M(1)SPQEGQK MS(1)PQEGQK M(78.14)SPQEGQK MS(78.14)PQEGQK 0 1 1 0 Q8IYM9 Q8IYM9 Q8IYM9 TRIM22 E3 ubiquitin-protein ligase TRIM22 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.858581542969 2 500.693907 999.373261 36601.8085529358 2.6142 0.0013089 457690 229.16 457700 229.17 729.857973744611 28.598 0.48675 28.598 28.236 28.723 -3.5527E-15 27 16 3 0.981600790442799 0.000900536679606717 0.0162034968150654 0.012447 1 6364 78.136 65.93 1 4321000 13904 3495.6 14124 4948.4 8572.5 14400 8529.1 9661.5 4686.2 3562.9 13157 3310.5 14142 5144.1 9023 13960 8578.7 9982.1 4786.8 3578.5 1 1 1 1 1 1 1 1 1 1 3123 1438 2747 2913 3470 3470 173 2666 MSPQEGQK 8 Phospho (STY) _MS(ph)PQEGQK_ MS(1)PQEGQK MS(132.62)PQEGQK 0 0 1 0 Q8IYM9 Q8IYM9 Q8IYM9 TRIM22 E3 ubiquitin-protein ligase TRIM22 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.860595703125 2 492.69645 983.378347 36384.7815500117 2.3731 0.0011692 465120 229.16 465120 229.16 721.859294575256 39.349 0.60767 39.349 38.991 39.599 0 29 19 2 0.919858882735281 0.00198605699461072 0.0347818991598455 0.00028452 1 8932 132.62 95.433 1 21273000 42116 7054.5 41874 9657.3 21664 43048 24334 23958 7782.8 5751.2 39852 6679 41937 10293 23200 41430 24189 24945 8381.3 5969.9 1 1 1 1 1 1 1 1 1 1 3124 1438 2747 2914 3471 3471 2666 MSPSKSPFLPSMK 13 Oxidation (M),Phospho (STY) _M(ox)S(ph)PSKSPFLPSMK_ M(1)SPSKSPFLPSMK MS(0.995)PS(0.004)KSPFLPSMK M(93.34)SPSKSPFLPSM(-93.34)K MS(23.61)PS(-23.61)KS(-36.58)PFLPS(-75.38)MK 0 1 1 1 Q8NFD5 Q8NFD5 Q8NFD5 ARID1B AT-rich interactive domain-containing protein 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.732421875 3 511.567806 1531.68159 36516.7617821802 2.275 0.0011638 447960 229.16 447960 229.16 741.399892569953 76.646 0.69376 76.646 76.304 76.998 0 67 23 4 0.845187687930076 0.00208112722604325 0.0599284313070718 0.0021925 1 17958 98.227 81.8 8 20338000 14607 10638 15992 10619 12599 14941 12041 12603 10427 8782.8 13827 10049 15981 10974 12977 14771 12240 12997 10357 8561.7 1 1 1 1 1 1 1 1 1 1 3125 1522 2748 2915 3472 3472 180 2800 MSPSQFAR 8 Phospho (STY) _MS(ph)PSQFAR_ MS(0.939)PS(0.061)QFAR MS(11.84)PS(-11.84)QFAR 0 0 1 0 Q86TB9 Q86TB9 Q86TB9 PATL1 Protein PAT1 homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.788452148438 2 502.206985 1002.39942 39798.4162704117 1.6171 0.00081213 228150 114.58 228160 114.58 616.788348132648 60.082 0.6365 60.082 59.792 60.429 -7.1054E-15 45 21 3 0.715799626637021 0.000712842411853091 0.0119800742167913 0.047598 1 14134 51.765 23.561 2 6307900 14251 9919.5 13913 10459 12500 14038 13899 12007 9528.6 4109 13484 9373.7 14014 10764 12784 13894 13961 12246 9587.2 4147 1 1 1 1 1 1 1 1 1 1 3126 1361 2749 2916 3473 3473 2470 MSPTPPLFSLPEAR 14 Acetyl (Protein N-term),Phospho (STY) _(ac)MS(ph)PTPPLFSLPEAR_ MS(0.5)PT(0.5)PPLFSLPEAR MS(0)PT(0)PPLFS(-41.19)LPEAR 1 0 1 0 Q96FV9 Q96FV9 Q96FV9 THOC1 THO complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.393188476563 2 832.891324 1663.76809 34073.0528857978 1.2458 0.0010376 0.97282 0.00081026 2.2186 0.0018479 833.394969914971 102.2 0.1754 102.2 102.1 102.28 0 13 5 3 0.610231534300278 0.000836414754559161 0.0222969290004307 0.02262 1 24086 55.426 40.759 3 20266000 7712.1 6960.2 5439.2 6601.9 9027.9 6656.7 9041.1 7284.9 7125.4 36607 7289.1 6573 5651.6 6801.4 8948 6746.7 9149.9 8386 7111.9 34639 1 1 1 1 1 1 1 1 1 1 3127 1679 2750 2917 3474 3474 3093;4726 MSQMYEIILFTASK 14 Oxidation (M) _M(ox)SQMYEIILFTASK_ M(0.5)SQM(0.5)YEIILFTASK M(0)SQM(0)YEIILFTASK 0 1 0 0 Q05D32 Q05D32 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.723815917969 3 559.945732 1676.81537 37767.6612657169 1.9638 0.0010996 272840 152.78 272840 152.78 713.057358159076 80.412 0.62053 80.412 80.132 80.752 1.4211E-14 55 20 4 0.71099840261188 0.00190821857546633 0.0159582531973601 0.036407 1 18805 47.201 10.273 2 15760000 12328 8464.3 12505 13300 14476 10028 8261.1 10408 12834 7198.5 11666 8023.4 12594 13308 14490 10215 8832.8 10642 12469 7019.1 1 1 1 1 1 1 1 1 1 1 3128 872 2751 2918 3475 3475 118;119 MSQPGSPSPK 10 Oxidation (M),Phospho (STY) _M(ox)SQPGS(ph)PSPK_ M(1)SQPGSPSPK MSQPGS(0.97)PS(0.03)PK M(95.43)SQPGSPSPK MS(-56.41)QPGS(15.14)PS(-15.14)PK 0 1 1 0 Q14839 Q14839 Q14839 CHD4 Chromodomain-helicase-DNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.930053710938 3 371.154502 1110.44168 42860.2328986742 1.3629 0.00050583 411620 152.77 411620 152.77 523.929613284 31.514 0.73142 31.514 31.152 31.883 0 103 24 5 0.79729784721797 0.00538315203804736 0.096441929890589 0.0021664 1 7040 95.428 73.871 3 50223000 20158 18990 20355 19466 16810 18572 15299 18249 20039 3435.5 19075 17942 20438 19943 17252 18658 15775 18422 19571 3657.3 1 1 1 1 1 1 1 1 1 1 3129 1030 2752 2919 3476 3476 134 1765;1766;1767 MSQPGSPSPK 10 Phospho (STY) _MSQPGS(ph)PSPK_ MSQPGS(0.999)PS(0.001)PK MS(-73.1)QPGS(28.85)PS(-28.85)PK 0 0 1 0 Q14839 Q14839 Q14839 CHD4 Chromodomain-helicase-DNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.360595703125 2 548.230657 1094.44676 35401.9403558436 2.1793 0.0011948 418010 229.16 418010 229.16 777.394188056124 41.734 0.62976 41.734 41.424 42.054 0 88 21 5 0.899385396556649 0.00262433428344993 0.0735495140576278 2.2943E-06 2 9469 154.74 124.13 3 341160000 83191 84425 85786 82819 61814 83957 64591 74982 86169 12977 78730 79744 85944 85152 64204 84016 66205 75952 84107 13955 2 2 2 2 2 2 2 2 2 2 3130 1030 2752 2920 3477;3478 3477 1765;1766;1767 MSRGMRNSK 9 Phospho (STY) _MSRGMRNS(ph)K_ MS(0.001)RGMRNS(0.999)K MS(-30.63)RGMRNS(30.63)K 0 0 1 2 REV__O43602 REV__O43602 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.915283203125 2 573.749025 1145.4835 34980.8567691942 2.2094 0.0012676 399420 229.17 399420 229.17 802.914714093838 87.008 0.53016 87.008 86.732 87.263 1.4211E-14 55 17 4 0.933487072395533 0.00371276105744572 0.0780381914812049 0.056604 1 20282 63.816 11.1 2 41604000 16066 15316 14775 12122 17909 12747 13585 12747 13443 18194 15197 14451 14982 12651 17928 12783 14032 13335 13270 17427 1 1 1 1 1 1 1 1 1 1 + 3131 2324 2753 2921 3479 3479 4280 MSSEGPPRMSPK 12 Phospho (STY) _MSSEGPPRMS(ph)PK_ MSSEGPPRMS(1)PK MS(-53.64)S(-53.98)EGPPRMS(53.64)PK 0 0 1 1 Q99700 Q99700 Q99700 ATXN2 Ataxin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.974914550781 3 461.864734 1382.57237 39376.7721592629 1.4087 0.00065064 330780 152.78 330780 152.78 614.974337820286 50.035 0.70502 50.035 49.689 50.394 0 54 23 4 0.923677322625792 0.00420285316917203 0.0329345099285583 0.0042877 1 11612 88.593 63.739 3 39210000 18161 23118 20562 25548 23212 16448 27921 25392 25757 4008.8 17194 21852 20608 25937 23463 17012 28135 25245 25506 4362.4 1 1 1 1 1 1 1 1 1 1 3132 1784 2754 2922 3480 3480 3290 MTEWETAAPAVAETPDIK 18 Acetyl (Protein N-term) _(ac)MTEWETAAPAVAETPDIK_ 1 0 0 0 P46782 P46782 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.710815429688 3 667.987313 2000.94011 36857.8806726494 1.7621 0.0011771 114350 76.387 114360 76.389 744.709519634415 97.556 0.40226 97.556 97.329 97.731 1.4211E-14 31 13 3 0.985889253790389 0.00291301390685568 0.0684707888441499 7.3962E-08 1 22659 82.707 68.743 1 7505700 3822 5688.6 3785.3 5089.4 3787.3 4091.1 4034.9 4250.7 6624.2 10803 3616.5 5370.4 3814.2 5246.2 3849.2 4167.6 4166.2 4583.1 6426.3 10271 1 1 1 1 1 1 1 1 1 1 3133 614 2755 2923 3481 3481 MTGSPTLVK 9 Phospho (STY) _MTGS(ph)PTLVK_ MTGS(0.981)PT(0.019)LVK MT(-40.44)GS(17.04)PT(-17.04)LVK 0 0 1 0 Q8IVH2 Q8IVH2 Q8IVH2 FOXP4 Forkhead box protein P4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.406982421875 2 507.240493 1012.46643 36609.9672540555 1.8619 0.00094446 451790 229.16 451790 229.17 736.40562639045 64.476 0.58292 64.476 64.182 64.765 0 53 19 4 0.801201093958175 0.00149831794165674 0.0257458638816082 8.6562E-06 1 15117 139.78 109.97 3 27010000 31233 27289 33739 23752 17806 30497 19117 23288 26554 9404.6 29564 25759 33637 24712 19036 30195 19600 23922 25886 9394.5 1 1 1 1 1 1 1 1 1 1 3134 1411 2756 2924 3482 3482 2572 MTSSPVGPGTASAGPSLPGGALPTSVR 27 Phospho (STY) _MT(ph)SSPVGPGTASAGPSLPGGALPTSVR_ MT(0.367)S(0.331)S(0.298)PVGPGT(0.003)AS(0.001)AGPSLPGGALPTSVR MT(0.45)S(-0.45)S(-0.9)PVGPGT(-21.09)AS(-26.27)AGPS(-36.04)LPGGALPT(-56.07)S(-56.07)VR 0 0 1 0 Q14686 Q14686 Q14686 NCOA6 Nuclear receptor coactivator 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.802917480469 3 844.743644 2531.2091 33164.5791625784 1.2142 0.0010257 90428 76.388 90429 76.389 921.467052590516 79.91 0.37382 79.91 79.644 80.018 0 46 12 5 0.963426656331232 0.0018615942723127 0.0255314890715002 0.037308 1 18715 58.434 43.82 8 9647300 3996 5879.6 4546.5 5171.7 3654.1 3939.3 4431.9 5169.1 5359.7 42383 3783.3 5550.2 4536.9 5333.6 3772.8 4098.8 4499.3 6414.4 5249.1 40028 1 1 1 1 1 1 1 1 1 1 3135 1021 2757 2925 3483 3483 4562 MVEPENAVTITPLRPEDDYSPR 22 Phospho (STY) _MVEPENAVTITPLRPEDDYS(ph)PR_ MVEPENAVTITPLRPEDDYS(1)PR MVEPENAVT(-113.51)IT(-97.53)PLRPEDDY(-123.21)S(97.53)PR 0 0 1 1 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 947.1220703125 3 870.403288 2608.18803 32051.1709713492 1.5669 0.0013638 87760 76.387 87762 76.388 947.123452463352 80.569 0.82893 80.569 80.22 81.049 0 98 27 5 0.919775493065821 0.00278071550619219 0.0175166490272462 6.3902E-17 1 18812 224.91 200.01 4 31568000 7502.8 5969.4 7925.3 5798.1 3817.4 7321.4 4764.6 7367.1 6120.9 26192 7101.1 5638.1 7907.5 5988.2 4131.1 7320.5 4841.6 8177.2 5981.9 24834 1 1 1 1 1 1 1 1 1 1 3136 994 2758 2926 3484 3484 1691 MVFTNNIPK 9 Phospho (STY) _MVFT(ph)NNIPK_ MVFT(1)NNIPK MVFT(73.23)NNIPK 0 0 1 0 Q6ZMZ3 Q6ZMZ3 Q6ZMZ3 SYNE3 Nesprin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.430236816406 2 572.267042 1142.51953 35835.4484665845 0.80156 0.00045871 400440 229.16 400440 229.16 801.427295878787 47.346 0.62476 47.346 47.178 47.803 0 52 25 3 0.975557275462465 0.000573076592897125 0.00252757003134822 0.018345 1 10935 73.233 42.621 1 143770000 29073 52231 30418 50204 45458 28417 47939 44631 56138 15183 27516 49329 30741 51321 45286 29688 48903 44598 55043 15330 1 1 1 1 1 1 1 1 1 1 3137 1289 2759 2927 3485 3485 4633 MVNPTVFFDIAVDGEPLGR 19 Acetyl (Protein N-term) _(ac)MVNPTVFFDIAVDGEPLGR_ 1 0 0 0 P62937 P62937 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1060.029296875 2 1060.03006 2118.04558 NaN NaN NaN NaN NaN NaN NaN NaN 104.25 1 104.25 103.75 104.75 0 NaN NaN NaN 0.0032022 1 24549 84.566 59.349 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3138 774 2760 2928 3486 3486 MVQLSPPALAAPAAPGR 17 Oxidation (M),Phospho (STY) _M(ox)VQLS(ph)PPALAAPAAPGR_ M(1)VQLSPPALAAPAAPGR MVQLS(1)PPALAAPAAPGR M(101.6)VQLSPPALAAPAAPGR MVQLS(101.6)PPALAAPAAPGR 0 1 1 0 P17542 P17542 P17542 TAL1 T-cell acute lymphocytic leukemia protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.3525390625 3 581.626824 1741.85864 38295.6570738732 2.0506 0.0011927 131330 76.388 131340 76.389 658.348718294312 75.233 1.2636 75.233 74.54 75.803 0 139 43 4 0.927627450761937 0.0024327406883047 0.0173850326887829 0.00010259 1 17583 101.6 89.315 1 29686000 2713 3282.4 2886.3 3967.5 4596 3349.6 4676.8 3594.5 3911.2 5061.5 2567.8 3104.7 2917.5 4022 4563.5 3397.7 4735.8 3748.6 3891.6 4849.2 1 1 1 1 1 1 1 1 1 1 3139 417 2761 2929 3487 3487 54 676 MVQLSPPALAAPAAPGR 17 Phospho (STY) _MVQLS(ph)PPALAAPAAPGR_ MVQLS(1)PPALAAPAAPGR MVQLS(134.29)PPALAAPAAPGR 0 0 1 0 P17542 P17542 P17542 TAL1 T-cell acute lymphocytic leukemia protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.01806640625 3 576.295185 1725.86373 38126.2384307926 1.3854 0.00079843 132550 76.388 132550 76.388 653.017047957155 85.713 1.4045 85.713 84.813 86.217 0 188 48 5 0.98364221202498 0.0114944578322338 0.15741926540402 1.2017E-05 2 20050 134.29 118.47 1 57802000 6937 7563.1 4929.7 8538.1 10392 6150.9 9666.5 8127.7 8396.3 19178 6556.6 7150.2 5144.8 8668.8 10212 6332.8 9839.8 8653.9 8338.5 18247 2 2 2 2 2 2 2 2 2 2 3140 417 2761 2930 3488;3489 3489 676 MVSQSQPGSR 10 Phospho (STY) _MVSQSQPGS(ph)R_ MVSQSQPGS(1)R MVS(-80.28)QS(-57.53)QPGS(57.53)R 0 0 1 0 O75122 O75122 O75122 CLASP2 CLIP-associating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.326965332031 2 578.744463 1155.47437 38243.1826705554 1.8885 0.001093 197980 114.58 197980 114.58 693.325436352858 32.783 0.41109 32.783 32.586 32.997 0 35 13 3 0.984376634634945 0.00126982710878956 0.019001134600808 0.00023163 1 7321 119.62 85.821 3 19957000 17680 16993 15616 17639 11710 16784 12416 16290 16967 3792 16722 16057 15796 18058 12128 16863 12729 16473 16548 3947.7 1 1 1 1 1 1 1 1 1 1 3141 168 2762 2931 3490 3490 288 MVTGNGSLK 9 Phospho (STY) _MVTGNGS(ph)LK_ MVTGNGS(1)LK MVT(-37.91)GNGS(37.91)LK 0 0 1 0 P52701 P52701 P52701 MSH6 DNA mismatch repair protein Msh6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.88671875 2 493.722468 985.430382 36930.7549505507 2.2477 0.0011097 464150 229.16 464160 229.16 722.885401707714 57.585 0.60001 57.585 57.305 57.905 7.1054E-15 64 20 4 0.866150384205878 0.00467283568599558 0.382165153454315 0.00038496 1 13452 117.95 28.92 2 62722000 33359 60893 35984 58299 38420 31196 42697 48468 63821 17719 31576 57509 36121 59583 38925 32729 43835 48481 62076 17806 1 1 1 1 1 1 1 1 1 1 3142 695 2763 2932 3491 3491 1166 MVTGNGSLKR 10 Phospho (STY) _MVTGNGS(ph)LKR_ MVTGNGS(1)LKR MVT(-57.67)GNGS(57.67)LKR 0 0 1 1 P52701 P52701 P52701 MSH6 DNA mismatch repair protein Msh6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 534.2939453125 3 381.517774 1141.53149 42041.4837429002 1.9123 0.00072957 400440 152.78 400440 152.78 534.293200710912 46.154 0.61622 46.154 45.819 46.436 0 76 20 5 0.987072696346902 0.0102613389761315 0.247757003782397 0.00025465 1 10626 108.23 81.574 2 132150000 32292 57081 32173 56688 49917 31395 52393 40851 62712 2893.3 30556 53920 32625 57823 49653 32722 53496 40698 61440 3669.8 1 1 1 1 1 1 1 1 1 1 3143 695 2764 2933 3492 3492 1166 MYPESTTGSPAR 12 Phospho (STY) _MYPESTTGS(ph)PAR_ MYPESTTGS(1)PAR MY(-191.09)PES(-92.67)T(-87.36)T(-62.18)GS(62.18)PAR 0 0 1 0 Q13303 Q13303 Q13303 KCNAB2 Voltage-gated potassium channel subunit beta-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 803.363464355469 2 688.781242 1375.54793 33944.7398018585 2.1223 0.0014618 166360 114.58 166360 114.58 803.363018595851 46.172 0.7284 46.172 45.791 46.519 0 59 24 3 0.97340566726288 0.00269940092563304 0.080628416751667 7.8281E-16 1 10678 215.93 182.55 5 31010000 39290 13262 36743 12452 30779 40332 33688 28880 12465 11651 37168 12524 37077 13283 31608 39061 33571 29764 13200 11639 1 1 1 1 1 1 1 1 1 1 3144 944 2765 2934 3493 3493 1569 MYPESTTGSPARLSLR 16 Phospho (STY) _MYPESTTGSPARLS(ph)LR_ MYPESTTGSPARLS(1)LR MY(-117.04)PES(-80.4)T(-81.07)T(-67.76)GS(-46.74)PARLS(46.74)LR 0 0 1 1 Q13303 Q13303 Q13303 KCNAB2 Voltage-gated potassium channel subunit beta-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.344787597656 3 615.957009 1844.8492 37085.2363018043 0.95469 0.00058805 124010 76.388 124020 76.388 692.678416322171 65.765 0.9157 65.765 65.284 66.2 0 69 30 4 0.889217273742368 0.00269696350636766 0.0355181777892898 4.0883E-05 1 15438 127.1 93.794 6 12335000 8154.9 4912.2 8179.3 4725.7 11118 9220.1 11351 8330 4934.5 6451.3 7716.7 4639.4 8271.1 4935.8 11106 9042.1 11368 8584.4 5141 6267.4 1 1 1 1 1 1 1 1 1 1 3145 944 2766 2935 3494 3494 1569;1570 MYPPRSPK 8 Phospho (STY) _MYPPRS(ph)PK_ MYPPRS(1)PK MY(-41.74)PPRS(41.74)PK 0 0 1 1 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.27197265625 3 352.496311 1054.4671 42900.1191768596 0.81181 0.00028616 433410 152.78 433410 152.78 505.271901048831 45.506 2.4993 45.506 44.738 47.237 0 272 85 4 0.958582710393951 0.00795208671333198 0.0860032526738708 0.0076347 2 10563 80.763 52.657 2 99102000 50215 91349 50738 78072 40785 55552 48275 66638 95315 4891.5 47518 86218 50952 80610 42126 56836 50068 66560 92052 6148.2 2 2 2 2 2 2 2 2 2 2 3146 1576 2767 2936 3495;3496 3496 2895 NADMSEEMQQDSVECATQALEK 22 Unmodified _NADMSEEMQQDSVECATQALEK_ 0 0 0 0 P63167 P63167 P63167 DYNLL1 Dynein light chain 1, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 991.799011230469 3 838.685816 2513.03562 31053.2911758989 2.0712 0.0017371 182160 152.77 182160 152.78 991.794914848275 81.45 0.54853 81.45 81.134 81.682 0 71 18 5 0.9844636450833 0.00376485619896667 0.117379035399698 4.3899E-32 1 19036 301.73 276.14 1 52314000 9060.1 8310.5 9175 8466.3 7697.6 9261.7 9237.8 9185.4 9802.4 21658 8573.6 7851.5 9216.9 8696.2 7921.1 9287.8 9344.8 9869.1 9648.1 20606 1 1 1 1 1 1 1 1 1 1 3147 779 2768 2937 3497 3497 NAEAVLQSPGLSGK 14 Phospho (STY) _NAEAVLQS(ph)PGLSGK_ NAEAVLQS(1)PGLSGK NAEAVLQS(51.75)PGLS(-51.75)GK 0 0 1 0 Q13045 Q13045 Q13045 FLII Protein flightless-1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 637.012390136719 3 484.236101 1449.68647 39225.2220749823 1.9991 0.00096804 315500 152.78 315500 152.78 637.011806683395 66.814 0.66193 66.814 66.487 67.149 0 82 22 5 0.986526082756844 0.0100608393423483 0.190391382584064 0.0001362 1 15665 111.65 88.638 2 75457000 14926 19512 15055 17597 11978 15221 11742 16428 19238 5178 14125 18422 15114 18147 12341 15388 12169 16588 18664 5255.9 1 1 1 1 1 1 1 1 1 1 3148 920 2769 2938 3498 3498 1516 NAEQNGPVDGQGDNPGPQAAEQGTDTAVPSDSDK 34 Unmodified _NAEQNGPVDGQGDNPGPQAAEQGTDTAVPSDSDK_ 0 0 0 0 P34932 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 957.452697753906 4 842.370175 3365.45159 31764.6379067062 0.91204 0.00076827 136020 114.58 136020 114.58 957.453064977317 48.352 0.50003 48.352 48.094 48.594 0 62 16 5 0.974797549882664 0.00307176678378009 0.0261298082990065 2.2798E-05 1 11215 114.52 98.51 1 28322000 5525.6 7831.2 5796.8 8671.1 6012.8 7092.6 5967.1 6498.3 9176.9 4339.2 5229.7 7402.6 5824 8826.6 6091.4 7180.4 6164.1 6672 8918.7 4236.3 1 1 1 1 1 1 1 1 1 1 3149 539 2770 2939 3499 3499 NAFACFDEEATGTIQEDYLR 20 Unmodified _NAFACFDEEATGTIQEDYLR_ 0 0 0 0 P19105;O14950 P19105 P19105 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.741271972656 3 784.01459 2349.02194 34294.9423905656 1.7682 0.0013863 97433 76.389 97435 76.391 860.737780418633 98.171 0.46824 98.171 97.933 98.401 0 33 15 4 0.973545499430441 0.00315135345464121 0.104655709242151 1.385E-05 1 22796 132.13 115.82 1 7559100 4263.3 3494.2 3979.1 3624.5 3312.8 4241.6 4454.6 4594.3 3599.5 20659 4033.1 3301.6 4017.1 3723.5 3416.5 4267.3 4456.1 5217.2 3587.9 19559 1 1 1 1 1 1 1 1 1 1 3150 72 2771 2940 3500 3500 NAISLPQLNQAAYDSLVVGK 20 Phospho (STY) _NAIS(ph)LPQLNQAAYDSLVVGK_ NAIS(1)LPQLNQAAYDSLVVGK NAIS(125.89)LPQLNQAAY(-125.89)DS(-146.81)LVVGK 0 0 1 0 Q00587 Q00587 Q00587 CDC42EP1 Cdc42 effector protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.815246582031 3 727.703226 2180.08785 33597.1077581648 1.9068 0.0013876 209940 152.77 209940 152.78 880.813016083903 100.7 0.16606 100.7 100.59 100.76 0 19 5 5 0.968284387795435 0.0143212327539918 0.231116980263867 5.141E-17 1 23573 246.2 216.82 3 117560000 53820 50952 64382 52560 5167.3 63860 6389 46692 55173 47575 50967 48142 63499 54050 8803.4 63380 7780.7 48934 52370 45878 1 1 1 1 1 1 1 1 1 1 3151 824 2772 2941 3501 3501 1323 NALPPVLTTVNGQSPPEHSAPAK 23 Phospho (STY) _NALPPVLTTVNGQS(ph)PPEHSAPAK_ NALPPVLTTVNGQS(1)PPEHSAPAK NALPPVLT(-92.66)T(-76.58)VNGQS(67.42)PPEHS(-67.42)APAK 0 0 1 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 955.509582519531 3 802.400206 2404.17879 32313.0073481555 2.0886 0.0016759 190400 152.77 190400 152.78 955.509230178701 73.857 0.68752 73.857 73.501 74.188 0 108 23 6 0.989125795610364 0.00331199311679121 0.0520499035915782 6.2077E-25 1 17311 281.47 251.33 4 63366000 10019 11033 9059.3 12145 9744.2 10493 10203 11712 12708 18411 9476.9 10429 9186.6 12376 9856.8 10642 10433 12256 12433 17607 1 1 1 1 1 1 1 1 1 1 3152 1273 2773 2942 3502 3502 2260 NALSNPK 7 Phospho (STY) _NALS(ph)NPK_ NALS(1)NPK NALS(67.21)NPK 0 0 1 0 Q96BY6 Q96BY6 Q96BY6 DOCK10 Dedicator of cytokinesis protein 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.351318359375 2 412.189118 822.363683 38895.9859980994 2.1535 0.00088766 555970 229.16 555970 229.17 641.351913851511 43.105 0.50557 43.105 42.766 43.272 0 25 16 2 0.809787388213048 0.000565863656980735 0.011293810257456 0.022273 1 9859 67.207 33.021 1 19045000 35255 11529 33564 13676 11772 33933 11087 20700 13487 3837.7 33354 10904 33626 14237 13225 32950 11384 21392 13206 4092.8 1 1 1 1 1 1 1 1 1 1 3153 1657 2774 2943 3503 3503 3054 NALTTLAGPLTPPVK 15 Phospho (STY) _NALTTLAGPLT(ph)PPVK_ NALTTLAGPLT(1)PPVK NALT(-98.85)T(-90.87)LAGPLT(90.87)PPVK 0 0 1 0 Q9H3P2 Q9H3P2 Q9H3P2 NELFA Negative elongation factor A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.726684570313 3 524.951413 1571.83241 39298.7737143968 1.2293 0.0006453 291030 152.78 291030 152.78 677.726495302655 91.282 0.83683 91.282 90.847 91.683 0 49 28 3 0.952912855020259 0.00100718456426162 0.0120216860858592 8.1552E-07 1 21284 152.04 125.01 3 10414000 3934.6 5221.6 3558.7 3555.1 3887.3 3468.7 3866.5 5058.3 5554.8 9171.7 3721.8 4923.2 3609 3750.6 3926.7 3517.9 3983 5288.6 5409.3 8753.4 1 1 1 1 1 1 1 1 1 1 3154 1932 2775 2944 3504 3504 4764 NAPAAVDEGSISPR 14 Phospho (STY) _NAPAAVDEGSIS(ph)PR_ NAPAAVDEGSIS(1)PR NAPAAVDEGS(-59.53)IS(59.53)PR 0 0 1 0 P28715 P28715 P28715 ERCC5 DNA repair protein complementing XP-G cells MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.912109375 2 732.329945 1462.64534 34142.7448170298 2.2986 0.0016833 156460 114.58 156460 114.58 846.911344606873 45.987 0.73312 45.987 45.673 46.406 0 77 24 4 0.972906410917052 0.00229722885272545 0.0470187972043738 9.9953E-23 1 10567 268.77 247.93 2 99484000 32903 19175 34524 16997 30537 33674 32067 30910 20815 20279 31141 18102 34625 17853 31235 33012 32260 31723 21015 19811 1 1 1 1 1 1 1 1 1 1 3155 495 2776 2945 3505 3505 824 NASASFQELEDK 12 Phospho (STY) _NASAS(ph)FQELEDK_ NAS(0.353)AS(0.647)FQELEDK NAS(-2.64)AS(2.64)FQELEDK 0 0 1 0 Q99543 Q99543 Q99543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.959777832031 2 709.795404 1417.57625 31826.1613180912 2.3238 0.0016494 322860 229.16 322860 229.16 938.958102949348 72.693 0.52839 72.693 72.485 73.013 0 53 17 4 0.987246336877023 0.00266495248521417 0.0852226932656419 7.8362E-17 1 17047 247.21 234.42 2 49757000 31104 49596 30506 45525 19012 29317 17791 32994 47143 25909 29430 46829 30609 46732 19982 30205 18972 33733 45271 25160 1 1 1 1 1 1 1 1 1 1 3156 1769 2777 2946 3506 3506 3254;3255 NASASFQELEDKK 13 Phospho (STY) _NAS(ph)ASFQELEDKK_ NAS(0.702)AS(0.298)FQELEDKK NAS(3.73)AS(-3.73)FQELEDKK 0 0 1 1 Q99543 Q99543 Q99543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.729614257813 3 516.231016 1545.67122 36750.3108580526 2.2577 0.0011655 443920 229.16 443920 229.16 745.393732923815 71.136 0.54582 71.136 70.884 71.43 0 73 18 5 0.989905973020329 0.00623373441392681 0.0466246849776599 1.6043E-10 1 16674 177.6 143.65 2 69979000 29881 38690 30065 43940 16914 27825 18132 28856 47686 17384 28276 36579 30105 44537 17986 28655 19207 29429 45799 17037 1 1 1 1 1 1 1 1 1 1 3157 1769 2778 2947 3507 3507 3254;3255 NASGVVNSSPR 11 Phospho (STY) _NASGVVNSS(ph)PR_ NASGVVNS(0.004)S(0.996)PR NAS(-101.35)GVVNS(-24.39)S(24.39)PR 0 0 1 0 Q8N5G2 Q8N5G2 Q8N5G2 TMEM57 Macoilin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.844177246094 2 584.261334 1166.50812 37994.5792828492 2.0168 0.0011783 196110 114.58 196110 114.58 698.842824589779 30.923 0.3925 30.923 30.728 31.12 -3.5527E-15 33 12 3 0.978565071115138 0.00237806595326183 0.104605045198131 7.0205E-07 1 6905 157.43 118.56 3 20501000 13211 12955 12304 12769 22436 11850 21356 16248 11613 3479.6 12497 12237 12563 13108 22145 11981 21523 16233 11872 3652.5 1 1 1 1 1 1 1 1 1 1 3158 1473 2779 2948 3508 3508 2721 NASSPEK 7 Phospho (STY) _NASS(ph)PEK_ NAS(0.272)S(0.728)PEK NAS(-4.28)S(4.28)PEK 0 0 1 0 Q9ULW0 Q9ULW0 Q9ULW0 TPX2 Targeting protein for Xklp2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.82666015625 2 406.662933 811.311313 39337.5906921496 2.2479 0.00091413 563520 229.16 563520 229.16 635.825977503113 29.31 0.41228 29.31 29.106 29.518 0 33 13 4 0.91695990829866 0.00397530164482264 0.129048011760772 0.00045206 1 6519 132.32 78.544 2 36853000 27218 44038 24440 40913 16918 22520 16057 31394 46975 3043.3 25745 41583 24675 41903 17630 23511 17232 31238 45039 3592.2 1 1 1 1 1 1 1 1 1 1 3159 2193 2780 2949 3509 3509 3972 NASVPNLR 8 Phospho (STY) _NAS(ph)VPNLR_ NAS(1)VPNLR NAS(97.81)VPNLR 0 0 1 0 Q9H019 Q9H019 Q9H019 MTFR1L Mitochondrial fission regulator 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.308959960938 2 475.726399 949.438245 41101.4453467329 0.92298 0.00043908 240860 114.58 240860 114.58 590.308701164209 48.336 1.2724 48.336 48.066 49.338 7.1054E-15 76 43 4 0.965392011514518 0.00563772623987372 0.113904982991102 0.0035235 1 11208 97.813 57.241 1 62245000 35354 34358 36904 31129 51392 35713 52150 41356 36696 5224.6 33460 32438 37250 32233 51294 35673 52625 41422 36864 5876.7 1 1 1 1 1 1 1 1 1 1 3160 1896 2781 2950 3510 3510 3452 NATDLQNSSMSEEELTK 17 Phospho (STY) _NATDLQNSS(ph)MSEEELTK_ NATDLQNS(0.181)S(0.817)MS(0.001)EEELTK NAT(-46.62)DLQNS(-6.54)S(6.54)MS(-28.53)EEELT(-67.98)K 0 0 1 0 P40855 P40855 P40855 PEX19 Peroxisomal biogenesis factor 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 812.720642089844 3 659.610004 1975.80818 34840.0135128523 2.2305 0.0014713 231610 152.77 231610 152.78 812.719179597714 63.958 0.66411 63.958 63.692 64.356 0 55 22 3 0.707108246946626 0.00607463785569866 0.0809525937729044 7.6479E-05 2 15021 109.85 90.298 5 48308000 45095 65134 47645 66873 46471 46732 40741 57669 70637 35810 42681 61539 47804 68234 47176 47945 42564 58501 68429 35054 2 2 2 2 2 2 2 2 2 2 3161 573 2782 2951 3511;3512 3511 923 NCPAVTLTSPAK 12 Phospho (STY) _NCPAVTLT(ph)SPAK_ NCPAVTLT(0.5)S(0.5)PAK NCPAVT(-36.55)LT(0)S(0)PAK 0 0 1 0 Q9UGU0 Q9UGU0 Q9UGU0 TCF20 Transcription factor 20 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.985900878906 3 446.875627 1337.60505 40528.0494643776 1.6661 0.00074454 341870 152.78 341880 152.78 599.651261394637 58.564 0.58512 58.564 58.231 58.817 0 62 19 4 0.977125559612852 0.00394920187852262 0.0713520169298076 0.00020889 1 13709 106.14 93.003 3 23728000 12215 12356 15036 15558 10477 13742 11150 13049 15084 4333.8 11569 11691 14923 15750 10915 13855 11425 13247 14717 4382.8 1 1 1 1 1 1 1 1 1 1 3162 2140 2783 2952 3513 3513 3853;4803 NCSASTSQGRK 11 Phospho (STY) _NCSASTS(ph)QGRK_ NCS(0.218)AS(0.085)T(0.29)S(0.407)QGRK NCS(-2.72)AS(-6.78)T(-1.48)S(1.48)QGRK 0 0 1 1 Q66PJ3 Q66PJ3 Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 578.619079589844 3 425.843098 1274.50746 41132.5788129693 1.833 0.00078059 358760 152.78 358760 152.78 578.618658877457 24.096 0.28907 24.096 23.935 24.224 0 28 9 4 0.91118014441282 0.00387994751667041 0.0767375739631655 0.049605 1 5401 41.227 21.649 4 7982500 3487.9 4006.6 3548.7 4305.1 5268.1 3954.7 5376 4516.4 4243.1 2044.7 3300.7 3786.6 3591.1 4396.5 5245 3990.6 5436.1 4570.1 4234.7 2029.8 1 1 1 1 1 1 1 1 1 1 3163 1225 2784 2953 3514 3514 2162 NCSEEKSPQTSILK 14 Phospho (STY) _NCS(ph)EEKSPQTSILK_ NCS(1)EEKSPQTSILK NCS(46.75)EEKS(-46.75)PQT(-66.69)S(-72.34)ILK 0 0 1 1 Q8ND24 Q8ND24 Q8ND24 RNF214 RING finger protein 214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.087158203125 3 567.590215 1699.74882 35995.9885033076 1.8348 0.0010414 403750 229.16 403750 229.16 796.753796625995 59.053 0.46155 59.053 58.756 59.218 0 38 15 4 0.722624246242786 0.00171118682239748 0.0279986646646817 0.0035182 1 13852 91.889 63.92 4 10235000 13253 15460 14064 14388 25798 14963 26281 18813 15436 14247 12544 14598 14260 14848 25484 15048 26432 19151 15691 13850 1 1 1 1 1 1 1 1 1 1 3164 1500 2785 2954 3515 3515 2754 NCSSPEFSK 9 Phospho (STY) _NCS(ph)SPEFSK_ NCS(0.499)S(0.499)PEFS(0.002)K NCS(0)S(0)PEFS(-23.15)K 0 0 1 0 Q99829 Q99829 Q99829 CPNE1 Copine-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.375 2 568.209921 1134.40529 35548.1685488154 1.5199 0.00086362 403310 229.16 403310 229.16 797.372344474516 48.108 0.32822 48.108 47.889 48.217 0 17 10 2 0.979156185457123 0.000521604646368951 0.00698791634533632 0.00026436 1 11167 124.6 94.825 3 17238000 19817 21011 20313 21580 26646 21139 25007 23280 20446 32345 18754 19852 20500 22116 26639 21296 25409 24244 20367 30996 1 1 1 1 1 1 1 1 1 1 3165 1792 2786 2955 3516 3516 3301;3302 NCSWAQGLNFQK 12 Phospho (STY) _NCS(ph)WAQGLNFQK_ NCS(1)WAQGLNFQK NCS(149.22)WAQGLNFQK 0 0 1 0 P48357 P48357 P48357 LEPR Leptin receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.661376953125 3 511.549914 1531.62791 37884.0986154727 2.0222 0.0010345 298650 152.78 298660 152.78 664.32525113424 83.399 0.78379 83.399 83.086 83.87 -1.4211E-14 74 26 4 0.991195624452132 0.00594345636579453 0.0456901353438481 2.8876E-07 1 19479 149.22 118.89 1 32049000 3066 17064 3158.5 18851 5659.9 3865.7 6291.6 8345.7 19630 6406.3 2901.6 16130 3206.9 19005 5617.5 4611.9 6739.2 8390.8 18803 6225.4 1 1 1 1 1 1 1 1 1 1 3166 623 2787 2956 3517 3517 1024 NDARSPGSISYLPSFFTK 18 Phospho (STY) _NDARS(ph)PGSISYLPSFFTK_ NDARS(0.998)PGS(0.002)ISYLPSFFTK NDARS(28.18)PGS(-28.18)IS(-54.23)Y(-112.73)LPS(-112.17)FFT(-160.52)K 0 0 1 1 O75376 O75376 O75376 NCOR1 Nuclear receptor corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 842.433776855469 3 689.657617 2065.95102 34197.1620052044 1.5646 0.001079 221520 152.78 221530 152.78 842.768492932061 99.301 0.34587 99.301 99.036 99.382 0 35 11 5 0.954180700757762 0.00449119519154614 0.0698070439519493 9.5647E-12 1 23058 209.29 185.61 6 56555000 32868 34749 34929 31505 21083 34926 25413 30776 34744 64871 31109 32807 34892 32601 22283 34925 25916 32986 33886 61796 1 1 1 1 1 1 1 1 1 1 3167 180 2788 2957 3518 3518 312 NDEELNK 7 Unmodified _NDEELNK_ 0 0 0 0 Q99878;Q96KK5;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;Q9BTM1;Q16777;Q96QV6;Q8IUE6;P16104 Q99878;P16104 P16104 HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;H2AFJ;HIST2H2AC;HIST1H2AA;HIST2H2AB;H2AFX Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-A;Histone H2A type 2-B;Histone H2AX MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.365478515625 2 431.201064 860.387576 38910.3273859225 2.9786 0.0012844 531450 229.16 531460 229.16 660.364214969073 38.356 0.51822 38.356 38.063 38.581 0 44 17 3 0.995192860013188 0.0030108895418002 0.100092169521328 0.006629 1 8661 106.38 51.832 1 193670000 60260 50871 60324 48235 51691 56475 54782 55682 51095 4760.8 57021 48041 60640 49820 53006 56239 55514 56027 50572 5771.6 1 1 1 1 1 1 1 1 1 1 3168 402;296 2789 2958 3519 3519 NDKSEEEQSSSSVK 14 Phospho (STY) _NDKSEEEQSSS(ph)SVK_ NDKSEEEQS(0.001)S(0.01)S(0.643)S(0.347)VK NDKS(-80.69)EEEQS(-30.88)S(-18.15)S(2.67)S(-2.67)VK 0 0 1 1 P07910 P07910 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.391540527344 3 545.224478 1632.6516 36570.4522906124 1.9915 0.0010858 420310 229.16 420310 229.17 774.72174666783 33.105 0.37332 33.105 32.882 33.256 0 45 12 4 0.584187961437506 0.00234629237849109 0.0558159673931419 3.1855E-07 1 7396 162.42 119.12 5 15132000 22710 30221 21238 26530 17978 23821 18820 24917 29950 4383.1 21484 28528 21432 27422 18459 24020 19421 25083 29080 4703.9 1 1 1 1 1 1 1 1 1 1 3169 324 2790 2959 3520 3520 530;531 NDKSEEEQSSSSVK 14 Phospho (STY) _NDKS(ph)EEEQSSSSVK_ NDKS(1)EEEQSSSSVK NDKS(75.68)EEEQS(-75.68)S(-97.78)S(-115.89)S(-120.32)VK 0 0 1 1 P07910 P07910 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1161.58044433594 2 817.333079 1632.6516 30009.7001956797 1.0791 0.000882 420570 343.74 420570 343.75 1161.07779397298 35.832 0.37498 35.832 35.651 36.026 0 39 12 4 0.981830448123913 0.00107530096943295 0.0164286311450421 7.6398E-11 1 8066 204.13 174.79 5 22463000 11584 13177 11251 13723 17318 12360 17616 15600 14219 991.66 10960 12451 11423 14035 17217 12493 17824 15552 14174 1294.8 1 1 1 1 1 1 1 1 1 1 3170 324 2790 2959 3521 3521 530;531 NDKSEEEQSSSSVK 14 Phospho (STY) _NDKS(ph)EEEQSSSSVK_ NDKS(1)EEEQSSSSVK NDKS(42.96)EEEQS(-42.96)S(-47.65)S(-61.42)S(-84.93)VK 0 0 1 1 P07910 P07910 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.390380859375 3 545.224478 1632.6516 35280.7518241979 1.3894 0.00075755 420310 229.16 420310 229.16 774.388206858639 35.865 1.7942 35.865 35.389 37.183 -7.1054E-15 219 61 7 0.966165786572716 0.0013601821483453 0.010183538252347 1.3799E-07 1 8267 170.14 127.42 5 1655200000 20518 18630 21030 18826 23577 20055 22657 22062 19655 4810.8 19417 17600 21176 19338 23760 20081 23024 22197 19520 5040.5 1 1 1 1 1 1 1 1 1 1 3171 324 2790 2959 3522 3522 530;531 NDLAVVDVR 9 Unmodified _NDLAVVDVR_ 0 0 0 0 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.357482910156 2 500.774731 999.534909 40722.9718099217 1.5896 0.00079604 228810 114.58 228810 114.58 615.356670800221 60.331 0.46696 60.331 60.079 60.546 7.1054E-15 26 15 2 0.911109936699046 0.00126617283542299 0.0255657138421947 0.027699 1 14145 85.377 36.581 1 10962000 14658 11540 15691 12176 13480 16480 14323 14866 14894 7487.7 13874 10905 15715 12532 13822 16320 14555 15199 14672 7394.7 1 1 1 1 1 1 1 1 1 1 3172 437 2791 2960 3523 3523 NDLQDTEISPR 11 Phospho (STY) _NDLQDTEIS(ph)PR_ NDLQDTEIS(1)PR NDLQDT(-75.01)EIS(75.01)PR 0 0 1 0 Q9NS91 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.879150390625 2 684.295571 1366.57659 35053.15724596 1.562 0.0010689 167440 114.58 167450 114.58 798.876750537812 47.839 0.67626 47.839 47.6 48.276 7.1054E-15 56 22 4 0.989161701181592 0.00151167209446682 0.0498509562723532 2.4599E-07 1 11063 169.52 110.1 2 35519000 18336 33455 17764 33347 22631 17904 23722 27369 35134 22476 17348 31603 17981 33998 22705 18797 24407 27764 34182 21798 1 1 1 1 1 1 1 1 1 1 3173 2026 2792 2961 3524 3524 3678 NDQCYDDIR 9 Unmodified _NDQCYDDIR_ 0 0 0 0 Q9ULV4 Q9ULV4 Q9ULV4 CORO1C Coronin-1C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.329711914063 2 599.743302 1197.47205 36897.9595218603 2.1512 0.0012902 191050 114.58 191050 114.58 714.325763495328 38.699 0.28944 38.699 38.524 38.814 -7.1054E-15 15 9 2 0.957933130990938 0.000564944648067004 0.0124725339800992 0.0087032 1 8779 97.277 65.056 1 7380300 15465 15111 16334 17967 15862 16024 17643 18291 16595 6942.8 14638 14291 16395 18242 16149 16190 17844 18468 16419 6960.8 1 1 1 1 1 1 1 1 1 1 3174 2192 2793 2962 3525 3525 NDSPTQIPVSSDVCR 15 Phospho (STY) _NDS(ph)PTQIPVSSDVCR_ NDS(0.997)PT(0.003)QIPVSSDVCR NDS(24.76)PT(-24.76)QIPVS(-101.51)S(-105.15)DVCR 0 0 1 0 Q8TC07 Q8TC07 Q8TC07 TBC1D15 TBC1 domain family member 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 992.4541015625 2 877.874391 1753.73423 31243.7070985163 2.0953 0.0018394 130520 114.58 130520 114.58 992.456848467304 53.548 0.70837 53.548 53.294 54.002 0 61 23 4 0.833973681995917 0.00130870607416027 0.0181536928046802 1.7641E-11 1 12469 211.33 172.54 4 23622000 14907 14403 14638 14520 12011 14746 12366 14357 15508 13794 14105 13607 14724 14905 12352 14792 12656 14832 15168 13321 1 1 1 1 1 1 1 1 1 1 3175 1541 2794 2963 3526 3526 2830 NDSWGSFDLR 10 Phospho (STY) _NDS(ph)WGSFDLR_ NDS(0.982)WGS(0.018)FDLR NDS(17.36)WGS(-17.36)FDLR 0 0 1 0 Q7Z417 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.335021972656 2 638.753342 1275.49213 35736.7500599388 1.6693 0.0010662 179380 114.58 179390 114.58 753.335189790303 83.357 1.3289 83.357 83.028 84.357 0 119 45 4 0.884603196761933 0.00182552007851446 0.0340400595135336 2.503E-07 2 19459 173.72 127.72 2 27724000 25730 21348 28041 20782 25722 24592 25653 27438 20699 40724 24356 20163 28074 21434 26234 24592 25981 28639 20633 38982 2 2 2 2 2 2 2 2 2 2 3176 1335 2795 2964 3527;3528 3527 2407 NEDEDSPNK 9 Unmodified _NEDEDSPNK_ 0 0 0 0 P62899 P62899 P62899 RPL31 60S ribosomal protein L31 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.3798828125 2 524.2149 1046.41525 36286.7542215184 2.6402 0.001384 437160 229.16 437160 229.16 753.378031099442 28.136 0.25606 28.136 28.008 28.264 0 22 8 3 0.972217440547809 0.00159663560137559 0.079759980575075 8.5944E-09 1 6267 195.57 139.86 1 11785000 27234 26832 25183 27976 19276 26382 19156 23832 30483 2971.6 25763 25354 25403 28629 19919 26489 19815 24093 29597 3349.7 1 1 1 1 1 1 1 1 1 1 3177 773 2796 2965 3529 3529 NEDEEEEEEEKDEAEDLLGR 20 Unmodified _NEDEEEEEEEKDEAEDLLGR_ 0 0 0 1 Q9Y5B9 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 956.113464355469 3 803.00162 2405.98303 32470.1351066637 1.921 0.0015426 190260 152.78 190260 152.78 956.111735837656 74.602 0.55624 74.602 74.302 74.859 0 69 18 5 0.831554528012963 0.00344212983060576 0.0491730918952454 6.4803E-13 1 17488 213.16 192.73 1 22299000 9012.3 12230 10542 11091 13975 9746.8 14821 13017 12088 15478 8533.6 11547 10571 11436 13988 9899.8 14971 13397 12043 14876 1 1 1 1 1 1 1 1 1 1 3178 2292 2797 2966 3530 3530 NEEDEGHSNSSPR 13 Phospho (STY) _NEEDEGHSNS(ph)SPR_ NEEDEGHS(0.096)NS(0.452)S(0.452)PR NEEDEGHS(-6.73)NS(0)S(0)PR 0 0 1 0 Q14103 Q14103 Q14103 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 589.913146972656 3 513.189879 1536.54781 41705.9160822743 1.8836 0.00096666 148850 76.387 148850 76.388 589.577200974699 20.311 0.29439 20.311 20.142 20.437 0 21 9 3 0.955839816209762 0.00380907066816949 0.0287153073419766 0.042594 1 4610 43.813 37.709 3 934190 320.45 0 256.04 0 0 238.37 0 313.44 339.12 1247.6 302.99 0 258.38 0 0 231.58 0 349.09 320.22 1182 1 0 1 0 0 1 0 1 1 1 3179 985 2798 2967 3531 3531 1662;1663 NEEPSEEEIDAPKPK 15 Phospho (STY) _NEEPS(ph)EEEIDAPKPK_ NEEPS(1)EEEIDAPKPK NEEPS(64.83)EEEIDAPKPK 0 0 1 1 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 827.758422851563 3 597.927661 1790.76115 34307.6752277919 2.3451 0.0014022 383260 229.16 383260 229.16 827.425052382484 52.422 0.82958 52.422 52.041 52.87 -7.1054E-15 149 28 8 0.995903366910914 0.00239242750736017 0.0173105378287977 0.013218 1 12141 64.83 46.07 1 657690000 30345 29568 30605 31251 18085 31455 16083 27163 34021 13602 28715 27942 30645 31988 19081 31492 16958 27823 32808 13437 1 1 1 1 1 1 1 1 1 1 3180 2012 2799 2968 3532 3532 3656 NEEPVRSPER 10 Phospho (STY) _NEEPVRS(ph)PER_ NEEPVRS(1)PER NEEPVRS(94.12)PER 0 0 1 1 Q92922 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 507.913726806641 3 431.525874 1291.55579 43366.6059721785 0.85552 0.00036918 177020 76.388 177020 76.388 507.913284166354 26.365 0.69258 26.365 25.958 26.65 0 87 23 5 0.569361156005134 0.00496525266865698 0.131911866953226 0.0024461 1 5847 94.119 70.514 1 17766000 11346 15168 12817 17574 10699 11623 9500.7 13713 18229 3959.7 10742 14343 12793 17802 10973 11950 9967.5 13794 17616 4045.9 1 1 1 1 1 1 1 1 1 1 3181 1631 2800 2969 3533 3533 3015 NEEPVRSPERR 11 Phospho (STY) _NEEPVRS(ph)PERR_ NEEPVRS(1)PERR NEEPVRS(87.39)PERR 0 0 1 2 Q92922 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.948181152344 3 483.559578 1447.6569 40615.3414140936 1.5026 0.00072658 157970 76.387 157970 76.388 559.947480855723 23.832 0.95411 23.832 23.556 24.511 0 115 32 6 0.99665133248666 0.0207206726908011 0.157116163390036 0.007348 1 5309 87.388 57.254 1 383110000 4220.2 5167.5 4621.2 4865.1 3644.8 4775.9 3723.4 4153.3 5224.5 1023.6 3994.9 4879.8 4618.5 5012.4 3758.9 4785.2 3827.5 4221 5091.4 1060 1 1 1 1 1 1 1 1 1 1 3182 1631 2801 2970 3534 3534 3015 NEILESKIDNQEER 14 Phospho (STY) _NEILES(ph)KIDNQEER_ NEILES(1)KIDNQEER NEILES(78.08)KIDNQEER 0 0 1 1 REV__Q5T1M5 REV__Q5T1M5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 452.033905029297 5 360.167064 1795.79894 46448.4079035523 0.28172 0.00010147 254510 91.666 254510 91.666 452.233931774127 55.905 0.77223 55.905 55.653 56.425 0 80 25 4 0.979483103918504 0.00208374669696879 0.0104115745675813 0.011455 1 13050 78.078 47.312 1 25434000 20105 21836 22955 21130 20727 22474 23336 22799 23921 1265.5 19035 20624 22928 21760 21203 22473 23645 22894 23578 1719.3 1 1 1 1 1 1 1 1 1 1 + 3183 2334 2802 2971 3535 3535 4292 NEMGIPQQTTSPENAGPQNTK 21 Phospho (STY) _NEMGIPQQTTS(ph)PENAGPQNTK_ NEMGIPQQTT(0.004)S(0.996)PENAGPQNTK NEMGIPQQT(-38.89)T(-24.06)S(24.06)PENAGPQNT(-105)K 0 0 1 0 Q15398 Q15398 Q15398 DLGAP5 Disks large-associated protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 927.78515625 3 774.673778 2320.9995 31835.4245298145 1.8755 0.0014529 197210 152.78 197210 152.78 927.783196468065 57.13 0.46505 57.13 56.928 57.393 0 56 15 4 0.865761492105256 0.0024709706161648 0.0156376700520409 4.604E-08 1 13344 161.68 142.85 4 19418000 10021 15918 10055 13676 8978.2 10373 10548 12345 17340 16652 9482.3 15024 10112 14126 9203.2 10600 10848 12808 16822 15965 1 1 1 1 1 1 1 1 1 1 3184 1074 2803 2972 3536 3536 1857 NENLAANFLLQQNFDED 17 Unmodified _NENLAANFLLQQNFDED_ 0 0 0 0 P54727 P54727 P54727 RAD23B UV excision repair protein RAD23 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.363830566406 3 665.641193 1993.90175 35980.6167261455 1.9286 0.0012838 114760 76.387 114760 76.389 742.362779774116 100.49 0.22347 100.49 100.37 100.59 0 25 7 5 0.986840235532196 0.0159429593052218 0.299418229882357 5.0638E-06 1 23499 137.14 124.66 1 115510000 10403 10652 11057 11587 10034 12689 8786 10384 10759 25125 9846.6 10068 11081 11857 10227 12688 9057.4 11262 10533 23899 1 1 1 1 1 1 1 1 1 1 3185 713 2804 2973 3537 3537 NENLAANFLLSQNFDDE 17 Unmodified _NENLAANFLLSQNFDDE_ 0 0 0 0 P54725 P54725 P54725 RAD23A UV excision repair protein RAD23 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1092.52856445313 2 977.444876 1952.8752 30586.5871418982 1.5598 0.0015246 117220 114.58 117230 114.58 1092.52701561954 100.8 0.25512 100.8 100.73 100.98 0 12 8 4 0.503276241400455 0.00183186930359183 0.0543380485108033 0.00029872 1 23627 117.72 90.384 1 43622000 31932 27666 34101 23745 14952 35601 15789 25757 30742 78323 30224 26112 33981 24811 16330 35180 16441 28578 29699 74346 1 1 1 1 1 1 1 1 1 1 3186 712 2805 2974 3538 3538 NFDFEGSLSPVIAPK 15 Phospho (STY) _NFDFEGSLS(ph)PVIAPK_ NFDFEGS(0.039)LS(0.961)PVIAPK NFDFEGS(-13.93)LS(13.93)PVIAPK 0 0 1 0 Q9H1A4 Q9H1A4 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.378601074219 3 567.602561 1699.78585 37310.2107634948 2.0915 0.0011872 269160 152.78 269160 152.78 720.712080692152 98.784 0.54874 98.784 98.518 99.066 -1.4211E-14 69 18 5 0.942445753731349 0.00278729392663988 0.0640420842856103 6.6908E-07 1 22898 145.05 128.74 2 54144000 8257.1 9405.7 8660.2 9494.2 5701.6 8101 6784.5 8557.1 10249 21671 7814.8 8885.7 8663 9720.5 5979.3 8228.8 6948.9 9218.7 9966.2 20604 1 1 1 1 1 1 1 1 1 1 3187 1911 2806 2975 3539 3539 3469 NFGEDMDDER 10 Oxidation (M) _NFGEDM(ox)DDER_ NFGEDM(1)DDER NFGEDM(146.71)DDER 0 1 0 0 Q9H361;P11940 Q9H361 Q9H361 PABPC3;PABPC1 Polyadenylate-binding protein 3;Polyadenylate-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.812927246094 2 622.230224 1242.4459 36655.7873463507 1.8586 0.0011565 184150 114.58 184150 114.58 736.811563032941 36.49 0.3678 36.49 36.26 36.628 0 27 12 3 0.982239296698036 0.000868193980281826 0.030311692846443 2.0948E-06 1 8212 146.71 92.099 1 14961000 17648 16678 17086 17534 13141 19161 12731 15363 17020 6124.3 16698 15760 17188 17977 13567 19097 13096 15742 16612 6122.3 1 1 1 1 1 1 1 1 1 1 3188 367 2807 2976 3540 3540 46 NFGEDMDDER 10 Unmodified _NFGEDMDDER_ 0 0 0 0 Q9H361;P11940 Q9H361 Q9H361 PABPC3;PABPC1 Polyadenylate-binding protein 3;Polyadenylate-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.816040039063 2 614.232767 1226.45098 36611.5808242798 1.1799 0.00072476 186540 114.58 186540 114.58 728.81422193444 48.594 0.6353 48.594 48.334 48.969 0 58 21 4 0.969272310875604 0.00179315901055434 0.0356930425102607 3.3786E-09 1 11245 195.34 143.48 1 66455000 31814 30874 31432 31432 20475 32462 22808 30279 29346 6163.7 30102 29169 31542 32256 21464 32477 23283 30643 28679 6504.7 1 1 1 1 1 1 1 1 1 1 3189 367 2807 2977 3541 3541 NFSDNQLQEGK 11 Phospho (STY) _NFS(ph)DNQLQEGK_ NFS(1)DNQLQEGK NFS(169.3)DNQLQEGK 0 0 1 0 P37802 P37802 P37802 TAGLN2 Transgelin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.633972167969 3 453.857401 1358.55037 39969.5515738894 1.2467 0.00056582 336620 152.78 336620 152.78 606.633183404909 57.762 1.1274 57.762 57.393 58.521 7.1054E-15 151 38 6 0.993931747407017 0.0137076887937098 0.555841275739523 1.5224E-07 1 13477 169.3 135.43 1 267390000 16144 27266 15344 23986 33013 13179 32639 25594 27347 5144.8 15274 25739 15713 24654 32448 13858 33097 25347 27207 5436.8 1 1 1 1 1 1 1 1 1 1 3190 559 2808 2978 3542 3542 905 NFSDNQLQEGK 11 Phospho (STY) _NFS(ph)DNQLQEGK_ NFS(1)DNQLQEGK NFS(146.59)DNQLQEGK 0 0 1 0 P37802 P37802 P37802 TAGLN2 Transgelin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 909.949157714844 2 680.282464 1358.55037 32194.7342384644 1.68 0.0011429 336860 229.16 336870 229.16 909.445740384385 57.77 1.0429 57.77 57.478 58.521 7.1054E-15 126 35 5 0.967975677435194 0.005693655264425 0.463647297509521 1.1114E-06 1 13481 146.59 121.24 1 251560000 24535 43676 26099 46315 56943 26817 60022 47150 51810 16294 23222 41274 26574 47081 56001 28035 60724 46998 51469 16434 1 1 1 1 1 1 1 1 1 1 3191 559 2808 2978 3543 3543 905 NFSNSPGPYVFCITEK 16 Phospho (STY) _NFSNS(ph)PGPYVFCITEK_ NFS(0.031)NS(0.969)PGPYVFCITEK NFS(-14.94)NS(14.94)PGPY(-74.15)VFCIT(-125.6)EK 0 0 1 0 Q8NAP3 Q8NAP3 Q8NAP3 ZBTB38 Zinc finger and BTB domain-containing protein 38 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.05908203125 3 647.281382 1938.82232 34628.6629188386 2.169 0.0014039 236030 152.78 236030 152.78 800.390950285364 95.945 0.49464 95.945 95.707 96.202 0 43 16 4 0.969163187151494 0.00190361885197383 0.0666122556014359 3.7369E-07 1 22319 153.1 132.66 4 10713000 3998.4 11179 5234.7 10984 4022.6 4816.4 6141.2 7073.9 12727 15835 3788.1 10559 5189.1 11190 4189.9 5161.1 6329.8 7485.2 12278 15074 1 1 1 1 1 1 1 1 1 1 3192 1491 2809 2979 3544 3544 2739 NFTKPQDGDVIAPLITPQK 19 Phospho (STY) _NFTKPQDGDVIAPLIT(ph)PQK_ NFTKPQDGDVIAPLIT(1)PQK NFT(-90.98)KPQDGDVIAPLIT(90.98)PQK 0 0 1 1 Q9Y3Z3 Q9Y3Z3 Q9Y3Z3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.401062011719 4 541.277785 2161.08204 38600.3451749891 2.0313 0.0010995 317530 171.87 317530 171.87 713.400446835633 83.905 0.4868 83.905 83.615 84.102 0 51 16 4 0.864490431622566 0.00188561906972783 0.0211682080186813 4.6865E-05 1 19600 111.4 87.602 2 8676500 9085.1 2634.6 10210 2893.5 2747.3 8878.3 2502.8 5804.8 2768.1 5089.6 8601.1 2490.3 10124 3051.3 3225.4 8603.1 2566.6 6095.1 2720.1 4926.8 1 1 1 1 1 1 1 1 1 1 3193 2272 2810 2980 3545 3545 4850 NFVFHTLSPVK 11 Phospho (STY) _NFVFHTLS(ph)PVK_ NFVFHT(0.08)LS(0.92)PVK NFVFHT(-10.6)LS(10.6)PVK 0 0 1 0 Q9HAW4 Q9HAW4 Q9HAW4 CLSPN Claspin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.00537109375 3 456.895239 1367.66389 40269.0163400005 1.4603 0.00066721 334380 152.78 334380 152.78 610.004804237704 84.833 0.69122 84.833 84.552 85.243 -1.4211E-14 62 23 3 0.976814493277341 0.00793588879626833 0.13601833013725 0.0045795 1 19797 87.363 58.015 2 30866000 10156 9321.8 9129.6 11334 6101.4 9191 5136.3 8654.4 10868 6176.9 9606.5 8817.4 9213.1 11480 6362.2 9313.1 5431.6 8887.9 10480 6016.6 1 1 1 1 1 1 1 1 1 1 3194 1975 2811 2981 3546 3546 3591 NFVFHTLSPVKAEAAK 16 Phospho (STY) _NFVFHTLS(ph)PVKAEAAK_ NFVFHT(0.009)LS(0.991)PVKAEAAK NFVFHT(-20.61)LS(20.61)PVKAEAAK 0 0 1 1 Q9HAW4 Q9HAW4 Q9HAW4 CLSPN Claspin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 632.357360839844 4 460.485473 1837.91279 40027.0234732195 1.8539 0.00085371 373240 171.87 373240 171.87 632.608480020528 83.037 0.67302 83.037 82.739 83.412 0 59 22 4 0.723152080169366 0.00119375177133546 0.00518943661130609 2.9875E-05 1 19397 132.01 113.42 2 9418500 4787.1 5495.5 4735.9 5758.1 4405.4 5060.9 3422.8 5294.6 5312.8 5247.4 4529.6 5192.9 4765.8 5885 4478 5116.7 3583 5459.9 5162 5063.6 1 1 1 1 1 1 1 1 1 1 3195 1975 2812 2982 3547 3547 3591 NFYESDDDQKEK 12 Phospho (STY) _NFYES(ph)DDDQKEK_ NFYES(1)DDDQKEK NFY(-74.39)ES(74.39)DDDQKEK 0 0 1 1 O00203 O00203 O00203 AP3B1 AP-3 complex subunit beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.704223632813 3 533.206647 1596.59811 37321.8052528147 2.2258 0.0011868 429780 229.16 429780 229.16 762.369000528047 53.446 1.2093 53.446 53.177 54.387 0 88 40 4 0.833906144506597 0.000952181402136511 0.0119535250725103 4.4027E-05 1 12423 127.83 112.94 2 15348000 22347 19259 21541 19565 16002 23501 16987 23306 20440 15767 21143 18195 21671 20133 16583 23408 17339 23861 20021 15386 1 1 1 1 1 1 1 1 1 1 3196 37 2813 2983 3548 3548 60 NGDECAYHHPISPCK 15 Phospho (STY) _NGDECAYHHPIS(ph)PCK_ NGDECAYHHPIS(1)PCK NGDECAY(-38.05)HHPIS(38.05)PCK 0 0 1 0 Q6PJT7 Q6PJT7 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.353759765625 3 622.242932 1863.70697 36316.1707782 2.111 0.0013135 245520 152.77 245530 152.78 775.352590603762 38.989 0.61622 38.989 38.638 39.255 0 59 20 4 0.652210623550204 0.0014964724175342 0.0127850334747567 0.0060849 1 8871 84.975 67.896 2 12025000 17132 18513 17498 17625 13510 19544 17505 17851 20342 13819 16213 17483 17557 18182 14004 19509 17705 18387 19951 13425 1 1 1 1 1 1 1 1 1 1 3197 1271 2814 2984 3549 3549 2252 NGDLDEVKDYVAK 13 Unmodified _NGDLDEVKDYVAK_ 0 0 0 1 P58546 P58546 P58546 MTPN Myotrophin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.410339355469 3 489.243823 1464.70964 36879.2222415429 2.5906 0.0012674 468400 229.16 468400 229.16 718.40665286462 72.677 0.35299 72.677 72.485 72.838 0 19 11 2 0.94710169394414 0.00091321784517029 0.016815539979702 0.00021212 1 17071 120.3 91.497 1 7436800 9047.1 13486 11459 12795 13848 9622.7 13878 14077 14289 10658 8569.9 12736 11429 13129 13913 9862.8 14136 14268 14081 10361 1 1 1 1 1 1 1 1 1 1 3198 737 2815 2985 3550 3550 NGPSSSPFSSPASSR 15 Phospho (STY) _NGPSSS(ph)PFSSPASSR_ NGPSS(0.076)S(0.924)PFSSPASSR NGPS(-33.27)S(-10.86)S(10.86)PFS(-42.3)S(-66.95)PAS(-101.31)S(-117.72)R 0 0 1 0 A8CG34;A6NF01;Q96HA1 A8CG34;Q96HA1 Q96HA1 POM121C;POM121B;POM121 Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.404418945313 2 772.822484 1543.63042 32674.7885753639 1.8915 0.0014618 148260 114.58 148270 114.58 887.403532608726 44.094 0.46792 44.094 43.847 44.315 0 35 15 3 0.95594984706954 0.000499713579544628 0.0196097177850198 1.8814E-22 1 10129 253.79 237.22 7 11300000 13895 12732 12391 14003 11698 12676 11598 14192 15356 4873 13142 12035 12555 14279 11914 12793 11914 14324 14993 4916.9 1 1 1 1 1 1 1 1 1 1 3199 1688;15 2816 2986 3551 3551 27 NGSPEIK 7 Phospho (STY) _NGS(ph)PEIK_ NGS(1)PEIK NGS(73.5)PEIK 0 0 1 0 O96028 O96028 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.84423828125 2 412.681126 823.347699 40105.164129042 2.4963 0.0010302 555300 229.16 555300 229.16 641.843724045086 41.67 0.42979 41.67 41.368 41.798 0 25 14 2 0.925246747031594 0.00113091682517829 0.0288288908539579 0.018607 1 9492 73.499 22.223 1 12705000 18897 21965 19314 22214 16292 17431 15410 19872 23946 4823.8 17883 20751 19385 22716 16707 17725 15962 19984 23265 5002.1 1 1 1 1 1 1 1 1 1 1 3200 276 2817 2987 3552 3552 461 NGVAAEVSPAKEENPR 16 Phospho (STY) _NGVAAEVS(ph)PAKEENPR_ NGVAAEVS(1)PAKEENPR NGVAAEVS(173.65)PAKEENPR 0 0 1 1 Q9BW71 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.046630859375 3 583.271874 1746.79379 37038.8996059896 1.8005 0.0010502 261930 152.78 261930 152.78 736.381563566093 43.073 0.44433 43.073 42.855 43.299 0 28 14 3 0.949225843708986 0.00097379107826883 0.00948239496768328 3.8311E-08 1 9851 173.65 156.08 1 19831000 17763 13936 19099 13789 21951 16443 24197 19004 13336 4889.1 16813 13164 19194 14210 22129 16405 24225 19110 13619 5043.5 1 1 1 1 1 1 1 1 1 1 3201 1849 2818 2988 3553 3553 3380 NGVVDAWAGPAQVPEEGAVTVTVGGSGGDKGSGFPDGEGSSR 42 Phospho (STY) _NGVVDAWAGPAQVPEEGAVTVTVGGS(ph)GGDKGSGFPDGEGSSR_ NGVVDAWAGPAQVPEEGAVTVT(0.002)VGGS(0.987)GGDKGS(0.011)GFPDGEGSSR NGVVDAWAGPAQVPEEGAVT(-46.09)VT(-26.11)VGGS(19.67)GGDKGS(-19.67)GFPDGEGS(-37.73)S(-36.65)R 0 0 1 1 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1125.294921875 4 1010.20918 4036.80761 29814.9559413303 0.48046 0.00048537 113420 114.58 113420 114.58 1125.29334889384 86.655 0.80714 86.655 86.278 87.085 0 65 27 3 0.935150350108644 0.00203778276971953 0.0531773967532362 5.4133E-13 2 20200 183.52 167.83 6 14118000 1094.9 2243.2 2716.7 3083.4 2786.4 1093.4 3616 6356.8 2573.7 72043 1042.1 2123.9 2644.8 3082.7 2834.3 1199.7 3612.4 8343.2 2583.7 67984 2 2 2 2 2 1 2 2 2 2 3202 403 2819 2989 3554;3555 3554 637;638 NHLLQFALESPAK 13 Phospho (STY) _NHLLQFALES(ph)PAK_ NHLLQFALES(1)PAK NHLLQFALES(125.98)PAK 0 0 1 0 Q9NS91 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.369873046875 3 516.592108 1546.75449 38675.2018823092 1.7713 0.00091503 295740 152.78 295740 152.78 669.368014943523 85.017 0.49157 85.017 84.721 85.213 0 51 16 4 0.960864531988796 0.0015400878408693 0.0801161523192138 5.8521E-05 1 19836 125.98 96.532 1 5111500 3935.4 5806.6 3871.1 5622.2 3586 4867.2 3888.5 3746.6 5839.9 13900 3723.7 5484.2 3898.8 5771.8 3662 4924.5 3997.1 4220.4 5679.5 13175 1 1 1 1 1 1 1 1 1 1 3203 2026 2820 2990 3556 3556 3679 NHLSPQQGGATPQVPSPCCR 20 Phospho (STY) _NHLS(ph)PQQGGATPQVPSPCCR_ NHLS(1)PQQGGATPQVPSPCCR NHLS(90.48)PQQGGAT(-90.48)PQVPS(-168.02)PCCR 0 0 1 0 Q9H4L4 Q9H4L4 Q9H4L4 SENP3 Sentrin-specific protease 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 834.386108398438 3 757.664671 2269.97218 34077.4033541919 1.3802 0.0010457 100820 76.387 100820 76.388 834.049884442616 46.524 1.189 46.524 45.961 47.15 0 126 40 5 0.982808160603344 0.005970824789282 0.0228382686186781 5.6157E-12 1 10741 208.99 177.48 3 71959000 11937 15976 15383 15193 32175 15516 34317 23384 18083 22661 11309 15088 15501 15652 31675 15679 34385 23834 18531 21880 1 1 1 1 1 1 1 1 1 1 3204 1938 2821 2991 3557 3557 3510 NHSDSSTSESEVSSVSPLK 19 Phospho (STY) _NHSDSSTSESEVSS(ph)VSPLK_ NHSDSSTSESEVS(0.067)S(0.908)VS(0.025)PLK NHS(-74.28)DS(-61.53)S(-58.93)T(-51.76)S(-51.76)ES(-41.06)EVS(-11.29)S(11.29)VS(-15.62)PLK 0 0 1 0 Q9NY27 Q9NY27 Q9NY27 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.404846191406 3 686.295072 2055.86339 34780.5586125398 1.1132 0.00076399 222610 152.77 222610 152.78 839.403769825684 48.411 0.5276 48.411 48.152 48.68 0 38 17 3 0.885968817969989 0.00147797782784573 0.0130521069095892 1.2989E-07 1 11217 152.66 137.02 9 21812000 7302.9 7752.5 9047.3 8968.1 9997.9 12980 16149 13713 10928 14439 6916.9 7330.5 9033.1 9198.5 10172 12868 16000 14162 11005 13913 1 1 1 1 1 1 1 1 1 1 3205 2068 2822 2992 3558 3558 3737 NHSGSRTPPVALNSSR 16 2 Phospho (STY) _NHSGS(ph)RT(ph)PPVALNSSR_ NHS(0.529)GS(0.766)RT(0.704)PPVALNSSR NHS(-2.01)GS(3.04)RT(2.01)PPVALNS(-34.88)S(-38.35)R 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.323852539063 3 613.934806 1838.78259 NaN NaN NaN NaN NaN NaN NaN NaN 33.369 1 33.369 32.869 33.869 0 NaN NaN NaN 0.039274 1 7468 58.758 48.553 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3206 2226 2823 2993 3559 3559 4060;4826 NHSNAQFIESYVCR 14 Phospho (STY) _NHS(ph)NAQFIESYVCR_ NHS(1)NAQFIESYVCR NHS(139.92)NAQFIES(-139.92)Y(-157.02)VCR 0 0 1 0 P41229 P41229 P41229 KDM5C Lysine-specific demethylase 5C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.641845703125 3 602.253937 1803.73998 37697.1075679566 1.6758 0.0010092 126840 76.387 126840 76.388 678.975708308991 67.039 0.95501 67.039 66.72 67.675 1.4211E-14 108 32 5 0.987803013536567 0.00368597624970819 0.0820065887351287 5.7825E-11 1 15709 202.81 179.32 3 58270000 4673.2 4389.2 4814.4 5817.4 5735.1 4908.4 5535 5513 5972.6 4802.4 4422.6 4154.5 4850.6 5871.3 5763.2 4977.1 5655.7 5651.2 5874.6 4649.6 1 1 1 1 1 1 1 1 1 1 3207 579 2824 2994 3560 3560 930 NHSQHILK 8 Phospho (STY) _NHS(ph)QHILK_ NHS(1)QHILK NHS(69.86)QHILK 0 0 1 0 Q53QZ3 Q53QZ3 Q53QZ3 ARHGAP15 Rho GTPase-activating protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.612640380859 3 352.837724 1055.49134 43980.6318051698 0.2297 8.1046E-05 432990 152.78 432990 152.78 505.613196962332 34.727 0.87076 34.727 34.428 35.299 0 115 29 5 0.646176413352094 0.00525134476523899 0.0241313233871829 0.011307 1 7765 69.864 23.258 1 123640000 80229 34142 78808 36697 44083 76152 47189 52314 32789 5646.8 75912 32268 79018 38158 46816 74282 47491 53569 32963 6527.9 1 1 1 1 1 1 1 1 1 1 3208 1155 2825 2995 3561 3561 2004 NHSVNEEEQEEQGEGSEDEWEQVGPR 26 Phospho (STY) _NHSVNEEEQEEQGEGS(ph)EDEWEQVGPR_ NHSVNEEEQEEQGEGS(1)EDEWEQVGPR NHS(-187.26)VNEEEQEEQGEGS(187.26)EDEWEQVGPR 0 0 1 0 Q14694 Q14694 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1113.13232421875 3 1036.40932 3106.20614 29930.3116079137 1.4146 0.0014661 73705 76.389 73706 76.39 1113.13126223903 53.593 0.76693 53.593 53.235 54.002 0 103 25 6 0.971503850948013 0.00288082643802705 0.0266591777492505 5.0727E-33 1 12516 301.32 285.64 2 34312000 6074.6 5838.5 5352.4 6464.5 7238.6 5996.7 5805.2 6387.8 7066.9 5447.9 5745.4 5519 5451.5 6591.8 7215.3 6046.9 6012.6 6556.4 6919.4 5277.7 1 1 1 1 1 1 1 1 1 1 3209 1024 2826 2996 3562 3562 1748 NIELICQENEGENDPVLQR 19 Unmodified _NIELICQENEGENDPVLQR_ 0 0 0 0 Q15691 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 834.086364746094 3 757.362101 2269.06447 34106.3228180252 2.141 0.0016215 100860 76.388 100860 76.39 834.083990336153 74.122 0.60666 74.122 73.812 74.419 1.4211E-14 72 20 5 0.937773471931924 0.00837905953213029 0.17510354943028 1.3605E-11 1 17399 206.7 178.61 1 45395000 10022 10628 9002.9 8966.8 13286 10733 13865 11300 14619 25620 9479.3 10030 9177.5 9336.5 13238 10735 14107 12084 14393 24386 1 1 1 1 1 1 1 1 1 1 3210 1087 2827 2997 3563 3563 NIIGSSPVADFSAIK 15 Phospho (STY) _NIIGSS(ph)PVADFSAIK_ NIIGS(0.143)S(0.857)PVADFSAIK NIIGS(-7.79)S(7.79)PVADFS(-66.5)AIK 0 0 1 0 P42566 P42566 P42566 EPS15 Epidermal growth factor receptor substrate 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.710754394531 3 533.599039 1597.77529 38055.1788924461 2.0278 0.001082 286310 152.78 286310 152.78 686.374556333234 98.248 0.49531 98.248 97.992 98.488 0 48 16 4 0.97819926298876 0.00512896502928638 0.2041125894973 0.00014848 1 22795 105.5 86.67 3 9237300 3756.3 4814 4152.6 5633.1 6701.5 3213.8 7896.3 6062.2 5796.1 8090.7 3555.9 4552.3 4192.1 5695 6665.1 3380.3 7922.9 6214.2 5808.1 7758.7 1 1 1 1 1 1 1 1 1 1 3211 587 2828 2998 3564 3564 949 NINMDNDLEVLTSSPTR 17 Phospho (STY) _NINMDNDLEVLTSS(ph)PTR_ NINMDNDLEVLTS(0.033)S(0.682)PT(0.285)R NINMDNDLEVLT(-35.36)S(-13.19)S(3.79)PT(-3.79)R 0 0 1 0 Q9Y5T5 Q9Y5T5 Q9Y5T5 USP16 Ubiquitin carboxyl-terminal hydrolase 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.687927246094 3 666.966122 1997.87654 35936.7368404896 1.7668 0.0011784 114530 76.387 114530 76.388 743.687325253393 84.539 0.70826 84.539 84.216 84.924 -1.4211E-14 87 24 5 0.987898153009114 0.0043034026580693 0.0386451316909231 7.2041E-11 1 19730 191.22 178.73 4 28266000 5292.3 7346.7 6736.9 7511.9 5931.1 6022.3 5089.3 7949.9 8215.6 24626 5013.3 6941.1 6689.1 7679 6057.5 6173.5 5306.5 8641.7 7973.7 23372 1 1 1 1 1 1 1 1 1 1 3212 2301 2829 2999 3565 3565 4240 NIPPYFVALVPQEEELDDQK 20 Unmodified _NIPPYFVALVPQEEELDDQK_ 0 0 0 0 P12956 P12956 P12956 XRCC6 X-ray repair cross-complementing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 935.172424316406 3 782.061757 2343.16344 32388.8918672077 2.2431 0.0017542 195350 152.77 195350 152.78 935.170798389523 100.41 0.30611 100.41 100.26 100.56 1.4211E-14 38 10 7 0.887886684179112 0.0087084898966703 0.214722187375424 1.1746E-07 1 23465 152.01 135.33 1 82562000 25408 28591 28658 26852 33715 25915 47025 40169 29750 181100 24055 26999 28757 27662 34087 26538 46755 45197 30087 171460 1 1 1 1 1 1 1 1 1 1 3213 372 2830 3000 3566 3566 NISALKR 7 Phospho (STY) _NIS(ph)ALKR_ NIS(1)ALKR NIS(61.78)ALKR 0 0 1 1 Q66K14 Q66K14 Q66K14 TBC1D9B TBC1 domain family member 9B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 447.266418457031 3 294.491665 880.453167 46884.9177164038 0.51707 0.00015227 518780 152.78 518780 152.78 447.266646164191 55.102 0.43905 55.102 54.868 55.307 0 25 14 2 0.879044158590514 0.000642087109612172 0.00632887403202536 0.019855 1 12874 61.78 12.985 1 11927000 14078 10773 15161 11578 9985.1 17083 12023 12429 12975 1553.1 13325 10182 15145 11927 10468 16822 12167 12694 12763 1750.1 1 1 1 1 1 1 1 1 1 1 3214 1223 2831 3001 3567 3567 2154 NISKLSPPR 9 Phospho (STY) _NISKLS(ph)PPR_ NIS(0.04)KLS(0.96)PPR NIS(-13.83)KLS(13.83)PPR 0 0 1 1 Q6P0N0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 517.300842285156 3 364.525146 1090.55361 43794.0655652917 0.66144 0.00024111 419110 152.78 419110 152.78 517.300264580511 54.423 1.6268 54.423 53.417 55.044 0 94 55 3 0.968998636728269 0.00159418779061678 0.0287056408701095 0.025502 1 12613 52.79 27.596 2 19150000 14181 7114.7 14526 7857.3 5761 14498 6582.2 9177.8 7702.6 1603.5 13420 6725.3 14501 8129 6376.4 14172 6691.4 9460.5 7552.7 1722.3 1 1 1 1 1 1 1 1 1 1 3215 1252 2832 3002 3568 3568 2217 NISSSPSVESLPGGR 15 Phospho (STY) _NISSSPS(ph)VESLPGGR_ NISS(0.001)S(0.006)PS(0.99)VES(0.002)LPGGR NIS(-35)S(-28.65)S(-21.93)PS(21.93)VES(-26.42)LPGGR 0 0 1 0 Q92609 Q92609 Q92609 TBC1D5 TBC1 domain family member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.632690429688 3 522.910165 1565.70867 39855.8818924349 0.82258 0.00043014 146080 76.387 146080 76.388 599.297547451452 55.779 0.58619 55.779 55.364 55.95 0 46 19 4 0.875765319805526 0.00221864951726453 0.0520607193730665 0.010454 1 13008 72.883 61.978 5 10642000 12187 9264.5 11638 10339 9704.9 11781 10723 9155.2 8414.9 3095.1 11530 8758 11728 10573 9975 11718 10803 9378.4 8400.9 3126.3 1 1 1 1 1 1 1 1 1 1 3216 1606 2833 3003 3569 3569 2955 NITSSSPER 9 Phospho (STY) _NITSSS(ph)PER_ NIT(0.003)S(0.009)S(0.03)S(0.957)PER NIT(-25.04)S(-20.03)S(-15)S(15)PER 0 0 1 0 O75665 O75665 O75665 OFD1 Oral-facial-digital syndrome 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.311950683594 2 535.729336 1069.44412 39525.9720151457 1.6803 0.00090021 213880 114.58 213880 114.58 650.310596448894 31.88 0.44212 31.88 31.674 32.117 0 21 14 2 0.973405370628799 0.00101588488539806 0.0484167377759823 0.0084599 1 7130 85.729 56.773 4 8484100 14525 11193 12469 12829 7934.7 13854 7604.5 11052 11184 3547.3 13737 10583 12617 13089 8318.6 13812 7854.6 11302 10884 3596 1 1 1 1 1 1 1 1 1 1 3217 196 2834 3004 3570 3570 344 NKESKDPADETEAD 14 Unmodified _NKESKDPADETEAD_ 0 0 0 2 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 746.391906738281 3 516.893518 1547.65872 36447.9839868789 2.064 0.0010669 443350 229.16 443350 229.16 746.056864947743 35.252 0.64757 35.252 34.915 35.563 0 96 21 6 0.989402803103035 0.00837301449640889 0.0320746611505376 7.2718E-07 1 7881 150.12 141.07 1 415110000 42724 65495 44754 70714 58636 43689 71266 62700 74083 4058.8 40435 61901 45142 71854 58866 45244 72013 62279 72978 5273 1 1 1 1 1 1 1 1 1 1 3218 411 2835 3005 3571 3571 NKKSPEIHR 9 Phospho (STY) _NKKS(ph)PEIHR_ NKKS(1)PEIHR NKKS(111.31)PEIHR 0 0 1 2 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 470.025756835938 4 297.902582 1187.58122 45356.1624181058 0.59305 0.00017667 576940 171.87 576940 171.87 469.775067699456 29.567 1.211 29.567 29.34 30.551 0 146 40 5 0.899669419660956 0.0154995645054904 0.173607379158696 0.00030409 1 6570 111.31 89.849 1 450450000 52845 70688 58385 65238 97812 53454 110020 76239 75152 4157.5 50025 66746 58978 67128 97071 54399 110450 75716 75632 5679.2 1 1 1 1 1 1 1 1 1 1 3219 2257 2836 3006 3572 3572 4176 NKPGPNIESGNEDDDASFK 19 Phospho (STY) _NKPGPNIES(ph)GNEDDDASFK_ NKPGPNIES(1)GNEDDDASFK NKPGPNIES(88.33)GNEDDDAS(-88.33)FK 0 0 1 1 O60841 O60841 O60841 EIF5B Eukaryotic translation initiation factor 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 934.794189453125 3 705.295184 2112.86372 32082.1946655594 2.0972 0.0014791 324920 229.16 324920 229.16 934.792059764469 58.713 3.0439 58.713 58.376 61.42 0 303 104 6 0.989654587403428 0.00606939506525767 0.0941541965878215 1.4747E-41 3 13710 332.25 297.33 2 320380000 99795 93901 103110 90075 67133 102540 69712 90868 103550 38357 94444 88683 103200 92920 70319 102150 71764 92755 100740 38221 3 3 3 3 3 3 3 3 3 3 3220 160 2837 3007 3573;3574;3575 3573 275 NKPGPNIESGNEDDDASFK 19 Phospho (STY) _NKPGPNIES(ph)GNEDDDASFK_ NKPGPNIES(1)GNEDDDASFK NKPGPNIES(67.99)GNEDDDAS(-67.99)FK 0 0 1 1 O60841 O60841 O60841 EIF5B Eukaryotic translation initiation factor 5B MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 934.463806152344 3 705.295184 2112.86372 NaN NaN NaN NaN NaN NaN NaN NaN 61.983 1 61.983 61.483 62.483 0 NaN NaN NaN 0.00011033 1 14550 102.69 86.752 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3221 160 2837 3007 3576 3576 275 NKPLEQSVEDLSK 13 Phospho (STY) _NKPLEQS(ph)VEDLSK_ NKPLEQS(1)VEDLSK NKPLEQS(47.2)VEDLS(-47.2)K 0 0 1 1 O95466 O95466 O95466 FMNL1 Formin-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.082336425781 3 522.918549 1565.73382 36525.8302208732 2.1421 0.0011201 438240 229.16 438240 229.16 752.081235704869 62.875 0.70186 62.875 62.523 63.225 0 72 23 4 0.988585472718314 0.0032101345248014 0.0566564148877992 4.7976E-07 1 14722 148.26 98.961 2 42578000 25587 12044 27003 11812 21720 22957 27204 21417 11769 12061 24217 11377 27055 12322 22416 22517 27006 21906 12267 11852 1 1 1 1 1 1 1 1 1 1 3222 250 2838 3008 3577 3577 422 NKPLSPIK 8 Phospho (STY) _NKPLS(ph)PIK_ NKPLS(1)PIK NKPLS(112.5)PIK 0 0 1 1 P35251 P35251 P35251 RFC1 Replication factor C subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 555.341857910156 3 326.179087 975.515433 42234.8729828153 1.5739 0.00051339 702570 229.16 702570 229.16 555.341630472446 56.078 0.7997 56.078 55.713 56.513 0 98 26 5 0.94567549705179 0.0149215611585566 0.119256949180915 0.0006608 1 13068 112.5 86.939 1 229950000 103810 105210 94921 92955 89268 98899 96307 107740 103770 4248.1 98201 99322 96035 96287 91029 98985 97898 107850 102080 6493.5 1 1 1 1 1 1 1 1 1 1 3223 544 2839 3009 3578 3578 881 NKPRSPVVELSK 12 Phospho (STY) _NKPRS(ph)PVVELSK_ NKPRS(1)PVVELSK NKPRS(64.84)PVVELS(-64.84)K 0 0 1 2 P25098 P25098 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.316467285156 4 359.193259 1432.74393 42719.6160976151 1.3676 0.00049122 478500 171.87 478500 171.87 531.065606796186 52.41 0.71465 52.41 52.127 52.842 7.1054E-15 97 24 5 0.95979795800561 0.00454820144005549 0.051593063405741 4.9752E-08 1 12166 171.44 121.29 2 93981000 25785 10502 28755 8705 28631 27316 27986 21486 11584 1846.2 24410 9910.7 28782 9346.7 29038 26480 28069 21833 12126 2235.6 1 1 1 1 1 1 1 1 1 1 3224 473 2840 3010 3579 3579 787 NKSTESLQANVQR 13 Phospho (STY) _NKS(ph)TESLQANVQR_ NKS(0.976)T(0.024)ES(0.001)LQANVQR NKS(16.17)T(-16.17)ES(-32.12)LQANVQR 0 0 1 1 P26373 P26373 P26373 RPL13 60S ribosomal protein L13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.024353027344 3 518.91391 1553.7199 38718.2511677314 1.532 0.000795 294410 152.78 294420 152.78 671.689307234415 40.416 0.35827 40.416 40.21 40.568 0 27 11 3 0.950722452910171 0.00147972747553153 0.0139966375792369 1.3689E-05 1 9191 135.79 108.07 3 27738000 14379 19296 13671 20539 18738 13763 19297 18087 20750 7247.2 13604 18236 13870 20904 18725 14166 19656 18193 20413 7242.7 1 1 1 1 1 1 1 1 1 1 3225 481 2841 3011 3580 3580 797 NKTEDLEATSEHFK 14 Phospho (STY) _NKTEDLEATS(ph)EHFK_ NKTEDLEAT(0.071)S(0.929)EHFK NKT(-79.99)EDLEAT(-11.2)S(11.2)EHFK 0 0 1 1 Q9BV40 Q9BV40 Q9BV40 VAMP8 Vesicle-associated membrane protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.420959472656 3 576.92073 1727.74036 34491.8588498029 2.5812 0.0014892 397220 229.16 397220 229.16 806.084467400062 53.53 0.39175 53.53 53.353 53.744 0 29 12 3 0.92476886296117 0.000897774484140649 0.00846897914370615 3.8552E-06 1 12505 138.08 118.25 3 11341000 16780 7510 19457 8844.4 11552 17353 10578 12781 9444.5 8541.9 15888 7102 19340 9136.4 12175 16973 10784 13255 9367 8339 1 1 1 1 1 1 1 1 1 1 3226 1838 2842 3012 3581 3581 3366 NLALSRESLVV 11 Phospho (STY) _NLALS(ph)RESLVV_ NLALS(0.998)RES(0.002)LVV NLALS(27.22)RES(-27.22)LVV 0 0 1 1 Q86X29 Q86X29 Q86X29 LSR Lipolysis-stimulated lipoprotein receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.416320800781 2 640.834135 1279.65372 36761.724365151 1.2993 0.00083266 178800 114.58 178800 114.58 755.416426378038 86.287 0.46215 86.287 86.043 86.505 1.4211E-14 42 15 3 0.858127831444984 0.00332681727314836 0.145085425246212 0.0074408 1 20139 86.262 71.251 2 24538000 5718.2 27097 6820.1 26224 6963 5925.1 5723.6 14320 29717 13151 5415 25592 6803.5 26653 7062.8 6975 6542.7 14435 28304 12714 1 1 1 1 1 1 1 1 1 1 3227 1395 2843 3013 3582 3582 2536 NLANTVTEEILEK 13 Unmodified _NLANTVTEEILEK_ 0 0 0 0 O60506 O60506 O60506 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.042907714844 3 491.931356 1472.77224 40323.4875324626 1.7636 0.00086756 310560 152.78 310560 152.78 644.706582918997 99.471 0.16996 99.471 99.352 99.522 0 17 5 4 0.96164197798472 0.000585730288237812 0.0130591628356919 2.2011E-07 1 23123 164.81 131.59 1 19654000 9588.8 8752.7 9684 9661.6 9202.8 10129 8881.1 9996.8 9289.8 15294 9073.8 8273.5 9739.3 9872.3 9363.3 10159 9066.9 10493 9149 14632 1 1 1 1 1 1 1 1 1 1 3228 148 2844 3014 3583 3583 NLDDGIDDER 10 Unmodified _NLDDGIDDER_ 0 0 0 0 Q9H361;P11940 Q9H361 Q9H361 PABPC3;PABPC1 Polyadenylate-binding protein 3;Polyadenylate-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.837585449219 2 581.254557 1160.49456 37088.0164153095 1.2996 0.00075538 197130 114.58 197130 114.58 695.836007777081 45.346 0.51855 45.346 45.007 45.526 0 58 17 4 0.953948586219138 0.00242573623025874 0.090692201501121 8.0056E-14 1 10393 228.64 165.22 1 127600000 43978 44205 45769 42606 35034 44697 40605 45173 50056 7459.3 41621 41750 45862 43877 36274 44729 41323 45518 48989 8069.3 1 1 1 1 1 1 1 1 1 1 3229 367 2845 3015 3584 3584 NLDDTIDDEK 10 Unmodified _NLDDTIDDEK_ 0 0 0 0 P0CB38;Q13310 P0CB38 P0CB38 PABPC4L;PABPC4 Polyadenylate-binding protein 4-like;Polyadenylate-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.433227539063 2 589.26459 1176.51463 35476.9734982537 2.469 0.0014549 388900 229.16 388900 229.17 818.430767458145 57.363 0.37398 57.363 57.16 57.534 0 35 12 4 1 0.00052833557725944 0.0481181051743616 0.0011745 1 13455 108.35 64.836 1 17152000 14374 16885 13898 16290 20375 14428 19550 16557 16141 14385 13600 15947 14099 16732 20279 14599 19846 16959 16071 13929 1 1 1 1 1 1 1 1 1 1 3230 350 2846 3016 3585 3585 NLEQILNGGESPKQK 15 Phospho (STY) _NLEQILNGGES(ph)PKQK_ NLEQILNGGES(1)PKQK NLEQILNGGES(108.71)PKQK 0 0 1 1 Q13033 Q13033 Q13033 STRN3 Striatin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.588928222656 4 434.466009 1733.83493 41743.9052348261 1.6264 0.0007066 395590 171.87 395590 171.87 606.587002030248 80.838 0.46868 80.838 80.58 81.049 0 32 15 3 0.632049441702306 0.000573444424368223 0.00755417440811997 0.00016664 1 18937 108.71 82.235 1 10077000 3804.5 5178.4 3528.6 4061.3 4148 4102.4 4752.2 5003.9 3867.3 4482.1 3599 4885.5 3577.7 4238.9 4180.6 4130 4784.1 5119.4 3853.4 4336.3 1 1 1 1 1 1 1 1 1 1 3231 919 2847 3017 3586 3586 1515 NLGSINTELQDVQR 14 Phospho (STY) _NLGS(ph)INTELQDVQR_ NLGS(1)INTELQDVQR NLGS(33.82)INT(-33.82)ELQDVQR 0 0 1 0 O75396 O75396 O75396 SEC22B Vesicle-trafficking protein SEC22b MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 632.652709960938 3 556.264719 1665.77233 38925.8455529905 1.7723 0.00098589 137320 76.388 137320 76.389 632.652268676162 78.157 0.62267 78.157 77.867 78.49 0 78 21 5 0.995796966192255 0.00406286663525805 0.0728185804818541 1.9887E-10 1 18291 177.07 164.87 2 73624000 4893.8 2035.2 4693.1 4501.4 5105.6 5129 5396.8 5304.1 4743.4 4346.2 4630.1 1936.6 4742.8 4481.4 5160.3 5123.4 5461.6 5444.6 4708 4215.2 1 1 1 1 1 1 1 1 1 1 3232 183 2848 3018 3587 3587 319 NLGSPTQVISKPESK 15 Phospho (STY) _NLGSPT(ph)QVISKPESK_ NLGS(0.297)PT(0.701)QVIS(0.003)KPESK NLGS(-3.73)PT(3.73)QVIS(-24.06)KPES(-69.73)K 0 0 1 1 Q9BSI4 Q9BSI4 Q9BSI4 TINF2 TERF1-interacting nuclear factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.777160644531 3 555.613349 1663.81822 36230.4411615641 1.0106 0.00056153 412450 229.16 412450 229.16 785.110848698108 65.749 0.53389 65.749 65.454 65.988 0 42 17 3 0.90251557526834 0.00242338345853216 0.0406188061739504 0.00022396 1 15444 119.27 105.16 4 11741000 13136 13031 13376 12882 12353 13512 12254 13156 13918 13327 12431 12309 13442 13246 12596 13536 12524 13611 13663 12854 1 1 1 1 1 1 1 1 1 1 3233 1816 2849 3019 3588 3588 4753 NLIDEDGNNQWPEGLK 16 Unmodified _NLIDEDGNNQWPEGLK_ 0 0 0 0 O00410 O00410 O00410 IPO5 Importin-5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.402099609375 3 614.626995 1840.85916 36683.0553627257 1.8491 0.0011365 248570 152.77 248570 152.78 767.401394143095 82.978 0.61359 82.978 82.768 83.382 0 46 20 3 0.632709556675187 0.00112519031362338 0.0064461240440382 0.00011651 1 19427 109.35 82.017 1 7908900 7809 7249.3 7447.2 6906.7 9168 8004.2 7179.8 7166.2 6384 13514 7388 6846.2 7537 7130.1 9173.2 7989 7382.1 7627.9 6332.9 12891 1 1 1 1 1 1 1 1 1 1 3234 44 2850 3020 3589 3589 NLLSLFEDTLDPT 13 Unmodified _NLLSLFEDTLDPT_ 0 0 0 0 Q99640 Q99640 Q99640 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.956787109375 2 739.374672 1476.73479 36166.4369869127 1.7662 0.0013059 154970 114.58 154970 114.58 853.956012494568 104.06 0.14472 104.06 104 104.14 -1.4211E-14 9 4 3 0.509670321967037 0.000270203343199346 0.0109959251960314 0.012943 1 24521 94.801 75.704 1 2314600 1677.2 1872.6 2014.3 1414 2892.9 1807.6 2361.3 1668.9 1553.6 15175 1588.3 1766.4 2018.7 1486.2 2875.6 1821.1 2407 2136.7 1567.2 14328 1 1 1 1 1 1 1 1 1 1 3235 1780 2851 3021 3590 3590 NLNLVSSTASIK 12 Phospho (STY) _NLNLVSS(ph)TASIK_ NLNLVS(0.006)S(0.951)T(0.042)ASIK NLNLVS(-21.74)S(13.51)T(-13.51)AS(-39.75)IK 0 0 1 0 Q9NRY4 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.670776367188 3 442.893675 1325.6592 41763.0172197175 1.9205 0.00085057 344950 152.78 344950 152.78 595.669191317857 77.226 0.36938 77.226 76.998 77.368 0 34 12 3 0.712875123543021 0.00183461681685065 0.0537771799867817 0.0035232 1 18123 91.07 62.901 4 9950500 5168.7 6105 5611 5049.2 6521.8 6459.1 5286.3 6555.6 6905.9 4535 4892.6 5761.2 5633.3 5271.5 6548.6 6421.1 5484.7 6708.7 6745.4 4422 1 1 1 1 1 1 1 1 1 1 3236 2019 2852 3022 3591 3591 3669 NLNNSNLFSPVNR 13 Phospho (STY) _NLNNSNLFS(ph)PVNR_ NLNNSNLFS(1)PVNR NLNNS(-103.52)NLFS(103.52)PVNR 0 0 1 0 P52948 P52948 P52948 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 899.449890136719 2 784.864486 1567.71442 33135.2341819396 1.936 0.0015195 145990 114.58 145990 114.58 899.446082532059 72.671 0.58572 72.671 72.369 72.955 0 70 19 5 0.918338248918227 0.0017994345556429 0.0764622687793055 9.426E-23 1 17025 268.44 198.89 2 53329000 23865 27897 20992 27040 15573 22926 17100 23181 28131 45524 22572 26349 21239 27750 16155 23252 17635 24614 27289 43403 1 1 1 1 1 1 1 1 1 1 3237 699 2853 3023 3592 3592 1174;1175 NLNNSNLFSPVNR 13 Phospho (STY) _NLNNS(ph)NLFSPVNR_ NLNNS(0.993)NLFS(0.007)PVNR NLNNS(21.53)NLFS(-21.53)PVNR 0 0 1 0 P52948 P52948 P52948 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 899.444763183594 2 784.864486 1567.71442 32802.3686820152 1.6614 0.001304 145990 114.58 145990 114.58 899.442858957291 73.62 0.48391 73.62 73.328 73.812 0 31 16 3 0.663321344863783 0.000881396107430234 0.0303290873493791 8.5725E-07 2 17292 146.67 110.94 2 10286000 16889 21412 20252 20810 16050 17557 17531 22059 24479 55965 15994 20223 20150 21351 16563 17905 17965 23639 23859 53208 2 2 2 2 2 2 2 2 2 2 3238 699 2853 3023 3593;3594 3594 1174;1175 NLQPLMRSPISR 12 Oxidation (M),Phospho (STY) _NLQPLM(ox)RS(ph)PISR_ NLQPLM(1)RSPISR NLQPLMRS(0.935)PIS(0.065)R NLQPLM(51.71)RSPISR NLQPLMRS(11.61)PIS(-11.61)R 0 1 1 1 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.641174316406 3 503.253209 1506.7378 42406.7376958171 1.4662 0.00073788 151790 76.387 151790 76.388 579.64023417911 51.437 0.4657 51.437 51.195 51.66 0 44 15 4 0.706860686938891 0.002126167246353 0.0131122063742893 0.052546 1 11963 51.706 28.827 2 15486000 10017 10662 10144 10517 10295 9376.3 8017 9846.5 10689 2417.2 9479.2 10071 10205 10789 10409 9459.7 8343.2 9931.4 10433 2504 1 1 1 1 1 1 1 1 1 1 3239 1353 2854 3024 3595 3595 167 2457 NLQPLMRSPISR 12 Phospho (STY) _NLQPLMRS(ph)PISR_ NLQPLMRS(1)PISR NLQPLMRS(39.18)PIS(-39.18)R 0 0 1 1 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.309997558594 3 497.921571 1490.74288 41213.7598579071 1.8211 0.00090676 153410 76.387 153410 76.388 574.308926624248 63.957 0.57951 63.957 63.692 64.271 7.1054E-15 69 19 5 0.917510347498351 0.00199108172141564 0.0287981488589178 3.7737E-07 1 14989 140.6 102.83 2 43737000 8689.5 9695.5 10088 9190 6540 7631.1 7078.3 9108.3 10397 2747.2 8227.7 9156.1 10035 9441.8 6857 7742.4 7270.1 9161.9 10118 2797.6 1 1 1 1 1 1 1 1 1 1 3240 1353 2854 3025 3596 3596 2457 NLQTVNVDEN 10 Unmodified _NLQTVNVDEN_ 0 0 0 0 P62899 P62899 P62899 RPL31 60S ribosomal protein L31 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.857788085938 2 573.275292 1144.53603 37488.1421025449 1.7421 0.0009987 199870 114.58 199870 114.58 687.856864640081 52.519 0.51622 52.519 52.238 52.755 0 53 17 4 0.97172621339812 0.00307633356600752 0.0926187699337868 9.0673E-14 1 12210 225.72 215.97 1 41257000 24215 21812 19426 23994 18425 24481 17513 19357 19033 7308.2 22896 20618 19822 24511 18745 24466 17912 19835 18716 7329.5 1 1 1 1 1 1 1 1 1 1 3241 773 2855 3026 3597 3597 NLSDIGWPVFEIPSPRPSK 19 Phospho (STY) _NLSDIGWPVFEIPS(ph)PRPSK_ NLSDIGWPVFEIPS(0.992)PRPS(0.008)K NLS(-35.75)DIGWPVFEIPS(21)PRPS(-21)K 0 0 1 1 Q9Y6R4 Q9Y6R4 Q9Y6R4 MAP3K4 Mitogen-activated protein kinase kinase kinase 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 893.481567382813 3 740.368066 2218.08237 33592.0966477491 1.677 0.0012416 206350 152.78 206350 152.78 893.479100953381 100.63 0.1657 100.63 100.56 100.73 0 15 5 4 0.984550953310803 0.00143771700417236 0.0228963343584513 0.011939 1 23564 68.942 52.999 3 43902000 28389 30874 28944 31308 17667 31287 17943 28353 30239 100410 26866 29169 28975 32119 18610 31514 18588 31579 29316 95201 1 1 1 1 1 1 1 1 1 1 3242 2319 2856 3027 3598 3598 4274 NLSDSEKELYIQHAK 15 Phospho (STY) _NLS(ph)DSEKELYIQHAK_ NLS(0.936)DS(0.064)EKELYIQHAK NLS(11.67)DS(-11.67)EKELY(-68.87)IQHAK 0 0 1 1 Q00059 Q00059 Q00059 TFAM Transcription factor A, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.343078613281 4 464.471291 1853.85606 38658.369618273 1.9293 0.0008961 370040 171.87 370040 171.87 636.594315218475 65.361 0.51905 65.361 65.054 65.573 0 41 17 3 0.569253196117602 0.00100589189819896 0.0321992093792092 0.00014201 1 15364 113.17 82.204 3 10206000 5734.6 6497.3 5937.6 6004.4 5379.1 4890.8 5054 5698.6 6262.5 3529.6 5427.2 6135 5959.7 6177.3 5488.2 4968.7 5193.2 5791.2 6127.9 3455.4 1 1 1 1 1 1 1 1 1 1 3243 820 2857 3028 3599 3599 1315 NLSEEGLLR 9 Phospho (STY) _NLS(ph)EEGLLR_ NLS(1)EEGLLR NLS(90.73)EEGLLR 0 0 1 0 Q12789 Q12789 Q12789 GTF3C1 General transcription factor 3C polypeptide 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.34765625 2 555.763178 1109.5118 37887.9828067825 1.7851 0.00099208 206170 114.58 206170 114.58 670.345830535698 69.628 0.53139 69.628 69.346 69.878 0 48 17 4 0.96170869290668 0.0018436110744293 0.0680349755327619 0.0059709 1 16319 90.731 57.673 1 16491000 10486 10262 10109 9389.8 12411 10570 14742 12268 10143 7053.3 9921.3 9688.9 10234 9713.3 12488 10577 14769 12453 10204 6925.5 1 1 1 1 1 1 1 1 1 1 3244 899 2858 3029 3600 3600 1484 NLSESPVITK 10 Phospho (STY) _NLSES(ph)PVITK_ NLS(0.008)ES(0.99)PVIT(0.001)K NLS(-20.68)ES(20.68)PVIT(-29.5)K 0 0 1 0 Q12830 Q12830 Q12830 BPTF Nucleosome-remodeling factor subunit BPTF MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 813.952941894531 2 584.286486 1166.55842 35211.9485346442 1.6525 0.00096555 392210 229.16 392210 229.16 813.448721123124 62.317 0.45815 62.317 62.065 62.523 7.1054E-15 36 15 3 0.963632983703023 0.000624907337679889 0.0403502332065625 0.017094 1 14641 68.676 48.512 3 9343900 15871 19809 17955 20508 17607 16488 18570 17391 21729 17048 15026 18717 17957 20949 17905 16750 18942 17923 21306 16455 1 1 1 1 1 1 1 1 1 1 3245 904 2859 3030 3601 3601 1488 NLSFEIK 7 Phospho (STY) _NLS(ph)FEIK_ NLS(1)FEIK NLS(104.79)FEIK 0 0 1 0 Q05209 Q05209 Q05209 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.884216308594 2 465.720251 929.425949 37870.8437077312 2.2371 0.0010418 492060 229.16 492060 229.16 694.883244485052 83.744 1.1967 83.744 83.382 84.579 0 128 41 5 0.998808269618022 0.00675480706784442 0.326441079324073 0.0021653 1 19538 104.79 35.902 1 252850000 27313 30839 26386 31553 18050 24711 19644 25252 33290 7818.5 25842 29137 26524 32244 18845 25096 20293 25545 32269 7946.5 1 1 1 1 1 1 1 1 1 1 3246 868 2860 3031 3602 3602 1409 NLSFNELYPSGTLK 14 Phospho (STY) _NLS(ph)FNELYPSGTLK_ NLS(1)FNELYPSGTLK NLS(50.1)FNELY(-50.1)PS(-71.94)GT(-83.97)LK 0 0 1 0 Q8WYP5 Q8WYP5 Q8WYP5 AHCTF1 Protein ELYS MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.705810546875 3 554.930678 1661.7702 37416.6878268543 2.0166 0.0011191 275310 152.78 275310 152.78 707.705841811454 96.503 0.7196 96.503 96.231 96.95 0 74 24 4 0.903984176395034 0.00641949749816384 0.068483156249633 6.4321E-05 1 22417 126.01 93.014 4 26337000 7266 7232.6 7351.2 5549.6 5970.1 8217.2 6944.6 6950.6 7318.9 12668 6875.8 6822.8 7382.2 5843.7 6154.1 8125.4 7032.4 7402.7 7205.7 12089 1 1 1 1 1 1 1 1 1 1 3247 1585 2861 3032 3603 3603 2913 NLSGGVLMGFMLNR 14 Phospho (STY) _NLS(ph)GGVLMGFMLNR_ NLS(1)GGVLMGFMLNR NLS(145.43)GGVLMGFMLNR 0 0 1 0 Q7Z401 Q7Z401 Q7Z401 DENND4A C-myc promoter-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.638610839844 3 530.2507 1587.73027 40931.6943410199 1.1515 0.0006106 144060 76.388 144060 76.388 606.638444670192 101.94 0.16782 101.94 101.87 102.04 0 15 5 4 0.967775288725584 0.0013331663071192 0.0248840917578637 7.244E-07 1 24012 145.43 129.8 1 25678000 1940.9 2312.4 2824.6 2735.7 2213.6 1744.1 1290.8 2181.1 2151.9 10873 1839.9 2186.8 2784.2 2767.1 2270.2 1818.5 1381.8 2498.5 2086.7 10289 1 1 1 1 1 1 1 1 1 1 3248 1333 2862 3033 3604 3604 2404 NLSGSTLYPVSNIPR 15 Phospho (STY) _NLS(ph)GSTLYPVSNIPR_ NLS(0.62)GS(0.364)T(0.017)LYPVSNIPR NLS(2.31)GS(-2.31)T(-15.69)LY(-91.43)PVS(-71.24)NIPR 0 0 1 0 Q2KHR2 Q2KHR2 Q2KHR2 RFX7 DNA-binding protein RFX7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 963.998474121094 2 849.416552 1696.81855 32195.7545861308 1.7278 0.0014676 134890 114.58 134890 114.58 964.49836378014 80.538 0.46687 80.538 80.343 80.81 0 40 15 3 0.871503917824377 0.00137104101627995 0.0291511675442831 4.8421E-16 1 18841 240.45 212.09 5 15670000 11023 9207.1 12276 8450.5 11345 11724 12504 12464 9590.2 29167 10435 8693.3 12280 8775.5 11581 11670 12592 13352 9586.2 27753 1 1 1 1 1 1 1 1 1 1 3249 1120 2863 3034 3605 3605 1946 NLSLSSSTPPLPSPGR 16 Phospho (STY) _NLS(ph)LSSSTPPLPSPGR_ NLS(0.544)LS(0.453)S(0.003)STPPLPSPGR NLS(0.79)LS(-0.79)S(-23.3)S(-33.47)T(-33.47)PPLPS(-89.08)PGR 0 0 1 0 O43516 O43516 O43516 WIPF1 WAS/WASL-interacting protein family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 959.995788574219 2 845.414009 1688.81347 31846.6451482768 1.5247 0.001289 135530 114.58 135540 114.58 959.996900770666 75.637 0.71754 75.637 75.286 76.004 1.4211E-14 72 24 4 0.84526753150468 0.0019595051573282 0.176404990404645 1.4268E-07 1 17724 170.79 130.88 6 18708000 11708 7437.7 13701 7859.2 12925 13805 12545 13027 9042.9 30981 11086 7028.6 13672 8139.4 13153 13621 12692 14030 9071.1 29474 1 1 1 1 1 1 1 1 1 1 3250 116 2864 3035 3606 3606 202 NLSNEELTK 9 Phospho (STY) _NLS(ph)NEELTK_ NLS(0.994)NEELT(0.006)K NLS(22.56)NEELT(-22.56)K 0 0 1 0 Q0JRZ9 Q0JRZ9 Q0JRZ9 FCHO2 F-BAR domain only protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.416870117188 2 564.252643 1126.49073 35269.0110911333 2.2482 0.0012685 406140 229.16 406140 229.16 793.415074913221 57.488 0.77377 57.488 57.19 57.963 -7.1054E-15 67 26 4 0.908677408081211 0.0121522235795971 0.98634452772022 6.9284E-06 1 13451 147.02 82.11 2 95086000 73863 130040 68947 131760 82472 67935 90966 98125 145940 28847 69875 122860 69890 134150 83066 71377 93693 98126 141670 29434 1 1 1 1 1 1 1 1 1 1 3251 897 2865 3036 3607 3607 1481 NLSPGAVESDVR 12 Phospho (STY) _NLS(ph)PGAVESDVR_ NLS(1)PGAVESDVR NLS(48.99)PGAVES(-48.99)DVR 0 0 1 0 P53621 P53621 P53621 COPA Coatomer subunit alpha;Xenin;Proxenin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.883117675781 2 662.300656 1322.58676 34705.1788072175 1.5395 0.0010196 173010 114.58 173010 114.58 776.882306619365 64.268 0.81164 64.268 63.811 64.622 0 87 27 4 0.789094613771797 0.00145016042193339 0.0641629361256429 8.2669E-08 1 15042 171.44 123.57 2 54585000 16859 19028 16601 18401 19253 17471 22490 17713 19656 18599 15952 17971 16769 18917 19425 17592 22660 18318 19514 17923 1 1 1 1 1 1 1 1 1 1 3252 704 2866 3037 3608 3608 1182 NLSSDEATNPISR 13 Phospho (STY) _NLS(ph)SDEATNPISR_ NLS(0.499)S(0.499)DEAT(0.001)NPISR NLS(0)S(0)DEAT(-26.62)NPIS(-89.5)R 0 0 1 0 Q7Z417 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 856.907836914063 2 742.32486 1482.63517 36749.5596714273 0.74146 0.00055041 154360 114.58 154360 114.58 856.906886418456 51.786 0.40788 51.786 51.575 51.983 0 23 13 2 0.95433794166384 0.000339456185295642 0.00211300191051524 1.0118E-10 1 12053 197.73 166.01 4 26959000 12808 17278 13161 17603 22539 13682 23071 18261 16681 14035 12121 16323 13348 17992 22320 13973 23284 18563 16730 13638 1 1 1 1 1 1 1 1 1 1 3253 1335 2867 3038 3609 3609 2408;2409 NLTMSPLHK 9 Phospho (STY) _NLTMS(ph)PLHK_ NLT(0.001)MS(0.999)PLHK NLT(-28.96)MS(28.96)PLHK 0 0 1 0 O14686 O14686 O14686 KMT2D Histone-lysine N-methyltransferase 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 526.955139160156 3 374.17887 1119.51478 43015.5133185661 1.0668 0.00039919 408290 152.78 408300 152.78 526.954158226799 65.223 0.54816 65.223 64.966 65.515 0 57 18 4 0.987317892518953 0.00244019250902892 0.0543840947240699 0.00037051 1 15303 105.03 52.782 2 24701000 9224 10576 9246.5 9189.2 7930 8833.6 8915.1 9268.2 9416.6 1442.4 8728.3 9983.2 9295.1 9514.1 8139.5 8878.4 9041.2 9323.3 9270.1 1572.7 1 1 1 1 1 1 1 1 1 1 3254 63 2868 3039 3610 3610 105 NLVSPAYCTQESR 13 Phospho (STY) _NLVS(ph)PAYCTQESR_ NLVS(1)PAYCTQESR NLVS(37.44)PAY(-86.95)CT(-37.44)QES(-82.22)R 0 0 1 0 Q9NUQ3 Q9NUQ3 Q9NUQ3 TXLNG Gamma-taxilin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 917.425720214844 2 802.842362 1603.67017 32898.1340154665 1.319 0.001059 142720 114.58 142720 114.58 917.925880822149 55.088 0.41155 55.088 54.868 55.279 -7.1054E-15 34 13 3 0.898386563156911 0.000571282929698932 0.00682312850170432 1.7349E-07 1 12860 170.09 142.07 4 12967000 16487 21326 14860 17128 10639 14579 11721 14952 20995 11981 15595 20122 15007 17802 11070 14754 12133 15345 20322 11628 1 1 1 1 1 1 1 1 1 1 3255 2040 2869 3040 3611 3611 3704 NMGGPYGGGNYGPGGSGGSGGYGGR 25 Oxidation (M),Phospho (STY) _NM(ox)GGPYGGGNYGPGGS(ph)GGSGGYGGR_ NM(1)GGPYGGGNYGPGGSGGSGGYGGR NMGGPYGGGNYGPGGS(0.943)GGS(0.057)GGYGGR NM(117.01)GGPYGGGNYGPGGSGGSGGYGGR NMGGPY(-77.43)GGGNY(-48.09)GPGGS(12.18)GGS(-12.18)GGY(-60.06)GGR 0 1 1 0 P22626 P22626 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.347900390625 3 762.627051 2284.85932 34743.2245101089 1.9168 0.0014618 100160 76.386 100160 76.388 839.347879089255 44.948 0.58361 44.948 44.652 45.236 0 63 19 5 0.856156347677965 0.00303384218538027 0.0257088923961277 5.7268E-05 1 10330 117.01 101.49 5 17124000 12596 10632 13069 9574.8 17392 13234 15954 14334 12397 8850.4 11921 10037 13183 9954.4 17371 13132 16212 14602 12383 8665.4 1 1 1 1 1 1 1 1 1 1 3256 459 2870 3041 3612 3612 63 753 NMITGTSQADCAVLIVAAGVGEFEAGISK 29 Oxidation (M) _NM(ox)ITGTSQADCAVLIVAAGVGEFEAGISK_ NM(1)ITGTSQADCAVLIVAAGVGEFEAGISK NM(96.12)ITGTSQADCAVLIVAAGVGEFEAGISK 0 1 0 0 Q5VTE0;P68104;Q05639 Q5VTE0 Q5VTE0 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.946533203125 4 732.113766 2924.42596 33523.2337064298 1.3977 0.0010233 156510 114.58 156510 114.58 846.945897325224 102.2 0.1754 102.2 102.1 102.28 0 13 5 4 0.993463492477068 0.000925243946807036 0.0165026267178296 0.0027302 1 24084 96.123 66.987 1 46500000 3180.7 4264.7 4464.9 5520.3 5101.4 5614.5 5726.2 6094.1 4188.2 26576 3014.6 4035.8 4431 5592.9 5146.8 5679.6 5756.6 6895.1 4197.8 25165 1 1 1 1 1 1 1 1 1 1 3257 788 2871 3042 3613 3613 109 NMITGTSQADCAVLIVAAGVGEFEAGISK 29 Unmodified _NMITGTSQADCAVLIVAAGVGEFEAGISK_ 0 0 0 0 Q5VTE0;P68104;Q05639 Q5VTE0 Q5VTE0 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1123.92492675781 3 970.484291 2908.43104 29764.3554096189 0.43327 0.00042048 157420 152.78 157420 152.78 1123.59581734385 102.63 0.37902 102.63 102.42 102.8 0 29 12 4 0.950224155546164 0.0101004013309468 0.157005208083935 7.1488E-08 1 24184 164.55 146.45 1 52023000 10242 12146 11648 12482 11916 13681 13953 15241 14344 45216 9696.4 11475 11655 12815 12106 13765 14115 16590 14137 42929 1 1 1 1 1 1 1 1 1 1 3258 788 2871 3043 3614 3614 NMITGTSQADCAVLIVAAGVGEFEAGISK 29 Unmodified _NMITGTSQADCAVLIVAAGVGEFEAGISK_ 0 0 0 0 Q5VTE0;P68104;Q05639 Q5VTE0 Q5VTE0 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 842.947998046875 4 728.115037 2908.43104 34105.0065980996 1.4763 0.0010749 157370 114.58 157370 114.58 842.946670461479 102.63 0.29165 102.63 102.42 102.71 -1.4211E-14 25 9 5 0.987202871931425 0.00279962152428353 0.0387951810074387 7.8711E-05 1 24195 108.72 82.715 1 46941000 3054.9 4387.9 5405.8 4317.9 4381.8 4456.4 5147.5 5544.7 6061.7 25383 2899.5 4144.7 5297.1 4440 4518.9 4522.1 5228 6284.4 5942.3 24029 1 1 1 1 1 1 1 1 1 1 3259 788 2871 3043 3615 3615 NMPGLSAATLASLGGTSSR 19 Oxidation (M),Phospho (STY) _NM(ox)PGLSAATLASLGGTS(ph)SR_ NM(1)PGLSAATLASLGGTSSR NMPGLSAATLAS(0.002)LGGT(0.184)S(0.499)S(0.315)R NM(102.72)PGLSAATLASLGGTSSR NMPGLS(-80.15)AAT(-55.66)LAS(-23.69)LGGT(-4.34)S(2.01)S(-2.01)R 0 1 1 0 Q32MZ4 Q32MZ4 Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.351257324219 3 629.62744 1885.86049 36547.308401306 1.696 0.0010679 121320 76.387 121320 76.389 706.349268586176 78.584 0.66141 78.584 78.234 78.895 0 68 22 4 0.769175807532457 0.00316195523648927 0.0423700950977743 6.998E-05 1 18402 102.72 82.065 6 14030000 5271.5 7641.1 6068.8 7619.8 7482.6 6556.5 8162 6954.4 7101.8 10669 4991.2 7218.1 6083.6 7807.9 7518.5 6644.5 8246.5 7281.8 7052.3 10207 1 1 1 1 1 1 1 1 1 1 3260 1125 2872 3044 3616 3616 152 1961;1962 NMPGLSAATLASLGGTSSR 19 Phospho (STY) _NMPGLSAATLASLGGTSS(ph)R_ NMPGLSAATLASLGGT(0.074)S(0.096)S(0.83)R NMPGLS(-164.19)AAT(-116.18)LAS(-57.83)LGGT(-10.51)S(-9.38)S(9.38)R 0 0 1 0 Q32MZ4 Q32MZ4 Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.684875488281 3 624.295802 1869.86558 37041.6346522605 1.1736 0.00073265 122360 76.387 122360 76.388 701.017923469511 91.3 0.54191 91.3 91.026 91.568 0 63 18 5 0.981905345338242 0.0016599521044645 0.0139813435316328 2.5205E-16 1 21244 235.19 222.05 6 37575000 2777.3 2043.3 3772.4 2875.1 2323.7 3626.5 2094.2 3303.6 2198.7 18159 2631.8 1935 3723.2 2913.3 2440.5 3631.6 2145.6 3873.4 2165.1 17175 1 1 1 1 1 1 1 1 1 1 3261 1125 2872 3045 3617 3617 1961;1962 NMTVEQLLTGSPTSPTVEPEKPTR 24 Phospho (STY) _NMTVEQLLTGSPTS(ph)PTVEPEKPTR_ NMTVEQLLTGSPT(0.027)S(0.968)PT(0.006)VEPEKPTR NMT(-139.61)VEQLLT(-93.68)GS(-45.7)PT(-15.59)S(15.59)PT(-22.3)VEPEKPT(-52.14)R 0 0 1 1 Q9C0C9 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1051.21398925781 3 898.101497 2691.28266 31547.2161767503 1.7347 0.001558 170110 152.78 170110 152.78 1051.21077622979 88.861 0.45886 88.861 88.596 89.055 0 50 15 4 0.956358965895701 0.00271124022620686 0.0230247197119681 3.32E-12 1 20743 190.48 170.1 7 11613000 3685.8 4759.8 3276.5 5497 4626.5 3828.4 4457.3 5480.7 6359.7 28323 3486.2 4500.7 3339 5572.3 4614.7 3985.9 4597.4 6286.9 6194.4 26796 1 1 1 1 1 1 1 1 1 1 3262 1886 2873 3046 3618 3618 3438 NNASTDYDLSDK 12 Unmodified _NNASTDYDLSDK_ 0 0 0 0 P39023 P39023 P39023 RPL3 60S ribosomal protein L3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.45947265625 2 671.791503 1341.56845 33161.9418502323 2.6026 0.0017484 341120 229.16 341130 229.17 900.954731505761 49.665 0.50101 49.665 49.453 49.954 0 46 16 4 0.983612557239721 0.00135072498914877 0.0174136711355757 3.5837E-07 1 11509 169.82 134.38 1 29555000 33220 32670 38339 31741 28505 36978 31103 35275 37275 10686 31454 30857 38196 32732 29550 36830 31704 35771 36517 10878 1 1 1 1 1 1 1 1 1 1 3263 565 2874 3047 3619 3619 NNASTDYDLSDK 12 Unmodified _NNASTDYDLSDK_ 0 0 0 0 P39023 P39023 P39023 RPL3 60S ribosomal protein L3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 601.306884765625 3 448.196761 1341.56845 40558.8364869737 2.0369 0.00091292 340870 152.77 340870 152.78 600.971798982547 49.668 0.50024 49.668 49.425 49.925 7.1054E-15 45 16 4 0.988341025861197 0.00327792273975887 0.0704778833647845 9.4455E-08 1 11547 141.37 117.77 1 26316000 21714 15529 21043 17544 16746 21459 15430 18986 19133 5495.3 20545 14681 21173 17953 17233 21314 15871 19306 18722 5613.9 1 1 1 1 1 1 1 1 1 1 3264 565 2874 3047 3620 3620 NNCPFSADENYRPLAK 16 Phospho (STY) _NNCPFS(ph)ADENYRPLAK_ NNCPFS(1)ADENYRPLAK NNCPFS(113.95)ADENY(-113.95)RPLAK 0 0 1 1 Q15154 Q15154 Q15154 PCM1 Pericentriolar material 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 812.39404296875 3 659.283785 1974.82953 33050.3952695138 2.0937 0.0013803 231730 152.78 231730 152.78 812.393617376022 66.327 0.49382 66.327 66.079 66.573 0 60 16 5 0.986216456433128 0.00355175789763828 0.0848336659987226 4.5346E-07 1 15554 147.9 124.72 2 31355000 12869 25471 14094 25614 14711 14576 13480 18906 25984 12386 12182 24062 14127 26113 14887 15180 14123 19169 25108 12100 1 1 1 1 1 1 1 1 1 1 3265 1062 2875 3048 3621 3621 1835 NNSFTAPSTVGK 12 Phospho (STY) _NNS(ph)FTAPSTVGK_ NNS(0.755)FT(0.245)APSTVGK NNS(4.89)FT(-4.89)APS(-48.33)T(-57.44)VGK 0 0 1 0 O95453 O95453 O95453 PARN Poly(A)-specific ribonuclease PARN MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.955505371094 2 651.789924 1301.5653 32847.2756044133 2.1408 0.0013953 351590 229.16 351590 229.17 880.953104927628 56.493 0.47351 56.493 56.249 56.722 0 45 15 4 0.989616264472147 0.00330570130711846 0.0984896767277983 6.0549E-11 1 13177 196.41 162.49 4 48347000 40986 22117 40129 22272 49691 39116 49999 37518 19805 9109.1 38780 20894 40574 23130 49838 38453 50053 37970 20823 9445.6 1 1 1 1 1 1 1 1 1 1 3266 249 2876 3049 3622 3622 421 NNSLNELMK 9 Phospho (STY) _NNS(ph)LNELMK_ NNS(1)LNELMK NNS(92.3)LNELMK 0 0 1 0 A3KN83 A3KN83 A3KN83 SBNO1 Protein strawberry notch homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.914855957031 2 571.749214 1141.48387 35151.1235621986 2.1656 0.0012382 400810 229.16 400810 229.16 800.912095324356 71.481 0.57677 71.481 71.174 71.751 0 49 18 4 0.982873982673959 0.000602853532678155 0.0113094283962017 0.0051924 1 16811 92.295 52.378 1 18982000 14367 12848 13226 13422 13033 14814 16108 14513 14040 22205 13590 12140 13387 13769 13279 14824 16192 15238 13941 21244 1 1 1 1 1 1 1 1 1 1 3267 6 2877 3050 3623 3623 14 NNSNTCNIENELEDSRK 17 Phospho (STY) _NNS(ph)NTCNIENELEDSRK_ NNS(0.996)NT(0.004)CNIENELEDSRK NNS(23.87)NT(-23.87)CNIENELEDS(-188.83)RK 0 0 1 1 Q6PL18 Q6PL18 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 859.403381347656 3 706.291557 2115.85284 33445.6163807997 1.5656 0.0011058 216310 152.78 216310 152.78 859.401642545783 62.723 0.4995 62.723 62.433 62.932 0 56 16 5 0.986834216734691 0.003765930121308 0.0473016326487527 1.4811E-22 1 14718 252.47 232.02 3 25025000 21878 13330 24163 14656 11556 22528 9806.2 17854 15909 10258 20710 12600 24042 15094 12453 22190 10233 18399 15438 10072 1 1 1 1 1 1 1 1 1 1 3268 1274 2878 3051 3624 3624 2270 NNSVSGLSVK 10 Phospho (STY) _NNS(ph)VSGLSVK_ NNS(0.838)VS(0.161)GLSVK NNS(7.16)VS(-7.16)GLS(-33.06)VK 0 0 1 0 Q9UHI6 Q9UHI6 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.919555664063 2 542.755353 1083.49615 36040.3431511499 2.431 0.0013194 422220 229.16 422220 229.16 771.918113359997 56.737 0.64993 56.737 56.308 56.958 0 31 21 2 0.841907265338608 0.00147596821423107 0.030312355218605 0.0080502 1 13286 86.43 58.516 3 30679000 45335 25149 43992 23909 19566 48345 22492 29785 26189 36591 42893 23750 44081 25017 21342 47205 22855 31699 25684 35144 1 1 1 1 1 1 1 1 1 1 3269 2148 2879 3052 3625 3625 3870 NNTITTTSSK 10 Phospho (STY) _NNTITTTSS(ph)K_ NNTITTT(0.008)S(0.093)S(0.9)K NNT(-95.4)IT(-56.95)T(-48.05)T(-20.76)S(-9.88)S(9.88)K 0 0 1 0 O75179 O75179 O75179 ANKRD17 Ankyrin repeat domain-containing protein 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.91943359375 2 573.75555 1145.49655 34568.4590372256 2.6419 0.0015158 399410 229.16 399410 229.16 802.919296251037 38.607 0.3999 38.607 38.325 38.725 0 20 13 2 0.95607287112391 0.000328826270013582 0.00746434459801109 1.7705E-09 1 8764 183.06 129.94 6 8284700 12218 13587 13491 13189 12693 12540 12157 14257 14987 5505.7 11566 12833 13501 13556 12924 12631 12478 14400 14667 5514.2 1 1 1 1 1 1 1 1 1 1 3270 175 2880 3053 3626 3626 305 NPDDITNEEYGEFYK 15 Unmodified _NPDDITNEEYGEFYK_ 0 0 0 0 P07900 P07900 P07900 HSP90AA1 Heat shock protein HSP 90-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.042907714844 3 611.931973 1832.77409 35580.0306208816 2.1166 0.0012952 249660 152.78 249660 152.78 765.041628986128 74.779 0.8188 74.779 74.33 75.149 0 104 24 6 0.943750592754326 0.00889109119577148 0.148995115825703 2.0182E-07 1 17526 167.71 135.62 1 107100000 18453 26866 26058 27791 19005 25513 21848 25819 26180 9880.7 17490 25385 25721 28442 19747 25697 22221 26184 25648 9901.4 1 1 1 1 1 1 1 1 1 1 3271 323 2881 3054 3627 3627 NPDDITQEEYGEFYK 15 Unmodified _NPDDITQEEYGEFYK_ 0 0 0 0 P08238 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.71533203125 3 616.603856 1846.78974 35188.3752730603 1.6816 0.0010369 247770 152.78 247770 152.78 769.713491353955 75.802 0.89817 75.802 75.461 76.359 1.4211E-14 123 28 6 0.97815464287218 0.0118305085141813 0.133543352854025 9.2981E-11 1 17758 197.47 177.04 1 271590000 22261 26888 23855 26272 17101 24402 19594 24286 26682 10008 21070 25396 23851 26983 17795 24560 20019 24666 26027 9985.8 1 1 1 1 1 1 1 1 1 1 3272 331 2882 3055 3628 3628 NPFRGSPK 8 Phospho (STY) _NPFRGS(ph)PK_ NPFRGS(1)PK NPFRGS(72.09)PK 0 0 1 1 Q14966 Q14966 Q14966 ZNF638 Zinc finger protein 638 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.930053710938 3 328.155053 981.44333 45025.7984948799 0.39517 0.00012968 465560 152.78 465560 152.78 480.930299751297 47.724 0.68983 47.724 47.433 48.123 0 72 23 5 0.97011461745794 0.00499124550029164 0.0403401497348341 0.010458 1 11035 72.089 40.658 1 72897000 47925 41735 49722 39659 29729 46873 32165 40125 43967 4589.8 45356 39414 49724 40963 31395 46585 32947 40648 42882 5250.5 1 1 1 1 1 1 1 1 1 1 3273 1033 2883 3056 3629 3629 1775 NPLPPILGSPTK 12 Phospho (STY) _NPLPPILGS(ph)PTK_ NPLPPILGS(0.992)PT(0.008)K NPLPPILGS(20.74)PT(-20.74)K 0 0 1 0 O75385 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.677917480469 3 438.567011 1312.6792 41208.0645843801 1.5575 0.00068308 348350 152.78 348350 152.78 591.341955828598 88.39 0.73655 88.39 88.027 88.763 0 73 25 4 0.952311551687973 0.00417136101221381 0.0643465878165389 3.4839E-05 1 20591 130.21 105.42 2 18846000 5348.9 3592.4 5671.9 4662.9 3351.9 4685.8 3798 4507.1 4872.2 5203 5062.6 3399.7 5665.2 4722.7 3545.8 4703.3 3874 4684.6 4761.8 5003.6 1 1 1 1 1 1 1 1 1 1 3274 181 2884 3057 3630 3630 317 NPPGFAFVEFEDPR 14 Unmodified _NPPGFAFVEFEDPR_ 0 0 0 0 P84103;Q16629 P84103;Q16629 Q16629 SRSF3;SRSF7 Serine/arginine-rich splicing factor 3;Serine/arginine-rich splicing factor 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.647705078125 3 541.259696 1620.75726 39845.6375325262 1.5749 0.00085243 141130 76.388 141130 76.388 617.981677467134 94.379 0.71289 94.379 94.054 94.767 1.4211E-14 75 24 4 0.893723213825435 0.002296634382147 0.12233044433439 0.00015977 1 21948 110.44 80.434 1 13385000 3122.3 3724.8 3400.3 3350.9 3638.5 2973.4 3260.4 2737.7 2753.8 7986.8 2955.5 3516.6 3410.1 3457.3 3672.4 3009.3 3323.1 2995.9 2738.7 7583.9 1 1 1 1 1 1 1 1 1 1 3275 1109;814 2885 3058 3631 3631 NPPGFAFVEFEDPRDAEDAVR 21 Unmodified _NPPGFAFVEFEDPRDAEDAVR_ 0 0 0 1 Q16629 Q16629 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 870.097290039063 3 793.373106 2377.09749 33541.2364309031 1.2545 0.00099532 96283 76.388 96284 76.389 870.095797467535 91.734 0.68882 91.734 91.424 92.113 0 80 23 4 0.647163053589896 0.0030204205595044 0.0410571556304386 9.5153E-05 1 21346 118.36 96.898 1 24252000 7792.5 9030.1 7920.9 8647.1 9223 8056.6 9737.1 8026.9 8108.1 24535 7374.1 8528.3 7985.5 8892.5 9288.4 8147.7 9842.2 8791.9 8069.4 23288 1 1 1 1 1 1 1 1 1 1 3276 1109 2886 3059 3632 3632 NPPSPRPSQLPVLDR 15 Phospho (STY) _NPPS(ph)PRPSQLPVLDR_ NPPS(0.994)PRPS(0.006)QLPVLDR NPPS(22.21)PRPS(-22.21)QLPVLDR 0 0 1 1 Q6ZRS2 Q6ZRS2 Q6ZRS2 SRCAP Helicase SRCAP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.353881835938 3 584.964604 1751.87198 38560.4356843486 1.886 0.0011032 130590 76.388 130590 76.389 661.352782415093 61.929 0.78469 61.929 61.535 62.319 0 85 26 5 0.967610316168362 0.00751260209071852 0.0676722950983075 0.0023913 1 14537 95.122 58.526 2 75767000 21390 22328 20604 23273 24271 21560 21604 24342 22523 6490.2 20237 21098 20832 23811 24377 21735 22145 24504 22185 6674.7 1 1 1 1 1 1 1 1 1 1 3277 1295 2887 3060 3633 3633 2313 NPQMPQYSSPQPGSALSPR 19 Oxidation (M),Phospho (STY) _NPQM(ox)PQYSSPQPGSALS(ph)PR_ NPQM(1)PQYSSPQPGSALSPR NPQMPQYSSPQPGS(0.045)ALS(0.955)PR NPQM(104.89)PQYSSPQPGSALSPR NPQMPQY(-72.32)S(-49.66)S(-38.03)PQPGS(-13.27)ALS(13.27)PR 0 1 1 0 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.041076660156 3 713.317266 2136.92997 35266.3070076821 2.1121 0.0015066 107090 76.387 107090 76.389 790.039151960737 49.509 0.57641 49.509 49.199 49.775 0 54 19 4 0.929034313301409 0.00144982622037454 0.0054232817351312 6.5772E-05 1 11494 104.89 80.334 5 13580000 10106 10712 9822.3 12651 11184 10520 11855 11573 12733 17428 9562 10131 9924.8 12837 11279 10685 12059 12093 12526 16678 1 1 1 1 1 1 1 1 1 1 3278 57 2888 3061 3634 3634 6 85 NPQMPQYSSPQPGSALSPR 19 Phospho (STY) _NPQMPQYSSPQPGSALS(ph)PR_ NPQMPQYSSPQPGS(0.035)ALS(0.965)PR NPQMPQY(-70.6)S(-61.55)S(-44.77)PQPGS(-14.44)ALS(14.44)PR 0 0 1 0 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.70751953125 3 707.985628 2120.93505 35594.6497940662 1.35 0.00095575 107890 76.387 107900 76.388 784.707777451027 59.827 0.74032 59.827 59.483 60.223 7.1054E-15 90 25 5 0.573574381382785 0.00283105549732133 0.0182352462349085 6.5106E-05 1 14006 103.74 87.414 5 51583000 11525 17040 13340 14766 12550 13237 12802 15163 14193 16674 10913 16084 13319 15275 12787 13392 13057 15637 13945 16051 1 1 1 1 1 1 1 1 1 1 3279 57 2888 3062 3635 3635 85 NPYLLSEEEDDDVDGDVNVEKNETEPPK 28 Phospho (STY) _NPYLLS(ph)EEEDDDVDGDVNVEKNETEPPK_ NPYLLS(1)EEEDDDVDGDVNVEKNETEPPK NPY(-112.08)LLS(112.08)EEEDDDVDGDVNVEKNET(-229.19)EPPK 0 0 1 1 O60524 O60524 O60524 NEMF Nuclear export mediator factor NEMF MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 990.476257324219 4 818.102786 3268.38204 30095.0297630027 1.5813 0.0012937 210090 171.87 210090 171.87 990.475526646754 76.146 0.64039 76.146 75.832 76.472 0 86 21 5 0.939483073542676 0.0061921714434976 0.0741575455280303 2.0199E-25 2 17866 272.34 251.06 3 27251000 5053.3 5219.8 4438.5 6578.3 5030.8 6005.8 5756.3 10379 6563.6 133580 4779.4 4938.7 4513.3 6662.3 5081.3 6351.9 5846.6 14266 6442.1 126030 2 2 2 2 2 2 2 2 2 2 3280 150 2889 3063 3636;3637 3637 256 NQDETEDTELQGMNEYLSSFK 21 Unmodified _NQDETEDTELQGMNEYLSSFK_ 0 0 0 0 Q14839 Q14839 Q14839 CHD4 Chromodomain-helicase-DNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.799926757813 3 826.691953 2477.05403 38278.2520810917 1.3224 0.0010932 184800 152.77 184800 152.77 979.799089949049 99.137 0.11253 99.137 99.066 99.179 0 5 3 2 0.384826811675681 0.00107322805221336 0.0481591585519516 2.1249E-08 1 23022 170.14 146.96 1 11658000 8239.2 7910.9 8306.3 8576.1 10159 10631 10775 10544 9117.5 40047 7796.7 7476.9 8384 8798.1 10207 10639 10893 11786 9066.6 37953 1 1 1 1 1 1 1 1 1 1 3281 1030 2890 3064 3638 3638 NQGGYGGSSSSSSYGSGR 18 Phospho (STY) _NQGGYGGSSSSSSYGS(ph)GR_ NQGGYGGSSSSSSYGS(1)GR NQGGY(-293.21)GGS(-166.26)S(-158.7)S(-137.72)S(-119.9)S(-86.88)S(-53.24)Y(-228.19)GS(53.24)GR 0 0 1 0 P09651 P09651 P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1002.42034912109 2 887.836851 1773.65915 31592.335290442 1.6024 0.0014227 129060 114.58 129060 114.58 1002.41873919208 29.056 0.4418 29.056 28.808 29.25 -3.5527E-15 54 14 5 0.996458436760574 0.00294640321799698 0.076195408700088 2.405E-42 1 6452 360.4 340.15 9 48303000 9465.9 17226 10544 14362 10289 10891 18888 16735 18294 860.6 8961.2 16256 10568 14865 10578 11146 18798 16586 18076 1197.7 1 1 1 1 1 1 1 1 1 1 3282 341 2891 3065 3639 3639 556;557 NQGGYGGSSSSSSYGSGR 18 Phospho (STY) _NQGGYGGSSSS(ph)SSYGSGR_ NQGGYGGSSS(0.02)S(0.904)S(0.076)SYGSGR NQGGY(-191.04)GGS(-54.5)S(-43.73)S(-16.62)S(10.76)S(-10.76)S(-33.06)Y(-171.34)GS(-109.92)GR 0 0 1 0 P09651 P09651 P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1002.41931152344 2 887.836851 1773.65915 31600.5122311852 1.9984 0.0017743 129060 114.58 129060 114.58 1002.91882366932 30.091 0.65584 30.091 29.749 30.405 -3.5527E-15 52 21 3 0.95291680087039 0.000604191318250752 0.0208192552207492 6.7098E-31 1 6671 289.95 269.82 9 9286700 4551.3 5308.2 4821.5 4080.6 3470.2 5946.5 4717.3 4812.8 5066.9 1246.9 4307.7 5007.5 4825.2 4294.7 3619.3 5865.3 4751.5 4909.1 4984.7 1285.5 1 1 1 1 1 1 1 1 1 1 3283 341 2891 3065 3640 3640 556;557 NQIPRTPENLITEIR 15 Phospho (STY) _NQIPRT(ph)PENLITEIR_ NQIPRT(1)PENLITEIR NQIPRT(79.62)PENLIT(-79.62)EIR 0 0 1 1 Q7Z4H7 Q7Z4H7 Q7Z4H7 HAUS6 HAUS augmin-like complex subunit 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.044555664063 3 625.322569 1872.94588 36795.2699885226 1.692 0.001058 122160 76.388 122160 76.389 702.044325211805 78.403 0.62707 78.403 78.036 78.664 1.4211E-14 66 21 4 0.987948777603653 0.00577128791699372 0.107840856910524 6.6996E-08 1 18374 174.82 139.91 2 17859000 7800 7890 7530.5 8371.9 7453.5 6688.5 7053.2 7739.8 8702.6 8275.9 7379.8 7456.2 7596.6 8539.6 7564.2 6808.1 7243.9 7972.2 8516.9 7971.9 1 1 1 1 1 1 1 1 1 1 3284 1340 2892 3066 3641 3641 4640 NQKPSQVNGAPGSPTEPAGQK 21 Phospho (STY) _NQKPSQVNGAPGS(ph)PTEPAGQK_ NQKPSQVNGAPGS(0.989)PT(0.011)EPAGQK NQKPS(-68.75)QVNGAPGS(19.71)PT(-19.71)EPAGQK 0 0 1 1 Q9BQG0 Q9BQG0 Q9BQG0 MYBBP1A Myb-binding protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.171997070313 3 724.674218 2171.00083 32667.839355774 1.2845 0.00093087 316230 229.16 316230 229.16 954.171350867926 40.757 0.34265 40.757 40.568 40.911 7.1054E-15 38 11 4 0.975694768991502 0.00213122193584179 0.0130999094972833 1.0219E-11 1 9280 200.12 173.28 3 23634000 17346 15681 19182 15055 6987 19394 8395.2 13985 18516 3955.9 16421 14810 19063 15565 7840 19185 8755.1 14356 17841 4048.6 1 1 1 1 1 1 1 1 1 1 3285 1807 2893 3067 3642 3642 3317 NQLTSNPENTVFDAK 15 Unmodified _NQLTSNPENTVFDAK_ 0 0 0 0 P11021 P11021 P11021 HSPA5 78 kDa glucose-regulated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.051818847656 3 559.940803 1676.80058 37545.0589828638 2.1491 0.0012034 272840 152.78 272850 152.78 713.050878341287 69.463 0.55253 69.463 69.234 69.787 0 52 18 4 0.823560366431765 0.00466381525205063 0.0515338729723623 4.9845E-05 1 16291 128.9 103.18 1 16371000 12293 15875 13294 17552 19603 12020 20268 15703 19291 8637.8 11636 15006 13407 17831 19529 12358 20573 15868 19076 8496.9 1 1 1 1 1 1 1 1 1 1 3286 358 2894 3068 3643 3643 NQNYLVPSPVLR 12 Phospho (STY) _NQNYLVPS(ph)PVLR_ NQNYLVPS(1)PVLR NQNY(-87.41)LVPS(87.41)PVLR 0 0 1 0 Q9UID6 Q9UID6 Q9UID6 ZNF639 Zinc finger protein 639 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.953308105469 2 740.371416 1478.72828 34699.0494284313 1.8097 0.0013398 154760 114.58 154760 114.58 854.952545542898 77.897 0.48603 77.897 77.661 78.147 1.4211E-14 37 16 3 0.721142878023049 0.00052009627269545 0.0149164972373939 5.5851E-07 1 18282 145 112.39 2 8993200 8925.3 9384.7 7943.1 8791.6 7163.5 8596.1 6316 8184.5 10174 18420 8441.9 8862 8043.6 9060 7307.2 8654.5 6575.5 8780.6 9874.9 17534 1 1 1 1 1 1 1 1 1 1 3287 2155 2895 3069 3644 3644 3880 NQQGFSPK 8 Phospho (STY) _NQQGFS(ph)PK_ NQQGFS(1)PK NQQGFS(77.74)PK 0 0 1 0 Q9NS87 Q9NS87 Q9NS87 KIF15 Kinesin-like protein KIF15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.373962402344 2 493.210582 984.40661 36472.4608359011 2.6123 0.0012884 464630 229.16 464640 229.16 722.373825230778 44.7 0.46715 44.7 44.48 44.948 0 26 15 2 0.488277617689985 0.000719239375233286 0.0135857116774525 0.014563 1 10305 77.744 38.122 1 13107000 28206 24478 27455 22927 18309 27921 18747 25140 24065 6959.6 26688 23114 27578 23716 19131 27742 19207 25535 23519 7135.1 1 1 1 1 1 1 1 1 1 1 3288 2025 2896 3070 3645 3645 3677 NQSFCPTVNLDK 12 Phospho (STY) _NQS(ph)FCPTVNLDK_ NQS(1)FCPTVNLDK NQS(51.96)FCPT(-51.96)VNLDK 0 0 1 0 P46776 P46776 P46776 RPL27A 60S ribosomal protein L27a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.660400390625 3 501.549691 1501.62724 38964.9135848358 1.9027 0.00095429 304610 152.77 304610 152.78 654.324788059376 71.306 0.51655 71.306 71.06 71.576 -1.4211E-14 49 17 4 0.838637314931205 0.00223248089904091 0.0271203808786615 5.0899E-05 1 16730 126.26 80.724 2 17070000 18253 9860.7 17055 6621.4 7911.6 18080 7629.4 12309 8743.5 9853.5 17268 9296.6 17130 7180.5 8565.6 17558 7810.1 12867 8580 9563.2 1 1 1 1 1 1 1 1 1 1 3289 612 2897 3071 3646 3646 1009 NQSRSPIK 8 Phospho (STY) _NQSRS(ph)PIK_ NQS(0.097)RS(0.903)PIK NQS(-9.68)RS(9.68)PIK 0 0 1 1 Q684P5 Q684P5 Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 489.941284179688 3 337.165729 1008.47536 45503.1829707487 1.0956 0.00036941 453120 152.78 453120 152.78 489.941269499721 29.411 0.50115 29.411 29.135 29.636 -3.5527E-15 31 16 3 0.464626469075693 0.000758558376339405 0.0133738055227212 0.038851 1 6567 43.084 8.706 2 10745000 16929 9450.7 15660 9382.8 18500 16878 16577 14189 9517.3 2466 16014 8927.4 15873 9758.6 18572 16554 16773 14411 9690.2 2650.4 1 1 1 1 1 1 1 1 1 1 3290 1227 2898 3072 3647 3647 2165 NQSSEDILR 9 Phospho (STY) _NQS(ph)SEDILR_ NQS(0.815)S(0.185)EDILR NQS(6.44)S(-6.44)EDILR 0 0 1 0 Q13625 Q13625 Q13625 TP53BP2 Apoptosis-stimulating of p53 protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.830017089844 2 571.247892 1140.48123 37573.56555905 2.0969 0.0011979 200580 114.58 200580 114.58 685.829362807181 49.473 0.54976 49.473 49.169 49.718 0 35 18 3 0.846043005790075 0.000738961986207224 0.00623048758540572 0.00055237 1 11481 108.72 76.302 2 11093000 14245 18545 12621 16560 16475 12456 16094 17895 17987 6727.4 13474 17507 12849 17059 16488 12750 16453 17942 17668 6748.8 1 1 1 1 1 1 1 1 1 1 3291 976 2899 3073 3648 3648 1653;1654 NQTYSFSPSK 10 Phospho (STY) _NQTYSFS(ph)PSK_ NQT(0.001)YS(0.006)FS(0.993)PS(0.001)K NQT(-31.46)Y(-80.79)S(-22.5)FS(22.5)PS(-30.79)K 0 0 1 0 Q86YS7 Q86YS7 Q86YS7 C2CD5 C2 domain-containing protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 848.921264648438 2 619.758093 1237.50163 35316.7622430141 1.4869 0.00092151 369760 229.16 369760 229.16 848.921270510162 58.01 0.55863 58.01 57.732 58.291 0 43 18 3 0.579975142053262 0.00168549463453157 0.0289943725502893 3.9137E-06 1 13588 139.7 96.917 5 37561000 74502 30796 77060 27194 29457 76900 34113 42213 27216 23762 70507 29071 76874 28941 32763 74472 34312 44403 27146 23352 1 1 1 1 1 1 1 1 1 1 3292 1403 2900 3074 3649 3649 2546 NREEEWDPEYTPK 13 Phospho (STY) _NREEEWDPEYT(ph)PK_ NREEEWDPEYT(1)PK NREEEWDPEY(-70.4)T(70.4)PK 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.352966308594 3 591.576963 1771.70906 35974.5201395892 1.7708 0.0010476 258250 152.77 258250 152.78 744.352363381561 58.124 0.49872 58.124 57.935 58.433 0 48 16 4 0.877471484994076 0.00250052638757343 0.0316029424637373 4.6511E-07 1 13604 165.66 140.73 2 29522000 33179 15940 31134 15814 13537 30511 11065 21199 16845 14839 31388 15057 31247 16481 14747 29838 11541 22072 16376 14464 1 1 1 1 1 1 1 1 1 1 3293 2257 2901 3075 3650 3650 4846 NRENSPSSQSAGLSSINK 18 Phospho (STY) _NRENS(ph)PSSQSAGLSSINK_ NRENS(0.984)PS(0.015)S(0.002)QSAGLSSINK NRENS(18.26)PS(-18.26)S(-27.78)QS(-79.62)AGLS(-161.36)S(-181.28)INK 0 0 1 1 Q9H2Y7 Q9H2Y7 Q9H2Y7 ZNF106 Zinc finger protein 106 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.742370605469 3 652.63213 1954.87456 35203.5525398351 0.92502 0.0006037 234090 152.78 234090 152.78 805.741762523639 47.214 0.75402 47.214 46.574 47.328 7.1054E-15 40 26 3 0.934302270108277 0.00148896037756477 0.00626069206270814 1.0604E-22 3 10902 258.86 207.64 6 50049000 68866 57728 72492 58720 43169 79848 45756 60850 67763 62619 65178 54540 72433 60570 45597 78972 47054 63660 65928 60372 3 3 3 3 3 3 3 3 3 3 3294 1925 2902 3076 3651;3652;3653 3651 3492 NRNSNVIPYDYNR 13 Phospho (STY) _NRNS(ph)NVIPYDYNR_ NRNS(1)NVIPYDYNR NRNS(52.22)NVIPY(-54.48)DY(-52.22)NR 0 0 1 1 P08575 P08575 P08575 PTPRC Receptor-type tyrosine-protein phosphatase C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.643127441406 3 568.921176 1703.7417 39138.8006025062 1.2371 0.00070384 134270 76.388 134270 76.388 645.643407151642 50.392 0.90031 50.392 49.804 50.705 -7.1054E-15 89 30 5 0.961932836481174 0.00539431835585643 0.0223246024528107 0.00014445 1 11675 106.75 97.494 3 98585000 14341 13963 13966 13128 21309 13899 26594 19872 16989 5984.9 13569 13185 14184 13542 21256 13983 26554 19882 17170 6095.4 1 1 1 1 1 1 1 1 1 1 3295 334 2903 3077 3654 3654 545 NRPTSISWDGLDSGK 15 Phospho (STY) _NRPT(ph)SISWDGLDSGK_ NRPT(0.758)S(0.241)IS(0.001)WDGLDSGK NRPT(4.97)S(-4.97)IS(-31.33)WDGLDS(-90.17)GK 0 0 1 1 P30086 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.370910644531 3 571.592836 1711.75668 36207.0175767838 2.3306 0.0013322 267290 152.78 267290 152.78 724.706864538296 71.932 0.76081 71.932 71.491 72.252 0 76 25 5 0.936613898253583 0.00277318120166115 0.0221568654246356 0.00010118 1 16875 130.01 104.69 4 30874000 19158 14430 16065 13219 9911.2 16438 13469 14656 14657 14914 18117 13624 16286 13698 10473 16339 13572 15220 14412 14382 1 1 1 1 1 1 1 1 1 1 3296 510 2904 3078 3655 3655 4439 NRSDTEQEGK 10 Phospho (STY) _NRS(ph)DTEQEGK_ NRS(1)DTEQEGK NRS(35.01)DT(-35.01)EQEGK 0 0 1 1 Q13769 Q13769 Q13769 THOC5 THO complex subunit 5 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 567.945190429688 3 415.169868 1242.48777 41555.8316366318 1.7571 0.0007295 367980 152.78 367980 152.78 567.944725982284 24.875 0.46751 24.875 24.742 25.21 0 25 15 2 0.957919572594084 0.00179967824737586 0.0153817246189069 0.00026426 1 5559 101.61 69.193 2 5642200 4398.1 5730 3887.3 5691.2 4403.5 4222.4 5702.6 5285.3 5496.8 2135 4159.8 5412.7 3952.4 5822.3 4456.4 4315.2 5736.7 5324.6 5432.4 2132.7 1 1 1 1 1 1 1 1 1 1 3297 978 2905 3079 3656 3656 1655 NRSFSLK 7 Phospho (STY) _NRS(ph)FSLK_ NRS(1)FSLK NRS(45.52)FS(-45.52)LK 0 0 1 1 O00148 O00148 O00148 DDX39A ATP-dependent RNA helicase DDX39A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 463.926696777344 3 311.15142 930.432431 45905.6400959128 0.49637 0.00015445 491000 152.78 491000 152.78 463.926694896452 54.091 0.5552 54.091 53.744 54.299 7.1054E-15 64 18 4 0.984654770587307 0.00286905943325217 0.0280026087451489 0.00041377 1 12571 128.35 79.288 2 84877000 28495 15043 31387 14349 32207 26609 34500 26743 14543 1885.9 26974 14207 31453 14973 32649 26130 34461 26877 15196 2394.7 1 1 1 1 1 1 1 1 1 1 3298 31 2906 3080 3657 3657 53 NRSSGKTPETLVPTAPK 17 Phospho (STY) _NRSSGKT(ph)PETLVPTAPK_ NRS(0.293)S(0.293)GKT(0.411)PET(0.004)LVPTAPK NRS(-1.48)S(-1.48)GKT(1.48)PET(-20.29)LVPT(-65.75)APK 0 0 1 2 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.613708496094 4 466.489749 1861.92989 39894.5652623092 2.0733 0.00096718 368440 171.87 368440 171.87 638.360342394495 57.213 0.54949 57.213 56.928 57.478 0 55 18 4 0.780467005669729 0.00288390593059347 0.0296033607928271 9.9544E-05 1 13390 109.05 88.397 5 16455000 10022 12656 10225 18026 11988 10361 13882 9978 11295 4343.3 9484.4 11986 10309 18058 12086 10731 13969 10154 11255 4320.6 1 1 1 1 1 1 1 1 1 1 3299 1016 2907 3081 3658 3658 1730;4559 NRTPSDVK 8 Phospho (STY) _NRT(ph)PSDVK_ NRT(0.999)PS(0.001)DVK NRT(32.72)PS(-32.72)DVK 0 0 1 1 P39687;O95626 P39687 P39687 ANP32A;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 485.597747802734 3 332.821851 995.443724 45100.8699508856 1.0923 0.00036353 459030 152.78 459030 152.78 485.597127317642 29.455 0.82141 29.455 29.163 29.985 0 78 27 5 0.901126125148796 0.00347157434944181 0.0917866607775561 0.0041721 1 6531 99.283 63.339 2 98647000 16821 14894 19667 16236 26823 17165 26399 20356 16710 2436.7 15927 14077 19727 16603 26782 17209 26627 20369 16898 2765.6 1 1 1 1 1 1 1 1 1 1 3300 567 2908 3082 3659 3659 4457 NRTPSDVK 8 Phospho (STY) _NRT(ph)PSDVK_ NRT(0.578)PS(0.422)DVK NRT(1.37)PS(-1.37)DVK 0 0 1 1 P39687;O95626 P39687 P39687 ANP32A;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 485.598022460938 3 332.821851 995.443724 45094.3930714718 1.3731 0.000457 459030 152.78 459030 152.78 485.596912411519 30.799 0.47858 30.799 30.523 31.002 0 31 15 3 0.8807549630139 0.00140529207011145 0.0479476882229637 0.048276 1 6885 59.542 33.603 2 6477200 16537 9805.3 16525 9346.2 13482 16632 12852 13856 10629 2965.7 15648 9260.1 16602 9741.5 13850 16317 13052 14095 10582 3113.3 1 1 1 1 1 1 1 1 1 1 3301 567 2908 3082 3660 3660 4457 NSASATTPLSGNSSR 15 Phospho (STY) _NSASATTPLS(ph)GNSSR_ NSASAT(0.002)T(0.005)PLS(0.99)GNS(0.002)SR NS(-62.96)AS(-41.61)AT(-26.47)T(-22.59)PLS(22.59)GNS(-27.07)S(-33.23)R 0 0 1 0 Q9Y608 Q9Y608 Q9Y608 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.422058105469 2 765.333216 1528.65188 33380.4437082496 1.0073 0.00077092 149720 114.58 149720 114.58 880.417663875221 34.162 0.28982 34.162 33.962 34.252 0 20 9 3 0.761365306294298 0.00041410715857257 0.00951963967242015 0.0090685 1 7639 86.798 73.693 7 15870000 4334.2 7915.2 4720.9 7281.3 12016 5346.4 13835 8200 9187.9 2889.9 4102.7 7473.6 4824.2 7483.8 11784 5486.5 13868 8201.7 9262.8 2911 1 1 1 1 1 1 1 1 1 1 3302 2304 2909 3083 3661 3661 4243;4244 NSASATTPLSGNSSR 15 Phospho (STY) _NSASATTPLSGNS(ph)SR_ NSASATTPLS(0.071)GNS(0.583)S(0.345)R NS(-66.65)AS(-50.19)AT(-39.75)T(-32.07)PLS(-9.12)GNS(2.27)S(-2.27)R 0 0 1 0 Q9Y608 Q9Y608 Q9Y608 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.915832519531 2 765.333216 1528.65188 NaN NaN NaN NaN NaN NaN NaN NaN 37.171 1 37.171 36.671 37.671 0 NaN NaN NaN 0.020833 1 8394 81.606 52.265 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3303 2304 2909 3083 3662 3662 4243;4244 NSASVGIIQR 10 Phospho (STY) _NSAS(ph)VGIIQR_ NS(0.003)AS(0.997)VGIIQR NS(-25.38)AS(25.38)VGIIQR 0 0 1 0 Q53EU6 Q53EU6 Q53EU6 AGPAT9 Glycerol-3-phosphate acyltransferase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.359497070313 2 562.77662 1123.53869 37891.5251598346 1.2703 0.0007149 203600 114.58 203600 114.58 677.358221485507 50.299 0.89924 50.299 49.747 50.647 0 67 30 4 0.65089857993389 0.00072325055242449 0.0120996242301019 0.00024807 1 11650 118.24 50.855 2 94177000 12660 34827 12227 34704 15792 10753 14445 21967 34644 9729.6 11978 32899 12378 35256 15815 12006 15321 21893 33326 9670 1 1 1 1 1 1 1 1 1 1 3304 1147 2910 3084 3663 3663 1994 NSATFKSFEDR 11 Phospho (STY) _NSATFKS(ph)FEDR_ NSAT(0.021)FKS(0.979)FEDR NS(-39.45)AT(-16.65)FKS(16.65)FEDR 0 0 1 1 O43399 O43399 O43399 TPD52L2 Tumor protein D54 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.310729980469 3 461.197646 1380.57111 39459.6582869355 1.1025 0.00050849 331260 152.78 331260 152.78 613.973408675906 57.95 2.1996 57.95 57.393 59.593 0 231 75 7 0.992922859234534 0.0239681064764822 0.393606108599519 0.0011301 2 13516 98.281 69.954 3 1982000000 89358 96541 93843 101520 96220 97193 100400 106010 114920 9661.9 84572 91228 94273 103860 97576 97743 102390 106290 112770 11551 2 2 2 2 2 2 2 2 2 2 3305 110 2911 3085 3664;3665 3664 187 NSDGGSDPETQK 12 Phospho (STY) _NSDGGS(ph)DPETQK_ NS(0.096)DGGS(0.904)DPETQK NS(-9.72)DGGS(9.72)DPET(-54.18)QK 0 0 1 0 O75554 O75554 O75554 WBP4 WW domain-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.609497070313 3 438.833033 1313.47727 41087.4975938762 2.0264 0.00088924 348140 152.78 348140 152.78 591.942532148095 30.498 0.38759 30.498 30.254 30.641 0 30 12 3 0.493845662368727 0.000639701742645634 0.0228708430863053 0.0034296 1 6813 91.355 66.502 3 5788800 9657 8214.5 10376 8652.1 9363.4 11593 7619.1 8935.5 10287 2577.1 9140.7 7762.5 10391 8904.3 9539.7 11461 7912.4 9143.6 10037 2633.4 1 1 1 1 1 1 1 1 1 1 3306 192 2912 3086 3666 3666 336 NSENKESIPSLPQSPMR 17 Phospho (STY) _NSENKESIPSLPQS(ph)PMR_ NS(0.001)ENKES(0.003)IPS(0.018)LPQS(0.978)PMR NS(-31.83)ENKES(-25.17)IPS(-17.28)LPQS(17.28)PMR 0 0 1 1 Q8NEZ4 Q8NEZ4 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.4169921875 3 665.306478 1992.89761 34474.3370037595 1.7811 0.001185 229630 152.78 229630 152.78 818.416628411035 62.665 0.26948 62.665 62.492 62.761 0 21 8 3 0.959841272929158 0.00153534623402281 0.0243355781383562 0.020725 1 14721 59.324 56.194 4 7907800 9129.1 8600.2 9840.8 9005.9 7613.8 10234 6977.4 8818.5 9585.4 11861 8641.1 8126.6 9839.8 9242 7851.5 10208 7204.4 9257.9 9347.3 11373 1 1 1 1 1 1 1 1 1 1 3307 1519 2913 3087 3667 3667 2789 NSGSQEEDGKPK 12 Phospho (STY) _NSGS(ph)QEEDGKPK_ NS(0.149)GS(0.851)QEEDGKPK NS(-7.57)GS(7.57)QEEDGKPK 0 0 1 1 Q8N5P1 Q8N5P1 Q8N5P1 ZC3H8 Zinc finger CCCH domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.685180664063 3 452.520678 1354.5402 37336.0351046629 2.0808 0.00094158 506410 229.16 506420 229.16 681.68385571562 32.867 0.51936 32.867 32.679 33.198 0 53 17 4 0.980596492819565 0.000672913807151044 0.0196557738569562 0.023258 1 7401 56.121 42.717 2 24627000 6930.1 9382.1 7664 9696.9 13892 8002.9 13835 10021 10085 3593.4 6560.4 8864.7 7751.2 9910 13726 8129.4 13983 10082 10110 3615.5 1 1 1 1 1 1 1 1 1 1 3308 1475 2914 3088 3668 3668 2724 NSLDASRPAGLSPTLTPGER 20 Phospho (STY) _NSLDASRPAGLS(ph)PTLTPGER_ NSLDASRPAGLS(0.823)PT(0.174)LT(0.003)PGER NS(-50.81)LDAS(-38.71)RPAGLS(6.74)PT(-6.74)LT(-24.41)PGER 0 0 1 1 Q14135 Q14135 Q14135 VGLL4 Transcription cofactor vestigial-like protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.733825683594 3 707.01083 2118.01066 34968.2459566339 1.183 0.00083638 108040 76.387 108040 76.388 783.732493440772 60.769 0.63582 60.769 60.459 61.095 -7.1054E-15 55 21 4 0.704340152025769 0.00213990753536237 0.0317734091836023 6.828E-05 1 14227 101.58 75.141 5 30756000 13858 13819 14238 13454 15330 14761 16991 15771 13368 18009 13114 13052 14331 13858 15513 14784 17117 16323 13344 17322 1 1 1 1 1 1 1 1 1 1 3309 986 2915 3089 3669 3669 1665 NSLESISSIDR 11 Phospho (STY) _NSLES(ph)ISSIDR_ NS(0.031)LES(0.969)ISSIDR NS(-14.99)LES(14.99)IS(-54.72)S(-82.21)IDR 0 0 1 0 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.373474121094 2 650.792664 1299.57078 35704.9683571833 1.5127 0.00098445 176070 114.58 176070 114.58 765.374067904374 64.621 1.0186 64.621 63.977 64.995 0 85 34 4 0.990345960407058 0.00190632403617338 0.057187306609896 3.4204E-21 1 15145 258.79 193.87 4 59836000 22808 16123 24724 17122 14202 26190 14981 17648 17460 8375.7 21589 15237 24658 17665 15047 25755 15280 18285 17123 8295.1 1 1 1 1 1 1 1 1 1 1 3310 994 2916 3090 3670 3670 1692 NSLETLLYKPVDR 13 Phospho (STY) _NSLETLLY(ph)KPVDR_ NSLETLLY(1)KPVDR NS(-82.87)LET(-40.07)LLY(40.07)KPVDR 0 0 1 1 P11274 P11274 P11274 BCR Breakpoint cluster region protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.051330566406 3 543.274556 1626.80184 37569.7039275832 1.5067 0.00081854 281210 152.77 281210 152.78 696.383907243774 85.882 0.79873 85.882 85.419 86.217 0 94 27 4 0.989703728375051 0.00373128986342061 0.0481542014117158 6.6035E-06 1 20018 137.27 110.3 3 42972000 4488 27957 3801 26795 5239.9 3300.4 6343.8 12164 31452 9531.5 4244.3 26404 3886.5 27206 5271.8 4485.9 7092 12145 29969 9256.6 1 1 1 1 1 1 1 1 1 1 3311 362 2917 3091 3671 3671 4870 NSLKRPR 7 Phospho (STY) _NS(ph)LKRPR_ NS(1)LKRPR NS(47.1)LKRPR 0 0 1 2 Q9NWH9 Q9NWH9 Q9NWH9 SLTM SAFB-like transcription modulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 470.278625488281 3 317.502564 949.485864 45353.279110163 0.96491 0.00030636 481180 152.78 481180 152.78 470.278228281877 28.461 0.60053 28.461 28.151 28.751 3.5527E-15 50 20 3 0.939083601959472 0.00680043383022578 0.120223778985476 0.056114 1 6307 47.097 23.067 1 37997000 16036 19260 15671 19103 23258 14359 22415 22368 21298 3260.4 15172 18193 15892 19548 23141 14711 22827 22225 21062 3587.7 1 1 1 1 1 1 1 1 1 1 3312 2054 2918 3092 3672 3672 3720 NSLLAGGDDDTMSVISGISSR 21 Phospho (STY) _NSLLAGGDDDTMSVISGIS(ph)SR_ NSLLAGGDDDTMSVIS(0.001)GIS(0.813)S(0.186)R NS(-126.27)LLAGGDDDT(-92.36)MS(-64.48)VIS(-31.12)GIS(6.4)S(-6.4)R 0 0 1 0 Q8N3U4 Q8N3U4 Q8N3U4 STAG2 Cohesin subunit SA-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.048645019531 3 725.659357 2173.95624 35097.2275080927 1.6661 0.001209 105270 76.387 105270 76.388 802.381237849943 88.356 0.62567 88.356 88.168 88.794 0 52 21 3 0.819740735802603 0.00314505238920492 0.0560054805284437 1.0578E-07 1 20640 143.07 125.37 6 11830000 5323.7 4174.5 5000 4732.9 4775.7 6290.8 3486.4 5677.4 3957 22258 5036.4 3946.7 5048.2 4850.5 4841.8 6270.2 3623.7 6389.3 3884.4 21090 1 1 1 1 1 1 1 1 1 1 3313 1463 2919 3093 3673 3673 2709 NSNSPPSPSSMNQR 14 Oxidation (M),Phospho (STY) _NSNSPPS(ph)PSSM(ox)NQR_ NSNSPPSPSSM(1)NQR NSNS(0.002)PPS(0.955)PS(0.035)S(0.008)MNQR NSNSPPSPSSM(104.55)NQR NS(-51.2)NS(-26.36)PPS(14.42)PS(-14.42)S(-20.74)MNQR 0 1 1 0 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 914.399658203125 2 799.816876 1597.6192 32549.2426642522 1.7702 0.0014158 143260 114.58 143260 114.58 914.398874838459 24.248 0.26157 24.248 24.078 24.34 0 23 8 3 0.977372923383441 0.00117581998440526 0.0538532883406086 0.000249 1 5422 104.55 75.191 5 4274400 4681.9 977.97 4470.9 1367.4 623.62 4594.8 462.52 2237.8 1407.4 203.95 4429.5 926.07 4466.7 1432.1 858.63 4432.4 504.41 2342.2 1348.6 243.83 1 1 1 1 1 1 1 1 1 1 3314 1350 2920 3094 3674 3674 166 2443;2444;2445 NSNSPPSPSSMNQR 14 Phospho (STY) _NSNSPPS(ph)PSSMNQR_ NSNSPPS(0.997)PS(0.002)SMNQR NS(-120.15)NS(-79.36)PPS(26.34)PS(-26.34)S(-36.59)MNQR 0 0 1 0 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 906.40380859375 2 791.819419 1581.62428 33120.8667949903 1.5217 0.0012049 144710 114.58 144710 114.58 906.400297503975 33.287 0.49649 33.287 32.911 33.407 7.1054E-15 51 17 4 0.977325168330902 0.000849910384492262 0.0359382004440618 2.9752E-23 1 7397 282.29 236.09 5 24403000 11466 3284.5 11801 2483.5 2976.8 12913 3100.5 5739.2 3989.9 1214.9 10851 3098.2 11756 2766.4 3544.4 12390 3174.5 6071.4 3899.2 1276.8 1 1 1 1 1 1 1 1 1 1 3315 1350 2920 3095 3675 3675 2443;2444;2445 NSNSPPSPSSMNQR 14 2 Phospho (STY) _NSNS(ph)PPS(ph)PSSMNQR_ NS(0.004)NS(0.996)PPS(0.832)PS(0.162)S(0.006)MNQR NS(-23.92)NS(23.92)PPS(7.11)PS(-7.11)S(-21.78)MNQR 0 0 2 0 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 946.384338378906 2 831.802584 1661.59061 32599.4327985603 1.1196 0.00093129 137750 114.58 137750 114.58 946.383927639897 34.844 0.84163 34.844 34.633 35.475 0 57 28 3 0.958687050081662 0.000388885104150205 0.0108343540070609 7.0866E-11 1 7848 210.62 177.4 10 9312900 7734.8 2568.1 7814.5 2199.9 2882.8 7625.5 3455.9 4820.3 2812.6 2540.1 7319.4 2423.9 7804.9 2368.4 3224.2 7370.8 3472.7 5020.4 2802.5 2503.4 1 1 1 1 1 1 1 1 1 1 3316 1350 2920 3096 3676 3676 2443;2444;2445 NSPDINLEK 9 Phospho (STY) _NS(ph)PDINLEK_ NS(1)PDINLEK NS(60.56)PDINLEK 0 0 1 0 Q6P1J6 Q6P1J6 Q6P1J6 PLB1 Phospholipase B1, membrane-associated;Phospholipase A2;Lysophospholipase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.276184082031 3 370.500666 1108.48017 43605.490630957 1.3421 0.00049724 412350 152.78 412350 152.78 523.275953120118 49.174 0.45441 49.174 48.884 49.338 0 37 15 4 0.939585982285077 0.00228135024417411 0.0500040228121515 0.015912 1 11408 60.563 17.317 1 12463000 17176 8132.9 16404 10604 6297 15903 6526.8 10989 9252 1995.4 16250 7696.9 16439 10822 6992.7 15646 6707.3 11274 9013.4 2133.2 1 1 1 1 1 1 1 1 1 1 3317 1254 2921 3097 3677 3677 2222 NSPEDKR 7 Phospho (STY) _NS(ph)PEDKR_ NS(1)PEDKR NS(93.48)PEDKR 0 0 1 1 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.355163574219 2 463.192389 924.370225 37005.7541740814 2.0425 0.00094608 494750 229.16 494750 229.16 692.354863188983 25.116 0.81425 25.116 24.861 25.675 0 78 27 4 0.994939921514349 0.00360167878309543 0.0619627539383673 0.0078095 1 5586 93.477 58.12 1 20060000 16170 9436.3 15108 9984.9 8909.5 15487 7513.7 11941 10945 6086.3 15297 8917.2 15196 10307 9390.9 15245 7809.3 12298 10654 6007.4 1 1 1 1 1 1 1 1 1 1 3318 964 2922 3098 3678 3678 1634 NSPEDLGLSLTGDSCK 16 Phospho (STY) _NS(ph)PEDLGLSLTGDSCK_ NS(1)PEDLGLSLTGDSCK NS(44.86)PEDLGLS(-44.86)LT(-79)GDS(-95.62)CK 0 0 1 0 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.362426757813 3 591.58513 1771.73356 36213.2018785247 1.7927 0.0010605 258250 152.77 258250 152.78 744.359979714003 80.936 1.3915 80.936 80.668 82.059 0 91 47 3 0.552942954610498 0.0016905301888326 0.0572305569138735 0.00020148 1 19026 101.16 81.32 4 18290000 5593.2 7158.3 6509.6 7330.1 5377.7 4925.6 6449.6 6345 6779.2 22448 5296 6763.2 6490.3 7477.2 5539.6 5104.6 6522.7 6985.9 6675 21284 1 1 1 1 1 1 1 1 1 1 3319 911 2923 3099 3679 3679 1501 NSPGLLVSPGNLNK 14 Phospho (STY) _NS(ph)PGLLVSPGNLNK_ NS(1)PGLLVSPGNLNK NS(63.51)PGLLVS(-63.51)PGNLNK 0 0 1 0 Q06413 Q06413 Q06413 MEF2C Myocyte-specific enhancer factor 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.027526855469 3 497.251863 1488.73376 37924.8492114857 2.0301 0.0010095 307240 152.78 307240 152.78 650.027394157681 78.129 0.8001 78.129 77.751 78.551 0 115 27 6 0.900706248707841 0.00810888705692123 0.0589665735075771 7.2782E-08 1 18272 172.95 142.97 2 179960000 20612 14120 22387 12633 9905.6 21099 10571 15900 14767 4683.1 19510 13330 22289 13198 10803 20714 10843 16291 14393 4777.7 1 1 1 1 1 1 1 1 1 1 3320 877 2924 3100 3680 3680 1420 NSPGSQVASNPR 12 Phospho (STY) _NS(ph)PGSQVASNPR_ NS(1)PGSQVASNPR NS(38.82)PGS(-38.82)QVAS(-74.86)NPR 0 0 1 0 Q9H0D6 Q9H0D6 Q9H0D6 XRN2 5-3 exoribonuclease 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.865600585938 2 647.282798 1292.55104 36036.7168498538 1.7127 0.0011086 177020 114.58 177020 114.58 761.864101939825 27.546 0.31618 27.546 27.35 27.667 0 26 10 4 0.944891959732278 0.00297479603828121 0.0490526467506215 3.3012E-12 1 6134 212.43 188.21 3 20519000 12049 12130 11169 11687 11539 12020 12747 13200 13500 4067.9 11398 11456 11304 12032 11706 12056 12938 13317 13288 4135.9 1 1 1 1 1 1 1 1 1 1 3321 1902 2925 3101 3681 3681 3458 NSPLDCGSASPNK 13 Phospho (STY) _NSPLDCGSAS(ph)PNK_ NSPLDCGSAS(1)PNK NS(-96.01)PLDCGS(-40.99)AS(40.99)PNK 0 0 1 0 O75179 O75179 O75179 ANKRD17 Ankyrin repeat domain-containing protein 17 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.969177246094 3 476.193796 1425.55956 NaN NaN NaN NaN NaN NaN NaN NaN 47.414 1 47.414 46.914 47.914 0 NaN NaN NaN 0.00019163 1 10977 116.96 101.99 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3322 175 2926 3102 3682 3682 306 NSPNNISGISNPPGTPR 17 Phospho (STY) _NS(ph)PNNISGISNPPGTPR_ NS(1)PNNISGISNPPGTPR NS(70.31)PNNIS(-70.31)GIS(-101.37)NPPGT(-127.78)PR 0 0 1 0 Q9BWW4 Q9BWW4 Q9BWW4 SSBP3 Single-stranded DNA-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.667907714844 3 601.27914 1800.81559 37416.5938614207 1.9683 0.0011835 127040 76.387 127040 76.388 677.666182827619 51.305 0.69575 51.305 50.879 51.575 0 51 23 3 0.761895391652962 0.00237849369614996 0.0255863333962151 3.0872E-07 1 11913 148.76 137.81 4 22586000 14802 13383 16256 11883 11093 16616 11777 12381 11531 4595.2 14012 12634 16223 12369 11572 16399 11949 12722 11388 4613.5 1 1 1 1 1 1 1 1 1 1 3323 1856 2927 3103 3683 3683 3390 NSPPFLK 7 Phospho (STY) _NS(ph)PPFLK_ NS(1)PPFLK NS(88.39)PPFLK 0 0 1 0 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.872131347656 2 441.709686 881.40482 38217.0192011423 1.8479 0.00081626 518810 229.16 518810 229.16 670.872596515921 70.523 0.67036 70.523 70.185 70.855 0 67 22 4 0.993058273083878 0.00226411474565247 0.0107879171509927 0.00993 1 16518 88.392 49.638 1 92237000 36126 29630 35254 28082 18270 34069 19023 25628 32802 6095.5 34181 27982 35343 29024 19567 33787 19705 26218 31781 6332.8 1 1 1 1 1 1 1 1 1 1 3324 1204 2928 3104 3684 3684 2114 NSPTFKSFEEK 11 Phospho (STY) _NSPTFKS(ph)FEEK_ NSPTFKS(1)FEEK NS(-66.4)PT(-35.42)FKS(35.42)FEEK 0 0 1 1 P55327 P55327 P55327 TPD52 Tumor protein D52 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.370361328125 3 465.20603 1392.59626 35856.4151451819 2.3035 0.0010716 492610 229.16 492610 229.16 694.3691426445 67.266 1.3134 67.266 66.573 67.887 0 149 44 6 0.990536710836505 0.0181227875468935 0.362154032423714 8.2054E-07 2 15767 139.29 100.3 3 162980000 169890 15370 177420 15494 17792 174520 19433 65502 15814 12434 160790 14520 176270 18457 27500 166490 19604 70302 15758 13224 2 2 2 2 2 2 2 2 2 2 3325 723 2929 3105 3685;3686 3685 1205 NSPTFKSFEEKVENLK 16 Phospho (STY) _NSPTFKS(ph)FEEKVENLK_ NS(0.069)PT(0.008)FKS(0.923)FEEKVENLK NS(-11.25)PT(-20.57)FKS(11.25)FEEKVENLK 0 0 1 2 P55327 P55327 P55327 TPD52 Tumor protein D52 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.153625488281 4 494.989582 1975.92922 37547.1031897779 2.6643 0.0013188 462970 229.16 462970 229.16 724.152612513394 98.422 0.69887 98.422 98.05 98.749 0 80 23 5 0.85476316690403 0.00200822286567623 0.0850524044914878 0.0039556 1 22808 90.884 75.63 3 20217000 17643 2973.9 18171 2846.2 4687.3 18479 5470.1 8999.7 2705.7 7206.8 16697 2808.6 18104 3181.4 5561.3 17720 5454.8 9611.9 2787 6994.3 1 1 1 1 1 1 1 1 1 1 3326 723 2930 3106 3687 3687 1205 NSPTFKSFEER 11 Phospho (STY) _NSPTFKS(ph)FEER_ NS(0.003)PT(0.015)FKS(0.982)FEER NS(-24.69)PT(-18.3)FKS(18.3)FEER 0 0 1 1 Q16890 Q16890 Q16890 TPD52L1 Tumor protein D53 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.317687988281 3 474.541413 1420.60241 38877.0155220591 1.4328 0.0006799 321940 152.78 321940 152.78 627.316612972282 60.748 0.81939 60.748 60.398 61.218 0 74 27 3 0.996182944668359 0.00998093573890142 0.113190720750422 0.00012578 1 14254 111.78 60.641 3 91384000 7102.6 104910 7016.7 95662 6493 5809.1 6254.9 41591 96460 4411.4 6720.5 99056 7063.5 97344 6701.9 10290 8848.6 40465 91351 5116.5 1 1 1 1 1 1 1 1 1 1 3327 1117 2931 3107 3688 3688 1942 NSPVTKTPPR 10 Phospho (STY) _NSPVTKT(ph)PPR_ NS(0.003)PVT(0.016)KT(0.981)PPR NS(-25)PVT(-17.8)KT(17.8)PPR 0 0 1 1 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 545.64013671875 3 392.863939 1175.56999 42641.8292697763 1.7152 0.00067383 388880 152.78 388880 152.78 545.639551443574 38.14 0.90319 38.14 37.48 38.383 -7.1054E-15 87 30 4 0.810612751824118 0.0049330385238378 0.0830259688897509 0.020601 1 8590 75.911 60.021 3 101850000 31967 20071 31595 19979 24704 31698 23544 24697 20264 2980.5 30247 18960 31749 20707 25457 31167 23932 25134 20134 3378 1 1 1 1 1 1 1 1 1 1 3328 964 2932 3108 3689 3689 1633;4543 NSQEDSEDSEDKDVK 15 Unmodified _NSQEDSEDSEDKDVK_ 0 0 0 1 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 804.738403320313 3 575.574625 1723.70205 34500.5446560486 2.09 0.0012029 398150 229.16 398150 229.16 805.07164842039 35.411 0.35246 35.411 35.269 35.622 0 35 11 4 0.981406648996856 0.00191478931321305 0.0551934813352301 9.7295E-16 1 7957 237.01 202.4 1 28099000 49614 23812 50439 22125 8638.1 49146 11260 26823 25401 2768 46951 22484 50235 23254 11284 47781 11723 27854 24463 3227.2 1 1 1 1 1 1 1 1 1 1 3329 1913 2933 3109 3690 3690 NSQEDSEDSEDKDVK 15 Phospho (STY) _NSQEDSEDS(ph)EDKDVK_ NSQEDSEDS(1)EDKDVK NS(-113.66)QEDS(-47.66)EDS(47.66)EDKDVK 0 0 1 1 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 831.728454589844 3 602.230069 1803.66838 34369.9765254767 2.5374 0.0015281 380520 229.16 380530 229.16 831.393130330474 38.428 1.8805 38.428 37.891 39.772 0 182 64 4 0.980524190911747 0.00273125900607495 0.0322414429164479 3.0531E-11 2 8630 207.43 184.96 3 44314000 58659 35434 61356 34860 29375 56997 27965 42726 42031 12056 55516 33470 61233 36184 31691 55987 28919 43774 40875 12341 2 2 2 2 2 2 2 2 2 2 3330 1913 2933 3110 3691;3692 3691 3473;3474 NSQEDSEDSEDKDVK 15 2 Phospho (STY) _NSQEDS(ph)EDS(ph)EDKDVK_ NSQEDS(1)EDS(1)EDKDVK NS(-42.19)QEDS(42.19)EDS(62.86)EDKDVK 0 0 2 1 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 858.048278808594 3 628.885512 1883.63471 NaN NaN NaN NaN NaN NaN NaN NaN 42.203 1 42.203 41.703 42.703 0 NaN NaN NaN 7.3665E-05 1 9641 119.87 95.862 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3331 1913 2933 3111 3693 3693 3473;3474 NSRDGDPLPSSLSCK 15 Phospho (STY) _NS(ph)RDGDPLPSSLSCK_ NS(1)RDGDPLPSSLSCK NS(74.82)RDGDPLPS(-74.82)S(-97.26)LS(-147.15)CK 0 0 1 1 P53602 P53602 P53602 MVD Diphosphomevalonate decarboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.356628417969 3 571.581831 1711.72366 36646.2777278777 1.7154 0.00098051 267280 152.77 267290 152.78 724.355856126844 59.766 0.59557 59.766 59.483 60.079 0 67 20 4 0.952912303234509 0.00273734600805875 0.0158071248547862 1.2719E-10 1 14019 188.68 158.53 4 28035000 12055 19801 11497 19769 20404 11001 19714 17281 22452 11400 11405 18705 11717 20160 20173 11518 20175 17435 22037 11134 1 1 1 1 1 1 1 1 1 1 3332 703 2934 3112 3694 3694 1181 NSRGNPK 7 Phospho (STY) _NS(ph)RGNPK_ NS(1)RGNPK NS(40)RGNPK 0 0 1 1 REV__A6NEH8 REV__A6NEH8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 437.572662353516 3 284.795636 851.36508 47524.9935525515 0.92213 0.00026262 536440 152.78 536440 152.78 437.572141164458 23.663 0.81285 23.663 23.44 24.253 0 70 27 4 0.950490161705178 0.0101020808128421 0.14465007423078 0.043019 1 5297 40.002 20.215 1 11125000 10955 15471 11664 14366 18951 11241 18842 16222 14788 4331.5 10369 14609 11793 14768 18796 11478 19074 16209 14763 4454.1 1 1 1 1 1 1 1 1 1 1 + 3333 2321 2935 3113 3695 3695 4277 NSSEASSGDFLDLK 14 Phospho (STY) _NS(ph)SEASSGDFLDLK_ NS(0.709)S(0.28)EAS(0.011)S(0.001)GDFLDLK NS(4.04)S(-4.04)EAS(-18.24)S(-28.15)GDFLDLK 0 0 1 0 Q9UK76 Q9UK76 Q9UK76 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.329833984375 3 517.218776 1548.6345 38234.4557567483 1.7271 0.00089328 295380 152.78 295380 152.78 669.993931312743 85.382 0.7463 85.382 85.068 85.814 0 73 25 4 0.822917735395922 0.00268995198232497 0.0291826872776354 0.012629 1 19915 66.416 44.544 4 14844000 6272.2 7292 6001.3 6486 6996.8 7667.4 7486 7509.8 8862.6 7422.8 5934.1 6883.9 6071.7 6727.8 7049.8 7644.7 7634.3 7762.7 8686.3 7163.3 1 1 1 1 1 1 1 1 1 1 3334 2168 2936 3114 3696 3696 3905 NSSEKLPTELSK 12 Phospho (STY) _NS(ph)SEKLPTELSK_ NS(0.966)S(0.034)EKLPTELSK NS(14.48)S(-14.48)EKLPT(-79.73)ELS(-129.96)K 0 0 1 1 P38432 P38432 P38432 COIL Coilin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.726379394531 3 471.560473 1411.65959 37344.7987635428 2.7741 0.0013081 485970 229.16 485970 229.16 700.723603823345 63.271 0.61638 63.271 62.99 63.606 0 80 20 6 0.87856080892368 0.00604215984300142 0.119527398460827 7.717E-11 1 14827 176.85 137.52 4 107470000 21294 32118 24677 30957 19064 19973 21584 25195 32478 7979.3 20162 30334 24590 31680 19724 20591 22148 25311 31584 8096.6 1 1 1 1 1 1 1 1 1 1 3335 563 2937 3115 3697 3697 914 NSSGPQSGWMK 11 Phospho (STY) _NSSGPQS(ph)GWMK_ NS(0.002)S(0.362)GPQS(0.636)GWMK NS(-25.18)S(-2.44)GPQS(2.44)GWMK 0 0 1 0 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 859.415405273438 2 629.749745 1257.48494 33469.3495422579 2.4873 0.0015664 363890 229.16 363900 229.16 859.41241067263 62.952 0.66998 62.952 62.644 63.314 -7.1054E-15 41 22 3 0.98057547199721 0.00120732818913071 0.0292147683190833 0.019236 1 14796 65.348 46.244 3 16540000 13063 20792 13558 21970 14404 15122 14501 17431 24867 13036 12363 19648 13634 22376 14579 15517 15040 17788 24097 12679 1 1 1 1 1 1 1 1 1 1 3336 1774 2938 3116 3698 3698 3271 NSSLLSFDNEDENE 14 Unmodified _NSSLLSFDNEDENE_ 0 0 0 0 Q96AT1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.417785644531 2 806.834096 1611.65364 33015.3931066146 1.9363 0.0015623 142010 114.58 142010 114.58 921.412759465709 77.494 0.49573 77.494 77.225 77.721 -1.4211E-14 42 16 4 0.884863872632225 0.0022186451283712 0.0600228942205719 6.1303E-10 1 18155 192.5 161.81 1 22719000 9585.8 7468.8 8999.5 6836.9 8245.1 10561 8019.6 8728.7 8553.7 32998 9068.4 7052 9086.1 7118.4 8409 10459 8188.8 9820.8 8417.3 31273 1 1 1 1 1 1 1 1 1 1 3337 1649 2939 3117 3699 3699 NSSLLSFDNEDENE 14 Phospho (STY) _NSSLLS(ph)FDNEDENE_ NS(0.001)S(0.003)LLS(0.996)FDNEDENE NS(-30.1)S(-24.86)LLS(24.86)FDNEDENE 0 0 1 0 Q96AT1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 961.901489257813 2 846.817261 1691.61997 31929.6085783252 1.6137 0.0013665 135310 114.58 135310 114.58 961.398553296993 83.039 2.7086 83.039 82.71 85.419 -1.4211E-14 222 93 4 0.883635586920056 0.0022616579972826 0.0900010391123268 0.00025216 3 19554 108.71 100.18 3 48752000 14623 17068 16019 16658 15499 14462 13984 18644 16358 71915 13843 16121 16041 17094 15740 14782 14372 20707 16039 68148 3 3 3 3 3 3 3 3 3 3 3338 1649 2939 3118 3700;3701;3702 3701 3043 NSSNTSVGSPSNTIGR 16 Phospho (STY) _NSSNTSVGS(ph)PSNTIGR_ NSSNTS(0.013)VGS(0.972)PS(0.014)NTIGR NS(-85.43)S(-59.61)NT(-41.38)S(-18.77)VGS(18.29)PS(-18.29)NT(-37.37)IGR 0 0 1 0 Q7Z460 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 944.44580078125 2 829.362505 1656.71046 32188.5544666714 1.0497 0.00087059 138160 114.58 138160 114.58 943.944756708718 36.945 0.55727 36.945 36.598 37.155 0 44 18 3 0.982527778079593 0.000555029960111715 0.00526948461131923 1.7113E-05 1 8316 135.95 117.17 7 14826000 6673.2 8591.2 8183.1 7823.2 5209 7727.8 4506 7630.5 9480.3 2564.1 6320.2 8111.5 8115.4 8078 5456.5 7753.9 4756.7 7735 9143.2 2591 1 1 1 1 1 1 1 1 1 1 3339 1338 2940 3119 3703 3703 2414 NSSPAPPQPAPGK 13 Phospho (STY) _NSS(ph)PAPPQPAPGK_ NS(0.005)S(0.995)PAPPQPAPGK NS(-23.39)S(23.39)PAPPQPAPGK 0 0 1 0 Q9NYV4 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 893.470581054688 2 664.305742 1326.59693 33836.240539492 2.1128 0.0014036 344970 229.16 344970 229.16 893.469185945844 38.996 0.44301 38.996 38.754 39.197 0 39 14 4 0.980457968001729 0.00124842252289491 0.0286964234132389 3.4348E-11 1 8854 208.05 163.44 2 14959000 14190 14960 12868 15036 12236 13535 12012 13488 15730 4440.4 13422 14133 13026 15410 12455 13642 12340 13665 15364 4493.3 1 1 1 1 1 1 1 1 1 1 3340 2077 2941 3120 3704 3704 3763 NSSPGEASLLEK 12 Phospho (STY) _NSS(ph)PGEASLLEK_ NS(0.003)S(0.997)PGEASLLEK NS(-25.15)S(25.15)PGEAS(-46.19)LLEK 0 0 1 0 Q76FK4 Q76FK4 Q76FK4 NOL8 Nucleolar protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 885.459655761719 2 656.29504 1310.57553 32902.1016673262 2.2504 0.0014769 349180 229.16 349180 229.16 885.458268166675 66.656 0.65874 66.656 66.403 67.062 0 50 22 3 0.977138368715349 0.00132273872298821 0.0433823513055474 5.0124E-11 1 15638 199.33 129.68 3 15063000 17747 18575 15612 17368 10233 15956 10421 13723 16592 17979 16786 17540 15777 17884 10711 16063 10768 14394 16110 17247 1 1 1 1 1 1 1 1 1 1 3341 1312 2942 3121 3705 3705 2343;2344 NSSPGEASLLEK 12 Phospho (STY) _NS(ph)SPGEASLLEK_ NS(0.654)S(0.346)PGEASLLEK NS(2.76)S(-2.76)PGEAS(-34.39)LLEK 0 0 1 0 Q76FK4 Q76FK4 Q76FK4 NOL8 Nucleolar protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.976440429688 3 437.865785 1310.57553 41027.2348341272 1.8012 0.0007887 348910 152.78 348910 152.78 590.640925432066 66.669 0.60328 66.669 66.374 66.978 0 59 20 4 0.94014088928644 0.00399226134908341 0.0622859067590719 0.001985 1 15661 95.761 58.57 3 16275000 11266 10818 10420 11092 7387.4 11305 7916.3 12188 12197 4449.5 10658 10221 10505 11376 7687.3 11342 8149.9 12325 11853 4471.8 1 1 1 1 1 1 1 1 1 1 3342 1312 2942 3121 3706 3706 2343;2344 NSSQSGGKPGSSPITK 16 Phospho (STY) _NSSQSGGKPGSS(ph)PITK_ NSSQSGGKPGS(0.147)S(0.847)PIT(0.006)K NS(-57.02)S(-50.94)QS(-44.13)GGKPGS(-7.62)S(7.62)PIT(-21.34)K 0 0 1 1 Q15648 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.415954589844 3 537.91732 1610.73013 36263.8852777014 2.4144 0.0012988 426020 229.16 426020 229.16 767.414948750855 41.323 0.48676 41.323 41.082 41.569 0 51 16 4 0.96339507523935 0.00162547261461712 0.0163967365700715 0.008106 1 9452 79.143 57.942 6 29181000 23285 19161 22128 19201 10945 25599 11784 20114 21139 15135 22029 18101 22213 19816 11788 25333 12211 20844 20461 14717 1 1 1 1 1 1 1 1 1 1 3343 1084 2943 3122 3707 3707 1881 NSSTPGLQVPVSPTVPIQNQK 21 Phospho (STY) _NSSTPGLQVPVS(ph)PTVPIQNQK_ NSSTPGLQVPVS(0.999)PT(0.001)VPIQNQK NS(-100.68)S(-101.02)T(-95.6)PGLQVPVS(31.96)PT(-31.96)VPIQNQK 0 0 1 0 Q03164 Q03164 Q03164 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 910.826354980469 3 757.717535 2270.13078 33091.0409554952 1.8103 0.0013717 201630 152.78 201630 152.78 910.827438492603 76.789 0.63792 76.789 76.332 76.969 0 62 21 5 0.955106082533465 0.00444066566604394 0.076047178527981 7.5513E-08 1 17991 152.5 136.01 5 35278000 4144 9750.3 5958.1 11892 5550.2 4742.9 6416.6 7670.1 12320 14635 3928.1 9223 5891.8 11965 5674.3 5137.4 6651.7 8021.2 11906 13958 1 1 1 1 1 1 1 1 1 1 3344 857 2944 3123 3708 3708 1384 NTEESSSPVRK 11 Phospho (STY) _NTEESSS(ph)PVRK_ NTEES(0.016)S(0.013)S(0.971)PVRK NT(-56.08)EES(-17.88)S(-18.69)S(17.88)PVRK 0 0 1 1 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.305603027344 3 438.529285 1312.56602 40606.9568815222 2.2261 0.00097623 348380 152.78 348380 152.78 591.304613688593 30.194 0.51135 30.194 29.954 30.465 3.5527E-15 67 16 5 0.992641186513483 0.027917786070709 0.568865294254541 9.6833E-07 1 6731 139 95.392 4 188910000 62105 57146 61128 60560 48489 71231 45492 59820 58365 3343.4 58763 54003 61448 62144 49923 70785 46803 60546 57043 4532.6 1 1 1 1 1 1 1 1 1 1 3345 1183 2945 3124 3709 3709 2065 NTFTAWSDEESDYEIDDRDVNK 22 Phospho (STY) _NTFTAWS(ph)DEESDYEIDDRDVNK_ NTFTAWS(1)DEESDYEIDDRDVNK NT(-89.23)FT(-55.24)AWS(53.77)DEES(-53.77)DY(-141.05)EIDDRDVNK 0 0 1 1 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1063.47912597656 3 910.367736 2728.08138 30437.2848538889 2.0728 0.001887 167820 152.78 167820 152.78 1063.47815025899 77.998 0.97337 77.998 77.69 78.664 0 111 33 5 0.908408542134159 0.000686572924998936 0.0222208910611247 8.5692E-13 2 18370 210.45 195.41 5 26339000 4704.2 5645.1 5296.9 5509.2 4850.1 4190.4 5265.6 6168.4 5101.7 105680 4453.6 5332 5294.9 5643.8 4954 4482.9 5335.4 9295.1 5040.8 99653 2 2 2 2 2 2 2 2 2 2 3346 1273 2946 3125 3710;3711 3711 2261 NTGSPDRKPSK 11 Phospho (STY) _NTGS(ph)PDRKPSK_ NT(0.205)GS(0.795)PDRKPSK NT(-5.9)GS(5.9)PDRKPS(-51.49)K 0 0 1 2 Q9UIG0 Q9UIG0 Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.029907226563 3 422.86612 1265.57653 38644.9345902631 2.7204 0.0011504 541930 229.16 541930 229.16 652.029026497967 29.976 0.47572 29.976 29.778 30.254 0 45 15 4 0.884264605225737 0.00313459820743524 0.049970561266146 0.0060943 1 6675 89.866 76.203 3 65269000 17280 21037 18973 21057 11894 17070 15222 19085 22182 3826.4 16357 19873 18927 21556 12542 17320 15525 19181 21592 4044.7 1 1 1 1 1 1 1 1 1 1 3347 2158 2947 3126 3712 3712 3887 NTGVSPASRPSPGTPTSPSNLTSGLK 26 Phospho (STY) _NTGVSPASRPSPGTPTS(ph)PSNLTSGLK_ NTGVSPASRPS(0.001)PGT(0.022)PT(0.148)S(0.68)PS(0.148)NLTSGLK NT(-115.17)GVS(-66.96)PAS(-46.95)RPS(-27.9)PGT(-14.96)PT(-6.61)S(6.61)PS(-6.61)NLT(-37.58)S(-43.85)GLK 0 0 1 1 Q5VT52 Q5VT52 Q5VT52 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1017.19927978516 3 864.088468 2589.24357 31438.4207182702 1.6604 0.0014347 176810 152.78 176810 152.78 1017.19783088481 63.686 0.66385 63.686 63.343 64.007 0 97 22 5 0.982715049542708 0.00410581024322677 0.0472744862690464 6.3035E-12 1 14922 187.32 160.19 10 37763000 12804 10483 12985 9694.4 8545.1 14061 9960.7 11816 10384 10214 12117 9898.4 13013 10072 8954.2 13890 10083 12247 10228 9891.5 1 1 1 1 1 1 1 1 1 1 3348 1201 2948 3127 3713 3713 2102 NTSLPPLWSPEAER 14 Phospho (STY) _NTSLPPLWS(ph)PEAER_ NTSLPPLWS(1)PEAER NT(-101.77)S(-89.72)LPPLWS(89.72)PEAER 0 0 1 0 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 953.471618652344 2 838.887627 1675.7607 31580.7481963388 1.2842 0.0010773 136590 114.58 136590 114.58 953.4695556144 85.757 0.74067 85.757 85.477 86.217 0 77 25 4 0.981314587303308 0.00161041726586642 0.0309006125100065 8.8127E-16 1 19998 231.85 203.23 3 23442000 7196 11452 9097.9 10128 6810 7785.5 6499.5 9185.8 11481 25992 6816.4 10810 9023.1 10442 7046.2 7974.8 6767.3 9942.9 11117 24687 1 1 1 1 1 1 1 1 1 1 3349 654 2949 3128 3714 3714 1089 NTTSSPCK 8 Phospho (STY) _NTTSS(ph)PCK_ NT(0.017)T(0.04)S(0.251)S(0.692)PCK NT(-16.2)T(-12.34)S(-4.41)S(4.41)PCK 0 0 1 0 Q7Z5J4 Q7Z5J4 Q7Z5J4 RAI1 Retinoic acid-induced protein 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.850158691406 2 487.686082 973.357611 NaN NaN NaN NaN NaN NaN NaN NaN 29.109 1 29.109 28.609 29.609 0 NaN NaN NaN 0.022294 1 6482 79.889 58.917 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3350 1348 2950 3129 3715 3715 2434 NTVDLVTTCHIHSSSDDEIDFK 22 Phospho (STY) _NTVDLVTTCHIHSS(ph)SDDEIDFK_ NTVDLVTTCHIHS(0.013)S(0.494)S(0.494)DDEIDFK NT(-93.52)VDLVT(-52.83)T(-44.52)CHIHS(-15.81)S(0)S(0)DDEIDFK 0 0 1 0 Q5H9R7 Q5H9R7 Q5H9R7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.868530273438 4 654.034821 2612.11018 35430.0416996502 2.2246 0.0014549 175190 114.58 175190 114.58 768.867157356961 74.268 1.0172 74.268 73.983 75.001 0 101 34 4 0.627722626755369 0.00388072311855095 0.0923328719987831 6.3166E-12 1 17452 189.86 156.51 6 18947000 6559.6 9359.9 8365.6 9014.6 8168.4 8618.4 7251.8 8349.9 10814 72246 6213.8 8840 8315.7 9270.6 8291.3 8789.1 7523.3 10563 10519 68222 1 1 1 1 1 1 1 1 1 1 3351 1163 2951 3130 3716 3716 2012;2013 NVAEALGHSPKDPGGGGGPVR 21 Phospho (STY) _NVAEALGHS(ph)PKDPGGGGGPVR_ NVAEALGHS(1)PKDPGGGGGPVR NVAEALGHS(130.25)PKDPGGGGGPVR 0 0 1 1 Q8IU81 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.579162597656 4 513.746918 2050.95857 39807.2883243289 0.90836 0.00046667 223030 114.58 223030 114.58 628.3299257765 52.093 0.60054 52.093 51.806 52.406 0 65 20 4 0.893219891835131 0.00238967723949631 0.0231378013381545 1.9575E-05 1 12095 130.25 92.015 1 53171000 9465 11947 8956.8 11717 12794 7520.5 9741.7 10594 11609 2712.2 8954.4 11285 9089.4 11978 12716 7769.1 10114 10589 11375 2799 1 1 1 1 1 1 1 1 1 1 3352 1407 2952 3131 3717 3717 2561 NVAEALGHSPKDPGGGGGPVR 21 Phospho (STY) _NVAEALGHS(ph)PKDPGGGGGPVR_ NVAEALGHS(1)PKDPGGGGGPVR NVAEALGHS(97.06)PKDPGGGGGPVR 0 0 1 1 Q8IU81 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.771301269531 3 684.660132 2050.95857 35503.5326690549 1.0948 0.00074955 223140 152.78 223140 152.78 837.770583318498 52.089 0.45947 52.089 51.863 52.323 -7.1054E-15 42 15 4 0.931252480255383 0.000990364215679201 0.00561208233003539 0.0016696 1 12133 97.063 83.022 1 19846000 12371 14709 13685 14601 15577 12625 14801 14202 15886 12891 11712 13894 13726 14967 15686 12787 15133 14573 15629 12467 1 1 1 1 1 1 1 1 1 1 3353 1407 2952 3131 3718 3718 2561 NVALLSQLYHSPAR 14 Phospho (STY) _NVALLSQLYHS(ph)PAR_ NVALLSQLYHS(1)PAR NVALLS(-61.13)QLY(-45.86)HS(45.86)PAR 0 0 1 0 Q15717 Q15717 Q15717 ELAVL1 ELAV-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.002197265625 3 550.278412 1647.81341 39258.517814498 1.8467 0.0010162 138820 76.388 138820 76.389 626.666044195742 81.94 0.72107 81.94 81.593 82.314 0 89 24 5 0.986693916759608 0.00560120670893259 0.106924869602081 1.7141E-07 1 19144 168.79 139.81 3 60643000 4229.6 4660.5 4968.5 4526.5 4285.5 5256.8 3329.9 4403.5 4648.4 5790.8 4005 4401.8 4950.3 4667.6 4377 5236.7 3471.5 4624.6 4530.7 5554.7 1 1 1 1 1 1 1 1 1 1 3354 1089 2953 3132 3719 3719 1890 NVALLSQLYHSPARR 15 Phospho (STY) _NVALLSQLYHS(ph)PARR_ NVALLSQLYHS(1)PARR NVALLS(-78.2)QLY(-50.44)HS(50.44)PARR 0 0 1 1 Q15717 Q15717 Q15717 ELAVL1 ELAV-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.034851074219 3 602.312115 1803.91452 38507.6829246187 1.8271 0.0011005 126820 76.388 126830 76.389 678.699675213691 74.479 0.57983 74.479 74.218 74.797 0 61 19 4 0.949185250327691 0.00386018409793217 0.0981996765906392 4.4428E-05 1 17475 130.25 108.71 3 20452000 6429.6 6353.1 6197.8 7463.7 4357.8 6712.5 5735 6369.6 6628.6 5775 6083.2 6007.9 6234.2 7583.6 4551.3 6768.4 5796 6576.5 6502.6 5585.3 1 1 1 1 1 1 1 1 1 1 3355 1089 2954 3133 3720 3720 1890 NVDAAVSPR 9 Phospho (STY) _NVDAAVS(ph)PR_ NVDAAVS(1)PR NVDAAVS(48.66)PR 0 0 1 0 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.3115234375 2 504.729139 1007.44372 39452.963927478 1.4031 0.0007082 227020 114.58 227020 114.58 619.310568879711 37.834 0.52582 37.834 37.597 38.123 0 31 17 3 0.830899185841275 0.000699807771377247 0.0204245253289151 0.051865 1 8540 48.659 21.178 1 12173000 18391 17086 15803 15824 14827 17269 13768 16887 16780 2963.2 17393 16133 16048 16347 15092 17246 14148 17043 16429 3181 1 1 1 1 1 1 1 1 1 1 3356 1756 2955 3134 3721 3721 3233 NVHSEDFENR 10 Phospho (STY) _NVHS(ph)EDFENR_ NVHS(1)EDFENR NVHS(114.79)EDFENR 0 0 1 0 Q9H2P0 Q9H2P0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.341674804688 2 663.759156 1325.50376 35663.1001052545 1.1564 0.00076754 172630 114.58 172630 114.58 778.340579059349 33.976 0.25937 33.976 33.875 34.134 0 15 8 2 0.964169537212942 0.000465845630225026 0.0206468326563294 0.00028929 1 7623 114.79 88.662 1 10674000 13831 15129 13638 17244 18652 14374 17537 15619 16120 4346.7 13087 14304 13804 17530 18615 14559 17866 15749 15966 4454.5 1 1 1 1 1 1 1 1 1 1 3357 1921 2956 3135 3722 3722 3488 NVMSAFGLTDDQVSGPPSAPAEDR 24 Phospho (STY) _NVMSAFGLTDDQVSGPPS(ph)APAEDR_ NVMSAFGLTDDQVSGPPS(1)APAEDR NVMS(-94.26)AFGLT(-69.29)DDQVS(-37.06)GPPS(37.06)APAEDR 0 0 1 0 Q92734 Q92734 Q92734 TFG Protein TFG MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 924.094604492188 3 847.703626 2540.08905 NaN NaN NaN NaN NaN NaN NaN NaN 93.727 1 93.727 93.227 94.227 0 NaN NaN NaN 0.00024542 1 21820 110.38 96.068 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3358 1617 2957 3136 3723 3723 2984 NVPPGLDEYNPFSDSRTPPPGGVK 24 Phospho (STY) _NVPPGLDEYNPFSDS(ph)RTPPPGGVK_ NVPPGLDEY(0.001)NPFS(0.147)DS(0.426)RT(0.426)PPPGGVK NVPPGLDEY(-28.84)NPFS(-4.61)DS(0)RT(0)PPPGGVK 0 0 1 1 O15126 O15126 O15126 SCAMP1 Secretory carrier-associated membrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.641296386719 4 655.807438 2619.20065 37912.3985025619 1.5555 0.0010201 174720 114.58 174720 114.58 770.640175479386 86.032 0.97633 86.032 85.387 86.363 -1.4211E-14 55 33 2 0.730948510450871 0.00170404575229221 0.105563899806854 9.7779E-05 1 20098 103.95 89.938 4 6593900 5659.7 3784.9 5715 4796.9 4814.8 5725.1 4864.2 6887.4 4649.3 18939 5355.8 3581.2 5740.5 4878.5 4939.8 5747.4 4943.1 7434.2 4596.6 17993 1 1 1 1 1 1 1 1 1 1 3359 79 2958 3137 3724 3724 141;4323 NVPQEESLEDSDVDADFK 18 Unmodified _NVPQEESLEDSDVDADFK_ 0 0 0 0 O00505 O00505 O00505 KPNA3 Importin subunit alpha-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 832.417297363281 3 679.635885 2035.88582 34080.7710953025 2.0514 0.0013942 224790 152.77 224790 152.78 832.410805875724 72.225 0.73341 72.225 71.809 72.542 0 52 24 4 0.972187728854617 0.00131993811579816 0.00999862879316524 3.8447E-05 1 16952 120.4 98.39 1 12952000 9709 7585.1 10977 9723 9134.7 10672 10453 11425 8032.2 16099 9192 7177.6 10960 9868.1 9395.1 10695 10511 11916 8028.1 15424 1 1 1 1 1 1 1 1 1 1 3360 51 2959 3138 3725 3725 NVSESPNRK 9 Phospho (STY) _NVSES(ph)PNRK_ NVS(0.005)ES(0.995)PNRK NVS(-22.73)ES(22.73)PNRK 0 0 1 1 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.916809082031 2 555.750602 1109.48665 35910.2832587897 2.3166 0.0012874 412350 229.16 412350 229.16 784.914208364563 28.609 0.46049 28.609 28.377 28.837 0 38 15 4 0.970074444889602 0.00130396084082391 0.032600683716843 0.00063353 1 6352 108.01 88.221 2 17212000 8988.2 15647 9180.7 14921 10967 8635.9 10466 11438 16960 2240.4 8505.9 14777 9254.3 15264 11023 8976.1 10855 11432 16459 2374.3 1 1 1 1 1 1 1 1 1 1 3361 952 2960 3139 3726 3726 1591 NVSSFPDDATSPLQENR 17 Phospho (STY) _NVSSFPDDATS(ph)PLQENR_ NVSSFPDDAT(0.063)S(0.937)PLQENR NVS(-118.61)S(-112.9)FPDDAT(-11.73)S(11.73)PLQENR 0 0 1 0 P52292 P52292 P52292 KPNA2 Importin subunit alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1094.00451660156 2 978.920384 1955.82621 30021.3881104462 1.8328 0.0017941 117050 114.58 117050 114.58 1093.50179802115 63.885 1.0739 63.885 63.403 64.477 -7.1054E-15 124 36 4 0.984896309411255 0.00129140586698701 0.035737288502699 5.7747E-31 1 14930 290.92 252.73 4 35256000 4320 9364 5025.4 10794 4640.9 5663.6 5300 6390.8 10514 9624.1 4090.5 8854 5016.2 10913 4746.6 5933.2 5506.1 6672.3 10153 9210.1 1 1 1 1 1 1 1 1 1 1 3362 689 2961 3140 3727 3727 1162 NVSSYEK 7 Phospho (STY) _NVSS(ph)YEK_ NVS(0.494)S(0.506)YEK NVS(-0.11)S(0.11)Y(-70.55)EK 0 0 1 0 Q9UNF0 Q9UNF0 Q9UNF0 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.848083496094 2 453.683865 905.353178 37899.3124989354 2.1638 0.00098166 505120 229.16 505120 229.16 682.846892984394 46.905 0.43516 46.905 46.687 47.122 0 35 14 3 0.988453928904253 0.0014257715291 0.0131586943804667 0.0011188 1 10826 121.61 65.35 3 19816000 20635 17892 20444 17640 59744 20370 59354 32625 16394 9052.6 19525 16901 21078 18172 58262 20467 59259 32524 17998 9279.2 1 1 1 1 1 1 1 1 1 1 3363 2204 2962 3141 3728 3728 3991 NVTELNEPLSNEER 14 Unmodified _NVTELNEPLSNEER_ 0 0 0 0 P61981 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.9892578125 3 548.600557 1642.77984 39656.4693243256 1.5226 0.00083529 139240 76.388 139240 76.388 624.988360347348 57.441 0.59962 57.441 57.16 57.76 7.1054E-15 59 20 5 0.887378504372078 0.00338051405264247 0.0652923419549984 5.6657E-07 1 13417 154.72 104.57 1 40398000 6775.2 8780.6 6597.9 8007.1 7254 8405.5 7489.1 8284.3 8896.8 5108.1 6410.4 8290.3 6662.3 8275 7327.3 8415.6 7650.5 8468.3 8718.8 5001.6 1 1 1 1 1 1 1 1 1 1 3364 753 2963 3142 3729 3729 NWGAVVRSPEGTPQK 15 Phospho (STY) _NWGAVVRS(ph)PEGTPQK_ NWGAVVRS(0.861)PEGT(0.139)PQK NWGAVVRS(7.93)PEGT(-7.93)PQK 0 0 1 1 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.385375976563 3 569.273438 1704.79848 36641.6654106613 1.9366 0.0011024 268370 152.78 268370 152.78 722.383522724721 62.069 0.45676 62.069 61.863 62.319 0 57 15 5 0.965636050001871 0.00516091649288646 0.0512403766641872 7.9997E-06 1 14562 137.05 103.75 2 48327000 29449 37143 34014 38209 22132 31317 20126 31909 39454 12532 27883 35094 33839 39056 23151 31729 21112 32361 38109 12539 1 1 1 1 1 1 1 1 1 1 3365 1387 2964 3143 3730 3730 2519 NWSGRGEGEQK 11 Phospho (STY) _NWS(ph)GRGEGEQK_ NWS(1)GRGEGEQK NWS(67.58)GRGEGEQK 0 0 1 1 Q86US8 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.962219238281 3 443.185741 1326.53539 41362.3617786383 1.4915 0.00066103 344720 152.78 344720 152.78 595.96142689959 39.409 0.5172 39.409 39.141 39.658 0 48 17 3 0.793954117033483 0.00298967878480393 0.0273084810068449 0.010688 1 8943 67.579 48.255 1 30682000 24104 21475 26558 22658 13379 23593 15374 22299 26881 5869 22818 20293 26443 23207 14394 23602 15869 22594 26035 6042.4 1 1 1 1 1 1 1 1 1 1 3366 1373 2965 3144 3731 3731 2487 NYGSYSTQASAAAATAELLK 20 Phospho (STY) _NYGS(ph)YSTQASAAAATAELLK_ NYGS(0.876)YS(0.124)T(0.001)QASAAAATAELLK NY(-40.19)GS(8.5)Y(-41.62)S(-8.5)T(-32.07)QAS(-63.96)AAAAT(-106.47)AELLK 0 0 1 0 O14828 O14828 O14828 SCAMP3 Secretory carrier-associated membrane protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.764587402344 3 699.656053 2095.94633 34055.657994867 1.6009 0.0011201 218360 152.77 218360 152.78 852.766203667776 95.419 0.45392 95.419 95.14 95.594 0 21 15 2 0.89255521509813 9.8274381852134E-05 0.00227161305107994 2.8122E-05 1 22176 123.62 99.581 7 12271000 6331.2 6936.6 6624.1 6735.1 6504.6 7438.7 6469.6 7078.8 8473.4 17726 5992.1 6551.6 6651.8 6939 6609.3 7453.7 6642.1 7648.6 8275.7 16855 1 1 1 1 1 1 1 1 1 1 3367 67 2966 3145 3732 3732 113 NYGYNPSPVKPEGLR 15 Phospho (STY) _NYGYNPS(ph)PVKPEGLR_ NYGYNPS(1)PVKPEGLR NY(-74.96)GY(-61.08)NPS(61.08)PVKPEGLR 0 0 1 1 Q15047 Q15047 Q15047 SETDB1 Histone-lysine N-methyltransferase SETDB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.056274414063 3 590.94521 1769.8138 35451.4453675345 1.8092 0.0010691 258530 152.77 258530 152.78 744.054364258475 60.445 0.72806 60.445 60.165 60.893 7.1054E-15 91 24 6 0.987762509846922 0.00342938687312096 0.021431326098457 9.0223E-05 1 14131 118.37 102.39 3 71143000 22357 20159 22001 16518 11608 24737 14532 19607 18950 15757 21154 19023 22053 17315 12439 24394 14773 20341 18511 15291 1 1 1 1 1 1 1 1 1 1 3368 1050 2967 3146 3733 3733 1812 NYPSQEELIK 10 Phospho (STY) _NYPS(ph)QEELIK_ NY(0.001)PS(0.999)QEELIK NY(-31.41)PS(31.41)QEELIK 0 0 1 0 P38398 P38398 P38398 BRCA1 Breast cancer type 1 susceptibility protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.460144042969 2 650.794675 1299.5748 33401.9916256537 2.3044 0.0014997 352130 229.16 352130 229.16 880.459233252986 67.11 0.7783 67.11 66.836 67.615 0 72 26 5 0.76625789498957 0.00172673263624646 0.0551312662439054 0.019452 1 15745 64.045 38.66 2 19994000 17627 13687 18357 13344 14145 18507 18516 17964 14499 20746 16682 12927 18399 13805 14661 18352 18528 18666 14476 19951 1 1 1 1 1 1 1 1 1 1 3369 562 2968 3147 3734 3734 911 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 Phospho (STY) _NYQQNYQNS(ph)ESGEKNEGSESAPEGQAQQR_ NYQQNYQNS(1)ESGEKNEGSESAPEGQAQQR NY(-218.92)QQNY(-181.45)QNS(45.91)ES(-45.91)GEKNEGS(-172.29)ES(-206.49)APEGQAQQR 0 0 1 1 P67809 P67809 P67809 YBX1 Nuclease-sensitive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 949.927001953125 4 835.096092 3336.35526 32099.9440060549 1.2192 0.0010182 137210 114.58 137210 114.58 950.17922742297 36.679 0.465 36.679 36.4 36.865 -7.1054E-15 64 15 6 0.976227579930291 0.00350040638356144 0.0195149132665433 5.1181E-46 2 8260 358.69 340.87 6 42992000 7530.1 8853 8025.4 7972.4 5654.4 9103.5 8501.2 9255.1 9388 36138 7127.2 8358.1 8029 8257.8 5919.2 9144.4 8541.1 10367 9225.5 34242 2 2 2 2 2 2 2 2 2 2 3370 785 2969 3148 3735;3736 3735 1258 NYQSQADIPIRSPFGIVK 18 Phospho (STY) _NYQSQADIPIRS(ph)PFGIVK_ NYQSQADIPIRS(1)PFGIVK NY(-98.63)QS(-53.28)QADIPIRS(53.28)PFGIVK 0 0 1 1 Q14966 Q14966 Q14966 ZNF638 Zinc finger protein 638 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 858.129760742188 3 705.020778 2112.0405 34430.5500591552 1.3396 0.00094445 216700 152.78 216700 152.78 858.130680673157 86.308 0.4607 86.308 86.072 86.533 1.4211E-14 41 15 4 0.932389225477627 0.00342004731603028 0.0905666164245066 1.7969E-07 1 20135 149.41 130.09 3 15454000 14941 16005 15419 16830 5581.7 15847 6954.3 14127 17996 17154 14140 15124 15381 17214 6275 15939 7315.3 14754 17288 16479 1 1 1 1 1 1 1 1 1 1 3371 1033 2970 3149 3737 3737 1776 NYSVGSRPLKPLSPLR 16 Phospho (STY) _NYSVGSRPLKPLS(ph)PLR_ NYSVGSRPLKPLS(1)PLR NY(-86.85)S(-56.02)VGS(-50.96)RPLKPLS(50.96)PLR 0 0 1 2 O60825 O60825 O60825 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.776000976563 3 621.999537 1862.97678 35598.7601986114 1.4883 0.0009257 245620 152.78 245620 152.78 774.775119703076 66.004 0.48242 66.004 65.748 66.23 0 26 15 2 0.994239510942187 0.00326342150813487 0.0520191368521226 0.00020555 1 15487 102.48 76.356 4 29650000 5935.3 20627 4533.9 19193 13655 5181.2 13965 14400 21691 11249 5611.1 19477 4758.2 19569 13330 5955.5 14412 14426 21075 10926 1 1 1 1 1 1 1 1 1 1 3372 157 2971 3150 3738 3738 266 NYSVGSRPLKPLSPLR 16 Phospho (STY) _NYSVGSRPLKPLS(ph)PLR_ NYS(0.003)VGS(0.003)RPLKPLS(0.994)PLR NY(-38.13)S(-24.78)VGS(-25.33)RPLKPLS(24.78)PLR 0 0 1 2 O60825 O60825 O60825 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.583374023438 4 466.751472 1862.97678 41910.0258969125 1.1225 0.00052392 245490 114.58 245490 114.58 581.583560834722 65.989 0.422 65.989 65.778 66.2 0 42 13 4 0.919130929323857 0.000972722675990822 0.0106793308932857 0.038228 1 15527 48.229 26.613 4 13781000 3346.7 7407.9 2513.5 6878 5768 3661.3 5981.1 5364.5 7535.4 1657.2 3163.7 6995 2619.1 7042.8 5665.7 3838 6120.5 5364.9 7369.2 1684.6 1 1 1 1 1 1 1 1 1 1 3373 157 2971 3150 3739 3739 266 NYTDEAIETDDLTIK 15 Unmodified _NYTDEAIETDDLTIK_ 0 0 0 0 O14818 O14818 O14818 PSMA7 Proteasome subunit alpha type-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.721069335938 3 580.94399 1739.81014 37024.7073765491 2.2111 0.0012845 262980 152.77 262980 152.78 734.053267017597 77.099 0.57357 77.099 76.766 77.339 0 53 19 4 0.423807924832141 0.00374841570661831 0.0355428779365552 9.4724E-11 2 18086 197.17 163.91 1 24017000 62999 52123 71348 54795 31364 68093 38579 55315 59846 21693 59645 49254 70888 56312 34311 67540 39506 56634 58148 21706 2 2 2 2 2 2 2 2 2 2 3374 66 2972 3151 3740;3741 3740 PASPDRFAVSAEAENK 16 Phospho (STY) _PAS(ph)PDRFAVSAEAENK_ PAS(1)PDRFAVSAEAENK PAS(59.44)PDRFAVS(-59.44)AEAENK 0 0 1 1 O15037 O15037 O15037 KHNYN Protein KHNYN MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.378845214844 3 590.268241 1767.78289 35815.2750468509 1.7621 0.0010401 258820 152.78 258830 152.78 743.378110251666 60.83 0.66845 60.83 60.398 61.067 0 47 22 3 0.97812624442789 0.00291751371143916 0.0319169304593447 4.0072E-11 1 14249 203.71 170.41 2 28690000 9894.4 13061 10550 14288 10144 10427 12711 13408 14462 52751 9365.1 12346 10585 14533 10356 10761 12864 14923 14195 49982 1 1 1 1 1 1 1 1 1 1 3375 76 2973 3152 3742 3742 134 PFSAPKPQTSPSPK 14 Phospho (STY) _PFSAPKPQTS(ph)PSPK_ PFSAPKPQT(0.054)S(0.909)PS(0.037)PK PFS(-34.7)APKPQT(-12.23)S(12.23)PS(-13.94)PK 0 0 1 1 Q01518 Q01518 Q01518 CAP1 Adenylyl cyclase-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 746.418884277344 3 516.920113 1547.73851 36879.9905512679 1.9868 0.001027 443320 229.16 443330 229.16 746.08281308809 60.844 0.72592 60.844 60.429 61.155 0 72 24 4 0.782064738632624 0.00306025258350282 0.0436687001058967 0.0089289 1 14236 76.526 56.43 4 28196000 18352 29179 18320 25101 21850 21629 25769 26384 32682 10087 17366 27541 18499 25966 22026 21913 26231 26585 31954 10108 1 1 1 1 1 1 1 1 1 1 3376 838 2974 3153 3743 3743 1352;1353 PGHVSPLQLTNIQVPQQALPTQR 23 Phospho (STY) _PGHVS(ph)PLQLTNIQVPQQALPTQR_ PGHVS(1)PLQLTNIQVPQQALPTQR PGHVS(54.94)PLQLT(-54.94)NIQVPQQALPT(-188.28)QR 0 0 1 0 P22670 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 944.845825195313 3 868.121555 2601.34284 32845.742500469 1.333 0.0011572 87992 76.388 87993 76.389 944.843144235312 85.638 0.51249 85.638 85.357 85.87 0 58 17 5 0.984420644362346 0.00301685014527843 0.0268914823453652 9.0532E-13 2 19977 203.78 177.31 3 18428000 5608.1 7149.6 7010.4 7449.1 4736.7 7144.9 5133.1 7492.8 8161.2 56461 5311.9 6755.7 6951.3 7625.3 4949.5 7286 5289 9203.7 7924.3 53339 2 2 2 2 2 2 2 2 2 2 3377 460 2975 3154 3744;3745 3745 754 PGPTPSGTNVGSSGRSPSK 19 Phospho (STY) _PGPTPSGTNVGSSGRS(ph)PSK_ PGPTPSGTNVGSSGRS(0.997)PS(0.002)K PGPT(-120.53)PS(-109.54)GT(-99.59)NVGS(-37.35)S(-33.76)GRS(27.12)PS(-27.12)K 0 0 1 1 P60468 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.394775390625 3 617.286183 1848.83672 35192.1335403447 2.0114 0.0012416 247500 152.78 247500 152.78 770.395909393382 37.875 0.70163 37.875 37.568 38.27 -7.1054E-15 107 23 6 0.994843233313283 0.0091620210872298 0.0666708600825847 3.4063E-16 1 8528 229.51 206.87 7 662150000 50235 34547 47683 40130 31520 54065 53618 55461 43896 7718.1 47526 32668 48005 41087 33244 53603 53251 55810 43725 8551.1 1 1 1 1 1 1 1 1 1 1 3378 740 2976 3155 3746 3746 1225 PGSLPLNAEACWPK 14 Phospho (STY) _PGS(ph)LPLNAEACWPK_ PGS(1)LPLNAEACWPK PGS(189.45)LPLNAEACWPK 0 0 1 0 Q01581 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.356262207031 3 540.581103 1618.72148 38466.5042894059 1.8051 0.00097583 282610 152.78 282610 152.78 693.356288213446 89.609 0.5771 89.609 89.321 89.898 0 55 19 4 0.950243692083691 0.000420426885929496 0.00247763556679301 1.3106E-10 1 20858 189.45 159.86 1 16593000 3432.1 10098 3964.4 9625.5 4582.7 4015.3 6011 7422.4 11570 10914 3249.6 9536.1 3971.6 9821.8 4639.5 4338.4 6202.4 7642 11180 10448 1 1 1 1 1 1 1 1 1 1 3379 840 2977 3156 3747 3747 1356 PGWLSSPTLGR 11 Phospho (STY) _PGWLSS(ph)PTLGR_ PGWLS(0.023)S(0.964)PT(0.013)LGR PGWLS(-16.25)S(16.25)PT(-18.66)LGR 0 0 1 0 Q5XPI4 Q5XPI4 Q5XPI4 RNF123 E3 ubiquitin-protein ligase RNF123 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.382141113281 2 625.800095 1249.58564 35764.7557505003 2.2455 0.0014052 183100 114.58 183100 114.58 740.381702322529 81.953 0.74788 81.953 81.622 82.37 0 68 25 3 0.887760326000298 0.0041140417667016 0.153864506624929 0.00011632 1 19162 124.04 107.84 3 35135000 14418 21196 14076 21314 13342 15803 16033 19901 24244 13748 13642 20024 14189 21789 13629 16164 16416 20218 23574 13406 1 1 1 1 1 1 1 1 1 1 3380 1218 2978 3157 3748 3748 2145 PKPSSSPVIFAGGQDR 16 Phospho (STY) _PKPSSS(ph)PVIFAGGQDR_ PKPS(0.078)S(0.232)S(0.691)PVIFAGGQDR PKPS(-9.48)S(-4.74)S(4.74)PVIFAGGQDR 0 0 1 1 Q15366 Q15366 Q15366 PCBP2 Poly(rC)-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.055725097656 3 574.94521 1721.8138 36378.8978213736 2.0322 0.0011684 265720 152.78 265720 152.78 727.720880822977 60.054 0.52131 60.054 59.792 60.314 -7.1054E-15 55 17 4 0.874555245979561 0.00328204331343711 0.0429983116276789 0.00034266 1 14063 100.76 82.164 3 25412000 15657 21467 16259 21793 15768 15417 14950 17853 24446 15065 14818 20281 16329 22254 16027 15797 15517 18267 23718 14599 1 1 1 1 1 1 1 1 1 1 3381 1071 2979 3158 3749 3749 1850 PLGSIQRPNSFLFR 14 Phospho (STY) _PLGSIQRPNS(ph)FLFR_ PLGS(0.002)IQRPNS(0.998)FLFR PLGS(-26.47)IQRPNS(26.47)FLFR 0 0 1 1 O75427 O75427 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.682373046875 3 571.294173 1710.86069 39049.7734856919 1.9465 0.001112 133710 76.387 133710 76.388 648.015772412328 89.915 0.84452 89.915 89.548 90.392 -1.4211E-14 82 28 4 0.653489009196509 0.00288328675271597 0.0530449510032296 0.0092525 3 20932 75.608 56.785 2 17422000 20397 18480 21089 17669 23895 21098 30088 24252 19171 27736 19304 17453 21242 18247 24161 21087 30031 25040 19379 26678 3 3 3 3 3 3 3 3 3 3 3382 186 2980 3159 3750;3751;3752 3751 324 PLKPLSPLR 9 Phospho (STY) _PLKPLS(ph)PLR_ PLKPLS(1)PLR PLKPLS(40.07)PLR 0 0 1 1 O60825 O60825 O60825 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 520.321411132813 3 367.54577 1099.61548 43823.5000794859 0.98995 0.00036385 415660 152.78 415660 152.78 520.321313580738 71.35 0.48833 71.35 71.117 71.605 0 41 16 3 0.958180116239878 0.00180866890216577 0.0720862567551133 0.041486 1 16749 40.066 16.461 1 10671000 1822.2 11062 2361.8 12600 4548.6 1868.2 5507.9 7256.2 16094 1604.2 1726.3 10459 2375.8 12671 4510.3 2422.2 5850.4 7118.1 15431 1678.5 1 1 1 1 1 1 1 1 1 1 3383 157 2981 3160 3753 3753 266 PLTSPLR 7 Phospho (STY) _PLTS(ph)PLR_ PLT(0.042)S(0.958)PLR PLT(-13.61)S(13.61)PLR 0 0 1 0 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 546.804992675781 2 432.222961 862.431369 42646.6799550453 1.3872 0.00059959 265100 114.58 265100 114.58 546.804316201207 60.959 0.989 60.959 60.459 61.448 0 97 33 4 0.716160471196247 0.00205136269173791 0.0568082115792757 0.013326 1 14241 82.563 17.829 2 68658000 15915 17410 16698 19809 12526 17826 12661 17609 22748 2588.1 15062 16460 16718 20161 12969 17958 13157 17750 22018 2844.6 1 1 1 1 1 1 1 1 1 1 3384 624 2982 3161 3754 3754 1030 PQPLISR 7 Phospho (STY) _PQPLIS(ph)R_ PQPLIS(1)R PQPLIS(42.29)R 0 0 1 0 REV__Q9Y4G8 REV__Q9Y4G8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 373.874084472656 3 297.488032 889.442268 50521.2355154366 -0.12813 -3.8117E-05 256770 76.386 256770 76.386 373.874271761714 25.048 1.0731 25.048 24.771 25.844 0 109 36 5 0.992711824562763 0.0407675796057871 0.35427735827627 0.040732 1 5576 42.287 6.8493 1 190080000 105270 65452 93304 106960 52682 58080 26963 55601 92259 1742.9 99569 62066 94094 106500 55559 60371 30469 55920 88263 2927.9 1 1 1 1 1 1 1 1 1 1 + 3385 2354 2983 3162 3755 3755 4311 PQTSPSPK 8 Phospho (STY) _PQTS(ph)PSPK_ PQT(0.005)S(0.993)PS(0.002)PK PQT(-22.97)S(22.97)PS(-27.17)PK 0 0 1 0 Q01518 Q01518 Q01518 CAP1 Adenylyl cyclase-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.370971679688 2 461.207508 920.400462 36937.6296244785 1.6518 0.00076184 496880 229.16 496880 229.16 690.370496559107 35.076 0.98431 35.076 34.52 35.505 0 54 27 2 0.794276467815277 0.00717772854417297 0.231015172859271 0.00099624 1 7836 115.41 55.504 3 219580000 71079 79503 74124 81118 74822 83458 96726 90482 92218 7638.4 67271 75113 74513 83228 76194 83652 97283 90718 91183 9286.6 1 1 1 1 1 1 1 1 1 1 3386 838 2984 3163 3756 3756 1352;1353 PSFSCNLIVWDSR 13 Phospho (STY) _PS(ph)FSCNLIVWDSR_ PS(0.5)FS(0.5)CNLIVWDSR PS(0)FS(0)CNLIVWDS(-46.49)R 0 0 1 0 REV__P18627 REV__P18627 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 945.442993164063 2 830.863098 1659.71164 31912.415614593 1.9626 0.0016307 137900 114.58 137910 114.58 945.443051009623 44.882 0.49707 44.882 44.596 45.093 0 47 16 4 0.982047050773144 0.00136892970397811 0.025949842902664 0.047299 1 10297 53.557 25.063 3 27037000 18727 15848 18288 16988 22688 19377 21008 18287 19043 4894.1 17718 14977 18490 17412 22739 19312 21411 18533 18873 5031.7 1 1 1 1 1 1 1 1 1 1 + 3387 2329 2985 3164 3757 3757 4286;4287 PSMSPTPLDR 10 Phospho (STY) _PSMS(ph)PTPLDR_ PSMS(0.979)PT(0.021)PLDR PS(-40.87)MS(16.73)PT(-16.73)PLDR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.340087890625 2 590.757039 1179.49952 37559.8749298776 1.7906 0.0010578 193960 114.58 193960 114.58 705.338778715705 57.422 0.88977 57.422 56.985 57.875 7.1054E-15 99 30 4 0.852581080759335 0.00211459865721894 0.0673487883563677 2.1567E-06 1 13374 156.02 125.46 3 50138000 24175 22657 21581 24780 11889 23977 14379 21910 26696 9548.3 22866 21416 21766 25301 12684 24061 14854 22345 25819 9498 1 1 1 1 1 1 1 1 1 1 3388 2226 2986 3165 3758 3758 4059 PSSGNIPSSPTASGGGSPTSPR 22 Phospho (STY) _PSSGNIPSSPTASGGGS(ph)PTSPR_ PSSGNIPSSPTAS(0.012)GGGS(0.905)PT(0.076)S(0.007)PR PS(-117.78)S(-117.99)GNIPS(-91.59)S(-71.76)PT(-41.71)AS(-18.64)GGGS(10.79)PT(-10.79)S(-21.33)PR 0 0 1 0 Q9UBW5 Q9UBW5 Q9UBW5 BIN2 Bridging integrator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.03466796875 3 693.311057 2076.91134 35849.6393658689 1.823 0.0012639 110180 76.388 110180 76.39 770.033201196787 43.981 0.5596 43.981 43.668 44.228 0 61 18 5 0.984800709560685 0.00503548802069168 0.0757637022441243 6.7846E-08 1 10093 143.99 125.6 9 35135000 11028 9220.6 15073 10412 13567 12517 16594 13395 9080 6146.9 10450 8717.2 14933 10651 13892 12475 16540 13587 9277.9 6098.1 1 1 1 1 1 1 1 1 1 1 3389 2131 2987 3166 3759 3759 3831 PSSPGGLPEEDSVLFNK 17 Phospho (STY) _PSS(ph)PGGLPEEDSVLFNK_ PS(0.481)S(0.519)PGGLPEEDSVLFNK PS(-0.33)S(0.33)PGGLPEEDS(-45.36)VLFNK 0 0 1 0 Q5R372 Q5R372 Q5R372 RABGAP1L Rab GTPase-activating protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.396667480469 3 618.283668 1851.82917 36115.8432578636 2.2136 0.0013686 247090 152.77 247100 152.78 771.393233016495 88.844 0.45886 88.844 88.596 89.055 1.4211E-14 36 15 3 0.957295332193171 0.00251541765630085 0.0189376343683199 0.011055 1 20725 71.314 58.114 3 8215600 8271.8 5244.9 7686.8 6056.5 4693.7 7969.1 5383.9 8073 6471.3 42611 7825.1 4959.3 7738.5 6199.8 4950.7 7984 5477 9377.7 6339.1 40310 1 1 1 1 1 1 1 1 1 1 3390 1176 2988 3167 3760 3760 2036 PSSSPVIFAGGQDR 14 Phospho (STY) _PSSS(ph)PVIFAGGQDR_ PSS(0.036)S(0.964)PVIFAGGQDR PS(-37.67)S(-14.26)S(14.26)PVIFAGGQDR 0 0 1 0 Q15366 Q15366 Q15366 PCBP2 Poly(rC)-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 863.923034667969 2 749.340313 1496.66607 33859.0145122071 1.6175 0.001212 152910 114.58 152910 114.58 863.921221483207 62.725 0.64916 62.725 62.461 63.11 0 51 21 3 0.724652709886334 0.00339731253952891 0.060351140515615 4.1652E-11 1 14745 208.81 166 3 38438000 21519 37391 20980 41365 17401 23988 20982 27771 42778 13115 20361 35345 21120 41950 17941 24892 21782 28105 41285 12992 1 1 1 1 1 1 1 1 1 1 3391 1071 2989 3168 3761 3761 1850 PTEATVSLSSLVDYPHQAR 19 Phospho (STY) _PTEATVSLS(ph)SLVDYPHQAR_ PTEATVS(0.001)LS(0.736)S(0.263)LVDYPHQAR PT(-54.62)EAT(-47.48)VS(-28.65)LS(4.48)S(-4.48)LVDY(-108.71)PHQAR 0 0 1 0 Q92619 Q92619 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.063110351563 3 717.675448 2150.00451 36129.1536181799 1.6463 0.0011815 106440 76.387 106440 76.389 794.397550494635 89.534 0.60731 89.534 89.233 89.841 0 50 20 3 0.689480827202142 0.000261412612147704 0.00253158721963809 1.5906E-07 1 20840 147.41 124.82 6 12471000 4450.6 4866.7 3894 3667 5097.4 4187.7 5191.1 4894.3 4161.6 20645 4209.3 4590.6 3967.9 3846.8 5102.2 4222 5251.4 5504 4149.9 19553 1 1 1 1 1 1 1 1 1 1 3392 1612 2990 3169 3762 3762 2974 PVSVAGSPLSPGPVR 15 Phospho (STY) _PVSVAGSPLS(ph)PGPVR_ PVSVAGSPLS(1)PGPVR PVS(-116.17)VAGS(-38.53)PLS(38.53)PGPVR 0 0 1 0 Q9Y4H2 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 576.97998046875 3 500.592108 1498.75449 41386.5428885178 1.452 0.00072688 152600 76.388 152600 76.389 576.980001211856 71.639 0.40732 71.639 71.401 71.809 1.4211E-14 32 13 3 0.97315424850244 0.00121871592674443 0.0140485035802071 4.6725E-07 1 16798 154.39 121.66 3 7853400 4848.3 3916 5107.8 4503 3261.3 5244.8 2971.3 4091.1 4390.2 3053.4 4588.7 3702.6 5105.2 4599.7 3415.9 5215.3 3077.4 4240.4 4271.6 2969.8 1 1 1 1 1 1 1 1 1 1 3393 2281 2991 3170 3763 3763 4216 QAASPLEPK 9 Phospho (STY) _QAAS(ph)PLEPK_ QAAS(1)PLEPK QAAS(101.89)PLEPK 0 0 1 0 Q14980 Q14980 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.904541015625 2 510.741715 1019.46888 38213.8500252975 1.5552 0.00079428 448690 229.16 448690 229.16 739.904998756489 48.098 0.38775 48.098 47.889 48.276 0 16 12 2 0.619550135908943 0.000655514914804233 0.00785042719600841 0.00067618 1 11160 101.89 73.49 1 10145000 16099 20998 17088 21295 18154 16320 18172 18079 20440 10769 15237 19838 17163 21767 18362 16623 18559 18391 20072 10559 1 1 1 1 1 1 1 1 1 1 3394 1036 2992 3171 3764 3764 1791 QAEMLDDLMEK 11 Unmodified _QAEMLDDLMEK_ 0 0 0 0 P54819 P54819 P54819 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.313781738281 3 441.537073 1321.58939 41564.7260372395 1.7783 0.00078517 346010 152.78 346010 152.78 594.312224231264 89.695 0.37909 89.695 89.548 89.927 0 32 12 4 0.882688404190776 0.00100268385635988 0.0113131623480449 8.0292E-05 1 20916 123.64 88.955 1 5669700 5044.8 5860.7 5955.9 6179.3 5069.6 5788.6 5184.8 4882.5 6564.9 5076.9 4777.1 5538.2 5934.3 6319 5199.9 5817.8 5309.9 5085.6 6419 4893.6 1 1 1 1 1 1 1 1 1 1 3395 714 2993 3172 3765 3765 QAGGFLGPPPPSGKFS 16 Phospho (STY) _QAGGFLGPPPPS(ph)GKFS_ QAGGFLGPPPPS(0.622)GKFS(0.378) QAGGFLGPPPPS(2.16)GKFS(-2.16) 0 0 1 1 Q9UM00 Q9UM00 Q9UM00 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.034301757813 3 541.923746 1622.74941 37602.491974589 1.9366 0.0010495 281910 152.78 281910 152.78 695.033470578494 79.624 0.73716 79.624 79.222 79.959 0 58 25 3 0.919936608764026 0.00213677846515934 0.0110154982822521 0.028457 1 18660 54.223 37.729 2 7340700 4855.7 7258 4708.8 6586.9 5225.3 5485.9 4744 7775.4 7644.4 6965.7 4594.2 6852.5 4755.4 6786.5 5268.1 5589.8 4931.5 7920.4 7419.7 6739 1 1 1 1 1 1 1 1 1 1 3396 2196 2994 3173 3766 3766 3978 QAGSHSNSFR 10 Phospho (STY) _QAGSHSNS(ph)FR_ QAGS(0.012)HS(0.019)NS(0.969)FR QAGS(-19.16)HS(-17.13)NS(17.13)FR 0 0 1 0 P18433 P18433 P18433 PTPRA Receptor-type tyrosine-protein phosphatase alpha MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.3212890625 2 585.738026 1169.4615 NaN NaN NaN NaN NaN NaN NaN NaN 24.722 1 24.722 24.222 25.222 0 NaN NaN NaN 0.049378 1 5526 56.139 36.378 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3397 427 2995 3174 3767 3767 686 QALLGDSGSQNWSTGTTDK 19 Phospho (STY) _QALLGDSGS(ph)QNWSTGTTDK_ QALLGDS(0.026)GS(0.974)QNWSTGTTDK QALLGDS(-15.74)GS(15.74)QNWS(-58.4)T(-64.84)GT(-74.78)T(-80.18)DK 0 0 1 0 O43752 O43752 O43752 STX6 Syntaxin-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.739562988281 3 682.631908 2044.87389 34111.3089360876 2.0808 0.0014204 223800 152.78 223810 152.78 835.740853441806 72.749 0.41335 72.749 72.514 72.927 0 24 13 3 0.948145461108636 0.000776456165205159 0.0135253396597922 1.9345E-05 1 17070 128.38 106.26 6 10203000 7819.1 8943.1 7305.2 8294.5 12104 7783.8 11499 11129 9108.3 24510 7397 8444.6 7443.1 8547.9 11989 7913 11669 11772 9088.6 23337 1 1 1 1 1 1 1 1 1 1 3398 126 2996 3175 3768 3768 218 QAQTQTSPEHLVLQQK 16 Phospho (STY) _QAQTQTS(ph)PEHLVLQQK_ QAQT(0.031)QT(0.122)S(0.846)PEHLVLQQK QAQT(-14.31)QT(-8.4)S(8.4)PEHLVLQQK 0 0 1 0 Q9ULV3 Q9ULV3 Q9ULV3 CIZ1 Cip1-interacting zinc finger protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.424255371094 3 639.313962 1914.92006 35245.5407043033 1.7586 0.0011243 238970 152.77 238970 152.78 792.423250748087 59.714 0.71525 59.714 59.335 60.05 7.1054E-15 93 24 5 0.848878339054719 0.00680199930571493 0.0286191705596391 8.4438E-16 1 14004 218.07 173.88 3 71180000 27999 44797 23652 43487 26091 29245 26507 34046 48911 11502 26478 42311 24097 44502 26360 30031 27575 34311 47311 11619 1 1 1 1 1 1 1 1 1 1 3399 2191 2997 3176 3769 3769 3970 QASIELPSMAVASTK 15 Oxidation (M),Phospho (STY) _QAS(ph)IELPSM(ox)AVASTK_ QASIELPSM(1)AVASTK QAS(1)IELPSMAVASTK QASIELPSM(129.02)AVASTK QAS(48.34)IELPS(-48.34)MAVAS(-107.33)T(-110.88)K 0 1 1 0 P33241 P33241 P33241 LSP1 Lymphocyte-specific protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.368041992188 3 543.591556 1627.75284 36939.927784309 1.849 0.0010051 281050 152.78 281050 152.78 696.701626121542 71.286 0.7219 71.286 70.739 71.461 0 64 24 4 0.94435890296648 0.0025444327538814 0.0521648669674472 4.5785E-05 1 16691 129.02 112.38 4 35823000 10179 6854.6 10805 7418 17496 13058 19031 11469 7364.2 8354 9634.2 6478.5 10929 7672.8 17370 12833 18978 11818 7761.1 8131.7 1 1 1 1 1 1 1 1 1 1 3400 531 2998 3177 3770 3770 71 862 QASIELPSMAVASTK 15 Phospho (STY) _QAS(ph)IELPSMAVASTK_ QAS(1)IELPSMAVASTK QAS(38.95)IELPS(-38.95)MAVAS(-91.42)T(-95.38)K 0 0 1 0 P33241 P33241 P33241 LSP1 Lymphocyte-specific protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.371398925781 3 538.259918 1611.75792 37788.5581777978 1.5945 0.00085824 283830 152.78 283830 152.78 691.369683663348 85.571 0.82989 85.571 85.213 86.043 0 127 28 6 0.875037717321086 0.00599070965814834 0.0359973131892313 0.0001033 1 19934 115.66 89.789 4 136740000 17687 8534 18739 8743.1 20862 16379 22414 16135 9037 9032 16740 8062.9 18838 9087 21055 16090 22375 16466 9484.2 8878.1 1 1 1 1 1 1 1 1 1 1 3401 531 2998 3178 3771 3771 862 QASLDGLQQLR 11 Phospho (STY) _QAS(ph)LDGLQQLR_ QAS(1)LDGLQQLR QAS(103.77)LDGLQQLR 0 0 1 0 Q3MII6 Q3MII6 Q3MII6 TBC1D25 TBC1 domain family member 25 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.402160644531 2 654.819016 1307.62348 35843.0969470795 1.6352 0.0010708 174980 114.58 174980 114.58 769.400957406443 68.664 0.55813 68.664 68.445 69.003 0 31 18 2 0.897369119998423 0.000961018023967044 0.0147677889196527 0.0002754 1 16121 103.77 77.853 1 14251000 17230 21347 17451 21695 19501 19950 18534 21062 23080 14641 16304 20167 17583 22226 19659 20117 19037 21525 22580 14274 1 1 1 1 1 1 1 1 1 1 3402 1130 2999 3179 3772 3772 1968 QASPTEVVER 10 Phospho (STY) _QAS(ph)PTEVVER_ QAS(0.591)PT(0.409)EVVER QAS(1.6)PT(-1.6)EVVER 0 0 1 0 Q8TB72 Q8TB72 Q8TB72 PUM2 Pumilio homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.85400390625 2 598.271368 1194.52818 36630.1668007921 1.9948 0.0011934 191520 114.58 191520 114.58 712.852888171913 41.357 0.88949 41.357 40.966 41.855 -7.1054E-15 86 30 4 0.942515084286234 0.00342107208156581 0.104223105481825 1.1966E-06 1 9400 164.93 99.752 2 89784000 32513 22357 29248 23918 32959 30547 32918 29248 24759 10656 30753 21129 29684 24570 33219 30326 33286 29710 24775 10711 1 1 1 1 1 1 1 1 1 1 3403 1537 3000 3180 3773 3773 2824 QASTGSELCSPSPGSGSFGEEPPAPQYTGPFCGR 34 Phospho (STY) _QAS(ph)TGSELCSPSPGSGSFGEEPPAPQYTGPFCGR_ QAS(0.688)T(0.195)GS(0.118)ELCSPSPGSGSFGEEPPAPQYTGPFCGR QAS(5.48)T(-5.48)GS(-7.67)ELCS(-44.17)PS(-75.49)PGS(-98.22)GS(-111.92)FGEEPPAPQY(-166.76)T(-168.75)GPFCGR 0 0 1 0 O75995 O75995 O75995 SASH3 SAM and SH3 domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1270.55334472656 3 1193.83247 3578.47558 27953.115155108 1.67 0.0019937 63985 76.388 63987 76.39 1270.55361878507 79.075 0.67082 79.075 78.664 79.334 0 50 22 3 0.950584480289221 0.000593733180655318 0.0113771120698153 2.7172E-12 2 18518 188.4 181.75 9 14060000 2970.6 1213.7 3102.4 810.88 5185.6 2348.5 7259.4 4964.6 1406.1 20422 2811.5 1144.2 3145.8 881.87 5163.1 2356.6 7129.5 5493.8 1635.7 19345 2 2 2 2 2 2 2 2 2 2 3404 208 3001 3181 3774;3775 3774 361 QATPGVPAQQSPSM 14 Oxidation (M),Phospho (STY) _QATPGVPAQQS(ph)PSM(ox)_ QATPGVPAQQSPSM(1) QATPGVPAQQS(0.999)PS(0.001)M QATPGVPAQQSPSM(191.84) QAT(-159.18)PGVPAQQS(29.52)PS(-29.52)M 0 1 1 0 O60341 O60341 O60341 KDM1A Lysine-specific histone demethylase 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.398498535156 2 747.818356 1493.62216 32459.0281112478 1.4008 0.0010475 153220 114.58 153220 114.58 862.399295420759 40.292 0.3217 40.292 40.063 40.384 0 15 10 2 0.946357782340829 0.000413720006466518 0.00799576314405005 1.7101E-10 1 9163 191.84 178.16 3 10998000 8166 7427 7991.1 8277.9 9195.8 8639 9035.1 9395.2 8225 5251.6 7726.5 7020.9 8071.1 8453.4 9257.7 8662.5 9182.5 9553 8149.9 5162.4 1 1 1 1 1 1 1 1 1 1 3405 144 3002 3182 3776 3776 16 245 QATPGVPAQQSPSM 14 Phospho (STY) _QATPGVPAQQS(ph)PSM_ QATPGVPAQQS(0.948)PS(0.052)M QAT(-71.74)PGVPAQQS(12.57)PS(-12.57)M 0 0 1 0 O60341 O60341 O60341 KDM1A Lysine-specific histone demethylase 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.905334472656 2 739.820899 1477.62724 33590.8097935958 0.89511 0.00066222 154880 114.58 154880 114.58 854.402191843059 52.104 0.51713 52.104 51.806 52.323 0 52 17 4 0.790429438992566 0.00145552689765989 0.0345550326472479 0.0091946 1 12093 86.43 76.477 3 36599000 14681 11025 13076 14631 14625 15042 14958 14332 14949 18272 13886 10435 13278 14809 14755 15084 15210 14954 14751 17537 1 1 1 1 1 1 1 1 1 1 3406 144 3002 3183 3777 3777 245 QATSPASK 8 Phospho (STY) _QATS(ph)PASK_ QAT(0.03)S(0.968)PAS(0.001)K QAT(-15.03)S(15.03)PAS(-29.06)K 0 0 1 0 P17480 P17480 P17480 UBTF Nucleolar transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.356628417969 2 435.191858 868.369162 38265.3385778362 2.6897 0.0011705 526580 229.16 526580 229.16 664.354953712181 29.796 0.61547 29.796 29.578 30.194 0 51 20 4 0.989858137739163 0.00180321170419996 0.0376797216697894 0.00040369 1 6634 129.74 59.343 3 51699000 34028 19341 32625 19140 10706 30167 13010 21487 22675 3081.7 32194 18270 32668 19842 12200 29643 13397 21983 21963 3399.1 1 1 1 1 1 1 1 1 1 1 3407 416 3003 3184 3778 3778 675 QCGKTFCVK 9 Unmodified _QCGKTFCVK_ 0 0 0 1 Q8NDW4 Q8NDW4 Q8NDW4 ZNF248 Zinc finger protein 248 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 908.018005371094 2 564.270444 1126.52633 32952.2663470869 1.5595 0.00087995 609180 343.74 609180 343.74 908.01444447497 54.465 0.43139 54.465 54.178 54.609 0 34 14 4 0.880346203806301 0.000920924950660081 0.0118240821940971 0.05382 1 12677 28.743 4.3613 1 56918000 87254 68982 89196 71346 30314 80520 32123 63879 75760 9585.1 82572 65178 88986 73259 34306 80109 33807 65009 72902 10504 1 1 1 1 1 1 1 1 1 1 3408 1510 3004 3185 3779 3779 QDDSPPRPIIGPALPPGFIK 20 Phospho (STY) _QDDS(ph)PPRPIIGPALPPGFIK_ QDDS(1)PPRPIIGPALPPGFIK QDDS(145.63)PPRPIIGPALPPGFIK 0 0 1 1 Q8IXQ4 Q8IXQ4 Q8IXQ4 GPALPP1 GPALPP motifs-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 885.489074707031 3 732.380195 2194.11876 33565.5106128582 2.0829 0.0015255 208600 152.77 208600 152.78 885.489469494092 96.195 1.479 96.195 95.764 97.243 0 155 50 4 0.895000132126747 0.0021737817485379 0.0143673385839931 1.3092E-07 2 22486 145.63 112.32 1 17803000 15450 12421 16172 11404 11763 16037 11079 13511 12575 33134 14622 11728 16187 11846 12190 15898 11352 14649 12345 31512 2 2 2 2 2 2 2 2 2 2 3409 1428 3005 3186 3780;3781 3781 2601 QDENDDDDDWNPCK 14 Unmodified _QDENDDDDDWNPCK_ 0 0 0 0 Q14974 Q14974 Q14974 KPNB1 Importin subunit beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.323791503906 3 589.212922 1764.61694 36521.0918016561 2.0492 0.0012074 259290 152.78 259290 152.78 742.322446372368 53.47 0.79741 53.47 53.147 53.945 7.1054E-15 92 26 5 0.84877137525872 0.00383813174332999 0.0455811640361197 0.00010306 1 12430 120.53 98.992 1 65212000 33277 30563 31775 36123 30132 33252 32714 33613 37584 9380.7 31483 28904 32066 36705 30716 33481 33309 33985 36878 9611 1 1 1 1 1 1 1 1 1 1 3410 1034 3006 3187 3782 3782 QDRCCHK 7 Unmodified _QDRCCHK_ 0 0 0 1 Q86TB3 Q86TB3 Q86TB3 ALPK2 Alpha-protein kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.381713867188 2 502.21346 1002.41237 35841.2254615826 1.3306 0.00066823 456300 229.16 456310 229.16 731.376468399206 48.196 0.73454 48.196 47.917 48.651 0 58 24 4 0.74584724592535 0.00163855806419251 0.0448543946972146 0.049515 1 11235 33.121 0.98032 1 43892000 21063 32617 21869 30232 70418 18491 68096 41359 32763 10235 19934 30799 22564 30998 68528 19364 68459 40909 33826 10595 1 1 1 1 1 1 1 1 1 1 3411 1360 3007 3188 3783 3783 QDSNRSEK 8 Phospho (STY) _QDS(ph)NRSEK_ QDS(0.999)NRS(0.001)EK QDS(30.71)NRS(-30.71)EK 0 0 1 1 Q9Y520 Q9Y520 Q9Y520 PRRC2C Protein PRRC2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 501.251556396484 3 348.476632 1042.40807 44638.931839933 1.3224 0.00046084 438410 152.78 438410 152.78 501.251516303899 23.023 0.60569 23.023 22.805 23.411 0 27 20 2 0.928469664492889 0.0021831927928093 0.024488255121867 0.035366 1 5174 45.915 25.014 2 1979200 2667.8 2802.1 3473.4 3110.3 3089.9 3459 4016.1 3695.2 3820.2 4755.3 2527.5 2648.8 3448.3 3180.4 3171.1 3463.4 4038.2 3840.7 3777.7 4563.2 1 1 1 1 1 1 1 1 1 1 3412 2289 3008 3189 3784 3784 4229 QEAKPQQAAGMLSPK 15 Phospho (STY) _QEAKPQQAAGMLS(ph)PK_ QEAKPQQAAGMLS(1)PK QEAKPQQAAGMLS(120.33)PK 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.432495117188 3 555.267295 1662.78006 36498.9407449825 1.7952 0.00099681 412710 229.16 412710 229.16 784.430852248864 56.341 0.35672 56.341 56.156 56.513 0 30 11 3 0.871529867391903 0.0020730488451082 0.0339211825134224 8.1591E-05 1 13162 120.33 92.563 1 17000000 12459 26674 15851 26160 10954 14141 11800 17703 28018 7428.3 11802 25195 15708 26698 11432 14769 12414 17843 26957 7404.3 1 1 1 1 1 1 1 1 1 1 3413 953 3009 3190 3785 3785 1599 QEDKDDLDVTELTNEDLLDQLVK 23 Unmodified _QEDKDDLDVTELTNEDLLDQLVK_ 0 0 0 1 P42166;P42167 P42166;P42167 P42167 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.95703125 4 672.832905 2687.30252 32711.9537075741 1.8697 0.001258 255450 171.87 255450 171.87 844.956104457437 99.989 0.11016 99.989 99.92 100.03 0 8 3 3 0.838984537801039 0.00084246544622524 0.0194292217294848 0.012869 1 23317 66.871 47.661 1 54831000 6487.5 10014 9159.9 12896 7317.6 8587.5 8860.6 11207 9714.9 72230 6148.8 9476.1 9050.2 12996 7557.3 8968.9 8968.7 13316 9549.5 68272 1 1 1 1 1 1 1 1 1 1 3414 582;581 3010 3191 3786 3786 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 Phospho (STY) _QEKPAEKPAETPVATS(ph)PTATDSTSGDSSR_ QEKPAEKPAETPVAT(0.008)S(0.99)PT(0.002)ATDSTSGDSSR QEKPAEKPAET(-74.74)PVAT(-21.13)S(21.13)PT(-26.54)AT(-46.86)DS(-60.96)T(-67.82)S(-81.12)GDS(-91.25)S(-90.05)R 0 0 1 2 P54727 P54727 P54727 RAD23B UV excision repair protein RAD23 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 929.221008300781 4 757.096301 3024.3561 32347.6752272799 1.9011 0.0014393 227020 171.87 227020 171.87 929.21923827812 42.797 0.43187 42.797 42.598 43.03 7.1054E-15 79 14 7 0.989985033055578 0.00694375443336582 0.0300577780369748 5.6613E-12 1 9779 195.19 179.91 10 146880000 19577 35029 23907 33578 16445 20385 19865 29128 37343 11600 18541 33083 23739 34354 17194 21153 20535 29228 36105 11597 1 1 1 1 1 1 1 1 1 1 3415 713 3011 3192 3787 3787 1194 QEKPSSPSPMPSSTPSPSLNLGNTEEAIR 29 Phospho (STY) _QEKPS(ph)SPSPMPSSTPSPSLNLGNTEEAIR_ QEKPS(0.54)S(0.328)PS(0.132)PMPSSTPSPSLNLGNTEEAIR QEKPS(2.17)S(-2.17)PS(-6.12)PMPS(-50.57)S(-71.32)T(-76)PS(-108.68)PS(-145.94)LNLGNT(-217.39)EEAIR 0 0 1 1 O95810 O95810 O95810 SDPR Serum deprivation-response protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.199890136719 4 780.36542 3117.43257 32761.1887009363 1.9567 0.001527 146830 114.58 146830 114.58 895.448726065662 72.035 0.44334 72.035 71.809 72.252 0 48 14 5 0.945903447853378 0.00389075387662264 0.0209961934625748 9.1308E-18 1 16899 228.03 198.11 9 25993000 3111.9 10685 4631.6 10315 6030.3 4490.7 8993.2 7826.4 13037 12870 2950.4 10091 4599.1 10520 6082.7 4827.3 9122.7 8109 12692 12300 1 1 1 1 1 1 1 1 1 1 3416 263 3012 3193 3788 3788 439 QEKTPKTPK 9 2 Phospho (STY) _QEKT(ph)PKT(ph)PK_ QEKT(1)PKT(1)PK QEKT(60.16)PKT(60.16)PK 0 0 2 2 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 534.052612304688 4 304.889819 1215.53017 43754.5303329706 1.0996 0.00033525 751620 229.16 751630 229.16 534.052851318191 35.055 0.90696 35.055 34.803 35.71 0 87 30 4 0.820093785909452 0.00150536218853606 0.00855751481526414 0.014137 1 7883 60.157 28.56 1 19963000 16937 23796 16049 23766 9263.3 16488 11956 16251 26296 2024.8 16023 22479 16133 24288 9852.7 16853 12433 16371 25338 2282.7 1 1 1 1 1 1 1 1 1 1 3417 315 3013 3194 3789 3789 4376;4377 QELGSPEER 9 Phospho (STY) _QELGS(ph)PEER_ QELGS(1)PEER QELGS(137.62)PEER 0 0 1 0 Q92974 Q92974 Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.317199707031 2 562.734618 1123.45468 37606.2128434161 1.456 0.00081935 203620 114.58 203620 114.58 677.317010520034 35.253 1.6532 35.253 34.887 36.54 0 149 56 4 0.83889854587999 0.00693106996892486 0.127732656048804 2.8161E-05 2 7911 137.62 97.009 1 105640000 85501 73808 80058 77305 98991 77123 105610 91080 91147 7498.7 80885 69743 81171 79158 99418 77502 106790 91045 90548 9168.9 2 2 2 2 2 2 2 2 2 2 3418 1636 3014 3195 3790;3791 3791 3023 QELSCKCRLQK 11 Phospho (STY) _QELS(ph)CKCRLQK_ QELS(1)CKCRLQK QELS(40.02)CKCRLQK 0 0 1 2 REV__Q68CZ1 REV__Q68CZ1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 555.302185058594 4 383.17956 1528.68913 42423.8363494222 1.4893 0.00057067 448540 171.87 448540 171.87 555.302147856404 43.011 0.47691 43.011 42.795 43.272 -7.1054E-15 42 15 4 0.943297641497809 0.00207311939404136 0.0154684340330987 0.044725 1 9838 40.025 9.8912 1 27778000 12153 15075 11706 17920 13158 13488 13055 15331 17178 1775.3 11498 14257 11831 18155 13270 13744 13407 15360 16774 2026.4 1 1 1 1 1 1 1 1 1 1 + 3419 2335 3015 3196 3792 3792 4293 QENCGAQQVPAGPGTSTPPSSPVR 24 2 Phospho (STY) _QENCGAQQVPAGPGTST(ph)PPSS(ph)PVR_ QENCGAQQVPAGPGT(0.015)S(0.071)T(0.927)PPS(0.395)S(0.592)PVR QENCGAQQVPAGPGT(-20.61)S(-11.43)T(11.43)PPS(-1.73)S(1.73)PVR 0 0 2 0 Q96G46 Q96G46 Q96G46 DUS3L tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.085388183594 3 861.362925 2581.06695 32568.7675617866 1.7781 0.0015316 88682 76.388 88684 76.389 938.085044466325 44.124 0.9301 44.124 43.639 44.569 0 131 31 6 0.981566839665702 0.00281059259648767 0.0463525392816656 0.0018554 1 10061 99.325 83.05 10 54844000 7912.3 6918.7 8793 5806.5 4616.3 7782.1 4478 6892.9 5918.2 3953.6 7490.4 6529.5 8752.1 6061.6 4930.7 7708.5 4604.3 7067.7 5778.4 3882.3 1 1 1 1 1 1 1 1 1 1 3420 1681 3016 3197 3793 3793 3095;4727 QENKRPSPR 9 Phospho (STY) _QENKRPS(ph)PR_ QENKRPS(1)PR QENKRPS(70.09)PR 0 0 1 2 Q9Y4B6 Q9Y4B6 Q9Y4B6 VPRBP Protein VPRBP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 550.635314941406 3 397.859188 1190.55573 42593.7989425901 1.8908 0.00075226 383990 152.78 384000 152.78 550.634727930822 23.371 0.37611 23.371 23.151 23.527 0 45 12 5 0.96226564010084 0.0281286071436445 0.46965640409785 0.015621 1 5243 70.089 40.734 1 23264000 9667.4 9499.9 8955.6 9822.2 9072.4 9409.9 7363.8 9181.7 11604 1762 9145.1 8976.1 9056.9 10059 9179.6 9450.9 7693.9 9271.9 11270 1871.6 1 1 1 1 1 1 1 1 1 1 3421 2277 3017 3198 3794 3794 4212 QEPESEEEEEEKQEK 15 Phospho (STY) _QEPES(ph)EEEEEEKQEK_ QEPES(1)EEEEEEKQEK QEPES(193.64)EEEEEEKQEK 0 0 1 1 P49756 P49756 P49756 RBM25 RNA-binding protein 25 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.088256835938 3 652.924645 1955.75211 33545.5861312945 1.7934 0.001171 350980 229.16 350980 229.16 882.420432605682 40.3 0.76685 40.3 39.918 40.685 7.1054E-15 63 25 3 0.9365492256056 0.000463614879504109 0.00540765072122242 1.0162E-10 1 9135 193.64 142.15 1 22107000 16640 21667 16407 21708 21414 19243 20570 19441 24130 4345 15745 20468 16594 22247 21427 19409 21077 19624 23658 4541.2 1 1 1 1 1 1 1 1 1 1 3422 650 3018 3199 3795 3795 1078 QEPGGSHGSETEDTGR 16 Phospho (STY) _QEPGGSHGS(ph)ETEDTGR_ QEPGGSHGS(0.998)ET(0.001)EDTGR QEPGGS(-34.39)HGS(28.52)ET(-28.52)EDT(-57.05)GR 0 0 1 0 Q9UKJ3 Q9UKJ3 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.946411132813 3 575.22336 1722.64825 39611.3975153418 1.8938 0.0010894 132800 76.388 132800 76.389 651.610992358821 23.283 0.49068 23.283 23.122 23.613 0 37 16 4 0.908920704043171 0.00447831872278821 0.0417304861107657 0.00010003 1 5223 110.4 95.012 4 3251700 1110.5 2031 1615 2021.9 1616.8 1290.5 1150 1701.6 1891.2 1449 1052.8 1918.6 1596.3 2064.8 1634.8 1334 1213.3 1734.6 1834.6 1403.8 1 1 1 1 1 1 1 1 1 1 3423 2173 3019 3200 3796 3796 3919 QEPSPKPNNK 10 Phospho (STY) _QEPS(ph)PKPNNK_ QEPS(1)PKPNNK QEPS(99.01)PKPNNK 0 0 1 1 Q8N684 Q8N684 Q8N684 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.017456054688 3 406.855332 1217.54417 39951.4660255186 1.9769 0.00080433 563250 229.16 563250 229.16 636.352159566879 33.386 0.64494 33.386 33.112 33.757 0 53 22 3 0.878006306365107 0.00182454307288913 0.00398236169496128 0.00097153 1 7453 99.011 76.405 1 38792000 15912 29585 16422 27736 13713 16474 13384 20379 30062 5083.3 15059 27937 16473 28410 14087 17074 14097 20444 28955 5258.2 1 1 1 1 1 1 1 1 1 1 3424 1478 3020 3201 3797 3797 2727 QEQINTEPLEDTVLSPTK 18 Phospho (STY) _QEQINTEPLEDTVLS(ph)PTK_ QEQINTEPLEDTVLS(0.97)PT(0.03)K QEQINT(-117.19)EPLEDT(-46.81)VLS(15.05)PT(-15.05)K 0 0 1 0 O15446 O15446 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.777526855469 3 708.00323 2120.98786 34294.6012230223 1.7426 0.0012338 215780 152.78 215790 152.78 861.112742889771 80.266 0.53266 80.266 80.018 80.551 1.4211E-14 47 17 4 0.625369258197034 0.00142400141744995 0.0135408576314051 1.7947E-07 1 18774 149.74 127.62 4 20005000 6206.4 6225.3 5750.1 6970.6 7038 5708.1 6387.5 6303.1 7589.5 16001 5871.1 5885.1 5830.8 7091.5 7058.1 5815.5 6566.1 6781.6 7437.6 15213 1 1 1 1 1 1 1 1 1 1 3425 94 3021 3202 3798 3798 161 QERLSPEVAPPAHR 14 Phospho (STY) _QERLS(ph)PEVAPPAHR_ QERLS(1)PEVAPPAHR QERLS(70.56)PEVAPPAHR 0 0 1 1 Q8TAD8 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 632.99658203125 3 556.273549 1665.79882 38943.0227722623 1.9036 0.0010589 137320 76.388 137320 76.389 632.66114245052 38.7 0.49581 38.7 38.495 38.991 0 43 16 3 0.642469089143397 0.00396890528196246 0.0390167445133572 0.011032 1 8754 70.555 49.685 1 74873000 22541 17734 26888 18862 29518 25563 29843 28298 24782 4952.4 21346 16760 26857 19406 29799 25367 30223 28428 24667 5318.2 1 1 1 1 1 1 1 1 1 1 3426 1531 3022 3203 3799 3799 2812 QESCLGNSPPFEK 13 Phospho (STY) _QESCLGNS(ph)PPFEK_ QES(0.008)CLGNS(0.992)PPFEK QES(-21.06)CLGNS(21.06)PPFEK 0 0 1 0 Q86W56 Q86W56 Q86W56 PARG Poly(ADP-ribose) glycohydrolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.994140625 3 524.884851 1571.63272 37534.3831270063 1.8738 0.00098352 291060 152.77 291060 152.78 677.658671685316 64.929 0.63201 64.929 64.564 65.196 0 49 21 3 0.968088229986654 0.00113073969188123 0.0142725910424404 0.0081621 1 15222 78.021 56.464 2 9793800 7605.5 9548.8 8482 10042 7700.4 7246.2 7479 8255.1 8888.6 6578.2 7200 9023.2 8480.5 10236 7858.8 7413.1 7662.3 8439.6 8710.6 6385.2 1 1 1 1 1 1 1 1 1 1 3427 1385 3023 3204 3800 3800 2512 QESDKNGESASPERDR 16 Phospho (STY) _QESDKNGESAS(ph)PERDR_ QESDKNGES(0.189)AS(0.811)PERDR QES(-51.83)DKNGES(-6.32)AS(6.32)PERDR 0 0 1 2 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.040832519531 3 628.928835 1883.76468 35924.7706917539 1.7085 0.0010745 242910 152.78 242920 152.78 781.704121986722 24.503 0.2879 24.503 24.368 24.656 0 25 9 3 0.989327511039847 0.00258921843626529 0.00714415921905096 0.0038048 1 5481 95.195 79.253 3 8274200 6863.3 5073.2 6311.2 4843.9 3763 5770.7 4990.3 5421.3 4995.8 1287.3 6492.3 4791.1 6357.9 5002.5 3986.6 5740.9 5020.9 5490.3 4929.1 1337.6 1 1 1 1 1 1 1 1 1 1 3428 1016 3024 3205 3801 3801 1731 QEVGPPLPPLLAPLIATPPR 20 Phospho (STY) _QEVGPPLPPLLAPLIAT(ph)PPR_ QEVGPPLPPLLAPLIAT(1)PPR QEVGPPLPPLLAPLIAT(122.38)PPR 0 0 1 0 Q9Y2F5 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.123718261719 3 719.400819 2155.18063 36709.8356182615 1.5039 0.0010819 106180 76.387 106180 76.388 796.121411158749 102.67 0.20308 102.67 102.54 102.75 1.4211E-14 17 6 4 0.969743511737603 0.00304239336117405 0.0404955460403327 4.7903E-05 1 24204 122.38 109.32 1 11141000 3698.8 3503.1 3743.2 4041.6 3795.7 3775.8 3385.5 4686.6 3811.4 26068 3500.1 3312.3 3766.5 4112.7 3843.4 3857 3477.5 5451.2 3742.6 24655 1 1 1 1 1 1 1 1 1 1 3429 2243 3025 3206 3802 3802 4842 QFCQEGQPHVLEALSPPQTSGLSPSR 26 Phospho (STY) _QFCQEGQPHVLEALSPPQTSGLS(ph)PSR_ QFCQEGQPHVLEALSPPQT(0.022)S(0.041)GLS(0.794)PS(0.142)R QFCQEGQPHVLEALS(-47.27)PPQT(-15.52)S(-12.84)GLS(7.47)PS(-7.47)R 0 0 1 0 Q9H063 Q9H063 Q9H063 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.18334960938 3 977.454933 2929.34297 30806.6120446206 1.6806 0.0016427 78150 76.388 78152 76.39 1054.51278698913 77.866 1.0927 77.866 77.254 78.347 0 176 37 6 0.968191867147966 0.00325436777442909 0.0782015299816109 4.7051E-13 1 18168 211.43 194.08 5 44039000 3368.5 2674.2 3646.8 3345.4 2772 3339 2844.8 4645.4 3042.1 19451 3188.5 2530 3645.5 3393.9 2865.9 3400.1 2897.7 5195.1 2993.3 18423 1 1 1 1 1 1 1 1 1 1 3430 1897 3026 3207 3803 3803 3453 QFLQAAEAIDDIPFGITSNSDVFSK 25 Unmodified _QFLQAAEAIDDIPFGITSNSDVFSK_ 0 0 0 0 P07237 P07237 P07237 P4HB Protein disulfide-isomerase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1058.22692871094 3 905.116702 2712.32828 30687.1803995415 1.1926 0.0010794 168790 152.78 168790 152.78 1058.22559418531 101.69 0.14604 101.69 101.61 101.76 0 8 4 3 0.355841389198078 0.000437504370341665 0.0254028656875377 0.025294 1 23933 59.046 43.104 1 53303000 23112 24023 18831 20131 22754 21259 23397 21941 18345 76767 21854 22672 19258 20925 22863 21412 23647 24296 18316 72793 1 1 1 1 1 1 1 1 1 1 3431 316 3027 3208 3804 3804 QFTPCQLLADHANSPNKK 18 Phospho (STY) _QFTPCQLLADHANS(ph)PNKK_ QFTPCQLLADHANS(1)PNKK QFT(-109.48)PCQLLADHANS(109.48)PNKK 0 0 1 1 P40939 P40939 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.127685546875 4 538.002861 2147.98234 37796.9883582671 2.2094 0.0011887 319460 171.87 319470 171.87 710.125475772524 72.179 0.56096 72.179 71.924 72.485 -1.4211E-14 59 18 5 0.982764877546616 0.00211535995017083 0.0134559338678518 7.4274E-11 1 16941 182.41 163.91 2 15711000 5861.2 9249.9 6903.9 8658.7 10193 6427.3 10619 9857.7 9698.6 5554 5550.1 8734.7 6932.9 8890.7 10155 6595.4 10763 9922.4 9608.6 5457.9 1 1 1 1 1 1 1 1 1 1 3432 575 3028 3209 3805 3805 925 QGAIYHGLATLLNQPSPMMQR 21 Oxidation (M),Phospho (STY) _QGAIYHGLATLLNQPS(ph)PMM(ox)QR_ QGAIYHGLATLLNQPSPM(0.466)M(0.534)QR QGAIYHGLATLLNQPS(1)PMMQR QGAIYHGLATLLNQPSPM(-0.59)M(0.59)QR QGAIY(-72.71)HGLAT(-39.4)LLNQPS(39.4)PMMQR 0 1 1 0 P55196 P55196 P55196 MLLT4 Afadin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 884.776062011719 3 808.051755 2421.13344 32723.905149142 1.8347 0.0014826 94536 76.39 94538 76.391 884.775158340684 94.623 0.60378 94.623 94.224 94.827 0 45 20 3 0 0 0 0.0084287 1 21936 80.156 65.228 6 6364800 2507.2 3158.2 3409.7 3287.7 2392.1 2899.1 2919.6 3712.8 4514.4 21803 2375.8 2984.2 3370 3361.5 2496.6 2974.5 2990.3 4349.6 4386.7 20616 1 1 1 1 1 1 1 1 1 1 3433 720 3029 3210 3806 3806 93 1198 QGAIYHGLATLLNQPSPMMQR 21 Phospho (STY) _QGAIYHGLATLLNQPS(ph)PMMQR_ QGAIYHGLATLLNQPS(1)PMMQR QGAIY(-116.89)HGLAT(-50.59)LLNQPS(50.59)PMMQR 0 0 1 0 P55196 P55196 P55196 MLLT4 Afadin MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.113464355469 3 802.720117 2405.13852 NaN NaN NaN NaN NaN NaN NaN NaN 98.55 1 98.55 98.05 99.05 0 NaN NaN NaN 7.3138E-05 1 22870 124.17 104.12 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3434 720 3029 3211 3807 3807 1198 QGEVPESPEAR 11 Phospho (STY) _QGEVPES(ph)PEAR_ QGEVPES(1)PEAR QGEVPES(71.51)PEAR 0 0 1 0 Q9H930 Q9H930 Q9H930 SP140L Nuclear body protein SP140-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.351623535156 2 639.771732 1277.52891 37150.0644508662 1.1853 0.0007583 179100 114.58 179100 114.58 754.351241898031 34.029 0.34585 34.029 33.845 34.191 0 17 11 2 0.430586918266798 0.000153116388296945 0.0040915892388586 0.015992 1 7637 71.513 45.954 1 6447600 20539 12059 17393 13155 15175 19216 15278 16680 12222 4975.8 19424 11398 17667 13538 15530 18968 15463 16979 12189 5071.3 1 1 1 1 1 1 1 1 1 1 3435 1966 3030 3212 3808 3808 3578 QGGSPDEPDSK 11 Phospho (STY) _QGGS(ph)PDEPDSK_ QGGS(1)PDEPDSK QGGS(72.46)PDEPDS(-72.46)K 0 0 1 0 Q9ULX6 Q9ULX6 Q9ULX6 AKAP8L A-kinase anchor protein 8-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 827.891296386719 2 598.72699 1195.43943 34379.3918469782 2.2108 0.0013236 382750 229.16 382750 229.16 827.890098314952 32.061 0.41472 32.061 31.852 32.267 0 30 13 3 0.976054536992477 0.00138549131088551 0.0851442442414135 4.5697E-10 1 7167 187.16 143.74 2 10517000 13293 19802 12170 18812 14788 13082 15129 16444 19527 2351.5 12574 18700 12352 19284 14861 13415 15504 16435 19081 2594.8 1 1 1 1 1 1 1 1 1 1 3436 2195 3031 3213 3809 3809 3977 QGGSQPSSFSPGQSQVTPQDQEK 23 Phospho (STY) _QGGSQPSSFS(ph)PGQSQVTPQDQEK_ QGGSQPS(0.002)S(0.012)FS(0.985)PGQSQVTPQDQEK QGGS(-33.94)QPS(-26.58)S(-19.05)FS(19.05)PGQS(-68.48)QVT(-123.78)PQDQEK 0 0 1 0 Q9H0L4 Q9H0L4 Q9H0L4 CSTF2T Cleavage stimulation factor subunit 2 tau variant MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 981.802429199219 3 828.694007 2483.06019 31962.2812582802 1.2035 0.00099736 184360 152.77 184360 152.78 981.803367066004 50.252 0.57883 50.252 49.925 50.504 -7.1054E-15 68 19 5 0.959800040248908 0.00137534664102484 0.0122920038931798 2.1001E-12 1 11646 191.15 167.35 6 39297000 10975 8304.1 12663 10216 8951 11893 9955.3 10838 9818.9 17613 10392 7855.5 12611 10400 9316.8 11866 10082 11443 9694.1 16836 1 1 1 1 1 1 1 1 1 1 3437 1907 3032 3214 3810 3810 3462 QGLGPASTTSPSPGPRSPK 19 Phospho (STY) _QGLGPASTTSPSPGPRS(ph)PK_ QGLGPASTTSPS(0.003)PGPRS(0.997)PK QGLGPAS(-50.8)T(-39.6)T(-35.05)S(-37.33)PS(-25.88)PGPRS(25.88)PK 0 0 1 1 P98171 P98171 P98171 ARHGAP4 Rho GTPase-activating protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.42041015625 3 634.642078 1900.90441 35355.4688302684 2.1383 0.0013571 240730 152.78 240730 152.78 787.751674715441 44.846 0.6706 44.846 44.48 45.151 0 78 22 5 0.941415574676403 0.00451524037489358 0.0513617115095358 8.2372E-08 1 10279 161.04 137.87 6 80490000 38683 15933 37652 18922 30833 37087 33157 28507 17168 9876.4 36601 15068 37893 19538 31709 36275 33201 29225 17618 9959.5 1 1 1 1 1 1 1 1 1 1 3438 818 3033 3215 3811 3811 1313 QGMDLSANQDEETDQETFQLEIDR 24 Unmodified _QGMDLSANQDEETDQETFQLEIDR_ 0 0 0 0 Q16658 Q16658 Q16658 FSCN1 Fascin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1015.13641357422 3 938.078647 2811.21411 30201.6391526102 1.2375 0.0011609 81431 76.389 81432 76.39 1014.80170417269 80.534 0.58769 80.534 80.252 80.84 0 59 19 4 0.940821302859193 0.00246285804465012 0.0197898831315833 1.6402E-12 1 18830 203.4 188.48 1 20859000 2533.4 2569 1968 2813.1 2443.1 2217 2615.8 3368.6 2713.8 15075 2395.1 2428.3 2020.3 2863.9 2453.8 2291.6 2657 3788.6 2673.5 14273 1 1 1 1 1 1 1 1 1 1 3439 1112 3034 3216 3812 3812 QGPVSQSATQQPVTADKQQGHEPVSPR 27 Phospho (STY) _QGPVSQSATQQPVTADKQQGHEPVS(ph)PR_ QGPVSQSATQQPVTADKQQGHEPVS(1)PR QGPVS(-191.95)QS(-166.89)AT(-126.36)QQPVT(-47.89)ADKQQGHEPVS(47.89)PR 0 0 1 1 Q9BTA9 Q9BTA9 Q9BTA9 WAC WW domain-containing adapter protein with coiled-coil MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.935791015625 4 735.101721 2936.37778 33585.4771108007 1.7887 0.0013148 155870 114.58 155870 114.58 849.934825196541 41.217 0.51841 41.217 41.022 41.54 0 49 17 4 0.941000593256273 0.000683536430141321 0.00682605054092084 9.1077E-25 1 9440 259.76 231.87 5 10521000 5939.8 6297.6 6244.8 4773.5 7178.6 6338.6 7092.8 7217.8 6112.6 5456.1 5621.7 5940.4 6281.9 5019.5 7227.5 6305 7197.2 7370.3 6072.8 5304.7 1 1 1 1 1 1 1 1 1 1 3440 1821 3035 3217 3813 3813 3335 QGSFSEDVISHK 12 Phospho (STY) _QGS(ph)FSEDVISHK_ QGS(0.802)FS(0.198)EDVISHK QGS(6.07)FS(-6.07)EDVIS(-44.78)HK 0 0 1 0 Q9UPN3 Q9UPN3 Q9UPN3 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.982421875 3 471.873051 1412.59732 38873.3039010853 1.6454 0.00077642 323760 152.77 323760 152.78 624.647098508995 62.066 0.40019 62.066 61.892 62.292 -7.1054E-15 29 13 3 0.809748322786295 0.00166265490697115 0.0310429193224025 0.0095651 1 14566 72.642 59.662 3 11319000 9293.2 10213 9154.2 10891 13877 9842.1 15063 12306 10373 9699.2 8793.2 9651.5 9285.8 11125 13816 9961.2 15148 12541 10434 9417.7 1 1 1 1 1 1 1 1 1 1 3441 2211 3036 3218 3814 3814 4002 QGSGRESPSLASR 13 Phospho (STY) _QGSGRES(ph)PSLASR_ QGSGRES(1)PSLASR QGS(-47.77)GRES(41.23)PS(-41.23)LAS(-101.32)R 0 0 1 1 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.605163574219 3 471.2157 1410.62527 41130.2765273986 1 0.00047124 162110 76.388 162110 76.389 547.603902087818 27.298 0.57936 27.298 27.06 27.639 0 53 19 3 0.844630251867917 0.0050090396071697 0.0289090333168354 4.1519E-08 1 6062 173.63 146.74 4 57246000 9135.9 9829 8956.9 9445.5 15270 10102 13531 10283 10693 2688 8644.3 9283 9103.4 9732.3 15096 10104 13779 10389 10671 2769 1 1 1 1 1 1 1 1 1 1 3442 1576 3037 3219 3815 3815 2896;2897 QGSGRESPSLASR 13 Phospho (STY) _QGS(ph)GRESPSLASR_ QGS(1)GRESPSLASR QGS(49.01)GRES(-49.01)PS(-65.34)LAS(-78.47)R 0 0 1 1 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.602294921875 3 471.2157 1410.62527 41770.3378253686 1.5182 0.0007154 162110 76.387 162110 76.388 547.602779887935 28.667 0.43144 28.667 28.465 28.896 -3.5527E-15 39 14 3 0.939052055263742 0.00358584317660534 0.0304419835519695 0.0055353 1 6370 85.51 66.224 4 21411000 9810.2 8126 10320 6854.8 8272 9708.1 8183.5 9588.3 7634.6 1813.4 9284.9 7669.1 10337 7161.7 8513.6 9605.4 8319.4 9677.1 7556.4 1929.5 1 1 1 1 1 1 1 1 1 1 3443 1576 3037 3219 3816 3816 2896;2897 QGSITSPQANEQSVTPQR 18 Phospho (STY) _QGSITS(ph)PQANEQSVTPQR_ QGS(0.02)IT(0.127)S(0.853)PQANEQSVTPQR QGS(-16.3)IT(-8.26)S(8.26)PQANEQS(-91.24)VT(-100.62)PQR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 746.699340820313 3 669.975897 2006.90586 36246.7804950171 1.7244 0.0011553 114020 76.387 114020 76.389 746.697526034531 42.675 0.60246 42.675 42.281 42.883 7.1054E-15 34 20 2 0.488179404183992 0.00104059544516255 0.010522663779061 3.7738E-05 1 9717 118.51 94.876 5 13324000 8898.2 7265.8 8527.9 9069.8 7470.5 8100.8 7882.4 9063.2 8053.5 5784.1 8418.6 6874 8596.2 9186.9 7649.5 8186.1 8008.5 9228.1 7939.1 5656.2 1 1 1 1 1 1 1 1 1 1 3444 2226 3038 3220 3817 3817 4061;4062;4827;4828 QGSITSPQANEQSVTPQRR 19 Phospho (STY) _QGSITSPQANEQSVT(ph)PQRR_ QGSITSPQANEQSVT(1)PQRR QGS(-200.94)IT(-176.54)S(-168.82)PQANEQS(-43.65)VT(43.65)PQRR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.731811523438 3 722.009601 2163.00697 35178.2088671872 1.6576 0.0011968 105800 76.388 105800 76.389 798.731559128655 35.284 0.70657 35.284 34.915 35.622 0 93 23 5 0.983694537308162 0.00323106408657598 0.0136905858057721 4.0843E-16 1 7884 243.39 218.75 5 150680000 16609 15285 16360 13794 12327 17707 12087 16457 17741 2291.5 15715 14431 16438 14317 12749 17563 12470 16626 17265 2538.6 1 1 1 1 1 1 1 1 1 1 3445 2226 3039 3221 3818 3818 4061;4062;4827;4828 QGSITSPQANEQSVTPQRR 19 2 Phospho (STY) _QGSITS(ph)PQANEQSVT(ph)PQRR_ QGS(0.004)IT(0.118)S(0.877)PQANEQS(0.029)VT(0.971)PQRR QGS(-23.14)IT(-8.71)S(8.71)PQANEQS(-15.3)VT(15.3)PQRR 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.388244628906 3 748.665044 2242.9733 34498.4921119335 1.26 0.00094335 102030 76.388 102030 76.389 825.386996780856 37.062 1.1704 37.062 36.206 37.376 0 142 42 6 0.987755401622389 0.0022922494185938 0.00359724302988425 1.3017E-07 1 8413 156.58 134.15 10 167740000 22612 22514 23866 21122 14330 23641 12610 20920 21334 3754.8 21402 21260 23839 21813 15089 23557 13158 21203 20681 4019.7 1 1 1 1 1 1 1 1 1 1 3446 2226 3039 3222 3819 3819 4061;4062;4827;4828 QGSITSPQANEQSVTPQRR 19 2 Phospho (STY) _QGSITS(ph)PQANEQSVT(ph)PQRR_ QGS(0.162)IT(0.314)S(0.525)PQANEQS(0.109)VT(0.891)PQRR QGS(-5.13)IT(-2.25)S(2.25)PQANEQS(-9.2)VT(9.2)PQRR 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.052124023438 3 748.665044 2242.9733 NaN NaN NaN NaN NaN NaN NaN NaN 36.466 1 36.466 35.966 36.966 0 NaN NaN NaN 0.0055472 1 8218 95.523 80.829 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3447 2226 3039 3222 3820 3820 4061;4062;4827;4828 QGSLAMEELK 10 Oxidation (M),Phospho (STY) _QGS(ph)LAM(ox)EELK_ QGSLAM(1)EELK QGS(1)LAMEELK QGSLAM(93.24)EELK QGS(93.24)LAMEELK 0 1 1 0 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 553.952758789063 3 401.177195 1200.50975 41750.9992730389 1.4975 0.00060076 380820 152.78 380820 152.78 553.952426490842 57.141 0.86278 57.141 56.841 57.704 0 49 29 2 0.983449768971678 0.00340275436871762 0.0198155114705659 0.0028637 1 13327 93.237 55.812 1 73085000 9569.2 9937.7 8805.4 12333 26274 10926 29192 13275 11277 4388.6 9052.1 9401.5 9129.8 12494 25656 11052 29084 13357 11886 4439.6 1 1 1 1 1 1 1 1 1 1 3448 403 3040 3223 3821 3821 53 639 QGSLAMEELK 10 Phospho (STY) _QGS(ph)LAMEELK_ QGS(1)LAMEELK QGS(127.71)LAMEELK 0 0 1 0 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.621459960938 3 395.845557 1184.51484 42232.5683890974 1.98 0.00078378 385950 152.77 385950 152.78 548.620723345365 71.956 1.0277 71.956 71.636 72.663 -1.4211E-14 141 34 6 0.994244162423138 0.0111652811681035 0.17116860782437 8.078E-05 1 16854 127.71 38.309 1 246710000 12120 14308 14443 15762 54888 12119 55392 28265 14466 1717.8 11477 13525 14906 16036 53281 12516 55239 27778 16010 2271.6 1 1 1 1 1 1 1 1 1 1 3449 403 3040 3224 3822 3822 639 QGSPDQVSPVSEMTSTSLYQDK 22 Phospho (STY) _QGS(ph)PDQVSPVSEMTSTSLYQDK_ QGS(1)PDQVSPVSEMTSTSLYQDK QGS(37.22)PDQVS(-37.22)PVS(-69.3)EMT(-103)S(-116.91)T(-116.46)S(-117.45)LY(-129.86)QDK 0 0 1 0 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 975.136291503906 3 822.024365 2463.05127 31822.4883053645 1.5024 0.001235 185850 152.78 185850 152.78 975.135547005422 83.206 0.41275 83.206 83.028 83.441 0 41 13 4 0.954441982093311 0.00259362372023648 0.0269832891618119 3.8305E-06 2 19471 136.66 116.59 8 10590000 4455.1 16140 5159.9 16136 6296.8 5685.9 5675.1 9230 17877 39993 4218.3 15247 5168 16400 6325.6 6285.4 6140.7 10326 17121 37871 2 2 2 2 2 2 2 2 2 2 3450 616 3041 3225 3823;3824 3824 1015 QGSPGSVSK 9 Phospho (STY) _QGS(ph)PGSVSK_ QGS(0.999)PGS(0.001)VSK QGS(29.97)PGS(-29.97)VS(-60.03)K 0 0 1 0 O00425 O00425 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.86572265625 2 463.70259 925.390626 37348.2661134516 1.1977 0.00055536 494200 229.16 494200 229.16 692.865391475515 34.385 0.69959 34.385 33.962 34.662 0 53 17 4 0.992888819134584 0.00415923910128397 0.0395043858929724 6.4506E-06 1 7680 149.02 64.935 3 381200000 40249 96595 39622 95750 48908 36743 49403 62680 107260 3671.4 38083 91245 40048 97417 49146 39795 51849 61978 103380 4907.7 1 1 1 1 1 1 1 1 1 1 3451 46 3042 3226 3825 3825 71 QGSPVAAGAPAK 12 Phospho (STY) _QGS(ph)PVAAGAPAK_ QGS(1)PVAAGAPAK QGS(85.56)PVAAGAPAK 0 0 1 0 Q9NZI8 Q9NZI8 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.28955078125 3 378.516539 1132.52779 42882.6931849458 0.90321 0.00034188 403620 152.78 403620 152.78 531.292358580184 40.225 0.79587 40.225 39.918 40.714 0 97 25 6 0.981279527365386 0.0047669550894765 0.0225559181310218 0.0053286 1 9102 85.563 40.925 1 1692800000 15507 41145 16532 40276 45301 18141 47433 34654 43046 2636.2 14677 38864 16944 41052 44299 19383 48060 34200 42660 3284.3 1 1 1 1 1 1 1 1 1 1 3452 2081 3043 3227 3826 3826 3772 QHLGATGGPGAQLGASFLQAR 21 Phospho (STY) _QHLGATGGPGAQLGAS(ph)FLQAR_ QHLGATGGPGAQLGAS(1)FLQAR QHLGAT(-93.05)GGPGAQLGAS(93.05)FLQAR 0 0 1 0 Q9NWW5 Q9NWW5 Q9NWW5 CLN6 Ceroid-lipofuscinosis neuronal protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.070983886719 3 706.347777 2116.0215 35717.4666762191 1.3557 0.00095759 108150 76.389 108150 76.39 783.069798226039 73.413 0.4612 73.413 73.213 73.674 0 29 15 3 0.885849924089424 0.00136493472637233 0.0135887467765574 4.1943E-06 1 17241 136.49 106.4 2 8238200 6475.2 8173.6 6833.8 8372 8571.6 7684 7569.3 8767.3 9303 23242 6128.6 7722.5 6880 8572.9 8583.3 7790.1 7800.5 9452.6 9105.7 22088 1 1 1 1 1 1 1 1 1 1 3453 2057 3044 3228 3827 3827 3724 QICLVMLETLSQSPQGR 17 Oxidation (M),Phospho (STY) _QICLVM(ox)LETLSQS(ph)PQGR_ QICLVM(1)LETLSQSPQGR QICLVMLETLSQS(1)PQGR QICLVM(221.77)LETLSQSPQGR QICLVMLET(-76.22)LS(-43.37)QS(43.37)PQGR 0 1 1 0 Q15365 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.380187988281 3 685.991614 2054.95301 35310.9156164085 1.5244 0.0010457 111350 76.387 111350 76.388 762.713176579157 91.008 0.80434 91.008 90.705 91.509 0 76 27 4 0.79904056681675 0.0040490476549456 0.0935630330432057 7.142E-16 1 21179 221.77 193.91 3 40473000 3340.3 5472.5 3989.4 4935.4 5312 4076.1 4518 5795.8 5422.7 16563 3163.2 5166.7 3994.5 5086.5 5302.2 4176.8 4661.8 6246.1 5312.2 15730 1 1 1 1 1 1 1 1 1 1 3454 1070 3045 3229 3828 3828 139 1847 QICLVMLETLSQSPQGR 17 Phospho (STY) _QICLVMLETLSQS(ph)PQGR_ QICLVMLETLSQS(1)PQGR QICLVMLET(-88.25)LS(-54.1)QS(54.1)PQGR 0 0 1 0 Q15365 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1135.07141113281 2 1020.48633 2038.9581 28677.4939365533 0.95866 0.0009783 112280 114.58 112280 114.58 1135.06961020038 100.77 0.31064 100.77 100.67 100.98 0 26 10 5 0.948303077423097 0.00310558587526677 0.0810166467033649 8.4402E-97 1 23606 479.89 443.3 3 105240000 0 39978 19835 38999 20389 17989 24800 29590 41873 71644 0 37760 18847 39765 20736 19250 25499 31390 40592 68146 0 1 1 1 1 1 1 1 1 1 3455 1070 3045 3230 3829 3829 1847 QICVVMLETLSQSPPK 16 Oxidation (M),Phospho (STY) _QICVVM(ox)LETLSQS(ph)PPK_ QICVVM(1)LETLSQSPPK QICVVMLETLSQS(1)PPK QICVVM(177)LETLSQSPPK QICVVMLET(-84.51)LS(-50.74)QS(50.74)PPK 0 1 1 0 Q15366 Q15366 Q15366 PCBP2 Poly(rC)-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.752990722656 3 642.641922 1924.90394 34616.7100732077 1.7995 0.0011564 237730 152.78 237730 152.78 795.751932852881 88.399 0.59659 88.399 88.027 88.623 0 84 20 5 0.976995423923564 0.00275434637370895 0.0323557954417721 1.5957E-10 1 20575 177 163.96 3 35839000 4927.4 5260.2 4751.4 5928.9 5235.7 5476.2 4494.8 6483.4 5206.7 29548 4661.9 4972.9 4799.1 6039.5 5274.8 5577.5 4630.4 7354.6 5107.3 27973 1 1 1 1 1 1 1 1 1 1 3456 1071 3046 3231 3830 3830 143 1853 QICVVMLETLSQSPPK 16 Oxidation (M),Phospho (STY) _QICVVM(ox)LETLSQS(ph)PPK_ QICVVM(1)LETLSQSPPK QICVVMLETLSQS(1)PPK QICVVM(171.47)LETLSQSPPK QICVVMLET(-77.7)LS(-40.38)QS(40.38)PPK 0 1 1 0 Q15366 Q15366 Q15366 PCBP2 Poly(rC)-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.752014160156 3 642.641922 1924.90394 35134.0953286856 2.1236 0.0013647 237730 152.78 237730 152.78 795.75122353424 88.903 0.6675 88.903 88.596 89.263 0 87 22 5 0.982952467470751 0.00823212661782135 0.0552949923926464 7.756E-08 1 20753 171.47 159.11 3 34118000 5851.6 7206 5459.9 8441 4783.5 6093.4 6017.1 6950.5 7238.4 40342 5535.6 6814.3 5514.3 8553.9 4912.8 6299.3 6099 8154.2 7090.3 38147 1 1 1 1 1 1 1 1 1 1 3457 1071 3046 3231 3831 3831 143 1853 QICVVMLETLSQSPPK 16 Phospho (STY) _QICVVMLETLSQS(ph)PPK_ QICVVMLETLSQS(1)PPK QICVVMLET(-111.18)LS(-58.5)QS(58.5)PPK 0 0 1 0 Q15366 Q15366 Q15366 PCBP2 Poly(rC)-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.420471191406 3 637.310284 1908.90902 34420.2907908846 1.9253 0.001227 239720 152.78 239720 152.78 790.420181218634 100.58 0.39 100.58 100.42 100.81 0 65 13 7 0.994383532731977 0.0296032637590727 0.576025725991699 1.012E-22 1 23510 258.67 237.72 3 809150000 16689 23562 19813 25507 17301 18521 16344 23095 28123 202930 15804 22269 19738 25958 17703 19316 17005 29103 27249 191620 1 1 1 1 1 1 1 1 1 1 3458 1071 3046 3232 3832 3832 1853 QIDSSPVGGETDETTVSQNYR 21 Phospho (STY) _QIDSS(ph)PVGGETDETTVSQNYR_ QIDS(0.142)S(0.858)PVGGETDETTVSQNYR QIDS(-7.82)S(7.82)PVGGET(-97.16)DET(-141.48)T(-141.48)VS(-154.34)QNY(-203.58)R 0 0 1 0 O15027 O15027 O15027 SEC16A Protein transport protein Sec16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 864.729553222656 3 788.339341 2361.99619 33753.0115473621 2.1111 0.0016643 96896 76.387 96899 76.389 865.060933388554 53.716 0.49959 53.716 53.475 53.974 7.1054E-15 44 16 4 0.990919927825668 0.00181979942346212 0.0242389450789437 2.3253E-16 1 12510 216.85 199.48 7 27877000 8817.4 8817.6 9036.5 7810.2 8230.4 8529.2 7395 8887.6 8445.8 17370 8344.4 8324 9075.2 8092.3 8389 8554.4 7596.3 9424.4 8288.9 16561 1 1 1 1 1 1 1 1 1 1 3459 75 3047 3233 3833 3833 132 QILIACSPVSSVR 13 Phospho (STY) _QILIACS(ph)PVSSVR_ QILIACS(0.997)PVS(0.003)SVR QILIACS(25.92)PVS(-25.92)S(-51.71)VR 0 0 1 0 Q5QJE6 Q5QJE6 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.961730957031 2 755.378384 1508.74221 33769.7547754086 2.0441 0.0015441 151690 114.58 151690 114.58 869.959861090675 73.84 0.5136 73.84 73.556 74.07 0 58 17 4 0.926911564973978 0.00267219242169486 0.10115620182887 5.7497E-11 1 17309 204.48 160.76 3 76501000 20647 28450 23296 27731 19259 23843 20012 24793 27457 20927 19547 26872 23258 28455 19800 24124 20538 25463 26776 20279 1 1 1 1 1 1 1 1 1 1 3460 1175 3048 3234 3834 3834 2035 QISDGEREELNLTANR 16 Phospho (STY) _QIS(ph)DGEREELNLTANR_ QIS(1)DGEREELNLTANR QIS(143.59)DGEREELNLT(-143.59)ANR 0 0 1 1 O95816 O95816 O95816 BAG2 BAG family molecular chaperone regulator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.685424804688 3 642.296859 1923.86875 36661.5009221769 1.6977 0.0010905 118930 76.387 118930 76.388 719.018564729069 58.216 0.46996 58.216 57.963 58.433 0 41 15 4 0.98351242829423 0.00189719809297308 0.0201526742557539 9.33E-11 1 13614 190.91 167 2 29384000 10250 9868.3 9347.8 10423 9022.3 10838 8664.2 9743.8 8490.4 33673 9695.5 9325.4 9459.9 10675 9169.8 10895 8831.9 10831 8384.9 31932 1 1 1 1 1 1 1 1 1 1 3461 264 3049 3235 3835 3835 442 QISLPDLSQEEPQLK 15 Phospho (STY) _QIS(ph)LPDLSQEEPQLK_ QIS(1)LPDLSQEEPQLK QIS(50.73)LPDLS(-50.73)QEEPQLK 0 0 1 0 Q15390 Q15390 Q15390 MTFR1 Mitochondrial fission regulator 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.071228027344 3 602.295797 1803.86556 35347.4212896473 2.0875 0.0012573 253660 152.78 253660 152.78 755.070885251909 92.957 0.49569 92.957 92.715 93.21 0 39 16 3 0.780836548126498 0.00103216558393089 0.0134330327949251 1.1428E-11 1 21637 211.16 180.21 2 9294900 5365.4 6815.6 5519.1 6754 5266.6 5097.8 4625.6 4916.9 7378.7 13976 5077.6 6438.1 5544.3 6912 5353 5207.7 4814.6 5360.1 7163.8 13274 1 1 1 1 1 1 1 1 1 1 3462 1073 3050 3236 3836 3836 1855 QISQDVK 7 Phospho (STY) _QIS(ph)QDVK_ QIS(1)QDVK QIS(78.51)QDVK 0 0 1 0 Q01433 Q01433 Q01433 AMPD2 AMP deaminase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.369995117188 2 449.207508 896.400462 38055.2807605057 0.94853 0.00042609 510150 229.16 510150 229.16 678.370300289168 47.528 0.65152 47.528 47.356 48.008 0 67 24 4 0.721928022863734 0.00205542513073625 0.0123541091276121 0.015686 1 10987 78.513 15.69 1 142880000 39012 76384 43903 69968 141950 39565 139280 84654 75579 12512 36934 72121 45122 71744 138170 41604 140160 83544 77276 13741 1 1 1 1 1 1 1 1 1 1 3463 836 3051 3237 3837 3837 1349 QISQDVKLEPDILLR 15 Phospho (STY) _QIS(ph)QDVKLEPDILLR_ QIS(1)QDVKLEPDILLR QIS(175.93)QDVKLEPDILLR 0 0 1 1 Q01433 Q01433 Q01433 AMPD2 AMP deaminase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.104553222656 3 616.32732 1845.96013 35967.7847315109 2.2819 0.0014064 247880 152.77 247880 152.78 769.436621433606 92.842 0.78853 92.842 92.512 93.301 0 101 26 5 0.969791184353985 0.00337827122334296 0.0425076206190447 2.1948E-09 1 21578 175.93 122.37 1 88795000 5942.4 7821 4641.3 8293.5 22156 6017.9 21436 14397 6881.6 18432 5618.2 7390.9 4961.4 8450.1 21426 6273.3 21456 14671 7407.4 17689 1 1 1 1 1 1 1 1 1 1 3464 836 3052 3238 3838 3838 1349 QITTSPITVR 10 Phospho (STY) _QITTSPIT(ph)VR_ QIT(0.107)T(0.245)S(0.245)PIT(0.404)VR QIT(-5.78)T(-2.17)S(-2.17)PIT(2.17)VR 0 0 1 0 O95835 O95835 O95835 LATS1 Serine/threonine-protein kinase LATS1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.392578125 2 598.307753 1194.60095 37904.2135303646 1.9258 0.0011522 191510 114.58 191510 114.58 712.888962308111 60.092 0.69257 60.092 59.736 60.429 0 71 23 4 0.880188755772243 0.00239132812117827 0.0610239343813073 0.029579 1 14046 62.104 34.618 4 89548000 24286 32650 26173 37420 24789 24840 22618 27055 36540 12278 22988 30871 26225 37929 25220 25511 23509 27422 35464 12187 1 1 1 1 1 1 1 1 1 1 3465 268 3053 3239 3839 3839 448;4361 QKETSPR 7 Phospho (STY) _QKETS(ph)PR_ QKET(0.029)S(0.971)PR QKET(-15.24)S(15.24)PR 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.374755859375 2 463.210582 924.40661 37661.3120445432 2.3395 0.0010837 494730 229.16 494730 229.16 692.373836694915 24.18 0.77919 24.18 23.992 24.771 0 71 26 5 0.9678905836656 0.00653600262638441 0.211934183806537 0.01136 1 5394 83.862 55.688 2 54046000 11720 12034 11987 11842 12980 11566 14002 12087 12776 1187.5 11091 11367 12069 12166 13127 11614 14170 12139 12658 1397.9 1 1 1 1 1 1 1 1 1 1 3466 1436 3054 3240 3840 3840 2641 QKSDAEEDGGTVSQEEEDR 19 Phospho (STY) _QKSDAEEDGGTVS(ph)QEEEDR_ QKSDAEEDGGT(0.002)VS(0.998)QEEEDR QKS(-110.5)DAEEDGGT(-26.61)VS(26.61)QEEEDR 0 0 1 1 P27824 P27824 P27824 CANX Calnexin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 883.397705078125 3 730.288646 2187.84411 33218.9344475175 2.0333 0.0014849 209200 152.78 209200 152.78 883.397628827453 33.801 0.43513 33.801 33.587 34.022 0 30 14 3 0.945605455252066 0.000795824016133541 0.00582695276112451 3.9116E-08 1 7581 168.92 150.41 3 11576000 8577 10006 9506 8896.9 11335 8541.9 12740 10431 12734 2522.9 8119.5 9446.3 9543.7 9197.1 11415 8606.3 12900 10466 12564 2617 1 1 1 1 1 1 1 1 1 1 3467 492 3055 3241 3841 3841 815;816 QKSDAEEDGGTVSQEEEDR 19 Phospho (STY) _QKS(ph)DAEEDGGTVSQEEEDR_ QKS(1)DAEEDGGTVSQEEEDR QKS(40.74)DAEEDGGT(-40.74)VS(-78.82)QEEEDR 0 0 1 1 P27824 P27824 P27824 CANX Calnexin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 883.401489257813 3 730.288646 2187.84411 32916.1265127908 1.7246 0.0012595 209200 152.78 209200 152.78 883.399298234781 35.435 0.60956 35.435 35.24 35.85 0 75 20 5 0.987735343298065 0.00488954336195046 0.086084371567321 2.9584E-23 1 7961 277.38 255.54 3 38130000 25066 24729 27501 23382 28399 26194 27654 29443 26989 5198.8 23728 23353 27561 24135 28756 26181 28167 29565 26658 5576.7 1 1 1 1 1 1 1 1 1 1 3468 492 3055 3241 3842 3842 815;816 QKSEEPSVSIPFLQTALLR 19 Phospho (STY) _QKSEEPS(ph)VSIPFLQTALLR_ QKS(0.178)EEPS(0.822)VSIPFLQTALLR QKS(-6.66)EEPS(6.66)VS(-54.6)IPFLQT(-144.96)ALLR 0 0 1 1 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.828796386719 3 741.718876 2222.1348 33223.6646194704 1.678 0.0012446 205980 152.78 205980 152.78 894.829311123875 100.71 0.25015 100.71 100.59 100.84 0 26 8 5 0.962590847228758 0.0184600512224798 0.456998359157619 2.6679E-23 1 23580 278.43 243.34 4 162620000 37631 39084 37646 38862 61079 41204 65303 50507 46887 37042 35608 36920 38202 39953 60642 41383 65766 51417 47044 36048 1 1 1 1 1 1 1 1 1 1 3469 1180 3056 3242 3843 3843 2045 QKSLTLTPTR 10 Phospho (STY) _QKS(ph)LTLTPTR_ QKS(0.983)LT(0.016)LT(0.001)PTR QKS(17.81)LT(-17.81)LT(-32.87)PT(-60.37)R 0 0 1 1 Q3V6T2 Q3V6T2 Q3V6T2 CCDC88A Girdin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.658569335938 3 408.883111 1223.6275 42993.3971143355 0.84051 0.00034367 373640 152.77 373640 152.78 561.992344407719 53.069 0.33882 53.069 52.984 53.323 0 28 12 3 0.923933962553465 0.000239046459461715 0.00143872878689031 0.00019206 1 12358 111.83 83.088 4 29699000 30383 14391 28505 13095 17641 30559 20136 20848 12922 3299.5 28743 13587 28682 13805 18572 29736 20180 21387 13056 3589.4 1 1 1 1 1 1 1 1 1 1 3470 1131 3057 3243 3844 3844 1969 QKSPAQSDSTTQR 13 Phospho (STY) _QKS(ph)PAQSDSTTQR_ QKS(1)PAQSDSTTQR QKS(40.02)PAQS(-40.02)DS(-53.75)T(-59.35)T(-63.46)QR 0 0 1 1 Q9UHB7 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.002380371094 3 505.226265 1512.65696 38385.0597322129 2.1031 0.0010625 302390 152.78 302390 152.78 658.001403486848 24.609 0.2315 24.609 24.481 24.713 0 20 7 3 0.976703326796217 0.00424415808125893 0.0559983011437657 0.00010473 1 5506 115.57 96.246 5 12634000 4558.2 6662.6 4722.9 7993.8 7610.2 5610.8 7620.5 6533.3 8214 2376.1 4313.9 6301.5 4781.6 8088.2 7553 5746.4 7772.8 6589.2 8079.5 2388.6 1 1 1 1 1 1 1 1 1 1 3471 2145 3058 3244 3845 3845 3864 QKSPEIHR 8 Phospho (STY) _QKS(ph)PEIHR_ QKS(1)PEIHR QKS(138.24)PEIHR 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 511.617156982422 3 358.841246 1073.50191 43215.9727422161 1.4103 0.00050607 425750 152.78 425750 152.78 511.616795005043 27.737 1.1143 27.737 27.35 28.465 -3.5527E-15 124 38 6 0.981462789238497 0.0186798604603293 0.206305300537616 3.1055E-05 1 6146 138.24 96.952 1 1055400000 40860 35730 39128 33664 26643 38405 29386 33738 35602 8776.8 38657 33741 39351 34767 27819 38242 29951 34287 34865 9045.2 1 1 1 1 1 1 1 1 1 1 3472 2072 3059 3245 3846 3846 3750 QKSPEIHRR 9 Phospho (STY) _QKS(ph)PEIHRR_ QKS(1)PEIHRR QKS(151.78)PEIHRR 0 0 1 2 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 423.240417480469 4 308.408031 1229.60302 48041.8857395009 0.23384 7.2117E-05 371530 114.58 371530 114.58 422.989708090365 24.295 0.60573 24.295 24.107 24.713 0 65 20 5 0.966434632649033 0.009966625666626 0.168897196817751 3.4852E-06 1 5420 151.78 125.37 1 63243000 26576 23153 27732 23070 20709 25574 23591 25228 22096 19692 25152 21872 27777 23733 21470 25555 23834 25912 21865 19126 1 1 1 1 1 1 1 1 1 1 3473 2072 3060 3246 3847 3847 3750 QKSYTLVVAK 10 Phospho (STY) _QKS(ph)YTLVVAK_ QKS(0.944)YT(0.056)LVVAK QKS(12.25)Y(-45.8)T(-12.25)LVVAK 0 0 1 1 O43491 O43491 O43491 EPB41L2 Band 4.1-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.713562011719 3 406.21609 1215.62644 38861.0107401813 1.95 0.00079212 564140 229.16 564140 229.16 635.379451337518 66.032 1.1476 66.032 65.659 66.807 0 148 38 6 0.990305268775535 0.0117825657460512 0.146813990078588 4.8097E-07 1 15461 168.5 126.95 3 609170000 38867 11739 42212 14246 35987 39014 41506 35700 15898 11353 36791 11104 42247 14873 36941 37980 41284 36280 16772 11517 1 1 1 1 1 1 1 1 1 1 3474 114 3061 3247 3848 3848 198 QKTDEDD 7 Unmodified _QKTDEDD_ 0 0 0 1 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.838317871094 2 425.674879 849.335206 38381.1291821043 2.0711 0.00088163 538350 229.16 538350 229.16 654.837911791586 25.369 0.57779 25.369 25.181 25.759 3.5527E-15 52 19 5 0.991440706716284 0.0085881380609521 0.112768175204504 0.04042 1 5641 40.987 33.767 1 70839000 34204 16367 34260 14530 29887 32153 33108 25221 14848 1389.5 32366 15451 34447 15315 30616 31358 33046 25609 15425 1892.1 1 1 1 1 1 1 1 1 1 1 3475 311 3062 3248 3849 3849 QLEEPGAGTPSPVR 14 Phospho (STY) _QLEEPGAGTPS(ph)PVR_ QLEEPGAGT(0.035)PS(0.965)PVR QLEEPGAGT(-14.47)PS(14.47)PVR 0 0 1 0 Q63ZY6;Q96P11 Q63ZY6 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 874.439453125 2 759.35342 1516.69229 34040.4066959388 1.7044 0.0012943 150890 114.58 150900 114.58 873.935622258357 49.884 0.35255 49.884 49.689 50.041 0 30 11 3 0.975307152842453 0.000856782190726211 0.0393042418100367 0.015421 1 11572 75.969 48.107 2 17061000 13107 12467 14014 12835 11391 13047 10911 12454 15115 9892.3 12406 11779 14026 13160 11712 13079 11245 12814 14735 9603 1 1 1 1 1 1 1 1 1 1 3476 1220 3063 3249 3850 3850 2148 QLEVEPEEPEAENK 14 Unmodified _QLEVEPEEPEAENK_ 0 0 0 0 P36776 P36776 P36776 LONP1 Lon protease homolog, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.704284667969 3 547.59318 1639.75771 36572.2126457041 1.856 0.0010163 278990 152.77 278990 152.78 700.36531515135 57.508 0.48425 57.508 57.276 57.76 0 42 14 4 0.843228184966282 0.00654569220894064 0.167930731664208 0.00011635 2 13446 118.16 92.841 1 32643000 30084 38109 32997 39425 38149 34866 36425 37503 41673 16942 28478 36008 33118 40327 38390 35217 37304 38026 40896 16821 2 2 2 2 2 2 2 2 2 2 3477 557 3064 3250 3851;3852 3851 QLHLEGASLELSDDDTESK 19 Phospho (STY) _QLHLEGASLELS(ph)DDDTESK_ QLHLEGASLELS(1)DDDTESK QLHLEGAS(-82.84)LELS(82.84)DDDT(-88.27)ES(-116.95)K 0 0 1 0 P35580 P35580 P35580 MYH10 Myosin-10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.097412109375 3 722.986127 2165.93655 32984.7214977614 1.803 0.0013036 211310 152.78 211310 152.78 876.095468443051 76.487 2.7697 76.487 76.126 78.895 -1.4211E-14 182 95 3 0.971761226025721 0.00605543669314855 0.206734467352756 8.8877E-23 2 17910 256.4 226.63 4 18630000 7406.2 11047 8413 11548 9741.4 8793 11991 11112 12624 94063 7012 10439 8434 11783 9839.6 9142.8 12115 13890 12429 88829 2 2 2 2 2 2 2 2 2 2 3478 548 3065 3251 3853;3854 3853 887 QLHLEGASLELSDDDTESK 19 Phospho (STY) _QLHLEGASLELS(ph)DDDTESK_ QLHLEGASLELS(1)DDDTESK QLHLEGAS(-43.22)LELS(43.22)DDDT(-43.79)ES(-58.87)K 0 0 1 0 P35580 P35580 P35580 MYH10 Myosin-10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.098876953125 3 722.986127 2165.93655 33663.2642508453 1.6926 0.0012237 211310 152.78 211310 152.78 876.43019180284 80.803 1.1749 80.803 80.132 81.307 1.4211E-14 66 39 2 0.737237603014222 0.000600172330518619 0.00763304171564994 2.0618E-07 1 18911 138.93 115.13 4 10615000 3157.9 4168.6 5474.1 4400.8 4116.4 4123.5 4377.4 4245.7 5265.2 29254 2996.8 3939.3 5362.8 4499.9 4262.1 4202.2 4467.6 5135.5 5157.5 27645 1 1 1 1 1 1 1 1 1 1 3479 548 3065 3251 3855 3855 887 QLHVLVPQSPPTDLPGLTR 19 Phospho (STY) _QLHVLVPQS(ph)PPTDLPGLTR_ QLHVLVPQS(0.992)PPT(0.007)DLPGLT(0.001)R QLHVLVPQS(21.31)PPT(-21.31)DLPGLT(-32.93)R 0 0 1 0 O95402 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.101257324219 3 716.711945 2147.114 36036.8055710435 1.04 0.00074536 106580 76.388 106580 76.389 793.434341854007 87.801 0.67381 87.801 87.408 88.082 1.4211E-14 55 22 3 0.990617348094531 0.00163087891121902 0.0187722459427335 0.0090173 1 20469 77.19 52.652 3 9866000 7249.2 6625.8 6825.9 5545.8 6005.6 6883 5408.9 7215.8 6306.3 16401 6858 6253 6886.5 5781.7 6135.4 6874.5 5559 7719.2 6184.3 15610 1 1 1 1 1 1 1 1 1 1 3480 248 3066 3252 3856 3856 419 QLLHLCLQDGGSPPGPGDLAEER 23 Phospho (STY) _QLLHLCLQDGGS(ph)PPGPGDLAEER_ QLLHLCLQDGGS(1)PPGPGDLAEER QLLHLCLQDGGS(96.46)PPGPGDLAEER 0 0 1 0 Q96FS4 Q96FS4 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.452331542969 3 847.059744 2538.1574 32937.1827745244 1.3947 0.0011814 90180 76.388 90182 76.389 923.447348691898 85.882 0.56874 85.882 85.59 86.159 1.4211E-14 34 19 3 0.50397945005602 0.00138545540690599 0.030457391815249 0.0019473 1 20059 96.46 86.061 1 7419300 4075.8 3799.4 4761.6 3992.1 4595.7 3485.2 5189.9 4541.5 5237 31351 3859.4 3590.3 4754.3 4079 4682 3588.3 5255.6 5459.1 5165.4 29626 1 1 1 1 1 1 1 1 1 1 3481 1678 3067 3253 3857 3857 3089 QLMEQDASSSPSAQVIGLK 19 Phospho (STY) _QLMEQDASSSPS(ph)AQVIGLK_ QLMEQDAS(0.011)S(0.048)S(0.117)PS(0.824)AQVIGLK QLMEQDAS(-18.83)S(-12.36)S(-8.47)PS(8.47)AQVIGLK 0 0 1 0 Q9H4L5 Q9H4L5 Q9H4L5 OSBPL3 Oxysterol-binding protein-related protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.103759765625 3 690.325538 2067.95479 34083.6746253587 2.0547 0.0014184 221310 152.78 221310 152.78 843.102955464468 82.472 0.62222 82.472 82.201 82.823 0 60 21 4 0.500578943155843 0.00125333770809049 0.0213234460724872 0.015008 1 19287 63.302 36.867 4 14257000 4337.2 12895 5586.2 13918 7093.9 6979.8 7864 9677.6 15388 14024 4108.8 12188 5573.1 14117 7127.9 7366.1 8174 10025 14864 13429 1 1 1 1 1 1 1 1 1 1 3482 1939 3068 3254 3858 3858 3513 QLQEDQENNLQDNQTSNSSPCR 22 Phospho (STY) _QLQEDQENNLQDNQTSNSS(ph)PCR_ QLQEDQENNLQDNQTSNS(0.02)S(0.98)PCR QLQEDQENNLQDNQT(-68.68)S(-64.32)NS(-16.94)S(16.94)PCR 0 0 1 0 Q92576 Q92576 Q92576 PHF3 PHD finger protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 972.424255371094 3 895.699603 2684.07698 32090.4518266897 1.0427 0.00093397 85282 76.387 85283 76.388 972.087431001004 40.623 0.35154 40.623 40.449 40.8 0 38 11 4 0.961221850898765 0.00253186608798679 0.0144016572850666 7.7387E-17 1 9243 219.82 208.29 4 27802000 6459.4 4044.3 7528.6 4567.8 6279.9 6471.5 6462.7 6315.3 5068.8 2286.7 6116.2 3823.5 7504.4 4688.7 6447.8 6404.1 6531.5 6409.6 5060.5 2299.4 1 1 1 1 1 1 1 1 1 1 3483 1602 3069 3255 3859 3859 2943 QLQQSPTPTCPTPELGSPLPSR 22 Phospho (STY) _QLQQS(ph)PTPTCPTPELGSPLPSR_ QLQQS(0.917)PT(0.083)PTCPTPELGSPLPSR QLQQS(10.44)PT(-10.44)PT(-32.78)CPT(-78.8)PELGS(-102.38)PLPS(-105)R 0 0 1 0 Q8IWY9 Q8IWY9 Q8IWY9 CDAN1 Codanin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.115051269531 3 824.392723 2470.15634 33280.808563001 1.9792 0.0016317 92660 76.388 92662 76.39 901.114110884141 69.344 0.45657 69.344 69.12 69.577 0 50 15 4 0.977282673066367 0.00271492279641218 0.0364212612372419 3.8087E-05 1 16290 118.19 90.011 6 13923000 5265.5 5678.9 5292.2 7046.8 4773.8 5309.3 4578.6 5886 6289.6 10635 4982.6 5372.4 5320.7 7124 4873.9 5426.6 4716.8 6202.2 6133.4 10150 1 1 1 1 1 1 1 1 1 1 3484 1419 3070 3256 3860 3860 2585 QLSESESSLEMDDER 15 Phospho (STY) _QLS(ph)ESESSLEMDDER_ QLS(0.892)ES(0.066)ES(0.041)S(0.001)LEMDDER QLS(11.28)ES(-11.28)ES(-13.34)S(-30.59)LEMDDER 0 0 1 0 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1032.93591308594 2 917.856061 1833.69757 31185.0980664446 1.4224 0.0013056 124840 114.58 124840 114.58 1032.93779598996 59.139 0.28999 59.139 58.988 59.278 0 21 9 3 0.91748556972904 0.000347583735686831 0.0169215940246453 0.00016963 1 13873 116.06 95.255 4 8188700 6902.2 5299.6 7310.1 5703.9 6553 7301.7 7958.8 8497.5 6872.6 19434 6532.8 5008.7 7330.8 5857.6 6713.6 7299.2 8004.1 9062.9 6827.2 18496 1 1 1 1 1 1 1 1 1 1 3485 1101 3071 3257 3861 3861 1914 QLSESFK 7 Phospho (STY) _QLSES(ph)FK_ QLS(0.031)ES(0.969)FK QLS(-14.96)ES(14.96)FK 0 0 1 0 Q08945 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.865295410156 2 459.702058 917.389563 38101.7696493956 1.7624 0.00081018 498500 229.16 498510 229.16 688.865430250335 60.743 1.0525 60.743 60.194 61.247 7.1054E-15 85 35 4 0.903525899272363 0.00474238962429957 0.12677414056165 0.014227 1 14219 81.017 42.93 2 90740000 54726 53714 55525 51666 113490 45761 123810 78616 47659 8564 51788 50730 56594 53079 111820 46560 123450 77843 50255 9883.5 1 1 1 1 1 1 1 1 1 1 3486 890 3072 3258 3862 3862 1453 QLSESFKSK 9 Phospho (STY) _QLSES(ph)FKSK_ QLS(0.001)ES(0.996)FKS(0.004)K QLS(-31.99)ES(24.45)FKS(-24.45)K 0 0 1 1 Q08945 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.010864257813 3 378.512795 1132.51655 40217.7682988714 2.0657 0.00078189 605430 229.16 605430 229.16 607.675438953808 56.757 0.50223 56.757 56.541 57.044 0 62 16 5 0.977145989981934 0.00813608658705516 0.129474685457042 0.0079921 1 13241 75.589 26.166 3 71871000 16132 14418 14475 12143 39929 14433 48764 25377 15632 3492.8 15259 13607 15000 12643 39111 14509 48306 25136 16829 3876.2 1 1 1 1 1 1 1 1 1 1 3487 890 3073 3259 3863 3863 1453 QLSLEGSGLGVEDLK 15 Phospho (STY) _QLS(ph)LEGSGLGVEDLK_ QLS(0.994)LEGS(0.006)GLGVEDLK QLS(22.57)LEGS(-22.57)GLGVEDLK 0 0 1 0 Q9UMZ2 Q9UMZ2 Q9UMZ2 SYNRG Synergin gamma MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.04345703125 3 542.265837 1623.77568 NaN NaN NaN NaN NaN NaN NaN NaN 91.793 1 91.793 91.293 92.293 0 NaN NaN NaN 0.00012484 1 21387 110.75 86.365 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3488 2200 3074 3260 3864 3864 3986 QLSLEGSGLGVEDLKDNTPSGK 22 Phospho (STY) _QLS(ph)LEGSGLGVEDLKDNTPSGK_ QLS(0.997)LEGS(0.003)GLGVEDLKDNTPSGK QLS(24.75)LEGS(-24.75)GLGVEDLKDNT(-129.18)PS(-147.25)GK 0 0 1 1 Q9UMZ2 Q9UMZ2 Q9UMZ2 SYNRG Synergin gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1004.87371826172 3 775.372093 2323.09445 31948.3986205049 1.8804 0.001458 295550 229.16 295550 229.16 1005.20196113856 83.692 0.37282 83.692 83.526 83.899 0 33 12 4 0.949482642954831 0.00251607506300373 0.0335100173325505 8.8155E-12 1 19573 183.48 159.21 4 8575500 10060 7164.3 9747.3 8217.5 9254.2 8545.1 10412 10890 7500.6 27033 9518.2 6773.8 9829.1 8378.5 9433.9 8630.9 10464 11647 7524.3 25706 1 1 1 1 1 1 1 1 1 1 3489 2200 3075 3261 3865 3865 3986 QLSLPLTQSK 10 Phospho (STY) _QLS(ph)LPLTQSK_ QLS(1)LPLTQSK QLS(75.14)LPLT(-75.14)QS(-123.1)K 0 0 1 0 Q9C0I1 Q9C0I1 Q9C0I1 MTMR12 Myotubularin-related protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.650451660156 3 398.875845 1193.6057 42038.9419372819 1.5877 0.00063331 383020 152.78 383020 152.78 551.651092538778 80.651 0.67418 80.651 80.285 80.959 0 70 22 4 0.942502022897321 0.00243859975511185 0.0309982397204059 1.4139E-06 1 18832 154.1 125.14 3 39607000 5757 3288.9 5122.6 3750 8998.7 6450.2 8168.7 6600.2 3238.7 2542.9 5445.2 3109.6 5240.6 3865.6 8886.7 6351.5 8219.9 6691.3 3404.8 2547.2 1 1 1 1 1 1 1 1 1 1 3490 1888 3076 3262 3866 3866 3441 QLSPESLGTLQFGELNLGK 19 Phospho (STY) _QLS(ph)PESLGTLQFGELNLGK_ QLS(0.997)PES(0.003)LGTLQFGELNLGK QLS(25.11)PES(-25.11)LGT(-105.05)LQFGELNLGK 0 0 1 0 P78559 P78559 P78559 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 857.128112792969 3 704.352193 2110.03475 33649.2299779943 1.5738 0.0011085 216900 152.78 216900 152.78 857.461845734066 100.91 0.20061 100.91 100.81 101.01 0 13 6 3 0.963623094120455 0.00406543144190542 0.100542313551775 1.5608E-31 1 23661 307.48 251 3 90609000 5462.2 41558 7298 42054 8486.6 4490.2 9483.8 17504 46238 35289 5175.5 39261 7259.5 42546 8590.8 6407 10612 18117 44064 33634 1 1 1 1 1 1 1 1 1 1 3491 806 3077 3263 3867 3867 1288 QLSPQSK 7 Phospho (STY) _QLS(ph)PQSK_ QLS(0.998)PQS(0.002)K QLS(27.79)PQS(-27.79)K 0 0 1 0 Q86VM9 Q86VM9 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.366882324219 2 434.202225 866.389898 38645.8808726173 2.0839 0.00090485 527780 229.16 527780 229.16 663.365203846161 41.002 0.85572 41.002 40.599 41.455 0 91 29 4 0.961998381446274 0.00297899523032825 0.0281711622147664 0.0044408 1 9288 97.813 30.48 2 321890000 37993 48011 37164 45256 37370 35193 42457 41517 48900 13858 35948 45338 37482 46474 37989 35831 43149 41817 47976 14010 1 1 1 1 1 1 1 1 1 1 3492 1380 3078 3264 3868 3868 2500 QLSSGVSEIR 10 Phospho (STY) _QLS(ph)SGVSEIR_ QLS(0.578)S(0.227)GVS(0.195)EIR QLS(4.05)S(-4.05)GVS(-4.71)EIR 0 0 1 0 P04792 P04792 P04792 HSPB1 Heat shock protein beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.856384277344 2 578.27391 1154.53327 37137.2203075879 0.97086 0.00056142 198140 114.58 198140 114.58 692.856144627641 54.539 1.7433 54.539 54.089 55.833 -7.1054E-15 181 59 5 0.928690313787088 0.00938824118553511 0.213311909862983 1.1866E-07 1 12657 174.94 111.52 3 5863600000 99269 69359 100350 66504 8091.9 87501 12462 58199 73158 3177.5 93938 65505 99866 68796 13778 86408 14138 59609 69611 4338.9 1 1 1 1 1 1 1 1 1 1 3493 294 3079 3265 3869 3869 486 QLSSSSSYSGDISR 14 Phospho (STY) _QLSS(ph)SSSYSGDISR_ QLS(0.23)S(0.335)S(0.335)S(0.071)S(0.028)YSGDISR QLS(-1.65)S(0)S(0)S(-6.72)S(-10.84)Y(-86.46)S(-31.55)GDIS(-89.47)R 0 0 1 0 P33527 P33527 P33527 ABCC1 Multidrug resistance-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 891.909484863281 2 777.327599 1552.64065 34957.7156161828 0.65927 0.00051247 147400 114.58 147400 114.58 891.907355300851 47.526 0.25575 47.526 47.373 47.629 0 15 10 2 0.826218744830622 0.00041533424078116 0.00348483532189508 1.814E-10 1 10991 193.56 158.21 8 27240000 10683 17760 11065 16692 30915 10743 34264 19859 18312 12370 10110 16772 11370 17109 30233 11172 34280 19940 18745 12107 1 1 1 1 1 1 1 1 1 1 3494 533 3080 3266 3870 3870 866;867 QLSSTSPLAPYPTSQMVSSDR 21 Phospho (STY) _QLS(ph)STSPLAPYPTSQMVSSDR_ QLS(0.692)S(0.219)T(0.07)S(0.019)PLAPYPTSQMVSSDR QLS(5)S(-5)T(-9.94)S(-15.73)PLAPY(-65.04)PT(-81.06)S(-85.51)QMVS(-95.85)S(-95.67)DR 0 0 1 0 Q6UUV7 Q6UUV7 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.744689941406 3 778.022407 2331.04539 31928.486012843 1.4134 0.0010996 98184 76.389 98185 76.39 854.745146305356 76.335 0.37516 76.335 76.126 76.501 0 34 12 4 0.951928507953317 0.00311644455954156 0.0904939176350657 0.00064124 1 17915 99.836 84.908 9 10674000 4501.5 4802.8 5553.7 5155.4 4569.2 4944.5 5728.7 4560.4 4878.2 14906 4263.5 4539 5521.9 5268.5 4710.5 4988.8 5752.4 5038.4 4849.4 14141 1 1 1 1 1 1 1 1 1 1 3495 1282 3081 3267 3871 3871 2283 QLTQPETHFGR 11 Phospho (STY) _QLT(ph)QPETHFGR_ QLT(1)QPETHFGR QLT(36.19)QPET(-36.19)HFGR 0 0 1 0 Q9UJU6 Q9UJU6 Q9UJU6 DBNL Drebrin-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 541.937316894531 3 465.213519 1392.61873 41954.5425611058 0.7085 0.0003296 164200 76.388 164200 76.388 541.601142541437 47.956 0.56132 47.956 47.656 48.217 0 55 18 4 0.951197906025417 0.00272286660687052 0.0517992206941537 0.002387 1 11093 97.093 79.666 2 46916000 12449 7607.4 13693 8635.5 7538.7 13130 7083.2 9420.4 7008.2 2863.1 11785 7192.3 13640 8876.1 8007.1 12919 7229.9 9679.4 6918.2 2914 1 1 1 1 1 1 1 1 1 1 3496 2161 3082 3268 3872 3872 4810 QLVAGNSPK 9 Phospho (STY) _QLVAGNS(ph)PK_ QLVAGNS(1)PK QLVAGNS(103.46)PK 0 0 1 0 Q96EU6 Q96EU6 Q96EU6 RRP36 Ribosomal RNA processing protein 36 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 484.607177734375 3 331.830347 992.469211 44208.5636286149 0.18591 6.1691E-05 460400 152.78 460400 152.78 484.606072338158 48.282 0.4108 48.282 48.094 48.505 0 41 13 4 0.966322143088977 0.00231083763822778 0.0274476322384002 0.00038751 1 11176 103.46 60.744 1 19464000 10577 13851 11550 12531 7140.1 12509 7498.1 11363 13525 1779.6 10013 13077 11521 12947 7516.9 12529 7780.2 11496 13090 1938.7 1 1 1 1 1 1 1 1 1 1 3497 1673 3083 3269 3873 3873 3079 QLVAGNSPK 9 Phospho (STY) _QLVAGNS(ph)PK_ QLVAGNS(1)PK QLVAGNS(83.2)PK 0 0 1 0 Q96EU6 Q96EU6 Q96EU6 RRP36 Ribosomal RNA processing protein 36 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.405334472656 2 497.241882 992.469211 37510.2515835944 1.3932 0.00069278 460870 229.16 460870 229.16 726.405008782039 48.297 0.46693 48.297 48.038 48.505 -7.1054E-15 54 15 4 0.627020649310719 0.00313614583138123 0.0513350118434511 0.0097167 1 11179 83.204 50.598 1 46681000 60195 57513 59557 58980 33075 55128 29515 52737 67727 10789 56957 54339 59676 60408 35114 55420 31261 53316 65206 11379 1 1 1 1 1 1 1 1 1 1 3498 1673 3083 3269 3874 3874 3079 QLVAGNSPKK 10 Phospho (STY) _QLVAGNS(ph)PKK_ QLVAGNS(1)PKK QLVAGNS(110.44)PKK 0 0 1 1 Q96EU6 Q96EU6 Q96EU6 RRP36 Ribosomal RNA processing protein 36 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.692810058594 3 374.528668 1120.56417 40111.6752725159 2.0483 0.00076716 611870 229.16 611870 229.16 603.691832794725 46.881 0.51839 46.881 46.632 47.15 7.1054E-15 61 17 5 0.717800291466601 0.00870600927138922 0.0447726010830494 0.00023641 1 10831 110.44 72.145 1 57116000 70283 73192 65566 63841 42536 58700 39553 63830 69689 11955 66488 69088 66005 66038 44512 59154 41230 64187 67484 12734 1 1 1 1 1 1 1 1 1 1 3499 1673 3084 3270 3875 3875 3079 QMNMSPPPGNAGPVIMSIEEK 21 2 Oxidation (M),Phospho (STY) _QM(ox)NM(ox)S(ph)PPPGNAGPVIMSIEEK_ QM(1)NM(1)SPPPGNAGPVIMSIEEK QMNMS(1)PPPGNAGPVIMSIEEK QM(107.83)NM(103.99)SPPPGNAGPVIM(-103.99)SIEEK QMNMS(112.9)PPPGNAGPVIMS(-112.9)IEEK 0 2 1 0 Q86U42 Q86U42 Q86U42 PABPN1 Polyadenylate-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 933.455871582031 3 780.342095 2338.00446 32187.5553028138 1.8925 0.0014768 195780 152.78 195780 152.78 933.452462203773 84.816 1.0585 84.816 84.271 85.329 0 134 36 5 0.978662177440744 0.00431516986052739 0.109530549597459 2.1831E-05 3 19769 127.9 109.18 6 18265000 17569 27037 19218 25703 18465 19513 21087 23979 28762 92664 16631 25534 19252 26373 18828 20065 21549 26672 28054 87809 3 3 3 3 3 3 3 3 3 3 3500 1364 3085 3271 3876;3877;3878 3876 168;169 2474 QMNMSPPPGNAGPVIMSIEEK 21 Oxidation (M),Phospho (STY) _QM(ox)NMS(ph)PPPGNAGPVIMSIEEK_ QM(0.838)NM(0.162)SPPPGNAGPVIMSIEEK QMNMS(1)PPPGNAGPVIMSIEEK QM(7.12)NM(-7.12)SPPPGNAGPVIM(-83.81)SIEEK QMNMS(98.49)PPPGNAGPVIMS(-98.49)IEEK 0 1 1 0 Q86U42 Q86U42 Q86U42 PABPN1 Polyadenylate-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 928.120056152344 3 775.010457 2322.00954 32408.5290677668 1.6887 0.0013088 197130 152.78 197130 152.78 928.119627005797 88.585 2.3095 88.585 87.704 90.014 0 240 79 5 0.603188980659194 0.0053837486064039 0.0857275598686867 4.5906E-05 2 20709 115.06 96.339 6 32736000 15793 25706 17606 27818 18554 18421 19775 25390 28869 81306 14951 24295 17638 28283 18798 19124 20319 27648 28099 77147 2 2 2 2 2 2 2 2 2 2 3501 1364 3085 3272 3879;3880 3880 168;169 2474 QMNMSPPPGNAGPVIMSIEEK 21 Phospho (STY) _QMNMS(ph)PPPGNAGPVIMSIEEK_ QMNMS(1)PPPGNAGPVIMSIEEK QMNMS(154.73)PPPGNAGPVIMS(-154.73)IEEK 0 0 1 0 Q86U42 Q86U42 Q86U42 PABPN1 Polyadenylate-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 922.789978027344 3 769.678818 2306.01463 32710.6262756399 1.694 0.0013038 198490 152.78 198490 152.78 922.788099186105 95.342 1.4345 95.342 94.682 96.116 -1.4211E-14 230 49 6 0.970530281844147 0.00754674409739452 0.145109850813478 1.7039E-11 2 22269 191.53 174.04 2 71687000 14313 23952 16175 23102 16268 15498 17600 22593 26336 84806 13551 22622 16184 23650 16531 16122 18090 24943 25615 80377 2 2 2 2 2 2 2 2 2 2 3502 1364 3085 3273 3881;3882 3882 2474 QMSFDLTK 8 Phospho (STY) _QMS(ph)FDLTK_ QMS(0.99)FDLT(0.01)K QMS(19.96)FDLT(-19.96)K 0 0 1 0 Q9ULH0 Q9ULH0 Q9ULH0 KIDINS220 Kinase D-interacting substrate of 220 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.38671875 2 525.2223 1048.43005 36348.5732985796 1.8294 0.00096084 436310 229.16 436310 229.16 754.883730201729 81.088 1.131 81.088 80.609 81.74 0 89 38 3 0.833588837604159 0.00284239399097222 0.0763375279667101 0.0066597 1 18953 92.112 73.332 2 28516000 17865 63816 18444 62253 23144 14490 21858 37224 64599 44624 16907 60276 18594 63247 23231 17025 23482 37802 61927 42881 1 1 1 1 1 1 1 1 1 1 3503 2183 3086 3274 3883 3883 3948 QNGSNDSDRYSDNEEDSKIELK 22 Phospho (STY) _QNGSNDSDRYS(ph)DNEEDSKIELK_ QNGSNDSDRYS(1)DNEEDSKIELK QNGS(-76.19)NDS(-69.81)DRY(-98.94)S(69.81)DNEEDS(-92.86)KIELK 0 0 1 2 P42167 P42167 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.649658203125 4 656.525246 2622.07188 34338.8674909749 2.1379 0.0014036 261790 171.87 261790 171.87 828.648359695287 56.581 0.91155 56.581 56.308 57.22 -7.1054E-15 123 30 6 0.763421915649539 0.00469198959169447 0.0583199511359097 2.8501E-17 1 13259 239.39 209.36 5 53982000 46825 41431 50489 39242 35777 51961 38872 45253 48636 53786 44322 39126 50455 40630 37228 51533 39687 47273 47575 51693 1 1 1 1 1 1 1 1 1 1 3504 582 3087 3275 3884 3884 943 QNGSNDSDRYSDNEEGK 17 Phospho (STY) _QNGSNDSDRYS(ph)DNEEGK_ QNGSNDSDRYS(1)DNEEGK QNGS(-95.13)NDS(-62.92)DRY(-104.38)S(62.92)DNEEGK 0 0 1 1 P42166 P42166 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.695739746094 3 665.583505 1993.72869 34960.2510304011 2.2057 0.0014681 229530 152.77 229540 152.78 818.693130128866 29.671 0.70523 29.671 29.458 30.163 0 63 23 4 0.984248979125541 0.00302846017077768 0.0195903815160562 2.0073E-16 1 6608 242.11 222.12 4 25097000 16048 21506 15295 20637 13766 17778 14409 18254 22766 2107 15183 20311 15427 21196 14077 17958 14865 18355 22109 2406.5 1 1 1 1 1 1 1 1 1 1 3505 581 3088 3276 3885 3885 937 QNHTPRK 7 Phospho (STY) _QNHT(ph)PRK_ QNHT(1)PRK QNHT(67.99)PRK 0 0 1 1 Q15233 Q15233 Q15233 NONO Non-POU domain-containing octamer-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 473.594451904297 3 320.818553 959.433828 45521.1483551577 1.2102 0.00038824 476200 152.78 476210 152.78 473.593928997052 22.088 0.54117 22.088 21.772 22.313 0 43 18 4 0.898070087159706 0.011447696945524 0.133248242600959 0.044932 1 4970 67.993 37.738 1 7647800 14962 3314.5 14787 2533.6 2889 13327 2548.7 7398.7 3451.4 4355.9 14157 3126.7 14754 2822.5 3630.4 12810 2635.5 7782.4 3367.2 4272.8 1 1 1 1 1 1 1 1 1 1 3506 1065 3089 3277 3886 3886 4569 QNLLSVGDYR 10 Phospho (STY) _QNLLS(ph)VGDYR_ QNLLS(0.995)VGDY(0.005)R QNLLS(22.88)VGDY(-22.88)R 0 0 1 0 O60264 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.368347167969 2 622.787185 1243.55982 38729.7561886379 1.53 0.00095285 183980 114.58 183980 114.58 737.36946514349 75.968 0.35441 75.968 75.86 76.215 0 19 11 2 0.960253282208028 0.000500949540127446 0.0191279161497583 0.03884 1 17843 55.196 34.326 2 3905700 10765 8725.6 10386 9711 7669.7 12789 10621 11408 8822.8 11627 10185 8248.4 10453 9960.3 7983.7 12686 10620 11847 8781.7 11212 1 1 1 1 1 1 1 1 1 1 3507 138 3090 3278 3887 3887 234 QNSGSTLTFNPSSMAVSFTSGSCQK 25 Phospho (STY) _QNS(ph)GSTLTFNPSSMAVSFTSGSCQK_ QNS(0.851)GS(0.144)T(0.005)LTFNPSSMAVSFTSGSCQK QNS(7.71)GS(-7.71)T(-22.56)LT(-50.48)FNPS(-101.5)S(-106.11)MAVS(-130.96)FT(-146.87)S(-153.95)GS(-160.04)CQK 0 0 1 0 Q6XZF7 Q6XZF7 Q6XZF7 DNMBP Dynamin-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.8330078125 3 901.719058 2702.13535 30523.3121180128 1.7214 0.0015522 169430 152.78 169430 152.78 1054.82841866284 97.217 0.57759 97.217 96.894 97.472 1.4211E-14 71 19 5 0.987419491254663 0.00333169017522885 0.0323767519429136 1.5505E-08 2 22567 171.89 154.81 10 16589000 5413.5 5425.9 5640 6737.8 5275.4 6851.6 7163.2 7069.7 6063.1 63361 5123.4 5133.2 5665.3 6839.9 5400.7 6984.7 7170.8 8992.2 6029.1 59825 2 2 2 2 2 2 2 2 2 2 3508 1287 3091 3279 3888;3889 3888 2292 QNSIENDIEEK 11 Phospho (STY) _QNS(ph)IENDIEEK_ QNS(1)IENDIEEK QNS(160.04)IENDIEEK 0 0 1 0 Q12830 Q12830 Q12830 BPTF Nucleosome-remodeling factor subunit BPTF MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 928.956726074219 2 699.792861 1397.57117 33101.6524541454 2.2099 0.0015465 327470 229.16 327480 229.17 928.956744439892 66.692 0.51763 66.692 66.403 66.921 0 26 17 2 0.960995362826765 0.000627499332892205 0.0392066959624213 6.0366E-07 1 15676 160.04 75.868 1 9310200 12105 8648.7 11892 8510.1 19434 12947 16277 14692 9728.1 28122 11454 8169.4 12073 8817.6 19226 12854 16541 15517 9876.4 26820 1 1 1 1 1 1 1 1 1 1 3509 904 3092 3280 3890 3890 1489 QNSLGSNEEK 10 Phospho (STY) _QNS(ph)LGSNEEK_ QNS(0.997)LGS(0.003)NEEK QNS(25.77)LGS(-25.77)NEEK 0 0 1 0 O75554 O75554 O75554 WBP4 WW domain-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.407287597656 2 593.242807 1184.47106 34528.7434731339 1.8516 0.0010984 386290 229.16 386290 229.16 822.403391930859 37.443 0.26283 37.443 37.334 37.597 0 17 10 2 0.903734354307014 0.000660696632020409 0.00287158898755155 2.0799E-09 1 8455 177.77 123.19 2 49938000 91140 15919 88408 16314 23908 89848 26907 45173 18115 3982.3 86232 15040 88395 17908 28105 86225 27004 47163 18247 4795.3 1 1 1 1 1 1 1 1 1 1 3510 192 3093 3281 3891 3891 337 QNSLGSNEEK 10 Phospho (STY) _QNS(ph)LGSNEEK_ QNS(0.997)LGS(0.003)NEEK QNS(25.65)LGS(-25.65)NEEK 0 0 1 0 O75554 O75554 O75554 WBP4 WW domain-binding protein 4 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.60498046875 3 395.830964 1184.47106 NaN NaN NaN NaN NaN NaN NaN NaN 37.492 1 37.492 36.992 37.992 0 NaN NaN NaN 0.040373 1 8475 63.79 38.131 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3511 192 3093 3281 3892 3892 337 QNSTSLTGKPGALPANLDDMK 21 Phospho (STY) _QNS(ph)TSLTGKPGALPANLDDMK_ QNS(0.802)T(0.15)S(0.04)LT(0.009)GKPGALPANLDDMK QNS(7.29)T(-7.29)S(-13.02)LT(-19.65)GKPGALPANLDDMK 0 0 1 1 Q969V6 Q969V6 Q969V6 MKL1 MKL/myocardin-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 975.851135253906 3 746.687247 2237.03991 31224.1869822851 1.8939 0.0014142 306910 229.16 306910 229.16 976.185398236594 78.276 0.48437 78.276 78.036 78.521 0 48 16 5 0.760071860985086 0.00157109371948698 0.0694668633430806 1.0962E-07 1 18363 141.49 115.56 4 12396000 10592 5581.1 11892 5173.1 9029.3 12323 9619.8 8420.5 6379.5 16041 10028 5269.9 11865 5451.4 9337.3 12014 9675 9080.9 6432.1 15300 1 1 1 1 1 1 1 1 1 1 3512 1640 3094 3282 3893 3893 3034 QNTASPGSPVNSHLPGSPK 19 2 Phospho (STY) _QNTASPGS(ph)PVNSHLPGS(ph)PK_ QNTAS(0.002)PGS(0.997)PVNS(0.001)HLPGS(1)PK QNT(-38.62)AS(-26.42)PGS(26.42)PVNS(-31.43)HLPGS(73.45)PK 0 0 2 0 Q8NDX1 Q8NDX1 Q8NDX1 PSD4 PH and SEC7 domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 832.072387695313 3 678.96091 2033.8609 34132.8964257404 1.8397 0.0012491 225010 152.78 225020 152.78 832.070903646654 49.99 0.70599 49.99 49.628 50.334 0 69 23 5 0.881358523750677 0.00445003781997974 0.0527504385111904 1.1785E-07 2 11598 160.93 133.66 10 39032000 43567 33427 47401 34289 45192 46895 41568 44114 39025 29331 41240 31582 47476 35357 45938 46463 42417 45241 38614 28640 2 2 2 2 2 2 2 2 2 2 3513 1511 3095 3283 3894;3895 3895 2774;2775 QPDISCILGTGGKSPR 16 Phospho (STY) _QPDISCILGTGGKS(ph)PR_ QPDISCILGT(0.121)GGKS(0.879)PR QPDIS(-41.36)CILGT(-8.6)GGKS(8.6)PR 0 0 1 1 P57740 P57740 P57740 NUP107 Nuclear pore complex protein Nup107 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.057983398438 3 589.281604 1764.82298 36401.0787583667 1.7518 0.0010323 259260 152.78 259260 152.78 742.392731591411 76.045 1.541 76.045 75.572 77.113 0 176 52 5 0.947365958920758 0.00271532954623677 0.0256000771937586 0.010057 1 17776 73.711 44.327 3 51712000 12458 16288 11431 17123 7409.9 11888 7242.1 14117 18338 10390 11785 15391 11520 17446 7765.1 12197 7683.7 14387 17623 10110 1 1 1 1 1 1 1 1 1 1 3514 736 3096 3284 3896 3896 1220 QPEYSPESPR 10 Phospho (STY) _QPEYSPES(ph)PR_ QPEYS(0.103)PES(0.897)PR QPEY(-104.18)S(-9.4)PES(9.4)PR 0 0 1 0 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.844055175781 2 635.261 1268.50745 35787.9649896976 1.3879 0.00088167 180370 114.58 180370 114.58 749.84239761782 36.632 1.0068 36.632 36.176 37.183 0 108 34 4 0.815244636971056 0.00190906378286024 0.0618638017184052 6.9597E-07 1 8203 169.58 97.289 3 165920000 21396 34771 23053 31444 25898 23321 25021 24036 34406 3285.5 20252 32828 23151 32359 26110 23754 25769 24181 33550 3650 1 1 1 1 1 1 1 1 1 1 3515 1944 3097 3285 3897 3897 3533 QPGSPMYR 8 Phospho (STY) _QPGS(ph)PMYR_ QPGS(1)PMYR QPGS(34.16)PMY(-34.16)R 0 0 1 0 Q9P275 Q9P275 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.789428710938 2 508.206985 1014.39942 40492.2430772163 1.1435 0.00058113 225460 114.58 225460 114.58 622.788860939484 40.24 0.58926 40.24 39.979 40.568 0 36 19 2 0.966480964950832 0.000368859658613658 0.00730359578881913 0.024074 1 9149 63.073 32.907 2 14421000 17666 20900 21426 18375 18556 21499 17475 19058 19035 5010.3 16731 19729 21321 19071 18986 21389 17883 19362 18716 5158.9 1 1 1 1 1 1 1 1 1 1 3516 2103 3098 3286 3898 3898 3800 QPGVDSLSPVASLPK 15 Phospho (STY) _QPGVDSLS(ph)PVASLPK_ QPGVDS(0.022)LS(0.978)PVASLPK QPGVDS(-16.53)LS(16.53)PVAS(-49.8)LPK 0 0 1 0 Q9UBW7 Q9UBW7 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.709045410156 3 525.599039 1573.77529 38638.8785381927 2.3582 0.0012395 290670 152.78 290670 152.78 678.374873197711 79.351 0.5411 79.351 79.048 79.589 -1.4211E-14 51 18 4 0.986026340849763 0.00260773589204349 0.0632071426237003 0.00016578 1 18595 101.61 80.555 3 12254000 8078.1 5418.8 7285.7 5837 5963.4 8170 7114.3 7389.9 5996.6 5475.2 7641 5121.3 7367.8 6005.2 6144.9 8085.6 7155.8 7607.8 5964.3 5326.6 1 1 1 1 1 1 1 1 1 1 3517 2132 3099 3287 3899 3899 3835 QPLFVPTTSGPSTPPGLVLPHTEFQPAPK 29 Phospho (STY) _QPLFVPTTSGPS(ph)TPPGLVLPHTEFQPAPK_ QPLFVPTTS(0.003)GPS(0.593)T(0.404)PPGLVLPHTEFQPAPK QPLFVPT(-40.43)T(-35.34)S(-23.47)GPS(1.67)T(-1.67)PPGLVLPHT(-63.26)EFQPAPK 0 0 1 0 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.733520507813 4 780.900599 3119.57329 33563.4737679361 1.4301 0.0011168 146730 114.58 146730 114.58 895.732370982494 99.082 0.23066 99.082 98.977 99.207 0 14 7 3 0.538714714180055 0.00244655203775789 0.0628316502862634 6.6956E-05 1 23007 113.64 88.962 6 22053000 5919 7977.5 8965 8102.1 5571 6892.7 6559.6 6651.9 7860.4 28504 5612.3 7536.8 8812.4 8291.9 5869.1 7013.5 6665.2 7540.6 7700.6 26994 1 1 1 1 1 1 1 1 1 1 3518 1756 3100 3288 3900 3900 3234 QPLLLSEDEEDTKR 14 Phospho (STY) _QPLLLS(ph)EDEEDTKR_ QPLLLS(1)EDEEDTKR QPLLLS(98.31)EDEEDT(-98.31)KR 0 0 1 1 Q99613;B5ME19 Q99613 Q99613 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.716735839844 3 584.939901 1751.79787 36487.2485962018 1.9754 0.0011555 261180 152.78 261180 152.78 738.049490159724 64.96 3.6482 64.96 64.537 68.185 0 441 124 6 0.997346528258483 0.011547978776531 0.15864054142471 1.1131E-15 2 15211 216.35 185.93 2 333260000 75856 52528 82372 56484 53693 76724 54549 61051 59710 13983 71804 49643 82220 58079 56198 75831 55626 62267 58696 14579 2 2 2 2 2 2 2 2 2 2 3519 18 3101 3289 3901;3902 3901 35 QPLTSPGSVSPSR 13 Phospho (STY) _QPLTSPGSVS(ph)PSR_ QPLTSPGSVS(0.997)PS(0.003)R QPLT(-90.06)S(-79.39)PGS(-41.11)VS(24.91)PS(-24.91)R 0 0 1 0 Q08495 Q08495 Q08495 DMTN Dematin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.412414550781 2 696.829581 1391.64461 34786.7110270245 1.9401 0.0013519 164430 114.58 164440 114.58 811.411473517139 45.065 0.52706 45.065 44.767 45.294 0 31 17 2 0.979519827261037 0.00110157533277651 0.0367931953138421 4.392E-07 1 10365 160.99 102.67 5 14881000 8682.5 17835 10396 17127 15159 8659.2 15234 15275 19911 7748.4 8222.3 16844 10428 17493 15107 9155.1 15631 15299 19448 7649.6 1 1 1 1 1 1 1 1 1 1 3520 889 3102 3290 3903 3903 1449 QPSEEEIIK 9 Phospho (STY) _QPS(ph)EEEIIK_ QPS(1)EEEIIK QPS(134.68)EEEIIK 0 0 1 0 Q15121 Q15121 Q15121 PEA15 Astrocytic phosphoprotein PEA-15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.927185058594 2 576.762844 1151.51114 34607.8291950691 2.4971 0.0014402 397330 229.16 397330 229.16 805.925982984041 61.124 1.2313 61.124 60.747 61.978 0 101 41 3 0.995907609269303 0.0102823535381558 0.583539359421657 8.1474E-05 1 14290 134.68 101.6 1 292680000 120980 52722 115350 57615 57874 113130 62151 79132 55616 11112 114460 49832 115780 59751 62178 110510 62880 81028 55153 12295 1 1 1 1 1 1 1 1 1 1 3521 1060 3103 3291 3904 3904 1828 QPSGAGLCDISEGTVVPEDR 20 Phospho (STY) _QPS(ph)GAGLCDISEGTVVPEDR_ QPS(1)GAGLCDISEGTVVPEDR QPS(93.25)GAGLCDIS(-93.25)EGT(-137.48)VVPEDR 0 0 1 0 Q5T5C0 Q5T5C0 Q5T5C0 STXBP5 Syntaxin-binding protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.706726074219 3 722.983952 2165.93003 34540.9805636161 1.6793 0.0012141 105660 76.389 105660 76.39 799.373919845845 70.184 0.57219 70.184 69.904 70.476 0 59 19 4 0.992313468996323 0.00349228596564218 0.0457056354862091 9.0302E-09 1 16455 173.96 146.63 3 17965000 6228.3 5176 6343.1 5177.6 7282.4 5733.4 7703.9 9022.6 6519 18822 5894 4889.6 6392.8 5325 7339.6 5798.8 7789.3 9490 6482.6 17932 1 1 1 1 1 1 1 1 1 1 3522 1185 3104 3292 3905 3905 2075 QPSPSHDGSLSPLQDR 16 Phospho (STY) _QPS(ph)PSHDGSLSPLQDR_ QPS(0.977)PS(0.023)HDGSLSPLQDR QPS(16.28)PS(-16.28)HDGS(-74.48)LS(-107.6)PLQDR 0 0 1 0 Q96A00 Q96A00 Q96A00 PPP1R14A Protein phosphatase 1 regulatory subunit 14A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.326965332031 3 600.935262 1799.78396 36734.3124318209 0.99411 0.00059739 127120 76.389 127120 76.389 677.657996185842 47.619 0.59589 47.619 47.412 48.008 0 58 20 4 0.77711629515642 0.00165541024049109 0.0238711711934286 5.7528E-07 1 11104 140.73 122.81 4 66304000 10234 14078 10343 13449 14586 10620 15336 14285 12800 7235.4 9684.2 13295 10462 13802 14560 10831 15506 14405 12737 7143.6 1 1 1 1 1 1 1 1 1 1 3523 1641 3105 3293 3906 3906 3036 QPSSPYEDK 9 Phospho (STY) _QPSS(ph)PYEDK_ QPS(0.084)S(0.916)PYEDK QPS(-10.38)S(10.38)PY(-64.12)EDK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.888549804688 2 565.723719 1129.43288 36394.4526302498 2.2739 0.0012864 405080 229.16 405080 229.17 794.887160409511 41.17 0.53882 41.17 40.857 41.395 7.1054E-15 36 18 3 0.785058568407173 0.000474626036757363 0.0165765524339868 0.0014917 1 9397 99.732 66.323 3 9022200 18684 21503 18106 19492 14927 19433 16516 18517 22345 10272 17678 20302 18229 20136 15364 19489 16896 18919 21801 10101 1 1 1 1 1 1 1 1 1 1 3524 2226 3106 3294 3907 3907 4063 QPTPPFFGR 9 Phospho (STY) _QPT(ph)PPFFGR_ QPT(1)PPFFGR QPT(169.33)PPFFGR 0 0 1 0 Q96PK6 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.34033203125 2 563.757699 1125.50085 37907.3580101679 1.6108 0.00090808 203250 114.58 203250 114.58 678.339380097314 73.397 2.081 73.397 72.398 74.479 -1.4211E-14 268 71 5 0.996058001008351 0.0535001353550586 1 2.0031E-06 1 17237 169.33 136.72 1 544320000 188500 186740 186670 171360 179570 181740 178960 202110 218200 4154 178360 176320 187990 177050 182680 181970 183270 202060 213630 8588.9 1 1 1 1 1 1 1 1 1 1 3525 1723 3107 3295 3908 3908 4734 QPVELTPTDK 10 Phospho (STY) _QPVELT(ph)PTDK_ QPVELT(0.988)PT(0.012)DK QPVELT(19.07)PT(-19.07)DK 0 0 1 0 P05771 P05771 P05771 PRKCB Protein kinase C beta type MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.302001953125 3 403.191721 1206.55333 42421.6724450488 1.0492 0.00042305 378910 152.78 378920 152.78 555.966999281013 57.992 0.52931 57.992 57.732 58.262 0 30 17 2 0.978037636431693 0.00139421010861036 0.00954402401251758 0.010922 1 13571 79.466 62.722 2 16480000 4940.2 10921 6490.2 11646 4643.1 5828.1 5515.5 6711.5 11042 2433.3 4680.5 10321 6425.2 11820 4838.5 6117.1 5723.8 6771.2 10661 2446.6 1 1 1 1 1 1 1 1 1 1 3526 306 3108 3296 3909 3909 4364 QPVSEPPADQVASDMPHSPTLR 22 Phospho (STY) _QPVSEPPADQVASDMPHS(ph)PTLR_ QPVSEPPADQVASDMPHS(0.748)PT(0.252)LR QPVS(-75.73)EPPADQVAS(-39.11)DMPHS(4.72)PT(-4.72)LR 0 0 1 0 Q6W2J9 Q6W2J9 Q6W2J9 BCOR BCL-6 corepressor MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.094055175781 3 813.70519 2438.09374 NaN NaN NaN NaN NaN NaN NaN NaN 63.957 1 63.957 63.457 64.457 0 NaN NaN NaN 0.0072703 1 15019 95.108 83.257 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3527 1284 3109 3297 3910 3910 2286 QQAAYYAQTSPQGMPQHPPAPQGQ 24 Oxidation (M),Phospho (STY) _QQAAYYAQTS(ph)PQGM(ox)PQHPPAPQGQ_ QQAAYYAQTSPQGM(1)PQHPPAPQGQ QQAAYYAQT(0.139)S(0.861)PQGMPQHPPAPQGQ QQAAYYAQTSPQGM(103.16)PQHPPAPQGQ QQAAY(-59.64)Y(-52.33)AQT(-7.91)S(7.91)PQGMPQHPPAPQGQ 0 1 1 0 Q96AE4 Q96AE4 Q96AE4 FUBP1 Far upstream element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 969.777770996094 3 893.054881 2676.14281 31060.9039368616 1.4737 0.0013161 85534 76.387 85536 76.388 970.109065838392 44.546 0.59868 44.546 44.199 44.798 0 47 20 3 0.97442422528056 0.00204935108206323 0.0276835826057636 8.4123E-05 1 10235 103.16 89.146 4 19803000 4207.9 5672.7 3912 4672.9 4259.7 4197.9 5499.8 5177 5558.2 7128.5 3980.6 5353.1 3962.8 4851.3 4319.8 4254.6 5540.4 5369.7 5481.8 6832.2 1 1 1 1 1 1 1 1 1 1 3528 1646 3110 3298 3911 3911 194 3040 QQDLHLESPQRQPEYSPESPR 21 2 Phospho (STY) _QQDLHLES(ph)PQRQPEYSPES(ph)PR_ QQDLHLES(1)PQRQPEYSPES(1)PR QQDLHLES(48.88)PQRQPEY(-91.66)S(-36.59)PES(36.59)PR 0 0 2 1 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 971.106811523438 3 894.384606 2680.13199 32018.319445805 0.89066 0.0007966 85408 76.388 85409 76.389 971.106550115595 51.77 0.90738 51.77 51.165 52.072 0 43 30 2 0.224095463270881 0.000186293396383741 0.00115424881696107 2.9829E-11 1 12048 179.66 164.02 6 27528000 7101.6 5951.8 6441 6405.3 4269.3 6426.5 4714.9 7121 5624.2 6208.3 6717.4 5625.1 6498 6549.4 4467.9 6461.1 4802.9 7303 5510.8 6010.6 1 1 1 1 1 1 1 1 1 1 3529 1944 3111 3299 3912 3912 3532;3533 QQDSQPEEVMDVLEMVENVK 20 Oxidation (M),Phospho (STY) _QQDS(ph)QPEEVMDVLEM(ox)VENVK_ QQDSQPEEVMDVLEM(1)VENVK QQDS(1)QPEEVMDVLEMVENVK QQDSQPEEVM(-59.29)DVLEM(59.29)VENVK QQDS(130.29)QPEEVMDVLEMVENVK 0 1 1 0 Q9H307 Q9H307 Q9H307 PNN Pinin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 968.45849609375 3 815.018334 2442.03317 32173.0086321441 0.88028 0.00071744 187450 152.77 187450 152.78 968.128667446465 101.49 0.31169 101.49 101.3 101.61 0 38 10 7 0.989822358822519 0.00322286805932129 0.0554455104054081 1.644E-05 1 23831 130.29 109.67 2 41671000 5473.6 8522.7 7234.6 5990.2 7487.4 6089.4 10415 11113 10196 116150 5186 8036.7 7192.2 6306.7 7624.5 6381 10455 14453 10069 109630 1 1 1 1 1 1 1 1 1 1 3530 1926 3112 3300 3913 3913 208 3496 QQDSQPEEVMDVLEMVENVK 20 Phospho (STY) _QQDS(ph)QPEEVMDVLEMVENVK_ QQDS(1)QPEEVMDVLEMVENVK QQDS(166.79)QPEEVMDVLEMVENVK 0 0 1 0 Q9H307 Q9H307 Q9H307 PNN Pinin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 962.796264648438 3 809.686696 2426.03826 31918.2381935918 1.4947 0.0012103 188680 152.77 188690 152.78 962.796997824787 102.67 0.43287 102.67 102.48 102.92 0 30 14 4 0.958925027637581 0.000390162200955409 0.00527835406765834 4.0249E-08 1 24212 166.79 144.35 1 25570000 4001.3 3888.7 2769.7 5160.6 5489.8 4636.9 4958.9 5812.9 3566.6 67732 3781.6 3680.8 2892 5212.7 5401.6 4813.5 5035.1 7826 3578.2 63912 1 1 1 1 1 1 1 1 1 1 3531 1926 3112 3301 3914 3914 3496 QQGHEPVSPR 10 Phospho (STY) _QQGHEPVS(ph)PR_ QQGHEPVS(1)PR QQGHEPVS(79.34)PR 0 0 1 0 Q9BTA9 Q9BTA9 Q9BTA9 WAC WW domain-containing adapter protein with coiled-coil MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 481.902221679688 3 405.51531 1213.5241 43928.8866689198 0.76477 0.00031013 188370 76.387 188370 76.388 481.902417013882 24.875 0.34883 24.875 24.656 25.005 0 31 11 3 0.659490834780541 0.00412574475479765 0.0399440618963712 0.0069784 1 5554 79.337 47.811 1 13164000 9395.8 7670.7 8495.6 7406.1 8860.7 9165.3 7147.6 7700.9 8801.6 4924.5 8887.5 7244.7 8607.6 7648.8 8947.7 9099.2 7403.2 7929.7 8614.4 4815.3 1 1 1 1 1 1 1 1 1 1 3532 1821 3113 3302 3915 3915 3335 QQLSAEELDAQLDAYNAR 18 Phospho (STY) _QQLS(ph)AEELDAQLDAYNAR_ QQLS(1)AEELDAQLDAYNAR QQLS(142.94)AEELDAQLDAY(-142.94)NAR 0 0 1 0 Q86V81 Q86V81 Q86V81 ALYREF THO complex subunit 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.038635253906 3 705.651191 2113.93174 36146.8391609435 1.6104 0.0011364 108250 76.387 108250 76.389 782.371877994478 79.075 0.38836 79.075 78.805 79.193 -1.4211E-14 24 12 3 0.9942728703842 0.0003871972656296 0.00957568973313552 4.745E-08 2 18519 169.08 151.26 2 14018000 11433 11392 11955 11719 10163 12117 11044 12623 11550 24363 10821 10764 11987 12019 10432 12180 11213 13376 11375 23233 2 2 2 2 2 2 2 2 2 2 3533 1377 3114 3303 3916;3917 3916 2493 QQLSPDRQPQSSGPDR 16 Phospho (STY) _QQLS(ph)PDRQPQSSGPDR_ QQLS(0.999)PDRQPQSSGPDR QQLS(34.67)PDRQPQS(-34.67)S(-34.67)GPDR 0 0 1 1 Q9H1H9 Q9H1H9 Q9H1H9 KIF13A Kinesin-like protein KIF13A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.673034667969 3 625.949682 1874.82722 37154.0345903796 1.8414 0.0011526 122040 76.389 122040 76.39 702.672493353916 29.874 0.32338 29.874 29.693 30.016 3.5527E-15 16 10 3 0.263242381511892 0.000285542766519483 0.00912755640077321 0.046889 1 6684 42.123 30.853 3 6248500 6752.3 12174 7063.1 11284 8336.7 9509.1 8496.9 10890 13074 4150 6390.6 11495 7110.2 11612 8391.5 9635.8 8766.8 10995 12706 4159.8 1 1 1 1 1 1 1 1 1 1 3534 1914 3115 3304 3918 3918 3477 QQLVELVAEQADLEQTFNPSDPDCVDR 27 Unmodified _QQLVELVAEQADLEQTFNPSDPDCVDR_ 0 0 0 0 Q9BZZ5 Q9BZZ5 Q9BZZ5 API5 Apoptosis inhibitor 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.409912109375 4 779.867382 3115.44042 34273.2172598694 1.8778 0.0014645 73462 57.291 73464 57.292 837.40921452851 100.41 0.19462 100.41 100.34 100.53 0 16 6 4 0.881952818212162 0.00122550639328137 0.0146197497762614 0.0037748 1 23477 90.616 77.161 1 63879000 7067.3 7167.3 5647.4 6220.2 7778.1 8467.8 7726.2 8235.9 7172 50341 6682.1 6765.3 5794.2 6480.6 7766.2 8479.3 7851.9 9787.1 7100.1 47593 1 1 1 1 1 1 1 1 1 1 3535 1880 3116 3305 3919 3919 QQNLPTVTSPGNLMVVQPDR 20 Oxidation (M),Phospho (STY) _QQNLPTVTS(ph)PGNLM(ox)VVQPDR_ QQNLPTVTSPGNLM(1)VVQPDR QQNLPT(0.001)VT(0.316)S(0.683)PGNLMVVQPDR QQNLPTVTSPGNLM(81.55)VVQPDR QQNLPT(-28.06)VT(-3.35)S(3.35)PGNLMVVQPDR 0 1 1 0 Q6ZUJ8 Q6ZUJ8 Q6ZUJ8 PIK3AP1 Phosphoinositide 3-kinase adapter protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.422546386719 3 764.034759 2289.08245 33937.9968841117 1.5938 0.0012177 99975 76.384 99976 76.386 840.753482319257 73.407 1.1807 73.407 72.604 73.785 0 147 40 7 0.987573058395166 0.0012365414351082 0.0360449437737797 0.0078059 1 17092 81.553 53.351 3 199310000 6222.6 4243.1 6726.8 4020.4 4932.8 6469.1 4554.4 4885.9 5143.4 12620 5890 4007 6721.8 4181 5107 6378.9 4670.3 5342.5 5050 11996 1 1 1 1 1 1 1 1 1 1 3536 1303 3117 3306 3920 3920 162 2325 QQNLPTVTSPGNLMVVQPDR 20 Phospho (STY) _QQNLPTVTS(ph)PGNLMVVQPDR_ QQNLPT(0.07)VT(0.204)S(0.726)PGNLMVVQPDR QQNLPT(-10.17)VT(-5.5)S(5.5)PGNLMVVQPDR 0 0 1 0 Q6ZUJ8 Q6ZUJ8 Q6ZUJ8 PIK3AP1 Phosphoinositide 3-kinase adapter protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.425476074219 3 758.70312 2273.08753 34811.6097303922 1.5841 0.0012019 100680 76.388 100680 76.389 835.424681629402 83.157 0.46827 83.157 82.914 83.382 0 52 15 4 0.866415932099802 0.00659279922821069 0.0325825391309737 0.0018168 1 19442 96.679 75.145 3 32481000 11258 12591 11421 12402 10044 12986 10498 13557 13892 20035 10654 11893 11475 12755 10283 13035 10757 14180 13563 19180 1 1 1 1 1 1 1 1 1 1 3537 1303 3117 3307 3921 3921 2325 QQPPEPEWIGDGESTSPSDK 20 Unmodified _QQPPEPEWIGDGESTSPSDK_ 0 0 0 0 Q8NE71 Q8NE71 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.77392578125 3 728.662434 2182.96547 33129.6444432102 2.1859 0.0015928 209670 152.78 209670 152.78 881.772213241739 66.388 0.46431 66.388 66.14 66.604 0 24 15 2 0.658490824099064 0.00133960305136592 0.0200407418931479 1.2285E-07 1 15581 150.91 133.83 1 24183000 8233.1 9209.9 8248 8783.1 7554.8 8328.4 8054.3 9603.5 10609 25447 7790.7 8697.9 8296.9 9036.9 7717 8432.1 8244.5 10350 10360 24183 1 1 1 1 1 1 1 1 1 1 3538 1514 3118 3308 3922 3922 QQSLETCEK 9 Phospho (STY) _QQSLET(ph)CEK_ QQS(0.08)LET(0.92)CEK QQS(-10.6)LET(10.6)CEK 0 0 1 0 Q6P4F7 Q6P4F7 Q6P4F7 ARHGAP11A Rho GTPase-activating protein 11A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.904174804688 2 601.741586 1201.46862 34113.7901167678 2.2963 0.0013818 380830 229.16 380830 229.16 830.903254004265 41.241 0.79843 41.241 40.857 41.655 0 50 27 3 0.993683915423572 0.00161788198460492 0.0348085477251795 9.2351E-06 1 9413 145.09 100.47 2 18359000 46364 27875 47335 25894 17764 48572 17710 27957 32509 6915.6 43875 26321 47246 27073 19786 47429 18435 29050 31449 7158.8 1 1 1 1 1 1 1 1 1 1 3539 1260 3119 3309 3923 3923 4625 QQSLPLRPIIPLVAR 15 Phospho (STY) _QQS(ph)LPLRPIIPLVAR_ QQS(1)LPLRPIIPLVAR QQS(81.72)LPLRPIIPLVAR 0 0 1 1 Q9NU19 Q9NU19 Q9NU19 TBC1D22B TBC1 domain family member 22B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.067932128906 3 594.344756 1780.01244 38664.3414312681 1.8091 0.0010752 128520 76.387 128530 76.389 671.066617964195 96.879 0.72179 96.879 96.433 97.155 0 84 24 4 0.967484249556614 0.00414316790887601 0.0235497889312533 0.0071801 1 22470 81.723 68.767 1 25289000 4676.7 3562.5 4123.4 4412.4 2987 4233.6 3179 3979.1 4110.5 6855.9 4423.3 3370.2 4170.3 4475.8 3101.9 4261.2 3252.3 4207.8 4016.3 6547.7 1 1 1 1 1 1 1 1 1 1 3540 2035 3120 3310 3924 3924 3697 QQTEKPESEDEWER 14 Phospho (STY) _QQTEKPES(ph)EDEWER_ QQTEKPES(1)EDEWER QQT(-35.26)EKPES(35.26)EDEWER 0 0 1 1 O60231 O60231 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.030639648438 3 624.254549 1869.74182 34946.210870039 1.6603 0.0010364 244730 152.78 244730 152.78 777.029960594246 45.65 0.99832 45.65 45.466 46.464 0 123 33 5 0.769733191236044 0.0064624326641567 0.0614841571664702 3.1831E-07 1 10524 162.43 136.61 2 85120000 66057 82138 67635 77617 49050 70314 51506 66803 78735 8630.2 62513 77567 67791 79853 50934 70778 53056 67404 76533 9672.4 1 1 1 1 1 1 1 1 1 1 3541 135 3121 3311 3925 3925 231 QQVAFYGQTLGQAQAHSQEQ 20 Phospho (STY) _QQVAFYGQTLGQAQAHS(ph)QEQ_ QQVAFYGQTLGQAQAHS(1)QEQ QQVAFY(-148.66)GQT(-105.85)LGQAQAHS(105.85)QEQ 0 0 1 0 Q96I24 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.733154296875 3 767.009489 2298.00664 32750.6007168701 1.8007 0.0013812 99594 76.389 99596 76.391 843.401631091876 67.191 1.1315 67.191 66.573 67.705 -1.4211E-14 91 38 4 0.803604284910641 0.00522572248481945 0.0838014028523405 4.3655E-11 1 15768 179.43 166.95 3 24266000 7462.3 8501.2 7596.1 7780.8 8371.5 7839.3 10607 11390 8308.1 21736 7061.7 8026.7 7654.9 8034 8479.1 7940.6 10627 11942 8295.1 20730 1 1 1 1 1 1 1 1 1 1 3542 1690 3122 3312 3926 3926 3106 QQVSWEQEFLVGSSPGGSGR 20 Phospho (STY) _QQVSWEQEFLVGSS(ph)PGGSGR_ QQVSWEQEFLVGS(0.012)S(0.972)PGGS(0.015)GR QQVS(-160.65)WEQEFLVGS(-18.94)S(18.04)PGGS(-18.04)GR 0 0 1 0 Q9BUA3 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.387573242188 3 738.998702 2213.97428 34551.2807783423 2.0505 0.0015153 103370 76.387 103370 76.388 815.72049764233 90.262 0.66209 90.262 89.927 90.589 0 85 22 5 0.973126617629864 0.00469265986712409 0.215788108556489 1.825E-11 1 21002 199.17 188.54 4 45044000 4196 5793.3 4835.6 6236.8 4955 4815.6 4045 5402.7 5626.3 20617 3972.9 5475.3 4832.1 6353.8 5009.9 4936.6 4204.5 6017.8 5484.4 19539 1 1 1 1 1 1 1 1 1 1 3543 1832 3123 3313 3927 3927 3353 QRIDEFESM 9 Oxidation (M),Phospho (STY) _QRIDEFES(ph)M(ox)_ QRIDEFESM(1) QRIDEFES(1)M QRIDEFESM(83.87) QRIDEFES(83.87)M 0 1 1 1 P26038 P26038 P26038 MSN Moesin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.323791503906 2 625.741586 1249.46862 37467.3350997585 1.5262 0.000955 183110 114.58 183110 114.58 740.322102809013 50.187 0.52212 50.187 49.982 50.504 -7.1054E-15 39 17 3 0.987189364161833 0.000422707277753053 0.00458738096423908 0.0068731 1 11667 83.869 63.112 1 16009000 12420 10894 12873 12090 24664 12957 24891 16128 11445 10650 11754 10298 13081 12355 24324 13008 24958 16375 11863 10401 1 1 1 1 1 1 1 1 1 1 3544 478 3124 3314 3928 3928 65 790 QRIDEFESM 9 Phospho (STY) _QRIDEFES(ph)M_ QRIDEFES(1)M QRIDEFES(112.85)M 0 0 1 1 P26038 P26038 P26038 MSN Moesin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.326477050781 2 617.744128 1233.4737 36110.0058815628 1.8865 0.0011654 185480 114.58 185490 114.58 732.325647215249 66.895 0.75283 66.895 66.604 67.357 0 81 25 4 0.778873002230808 0.00406632768244552 0.19124348537537 0.00043156 1 15700 112.85 94.268 1 31455000 23874 14657 21143 13526 47480 25034 49855 28204 16015 12176 22581 13839 21773 14142 46629 24642 49708 28534 17237 12118 1 1 1 1 1 1 1 1 1 1 3545 478 3124 3315 3929 3929 790 QRPDLGSAQK 10 Phospho (STY) _QRPDLGS(ph)AQK_ QRPDLGS(1)AQK QRPDLGS(67.25)AQK 0 0 1 1 P33991 P33991 P33991 MCM4 DNA replication licensing factor MCM4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.946044921875 2 590.279527 1178.5445 35016.2966616638 2.1682 0.0012798 388230 229.16 388230 229.16 819.442087634223 37.656 0.38377 37.656 37.568 37.952 0 22 12 2 0.923804731986993 0.000358634953125803 0.00999314708569224 0.016105 1 8535 67.252 42.908 1 10252000 16397 13478 17111 14930 17344 17248 14712 14756 16726 4175.8 15519 12741 17187 15278 17552 17162 15157 15023 16419 4273.5 1 1 1 1 1 1 1 1 1 1 3546 535 3125 3316 3930 3930 870 QRSLGPSLATDK 12 Phospho (STY) _QRS(ph)LGPSLATDK_ QRS(1)LGPSLATDK QRS(58.61)LGPS(-58.61)LAT(-98.76)DK 0 0 1 1 Q9H3N1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 604.334228515625 3 451.557175 1351.64969 41054.8535690551 1.146 0.00051748 338330 152.78 338330 152.78 604.332421444144 52.726 0.49268 52.726 52.378 52.87 0 46 16 4 0.837299760574766 0.00148142475556434 0.0162754731474528 6.5713E-05 1 12279 122.44 76.032 3 11871000 18209 10765 16829 10738 12139 17639 10078 14962 11702 2781.8 17225 10169 16964 11138 12568 17344 10402 15196 11477 2965.7 1 1 1 1 1 1 1 1 1 1 3547 1931 3126 3317 3931 3931 3503 QRSLGPSLATDKS 13 Phospho (STY) _QRS(ph)LGPSLATDKS_ QRS(1)LGPSLATDKS QRS(43.75)LGPS(-43.75)LAT(-111.6)DKS(-123.78) 0 0 1 2 Q9H3N1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.343872070313 3 480.567851 1438.68172 39448.7110191312 1.9606 0.00094219 317910 152.78 317910 152.78 633.342775746628 51.037 0.57957 51.037 50.732 51.312 0 61 19 4 0.836297497278865 0.00373669454322235 0.0173411371191647 8.9295E-07 1 11856 144.23 106.8 4 38219000 33464 12446 32794 12355 17101 30680 19139 23012 12999 3807.9 31663 11757 32872 12986 18304 29845 19216 23495 13087 4118.2 1 1 1 1 1 1 1 1 1 1 3548 1931 3127 3318 3932 3932 3503 QRSPIALPVK 10 Phospho (STY) _QRS(ph)PIALPVK_ QRS(1)PIALPVK QRS(127.42)PIALPVK 0 0 1 1 Q8TF01 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.663513183594 3 396.888196 1187.64276 41990.8727584237 2.1809 0.00086556 384930 152.77 384930 152.78 549.663415389612 63.002 0.87636 63.002 62.615 63.491 0 127 29 6 0.979940786790426 0.013496974485279 0.108953983628204 8.1928E-05 2 14757 127.42 93.045 1 349130000 31423 42435 33924 42269 30178 29648 31641 35499 46926 3479.8 29744 40086 33973 43208 30881 30361 32556 35486 45654 4098.3 2 2 2 2 2 2 2 2 2 2 3549 1556 3128 3319 3933;3934 3933 2858 QRSPSPAPAPAPAAAAGPPTR 21 2 Phospho (STY) _QRS(ph)PS(ph)PAPAPAPAAAAGPPTR_ QRS(1)PS(1)PAPAPAPAAAAGPPTR QRS(54.5)PS(47.36)PAPAPAPAAAAGPPT(-47.36)R 0 0 2 1 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.384521484375 3 709.996066 2126.96637 35094.7642969716 1.526 0.0010834 107590 76.388 107590 76.389 786.717674818531 37.594 1.2429 37.594 37.396 38.638 0 100 43 3 0.961229484985792 0.00110838876745156 0.00481468061640226 0.014535 1 8505 67.571 57.472 3 28577000 12505 12978 13219 12757 11792 13349 12133 11886 14159 12124 11835 12259 13252 13122 12058 13358 12390 12344 13885 11691 1 1 1 1 1 1 1 1 1 1 3550 1953 3129 3320 3935 3935 3556;3557 QRSSDYQFPSSPFTDTLK 18 Phospho (STY) _QRS(ph)SDYQFPSSPFTDTLK_ QRS(0.749)S(0.25)DYQFPSSPFTDTLK QRS(4.77)S(-4.77)DY(-35.99)QFPS(-36.81)S(-56.41)PFT(-76.41)DT(-83.84)LK 0 0 1 1 Q9UK61 Q9UK61 Q9UK61 FAM208A Protein FAM208A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.436706542969 3 728.659686 2182.95723 33795.1387514396 1.5365 0.0011195 209660 152.77 209670 152.77 881.76763003703 86.21 0.60323 86.21 85.957 86.561 0 44 20 3 0.971574710841791 0.0029108108021009 0.124679417319902 6.7815E-05 1 20104 101.92 80.717 7 13711000 5738.9 5827 6862.4 4706.4 6543 6943.5 8628.1 7168.8 4863.6 16516 5434.7 5498.2 6845.5 4936.7 6684.7 6893.9 8579.4 7679.8 4958.6 15718 1 1 1 1 1 1 1 1 1 1 3551 2167 3130 3321 3936 3936 3902;3903;3904 QRSSPVTK 8 Phospho (STY) _QRSS(ph)PVTK_ QRS(0.279)S(0.721)PVTK QRS(-4.11)S(4.11)PVT(-42.21)K 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.938110351563 3 328.162096 981.46446 44959.9711991778 1.1273 0.00036995 465550 152.78 465550 152.78 480.937342148734 27.665 0.79893 27.665 27.437 28.236 0 68 27 4 0.962606719711481 0.00667356856467023 0.0703821736642853 0.0055963 1 6141 87.026 53.159 3 87237000 23018 24685 25502 23925 26071 23124 28075 23889 25280 2146.3 21791 23315 25547 24599 26449 23227 28405 23998 25062 2573.9 1 1 1 1 1 1 1 1 1 1 3552 1436 3131 3322 3937 3937 2642 QRSVHEK 7 Phospho (STY) _QRS(ph)VHEK_ QRS(1)VHEK QRS(74.94)VHEK 0 0 1 1 Q9UER7 Q9UER7 Q9UER7 DAXX Death domain-associated protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 474.594635009766 3 321.818441 962.433494 45548.8638084974 1.1488 0.00036971 474720 152.78 474730 152.78 474.593722371726 22.938 0.72184 22.938 22.776 23.498 0 53 24 4 0.932265590365198 0.00770885535380068 0.055101321795606 0.010512 1 5142 74.944 29.807 1 24129000 9065.1 8931.1 10006 8682.8 6303.9 9410 9125.9 8759.1 9613.9 4231.3 8581.5 8435.4 9981.5 8942 6656.2 9399.4 9167.2 8938.7 9465.3 4186.9 1 1 1 1 1 1 1 1 1 1 3553 2135 3132 3323 3938 3938 3841 QSDSVKGK 8 Phospho (STY) _QSDS(ph)VKGK_ QS(0.039)DS(0.961)VKGK QS(-13.89)DS(13.89)VKGK 0 0 1 1 P84101 P84101 P84101 SERF2 Small EDRK-rich factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 539.306762695313 3 310.142702 927.406276 43250.6847967697 1.4168 0.0004394 738900 229.16 738900 229.16 539.305854985611 33.853 0.60631 33.853 33.556 34.162 0 64 20 4 0.604611604550328 0.00551357352157427 0.150798008780875 0.011966 1 7550 67.456 44.736 2 102620000 40224 25502 37884 27473 22558 33448 23832 27954 27116 2724.3 38054 24102 38096 28184 23818 33196 24287 28335 26616 3212.2 1 1 1 1 1 1 1 1 1 1 3554 813 3133 3324 3939 3939 1298 QSFCAQEAPTASQGLLK 17 Phospho (STY) _QS(ph)FCAQEAPTASQGLLK_ QS(0.996)FCAQEAPT(0.002)AS(0.002)QGLLK QS(26.11)FCAQEAPT(-27.52)AS(-26.11)QGLLK 0 0 1 0 Q66K14 Q66K14 Q66K14 TBC1D9B TBC1 domain family member 9B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.406921386719 3 639.292169 1914.85468 35318.4798650246 2.1846 0.0013966 238980 152.78 238980 152.78 792.405399075973 74.707 0.4398 74.707 74.449 74.889 -1.4211E-14 18 14 2 0.233953951801364 0.000503590168159538 0.0284352968734627 0.034725 1 17552 50.397 30.291 3 9931100 6877.9 8157 6615.8 8511.1 7706.5 6870.7 7879.4 8168.7 8701.2 12138 6507.2 7707.6 6690.5 8691 7759.4 6999.2 8034.7 8509.3 8550.6 11619 1 1 1 1 1 1 1 1 1 1 3555 1223 3134 3325 3940 3940 2155 QSFDDNDSEELEDKDSK 17 Phospho (STY) _QSFDDNDS(ph)EELEDKDSK_ QSFDDNDS(1)EELEDKDSK QS(-80.52)FDDNDS(80.13)EELEDKDS(-80.13)K 0 0 1 1 O60841 O60841 O60841 EIF5B Eukaryotic translation initiation factor 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.431518554688 3 694.267071 2079.77938 32435.0513918337 2.1077 0.0014633 330080 229.16 330080 229.16 923.763025295081 57.339 0.7442 57.339 57.131 57.875 0 74 25 4 0.895053282410779 0.0018281442584992 0.0297072279240259 7.8115E-11 1 13401 189.09 166.63 3 21630000 13123 20333 13624 21241 13077 13231 12102 18212 24307 12909 12420 19213 13681 21626 13301 13706 12699 18464 23466 12577 1 1 1 1 1 1 1 1 1 1 3556 160 3135 3326 3941 3941 276 QSGEAFVELGSEDDVK 16 Unmodified _QSGEAFVELGSEDDVK_ 0 0 0 0 P52597 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.376586914063 3 570.600335 1708.77917 37008.6177744462 2.454 0.0014002 267740 152.78 267750 152.78 723.709658051028 73.849 0.66146 73.849 73.556 74.218 0 80 22 5 0.949824557797175 0.00230730130967638 0.0484575057184603 4.5558E-05 1 17304 127.32 104.09 1 73412000 14569 12575 14897 13792 16930 14953 15537 15541 14210 10275 13787 11886 15004 14105 17040 14963 15846 15876 14077 10035 1 1 1 1 1 1 1 1 1 1 3557 694 3136 3327 3942 3942 QSGEAFVELGSEDDVK 16 Unmodified _QSGEAFVELGSEDDVK_ 0 0 0 0 P52597 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1085.06494140625 2 855.396864 1708.77917 30721.2770045593 2.116 0.00181 267900 229.16 267910 229.17 1085.06270896255 73.806 0.5402 73.806 73.501 74.041 0 37 18 3 0.710665914512037 0.00120443659457063 0.0490984528169845 0.0014568 1 17313 123.29 95.67 1 16018000 5950.4 5682 6058.2 6470.2 5964.3 5518.7 6068.2 6579.9 6892 19824 5631 5372.1 6093.1 6580 6060.4 5624.8 6194.5 7156.3 6765.4 18819 1 1 1 1 1 1 1 1 1 1 3558 694 3136 3327 3943 3943 QSGLSSLVNGKSPIR 15 Phospho (STY) _QSGLSSLVNGKS(ph)PIR_ QSGLSSLVNGKS(1)PIR QS(-52.75)GLS(-44.5)S(-40.62)LVNGKS(40.62)PIR 0 0 1 1 Q9UPN9 Q9UPN9 Q9UPN9 TRIM33 E3 ubiquitin-protein ligase TRIM33 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.724548339844 3 541.613571 1621.81888 36918.4872568441 2.5151 0.0013622 282070 152.78 282080 152.78 694.388640078568 68.484 0.51765 68.484 68.214 68.732 0 63 17 5 0.97838168023387 0.00388847016371895 0.0230647443918919 0.0080313 1 16105 79.341 57.5 4 42624000 12269 17154 12696 17895 13594 13978 12430 16069 20894 7031.2 11611 16209 12768 18266 13734 14225 12940 16249 20258 6992.6 1 1 1 1 1 1 1 1 1 1 3559 2215 3137 3328 3944 3944 4009 QSHSESPSLQSK 12 Phospho (STY) _QSHSES(ph)PSLQSK_ QSHSES(1)PSLQSK QS(-52.04)HS(-33.43)ES(33.43)PS(-52.39)LQS(-143.17)K 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.312805175781 3 465.536439 1393.58749 39897.5014211313 0.83291 0.00038775 328170 152.78 328170 152.78 618.312067200748 34.124 0.87564 34.124 33.703 34.579 0 116 29 6 0.992775188850413 0.00771327870163535 0.0732383388139646 4.1136E-12 1 7592 211.43 171.65 5 386360000 26637 30793 31534 30705 22931 34671 29077 32949 35016 3397.6 25224 29088 31378 31596 23871 34560 29466 33219 34298 3961.8 1 1 1 1 1 1 1 1 1 1 3560 2226 3138 3329 3945 3945 4064 QSHSGSISPYPK 12 Phospho (STY) _QSHSGSIS(ph)PYPK_ QSHSGS(0.007)IS(0.993)PYPK QS(-63.45)HS(-43.3)GS(-21.52)IS(21.52)PY(-78.13)PK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.314453125 3 456.537891 1366.59185 40005.2862125168 1.8777 0.00085722 334640 152.78 334640 152.78 609.313473680742 42.146 0.68429 42.146 41.798 42.482 0 77 23 5 0.924955364120475 0.00656158246508382 0.0855626102850102 2.0032E-05 2 9603 133.86 86.569 5 93139000 35601 38648 36634 38286 20314 41741 24038 35563 39927 15026 33692 36508 36636 39389 21646 41636 24725 36365 38722 14972 2 2 2 2 2 2 2 2 2 2 3561 2226 3139 3330 3946;3947 3946 4065 QSLSPMSQRPVLK 13 Phospho (STY) _QSLS(ph)PMSQRPVLK_ QSLS(0.99)PMS(0.01)QRPVLK QS(-41.72)LS(20.03)PMS(-20.03)QRPVLK 0 0 1 1 Q9NSV4 Q9NSV4 Q9NSV4 DIAPH3 Protein diaphanous homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.373474121094 3 517.596864 1549.76876 38102.2070926891 1.47 0.00076086 295160 152.78 295160 152.78 670.372661230077 62.464 0.43746 62.464 62.237 62.674 0 47 14 4 0.923229370078515 0.00489736089042342 0.0748314687966244 5.6387E-07 2 14689 143.39 112.82 3 41046000 40921 63557 46204 58645 27632 43996 22801 44815 66378 10008 38741 60012 45984 60279 29110 44783 24635 45222 63647 10461 2 2 2 2 2 2 2 2 2 2 3562 2030 3140 3331 3948;3949 3949 3690 QSMDMSPIK 9 Phospho (STY) _QSMDMS(ph)PIK_ QSMDMS(1)PIK QS(-46.77)MDMS(46.77)PIK 0 0 1 0 Q14562 Q14562 Q14562 DHX8 ATP-dependent RNA helicase DHX8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 525.596618652344 3 372.820354 1115.43923 44013.0555568429 1.2949 0.00048276 409780 152.78 409780 152.78 525.595746307409 64.811 0.54529 64.811 64.593 65.138 0 49 18 4 0.855991493730015 0.00121521079764642 0.0153589857168928 0.0056906 2 15242 83.617 58.4 2 9525300 14040 13645 13603 14049 12202 14948 13142 14342 14590 4395 13284 12892 13707 14415 12480 14944 13372 14542 14335 4470.3 2 2 2 2 2 2 2 2 2 2 3563 1010 3141 3332 3950;3951 3950 1717 QSNASSDVEVEEK 13 Phospho (STY) _QSNASS(ph)DVEVEEK_ QSNAS(0.397)S(0.603)DVEVEEK QS(-50.58)NAS(-1.81)S(1.81)DVEVEEK 0 0 1 0 O75475 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 980.968566894531 2 751.306333 1500.59811 31155.9302826289 1.7826 0.0013393 305020 229.16 305020 229.16 980.469686866608 43.994 1.0425 43.994 43.609 44.652 0 84 35 4 0.71495518078047 0.00179565899366808 0.0613878696909349 1.2972E-10 1 10067 193.32 138.98 3 35746000 19650 17172 19224 19849 27060 21518 28399 22358 21648 4078 18592 16237 19480 20244 27010 21513 28659 22517 21647 4357.3 1 1 1 1 1 1 1 1 1 1 3564 188 3142 3333 3952 3952 327 QSPASPPPLGGGAPVR 16 Phospho (STY) _QSPAS(ph)PPPLGGGAPVR_ QS(0.265)PAS(0.735)PPPLGGGAPVR QS(-4.44)PAS(4.44)PPPLGGGAPVR 0 0 1 0 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 898.969421386719 2 784.385055 1566.75556 33407.5615094624 1.5949 0.001251 146080 114.58 146080 114.58 898.966585164198 54.223 0.78659 54.223 53.714 54.5 0 74 26 4 0.830503840573787 0.0011109730729927 0.0296847148331252 2.0411E-05 1 12591 135.39 93.509 2 32082000 20742 7359.8 19113 8101.5 8266 19192 9323.4 12003 9172.7 8499.3 19621 6956.7 19208 8451.3 9043.6 18668 9435.5 12574 9057.1 8280.9 1 1 1 1 1 1 1 1 1 1 3565 994 3143 3334 3953 3953 1693 QSPGPALAR 9 Phospho (STY) _QS(ph)PGPALAR_ QS(1)PGPALAR QS(95.48)PGPALAR 0 0 1 0 P85037 P85037 P85037 FOXK1 Forkhead box protein K1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.316284179688 2 488.734224 975.453895 42067.9160493311 0.82524 0.00040332 234440 114.58 234440 114.58 603.315530625265 37.414 0.33547 37.414 37.293 37.628 0 21 14 2 0.867896391599945 0.00052631365347413 0.00215695896920561 0.003609 2 8445 95.477 41.702 1 28757000 33857 28104 35299 30917 22891 31823 22439 27621 29270 6218.2 32043 26564 35309 31587 23962 31817 23050 28056 28591 6494.4 2 2 2 2 2 2 2 2 2 2 3566 816 3144 3335 3954;3955 3954 1307 QSPSPSTRPIR 11 Phospho (STY) _QS(ph)PSPSTRPIR_ QS(0.955)PS(0.045)PSTRPIR QS(13.25)PS(-13.25)PS(-40.43)T(-40.43)RPIR 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 512.26904296875 3 435.881881 1304.62381 44732.5193779524 1.1624 0.00050667 175250 76.387 175250 76.387 512.268916004104 28.729 0.52163 28.729 28.435 28.957 0 29 17 2 0.56209219458926 0.00155369028438133 0.0203318512080481 0.010254 1 6379 68.972 42.44 4 8599600 10101 10781 10044 11415 10775 9561 11576 12851 11124 2168 9557.6 10188 10128 11652 10902 9711.5 11733 12828 10996 2338.9 1 1 1 1 1 1 1 1 1 1 3567 1436 3145 3336 3956 3956 2643;2644 QSSFEPEFVISPR 13 Phospho (STY) _QSS(ph)FEPEFVISPR_ QS(0.042)S(0.958)FEPEFVISPR QS(-13.58)S(13.58)FEPEFVIS(-84.12)PR 0 0 1 0 Q9H9A7 Q9H9A7 Q9H9A7 RMI1 RecQ-mediated genome instability protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 916.442138671875 2 801.863621 1601.71269 30958.8854659077 1.3645 0.0010942 142890 114.58 142890 114.58 916.946586484006 85.92 0.45471 85.92 85.647 86.102 0 31 15 3 0.811467957232739 0.00122849411894986 0.0450977237621872 9.8185E-07 1 20055 142.4 118.11 3 9723800 9231.3 8039.4 8508.7 7991.4 10937 10086 11626 12038 8559.5 31720 8732.4 7594.3 8640.4 8241.9 10962 10100 11717 12955 8575.7 30147 1 1 1 1 1 1 1 1 1 1 3568 1967 3146 3337 3957 3957 3579 QSSLSEK 7 Phospho (STY) _QSS(ph)LSEK_ QS(0.007)S(0.599)LS(0.394)EK QS(-19.21)S(1.82)LS(-1.82)EK 0 0 1 0 Q7Z4S6 Q7Z4S6 Q7Z4S6 KIF21A Kinesin-like protein KIF21A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.848327636719 2 429.683865 857.353178 38582.1918353789 2.6172 0.0011246 533330 229.16 533330 229.16 658.84686964634 37.986 0.58271 37.986 37.628 38.211 0 43 18 3 0.772740440790381 0.00222110703933414 0.0654041622549863 0.016907 1 8593 76.416 38.114 3 32334000 13475 59436 14259 56382 15725 12509 19610 29442 62901 4532.6 12754 56130 14338 57373 15967 14717 20961 29013 60228 4949.4 1 1 1 1 1 1 1 1 1 1 3569 1342 3147 3338 3958 3958 2422 QSSPSGSEQLVR 12 Phospho (STY) _QSS(ph)PSGSEQLVR_ QS(0.152)S(0.844)PS(0.004)GS(0.001)EQLVR QS(-7.46)S(7.46)PS(-23.81)GS(-28.33)EQLVR 0 0 1 0 O15231 O15231 O15231 ZNF185 Zinc finger protein 185 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.385986328125 2 677.803563 1353.59257 34607.4203887123 1.6122 0.0010928 169050 114.58 169050 114.58 792.383347338137 39.772 0.69812 39.772 39.336 40.034 0 41 23 3 0.447997028703885 0.00108639464410517 0.0552410629427461 0.01251 1 9025 78.985 48.417 4 17453000 22240 7691.3 23345 8416.4 8328.5 22796 8564.8 12123 8108.7 5920.5 21049 7269.8 23261 8828.4 9341.4 22085 8694.4 12752 8020.2 5855.4 1 1 1 1 1 1 1 1 1 1 3570 84 3148 3339 3959 3959 146 QSSSSDTDLSLTPK 14 Phospho (STY) _QSS(ph)SSDTDLSLTPK_ QS(0.14)S(0.656)S(0.14)S(0.059)DT(0.005)DLSLTPK QS(-6.71)S(6.71)S(-6.71)S(-10.46)DT(-20.92)DLS(-105.01)LT(-141.72)PK 0 0 1 0 Q86YS7 Q86YS7 Q86YS7 C2CD5 C2 domain-containing protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.674011230469 3 515.894181 1544.66071 37132.0578446945 2.7858 0.0014372 296140 152.78 296140 152.78 668.672372681238 63.131 0.55551 63.131 62.817 63.372 0 50 18 4 0.858847971530025 0.0023866126210734 0.0478346036628246 1.9602E-10 2 14840 177.6 146.16 7 15781000 21141 13279 20631 15731 17213 23241 16386 19681 14571 9040.3 20003 12558 20761 16123 17656 22933 16670 20152 14454 8968 2 2 2 2 2 2 2 2 2 2 3571 1403 3149 3340 3960;3961 3960 2547 QSSSSRDDNMFQIGK 15 Oxidation (M),Phospho (STY) _QSS(ph)SSRDDNM(ox)FQIGK_ QSSSSRDDNM(1)FQIGK QS(0.372)S(0.5)S(0.055)S(0.074)RDDNMFQIGK QSSSSRDDNM(54.01)FQIGK QS(-1.29)S(1.29)S(-9.59)S(-8.31)RDDNMFQIGK 0 1 1 1 P53999 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.359069824219 3 599.248741 1794.72439 36665.1226930015 2.0466 0.0012264 254940 152.77 254950 152.78 752.023399620279 53.94 0.76594 53.94 53.534 54.299 0 74 25 4 0.80516327780185 0.003051542948529 0.0290780482876302 0.051333 1 12590 54.008 36.727 4 18192000 24102 14929 25851 16342 16779 27396 19106 20547 17618 24676 22813 14111 25823 16871 17594 26928 19296 21619 17447 23711 1 1 1 1 1 1 1 1 1 1 3572 706 3150 3341 3962 3962 91 1185;1186 QSSSSRDDNMFQIGK 15 Phospho (STY) _QS(ph)SSSRDDNMFQIGK_ QS(0.693)S(0.236)S(0.025)S(0.045)RDDNMFQIGK QS(4.67)S(-4.67)S(-14.41)S(-11.86)RDDNMFQIGK 0 0 1 1 P53999 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.025817871094 3 593.917102 1778.72948 36077.0705446204 2.0535 0.0012196 257230 152.77 257230 152.78 747.02530034724 67.021 1.3596 67.021 66.345 67.705 0 149 46 5 0.936371172724745 0.00240103190424198 0.0701530599255706 0.0054524 1 15802 86.557 56.405 4 45922000 12514 8130.4 13115 8268.2 9779.5 13755 9583.4 10323 8462.7 10760 11844 7681.3 13130 8569.3 10117 13519 9733.8 10811 8397.6 10371 1 1 1 1 1 1 1 1 1 1 3573 706 3150 3342 3963 3963 1185;1186 QSSTDSELK 9 Phospho (STY) _QSS(ph)TDSELK_ QSS(0.949)T(0.051)DSELK QS(-37.29)S(12.71)T(-12.71)DS(-54.48)ELK 0 0 1 0 Q9Y2K5 Q9Y2K5 Q9Y2K5 R3HDM2 R3H domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.884765625 2 537.721176 1073.4278 36187.2750579878 2.4645 0.0013252 426170 229.16 426180 229.16 766.884976592486 41.978 0.45362 41.978 41.77 42.223 0 27 15 2 0.974261997294148 0.00078023463138364 0.0208740353251507 5.6848E-06 1 9600 152.23 114.75 4 13975000 30951 20712 29692 19137 24142 32254 24423 24381 21963 14752 29282 19557 29903 19956 24828 31674 24780 25206 21775 14455 1 1 1 1 1 1 1 1 1 1 3574 2250 3151 3343 3964 3964 4157 QSSTPSAPELGQQPDVNISEWK 22 Phospho (STY) _QSS(ph)TPSAPELGQQPDVNISEWK_ QS(0.126)S(0.554)T(0.227)PS(0.093)APELGQQPDVNISEWK QS(-6.42)S(3.88)T(-3.88)PS(-7.75)APELGQQPDVNIS(-196.14)EWK 0 0 1 0 Q93100 Q93100 Q93100 PHKB Phosphorylase b kinase regulatory subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.819274902344 3 826.710998 2477.11116 31711.8939403405 1.5948 0.0013184 184800 152.78 184800 152.78 979.820852164771 87.074 0.58867 87.074 86.76 87.349 0 92 19 7 0.982202617778793 0.00479733217844841 0.0453188135947469 6.269E-17 1 20275 225.68 205.25 5 51256000 6314.2 8535.6 6844.8 8755.3 9036.9 6753.1 11862 9360.9 8152.6 19759 5976.9 8064.5 6894 8944 9077.6 6928.2 11837 9884 8201.5 18822 1 1 1 1 1 1 1 1 1 1 3575 1637 3152 3344 3965 3965 3029 QTDPSTPQQESSKPLGGIQPSSQTIQPK 28 Phospho (STY) _QTDPST(ph)PQQESSKPLGGIQPSSQTIQPK_ QT(0.002)DPS(0.131)T(0.862)PQQES(0.002)S(0.002)KPLGGIQPSSQTIQPK QT(-26.32)DPS(-8.18)T(8.18)PQQES(-25.61)S(-25.61)KPLGGIQPS(-117.92)S(-131.27)QT(-140.42)IQPK 0 0 1 1 Q14004 Q14004 Q14004 CDK13 Cyclin-dependent kinase 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 934.243286132813 4 761.869761 3043.44994 32342.6952742322 2.7521 0.0020968 225590 171.87 225600 171.87 933.991484742763 63.187 0.38242 63.187 62.99 63.372 -7.1054E-15 50 12 5 0.839289564450093 0.00326183418117229 0.0703466117966006 2.5432E-08 1 14836 171.48 146.64 8 22062000 9228.2 7802.5 10211 7261.7 6705.3 11336 7055.5 9402.1 8947.5 20818 8736 7367.7 10183 7554.5 7018.3 11196 7216.9 10133 8748.2 19821 1 1 1 1 1 1 1 1 1 1 3576 984 3153 3345 3966 3966 4552 QTETSVNASRSPEK 14 Phospho (STY) _QTETSVNASRS(ph)PEK_ QTETSVNAS(0.069)RS(0.931)PEK QT(-55.2)ET(-45.09)S(-45.09)VNAS(-11.33)RS(11.33)PEK 0 0 1 1 Q99550 Q99550 Q99550 MPHOSPH9 M-phase phosphoprotein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.353698730469 3 538.577074 1612.70939 37472.8519322819 1.8716 0.001008 283670 152.78 283670 152.78 691.353884437043 31.781 0.32329 31.781 31.645 31.969 0 26 10 3 0.7239435880797 0.000909017401115706 0.0149784174698986 0.0016227 1 7115 97.271 69.059 5 9359800 13389 12641 12663 12342 11029 14355 10004 13427 14607 3403.4 12667 11940 12770 12723 11279 14294 10359 13606 14218 3515.4 1 1 1 1 1 1 1 1 1 1 3577 1771 3154 3346 3967 3967 3259 QTLPISGSQTGSSGVISPQELLK 23 Phospho (STY) _QTLPISGSQTGSSGVIS(ph)PQELLK_ QTLPISGSQTGSSGVIS(1)PQELLK QT(-112.53)LPIS(-100.59)GS(-96.35)QT(-80.76)GS(-62.06)S(-51.81)GVIS(51.81)PQELLK 0 0 1 0 Q8IZD4 Q8IZD4 Q8IZD4 DCP1B mRNA-decapping enzyme 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 955.856567382813 3 803.075388 2406.20434 32654.9902696941 1.7697 0.0014212 190240 152.77 190240 152.78 956.184074141916 96.679 0.60524 96.679 96.289 96.894 0 42 20 3 0 0 0 6.7535E-08 1 22506 143.06 121.93 7 6290100 3299.4 2768.8 2664.7 3361.7 3285.7 3131.6 3796.6 4001.4 3953.3 27631 3119.7 2618.9 2728.3 3411.8 3305.1 3212.1 3844.4 4812.5 3894.1 26110 1 1 1 1 1 1 1 1 1 1 3578 1443 3155 3347 3968 3968 2676 QTNPSAMEVEEDDPVPEIR 19 Unmodified _QTNPSAMEVEEDDPVPEIR_ 0 0 0 0 P55072 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.720153808594 3 719.331919 2154.97393 34990.5378480599 1.4411 0.0010366 106190 76.387 106190 76.388 796.053412610336 70.511 0.69833 70.511 70.157 70.855 0 44 23 2 0.981858189536201 0.00104335152433513 0.00374126042061178 2.5196E-08 1 16513 172 150.12 1 32147000 9347.3 8038.4 9539.3 8955.2 11134 11771 8005 10309 11352 22372 8845.7 7598.9 9608.2 9184.2 11163 11697 8390.3 11072 11059 21304 1 1 1 1 1 1 1 1 1 1 3579 718 3156 3348 3969 3969 QTPMASSPRPK 11 Oxidation (M),Phospho (STY) _QTPM(ox)AS(ph)SPRPK_ QTPM(1)ASSPRPK QT(0.029)PMAS(0.566)S(0.405)PRPK QTPM(53)ASSPRPK QT(-12.93)PMAS(1.45)S(-1.45)PRPK 0 1 1 1 Q5SSJ5 Q5SSJ5 Q5SSJ5 HP1BP3 Heterochromatin protein 1-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.307312011719 3 432.531972 1294.57409 41786.6986404638 1.7242 0.00074577 353210 152.77 353210 152.78 585.307115764363 29.512 0.40929 29.512 29.34 29.749 0 42 13 4 0.452942017334504 0.00207985486990539 0.0228753440199391 0.047476 1 6594 53.001 26.375 3 21159000 19629 25272 17211 23141 31149 17987 28269 25946 29729 2353.8 18565 23862 17635 23808 30748 18364 28954 25789 29272 2816.9 1 1 1 1 1 1 1 1 1 1 3580 1179 3157 3349 3970 3970 156 2042 QTPTPPTTQLPQQVQPSLPAAPSADQPQQQPR 32 Phospho (STY) _QTPT(ph)PPTTQLPQQVQPSLPAAPSADQPQQQPR_ QT(0.258)PT(0.73)PPT(0.011)T(0.001)QLPQQVQPSLPAAPSADQPQQQPR QT(-4.51)PT(4.51)PPT(-18.28)T(-27.5)QLPQQVQPS(-73.38)LPAAPS(-95.66)ADQPQQQPR 0 0 1 0 Q09472 Q09472 Q09472 EP300 Histone acetyltransferase p300 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 936.728637695313 4 878.934695 3511.70968 32496.8541001628 1.4626 0.0012855 65184 57.292 65185 57.293 936.479385121585 70.477 0.86161 70.477 69.878 70.739 0 92 29 5 0.753111268991286 0.00221715836798459 0.0047243869320011 9.9804E-05 1 16521 104.6 95.754 6 38004000 3547.5 3671.6 4825.9 4293.1 3517.8 3896.1 4001.9 6341.7 4024.2 80826 3361.6 3472 4770.8 4363.7 3654 4105.9 4050.9 8701.9 3969.8 76254 1 1 1 1 1 1 1 1 1 1 3581 895 3158 3350 3971 3971 4517 QTSKGEDVGYVASEITMSDEER 22 Phospho (STY) _QTS(ph)KGEDVGYVASEITMSDEER_ QT(0.343)S(0.657)KGEDVGYVASEITMSDEER QT(-2.81)S(2.81)KGEDVGY(-74)VAS(-60.42)EIT(-102.97)MS(-114.38)DEER 0 0 1 1 O94885 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 990.801940917969 3 837.691274 2510.05199 31733.4892311591 1.8427 0.0015436 182370 152.77 182380 152.77 990.799399476804 78.791 0.34894 78.791 78.607 78.956 0 20 11 2 0.589388100388342 0.000604764516751671 0.012344425651821 7.8218E-12 1 18475 186.85 171.21 6 14722000 6675.8 2857.8 5413.6 2340.7 3005.3 6961.7 2776.8 4944.3 2614.2 51352 6312.3 2696.7 5493.8 2509.2 3188.6 6843.2 2833.1 6585 2586.3 48469 1 1 1 1 1 1 1 1 1 1 3582 224 3159 3351 3972 3972 386 QTSLSVSR 8 Phospho (STY) _QTSLSVS(ph)R_ QTS(0.001)LS(0.004)VS(0.995)R QT(-40.05)S(-30.53)LS(-24)VS(24)R 0 0 1 0 Q5VWN6 Q5VWN6 Q5VWN6 FAM208B Protein FAM208B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 593.805969238281 2 479.223689 956.432825 41023.1820129757 1.913 0.00091677 239100 114.58 239100 114.58 593.805287758223 38.494 0.31279 38.494 38.297 38.61 7.1054E-15 22 10 3 0.988317873372493 0.000605776454176637 0.0169564521891711 0.053019 1 8734 49.159 11.388 4 8131500 12533 15073 11323 15002 15504 13015 15704 14666 16302 2595.5 11855 14238 11522 15376 15490 13160 15992 14725 16060 2783.4 1 1 1 1 1 1 1 1 1 1 3583 1211 3160 3352 3973 3973 2127 QTSSFLV 7 Phospho (STY) _QTS(ph)SFLV_ QT(0.06)S(0.47)S(0.47)FLV QT(-8.9)S(0)S(0)FLV 0 0 1 0 Q9Y624 Q9Y624 Q9Y624 F11R Junctional adhesion molecule A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 545.773071289063 2 431.191326 860.3681 42520.7823048965 0.93194 0.00040184 265730 114.58 265730 114.58 545.772696092967 81.095 0.75241 81.095 80.782 81.534 0 55 25 3 0.944122532403198 0.00218350224965418 0.0645455545664305 0.01148 1 18962 85.731 77.799 3 19217000 4043.3 6102 4365.5 4687.1 3564.5 5065.3 4904.8 5050.8 5660.9 3746 3827.2 5756.3 4370 4905 3684.2 5067.2 4949 5179.8 5553.5 3644.2 1 1 1 1 1 1 1 1 1 1 3584 2308 3161 3353 3974 3974 4256;4257 QVAEQGGDLSPAANR 15 Phospho (STY) _QVAEQGGDLS(ph)PAANR_ QVAEQGGDLS(1)PAANR QVAEQGGDLS(116.43)PAANR 0 0 1 0 O94804 O94804 O94804 STK10 Serine/threonine-protein kinase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.297790527344 3 531.573664 1591.69916 40282.7845087372 1.2277 0.00065261 143700 76.388 143700 76.389 607.96163811443 39.42 0.84121 39.42 38.962 39.803 -7.1054E-15 77 28 4 0.747770227811504 0.00660725260975293 0.0774396043451849 9.986E-05 1 8924 116.43 99.762 1 132470000 15186 12076 15345 13364 26778 17603 30280 20358 13451 4657.3 14370 11415 15589 13711 26533 17498 30193 20454 13986 4856.6 1 1 1 1 1 1 1 1 1 1 3585 218 3162 3354 3975 3975 379 QVAGDAPVEQATAETASPVHR 21 Phospho (STY) _QVAGDAPVEQATAETAS(ph)PVHR_ QVAGDAPVEQATAET(0.074)AS(0.926)PVHR QVAGDAPVEQAT(-50.58)AET(-11)AS(11)PVHR 0 0 1 0 Q92766 Q92766 Q92766 RREB1 Ras-responsive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.400634765625 3 738.67774 2213.01139 34908.7326199278 0.59602 0.00044026 103410 76.387 103410 76.388 815.400038839127 47.213 0.46896 47.213 46.917 47.386 0 55 18 4 0.983558002780187 0.00471620122765031 0.0217941693366477 8.5847E-09 1 10899 173.36 159.34 3 123580000 12138 12333 11997 12711 17421 12904 18119 15047 12283 9855.1 11485 11653 12156 13031 17363 12971 18250 15307 12367 9628 1 1 1 1 1 1 1 1 1 1 3586 1618 3163 3355 3976 3976 2987 QVELALWDTAGQEDYDR 17 Unmodified _QVELALWDTAGQEDYDR_ 0 0 0 0 P61586;P08134;P62745 P61586 P61586 RHOA;RHOC;RHOB Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.037902832031 3 670.313076 2007.9174 35820.2149349198 2.0294 0.0013603 113960 76.388 113960 76.389 747.035721004182 90.152 0.66299 90.152 89.87 90.533 0 83 22 5 0.800302345355159 0.0084248973535527 0.198334683706217 1.989E-05 1 20993 132.13 110.9 1 51837000 3777.7 5953.5 5675.7 6050.1 4400.7 4828.6 4958.5 4961 5538.6 31130 3581.8 5624.7 5591.4 6186.5 4549.5 4954.8 5036.4 5909.2 5440.3 29428 1 1 1 1 1 1 1 1 1 1 3587 329 3164 3356 3977 3977 QVETEEAGVVTTATASVNLKVSPK 24 Phospho (STY) _QVETEEAGVVTTATASVNLKVS(ph)PK_ QVETEEAGVVTTATASVNLKVS(0.999)PK QVET(-159.36)EEAGVVT(-87.44)T(-70.21)AT(-48.16)AS(-33.14)VNLKVS(33.14)PK 0 0 1 1 O75475 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.449645996094 4 635.322921 2537.26258 35717.6654356015 2.2277 0.0014153 270530 171.87 270530 171.87 807.446897959626 82.241 1.3505 82.241 81.853 83.204 0 167 46 5 0.944014521544716 0.00418520116990594 0.147199451789043 7.2076E-13 1 19201 209.4 181.9 6 30570000 4765.2 6168 4740.3 5499.9 4601.6 4825.2 5934.4 5280.3 5388.8 35490 4509 5822.9 4775.4 5677 4696.3 4939.2 5961.7 6348.3 5340.2 33541 1 1 1 1 1 1 1 1 1 1 3588 188 3165 3357 3978 3978 328 QVHPDTGISSK 11 Phospho (STY) _QVHPDTGIS(ph)SK_ QVHPDT(0.003)GIS(0.92)S(0.077)K QVHPDT(-24.89)GIS(10.77)S(-10.77)K 0 0 1 0 Q99880;Q99879;Q99877;Q93079;Q8N257;Q5QNW6;Q16778;P62807;P58876;P57053;P33778;P23527;P06899;O60814;Q96A08 Q99880 Q99880 HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST3H2BB;HIST2H2BF;HIST2H2BE;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BK;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 3-B;Histone H2B type 2-F;Histone H2B type 2-E;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-K;Histone H2B type 1-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 569.967590332031 3 416.858854 1247.55473 39809.9325105723 1.3811 0.00057571 366490 152.77 366490 152.77 569.633951756379 40.871 0.51177 40.871 40.599 41.111 0 53 17 4 0.751890777718747 0.00567637493001366 0.0217247825157086 0.0064537 1 9310 81.409 49.812 3 53255000 26795 29866 25117 30343 34834 25469 31943 31189 36339 3164.6 25348 28216 25502 31048 34739 25824 32775 31159 35670 3701.7 1 1 1 1 1 1 1 1 1 1 3589 156 3166 3358 3979 3979 265 QVHPDTGISSK 11 Phospho (STY) _QVHPDTGIS(ph)SK_ QVHPDTGIS(0.952)S(0.048)K QVHPDT(-37.21)GIS(12.99)S(-12.99)K 0 0 1 0 Q99880;Q99879;Q99877;Q93079;Q8N257;Q5QNW6;Q16778;P62807;P58876;P57053;P33778;P23527;P06899;O60814;Q96A08 Q99880 Q99880 HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST3H2BB;HIST2H2BF;HIST2H2BE;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BK;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 3-B;Histone H2B type 2-F;Histone H2B type 2-E;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-K;Histone H2B type 1-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 569.634704589844 3 416.858854 1247.55473 41996.3563054124 1.9352 0.00080671 366490 152.78 366490 152.78 569.634041774171 42.475 0.57228 42.475 42.194 42.766 0 47 19 4 0.621497127710996 0.00247341445823296 0.0221830624322426 0.0001033 1 9713 116.86 92.071 3 14118000 14317 17773 14902 13149 20858 15441 18472 16399 19037 1997.9 13549 16763 15041 13820 20782 15391 18933 16472 18760 2260.8 1 1 1 1 1 1 1 1 1 1 3590 156 3166 3358 3980 3980 265 QVNYNDGSQEDR 12 Phospho (STY) _QVNYNDGS(ph)QEDR_ QVNYNDGS(1)QEDR QVNY(-241.54)NDGS(241.54)QEDR 0 0 1 0 Q14839 Q14839 Q14839 CHD4 Chromodomain-helicase-DNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.369567871094 2 752.788641 1503.56273 33170.4554732652 1.7264 0.0012996 152210 114.58 152210 114.58 867.370158084989 32.914 0.49077 32.914 32.707 33.198 0 43 16 4 0.988062664971971 0.00114849703953745 0.0373456806242538 3.6411E-31 1 7355 308.22 275.66 2 16060000 11711 9970.6 10401 9249.3 21183 11133 23838 15462 7302.2 4094 11077 9414.8 10685 9571.2 20882 11137 23685 15465 7906.4 4212.8 1 1 1 1 1 1 1 1 1 1 3591 1030 3167 3359 3981 3981 1768 QVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEK 38 Oxidation (M),Phospho (STY) _QVPVM(ox)QGTGMQGASIQGGSQPGGFS(ph)PGQNQVTPQDHEK_ QVPVM(1)QGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEK QVPVMQGTGMQGASIQGGSQPGGFS(1)PGQNQVTPQDHEK QVPVM(42.28)QGTGM(-42.28)QGASIQGGSQPGGFSPGQNQVTPQDHEK QVPVMQGT(-160.1)GMQGAS(-111.01)IQGGS(-55.47)QPGGFS(55.47)PGQNQVT(-55.47)PQDHEK 0 1 1 0 P33240 P33240 P33240 CSTF2 Cleavage stimulation factor subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1106.02758789063 4 990.946471 3959.75678 29978.4748097359 1.7292 0.0017135 115630 114.58 115630 114.58 1106.02846832306 61.363 0.41045 61.363 61.124 61.535 -7.1054E-15 30 13 4 0.942309844468396 0.000908831054678253 0.0159219577328402 9.5684E-19 1 14407 239.26 221.01 10 19134000 2461.4 2106.8 2264.2 1580.6 2575.2 2477 2439.8 2711.9 1921.9 6235.9 2328.4 1987.2 2294.8 1669.4 2592.5 2457.5 2475.8 2899 1918.3 5934.6 1 1 1 1 1 1 1 1 1 1 3592 530 3168 3360 3982 3982 70 860 QVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEK 38 Phospho (STY) _QVPVMQGTGMQGASIQGGSQPGGFS(ph)PGQNQVTPQDHEK_ QVPVMQGTGMQGASIQGGSQPGGFS(1)PGQNQVTPQDHEK QVPVMQGT(-283.24)GMQGAS(-203.58)IQGGS(-86.51)QPGGFS(68.53)PGQNQVT(-68.53)PQDHEK 0 0 1 0 P33240 P33240 P33240 CSTF2 Cleavage stimulation factor subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1102.03173828125 4 986.947742 3943.76186 29481.0578799415 1.4964 0.0014769 116100 114.58 116100 114.58 1102.03146644014 69.751 0.49914 69.751 69.517 70.017 0 78 16 7 0.916502085870376 0.00834986016451552 0.17255187053559 1.8291E-58 1 16359 364.62 344.38 5 51460000 5629.7 4858.3 6824 5059.2 5607.6 5425.5 5140.9 6320.4 5313.7 7749.9 5331.6 4590.6 6786.9 5188.3 5756 5447.7 5260.2 6538.7 5235.7 7443.7 1 1 1 1 1 1 1 1 1 1 3593 530 3168 3361 3983 3983 860 QVSITGFFQR 10 Phospho (STY) _QVS(ph)ITGFFQR_ QVS(0.703)IT(0.297)GFFQR QVS(3.74)IT(-3.74)GFFQR 0 0 1 0 Q15054 Q15054 Q15054 POLD3 DNA polymerase delta subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 746.382385253906 2 631.800095 1261.58564 36554.9587476415 2.1233 0.0013415 181360 114.58 181360 114.58 746.381201542951 94.182 0.55016 94.182 93.935 94.485 0 53 18 4 0.989625581777099 0.00418364453135303 0.173591726373795 0.00020977 1 21919 121.45 95.037 2 21394000 19973 7021 19286 6142.2 9530.8 19810 10395 11411 7243 53069 18897 6627.5 19342 6579.9 10257 19241 10454 13371 7280.4 50235 1 1 1 1 1 1 1 1 1 1 3594 1052 3169 3362 3984 3984 1817 QVSTENDSTLVHR 13 Phospho (STY) _QVST(ph)ENDSTLVHR_ QVS(0.331)T(0.669)ENDSTLVHR QVS(-3.06)T(3.06)ENDS(-72.07)T(-79.48)LVHR 0 0 1 0 O75592 O75592 O75592 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.958862304688 3 522.570031 1564.68826 41221.8640192729 1.6214 0.00084731 146180 76.387 146180 76.388 598.956644145892 38.616 0.60758 38.616 38.297 38.904 0 35 20 3 0.542884539395201 0.000720589203138364 0.00962173617209503 0.00020312 1 8777 110.48 92.979 4 9821700 18188 12346 16906 12508 14405 17763 14284 14946 13080 3517.4 17206 11664 17066 12917 14763 17541 14513 15207 12957 3657.9 1 1 1 1 1 1 1 1 1 1 3595 194 3170 3363 3985 3985 4343 QVSVSISSAVK 11 Phospho (STY) _QVS(ph)VSISSAVK_ QVS(0.962)VS(0.038)ISSAVK QVS(14.06)VS(-14.06)IS(-57.98)S(-78.69)AVK 0 0 1 0 P32249 P32249 P32249 GPR183 G-protein coupled receptor 183 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.310913085938 3 395.535599 1183.58497 43167.5113447383 1.3726 0.00054292 386250 152.78 386250 152.78 548.310928543689 69.89 0.49205 69.89 69.638 70.13 0 25 16 2 0.575377991161045 0.000557868858191758 0.00625414449264406 0.00012917 1 16409 111.35 69.952 4 8185700 6134.7 4210.7 6986.2 4254.3 3823.7 8649 4132.3 5291.9 4615 4120.5 5808.2 3978 6947.6 4436.1 4071.9 8438.9 4204.7 5562.4 4533.2 4002.4 1 1 1 1 1 1 1 1 1 1 3596 527 3171 3364 3986 3986 855 QVYEEEYGSSLEDDVVGDTSGYYQR 25 Unmodified _QVYEEEYGSSLEDDVVGDTSGYYQR_ 0 0 0 0 P08758 P08758 P08758 ANXA5 Annexin A5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1040.47021484375 3 963.417545 2887.23081 30120.3550459827 1.1316 0.0010902 79285 76.384 79286 76.385 1040.46833628148 83.403 0.35168 83.403 83.204 83.555 0 29 11 3 0.993289278152873 0.00387762451324703 0.0598993006365884 1.0667E-07 1 19504 150.72 127 1 12505000 2054.5 2090.7 2709 2508.3 7064.9 2967.9 8436 4924.3 2432.1 22112 1946.6 1977.4 2746.1 2557.3 6926 3020.5 8356.8 5529.9 2654.4 20935 1 1 1 1 1 1 1 1 1 1 3597 338 3172 3365 3987 3987 QWVDTDDTSSENTVVPPETYVK 22 Unmodified _QWVDTDDTSSENTVVPPETYVK_ 0 0 0 0 P15927 P15927 P15927 RPA2 Replication protein A 32 kDa subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 990.504150390625 3 837.390491 2509.14964 30881.86951407 2.3085 0.0019331 182440 152.77 182440 152.78 990.499539878489 79.333 0.56849 79.333 79.106 79.674 0 34 19 3 0.660520527823234 0.00120024732756939 0.0655757554124338 5.994E-08 1 18623 150.83 130.75 1 10797000 3813.7 3990.2 3726.2 4251.1 4080.8 4360.4 4935.9 6140.4 4630.3 19635 3608.4 3770.9 3763 4350.8 4132.1 4425 4974.9 6681.9 4581.6 18631 1 1 1 1 1 1 1 1 1 1 3598 399 3173 3366 3988 3988 QYAENYTRPSSR 12 Phospho (STY) _QYAENYTRPS(ph)SR_ QYAENYT(0.017)RPS(0.568)S(0.415)R QY(-44.73)AENY(-31.6)T(-15.12)RPS(1.36)S(-1.36)R 0 0 1 1 Q9Y608 Q9Y608 Q9Y608 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.61328125 3 517.891105 1550.65149 40724.4728210494 1.0427 0.00054003 147500 76.387 147500 76.388 594.278146310491 35.572 0.43827 35.572 35.299 35.737 0 38 14 3 0.980627603895772 0.00249514161150272 0.0318644185248457 0.039123 1 7997 44.734 38.762 5 19164000 10498 11020 11192 12395 13160 10419 15673 13141 12082 3172.9 9936.7 10418 11258 12611 13270 10572 15735 13172 12074 3291.8 1 1 1 1 1 1 1 1 1 1 3599 2304 3174 3367 3989 3989 4245;4246 QYTFKMNEDTQEEPGKSEEEK 21 3 Phospho (STY) _QY(ph)T(ph)FKMNEDT(ph)QEEPGKSEEEK_ QY(0.985)T(0.972)FKMNEDT(0.68)QEEPGKS(0.363)EEEK QY(16.18)T(13.62)FKMNEDT(2.99)QEEPGKS(-2.99)EEEK 0 0 3 2 Q01484 Q01484 Q01484 ANK2 Ankyrin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 926.928344726563 4 697.509994 2786.01087 32477.6441691221 2.6038 0.0018162 328550 229.16 328550 229.17 926.9237554054 73.876 1.0699 73.876 73.528 74.598 0 188 36 8 0.949367358671975 0.00398685036614935 0.04693795315412 0.017677 1 17331 66.886 12.281 4 34545000 12370 17277 11369 16224 13841 11045 9868.1 17726 15813 63899 11701 16315 11528 16639 13849 11507 10398 19447 15350 60579 1 1 1 1 1 1 1 1 1 1 3600 837 3175 3368 3990 3990 4507;4508;4878 RAAEDDEDDDVDTK 14 Unmodified _RAAEDDEDDDVDTK_ 0 0 0 1 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.997924804688 3 531.888544 1592.6438 37850.4280185419 1.6657 0.00088599 287230 152.78 287230 152.78 684.663990056954 32.26 0.6174 32.26 31.969 32.586 0 74 20 5 0.990531350422427 0.00564584220369473 0.107929641852421 8.0093E-16 1 7187 232.78 194.87 1 79539000 21594 11737 22539 12193 23545 20776 25452 19355 12238 3913.6 20437 11090 22657 12630 23849 20431 25454 19587 12636 4133.1 1 1 1 1 1 1 1 1 1 1 3601 311 3176 3369 3991 3991 RADLNQGIGEPQSPSR 16 Phospho (STY) _RADLNQGIGEPQS(ph)PSR_ RADLNQGIGEPQS(0.978)PS(0.022)R RADLNQGIGEPQS(16.57)PS(-16.57)R 0 0 1 1 Q96C19 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.006652832031 3 602.282773 1803.82649 38037.9122858034 1.0793 0.00065007 126830 76.389 126830 76.39 679.006110640304 40.748 0.4284 40.748 40.51 40.938 0 31 14 3 0.893631296855421 0.00168668833959343 0.00962056000500018 0.0059103 1 9287 87.659 65.126 2 23600000 14146 11729 13330 11474 10200 14488 10449 11111 12547 7547.5 13383 11079 13431 11845 10542 14359 10681 11503 12291 7364 1 1 1 1 1 1 1 1 1 1 3602 1659 3177 3370 3992 3992 3056 RADLNQGIGEPQSPSRR 17 Phospho (STY) _RADLNQGIGEPQS(ph)PSRR_ RADLNQGIGEPQS(0.828)PS(0.172)RR RADLNQGIGEPQS(6.83)PS(-6.83)RR 0 0 1 2 Q96C19 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 730.705078125 3 654.316477 1959.9276 36032.9006684348 1.8603 0.0012172 116740 76.388 116750 76.389 731.038240314646 36.309 0.42648 36.309 36.086 36.513 0 36 14 3 0.585125551466174 0.00134427301706415 0.0255560375185801 0.0082747 1 8172 87.509 57.45 2 17206000 8529.3 7584.5 8733.1 8329.9 7209.4 8393.7 6761 7209 8421.2 2862.9 8071.6 7169.1 8762.6 8508.4 7401.3 8401.1 6949.1 7363.4 8238.8 2862.6 1 1 1 1 1 1 1 1 1 1 3603 1659 3178 3371 3993 3993 3056 RADSGEEENTK 11 Phospho (STY) _RADS(ph)GEEENTK_ RADS(1)GEEENTK RADS(58.63)GEEENT(-58.63)K 0 0 1 1 Q9BVG4 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.286743164063 3 439.176911 1314.5089 40016.5260439327 1.6253 0.0007138 347870 152.77 347870 152.78 591.952163943039 25.87 0.31364 25.87 25.702 26.016 0 22 10 3 0.732380391564329 0.00282954175015961 0.0107811050249225 0.00018708 1 5769 104.45 69.567 2 12273000 6945 8599.4 7423 7314.5 9385.4 7458.3 10083 8521.5 8660 3020 6573.6 8116.2 7472.4 7591 9417 7488.4 10191 8597.5 8605.2 3040.9 1 1 1 1 1 1 1 1 1 1 3604 1841 3179 3372 3994 3994 3368 RAEDGSVIDYELIDQDAR 18 Unmodified _RAEDGSVIDYELIDQDAR_ 0 0 0 1 P07355 P07355 P07355 ANXA2 Annexin A2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.390197753906 3 688.999269 2063.97598 35621.2642355272 1.6026 0.0011042 110870 76.389 110870 76.39 765.722158737219 69.93 0.57721 69.93 69.638 70.215 0 65 19 4 0.919127132839425 0.00408077467746357 0.0330380518849455 8.7799E-11 1 16395 190.25 165.95 1 33200000 6809.7 9128.1 7137.9 8655.5 13155 6585 13243 8777.6 10314 12465 6445 8620.3 7242.4 8882.7 12993 6743.9 13396 9095.2 10301 11941 1 1 1 1 1 1 1 1 1 1 3605 318 3180 3373 3995 3995 RAETFAGYDCTNSPTK 16 Phospho (STY) _RAETFAGYDCTNS(ph)PTK_ RAETFAGYDCT(0.044)NS(0.927)PT(0.029)K RAET(-66.13)FAGY(-58.81)DCT(-13.25)NS(13.25)PT(-15.01)K 0 0 1 1 Q6ZSZ5 Q6ZSZ5 Q6ZSZ5 ARHGEF18 Rho guanine nucleotide exchange factor 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.377685546875 3 633.264391 1896.77134 35260.2316065119 2.4188 0.0015317 241250 152.78 241250 152.78 786.375161662792 51.275 0.43859 51.275 51.021 51.459 0 54 14 5 0.682662346951269 0.00363089700428746 0.0160678736474959 8.3619E-05 1 11935 118.32 102.55 5 24345000 28195 15975 30936 16670 20003 31333 17759 24539 18693 130410 26689 15095 30855 17309 20914 30912 18211 28807 18404 123360 1 1 1 1 1 1 1 1 1 1 3606 1299 3181 3374 3996 3996 2318 RANFDEENAYFEDEEEDSSNVDLPYIPAENSPTR 34 Phospho (STY) _RANFDEENAYFEDEEEDSSNVDLPYIPAENS(ph)PTR_ RANFDEENAYFEDEEEDSSNVDLPYIPAENS(0.833)PT(0.167)R RANFDEENAY(-267.82)FEDEEEDS(-168.07)S(-160.61)NVDLPY(-77.88)IPAENS(6.97)PT(-6.97)R 0 0 1 1 Q86XP3 Q86XP3 Q86XP3 DDX42 ATP-dependent RNA helicase DDX42 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1069.21630859375 4 1011.42482 4041.67017 30156.9035719916 1.4954 0.0015125 56643 57.29 56645 57.292 1068.96610681755 86.719 0.72215 86.719 86.391 87.113 0 92 24 5 0.987502382185251 0.00671342958893023 0.11271802803552 4.6925E-35 2 20218 311.24 299.35 6 63519000 2403.6 1353.4 2446.9 2391 3895.3 3643 3206.9 5169.8 3578.4 62183 2274.6 1284.4 2477.9 2411.8 3858.1 3731.9 3307.6 7000.2 3515.1 58672 2 2 2 2 2 2 2 2 2 2 3607 1398 3182 3375 3997;3998 3998 2539 RAPSPGAYK 9 Phospho (STY) _RAPS(ph)PGAYK_ RAPS(1)PGAYK RAPS(59.61)PGAY(-59.61)K 0 0 1 1 P54259 P54259 P54259 ATN1 Atrophin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 495.606384277344 3 342.830458 1025.46955 42920.6364196844 0.94288 0.00032325 445630 152.78 445630 152.78 495.606331153979 42.633 0.65887 42.633 42.253 42.911 0 55 22 3 0.837278522623508 0.00259254459258326 0.0166513160701886 0.0056692 1 9734 86.288 46.243 2 19739000 17936 20502 20481 19294 14725 19302 17279 19178 22006 1615.5 16982 19360 20411 19884 15324 19349 17596 19291 21513 1965 1 1 1 1 1 1 1 1 1 1 3608 709 3183 3376 3999 3999 1188 RAPSPLPK 8 Phospho (STY) _RAPS(ph)PLPK_ RAPS(1)PLPK RAPS(95.62)PLPK 0 0 1 1 Q9BSL1 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 468.610870361328 3 315.835432 944.484467 45897.4742056927 0.11694 3.6933E-05 483720 152.78 483720 152.78 468.610996840113 43.693 0.70728 43.693 43.465 44.172 0 81 23 5 0.983375741358526 0.00228799675694593 0.00618669819352378 0.0032781 1 9990 95.618 36.076 1 277420000 9264.4 91232 10985 84166 25847 9428.2 23050 40500 89509 1848.3 8772.9 86143 11139 85649 25375 13179 25417 39476 85500 2677.7 1 1 1 1 1 1 1 1 1 1 3609 1817 3184 3377 4000 4000 3331 RAPSSPVAKPGPVK 14 Phospho (STY) _RAPSS(ph)PVAKPGPVK_ RAPS(0.269)S(0.731)PVAKPGPVK RAPS(-4.33)S(4.33)PVAKPGPVK 0 0 1 2 Q9GZR2 Q9GZR2 Q9GZR2 REXO4 RNA exonuclease 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.573974609375 4 368.451167 1469.77556 42086.7680190565 0.98773 0.00036393 466470 171.87 466470 171.87 540.323606977593 43.702 0.44177 43.702 43.492 43.934 0 40 14 4 0.850426960460789 0.00212107664539168 0.02183398866523 0.039414 1 10039 47.113 33.083 2 20514000 9568.6 17846 11721 17938 8366.2 12139 9290 15250 19100 3978 9062.4 16859 11640 18320 8710.5 12473 9680.7 15296 18430 4098.7 1 1 1 1 1 1 1 1 1 1 3610 1891 3185 3378 4001 4001 3445 RAPSTSPSFEGTQETYTVAHEENVR 25 Phospho (STY) _RAPSTS(ph)PSFEGTQETYTVAHEENVR_ RAPS(0.116)T(0.116)S(0.478)PS(0.289)FEGTQETYTVAHEENVR RAPS(-6.14)T(-6.14)S(2.19)PS(-2.19)FEGT(-63.81)QET(-131.44)Y(-166.17)T(-168.51)VAHEENVR 0 0 1 1 Q9BUT9 Q9BUT9 Q9BUT9 FAM195A Protein FAM195A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.616577148438 4 719.0739 2872.26649 35787.0913688887 1.462 0.0010513 79672 57.29 79673 57.291 776.615443646969 52.331 0.62447 52.331 51.983 52.607 0 75 21 6 0.940423915555499 0.00257221980597485 0.0185324179139653 1.1516E-17 1 12155 221.23 201.04 8 41808000 7394.5 13096 9198.3 9733.6 10551 7579.8 11867 11160 12726 21851 7003.8 12352 9177.5 10165 10647 7779.8 12040 11714 12520 20833 1 1 1 1 1 1 1 1 1 1 3611 1837 3186 3379 4002 4002 3365 RAPSVANVGSHCDLSLK 17 Phospho (STY) _RAPS(ph)VANVGSHCDLSLK_ RAPS(1)VANVGSHCDLSLK RAPS(66.45)VANVGS(-66.45)HCDLS(-116.38)LK 0 0 1 1 P21333 P21333 P21333 FLNA Filamin-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.078735351563 3 630.967908 1889.8819 35135.532054036 1.7667 0.0011147 242130 152.78 242130 152.78 784.077457005543 58.313 0.61295 58.313 58.023 58.636 0 85 20 6 0.995706508198444 0.0170792026791115 0.33443951305728 1.0614E-22 1 13675 262.55 230.16 3 128920000 37699 28537 41450 25632 97399 43099 120390 61625 31889 14850 35687 26941 42250 26776 95779 42681 119020 61544 35219 15409 1 1 1 1 1 1 1 1 1 1 3612 451 3187 3380 4003 4003 734 RAQSTDSLGTSGSLQSK 17 Phospho (STY) _RAQS(ph)TDSLGTSGSLQSK_ RAQS(0.9)T(0.097)DS(0.003)LGTSGSLQSK RAQS(9.68)T(-9.68)DS(-24.2)LGT(-83.7)S(-121.27)GS(-167.16)LQS(-245.58)K 0 0 1 1 Q15276 Q15276 Q15276 RABEP1 Rab GTPase-binding effector protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.725891113281 3 601.614188 1801.82074 36398.3988434304 1.8406 0.0011073 253940 152.78 253940 152.78 754.389533385699 45.171 0.434 45.171 44.889 45.323 7.1054E-15 45 14 4 0.986162923632625 0.00352882251821249 0.0517104087592585 1.1307E-23 1 10379 285.31 234.37 7 25044000 16991 15543 17657 13849 17206 18793 17099 15429 17800 6626.2 16080 14673 17736 14403 17487 18587 17430 15807 17534 6596.5 1 1 1 1 1 1 1 1 1 1 3613 1066 3188 3381 4004 4004 1840 RASCTSSTSGSK 12 Phospho (STY) _RAS(ph)CTSSTSGSK_ RAS(0.993)CT(0.002)S(0.004)S(0.001)TSGSK RAS(24)CT(-26.14)S(-24)S(-31.02)T(-44.79)S(-51.51)GS(-68.5)K 0 0 1 1 P13807 P13807 P13807 GYS1 Glycogen [starch] synthase, muscle MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 883.931335449219 2 654.766123 1307.51769 32690.1970329549 2.3793 0.0015579 349990 229.16 350000 229.17 883.929680912954 24.09 0.26224 24.09 23.903 24.165 0 21 8 4 0.975912789233143 0.00196118872253086 0.0633936897128537 0.00022046 1 5392 109.83 92.623 7 5577900 3076.5 2465.9 3589.8 2792 2903.3 3194.5 3450.3 3702.4 2957.3 26179 2913.1 2331.3 3577.9 2853.3 2994.1 3239.7 3472.3 4482.9 2938.9 24737 1 1 1 1 1 1 1 1 1 1 3614 382 3189 3382 4005 4005 617 RASDTSLTQGIVAFR 15 Phospho (STY) _RAS(ph)DTSLTQGIVAFR_ RAS(0.999)DT(0.001)SLTQGIVAFR RAS(28.81)DT(-28.81)S(-45.91)LT(-80.85)QGIVAFR 0 0 1 1 Q9H0K1 Q9H0K1 Q9H0K1 SIK2 Serine/threonine-protein kinase SIK2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 644.671691894531 3 567.948843 1700.8247 39998.5446778395 2.0022 0.0011371 134500 76.388 134500 76.389 644.670732813766 75.363 0.50882 75.363 75.09 75.599 0 39 17 3 0.959169545511743 0.00201974527377247 0.0714381035340938 5.7442E-07 1 17700 153.06 126.09 4 7343600 4535.2 4036.6 3567.6 4132.9 4237.2 3842.6 5478.3 3341.5 4132.4 5356.4 4287.8 3813.8 3658.5 4233 4276.7 3868.4 5480 3532.6 4134.5 5121.1 1 1 1 1 1 1 1 1 1 1 3615 1906 3190 3383 4006 4006 3461 RASEELDGLFR 11 Phospho (STY) _RAS(ph)EELDGLFR_ RAS(1)EELDGLFR RAS(121.82)EELDGLFR 0 0 1 1 Q14814 Q14814 Q14814 MEF2D Myocyte-specific enhancer factor 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.402893066406 2 686.816474 1371.61839 34761.8831267938 2.03 0.0013943 166830 114.58 166830 114.58 801.398855753749 77.805 0.49234 77.805 77.487 77.979 0 51 16 4 0.859753792029807 0.00148323160816362 0.0478257478961052 0.00014988 1 18212 121.82 83.467 1 20985000 20148 6093.4 19154 4828.4 11128 20985 11948 12439 5249.3 19968 19061 5749.1 19247 5294.5 11772 20243 11939 13410 5463.6 19090 1 1 1 1 1 1 1 1 1 1 3616 1029 3191 3384 4007 4007 1763 RASGQAFELILSPR 14 Phospho (STY) _RASGQAFELILS(ph)PR_ RASGQAFELILS(1)PR RAS(-79.49)GQAFELILS(79.49)PR 0 0 1 1 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.001342773438 3 542.278412 1623.81341 40280.0398857368 1.3114 0.00071115 140860 76.388 140870 76.388 619.000334451252 80.49 1.2616 80.49 79.872 81.134 -1.4211E-14 152 42 5 0.896849256706062 0.00274223469091162 0.015006014185739 0.0030758 2 18777 94.42 75.03 2 40476000 10484 12334 10677 12218 8159.3 10720 8368.8 10748 12181 15901 9921 11651 10710 12528 8435.3 10843 8613 11259 11857 15221 2 2 2 2 2 2 2 2 2 2 3617 411 3192 3385 4008;4009 4008 658;659 RASGQAFELILSPR 14 Phospho (STY) _RAS(ph)GQAFELILSPR_ RAS(1)GQAFELILSPR RAS(153.99)GQAFELILS(-153.99)PR 0 0 1 1 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.667175292969 3 542.278412 1623.81341 39687.9478656863 1.1636 0.00063097 140860 76.388 140870 76.388 618.666581640954 84.3 2.3751 84.3 83.784 86.159 -1.4211E-14 298 82 6 0.997636073807903 0.00678396270103076 0.152865574210473 1.2368E-11 3 19625 211.41 175.76 2 502890000 13104 15239 14004 16069 19380 12527 19843 15741 16134 17834 12404 14401 14117 16392 19352 12789 20075 16202 16076 17157 3 3 3 3 3 3 3 3 3 3 3618 411 3192 3385 4010;4011;4012 4010 658;659 RASGQAFELILSPR 14 2 Phospho (STY) _RAS(ph)GQAFELILS(ph)PR_ RAS(1)GQAFELILS(1)PR RAS(109.18)GQAFELILS(109.18)PR 0 0 2 1 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.323486328125 3 568.933855 1703.77974 39129.5755576313 1.4142 0.00080458 134260 76.388 134270 76.388 645.321456127592 87.498 2.352 87.498 86.789 89.141 0 220 80 4 0.986064014592688 0.00206387535966144 0.034418082833584 0.00013393 2 20335 109.18 96.8 1 12288000 7642.1 11251 6445 10368 7677.4 8258.1 8544.6 9201.9 11554 19086 7226.9 10623 6575.3 10665 7733.4 8419.4 8738.4 9768.6 11273 18184 2 2 2 2 2 2 2 2 2 2 3619 411 3192 3386 4013;4014 4013 658;659 RASMQPIQIAEGTGITTR 18 Phospho (STY) _RAS(ph)MQPIQIAEGTGITTR_ RAS(1)MQPIQIAEGTGITTR RAS(67.29)MQPIQIAEGT(-67.29)GIT(-80.77)T(-79.46)R 0 0 1 1 Q14980 Q14980 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.057983398438 3 670.666118 2008.97652 35960.3394504861 1.6266 0.0010909 113900 76.387 113900 76.388 747.054108392263 69.962 0.45734 69.962 69.758 70.215 0 49 15 4 0.878376561824223 0.00146815714325898 0.0138402987911643 4.1038E-05 1 16415 119.75 101.39 4 13063000 6656 7436.2 5975.8 7832.2 9599.9 5635.5 10185 8613.4 7661.4 8507.8 6295.7 7027 6101.9 7982.4 9533.9 5800.2 10270 8780.8 7666.5 8210.4 1 1 1 1 1 1 1 1 1 1 3620 1036 3193 3387 4015 4015 1792 RASPNLFSEAQYQEAPVEK 19 Phospho (STY) _RAS(ph)PNLFSEAQYQEAPVEK_ RAS(0.979)PNLFS(0.021)EAQYQEAPVEK RAS(16.68)PNLFS(-16.68)EAQY(-53)QEAPVEK 0 0 1 1 Q9HC77 Q9HC77 Q9HC77 CENPJ Centromere protein J MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.793518066406 3 748.682602 2243.02598 33507.4534069878 1.7905 0.0013405 204060 152.78 204060 152.78 901.459908043715 73.407 0.71773 73.407 72.983 73.701 -1.4211E-14 62 24 4 0.884079913457453 0.00315545810554276 0.030730382713888 1.8501E-07 2 17224 147.28 127.03 3 22453000 19942 23621 19940 23049 17922 20683 18366 22656 24354 64580 18871 22311 20055 23663 18319 20983 18837 24595 23776 61334 2 2 2 2 2 2 2 2 2 2 3621 1984 3194 3388 4016;4017 4016 3603 RASPSKPASAPASR 14 Phospho (STY) _RAS(ph)PSKPASAPASR_ RAS(0.996)PS(0.004)KPASAPASR RAS(23.68)PS(-23.68)KPAS(-54.55)APAS(-84.79)R 0 0 1 2 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.019470214844 3 488.24359 1461.70894 38714.544419795 1.4912 0.00072806 312910 152.77 312910 152.78 641.018295140107 26.62 0.40271 26.62 26.423 26.826 -3.5527E-15 42 13 5 0.949789003512559 0.0117084808617126 0.0623168936095536 6.0782E-05 1 5924 131.31 104.58 4 94979000 22223 42262 21326 42517 16461 21753 15726 29791 46780 2317.1 21025 39924 21465 43306 17010 22836 16893 29641 44841 2871.3 1 1 1 1 1 1 1 1 1 1 3622 491 3195 3389 4018 4018 805 RASPSPPPK 9 2 Phospho (STY) _RAS(ph)PS(ph)PPPK_ RAS(1)PS(1)PPPK RAS(73.78)PS(73.78)PPPK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.897888183594 2 548.733039 1095.45153 35584.5679430434 2.0286 0.0011131 417620 229.16 417620 229.16 777.895967890299 32.664 1.3437 32.664 31.94 33.284 0 83 45 3 0.757971989813688 0.000531176549724327 0.00974840832653525 0.0077822 1 7204 73.781 39.906 1 7896900 14096 14144 13212 16218 15367 13447 15786 15086 14973 3916.8 13335 13373 13381 16481 15472 13631 16026 15187 14809 4037.3 1 1 1 1 1 1 1 1 1 1 3623 1436 3196 3390 4019 4019 2623;2624 RASPSPPPKR 10 2 Phospho (STY) _RAS(ph)PS(ph)PPPKR_ RAS(1)PS(1)PPPKR RAS(64.75)PS(64.75)PPPKR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.968200683594 3 418.191489 1251.55264 40993.8890655806 1.5248 0.00063767 365320 152.77 365320 152.78 570.966400243544 26.665 3.3493 26.665 25.901 29.25 -3.5527E-15 332 115 5 0.910370503237335 0.00897048113365367 0.230964212923641 0.013842 1 5843 64.752 52.125 1 142370000 11991 17008 13459 15320 15543 14181 16517 15357 15137 2917.2 11352 16057 13496 15815 15663 14286 16728 15446 14994 3102.3 1 1 1 1 1 1 1 1 1 1 3624 1436 3197 3391 4020 4020 2623;2624 RASPSPPPKR 10 2 Phospho (STY) _RAS(ph)PS(ph)PPPKR_ RAS(1)PS(1)PPPKR RAS(48.21)PS(48.21)PPPKR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 428.726196289063 4 313.895436 1251.55264 46871.9607341786 -0.073812 -2.3169E-05 365030 114.58 365030 114.58 428.476597365647 26.669 3.291 26.669 25.929 29.22 0 295 113 3 0.508430175807685 0.00385335399906441 0.0323316124101489 0.041644 1 6022 48.214 29.156 1 67945000 19425 22771 19860 21135 21698 19790 24163 23762 23093 4217.6 18383 21502 20000 21779 21945 19954 24448 23808 22831 4521.3 1 1 1 1 1 1 1 1 1 1 3625 1436 3197 3391 4021 4021 2623;2624 RASQEANLLTLAQK 14 Phospho (STY) _RAS(ph)QEANLLTLAQK_ RAS(1)QEANLLTLAQK RAS(75.56)QEANLLT(-75.56)LAQK 0 0 1 1 Q6PJG2 Q6PJG2 Q6PJG2 ELMSAN1 ELM2 and SANT domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.724853515625 3 541.613571 1621.81888 36684.971585985 2.0345 0.0011019 282070 152.78 282080 152.78 694.723434056471 78.035 0.68148 78.035 77.751 78.432 -1.4211E-14 93 23 5 0.965533240424327 0.00882261171461951 0.0500055166496913 2.1988E-10 1 18265 178.72 114.52 2 88127000 8420.2 14633 8481.3 14686 21559 7704.4 23186 17186 19046 5674.8 7967.9 13824 8699.8 14964 21125 8163.7 23410 17042 18968 5741.3 1 1 1 1 1 1 1 1 1 1 3626 1269 3198 3392 4022 4022 2248 RASQGLLSSIENSESDSSEAK 21 Phospho (STY) _RAS(ph)QGLLSSIENSESDSSEAK_ RAS(0.996)QGLLS(0.003)S(0.001)IENSESDSSEAK RAS(24.66)QGLLS(-24.66)S(-30.39)IENS(-78.13)ES(-110.63)DS(-136.49)S(-139.99)EAK 0 0 1 1 Q5UIP0 Q5UIP0 Q5UIP0 RIF1 Telomere-associated protein RIF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.115966796875 3 759.007703 2274.00128 34645.7164587714 2.1496 0.0016315 201280 152.77 201280 152.78 912.114510034605 73.823 0.39811 73.823 73.585 73.983 0 37 13 4 0.971821132099991 0.00125563510117882 0.0193852445204729 2.1203E-08 1 17339 170.32 144.52 7 9462000 11192 8352.1 9834.9 7638.3 8578.8 10133 10115 10289 9342 19450 10585 7885.9 9968.7 7926.5 8800.9 10084 10201 10900 9250.5 18552 1 1 1 1 1 1 1 1 1 1 3627 1197 3199 3393 4023 4023 2092 RASSASVPAVGASAEGTR 18 Phospho (STY) _RAS(ph)SASVPAVGASAEGTR_ RAS(0.709)S(0.286)AS(0.005)VPAVGASAEGTR RAS(3.94)S(-3.94)AS(-21.34)VPAVGAS(-86.6)AEGT(-89.23)R 0 0 1 1 Q9BZ23 Q9BZ23 Q9BZ23 PANK2 Pantothenate kinase 2, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.001892089844 3 585.27914 1752.81559 37923.2064351477 1.8852 0.0011034 130520 76.388 130520 76.389 661.667934761926 39.25 0.58108 39.25 38.962 39.543 0 51 19 3 0.805332888814756 0.00240230068302031 0.0177160498022411 0.0041779 1 8934 91.696 74.562 5 13726000 10688 7735.6 9254.1 10484 9272.6 9694 7857.8 10521 9318 5105.2 10108 7323.2 9398.3 10584 9390.2 9772 8106.5 10675 9132.1 5050.7 1 1 1 1 1 1 1 1 1 1 3628 1873 3200 3394 4024 4024 3411 RASSLNFLNK 10 Phospho (STY) _RASS(ph)LNFLNK_ RAS(0.062)S(0.938)LNFLNK RAS(-11.77)S(11.77)LNFLNK 0 0 1 1 Q9H0B6 Q9H0B6 Q9H0B6 KLC2 Kinesin light chain 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.314758300781 3 410.539455 1228.59654 43074.8120646474 1.7581 0.00072175 372130 152.78 372130 152.78 563.314408871282 71.011 0.46117 71.011 70.768 71.229 0 43 15 4 0.905959605569735 0.00217612079134588 0.014015147117689 0.00011355 1 16663 125.29 65.454 2 17238000 5008.5 14316 5426.2 13336 4833.4 5578.3 4064.6 7565.1 15796 2688.6 4740.9 13518 5431.2 13628 4940.2 5967.6 4495.6 7592.4 15089 2706.7 1 1 1 1 1 1 1 1 1 1 3629 1899 3201 3395 4025 4025 3454 RASSPFR 7 Phospho (STY) _RASS(ph)PFR_ RAS(0.021)S(0.979)PFR RAS(-16.67)S(16.67)PFR 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 377.194458007813 3 300.807765 899.401466 50863.8521260907 0.32899 9.8962E-05 253940 76.388 253940 76.388 377.195291513652 30.381 0.50767 30.381 30.103 30.611 -3.5527E-15 44 16 4 0.467903740192087 0.0014277890631516 0.0397954523024567 0.015311 1 6763 67.507 25.433 2 16541000 14058 24584 14911 30849 29341 16053 29464 25712 34184 4223.9 13305 23259 15142 31055 28929 16880 30115 25544 33529 4572.4 1 1 1 1 1 1 1 1 1 1 3630 1035 3202 3396 4026 4026 1778 RASVCAEAYNPDEEEDDAESR 21 Phospho (STY) _RAS(ph)VCAEAYNPDEEEDDAESR_ RAS(1)VCAEAYNPDEEEDDAESR RAS(98.99)VCAEAY(-98.99)NPDEEEDDAES(-160.25)R 0 0 1 1 P31323 P31323 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 908.380004882813 3 831.655112 2491.94351 33343.4750732348 1.7937 0.0014918 91850 76.387 91852 76.389 908.377134145046 45.069 0.46549 45.069 44.829 45.294 0 52 15 5 0.979477628791493 0.00364447232119232 0.0525808692741353 1.6075E-11 1 10364 195.58 183.02 3 26092000 4251.6 7488.1 4383.4 7891.3 5058.6 3980.7 4846.8 5551.4 8422.3 7643 4023.6 7076.1 4414.1 8015.1 5094 4198.6 5041.7 5737.9 8158.7 7325.3 1 1 1 1 1 1 1 1 1 1 3631 519 3203 3397 4027 4027 848 RASYDYNQDR 10 Phospho (STY) _RAS(ph)YDYNQDR_ RAS(1)YDYNQDR RAS(45.4)Y(-45.4)DY(-52.15)NQDR 0 0 1 1 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.240356445313 3 456.517379 1366.53031 43944.0038996772 1.5107 0.00068965 167330 76.388 167330 76.389 532.905919558136 30.105 0.38938 30.105 29.924 30.313 3.5527E-15 28 12 3 0.783045583312854 0.00086722452255232 0.0193140878923726 0.026926 1 6735 55.186 41.44 3 5027900 8353.8 9864.4 9724 7123.9 7663.6 9728.7 8900.6 7994.4 8155.6 3181.7 7910 9303 9689.9 7523.7 7915.5 9619.5 8980.3 8182.1 8078.8 3181 1 1 1 1 1 1 1 1 1 1 3632 1756 3204 3398 4028 4028 3235 RDAGGPRPESPVPAGR 16 Phospho (STY) _RDAGGPRPES(ph)PVPAGR_ RDAGGPRPES(1)PVPAGR RDAGGPRPES(53.03)PVPAGR 0 0 1 2 Q9BVG9 Q9BVG9 Q9BVG9 PTDSS2 Phosphatidylserine synthase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.663513183594 3 566.94057 1697.79988 40003.4167626922 1.4211 0.00080568 134740 76.388 134740 76.389 643.328304815937 27.294 0.28563 27.294 27.152 27.437 0 20 9 3 0.909746301198946 0.00128964074417305 0.00858448603944996 0.049193 1 6089 53.033 42.217 1 7221300 5809.8 5592.5 4720 5291.5 4931.1 4555 4912.2 5052.6 5688.3 2898.3 5493.4 5281.3 4817.9 5439.7 4992 4610.3 5022.4 5136.2 5579.7 2846 1 1 1 1 1 1 1 1 1 1 3633 1842 3205 3399 4029 4029 3369 RDSASYR 7 Phospho (STY) _RDS(ph)ASYR_ RDS(0.984)AS(0.016)YR RDS(18.03)AS(-18.03)Y(-62.54)R 0 0 1 1 Q92841 Q92841 Q92841 DDX17 Probable ATP-dependent RNA helicase DDX17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.27490234375 2 467.692556 933.370559 41053.9657415124 1.9642 0.00091864 245000 114.58 245000 114.58 582.27746644407 22.674 1.2993 22.674 22.488 23.787 0 54 44 2 0.896445229503563 0.00583375363838148 0.0672014258254236 0.011424 1 5106 87.942 46.515 3 11172000 6608.1 3927.3 6903.9 2690 6438.5 6769.6 5428.3 6010.4 2596.4 9900.2 6254.1 3703 6927.2 2903 6544.3 6612.5 5496.5 6356.6 2682 9461.3 1 1 1 1 1 1 1 1 1 1 3634 1626 3206 3400 4030 4030 3006 RDSASYRDR 9 Phospho (STY) _RDS(ph)ASYRDR_ RDS(0.65)AS(0.349)Y(0.001)RDR RDS(2.7)AS(-2.7)Y(-29.96)RDR 0 0 1 2 Q92841 Q92841 Q92841 DDX17 Probable ATP-dependent RNA helicase DDX17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 478.893646240234 3 402.506814 1204.49861 46425.229769831 1.1353 0.00045695 189780 76.387 189780 76.388 478.893814591896 21.142 0.51846 21.142 20.88 21.399 -3.5527E-15 37 17 3 0.968185375853558 0.00437848169705107 0.0108468608388574 0.054099 1 4788 46.592 9.7452 3 4521500 1914.1 1158.5 1683.8 884.93 2430.3 1574.7 2691.4 1523.6 1221.5 2644.1 1810.4 1092.8 1718.3 936.4 2424.5 1552 2686.8 1609.9 1267.6 2525 1 1 1 1 1 1 1 1 1 1 3635 1626 3207 3401 4031 4031 3006 RDSFDDR 7 Phospho (STY) _RDS(ph)FDDR_ RDS(1)FDDR RDS(110.18)FDDR 0 0 1 1 P43243 P43243 P43243 MATR3 Matrin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.269775390625 2 495.687471 989.360389 40223.9493436851 1.8558 0.0009199 231160 114.58 231160 114.58 610.26922084944 28.332 1.279 28.332 28.122 29.401 -3.5527E-15 101 43 4 0.845106867008937 0.00281283396545971 0.0828017716579937 0.0020514 1 6291 110.18 58.734 1 27683000 9470 10516 11598 10448 12845 9981.1 12439 11404 10817 2844.1 8969 9933.7 11571 10724 12954 10049 12637 11469 10742 2942 1 1 1 1 1 1 1 1 1 1 3636 595 3208 3402 4032 4032 969 RDSFDNCSLGESSK 14 Phospho (STY) _RDS(ph)FDNCSLGESSK_ RDS(1)FDNCSLGESSK RDS(55.01)FDNCS(-55.01)LGES(-128.05)S(-153.3)K 0 0 1 1 Q5UIP0 Q5UIP0 Q5UIP0 RIF1 Telomere-associated protein RIF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.3330078125 3 561.222303 1680.64508 36686.8825578104 2.3597 0.0013243 272220 152.78 272220 152.78 714.331843559708 49.412 0.95786 49.412 49.024 49.982 -7.1054E-15 139 32 6 0.989519599546445 0.00549789055591403 0.0911130651760182 4.7217E-11 1 11417 205.92 170.74 4 160240000 23447 28542 22846 29407 18839 23527 18259 25817 32126 11058 22184 26968 22989 30047 19360 23895 18994 26141 31111 11009 1 1 1 1 1 1 1 1 1 1 3637 1197 3209 3403 4033 4033 2090 RDSLEEGELR 10 Phospho (STY) _RDS(ph)LEEGELR_ RDS(1)LEEGELR RDS(117.77)LEEGELR 0 0 1 1 P21127;Q9UQ88 P21127 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 756.865783691406 2 642.285006 1282.55546 34794.412334469 1.8923 0.0012154 178400 114.58 178400 114.58 756.865981343736 41.464 0.45864 41.464 41.253 41.711 -7.1054E-15 35 15 3 0.631842714473614 0.000925515712760379 0.0184124934804091 0.00028438 1 9448 117.77 67.833 1 10714000 15106 19981 16080 23783 25032 17976 24950 20971 25118 25708 14298 18897 16245 24094 24873 18364 25406 21694 24777 24693 1 1 1 1 1 1 1 1 1 1 3638 449 3210 3404 4034 4034 730 RDSLTGSSDLYK 12 Phospho (STY) _RDS(ph)LTGSSDLYK_ RDS(1)LTGSSDLYK RDS(42.09)LT(-42.09)GS(-72.19)S(-84.35)DLY(-116.03)K 0 0 1 1 Q14671 Q14671 Q14671 PUM1 Pumilio homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.658813476563 3 474.548456 1420.62354 39585.0227419999 1.2185 0.00057824 321940 152.78 321940 152.78 627.325620405778 55.681 0.76296 55.681 55.393 56.156 -7.1054E-15 71 25 5 0.877448114522098 0.00378267096633138 0.0342996713024257 9.8388E-06 1 12983 136.7 90.377 5 44517000 22541 20947 20891 20516 21702 20991 26267 24036 23156 7062.5 21324 19785 21149 21100 22037 21071 26433 24205 22980 7206.5 1 1 1 1 1 1 1 1 1 1 3639 1015 3211 3405 4035 4035 1726 RDSLTGSSDLYKR 13 Phospho (STY) _RDS(ph)LTGSSDLYKR_ RDS(0.992)LT(0.007)GS(0.001)SDLYKR RDS(21.65)LT(-21.65)GS(-31.88)S(-39.5)DLY(-75.67)KR 0 0 1 2 Q14671 Q14671 Q14671 PUM1 Pumilio homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.360534667969 3 526.58216 1576.72465 37909.4100409068 0.35474 0.0001868 290130 152.78 290130 152.78 679.692018003823 47.347 0.33281 47.347 47.178 47.511 7.1054E-15 31 15 3 0.953796893250912 0.00110968064652322 0.00295211060732934 0.0014985 1 10937 99.127 79.079 5 92016000 36348 39634 36172 38934 46280 41009 59556 43601 37663 12691 34393 37437 36582 40052 46535 41069 59386 44017 38090 12959 1 1 1 1 1 1 1 1 1 1 3640 1015 3212 3406 4036 4036 1726 RDSPLQGSGQQNSQAGQR 18 Phospho (STY) _RDS(ph)PLQGSGQQNSQAGQR_ RDS(1)PLQGSGQQNSQAGQR RDS(98.25)PLQGS(-98.25)GQQNS(-158.46)QAGQR 0 0 1 1 O95819 O95819 O95819 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.021850585938 3 665.299374 1992.87629 36257.576740582 1.6853 0.0011213 114820 76.388 114820 76.389 742.020881553735 25.767 0.28543 25.767 25.588 25.873 0 26 9 4 0.955907554153754 0.00207210575736016 0.00564540835081001 7.831E-11 1 5753 184.93 168.99 3 12101000 2752.2 2708.6 2315.6 2305.2 3354.5 2706.7 2901 2263.9 3484 2223.4 2602.7 2556.4 2368.6 2398 3337 2693.8 2990.7 2355 3412.9 2146 1 1 1 1 1 1 1 1 1 1 3641 266 3213 3407 4037 4037 445 RDSPPPPAR 9 Phospho (STY) _RDS(ph)PPPPAR_ RDS(1)PPPPAR RDS(69.82)PPPPAR 0 0 1 1 O96013 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 434.557708740234 3 358.169362 1071.48626 48688.7630420708 0.65147 0.00023334 213280 76.389 213280 76.389 434.557391654691 23.529 0.78113 23.529 23.122 23.903 -3.5527E-15 60 26 4 0.890414712238082 0.00375806870983778 0.0769995838395424 0.011349 1 5281 69.815 34.493 1 3251300 3701.8 4952.7 4090.2 5368.9 5262.5 3776.1 4877.1 4710.5 5048.6 4632.8 3504.3 4681.1 4109.9 5461.6 5265.9 3876.5 4987.7 4828.3 4974.2 4471.4 1 1 1 1 1 1 1 1 1 1 3642 274 3214 3408 4038 4038 458 RDSQDGSSYR 10 Phospho (STY) _RDS(ph)QDGSSYR_ RDS(0.962)QDGS(0.016)S(0.021)Y(0.001)R RDS(16.68)QDGS(-17.89)S(-16.68)Y(-28.8)R 0 0 1 1 Q14847 Q14847 Q14847 LASP1 LIM and SH3 domain protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.326232910156 2 625.743506 1249.47246 37394.769159892 2.2652 0.0014174 183110 114.58 183110 114.58 740.32519351344 22.908 0.40216 22.908 22.805 23.207 0 22 13 3 0.935764178785246 0.000498080241588994 0.00441434598291245 0.043244 1 5157 55.314 33.683 4 1677900 1011.3 435.26 295.93 405.06 2746.1 381.96 2165.1 1634.7 224.05 1565.8 954.23 411 368.01 417.38 2632 402.54 2178.6 1638.4 303.4 1512.2 1 1 1 1 1 1 1 1 1 1 3643 1031 3215 3409 4039 4039 1771 RDSSDDWEIPDGQITVGQR 19 Phospho (STY) _RDS(ph)SDDWEIPDGQITVGQR_ RDS(0.938)S(0.062)DDWEIPDGQITVGQR RDS(11.81)S(-11.81)DDWEIPDGQIT(-115.78)VGQR 0 0 1 1 P15056 P15056 P15056 BRAF Serine/threonine-protein kinase B-raf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.388061523438 3 751.997249 2252.96992 33963.4111472008 1.9152 0.0014402 101580 76.387 101580 76.388 828.719045220201 72.907 0.78025 72.907 72.604 73.384 0 85 26 4 0.910277387711748 0.00101010573182741 0.0231490148928973 2.369E-07 2 17173 139.22 117 3 25986000 15571 12279 14437 15251 23334 14640 22238 17549 13087 50334 14730 11617 14709 15468 23130 14833 22438 19007 13301 47802 2 2 2 2 2 2 2 2 2 2 3644 394 3216 3410 4040;4041 4041 625 RDSVLAASR 9 Phospho (STY) _RDS(ph)VLAASR_ RDS(1)VLAASR RDS(68.59)VLAAS(-68.59)R 0 0 1 1 Q14643 Q14643 Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 428.560089111328 3 352.172884 1053.49682 NaN NaN NaN NaN NaN NaN NaN NaN 33.355 1 33.355 32.855 33.855 0 NaN NaN NaN 0.0005427 1 7465 121.45 84.467 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3645 1012 3217 3411 4042 4042 1719 RDSWSYINSK 10 Phospho (STY) _RDS(ph)WSYINSK_ RDS(0.98)WS(0.02)YINSK RDS(16.95)WS(-16.95)Y(-37.82)INS(-58.9)K 0 0 1 1 P13612 P13612 P13612 ITGA4 Integrin alpha-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.974365234375 3 445.862487 1334.56563 40189.3140824738 1.3386 0.00059682 342650 152.78 342650 152.78 598.638223799315 61.52 1.4562 61.52 61.218 62.674 0 169 49 5 0.980636859893058 0.0102961715868324 0.18304943374149 0.00023362 1 14387 110.77 84.483 4 267280000 26953 9175.8 32268 9961.8 71634 26490 78558 37266 10475 5310.2 25524 8672.5 32682 10446 70403 25960 77769 37123 13223 5862.6 1 1 1 1 1 1 1 1 1 1 3646 377 3218 3412 4043 4043 614 RDVYLSPR 8 Phospho (STY) _RDVYLS(ph)PR_ RDVYLS(1)PR RDVY(-54.33)LS(54.33)PR 0 0 1 1 Q96E39;P38159 Q96E39;P38159 P38159 RBMXL1;RBMX RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.841979980469 2 543.260606 1084.50666 38305.1344346135 2.0219 0.0010984 210910 114.58 210920 114.58 657.841686948473 42.389 0.65668 42.389 42.08 42.737 0 43 21 3 0.892330869001969 0.00186678285722635 0.0764238809055882 0.017874 1 9660 75.229 43.008 2 32716000 17015 20982 14778 21305 20125 17626 19174 21606 20665 6575.5 16092 19823 15073 21797 20095 17894 19604 21716 20327 6691.6 1 1 1 1 1 1 1 1 1 1 3647 561;1669 3219 3413 4044 4044 908 RDYDDMSPR 9 Oxidation (M),Phospho (STY) _RDYDDM(ox)S(ph)PR_ RDYDDM(1)SPR RDYDDMS(1)PR RDYDDM(87.15)SPR RDY(-67.16)DDMS(67.16)PR 0 1 1 1 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 494.210662841797 3 417.488432 1249.44347 44471.3722351723 0.66981 0.00027964 182970 76.388 182970 76.388 493.876330069766 25.136 1.7357 25.136 24.832 26.568 0 128 59 5 0.942278136895771 0.00733288639279276 0.0784658142451603 0.0039605 1 5599 87.149 69.013 2 26334000 5868.5 6035.2 5944.5 5528.1 4872.9 5516.3 5211.2 5155.6 4645.2 2326.4 5553.4 5698.4 5968.9 5706.9 5012.5 5529.6 5272.8 5255.5 4607.4 2309.9 1 1 1 1 1 1 1 1 1 1 3648 752 3220 3414 4045 4045 99 1238 RDYDDMSPR 9 Phospho (STY) _RDYDDMS(ph)PR_ RDYDDMS(1)PR RDY(-75.53)DDMS(75.53)PR 0 0 1 1 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 488.544342041016 3 412.156794 1233.44855 45431.6595523122 0.77202 0.00031819 185340 76.388 185340 76.388 488.544482587866 33.435 1.2306 33.435 33.082 34.313 0 114 42 4 0.555358624931602 0.00747261800773088 0.0219466260615241 0.0018804 2 7481 97.276 75.435 2 129670000 125710 75730 115230 80756 70392 121580 71639 86179 86412 8364.7 118910 71568 116080 83267 74113 119620 73267 88068 84636 9870.8 2 2 2 2 2 2 2 2 2 2 3649 752 3220 3415 4046;4047 4047 1238 RDYDDMSPR 9 Phospho (STY) _RDYDDMS(ph)PR_ RDYDDMS(1)PR RDY(-80.07)DDMS(80.07)PR 0 0 1 1 P61978 P61978 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.314453125 2 617.731552 1233.44855 NaN NaN NaN NaN NaN NaN NaN NaN 34.494 1 34.494 33.994 34.994 0 NaN NaN NaN 0.00096803 1 7733 108.98 72.3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3650 752 3220 3415 4048 4048 1238 REDSYHVR 8 Phospho (STY) _REDS(ph)YHVR_ REDS(1)YHVR REDS(55.01)Y(-55.01)HVR 0 0 1 1 P49760 P49760 P49760 CLK2 Dual specificity protein kinase CLK2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 457.552276611328 3 381.164388 1140.47134 46157.2076340292 0.15196 5.7923E-05 200410 76.388 200410 76.388 457.552255658631 25.445 0.491 25.445 25.24 25.731 0 43 16 4 0.792071174869511 0.00347801931115108 0.0468033674869019 0.0086494 1 5683 81.525 60.97 2 7029000 10045 8827.4 11333 8370.7 6745.5 10509 7217.2 7329.6 8430.8 3570 9510.3 8336.3 11282 8657 7124 10405 7357 7582.9 8267.2 3531.2 1 1 1 1 1 1 1 1 1 1 3651 652 3221 3416 4049 4049 1081 REGGDGEEQDVGDAGR 16 Unmodified _REGGDGEEQDVGDAGR_ 0 0 0 1 Q8N1G4 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.294372558594 3 549.571549 1645.69282 38960.1186835535 1.5429 0.00084791 138990 76.387 139000 76.388 625.958733251991 24.628 0.2606 24.628 24.481 24.742 0 21 8 3 0.958246822258058 0.000470867830675825 0.00564253179442342 0.011614 1 5519 81.692 63.328 1 6875400 1984.3 1434.6 1778 1970.5 1664 1575 1665 1915.1 1848.3 1618.9 1876.9 1358.2 1800.8 1984.2 1695.5 1603.7 1699.8 1956.6 1815.9 1568.7 1 1 1 1 1 1 1 1 1 1 3652 1457 3222 3417 4050 4050 RERNFEK 7 Unmodified _RERNFEK_ 0 0 0 2 O76021 O76021 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 359.963836669922 4 245.383346 977.504277 52097.0653512812 0.19329 4.7431E-05 466940 114.58 466940 114.58 359.963841120443 23.533 0.31791 23.533 23.353 23.671 0 30 10 4 0.654667362931982 0.00130087270213211 0.0174700391376233 0.054988 1 5282 13.267 4.3682 1 2358200 4001 4541.1 3838.2 3907.3 4331.6 5276.5 4019.2 4411 5045.1 8035.8 3785.4 4286.2 3879.7 4072.6 4363.1 5232 4134.3 4700.2 4934.5 7668.8 1 1 1 1 1 1 1 1 1 1 3653 210 3223 3418 4051 4051 RESCGSSVLTDFEGK 15 Phospho (STY) _RES(ph)CGSSVLTDFEGK_ RES(0.995)CGS(0.003)S(0.001)VLTDFEGK RES(24.8)CGS(-24.8)S(-28.29)VLT(-89.29)DFEGK 0 0 1 1 O15231 O15231 O15231 ZNF185 Zinc finger protein 185 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.692810058594 3 584.58172 1750.72333 35892.6868572377 2.4683 0.0014429 261340 152.78 261340 152.78 737.691489303187 73.882 0.74487 73.882 73.528 74.273 0 97 25 6 0.964152020816628 0.00422918846559467 0.0616684386684042 1.197E-15 1 17325 214.14 172.11 4 67163000 39033 6668 38635 7295.6 10512 37155 10910 19726 8051.6 10496 36934 6302.6 38582 7932.4 12331 35711 11008 20778 8065.7 10340 1 1 1 1 1 1 1 1 1 1 3654 84 3224 3419 4052 4052 147 RESCGSSVLTDFEGKDVATK 20 Phospho (STY) _RES(ph)CGSSVLTDFEGKDVATK_ RES(0.976)CGS(0.02)S(0.004)VLTDFEGKDVATK RES(16.88)CGS(-16.88)S(-23.95)VLT(-80.01)DFEGKDVAT(-137.72)K 0 0 1 2 O15231 O15231 O15231 ZNF185 Zinc finger protein 185 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.356628417969 4 567.256887 2264.99844 36306.5666140167 2.6642 0.0015113 302990 171.87 302990 171.87 739.380383174486 74.039 0.2877 74.039 73.839 74.127 0 25 9 4 0.799369730068013 0.0012971938072864 0.0172893138053583 1.2952E-07 1 17384 146.45 122.41 5 9194500 23594 7121 23121 7501.6 9767.6 23875 8582.3 12879 7948.9 11707 22324 6729.1 23143 7942.3 10683 23084 8775.6 13697 7870.1 11321 1 1 1 1 1 1 1 1 1 1 3655 84 3225 3420 4053 4053 147 RESLFSAR 8 Phospho (STY) _RES(ph)LFSAR_ RES(1)LFSAR RES(42.04)LFS(-42.04)AR 0 0 1 1 Q86VZ1 Q86VZ1 Q86VZ1 P2RY8 P2Y purinoceptor 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 637.827087402344 2 523.244956 1044.47536 38609.7510882995 2.0416 0.0010683 218980 114.58 218980 114.58 637.826187641791 49.203 0.68849 49.203 48.884 49.572 0 58 21 3 0.969284222630501 0.00354096031988993 0.126733346772425 0.0016626 2 11403 103.63 78.794 2 34393000 78032 26612 77553 32318 20517 80792 16662 36946 18052 18992 73837 25172 77413 33613 24135 78304 17184 39331 17753 18739 2 2 2 2 2 2 2 2 2 2 3656 1383 3226 3421 4054;4055 4055 2509 RESPSPAPK 9 Phospho (STY) _RES(ph)PSPAPK_ RES(0.999)PS(0.001)PAPK RES(28.8)PS(-28.8)PAPK 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 502.941375732422 3 350.165618 1047.47502 43701.5149137695 0.95358 0.00033391 436290 152.78 436300 152.78 502.941098315975 29.031 0.64955 29.031 28.751 29.401 0 70 21 4 0.897761274403098 0.00701995443724011 0.0866377430699128 0.00029656 1 6445 115.57 77.553 2 77673000 16871 19564 16829 19319 16266 18629 16987 18366 19898 2734.2 15964 18480 16943 19840 16553 18706 17336 18515 19510 2999.7 1 1 1 1 1 1 1 1 1 1 3657 1436 3227 3422 4056 4056 2627;2628 RESPSPAPKPR 11 Phospho (STY) _RES(ph)PSPAPKPR_ RES(0.835)PS(0.165)PAPKPR RES(7.05)PS(-7.05)PAPKPR 0 0 1 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 587.326049804688 3 434.550243 1300.6289 40909.020683691 1.2134 0.00052729 351570 152.78 351570 152.78 587.326138569752 26.9 0.90263 26.9 26.679 27.581 0 108 30 6 0.994140493985548 0.050013185744011 0.511011187643213 5.5787E-10 1 5975 180.11 144.45 2 1064500000 70960 84018 74647 81265 83039 74584 90044 80608 86600 5546.3 67160 79353 75069 83501 83869 75144 91226 80790 85594 7088.1 1 1 1 1 1 1 1 1 1 1 3658 1436 3228 3423 4057 4057 2627;2628 RESPSPAPKPR 11 2 Phospho (STY) _RES(ph)PS(ph)PAPKPR_ RES(1)PS(1)PAPKPR RES(55.19)PS(55.19)PAPKPR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.981628417969 3 461.205686 1380.59523 39496.7493900813 2.0093 0.00092671 331250 152.78 331250 152.78 613.980971047219 27.974 1.8978 27.974 27.293 29.191 3.5527E-15 240 65 5 0.715182706639766 0.00905373164089844 0.0893763244517425 0.028964 2 6336 55.186 27.321 1 116170000 34007 33699 36289 35025 35369 32510 41638 37585 37397 5817.2 32188 31842 36411 35841 36032 32774 41967 37680 37080 6347.5 2 2 2 2 2 2 2 2 2 2 3659 1436 3228 3424 4058;4059 4059 2627;2628 RESVNLGK 8 Phospho (STY) _RES(ph)VNLGK_ RES(1)VNLGK RES(66.33)VNLGK 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.938140869141 3 328.162096 981.46446 45821.9999667146 0.72777 0.00023883 465550 152.78 465550 152.78 480.937612821323 44.366 0.48451 44.366 44.111 44.596 0 46 16 4 0.727001886935824 0.00226177148870631 0.0235691499973345 0.014442 1 10182 66.326 39.62 1 36994000 40110 18858 43862 17315 19231 45014 18211 26898 21155 2020.1 37968 17806 43648 18318 20958 43660 18667 27744 20749 2524.7 1 1 1 1 1 1 1 1 1 1 3660 603 3229 3425 4060 4060 991 RFSDGAASIQAFK 13 Phospho (STY) _RFS(ph)DGAASIQAFK_ RFS(1)DGAASIQAFK RFS(55.06)DGAAS(-55.06)IQAFK 0 0 1 1 Q9Y2K2 Q9Y2K2 Q9Y2K2 SIK3 Serine/threonine-protein kinase SIK3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.008728027344 3 493.232691 1476.67624 38940.8895979309 2.4461 0.0012065 309740 152.77 309740 152.78 646.007615031654 75.191 0.51107 75.191 74.889 75.4 0 39 17 4 0.979109696740749 0.0015937086175855 0.0277581122155398 4.1552E-07 1 17635 155.49 131.11 2 7918100 5169.3 6061.6 6008.2 5996.4 6594.4 6707.4 5586.9 4777.8 5937.3 6701.9 4894.6 5725.8 6007 6172.3 6643.5 6679.8 5744.9 5069.2 5843.5 6421.2 1 1 1 1 1 1 1 1 1 1 3661 2249 3230 3426 4061 4061 4155 RFSEDSSTSK 10 Phospho (STY) _RFS(ph)EDSSTSK_ RFS(0.992)EDS(0.007)STSK RFS(21.23)EDS(-21.23)S(-35.71)T(-46.18)S(-56.61)K 0 0 1 1 Q14207 Q14207 Q14207 NPAT Protein NPAT MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 841.415161132813 2 612.250632 1222.48671 35110.7848916053 2.0597 0.001261 374300 229.16 374300 229.16 841.414251998818 37.844 0.35032 37.844 37.658 38.008 0 20 11 2 0.950892904358723 0.000618659749303864 0.0149673773624818 3.4177E-06 1 8567 147.73 124.3 5 11488000 13995 9930.8 13956 10113 19933 14275 21159 15362 10155 3506.6 13242 9382.3 14131 10440 19882 14143 21177 15472 10486 3657.4 1 1 1 1 1 1 1 1 1 1 3662 1002 3231 3427 4062 4062 1701 RFSFSQR 7 Phospho (STY) _RFS(ph)FSQR_ RFS(0.992)FS(0.008)QR RFS(20.9)FS(-20.9)QR 0 0 1 1 Q92614 Q92614 Q92614 MYO18A Unconventional myosin-XVIIIa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.808349609375 2 504.226566 1006.43858 39417.4963695597 0.57572 0.00029029 227240 114.58 227240 114.58 618.807679766642 51.739 0.57948 51.739 51.403 51.983 0 48 19 3 0.814294278832199 0.00133681950112535 0.0143955417064652 0.050211 1 12012 53.798 12.002 2 40467000 14164 36596 12321 37441 12093 12742 11638 20392 37332 5062.3 13396 34576 12509 37994 12303 13980 12572 20311 35745 5238.7 1 1 1 1 1 1 1 1 1 1 3663 1608 3232 3428 4063 4063 2959 RFSPPRR 7 Phospho (STY) _RFS(ph)PPRR_ RFS(1)PPRR RFS(81.26)PPRR 0 0 1 2 Q15287 Q15287 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 408.890686035156 3 332.502676 994.486198 48404.1185856807 0.086578 2.8787E-05 229740 76.388 229740 76.388 408.890592754395 32.634 2.9083 32.634 30.375 33.284 0 317 98 4 0.995503973088289 0.0614230612961701 0.492669782229878 0.013544 2 7259 81.263 55.527 1 563150000 161970 171650 164670 181470 149820 170500 153230 172910 194710 15204 153270 162210 165480 185550 153010 171450 156940 173810 190360 18319 2 2 2 2 2 2 2 2 2 2 3664 1067 3233 3429 4064;4065 4065 1842 RFSPPSSSLQPGK 13 Phospho (STY) _RFS(ph)PPSSSLQPGK_ RFS(1)PPSSSLQPGK RFS(34.23)PPS(-34.23)S(-53.96)S(-57.45)LQPGK 0 0 1 1 Q13950 Q13950 Q13950 RUNX2 Runt-related transcription factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.680969238281 3 489.904574 1466.69189 39176.8567073876 1.769 0.00086663 311850 152.77 311850 152.78 642.679800931111 58.805 0.99278 58.805 58.141 59.133 0 91 33 4 0.985324760351037 0.00164370157147205 0.0200818029092299 4.9573E-05 1 13744 129.43 102.09 4 14876000 17392 5235.4 16737 6398.2 6122.8 16885 6020.9 9704.3 5831 6232.3 16455 4952.3 16760 6667 6838.5 16378 6128.4 10200 5761.5 6093.1 1 1 1 1 1 1 1 1 1 1 3665 983 3234 3430 4066 4066 1659 RFSRSPIR 8 2 Phospho (STY) _RFS(ph)RS(ph)PIR_ RFS(1)RS(1)PIR RFS(45.08)RS(45.08)PIR 0 0 2 2 P18583 P18583 P18583 SON Protein SON MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 469.900848388672 3 393.512562 1177.51586 45508.3381287892 0.11014 4.334E-05 194120 76.388 194120 76.388 469.900467540369 35.276 1.2826 35.276 34.774 36.056 0 137 43 4 0.980324662465081 0.0017747160040408 0.0126068161580722 0.044594 1 7864 45.077 18.405 1 67944000 11590 13835 12252 14831 12326 11304 13952 12661 14587 2169.2 10970 13075 12303 15110 12528 11510 14141 12713 14366 2335.6 1 1 1 1 1 1 1 1 1 1 3666 428 3235 3431 4067 4067 690;691 RFSVVDMAALGGVLGALLLLALLGLAVLVHK 31 Unmodified _RFSVVDMAALGGVLGALLLLALLGLAVLVHK_ 0 0 0 1 Q9HBB8 Q9HBB8 Q9HBB8 CDHR5 Cadherin-related family member 5 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1794.61401367188 2 1565.45105 3128.88755 NaN NaN NaN NaN NaN NaN NaN NaN 21.606 1 21.606 21.106 22.106 0 NaN NaN NaN 0.05326 1 4879 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3667 1979 3236 3432 4068 4068 RFTPPSTALSPGK 13 Phospho (STY) _RFTPPSTALS(ph)PGK_ RFTPPST(0.001)ALS(0.999)PGK RFT(-50.91)PPS(-39.86)T(-32.97)ALS(32.97)PGK 0 0 1 1 Q01196 Q01196 Q01196 RUNX1 Runt-related transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.3515625 3 480.241186 1437.70173 40128.5529668056 1.5413 0.00074021 318120 152.78 318120 152.78 633.35085591279 60.75 0.69555 60.75 60.429 61.124 0 64 23 4 0.932190902663929 0.00456737254184993 0.0555164151035893 0.00035039 1 14225 100.97 79.715 4 39594000 10394 10433 12212 10268 13897 11564 17189 14640 11495 4709.4 9842.4 9855.2 12220 10574 14045 11581 17183 14708 11584 4773.3 1 1 1 1 1 1 1 1 1 1 3668 834 3237 3433 4069 4069 1346;4506 RFTPPSTALSPGK 13 Phospho (STY) _RFT(ph)PPSTALSPGK_ RFT(0.997)PPS(0.002)TALSPGK RFT(26.5)PPS(-26.5)T(-34.04)ALS(-70.39)PGK 0 0 1 1 Q01196 Q01196 Q01196 RUNX1 Runt-related transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.017700195313 3 480.241186 1437.70173 38857.4490685659 1.7266 0.00082919 318120 152.78 318120 152.78 633.016605739249 64.317 1.5087 64.317 63.285 64.794 0 162 51 4 0.717831143452226 0.00170108833391509 0.0302973270461466 0.00051246 2 15191 106.13 78.268 4 63499000 18375 15534 18442 14834 27111 20227 27227 20514 15733 7670 17388 14670 18672 15361 26991 20052 27395 20797 16011 7697 2 2 2 2 2 2 2 2 2 2 3669 834 3237 3433 4070;4071 4071 1346;4506 RFTPPSTALSPGK 13 2 Phospho (STY) _RFT(ph)PPSTALS(ph)PGK_ RFT(0.999)PPS(0.003)T(0.009)ALS(0.989)PGK RFT(30.31)PPS(-26)T(-20.77)ALS(20.77)PGK 0 0 2 1 Q01196 Q01196 Q01196 RUNX1 Runt-related transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.007446289063 3 506.89663 1517.66806 37214.2391432231 1.5955 0.00080877 301390 152.78 301400 152.78 660.006387688871 65.712 1.4653 65.712 64.851 66.316 0 108 49 3 0.669028993751363 0.0018199793134436 0.0534501527345247 0.010858 2 15318 75.533 55.778 6 42241000 19704 18840 21868 19421 26117 22170 27530 22288 21912 10937 18653 17801 21950 19950 26267 22122 27802 22682 21859 10814 2 2 2 2 2 2 2 2 2 2 3670 834 3237 3434 4072;4073 4072 1346;4506 RFVSEGDGGR 10 Phospho (STY) _RFVS(ph)EGDGGR_ RFVS(1)EGDGGR RFVS(132.09)EGDGGR 0 0 1 1 Q53EL6 Q53EL6 Q53EL6 PDCD4 Programmed cell death protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 463.555389404297 3 387.16791 1158.4819 45447.4631350425 -0.071905 -2.7839E-05 197300 76.388 197300 76.388 463.555836287529 35.573 0.5804 35.573 35.269 35.85 0 42 19 3 0.835327543299782 0.00196691841890644 0.0397567749070502 5.7325E-05 1 7982 132.09 110.94 1 18452000 20367 17154 21442 16527 18802 24152 19306 18957 18157 2696 19276 16202 21498 17130 19243 23809 19596 19298 17965 2977.3 1 1 1 1 1 1 1 1 1 1 3671 1145 3238 3435 4074 4074 1990 RGAPSSPATGVLPSPQGK 18 Phospho (STY) _RGAPS(ph)SPATGVLPSPQGK_ RGAPS(0.624)S(0.375)PAT(0.001)GVLPSPQGK RGAPS(2.21)S(-2.21)PAT(-27.17)GVLPS(-72.66)PQGK 0 0 1 1 Q5SRE5 Q5SRE5 Q5SRE5 NUP188 Nucleoporin NUP188 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.075134277344 3 596.299764 1785.87746 36813.9626092389 1.9226 0.0011465 256200 152.77 256210 152.78 749.408835773132 54.088 0.7036 54.088 53.656 54.36 0 65 23 4 0.76088040625303 0.00245478506143682 0.0387916119338151 2.0989E-05 1 12603 129.07 80.245 4 17798000 13353 14320 12492 14552 12169 13620 10358 13264 13968 9496.5 12632 13529 12620 14912 12346 13707 10730 13605 13629 9249.1 1 1 1 1 1 1 1 1 1 1 3672 1178 3239 3436 4075 4075 2040;2041 RGASGEK 7 Phospho (STY) _RGAS(ph)GEK_ RGAS(1)GEK RGAS(50.98)GEK 0 0 1 1 REV__O43242 REV__O43242 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 621.83447265625 2 392.671092 783.327632 39838.8715673988 2.4647 0.00096783 583600 229.16 583600 229.16 621.834070692807 22.767 0.60552 22.767 22.602 23.207 0 56 20 5 0.970232855555879 0.00798283242748052 0.0923490347326795 0.056604 1 5107 50.978 12.702 1 41257000 10103 15262 10263 15531 13356 10851 15470 14162 15800 4501.2 9560.5 14419 10367 15855 13401 11136 15655 14213 15576 4566.1 1 1 1 1 1 1 1 1 1 1 + 3673 2323 3240 3437 4076 4076 4279 RGCSPPAPAGSPR 13 Phospho (STY) _RGCS(ph)PPAPAGSPR_ RGCS(1)PPAPAGSPR RGCS(43.14)PPAPAGS(-43.14)PR 0 0 1 1 Q9C073 Q9C073 Q9C073 FAM117A Protein FAM117A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.262329101563 3 463.874621 1388.60203 41648.0688939703 0.69788 0.00032373 164670 76.388 164670 76.388 540.262166087312 27.214 0.58045 27.214 26.886 27.466 -3.5527E-15 39 19 3 0.86377299506531 0.00143969906312708 0.0121173340092837 0.042311 1 6043 47.942 25.468 2 9866000 5898.3 5627.7 5942.9 5338.6 6138.5 5336.9 7028 5965.1 6127.5 2041.3 5581.5 5314.7 5985.7 5499.1 6229.5 5361.3 7086.5 6020.6 6084.2 2060.2 1 1 1 1 1 1 1 1 1 1 3674 1882 3241 3438 4077 4077 3422 RGEGDAPFSEPGTTSTQRPSSPETATK 27 Phospho (STY) _RGEGDAPFSEPGTTSTQRPSS(ph)PETATK_ RGEGDAPFSEPGT(0.038)T(0.038)S(0.008)T(0.006)QRPS(0.114)S(0.794)PET(0.001)ATK RGEGDAPFS(-34.3)EPGT(-13.18)T(-13.18)S(-19.71)T(-21.46)QRPS(-8.43)S(8.43)PET(-31.25)AT(-51.6)K 0 0 1 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1110.87524414063 3 957.764601 2870.27197 30012.8555548787 1.721 0.0016483 159510 152.78 159520 152.78 1110.87510369906 46.18 0.44521 46.18 45.961 46.406 0 60 14 5 0.804448261729095 0.00363457758660534 0.102841421685197 1.218E-11 1 10650 187.32 155.16 9 32384000 16357 19341 17108 17993 33643 18254 35329 27608 24240 18026 15480 18263 17389 18561 33178 18436 35577 27873 24388 17612 1 1 1 1 1 1 1 1 1 1 3675 2226 3242 3439 4078 4078 4048 RGFSDSGGGPPAK 13 Phospho (STY) _RGFS(ph)DSGGGPPAK_ RGFS(0.995)DS(0.005)GGGPPAK RGFS(23.21)DS(-23.21)GGGPPAK 0 0 1 1 Q9H307 Q9H307 Q9H307 PNN Pinin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.970336914063 3 438.194236 1311.56088 40380.6134514065 1.5885 0.00069605 348650 152.78 348650 152.78 590.969438815502 42.931 0.95524 42.931 42.482 43.437 0 117 32 5 0.908117728577283 0.00395586455817855 0.0336040958231296 6.7377E-07 1 9762 142.72 108.34 2 186270000 20137 16875 19256 16761 33299 21179 32877 21472 16573 3274.4 19051 15941 19612 17287 32942 21041 33040 21626 17044 3580.1 1 1 1 1 1 1 1 1 1 1 3676 1926 3243 3440 4079 4079 3494 RGGSTVPK 8 Phospho (STY) _RGGST(ph)VPK_ RGGS(0.436)T(0.564)VPK RGGS(-1.12)T(1.12)VPK 0 0 1 1 Q92504 Q92504 Q92504 SLC39A7 Zinc transporter SLC39A7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 447.254943847656 3 294.479537 880.416781 46163.3253427866 1.2726 0.00037474 518800 152.77 518800 152.77 447.254160490112 30.723 0.59503 30.723 30.495 31.09 0 30 19 2 0.736554379481716 0.00217761506458696 0.07245502850639 0.041344 1 6867 67.726 33.339 2 11094000 20005 21811 17801 22620 16098 21494 15124 18677 22400 2331.1 18921 20609 18029 23158 16430 21564 15641 18914 21793 2627.3 1 1 1 1 1 1 1 1 1 1 3677 1591 3244 3441 4080 4080 2922;4708 RGNDPLTSSPGR 12 Phospho (STY) _RGNDPLTSS(ph)PGR_ RGNDPLTS(0.013)S(0.987)PGR RGNDPLT(-43.43)S(-18.88)S(18.88)PGR 0 0 1 1 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.385925292969 2 668.803897 1335.59324 35410.4683448665 1.3275 0.00088781 171320 114.58 171320 114.58 783.384871241115 33.412 0.96595 33.412 32.939 33.905 0 108 33 4 0.988924411821863 0.0021920006429765 0.0731899225892207 6.0329E-11 1 7409 198.29 156.69 3 257610000 10572 9249.4 10678 9407.8 12336 10992 9498.1 11468 10976 5159.6 10004 8738.5 10761 9675.4 12382 10963 9845 11640 10767 5123.7 1 1 1 1 1 1 1 1 1 1 3678 647 3245 3442 4081 4081 1071;1072 RGPDRGSPEYR 11 Phospho (STY) _RGPDRGS(ph)PEYR_ RGPDRGS(1)PEYR RGPDRGS(50.22)PEY(-50.22)R 0 0 1 2 P49716 P49716 P49716 CEBPD CCAAT/enhancer-binding protein delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.593322753906 3 457.205135 1368.59358 44053.8246203405 1.2785 0.00058452 167080 76.388 167080 76.388 533.592763375595 23.513 0.40525 23.513 23.324 23.729 0 35 13 4 0.603389901905726 0.00314334719060701 0.0661750229444905 0.026729 1 5280 60.55 39.49 2 4580600 5953.1 2144.9 4995.1 3099.4 1654.6 4563.7 2346.7 3204.3 2557.1 2112.6 5629.6 2031.7 5045.2 3147.6 1886.3 4496 2361.3 3330.5 2514.2 2063.4 1 1 1 1 1 1 1 1 1 1 3679 646 3246 3443 4082 4082 1067 RGQSFYVQIDFSR 13 2 Phospho (STY) _RGQS(ph)FY(ph)VQIDFSR_ RGQS(1)FY(1)VQIDFSR RGQS(39.77)FY(39.63)VQIDFS(-39.63)R 0 0 2 1 P00488 P00488 P00488 F13A1 Coagulation factor XIII A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 996.453247070313 2 881.871127 1761.7277 30978.6818337462 2.0077 0.0017705 129930 114.58 129930 114.58 996.451866620184 100.46 0.19532 100.46 100.37 100.56 0 22 6 5 0.817893323500186 0.00320287178332961 0.0703417882079531 0.052916 1 23487 46.158 10.72 3 77953000 4783.8 7263.7 6062.9 6778.2 6912.7 6706.5 6604.7 7928.2 6974.6 49740 4531.5 6859 6041.2 6988.1 6960.8 6834.5 6747.9 9404 6866.2 47019 1 1 1 1 1 1 1 1 1 1 3680 280 3247 3444 4083 4083 463;4865 RGQSSPPPAPPICLR 15 Phospho (STY) _RGQS(ph)SPPPAPPICLR_ RGQS(0.739)S(0.261)PPPAPPICLR RGQS(4.51)S(-4.51)PPPAPPICLR 0 0 1 1 O43379 O43379 O43379 WDR62 WD repeat-containing protein 62 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.339050292969 3 571.614918 1711.82292 39817.0413183877 1.2869 0.0007356 133640 76.388 133640 76.389 648.337316665824 55.926 1.1203 55.926 55.364 56.484 7.1054E-15 109 37 4 0.873002294777937 0.00229575606341282 0.0349659935157459 0.0091855 1 13027 79.863 50.589 2 27573000 11241 10893 11208 9511.4 8717.6 13278 9892.1 9296.7 11312 8784.2 10637 10282 11260 9910.9 9011.6 13108 10052 9744.3 11102 8486.5 1 1 1 1 1 1 1 1 1 1 3681 108 3248 3445 4084 4084 181;182 RGSAVATSHFEVGNTCPSEFPSK 23 Phospho (STY) _RGS(ph)AVATSHFEVGNTCPSEFPSK_ RGS(0.716)AVAT(0.142)S(0.142)HFEVGNTCPSEFPSK RGS(7.02)AVAT(-7.02)S(-7.02)HFEVGNT(-35.49)CPS(-62.39)EFPS(-85.92)K 0 0 1 1 Q92576 Q92576 Q92576 PHF3 PHD finger protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.119689941406 4 637.034889 2544.11045 35769.1231712906 1.2466 0.00079413 179870 114.58 179870 114.58 751.868047431426 62.415 0.69285 62.415 62.152 62.845 0 59 16 5 0.974684715231136 0.00244143404635877 0.0741410380869243 0.0050789 1 14629 88.395 69.992 6 21890000 10856 10016 12246 8923 9896.2 12804 10165 11971 10654 35810 10278 9455.1 12222 9290.9 10186 12718 10348 13119 10492 33997 1 1 1 1 1 1 1 1 1 1 3682 1602 3249 3446 4085 4085 2944 RGSFSSENYWR 11 Phospho (STY) _RGS(ph)FSSENYWR_ RGS(1)FSSENYWR RGS(33.97)FS(-33.97)S(-65.76)ENY(-135.76)WR 0 0 1 1 Q6P6C2 Q6P6C2 Q6P6C2 ALKBH5 RNA demethylase ALKBH5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 566.593627929688 3 490.205024 1467.59324 42284.0591978598 1.073 0.00052598 155830 76.388 155830 76.388 566.592673984908 57.877 0.72724 57.877 57.534 58.262 0 86 24 5 0.821382702943898 0.00339630006474037 0.0848642429597252 1.0403E-07 1 13505 172.06 141.58 4 82498000 8897.9 7236.4 9993.4 8054.3 8470.1 10477 8906.6 9120.9 8825.9 2502.8 8423.8 6840.7 9981.9 8258.9 8691.5 10381 9043 9276.9 8711.9 2567.8 1 1 1 1 1 1 1 1 1 1 3683 1263 3250 3447 4086 4086 2239 RGSGDTSSLIDPDTSLSELR 20 Phospho (STY) _RGS(ph)GDTSSLIDPDTSLSELR_ RGS(0.985)GDT(0.015)SSLIDPDTSLSELR RGS(18.09)GDT(-18.09)S(-42.77)S(-58.88)LIDPDT(-131.33)S(-136.2)LS(-140.83)ELR 0 0 1 1 Q9Y608 Q9Y608 Q9Y608 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.06005859375 3 729.337272 2184.98999 34677.4615849384 1.776 0.0012953 104740 76.387 104740 76.389 805.724104263913 76.729 1.186 76.729 76.359 77.545 0 120 40 4 0.90458317841705 0.00662895492792597 0.105785132182094 6.0039E-08 1 17977 164.12 135 7 36392000 5526 7010.4 6001.4 6815 9731.1 7763.1 9697.5 8821.8 7424.6 9511.8 5230.8 6621.3 6061.3 7024.5 9652.3 7770.2 9810.6 9094.5 7422.3 9160.6 1 1 1 1 1 1 1 1 1 1 3684 2304 3251 3448 4087 4087 4247 RGSGLGK 7 Phospho (STY) _RGS(ph)GLGK_ RGS(1)GLGK RGS(62.63)GLGK 0 0 1 1 Q14669 Q14669 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 404.899749755859 3 252.125094 753.353453 49521.9385382079 0.069692 1.7571E-05 605950 152.78 605950 152.78 404.900143967614 32.58 0.70202 32.58 32.237 32.939 0 59 23 4 0.984578548677634 0.0014281330617263 0.00999319819951584 0.018659 1 7257 62.633 27.83 1 11506000 28688 10026 28476 10531 33464 29667 32156 24010 11224 2564.6 27146 9474.4 28744 11089 33627 28817 32222 24381 11963 2970.6 1 1 1 1 1 1 1 1 1 1 3685 1014 3252 3449 4088 4088 1722 RGSLPDTQPSQGPSTPK 17 Phospho (STY) _RGS(ph)LPDTQPSQGPSTPK_ RGS(0.999)LPDT(0.001)QPSQGPSTPK RGS(31.95)LPDT(-31.95)QPS(-63.35)QGPS(-154.93)T(-171.71)PK 0 0 1 1 Q86Y91 Q86Y91 Q86Y91 KIF18B Kinesin-like protein KIF18B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.735412597656 3 611.622795 1831.84656 36387.4032091537 1.8657 0.0011411 249790 152.78 249790 152.78 764.399840463094 42.726 0.42958 42.726 42.453 42.883 0 24 14 2 0.84593400246541 0.00211922160347347 0.0175009578702363 3.1008E-11 1 9764 205.13 183.9 5 26320000 20319 15484 23563 14395 15749 20158 17271 18474 17248 6461.3 19239 14621 23448 14940 16465 19939 17507 18790 17019 6511.7 1 1 1 1 1 1 1 1 1 1 3686 1400 3253 3450 4089 4089 2541 RGSLSNAGDPEIVK 14 Phospho (STY) _RGS(ph)LSNAGDPEIVK_ RGS(0.999)LS(0.001)NAGDPEIVK RGS(29.91)LS(-29.91)NAGDPEIVK 0 0 1 1 O43847 O43847 O43847 NRD1 Nardilysin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.023559570313 3 508.246889 1521.71884 38081.8551447868 2.554 0.0012981 300590 152.78 300600 152.78 661.0223009409 53.636 0.82463 53.636 53.294 54.119 0 107 27 6 0.995161935711285 0.00763515408139767 0.0539193566439289 1.733E-10 1 12463 186.06 132.28 2 293990000 27518 34720 25650 33038 38284 23942 40693 34730 38154 7000.7 26032 32789 26095 33879 38137 24553 41236 34630 37754 7395.7 1 1 1 1 1 1 1 1 1 1 3687 131 3254 3451 4090 4090 228 RGSLSQEMAK 10 Phospho (STY) _RGS(ph)LSQEMAK_ RGS(0.988)LS(0.012)QEMAK RGS(19.31)LS(-19.31)QEMAK 0 0 1 1 Q8NFC6 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.95703125 3 396.181051 1185.52132 44205.4129282572 0.67709 0.00026825 385620 152.78 385620 152.78 548.956968382838 45.566 0.35379 45.566 45.466 45.819 0 18 11 2 0.87207318408819 0.000519619973236068 0.00732662548180972 0.00021195 1 10538 113.4 84.096 2 17632000 10823 9151.4 11478 9567 12120 11867 10883 9709.5 9151.4 2356.6 10244 8647.3 11526 9834.7 12242 11770 11090 9893.9 9103.1 2443.7 1 1 1 1 1 1 1 1 1 1 3688 1521 3255 3452 4091 4091 2797 RGSNVALMLDVR 12 Oxidation (M),Phospho (STY) _RGS(ph)NVALM(ox)LDVR_ RGSNVALM(1)LDVR RGS(1)NVALMLDVR RGSNVALM(55.1)LDVR RGS(55.1)NVALMLDVR 0 1 1 1 P35236 P35236 P35236 PTPN7 Tyrosine-protein phosphatase non-receptor type 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.431579589844 2 713.847251 1425.67995 34563.311684991 1.8496 0.0013203 160510 114.58 160520 114.58 828.430118807845 59.506 0.68841 59.506 59.278 59.967 7.1054E-15 51 23 3 0.825427150870018 0.000905736644427644 0.0166586550860389 0.033731 1 13977 55.097 27.719 1 22292000 22246 15485 20718 14675 18221 21062 19630 22824 14985 55409 21044 14624 20922 15220 18654 20953 19787 24496 14983 52702 1 1 1 1 1 1 1 1 1 1 3689 543 3256 3453 4092 4092 72 877 RGSNVALMLDVR 12 Phospho (STY) _RGS(ph)NVALMLDVR_ RGS(1)NVALMLDVR RGS(148.51)NVALMLDVR 0 0 1 1 P35236 P35236 P35236 PTPN7 Tyrosine-protein phosphatase non-receptor type 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.290405273438 3 470.902288 1409.68503 42051.4802527016 1.3725 0.00064632 162210 76.387 162220 76.388 547.289960795029 72.51 1.569 72.51 72.105 73.674 0 162 53 5 0.974582892518719 0.00343749125093611 0.0216611303312579 3.4315E-07 2 16970 148.51 110.83 1 144650000 9492.8 5615.3 10256 7231.1 8985.7 10711 7951.6 6765.3 5288.9 4864.7 8985.5 5313.8 10266 7382 9176.6 10541 8070.8 7085.6 5331.5 4737.3 2 2 2 2 2 2 2 2 2 2 3690 543 3256 3454 4093;4094 4093 877 RGSPTTGFIEQK 12 Phospho (STY) _RGS(ph)PTTGFIEQK_ RGS(0.988)PT(0.012)TGFIEQK RGS(19.12)PT(-19.12)T(-50.77)GFIEQK 0 0 1 1 Q6ZRV2 Q6ZRV2 Q6ZRV2 FAM83H Protein FAM83H MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.332275390625 3 467.557175 1399.64969 39666.7000701204 0.89708 0.00041944 326750 152.78 326750 152.78 620.332640909538 54.828 0.48952 54.828 54.526 55.016 0 50 16 4 0.825327100809879 0.00184127907921422 0.0169802393100568 7.2337E-08 1 12796 170.23 122.52 3 18967000 10729 21518 10198 22578 11654 10381 10774 15997 24086 5618.9 10150 20333 10315 22922 11741 11031 11374 15997 23201 5661.1 1 1 1 1 1 1 1 1 1 1 3691 1296 3257 3455 4095 4095 2315 RGSQVGHK 8 Phospho (STY) _RGS(ph)QVGHK_ RGS(1)QVGHK RGS(97.44)QVGHK 0 0 1 1 Q5JTH9 Q5JTH9 Q5JTH9 RRP12 RRP12-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 469.59423828125 3 316.818553 947.433828 44275.105885109 0.73133 0.0002317 482220 152.78 482220 152.78 469.593719013883 23.573 0.4925 23.573 23.295 23.787 0 38 12 4 0.926016968932977 0.0175834464009146 0.342163991109049 0.0025841 1 5279 97.439 67.185 1 18102000 12179 12933 10344 11093 10474 10608 10557 13070 12838 2523.2 11518 12207 10523 11494 10625 10690 10804 13091 12571 2678.4 1 1 1 1 1 1 1 1 1 1 3692 1171 3258 3456 4096 4096 2027 RGSRSSPEPK 10 2 Phospho (STY) _RGS(ph)RS(ph)SPEPK_ RGS(0.892)RS(0.598)S(0.511)PEPK RGS(6.54)RS(0.85)S(-0.85)PEPK 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 573.618896484375 3 420.842637 1259.50608 40812.1940085593 1.7241 0.00072558 363020 152.78 363020 152.78 573.618036095021 24.735 2.5131 24.735 24.165 26.679 0 267 86 4 0.974912010709771 0.00763667138763816 0.0595272843981944 0.013612 2 5620 65.374 37.965 3 50802000 19278 16937 16629 16146 11395 19757 13580 16590 18189 5156.6 18232 15995 16836 16685 11908 19613 13844 16919 17751 5239.5 2 2 2 2 2 2 2 2 2 2 3693 2226 3259 3457 4097;4098 4097 4066;4067 RGSSGSVDETLFALPAASEPVIR 23 Phospho (STY) _RGS(ph)SGSVDETLFALPAASEPVIR_ RGS(0.897)S(0.087)GS(0.015)VDET(0.001)LFALPAASEPVIR RGS(10.11)S(-10.11)GS(-17.85)VDET(-29.68)LFALPAAS(-131.18)EPVIR 0 0 1 1 Q9NQC3 Q9NQC3 Q9NQC3 RTN4 Reticulon-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.459350585938 3 813.735366 2438.18427 33233.3177670602 1.7649 0.0014361 93873 76.388 93875 76.389 890.458524226354 93.815 0.86778 93.815 93.534 94.402 0 78 29 4 0.99368987899485 0.00800029444958763 0.252454808967288 2.3687E-09 1 21833 175.02 158.05 5 44377000 4244.8 7477.9 3988.5 7173.9 5122.4 4683 4402.5 6157.6 7058.3 28443 4015.7 7062.4 4043.5 7344.4 5123.6 4877.2 4588.6 6976.5 6851.8 26925 1 1 1 1 1 1 1 1 1 1 3694 2003 3260 3458 4099 4099 3635;3636 RHESKDK 7 Phospho (STY) _RHES(ph)KDK_ RHES(1)KDK RHES(65.5)KDK 0 0 1 2 Q7L4I2 Q7L4I2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 417.487121582031 4 245.614379 978.428409 47697.7600894543 0.43226 0.00010617 699770 171.87 699770 171.87 417.48858595136 23.502 1.3034 23.502 22.92 24.224 0 77 44 3 0.7963318060447 0.0048120316596614 0.108757242399185 0.014003 2 5257 65.5 30.613 1 6474600 18465 23581 17371 23716 21326 17830 20959 20957 24659 17148 17468 22277 17602 24248 21406 18206 21454 21417 24174 16632 2 2 2 2 2 2 2 2 2 2 3695 1318 3261 3459 4100;4101 4100 2364 RHSDENDGGQPHK 13 Phospho (STY) _RHS(ph)DENDGGQPHK_ RHS(1)DENDGGQPHK RHS(103.87)DENDGGQPHK 0 0 1 1 Q09161 Q09161 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 504.744384765625 4 389.911401 1555.6165 44340.8358772368 1.416 0.00055212 293870 114.58 293870 114.58 504.743403531476 21.839 1.1791 21.839 21.51 22.689 0 123 40 5 0.938987241667575 0.00665787847703578 0.0977510654563392 0.00016055 2 4894 103.87 75.362 1 5474300 4297.5 4148.7 5817.3 4336.8 3654.5 5548.4 3447.9 4651.7 5431.1 7094 4072.2 3920.2 5743.4 4460.9 3835.3 5509.5 3573.9 4914.5 5274.8 6787.5 2 2 2 2 2 2 2 2 2 2 3696 893 3262 3460 4102;4103 4102 1455 RHSEVETDSK 10 Phospho (STY) _RHS(ph)EVETDSK_ RHS(1)EVETDSK RHS(71.74)EVET(-71.74)DS(-108.32)K 0 0 1 1 Q9NX58 Q9NX58 Q9NX58 LYAR Cell growth-regulating nucleolar protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 575.957885742188 3 423.181996 1266.52416 41049.4092044882 1.709 0.0007232 361020 152.78 361020 152.78 575.957192838873 24.816 0.58414 24.816 24.597 25.181 0 67 16 5 0.99297778910782 0.0455131192188884 0.675172101266337 1.3504E-10 1 5540 210.02 171.86 3 103740000 21648 30486 21016 29178 43288 20239 46778 33163 29317 5989.5 20483 28792 21477 29895 42647 20859 46970 32945 29667 6407.3 1 1 1 1 1 1 1 1 1 1 3697 2061 3263 3461 4104 4104 3728 RHSEVETDSKK 11 Phospho (STY) _RHS(ph)EVETDSKK_ RHS(1)EVETDSKK RHS(100.18)EVET(-100.18)DS(-129.84)KK 0 0 1 2 Q9NX58 Q9NX58 Q9NX58 LYAR Cell growth-regulating nucleolar protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 521.535339355469 4 349.662057 1394.61912 43476.0053283887 0.65789 0.00023004 491540 171.87 491540 171.87 521.534940505391 27.058 0.49476 27.058 26.886 27.38 3.5527E-15 48 16 4 0.96378204867669 0.00389102871667025 0.029510897756535 1.0394E-07 1 6024 171.46 146.1 3 25073000 7783.1 12165 9854.9 11777 14087 8213 17516 11043 11815 3212.7 7372.5 11490 9862.5 12059 14089 8432.9 17509 11064 11899 3280.7 1 1 1 1 1 1 1 1 1 1 3698 2061 3264 3462 4105 4105 3728 RHSPSPRPR 9 2 Phospho (STY) _RHS(ph)PS(ph)PRPR_ RHS(1)PS(1)PRPR RHS(41.54)PS(41.54)PRPR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 493.572021484375 3 417.183216 1248.52782 45164.1869733739 1.1653 0.00048613 183100 76.388 183100 76.388 493.570817947142 10.21 0.78978 10.21 9.9954 10.785 -1.7764E-15 179 109 4 0.929068466841556 0.00390041586840675 0.0435660483425294 0.048558 1 2345 41.54 26.275 1 2829100 0 0 0 0 0 0 0 82.336 0 4116.6 0 0 0 0 0 0 0 203.44 0 3878.2 0 0 0 0 0 0 0 1 0 1 3699 1436 3265 3463 4106 4106 2645;2646 RHSPSPRPR 9 2 Phospho (STY) _RHS(ph)PS(ph)PRPR_ RHS(1)PS(1)PRPR RHS(60.3)PS(60.3)PRPR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 493.571533203125 3 417.183216 1248.52782 44370.2810203595 1.1889 0.000496 183100 76.388 183100 76.388 493.570991538645 18.65 3.4148 18.65 17.728 21.143 0 408 125 4 0.997116284815408 0.0478142413667358 0.552274893582403 0.019684 3 4288 60.301 25.927 1 7679400 1070.8 1520.3 1594.9 1991.3 1873.1 1126.9 1199.9 2370.4 2586.6 17651 1013 1438.9 1577.9 2002 1876.2 1217 1291.7 2861.3 2493.4 16675 2 3 3 3 3 3 3 3 3 3 3700 1436 3265 3463 4107;4108;4109 4107 2645;2646 RHSVTLPSSK 10 Phospho (STY) _RHS(ph)VTLPSSK_ RHS(0.989)VT(0.011)LPSSK RHS(19.46)VT(-19.46)LPS(-49.12)S(-50.68)K 0 0 1 1 Q07352 Q07352 Q07352 ZFP36L1 Zinc finger protein 36, C3H1 type-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 550.643310546875 3 397.867572 1190.58089 41999.8454397391 1.9083 0.00075923 383980 152.77 383990 152.78 550.642916320387 38.687 0.35054 38.687 38.524 38.875 0 26 11 3 0.755108222022175 0.000684746353637843 0.0090149135621128 0.019807 1 8793 59.864 35.483 4 8035100 9707.4 12219 10006 12419 11611 11564 12430 12036 13275 2602.5 9186.8 11544 10080 12725 11701 11640 12636 12133 13063 2729.1 1 1 1 1 1 1 1 1 1 1 3701 881 3266 3464 4110 4110 1426 RHSVVAGGGGGEGR 14 Phospho (STY) _RHS(ph)VVAGGGGGEGR_ RHS(1)VVAGGGGGEGR RHS(153.36)VVAGGGGGEGR 0 0 1 1 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 535.60107421875 3 459.212401 1374.61537 42641.4072121334 1.4696 0.00067487 166340 76.388 166350 76.388 535.600002909162 21.554 0.28584 21.554 21.428 21.714 0 27 9 4 0.994857098961518 0.0126945776969752 0.145142021116943 6.215E-07 1 4865 153.36 117.81 1 7531000 2529.4 573.03 1926.3 1008.2 1419.6 2131.4 2166.8 1392.8 397.06 1262.6 2391.2 543.8 1969.6 1026.7 1479.4 2079.4 2121.2 1463.7 466.84 1221.1 1 1 1 1 1 1 1 1 1 1 3702 1273 3267 3465 4111 4111 2262 RHTPLSK 7 Phospho (STY) _RHT(ph)PLSK_ RHT(1)PLSK RHT(33.58)PLS(-33.58)K 0 0 1 1 P61956;P55854 P61956 P61956 SUMO2;SUMO3 Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 459.599456787109 3 306.823415 917.448416 44460.3557841439 1.0486 0.00032173 497930 152.78 497930 152.78 459.599005032793 28.076 0.36833 28.076 27.925 28.293 3.5527E-15 23 12 2 0.724990808267296 0.0056925705514617 0.0912545685562721 0.043906 1 6253 68.847 47.945 2 27160000 22530 29608 23876 26055 28189 23206 31662 31260 30065 3333.6 21324 27949 24023 26923 28399 23495 32018 31144 29733 3862.4 1 1 1 1 1 1 1 1 1 1 3703 724 3268 3466 4112 4112 4485 RHTVEDAVVSQGPEAAGPLSTPQEVSASR 29 Phospho (STY) _RHT(ph)VEDAVVSQGPEAAGPLSTPQEVSASR_ RHT(1)VEDAVVSQGPEAAGPLSTPQEVSASR RHT(54.9)VEDAVVS(-54.9)QGPEAAGPLS(-154.93)T(-157.38)PQEVS(-166.8)AS(-167.64)R 0 0 1 1 Q96NW4 Q96NW4 Q96NW4 ANKRD27 Ankyrin repeat domain-containing protein 27 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.908020019531 4 764.617469 3054.44077 34749.6133763052 1.7209 0.0013159 74928 57.291 74930 57.293 822.410866126751 59.092 0.66424 59.092 58.846 59.51 0 58 22 4 0.962084835837107 0.00123648271059362 0.0291153893378392 9.8943E-09 1 13840 173.64 159.16 6 19700000 5545.8 7164.2 6463 7841.8 7277.6 7258.4 8156.9 7750.3 8995.7 5815 5251.2 6771.7 6466.8 8001 7350.5 7318.6 8283.8 7930.3 8840.5 5654.9 1 1 1 1 1 1 1 1 1 1 3704 1722 3269 3467 4113 4113 4732 RIDFIPVSPAPSPTR 15 Phospho (STY) _RIDFIPVSPAPS(ph)PTR_ RIDFIPVSPAPS(0.5)PT(0.5)R RIDFIPVS(-42.28)PAPS(0)PT(0)R 0 0 1 1 Q96E09 Q96E09 Q96E09 FAM122A Protein FAM122A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.685974121094 3 578.297583 1731.87092 39120.8996933455 1.7809 0.0010299 132090 76.387 132090 76.388 654.684780161883 78.402 0.57164 78.402 78.092 78.664 0 67 19 5 0.92934246327499 0.00598690622908553 0.114178678119813 9.3043E-07 1 18387 138.82 125.79 3 29126000 6414 6977.6 5816 6344.8 5872.5 6589.8 5764.4 5360 5640.2 4734.4 6067 6587.9 5891.3 6557.2 5954.4 6587.9 5869.4 5566.7 5570.4 4582.1 1 1 1 1 1 1 1 1 1 1 3705 1668 3270 3468 4114 4114 3070;3071;4725 RIDFIPVSPAPSPTR 15 2 Phospho (STY) _RIDFIPVS(ph)PAPS(ph)PTR_ RIDFIPVS(1)PAPS(0.971)PT(0.029)R RIDFIPVS(56.74)PAPS(15.18)PT(-15.18)R 0 0 2 1 Q96E09 Q96E09 Q96E09 FAM122A Protein FAM122A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.676879882813 3 604.953027 1811.83725 38115.2105424251 1.448 0.00087599 126270 76.387 126270 76.388 681.674812399181 83.614 1.9238 83.614 82.972 84.896 -1.4211E-14 174 66 4 0.854479724875361 0.000954557552393004 0.00819712205804295 0.004721 2 19693 87.326 68.749 3 12752000 8765.4 9620.4 8920 11311 11575 7500.8 12272 9733.4 9797.5 15025 8294.9 9097.7 9006.9 11450 11597 7744.7 12390 10130 9772.1 14373 2 2 2 2 2 2 2 2 2 2 3706 1668 3270 3469 4115;4116 4116 3070;3071;4725 RIDFTPVSPAPSPTR 15 Phospho (STY) _RIDFTPVS(ph)PAPSPTR_ RIDFTPVS(1)PAPSPTR RIDFT(-35.89)PVS(35.89)PAPS(-46.74)PT(-68.58)R 0 0 1 1 Q7Z309 Q7Z309 Q7Z309 FAM122B Protein FAM122B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.673522949219 3 574.285455 1719.83453 38484.8396435899 1.8485 0.0010615 133010 76.388 133020 76.389 651.007733694029 63.381 0.44123 63.381 63.165 63.606 7.1054E-15 36 14 3 0.980120323781993 0.00273965951874295 0.0176510753306472 5.491E-07 1 14900 154.07 130.97 4 14560000 5761.7 6303.2 5548.4 6314.8 6373.1 5820 7211.1 6260.4 6020.8 3995.8 5451.2 5954.5 5610.9 6475.1 6429.5 5868.8 7267.4 6382.9 5991.2 3907.4 1 1 1 1 1 1 1 1 1 1 3707 1329 3271 3470 4117 4117 2386;2387;4637 RIDFTPVSPAPSPTR 15 2 Phospho (STY) _RIDFTPVS(ph)PAPS(ph)PTR_ RIDFT(0.005)PVS(0.995)PAPS(0.5)PT(0.5)R RIDFT(-22.87)PVS(22.87)PAPS(0)PT(0)R 0 0 2 1 Q7Z309 Q7Z309 Q7Z309 FAM122B Protein FAM122B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.330749511719 3 600.940898 1799.80087 37893.3612098851 1.8844 0.0011324 127110 76.388 127120 76.389 677.328219259438 67.98 1.4672 67.98 67.416 68.884 0 157 49 5 0.914992347277823 0.00137605708621848 0.0456759941298861 0.0039405 2 15883 89.721 70.114 6 22496000 11361 12481 13020 13121 13874 11984 12588 12707 13208 12981 10757 11794 13023 13415 14011 12096 12892 13109 13006 12517 2 2 2 2 2 2 2 2 2 2 3708 1329 3271 3471 4118;4119 4118 2386;2387;4637 RIDISPSTFR 10 Phospho (STY) _RIDIS(ph)PSTFR_ RIDIS(0.999)PS(0.001)TFR RIDIS(30.04)PS(-30.04)T(-49.93)FR 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 500.931091308594 3 424.542977 1270.6071 44087.9779370826 0.927 0.00039355 179930 76.388 179930 76.388 500.930871171032 69.362 1.6296 69.362 68.732 70.361 0 213 55 6 0.993843529863475 0.00439934656432371 0.0953615650373864 2.4228E-06 2 16366 143.58 103.66 3 297770000 7899.6 11204 9518.5 10167 11298 8486.8 12093 10771 10891 2900.5 7481.1 10578 9514.8 10475 11371 8615.9 12239 10803 10797 2980.4 2 2 2 2 2 2 2 2 2 2 3709 2257 3272 3472 4120;4121 4121 4175 RIDISPSTFRK 11 Phospho (STY) _RIDIS(ph)PSTFRK_ RIDIS(0.636)PS(0.359)T(0.004)FRK RIDIS(2.48)PS(-2.48)T(-21.57)FRK 0 0 1 2 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.26416015625 4 350.682793 1398.70206 45959.9247699186 0.44406 0.00015572 326740 114.58 326740 114.58 465.264254173847 67.463 0.90901 67.463 66.978 67.887 0 86 30 4 0.962718763432731 0.00233546544584583 0.0788533349850846 0.00014545 1 15804 108.06 72.398 3 15527000 4169.8 4557.3 4353.4 4280.5 8018.1 4432.7 7851.3 5809.7 4880.2 1447.2 3946.4 4303.5 4417.6 4414.4 7915.2 4456.3 7918.6 5817.8 4941.3 1497.2 1 1 1 1 1 1 1 1 1 1 3710 2257 3273 3473 4122 4122 4175 RIDISPSTLR 10 Phospho (STY) _RIDIS(ph)PSTLR_ RIDIS(0.991)PS(0.009)TLR RIDIS(20.45)PS(-20.45)T(-39.33)LR 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 489.602905273438 3 413.21486 1236.62275 44355.3026773395 1.0768 0.00044496 184860 76.387 184860 76.388 489.602423526825 64.057 1.6203 64.057 63.462 65.082 0 173 55 5 0.974038413658509 0.00258105655665359 0.0309170099567439 0.00024041 2 14961 109.95 62.242 3 287520000 14353 18302 16092 18719 15520 16390 14327 16082 17551 3484.8 13588 17292 16095 19157 15769 16535 14729 16249 17181 3653.6 2 2 2 2 2 2 2 2 2 2 3711 2072 3274 3474 4123;4124 4123 3748 RIDISPSTLRK 11 Phospho (STY) _RIDIS(ph)PSTLRK_ RIDIS(0.983)PS(0.013)T(0.004)LRK RIDIS(18.69)PS(-18.69)T(-24.01)LRK 0 0 1 2 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.689636230469 3 455.913181 1364.71771 40148.3113563353 2.2358 0.0010193 335100 152.78 335100 152.78 608.68827727443 63.264 0.84542 63.264 62.817 63.662 0 110 28 5 0.959506074555939 0.00289773899837904 0.035816214601545 0.049061 1 14801 50.305 31.709 3 60027000 9258.1 8540.4 9942.2 9589 8840.4 8988.4 8347.7 8943.8 9496.5 3275.3 8763.1 8073.8 9957.5 9772 9030.4 9042 8552.4 9071.7 9321.5 3291 1 1 1 1 1 1 1 1 1 1 3712 2072 3275 3475 4125 4125 3748 RINPPSSGGTSSSPIK 16 Phospho (STY) _RINPPSSGGTSSS(ph)PIK_ RINPPSSGGTS(0.023)S(0.419)S(0.558)PIK RINPPS(-96.62)S(-81.77)GGT(-33.97)S(-13.91)S(-1.25)S(1.25)PIK 0 0 1 1 P14859 P14859 P14859 POU2F1 POU domain, class 2, transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 708.381774902344 3 555.604964 1663.79306 37548.2239145065 2.3799 0.0013223 274970 152.78 274980 152.78 708.380542110295 46.045 0.82109 46.045 45.585 46.406 0 100 27 5 0.9393083934562 0.00211766602064738 0.0541664522339951 1.9929E-08 1 10621 174.97 138.2 6 20091000 19878 18239 18417 18537 20350 22612 20166 22068 19135 10900 18805 17231 18652 19081 20533 22496 20508 22485 18925 10774 1 1 1 1 1 1 1 1 1 1 3713 390 3276 3476 4126 4126 622 RINSERK 7 Phospho (STY) _RINS(ph)ERK_ RINS(1)ERK RINS(79.15)ERK 0 0 1 2 P22681 P22681 P22681 CBL E3 ubiquitin-protein ligase CBL MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.941497802734 3 328.165841 981.475693 45692.7832352022 0.94138 0.00030893 465540 152.78 465540 152.78 480.941282785187 26.255 0.4688 26.255 26.045 26.514 0 39 15 4 0.703282546674058 0.00547186034100768 0.113172751510358 0.014729 1 5838 79.148 16.073 1 14379000 19877 17732 19544 19724 17434 19260 11059 15786 20576 3999.9 18807 16762 19661 20123 17735 19290 11824 16090 19898 4131.7 1 1 1 1 1 1 1 1 1 1 3714 461 3277 3477 4127 4127 756 RIPHSPAR 8 Phospho (STY) _RIPHS(ph)PAR_ RIPHS(1)PAR RIPHS(71.15)PAR 0 0 1 1 Q13136 Q13136 Q13136 PPFIA1 Liprin-alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 414.893859863281 3 338.506197 1012.49676 45460.4661435799 -0.1259 -4.2618E-05 225660 76.387 225660 76.387 414.893927700019 25.4 0.40668 25.4 25.21 25.616 0 28 12 3 0.884638609848165 0.0044698867264083 0.0901100170117898 0.012602 1 5666 71.153 56.935 1 9145500 10500 11026 11099 11360 10195 10322 9291.8 10850 12772 3681.8 9937.6 10418 11129 11627 10390 10406 9596.9 10974 12454 3718 1 1 1 1 1 1 1 1 1 1 3715 928 3278 3478 4128 4128 1528 RIPSIVSSPLNSPLDR 16 Phospho (STY) _RIPSIVSS(ph)PLNSPLDR_ RIPSIVS(0.076)S(0.924)PLNSPLDR RIPS(-48.82)IVS(-10.83)S(10.83)PLNS(-52.76)PLDR 0 0 1 1 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.376708984375 3 610.987297 1829.94006 36871.3885801284 1.9921 0.0012171 125020 76.387 125020 76.389 687.709464282733 81.736 0.72093 81.736 81.307 82.028 0 87 24 4 0.989988741580423 0.00235090787051843 0.0233072737490102 8.4596E-05 1 19078 118.08 91.643 4 38620000 5418.5 6653.1 6091.7 7601.2 7189.1 7028 6957.6 8197.9 7924.8 9313.2 5129.8 6290.3 6108.3 7737.5 7228.3 7102.3 7119.9 8458.4 7778.3 8959.2 1 1 1 1 1 1 1 1 1 1 3716 654 3279 3479 4129 4129 1088 RISDPQVFSK 10 Phospho (STY) _RIS(ph)DPQVFSK_ RIS(1)DPQVFSK RIS(74.49)DPQVFS(-74.49)K 0 0 1 1 Q4L180 Q4L180 Q4L180 FILIP1L Filamin A-interacting protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.315124511719 3 419.539344 1255.5962 42823.9744901686 2.5977 0.0010898 364150 152.78 364150 152.78 572.648662143469 63.044 0.46897 63.044 62.845 63.314 7.1054E-15 39 15 4 0.822766287483607 0.00148642048632542 0.0274455546622503 0.0031752 1 14811 93.237 50.494 2 7493600 7501 7296.4 8412.8 7311.4 11895 7389 11609 9959 7494 4025.7 7101.3 6892.7 8460.9 7507.4 11858 7442.7 11718 10011 7568.9 4021.2 1 1 1 1 1 1 1 1 1 1 3717 1141 3280 3480 4130 4130 1985 RISIVENCFGAAGQPLTIPGR 21 Phospho (STY) _RIS(ph)IVENCFGAAGQPLTIPGR_ RIS(1)IVENCFGAAGQPLTIPGR RIS(127.76)IVENCFGAAGQPLT(-127.76)IPGR 0 0 1 1 Q9H8W4 Q9H8W4 Q9H8W4 PLEKHF2 Pleckstrin homology domain-containing family F member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.780212402344 3 779.390877 2335.1508 33386.1265661216 1.3669 0.0010654 98009 76.388 98011 76.389 856.113402699892 88.35 0.54133 88.35 88.082 88.623 0 56 18 4 0.798152161111536 0.00251500742315614 0.0639763123091773 2.7609E-11 1 20634 182.82 168.13 2 17128000 4318.7 4383.5 4627.1 3733.2 5780.8 4979.6 6457.1 6474.5 4261 19053 4087.8 4137.2 4656.9 3892.8 5805.8 4990.3 6480.1 7010.5 4297.4 18090 1 1 1 1 1 1 1 1 1 1 3718 1962 3281 3481 4131 4131 3572 RISLSDMPR 9 Phospho (STY) _RIS(ph)LSDMPR_ RIS(0.997)LS(0.003)DMPR RIS(24.88)LS(-24.88)DMPR 0 0 1 1 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.355651855469 2 577.773023 1153.53149 36877.4520674693 1.9473 0.0011251 198320 114.58 198320 114.58 692.354182274889 63.584 0.80636 63.584 63.314 64.12 0 72 27 4 0.964974919297737 0.00354992129881944 0.0471855719092903 0.00063437 1 14902 107.97 81.849 2 36711000 12326 15592 15091 13982 22307 15567 23094 15994 13508 6719.7 11674 14720 15127 14480 22213 15551 23207 16229 13735 6697.6 1 1 1 1 1 1 1 1 1 1 3719 2190 3282 3482 4132 4132 3965 RISQSQPVR 9 Phospho (STY) _RIS(ph)QSQPVR_ RIS(0.999)QS(0.001)QPVR RIS(28.48)QS(-28.48)QPVR 0 0 1 1 O95071 O95071 O95071 UBR5 E3 ubiquitin-protein ligase UBR5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.373107910156 2 575.790062 1149.56557 36483.4691772774 2.1488 0.0012373 199000 114.58 199000 114.58 690.371702367875 30.313 0.56604 30.313 29.985 30.551 -3.5527E-15 54 18 5 0.832091032866299 0.00840321208115388 0.333231987382068 7.1606E-07 1 6752 173.37 126.08 2 94235000 35462 40080 35026 36804 56124 33292 49346 43521 42570 6023.1 33554 37844 35540 37932 55607 33666 50370 43440 42291 6678.7 1 1 1 1 1 1 1 1 1 1 3720 231 3283 3483 4133 4133 400 RISQVSSGETEYNPTEAR 18 Phospho (STY) _RIS(ph)QVSSGETEYNPTEAR_ RIS(1)QVSSGETEYNPTEAR RIS(57.63)QVS(-57.63)S(-79.31)GET(-119.42)EY(-190.96)NPT(-200.35)EAR 0 0 1 1 Q6ZNJ1 Q6ZNJ1 Q6ZNJ1 NBEAL2 Neurobeachin-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.369873046875 3 701.98294 2102.92699 35347.9000769264 1.1198 0.00078607 108810 76.386 108820 76.387 778.702567764393 51.553 0.49364 51.553 51.312 51.806 7.1054E-15 61 16 5 0.957315711155774 0.00484604046496483 0.0192401888622621 6.9012E-23 1 11972 271.81 250.01 6 76171000 18842 23468 16906 20800 22218 17277 23854 18903 19713 10435 17822 22155 17203 21463 22252 17515 24089 19213 19626 10263 1 1 1 1 1 1 1 1 1 1 3721 1293 3284 3484 4134 4134 2307;2308 RISQVSSGETEYNPTEAR 18 2 Phospho (STY) _RIS(ph)QVS(ph)SGETEYNPTEAR_ RIS(1)QVS(0.48)S(0.376)GET(0.144)EYNPTEAR RIS(53.19)QVS(1.07)S(-1.07)GET(-5.22)EY(-45.71)NPT(-72.93)EAR 0 0 2 1 Q6ZNJ1 Q6ZNJ1 Q6ZNJ1 NBEAL2 Neurobeachin-like protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.031066894531 3 728.638384 2182.89332 NaN NaN NaN NaN NaN NaN NaN NaN 52.494 1 52.494 51.994 52.994 0 NaN NaN NaN 1.0521E-08 1 12219 147.45 127.01 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3722 1293 3284 3485 4135 4135 2307;2308 RISSSSVQPCSEEVSTPQDSLAQCK 25 Phospho (STY) _RIS(ph)SSSVQPCSEEVSTPQDSLAQCK_ RIS(0.667)S(0.327)S(0.006)SVQPCSEEVSTPQDSLAQCK RIS(3.1)S(-3.1)S(-20.7)S(-32.36)VQPCS(-79.16)EEVS(-115.32)T(-130.14)PQDS(-214.6)LAQCK 0 0 1 1 P42694 P42694 P42694 HELZ Probable helicase with zinc finger domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1107.19921875 3 954.08781 2859.2416 30059.7712348043 1.2369 0.0011801 160130 152.77 160130 152.78 1107.19634245634 59.762 0.51187 59.762 59.539 60.05 -7.1054E-15 71 17 5 0.984900130477592 0.00285001672592726 0.0136443245528973 4.9275E-26 1 13992 287.3 267.13 8 41631000 8313.5 6325 8512.4 6412.4 8539.8 7921.6 9498 9214.4 6647.5 6576.2 7867.4 5975.5 8562.2 6603 8675.5 7901.5 9544.1 9390.7 6679.9 6405.6 1 1 1 1 1 1 1 1 1 1 3723 591 3285 3486 4136 4136 962 RISTSDILSEK 11 Phospho (STY) _RIS(ph)TSDILSEK_ RIS(0.942)T(0.055)S(0.003)DILSEK RIS(12.33)T(-12.33)S(-24.87)DILS(-103.47)EK 0 0 1 1 O60293 O60293 O60293 ZFC3H1 Zinc finger C3H1 domain-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 596.328186035156 3 443.55343 1327.63846 39993.1024844434 1.7127 0.00075966 344430 152.77 344440 152.78 596.327623413742 69.529 1.0111 69.529 69.09 70.102 0 100 34 4 0.994345414500902 0.00408783530750148 0.0715905648850641 5.0104E-07 1 16283 156.88 108.87 4 23257000 8505.9 12104 9374.2 11446 9875.4 9165.7 11980 13016 12071 3012.1 8052 11431 9399.4 11756 10022 9343 12096 12998 11907 3137.5 1 1 1 1 1 1 1 1 1 1 3724 140 3286 3487 4137 4137 237 RKASELR 7 Phospho (STY) _RKAS(ph)ELR_ RKAS(1)ELR RKAS(47.89)ELR 0 0 1 2 P35269 P35269 P35269 GTF2F1 General transcription factor IIF subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 466.606140136719 3 313.83057 938.469879 45627.5182403 0.53964 0.00016936 486810 152.78 486810 152.78 466.605966106225 28.877 0.46863 28.877 28.637 29.106 0 33 15 3 0.933249023655345 0.00250245310056319 0.0285153331360751 0.054565 1 6418 47.894 11.309 1 16670000 22145 9592.1 21878 8397.5 9704.2 22911 11272 14579 8232.8 3201.9 20954 9054.5 21899 8928.4 10586 22219 11315 15043 8252.2 3352.3 1 1 1 1 1 1 1 1 1 1 3725 546 3287 3488 4138 4138 885 RKASGPPVSELITK 14 Phospho (STY) _RKAS(ph)GPPVSELITK_ RKAS(1)GPPVSELITK RKAS(59.02)GPPVS(-59.02)ELIT(-97.32)K 0 0 1 2 P10412;P16402 P10412;P16402 P10412 HIST1H1E;HIST1H1D Histone H1.4;Histone H1.3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.778869628906 3 521.614912 1561.82291 36861.3894195688 2.0422 0.0010652 439330 229.16 439340 229.16 751.111829369973 66.117 0.73748 66.117 65.778 66.516 0 66 24 4 0.967152828392714 0.00183040031520936 0.0193553480467246 0.00018045 1 15508 116.43 89.291 3 16473000 10756 18686 9314.2 16422 11579 11479 11829 12611 20019 13052 10173 17639 9490 16921 11628 11765 12253 12999 19405 12582 1 1 1 1 1 1 1 1 1 1 3726 353;408 3288 3489 4139 4139 577 RKASPEPEGEAAGK 14 Phospho (STY) _RKAS(ph)PEPEGEAAGK_ RKAS(1)PEPEGEAAGK RKAS(104.95)PEPEGEAAGK 0 0 1 2 Q8IU81 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.066467285156 3 502.903122 1505.68754 36863.5608020471 2.1186 0.0010654 455680 229.16 455680 229.16 732.065862631527 32.401 0.61586 32.401 32.178 32.794 0 50 20 4 0.780800842243636 0.00244785589923534 0.0328926775652737 0.00027276 1 7236 104.95 90.478 1 24131000 17931 18633 17885 17803 21760 16068 22212 18987 19522 3310.1 16967 17597 18060 18303 21857 16226 22514 19032 19376 3556.3 1 1 1 1 1 1 1 1 1 1 3727 1407 3289 3490 4140 4140 2562 RKDSAQDDQAK 11 Phospho (STY) _RKDS(ph)AQDDQAK_ RKDS(1)AQDDQAK RKDS(165.45)AQDDQAK 0 0 1 2 Q13045 Q13045 Q13045 FLII Protein flightless-1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.028137207031 3 447.864667 1340.57217 38689.5387518322 1.5187 0.00068015 511680 229.16 511680 229.16 677.027397285235 26.759 0.81263 26.759 26.568 27.38 3.5527E-15 82 27 4 0.981449816168073 0.00322173897430147 0.0140783252007731 3.8414E-07 1 5942 165.45 133.11 1 50840000 19058 8168 18147 8172.1 17205 16371 17719 15725 7843.7 8866.2 18030 7716 18315 8522.4 17513 16052 17742 16065 8158.2 8712.5 1 1 1 1 1 1 1 1 1 1 3728 920 3290 3491 4141 4141 1517 RKGSQITQQSTNQSR 15 Phospho (STY) _RKGS(ph)QITQQSTNQSR_ RKGS(1)QITQQSTNQSR RKGS(54.52)QIT(-54.52)QQS(-70.08)T(-84.66)NQS(-94.34)R 0 0 1 2 P50750 P50750 P50750 CDK9 Cyclin-dependent kinase 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.399169921875 3 600.290039 1797.84829 36265.9439223854 1.2965 0.00077827 254500 152.77 254500 152.78 753.065040769838 26.789 0.32391 26.789 26.65 26.974 0 31 10 4 0.98758345743396 0.00564020923198933 0.0315354734375576 1.2612E-06 1 5966 139.7 119.8 5 27500000 10142 10152 10722 9557.9 9266.4 11191 9471.5 10611 11662 1731.1 9598.9 9586.4 10746 9876.2 9494.5 11140 9691.3 10718 11414 1875.6 1 1 1 1 1 1 1 1 1 1 3729 669 3291 3492 4142 4142 1126 RKHSPSPPPPTPTESR 16 2 Phospho (STY) _RKHS(ph)PS(ph)PPPPTPTESR_ RKHS(1)PS(1)PPPPTPTESR RKHS(50.17)PS(42.43)PPPPT(-42.43)PT(-62.25)ES(-63.3)R 0 0 2 2 Q92922 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.052551269531 4 483.469762 1929.84994 40391.1922740176 1.7377 0.00084014 237000 114.58 237000 114.58 598.302828943778 27.757 1.4302 27.757 27.293 28.723 -3.5527E-15 154 49 4 0.959392592008076 0.0016004247868795 0.0173196236679626 0.00036007 2 6156 100.94 76.901 10 16168000 11064 11996 12295 11652 13333 12213 12007 13052 12086 3259.3 10474 11330 12320 11994 13451 12234 12288 13158 11922 3371.1 2 2 2 2 2 2 2 2 2 2 3730 1631 3292 3493 4143;4144 4143 3013;3014 RKLSGDQPAAR 11 Phospho (STY) _RKLS(ph)GDQPAAR_ RKLS(1)GDQPAAR RKLS(101.01)GDQPAAR 0 0 1 2 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.657165527344 3 426.881993 1277.62415 41478.1338300893 1.6305 0.00069603 357890 152.78 357890 152.78 579.657460116017 29.129 0.38457 29.129 28.926 29.31 0 38 12 4 0.990007806670029 0.00449955011867025 0.0675024722435464 0.00045633 1 6476 101.01 88.087 1 31485000 10522 15088 10903 16790 11973 11830 10217 12617 17289 1845.9 9958.3 14263 10966 17055 12069 12093 10678 12681 16759 2030.1 1 1 1 1 1 1 1 1 1 1 3731 953 3293 3494 4145 4145 1597 RKMYEEFLSK 10 Unmodified _RKMYEEFLSK_ 0 0 0 2 P10644;P31321 P10644 P10644 PRKAR1A;PRKAR1B cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed;cAMP-dependent protein kinase type I-beta regulatory subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.549835205078 4 333.426053 1329.67511 44031.9352248105 1.0513 0.00035053 515480 171.87 515480 171.87 505.298885381784 32.224 1.8706 32.224 31.413 33.284 0 197 63 4 0.808327208949257 0.00564817852255133 0.13899260247847 0.05471 1 7138 14.972 0.55319 1 37926000 33488 30519 35796 33643 35760 34233 37933 33766 36512 3581.2 31697 28848 35916 34363 36321 34288 38469 33995 36087 4153.5 1 1 1 1 1 1 1 1 1 1 3732 355 3294 3495 4146 4146 RKPEEESPR 9 Phospho (STY) _RKPEEES(ph)PR_ RKPEEES(1)PR RKPEEES(120.14)PR 0 0 1 2 P49321 P49321 P49321 NASP Nuclear autoantigenic sperm protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 555.962646484375 3 403.187082 1206.53942 42712.5415521748 1.4193 0.00057226 378920 152.78 378920 152.78 555.962216532638 25.17 0.67001 25.17 24.977 25.647 0 65 22 4 0.977234086219256 0.00684172700935188 0.0715183988045854 0.00033207 1 5607 120.14 74.22 1 29776000 7201.8 11913 6218.9 9919.9 6766 6477.6 7149.5 6888.5 11992 1511.4 6811.1 11242 6326 10252 6843.8 6654.4 7391.8 6939.3 11627 1582.6 1 1 1 1 1 1 1 1 1 1 3733 635 3295 3496 4147 4147 1050 RKPSNVSEK 9 Phospho (STY) _RKPS(ph)NVSEK_ RKPS(1)NVSEK RKPS(48.62)NVS(-48.62)EK 0 0 1 2 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 454.015625 4 281.891948 1123.53869 46726.5431603725 0.54146 0.00015263 609710 171.87 609710 171.87 453.764235863842 33.518 0.85185 33.518 33.082 33.934 0 92 29 5 0.971156750872874 0.00278640037484572 0.00587572799089072 3.9536E-06 1 7474 159.52 122.01 2 66760000 10697 23736 11321 20231 43358 9276.1 48398 24944 25231 2260.1 10124 22403 11765 20811 42158 9987.6 48388 24482 25878 2705.5 1 1 1 1 1 1 1 1 1 1 3734 2028 3296 3497 4148 4148 3686 RKPSPEPEGEVGPPK 15 Phospho (STY) _RKPS(ph)PEPEGEVGPPK_ RKPS(1)PEPEGEVGPPK RKPS(128.32)PEPEGEVGPPK 0 0 1 2 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 593.580932617188 4 421.708002 1682.8029 40509.7147560368 1.5995 0.00067454 407560 171.87 407570 171.87 593.831362566672 44.472 0.83622 44.472 44.022 44.859 0 111 28 5 0.871388210855665 0.00192276377485587 0.0219237484780429 4.7205E-05 1 10164 128.32 92.3 1 76210000 26232 8847.5 23655 8911.6 12743 22764 12455 15311 10107 2741.6 24812 8358.3 23833 9368.8 13569 22111 12628 15729 10072 2935.9 1 1 1 1 1 1 1 1 1 1 3735 1350 3297 3498 4149 4149 2441 RKSASDSGCDPASK 14 Phospho (STY) _RKS(ph)ASDSGCDPASK_ RKS(0.985)AS(0.014)DS(0.001)GCDPASK RKS(18.46)AS(-18.46)DS(-29.09)GCDPAS(-53.08)K 0 0 1 2 Q7LBC6 Q7LBC6 Q7LBC6 KDM3B Lysine-specific demethylase 3B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.047058105469 3 515.883622 1544.62904 36462.9867336073 2.7983 0.0014436 444220 229.16 444220 229.16 745.046839518724 30.031 0.41835 30.031 29.895 30.313 0 23 13 2 0.766995216632588 0.000865144542503035 0.0228718460514842 0.013213 1 6727 78.794 54.753 4 12341000 26003 21746 27586 23013 19782 26456 19512 25688 24798 4239.7 24611 20550 27590 23607 20537 26363 20020 25925 24244 4586.7 1 1 1 1 1 1 1 1 1 1 3736 1322 3298 3499 4150 4150 2368 RKSELEFETLK 11 Phospho (STY) _RKS(ph)ELEFETLK_ RKS(1)ELEFETLK RKS(75.23)ELEFET(-75.23)LK 0 0 1 2 Q5JSH3 Q5JSH3 Q5JSH3 WDR44 WD repeat-containing protein 44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.408203125 3 487.244597 1458.71196 38462.4289264781 2.4169 0.0011776 470320 229.16 470330 229.16 716.74078265477 69.115 0.51868 69.115 68.884 69.402 0 47 17 4 0.576923421481185 0.000906355536764982 0.011869392783923 0.0058313 1 16211 90.385 62.742 2 6768500 13870 14472 13607 14140 13432 11871 12766 14438 17311 9288.8 13124 13669 13714 14503 13636 12050 13151 14663 16888 9080.6 1 1 1 1 1 1 1 1 1 1 3737 1167 3299 3500 4151 4151 2018 RKSFTSLYK 9 Phospho (STY) _RKS(ph)FTSLYK_ RKS(0.998)FT(0.001)SLYK RKS(29.18)FT(-29.18)S(-34.56)LY(-51.45)K 0 0 1 2 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.037231445313 3 403.872434 1208.59547 40188.5367908805 1.9192 0.0007751 567420 229.16 567420 229.16 633.370436406887 61.69 0.55811 61.69 61.42 61.978 0 46 18 3 0.90370651767135 0.00176826936445865 0.024088910526376 0.020233 1 14454 63.181 37.732 4 25757000 21917 24770 21370 23678 29352 21027 35563 27599 27005 4792 20737 23393 21660 24336 29395 21287 35667 27574 27009 5151 1 1 1 1 1 1 1 1 1 1 3738 1180 3300 3501 4152 4152 2046 RKSGGNEVSIEER 13 Phospho (STY) _RKS(ph)GGNEVSIEER_ RKS(1)GGNEVSIEER RKS(34)GGNEVS(-34)IEER 0 0 1 2 Q15061 Q15061 Q15061 WDR43 WD repeat-containing protein 43 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.352416992188 3 514.242026 1539.70425 38454.4316145988 1.2583 0.00064705 297090 152.78 297090 152.78 667.017469317449 34.63 0.45644 34.63 34.459 34.915 0 38 15 3 0.970619193680939 0.00293885341411201 0.013942490820392 0.0074692 1 7770 88.283 62.159 2 32435000 16086 19112 18777 22473 15213 21246 13674 19659 25819 4581.2 15232 18074 18706 22850 15638 21340 14325 19919 24960 4768.8 1 1 1 1 1 1 1 1 1 1 3739 1056 3301 3502 4153 4153 1824 RKSHEAEVLK 10 Phospho (STY) _RKS(ph)HEAEVLK_ RKS(1)HEAEVLK RKS(139.7)HEAEVLK 0 0 1 2 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 492.038848876953 4 319.915689 1275.63365 44574.8349058932 0.82109 0.00026268 537240 171.87 537240 171.87 491.787886598037 39.462 2.5787 39.462 38.933 41.512 0 250 88 5 0.886367922833238 0.00485116679203264 0.0651864821228937 2.3557E-06 3 8900 139.7 90.073 1 99294000 26148 42591 25487 43362 48374 27017 51917 42018 47295 4383.4 24740 40239 25989 44213 47785 28007 52551 41698 46862 5100 3 3 3 3 3 3 3 3 3 3 3740 411 3302 3503 4154;4155;4156 4154 664 RKSLPAR 7 Phospho (STY) _RKS(ph)LPAR_ RKS(1)LPAR RKS(56.36)LPAR 0 0 1 2 Q8NCE2 Q8NCE2 Q8NCE2 MTMR14 Myotubularin-related protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 455.942474365234 3 303.167293 906.48005 46560.6756974711 0.80769 0.00024486 503930 152.77 503930 152.77 455.940376351137 30.744 1.9536 30.744 29.076 31.03 -3.5527E-15 117 65 5 0.777094634721785 0.0180950138363224 0.616977595447839 0.0381 1 6862 56.359 30.316 1 95918000 86077 53961 82773 49322 142010 90677 150910 105400 61246 3864.4 81438 50948 84280 51590 140660 89236 150730 105270 64234 6078.1 1 1 1 1 1 1 1 1 1 1 3741 1496 3303 3504 4157 4157 2748 RKSLSDSESDDSK 13 Phospho (STY) _RKS(ph)LSDSESDDSK_ RKS(0.998)LS(0.002)DSESDDSK RKS(27.49)LS(-27.49)DS(-52.58)ES(-71.49)DDS(-82.88)K 0 0 1 2 Q13185 Q13185 Q13185 CBX3 Chromobox protein homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.383972167969 3 511.885797 1532.63556 36344.7402015336 1.482 0.0007586 447680 229.16 447690 229.16 741.049127257567 34.743 0.8395 34.743 34.52 35.36 0 83 28 5 0.98403227113504 0.00726872680826158 0.024187622289944 6.7613E-07 1 7773 151.95 113.98 5 132240000 52918 56458 57946 56583 44056 62510 50698 55024 61243 5550 50093 53334 57902 58185 45632 62309 51576 55650 59981 6499.4 1 1 1 1 1 1 1 1 1 1 3742 934 3304 3505 4158 4158 1537;1538 RKSPENTEGK 10 Phospho (STY) _RKS(ph)PENTEGK_ RKS(1)PENTEGK RKS(61.21)PENT(-61.21)EGK 0 0 1 2 Q15651 Q15651 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 479.017333984375 4 307.144772 1224.54998 45130.9221661533 1.3224 0.00040616 559580 171.87 559580 171.87 479.016878212106 27.792 0.62755 27.792 27.581 28.209 0 66 21 5 0.565971336400425 0.0027138294564351 0.0478599930672661 8.8482E-05 1 6224 126.71 102.55 2 104490000 9922.2 8366.8 12108 9268.5 16479 12730 15149 11343 9420.3 3439.4 9397.1 7909 12118 9517.2 16440 12594 15327 11535 9537.9 3501.1 1 1 1 1 1 1 1 1 1 1 3743 1085 3305 3506 4159 4159 1882 RKSSNMK 7 Phospho (STY) _RKS(ph)SNMK_ RKS(0.5)S(0.5)NMK RKS(0)S(0)NMK 0 0 1 2 Q9UH99 Q9UH99 Q9UH99 SUN2 SUN domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 539.976623535156 3 310.81241 929.415401 42032.5102461081 1.5034 0.00046728 737300 229.16 737310 229.16 539.975976624395 29.108 0.41368 29.108 28.866 29.28 3.5527E-15 42 13 4 0.871071130607016 0.00270669587836955 0.0397466080834656 0.02876 1 6491 61.161 28.841 2 15323000 21447 11313 21990 12657 13832 25020 14151 16133 12219 2858.9 20297 10694 22013 13112 14521 24420 14337 16613 12138 3065.3 1 1 1 1 1 1 1 1 1 1 3744 2143 3306 3507 4160 4160 3855;3856 RKTSQSEEEEAPR 13 Phospho (STY) _RKTS(ph)QSEEEEAPR_ RKT(0.247)S(0.746)QS(0.007)EEEEAPR RKT(-4.81)S(4.81)QS(-20.3)EEEEAPR 0 0 1 2 Q7RTP6 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.684326171875 3 542.908824 1625.70464 37491.6199529417 1.6282 0.00088397 281400 152.78 281400 152.78 695.683728367349 25.523 0.43017 25.523 25.356 25.787 0 35 14 4 0.990857386255723 0.00371773184124353 0.0404550495285975 8.1217E-07 1 5688 147.1 125.44 3 13730000 8293.4 6982.3 8325.5 6504 7573.2 7330.9 6454 8464.9 8718.6 1311.5 7847.8 6593.2 8370.1 6720.6 7716 7327.9 6685.4 8486.5 8506.6 1430.8 1 1 1 1 1 1 1 1 1 1 3745 1324 3307 3508 4161 4161 2372 RLAAAEETAVSPR 13 Phospho (STY) _RLAAAEETAVS(ph)PR_ RLAAAEETAVS(1)PR RLAAAEET(-53.97)AVS(53.97)PR 0 0 1 1 Q9BUH6 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 560.628234863281 3 484.239846 1449.69771 41881.5492918418 1.3865 0.00067141 157750 76.387 157750 76.388 560.627375995349 42.59 0.89332 42.59 42.165 43.059 0 111 30 5 0.974210935357441 0.00649133051659862 0.213703004206526 4.9839E-07 1 9692 151.39 127.64 2 102960000 15063 10711 16168 10249 13036 15956 13954 13723 9758.8 11813 14257 10116 16180 10643 13423 15733 14045 14208 9807 11441 1 1 1 1 1 1 1 1 1 1 3746 1833 3308 3509 4162 4162 3355 RLEEFEGERER 11 Unmodified _RLEEFEGERER_ 0 0 0 2 Q08378 Q08378 Q08378 GOLGA3 Golgin subfamily A member 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 420.47412109375 4 363.182478 1448.7008 48759.6076751282 -0.62785 -0.00022802 157740 57.29 157740 57.29 420.474054715301 48.365 0.41091 48.365 48.123 48.534 0 73 13 7 0.866133819176239 0.00147268369020656 0.01729573844482 0.054429 1 11205 16.942 0 1 19745000 10212 6681.2 12068 7895.6 13899 11080 14478 11271 8248.9 273.76 9669.8 6318.4 12069 8084 13998 10967 14539 11307 8403.4 518.64 1 1 1 1 1 1 1 1 1 1 3747 888 3309 3510 4163 4163 RLGGLRPESPESLTSVSR 18 Phospho (STY) _RLGGLRPES(ph)PESLTSVSR_ RLGGLRPES(1)PESLTSVSR RLGGLRPES(39.81)PES(-39.81)LT(-57.5)S(-68.12)VS(-90.19)R 0 0 1 2 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.731628417969 3 674.344032 2020.01027 35976.9770854072 1.5811 0.0010662 113280 76.388 113280 76.389 751.066103357308 60.04 0.92234 60.04 59.566 60.489 7.1054E-15 109 31 5 0.994223659360491 0.00189921015558846 0.0115380329017009 3.978E-07 1 14009 139.77 121.68 5 61721000 9038.4 9378.6 11070 10469 9006.9 9748.6 8429.5 10269 9212 62333 8560.2 8865.8 11004 10671 9254.6 9927.5 8629.7 12158 9056.3 58932 1 1 1 1 1 1 1 1 1 1 3748 1944 3310 3511 4164 4164 3529 RLGSVEAPK 9 Phospho (STY) _RLGS(ph)VEAPK_ RLGS(1)VEAPK RLGS(44.43)VEAPK 0 0 1 1 P46087 P46087 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 498.953125 3 346.177746 1035.51141 44580.3406249582 1.0664 0.00036917 441320 152.78 441320 152.78 498.95274060457 49.192 0.39947 49.192 48.997 49.396 0 34 13 3 0.458130513476788 0.00204720481869569 0.0520201709453205 0.042163 1 11431 44.426 24.097 1 16197000 20313 13673 19041 13898 22079 21436 23749 19487 16137 1733.5 19216 12917 19287 14377 22243 21128 23886 19674 16245 2083.3 1 1 1 1 1 1 1 1 1 1 3749 606 3311 3512 4165 4165 1000 RLISPYK 7 Phospho (STY) _RLIS(ph)PYK_ RLIS(1)PYK RLIS(62.69)PY(-62.69)K 0 0 1 1 O14929 O14929 O14929 HAT1 Histone acetyltransferase type B catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 472.279144287109 3 319.503682 955.489218 45493.3813955877 0.77651 0.0002481 478160 152.78 478160 152.78 472.278859277161 60.127 0.781 60.127 59.736 60.517 0 89 26 4 0.98487791392235 0.00445395270932703 0.0622968596488584 0.00077538 1 14054 121.6 27.294 2 98470000 18152 31614 19126 30488 12150 20570 14420 22033 30697 1435.9 17180 29858 19121 31213 12789 21082 15015 22087 29599 1862 1 1 1 1 1 1 1 1 1 1 3750 71 3312 3513 4166 4166 117 RLISPYKK 8 Phospho (STY) _RLIS(ph)PYKK_ RLIS(1)PYKK RLIS(37.74)PY(-37.74)KK 0 0 1 2 O14929 O14929 O14929 HAT1 Histone acetyltransferase type B catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.366027832031 3 362.202003 1083.58418 41102.5847593997 2.1044 0.00076223 632690 229.16 632700 229.16 591.365425422708 56.532 0.71211 56.532 56.156 56.868 0 67 23 4 0.843601962777419 0.00605384142387093 0.184838758672757 0.031069 1 13216 59.116 27.108 2 26401000 24401 46197 23392 44984 19607 25524 22174 32267 50612 3701.5 23086 43634 23571 45950 20184 26544 23227 32216 48733 4232.2 1 1 1 1 1 1 1 1 1 1 3751 71 3313 3514 4167 4167 117 RLKSSTSFANIQENSN 16 Phospho (STY) _RLKS(ph)STSFANIQENSN_ RLKS(0.611)S(0.13)T(0.13)S(0.13)FANIQENSN RLKS(6.73)S(-6.73)T(-6.73)S(-6.73)FANIQENS(-141.22)N 0 0 1 2 Q86WC4 Q86WC4 Q86WC4 OSTM1 Osteopetrosis-associated transmembrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.733703613281 3 625.958066 1874.85237 34885.480806429 1.8658 0.0011679 244070 152.77 244070 152.78 778.73257514482 59.28 0.4093 59.28 59.018 59.427 7.1054E-15 39 13 4 0.983872794443525 0.00188503671861026 0.0510540750339727 1.2553E-10 1 13872 194.77 177.49 5 15760000 10062 11020 10192 11157 9372.2 9263.9 9664 11341 11419 8524.1 9522.1 10411 10246 11417 9565.1 9412.2 9871.2 11552 11192 8288.9 1 1 1 1 1 1 1 1 1 1 3752 1388 3314 3515 4168 4168 2524;2525;2526 RLKSSTSFANIQENSN 16 2 Phospho (STY) _RLKS(ph)S(ph)TSFANIQENSN_ RLKS(0.651)S(0.474)T(0.393)S(0.367)FANIQENS(0.115)N RLKS(4.2)S(2.72)T(-2.72)S(-3.6)FANIQENS(-8.52)N 0 0 2 2 Q86WC4 Q86WC4 Q86WC4 OSTM1 Osteopetrosis-associated transmembrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.72509765625 3 652.61351 1954.8187 35457.4352540007 1.7684 0.0011541 234100 152.78 234100 152.78 805.723154459321 61.657 1.4874 61.657 61.187 62.674 0 102 50 3 0.820665830896291 0.00237344278928315 0.0246884365018568 0.014775 1 14493 68.134 56.111 10 16298000 15258 13555 14724 15776 14267 16963 12797 14422 16107 10584 14436 12817 14848 16082 14488 16938 13188 14884 15753 10300 1 1 1 1 1 1 1 1 1 1 3753 1388 3314 3516 4169 4169 2524;2525;2526 RLNHSPPQSSSR 12 Phospho (STY) _RLNHS(ph)PPQSSSR_ RLNHS(0.981)PPQS(0.011)S(0.006)S(0.002)R RLNHS(19.34)PPQS(-19.34)S(-22.07)S(-28.11)R 0 0 1 1 Q5T8P6 Q5T8P6 Q5T8P6 RBM26 RNA-binding protein 26 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 558.947509765625 3 482.55969 1444.65724 40955.5524435665 1.6304 0.00078678 158300 76.388 158300 76.388 558.947248093197 23.259 0.95338 23.259 22.574 23.527 3.5527E-15 115 32 5 0.911150050984622 0.00207947710921009 0.0381284744085406 0.039718 1 5128 48.468 36.255 4 31265000 1183 1574.2 1572.8 1670.6 1623.6 1282 2570.6 1614.9 1561.2 2059.6 1120.9 1487.7 1563.7 1703.2 1657.1 1310.4 2543.6 1669 1583.3 1976.7 1 1 1 1 1 1 1 1 1 1 3754 1189 3315 3517 4170 4170 2082 RLSAEGGDK 9 Phospho (STY) _RLS(ph)AEGGDK_ RLS(1)AEGGDK RLS(85.29)AEGGDK 0 0 1 1 A7E2V4 A7E2V4 A7E2V4 ZSWIM8 Zinc finger SWIM domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 490.928894042969 3 338.153489 1011.43864 45462.2384925921 0.71588 0.00024208 451790 152.78 451790 152.78 490.92895838115 36.044 0.41183 36.044 35.821 36.233 0 34 13 3 0.874694826500821 0.00252838394728242 0.0295393746431705 0.0060143 1 8097 85.287 19.713 1 23504000 20718 13613 19776 15394 10853 20015 8826.2 15448 16018 2193.6 19601 12870 19854 15772 11519 19803 9278.6 15739 15500 2423.1 1 1 1 1 1 1 1 1 1 1 3755 13 3316 3518 4171 4171 25 RLSAGLYR 8 Phospho (STY) _RLS(ph)AGLYR_ RLS(1)AGLYR RLS(50.68)AGLY(-50.68)R 0 0 1 1 Q13506 Q13506 Q13506 NAB1 NGFI-A-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.841369628906 2 508.257866 1014.50118 41173.4141325224 1.0564 0.00053693 225440 114.58 225440 114.58 622.839882797292 51.566 0.40649 51.566 51.312 51.718 0 21 13 2 0.967263335185775 0.00049031729650425 0.00358802009812313 0.023966 1 11987 65.348 31.426 2 10861000 12910 13806 13617 13390 12212 14311 12502 13916 13112 6320.2 12219 13040 13655 13788 12480 14310 12729 14164 12912 6273.3 1 1 1 1 1 1 1 1 1 1 3756 962 3317 3519 4172 4172 1618 RLSAPLPSSCGDPEK 15 Phospho (STY) _RLS(ph)APLPSSCGDPEK_ RLS(1)APLPSSCGDPEK RLS(42.07)APLPS(-42.07)S(-63.92)CGDPEK 0 0 1 1 Q96EP0 Q96EP0 Q96EP0 RNF31 E3 ubiquitin-protein ligase RNF31 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.369873046875 3 565.258688 1692.75424 36005.9541668346 2.1416 0.0012105 270280 152.78 270280 152.78 718.034159981322 58.418 0.70569 58.418 58.141 58.846 0 76 23 5 0.751283738611058 0.00428237982300975 0.063246274197938 6.1166E-07 1 13657 151.57 115.91 3 71603000 21333 11652 20479 13826 24959 23807 28350 21320 13805 22655 20183 11019 20732 14224 25098 23429 28297 22165 14238 21826 1 1 1 1 1 1 1 1 1 1 3757 1671 3318 3520 4173 4173 3077 RLSAQGQAISVVGSLSSMSPLEEEAPQAK 29 Phospho (STY) _RLS(ph)AQGQAISVVGSLSSMSPLEEEAPQAK_ RLS(1)AQGQAISVVGSLSSMSPLEEEAPQAK RLS(45.14)AQGQAIS(-45.14)VVGS(-101)LS(-155.6)S(-170.43)MS(-213.73)PLEEEAPQAK 0 0 1 1 Q92797 Q92797 Q92797 SYMPK Symplekin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 878.462585449219 4 763.377059 3049.47913 32971.0736826584 1.6221 0.0012383 150100 114.58 150100 114.58 878.461139119073 99 0.31566 99 98.835 99.151 -1.4211E-14 34 10 5 0.898095280951608 0.011879856227765 0.327671288632386 2.3099E-45 1 22968 340.41 308.82 6 43650000 10676 5914 10999 7136.7 11218 11066 14010 12303 7113.2 16859 10104 5593.8 11065 7316.3 11405 10964 13938 12801 7311.1 16159 1 1 1 1 1 1 1 1 1 1 3758 1622 3319 3521 4174 4174 2999;3000;3001 RLSELLR 7 Phospho (STY) _RLS(ph)ELLR_ RLS(1)ELLR RLS(62.41)ELLR 0 0 1 1 P08238 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.342712402344 2 483.760242 965.505931 40107.4523081395 1.3611 0.00065845 236860 114.58 236860 114.58 598.341782393181 76.571 0.75304 76.571 76.245 76.998 0 59 25 3 0.948250074165971 0.00183412709974007 0.0953364635940529 0.030695 1 17928 62.408 13.057 1 20800000 9167.5 9487.9 8815.1 10160 11388 7820.2 11071 9221.8 10095 4638.7 8673.4 8966.7 8927.5 10353 11399 7969.4 11258 9335.6 10002 4581.3 1 1 1 1 1 1 1 1 1 1 3759 331 3320 3522 4175 4175 540 RLSEQLAHTPTAFK 14 Phospho (STY) _RLS(ph)EQLAHTPTAFK_ RLS(1)EQLAHTPTAFK RLS(65.29)EQLAHT(-65.29)PT(-104.76)AFK 0 0 1 1 Q9UBF8 Q9UBF8 Q9UBF8 PI4KB Phosphatidylinositol 4-kinase beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.394653320313 3 560.281933 1677.82397 36892.6354864034 1.1835 0.00066312 272680 152.78 272680 152.78 713.057879090277 65.741 0.59467 65.741 65.454 66.049 0 76 19 5 0.953373076979054 0.00596389498349826 0.091435755197724 3.4474E-07 1 15408 163.45 138.73 3 90548000 21633 18206 23113 17163 23838 20294 24213 20943 20340 8502 20476 17192 23198 17736 24150 20226 24523 21239 20234 8490.4 1 1 1 1 1 1 1 1 1 1 3760 2120 3321 3523 4176 4176 3819 RLSESQLSFR 10 Phospho (STY) _RLS(ph)ESQLSFR_ RLS(1)ESQLSFR RLS(56.16)ES(-56.16)QLS(-135.39)FR 0 0 1 1 Q96PK6 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 511.266204833984 3 434.878248 1301.61291 43490.0216020935 0.88988 0.00038699 175650 76.388 175650 76.388 511.265968390206 61.751 0.53183 61.751 61.504 62.036 0 61 17 5 0.966537854953487 0.00211316768178012 0.0345459093066631 3.8498E-10 1 14459 203.85 113.24 3 58838000 6944.8 4318.4 7565.7 3918.8 6691.9 7127.6 5742.8 5135.8 5328.1 1329 6573.9 4077.2 7570 4099.7 6828.7 6978.7 5879.9 5268.8 5274.8 1370.2 1 1 1 1 1 1 1 1 1 1 3761 1723 3322 3524 4177 4177 3170 RLSESSALK 9 Phospho (STY) _RLS(ph)ESSALK_ RLS(1)ESSALK RLS(35.36)ES(-35.36)S(-43.08)ALK 0 0 1 1 Q96S55 Q96S55 Q96S55 WRNIP1 ATPase WRNIP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.928649902344 2 535.765721 1069.51689 35986.8110817103 1.745 0.00093492 427730 229.16 427730 229.16 764.92835344346 50.228 0.49472 50.228 49.982 50.477 7.1054E-15 44 16 4 0.984035720714073 0.0014048196564102 0.0249107069787875 5.7875E-06 1 11644 154.41 64.732 3 73238000 30168 33646 30397 35272 25989 30674 24403 28737 34543 7015.9 28548 31793 30538 36043 26621 30940 25194 29112 33654 7271.4 1 1 1 1 1 1 1 1 1 1 3762 1743 3323 3525 4178 4178 3198 RLSGEER 7 Phospho (STY) _RLS(ph)GEER_ RLS(1)GEER RLS(105.35)GEER 0 0 1 1 Q99549 Q99549 Q99549 MPHOSPH8 M-phase phosphoprotein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 385.861633300781 3 309.474563 925.401859 50609.3559988709 0.03164 9.7918E-06 246830 76.388 246830 76.388 385.862103992552 26.03 0.28647 26.03 25.901 26.187 0 24 9 3 0.82074466054236 0.00239898895352067 0.0183107781170642 0.0014766 1 5807 105.35 13.144 1 10325000 15197 13564 16417 13308 10740 15726 11341 13339 13431 5916.1 14385 12812 16392 13718 11245 15637 11573 13650 13163 5879.4 1 1 1 1 1 1 1 1 1 1 3763 1770 3324 3526 4179 4179 3257 RLSGLSSVGHNWR 13 Phospho (STY) _RLS(ph)GLSSVGHNWR_ RLS(0.944)GLS(0.028)S(0.028)VGHNWR RLS(15.32)GLS(-15.32)S(-15.32)VGHNWR 0 0 1 1 Q8WYQ4 Q8WYQ4 Q8WYQ4 C22orf15 Uncharacterized protein C22orf15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 445.234191894531 4 387.941232 1547.73582 46757.7152181225 0.70773 0.00027456 147680 57.292 147680 57.293 445.233768452403 26.321 0.92762 26.321 25.987 26.914 0 55 31 3 0.792287587493092 0.00806037489834218 0.0824938204206038 0.044441 1 5860 42.813 13.485 3 34115000 19328 19514 19631 17228 15763 17187 14582 16607 22796 3015.6 18290 18421 19700 17828 16216 17227 15125 16772 22144 3223.9 1 1 1 1 1 1 1 1 1 1 3764 1586 3325 3527 4180 4180 2916 RLSGSSLCSGSWVSADGFLR 20 Phospho (STY) _RLS(ph)GSSLCSGSWVSADGFLR_ RLS(0.997)GS(0.003)SLCSGSWVSADGFLR RLS(25.21)GS(-25.21)S(-41.09)LCS(-93.96)GS(-116.9)WVS(-157.07)ADGFLR 0 0 1 1 O75400 O75400 O75400 PRPF40A Pre-mRNA-processing factor 40 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.060791015625 3 741.340182 2220.99872 33355.6671765964 2.1252 0.0015755 103040 76.387 103040 76.389 818.061367816275 92.486 1.1343 92.486 92.198 93.332 0 115 38 6 0.940028329173856 0.00419757592059196 0.12167428560331 3.148E-11 1 21513 192.23 171.78 6 48929000 4997.4 6258.7 5555.5 6582.3 7129.7 6013.9 9186.8 6911.2 5517.5 17626 4730.9 5914.2 5585.1 6729.7 7168 6097.8 9152.1 7428.7 5599.8 16757 1 1 1 1 1 1 1 1 1 1 3765 184 3326 3528 4181 4181 320 RLSIIGPTSR 10 Phospho (STY) _RLS(ph)IIGPTSR_ RLS(1)IIGPTSR RLS(79.51)IIGPT(-79.51)S(-93.57)R 0 0 1 1 Q9Y2U5 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 470.267333984375 3 393.8797 1178.61727 45993.4253131867 -0.00035372 -1.3932E-07 193940 76.388 193940 76.388 470.267250979039 58.881 0.46859 58.881 58.636 59.105 -7.1054E-15 35 15 3 0.98604392711798 0.00129517970680835 0.0170567881398715 0.00010564 1 13791 126.25 92.564 3 9949500 5293.5 3405.6 5649.6 3716.2 4723.6 5595.4 4374.4 4471.8 4448.2 961.79 5010.3 3218.9 5656.4 3826.9 4843.4 5512.4 4471.6 4558 4385.9 1009.1 1 1 1 1 1 1 1 1 1 1 3766 2254 3327 3529 4182 4182 4162 RLSLDASAVDEEPCLPR 17 Phospho (STY) _RLS(ph)LDASAVDEEPCLPR_ RLS(1)LDASAVDEEPCLPR RLS(55.79)LDAS(-55.79)AVDEEPCLPR 0 0 1 1 I3L1I5 I3L1I5 I3L1I5 Putative uncharacterized protein LOC100996504 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 746.366638183594 3 669.978362 2006.91326 35322.9970280308 1.9222 0.0012878 114010 76.387 114020 76.388 746.366152472616 74.601 0.75988 74.601 74.33 75.09 0 42 25 2 0.99014216060037 0.00449747158833191 0.0601456060684089 7.397E-16 1 17502 223.67 200.11 2 34506000 11020 6512.8 11218 7335.4 7180.1 12037 8019.8 9441.5 7545 9533.4 10429 6157.1 11236 7557.1 7536.2 11841 8110.1 9858.3 7464.8 9195.3 1 1 1 1 1 1 1 1 1 1 3767 29 3328 3530 4183 4183 49 RLSLDSSCLDSSR 13 Phospho (STY) _RLS(ph)LDSSCLDSSR_ RLS(1)LDSSCLDSSR RLS(44.59)LDS(-44.59)S(-73.09)CLDS(-119.15)S(-124.49)R 0 0 1 1 Q9BWT3 Q9BWT3 Q9BWT3 PAPOLG Poly(A) polymerase gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 602.287170410156 3 525.899272 1574.67599 40508.4451316665 1.077 0.0005664 145250 76.388 145250 76.388 602.286470351689 58.121 0.55722 58.121 57.847 58.404 0 41 18 4 0.971650695553957 0.00146383520666841 0.0184095326107754 4.8585E-07 1 13601 152.01 129.52 5 17328000 7864 8313 8759.8 7592.6 9462.4 8449.2 10701 8660.1 8918.5 3917.2 7444.7 7848.9 8780 7853.6 9576.8 8440.8 10785 8796.6 8875.5 3889 1 1 1 1 1 1 1 1 1 1 3768 1854 3329 3531 4184 4184 3388 RLSLPADIR 9 Phospho (STY) _RLS(ph)LPADIR_ RLS(1)LPADIR RLS(114.7)LPADIR 0 0 1 1 Q00536;Q00537 Q00536 Q00536 CDK16;CDK17 Cyclin-dependent kinase 16;Cyclin-dependent kinase 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 450.588195800781 3 374.200663 1119.58016 47665.268155401 0.63825 0.00023883 204130 76.387 204130 76.387 450.588059950272 68.655 0.46632 68.655 68.359 68.825 0 51 15 5 0.987240468994561 0.00168135122172576 0.0170629996230725 0.00030749 1 16099 114.7 51.614 1 11760000 5498.9 3900.2 4897.3 3247.7 5890.1 4843.5 4951.4 5763.7 3176 394.65 5201.1 3680.7 4976.3 3400.1 5903.8 4795.9 5036.6 5757.7 3209.1 505 1 1 1 1 1 1 1 1 1 1 3769 822 3330 3532 4185 4185 1318 RLSLPGLLSQVSPR 14 Phospho (STY) _RLS(ph)LPGLLSQVSPR_ RLS(1)LPGLLSQVSPR RLS(71.16)LPGLLS(-71.16)QVS(-98.13)PR 0 0 1 1 Q96Q42 Q96Q42 Q96Q42 ALS2 Alsin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 611.68505859375 3 534.962424 1601.86544 40668.1909376688 1.1096 0.0005936 142790 76.388 142790 76.388 611.684632561162 99.264 0.25853 99.264 99.123 99.382 1.4211E-14 24 8 4 0.882145689777993 0.00168574204584189 0.0467771272672339 0.00019076 1 23072 105.95 77.976 3 12985000 2147.6 2769.1 1652.4 2871.2 3947.4 2281.7 4847.2 3896.6 3365.8 6257.3 2030.3 2616.4 1722.2 2932.3 3881.7 2345.4 4850.2 4034.5 3383.9 5982.2 1 1 1 1 1 1 1 1 1 1 3770 1728 3331 3533 4186 4186 3176 RLSLPGQLGALTSQPLHR 18 Phospho (STY) _RLS(ph)LPGQLGALTSQPLHR_ RLS(1)LPGQLGALTSQPLHR RLS(89.76)LPGQLGALT(-89.76)S(-118.23)QPLHR 0 0 1 1 Q12809 Q12809 Q12809 KCNH2 Potassium voltage-gated channel subfamily H member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.089416503906 3 675.364879 2023.07281 36533.8984432075 1.3447 0.00090819 113110 76.388 113110 76.389 751.752787395366 85.638 0.60002 85.638 85.329 85.929 0 64 20 4 0.989279808239199 0.00376780468277226 0.036871289319416 2.2842E-11 1 19983 205.07 176.85 3 21348000 3127 6242.7 3388.1 6333.1 4758.1 3117 3276.7 5505.8 6457.1 10279 2959.9 5897.8 3410.6 6445.4 4729.7 3317.2 3493.6 5739.9 6236.3 9806.4 1 1 1 1 1 1 1 1 1 1 3771 902 3332 3534 4187 4187 1487 RLSLPSSK 8 Phospho (STY) _RLS(ph)LPSSK_ RLS(1)LPSSK RLS(37.58)LPS(-37.58)S(-64.17)K 0 0 1 1 Q8NCD3 Q8NCD3 Q8NCD3 HJURP Holliday junction recognition protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 475.946136474609 3 323.170592 966.489946 45613.8688163799 0.82669 0.00026716 472740 152.78 472740 152.78 475.94582934751 58.337 0.55672 58.337 58.053 58.609 0 48 18 3 0.905893736850294 0.00194580018202013 0.0233117924280123 0.0010327 1 13635 103.46 47.744 3 30104000 16463 13210 17464 13639 12262 15089 12450 14850 13564 1101.9 15582 12481 17465 14001 12755 15059 12695 14938 13336 1381.2 1 1 1 1 1 1 1 1 1 1 3772 1495 3333 3535 4188 4188 2745 RLSNLPTVDPIAVCHELYNTIR 22 Phospho (STY) _RLS(ph)NLPTVDPIAVCHELYNTIR_ RLS(1)NLPTVDPIAVCHELYNTIR RLS(58.55)NLPT(-58.55)VDPIAVCHELY(-260)NT(-265.18)IR 0 0 1 1 Q86U86 Q86U86 Q86U86 PBRM1 Protein polybromo-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.628112792969 4 666.085919 2660.31457 36968.158586725 1.417 0.00094382 86011 57.291 86012 57.291 723.627266819933 99.218 0.22897 99.218 99.123 99.352 0 27 7 6 0.978225352831949 0.0182514360185415 0.287156956067595 4.4421E-32 1 23039 298.73 279.18 4 137460000 5760.6 10698 2603.8 4752.7 21653 4684.6 26726 13002 8810 16538 5439.2 10072 3046.2 5241.7 20903 4834.1 26471 13218 9452.7 15873 1 1 1 1 1 1 1 1 1 1 3773 1367 3334 3536 4189 4189 2478 RLSNVSLPGPGLSVPR 16 Phospho (STY) _RLS(ph)NVSLPGPGLSVPR_ RLS(0.994)NVS(0.006)LPGPGLSVPR RLS(22.37)NVS(-22.37)LPGPGLS(-49.37)VPR 0 0 1 1 O94806 O94806 O94806 PRKD3 Serine/threonine-protein kinase D3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.540588378906 2 864.961461 1727.90837 33629.385307929 1.6589 0.0014349 132470 114.58 132470 114.58 979.543122789859 78.269 0.31088 78.269 78.092 78.403 0 22 10 3 0.949997630811786 0.000632552604465138 0.0462586197506164 0.018749 1 18356 74.152 53.25 3 6218300 4181.7 3088.9 5045.4 4348 5991.5 4924.9 5650.2 4510.4 4768.9 24569 3960.1 2925.1 5041.7 4396.8 6018.7 4951.8 5743.7 5280.7 4742.8 23239 1 1 1 1 1 1 1 1 1 1 3774 219 3335 3537 4190 4190 381 RLSPAER 7 Phospho (STY) _RLS(ph)PAER_ RLS(1)PAER RLS(71.03)PAER 0 0 1 1 P41212 P41212 P41212 ETV6 Transcription factor ETV6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 379.870666503906 3 303.48317 907.42768 50475.3935512243 0.024116 7.3188E-06 251700 76.388 251700 76.388 379.870741126934 28.978 0.49578 28.978 28.695 29.191 0 47 16 4 0.908309064349395 0.00330328034039433 0.0375059068389043 0.013889 1 6427 71.03 34.445 1 21575000 17177 9836 20262 10644 15642 16793 15755 14183 10278 3129.7 16265 9296.3 20169 10978 16143 16531 15882 14422 10374 3275.3 1 1 1 1 1 1 1 1 1 1 3775 577 3336 3538 4191 4191 926 RLSPPSSSAASSYSFSDLNSTR 22 Phospho (STY) _RLS(ph)PPSSSAASSYSFSDLNSTR_ RLS(1)PPSSSAASSYSFSDLNSTR RLS(45.17)PPS(-45.17)S(-74.29)S(-96.81)AAS(-163.28)S(-181.28)Y(-242.94)S(-207.94)FS(-219.38)DLNS(-261.8)T(-266.48)R 0 0 1 1 P50402 P50402 P50402 EMD Emerin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.418334960938 3 799.695459 2396.06455 33160.7638944568 1.7409 0.0013922 95521 76.388 95523 76.389 876.417479776145 69.224 2.0717 69.224 67.916 69.988 0 260 70 6 0.990391846729423 0.00409200956233011 0.0296136373851603 3.8981E-32 2 16124 305 287.5 11 95987000 14647 23755 12996 22518 11149 14327 11738 19674 23618 34688 13854 22433 13160 23064 11443 14859 12246 20572 22800 33118 2 2 2 2 2 2 2 2 2 2 3776 662 3337 3539 4192;4193 4192 1118 RLSPSASPPR 10 2 Phospho (STY) _RLS(ph)PSAS(ph)PPR_ RLS(0.993)PS(0.026)AS(0.981)PPR RLS(21.25)PS(-17.12)AS(17.12)PPR 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.850769042969 2 614.267778 1226.521 36077.9112625605 2.0925 0.0012854 186530 114.58 186540 114.58 728.849322194822 38.716 2.2308 38.716 37.658 39.889 7.1054E-15 280 76 5 0.999025878132477 0.025277932830948 0.528452387784471 2.0128E-06 2 8775 141.45 118.89 3 320080000 148010 171110 153340 156240 152650 140680 160490 157470 164350 7949.7 140070 161560 154110 161080 155070 141930 163090 157540 162000 11130 2 2 2 2 2 2 2 2 2 2 3777 1436 3338 3540 4194;4195 4195 2647;2648 RLSQAEER 8 Phospho (STY) _RLS(ph)QAEER_ RLS(1)QAEER RLS(84.61)QAEER 0 0 1 1 Q96NL6 Q96NL6 Q96NL6 SCLT1 Sodium channel and clathrin linker 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.328369140625 2 534.74532 1067.47609 39742.9295311346 1.9641 0.0010503 214270 114.58 214280 114.58 649.326980991562 29.861 0.29557 29.861 29.721 30.016 0 22 9 3 0.724068322653977 0.000831133988740208 0.0244589242595235 0.012093 1 6657 84.605 55.808 1 7152900 10890 8162.7 13385 9164 11307 12868 12407 10974 9681.3 2850.6 10314 7716.7 13311 9407.7 11610 12714 12501 11167 9668.1 2938.2 1 1 1 1 1 1 1 1 1 1 3778 1721 3339 3541 4196 4196 3168 RLSQPESAEK 10 Phospho (STY) _RLS(ph)QPESAEK_ RLS(1)QPESAEK RLS(81.12)QPES(-81.12)AEK 0 0 1 1 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.635314941406 3 408.858854 1223.55473 41680.3578750607 1.4869 0.00060795 373660 152.78 373660 152.78 561.634550503013 39.411 0.95021 39.411 39.112 40.063 0 114 32 5 0.973483951620337 0.0135750307848935 0.223614891027461 2.8822E-08 1 8902 175.66 139.32 2 948120000 35716 24047 33154 25288 42132 29354 42141 32750 23473 3091.9 33787 22724 33641 25954 42208 29290 42385 32812 23952 3669.4 1 1 1 1 1 1 1 1 1 1 3779 2180 3340 3542 4197 4197 3935 RLSQRPTPEELEQR 14 Phospho (STY) _RLS(ph)QRPTPEELEQR_ RLS(1)QRPTPEELEQR RLS(34.44)QRPT(-34.44)PEELEQR 0 0 1 2 Q8IZ21 Q8IZ21 Q8IZ21 PHACTR4 Phosphatase and actin regulator 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.356872558594 3 606.966785 1817.87853 37481.5467244623 1.7456 0.0010595 125850 76.387 125850 76.388 683.688747591321 44.728 0.49775 44.728 44.51 45.007 0 43 16 3 0.980853432429081 0.00185314620751055 0.0218875560260344 0.0002735 1 10268 104.86 75.989 2 21736000 26955 31261 29157 31026 19922 25811 21055 27102 30664 5160.5 25514 29530 29122 31787 20787 26130 21640 27291 29848 5486.4 1 1 1 1 1 1 1 1 1 1 3780 1439 3341 3543 4198 4198 2669 RLSQRPTTEELEQR 14 Phospho (STY) _RLS(ph)QRPTTEELEQR_ RLS(1)QRPTTEELEQR RLS(45.9)QRPT(-47.41)T(-45.9)EELEQR 0 0 1 2 O75167 O75167 O75167 PHACTR2 Phosphatase and actin regulator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.020080566406 3 608.298423 1821.87344 36765.2600374542 1.0656 0.00064819 125570 76.386 125580 76.387 685.019547812189 40.655 0.35154 40.655 40.449 40.8 -7.1054E-15 34 11 4 0.984580716344126 0.00898122391403075 0.0417475656683322 8.4299E-05 1 9255 128.38 72.793 3 92287000 38799 25324 35973 21731 41279 40233 50636 32142 24120 7540.7 36703 23902 36468 22830 41684 39414 50368 32781 24924 7844.4 1 1 1 1 1 1 1 1 1 1 3781 172 3342 3544 4199 4199 299 RLSQSDEDVIR 11 Phospho (STY) _RLS(ph)QSDEDVIR_ RLS(0.979)QS(0.021)DEDVIR RLS(16.75)QS(-16.75)DEDVIR 0 0 1 1 Q9H7D7 Q9H7D7 Q9H7D7 WDR26 WD repeat-containing protein 26 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 813.910217285156 2 699.324663 1396.63477 NaN NaN NaN NaN NaN NaN NaN NaN 47.838 1 47.838 47.338 48.338 0 NaN NaN NaN 0.0003565 1 11094 117.48 80.808 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3782 1949 3343 3545 4200 4200 3542 RLSSASTGKPPLSVEDDFEK 20 Phospho (STY) _RLS(ph)SASTGKPPLSVEDDFEK_ RLS(0.71)S(0.289)AS(0.001)TGKPPLSVEDDFEK RLS(3.9)S(-3.9)AS(-29.22)T(-50.16)GKPPLS(-103.02)VEDDFEK 0 0 1 2 O75152 O75152 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.64892578125 4 561.520241 2242.05186 36095.8600885511 2.0089 0.001128 306080 171.87 306090 171.87 733.644390655499 73.098 1.208 73.098 72.604 73.812 0 171 41 7 0.858090467455195 0.00591356997601043 0.133735822765445 2.4173E-16 1 17101 229.7 178.81 5 107510000 15959 16171 17078 15423 18586 17268 23011 18694 18374 7163.8 15105 15272 17159 15911 18830 17258 23084 18912 18326 7178.2 1 1 1 1 1 1 1 1 1 1 3783 171 3344 3546 4201 4201 297 RLSSFVTK 8 Phospho (STY) _RLSS(ph)FVTK_ RLS(0.022)S(0.978)FVTK RLS(-16.44)S(16.44)FVT(-58.04)K 0 0 1 1 P27708 P27708 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 492.618133544922 3 339.842475 1016.5056 46133.7157948417 0.90789 0.00030854 449550 152.78 449550 152.78 492.617604858079 68.627 0.49515 68.627 68.388 68.884 0 36 16 3 0.869405082664281 0.000774310813516263 0.00571077808948766 0.011284 1 16113 74.611 32.922 3 6921300 7531.4 8090 9997.5 8493 9156 8414.9 8903.7 9214.4 9710 950.73 7135.9 7644.7 9914.4 8694.5 9338.4 8449.9 9097.4 9240.4 9546.7 1108.5 1 1 1 1 1 1 1 1 1 1 3784 489 3345 3547 4202 4202 802;803 RLSSFVTK 8 Phospho (STY) _RLS(ph)SFVTK_ RLS(0.5)S(0.5)FVTK RLS(0)S(0)FVT(-44.47)K 0 0 1 1 P27708 P27708 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.424926757813 2 509.260075 1016.5056 36216.1910748167 2.14 0.0010898 449990 229.16 449990 229.16 738.422909748257 70.242 0.57546 70.242 69.932 70.507 0 57 19 4 0.852040598629447 0.00218745731928498 0.0568790327355612 0.00147 1 16446 107.79 49.314 3 61631000 16228 13758 17135 12427 49588 14533 47798 24322 14079 11629 15360 12989 17596 12875 48348 14618 47817 24368 15322 11513 1 1 1 1 1 1 1 1 1 1 3785 489 3345 3547 4203 4203 802;803 RLSSLRASTSK 11 2 Phospho (STY) _RLSS(ph)LRAST(ph)SK_ RLS(0.116)S(0.884)LRAS(0.091)T(0.9)S(0.009)K RLS(-8.85)S(8.85)LRAS(-10.01)T(10.01)S(-19.99)K 0 0 2 2 P62753 P62753 P62753 RPS6 40S ribosomal protein S6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 456.995697021484 4 342.162638 1364.62144 45810.5956088931 0.47307 0.00016187 334870 114.58 334880 114.58 456.744185310835 46.932 0.48978 46.932 46.66 47.15 7.1054E-15 51 16 4 0.937824902813474 0.00298921550902049 0.0156771362345115 0.00014362 1 10822 106.79 58.674 10 29850000 12427 17395 13944 16095 11619 13016 12152 14855 20633 1778 11765 16425 13926 16555 11944 13210 12576 14883 19999 2018 1 1 1 1 1 1 1 1 1 1 3786 768 3346 3548 4204 4204 1249;1250;4494 RLSSQDVLR 9 Phospho (STY) _RLS(ph)SQDVLR_ RLS(0.93)S(0.07)QDVLR RLS(11.22)S(-11.22)QDVLR 0 0 1 1 Q92794 Q92794 Q92794 KAT6A Histone acetyltransferase KAT6A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.871887207031 2 577.289895 1152.56524 38626.1115205689 1.0325 0.00059606 198480 114.58 198480 114.58 691.871975897638 48.292 0.4388 48.292 48.066 48.505 0 36 14 3 0.849461514804341 0.00109514005729976 0.0225183176054658 0.030433 1 11209 60.301 25.8 2 16943000 22075 14837 21075 15303 18710 22878 17669 19178 15631 8484.1 20885 14019 21248 15806 19110 22563 17980 19636 15509 8432.6 1 1 1 1 1 1 1 1 1 1 3787 1621 3347 3549 4205 4205 2996 RLSSQFENSVYK 12 Phospho (STY) _RLS(ph)SQFENSVYK_ RLS(0.753)S(0.247)QFENSVYK RLS(4.84)S(-4.84)QFENS(-57.18)VY(-96.67)K 0 0 1 1 Q14149 Q14149 Q14149 MORC3 MORC family CW-type zinc finger protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.349914550781 3 513.239734 1536.69737 38790.3709911141 2.0637 0.0010592 297670 152.78 297670 152.78 666.349211343059 65.551 0.40421 65.551 65.343 65.748 0 32 13 3 0.978608367575442 0.00295623873697317 0.0377069726829754 0.00010697 1 15391 116.06 82.656 4 11608000 6256.3 7008.2 7497 6446.9 9078.5 7041.7 10621 8091.7 6683.8 12404 5924.7 6617.2 7500 6663.3 9137.6 7068.2 10629 8449.6 6761.9 11868 1 1 1 1 1 1 1 1 1 1 3788 987 3348 3550 4206 4206 1667 RLSSTPLPK 9 Phospho (STY) _RLS(ph)STPLPK_ RLS(0.984)S(0.011)T(0.004)PLPK RLS(19.38)S(-19.38)T(-23.43)PLPK 0 0 1 1 O75665 O75665 O75665 OFD1 Oral-facial-digital syndrome 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 512.968933105469 3 360.193396 1077.55836 44113.8112563983 1.2443 0.0004482 424150 152.78 424150 152.78 512.968490559345 56.787 0.4133 56.787 56.572 56.985 0 34 13 3 0.852929447163988 0.00385228797443108 0.0583964474316412 0.0068543 1 13260 82.85 50.353 3 26650000 16711 8137.1 15565 8103 7248.2 15840 6819.8 10701 8745.2 1605.4 15809 7686.6 15637 8446.3 7842.3 15470 7015.2 10982 8547.2 1759.3 1 1 1 1 1 1 1 1 1 1 3789 196 3349 3551 4207 4207 345 RLSTADPADASTIYAVVV 18 Phospho (STY) _RLS(ph)TADPADASTIYAVVV_ RLS(0.748)T(0.252)ADPADASTIYAVVV RLS(4.73)T(-4.73)ADPADAS(-47.21)T(-71.33)IY(-125.42)AVVV 0 0 1 1 O95866 O95866 O95866 G6B Protein G6b MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1080.05712890625 2 964.971888 1927.92922 30304.5496612245 1.6019 0.0015458 118740 114.58 118740 114.58 1080.05465132964 97.606 0.60451 97.606 97.329 97.933 0 63 20 4 0.827804389769288 0.00189517996426163 0.075420231482864 2.6211E-08 1 22650 173.98 134.99 5 20004000 1779.1 1614.2 1691.8 1896.7 4635.9 1793.2 4682.6 4042.1 2107.9 23236 1683.2 1526.4 1744.7 1928.6 4528.9 1873.9 4693.7 4667.5 2189 21973 1 1 1 1 1 1 1 1 1 1 3790 269 3350 3552 4208 4208 450 RLSTHSPFR 9 Phospho (STY) _RLS(ph)THSPFR_ RLS(0.735)T(0.265)HSPFR RLS(4.43)T(-4.43)HS(-51.92)PFR 0 0 1 1 P11171 P11171 P11171 EPB41 Protein 4.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 470.579772949219 3 394.192278 1179.55501 45325.5627961546 0.20958 8.2617E-05 193780 76.388 193780 76.388 470.580076119017 43.231 0.58162 43.231 42.969 43.551 0 62 19 5 0.792415303899481 0.00308284115282064 0.0544939977061297 0.00032465 1 9875 113.34 84.435 3 68350000 9542.8 25659 10284 25992 16226 10276 15502 16917 27200 349.16 9032.8 24241 10384 26415 16116 11086 16135 16722 26342 720.29 1 1 1 1 1 1 1 1 1 1 3791 360 3351 3553 4209 4209 583 RLSTSPDVIQGHQPR 15 Phospho (STY) _RLST(ph)SPDVIQGHQPR_ RLS(0.306)T(0.634)S(0.061)PDVIQGHQPR RLS(-3.16)T(3.16)S(-10.18)PDVIQGHQPR 0 0 1 1 Q9Y385 Q9Y385 Q9Y385 UBE2J1 Ubiquitin-conjugating enzyme E2 J1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.348449707031 3 590.959742 1769.8574 37676.960317782 1.8667 0.0011031 129260 76.388 129260 76.389 667.68173896748 44.036 0.64567 44.036 43.698 44.344 0 77 21 5 0.903941797647163 0.00855861271029716 0.151643155891743 1.5017E-15 1 10078 235.26 216.69 3 224930000 18509 20592 19631 19776 22825 25698 29111 24578 21328 8235.4 17518 19448 19754 20450 23056 25496 29118 24945 21374 8323.5 1 1 1 1 1 1 1 1 1 1 3792 2263 3352 3554 4210 4210 4848 RLSYNTASNK 10 Phospho (STY) _RLS(ph)YNTASNK_ RLS(1)YNTASNK RLS(36.29)Y(-61.5)NT(-36.29)AS(-96.47)NK 0 0 1 1 P49207 P49207 P49207 RPL34 60S ribosomal protein L34 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 564.635375976563 3 411.858965 1232.55507 41810.4414720962 1.4148 0.00058268 370940 152.78 370940 152.78 564.634395829841 43.441 0.51808 43.441 43.121 43.639 0 58 17 5 0.810717391425799 0.00831037192710709 0.0954026511710927 2.6968E-07 1 9923 172.43 134.71 4 147130000 58365 37297 58852 32566 51596 53719 56518 45825 34930 3582.1 55230 35206 59153 34067 52837 52809 56703 46380 35381 4433.5 1 1 1 1 1 1 1 1 1 1 3793 634 3353 3555 4211 4211 1049 RMHSQPR 7 Phospho (STY) _RMHS(ph)QPR_ RMHS(1)QPR RMHS(54.98)QPR 0 0 1 1 Q96MU7 Q96MU7 Q96MU7 YTHDC1 YTH domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 407.535675048828 3 331.147904 990.421883 49546.9920012891 0.46858 0.00015517 230680 76.388 230680 76.388 407.535653075667 19.609 0.55871 19.609 19.399 19.958 0 49 19 3 0.974554874413715 0.0100836299908906 0.135090473131352 0.02938 1 4469 54.982 32.242 1 1310000 1756.4 1360.2 2166.2 1177 1646 1445.1 1354.4 1512.8 1388.5 1110.6 1663.5 1283.9 2150.7 1224 1697 1439.5 1393.6 1548.3 1368.6 1080.8 1 1 1 1 1 1 1 1 1 1 3794 1716 3354 3556 4212 4212 3160 RMNSTGGQTPR 11 Phospho (STY) _RMNS(ph)TGGQTPR_ RMNS(0.794)T(0.201)GGQT(0.005)PR RMNS(5.97)T(-5.97)GGQT(-22.21)PR 0 0 1 1 Q96ST2 Q96ST2 Q96ST2 IWS1 Protein IWS1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.361877441406 2 642.779368 1283.54418 36204.2691035252 1.8083 0.0011624 178260 114.58 178260 114.58 757.360825002005 24.492 0.20015 24.492 24.368 24.569 3.5527E-15 14 6 3 0.970026007618839 0.000312952689907194 0.00315610901923145 0.050247 1 5488 53.034 38.615 3 3716000 2712.1 1082.8 2763.7 1497.5 1941.4 3015.8 1737.4 1940.6 1130.6 1164.6 2566.5 1025.3 2769.5 1536.7 2015.3 2943.8 1761.7 2023.3 1141.3 1141.5 1 1 1 1 1 1 1 1 1 1 3795 1751 3355 3557 4213 4213 3212 RMSGEPIQTVESIR 14 Oxidation (M),Phospho (STY) _RM(ox)S(ph)GEPIQTVESIR_ RM(1)SGEPIQTVESIR RMS(1)GEPIQTVESIR RM(126.29)SGEPIQTVESIR RMS(80.86)GEPIQT(-80.86)VES(-108.07)IR 0 1 1 1 Q5VT52 Q5VT52 Q5VT52 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.322143554688 3 566.934205 1697.78078 39425.9783752706 1.6251 0.00092134 134740 76.387 134740 76.388 643.321305101379 56.993 0.87497 56.993 56.603 57.478 0 93 29 4 0.849603344154814 0.00212694487857432 0.0135968032489317 5.3693E-05 1 13298 126.29 105.91 3 24996000 9939 8731.8 9265.4 9252.5 11032 9702.3 8641.3 10674 10518 22965 9402.3 8251.6 9385.6 9475.7 11059 9760.5 8962.3 11361 10298 21872 1 1 1 1 1 1 1 1 1 1 3796 1201 3356 3558 4214 4214 157 2103 RMSGEPIQTVESIR 14 Phospho (STY) _RMS(ph)GEPIQTVESIR_ RMS(1)GEPIQTVESIR RMS(57.8)GEPIQT(-57.8)VES(-77.17)IR 0 0 1 1 Q5VT52 Q5VT52 Q5VT52 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 637.991516113281 3 561.602567 1681.78587 38284.8281137991 1.6262 0.00091329 136020 76.388 136020 76.388 637.990040069422 66.098 1.1453 66.098 65.602 66.747 0 108 38 4 0.465618924084504 0.00294911754627769 0.0550258512445017 0.0041668 1 15471 91.774 68.9 3 50090000 15459 10663 16469 9684.3 12164 17403 9169.2 13774 11056 5529 14632 10067 16467 10127 12558 17064 9528.9 14124 10829 5525 1 1 1 1 1 1 1 1 1 1 3797 1201 3356 3559 4215 4215 2103 RNSAPESILLVPPTWPK 17 Phospho (STY) _RNS(ph)APESILLVPPTWPK_ RNS(0.998)APES(0.002)ILLVPPTWPK RNS(27.21)APES(-27.21)ILLVPPT(-72.42)WPK 0 0 1 1 Q13469 Q13469 Q13469 NFATC2 Nuclear factor of activated T-cells, cytoplasmic 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.458374023438 3 662.346714 1984.01831 35299.0909184413 1.6677 0.0011046 230660 152.78 230660 152.78 815.456449653806 99.2 0.51829 99.2 98.948 99.466 0 46 17 4 0.949874973575801 0.00426174188509529 0.0806991101110178 0.00010233 1 23014 105.34 87.423 3 11650000 6153.8 9953.2 6422.6 12170 9615.3 5551.3 9869.5 8986.6 12334 23001 5824.1 9415.1 6491.3 12254 9575 5946.1 10102 9574.2 12065 21866 1 1 1 1 1 1 1 1 1 1 3798 959 3357 3560 4216 4216 1613 RNSCNVGGGGGGFK 14 Phospho (STY) _RNS(ph)CNVGGGGGGFK_ RNS(1)CNVGGGGGGFK RNS(122.53)CNVGGGGGGFK 0 0 1 1 Q7L2J0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.97998046875 3 482.869647 1445.58711 38857.9156473907 1.4263 0.00068873 316390 152.78 316390 152.78 635.645417693618 40.482 0.56255 40.482 40.21 40.772 0 63 17 5 0.985370858360399 0.00542934359475672 0.0403288267094526 9.4672E-05 1 9196 122.53 102.4 1 89835000 38984 20633 40436 22678 30582 39794 28523 30503 21981 3873.6 36894 19503 40508 23435 31581 39014 28953 31073 21966 4353.4 1 1 1 1 1 1 1 1 1 1 3799 1317 3358 3561 4217 4217 2357 RNSFSENEK 9 Phospho (STY) _RNS(ph)FSENEK_ RNS(1)FSENEK RNS(37.52)FS(-37.52)ENEK 0 0 1 1 Q9HCG8 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 550.275939941406 3 397.499437 1189.47648 41885.2390634231 1.5118 0.00060095 384340 152.78 384340 152.78 550.275022960293 35.298 0.9057 35.298 34.915 35.821 0 95 30 6 0.996051555316875 0.00453554947425521 0.0260104739179648 3.2898E-15 1 7895 249.04 210.24 2 384170000 34143 33621 33568 30373 28656 34508 25970 30234 33948 2895.7 32306 31742 33769 31451 29340 34356 26782 30579 33158 3426.3 1 1 1 1 1 1 1 1 1 1 3800 1986 3359 3562 4218 4218 3608 RNSFTPLSSSNTIR 14 Phospho (STY) _RNS(ph)FTPLSSSNTIR_ RNS(1)FTPLSSSNTIR RNS(43.31)FT(-43.31)PLS(-92.73)S(-101.74)S(-106.06)NT(-124.72)IR 0 0 1 1 O60825 O60825 O60825 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.655517578125 3 553.933193 1658.77775 39109.6975023699 1.2859 0.00071232 137900 76.388 137900 76.388 630.320913698561 55.924 0.50312 55.924 55.683 56.186 7.1054E-15 50 16 5 0.983912213103268 0.00266171837774862 0.0167821127457906 6.1269E-07 1 13042 153.68 106.75 6 52735000 8434.4 13858 7396.2 14911 12190 8485.6 14427 12801 13929 4479.9 7977.2 13097 7570.1 15142 12118 8854.8 14564 12808 13765 4514.6 1 1 1 1 1 1 1 1 1 1 3801 157 3360 3563 4219 4219 267 RNSLEGYSR 9 Phospho (STY) _RNS(ph)LEGYSR_ RNS(1)LEGYSR RNS(59.33)LEGY(-122.72)S(-59.33)R 0 0 1 1 Q8NDT2 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.838562011719 2 581.256052 1160.49755 37339.265557897 1.6559 0.00096248 197130 114.58 197130 114.58 695.837733681565 33.013 0.4614 33.013 32.794 33.256 0 43 15 4 0.982420193768967 0.00138704997031771 0.0662500593659043 1.0078E-06 1 7367 172.28 77.476 3 23784000 14092 10644 14879 9363.8 16338 14544 16685 15524 9672.2 3064 13337 10048 14955 9775.9 16492 14365 16776 15626 9841 3244.4 1 1 1 1 1 1 1 1 1 1 3802 1508 3361 3564 4220 4220 2770 RNSLPQIPMLNLEAR 15 Oxidation (M),Phospho (STY) _RNS(ph)LPQIPM(ox)LNLEAR_ RNSLPQIPM(1)LNLEAR RNS(1)LPQIPMLNLEAR RNSLPQIPM(53.6)LNLEAR RNS(53.6)LPQIPMLNLEAR 0 1 1 1 Q14289 Q14289 Q14289 PTK2B Protein-tyrosine kinase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.033752441406 3 616.644766 1846.91247 37785.3840648274 1.8749 0.0011562 123880 76.388 123880 76.389 693.032470683538 82.317 0.80239 82.317 81.824 82.626 0 99 27 4 0.803633103161676 0.00194081456669684 0.0927138067982047 0.025333 1 19197 53.603 27.167 1 26389000 4880.8 4021.5 4831.9 4502.8 4815.2 5322.1 5464.3 4876 4803.9 10711 4618.3 3801.7 4869.3 4607.1 4896 5312.6 5513 5231.1 4768.1 10199 1 1 1 1 1 1 1 1 1 1 3803 1006 3362 3565 4221 4221 132 1707 RNSLPQIPMLNLEAR 15 Oxidation (M),Phospho (STY) _RNS(ph)LPQIPM(ox)LNLEAR_ RNSLPQIPM(1)LNLEAR RNS(1)LPQIPMLNLEAR RNSLPQIPM(128.38)LNLEAR RNS(128.38)LPQIPMLNLEAR 0 1 1 1 Q14289 Q14289 Q14289 PTK2B Protein-tyrosine kinase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.032836914063 3 616.644766 1846.91247 37754.9539064304 1.5952 0.00098366 123880 76.388 123880 76.389 693.032398512784 82.934 0.69059 82.934 82.572 83.262 0 95 23 5 0.990179297555625 0.00685920887547394 0.0450170298589534 3.9842E-05 1 19374 128.38 110.46 1 36948000 6141 4670.2 5616.6 4250.1 5228.9 6563.1 5250.7 5983.8 4258.4 11062 5809 4409.4 5681 4426.7 5328.5 6488.9 5316.5 6358 4243.8 10555 1 1 1 1 1 1 1 1 1 1 3804 1006 3362 3565 4222 4222 132 1707 RNSLPQIPMLNLEAR 15 Phospho (STY) _RNS(ph)LPQIPMLNLEAR_ RNS(1)LPQIPMLNLEAR RNS(153.14)LPQIPMLNLEAR 0 0 1 1 Q14289 Q14289 Q14289 PTK2B Protein-tyrosine kinase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.702026367188 3 611.313127 1830.91755 38087.4946560389 1.692 0.0010343 124960 76.388 124960 76.389 688.035070601089 93.447 1.5746 93.447 92.799 94.373 0 167 42 5 0.818812305840365 0.0071431313473805 0.128739530168456 5.7232E-07 2 21705 153.14 124.51 1 70037000 24226 16530 27580 16131 16038 25426 17668 21864 17299 54898 22936 15613 27441 16737 16980 25130 17896 23723 17084 52199 2 2 2 2 2 2 2 2 2 2 3805 1006 3362 3566 4223;4224 4223 1707 RNSLQHHQDDTK 12 Phospho (STY) _RNS(ph)LQHHQDDTK_ RNS(1)LQHHQDDTK RNS(78.93)LQHHQDDT(-78.93)K 0 0 1 1 Q6ZU80 Q6ZU80 Q6ZU80 CEP128 Centrosomal protein of 128 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.257293701172 4 390.42441 1557.66853 43374.792534791 1.1545 0.00045076 293480 114.58 293480 114.58 505.256448440766 23.618 0.31774 23.618 23.498 23.816 0 29 10 4 0.976871774738292 0.00413325776254846 0.0309836746179318 9.995E-06 1 5303 136.35 88.17 2 4944600 4229.6 1797 4781.3 1724.1 2963.8 4597.6 1958.1 3520.7 1850.5 1693.6 4004.4 1697.1 4758.6 1820.9 3100.7 4469.9 2038.5 3624.3 1830.5 1676.2 1 1 1 1 1 1 1 1 1 1 3806 1302 3363 3567 4225 4225 2323 RNSLSGSSTGSQEQR 15 Phospho (STY) _RNS(ph)LSGSSTGSQEQR_ RNS(1)LSGSSTGSQEQR RNS(33.97)LS(-33.97)GS(-48.12)S(-54.13)T(-59.57)GS(-64.11)QEQR 0 0 1 1 Q96J92 Q96J92 Q96J92 WNK4 Serine/threonine-protein kinase WNK4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.302490234375 3 558.579478 1672.7166 39547.1803437229 1.8061 0.0010089 136750 76.387 136750 76.388 634.96599725756 23.884 0.23381 23.884 23.787 24.021 3.5527E-15 15 7 3 0.902387032218009 0.000812616497421967 0.0147334072706389 0.0123 1 5362 72.421 59.543 6 2443200 1106.3 2038.3 500.04 1784.4 1055 1069.2 1820.4 942.8 1686.3 1318.7 1044.6 1924.1 546.6 1836.1 1048.6 1104.5 1812.6 990.33 1669.5 1263.6 1 1 1 1 1 1 1 1 1 1 3807 1695 3364 3568 4226 4226 3113 RNSLTGEEGQLAR 13 Phospho (STY) _RNS(ph)LTGEEGQLAR_ RNS(0.995)LT(0.005)GEEGQLAR RNS(23.03)LT(-23.03)GEEGQLAR 0 0 1 1 Q9BX95 Q9BX95 Q9BX95 SGPP1 Sphingosine-1-phosphate phosphatase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 870.43603515625 2 755.854119 1509.69368 33786.7814653965 1.7887 0.001352 151590 114.58 151590 114.58 870.435171608341 41.62 0.63101 41.62 41.139 41.77 0 55 21 4 0.978719561468706 0.00101207662849972 0.0192535359791534 6.4983E-06 1 9504 138.07 117.94 2 23011000 8549.1 19077 8028.2 18221 19358 9925.1 16235 15447 19083 4684.3 8087.7 18017 8246.7 18628 18934 10397 16754 15422 18708 4768.3 1 1 1 1 1 1 1 1 1 1 3808 1859 3365 3569 4227 4227 3393 RNSNSPPSPSSMNQR 15 Oxidation (M),Phospho (STY) _RNS(ph)NSPPSPSSM(ox)NQR_ RNSNSPPSPSSM(1)NQR RNS(0.954)NS(0.046)PPSPSSMNQR RNSNSPPSPSSM(57.41)NQR RNS(13.16)NS(-13.16)PPS(-45.21)PS(-54.97)S(-54.97)MNQR 0 1 1 1 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.303649902344 3 585.580713 1753.72031 38411.9011238419 2.2422 0.001313 130450 76.387 130450 76.388 662.301932021052 22.714 0.49066 22.714 22.401 22.891 0 40 16 3 0.969270927187914 0.00287572426975283 0.0286648674551042 0.020334 1 5113 57.41 45.937 5 3961000 1078.6 513.28 1721.9 468.85 940.27 1913.6 401.3 1067.6 483.16 1081 1023.1 484.63 1686.3 507.32 992.8 1845 436.62 1136.2 473.27 1042.6 1 1 1 1 1 1 1 1 1 1 3809 1350 3366 3570 4228 4228 166 2443;2444;2445 RNSNSPPSPSSMNQR 15 Oxidation (M),2 Phospho (STY) _RNS(ph)NSPPS(ph)PSSM(ox)NQR_ RNSNSPPSPSSM(1)NQR RNS(0.948)NS(0.052)PPS(0.618)PS(0.207)S(0.175)MNQR RNSNSPPSPSSM(63.61)NQR RNS(12.69)NS(-12.69)PPS(4.77)PS(-4.77)S(-5.5)MNQR 0 1 2 1 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.959045410156 3 612.236157 1833.68664 37801.8952822115 1.9238 0.0011778 124770 76.387 124770 76.389 688.623992180545 23.164 0.98118 23.164 22.546 23.527 0 78 33 4 0.947694146684592 0.00397038844896266 0.0474967476848261 0.019311 1 5181 63.606 50.943 10 3909400 1096.7 0 1566.3 486.53 490.78 1344.1 1076.8 944.65 536.11 1404.4 1039.5 0 1538.1 483.64 569.32 1306.6 1053.2 1005.3 551.91 1344.3 1 0 1 1 1 1 1 1 1 1 3810 1350 3366 3571 4229 4229 166 2443;2444;2445 RNSNSPPSPSSMNQR 15 Phospho (STY) _RNS(ph)NSPPSPSSMNQR_ RNS(0.982)NS(0.018)PPSPSSMNQR RNS(17.3)NS(-17.3)PPS(-82.22)PS(-100.3)S(-110.6)MNQR 0 0 1 1 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.637939453125 3 580.249075 1737.7254 39361.1504628995 1.7344 0.0010064 131650 76.388 131650 76.389 656.636912233931 29.027 0.58853 29.027 28.751 29.34 0 60 19 4 0.988465643871487 0.00178037204875956 0.0263538658811337 8.5758E-07 1 6460 141.74 112.85 5 12716000 10600 4610.1 10126 4689.6 5260.1 9991.2 6403.8 6686.7 5297.6 4223.2 10028 4355.5 10166 4895.5 5640.4 9744.6 6433.3 6962.6 5274.1 4131.4 1 1 1 1 1 1 1 1 1 1 3811 1350 3366 3572 4230 4230 2443;2444;2445 RNSNSPPSPSSMNQR 15 2 Phospho (STY) _RNS(ph)NSPPS(ph)PSSMNQR_ RNS(1)NSPPS(0.993)PS(0.006)S(0.001)MNQR RNS(52.74)NS(-51.13)PPS(22.39)PS(-22.39)S(-29.14)MNQR 0 0 2 1 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.292724609375 3 606.904518 1817.69173 37891.7307891392 1.8032 0.0010944 125860 76.387 125870 76.388 683.2917692323 30.927 1.6926 30.927 29.665 31.358 0 171 56 5 0.946633087386255 0.00569931367825658 0.122058788510014 9.3437E-16 2 6904 214.05 178.22 10 33426000 21322 14150 24060 13680 17567 22830 17552 17137 14759 6528.7 20186 13365 23990 14222 18208 22416 17791 17607 14681 6544.2 2 2 2 2 2 2 2 2 2 2 3812 1350 3366 3573 4231;4232 4232 2443;2444;2445 RNSRDGDPLPSSLSCK 16 Phospho (STY) _RNS(ph)RDGDPLPSSLSCK_ RNS(1)RDGDPLPSSLSCK RNS(43.89)RDGDPLPS(-43.89)S(-49.72)LS(-57.3)CK 0 0 1 2 P53602 P53602 P53602 MVD Diphosphomevalonate decarboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.796142578125 4 467.96347 1867.82477 41215.3890054757 1.5601 0.00073006 244850 114.58 244850 114.58 582.545113404265 52.447 0.57154 52.447 52.155 52.726 -7.1054E-15 61 19 4 0.543313386151071 0.00135624626235265 0.0219237471041608 0.01558 1 12232 62.847 46.131 4 15493000 9712.1 9436.6 9401 10973 9867 8617.3 9737.5 10027 10571 2295 9189 8923.1 9489.6 11135 9984.5 8764.7 9941 10073 10395 2393.1 1 1 1 1 1 1 1 1 1 1 3813 703 3367 3574 4233 4233 1181 RNSSEASSGDFLDLK 15 Phospho (STY) _RNS(ph)SEASSGDFLDLK_ RNS(0.999)S(0.001)EASSGDFLDLK RNS(30.19)S(-30.19)EAS(-72.54)S(-98.71)GDFLDLK 0 0 1 1 Q9UK76 Q9UK76 Q9UK76 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.362548828125 3 569.252479 1704.73561 36682.3231283942 2.3351 0.0013293 268380 152.78 268380 152.78 722.36182837317 74.986 3.301 74.986 74.479 77.78 0 377 113 7 0.995213510429191 0.010359784227502 0.165793879153604 5.6096E-16 3 17537 233.56 190.11 4 815880000 48440 61964 54796 64596 47686 58170 45922 60066 70639 26870 45860 58550 54720 66061 48810 58668 47506 60987 68651 26691 3 3 3 3 3 3 3 3 3 3 3814 2168 3368 3575 4234;4235;4236 4234 3905 RNSTTIMSR 9 Oxidation (M),Phospho (STY) _RNS(ph)TTIM(ox)SR_ RNSTTIM(1)SR RNS(0.561)T(0.217)T(0.217)IMS(0.004)R RNSTTIM(44.85)SR RNS(4.12)T(-4.12)T(-4.12)IMS(-21.47)R 0 1 1 1 Q7Z309 Q7Z309 Q7Z309 FAM122B Protein FAM122B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.840270996094 2 581.257737 1160.50092 37016.7076143105 1.9725 0.0011465 197130 114.58 197130 114.58 695.839259119675 23.499 0.28891 23.499 23.324 23.613 3.5527E-15 21 9 3 0.990863588695117 0.00219659471565916 0.0848183297744836 0.048484 1 5261 44.847 11.79 4 2569200 1863.9 2467.8 2232.7 1761.9 2570.6 2263.4 2031.2 1990.9 1678.9 1564.1 1765.1 2327.3 2230.1 1860.2 2580.8 2245.8 2083.8 2054.7 1671.5 1518.9 1 1 1 1 1 1 1 1 1 1 3815 1329 3369 3576 4237 4237 163 2388 RNSVERPAEPVAGAATPSLVEQQK 24 Phospho (STY) _RNS(ph)VERPAEPVAGAATPSLVEQQK_ RNS(1)VERPAEPVAGAATPSLVEQQK RNS(62.42)VERPAEPVAGAAT(-62.42)PS(-110.37)LVEQQK 0 0 1 2 Q9BTC0 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.413879394531 4 654.330075 2613.29119 35796.0050061546 1.537 0.0010057 175110 114.58 175110 114.58 769.162194805519 55.925 0.62597 55.925 55.653 56.279 0 91 20 6 0.828694064087255 0.00443582823578324 0.0443787964114123 1.8698E-08 1 13033 169.65 139.89 3 140440000 27102 16368 30804 14749 20796 30222 18954 21377 16791 54246 25659 15453 30679 15491 21667 29594 19323 23420 16660 51574 1 1 1 1 1 1 1 1 1 1 3816 1822 3370 3577 4238 4238 3337 RNSVERPAEPVAGAATPSLVEQQK 24 Phospho (STY) _RNS(ph)VERPAEPVAGAATPSLVEQQK_ RNS(1)VERPAEPVAGAATPSLVEQQK RNS(94.45)VERPAEPVAGAAT(-94.45)PS(-123.54)LVEQQK 0 0 1 2 Q9BTC0 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1025.21630859375 3 872.104341 2613.29119 31740.6525894542 1.4387 0.0012547 175180 152.78 175180 152.78 1025.21377292376 55.965 0.41349 55.965 55.743 56.156 0 43 13 5 0.946099015642378 0.00136324158426719 0.01428912591069 2.082E-12 1 13101 204.53 181.08 3 46090000 9987.3 5702.1 10874 5351.3 8068.9 11175 8842.7 9098.2 6298.7 7264.9 9453.8 5384.6 10866 5609.5 8362.5 10929 8894.3 9425.5 6322.8 7051.3 1 1 1 1 1 1 1 1 1 1 3817 1822 3370 3577 4239 4239 3337 RNSVTPLASPEPTK 14 Phospho (STY) _RNS(ph)VTPLASPEPTK_ RNS(0.978)VT(0.022)PLASPEPTK RNS(16.54)VT(-16.54)PLAS(-67.9)PEPT(-103.11)K 0 0 1 1 Q16875 Q16875 Q16875 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.0380859375 3 526.262539 1575.76579 37976.3260456306 1.3229 0.00069619 290300 152.77 290300 152.78 679.372029617325 50.882 0.54687 50.882 50.589 51.136 0 63 18 5 0.728320341050492 0.00555950737679407 0.0369297469897344 4.5044E-05 1 11842 131.09 92.724 4 58095000 32084 29423 35573 26278 31190 32650 30811 31356 29137 6775.2 30373 27777 35565 27276 31904 32439 31336 31706 28820 7105.3 1 1 1 1 1 1 1 1 1 1 3818 1116 3371 3578 4240 4240 1941 RNSYTNCLQK 10 Phospho (STY) _RNS(ph)YTNCLQK_ RNS(1)YTNCLQK RNS(44.51)Y(-53.48)T(-44.51)NCLQK 0 0 1 1 Q92766 Q92766 Q92766 RREB1 Ras-responsive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.309448242188 3 455.198993 1362.57515 39546.1985439652 1.2568 0.00057212 335620 152.78 335620 152.78 607.974262647204 45.345 0.42937 45.345 45.036 45.466 0 51 14 5 0.891765912963633 0.0034955612221238 0.0155320071149279 1.538E-06 1 10420 155.43 119.47 3 50846000 31161 20429 29278 19938 38258 31710 39391 34107 21256 4260.7 29479 19295 29701 20691 38293 31297 39546 34247 21743 4801.4 1 1 1 1 1 1 1 1 1 1 3819 1618 3372 3579 4241 4241 2988 RPAAAAAAGSASPR 14 Phospho (STY) _RPAAAAAAGSAS(ph)PR_ RPAAAAAAGSAS(1)PR RPAAAAAAGS(-62.03)AS(62.03)PR 0 0 1 1 Q96S55 Q96S55 Q96S55 WRNIP1 ATPase WRNIP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 781.907958984375 2 667.322257 1332.62996 34885.0998060435 1.5222 0.0010158 171700 114.58 171710 114.58 781.904081218507 25.972 0.37196 25.972 25.815 26.187 0 22 12 2 0.973122755279447 0.00216728199554517 0.0147203987860033 2.9537E-10 1 5778 184.59 140.17 2 41584000 4898.5 7353.2 5321 6929.4 3949.9 4914 3125.1 4990.2 7206.4 1037.9 4636.9 6943.9 5315.4 7108.3 4081.5 5018.4 3332.5 5033.9 6937.4 1092.8 1 1 1 1 1 1 1 1 1 1 3820 1743 3373 3580 4242 4242 3199 RPAEATSSPTSPERPR 16 Phospho (STY) _RPAEATSSPTS(ph)PERPR_ RPAEATSSPT(0.047)S(0.952)PERPR RPAEAT(-68.2)S(-42.52)S(-39.91)PT(-13.03)S(13.03)PERPR 0 0 1 2 Q9BU76 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.677734375 3 606.954656 1817.84214 37725.5901894691 1.3589 0.00082477 125850 76.388 125860 76.389 683.342439818701 25.639 0.51703 25.639 25.327 25.844 -3.5527E-15 66 17 5 0.880896878366088 0.0187727742562872 0.190375009354523 2.4934E-10 1 5708 176.44 144.62 5 129060000 13053 13877 12822 13782 13383 13236 16124 14516 14587 2837.6 12350 13109 12936 14148 13585 13313 16239 14597 14459 3007.9 1 1 1 1 1 1 1 1 1 1 3821 1831 3374 3581 4243 4243 3349;3350 RPAEATSSPTSPERPR 16 2 Phospho (STY) _RPAEATSS(ph)PTS(ph)PERPR_ RPAEAT(0.047)S(0.186)S(0.748)PT(0.057)S(0.961)PERPR RPAEAT(-12.06)S(-6.12)S(6.12)PT(-14.36)S(14.36)PERPR 0 0 2 2 Q9BU76 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.33349609375 3 633.6101 1897.80847 37064.4722687308 1.3959 0.00088447 120560 76.388 120560 76.388 710.331986118845 26.607 1.7071 26.607 26.016 27.723 -3.5527E-15 185 58 4 0.982975324128294 0.0024552064174119 0.028320657287394 0.015099 2 5850 67.396 48.347 10 19816000 5548.1 6274.4 5461.3 5806.1 5728.2 5873.9 4745.7 5181.8 6985.5 3493.2 5249.6 5924.6 5505.7 5991.2 5785.5 5882.6 4939.3 5329.8 6797.6 3409.2 2 2 2 2 2 2 2 2 2 2 3822 1831 3374 3582 4244;4245 4244 3349;3350 RPASPALLLPPCMLK 15 Phospho (STY) _RPAS(ph)PALLLPPCMLK_ RPAS(1)PALLLPPCMLK RPAS(103.17)PALLLPPCMLK 0 0 1 1 Q9HAW0 Q9HAW0 Q9HAW0 BRF2 Transcription factor IIIB 50 kDa subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.082702636719 3 581.973166 1742.89767 36902.4251584285 1.91 0.0011116 262510 152.77 262510 152.78 735.082813697413 95.415 1.0065 95.415 95.11 96.116 0 141 34 5 0.9308713648475 0.000669534127168504 0.00745044153151013 0.00018396 1 22164 103.17 80.972 1 29000000 6858.3 8105.6 7400.2 8144.6 5441.6 6147.6 5001.6 7972.7 8106.9 15533 6491.8 7657.3 7395.6 8328.2 5634.5 6303.3 5197.4 8394.5 7867.4 14810 1 1 1 1 1 1 1 1 1 1 3823 1974 3375 3583 4246 4246 3590 RPASPSSPEHLPATPAESPAQR 22 2 Phospho (STY) _RPAS(ph)PS(ph)SPEHLPATPAESPAQR_ RPAS(0.975)PS(0.594)S(0.398)PEHLPAT(0.034)PAESPAQR RPAS(13.76)PS(1.82)S(-1.82)PEHLPAT(-12.45)PAES(-43.59)PAQR 0 0 2 1 Q9H7L9 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 891.754028320313 3 815.031616 2442.07302 32518.1531046793 1.5538 0.0012664 93724 76.388 93725 76.389 891.75341419854 43.965 1.1301 43.965 43.522 44.652 7.1054E-15 112 38 5 0.967579794679238 0.0017037546333882 0.00792036195145582 0.00050603 1 10032 100.06 79.799 10 41494000 7058.7 7614.2 10132 7263.8 8719.7 9585.5 10847 9895.8 7645.8 4447.9 6690.8 7190.9 10012 7516.9 8959.2 9516.7 10851 10048 7679.8 4417.2 1 1 1 1 1 1 1 1 1 1 3824 1951 3376 3584 4247 4247 3545;3546 RPASVSSSAAVEHEQR 16 Phospho (STY) _RPAS(ph)VSSSAAVEHEQR_ RPAS(0.837)VS(0.163)SSAAVEHEQR RPAS(7.11)VS(-7.11)S(-42.41)S(-68.3)AAVEHEQR 0 0 1 1 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.999877929688 3 597.61089 1789.81084 39161.8619998388 1.7223 0.0010293 127820 76.388 127820 76.389 673.998702477752 28.911 0.4108 28.911 28.695 29.106 0 48 13 5 0.72869242279135 0.012479004124127 0.168378953900466 7.179E-11 1 6444 198.6 174.32 4 77541000 38847 23797 38132 27447 33977 43306 33057 38065 25581 7980.1 36757 22501 38385 28214 34705 42649 33488 38626 25558 8395.2 1 1 1 1 1 1 1 1 1 1 3825 1350 3377 3585 4248 4248 2446 RPATADSPKPSAK 13 Phospho (STY) _RPATADS(ph)PKPSAK_ RPAT(0.006)ADS(0.975)PKPS(0.019)AK RPAT(-22.15)ADS(17.07)PKPS(-17.07)AK 0 0 1 2 Q03111 Q03111 Q03111 MLLT1 Protein ENL MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 524.049255371094 4 352.176337 1404.67624 42193.1144148777 1.1083 0.00039031 488030 171.87 488030 171.87 524.047882921492 32.133 0.76592 32.133 31.791 32.557 0 82 25 5 0.754162486212932 0.00474784583454498 0.141527655407651 0.021506 1 7174 58.275 40.466 3 31235000 17422 17315 20591 18100 14365 19631 16145 18409 18248 0 16498 16361 20479 18561 14973 19594 16406 18513 17916 0 1 1 1 1 1 1 1 1 1 0 3826 856 3378 3586 4249 4249 1382 RPDDVPLSLSPSK 13 Phospho (STY) _RPDDVPLSLS(ph)PSK_ RPDDVPLS(0.001)LS(0.983)PS(0.016)K RPDDVPLS(-31.29)LS(17.89)PS(-17.89)K 0 0 1 1 Q9UFC0 Q9UFC0 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.356689453125 3 497.579868 1489.71777 39319.0442769418 2.1117 0.0010507 307040 152.78 307040 152.78 650.689845493188 66.415 0.46444 66.415 66.171 66.635 0 46 15 4 0.782072074051423 0.00232331980307132 0.0417403943173117 4.9387E-05 1 15582 129.46 103.52 3 17437000 6620.9 10233 6723.8 8098.5 5888.5 7384.1 5839.2 7076.9 8331 4184.5 6265.5 9654.6 6754.3 8434.1 6026.7 7437.4 6014.4 7236.7 8114.5 4104 1 1 1 1 1 1 1 1 1 1 3827 2137 3379 3587 4250 4250 3846 RPDDVPLSLSPSKR 14 Phospho (STY) _RPDDVPLSLS(ph)PSKR_ RPDDVPLS(0.001)LS(0.994)PS(0.005)KR RPDDVPLS(-32.13)LS(22.74)PS(-22.74)KR 0 0 1 2 Q9UFC0 Q9UFC0 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.390075683594 3 549.613571 1645.81888 37925.5799755922 1.4925 0.00082029 277970 152.78 277970 152.78 702.723415754333 58.048 0.58443 58.048 57.82 58.404 0 88 19 6 0.979054594547298 0.00314415129057093 0.0187580503855126 2.8175E-07 1 13560 168.62 131.45 3 108140000 13023 19600 11771 17562 8681.2 12636 9297 13036 17931 6079.4 12318 18504 11888 18078 9009 12902 9670.4 13244 17326 6026.2 1 1 1 1 1 1 1 1 1 1 3828 2137 3380 3588 4251 4251 3846 RPDHSGGSPSPPTSEPAR 18 Phospho (STY) _RPDHSGGS(ph)PSPPTSEPAR_ RPDHS(0.011)GGS(0.987)PS(0.002)PPTSEPAR RPDHS(-19.45)GGS(19.45)PS(-27.36)PPT(-76.24)S(-80.48)EPAR 0 0 1 1 Q8TAD8 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.671691894531 3 637.949682 1910.82722 37233.1032874453 1.6292 0.0010393 119740 76.388 119740 76.389 714.671892075726 25.201 0.99023 25.201 24.54 25.53 0 83 33 3 0.944162990503615 0.00317330928064456 0.027095971162768 3.3425E-05 1 5585 123.29 105.15 5 15865000 1041.1 2445.8 2038.5 1741.7 1432.2 2618.7 2256.7 1688.7 1900 1666.3 988.93 2306.4 1989.5 1845.4 1500.5 2577.1 2247.8 1780.2 1889.8 1608.1 1 1 1 1 1 1 1 1 1 1 3829 1531 3381 3589 4252 4252 2813;2814 RPDHSGGSPSPPTSEPAR 18 2 Phospho (STY) _RPDHSGGS(ph)PS(ph)PPTSEPAR_ RPDHS(0.012)GGS(0.986)PS(0.96)PPT(0.033)S(0.008)EPAR RPDHS(-19.2)GGS(19.2)PS(14.8)PPT(-14.8)S(-20.9)EPAR 0 0 2 1 Q8TAD8 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.328430175781 3 664.605126 1990.79355 36264.180530547 1.6477 0.0010951 114940 76.388 114940 76.389 741.327310762892 26.605 1.4508 26.605 25.731 27.182 0 94 49 3 0.862967919442826 0.00201514756704839 0.0322210923041739 0.0079197 1 5837 77.576 58.023 10 10735000 1937.9 2334.2 2072.5 1881.2 1462 1612.6 2755.5 2901.2 2462.9 1926.5 1834.3 2202.4 2074.1 1954.8 1537.7 1648.1 2734.8 2918.2 2442.6 1881.2 1 1 1 1 1 1 1 1 1 1 3830 1531 3381 3590 4253 4253 2813;2814 RPEGPGAQAPSSPR 14 Phospho (STY) _RPEGPGAQAPSS(ph)PR_ RPEGPGAQAPS(0.191)S(0.809)PR RPEGPGAQAPS(-6.27)S(6.27)PR 0 0 1 1 P40222 P40222 P40222 TXLNA Alpha-taxilin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.953491210938 3 496.231461 1485.67256 41345.2567033629 1.0675 0.00052974 153940 76.387 153940 76.388 572.619201184602 26.876 0.67183 26.876 26.679 27.35 0 79 22 4 0.99181821656878 0.0221141444166943 0.119002796873897 7.8999E-05 1 5967 125.23 92.001 2 688790000 8392.2 9351.2 8615.5 9066.1 7089.3 7481.7 7005.5 8568.4 9532.4 2134.6 7942 8832.1 8643.6 9300.7 7285.5 7587.6 7204.2 8616.9 9298.5 2208.3 1 1 1 1 1 1 1 1 1 1 3831 570 3382 3591 4254 4254 919 RPESPSEISPIK 12 Phospho (STY) _RPES(ph)PSEISPIK_ RPES(0.752)PS(0.248)EISPIK RPES(4.82)PS(-4.82)EIS(-82.61)PIK 0 0 1 1 Q7Z5K2 Q7Z5K2 Q7Z5K2 WAPAL Wings apart-like protein homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.676879882813 3 473.90083 1418.68066 39268.0571078228 1.8315 0.00086795 322380 152.77 322380 152.78 626.675882595277 56.613 0.7356 56.613 56.308 57.044 0 83 24 6 0.726300890930339 0.00300168558992395 0.0696554158822568 2.8219E-05 1 13191 132.79 107.67 3 36644000 10929 9589.7 11205 12241 13038 11670 12158 11933 11942 9243.8 10343 9074.2 11287 12398 13110 11744 12412 12238 11792 8980.3 1 1 1 1 1 1 1 1 1 1 3832 1349 3383 3592 4255 4255 2437;2438 RPESPSEISPIKGSVR 16 2 Phospho (STY) _RPES(ph)PS(ph)EISPIKGSVR_ RPES(1)PS(0.867)EIS(0.133)PIKGS(0.001)VR RPES(36.71)PS(8.15)EIS(-8.15)PIKGS(-31.44)VR 0 0 2 2 Q7Z5K2 Q7Z5K2 Q7Z5K2 WAPAL Wings apart-like protein homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.408386230469 3 633.630612 1897.87001 35924.0045673382 1.9359 0.0012266 241110 152.78 241110 152.78 786.740219200023 53.477 1.2376 53.477 53.177 54.415 0 145 41 4 0.839785391938055 0.003574672868846 0.0342633468596698 8.8628E-05 1 12450 118.05 94.37 6 50694000 38154 24239 32262 22648 23047 34659 24712 27847 23885 65323 36081 22888 32715 23545 23955 34242 25052 30165 23602 62154 1 1 1 1 1 1 1 1 1 1 3833 1349 3384 3593 4256 4256 2437;2438 RPGFSPTSHR 10 Phospho (STY) _RPGFS(ph)PTSHR_ RPGFS(0.984)PT(0.012)S(0.004)HR RPGFS(19.06)PT(-19.06)S(-24.18)HR 0 0 1 1 Q8WUA4 Q8WUA4 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 484.244110107422 3 407.855666 1220.54517 46108.9711962119 0.95894 0.00039111 187290 76.387 187290 76.388 484.243141283274 29.71 0.58669 29.71 29.429 30.016 -3.5527E-15 47 19 3 0.960330985147392 0.00208993372255004 0.022034650394416 0.00016783 1 6632 118.73 88.399 3 16491000 8203.9 10016 8186.4 10788 9692.8 9798.8 9761.8 9820.7 9089.2 2813 7762.9 9466.4 8262.8 11013 9747.7 9871.6 9915 9934.7 8996.8 2876 1 1 1 1 1 1 1 1 1 1 3834 1562 3385 3594 4257 4257 2873 RPGRSPK 7 Phospho (STY) _RPGRS(ph)PK_ RPGRS(1)PK RPGRS(72.04)PK 0 0 1 2 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 445.927154541016 3 293.151643 876.4331 47069.3253434776 1.5543 0.00045564 521150 152.78 521150 152.78 445.926841077789 22.906 1.5346 22.906 22.66 24.195 0 143 52 6 0.980543982263361 0.0622636226595121 0.824461215496076 0.018711 1 5136 72.042 30.615 1 144180000 49247 69479 47642 67819 67731 44716 71779 65147 70272 25834 46594 65625 48319 69365 67603 46157 72829 65334 69402 25833 1 1 1 1 1 1 1 1 1 1 3835 963 3386 3595 4258 4258 1625 RPHSPEK 7 Phospho (STY) _RPHS(ph)PEK_ RPHS(1)PEK RPHS(136.96)PEK 0 0 1 1 Q53F19 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 463.586944580078 3 310.811287 929.41203 44793.6106192026 0.62995 0.00019579 491540 152.78 491540 152.78 463.586604761873 23.823 0.60903 23.823 23.556 24.165 0 75 20 5 0.983842834717961 0.0514207229913738 0.522871013315493 0.00011313 1 5321 136.96 68.588 1 144240000 39146 36545 39148 35781 24742 39972 25253 35159 38530 2757.5 37043 34519 39244 36853 25978 39823 26044 35537 37454 3410.2 1 1 1 1 1 1 1 1 1 1 3836 1148 3387 3596 4259 4259 1997 RPHTPTPGIYMGR 13 Phospho (STY) _RPHT(ph)PTPGIYMGR_ RPHT(1)PTPGIYMGR RPHT(37.24)PT(-37.24)PGIY(-149.32)MGR 0 0 1 1 P62995 P62995 P62995 TRA2B Transformer-2 protein homolog beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.969970703125 3 521.581437 1561.72248 39910.2712370927 1.2137 0.00063305 146450 76.388 146460 76.388 597.969590196529 44.352 1.1601 44.352 43.903 45.063 -7.1054E-15 167 39 6 0.994905944814001 0.0108017921018192 0.212388889899221 2.485E-15 2 10131 216.34 188.5 3 894890000 21604 25749 21493 27244 22070 21861 25146 26828 26054 3960.5 20443 24333 21661 27795 22407 22223 25474 26837 25669 4350.2 2 2 2 2 2 2 2 2 2 2 3837 776 3388 3597 4260;4261 4260 4497 RPHTPTPGIYMGRPTYGSSR 20 Oxidation (M),Phospho (STY) _RPHT(ph)PTPGIYM(ox)GRPTYGSSR_ RPHTPTPGIYM(1)GRPTYGSSR RPHT(0.988)PT(0.012)PGIYMGRPTYGSSR RPHTPTPGIYM(70.11)GRPTYGSSR RPHT(19.31)PT(-19.31)PGIY(-62.42)MGRPT(-62.21)Y(-68.51)GS(-64.9)S(-64.9)R 0 1 1 2 P62995 P62995 P62995 TRA2B Transformer-2 protein homolog beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.066284179688 4 582.524226 2326.0678 38831.7676457249 2.0197 0.0011765 98348 57.29 98350 57.291 640.065201802692 38.37 0.78213 38.37 38.093 38.875 -7.1054E-15 113 26 6 0.629756081370265 0.00792147182023614 0.0999019788543964 0.015884 1 8674 70.112 44.905 7 157140000 34075 28177 32200 20465 36860 38028 40925 36442 23550 4108.3 32237 26574 32596 21766 37171 37321 40988 36739 23974 4711.8 1 1 1 1 1 1 1 1 1 1 3838 776 3389 3598 4262 4262 104 4497 RPHTPTPGIYMGRPTYGSSR 20 Phospho (STY) _RPHT(ph)PTPGIYMGRPTYGSSR_ RPHT(0.991)PT(0.009)PGIYMGRPTYGSSR RPHT(20.51)PT(-20.51)PGIY(-71.98)MGRPT(-70.69)Y(-80.21)GS(-75.28)S(-74.7)R 0 0 1 2 P62995 P62995 P62995 TRA2B Transformer-2 protein homolog beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.068115234375 4 578.525498 2310.07288 39183.7622356784 1.8999 0.0010991 99029 57.291 99031 57.292 636.067105780442 46.271 0.7264 46.271 45.848 46.574 0 107 24 7 0.775837762238159 0.00707800610563023 0.114196615170937 0.0066568 1 10628 87.485 70.606 7 202410000 13324 16822 10626 12437 12766 10814 14667 14429 11532 6098.4 12598 15866 10885 13012 12853 10968 14753 14517 11512 6076.3 1 1 1 1 1 1 1 1 1 1 3839 776 3389 3599 4263 4263 4497 RPILQLSPPGPR 12 Phospho (STY) _RPILQLS(ph)PPGPR_ RPILQLS(1)PPGPR RPILQLS(153.48)PPGPR 0 0 1 1 Q8N3X1 Q8N3X1 Q8N3X1 FNBP4 Formin-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.313354492188 3 470.925421 1409.75443 42654.0941421115 1.3465 0.00063409 162210 76.387 162210 76.388 547.312829532202 68.709 2.0793 68.709 67.559 69.638 0 246 70 5 0.977786623703373 0.00432812764378836 0.0492883660888737 2.8125E-07 2 16166 153.48 103.27 1 62629000 10305 19144 11787 17027 13721 11058 17242 15907 18454 2589.5 9757.2 18073 11814 17516 13860 11416 17415 15846 18157 2806.5 2 2 2 2 2 2 2 2 2 2 3840 1464 3390 3600 4264;4265 4265 2711 RPLPVESPDTQR 12 Phospho (STY) _RPLPVES(ph)PDTQR_ RPLPVES(0.755)PDT(0.245)QR RPLPVES(4.9)PDT(-4.9)QR 0 0 1 1 P57682 P57682 P57682 KLF3 Krueppel-like factor 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 568.626403808594 3 492.239846 1473.69771 40817.4868139332 1.6997 0.00083667 155180 76.387 155180 76.388 568.625584878906 42.264 0.99922 42.264 41.826 42.825 0 79 34 3 0.955663329850727 0.00321946736355895 0.0639577260481297 0.0085389 1 9658 79.326 55.484 2 19553000 9626.5 12379 11497 17113 15458 11601 14485 10998 14090 2826.8 9116.2 11721 11516 17194 15438 11872 14781 11141 13920 2916.3 1 1 1 1 1 1 1 1 1 1 3841 734 3391 3601 4266 4266 1218 RPMDSLDSRLSPPAGLFTSAR 21 Oxidation (M),Phospho (STY) _RPM(ox)DSLDS(ph)RLSPPAGLFTSAR_ RPM(1)DSLDSRLSPPAGLFTSAR RPMDS(0.017)LDS(0.625)RLS(0.357)PPAGLFTSAR RPM(81.35)DSLDSRLSPPAGLFTSAR RPMDS(-15.55)LDS(2.43)RLS(-2.43)PPAGLFT(-49.98)S(-49.45)AR 0 1 1 2 P42229 P42229 P42229 STAT5A Signal transducer and activator of transcription 5A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.829284667969 4 593.28725 2369.11989 38749.8360783801 1.8457 0.001095 96564 57.29 96566 57.291 650.828430296954 75.255 1.3571 75.255 74.358 75.715 0 141 46 4 0.964442139248449 0.00186571387288575 0.010598144257034 0.0068656 1 17594 81.346 60.146 5 15576000 3057.6 3173.1 2932.6 3467.3 3185.5 3226.1 2959.1 3379.9 3122 3404.1 2892.8 2999.2 2962.8 3538.3 3214.7 3252.8 3027.5 3486.9 3073.6 3283.6 1 1 1 1 1 1 1 1 1 1 3842 583 3392 3602 4267 4267 76 945 RPMDSLDSRLSPPAGLFTSAR 21 Phospho (STY) _RPMDSLDS(ph)RLSPPAGLFTSAR_ RPMDS(0.04)LDS(0.421)RLS(0.401)PPAGLFT(0.064)S(0.074)AR RPMDS(-10.17)LDS(0.21)RLS(-0.21)PPAGLFT(-8.2)S(-7.53)AR 0 0 1 2 P42229 P42229 P42229 STAT5A Signal transducer and activator of transcription 5A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.830261230469 4 589.288521 2353.12498 39102.3041443214 1.8974 0.0011181 97220 57.291 97222 57.292 646.829857780862 82.068 1.4668 82.068 81.105 82.572 0 167 50 5 0.727789760101796 0.0010532043290809 0.0143953789431648 0.032604 1 19112 52.463 37.363 5 23324000 1991.3 2994.3 2985.4 3536 2860.2 2621.5 3064.1 2705.5 3822.4 3567.6 1888 2831.7 2947.9 3582.9 2913.5 2676.3 3129.9 2818 3739.4 3422 1 1 1 1 1 1 1 1 1 1 3843 583 3392 3603 4268 4268 945 RPMEEDGEEKSPSK 14 Oxidation (M),Phospho (STY) _RPM(ox)EEDGEEKS(ph)PSK_ RPM(1)EEDGEEKSPSK RPMEEDGEEKS(0.998)PS(0.002)K RPM(70.09)EEDGEEKSPSK RPMEEDGEEKS(26.93)PS(-26.93)K 0 1 1 2 Q12906 Q12906 Q12906 ILF3 Interleukin enhancer-binding factor 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.73681640625 3 572.237841 1713.6917 34601.2538639579 2.6324 0.0015064 400470 229.16 400470 229.16 801.735187355764 31.054 0.68361 31.054 30.819 31.502 0 65 22 4 0.944836640892296 0.00532024872713118 0.0984759889889781 0.0098687 1 6947 70.094 45.2 2 27636000 26469 18666 27304 17277 19874 28025 22879 22598 23103 3702.1 25050 17625 27360 17997 20650 27550 23151 22990 22786 4009 1 1 1 1 1 1 1 1 1 1 3844 912 3393 3604 4269 4269 122 1506 RPMEEDGEEKSPSK 14 Phospho (STY) _RPMEEDGEEKS(ph)PSK_ RPMEEDGEEKS(0.976)PS(0.024)K RPMEEDGEEKS(16.07)PS(-16.07)K 0 0 1 2 Q12906 Q12906 Q12906 ILF3 Interleukin enhancer-binding factor 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.404113769531 3 566.906203 1697.69678 34687.1347953874 1.3645 0.00077357 404240 229.16 404240 229.16 796.404119582411 36.945 0.70479 36.945 36.691 37.396 0 86 26 6 0.988256848805776 0.00356541929842918 0.0151411365432378 1.3404E-06 1 8318 140.8 113.84 2 79868000 29310 20911 31835 21798 24144 28558 25963 27253 23627 5841.1 27744 19759 31820 22436 24979 28318 26277 27564 23412 6130.9 1 1 1 1 1 1 1 1 1 1 3845 912 3393 3605 4270 4270 1506 RPMSSPEMK 9 Phospho (STY) _RPMS(ph)SPEMK_ RPMS(0.5)S(0.5)PEMK RPMS(0)S(0)PEMK 0 0 1 1 P51610 P51610 P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.904174804688 2 571.740334 1141.46612 34916.5644408948 2.2592 0.0012917 400820 229.16 400820 229.16 800.903865888347 42.583 0.34155 42.583 42.425 42.766 0 28 11 3 0.954714056988368 0.000675699802585707 0.00899513532346485 0.0075528 1 9743 89.189 57.758 2 10684000 17338 20415 16360 19930 15297 16900 17364 17707 19838 7641.3 16403 19283 16521 20444 15618 17099 17644 17960 19469 7605 1 1 1 1 1 1 1 1 1 1 3846 681 3394 3606 4271 4271 1142;1143 RPNTSPDR 8 Phospho (STY) _RPNT(ph)SPDR_ RPNT(0.5)S(0.5)PDR RPNT(0)S(0)PDR 0 0 1 1 Q86VM9 Q86VM9 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.305603027344 2 511.724388 1021.43422 39736.2053061904 2.0667 0.0010576 223910 114.58 223910 114.58 626.305822484204 21.696 0.60075 21.696 21.51 22.111 -3.5527E-15 52 20 5 0.992961275870273 0.0174615152392934 0.586691067204496 0.0019187 1 4885 113.1 65.227 2 28054000 2390.9 4382.6 2411 5142.1 3903.9 2325 3722.7 4157.3 5025.4 985.01 2262.5 4144.4 2444.5 5188.1 3872.2 2481 3833.7 4128.7 4903.3 1023.7 1 1 1 1 1 1 1 1 1 1 3847 1380 3395 3607 4272 4272 2501;4645 RPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR 45 Phospho (STY) _RPPGGTS(ph)PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR_ RPPGGT(0.252)S(0.748)PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR RPPGGT(-4.72)S(4.72)PPNGGLPGPLAT(-41.2)S(-41.2)AAPPGPPAAAS(-106.06)PCLGPVAAAGS(-130.09)GLR 0 0 1 1 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1084.80981445313 4 1026.76758 4103.0412 30168.6993439182 1.2037 0.0012359 55797 57.291 55798 57.292 1084.55992452518 85.706 0.77014 85.706 85.273 86.043 0 148 26 7 0.988999364234368 0.00682573135435827 0.0487674919896762 1.8855E-06 1 19971 131.14 108.58 6 111720000 1954.5 1824 1799.6 2865.5 2196.6 2373.5 1962 2662.2 2392.5 22034 1848.8 1729 1825.4 2870.8 2202.8 2446.1 2020.2 3323.1 2342.4 20809 1 1 1 1 1 1 1 1 1 1 3848 1576 3396 3608 4273 4273 2898;4705 RPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR 45 Phospho (STY) _RPPGGT(ph)SPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR_ RPPGGT(0.499)S(0.499)PPNGGLPGPLAT(0.002)SAAPPGPPAAASPCLGPVAAAGSGLR RPPGGT(0)S(0)PPNGGLPGPLAT(-24.69)S(-31.09)AAPPGPPAAAS(-64.27)PCLGPVAAAGS(-82.15)GLR 0 0 1 1 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.375549316406 6 684.847476 4103.0412 36824.5285369514 1.4209 0.00097307 55770 38.194 55772 38.195 723.376216709115 85.695 0.71301 85.695 85.301 86.014 -1.4211E-14 110 24 7 0.659214592063352 0.000809270567459348 0.0172159284896715 0.0020879 1 20057 83.014 70.953 6 27295000 3644.1 3232.2 3383.9 2779 3204.5 2937.9 3335.9 3372.7 3243.6 7765.3 3447.3 3050.7 3420.4 2883.6 3264.3 2957.8 3386.8 3600.2 3204.4 7390 1 1 1 1 1 1 1 1 1 1 3849 1576 3396 3608 4274 4274 2898;4705 RPPKSPEEEGQMSS 14 2 Phospho (STY) _RPPKS(ph)PEEEGQMSS(ph)_ RPPKS(1)PEEEGQMS(0.003)S(0.997) RPPKS(54.6)PEEEGQMS(-25)S(25) 0 0 2 2 Q9BRL6 Q9BRL6 Q9BRL6 SRSF8 Serine/arginine-rich splicing factor 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.666931152344 3 573.554604 1717.64198 37088.0989515258 1.8458 0.0010587 266370 152.78 266370 152.78 726.664770679859 37.549 0.71435 37.549 37.44 38.154 0 39 24 2 0.787218458012814 0.000469935713032221 0.00816175060487525 0.004418 1 8548 91.64 82.224 3 14298000 8712.7 13178 8775.2 12606 14835 8637.2 14371 12653 15301 3574.1 8244.7 12445 8905.8 12915 14691 8891.8 14677 12644 15058 3658.3 1 1 1 1 1 1 1 1 1 1 3850 1811 3397 3609 4275 4275 3325;3326 RPPSPDVIVLSDNEQPSSPR 20 Phospho (STY) _RPPS(ph)PDVIVLSDNEQPSSPR_ RPPS(1)PDVIVLSDNEQPSSPR RPPS(42.37)PDVIVLS(-42.37)DNEQPS(-78.29)S(-76.75)PR 0 0 1 1 Q86YP4 Q86YP4 Q86YP4 GATAD2A Transcriptional repressor p66-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.752807617188 3 757.365273 2269.07399 33646.4810196256 1.659 0.0012565 100860 76.386 100860 76.388 834.086914383735 65.106 0.74946 65.106 64.765 65.515 0 79 25 4 0.888689917095526 0.00184586547611917 0.0268060719723614 1.7271E-07 1 15278 141.78 120.18 4 16396000 7683.5 8091.4 8258.2 8625.3 12100 7801.5 11315 10031 8803.3 14636 7272.7 7646.7 8328 8810.3 12038 7912.1 11487 10416 8792.7 14013 1 1 1 1 1 1 1 1 1 1 3851 1402 3398 3610 4276 4276 2544 RPPSPEPSTK 10 Phospho (STY) _RPPS(ph)PEPSTK_ RPPS(0.986)PEPS(0.011)T(0.003)K RPPS(19.55)PEPS(-19.55)T(-25.05)K 0 0 1 1 Q01082 Q01082 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 545.294799804688 3 392.520061 1174.53835 42010.9988238667 1.4459 0.00056755 389220 152.78 389220 152.78 545.29547166575 33.705 1.166 33.705 32.939 34.105 -7.1054E-15 107 40 5 0.75711692485013 0.000675445104580671 0.00507008727079249 0.022157 1 7440 58.32 42.429 3 131400000 10843 9272.2 10990 9778.9 9798.8 11311 9583 8913.3 9646.9 2637.5 10261 8762.1 11043 10034 10011 11244 9766.8 9113.1 9515.9 2689.8 1 1 1 1 1 1 1 1 1 1 3852 830 3399 3611 4277 4277 1333 RPPTPCSDPER 11 2 Phospho (STY) _RPPT(ph)PCS(ph)DPER_ RPPT(1)PCS(1)DPER RPPT(55.1)PCS(55.1)DPER 0 0 2 1 Q9BW71 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 567.574523925781 3 491.186075 1470.53639 41935.5432883661 1.7698 0.00086932 155510 76.387 155520 76.387 567.572777779158 30.877 1.3857 30.877 30.405 31.791 0 106 46 3 0.816491610170272 0.000714929822506157 0.0160469558519339 0.028937 1 6917 55.097 49.627 1 6451200 6153.2 6626.2 7234.8 7316.2 8856.9 6871.3 7590.5 7165.3 6860.9 2154.3 5826.6 6263.5 7240.3 7462.8 8873.7 6915 7767.3 7240.8 6800.6 2194.3 1 1 1 1 1 1 1 1 1 1 3853 1849 3400 3612 4278 4278 3381;4757 RPQFSPTGDCQAEAAAAANGTGGEEDDGPAAELLEK 36 Phospho (STY) _RPQFS(ph)PTGDCQAEAAAAANGTGGEEDDGPAAELLEK_ RPQFS(0.776)PT(0.223)GDCQAEAAAAANGTGGEEDDGPAAELLEK RPQFS(5.41)PT(-5.41)GDCQAEAAAAANGT(-68.03)GGEEDDGPAAELLEK 0 0 1 1 Q7Z4Q2 Q7Z4Q2 Q7Z4Q2 HEATR3 HEAT repeat-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1043.73571777344 4 928.403262 3709.58394 31913.496103867 1.4924 0.0013855 123420 114.58 123420 114.58 1043.48480775085 82.223 0.54495 82.223 81.913 82.458 -1.4211E-14 26 18 3 0.905951344671687 0.00073672403492041 0.0206517029043519 1.374E-05 1 19225 114.64 103.32 3 10354000 1354.8 1990.3 1346.6 1576.4 2049.4 1552.5 1771.5 2204.3 1549.3 26774 1282 1877.8 1364.5 1643.4 2034.1 1615.8 1810.5 2992.5 1538.1 25262 1 1 1 1 1 1 1 1 1 1 3854 1341 3401 3613 4279 4279 2420 RPQSPGASPSQAER 14 2 Phospho (STY) _RPQS(ph)PGASPS(ph)QAER_ RPQS(1)PGAS(0.498)PS(0.502)QAER RPQS(46.91)PGAS(-0.03)PS(0.03)QAER 0 0 2 1 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.613342285156 3 543.225698 1626.65526 40798.1452291215 1.3194 0.00071675 140620 76.388 140620 76.389 619.613393483015 26.127 1.0401 26.127 25.815 26.856 0 73 35 4 0.985874583503224 0.00188277817687721 0.0120560839552553 0.0041412 1 5808 88.983 67.11 3 11917000 3483.8 3825.4 2924 3575.4 3461 3295.3 3884.8 3459.2 4174.6 2183.2 3294.4 3612.3 2983.9 3681.9 3486.8 3321.7 3941.9 3529.2 4106.8 2135.8 1 1 1 1 1 1 1 1 1 1 3855 1756 3402 3614 4280 4280 3236;3237 RPRSPGSNSK 10 Phospho (STY) _RPRS(ph)PGSNSK_ RPRS(1)PGSNSK RPRS(37.34)PGS(-37.34)NS(-63.23)K 0 0 1 2 P78347 P78347 P78347 GTF2I General transcription factor II-I MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 541.963623046875 3 389.187305 1164.54008 42523.6134391895 1.8087 0.00070391 392550 152.78 392550 152.78 541.962645231484 22.732 0.49076 22.732 22.574 23.065 0 52 16 5 0.959424051420326 0.0172890712606238 0.0738435908564188 0.00023533 1 5101 118.52 95.881 3 56061000 12701 13515 14282 13275 22324 13512 21171 17277 13879 1714.3 12024 12765 14386 13649 22156 13584 21406 17236 14004 2014.1 1 1 1 1 1 1 1 1 1 1 3856 798 3403 3615 4281 4281 1275 RPSDSSRPK 9 Phospho (STY) _RPS(ph)DSSRPK_ RPS(0.955)DS(0.022)S(0.022)RPK RPS(16.31)DS(-16.31)S(-16.31)RPK 0 0 1 2 Q13573 Q13573 Q13573 SNW1 SNW domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.28369140625 3 370.508155 1108.50264 41946.9776963867 1.3247 0.00049083 412340 152.78 412340 152.78 523.283705557684 23.912 0.40733 23.912 23.787 24.195 0 25 13 3 0.905534238496187 0.00181914940150241 0.0409543117117016 0.034433 1 5360 56.225 34.027 3 3115100 2866.8 3487.4 3064.8 3341.5 3188.4 2841.6 2878.3 3412.2 3306.3 2722.7 2713.5 3293.6 3075.7 3431.9 3224.3 2882.9 2956.4 3482.6 3244.2 2642.7 1 1 1 1 1 1 1 1 1 1 3857 967 3404 3616 4282 4282 1640 RPSFSSTPVISPAPNSTPANSNTNSNSSLITSQDAVER 38 Phospho (STY) _RPS(ph)FSSTPVISPAPNSTPANSNTNSNSSLITSQDAVER_ RPS(0.976)FS(0.021)S(0.002)T(0.002)PVISPAPNSTPANSNTNSNSSLITSQDAVER RPS(16.75)FS(-16.75)S(-27.77)T(-27.77)PVIS(-48.04)PAPNS(-85.81)T(-95.81)PANS(-120.54)NT(-139.74)NS(-166.21)NS(-165.07)S(-164.85)LIT(-187.08)S(-192.99)QDAVER 0 0 1 1 A3KN83 A3KN83 A3KN83 SBNO1 Protein strawberry notch homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1061.01879882813 4 1003.47364 4009.86546 30128.8557088695 1.5506 0.001556 57092 57.291 57094 57.292 1061.26545903344 70.286 0.51975 70.286 69.988 70.507 0 84 17 7 0.973175819603852 0.00439984734356151 0.0776763387180503 2.6817E-18 1 16460 216.01 200.76 14 44323000 2377.8 1286.1 2066.7 1943.8 1972.2 2227.2 2506.3 2750.5 1810.6 13992 2248.8 1218.7 2098.8 1960.2 2013.9 2252.7 2506.5 3160.2 1816 13239 1 1 1 1 1 1 1 1 1 1 3858 6 3405 3617 4283 4283 15 RPSLDSMENQVSVDAFK 17 Phospho (STY) _RPS(ph)LDSMENQVSVDAFK_ RPS(0.985)LDS(0.015)MENQVSVDAFK RPS(18.25)LDS(-18.25)MENQVS(-74.26)VDAFK 0 0 1 1 P07949 P07949 P07949 RET Proto-oncogene tyrosine-protein kinase receptor Ret;Soluble RET kinase fragment;Extracellular cell-membrane anchored RET cadherin 120 kDa fragment MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.419677734375 3 668.302845 2001.88671 33607.3716508312 2.5289 0.0016901 228610 152.78 228610 152.78 821.751710081054 81.804 1.2922 81.804 81.194 82.486 -1.4211E-14 104 44 3 0.967822649431992 0.00391442935100938 0.0531097477646761 4.6459E-07 1 19158 140.59 103.43 3 21147000 19239 11506 20355 9472.9 8853.1 18620 9962 11203 11650 16904 18209 10858 20294 9997.6 9680.5 18194 10133 12035 11423 16176 1 1 1 1 1 1 1 1 1 1 3859 326 3406 3618 4284 4284 533 RPSLPCISR 9 Phospho (STY) _RPS(ph)LPCISR_ RPS(1)LPCISR RPS(65.9)LPCIS(-65.9)R 0 0 1 1 Q13370 Q13370 Q13370 PDE3B cGMP-inhibited 3,5-cyclic phosphodiesterase B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.577789306641 3 389.189769 1164.54748 45793.3811577928 0.28627 0.00011142 196270 76.388 196270 76.388 465.577419907325 53.433 0.85001 53.433 53.066 53.917 0 83 28 4 0.929689582953474 0.00107651860196223 0.0130200764583169 0.0075429 1 12421 80.853 43.24 2 26390000 11417 6523.3 11926 7464.6 7359 14273 6573.6 10637 7708 1605.3 10805 6167.7 11922 7716.3 7727.5 13960 6760.2 10859 7557.4 1757.8 1 1 1 1 1 1 1 1 1 1 3860 947 3407 3619 4285 4285 1575 RPSPAEK 7 Phospho (STY) _RPS(ph)PAEK_ RPS(1)PAEK RPS(52.17)PAEK 0 0 1 1 Q9HC35 Q9HC35 Q9HC35 EML4 Echinoderm microtubule-associated protein-like 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.86669921875 2 432.702393 863.390232 39544.012149893 2.7816 0.0012036 529610 229.16 529610 229.16 661.864981244577 28.72 0.43159 28.72 28.494 28.926 0 24 14 2 0.985279778646536 0.00071529653300111 0.0111939523986799 0.053908 1 6375 52.167 16.287 1 5362400 8657.2 10610 8311.2 10059 8270.6 9082.4 9952.9 8347.6 9676 2748.7 8190.6 10020 8391.5 10346 8419 9143.3 10043 8484.5 9559 2781.5 1 1 1 1 1 1 1 1 1 1 3861 1981 3408 3620 4286 4286 3599 RPSPQPSPR 9 Phospho (STY) _RPS(ph)PQPSPR_ RPS(0.953)PQPS(0.047)PR RPS(13.07)PQPS(-13.07)PR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.845886230469 2 551.26368 1100.51281 38584.48306938 2.0661 0.001139 207850 114.58 207860 114.58 665.84552113603 23.917 0.29142 23.917 23.758 24.05 0 15 9 2 0.588260169218918 0.000654017343368626 0.0231628527490073 0.044305 1 5374 54.471 28.353 2 3015200 2086.3 4688.4 2901.2 4531.4 2831.8 2885.3 3378.2 2939 3761.6 1851.4 1977.2 4428 2874.7 4635.9 2885.9 2969.7 3423 3001.7 3695.3 1811.4 1 1 1 1 1 1 1 1 1 1 3862 2226 3409 3621 4287 4287 4068;4069 RPSPTSGDSRPAAGR 15 Phospho (STY) _RPS(ph)PTSGDSRPAAGR_ RPS(0.924)PT(0.038)S(0.038)GDS(0.001)RPAAGR RPS(13.89)PT(-13.89)S(-13.89)GDS(-31.06)RPAAGR 0 0 1 2 Q8N1G1 Q8N1G1 Q8N1G1 REXO1 RNA exonuclease 1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 607.969421386719 3 531.249404 1590.72638 39293.2344877696 1.7545 0.00093207 143790 76.386 143790 76.387 607.635530424679 22.878 0.51832 22.878 22.718 23.236 0 41 17 4 0.990164328617671 0.0058790415995746 0.0654088881069359 0.048498 1 5134 53.278 43.357 4 9328600 1401.3 2020.3 2145.4 2280.5 2331.9 2408.9 2485.7 2473.9 2116.2 1630.8 1328.8 1910 2120.1 2327.7 2357.3 2412.7 2512.7 2528.1 2103.8 1592.9 1 1 1 1 1 1 1 1 1 1 3863 1456 3410 3622 4288 4288 2698 RPSQEQSASASSGQPQAPLNR 21 Phospho (STY) _RPS(ph)QEQSASASSGQPQAPLNR_ RPS(1)QEQSASASSGQPQAPLNR RPS(71.8)QEQS(-71.8)AS(-115.68)AS(-172.19)S(-192.49)GQPQAPLNR 0 0 1 1 Q5T1M5 Q5T1M5 Q5T1M5 FKBP15 FK506-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.740905761719 3 759.352027 2275.03425 34242.6937148138 1.4532 0.0011035 100600 76.387 100600 76.388 836.073538941999 33.396 0.79115 33.396 33.054 33.845 0 102 27 4 0.982193576490803 0.00190300648005866 0.0393982279903135 4.21E-32 1 7418 316.04 297.78 5 107620000 4604.6 2786.3 4403.9 3236.6 5308.4 4518.6 5250.2 4198.5 3885.2 2995.5 4356.4 2634.7 4457 3316.4 5331.5 4473.7 5309.7 4314 3891.5 2917.8 1 1 1 1 1 1 1 1 1 1 3864 1182 3411 3623 4289 4289 2056 RPSQNAISFFNVGHSK 16 Phospho (STY) _RPS(ph)QNAISFFNVGHSK_ RPS(1)QNAISFFNVGHSK RPS(49.24)QNAIS(-49.24)FFNVGHS(-148.01)K 0 0 1 1 Q9BXB4 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.408264160156 3 623.631625 1867.87305 35804.3784281348 2.113 0.0013178 244980 152.78 244980 152.78 776.741039466716 74.543 0.67375 74.543 74.245 74.918 1.4211E-14 80 22 5 0.983475215796437 0.0020968779162718 0.0588497561395746 1.0268E-07 2 17546 170.59 142.29 3 32875000 14982 19255 14279 19765 23824 16733 26823 23026 22611 30698 14174 18193 14541 20214 23651 17044 27044 23778 22488 29439 2 2 2 2 2 2 2 2 2 2 3865 1860 3412 3624 4290;4291 4291 3394 RPSSLQSLFGLPEAAGAR 18 Phospho (STY) _RPSS(ph)LQSLFGLPEAAGAR_ RPS(0.477)S(0.523)LQSLFGLPEAAGAR RPS(-0.41)S(0.41)LQS(-37.16)LFGLPEAAGAR 0 0 1 1 P39880 P39880 P39880 CUX1 Homeobox protein cut-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.049682617188 3 646.326202 1935.95678 37133.1258908287 2.0639 0.0013339 118190 76.388 118190 76.389 723.048884468512 92.768 0.9909 92.768 92.31 93.301 0 82 33 4 0.920536348600301 0.00321543102674057 0.0330994814228128 2.8915E-07 1 21565 139.45 108.91 3 21044000 4199.4 3150.9 4317.9 4255.2 6623.3 4022.8 5481.7 5256 4389.3 12325 3974.1 2982.8 4367.2 4298 6568 4081.3 5604.8 5595.7 4377.3 11727 1 1 1 1 1 1 1 1 1 1 3866 568 3413 3625 4292 4292 917;918 RPSSLQSLFGLPEAAGAR 18 Phospho (STY) _RPS(ph)SLQSLFGLPEAAGAR_ RPS(0.918)S(0.082)LQSLFGLPEAAGAR RPS(10.5)S(-10.5)LQS(-62.23)LFGLPEAAGAR 0 0 1 1 P39880 P39880 P39880 CUX1 Homeobox protein cut-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.715270996094 3 646.326202 1935.95678 37026.0877524167 1.9375 0.0012522 118190 76.387 118190 76.388 723.047059427003 96.105 0.64074 96.105 95.764 96.404 0 79 21 5 0.776683118807443 0.00130391982598139 0.0516195334481122 1.5754E-09 1 22321 175.83 143.92 3 16516000 3541.6 2310.6 2809.3 2545.4 3574.1 3542.7 2839.7 4321.4 3369.2 8392.1 3348.5 2184.1 2878.9 2615.3 3572 3532 2940.3 4557.3 3301.9 8002.1 1 1 1 1 1 1 1 1 1 1 3867 568 3413 3625 4293 4293 917;918 RPSSSEIITEGK 12 Phospho (STY) _RPS(ph)SSEIITEGK_ RPS(0.877)S(0.109)S(0.014)EIITEGK RPS(9.05)S(-9.05)S(-18.12)EIIT(-85.72)EGK 0 0 1 1 Q9BQF6 Q9BQF6 Q9BQF6 SENP7 Sentrin-specific protease 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.663269042969 3 461.888701 1382.64427 40825.2358760075 0.60088 0.00027754 330760 152.78 330760 152.78 614.663704702993 52.084 0.37767 52.084 51.806 52.183 0 32 12 3 0.983365052246566 0.00141883714048057 0.015021845752743 1.569E-07 1 12089 163.45 97.182 4 22579000 12059 11224 12807 12395 12802 12637 13968 12717 13107 3028.1 11414 10609 12855 12659 13007 12663 14138 12845 12970 3145.7 1 1 1 1 1 1 1 1 1 1 3868 1806 3414 3626 4294 4294 3311 RPSSTSVPLGDK 12 Phospho (STY) _RPS(ph)STSVPLGDK_ RPS(0.797)S(0.108)T(0.071)S(0.023)VPLGDK RPS(8.68)S(-8.68)T(-10.5)S(-15.32)VPLGDK 0 0 1 1 Q9NXR1 Q9NXR1 Q9NXR1 NDE1 Nuclear distribution protein nudE homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.659057617188 3 441.881658 1322.62315 42697.9970327245 1.5743 0.00069564 345740 152.78 345740 152.78 594.657949790886 49.988 0.40917 49.988 49.718 50.128 0 25 13 3 0.730141031541492 0.00146705921564979 0.0209980466455324 0.0043594 1 11601 90.334 49.392 4 17388000 22236 14434 18143 14188 17133 20215 17803 16918 16425 3226.8 21025 13634 18494 14680 17454 19958 18052 17195 16265 3430 1 1 1 1 1 1 1 1 1 1 3869 2067 3415 3627 4295 4295 3735 RPSTSQTVSTPAPVPVIESTEAIEAK 26 Phospho (STY) _RPS(ph)TSQTVSTPAPVPVIESTEAIEAK_ RPS(0.778)T(0.191)S(0.012)QT(0.017)VS(0.001)T(0.001)PAPVPVIESTEAIEAK RPS(6.09)T(-6.09)S(-18.07)QT(-16.69)VS(-28.48)T(-29.97)PAPVPVIES(-80.74)T(-89.4)EAIEAK 0 0 1 1 P12270 P12270 P12270 TPR Nucleoprotein TPR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1079.24633789063 3 925.798583 2774.37392 30463.1637461216 1.7588 0.0016283 165020 152.78 165020 152.78 1078.90824952785 83.732 0.57381 83.732 83.441 84.015 0 59 19 4 0.986479679012356 0.00239606897063392 0.0630174978124698 2.7004E-05 1 19556 130.33 107.28 8 13979000 3641 3390.5 4212.2 3567.2 3217.6 4360.2 3712.2 4851.3 3715.2 25873 3447.5 3203.9 4197.4 3664.7 3330.9 4389.9 3755 5626.8 3665.6 24475 1 1 1 1 1 1 1 1 1 1 3870 370 3416 3628 4296 4296 604 RPSVGSQSNQAGQGK 15 Phospho (STY) _RPS(ph)VGSQSNQAGQGK_ RPS(0.895)VGS(0.105)QSNQAGQGK RPS(9.32)VGS(-9.32)QS(-68.01)NQAGQGK 0 0 1 1 Q9UPP1 Q9UPP1 Q9UPP1 PHF8 Histone lysine demethylase PHF8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.688354492188 3 527.577409 1579.7104 36747.3312432247 2.2334 0.0011783 289580 152.78 289580 152.78 680.354297834711 30.103 0.3301 30.103 29.924 30.254 0 35 10 4 0.978827423639868 0.00493277792241083 0.0952298628828943 2.4882E-11 1 6705 209.23 179.1 3 41750000 18623 9463.3 20528 8229.7 17075 20724 17799 16023 8709.7 3196.5 17629 8932.6 20520 8726 17534 20162 17834 16351 8979.3 3380.7 1 1 1 1 1 1 1 1 1 1 3871 2216 3417 3629 4297 4297 4010 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK 30 Phospho (STY) _RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAK_ RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK RPT(-139.78)PNDDT(-131.93)LDEGVGLVHS(-69.31)NIAT(-44.2)EHIPS(44.2)PAK 0 0 1 1 Q01581 Q01581 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.98486328125 5 652.917486 3259.55105 35994.3534698905 1.6818 0.001098 140390 91.665 140390 91.666 744.983563911195 73.526 0.51389 73.526 73.271 73.785 0 63 17 5 0.873325271488276 0.00293753716535818 0.0374304005380627 9.3901E-08 1 17283 161.29 140.16 5 24262000 8248.5 10366 8625.1 12747 9771.6 7617.4 9383.2 9531.9 11410 10756 7806.6 9805.6 8676.6 12861 9845 7908.6 9625.5 9811.1 11172 10348 1 1 1 1 1 1 1 1 1 1 3872 840 3418 3630 4298 4298 1357 RQLSPQSK 8 Phospho (STY) _RQLS(ph)PQSK_ RQLS(1)PQSK RQLS(58.82)PQS(-58.82)K 0 0 1 1 Q86VM9 Q86VM9 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 494.613433837891 3 341.837613 1022.49101 44784.7106430688 0.98141 0.00033548 446920 152.78 446930 152.78 494.613255463763 32.577 0.70092 32.577 32.267 32.968 0 79 23 5 0.94928348498708 0.00582862578786996 0.063928452978071 2.3439E-05 1 7273 138.71 93.429 2 49665000 20729 29730 20951 29576 22127 20491 24737 27537 32325 1720 19616 28084 21103 30231 22429 21036 25262 27401 31573 2256.9 1 1 1 1 1 1 1 1 1 1 3873 1380 3419 3631 4299 4299 2500 RQSFAVLR 8 Phospho (STY) _RQS(ph)FAVLR_ RQS(1)FAVLR RQS(110.08)FAVLR 0 0 1 1 Q8TE77 Q8TE77 Q8TE77 SSH3 Protein phosphatase Slingshot homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 429.237243652344 3 352.849853 1055.52773 50292.0651096925 -0.49593 -0.00017499 216490 76.388 216490 76.388 429.237484842109 53.169 0.4201 53.169 53.027 53.447 0 27 14 3 0.727660973172532 0.000579093110926068 0.00390733730677564 0.00084313 1 12394 110.08 74.425 1 16471000 22738 6447.4 23365 7627.9 7656 26796 6642.9 14471 7158.1 886.25 21518 6097.4 23297 8068 8683 25851 6824.7 15020 7041.1 1169.4 1 1 1 1 1 1 1 1 1 1 3874 1549 3420 3632 4300 4300 2843 RQSGLYDSQNPPTVNNCAQDR 21 Phospho (STY) _RQS(ph)GLYDSQNPPTVNNCAQDR_ RQS(0.989)GLY(0.003)DS(0.009)QNPPTVNNCAQDR RQS(20.64)GLY(-25.78)DS(-20.64)QNPPT(-51.54)VNNCAQDR 0 0 1 1 Q96RU3 Q96RU3 Q96RU3 FNBP1 Formin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 910.751831054688 3 834.027214 2499.05981 32830.8166720411 1.7418 0.0014527 91589 76.388 91591 76.389 910.748926881648 42.478 0.54512 42.478 42.136 42.681 0 58 18 5 0.976945025797881 0.00204392249828808 0.0426657086348656 0.0135 1 9683 70.653 55.26 4 15786000 86188 79371 84897 78548 50462 87642 57008 69933 79946 9115.5 81551 74974 85151 80847 53356 87237 58343 71109 77910 10202 1 1 1 1 1 1 1 1 1 1 3875 1741 3421 3633 4301 4301 3195 RQSLELQK 8 Phospho (STY) _RQS(ph)LELQK_ RQS(1)LELQK RQS(72.29)LELQK 0 0 1 1 Q9UIG0 Q9UIG0 Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.437377929688 2 541.273713 1080.53287 36109.8310623411 1.4007 0.00075819 423380 229.16 423380 229.16 770.436518586557 48.518 0.37452 48.518 48.305 48.68 0 19 12 2 0.920815042504929 0.000712585251473938 0.0101868466854714 0.019686 1 11258 72.289 37.486 1 18959000 22453 26955 21874 28565 16590 22318 14684 21827 29673 9881.4 21244 25472 21991 29131 17134 22662 15449 22211 28642 9809.7 1 1 1 1 1 1 1 1 1 1 3876 2158 3422 3634 4302 4302 3888 RQSLTSPDSQSAR 13 Phospho (STY) _RQS(ph)LTSPDSQSAR_ RQS(0.999)LT(0.001)SPDSQSAR RQS(28.98)LT(-28.98)S(-54.68)PDS(-80.91)QS(-91.36)AR 0 0 1 1 Q15751 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.286743164063 3 504.898259 1511.67295 40848.1326229276 1.8428 0.00093044 151290 76.388 151290 76.388 581.285845123207 28.228 0.36969 28.228 28.035 28.405 0 30 12 3 0.635749649958395 0.00263810582538639 0.0530176675526362 0.00066074 1 6282 100.18 58.142 5 10794000 6422.7 8990.1 6970.6 7204.6 9138.5 6425.3 9003.8 8450.5 8387.8 2302 6079.6 8482.4 7013.8 7493.9 9143.2 6504.9 9154.6 8467.3 8302.3 2363.2 1 1 1 1 1 1 1 1 1 1 3877 1092 3423 3635 4303 4303 1895 RQSMTVK 7 Phospho (STY) _RQS(ph)MTVK_ RQS(1)MTVK RQS(44.56)MT(-44.56)VK 0 0 1 1 P11274 P11274 P11274 BCR Breakpoint cluster region protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 463.256164550781 3 310.48066 928.420152 45533.424668815 0.37951 0.00011783 492060 152.78 492060 152.78 463.255799952023 36.104 0.49173 36.104 35.936 36.428 0 35 16 3 0.968718089293557 0.0013310508091481 0.0119127641342239 0.0055628 1 8126 91.656 60.234 2 14601000 17982 39158 17241 39227 20778 16762 22029 26206 40529 2655.9 17013 36992 17449 39912 20912 17928 22870 26000 39206 3107.3 1 1 1 1 1 1 1 1 1 1 3878 362 3424 3636 4304 4304 588 RQSPEPSPVTLGR 13 Phospho (STY) _RQS(ph)PEPSPVTLGR_ RQS(1)PEPSPVTLGR RQS(63.9)PEPS(-63.9)PVT(-98.05)LGR 0 0 1 1 Q9NRL2 Q9NRL2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 578.304504394531 3 501.915362 1502.72426 41586.8538409763 1.485 0.00074535 152190 76.388 152190 76.389 578.302693545396 44.201 0.46427 44.201 43.934 44.398 0 37 15 3 0.838311131629663 0.00144193796836677 0.0192671493581439 5.001E-07 1 10163 151.31 123.01 3 18242000 8004.1 10737 8961.9 10802 10278 9270.7 10760 10611 11743 2107.3 7577.5 10143 8986.1 11063 10361 9381.6 10957 10655 11545 2229.9 1 1 1 1 1 1 1 1 1 1 3879 2018 3425 3637 4305 4305 3667 RQSPLPPQK 9 Phospho (STY) _RQS(ph)PLPPQK_ RQS(1)PLPPQK RQS(84.61)PLPPQK 0 0 1 1 Q01105 Q01105 Q01105 SET Protein SET MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.304382324219 3 377.528779 1129.56451 43546.0635293952 0.89921 0.00033948 404670 152.78 404670 152.78 530.304103401375 35.789 2.2962 35.789 34.945 37.241 0 210 78 3 0.982066114652116 0.00134923220922469 0.0126225412772789 0.0062493 2 8294 84.605 57.77 1 25045000 24548 14577 28304 15345 42067 27436 39085 25157 14419 5402.5 23243 13775 28447 15904 41811 26943 39253 25485 15273 5669.4 2 2 2 2 2 2 2 2 2 2 3880 831 3426 3638 4306;4307 4307 1334 RQSPSPSTRPIR 12 Phospho (STY) _RQS(ph)PSPSTRPIR_ RQS(1)PSPSTRPIR RQS(39.26)PS(-39.26)PS(-61.82)T(-68.47)RPIR 0 0 1 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 564.303588867188 3 487.915585 1460.72492 41149.7259171541 1.4622 0.00071343 156560 76.388 156560 76.388 564.303322712301 24.728 0.61072 24.728 24.453 25.064 0 90 20 6 0.966048475839362 0.0274036668627987 0.32505911509983 0.000197 1 5503 108.63 83.417 4 169580000 15774 19164 13347 19724 18164 15811 17887 18727 22189 2110.9 14917 18107 13638 20154 18149 16063 18339 18735 21712 2421.1 1 1 1 1 1 1 1 1 1 1 3881 1436 3427 3639 4308 4308 2643;2644 RQSPSPSTRPIR 12 2 Phospho (STY) _RQS(ph)PS(ph)PSTRPIR_ RQS(0.997)PS(0.686)PS(0.271)T(0.046)RPIR RQS(24.55)PS(4.05)PS(-4.05)T(-11.76)RPIR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.959045410156 3 514.571028 1540.69126 40364.2867216398 1.2442 0.00064024 148450 76.388 148450 76.388 590.958799655872 26.335 1.6494 26.335 25.731 27.38 0 215 56 6 0.995604089471748 0.0109797350150597 0.0553701866637695 0.0075915 2 5955 82.707 62.6 6 115990000 15717 16209 18261 18357 18498 14934 20720 19382 17915 7328.8 14882 15325 18249 18663 18786 15191 20907 19490 17795 7349.5 2 2 2 2 2 2 2 2 2 2 3882 1436 3427 3640 4309;4310 4310 2643;2644 RQSSGSATNVASTPDNR 17 Phospho (STY) _RQS(ph)SGSATNVASTPDNR_ RQS(0.972)S(0.028)GSATNVASTPDNR RQS(15.43)S(-15.43)GS(-38.13)AT(-85.54)NVAS(-151.57)T(-170.89)PDNR 0 0 1 1 Q7Z460 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.325500488281 3 609.937554 1826.79083 37993.4844431982 1.4919 0.00090995 125240 76.387 125240 76.388 686.324567367468 25.801 0.28267 25.801 25.675 25.958 0 35 9 4 0.995390588837449 0.0109356693116617 0.0460760367026648 4.8786E-16 1 5750 232.87 201.04 6 72035000 4949.2 5550.2 4770.2 4511 5742.5 4252.7 5887.8 5443.4 5565.6 1995.3 4682.6 5237.1 4825.8 4691.1 5771.8 4292.9 5977.5 5474.1 5505.3 2004.8 1 1 1 1 1 1 1 1 1 1 3883 1338 3428 3641 4311 4311 2415 RQSSTPSAPELGQQPDVNISEWK 23 Phospho (STY) _RQSS(ph)TPSAPELGQQPDVNISEWK_ RQS(0.155)S(0.689)T(0.155)PSAPELGQQPDVNISEWK RQS(-6.47)S(6.47)T(-6.47)PS(-32.99)APELGQQPDVNIS(-227.75)EWK 0 0 1 1 Q93100 Q93100 Q93100 PHKB Phosphorylase b kinase regulatory subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1031.52355957031 3 878.744701 2633.21227 31145.9937123236 1.2932 0.0011364 173860 152.78 173860 152.78 1031.85502751537 79.751 0.51414 79.751 79.474 79.989 -1.4211E-14 56 17 4 0.967055298485806 0.00221394891516798 0.0192123640416115 8.4275E-19 1 18664 248.92 229.37 5 19679000 4347.6 5582.8 3954.1 4910.1 6559.5 4060.4 6784.8 6891.5 5973 25279 4112.5 5270.1 4036.5 5068.9 6505.2 4191 6873.3 7564.7 5928 23963 1 1 1 1 1 1 1 1 1 1 3884 1637 3429 3642 4312 4312 3029 RQSVSPPYKEPSAYQSSTR 19 2 Phospho (STY) _RQS(ph)VS(ph)PPYKEPSAYQSSTR_ RQS(0.988)VS(0.992)PPY(0.004)KEPS(0.013)AYQS(0.001)S(0.001)TR RQS(21.19)VS(22.16)PPY(-24.38)KEPS(-21.19)AY(-34.57)QS(-33.96)S(-33.54)T(-36.34)R 0 0 2 2 Q9NYV4 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 929.784057617188 3 776.673428 2326.99846 32967.8118550299 1.3355 0.0010372 196710 152.78 196710 152.78 929.783753130276 48.406 0.99355 48.406 47.6 48.594 0 84 33 3 0.956047944382667 0.00153419226342138 0.0110650896407117 0.0086322 1 11168 82.302 70.652 28 17105000 11116 14049 12909 12245 11093 11455 12286 14529 16346 6461 10525 13261 12875 12670 11385 11568 12560 14649 15956 6420 1 1 1 1 1 1 1 1 1 1 3885 2077 3430 3643 4313 4313 3764;3765 RRASPSPPPK 10 2 Phospho (STY) _RRAS(ph)PS(ph)PPPK_ RRAS(1)PS(1)PPPK RRAS(55.2)PS(55.2)PPPK 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.967468261719 3 418.191489 1251.55264 40993.8890655806 1.5248 0.00063767 365320 152.77 365320 152.78 570.966400243544 26.665 3.3493 26.665 25.901 29.25 -3.5527E-15 332 115 5 0.501252571305717 0.00441664581037763 0.124973816393481 0.028158 1 6222 55.196 41.038 1 142370000 20872 25222 23111 24450 28392 23715 31731 23786 28064 4181.7 19758 23822 23214 25140 28545 23812 32038 23982 27846 4488.1 1 1 1 1 1 1 1 1 1 1 3886 1436 3431 3644 4314 4314 2623;2624 RRDSYYDR 8 Phospho (STY) _RRDS(ph)YYDR_ RRDS(1)YYDR RRDS(82.15)Y(-82.15)Y(-83)DR 0 0 1 2 Q13595 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 480.55908203125 3 404.171543 1209.4928 45379.5428004217 0.8994 0.00036351 189000 76.388 189000 76.388 480.559163826639 23.929 0.61096 23.929 23.7 24.311 0 53 20 4 0.893060483435059 0.00619363675776106 0.0679147749019233 0.0012916 1 5354 107.03 69.699 3 12823000 6482.8 5727.7 5624.6 5512.6 9199.3 6541.6 10619 8197.7 6553.6 12044 6131.2 5409.6 5759.4 5689.8 9140.7 6554.5 10629 8521.6 6638.8 11530 1 1 1 1 1 1 1 1 1 1 3887 970 3432 3645 4315 4315 1645 RRESASSSSSVK 12 Phospho (STY) _RRES(ph)ASSSSSVK_ RRES(0.992)AS(0.008)SSSSVK RRES(20.84)AS(-20.84)S(-42.24)S(-63.12)S(-68.73)S(-70.9)VK 0 0 1 2 Q9NPF5 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.98876953125 3 454.212067 1359.61437 40249.6108670469 1.7774 0.00080731 336350 152.78 336350 152.78 607.321225104043 23.908 0.29092 23.908 23.787 24.078 -3.5527E-15 21 9 3 0.940517849040434 0.00309871902265927 0.062775657425838 0.00022594 1 5359 104.21 68.792 6 5720800 3785.8 3902.5 4016.4 3792.7 3428.6 4737.3 4191 4072.7 4016 3219 3583.2 3686 4025.2 3916.1 3524.7 4704 4224.7 4208 3970 3125.3 1 1 1 1 1 1 1 1 1 1 3888 1996 3433 3646 4316 4316 3621 RRGNDPLTSSPGR 13 Phospho (STY) _RRGNDPLTS(ph)SPGR_ RRGNDPLT(0.124)S(0.706)S(0.171)PGR RRGNDPLT(-7.57)S(6.17)S(-6.17)PGR 0 0 1 2 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.626281738281 3 498.238727 1491.69435 40602.2843789319 1.7878 0.00089076 153310 76.387 153320 76.388 574.626106795868 27.794 0.65567 27.794 27.466 28.122 0 65 22 4 0.693713883001516 0.00337689993379184 0.0257921665049833 0.021597 1 6174 63.691 37.15 3 44568000 6354.4 5521.2 7048.7 5123.9 6826.9 7080.7 7584.9 6549.1 5808.6 2359.2 6015.5 5213.4 7056.4 5316.7 6950.1 7007.8 7635.7 6660.9 5806.7 2373 1 1 1 1 1 1 1 1 1 1 3889 647 3434 3647 4317 4317 1071;1072 RRGSQEK 7 Phospho (STY) _RRGS(ph)QEK_ RRGS(1)QEK RRGS(61.35)QEK 0 0 1 2 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 466.926574707031 3 314.150191 939.428743 45426.4011657425 0.92505 0.00029061 486310 152.78 486310 152.78 466.925868712355 20.508 1.4531 20.508 20.319 21.772 0 133 50 5 0.964787827024419 0.0167048775425758 0.184664469465607 0.028387 1 4631 61.353 22.088 1 123270000 12226 9928.8 10225 9511.3 6696.7 8661.2 7884.9 9382.2 9092.6 2760.8 11561 9377 10370 9777.7 7022.1 8733.7 8002.1 9466.3 8920.5 2816.7 1 1 1 1 1 1 1 1 1 1 3890 2072 3435 3648 4318 4318 3751 RRGSSGSVDETLFALPAASEPVIR 24 Phospho (STY) _RRGS(ph)SGSVDETLFALPAASEPVIR_ RRGS(0.591)S(0.175)GS(0.175)VDET(0.06)LFALPAASEPVIR RRGS(5.29)S(-5.29)GS(-5.29)VDET(-9.92)LFALPAAS(-126.2)EPVIR 0 0 1 2 Q9NQC3 Q9NQC3 Q9NQC3 RTN4 Reticulon-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 942.492736816406 3 865.76907 2594.28538 32982.3560621549 1.3492 0.0011681 88232 76.388 88233 76.389 942.491856216869 85.848 0.80162 85.848 85.505 86.307 0 70 27 3 0.815344571047268 0.00461843706224288 0.0407678519317216 1.0972E-07 1 20014 152.64 114.1 5 24510000 3727.3 8220.9 2806 8653.5 5096.2 3445.7 6009.6 6728.5 9414.8 35547 3523.5 7768.5 2908.2 8775 5052.5 3794.3 6166.6 7693 9145.2 33627 1 1 1 1 1 1 1 1 1 1 3891 2003 3436 3649 4319 4319 3635;3636 RRHSEVETDSK 11 Phospho (STY) _RRHS(ph)EVETDSK_ RRHS(1)EVETDSK RRHS(45.68)EVET(-45.68)DS(-105.09)K 0 0 1 2 Q9NX58 Q9NX58 Q9NX58 LYAR Cell growth-regulating nucleolar protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 471.245056152344 4 356.663594 1422.62527 45614.4098287156 0.86694 0.00030921 321260 114.58 321260 114.58 471.245349879208 22.985 0.8655 22.985 22.776 23.642 0 67 29 4 0.887783018872725 0.00226279695634209 0.0102806910082241 2.361E-07 1 5155 165.64 109.07 3 6237900 3137.4 4581.6 3622.7 4770.6 6430 3356.7 5760.7 5337 4329.9 2163.2 2970.6 4329.1 3653.1 4864.1 6348.6 3456.6 5856.8 5341.8 4333 2160.5 1 1 1 1 1 1 1 1 1 1 3892 2061 3437 3650 4320 4320 3728 RRLSPPSSSAASSYSFSDLNSTR 23 Phospho (STY) _RRLS(ph)PPSSSAASSYSFSDLNSTR_ RRLS(0.986)PPS(0.01)S(0.003)S(0.001)AASSYSFSDLNSTR RRLS(19.82)PPS(-19.82)S(-24.58)S(-31.08)AAS(-64.32)S(-77.88)Y(-128.78)S(-103.45)FS(-124.72)DLNS(-157.14)T(-160.87)R 0 0 1 2 P50402 P50402 P50402 EMD Emerin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 928.452941894531 3 851.729163 2552.16566 32223.9352237944 1.4861 0.0012658 89686 76.388 89687 76.389 928.452170007268 60.57 0.98595 60.57 60.023 61.009 7.1054E-15 77 33 4 0.970454957326584 0.00227658383683015 0.0708089065451786 4.9783E-12 1 14181 180.6 137.8 11 11212000 5768.9 9841.9 6578.6 10637 6973.9 7612.4 7760.7 8832.7 11959 10471 5461.9 9301.8 6584 10824 7068.9 7800.3 7976.9 9128 11622 10064 1 1 1 1 1 1 1 1 1 1 3893 662 3438 3651 4321 4321 1118 RRPESAPAESSPSK 14 Phospho (STY) _RRPESAPAESS(ph)PSK_ RRPESAPAES(0.062)S(0.936)PS(0.001)K RRPES(-59.49)APAES(-11.76)S(11.76)PS(-28.41)K 0 0 1 2 Q07889 Q07889 Q07889 SOS1 Son of sevenless homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.69140625 3 526.91391 1577.7199 38602.4916027261 1.7382 0.00091588 289940 152.77 289940 152.78 679.688705144778 25.977 0.34306 25.977 25.844 26.187 0 26 11 3 0.975307103422247 0.00201627141500422 0.00953116515648904 1.1536E-06 1 5794 145.71 120.51 4 11183000 3361.2 5712.3 3158.5 6336 12339 3262.9 10879 6586.2 6270.4 2017 3179.8 5399.7 3301.7 6418.1 11955 3453.2 11017 6538.4 6382.4 2051.6 1 1 1 1 1 1 1 1 1 1 3894 883 3439 3652 4322 4322 1431 RRPSPQPSPR 10 Phospho (STY) _RRPS(ph)PQPSPR_ RRPS(1)PQPSPR RRPS(62.52)PQPS(-62.52)PR 0 0 1 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 496.269073486328 3 419.878582 1256.61392 44079.3540397332 1.1598 0.00048697 181930 76.388 181930 76.388 496.266383572507 21.441 0.65855 21.441 21.143 21.801 0 75 22 5 0.80138499558066 0.00926671669429583 0.0563213019515161 0.00034466 1 4817 109 73.486 2 64976000 4779 6442.5 5350.6 6552.1 3338.4 5213.2 4065.5 5778.6 6962.3 7903.7 4524.3 6086.7 5331.6 6699.2 3519.6 5307.2 4182.7 6012.6 6746.8 7576 1 1 1 1 1 1 1 1 1 1 3895 2226 3440 3653 4323 4323 4068;4069 RRPSPQPSPR 10 2 Phospho (STY) _RRPS(ph)PQPS(ph)PR_ RRPS(1)PQPS(1)PR RRPS(71.35)PQPS(71.35)PR 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 522.922790527344 3 446.534026 1336.58025 43362.1675905862 1.378 0.00061532 171070 76.388 171070 76.388 522.921725256854 22.117 1.7552 22.117 21.714 23.469 -3.5527E-15 174 60 4 0.981221315707064 0.0136822731183258 0.350035703368895 0.011404 2 4963 71.354 35.494 1 11309000 9650.2 2721.9 8350.2 3777.2 5969 8207.3 5564 6589.2 3253.9 6516.6 9126.6 2577.3 8453 3885.1 6190.1 8020.8 5619.9 6868.5 3308.6 6288.6 2 2 2 2 2 2 2 2 2 2 3896 2226 3440 3654 4324;4325 4324 4068;4069 RRSFPDIEDEEK 12 Phospho (STY) _RRS(ph)FPDIEDEEK_ RRS(1)FPDIEDEEK RRS(133.94)FPDIEDEEK 0 0 1 2 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.015014648438 3 534.238282 1599.69302 37948.2849827891 2.2095 0.0011804 285970 152.78 285970 152.78 687.013055146568 53.799 0.64354 53.799 53.564 54.207 -7.1054E-15 61 21 4 0.839069774654128 0.00125606029127435 0.0134566927247466 3.1632E-05 1 12558 133.94 102.97 1 11065000 14559 12011 14274 11572 11367 15354 12480 12030 12018 10333 13776 11343 14356 11970 11722 15199 12638 12507 11878 10008 1 1 1 1 1 1 1 1 1 1 3897 1204 3441 3655 4326 4326 2115 RRSGPLEESER 11 Phospho (STY) _RRS(ph)GPLEESER_ RRS(1)GPLEESER RRS(37.25)GPLEES(-37.25)ER 0 0 1 2 Q9Y3X0 Q9Y3X0 Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.27197265625 3 465.884062 1394.63036 41808.4541110194 1.1379 0.00053014 163960 76.387 163960 76.387 542.271490151457 26.017 0.49445 26.017 25.929 26.423 3.5527E-15 29 16 3 0.950373908007104 0.000738401980964526 0.00728691359081097 0.024781 1 5806 61.444 23.85 2 4310600 5910.4 5424.4 4638.3 6197.7 8219 5683.9 8183.7 6161.9 4735.1 2625.3 5587.9 5128.6 4787.4 6308.1 8125.5 5731.1 8237.6 6241.4 4818.4 2614.7 1 1 1 1 1 1 1 1 1 1 3898 2271 3442 3656 4327 4327 4204 RRSIQDLTVTGTEPGQVSSR 20 Phospho (STY) _RRS(ph)IQDLTVTGTEPGQVSSR_ RRS(1)IQDLTVTGTEPGQVSSR RRS(54.74)IQDLT(-54.74)VT(-95.48)GT(-128.15)EPGQVS(-195.68)S(-201.78)R 0 0 1 2 O43318 O43318 O43318 MAP3K7 Mitogen-activated protein kinase kinase kinase 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.097290039063 3 756.376172 2266.10669 34395.9421364427 1.17 0.00088498 100990 76.387 100990 76.388 833.097840899476 48.014 0.62047 48.014 47.744 48.364 -7.1054E-15 65 20 5 0.794966622967766 0.0059204780545775 0.0229155022884706 5.4055E-16 1 11145 221.31 201.91 6 55023000 24668 29768 23490 32389 76391 24933 85821 47305 31520 49864 23338 28136 24386 32976 74481 25699 85419 48086 33403 48048 1 1 1 1 1 1 1 1 1 1 3899 106 3443 3657 4328 4328 177 RRSMNEIK 8 Phospho (STY) _RRS(ph)MNEIK_ RRS(1)MNEIK RRS(52.46)MNEIK 0 0 1 2 Q5VWQ0 Q5VWQ0 Q5VWQ0 RSBN1 Round spermatid basic protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 524.620483398438 3 371.846002 1112.51618 44283.6331312969 1.0271 0.00038191 410850 152.77 410850 152.77 524.620191436947 33.422 0.455 33.422 33.361 33.816 0 26 15 2 0.750989618457033 0.000589008360054054 0.00200769064953985 0.044379 1 7492 52.463 14.85 1 17248000 14094 14332 12495 15677 15993 13606 15312 14103 14478 2234.8 13331 13547 12715 15981 16013 13741 15596 14195 14321 2430.8 1 1 1 1 1 1 1 1 1 1 3900 1212 3444 3658 4329 4329 2130 RRSPGLCSDSLEK 13 Phospho (STY) _RRS(ph)PGLCSDSLEK_ RRS(0.995)PGLCS(0.005)DSLEK RRS(23.13)PGLCS(-23.13)DS(-52.89)LEK 0 0 1 2 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 511.767852783203 4 396.935453 1583.71271 44655.6145747058 0.85408 0.00033901 288660 114.58 288670 114.58 511.767215453355 43.143 0.38437 43.143 42.969 43.354 0 24 12 3 0.968331990979072 0.00090548890341251 0.0101187389345583 0.00096645 1 9884 99.044 30.072 3 16054000 12776 11331 11672 11342 9687.5 11923 7625.1 11294 12565 1113 12086 10704 11789 11654 9923.6 11919 7996 11387 12188 1309.4 1 1 1 1 1 1 1 1 1 1 3901 1204 3445 3659 4330 4330 2116 RRSPPADAIPK 11 Phospho (STY) _RRS(ph)PPADAIPK_ RRS(1)PPADAIPK RRS(75.88)PPADAIPK 0 0 1 2 P18754 P18754 P18754 RCC1 Regulator of chromosome condensation MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.666381835938 3 429.890488 1286.64963 41207.3028548002 1.9282 0.00082891 355380 152.78 355380 152.78 582.665956706644 38.832 1.8255 38.832 38.063 39.889 0 216 62 5 0.841817858839222 0.001527340153778 0.024871892109478 0.013172 1 8704 75.877 35.162 1 286190000 18376 22944 17552 22045 23639 15970 25752 20214 24504 3435.4 17385 21669 17800 22592 23658 16338 26078 20215 24231 3702.6 1 1 1 1 1 1 1 1 1 1 3902 432 3446 3660 4331 4331 703 RRSPPADAIPK 11 Phospho (STY) _RRS(ph)PPADAIPK_ RRS(1)PPADAIPK RRS(66.25)PPADAIPK 0 0 1 2 P18754 P18754 P18754 RCC1 Regulator of chromosome condensation MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 437.251312255859 4 322.669685 1286.64963 46400.2663273303 0.82662 0.00026672 355100 114.58 355110 114.58 437.251229967376 38.839 1.7377 38.839 38.123 39.861 0 203 59 5 0.914813844077176 0.00691431390271216 0.125975364241235 0.011292 1 8909 66.246 28.525 1 114020000 31035 50424 30554 47899 60235 32114 59963 46740 50207 1559.6 29365 47620 31156 49082 59361 33081 60783 46363 49953 2550.2 1 1 1 1 1 1 1 1 1 1 3903 432 3446 3660 4332 4332 703 RRSPPPGPDGHAK 13 Phospho (STY) _RRS(ph)PPPGPDGHAK_ RRS(1)PPPGPDGHAK RRS(89.98)PPPGPDGHAK 0 0 1 2 P57081 P57081 P57081 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 478.261383056641 4 363.678041 1450.68306 44857.1406608449 0.89447 0.0003253 315060 114.58 315060 114.58 478.259767665092 24.096 1.5377 24.096 23.556 25.094 0 174 52 5 0.969267869351318 0.00171733859303909 0.0104048752947146 0.0040886 2 5328 89.982 54.226 1 66741000 9538 9338.4 8787.2 9152.1 10563 10001 10829 11192 9307.1 8042.6 9022.5 8820.6 8913.6 9422.1 10617 10017 10969 11423 9247.9 7832.1 2 2 2 2 2 2 2 2 2 2 3904 733 3447 3661 4333;4334 4334 1217 RRSPPPR 7 Phospho (STY) _RRS(ph)PPPR_ RRS(1)PPPR RRS(89.61)PPPR 0 0 1 2 P84103 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 392.218872070313 3 315.830793 944.470548 49361.8261396714 0.39688 0.00012535 241860 76.388 241860 76.388 392.218767381424 18.124 3.2979 18.124 17.354 20.652 3.5527E-15 398 126 5 0.998626751550936 0.152743894608844 1 0.008868 3 4238 89.609 38.121 1 132900000 29608 28789 28489 30377 28339 28985 28521 29664 31549 26093 28012 27205 28750 31071 28773 29173 29106 30515 31001 25256 3 3 3 3 3 3 3 3 3 3 3905 814 3448 3662 4335;4336;4337 4336 1302 RRSPSLSSK 9 Phospho (STY) _RRS(ph)PSLSSK_ RRS(1)PSLSSK RRS(38.58)PS(-38.58)LS(-81.47)S(-99.77)K 0 0 1 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 519.296020507813 3 366.520284 1096.53902 42834.4380817019 1.2791 0.0004688 416830 152.78 416830 152.78 519.295775942657 28.734 1.5404 28.734 28.209 29.749 0 182 52 5 0.963841848751131 0.0237555377441892 0.237274006687596 5.4816E-06 1 6335 152.16 116.94 4 594560000 42038 58472 45921 58871 59563 42777 69233 56850 62707 3422.3 39793 55238 46202 60164 59770 43778 69830 56582 62150 4538.2 1 1 1 1 1 1 1 1 1 1 3906 1436 3449 3663 4338 4338 2649;2650 RRSPSLSSK 9 2 Phospho (STY) _RRS(ph)PS(ph)LSSK_ RRS(1)PS(0.997)LS(0.003)SK RRS(62.55)PS(24.82)LS(-24.82)S(-38.69)K 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 545.951293945313 3 393.175727 1176.50535 41876.2351741852 1.803 0.0007089 388570 152.78 388570 152.78 545.951016607264 30.375 3.6186 30.375 29.665 33.284 0 264 122 4 0.9918522557066 0.0194581194666508 0.552327967057161 0.0007223 2 6849 100.73 68.473 6 134650000 88485 68519 93753 62904 78106 93684 79636 86401 71881 9904.1 83749 64695 93912 65425 80200 92458 80776 87247 71253 11326 2 2 2 2 2 2 2 2 2 2 3907 1436 3449 3664 4339;4340 4339 2649;2650 RRSPSPAPPPR 11 2 Phospho (STY) _RRS(ph)PS(ph)PAPPPR_ RRS(1)PS(1)PAPPPR RRS(49.19)PS(49.19)PAPPPR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 536.265991210938 3 459.877793 1376.61155 42828.2841757019 1.4365 0.00066064 166100 76.388 166110 76.388 536.265455846808 22.571 2.3116 22.571 21.941 24.253 3.5527E-15 192 79 5 0.89586966106959 0.00471619306452878 0.0887856385188048 0.038821 1 5249 49.188 26.654 1 23149000 3551.2 3257.5 2652.6 3146 3868.6 2875.6 3536.8 3606.1 3707.2 2323.4 3357 3076.6 2736.9 3232.7 3849.5 2907.9 3620.7 3658.9 3650.6 2271.2 1 1 1 1 1 1 1 1 1 1 3908 1436 3450 3665 4341 4341 2651;2652 RRSPSPPPTR 10 2 Phospho (STY) _RRS(ph)PS(ph)PPPTR_ RRS(1)PS(0.999)PPPT(0.001)R RRS(48.99)PS(28.83)PPPT(-28.83)R 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.918395996094 3 437.530393 1309.56935 43870.4409946365 1.354 0.00059243 174590 76.388 174590 76.388 513.918069682911 21.727 2.3867 21.727 21.198 23.585 0 191 82 4 0.975102268868714 0.0197908386972459 0.366738249869898 0.0062584 1 4905 85.287 52.083 3 11509000 5207.9 6016.6 5005.2 5434.6 7316.4 5061.1 5617.6 5963.8 6688.1 3401.5 4927.2 5680.4 5076.7 5609.6 7265.2 5107.3 5829.1 6049.6 6553.7 3341 1 1 1 1 1 1 1 1 1 1 3909 1436 3451 3666 4342 4342 2653;2654 RRSPSPTPTPGPSR 14 2 Phospho (STY) _RRS(ph)PS(ph)PTPTPGPSR_ RRS(0.987)PS(0.864)PT(0.149)PTPGPSR RRS(18.22)PS(7.97)PT(-7.97)PT(-36.47)PGPS(-57.06)R 0 0 2 2 P49450 P49450 P49450 CENPA Histone H3-like centromeric protein A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.969787597656 3 551.581704 1651.72328 39845.6430646973 1.6191 0.00089305 138490 76.388 138490 76.389 627.96935456885 24.233 1.5683 24.233 23.845 25.413 3.5527E-15 153 53 5 0.985586176113644 0.0040618750750994 0.07306549120156 0.011004 1 5386 76.378 58.872 10 14767000 4147.3 3454.6 3245.8 2933.7 4137 4263.7 3717.5 3801.4 4264 2254.3 3921 3260.4 3330.3 3065.4 4140.2 4212.8 3819.2 3899 4184.1 2210.7 1 1 1 1 1 1 1 1 1 1 3910 639 3452 3667 4343 4343 1055;1056 RRSPSPYYSR 10 Phospho (STY) _RRS(ph)PSPYYSR_ RRS(1)PSPYYSR RRS(35.62)PS(-35.62)PY(-101.46)Y(-124.78)S(-112.14)R 0 0 1 2 P62995;Q13595 P62995;Q13595 P62995 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 526.598571777344 3 450.210109 1347.6085 42088.6316943438 0.92499 0.00041644 169670 76.388 169670 76.388 526.598153522766 26.319 0.49277 26.319 26.102 26.595 0 58 16 6 0.983385517204672 0.0120561985775529 0.172375114935348 1.3567E-06 1 5855 162.94 136.27 5 131090000 12488 19849 12905 18917 31994 13318 44366 26851 20051 2733.2 11819 18745 13227 19390 31492 13774 43901 26491 20816 3195.1 1 1 1 1 1 1 1 1 1 1 3911 776;970 3453 3668 4344 4344 1251;1252 RRSPSPYYSR 10 2 Phospho (STY) _RRS(ph)PS(ph)PYYSR_ RRS(0.991)PS(0.935)PY(0.062)Y(0.003)S(0.008)R RRS(20.34)PS(12.37)PY(-12.37)Y(-24.96)S(-20.44)R 0 0 2 2 P62995;Q13595 P62995;Q13595 P62995 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 553.254028320313 3 476.865553 1427.57483 41682.7725198879 1.2324 0.00058769 160190 76.388 160190 76.388 553.253786371798 27.243 4.854 27.243 26.679 31.532 0 559 165 6 0.997859639556242 0.0436989525507058 0.518351498810676 0.00017307 3 6196 119.02 92.98 10 901050000 228910 295690 244690 265790 233990 260510 327430 0 0 100690 216670 279150 245530 274650 239100 258290 319840 0 0 94808 3 3 3 3 3 3 3 0 0 3 3912 776;970 3453 3669 4345;4346;4347 4346 1251;1252 RRSPSPYYSR 10 2 Phospho (STY) _RRS(ph)PS(ph)PYYSR_ RRS(0.923)PS(0.761)PY(0.088)Y(0.002)S(0.226)R RRS(11.78)PS(5.45)PY(-11.78)Y(-29.35)S(-5.45)R 0 0 2 2 P62995;Q13595 P62995;Q13595 P62995 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.377563476563 2 714.794691 1427.57483 34609.5592157992 1.7799 0.0012723 160300 114.58 160300 114.58 829.376117219339 27.257 2.7179 27.257 26.74 29.458 0 273 93 5 0.984332660932153 0.00135585728189304 0.0238873011044685 0.0045807 1 6369 86.262 72.647 10 148150000 6761.2 7173.6 6952.2 6239 6460.1 7004.4 7131.9 6763.7 7707.6 2981.6 6398.5 6771.4 6984.7 6475.3 6594.8 6989.3 7243.2 6883.7 7580.7 2964.1 1 1 1 1 1 1 1 1 1 1 3913 776;970 3453 3669 4348 4348 1251;1252 RRSQSIEQESQEK 13 2 Phospho (STY) _RRS(ph)QS(ph)IEQESQEK_ RRS(1)QS(1)IEQESQEK RRS(39.3)QS(41.3)IEQES(-39.3)QEK 0 0 2 2 Q5VTL8 Q5VTL8 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.770935058594 4 441.938294 1763.72407 41852.367085304 1.7533 0.00077486 259270 114.58 259270 114.58 556.519740067948 30.604 1.6897 30.604 29.985 31.674 0 120 56 4 0.558738597448948 0.00103459852770354 0.0182905655549233 0.00017201 1 6914 109.42 85.133 3 17479000 8376.5 7659.2 7639.7 8273.4 8117.9 7177.6 8857.6 8359.4 8719 3059.3 7923.5 7238.8 7742.3 8439.8 8220.1 7264 8976.9 8431.5 8608.9 3074.2 1 1 1 1 1 1 1 1 1 1 3914 1203 3454 3670 4349 4349 2107;2108 RRSQSIEQESQEK 13 2 Phospho (STY) _RRS(ph)QS(ph)IEQESQEK_ RRS(1)QS(0.999)IEQES(0.002)QEK RRS(33.77)QS(28.67)IEQES(-28.67)QEK 0 0 2 2 Q5VTL8 Q5VTL8 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.693115234375 3 588.9153 1763.72407 36227.8561266696 2.2937 0.0013508 259420 152.77 259420 152.78 741.690521920552 30.606 3.159 30.606 29.693 32.852 -3.5527E-15 308 106 4 0.462380198011135 0.0013205049324992 0.0123180371443737 0.0087121 1 7210 80.859 57.059 3 144920000 11117 13853 11670 14498 14372 11522 14290 12420 13734 6921.4 10521 13090 11752 14799 14423 11706 14535 12632 13575 6804.8 1 1 1 1 1 1 1 1 1 1 3915 1203 3454 3670 4350 4350 2107;2108 RRSSDEDAAGEPK 13 Phospho (STY) _RRSS(ph)DEDAAGEPK_ RRS(0.374)S(0.626)DEDAAGEPK RRS(-2.24)S(2.24)DEDAAGEPK 0 0 1 2 Q9BUI4 Q9BUI4 Q9BUI4 POLR3C DNA-directed RNA polymerase III subunit RPC3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.658813476563 3 499.882498 1496.62566 38887.4182383148 1.7117 0.00085563 305620 152.78 305620 152.78 652.657818351606 25.44 1.4478 25.44 25.094 26.542 3.5527E-15 107 49 4 0.772702614376417 0.00346143539019373 0.0639996069341428 0.00014537 1 5701 118.96 89.275 2 14933000 9024.7 7377.4 8016.9 6211.1 6385.3 8240.6 6668.4 7342.5 6681 2505.4 8535.9 6962.5 8111 6481.1 6580.2 8162.8 6774.6 7475.4 6591.7 2529.1 1 1 1 1 1 1 1 1 1 1 3916 1834 3455 3671 4351 4351 3356;3357 RRSSSPFLSK 10 2 Phospho (STY) _RRS(ph)S(ph)SPFLSK_ RRS(0.877)S(0.697)S(0.425)PFLSK RRS(6.71)S(2.78)S(-2.78)PFLS(-42.11)K 0 0 2 2 Q9NYV4 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.974365234375 3 442.198532 1323.57377 40797.8466413471 1.9737 0.00087275 345490 152.78 345490 152.78 594.973682753087 49.45 1.6491 49.45 48.884 50.533 0 130 56 4 0.945977125513937 0.00230483199350524 0.0448013722847577 0.0086947 1 11434 78.69 46.627 6 24246000 16167 14149 17018 15814 14392 15141 14015 15491 13869 4358 15301 13375 17054 16125 14755 15219 14281 15657 13691 4462.1 1 1 1 1 1 1 1 1 1 1 3917 2077 3456 3672 4352 4352 3766;3767 RRSSSPFLSK 10 2 Phospho (STY) _RRS(ph)S(ph)SPFLSK_ RRS(0.853)S(0.615)S(0.532)PFLSK RRS(5.03)S(0.85)S(-0.85)PFLS(-34.93)K 0 0 2 2 Q9NYV4 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.974304199219 3 442.198532 1323.57377 NaN NaN NaN NaN NaN NaN NaN NaN 50.344 1 50.344 49.844 50.844 0 NaN NaN NaN 0.046161 1 11696 48.351 14.465 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3918 2077 3456 3672 4353 4353 3766;3767 RRTASPPPPPK 11 2 Phospho (STY) _RRT(ph)AS(ph)PPPPPK_ RRT(1)AS(1)PPPPPK RRT(110.04)AS(110.04)PPPPPK 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 607.990356445313 3 455.214293 1362.62105 39782.8995700363 1.9859 0.00090401 335610 152.78 335610 152.78 607.989805786331 30.06 1.9889 30.06 29.25 31.239 0 210 66 5 0.981093249632508 0.0143894957071914 0.355425291693767 0.00029906 1 6708 110.04 83.92 1 87748000 49651 50111 53430 54627 50825 48473 46446 53796 63300 4273.1 46997 47364 53544 55715 51685 48937 47950 53883 61744 5268.7 1 1 1 1 1 1 1 1 1 1 3919 1436 3457 3673 4354 4354 2655;4661 RRTLDMLIR 9 Oxidation (M),Phospho (STY) _RRT(ph)LDM(ox)LIR_ RRTLDM(1)LIR RRT(1)LDMLIR RRTLDM(40.48)LIR RRT(40.48)LDMLIR 0 1 1 2 Q5VVW2 Q5VVW2 Q5VVW2 GARNL3 GTPase-activating Rap/Ran-GAP domain-like protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 500.278045654297 3 423.88809 1268.64244 44313.6141925795 0.60431 0.00025616 180210 76.389 180210 76.39 500.277549397646 65.496 0.88099 65.496 65.138 66.019 0 84 29 4 0.946113469036248 0.00206451542528396 0.0516702455760651 0.036295 1 15346 40.475 16.542 1 17618000 11941 5377.7 12930 4989.5 10478 12424 7718.2 6732 5100 1402.2 11303 5077.9 12928 5266.2 10737 12052 7917.3 7015.5 5143.2 1476.2 1 1 1 1 1 1 1 1 1 1 3920 1209 3458 3674 4355 4355 159 4611 RRTPSPPPR 9 2 Phospho (STY) _RRT(ph)PS(ph)PPPR_ RRT(1)PS(1)PPPR RRT(80.96)PS(80.96)PPPR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 484.908111572266 3 408.519717 1222.53732 44528.4798703171 1.3057 0.00053342 186990 76.388 186990 76.388 484.907537922905 22.558 3.322 22.558 21.539 24.861 3.5527E-15 328 114 5 0.990455877212001 0.0844309392181576 0.878104583025015 0.014327 1 5076 80.96 66.273 1 82374000 39101 43995 37816 38544 44337 38408 48884 37574 46235 8251.8 36995 41529 38241 39907 44670 38510 49469 37971 45733 8639.7 1 1 1 1 1 1 1 1 1 1 3921 1436 3459 3675 4356 4356 2656;4662 RRTPTPPPR 9 2 Phospho (STY) _RRT(ph)PT(ph)PPPR_ RRT(1)PT(1)PPPR RRT(83.21)PT(83.21)PPPR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 489.579559326172 3 413.1916 1236.55297 43947.198402123 1.3623 0.00056287 184870 76.387 184870 76.388 489.57911103528 22.631 2.8515 22.631 21.343 24.195 0 297 98 5 0.982265841115683 0.0208675588606368 0.483783758095213 0.0049816 1 5124 83.214 46.754 1 53185000 14720 16826 15633 17213 19810 16332 18766 17375 16956 3517 13933 15897 15738 17636 19840 16429 19103 17494 16807 3713.8 1 1 1 1 1 1 1 1 1 1 3922 1436 3460 3676 4357 4357 4663;4664 RRVSHSPPPK 10 2 Phospho (STY) _RRVS(ph)HS(ph)PPPK_ RRVS(1)HS(1)PPPK RRVS(73.93)HS(73.93)PPPK 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 445.486663818359 4 330.904798 1319.59008 47425.8456860489 0.83675 0.00027688 346270 114.58 346270 114.58 445.486115208912 25.11 1.6207 25.11 24.481 26.102 0 156 55 4 0.655704768644432 0.00349306006274632 0.0300139027450858 0.011084 1 5616 73.927 54.852 1 11446000 9516.3 10453 9206.2 10017 10172 8919 10112 9661.7 11913 4182.6 9003.7 9872 9299.6 10294 10267 9006.2 10346 9788.6 11678 4162 1 1 1 1 1 1 1 1 1 1 3923 1436 3461 3677 4358 4358 2657;2658 RSASASHQADIK 12 Phospho (STY) _RSAS(ph)ASHQADIK_ RS(0.324)AS(0.637)AS(0.039)HQADIK RS(-2.93)AS(2.93)AS(-12.08)HQADIK 0 0 1 1 Q14739 Q14739 Q14739 LBR Lamin-B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.653259277344 3 450.876907 1349.60889 39741.8136156214 2.0214 0.00091139 338840 152.78 338840 152.78 603.652468008831 28.286 0.77443 28.286 28.063 28.837 3.5527E-15 72 26 4 0.98110558200062 0.00803780344203715 0.124704720422338 2.8456E-07 1 6315 153.21 77.75 3 49589000 10159 13535 9758.9 12062 10756 13256 20804 19124 12469 2364.9 9611.6 12777 9880.8 12494 10991 13312 20466 19027 12656 2669.5 1 1 1 1 1 1 1 1 1 1 3924 1026 3462 3678 4359 4359 1756;1757 RSDAEEVDFAGWLCSTIGLNQPSTPTHAAGV 31 Phospho (STY) _RSDAEEVDFAGWLCSTIGLNQPST(ph)PTHAAGV_ RSDAEEVDFAGWLCSTIGLNQPS(0.15)T(0.822)PT(0.028)HAAGV RS(-119.7)DAEEVDFAGWLCS(-85.31)T(-78.34)IGLNQPS(-7.38)T(7.38)PT(-14.65)HAAGV 0 0 1 1 Q02750 Q02750 Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1199.56506347656 3 1122.8414 3365.50238 27856.0209498043 1.5468 0.0017368 68030 76.387 68032 76.389 1199.56280155502 100.8 0.17031 100.8 100.7 100.87 0 22 5 6 0.991668808434959 0.00369245232964725 0.0467576902265139 4.7708E-07 1 23625 140.61 125.33 6 125770000 3843.9 3961.7 3317.4 4070.2 7001.5 3210.7 3073.3 6549.8 8005.2 84023 3635.3 3743.1 3408.4 4158.7 6836.7 3456.7 3452 8972.2 7689.5 79269 1 1 1 1 1 1 1 1 1 1 3925 853 3463 3679 4360 4360 4509 RSDSASSEPVGIYQGFEK 18 Phospho (STY) _RSDSAS(ph)SEPVGIYQGFEK_ RS(0.019)DS(0.353)AS(0.613)S(0.015)EPVGIYQGFEK RS(-15.04)DS(-2.4)AS(2.4)S(-16.04)EPVGIY(-121.32)QGFEK 0 0 1 1 Q05655 Q05655 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 832.410034179688 3 679.636881 2035.88881 34106.2855067368 1.8825 0.0012794 224790 152.77 224790 152.78 832.746010716993 71.194 0.92443 71.194 70.855 71.779 0 100 31 5 0.853457516590913 0.00390226588862418 0.0530897542011063 4.3768E-11 1 16677 197.47 169.57 5 56433000 27847 10500 31349 10536 11749 32446 15582 21426 10371 18263 26364 9919.5 31133 11168 13129 31441 15535 22469 10454 17693 1 1 1 1 1 1 1 1 1 1 3926 871 3464 3680 4361 4361 1416;1417 RSDSLLSFR 9 Phospho (STY) _RSDS(ph)LLSFR_ RS(0.013)DS(0.987)LLSFR RS(-18.87)DS(18.87)LLS(-55.68)FR 0 0 1 1 Q00587 Q00587 Q00587 CDC42EP1 Cdc42 effector protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 463.907745361328 3 387.520172 1159.53869 46682.2732858941 0.22148 8.5829E-05 197120 76.386 197120 76.386 463.907698688538 65.204 0.77918 65.204 64.938 65.717 0 53 26 3 0.970920723446485 0.00194942841243645 0.0593833300618879 0.00015512 1 15312 126.83 81.234 3 9638800 8882.7 7660.6 8337.9 6903.1 5648.4 9620.5 5816.5 6929.3 7306.1 1647.3 8403.3 7232.4 8394.5 7177.8 5894.6 9491.2 5953.4 7104.6 7145.8 1711.5 1 1 1 1 1 1 1 1 1 1 3927 824 3465 3681 4362 4362 1324 RSDSPENK 8 Phospho (STY) _RSDS(ph)PENK_ RSDS(1)PENK RS(-33.99)DS(33.99)PENK 0 0 1 1 Q9BTA9 Q9BTA9 Q9BTA9 WAC WW domain-containing adapter protein with coiled-coil MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 490.91748046875 3 338.141361 1011.40225 44294.856193395 1.0654 0.00036025 451810 152.78 451810 152.78 490.916860468312 24.789 0.70112 24.789 24.626 25.327 0 55 23 4 0.914396581046166 0.00661206578200154 0.103366501875026 7.3451E-05 1 5537 136.94 102.41 2 13893000 12032 11140 12462 11240 9218.6 10921 9803.7 11737 11949 2414.5 11387 10524 12485 11530 9556.9 10975 10010 11814 11699 2545.2 1 1 1 1 1 1 1 1 1 1 3928 1821 3466 3682 4363 4363 3336 RSDSQQAVK 9 Phospho (STY) _RSDS(ph)QQAVK_ RS(0.004)DS(0.996)QQAVK RS(-24.33)DS(24.33)QQAVK 0 0 1 1 Q15036 Q15036 Q15036 SNX17 Sorting nexin-17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 519.611877441406 3 366.83616 1097.48665 43381.126348422 0.70059 0.000257 416470 152.78 416470 152.78 519.611931887848 27.3 0.46069 27.3 27.12 27.581 0 41 15 4 0.696478271159471 0.00387245511246929 0.0267923313197091 7.1613E-05 1 6069 133.48 94.844 2 33503000 18864 15829 19782 16541 13434 17434 12760 14765 18472 3301 17853 14957 19787 16955 14003 17408 13177 15013 17984 3450 1 1 1 1 1 1 1 1 1 1 3929 1049 3467 3683 4364 4364 1810 RSDSVSASER 10 Phospho (STY) _RSDS(ph)VSASER_ RS(0.012)DS(0.984)VS(0.004)ASER RS(-19.3)DS(19.3)VS(-23.78)AS(-50.26)ER 0 0 1 1 O43719 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 468.222442626953 3 391.834708 1172.48229 45996.3632403351 0.79644 0.00031207 194950 76.388 194950 76.388 468.222236333435 22.557 0.31757 22.557 22.371 22.689 -3.5527E-15 22 10 3 0.791110770858549 0.00408199423178227 0.0553547140229594 0.00036384 1 5071 101.2 51.852 4 4427400 3392.6 2988.7 3631.6 3877.6 2618.4 4450.7 3585.1 3777.9 3862.1 2420.5 3211.1 2828.4 3632.5 3936.3 2730.9 4431.7 3610.4 3888.5 3799 2366.6 1 1 1 1 1 1 1 1 1 1 3930 124 3468 3684 4365 4365 213 RSEEKEAGEI 10 Phospho (STY) _RS(ph)EEKEAGEI_ RS(1)EEKEAGEI RS(137.33)EEKEAGEI 0 0 1 2 Q9NQ29 Q9NQ29 Q9NQ29 LUC7L Putative RNA-binding protein Luc7-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 562.622375488281 3 409.846614 1226.51801 40730.7820253232 1.5012 0.00061524 372760 152.78 372760 152.78 562.621271410079 43.041 0.67371 43.041 42.708 43.382 7.1054E-15 81 22 6 0.81369588348357 0.00151522302324521 0.0167063951909051 1.9393E-05 1 9812 137.33 119.47 1 57020000 14540 15507 14952 14371 15290 15111 16563 17252 17009 2878.2 13760 14642 15039 14836 15515 15145 16811 17309 16764 3109.4 1 1 1 1 1 1 1 1 1 1 3931 2000 3469 3685 4366 4366 3631 RSESPPAELPSLR 13 Phospho (STY) _RSES(ph)PPAELPSLR_ RS(0.243)ES(0.757)PPAELPSLR RS(-4.93)ES(4.93)PPAELPS(-105.23)LR 0 0 1 1 Q14669 Q14669 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.638671875 3 506.91525 1517.72392 41192.5256998264 1.239 0.00062806 150690 76.388 150690 76.389 583.303153486406 57.844 1.3015 57.844 56.868 58.17 0 100 44 3 0.975990908888217 0.00349259738852672 0.10887595755445 0.00010187 1 13486 119.51 87.231 3 22261000 8410.6 6950.6 10972 6588.6 9227.9 8175.6 8941.7 7702.5 6962 2036.7 7968.2 6564 10879 6812.6 9461.5 8121.9 9061.4 7805.9 6953.4 2096.1 1 1 1 1 1 1 1 1 1 1 3932 1014 3470 3686 4367 4367 1723 RSKSPHK 7 Phospho (STY) _RSKS(ph)PHK_ RS(0.048)KS(0.952)PHK RS(-13.01)KS(13.01)PHK 0 0 1 2 Q8WXA9 Q8WXA9 Q8WXA9 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 402.490600585938 4 230.618193 918.443665 49560.4399770027 0.23068 5.32E-05 745270 171.87 745270 171.87 402.490552200004 24.221 0.54725 24.221 24.05 24.597 -3.5527E-15 54 18 4 0.910695634619396 0.0123674295836093 0.310948544599703 0.014003 1 5424 65.5 8.1521 2 21213000 19893 30915 18857 30441 24876 21875 30385 28962 33740 4445 18820 29202 19131 31147 24970 22406 30757 28910 33149 4855.8 1 1 1 1 1 1 1 1 1 1 3933 1579 3471 3687 4368 4368 2905 RSLSPILPGR 10 Phospho (STY) _RSLS(ph)PILPGR_ RS(0.06)LS(0.94)PILPGR RS(-11.97)LS(11.97)PILPGR 0 0 1 1 Q6ZSZ5 Q6ZSZ5 Q6ZSZ5 ARHGEF18 Rho guanine nucleotide exchange factor 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 468.935760498047 3 392.548062 1174.62236 46595.5914101445 0.44889 0.00017621 194590 76.388 194590 76.388 468.935722957887 60.935 0.67577 60.935 60.656 61.331 7.1054E-15 52 22 3 0.972922797861385 0.00114843694093185 0.0263488169122463 0.0082053 1 14310 78.985 51.243 2 5580100 5599 2985.6 4829.4 2913.4 3699.6 5328.4 2801.3 3431.1 2942.6 471.41 5295.2 2820 4891.7 3034.6 3808.5 5210.2 2898.5 3529.4 2897.5 523.3 1 1 1 1 1 1 1 1 1 1 3934 1299 3472 3688 4369 4369 2319;2320 RSLTNSHLEK 10 Phospho (STY) _RS(ph)LTNSHLEK_ RS(0.873)LT(0.111)NS(0.015)HLEK RS(8.94)LT(-8.94)NS(-17.6)HLEK 0 0 1 1 Q9H2H9 Q9H2H9 Q9H2H9 SLC38A1 Sodium-coupled neutral amino acid transporter 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 575.318176269531 3 422.206365 1263.59726 41809.8393735418 1.4598 0.00061633 361850 152.78 361860 152.78 575.317375170511 40.993 0.50873 40.993 40.744 41.253 0 68 17 5 0.84812043862798 0.00832527794411398 0.133033903409308 0.019361 1 9357 60.158 10.034 3 52546000 54847 30085 54214 39898 28480 65416 28554 38111 41515 7105 51897 28476 54312 40777 30434 64101 29416 39500 40413 7572.2 1 1 1 1 1 1 1 1 1 1 3935 1919 3473 3689 4370 4370 3484;3485 RSNSPDK 7 Phospho (STY) _RSNS(ph)PDK_ RS(0.008)NS(0.992)PDK RS(-21.18)NS(21.18)PDK 0 0 1 1 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 447.902526855469 3 295.127163 882.35966 46424.1600876901 1.2758 0.00037651 517660 152.78 517660 152.78 447.902155843614 23.468 0.34705 23.468 23.324 23.671 0 31 11 4 0.759417506077757 0.00632157089279853 0.138539977479067 0.016121 1 5256 65.5 43.414 2 6350900 8966.9 8492.8 8135.6 8441.3 6144.9 8139.1 6759.2 7714.3 8338.1 4837.2 8481.9 8022.6 8216.7 8665.6 6363.6 8175.5 6894 7900.3 8160.2 4733.3 1 1 1 1 1 1 1 1 1 1 3936 1101 3474 3690 4371 4371 1915 RSNSPDKFK 9 Phospho (STY) _RSNS(ph)PDKFK_ RS(0.05)NS(0.95)PDKFK RS(-12.78)NS(12.78)PDKFK 0 0 1 2 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.011779785156 3 386.848289 1157.52304 39525.8374412885 1.3072 0.00050567 592380 229.16 592390 229.16 616.01097500724 40.504 0.78314 40.504 40.21 40.993 0 84 26 5 0.857844682884041 0.00276478811162639 0.0304891096434365 0.0063281 2 9182 89.507 67.352 2 144120000 82224 68819 83964 66358 67074 80575 74989 74984 77160 7384.6 77811 64997 84255 68513 69178 80074 76011 75654 76041 8688.9 2 2 2 2 2 2 2 2 2 2 3937 1101 3475 3691 4372;4373 4372 1915 RSPEAPQPVIAMEEPAVPAPLPK 23 Oxidation (M),Phospho (STY) _RS(ph)PEAPQPVIAM(ox)EEPAVPAPLPK_ RSPEAPQPVIAM(1)EEPAVPAPLPK RS(1)PEAPQPVIAMEEPAVPAPLPK RSPEAPQPVIAM(120.85)EEPAVPAPLPK RS(120.85)PEAPQPVIAMEEPAVPAPLPK 0 1 1 1 P14317 P14317 P14317 HCLS1 Hematopoietic lineage cell-specific protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.403259277344 4 630.819654 2519.24951 36839.6484610122 2.1842 0.0013778 181640 114.58 181640 114.58 745.65253483904 75.374 0.57199 75.374 74.973 75.545 0 63 19 5 0.784587372523103 0.00322916069223817 0.112624367978248 4.8173E-05 1 17687 120.85 106.08 1 17249000 6949.2 4314.5 5926.6 4383.4 7922.9 5752.9 7018 6748 5973.8 8023.8 6571.9 4076.2 6049.3 4518.5 7908.5 5732.9 7158.6 6971.9 5938.6 7711.5 1 1 1 1 1 1 1 1 1 1 3938 387 3476 3692 4374 4374 50 621 RSPEAPQPVIAMEEPAVPAPLPK 23 Phospho (STY) _RS(ph)PEAPQPVIAMEEPAVPAPLPK_ RS(1)PEAPQPVIAMEEPAVPAPLPK RS(127)PEAPQPVIAMEEPAVPAPLPK 0 0 1 1 P14317 P14317 P14317 HCLS1 Hematopoietic lineage cell-specific protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 988.199645996094 3 835.425475 2503.2546 31926.9950007838 1.454 0.0012147 182870 152.78 182870 152.78 988.535621118369 85.726 0.71485 85.726 85.387 86.102 1.4211E-14 70 24 5 0.644836895019756 0.00142549230597388 0.0174333939198266 2.7076E-05 1 19990 127 112.77 1 38583000 6419.2 3986.2 4884.4 3367.1 6503.6 5766.6 6933.6 6481.9 4872.8 56906 6068.4 3762.1 5027.1 3533.6 6508.4 5789.2 6980.7 8188.8 4895.4 53734 1 1 1 1 1 1 1 1 1 1 3939 387 3476 3693 4375 4375 621 RSPERPTGDLR 11 Phospho (STY) _RS(ph)PERPTGDLR_ RS(1)PERPTGDLR RS(54.31)PERPT(-54.31)GDLR 0 0 1 2 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.609008789063 3 455.220785 1362.64053 42797.0452137874 0.60026 0.00027325 167800 76.388 167800 76.388 531.60861322542 26.84 0.55986 26.84 26.679 27.238 0 53 18 5 0.964498660126564 0.011497997405301 0.0766316850095596 0.00026467 1 5970 103.79 65.28 2 109110000 27935 24622 28431 24241 19507 26821 20025 24852 25476 4339.8 26436 23258 28492 24955 20335 26753 20509 25135 24906 4661.6 1 1 1 1 1 1 1 1 1 1 3940 1183 3477 3694 4376 4376 2066 RSPESCSKPEK 11 Phospho (STY) _RS(ph)PESCSKPEK_ RS(1)PESCSKPEK RS(37.16)PES(-37.16)CS(-55.43)KPEK 0 0 1 2 Q03111 Q03111 Q03111 MLLT1 Protein ENL MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 518.776611328125 4 346.903621 1383.58538 42882.8969659585 1.4889 0.0005165 495450 171.87 495450 171.87 518.775916912535 31.017 0.56906 31.017 30.7 31.269 0 60 18 5 0.588827385124422 0.00558061287915947 0.121269303024414 0.0096135 1 6907 71.548 39.025 3 65229000 22107 15870 25048 16847 15956 21779 17699 20898 17423 1916.7 20930 14998 24945 17318 16754 21602 17925 21054 17203 2288.4 1 1 1 1 1 1 1 1 1 1 3941 856 3478 3695 4377 4377 1383 RSPLGQK 7 Phospho (STY) _RS(ph)PLGQK_ RS(1)PLGQK RS(73.26)PLGQK 0 0 1 1 Q68D20;P54278 Q68D20 Q68D20 PMS2CL;PMS2 Protein PMS2CL;Mismatch repair endonuclease PMS2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 441.923065185547 3 289.147899 864.421867 47515.9855593436 0.081584 2.359E-05 528360 152.78 528360 152.78 441.92331060851 35.691 0.49026 35.691 35.418 35.908 0 50 16 4 0.864078765440399 0.00312701262559162 0.0563603930013537 0.012989 1 8006 73.26 36.926 1 33896000 25723 35360 26363 33169 22994 24339 23681 25258 36768 1840.8 24343 33391 26469 34049 23556 24806 24431 25355 35724 2317.9 1 1 1 1 1 1 1 1 1 1 3942 710 3479 3696 4378 4378 1190 RSPPEEPPDFCCPK 14 Phospho (STY) _RS(ph)PPEEPPDFCCPK_ RS(1)PPEEPPDFCCPK RS(108.92)PPEEPPDFCCPK 0 0 1 1 Q9Y6K9 Q9Y6K9 Q9Y6K9 IKBKG NF-kappa-B essential modulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.355285644531 3 599.244162 1794.71066 36062.3536723051 1.611 0.00096537 254940 152.77 254950 152.78 752.018774834026 56.077 1.2181 56.077 55.623 56.841 0 94 40 4 0.923794913955414 0.00201218419369892 0.0262428004959876 0.00017354 1 13116 108.92 92.231 1 17676000 18756 18083 18669 16000 15425 19536 14783 18901 19107 54688 17747 17071 18762 16612 15840 19519 15197 20632 18669 51933 1 1 1 1 1 1 1 1 1 1 3943 2316 3480 3697 4379 4379 4271 RSPPWEP 7 Phospho (STY) _RS(ph)PPWEP_ RS(1)PPWEP RS(119.07)PPWEP 0 0 1 1 Q9UBL3 Q9UBL3 Q9UBL3 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 589.284851074219 2 474.702393 947.390232 40635.1444449865 1.5196 0.00072134 241380 114.58 241380 114.58 589.284087705312 62.003 1.4001 62.003 61.274 62.674 0 154 47 4 0.966505036325633 0.00363629899314684 0.0999775045462291 0.0014312 2 14466 119.07 93.446 1 147270000 30093 39711 29942 38875 32258 27653 30755 35991 40042 9267.5 28475 37509 30184 39786 32586 28341 31633 36058 39115 9559.4 2 2 2 2 2 2 2 2 2 2 3944 2122 3481 3698 4380;4381 4380 3822 RSPQQTVPYVVPLSPK 16 Phospho (STY) _RSPQQTVPYVVPLS(ph)PK_ RSPQQTVPYVVPLS(1)PK RS(-64.59)PQQT(-67.27)VPY(-52.28)VVPLS(52.28)PK 0 0 1 1 Q9UQR0 Q9UQR0 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.772216796875 3 625.995793 1874.96555 35638.94565952 1.6352 0.0010237 244050 152.78 244050 152.78 779.105491977576 73.354 0.54696 73.354 73.098 73.645 0 58 18 4 0.841291769513376 0.00330816994776251 0.0327106787221892 0.00014858 1 17230 102.36 91.306 4 31300000 10062 15357 11784 16384 7041.2 11149 7395.4 13340 14863 17727 9527.5 14513 11710 16676 7437.5 11469 7715.3 13830 14348 17001 1 1 1 1 1 1 1 1 1 1 3945 2233 3482 3699 4382 4382 4126;4127 RSPSLSSK 8 Phospho (STY) _RS(ph)PSLSSK_ RS(0.994)PS(0.006)LSSK RS(22.14)PS(-22.14)LS(-51.07)S(-53.1)K 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 467.263061523438 3 314.48658 940.437911 46339.3124513881 0.25986 8.1721E-05 485800 152.78 485800 152.78 467.597070448798 35.205 0.70654 35.205 34.945 35.651 0 46 23 3 0.972417842307255 0.000892987528550769 0.0253573158957345 0.023874 1 7926 58.083 22.139 4 8249500 16723 19398 17286 19244 20202 17478 18028 16820 19325 2711.4 15826 18324 17405 19740 20300 17595 18491 16979 19013 2942.4 1 1 1 1 1 1 1 1 1 1 3946 1436 3483 3700 4383 4383 2649;2650 RSPSPKPTK 9 2 Phospho (STY) _RS(ph)PS(ph)PKPTK_ RS(0.999)PS(0.994)PKPT(0.007)K RS(28.65)PS(22.44)PKPT(-22.44)K 0 0 2 2 Q15287 Q15287 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.672119140625 3 386.508706 1156.50429 39286.9985848626 1.9189 0.00074167 592910 229.16 592910 229.16 615.671807154401 31.794 1.7875 31.794 31.152 32.939 0 179 60 4 0.964095677721192 0.00335918235006282 0.0498223511353836 0.011461 2 7041 70.963 55.072 3 83234000 47686 54741 46129 51263 51971 44969 53152 51488 58069 4584.4 45118 51692 46613 52746 52416 45446 54182 51532 57088 5508.4 2 2 2 2 2 2 2 2 2 2 3947 1067 3484 3701 4384;4385 4384 1843;1844;4571 RSPSPYYSR 9 2 Phospho (STY) _RS(ph)PS(ph)PYYSR_ RS(0.956)PS(0.778)PY(0.044)Y(0.032)S(0.189)R RS(17.14)PS(6.39)PY(-14.4)Y(-16.17)S(-6.39)R 0 0 2 1 P62995;Q13595 P62995;Q13595 P62995 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 751.326843261719 2 636.744135 1271.47372 36333.5315529938 1.6459 0.001048 179950 114.58 179950 114.58 751.325922499037 33.086 1.8977 33.086 32.208 34.105 0 157 65 4 0.554822858582774 0.00296787649438734 0.0668326668600429 0.036963 1 7346 40.861 15.247 10 30304000 53041 59977 53046 53558 64407 59634 65893 59023 60912 10290 50190 56621 53556 55481 64706 59515 66866 59538 60313 11055 1 1 1 1 1 1 1 1 1 1 3948 776;970 3485 3702 4386 4386 1251;1252 RSPSRTEK 8 Phospho (STY) _RS(ph)PSRTEK_ RS(0.498)PS(0.498)RT(0.003)EK RS(0)PS(0)RT(-21.62)EK 0 0 1 2 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 375.458953857422 4 260.87757 1039.48117 50872.4404170702 0.44928 0.00011721 439220 114.58 439220 114.58 375.4589086804 22.853 0.34744 22.853 22.689 23.036 0 28 11 4 0.749802335758199 0.00437996141118811 0.0543214144755964 0.01106 1 5137 70.808 29.821 3 5619100 14447 6730 15343 6008.5 9314.7 17972 10734 11129 6407.6 12030 13674 6353.5 15326 6405.6 9824.5 17417 10740 11791 6505.8 11585 1 1 1 1 1 1 1 1 1 1 3949 1243 3486 3703 4387 4387 2193;2194 RSPVPAQIAITVPK 14 Phospho (STY) _RS(ph)PVPAQIAITVPK_ RS(1)PVPAQIAITVPK RS(91.75)PVPAQIAIT(-91.75)VPK 0 0 1 1 O43432 O43432 O43432 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.400756835938 3 519.623519 1555.84873 38104.4861334762 2.2846 0.0011871 294010 152.78 294010 152.78 672.398781704448 73.782 0.62628 73.782 73.501 74.127 0 87 21 6 0.935268887390298 0.00327649746218319 0.0630322276218462 3.3096E-07 1 17291 163.96 113.83 2 168940000 16515 11428 17957 13829 13263 16459 13980 14801 11688 6910.2 15633 10810 17943 14095 13745 16372 14134 15119 11630 6849.3 1 1 1 1 1 1 1 1 1 1 3950 112 3487 3704 4388 4388 192 RSPVSTRPLPSASQK 15 Phospho (STY) _RS(ph)PVSTRPLPSASQK_ RS(1)PVSTRPLPSASQK RS(48)PVS(-48)T(-52.84)RPLPS(-86.57)AS(-119.03)QK 0 0 1 2 Q8ND56 Q8ND56 Q8ND56 LSM14A Protein LSM14 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.304504394531 4 423.47136 1689.85633 42170.6205820612 0.79402 0.00033624 270580 114.58 270580 114.58 538.30566749792 39.755 0.61528 39.755 39.364 39.979 0 34 20 2 0.774806665964851 0.00199669395875152 0.020985941170241 3.3441E-05 1 8988 131.4 103.07 5 22379000 10415 9349.9 10950 10324 10188 10871 9907.7 9317.3 9956.8 2048.9 9856.9 8838.1 10986 10550 10380 10857 10100 9467.9 9822.3 2145 1 1 1 1 1 1 1 1 1 1 3951 1502 3488 3705 4389 4389 2756 RSQSIEQESQEK 12 Phospho (STY) _RS(ph)QSIEQESQEK_ RS(0.597)QS(0.403)IEQESQEK RS(1.71)QS(-1.71)IEQES(-61.36)QEK 0 0 1 1 Q5VTL8 Q5VTL8 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.001586914063 3 510.226153 1527.65663 38609.7441045682 2.114 0.0010786 299430 152.77 299430 152.78 663.001060767096 33.806 0.46343 33.806 33.587 34.051 0 36 15 3 0.988735056401144 0.00155675870912014 0.0142736832018824 3.4311E-07 1 7579 148.52 106.48 3 14101000 10806 13250 11435 13150 12764 11715 12664 12883 14055 4047.2 10228 12516 11494 13485 12875 11829 12934 12999 13809 4109.1 1 1 1 1 1 1 1 1 1 1 3952 1203 3489 3706 4390 4390 2107;2108 RSQSPVK 7 Phospho (STY) _RSQS(ph)PVK_ RS(0.002)QS(0.998)PVK RS(-28.01)QS(28.01)PVK 0 0 1 1 Q7Z309 Q7Z309 Q7Z309 FAM122B Protein FAM122B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 447.255493164063 3 294.479537 880.416781 46409.0272638537 0.53064 0.00015626 518800 152.78 518800 152.78 447.254922147312 26.558 0.40613 26.558 26.364 26.771 0 29 13 3 0.715664322926664 0.00411825569239923 0.0611748307686553 0.01369 1 5906 71.524 35.616 2 23543000 16274 16758 15540 16323 15741 15274 15980 16076 16967 2304.6 15397 15829 15693 16770 15967 15371 16282 16164 16700 2542.2 1 1 1 1 1 1 1 1 1 1 3953 1329 3490 3707 4391 4391 2389 RSSDTSGSPATPLK 14 Phospho (STY) _RS(ph)SDTSGSPATPLK_ RS(0.686)S(0.307)DT(0.006)SGSPATPLK RS(3.49)S(-3.49)DT(-20.47)S(-43.24)GS(-48.97)PAT(-118.23)PLK 0 0 1 1 Q7Z5R6 Q7Z5R6 Q7Z5R6 APBB1IP Amyloid beta A4 precursor protein-binding family B member 1-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.007690429688 3 495.231127 1482.67155 38580.6687195343 1.8414 0.00091191 308490 152.78 308490 152.78 648.006326269626 42.728 0.99139 42.728 42.308 43.299 0 112 33 5 0.987625114494513 0.0142990845066823 0.139351061862653 1.2625E-10 1 9754 193.47 132.09 6 130080000 51241 7520.5 52782 8149.8 66670 57557 71198 37150 5614.6 2807 48493 7108 53239 9123.4 66839 55236 70460 38139 8321.5 3502.9 1 1 1 1 1 1 1 1 1 1 3954 1351 3491 3708 4392 4392 2448 RSSEEVDGQHPAQEEVPESPQTSGPEAENR 30 Phospho (STY) _RS(ph)SEEVDGQHPAQEEVPESPQTSGPEAENR_ RS(0.5)S(0.5)EEVDGQHPAQEEVPESPQTSGPEAENR RS(0)S(0)EEVDGQHPAQEEVPES(-109.09)PQT(-152.48)S(-161.77)GPEAENR 0 0 1 1 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 897.405151367188 4 839.86293 3355.42261 32654.5952984412 1.9357 0.0016258 68214 57.29 68216 57.292 897.655428697748 38.193 0.34782 38.193 38.035 38.383 0 42 11 6 0.944229310576127 0.00138207876738476 0.0198416005324968 8.9874E-18 1 8653 219.76 201.62 5 17351000 4471.5 2455.3 5807.4 2760.4 2681.1 6050.6 2761.7 3831.8 2901 2853.1 4236.2 2321.2 5732.8 2868.5 2906.6 5895.6 2811.1 4015.5 2856.5 2775.2 1 1 1 1 1 1 1 1 1 1 3955 1243 3492 3709 4393 4393 2195;2196 RSSFSMEEES 10 Phospho (STY) _RS(ph)SFSMEEES_ RS(0.802)S(0.196)FS(0.003)MEEES RS(6.13)S(-6.13)FS(-24.63)MEEES(-111.25) 0 0 1 1 P19532 P19532 P19532 TFE3 Transcription factor E3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.310729980469 2 634.728675 1267.4428 36820.0995187443 0.86826 0.00055111 180520 114.58 180520 114.58 749.309973333147 47.53 0.37675 47.53 47.395 47.772 0 27 13 3 0.721685362478798 0.000963515146632645 0.00986710593199292 2.1721E-06 1 11014 158.05 141.83 4 30634000 20284 19834 21394 22153 22631 20949 24477 23255 22767 8732.1 19198 18750 21497 22585 22917 21098 24780 23500 22537 8760.5 1 1 1 1 1 1 1 1 1 1 3956 440 3493 3710 4394 4394 717 RSSFSMEEGDVL 12 Phospho (STY) _RSS(ph)FSMEEGDVL_ RS(0.254)S(0.714)FS(0.032)MEEGDVL RS(-4.48)S(4.48)FS(-13.45)MEEGDVL 0 0 1 1 P19484 P19484 P19484 TFEB Transcription factor EB MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.375244140625 2 718.791807 1435.56906 34809.699298608 2.0164 0.0014494 159410 114.58 159410 114.58 833.373709115707 77.152 0.86805 77.152 76.912 77.78 -1.4211E-14 83 29 4 0.665640238588068 0.00170942222822697 0.0190506789105406 1.1495E-10 1 18073 184.65 171.56 3 28639000 16789 12280 16843 13016 14186 17267 14420 15596 14839 36109 15887 11605 16925 13387 14556 17165 14679 16796 14624 34361 1 1 1 1 1 1 1 1 1 1 3957 438 3494 3711 4395 4395 713 RSSGFISELPSEEGK 15 Phospho (STY) _RS(ph)SGFISELPSEEGK_ RS(0.467)S(0.467)GFIS(0.065)ELPSEEGK RS(0)S(0)GFIS(-8.56)ELPS(-58.59)EEGK 0 0 1 1 Q5VZK9 Q5VZK9 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.0390625 3 568.260975 1701.7611 35812.9017807229 1.9238 0.0010932 268850 152.78 268850 152.78 721.036803315326 69.878 0.40278 69.878 69.699 70.102 0 21 13 2 0.622716755096004 0.00120139342173033 0.0126632715244257 0.0092811 1 16421 79.635 51.089 4 11175000 6849.3 8367 7631.3 7810.4 16425 6604.9 15977 11157 8065.2 14570 6484.1 7900.8 7746.2 8034 16135 6758.7 16068 11454 8293.4 13978 1 1 1 1 1 1 1 1 1 1 3958 1215 3495 3712 4396 4396 2138;2139 RSSIRGPEGTEQNR 14 Phospho (STY) _RSS(ph)IRGPEGTEQNR_ RS(0.164)S(0.836)IRGPEGTEQNR RS(-7.07)S(7.07)IRGPEGT(-41.71)EQNR 0 0 1 2 Q9BRR9 Q9BRR9 Q9BRR9 ARHGAP9 Rho GTPase-activating protein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 632.649047851563 3 556.26008 1665.75841 38774.6625927268 1.4518 0.00080757 137320 76.388 137330 76.389 632.648055879647 25.41 0.52219 25.41 25.094 25.616 0 53 17 4 0.980918722372731 0.00210051896000964 0.0155410214281508 0.010362 1 5640 83.776 67.638 3 18295000 5201.2 1484.3 5101 1549.1 4768 4892.2 5930.9 3969.8 1999.8 1473.7 4921.2 1402.5 5140.3 1640.4 4871 4745.7 5873.6 4062.1 2139.9 1479.5 1 1 1 1 1 1 1 1 1 1 3959 1814 3496 3713 4397 4397 3328 RSSLDEK 7 Phospho (STY) _RSS(ph)LDEK_ RS(0.073)S(0.927)LDEK RS(-11.06)S(11.06)LDEK 0 0 1 1 Q9NWB6 Q9NWB6 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.866882324219 2 457.70259 913.390626 39708.9163929595 2.1516 0.0009848 500680 229.16 500680 229.16 686.865658961002 32.571 0.52614 32.571 32.356 32.882 0 29 17 2 0.809217153533194 0.000652240331178696 0.0131553810797177 0.023369 1 7295 69.65 9.5481 2 11317000 22914 13554 22724 14916 20606 22570 20136 18992 15265 4840.6 21682 12812 22866 15355 21024 22245 20386 19335 15269 4997.6 1 1 1 1 1 1 1 1 1 1 3960 2053 3497 3714 4398 4398 3715 RSSLLNAK 8 Phospho (STY) _RSS(ph)LLNAK_ RS(0.013)S(0.987)LLNAK RS(-18.79)S(18.79)LLNAK 0 0 1 1 Q8TEU7 Q8TEU7 Q8TEU7 RAPGEF6 Rap guanine nucleotide exchange factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.914428710938 2 484.749874 967.485195 37634.583427422 2.0029 0.00097089 472750 229.16 472750 229.16 713.913049315733 47.819 0.40738 47.819 47.6 48.008 7.1054E-15 30 13 3 0.740916340763776 0.00174651092339347 0.0752845632142548 0.012681 1 11078 83.652 60.877 2 25819000 36056 20971 35020 24008 29646 34016 29833 31614 19932 10793 34114 19828 35258 24626 30395 33640 30088 32129 20087 10895 1 1 1 1 1 1 1 1 1 1 3961 1555 3498 3715 4399 4399 2856 RSSLLSLMTGK 11 Phospho (STY) _RS(ph)SLLSLMTGK_ RS(0.5)S(0.5)LLSLMTGK RS(0)S(0)LLS(-68.79)LMT(-153.34)GK 0 0 1 1 Q6WKZ4 Q6WKZ4 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.993957519531 3 424.884234 1271.63087 41380.8289336989 2.1298 0.00090493 359570 152.77 359570 152.78 577.659208361401 89.972 1.0993 89.972 89.605 90.705 0 119 37 5 0.945080125136822 0.00731746718993122 0.117197465012955 4.4855E-10 1 20929 176.25 140.29 4 94681000 12347 5938.9 12693 5878.2 7332.7 11785 7951 9685.2 6900.6 3793.5 11685 5609.9 12697 6134.2 7765.5 11530 8035 9910.7 6853.3 3796.2 1 1 1 1 1 1 1 1 1 1 3962 1286 3499 3716 4400 4400 2290;2291 RSSLPNGEGLQLK 13 Phospho (STY) _RS(ph)SLPNGEGLQLK_ RS(0.5)S(0.5)LPNGEGLQLK RS(0)S(0)LPNGEGLQLK 0 0 1 1 Q9ULR3 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.35791015625 3 493.583612 1477.72901 39389.0161355855 2.5331 0.0012503 309520 152.77 309520 152.78 646.358248414195 63.005 0.49539 63.005 62.79 63.285 0 56 16 5 0.795706314384939 0.00363826539030923 0.0323932287700605 0.00016019 1 14786 108.45 79.147 2 29532000 6914.8 12834 6210.3 13686 9246.4 5182.7 11204 7861 18335 3694.4 6540.5 12129 6334.8 13863 9238.4 5614.9 11506 7892.7 17788 3660.6 1 1 1 1 1 1 1 1 1 1 3963 2189 3500 3717 4401 4401 3960;3961 RSSLSSR 7 Phospho (STY) _RS(ph)SLSSR_ RS(0.62)S(0.379)LS(0.001)SR RS(2.14)S(-2.14)LS(-28.8)S(-41.07)R 0 0 1 1 Q8WUM0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.286560058594 2 436.702924 871.391295 40080.1181052638 1.9288 0.00084229 262380 114.58 262380 114.58 551.285822367237 22.241 0.26077 22.241 22.111 22.371 0 15 8 3 0.789124329824812 0.00386898104197028 0.0925476047522879 0.055544 1 5016 51.445 7.1277 4 5268300 4563.8 3660.8 3906.8 3321.3 3775.9 4323.3 3632.9 4280.5 3951.2 3852.1 4316.1 3456.3 3969.8 3447.1 3837.8 4295.4 3713.6 4411.4 3885.2 3726.3 1 1 1 1 1 1 1 1 1 1 3964 1565 3501 3718 4402 4402 2878 RSSNVSYK 8 Phospho (STY) _RSS(ph)NVSYK_ RS(0.007)S(0.993)NVSYK RS(-21.67)S(21.67)NVS(-33.77)Y(-56.19)K 0 0 1 1 P11717 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.892700195313 2 510.729139 1019.44372 37218.6593207933 2.0938 0.0010694 448700 229.16 448700 229.16 739.891289493597 33.456 0.33895 33.456 33.309 33.648 0 18 11 2 0.96931494636305 0.000644044256606816 0.00411968885436284 0.0080742 1 7504 91.123 51.206 4 15230000 23188 12365 23888 13120 8903.9 25849 8476.3 15721 14313 5490.9 21944 11685 23830 13629 9919.9 25225 8808.5 16327 13875 5534.2 1 1 1 1 1 1 1 1 1 1 3965 365 3502 3719 4403 4403 598 RSSPAAFINPPIGTVTPALK 20 Phospho (STY) _RS(ph)SPAAFINPPIGTVTPALK_ RS(0.623)S(0.377)PAAFINPPIGTVTPALK RS(2.17)S(-2.17)PAAFINPPIGT(-116.83)VT(-143.71)PALK 0 0 1 1 Q9BY77 Q9BY77 Q9BY77 POLDIP3 Polymerase delta-interacting protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 859.487731933594 3 706.376673 2116.10819 33951.44878098 1.9547 0.0013807 216280 152.78 216280 152.78 859.486393982153 88.857 0.83752 88.857 88.396 89.233 0 107 28 5 0.990163029304744 0.00995509622870415 0.405791026524181 2.7751E-08 1 20683 170.53 152.83 4 64658000 6654 13771 7039.4 12781 21406 6985.7 23640 14431 13210 19084 6297.8 13004 7246.2 13091 20896 7390.1 23670 14761 13477 18304 1 1 1 1 1 1 1 1 1 1 3966 1870 3503 3720 4404 4404 3405 RSSPPPPPSGSSSR 14 Phospho (STY) _RS(ph)SPPPPPSGSSSR_ RS(0.5)S(0.5)PPPPPSGSSSR RS(0)S(0)PPPPPS(-43.72)GS(-43.72)S(-43.72)S(-43.72)R 0 0 1 1 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 569.281372070313 3 492.559467 1474.65657 41599.4020198055 1.6545 0.00081495 155080 76.387 155080 76.388 569.28015137002 24.375 0.86836 24.375 23.845 24.713 -3.5527E-15 70 29 4 0.967905656480833 0.00284443943661874 0.0396560858078242 0.036823 1 5410 51.971 41.337 6 8785000 1752 1775.4 1816.7 2143 1761.8 2742.9 1950.1 1987 1869.7 1450.3 1658 1679.3 1825.3 2187.6 1793.7 2715.8 1973.8 2066.1 1848.2 1411.6 1 1 1 1 1 1 1 1 1 1 3967 1204 3504 3721 4405 4405 2117;2118 RSSPSARPPDVPGQQPQAAK 20 Phospho (STY) _RSS(ph)PSARPPDVPGQQPQAAK_ RS(0.145)S(0.817)PS(0.038)ARPPDVPGQQPQAAK RS(-7.5)S(7.5)PS(-13.3)ARPPDVPGQQPQAAK 0 0 1 2 Q96JP5 Q96JP5 Q96JP5 ZFP91 E3 ubiquitin-protein ligase ZFP91 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.796630859375 3 718.68657 2153.03788 34321.3097896757 1.9961 0.0014345 212580 152.77 212580 152.78 871.795690784013 38.009 0.47066 38.009 37.799 38.27 0 44 15 4 0.965322592893532 0.00208395148119257 0.0178674556582991 2.2484E-07 1 8614 143.9 128.31 3 14848000 12777 10965 13628 13242 8521.4 13959 10218 12065 12978 5141.4 12094 10371 13615 13469 8975.7 13946 10395 12330 12689 5120.5 1 1 1 1 1 1 1 1 1 1 3968 1702 3505 3722 4406 4406 3137 RSSRSSPELTR 11 2 Phospho (STY) _RSS(ph)RS(ph)SPELTR_ RS(0.481)S(0.539)RS(0.517)S(0.46)PELT(0.003)R RS(-0.52)S(0.52)RS(0.52)S(-0.52)PELT(-21.87)R 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 555.596618652344 3 479.207867 1434.60177 40751.1223472376 1.1516 0.00055187 159410 76.39 159410 76.39 555.595689112419 25.519 0.98123 25.519 25.064 26.045 0 72 33 3 0.885784902397368 0.00426270172842095 0.069070899600657 0.037356 1 5673 50.079 36.173 10 9317000 6374.9 5844.6 5364.8 5708.1 4044.9 5846.9 5925.1 5270.6 5150.6 2272.8 6028.5 5520.4 5447.5 5871.5 4208.5 5851.5 5919.7 5377.6 5114.9 2262.1 1 1 1 1 1 1 1 1 1 1 3969 2226 3506 3723 4407 4407 4070;4071;4072 RSSSDEQGLSYSSLK 15 Phospho (STY) _RSS(ph)SDEQGLSYSSLK_ RS(0.31)S(0.345)S(0.345)DEQGLSYSSLK RS(-0.46)S(0)S(0)DEQGLS(-86.39)Y(-122.09)S(-128.45)S(-146.9)LK 0 0 1 1 Q9NPH3 Q9NPH3 Q9NPH3 IL1RAP Interleukin-1 receptor accessory protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.03369140625 3 575.256001 1722.74617 36211.6661989284 1.5544 0.00089416 265580 152.78 265580 152.78 728.365903573406 57.886 0.74816 57.886 57.422 58.17 7.1054E-15 71 25 4 0.810870234984143 0.00145782515477854 0.0404654872827435 2.003E-10 2 13506 180.16 120.44 7 31083000 52901 33021 54470 28854 50125 52012 45788 39883 29836 29497 50064 31170 54697 30253 51047 51004 46380 41365 30116 28698 2 2 2 2 2 2 2 2 2 2 3970 1997 3507 3724 4408;4409 4408 3622;3623 RSSSEGLSK 9 Phospho (STY) _RSS(ph)SEGLSK_ RS(0.003)S(0.99)S(0.007)EGLSK RS(-25.23)S(21.42)S(-21.42)EGLS(-105.69)K 0 0 1 1 Q86V48 Q86V48 Q86V48 LUZP1 Leucine zipper protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 496.931854248047 3 344.157011 1029.4492 43870.7480237406 0.80982 0.00027871 443910 152.78 443910 152.78 496.932410585856 33.556 0.51378 33.556 33.361 33.875 0 46 17 3 0.980290491293834 0.004118127315695 0.0141019245734213 3.3461E-06 1 7502 155.81 97.412 4 51151000 17302 14153 17495 12486 29300 15858 34800 20477 14630 1487.9 16373 13360 17760 12976 29096 15805 34607 20405 15291 1874.9 1 1 1 1 1 1 1 1 1 1 3971 1376 3508 3725 4410 4410 2492 RSSSFGNFDR 10 Phospho (STY) _RSSS(ph)FGNFDR_ RS(0.026)S(0.026)S(0.947)FGNFDR RS(-15.54)S(-15.54)S(15.54)FGNFDR 0 0 1 1 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 494.896911621094 3 418.175065 1251.50336 44735.1670402495 0.38734 0.00016197 182670 76.388 182670 76.388 494.562872443845 45.656 0.70175 45.656 45.407 46.109 0 86 23 5 0.976576842733445 0.00183848507390555 0.00369543809660983 0.017954 1 10484 61.082 39.209 3 141260000 8306.1 13590 9019 13567 18712 9527.6 20399 13515 16164 1325.9 7862.4 12838 9162.5 13867 18436 9782.8 20568 13442 16129 1561.2 1 1 1 1 1 1 1 1 1 1 3972 2028 3509 3726 4411 4411 3687 RSSSLKER 8 Phospho (STY) _RSSS(ph)LKER_ RS(0.015)S(0.048)S(0.937)LKER RS(-17.91)S(-12.94)S(12.94)LKER 0 0 1 2 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 500.950073242188 3 348.172884 1041.49682 44125.1077823662 0.73092 0.00025449 438790 152.78 438790 152.78 500.948482547773 25.747 0.31357 25.747 25.559 25.873 -3.5527E-15 32 10 4 0.833157581540361 0.00930846476840336 0.093530418025338 0.053883 1 5726 47.712 26.771 3 63620000 11833 18119 13206 18109 26412 11687 28809 19707 17268 4570.3 11202 17116 13385 18491 26046 12111 28894 19594 17528 4759.5 1 1 1 1 1 1 1 1 1 1 3973 2144 3510 3727 4412 4412 3861 RSSVVFADEK 10 Phospho (STY) _RS(ph)SVVFADEK_ RS(0.611)S(0.389)VVFADEK RS(1.97)S(-1.97)VVFADEK 0 0 1 1 Q92608 Q92608 Q92608 DOCK2 Dedicator of cytokinesis protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.299499511719 3 406.523582 1216.54892 41640.9913846304 0.96728 0.00039322 375810 152.78 375810 152.78 559.299252683149 53.268 0.58145 53.268 53.043 53.625 0 49 19 4 0.547942981761245 0.00162243421497064 0.00981152345740079 0.00030306 1 12395 102.38 53.01 2 42916000 37628 24619 41542 22809 41362 39726 43022 37028 22694 2784.7 35620 23246 41606 23802 41989 39036 43156 37330 23254 3479.1 1 1 1 1 1 1 1 1 1 1 3974 1605 3511 3728 4413 4413 2950;2951 RSTSPIIGSPPVR 13 Phospho (STY) _RST(ph)SPIIGSPPVR_ RS(0.086)T(0.457)S(0.457)PIIGSPPVR RS(-7.28)T(0)S(0)PIIGS(-52.94)PPVR 0 0 1 1 Q86TB9 Q86TB9 Q86TB9 PATL1 Protein PAT1 homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.30859375 3 482.920336 1445.73918 42044.3217149106 1.4926 0.00072081 158180 76.387 158180 76.388 559.307770760496 49.166 0.62833 49.166 48.853 49.481 0 84 21 5 0.990156518744624 0.0137661537824076 0.177946863098951 0.00031005 1 11388 119.05 98.921 4 130600000 12357 12468 13803 11393 10294 13003 9751.7 12961 13932 3523.6 11698 11772 13772 11790 10650 12968 10067 13109 13569 3617.9 1 1 1 1 1 1 1 1 1 1 3975 1361 3512 3729 4414 4414 2471;4643 RSYSPDGK 8 Phospho (STY) _RSYS(ph)PDGK_ RS(0.002)YS(0.998)PDGK RS(-26.96)Y(-48.61)S(26.96)PDGK 0 0 1 1 P43243 P43243 P43243 MATR3 Matrin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 483.25 3 330.474452 988.401525 44275.0700116325 0.89846 0.00029692 462290 152.78 462290 152.78 483.250425279185 32.246 0.61665 32.246 31.883 32.5 0 53 20 4 0.919725018972363 0.00261658326520227 0.0549787160430158 0.0033237 1 7190 95.498 66.412 3 23189000 16473 15949 16751 15835 14512 18001 16103 15825 16931 2490.5 15588 15066 16827 16301 14882 17924 16338 16033 16671 2711.4 1 1 1 1 1 1 1 1 1 1 3976 595 3513 3730 4415 4415 970 RSYSSPDITQAIQEEEKR 18 Phospho (STY) _RSYS(ph)SPDITQAIQEEEKR_ RS(0.047)YS(0.896)S(0.057)PDITQAIQEEEKR RS(-12.77)Y(-67.21)S(11.98)S(-11.98)PDIT(-83.71)QAIQEEEKR 0 0 1 2 P40818 P40818 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.843139648438 4 555.01004 2216.01106 38345.9900942022 1.1447 0.00063533 206450 114.58 206450 114.58 669.842693552091 65.693 0.47334 65.693 65.483 65.957 0 52 15 4 0.92999547974204 0.00315047122080762 0.0340370115232706 6.3159E-11 1 15436 186.96 159.91 5 12497000 4910.6 5443.3 5287.3 5507.1 3718.8 5058.5 3491.1 4974.2 4660.7 3937.5 4648.1 5142.5 5282.7 5643.4 3864.4 5096.8 3596.6 5111.4 4549.1 3822.8 1 1 1 1 1 1 1 1 1 1 3977 572 3514 3731 4416 4416 921;922 RTASPPALPK 10 Phospho (STY) _RT(ph)ASPPALPK_ RT(0.507)AS(0.493)PPALPK RT(0.12)AS(-0.12)PPALPK 0 0 1 1 Q13029 Q13029 Q13029 PRDM2 PR domain zinc finger protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 525.973205566406 3 373.19703 1116.56926 44029.7830531453 0.92507 0.00034523 409370 152.78 409370 152.78 525.972412934514 50.144 1.0455 50.144 49.572 50.618 7.1054E-15 75 35 3 0.977805896630419 0.00086731991274451 0.00992150296791594 0.019966 1 11639 83.204 47.244 2 11453000 8765.1 9668.7 8557 10017 9259.9 8714.5 9158.5 8562.2 10081 1564.3 8293.3 9135.6 8636.8 10243 9354.9 8794.2 9352.7 8641.6 9908.3 1671.1 1 1 1 1 1 1 1 1 1 1 3978 918 3515 3732 4417 4417 1514;4524 RTASPPPPPK 10 Phospho (STY) _RT(ph)ASPPPPPK_ RT(0.609)AS(0.391)PPPPPK RT(1.92)AS(-1.92)PPPPPK 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.299438476563 3 376.525146 1126.55361 43143.7629159368 0.42336 0.0001594 405750 152.78 405750 152.78 529.30056334438 34.32 1.1284 34.32 33.618 34.746 0 84 38 4 0.847670305873599 0.000946957610864266 0.00599452118157704 0.030181 1 7659 73.466 53.854 2 29734000 12598 10861 11271 11552 13540 13717 13136 13938 12211 1964.1 11916 10264 11452 11854 13599 13659 13365 14031 12088 2172 1 1 1 1 1 1 1 1 1 1 3979 1436 3516 3733 4418 4418 2655;4661 RTDALTSSPGR 11 Phospho (STY) _RTDALTSS(ph)PGR_ RTDALT(0.001)S(0.007)S(0.992)PGR RT(-94.81)DALT(-28.92)S(-21.6)S(21.6)PGR 0 0 1 1 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 490.582641601563 3 414.194236 1239.56088 44343.2518195285 1.0338 0.00042818 184420 76.387 184430 76.388 490.582091546029 29.766 2.8081 29.766 28.866 31.674 0 201 94 5 0.964485417191553 0.00701770960260396 0.0655273331106909 6.0029E-07 1 6599 153.08 99.828 4 627520000 14532 9891.2 13006 11392 14549 13932 14902 13517 11021 2198.7 13745 9352.4 13203 11646 14675 13850 15046 13640 11039 2383.2 1 1 1 1 1 1 1 1 1 1 3980 647 3517 3734 4419 4419 1073 RTGSNISGASSDISLDEQYK 20 2 Phospho (STY) _RT(ph)GSNIS(ph)GASSDISLDEQYK_ RT(0.5)GS(0.5)NIS(0.523)GAS(0.214)S(0.261)DIS(0.001)LDEQYK RT(0)GS(0)NIS(3.02)GAS(-3.88)S(-3.02)DIS(-26.05)LDEQY(-79.72)K 0 0 2 1 P22059 P22059 P22059 OSBP Oxysterol-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 916.431091308594 3 763.320832 2286.94067 32884.9798068209 1.7938 0.0013692 200150 152.78 200150 152.78 916.43036512776 64.97 0.91941 64.97 64.564 65.483 0 95 31 4 0.982521797521843 0.0024031243661662 0.0175555310538045 7.7581E-06 1 15235 135.3 103.04 21 19620000 6116 7544.8 6254.1 7252.2 6643 6423.3 6697.3 8261.4 7953.2 35161 5787.8 7125.6 6294.4 7450.9 6720.3 6564.7 6849 9275.1 7794.1 33300 1 1 1 1 1 1 1 1 1 1 3981 454 3518 3735 4420 4420 742;743;4423 RTLSMDK 7 Phospho (STY) _RTLS(ph)MDK_ RT(0.018)LS(0.982)MDK RT(-17.29)LS(17.29)MDK 0 0 1 1 P17858 P17858 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 463.584259033203 3 310.808666 929.404168 46210.0116352886 0.98225 0.00030529 491540 152.78 491540 152.78 463.583874443869 45.894 0.55639 45.894 45.614 46.17 0 47 18 3 0.950643112563492 0.00248833700354257 0.0275971098825692 0.015614 1 10565 66.758 34.54 2 24228000 25660 22137 26992 22930 38164 26080 38608 30564 25075 2862.6 24286 20917 27240 23546 38063 26063 38908 30571 25315 3402.8 1 1 1 1 1 1 1 1 1 1 3982 422 3519 3736 4421 4421 681 RTLSMDKGF 9 Phospho (STY) _RTLS(ph)MDKGF_ RT(0.102)LS(0.898)MDKGF RT(-9.45)LS(9.45)MDKGF 0 0 1 2 P17858 P17858 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.614196777344 3 378.838625 1133.49405 42862.2457571123 1.2014 0.00045512 403270 152.78 403270 152.78 531.613878405022 65.377 0.81369 65.377 65.054 65.867 0 84 27 4 0.990488232257047 0.00473853923333997 0.162179595481122 0.00012876 1 15335 131.79 100.97 2 34098000 9521.4 9206.9 10246 7737.7 22345 10117 22789 15786 8530.6 1700.3 9012.4 8689.1 10424 8072.7 21954 10109 22786 15666 9021.9 1966.4 1 1 1 1 1 1 1 1 1 1 3983 422 3520 3737 4422 4422 681 RTNPPGGKGSGIFDESTPVQTR 22 Phospho (STY) _RT(ph)NPPGGKGSGIFDESTPVQTR_ RT(0.567)NPPGGKGS(0.433)GIFDESTPVQTR RT(1.16)NPPGGKGS(-1.16)GIFDES(-51.7)T(-51.93)PVQT(-71.85)R 0 0 1 2 Q9H910 Q9H910 Q9H910 HN1L Hematological and neurological expressed 1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.869812011719 4 596.036589 2380.11725 38164.0241139768 1.5212 0.00090667 192240 114.58 192240 114.58 710.618725725189 55.944 0.71373 55.944 55.683 56.397 7.1054E-15 91 23 6 0.821686196811789 0.00182888615115448 0.0216764591816948 4.9325E-05 1 13094 117.73 96.331 5 35021000 9805.4 17455 10380 18194 11358 12427 12014 12966 14469 5966.1 9280.6 16493 10432 18544 11480 12732 12265 13165 14172 5917.9 1 1 1 1 1 1 1 1 1 1 3984 1965 3521 3738 4423 4423 3577;4772 RTNSTGGSSGSSVGGGSGK 19 Phospho (STY) _RTNS(ph)TGGSSGSSVGGGSGK_ RT(0.334)NS(0.61)T(0.056)GGSSGSSVGGGSGK RT(-2.61)NS(2.61)T(-10.39)GGS(-36.02)S(-65.66)GS(-79.01)S(-95.06)VGGGS(-162.51)GK 0 0 1 1 Q8IUD2 Q8IUD2 Q8IUD2 ERC1 ELKS/Rab6-interacting/CAST family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.025207519531 3 573.914638 1718.72208 36467.1458271054 1.9899 0.001142 266200 152.78 266200 152.78 727.024001049839 26.208 0.58391 26.208 25.958 26.542 0 54 19 5 0.953779503195167 0.00767001920434869 0.12793465553553 5.711E-11 1 5841 186.24 171.08 8 21138000 11581 6377.3 12460 7047.4 11431 14079 13321 12694 8500.8 5597.8 10962 6028.2 12487 7308.1 11683 13791 13336 12955 8592.2 5564.8 1 1 1 1 1 1 1 1 1 1 3985 1408 3522 3739 4424 4424 2564 RTPDYFL 7 Phospho (STY) _RT(ph)PDYFL_ RT(1)PDYFL RT(43.23)PDY(-43.23)FL 0 0 1 1 P67775;P62714 P67775 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.800537109375 2 496.217875 990.421198 41765.1654814038 1.502 0.00074531 230910 114.58 230910 114.58 610.799380968144 80.346 0.56341 80.346 80.132 80.695 0 32 18 2 0.985319319086948 0.000850463709896277 0.0138033533066221 0.033607 1 18802 72.607 61.734 2 8495600 5730.9 6189.5 6351.3 6675.7 7302.5 7105.4 7858 7042.6 7955.4 9684.4 5425.2 5849.8 6372.4 6831.6 7362.4 7120.4 7974.7 7358.5 7845.4 9282 1 1 1 1 1 1 1 1 1 1 3986 765 3523 3740 4425 4425 4492 RTPSDDEEDNLFAPPK 16 Phospho (STY) _RTPS(ph)DDEEDNLFAPPK_ RT(0.085)PS(0.915)DDEEDNLFAPPK RT(-10.3)PS(10.3)DDEEDNLFAPPK 0 0 1 1 Q9Y4E1;Q641Q2 Q9Y4E1 Q9Y4E1 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.387329101563 3 637.610444 1909.8095 35107.1835161499 2.0127 0.0012833 239610 152.78 239610 152.78 790.385969093772 69.258 1.5392 69.258 68.794 70.333 1.4211E-14 165 52 4 0.917823600152256 0.00140135506079128 0.017915963000479 1.3282E-10 2 16221 186.06 164.51 2 21098000 23189 13544 22489 12053 15057 23213 16127 19057 13301 26537 21940 12786 22596 12646 15731 22767 16287 20076 13244 25429 2 2 2 2 2 2 2 2 2 2 3987 1221 3524 3741 4426;4427 4426 2149 RTPSEADRWLEEVSK 15 Phospho (STY) _RTPS(ph)EADRWLEEVSK_ RT(0.04)PS(0.96)EADRWLEEVSK RT(-13.77)PS(13.77)EADRWLEEVS(-103.72)K 0 0 1 2 P49757 P49757 P49757 NUMB Protein numb homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 781.07177734375 3 628.294679 1881.86221 34863.8132428597 1.9179 0.001205 243160 152.78 243160 152.78 781.404647301067 77.116 0.74788 77.116 76.884 77.632 0 82 25 5 0.922596108960666 0.00217117702499929 0.0114502484924028 1.3609E-05 1 18060 136.96 121.33 3 26310000 8393.2 11417 9246.2 10141 7192.5 6878.9 7981.4 9132.1 10862 12622 7945.3 10778 9237.7 10438 7434.1 7092.7 8165.4 9453.1 10596 12096 1 1 1 1 1 1 1 1 1 1 3988 651 3525 3742 4428 4428 1080 RTPSVGK 7 Phospho (STY) _RTPS(ph)VGK_ RT(0.426)PS(0.574)VGK RT(-1.3)PS(1.3)VGK 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 428.2470703125 3 275.472382 823.395318 48973.593218676 -0.87872 -0.00024206 554590 152.78 554590 152.78 428.247618537674 34.311 0.44289 34.311 34.077 34.52 0 31 14 3 0.623631200497355 0.000991541606512367 0.00576298613312781 0.04397 1 7676 44.57 24.808 2 18423000 29190 17806 28705 17736 14767 28354 14185 19328 17527 3270.9 27620 16821 28760 18386 15804 27839 14559 19836 17153 3527.3 1 1 1 1 1 1 1 1 1 1 3989 603 3526 3743 4429 4429 992 RTPTMPQEEAAACPPHILPPEK 22 Phospho (STY) _RT(ph)PTMPQEEAAACPPHILPPEK_ RT(0.991)PT(0.009)MPQEEAAACPPHILPPEK RT(20.39)PT(-20.39)MPQEEAAACPPHILPPEK 0 0 1 1 Q9NYV4 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.135864257813 4 638.302471 2549.18078 35919.2242187749 1.4362 0.00091672 179510 114.58 179510 114.58 753.1351522951 65.972 1.5785 65.972 65.372 66.95 0 157 53 5 0.953402814735823 0.00213732427521909 0.0237000625280938 1.5471E-08 1 15426 166.28 126.43 2 17073000 6901 6883 7239.3 6389.4 5665.8 7022.5 5805.3 6504.4 7498.2 7692.2 6531.4 6499.3 7251.1 6600.7 5846.2 7018.8 5949 6776.2 7326.7 7393.7 1 1 1 1 1 1 1 1 1 1 3990 2077 3527 3744 4430 4430 4791 RTQAPTKASE 10 Phospho (STY) _RTQAPTKAS(ph)E_ RTQAPT(0.001)KAS(0.999)E RT(-69.11)QAPT(-29.61)KAS(29.61)E 0 0 1 2 P47914 P47914 P47914 RPL29 60S ribosomal protein L29 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.960083007813 3 390.183449 1167.52852 42164.1466104257 1.9171 0.00074801 391550 152.78 391550 152.78 542.958578261545 28.049 0.37041 28.049 27.866 28.236 0 40 12 4 0.992526265882983 0.00697543223522849 0.0876379238723672 0.012699 1 6233 76.311 57.531 3 49103000 14366 9946.1 16215 11038 7856.2 13802 7782.4 12433 11612 1979.8 13601 9401.9 16118 11311 8468.6 13698 8030.2 12584 11295 2152 1 1 1 1 1 1 1 1 1 1 3991 622 3528 3745 4431 4431 1022 RTQSLSALPK 10 Phospho (STY) _RTQS(ph)LSALPK_ RT(0.334)QS(0.656)LS(0.01)ALPK RT(-2.94)QS(2.94)LS(-18.06)ALPK 0 0 1 1 Q96RK0 Q96RK0 Q96RK0 CIC Protein capicua homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 546.984741210938 3 394.207706 1179.60129 42459.6429263957 2.0639 0.0008136 387550 152.78 387550 152.78 546.983324014787 53.732 0.44169 53.732 53.503 53.945 0 38 14 3 0.71695368965809 0.000967891563635876 0.0105255043517715 0.00022279 1 12545 112.08 64.796 3 16999000 14182 9817.7 15819 10889 9915.5 14945 8367.6 10214 12766 2571.6 13426 9280.5 15759 11180 10393 14744 8712.3 10506 12409 2657.9 1 1 1 1 1 1 1 1 1 1 3992 1737 3529 3746 4432 4432 3188 RTSDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK 35 Oxidation (M),Phospho (STY) _RT(ph)SDPSAAVNHVSSTTSLGENYEDDDLVNSDEVM(ox)K_ RTSDPSAAVNHVSSTTSLGENYEDDDLVNSDEVM(1)K RT(0.847)S(0.144)DPS(0.009)AAVNHVSSTTSLGENYEDDDLVNSDEVMK RTSDPSAAVNHVSSTTSLGENYEDDDLVNSDEVM(195.35)K RT(7.69)S(-7.69)DPS(-19.87)AAVNHVS(-62.93)S(-60.34)T(-59.03)T(-59.03)S(-84.21)LGENY(-132.4)EDDDLVNS(-182.3)DEVMK 0 1 1 1 Q8NHH9 Q8NHH9 Q8NHH9 ATL2 Atlastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1085.75341796875 4 970.419109 3877.64733 29984.1587062224 1.5909 0.0015439 118070 114.58 118070 114.58 1085.24999581924 66.709 0.6039 66.709 66.516 67.119 0 77 20 6 0.970879565560554 0.00462720655896608 0.0834176420506975 1.7581E-12 1 15668 195.35 179.48 10 34256000 795.24 1442 476.78 1376.1 2317 686.76 1529.1 1920.7 1726.5 43534 751.31 1361.9 519.45 1405.9 2231.7 816.6 1599.7 3190.6 1695.1 41037 1 1 1 1 1 1 1 1 1 1 3993 1526 3530 3747 4433 4433 181 4695 RTSEEDTPK 9 Phospho (STY) _RT(ph)SEEDTPK_ RT(0.705)S(0.295)EEDTPK RT(3.79)S(-3.79)EEDT(-78.49)PK 0 0 1 1 Q8WYH8 Q8WYH8 Q8WYH8 ING5 Inhibitor of growth protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 534.269592285156 3 381.495692 1141.46525 42084.8188497473 1.6375 0.00062472 400460 152.77 400460 152.78 534.270127414925 28.565 0.54513 28.565 28.321 28.866 0 56 18 4 0.785561516494017 0.00502492886416988 0.0504028294017798 0.00098455 1 6342 112.82 75.804 3 27965000 14758 13738 14071 15468 13835 14686 15191 14119 15797 2555.7 13963 12988 14208 15764 14074 14753 15415 14261 15562 2733.2 1 1 1 1 1 1 1 1 1 1 3994 1584 3531 3748 4434 4434 4707 RTSFSFQK 8 Phospho (STY) _RT(ph)SFSFQK_ RT(0.648)S(0.352)FSFQK RT(2.65)S(-2.65)FS(-35.04)FQK 0 0 1 1 Q9BPZ7 Q9BPZ7 Q9BPZ7 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.609375 3 360.83398 1079.48011 43856.126717194 1.087 0.00039224 423390 152.77 423400 152.78 513.608967277924 60.37 0.77977 60.37 60.023 60.803 0 83 26 5 0.806394184518148 0.0177482533517006 0.276479088229379 0.0013888 1 14149 123.2 82.767 3 94601000 46113 51748 47508 45643 81665 46718 97871 72049 54439 4541.5 43640 48850 48207 47255 81045 47106 97657 71426 55557 5943.8 1 1 1 1 1 1 1 1 1 1 3995 1800 3532 3749 4435 4435 4749 RTSFYLPK 8 Phospho (STY) _RT(ph)SFYLPK_ RT(0.5)S(0.5)FYLPK RT(0)S(0)FY(-47.18)LPK 0 0 1 1 Q9NS23 Q9NS23 Q9NS23 RASSF1 Ras association domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 517.28759765625 3 364.514359 1090.52125 43506.3441960951 1.5338 0.00055909 419120 152.77 419120 152.78 517.289062872084 68.537 0.51982 68.537 68.243 68.763 0 51 17 4 0.970346311515493 0.00217164449583471 0.026418080164288 0.019299 1 16064 87.184 49.189 3 20917000 5901.6 6402.3 6766.4 8136 14776 6408 17259 11270 7295.8 1909.1 5587.6 6057.9 6866.4 8220.2 14548 6564.7 17176 11174 7621.3 2058.4 1 1 1 1 1 1 1 1 1 1 3996 2022 3533 3750 4436 4436 3674;4778 RTSIHDFLTK 10 Phospho (STY) _RTS(ph)IHDFLTK_ RT(0.173)S(0.827)IHDFLTK RT(-6.8)S(6.8)IHDFLT(-58.96)K 0 0 1 1 Q3V6T2 Q3V6T2 Q3V6T2 CCDC88A Girdin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.991638183594 3 433.21486 1296.62275 41764.9710501483 1.5358 0.00066535 352650 152.78 352660 152.78 585.990286492627 65.569 0.76464 65.569 65.284 66.049 0 52 25 3 0.568489431517526 0.00110353695361321 0.038675386464376 0.0059086 1 15369 85.493 59.963 3 10572000 6299.1 7541.8 8533.4 6030.4 10144 8027.2 10743 9837.9 7071.4 13890 5968.9 7115.8 8485 6316.2 10205 8005.8 10806 10216 7133.1 13307 1 1 1 1 1 1 1 1 1 1 3997 1131 3534 3751 4437 4437 1970 RTSLSAEDAEVTK 13 Phospho (STY) _RT(ph)SLSAEDAEVTK_ RT(0.837)S(0.16)LS(0.003)AEDAEVTK RT(7.2)S(-7.2)LS(-24.28)AEDAEVT(-158.41)K 0 0 1 1 Q9P2D1 Q9P2D1 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.342529296875 3 496.231016 1485.67122 38238.7050306442 2.3194 0.001151 307870 152.78 307870 152.78 649.006497646501 49.444 0.45902 49.444 49.199 49.658 0 38 15 3 0.929862615544237 0.00277454102753664 0.0160187358388332 3.5098E-10 1 11461 187.04 154.09 4 25867000 16254 10015 18028 10562 19897 18397 18344 15807 10807 7347.8 15387 9463.6 18071 10937 20052 18072 18541 16178 10983 7284.6 1 1 1 1 1 1 1 1 1 1 3998 2107 3535 3752 4438 4438 4794 RTSPQVLGSILK 12 Phospho (STY) _RT(ph)SPQVLGSILK_ RT(0.598)S(0.402)PQVLGSILK RT(1.73)S(-1.73)PQVLGS(-65)ILK 0 0 1 1 Q7Z417 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.029296875 3 460.253315 1377.73812 40222.7069346902 1.7831 0.00082066 331940 152.78 331940 152.78 613.028686199663 78.176 0.85426 78.176 77.809 78.664 0 113 29 5 0.989233633343286 0.00569076699421292 0.0746021692880868 8.0508E-07 1 18286 154.31 94.116 3 128060000 9984.1 11834 10908 11103 10440 10235 10412 11136 12999 4104.3 9451 11175 10925 11431 10624 10317 10670 11259 12716 4122.5 1 1 1 1 1 1 1 1 1 1 3999 1335 3536 3753 4439 4439 2410;4639 RTSPSSLPGR 10 Phospho (STY) _RTS(ph)PSSLPGR_ RT(0.093)S(0.897)PS(0.007)S(0.003)LPGR RT(-9.82)S(9.82)PS(-21.23)S(-24.41)LPGR 0 0 1 1 Q5SNT2 Q5SNT2 Q5SNT2 TMEM201 Transmembrane protein 201 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.857238769531 2 569.274245 1136.53394 38307.5048660145 1.8268 0.0010399 201280 114.58 201280 114.58 683.856081058473 30.704 0.35633 30.704 30.495 30.851 0 27 11 3 0.520806489181239 0.00161683748355579 0.0864946397854983 0.044453 1 6857 54.823 38.58 4 15164000 19538 14023 21114 13083 13864 21744 15002 17583 14637 4285.4 18494 13241 21084 13629 14513 21364 15206 17927 14457 4442.2 1 1 1 1 1 1 1 1 1 1 4000 1177 3537 3754 4440 4440 2039 RTSSLDTITGPYLTGQWPR 19 Phospho (STY) _RT(ph)SSLDTITGPYLTGQWPR_ RT(0.333)S(0.333)S(0.333)LDTITGPYLTGQWPR RT(0)S(0)S(0)LDT(-36.57)IT(-89.38)GPY(-134.22)LT(-152.36)GQWPR 0 0 1 1 Q86VQ1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 820.083801269531 3 743.694842 2228.0627 34622.2737923659 1.0509 0.00078152 102720 76.389 102720 76.389 820.418584363656 87.851 0.58138 87.851 87.587 88.168 0 42 19 3 0.972928526418732 0.00187881702747181 0.0268276576769953 2.093E-10 1 20493 179.92 151.42 7 10949000 5334.6 4532.5 5602.2 5263.3 3448.8 4521.3 3842.6 5306.9 4466.7 17444 5048.9 4285.8 5600.1 5347.6 3633.1 4607.7 3909.6 5818.4 4380.8 16549 1 1 1 1 1 1 1 1 1 1 4001 1382 3538 3755 4441 4441 2504;2505;4647 RTSSTLDSEGTFNSYR 16 Phospho (STY) _RTS(ph)STLDSEGTFNSYR_ RT(0.009)S(0.99)S(0.001)TLDSEGTFNSYR RT(-20.29)S(20.29)S(-30.07)T(-39.97)LDS(-68.03)EGT(-97.47)FNS(-136.23)Y(-201.15)R 0 0 1 1 Q92609 Q92609 Q92609 TBC1D5 TBC1 domain family member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1065.49206542969 2 950.907276 1899.8 30831.6374810446 1.0643 0.001012 120500 114.58 120500 114.58 1065.98980662461 52.031 0.37522 52.031 51.863 52.238 0 36 12 4 0.990869923048708 0.000592202343890466 0.0117601595607454 4.9373E-23 1 12097 280.38 252.29 8 22019000 4815 3514 4911.3 3269.4 7904.4 5342.7 8389 6951.2 3187.6 5405.5 4556.5 3318.2 4977.4 3405.2 7846.7 5293.1 8373.6 7073.1 3365.8 5250.8 1 1 1 1 1 1 1 1 1 1 4002 1606 3539 3756 4442 4442 2956;4712 RTSTPVIMEGVQEETDTR 18 Oxidation (M),Phospho (STY) _RT(ph)STPVIM(ox)EGVQEETDTR_ RTSTPVIM(1)EGVQEETDTR RT(0.488)S(0.488)T(0.025)PVIMEGVQEETDTR RTSTPVIM(137.9)EGVQEETDTR RT(0)S(0)T(-12.9)PVIMEGVQEET(-120.95)DT(-128.15)R 0 1 1 1 Q8NFC6 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.046508789063 3 715.655836 2143.94568 33933.7360625924 1.4734 0.0010545 106740 76.388 106740 76.389 792.378495749781 47.917 0.52469 47.917 47.541 48.066 -7.1054E-15 32 17 3 0.946193025903116 0.000817759225979425 0.0240475256810623 1.4823E-06 1 11088 137.9 118.84 5 13961000 8192 9594 8521 8863.9 10643 8841.2 10432 10299 9577 28839 7753 9058.9 8586.8 9145.3 10671 8935.6 10606 11143 9485.9 27394 1 1 1 1 1 1 1 1 1 1 4003 1521 3540 3757 4443 4443 179 2798;4691 RTSTPVIMEGVQEETDTR 18 Phospho (STY) _RT(ph)STPVIMEGVQEETDTR_ RT(0.415)S(0.415)T(0.169)PVIMEGVQEETDTR RT(0)S(0)T(-3.9)PVIMEGVQEET(-153.68)DT(-178.97)R 0 0 1 1 Q8NFC6 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.046569824219 3 710.324198 2127.95076 35127.8885621825 1.7589 0.0012494 107540 76.387 107540 76.389 787.045935778897 63.476 0.67378 63.476 63.165 63.839 7.1054E-15 92 22 6 0.897232226223197 0.0041739189082105 0.020716693504054 7.814E-11 1 14886 203.82 181.81 5 46463000 8620.8 8207.2 8700.8 10653 8959.2 9280.8 10024 8535.7 9290.5 14652 8157.8 7767 8761.7 10767 9091 9382.1 10132 9032.3 9198 13994 1 1 1 1 1 1 1 1 1 1 4004 1521 3540 3758 4444 4444 2798;4691 RVAFISLSPVR 11 Phospho (STY) _RVAFISLS(ph)PVR_ RVAFIS(0.004)LS(0.996)PVR RVAFIS(-23.58)LS(23.58)PVR 0 0 1 1 Q6ZU65 Q6ZU65 Q6ZU65 UBN2 Ubinuclein-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 518.630554199219 3 442.24275 1323.70642 43930.6660594174 0.94091 0.00041611 172730 76.388 172730 76.388 518.630344124563 81.381 0.69029 81.381 81.105 81.795 0 69 23 4 0.953078973977215 0.00329221825694759 0.12734182299671 3.4645E-07 1 19024 162.79 130.73 2 22211000 1317.6 3803.9 2036.9 3715.2 2208.2 2198.1 1506.5 2624.9 4800 2462.1 1249.5 3592.9 2010.4 3795.7 2223.9 2280.9 1657.4 2690.6 4596.5 2379.1 1 1 1 1 1 1 1 1 1 1 4005 1301 3541 3759 4445 4445 2322 RVESEESGDEEGKK 14 2 Phospho (STY) _RVES(ph)EES(ph)GDEEGKK_ RVES(1)EES(1)GDEEGKK RVES(64.7)EES(64.7)GDEEGKK 0 0 2 2 Q15435 Q15435 Q15435 PPP1R7 Protein phosphatase 1 regulatory subunit 7 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.388061523438 3 580.2238 1737.64957 NaN NaN NaN NaN NaN NaN NaN NaN 36.21 1 36.21 35.71 36.71 0 NaN NaN NaN 0.034388 1 8158 64.705 48.199 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4006 1077 3542 3760 4446 4446 1867;1868 RVHNNSPDTSRR 12 Phospho (STY) _RVHNNS(ph)PDTSRR_ RVHNNS(0.851)PDT(0.074)S(0.074)RR RVHNNS(10.59)PDT(-10.59)S(-10.59)RR 0 0 1 2 Q9BRD0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 437.970367431641 4 380.428489 1517.68485 47363.717853547 0.86126 0.00032765 150600 57.291 150600 57.291 437.719631683995 18.054 0.25331 18.054 17.899 18.152 0 17 9 2 0.853188185320435 0.00258471843175013 0.00910320188884648 0.036526 1 4144 47.037 25.406 3 1445000 0 393.18 300.61 255.67 316.2 486.69 588.51 502.43 328.95 2536.4 0 370.64 286.12 274.61 323.57 482.5 578.87 579.79 335.58 2400 0 1 1 1 1 1 1 1 1 1 4007 1810 3543 3761 4447 4447 3323 RVKSPSPK 8 2 Phospho (STY) _RVKS(ph)PS(ph)PK_ RVKS(1)PS(1)PK RVKS(67.02)PS(67.02)PK 0 0 2 2 O15042 O15042 O15042 U2SURP U2 snRNP-associated SURP motif-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.660766601563 3 353.49803 1057.47226 41354.1853695978 1.2734 0.00045013 648270 229.16 648270 229.16 582.660768150957 34.166 2.6785 34.166 33.467 36.145 0 146 91 2 0.823885556254496 0.00105514696429961 0.00657060014599569 0.014833 2 7782 67.022 25.482 1 59492000 34785 39098 33854 38227 40029 34606 39424 35939 39735 7614.3 32912 36930 34217 39245 40249 34880 40168 36227 39194 8001.5 2 2 2 2 2 2 2 2 2 2 4008 77 3544 3762 4448;4449 4449 137;138 RVLSAPPK 8 Phospho (STY) _RVLS(ph)APPK_ RVLS(1)APPK RVLS(65.24)APPK 0 0 1 1 Q86YV0 Q86YV0 Q86YV0 RASAL3 RAS protein activator like-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 469.28369140625 3 316.507315 946.500117 46235.8055740021 -0.45303 -0.00014339 482690 152.78 482690 152.78 469.283090900985 48.31 0.70374 48.31 47.976 48.68 0 62 23 4 0.932127935191206 0.00267612458964694 0.0239027653865123 0.014855 1 11180 65.241 33.81 1 27462000 27888 9272.5 26466 10725 26141 26060 28135 21436 9996.3 2118.4 26384 8767.7 26732 11170 26558 25382 28046 21745 10633 2490.9 1 1 1 1 1 1 1 1 1 1 4009 1404 3545 3763 4450 4450 2552 RVNDAEPGSPEAPQGK 16 Phospho (STY) _RVNDAEPGS(ph)PEAPQGK_ RVNDAEPGS(1)PEAPQGK RVNDAEPGS(136.68)PEAPQGK 0 0 1 1 Q8N8A6 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.038757324219 3 577.928107 1730.76249 35989.3058970322 1.0269 0.00059347 264350 152.78 264350 152.78 731.038278525588 37.191 0.34509 37.191 36.925 37.27 7.1054E-15 29 11 3 0.934136261905727 0.00408411457877082 0.0206104029568018 8.8667E-06 1 8390 136.68 107.05 1 42951000 18080 18678 17663 17148 32087 18650 39507 22947 20699 5516.1 17107 17636 18000 17724 31798 18691 39343 23017 21222 5725.2 1 1 1 1 1 1 1 1 1 1 4010 1486 3546 3764 4451 4451 2735 RVNSASSSNPPAEVDPDTILK 21 Phospho (STY) _RVNS(ph)ASSSNPPAEVDPDTILK_ RVNS(0.698)AS(0.025)S(0.039)S(0.238)NPPAEVDPDTILK RVNS(4.67)AS(-14.45)S(-12.55)S(-4.67)NPPAEVDPDT(-114.7)ILK 0 0 1 1 Q9BY77 Q9BY77 Q9BY77 POLDIP3 Polymerase delta-interacting protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.807373046875 3 759.6968 2276.06857 32481.4036514787 1.7227 0.0013088 201100 152.78 201100 152.78 912.807950330741 71.332 0.45924 71.332 71.146 71.605 0 34 15 3 0.98640143813832 0.00235364421595224 0.0405587837257677 1.0101E-07 1 16733 148.85 115.18 5 15081000 8060.3 8283.9 8129.5 8738.3 12288 8514.6 11903 10635 7962.6 19438 7627.4 7828.1 8232.1 8940.9 12215 8607.8 12027 11171 8023.8 18550 1 1 1 1 1 1 1 1 1 1 4011 1870 3547 3765 4452 4452 3406 RVNSGDTEVGSSLLR 15 Phospho (STY) _RVNS(ph)GDTEVGSSLLR_ RVNS(0.995)GDT(0.005)EVGSSLLR RVNS(22.82)GDT(-22.82)EVGS(-53.84)S(-57.99)LLR 0 0 1 1 O75592 O75592 O75592 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.657104492188 3 557.268352 1668.78323 39806.2792492018 1.7127 0.00095444 137080 76.388 137080 76.389 633.656046924097 57.378 0.54467 57.378 57.131 57.675 0 56 18 4 0.763702708872316 0.00203923541574815 0.037444582323838 0.0044254 1 13409 91.238 57.366 4 18528000 10379 8447.7 13072 11796 11742 12409 13539 11016 8405.4 8042.3 9831.6 7999.3 12995 11917 12015 12409 13554 11346 8511.3 7827.8 1 1 1 1 1 1 1 1 1 1 4012 194 3548 3766 4453 4453 340 RVPLSPLSLLAGPADAR 17 Phospho (STY) _RVPLS(ph)PLSLLAGPADAR_ RVPLS(1)PLSLLAGPADAR RVPLS(33.17)PLS(-33.17)LLAGPADAR 0 0 1 1 Q53ET0 Q53ET0 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.718383789063 3 604.995904 1811.96588 38318.4396575155 1.5301 0.0009257 126260 76.387 126260 76.388 681.717636885764 100.02 0.22302 100.02 99.947 100.17 0 13 7 3 0.900495328330309 0.0023630949901232 0.0373023485716443 1.7541E-05 1 23328 133.1 113.43 2 40961000 4407.4 4586 4516.6 6110.5 4365.5 4180 3800.2 5461 5450.5 12985 4170.9 4340.9 4538.8 6150 4432.6 4316.5 3940.6 5819.4 5308 12354 1 1 1 1 1 1 1 1 1 1 4013 1146 3549 3767 4454 4454 1993 RVPSPTPAPK 10 Phospho (STY) _RVPS(ph)PTPAPK_ RVPS(0.926)PT(0.074)PAPK RVPS(10.98)PT(-10.98)PAPK 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.972900390625 3 377.19703 1128.56926 42751.5999888925 0.72776 0.00027451 405030 152.78 405030 152.78 529.972589722306 40.699 0.87366 40.699 40.322 41.195 0 92 29 5 0.996816393481979 0.0212531362572128 0.32916526445338 0.00011999 1 9231 124.51 89.101 2 1044900000 56029 56246 55758 53986 34936 53597 41307 47040 55820 959.94 53017 53121 55918 55563 36786 53660 42139 47468 54462 1992.6 1 1 1 1 1 1 1 1 1 1 4014 2226 3550 3768 4455 4455 4073 RVQSLPSVPLSCAAYR 16 Phospho (STY) _RVQS(ph)LPSVPLSCAAYR_ RVQS(1)LPSVPLSCAAYR RVQS(33.75)LPS(-33.75)VPLS(-78.87)CAAY(-93.62)R 0 0 1 1 Q96AD5 Q96AD5 Q96AD5 PNPLA2 Patatin-like phospholipase domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.369384765625 3 628.644766 1882.91247 37125.7485845264 1.7834 0.0011211 121510 76.387 121510 76.389 705.366784108397 72.575 0.58516 72.575 72.281 72.867 0 72 19 5 0.905152818867544 0.00257709962307557 0.0217138302492941 4.0336E-05 1 16999 128.95 107.86 4 84227000 6934 6571.7 7185 6161 5432.9 6745.5 5048.5 6801.9 6526.4 7152.7 6562.3 6205.8 7198.2 6360.4 5612.7 6749.5 5197.8 7036.1 6377 6892.5 1 1 1 1 1 1 1 1 1 1 4015 1645 3551 3769 4456 4456 3039 RVSEVEEEKEPVPQPLPSDDTR 22 Phospho (STY) _RVS(ph)EVEEEKEPVPQPLPSDDTR_ RVS(1)EVEEEKEPVPQPLPSDDTR RVS(46.39)EVEEEKEPVPQPLPS(-46.39)DDT(-47.89)R 0 0 1 2 O43290 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.644348144531 4 654.810178 2615.21161 36121.9336452884 1.8732 0.0012266 174980 114.58 174990 114.58 769.642235154712 60.042 0.40114 60.042 59.822 60.223 0 35 13 4 0.146327891977081 0.000454387309336494 0.00678690134563884 0.03586 1 14100 50.581 34.458 3 7661300 12632 15924 13078 14658 11880 13953 15434 13886 15925 13886 11954 15036 13135 15116 12177 14042 15553 14350 15692 13397 1 1 1 1 1 1 1 1 1 1 4016 103 3552 3770 4457 4457 171 RVSGPDPK 8 Phospho (STY) _RVS(ph)GPDPK_ RVS(1)GPDPK RVS(74.7)GPDPK 0 0 1 1 P22314 P22314 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.258178710938 3 312.483058 934.427346 45527.1978162468 -0.28105 -8.7822E-05 488910 152.78 488910 152.78 465.258522682113 34.987 0.46634 34.987 34.803 35.269 0 43 15 3 0.934472300747485 0.00383743066078151 0.0781552879557408 0.011251 1 7841 74.698 44.444 1 47066000 27086 19872 29705 20599 36199 28361 40663 31200 19901 1610.8 25641 18777 29849 21231 36395 28119 40609 31235 20517 2238.9 1 1 1 1 1 1 1 1 1 1 4017 457 3553 3771 4458 4458 745 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 Oxidation (M),Phospho (STY) _RVS(ph)GPDPKPGSNCSPAQSVLSEVPSVPTNGM(ox)AK_ RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGM(1)AK RVS(0.904)GPDPKPGS(0.045)NCS(0.045)PAQS(0.005)VLSEVPSVPTNGMAK RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGM(108.55)AK RVS(12.99)GPDPKPGS(-12.99)NCS(-12.99)PAQS(-22.61)VLS(-54.26)EVPS(-82.05)VPT(-94.39)NGMAK 0 1 1 2 P22314 P22314 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1034.78295898438 4 862.407456 3445.60072 31139.0549638024 1.7399 0.0015005 199290 171.87 199300 171.87 1035.03203577499 75.494 0.50828 75.494 75.119 75.628 0 65 17 5 0.683716211948532 0.00271307361657405 0.0910689071216901 3.8595E-05 1 17718 108.55 89.17 7 12293000 3035.4 3969.3 3357.8 4066.1 5249.6 3404.2 5274 4426.4 3817.3 85719 2873.5 3750.2 3385.8 4158.4 5214.6 3616 5327.4 6983.2 3828.4 80817 1 1 1 1 1 1 1 1 1 1 4018 457 3554 3772 4459 4459 62 745;746 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 Phospho (STY) _RVS(ph)GPDPKPGSNCSPAQSVLSEVPSVPTNGMAK_ RVS(0.942)GPDPKPGS(0.056)NCS(0.002)PAQSVLSEVPSVPTNGMAK RVS(12.28)GPDPKPGS(-12.28)NCS(-25.92)PAQS(-98.9)VLS(-161.8)EVPS(-222.92)VPT(-243.57)NGMAK 0 0 1 2 P22314 P22314 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1030.78173828125 4 858.408727 3429.6058 30850.816463317 1.4106 0.0012109 200220 171.87 200220 171.87 1030.77919428962 81.068 1.1608 81.068 80.551 81.712 0 217 39 8 0.950707275627261 0.0115735026471889 0.0949996177182261 7.9584E-26 3 18946 273.52 254.31 7 102870000 18892 18304 23428 15151 38509 22474 42917 30155 19631 76554 17893 17273 23523 15866 38229 22440 42836 32256 20357 72783 3 3 3 3 3 3 3 3 3 3 4019 457 3554 3773 4460;4461;4462 4460 745;746 RVSHSPPPK 9 2 Phospho (STY) _RVS(ph)HS(ph)PPPK_ RVS(1)HS(1)PPPK RVS(73.88)HS(73.88)PPPK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 541.613342285156 3 388.836934 1163.48897 42545.0791463949 1.4035 0.00054575 392900 152.78 392900 152.78 541.612592650743 29.039 1.6779 29.039 27.723 29.401 0 220 57 5 0.985324322709998 0.0124920726390199 0.184109036446269 0.0077469 2 6322 73.877 43.439 1 372850000 96082 107760 105070 98560 92001 95357 100500 96807 110100 9416.4 90952 101740 105130 101710 94264 95760 102150 97332 108230 11107 2 2 2 2 2 2 2 2 2 2 4020 1436 3555 3774 4463;4464 4463 2657;2658 RVSHSPPPK 9 2 Phospho (STY) _RVS(ph)HS(ph)PPPK_ RVS(1)HS(1)PPPK RVS(63.76)HS(63.76)PPPK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 541.612243652344 3 388.836934 1163.48897 42829.8827409434 1.5641 0.0006082 392900 152.77 392900 152.77 541.611261183918 29.615 1.7813 29.615 29.458 31.239 0 201 59 5 0.666105031228042 0.00397353690486383 0.131204584081031 0.010688 2 6869 63.76 33.322 1 109370000 42744 37558 45426 39243 33012 50757 33296 39874 40651 7536.6 40457 35489 45436 40376 34245 50240 34080 40645 39799 8019.4 2 2 2 2 2 2 2 2 2 2 4021 1436 3555 3774 4465;4466 4466 2657;2658 RVSHSPPPK 9 2 Phospho (STY) _RVS(ph)HS(ph)PPPK_ RVS(1)HS(1)PPPK RVS(63.73)HS(63.73)PPPK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 541.612243652344 3 388.836934 1163.48897 42803.4835174748 1.4397 0.00055981 392900 152.77 392900 152.78 541.61122551115 31.714 0.67301 31.714 31.239 31.912 3.5527E-15 43 22 2 0.832544349895111 0.00134735418190531 0.0221956203398444 0.010726 1 7047 63.727 33.289 1 9047600 11114 9101.8 11514 9887.9 8928.5 8611.8 7063.6 9890.7 9951.4 2579.2 10518 8602.6 11536 10084 9189.7 8709.9 7358.8 9949.2 9696.5 2657.5 1 1 1 1 1 1 1 1 1 1 4022 1436 3555 3774 4467 4467 2657;2658 RVSHSPPPK 9 2 Phospho (STY) _RVS(ph)HS(ph)PPPK_ RVS(1)HS(1)PPPK RVS(50.22)HS(50.22)PPPK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 541.614074707031 3 388.836934 1163.48897 42803.5746528492 1.2457 0.00048438 392900 152.78 392910 152.78 541.612672245395 32.273 1.4214 32.273 31.912 33.334 0 71 48 2 0.397984751036967 0.00102705611398265 0.0416062085472234 0.026194 2 7189 50.222 20.534 1 9074500 21851 18690 21075 19872 18419 19223 15831 18510 20635 5867.9 20673 17662 21228 20321 18817 19300 16370 18771 20157 5953.7 2 2 2 2 2 2 2 2 2 2 4023 1436 3555 3774 4468;4469 4468 2657;2658 RVSHSPPPKQR 11 2 Phospho (STY) _RVS(ph)HS(ph)PPPKQR_ RVS(1)HS(1)PPPKQR RVS(48.18)HS(48.18)PPPKQR 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.332885742188 3 483.556831 1447.64866 39492.0028855678 2.0195 0.00097656 315940 152.77 315940 152.78 636.331749592198 24.313 1.5118 24.313 23.845 25.356 0 123 51 3 0.950287892317792 0.00353563207586211 0.0580811031344095 0.040481 1 5409 48.177 37.39 1 9088900 4065.9 3128.2 3996.9 3275.4 5788.5 3727 6353.9 4364.2 3393.8 1347.9 3847.1 2955.9 4051.6 3361.4 5773.6 3726.1 6359.5 4393.6 3474.2 1370.2 1 1 1 1 1 1 1 1 1 1 4024 1436 3556 3775 4470 4470 2657;2658 RVSLSEIGFGK 11 Phospho (STY) _RVS(ph)LSEIGFGK_ RVS(0.995)LS(0.005)EIGFGK RVS(22.98)LS(-22.98)EIGFGK 0 0 1 1 Q00536 Q00536 Q00536 CDK16 Cyclin-dependent kinase 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.659362792969 3 424.883111 1271.6275 41856.8551961772 1.9475 0.00082747 359570 152.78 359570 152.78 577.658229748193 82.381 0.53909 82.381 82.116 82.655 0 47 18 3 0.899037043518798 0.00139691479528035 0.022480372420101 4.5634E-05 1 19263 130.47 96.586 2 14271000 6084.9 6775.6 5927.8 6914.4 11320 6037.1 10931 7973.5 7284.5 4526.5 5757.3 6401.5 6043.3 7076.9 11161 6123.2 11046 8059.3 7342.3 4446.8 1 1 1 1 1 1 1 1 1 1 4025 822 3557 3776 4471 4471 1319 RVSPLNLSSVTP 12 Phospho (STY) _RVS(ph)PLNLSSVTP_ RVS(0.999)PLNLS(0.001)SVTP RVS(30.49)PLNLS(-30.49)S(-42.04)VT(-78.87)P 0 0 1 1 Q9UJX2 Q9UJX2 Q9UJX2 CDC23 Cell division cycle protein 23 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.926818847656 2 675.344867 1348.67518 35323.0435379854 2.1847 0.0014754 169660 114.58 169670 114.58 789.92638539842 81.838 0.86786 81.838 81.391 82.259 1.4211E-14 113 29 5 0.989404066484846 0.0014645890349426 0.0255529813105307 5.7161E-07 1 19091 147.7 128.6 4 170570000 8314.8 10528 7769.4 10318 8407.3 9170 7805.7 9628.8 11563 17306 7865.9 9944.7 7861.4 10588 8489.2 9281.2 8077.3 10162 11250 16519 1 1 1 1 1 1 1 1 1 1 4026 2162 3558 3777 4472 4472 3894;4811 RVSRTPEPK 9 2 Phospho (STY) _RVS(ph)RT(ph)PEPK_ RVS(1)RT(1)PEPK RVS(46.77)RT(46.77)PEPK 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 422.723266601563 4 308.14144 1228.53665 48410.7407850101 0.24914 7.6769E-05 371850 114.58 371850 114.58 422.723015014834 29.633 2.604 29.633 28.837 31.441 0 237 87 4 0.679384148556836 0.00445813159379182 0.0851000413333668 0.031884 1 6527 46.768 19.879 1 108540000 24863 23383 26011 20446 23799 21640 21133 21794 22396 2950.3 23531 22073 26093 21192 24245 21645 21674 21944 22045 3282.5 1 1 1 1 1 1 1 1 1 1 4027 1436 3559 3778 4473 4473 2659;4665 RVSRTPEPK 9 2 Phospho (STY) _RVS(ph)RT(ph)PEPK_ RVS(1)RT(1)PEPK RVS(96.87)RT(96.87)PEPK 0 0 2 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.295654296875 3 410.519494 1228.53665 41603.5692100047 1.8145 0.0007449 372150 152.77 372150 152.78 563.294892412829 29.608 4.6748 29.608 28.581 33.256 0 435 158 6 0.991693094154895 0.0268567157475454 0.598074051231132 0.0038589 2 6716 96.866 66.137 1 817370000 112200 108370 114860 107970 117810 112190 127430 109310 116510 3907.4 106180 102370 115560 110960 119510 112240 128960 109880 115430 6209.2 2 2 2 2 2 2 2 2 2 2 4028 1436 3559 3778 4474;4475 4474 2659;4665 RVSRTPEPK 9 Phospho (STY) _RVS(ph)RTPEPK_ RVS(0.977)RT(0.023)PEPK RVS(16.26)RT(-16.26)PEPK 0 0 1 2 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 536.639953613281 3 383.86405 1148.57032 43145.2643486305 1.4217 0.00054572 397990 152.77 397990 152.78 536.639195068652 29.792 0.55561 29.792 29.518 30.074 -3.5527E-15 61 18 5 0.711393768367015 0.00603168454413258 0.0647138889087398 0.055167 1 6640 46.069 28.404 2 52039000 30494 38419 32610 39097 60918 33387 59584 45763 35755 1244.8 28863 36297 33059 40010 60107 33878 60063 45461 36290 2231.3 1 1 1 1 1 1 1 1 1 1 4029 1436 3559 3779 4476 4476 2659;4665 RVSVCAETYNPDEEEEDTDPR 21 Phospho (STY) _RVS(ph)VCAETYNPDEEEEDTDPR_ RVS(1)VCAETYNPDEEEEDTDPR RVS(39.54)VCAET(-39.54)Y(-108.03)NPDEEEEDT(-118.34)DPR 0 0 1 1 P13861 P13861 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 940.736328125 3 864.346167 2590.01667 32646.9929048132 1.113 0.00096204 88376 76.388 88378 76.389 941.068424395204 52.148 0.48625 52.148 51.892 52.378 -7.1054E-15 52 16 4 0.967219455271809 0.00102672623741861 0.00726971567799828 1.2019E-11 1 12123 200.06 184.47 4 33667000 5810.8 5187.6 5902.9 4638.7 6681.7 6343.6 7280.6 6299.6 5252 6626.6 5498.9 4897.4 5949.3 4823.7 6741.2 6294.3 7326.7 6520.3 5268.2 6385.5 1 1 1 1 1 1 1 1 1 1 4030 383 3560 3780 4477 4477 618 RVTIMPK 7 Unmodified _RVTIMPK_ 0 0 0 1 P84243;Q6NXT2;Q71DI3;Q16695;P68431 P84243;Q71DI3 Q71DI3 H3F3A;H3F3C;HIST2H3A;HIST3H3;HIST1H3A Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1t;Histone H3.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 434.949432373047 3 282.173958 843.500044 47921.7038975187 0.64087 0.00018084 541420 152.78 541420 152.78 434.949131768521 52.411 0.4237 52.411 52.211 52.635 7.1054E-15 34 14 3 0.963722721919853 0.000747441540292556 0.0123062513442775 0.029903 1 12213 60.478 3.1966 1 7839100 19902 15885 19051 15218 13202 19288 14196 18778 18000 995.54 18829 15002 19163 15731 13760 19147 14507 18885 17599 1372 1 1 1 1 1 1 1 1 1 1 4031 790;815 3561 3781 4478 4478 RVTQHESDNENEIQIQNK 18 Phospho (STY) _RVTQHES(ph)DNENEIQIQNK_ RVT(0.062)QHES(0.938)DNENEIQIQNK RVT(-11.82)QHES(11.82)DNENEIQIQNK 0 0 1 1 Q5VZL5 Q5VZL5 Q5VZL5 ZMYM4 Zinc finger MYM-type protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 907.784545898438 3 754.676399 2261.00737 32664.5150121241 1.6818 0.0012692 202440 152.77 202440 152.77 907.783663193525 43.712 0.38478 43.712 43.609 43.994 0 33 12 4 0.409545384539629 0.000196626761695321 0.0091384833144481 1.9921E-07 1 10082 150.83 132.46 2 12496000 6598 5976.6 7730.4 7843.6 7754.1 7490.8 8067 7343.4 6631.2 14610 6247.7 5656.5 7719.9 7933.9 7870.6 7549.9 8157.2 7811.9 6603.9 13927 1 1 1 1 1 1 1 1 1 1 4032 1216 3562 3782 4479 4479 2142 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 Phospho (STY) _RVVLGDGVQLPPGDYSTTPGGTLFS(ph)TTPGGTR_ RVVLGDGVQLPPGDYSTTPGGTLFS(0.352)T(0.276)T(0.276)PGGT(0.096)R RVVLGDGVQLPPGDY(-84.04)S(-61.02)T(-52.74)T(-52.74)PGGT(-31.13)LFS(1.06)T(-1.06)T(-1.06)PGGT(-5.67)R 0 0 1 1 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.197570800781 4 821.655323 3282.59219 33874.5716652874 1.7351 0.0014256 69726 57.291 69728 57.292 879.44805336039 90.657 2.5356 90.657 89.662 92.198 1.4211E-14 221 87 4 0.965372214040791 0.00274735964773666 0.0873753959748275 4.32E-05 3 21023 114.76 101.35 9 18162000 7279.7 7314.7 7900.4 6734.6 7773.7 8277.1 7474.5 8550.7 6454.4 52346 6890.8 6906.6 7917.4 6975.1 7891.1 8329.7 7594.9 10144 6411.8 49488 3 3 3 3 3 3 3 3 3 3 4033 964 3563 3783 4480;4481;4482 4480 1635;4544;4545;4546 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 2 Phospho (STY) _RVVLGDGVQLPPGDYST(ph)TPGGTLFSTT(ph)PGGTR_ RVVLGDGVQLPPGDY(0.006)S(0.123)T(0.458)T(0.41)PGGT(0.039)LFS(0.257)T(0.184)T(0.45)PGGT(0.073)R RVVLGDGVQLPPGDY(-19.11)S(-5.85)T(0.5)T(-0.5)PGGT(-11.54)LFS(-2.43)T(-3.92)T(2.43)PGGT(-7.94)R 0 0 2 1 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1198.58544921875 3 1121.86012 3362.55852 28595.7547242072 1.5203 0.0017056 68090 76.387 68091 76.389 1198.5814759052 90.949 1.6707 90.949 89.956 91.627 1.4211E-14 119 57 3 0.766514299348208 0.00148977419497573 0.0815999194841693 0.0065429 1 21040 76.458 57.96 36 14510000 770.88 553.52 1498.4 1365.6 1414.5 501.62 650.14 2018.5 682.12 24816 732.18 527.52 1464.5 1338.8 1429.6 607.11 699.37 2713.6 671.69 23414 1 1 1 1 1 1 1 1 1 1 4034 964 3563 3784 4483 4483 1635;4544;4545;4546 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 2 Phospho (STY) _RVVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR_ RVVLGDGVQLPPGDYS(0.018)T(0.075)T(0.865)PGGT(0.085)LFS(0.086)T(0.203)T(0.531)PGGT(0.137)R RVVLGDGVQLPPGDY(-36)S(-17.14)T(-10.8)T(10.8)PGGT(-10.37)LFS(-8.32)T(-4.18)T(4.18)PGGT(-5.93)R 0 0 2 1 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 899.440612792969 4 841.646906 3362.55852 32909.9378051938 1.7364 0.0014615 68068 57.29 68070 57.291 899.438836502155 93.492 2.5975 93.492 92.63 95.227 0 240 89 4 0.372897233376349 0.000973584606109368 0.0226972997225742 0.01322 1 22051 67.409 57.697 36 22978000 4036.1 4494.4 4051.8 4590.8 5123.7 3635.9 3390.9 6133.6 3802.7 71545 3819.3 4246.2 4088.9 4692.4 5112.1 3853.1 3546.2 8211.4 3734.7 67510 1 1 1 1 1 1 1 1 1 1 4035 964 3563 3784 4484 4484 1635;4544;4545;4546 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 2 Phospho (STY) _RVVLGDGVQLPPGDYST(ph)TPGGTLFSTT(ph)PGGTR_ RVVLGDGVQLPPGDY(0.006)S(0.125)T(0.495)T(0.374)PGGT(0.042)LFS(0.225)T(0.142)T(0.463)PGGT(0.129)R RVVLGDGVQLPPGDY(-19.18)S(-5.99)T(1.24)T(-1.24)PGGT(-10.61)LFS(-3.14)T(-5.19)T(3.14)PGGT(-5.59)R 0 0 2 1 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1198.58081054688 3 1121.86012 3362.55852 28781.0423509065 1.6766 0.0018809 68091 76.388 68092 76.39 1198.58218319323 95.786 2.2158 95.786 95.227 97.443 0 142 76 3 0.603696571243979 0.00118106135025108 0.0465511383444043 0.0053348 3 22273 81.098 64.735 36 18563000 3670.9 2925.3 3180.9 3706.1 2967.7 3341.2 3755.5 5235.1 3795.6 64557 3471.8 2767.8 3230 3751.8 3035.4 3510.6 3786 7123 3743.4 60909 3 3 3 3 3 3 3 3 3 3 4036 964 3563 3784 4485;4486;4487 4486 1635;4544;4545;4546 RVWAPSCQRR 10 Unmodified _RVWAPSCQRR_ 0 0 0 2 P32745 P32745 P32745 SSTR3 Somatostatin receptor type 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 386.964904785156 4 329.675466 1314.67276 51615.3155171974 0.40604 0.00013386 173780 57.289 173780 57.29 386.964674074514 20.186 0.26978 20.186 20.02 20.29 0 24 8 4 0.703789631729853 0.00628147828748049 0.127632499856279 0.055414 1 4586 12.213 1.6204 1 1571400 2972.6 3451.3 3245.3 3055 3741.1 3781.4 3554.9 3722.5 3152.9 3233.6 2813.9 3258.1 3257.8 3172.6 3764.1 3763.2 3616.5 3833.6 3128.1 3131 1 1 1 1 1 1 1 1 1 1 4037 529 3564 3785 4488 4488 RWDQTADQTPGATPK 15 Phospho (STY) _RWDQTADQTPGAT(ph)PK_ RWDQTADQT(0.005)PGAT(0.995)PK RWDQT(-40.58)ADQT(-23.27)PGAT(23.27)PK 0 0 1 1 O75533 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.704895019531 3 584.596469 1750.76758 37185.5847662303 1.2624 0.00073799 261330 152.77 261330 152.77 737.703476071377 48.151 0.55682 48.151 47.889 48.446 0 58 18 4 0.588048004790109 0.00299783054805118 0.0123956190474411 0.055509 1 11158 62.412 42.306 3 37342000 36183 32891 38546 34975 24945 39536 25822 34801 37227 13764 34247 31083 38513 35857 26140 39392 26555 35506 36248 13766 1 1 1 1 1 1 1 1 1 1 4038 190 3565 3786 4489 4489 4340 RYPSSISSSPQK 12 Phospho (STY) _RYPSSISS(ph)SPQK_ RYPSSIS(0.003)S(0.499)S(0.499)PQK RY(-103.8)PS(-51.64)S(-47.38)IS(-22.65)S(0)S(0)PQK 0 0 1 1 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.665344238281 3 472.888813 1415.64461 39454.473869019 1.5872 0.00075059 323070 152.78 323070 152.78 625.664153957466 42.95 0.8157 42.95 42.538 43.354 0 103 27 5 0.621315414135378 0.015309652233655 0.106902254380657 3.711E-07 2 9798 146.27 115.31 6 303640000 217470 232990 226700 209680 119210 246510 137220 208200 240440 3769.5 205820 219970 226460 217310 127670 244970 141640 210430 232870 8367.9 2 2 2 2 2 2 2 2 2 2 4039 993 3566 3787 4490;4491 4490 1679;1680;1681 RYPSSISSSPQKDLTQAK 18 Phospho (STY) _RYPSSISSS(ph)PQKDLTQAK_ RYPSSISS(0.022)S(0.978)PQKDLTQAK RY(-152.76)PS(-74.79)S(-77.34)IS(-48.73)S(-16.5)S(16.5)PQKDLT(-78.59)QAK 0 0 1 2 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.130310058594 4 519.005764 2071.99395 37829.5498433385 1.5568 0.000808 331160 171.87 331160 171.87 691.128572928511 55.871 0.77086 55.871 55.566 56.337 -7.1054E-15 123 25 6 0.809399612662242 0.00658999341821954 0.156678721133045 1.021E-22 1 13014 260.41 220.73 7 356830000 46216 44104 49895 36819 29558 51361 35228 46414 44361 5850.1 43746 41622 49792 38483 31285 50781 35837 46924 43383 6582.8 1 1 1 1 1 1 1 1 1 1 4040 993 3567 3788 4492 4492 1679;1680;1681 RYPSSISSSPQKDLTQAK 18 2 Phospho (STY) _RYPSS(ph)ISS(ph)SPQKDLTQAK_ RY(0.015)PS(0.161)S(0.795)IS(0.075)S(0.608)S(0.346)PQKDLTQAK RY(-16.53)PS(-7.14)S(7.14)IS(-11.84)S(2.43)S(-2.43)PQKDLT(-36.36)QAK 0 0 2 2 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 947.82666015625 3 718.32737 2151.96028 33739.9594596787 1.8166 0.0013049 319020 229.16 319030 229.17 947.825005159954 59.159 0.46392 59.159 58.932 59.396 7.1054E-15 36 15 4 0.939407553698317 0.00110134422536111 0.0419492123416365 0.00071524 1 13879 99.93 83.834 21 10973000 13087 11738 13682 10534 5590.7 13141 5703.6 11192 13997 10557 12385 11082 13644 10931 6160.7 13051 6027.5 11620 13459 10200 1 1 1 1 1 1 1 1 1 1 4041 993 3567 3789 4493 4493 1679;1680;1681 RYSPPIQR 8 Phospho (STY) _RYS(ph)PPIQR_ RYS(1)PPIQR RY(-60.14)S(60.14)PPIQR 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 442.569915771484 3 366.181491 1095.52264 46853.5698754076 1.0715 0.00039235 208610 76.387 208610 76.388 442.569254323244 38.606 1.7388 38.606 37.597 39.336 0 229 59 6 0.991673766655708 0.0773128288782756 1 0.00036661 2 8774 126.71 75.759 2 592490000 117460 141400 132350 121600 138090 124400 149650 132840 137760 2930.3 111200 133460 132510 126100 139950 124680 151450 133010 136440 5833.8 2 2 2 2 2 2 2 2 2 2 4042 1436 3568 3790 4494;4495 4495 2660 RYSPSPPPK 9 Phospho (STY) _RYSPS(ph)PPPK_ RY(0.002)S(0.277)PS(0.72)PPPK RY(-24.6)S(-4.15)PS(4.15)PPPK 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 522.954467773438 3 370.177746 1107.51141 43242.2983107653 0.82073 0.00030382 412710 152.78 412710 152.78 523.28825887361 39.839 0.86746 39.839 39.282 40.149 0 74 29 3 0.866577107925698 0.00195240417847527 0.0263137251956791 0.0093214 1 9001 75.695 61.489 3 20141000 11517 12606 10361 11370 12155 10728 15075 13306 12256 1516.8 10894 11901 10526 11739 12267 10817 15127 13292 12213 1736.2 1 1 1 1 1 1 1 1 1 1 4043 1436 3569 3791 4496 4496 2661;2662 RYSPSPPPK 9 2 Phospho (STY) _RYS(ph)PS(ph)PPPK_ RY(0.003)S(0.997)PS(1)PPPK RY(-24.68)S(24.68)PS(41.62)PPPK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.609008789063 3 396.83319 1187.47774 41389.3337905498 1.7145 0.00068037 384990 152.78 384990 152.78 549.608647769312 41.838 4.7261 41.838 40.568 45.294 0 517 163 5 0.996817017637398 0.046682971848592 0.311319534841688 0.00032291 3 9532 106.17 87.394 3 524230000 176440 178640 156470 172680 191540 159980 199920 202320 191040 5602.6 166890 168720 159150 177460 192410 161460 202850 201470 188880 9957.9 3 3 3 3 3 3 3 3 3 3 4044 1436 3569 3792 4497;4498;4499 4498 2661;2662 RYSPSPPPK 9 2 Phospho (STY) _RYS(ph)PS(ph)PPPK_ RYS(1)PS(1)PPPK RY(-40.34)S(40.34)PS(54.4)PPPK 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.9111328125 2 594.746147 1187.47774 33654.6243263811 2.6521 0.0015773 385310 229.16 385320 229.16 823.909520050741 41.832 2.5535 41.832 40.857 43.41 7.1054E-15 245 88 4 0.994929525163667 0.00565426648907403 0.208242721709551 0.00010351 1 9487 128.61 114.65 3 118270000 51616 63149 54076 56257 60474 55708 64507 58968 64355 7068 48851 59615 54396 58174 61049 55917 65465 59236 63505 8020.1 1 1 1 1 1 1 1 1 1 1 4045 1436 3569 3792 4500 4500 2661;2662 RYWEEETVPTTAGASPGPPR 20 Phospho (STY) _RYWEEETVPTTAGAS(ph)PGPPR_ RYWEEETVPTTAGAS(1)PGPPR RY(-147.14)WEEET(-88.95)VPT(-69.91)T(-49.93)AGAS(49.93)PGPPR 0 0 1 1 O15213 O15213 O15213 WDR46 WD repeat-containing protein 46 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.738708496094 3 761.014352 2280.02123 34341.7155535955 1.6766 0.0012759 100380 76.387 100380 76.389 837.736203633382 61.777 0.50115 61.777 61.535 62.036 0 46 16 4 0.984482187477132 0.00240493682246258 0.0245940569743549 2.8559E-11 1 14506 194.19 163.23 5 20307000 8165.6 7649.7 8463.1 7243.9 7572.2 8158.8 7264.4 8683.9 8143.5 17532 7727.8 7224.1 8493.3 7477.3 7733.3 8176.7 7433.4 9218.5 7997.9 16710 1 1 1 1 1 1 1 1 1 1 4046 83 3570 3793 4501 4501 145 SAAATSPAPHLVAGPLLGTVGK 22 Phospho (STY) _SAAATS(ph)PAPHLVAGPLLGTVGK_ S(0.022)AAAT(0.112)S(0.867)PAPHLVAGPLLGTVGK S(-15.99)AAAT(-8.9)S(8.9)PAPHLVAGPLLGT(-128.92)VGK 0 0 1 0 Q96RK0 Q96RK0 Q96RK0 CIC Protein capicua homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.1494140625 3 699.036428 2094.08746 35393.6134035623 1.3052 0.0009124 218550 152.78 218550 152.78 852.146973240789 86.314 0.51762 86.314 86.043 86.561 0 37 17 3 0.819051261963836 0.000854647762264882 0.0133194550756225 3.7754E-08 1 20157 158.2 140.92 4 9094700 9025.9 10228 8536.7 9717.1 8796.3 9073.9 7515.8 10576 10657 18390 8539 9659.5 8624.9 9998.1 8896.1 9177.4 7797.9 11104 10382 17561 1 1 1 1 1 1 1 1 1 1 4047 1737 3571 3794 4502 4502 3189 SAAPSQLQGNSFK 13 Phospho (STY) _SAAPSQLQGNS(ph)FK_ SAAPSQLQGNS(1)FK S(-76.61)AAPS(-62.52)QLQGNS(62.52)FK 0 0 1 0 Q9Y620 Q9Y620 Q9Y620 RAD54B DNA repair and recombination protein RAD54B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.327392578125 3 472.216929 1413.62896 39277.8007332079 1.4971 0.00070694 323530 152.78 323530 152.78 625.326150418227 56.215 0.38592 56.215 56.039 56.425 -7.1054E-15 39 12 4 0.92978393800735 0.00207032783178112 0.0190168732789777 0.0042338 1 13138 89.489 72.549 3 11715000 11717 12797 14785 12482 10996 14374 9459 12417 13162 10409 11099 12087 14662 12865 11364 14318 9803.6 12845 12830 10089 1 1 1 1 1 1 1 1 1 1 4048 2307 3572 3795 4503 4503 4254 SAAPSTLDSSSTAPAQLGK 19 Phospho (STY) _SAAPST(ph)LDSSSTAPAQLGK_ S(0.001)AAPS(0.157)T(0.841)LDSSSTAPAQLGK S(-28.63)AAPS(-7.28)T(7.28)LDS(-49.2)S(-75.24)S(-92.7)T(-92.51)APAQLGK 0 0 1 0 Q9Y5M8 Q9Y5M8 Q9Y5M8 SRPRB Signal recognition particle receptor subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.40283203125 3 623.626094 1867.85645 35064.2952297563 1.9618 0.0012234 244980 152.78 244980 152.78 776.401872668655 59.393 0.48697 59.393 59.191 59.678 0 44 16 4 0.972579481711496 0.00294828246500708 0.0504954969275395 2.8192E-08 1 13912 172.81 139.62 7 23749000 8185.4 11258 8737.2 11056 18352 7322.9 19770 15138 11522 14689 7747.5 10634 8886.5 11304 18068 7632.3 19830 15325 11719 14181 1 1 1 1 1 1 1 1 1 1 4049 2296 3573 3796 4504 4504 4853 SAASPVVSSMPER 13 Phospho (STY) _SAAS(ph)PVVSSMPER_ S(0.221)AAS(0.779)PVVSSMPER S(-5.47)AAS(5.47)PVVS(-46.58)S(-59.01)MPER 0 0 1 0 P18583 P18583 P18583 SON Protein SON MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 813.893005371094 2 699.310167 1396.60578 34601.1955564243 1.3322 0.00093161 163850 114.58 163850 114.58 813.892089839077 50.484 0.45873 50.484 50.274 50.732 0 42 15 4 0.81349105256912 0.00189914318427455 0.0725896642883958 1.2681E-15 1 11722 214.58 173.36 4 32531000 30086 24627 31631 27650 24467 29841 27523 26840 26131 11254 28475 23282 31680 28241 25295 29797 27832 27378 25843 11218 1 1 1 1 1 1 1 1 1 1 4050 428 3574 3797 4505 4505 692 SADGAEADGSTQVTVEEPVQQPSVVDR 27 Acetyl (Protein N-term) _(ac)SADGAEADGSTQVTVEEPVQQPSVVDR_ 1 0 0 0 O60664 O60664 O60664 PLIN3 Perilipin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.776489257813 3 938.440573 2812.29989 32361.3085957829 1.7658 0.0016571 -0.37717 -0.00035395 1.3887 0.0013032 938.774507199908 60.228 0.63601 60.228 59.937 60.573 0 79 21 5 0.992708125938314 0.00508941481275579 0.0365943319620399 3.7044E-18 1 14096 167.57 153.84 1 51855000 3657.7 2347.7 2208.5 2222.3 2818.8 3277.4 1992.8 2781.9 2586.2 9901.5 3455.7 2217.1 2313 2306.4 2813.3 3250.5 2084.4 3108 2526.6 9387.8 1 1 1 1 1 1 1 1 1 1 4051 152 3575 3798 4506 4506 SAEKTEK 7 Phospho (STY) _S(ph)AEKTEK_ S(1)AEKTEK S(41.41)AEKT(-41.41)EK 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.437194824219 2 436.69169 871.368828 36081.3569696495 2.3956 0.0010461 787160 343.74 787160 343.75 780.435908109409 31.789 0.64582 31.789 31.532 32.178 -3.5527E-15 66 21 4 0.690831513064809 0.00453136249438391 0.0509626834467379 0.01419 1 7091 78.488 46.073 2 93044000 55843 67201 51856 68679 58288 52419 68591 67520 75180 4850.5 52827 63491 52544 70166 58923 53467 69506 67288 73900 6130 1 1 1 1 1 1 1 1 1 1 4052 2257 3576 3799 4507 4507 4170 SAENPPSGSVRK 12 Phospho (STY) _SAENPPS(ph)GSVRK_ SAENPPS(0.513)GS(0.487)VRK S(-34.46)AENPPS(0.23)GS(-0.23)VRK 0 0 1 1 Q15014 Q15014 Q15014 MORF4L2 Mortality factor 4-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 589.645751953125 3 436.869641 1307.58709 40283.1156093972 1.4201 0.00062042 349710 152.78 349710 152.78 589.645136883254 33.325 0.73582 33.325 32.882 33.618 0 53 25 3 0.47621316194657 0.000885987953808807 0.00340385753284172 0.036722 1 7475 50.305 32.979 3 26830000 23497 24838 21846 22775 21393 23276 23458 23711 23599 1925.1 22228 23452 22091 23519 21766 23318 23783 23825 23279 2361.5 1 1 1 1 1 1 1 1 1 1 4053 1043 3577 3800 4508 4508 1803 SAEPSPTVMSTSLGSNLSELDR 22 Phospho (STY) _SAEPSPTVMSTS(ph)LGSNLSELDR_ SAEPSPTVMST(0.102)S(0.897)LGSNLSELDR S(-103.99)AEPS(-91.97)PT(-84.73)VMS(-33.79)T(-9.43)S(9.43)LGS(-37.08)NLS(-48.39)ELDR 0 0 1 0 P49023 P49023 P49023 PXN Paxillin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 863.4140625 3 786.689205 2357.04579 33852.7687969582 1.3081 0.001029 97101 76.388 97102 76.389 863.411802986028 86.168 0.34923 86.168 85.957 86.307 0 20 11 3 0.968202467049087 0.00148451371714686 0.0789969834189535 1.4002E-08 1 20119 169.41 149.32 8 10356000 4078.1 3970.9 4453.9 4775 4351.1 3922.3 3032.3 4402.6 4793 16760 3860.3 3755.8 4459.4 4840 4404.6 4007.2 3198.1 4902.5 4654.5 15884 1 1 1 1 1 1 1 1 1 1 4054 632 3578 3801 4509 4509 1046 SAFTPATATGSSPSPVLGQGEK 22 Phospho (STY) _SAFTPATATGSSPS(ph)PVLGQGEK_ SAFTPATATGSS(0.001)PS(0.999)PVLGQGEK S(-110.77)AFT(-104.79)PAT(-88.66)AT(-67.47)GS(-47.65)S(-28.81)PS(28.81)PVLGQGEK 0 0 1 0 CON__ENSEMBL:ENSBTAP00000001528;Q15811 CON__ENSEMBL:ENSBTAP00000001528 CON__ENSEMBL:ENSBTAP00000001528 ITSN1 Intersectin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.117797851563 3 724.006974 2168.99909 33828.2527940822 1.526 0.0011048 211010 152.77 211010 152.78 877.115603103545 70.374 0.4346 70.374 70.073 70.507 0 50 14 5 0.983158355348792 0.00425922676108279 0.018800047715804 5.5465E-12 1 16494 194.77 180.75 7 36319000 10438 7990.7 9386.8 8222.3 13230 10593 14723 12127 9312.4 13004 9873.3 7549.8 9562.2 8466.4 13215 10556 14767 12496 9418 12525 1 1 1 1 1 1 1 1 1 1 + 4055 20 3579 3802 4510 4510 37 SAGAGSPARPPSPR 14 2 Phospho (STY) _SAGAGS(ph)PARPPS(ph)PR_ S(0.42)AGAGS(0.58)PARPPS(1)PR S(-1.4)AGAGS(1.4)PARPPS(37.91)PR 0 0 2 1 P83369 P83369 P83369 LSM11 U7 snRNA-associated Sm-like protein LSm11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 566.263610839844 3 489.876229 1466.60686 42937.3590354574 1.4585 0.00071446 155930 76.388 155930 76.388 566.264287281415 29.246 0.53443 29.246 28.866 29.401 3.5527E-15 37 17 3 0.381293682185089 0.00115563650833937 0.027743577785165 0.051316 1 6517 43.116 20.884 3 5636300 11701 8301.5 10802 7590.9 8397.7 10859 8639.4 8374.4 8130.3 2714.5 11069 7838.1 10900 7890 8666.9 10712 8768.6 8578.2 8043.7 2749.8 1 1 1 1 1 1 1 1 1 1 4056 808 3580 3803 4511 4511 1292;1293 SAGALEEGTSEGQLCGR 17 Phospho (STY) _S(ph)AGALEEGTSEGQLCGR_ S(0.967)AGALEEGT(0.031)S(0.002)EGQLCGR S(15.01)AGALEEGT(-15.01)S(-26.14)EGQLCGR 0 0 1 0 Q8N2F6 Q8N2F6 Q8N2F6 ARMC10 Armadillo repeat-containing protein 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1015.95721435547 2 901.374755 1800.73496 30646.5864414306 1.6353 0.001474 127120 114.58 127120 114.58 1015.95622650394 53.586 0.50656 53.586 53.294 53.801 0 55 16 4 0.983393604603802 0.000992950599793968 0.0140332847515159 2.8852E-41 1 12472 329.72 301 3 32843000 8169.8 19134 7134 16155 12235 6680.9 9963.3 12884 17484 4516.7 7726.9 18059 7301.2 16617 12090 7205.8 10457 12820 16933 4551.2 1 1 1 1 1 1 1 1 1 1 4057 1459 3581 3804 4512 4512 2703 SAGAPASVSGQDADGSTSPR 20 Phospho (STY) _SAGAPASVSGQDADGSTS(ph)PR_ SAGAPASVSGQDADGS(0.008)T(0.083)S(0.91)PR S(-148.87)AGAPAS(-130.42)VS(-97.46)GQDADGS(-20.76)T(-10.42)S(10.42)PR 0 0 1 0 P42679 P42679 P42679 MATK Megakaryocyte-associated tyrosine-protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.994445800781 3 633.268969 1896.78508 37384.5547970726 1.5077 0.00095477 120630 76.388 120630 76.389 709.991970309112 33.949 0.42945 33.949 33.676 34.105 0 37 14 3 0.869835950334771 0.00178525861279705 0.0135466419021761 4.6563E-08 1 7586 165.34 145.52 6 15024000 6420.3 4803.2 6527 5171 6607.9 5521.6 6236.7 6112.7 4777.6 3891.5 6075.7 4539.5 6566.5 5292.6 6694.3 5533.6 6326.3 6225.8 4775.9 3805.8 1 1 1 1 1 1 1 1 1 1 4058 589 3582 3805 4513 4513 954 SAGEEEDGPVLTDEQK 16 Phospho (STY) _S(ph)AGEEEDGPVLTDEQK_ S(1)AGEEEDGPVLTDEQK S(182.15)AGEEEDGPVLT(-182.15)DEQK 0 0 1 0 Q66PJ3 Q66PJ3 Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.357299804688 3 595.247171 1782.71968 35709.4639589176 1.7781 0.0010584 256660 152.77 256660 152.78 748.355600010041 57.009 1.1533 57.009 56.693 57.847 7.1054E-15 144 39 5 0.822433014543887 0.0191536790842126 0.0726025546841332 2.0046E-11 1 13311 208.59 179.26 2 193650000 83845 60367 83002 58345 100840 78701 102140 69890 62111 14010 79336 57015 83848 60357 101260 77893 102810 70869 62983 14809 1 1 1 1 1 1 1 1 1 1 4059 1225 3583 3806 4514 4514 2163 SAGSFKR 7 Phospho (STY) _SAGS(ph)FKR_ SAGS(1)FKR S(-39.11)AGS(39.11)FKR 0 0 1 1 P21359 P21359 P21359 NF1 Neurofibromin;Neurofibromin truncated MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.853088378906 2 416.689285 831.364017 39863.3437962408 2.4447 0.0010187 549960 229.16 549960 229.16 645.852071957388 36.205 0.37625 36.205 35.996 36.372 0 28 12 3 0.991031462900322 0.00177307250433705 0.0283780949009621 0.050849 1 8150 53.517 33.378 2 24835000 19881 25549 20272 24018 21565 19488 24560 22712 26086 3870.2 18814 24127 20411 24681 21852 19784 24898 22773 25674 4169.9 1 1 1 1 1 1 1 1 1 1 4060 452 3584 3807 4515 4515 738 SAGTATQMR 9 Oxidation (M),Phospho (STY) _S(ph)AGTATQM(ox)R_ SAGTATQM(1)R S(0.996)AGT(0.003)AT(0.001)QMR SAGTATQM(45.13)R S(25.77)AGT(-25.77)AT(-28.91)QMR 0 1 1 0 Q92934 Q92934 Q92934 BAD Bcl2-associated agonist of cell death MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.287414550781 2 509.704806 1017.39506 39724.0453571961 1.8219 0.00092863 224800 114.58 224800 114.58 624.286262004438 23.391 0.34819 23.391 23.236 23.585 3.5527E-15 21 11 3 0.983553331789175 0.00200216911540462 0.0711560796789749 0.051503 1 5247 45.126 25.205 3 2361700 1579.6 2352.4 1475 2428.6 1471.5 1548.1 1801.3 2071.1 2944.1 1589 1494.3 2222.7 1491.9 2474.8 1499.2 1600.5 1849 2105.1 2856.5 1544.2 1 1 1 1 1 1 1 1 1 1 4061 1633 3585 3808 4516 4516 191 3018 SALEDKERDEDDEDGDGDGDGATGK 25 Unmodified _SALEDKERDEDDEDGDGDGDGATGK_ 0 0 0 2 P50579 P50579 P50579 METAP2 Methionine aminopeptidase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.889038085938 4 649.765485 2595.03284 34436.7501514991 2.3185 0.0015065 264510 171.87 264520 171.87 821.88801361795 44.641 0.43032 44.641 44.398 44.829 -7.1054E-15 42 14 4 0.935930173835284 0.0011255303409827 0.00902578398564067 8.9142E-18 1 10280 223.69 196.58 1 16158000 16487 12401 14829 10961 12827 16769 11164 13950 11873 3776.6 15594 11707 14999 11436 13113 16520 11463 14216 11685 3879 1 1 1 1 1 1 1 1 1 1 4062 667 3586 3809 4517 4517 SALSPSKSPAK 11 Phospho (STY) _SALSPSKS(ph)PAK_ SALSPSKS(1)PAK S(-71.1)ALS(-46.11)PS(-33.68)KS(33.68)PAK 0 0 1 1 P49792;Q7Z3J3 P49792 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.023498535156 3 384.860194 1151.55875 40323.0708833317 2.3388 0.00090009 595440 229.16 595450 229.16 614.022932839969 45.848 0.52385 45.848 45.585 46.109 -7.1054E-15 63 17 5 0.785418714724684 0.00460289538282715 0.0537470016649201 0.00028078 1 10543 101.01 73.242 4 65640000 45639 52044 46631 53038 35181 44233 35620 43193 59438 5393.9 43190 49170 46759 54256 36407 44727 36889 43528 57637 6078.7 1 1 1 1 1 1 1 1 1 1 4063 655 3587 3810 4518 4518 1098;1099 SALSPSKSPAK 11 2 Phospho (STY) _SALS(ph)PSKS(ph)PAK_ SALS(0.911)PS(0.094)KS(0.995)PAK S(-37.23)ALS(10.07)PS(-10.07)KS(22.6)PAK 0 0 2 1 P49792;Q7Z3J3 P49792 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.678894042969 3 411.515638 1231.52508 39504.8347259311 2.02 0.00083126 556880 229.16 556880 229.16 640.678619675982 48.783 0.94848 48.783 48.505 49.453 0 86 32 4 0.977621925593998 0.00231911033614583 0.0122204215673566 0.00015821 1 11289 109.14 88.312 6 90262000 21469 44985 24807 42433 14155 23657 13839 27529 42828 5941.1 20328 42481 24657 43423 15016 24611 14896 27643 41029 6231.4 1 1 1 1 1 1 1 1 1 1 4064 655 3587 3811 4519 4519 1098;1099 SAMDSPVPASMFAPEPSSPGAAR 23 Oxidation (M),Phospho (STY) _SAM(ox)DSPVPASMFAPEPSS(ph)PGAAR_ SAM(1)DSPVPASMFAPEPSSPGAAR SAMDSPVPASMFAPEPS(0.288)S(0.712)PGAAR SAM(73.75)DSPVPASM(-73.75)FAPEPSSPGAAR S(-95.59)AMDS(-92.46)PVPAS(-55.2)MFAPEPS(-3.92)S(3.92)PGAAR 0 1 1 0 O00178 O00178 O00178 GTPBP1 GTP-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.728088378906 3 786.004359 2354.99125 32941.6314750508 1.7438 0.0013706 97186 76.389 97188 76.39 862.72718502437 76.881 0.66608 76.881 76.53 77.196 0 85 22 5 0.832853791700328 0.00539060044644523 0.0851286494735965 4.5834E-05 1 17998 116.72 104.64 10 56863000 6608.8 9003.9 7030.6 10447 10243 5701 9744.7 9466.4 9093.1 18126 6255.2 8513.9 7093.6 10562 10197 6007.5 9925.3 9895.7 8999.8 17287 1 1 1 1 1 1 1 1 1 1 4065 35 3588 3812 4520 4520 3 58 SAMDSPVPASMFAPEPSSPGAAR 23 Phospho (STY) _SAMDSPVPASMFAPEPSS(ph)PGAAR_ SAMDSPVPASMFAPEPS(0.15)S(0.85)PGAAR S(-118.44)AMDS(-109.59)PVPAS(-76.66)MFAPEPS(-7.55)S(7.55)PGAAR 0 0 1 0 O00178 O00178 O00178 GTPBP1 GTP-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 857.061828613281 3 780.672721 2338.99633 33601.3879156965 1.3735 0.0010722 97849 76.388 97850 76.389 857.394985449405 85.244 0.83567 85.244 84.84 85.676 0 124 28 6 0.908939305608031 0.00563257429460052 0.122415059254599 2.29E-08 1 19869 164.85 148.53 5 108520000 4022.7 4767.1 5273.8 4869.3 5973.6 4151.1 6496.3 5795.2 4720.9 16805 3811.2 4503.9 5248 4981.9 6026.4 4245.2 6538.9 6255.7 4733.4 15958 1 1 1 1 1 1 1 1 1 1 4066 35 3588 3813 4521 4521 58 SAMPFTASPASSTTAR 16 Oxidation (M),Phospho (STY) _SAM(ox)PFTAS(ph)PASSTTAR_ SAM(1)PFTASPASSTTAR SAMPFT(0.003)AS(0.995)PASS(0.002)TTAR SAM(133.61)PFTASPASSTTAR S(-54.73)AMPFT(-25.91)AS(25.91)PAS(-35.92)S(-27.43)T(-37.92)T(-53.08)AR 0 1 1 0 O00151 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.44140625 2 839.860752 1677.70695 31387.2911093458 1.1036 0.00092687 136430 114.58 136430 114.58 954.444210299358 47.641 0.40592 47.641 47.511 47.917 0 32 13 3 0.976713935470301 0.000863385642898914 0.0256699432166145 2.6732E-05 1 11054 133.61 117.43 7 16435000 14071 10723 15211 9596.7 8901.2 14524 10739 11607 10458 5720.4 13319 10123 15177 10002 9431.2 14313 10835 11928 10331 5655.1 1 1 1 1 1 1 1 1 1 1 4067 32 3589 3814 4522 4522 2 54 SAMPFTASPASSTTAR 16 Phospho (STY) _SAMPFTAS(ph)PASSTTAR_ SAMPFT(0.24)AS(0.76)PASSTTAR S(-67.1)AMPFT(-5.01)AS(5.01)PAS(-44.78)S(-54.26)T(-67.68)T(-80.9)AR 0 0 1 0 O00151 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 946.4482421875 2 831.863295 1661.71204 31640.9284971984 2.1922 0.0018236 137740 114.58 137750 114.59 946.449971446626 63.17 1.388 63.17 62.732 64.12 0 100 47 4 0.970436697485979 0.00404513455940999 0.129314359232888 1.4061E-22 1 14821 263.62 227.23 7 54447000 26388 16804 29907 17250 11069 29351 11451 18788 17780 18327 24983 15877 29683 17879 12357 28782 11811 19807 17275 17692 1 1 1 1 1 1 1 1 1 1 4068 32 3589 3815 4523 4523 54 SAPASPTHPGLMSPR 15 Phospho (STY) _SAPAS(ph)PTHPGLMSPR_ SAPAS(0.986)PT(0.014)HPGLMSPR S(-46)APAS(18.46)PT(-18.46)HPGLMS(-98.46)PR 0 0 1 0 P85037 P85037 P85037 FOXK1 Forkhead box protein K1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.632568359375 3 529.244602 1584.71198 40729.2079406599 0.5378 0.00028463 144330 76.388 144330 76.388 605.632317801085 45.538 0.61249 45.538 45.207 45.819 0 41 20 3 0.952571690120726 0.000899459307842434 0.00257826698440026 3.9524E-07 1 10477 157.73 127.66 4 38918000 15960 15698 15942 14575 13134 18397 15441 15502 15131 2314 15102 14823 16023 15095 13526 18238 15599 15731 14943 2537.7 1 1 1 1 1 1 1 1 1 1 4069 816 3590 3816 4524 4524 1308 SAPASPVQSPAK 12 Phospho (STY) _SAPAS(ph)PVQSPAK_ S(0.185)APAS(0.814)PVQS(0.001)PAK S(-6.44)APAS(6.44)PVQS(-29.33)PAK 0 0 1 0 P35612 P35612 P35612 ADD2 Beta-adducin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.971313476563 3 407.195466 1218.56457 42271.3949576708 1.7928 0.00073002 375190 152.78 375190 152.78 559.970725859868 41.442 0.57235 41.442 41.111 41.683 0 47 19 4 0.550310157096961 0.00109655346559446 0.0119225085043267 0.0069111 1 9449 80.737 61.096 3 6984200 18174 13277 14996 13926 8756.3 16501 8792.4 11523 12329 2771.6 17186 12546 15207 14300 9258.2 16368 9045 11834 12015 2876.5 1 1 1 1 1 1 1 1 1 1 4070 550 3591 3817 4525 4525 893 SAPATGGVK 9 Phospho (STY) _S(ph)APATGGVK_ S(1)APATGGVK S(60.8)APAT(-60.8)GGVK 0 0 1 0 Q71DI3;Q16695;P68431 Q71DI3 Q71DI3 HIST2H3A;HIST3H3;HIST1H3A Histone H3.2;Histone H3.1t;Histone H3.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.364685058594 2 434.202225 866.389898 37432.9079247909 2.7044 0.0011743 527780 229.16 527780 229.16 663.365548073201 38.99 0.37753 38.99 38.904 39.282 0 35 12 4 0.955891372382503 0.00838575775854648 0.189539334681925 0.00013331 1 8845 131.83 75.815 2 74035000 61057 137220 63365 136260 59009 55336 69549 88752 142880 13050 57784 129620 63639 138660 60358 59522 72297 88123 137870 14342 1 1 1 1 1 1 1 1 1 1 4071 790 3592 3818 4526 4526 1263 SAPPSPPPPGTR 12 Phospho (STY) _SAPPS(ph)PPPPGTR_ S(0.068)APPS(0.923)PPPPGT(0.009)R S(-11.35)APPS(11.35)PPPPGT(-19.9)R 0 0 1 0 Q9Y4H4 Q9Y4H4 Q9Y4H4 GPSM3 G-protein-signaling modulator 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 490.583251953125 3 414.195577 1239.5649 44846.0185798612 1.0121 0.00041921 184420 76.387 184420 76.387 490.582096450097 32.736 0.55399 32.736 32.5 33.054 0 48 18 3 0.941772328250386 0.00250726906953505 0.0243994828390987 0.035599 1 7320 47.545 13.367 3 19199000 13169 8792.7 13134 8574 10834 11235 11118 11311 8962.3 2238 12461 8304.9 13199 8859.7 11132 11148 11245 11410 8934.5 2369.1 1 1 1 1 1 1 1 1 1 1 4072 2282 3593 3819 4527 4527 4220;4221 SAPPSPPPPGTR 12 2 Phospho (STY) _S(ph)APPS(ph)PPPPGTR_ S(1)APPS(1)PPPPGTR S(44.29)APPS(40.62)PPPPGT(-40.62)R 0 0 2 0 Q9Y4H4 Q9Y4H4 Q9Y4H4 GPSM3 G-protein-signaling modulator 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 517.238586425781 3 440.851021 1319.53123 43695.9978001439 0.25118 0.00011073 173270 76.387 173270 76.388 517.238283147353 34.359 1.5669 34.359 33.497 35.064 0 74 53 2 0.643574098743246 0.000524871270561812 0.019491018215768 0.046199 1 7632 49.463 34.261 3 17336000 9797.8 8067 8998.3 8182.5 9117.8 9428.6 7971.6 9080.1 8146.9 2377.1 9268.3 7621.3 9106.1 8414.5 9229.6 9395.3 8174.3 9193.2 8031.1 2448.5 1 1 1 1 1 1 1 1 1 1 4073 2282 3593 3820 4528 4528 4220;4221 SAPSTGGVK 9 Phospho (STY) _S(ph)APSTGGVK_ S(1)APSTGGVK S(36.39)APS(-36.39)T(-41.8)GGVK 0 0 1 0 P84243 P84243 P84243 H3F3A Histone H3.3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.36376953125 2 442.199683 882.384812 38665.957167953 2.8403 0.001256 518230 229.16 518240 229.16 671.362276807256 38.296 0.46057 38.296 38.093 38.553 0 32 15 3 0.847678130141513 0.00110304669459405 0.0424005723674462 0.0045626 1 8669 93.561 29.264 3 15060000 17549 34736 16461 33285 18968 18028 18142 24898 33327 7503 16602 32806 16667 34019 19103 18851 18923 24935 32239 7641.2 1 1 1 1 1 1 1 1 1 1 4074 815 3594 3821 4529 4529 1303 SAPTAPTPPPPPPPATPR 18 Phospho (STY) _SAPTAPT(ph)PPPPPPPATPR_ S(0.001)APT(0.011)APT(0.988)PPPPPPPATPR S(-32.92)APT(-19.42)APT(19.42)PPPPPPPAT(-42.8)PR 0 0 1 0 Q14202 Q14202 Q14202 ZMYM3 Zinc finger MYM-type protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.026184082031 3 610.304626 1827.89205 38217.4236086338 0.96146 0.00058679 125160 76.387 125160 76.388 687.026300337267 48.552 1.3664 48.552 47.715 49.081 7.1054E-15 102 46 4 0.534907359728234 0.000545642373337724 0.00416871745139009 0.0062369 2 11290 90.729 72.417 4 34369000 20686 24450 20876 24499 23852 24273 25600 24099 24413 13783 19575 23097 21050 25148 24053 24364 25942 24595 24139 13536 2 2 2 2 2 2 2 2 2 2 4075 1000 3595 3822 4530;4531 4531 4553 SAQGSSSPVPSMVQKSPR 18 Phospho (STY) _SAQGSSSPVPSMVQKS(ph)PR_ SAQGSSSPVPSMVQKS(1)PR S(-135.31)AQGS(-111.64)S(-105.98)S(-95.96)PVPS(-48.65)MVQKS(48.65)PR 0 0 1 1 P35658 P35658 P35658 NUP214 Nuclear pore complex protein Nup214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.075744628906 3 637.299435 1908.87648 34028.0755781486 1.9783 0.0012608 239720 152.78 239730 152.78 790.410803864583 52.441 0.48199 52.441 52.183 52.665 -7.1054E-15 45 16 4 0.993213914329434 0.00185042795172786 0.0299993748683326 3.2729E-08 1 12204 171.19 156.31 6 22341000 12719 27909 13781 28607 8477.2 13746 8235.6 18015 30850 11576 12039 26369 13750 29092 8933.8 14516 9014.1 18253 29481 11317 1 1 1 1 1 1 1 1 1 1 4076 551 3596 3823 4532 4532 895 SAQWLDQEEAPK 12 Phospho (STY) _S(ph)AQWLDQEEAPK_ S(1)AQWLDQEEAPK S(133.78)AQWLDQEEAPK 0 0 1 0 Q53H47 Q53H47 Q53H47 SETMAR Histone-lysine N-methyltransferase SETMAR;Histone-lysine N-methyltransferase;Transposon Hsmar1 transposase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.324340820313 3 494.548456 1480.62354 39642.7479580525 1.6965 0.00083902 308920 152.78 308920 152.78 647.323433568823 70.333 0.55045 70.333 69.988 70.538 -1.4211E-14 38 18 3 0.876467104172117 0.00205709900458583 0.0365321792034609 2.0341E-05 1 16485 133.78 116.7 1 12875000 6702 7949.3 8062.2 9686.3 8242.7 7463.2 8832.3 9259.1 9728.3 6579.2 6346.9 7519.3 8043.3 9803.9 8363.3 7614.9 8986.7 9416.2 9560.9 6409.4 1 1 1 1 1 1 1 1 1 1 4077 1152 3597 3824 4533 4533 2000 SASADNLTLPR 11 Phospho (STY) _SAS(ph)ADNLTLPR_ S(0.223)AS(0.777)ADNLTLPR S(-5.43)AS(5.43)ADNLT(-42.08)LPR 0 0 1 0 Q8ND76 Q8ND76 Q8ND76 CCNY Cyclin-Y MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.366455078125 2 612.784642 1223.55473 36627.5589989553 1.5575 0.00095442 186980 114.58 186990 114.58 727.365576480164 59.034 1.4733 59.034 58.291 59.764 -7.1054E-15 124 50 4 0.887092211620237 0.00532109998568223 0.118887822283433 0.0001065 1 13785 125.29 86.489 3 139980000 27976 38532 28047 38385 53145 28202 48205 41536 43737 22414 26473 36399 28535 39258 52376 28932 49184 41822 43345 22067 1 1 1 1 1 1 1 1 1 1 4078 1503 3598 3825 4534 4534 2762 SASAPAAEGEGTPTQPASEK 20 Acetyl (Protein N-term),Phospho (STY) _(ac)SASAPAAEGEGT(ph)PTQPASEK_ SASAPAAEGEGT(0.859)PT(0.141)QPASEK S(-50.07)AS(-50.07)APAAEGEGT(7.83)PT(-7.83)QPAS(-39.53)EK 1 0 1 0 P35659 P35659 P35659 DEK Protein DEK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 746.343566894531 3 669.95628 2006.84701 35789.6617440128 1.81 0.0012127 114020 76.388 114020 76.389 746.344567515106 41.7 0.43106 41.7 41.424 41.855 7.1054E-15 26 14 3 0.937153057912721 0.000913904833565153 0.00757824799633877 6.9818E-05 1 9537 86.551 74.406 5 12032000 11922 9329.5 12002 10267 12558 11902 11801 11132 9998 7177.6 11282 8818.6 12086 10511 12699 11861 11999 11412 9941.5 7016.2 1 1 1 1 1 1 1 1 1 1 4079 552 3599 3826 4535 4535 4453 SASAPAAEGEGTPTQPASEKEPEMPGPR 28 Acetyl (Protein N-term),Phospho (STY) _(ac)SASAPAAEGEGT(ph)PTQPASEKEPEMPGPR_ S(0.079)AS(0.079)APAAEGEGT(0.823)PT(0.02)QPASEKEPEMPGPR S(-10.19)AS(-10.19)APAAEGEGT(10.19)PT(-16.22)QPAS(-43.79)EKEPEMPGPR 1 0 1 1 P35659 P35659 P35659 DEK Protein DEK MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1044.15173339844 3 967.758459 2900.25355 NaN NaN NaN NaN NaN NaN NaN NaN 55.184 1 55.184 54.684 55.684 0 NaN NaN NaN 0.0048024 1 12878 91.873 75.732 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4080 552 3600 3827 4536 4536 4453 SASASHQADIK 11 Phospho (STY) _S(ph)ASASHQADIK_ S(1)ASASHQADIK S(38.33)AS(-38.33)AS(-49.03)HQADIK 0 0 1 0 Q14739 Q14739 Q14739 LBR Lamin-B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.618713378906 3 398.843203 1193.50778 42298.4018898721 0.67734 0.00027015 383050 152.78 383050 152.78 551.618515652777 34.15 0.84455 34.15 33.676 34.52 0 97 28 5 0.884618763892274 0.00121595329470609 0.0112943035834627 9.5475E-08 1 7585 171.81 131.89 3 268670000 9971.5 10228 9072.9 10635 6949.5 9617.8 10549 11902 11327 2269.2 9432.2 9664.7 9168.4 10878 7229.4 9718.7 10586 11918 11143 2412.2 1 1 1 1 1 1 1 1 1 1 4081 1026 3601 3828 4537 4537 1756;1757 SASDSGCDPASK 12 Phospho (STY) _S(ph)ASDSGCDPASK_ S(1)ASDSGCDPASK S(38.76)AS(-38.76)DS(-69.6)GCDPAS(-182.14)K 0 0 1 0 Q7LBC6 Q7LBC6 Q7LBC6 KDM3B Lysine-specific demethylase 3B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.388793945313 2 631.223757 1260.43296 33055.0686129855 1.7931 0.0011318 363050 229.16 363050 229.16 860.386685840399 33.906 0.45749 33.906 33.648 34.105 7.1054E-15 41 15 3 0.949941828413161 0.000889306379592438 0.0173246335430669 6.4714E-23 1 7573 273.34 224.74 4 17443000 19668 17768 18950 17822 14139 17555 15200 16851 19348 2799 18609 16785 19066 18292 14651 17604 15534 17015 18915 3025.6 1 1 1 1 1 1 1 1 1 1 4082 1322 3602 3829 4538 4538 2368 SASDSGCDPASKK 13 Phospho (STY) _S(ph)ASDSGCDPASKK_ S(0.966)AS(0.034)DSGCDPASKK S(14.54)AS(-14.54)DS(-37.98)GCDPAS(-71.18)KK 0 0 1 1 Q7LBC6 Q7LBC6 Q7LBC6 KDM3B Lysine-specific demethylase 3B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.013366699219 3 463.849918 1388.52792 37789.0418800936 1.7791 0.00082524 494040 229.16 494050 229.16 693.012270818229 36.614 0.69251 36.614 36.233 36.925 0 65 23 4 0.67233981356932 0.00217991965998523 0.0188525867291532 0.0081331 1 8293 81.346 65.754 4 44391000 30078 27976 30697 27304 22809 32621 25477 30019 34112 3912.2 28464 26424 30783 28162 23658 32435 26042 30330 33292 4378.6 1 1 1 1 1 1 1 1 1 1 4083 1322 3603 3830 4539 4539 2368 SASDTNLQK 9 Phospho (STY) _SAS(ph)DTNLQK_ S(0.006)AS(0.98)DT(0.014)NLQK S(-21.89)AS(18.41)DT(-18.41)NLQK 0 0 1 0 A0JNW5 A0JNW5 A0JNW5 UHRF1BP1L UHRF1-binding protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 751.387390136719 2 522.223886 1042.43322 36205.0961623432 2.3284 0.0012159 438820 229.16 438820 229.16 751.386609153387 42.004 0.79744 42.004 41.569 42.366 7.1054E-15 43 27 2 0.550088994154289 0.00173261405161818 0.0470280798763402 0.0077077 1 9582 87.241 52.855 3 28125000 42139 30433 43430 34595 28407 44096 26887 30110 31703 8748 39879 28773 43470 35420 29697 43616 27573 31008 31077 8934.2 1 1 1 1 1 1 1 1 1 1 4084 2 3604 3831 4540 4540 4 SASITNLSLDR 11 Phospho (STY) _SAS(ph)ITNLSLDR_ S(0.001)AS(0.985)IT(0.014)NLSLDR S(-29.31)AS(18.44)IT(-18.44)NLS(-98.83)LDR 0 0 1 0 Q9Y2I7 Q9Y2I7 Q9Y2I7 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.380798339844 2 628.797749 1255.58095 36238.9298725022 2.053 0.0012909 182220 114.58 182220 114.58 743.379120035583 66.489 0.75006 66.489 66.2 66.95 0 72 25 5 0.995701218598096 0.00343118789312569 0.123361096398525 2.2663E-21 1 15593 268.66 212.82 4 71161000 25867 15209 26518 15419 28552 24594 29371 24874 15308 16395 24479 14369 26691 15966 28852 24277 29473 25434 15701 16014 1 1 1 1 1 1 1 1 1 1 4085 2247 3605 3832 4541 4541 4148 SASLLSLQTELLLDLVAEAQSR 22 Phospho (STY) _S(ph)ASLLSLQTELLLDLVAEAQSR_ S(0.598)AS(0.402)LLSLQTELLLDLVAEAQSR S(1.73)AS(-1.73)LLS(-31.37)LQT(-125.56)ELLLDLVAEAQS(-300.81)R 0 0 1 0 Q9Y4H4 Q9Y4H4 Q9Y4H4 GPSM3 G-protein-signaling modulator 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.813598632813 3 813.091038 2436.25129 32945.8176909595 1.8789 0.0015277 93947 76.387 93949 76.389 889.812647218521 104.47 0.52969 104.47 104.38 104.91 0 68 18 7 0.993863277144011 0.10245890910806 1 2.8438E-32 1 24595 308.16 283.29 5 159260000 1967.5 1330.7 2910.7 1370.1 3876.7 2513.8 3016.1 3263.2 1223.1 7202.2 1865.3 1257.3 2886.9 1422.7 3863.2 2491.6 3062.3 3461.2 1282.9 6857.3 1 1 1 1 1 1 1 1 1 1 4086 2282 3606 3833 4542 4542 4222 SASLNSKPSSLR 12 Phospho (STY) _SAS(ph)LNSKPSSLR_ S(0.047)AS(0.938)LNS(0.009)KPS(0.003)S(0.003)LR S(-13.03)AS(13.03)LNS(-20.39)KPS(-24.31)S(-24.31)LR 0 0 1 1 Q12912 Q12912 Q12912 LRMP Lymphoid-restricted membrane protein;Processed lymphoid-restricted membrane protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.661010742188 3 442.885291 1325.63404 35380.0239104121 1.1425 0.00050598 344960 152.78 344960 152.78 595.662723834474 46.634 0.33525 46.634 46.436 46.771 0 28 11 3 0.575436759511139 0.00209346976274674 0.0281572663127018 0.035664 2 10797 47.217 26.755 5 31052000 72747 34177 82920 40022 47072 77176 49022 50549 34073 11011 68876 32319 82475 41334 49898 75386 49397 52068 34254 11538 2 2 2 2 2 2 2 2 2 2 4087 913 3607 3834 4543;4544 4544 1508;1509 SASLNSKPSSLRR 13 2 Phospho (STY) _SAS(ph)LNSKPSS(ph)LRR_ S(0.399)AS(0.6)LNS(0.002)KPS(0.091)S(0.908)LRR S(-1.8)AS(1.8)LNS(-28.03)KPS(-10.1)S(10.1)LRR 0 0 2 2 Q12912 Q12912 Q12912 LRMP Lymphoid-restricted membrane protein;Processed lymphoid-restricted membrane protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.350891113281 3 521.574438 1561.70149 38461.5626007502 1.3731 0.0007162 292910 152.78 292910 152.78 674.350455524036 40.597 0.50531 40.597 40.351 40.857 0 35 16 4 0.808213200486403 0.00286230286372048 0.0388832888546921 0.01536 1 9233 64.843 51.18 10 24770000 22392 13024 22585 14605 19333 23549 20376 18479 15270 7547.9 21189 12312 22693 15043 19821 23156 20551 18959 15284 7534.9 1 1 1 1 1 1 1 1 1 1 4088 913 3608 3835 4545 4545 1508;1509 SASLSSLLITPFPSPNSSLTR 21 Phospho (STY) _SASLS(ph)SLLITPFPSPNSSLTR_ S(0.063)AS(0.324)LS(0.596)S(0.017)LLITPFPSPNSSLTR S(-9.73)AS(-2.65)LS(2.65)S(-15.47)LLIT(-68.8)PFPS(-96.62)PNS(-111.7)S(-111.7)LT(-110.08)R 0 0 1 0 Q8TF40 Q8TF40 Q8TF40 FNIP1 Folliculin-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.105102539063 3 752.382153 2254.12463 36077.4895071643 1.0505 0.0007904 101530 76.387 101530 76.388 829.103064131561 101.44 0.22793 101.44 101.3 101.53 0 16 7 3 0.872289136095885 0.00220840611840751 0.100098288300339 1.3456E-08 1 23850 171.84 149.27 9 18019000 4884.3 5322.9 7130 5686.2 5333.2 5679.6 4722.2 4970.7 5468.6 30933 4630.3 5030.4 7027.2 5816.2 5510.3 5742.6 4856.6 5945.5 5364.2 29243 1 1 1 1 1 1 1 1 1 1 4089 1557 3609 3836 4546 4546 2864 SASLVTR 7 Phospho (STY) _SAS(ph)LVTR_ S(0.022)AS(0.978)LVTR S(-16.42)AS(16.42)LVT(-37.09)R 0 0 1 0 Q9H2K8 Q9H2K8 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 521.778869628906 2 407.196943 812.379333 43303.0641312819 1.1565 0.00047093 281390 114.58 281390 114.58 521.778482683932 41.308 0.6303 41.308 40.938 41.569 7.1054E-15 45 21 3 0.948246773560548 0.00334822086735494 0.0820166519138586 0.0053044 1 9406 96.331 35.895 3 47206000 35462 13691 32024 14408 23401 32423 24928 23200 13390 2318.5 33543 12937 32341 15039 24267 31584 24985 23698 13701 2720.1 1 1 1 1 1 1 1 1 1 1 4090 1920 3610 3837 4547 4547 3486 SASNKSPLVLEANR 14 Phospho (STY) _SASNKS(ph)PLVLEANR_ S(0.08)AS(0.355)NKS(0.566)PLVLEANR S(-8.52)AS(-2.03)NKS(2.03)PLVLEANR 0 0 1 1 Q92560 Q92560 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.704406738281 3 522.594288 1564.76104 38235.7496613254 1.9977 0.001044 292340 152.78 292340 152.78 675.369156862708 53.999 0.52408 53.999 53.744 54.268 7.1054E-15 45 17 4 0.954084904610576 0.00270149179068595 0.0352765929478593 0.0046221 1 12598 88.755 67.221 3 14152000 16139 18899 16111 20087 14222 16212 15072 17360 19866 5696.5 15271 17860 16203 20489 14561 16448 15432 17541 19399 5765.7 1 1 1 1 1 1 1 1 1 1 4091 1600 3611 3838 4548 4548 2938 SASPDDDLGSSNWEAADLGNEER 23 Unmodified _SASPDDDLGSSNWEAADLGNEER_ 0 0 0 0 O00193 O00193 O00193 SMAP Small acidic protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.067932128906 3 812.345833 2434.01567 33580.9598367148 1.3814 0.0011222 94034 76.388 94035 76.389 889.068192984093 68.779 0.50387 68.779 68.499 69.003 0 46 16 4 0.982305542512498 0.00163736648438707 0.0179149500326505 9.4041E-13 1 16137 204.5 169.37 1 15575000 10460 11189 11537 9692.3 12276 11708 13842 12615 11983 18808 9901.9 10561 11567 10076 12434 11692 13964 13185 11903 18002 1 1 1 1 1 1 1 1 1 1 4092 36 3612 3839 4549 4549 SASPDDDLGSSNWEAADLGNEER 23 Phospho (STY) _SAS(ph)PDDDLGSSNWEAADLGNEER_ S(0.008)AS(0.992)PDDDLGSSNWEAADLGNEER S(-21.04)AS(21.04)PDDDLGS(-80.28)S(-94.62)NWEAADLGNEER 0 0 1 0 O00193 O00193 O00193 SMAP Small acidic protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1373.08410644531 2 1257.99828 2513.982 28100.5407903692 1.4862 0.0018696 91082 114.58 91084 114.58 1373.08121253224 73.298 0.76964 73.298 73.069 73.839 0 50 26 3 0.898538411381002 0.000449412769054111 0.00890319737631274 5.4085E-24 1 17250 253.83 219.45 4 10364000 2100.9 2399.5 1832.5 2545.1 3449.9 2396.8 2407.2 2808.1 2825.3 7280.5 1987 2267.5 1878.4 2601.9 3391.1 2427.9 2511.8 3020.2 2770 6920.4 1 1 1 1 1 1 1 1 1 1 4093 36 3612 3840 4550 4550 59 SASPHDVDLCLVSPCEFEHR 20 Phospho (STY) _S(ph)ASPHDVDLCLVSPCEFEHR_ S(0.5)AS(0.5)PHDVDLCLVSPCEFEHR S(0)AS(0)PHDVDLCLVS(-131.96)PCEFEHR 0 0 1 0 Q66K74 Q66K74 Q66K74 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.065795898438 3 812.343375 2434.00829 32214.2928055013 1.605 0.0013038 94032 76.386 94033 76.387 889.064595780923 76.545 0.54983 76.545 76.304 76.854 0 33 18 3 0.950790602296564 0.00104296531890244 0.0285813134122863 5.3634E-08 1 17946 163.71 142.25 3 7241300 5283.2 4874.7 5079.9 5335.1 5330.9 5848.3 4366.1 4933.6 5549 15420 4998.5 4607.6 5128.2 5458 5382.4 5856.7 4523 5448.8 5425 14634 1 1 1 1 1 1 1 1 1 1 4094 1224 3613 3841 4551 4551 2160;2161 SASPPKAK 8 Phospho (STY) _SAS(ph)PPKAK_ S(0.012)AS(0.988)PPKAK S(-19.01)AS(19.01)PPKAK 0 0 1 1 P52701 P52701 P52701 MSH6 DNA mismatch repair protein Msh6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 518.307739257813 3 289.144154 864.410633 42614.4210006046 0.85097 0.00024605 792560 229.16 792560 229.16 518.307358998662 35.249 1.1014 35.249 34.52 35.622 0 119 36 4 0.974543392139364 0.0112514194186333 0.113053050232866 0.025299 1 7910 54.094 34.307 2 105130000 59352 102050 60771 102870 110410 59859 113870 104850 120560 4311.8 56168 96407 61726 104880 109170 62492 115930 103560 118680 6486.8 1 1 1 1 1 1 1 1 1 1 4095 695 3614 3842 4552 4552 1167 SASPSNIK 8 Phospho (STY) _SAS(ph)PSNIK_ S(0.011)AS(0.987)PS(0.002)NIK S(-19.4)AS(19.4)PS(-27.47)NIK 0 0 1 0 Q9NRH2 Q9NRH2 Q9NRH2 SNRK SNF-related serine/threonine-protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.365173339844 2 442.199683 882.384812 38404.823620906 2.6012 0.0011503 518230 229.16 518240 229.16 671.363014056256 42.089 0.51096 42.089 41.826 42.337 0 49 17 4 0.82753865009835 0.00209797655733081 0.0561839220298367 0.00099624 1 9598 115.41 61.346 3 24443000 30008 23994 31916 21823 33391 31861 32862 28951 24895 6538.7 28402 22654 32045 22701 33783 31464 33258 29350 24902 6827 1 1 1 1 1 1 1 1 1 1 4096 2017 3615 3843 4553 4553 3666 SASPYHGFTIVNR 13 Phospho (STY) _S(ph)ASPYHGFTIVNR_ S(0.794)AS(0.206)PYHGFTIVNR S(5.86)AS(-5.86)PY(-40.86)HGFT(-63.31)IVNR 0 0 1 0 Q9NPI6 Q9NPI6 Q9NPI6 DCP1A mRNA-decapping enzyme 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 586.624816894531 3 510.236324 1527.68714 40783.1163278916 2.1676 0.001106 149710 76.387 149710 76.388 586.957226133314 63.105 0.382 63.105 62.932 63.314 -7.1054E-15 29 12 3 0.958252696389538 0.00221138701336383 0.0421190015045141 3.2375E-05 1 14819 131.72 102.98 4 9147100 6787.3 6101.2 5798.5 5367.1 6926.9 7352.4 6454.3 6654.1 5756.6 8668.4 6418.9 5759.4 5908.5 5587.5 6955.5 7288.6 6573.5 6962.8 5709.6 8316.3 1 1 1 1 1 1 1 1 1 1 4097 1998 3616 3844 4554 4554 3628 SASQDCIETTPGAQEGK 17 Phospho (STY) _SAS(ph)QDCIETTPGAQEGK_ S(0.162)AS(0.838)QDCIETTPGAQEGK S(-7.14)AS(7.14)QDCIET(-52.46)T(-72.55)PGAQEGK 0 0 1 0 Q99767 Q99767 Q99767 APBA2 Amyloid beta A4 precursor protein-binding family A member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.03173828125 3 620.255672 1857.74519 35671.7679364656 1.7264 0.0010708 246310 152.78 246310 152.78 773.031638659396 47.796 0.31717 47.796 47.629 47.946 0 33 10 4 0.837453403790063 0.00205209543375514 0.0453031781194501 1.3613E-05 1 11077 133.68 113.02 4 20906000 18798 19958 18231 19761 19665 19986 17828 18727 22713 22084 17785 18853 18404 20306 19850 20048 18369 19499 22204 21228 1 1 1 1 1 1 1 1 1 1 4098 1791 3617 3845 4555 4555 3300 SASQDCIETTPGAQEGKK 18 Phospho (STY) _SAS(ph)QDCIETTPGAQEGKK_ S(0.001)AS(0.998)QDCIET(0.001)TPGAQEGKK S(-32.68)AS(29.43)QDCIET(-29.43)T(-43.23)PGAQEGKK 0 0 1 1 Q99767 Q99767 Q99767 APBA2 Amyloid beta A4 precursor protein-binding family A member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 892.453369140625 3 662.953993 1985.84015 33893.9003949596 1.4466 0.00095902 345670 229.16 345670 229.16 892.451760752982 46.589 0.33532 46.589 46.464 46.799 0 34 11 4 0.960792866262355 0.0025561063567517 0.0223027647233265 9.2484E-11 1 10763 179.79 158.5 4 21504000 24608 23850 24631 21919 23486 24690 23174 22867 23842 9801.4 23286 22519 24786 22668 23898 24620 23622 23303 23497 9758.4 1 1 1 1 1 1 1 1 1 1 4099 1791 3618 3846 4556 4556 3300 SASQSSLDKLDQELK 15 Phospho (STY) _SASQSS(ph)LDKLDQELK_ SASQS(0.022)S(0.978)LDKLDQELK S(-97.39)AS(-68)QS(-16.41)S(16.41)LDKLDQELK 0 0 1 1 O60271 O60271 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.107421875 3 576.939901 1727.79787 34980.5850399542 2.4238 0.0013984 397200 229.16 397210 229.16 806.437670137746 71.761 0.52573 71.761 71.491 72.017 0 69 17 5 0.99600043760466 0.00463427438513115 0.0418281069573449 5.5534E-23 1 16812 270.95 232.57 4 52428000 11184 33461 13107 32841 15911 12529 16390 21588 36468 10301 10590 31606 13123 33431 16007 13598 17211 21614 35131 10199 1 1 1 1 1 1 1 1 1 1 4100 139 3619 3847 4557 4557 236 SASSGAEGDVSSER 14 Phospho (STY) _SASS(ph)GAEGDVSSER_ SAS(0.227)S(0.773)GAEGDVSSER S(-49.81)AS(-5.31)S(5.31)GAEGDVS(-97.78)S(-113.28)ER 0 0 1 0 Q8TEA8 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.357727050781 2 709.7752 1417.53585 35196.6962744896 2.355 0.0016715 161430 114.58 161440 114.58 824.356989877162 28.683 0.22788 28.683 28.523 28.751 0 12 7 2 0.911380579820981 0.000577852031313604 0.00906761043290225 3.9053E-23 1 6382 280.5 242.31 5 4743600 6681 6326.5 6000.7 5289.1 6524.6 7314.4 6722.3 6576.6 6763.7 2215.1 6319.4 5970.5 6088.3 5526.6 6593.1 7236.2 6834.4 6692.1 6672 2238 1 1 1 1 1 1 1 1 1 1 4101 1550 3620 3848 4558 4558 2844 SASSGAEGDVSSEREP 16 Phospho (STY) _SASS(ph)GAEGDVSSEREP_ SAS(0.059)S(0.941)GAEGDVSSEREP S(-38.13)AS(-12.06)S(12.06)GAEGDVS(-83.93)S(-105.16)EREP 0 0 1 1 Q8TEA8 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 937.408203125 2 822.822878 1643.6312 32589.0038766597 1.5084 0.0012412 139250 114.58 139260 114.58 937.404120492651 35.119 0.61318 35.119 34.832 35.445 0 65 20 4 0.977533957081619 0.000926274072483785 0.0148506479805924 6.7235E-32 1 7857 320.05 299.59 5 33965000 11840 11964 10634 10972 15367 13321 17728 14373 12182 1885.9 11200 11297 10839 11364 15343 13264 17780 14434 12256 2108.5 1 1 1 1 1 1 1 1 1 1 4102 1550 3621 3849 4559 4559 2844 SASSLLEQRPK 11 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)ASSLLEQRPK_ S(0.985)AS(0.013)S(0.002)LLEQRPK S(18.68)AS(-18.68)S(-28.01)LLEQRPK 1 0 1 1 Q9Y5A9 Q9Y5A9 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.90869140625 2 669.326674 1336.6388 35649.4957001321 1.782 0.0011927 171190 114.58 171190 114.58 783.907790710193 63.673 0.46651 63.673 63.372 63.839 0 65 15 5 0.997007123958794 0.00533894545844721 0.151778277714037 2.1984E-10 1 14920 133.57 108.8 3 109260000 17093 34133 18528 33987 21196 17708 20915 22537 34045 13507 16180 32243 18606 34644 21361 18562 21663 22826 33035 13240 1 1 1 1 1 1 1 1 1 1 4103 2291 3622 3850 4560 4560 4233 SASTEKLEQGTSALIR 16 Phospho (STY) _SAS(ph)TEKLEQGTSALIR_ S(0.381)AS(0.497)T(0.122)EKLEQGTSALIR S(-1.16)AS(1.16)T(-6.09)EKLEQGT(-40.27)S(-39.15)ALIR 0 0 1 1 Q8IWC1 Q8IWC1 Q8IWC1 MAP7D3 MAP7 domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.071655273438 3 590.959296 1769.85606 36525.5413021357 2.2328 0.0013195 258520 152.78 258520 152.78 743.734110448753 69.434 0.72548 69.434 69.207 69.932 0 47 24 3 0.96013386500712 0.00217148322108668 0.022464988052613 0.0059804 1 16286 85.062 69.296 5 10981000 13318 10251 13228 11661 9071.2 12358 9439 11110 9992.9 9822.5 12602 9691.9 13275 11898 9456.7 12359 9605.6 11489 9836.5 9506.2 1 1 1 1 1 1 1 1 1 1 4104 1415 3623 3851 4561 4561 2578 SASVNKEPVSLPGIMR 16 Oxidation (M),Phospho (STY) _SAS(ph)VNKEPVSLPGIM(ox)R_ SASVNKEPVSLPGIM(1)R S(0.117)AS(0.883)VNKEPVSLPGIMR SASVNKEPVSLPGIM(87.77)R S(-8.79)AS(8.79)VNKEPVS(-37.28)LPGIMR 0 1 1 1 Q8WWI1 Q8WWI1 Q8WWI1 LMO7 LIM domain only protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.069885253906 3 594.293622 1779.85904 36998.0951058532 2.3655 0.0014058 257070 152.78 257070 152.78 747.403401530884 68.105 0.73261 68.105 67.794 68.527 0 67 24 4 0.936668878391437 0.00347044864688561 0.148810523511826 0.008946 1 15981 87.772 68.697 3 22610000 22156 6534.1 21548 7625.9 8979.4 22107 10539 14311 6761.9 9720.1 20963 6178.8 21582 7996.1 9872.9 21433 10549 14950 6832.2 9483.9 1 1 1 1 1 1 1 1 1 1 4105 1575 3624 3852 4562 4562 185 2889 SASVNKEPVSLPGIMR 16 Phospho (STY) _SAS(ph)VNKEPVSLPGIMR_ S(0.01)AS(0.99)VNKEPVSLPGIMR S(-19.84)AS(19.84)VNKEPVS(-75.62)LPGIMR 0 0 1 1 Q8WWI1 Q8WWI1 Q8WWI1 LMO7 LIM domain only protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.739135742188 3 588.961983 1763.86412 36661.7677607905 2.0758 0.0012226 259400 152.78 259400 152.78 742.072024734195 78.503 0.90141 78.503 78.176 79.078 -1.4211E-14 130 30 7 0.870355539162803 0.00386643158320398 0.11601686972821 2.4924E-07 1 18362 160.57 132.85 3 54451000 21810 5708.3 23821 5526.9 7428.8 21502 9605.2 12072 5409 8317.1 20645 5391.4 23674 5942.6 8533.5 20737 9557.9 12726 5515 8110.9 1 1 1 1 1 1 1 1 1 1 4106 1575 3624 3853 4563 4563 2889 SASVSSISLTK 11 Phospho (STY) _SAS(ph)VSSISLTK_ S(0.009)AS(0.917)VS(0.05)S(0.018)IS(0.006)LTK S(-20.23)AS(12.62)VS(-12.62)S(-16.97)IS(-21.83)LT(-41.05)K 0 0 1 0 Q07889 Q07889 Q07889 SOS1 Son of sevenless homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.951721191406 2 580.283944 1158.55333 34862.2954049355 2.2106 0.0012828 394920 229.17 394920 229.17 809.951080355045 67.644 0.97184 67.644 67.034 68.005 0 90 32 4 0.993202213595299 0.00223668965778314 0.131398136537749 0.018686 1 15874 66.393 44.997 6 20706000 21900 18635 21888 18717 28328 20083 31808 26387 21547 18969 20723 17604 22126 19235 28406 20184 31929 26796 21696 18472 1 1 1 1 1 1 1 1 1 1 4107 883 3625 3854 4564 4564 1432 SASWGSADQLK 11 Phospho (STY) _SAS(ph)WGSADQLK_ S(0.096)AS(0.899)WGS(0.006)ADQLK S(-9.73)AS(9.73)WGS(-22.04)ADQLK 0 0 1 0 Q86VQ1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.286926269531 3 410.511454 1228.51253 41256.1939193017 1.7819 0.00073149 372160 152.78 372160 152.78 563.286528909119 67.886 0.62835 67.886 67.615 68.243 0 65 20 4 0.96557621834225 0.00396505975894225 0.0424248808498414 1.1723E-10 1 15923 202.13 35.985 3 33127000 12884 9164.7 11895 9386.9 5475.1 12944 5052.7 9749 8515.8 2161.5 12188 8658.9 11955 9681.8 5932.5 12780 5258.3 9967.9 8255.7 2261 1 1 1 1 1 1 1 1 1 1 4108 1382 3626 3855 4565 4565 2506 SASWGSTDHRK 11 Phospho (STY) _SAS(ph)WGSTDHRK_ S(0.011)AS(0.855)WGS(0.06)T(0.074)DHRK S(-18.88)AS(10.65)WGS(-11.55)T(-10.65)DHRK 0 0 1 1 Q9C073 Q9C073 Q9C073 FAM117A Protein FAM117A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.630187988281 3 437.854103 1310.54048 41967.3430167167 1.2725 0.00055716 348920 152.78 348920 152.78 590.629036522446 35.564 0.40707 35.564 35.33 35.737 0 38 13 4 0.866693594678186 0.00171618976964603 0.0359036151190051 0.010235 1 7983 73.834 38.177 4 16362000 10992 16090 12660 14913 14796 10941 33135 21994 15985 2104.2 10408 15193 12713 15320 15132 11286 32378 21696 16499 2490.4 1 1 1 1 1 1 1 1 1 1 4109 1882 3627 3856 4566 4566 3424 SASWGSTDQLK 11 Phospho (STY) _SAS(ph)WGSTDQLK_ S(0.001)AS(0.995)WGS(0.003)T(0.001)DQLK S(-29.71)AS(24.8)WGS(-24.8)T(-32.07)DQLK 0 0 1 0 Q6P1L5 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 859.432067871094 2 630.268825 1258.5231 33213.8785232834 1.4025 0.00088393 363600 229.16 363600 229.16 859.431454814098 65.973 0.60053 65.973 65.659 66.26 0 45 19 3 0.847680629212291 0.00184774518844525 0.0528233485773414 5.4656E-10 1 15468 182.03 136.03 4 28400000 20139 20285 19366 19114 25664 18837 26374 21733 18672 13843 19054 19156 19624 19693 25675 18956 26602 22105 18750 13538 1 1 1 1 1 1 1 1 1 1 4110 1255 3628 3857 4567 4567 2223 SASYPCAAPR 10 Phospho (STY) _SAS(ph)YPCAAPR_ S(0.093)AS(0.905)Y(0.002)PCAAPR S(-9.87)AS(9.87)Y(-26.09)PCAAPR 0 0 1 0 Q7Z3C6 Q7Z3C6 Q7Z3C6 ATG9A Autophagy-related protein 9A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.81640625 2 580.233731 1158.45291 37801.7669725682 2.136 0.0012394 197470 114.58 197480 114.58 694.815171500253 38.385 0.42652 38.385 38.183 38.61 0 36 14 3 0.55248861719295 0.00106680521456901 0.0319060163951549 0.0042309 1 8719 93.928 77.47 3 18432000 27903 22782 30941 20790 28342 32644 30038 30477 22747 7993.4 26415 21510 30953 21659 28932 32179 30295 30895 22753 8232.1 1 1 1 1 1 1 1 1 1 1 4111 1331 3629 3858 4568 4568 2397 SASYPCAAPRPGAPETTALHGGFQR 25 Phospho (STY) _SAS(ph)YPCAAPRPGAPETTALHGGFQR_ S(0.019)AS(0.981)YPCAAPRPGAPETTALHGGFQR S(-17.03)AS(17.03)Y(-92.86)PCAAPRPGAPET(-75.64)T(-82.74)ALHGGFQR 0 0 1 1 Q7Z3C6 Q7Z3C6 Q7Z3C6 ATG9A Autophagy-related protein 9A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.101257324219 4 670.558797 2678.20608 36527.3524072302 1.2591 0.00084432 85436 57.29 85438 57.291 728.100033906894 55.517 0.63942 55.517 55.162 55.801 0 50 21 3 0.700979238249394 0.00324908298418327 0.0316926305983357 1.2912E-17 1 12966 223.86 185.66 5 38303000 8678.3 12661 9147.1 10752 14621 11149 18024 14210 11916 7239.3 8213.7 11949 9257.1 11163 14557 11209 18016 14353 12017 7145.5 1 1 1 1 1 1 1 1 1 1 4112 1331 3630 3859 4569 4569 2397 SATDADVVNSGWLVVGK 17 Phospho (STY) _S(ph)ATDADVVNSGWLVVGK_ S(0.5)AT(0.5)DADVVNSGWLVVGK S(0)AT(0)DADVVNS(-75.91)GWLVVGK 0 0 1 0 Q92538 Q92538 Q92538 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.729309082031 3 599.952141 1796.83459 38550.9775060056 1.7092 0.0010254 254650 152.78 254650 152.78 753.061276412433 99.024 0.43099 99.024 98.72 99.151 0 25 14 2 0.897762868330884 0.00101658573155984 0.099580028547368 2.4259E-07 1 22952 154.6 135.02 3 4845300 3197.2 3727.6 3827.2 2669.1 3013.1 3481.1 3450.7 4469.5 3322.2 34719 3027.7 3515.3 3808.4 2818.2 3111.8 3530.8 3488 5491.1 3283.4 32796 1 1 1 1 1 1 1 1 1 1 4113 1596 3631 3860 4570 4570 2932;4710 SATDGNTSTTPPTSAK 16 Phospho (STY) _SATDGNTSTT(ph)PPTSAK_ SATDGNTST(0.019)T(0.981)PPTSAK S(-65.87)AT(-66.25)DGNT(-45.71)S(-33.77)T(-17.23)T(17.23)PPT(-42.46)S(-50.84)AK 0 0 1 0 Q13620 Q13620 Q13620 CUL4B Cullin-4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.009094238281 3 539.233085 1614.67743 37213.3347278015 1.9359 0.0010439 283320 152.78 283320 152.78 692.342541591679 36.359 1.0449 36.359 35.85 36.895 7.1054E-15 75 35 3 0.993899525273063 0.0031757171067224 0.0585092178864265 9.7397E-05 1 8190 121.26 103.77 8 26288000 13977 16543 13304 18053 13717 12942 13086 15496 20549 2939.5 13223 15636 13439 18362 13893 13238 13555 15533 19959 3126.5 1 1 1 1 1 1 1 1 1 1 4114 975 3632 3861 4571 4571 4551 SATPVNCEQPDILVSSTPINEGQTVLDK 28 Phospho (STY) _S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_ S(0.535)AT(0.465)PVNCEQPDILVSSTPINEGQTVLDK S(0.6)AT(-0.6)PVNCEQPDILVS(-56.92)S(-56.56)T(-56.2)PINEGQT(-62.23)VLDK 0 0 1 0 P82094 P82094 P82094 TMF1 TATA element modulatory factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 888.951782226563 4 773.867795 3091.44208 32565.6965698228 2.0261 0.0015679 148060 114.58 148070 114.58 888.699917354993 92.277 0.4571 92.277 92.026 92.483 0 55 15 5 0.796377106131386 0.00308814053111166 0.041569596891695 0.0058894 1 21488 84.787 65.238 6 18205000 7385.2 6705.5 6924.8 7573 5043.3 7931.1 6317.3 6411.6 8556.9 16311 6986.6 6339.4 6978.7 7728.5 5249.2 7945.4 6430.6 6981.7 8348.1 15508 1 1 1 1 1 1 1 1 1 1 4115 807 3633 3862 4572 4572 1291 SATPVNCEQPDILVSSTPINEGQTVLDK 28 Phospho (STY) _S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_ S(0.538)AT(0.462)PVNCEQPDILVSSTPINEGQTVLDK S(0.67)AT(-0.67)PVNCEQPDILVS(-87.25)S(-94.05)T(-100.62)PINEGQT(-128.66)VLDK 0 0 1 0 P82094 P82094 P82094 TMF1 TATA element modulatory factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1184.93481445313 3 1031.48797 3091.44208 28997.4133008043 1.9355 0.0019964 148110 152.77 148110 152.78 1184.92984474314 92.277 0.48734 92.277 92.054 92.542 -1.4211E-14 38 16 4 0.712783450004724 0.00108257108855728 0.0470468011241997 1.9105E-07 1 21520 144.55 134.43 6 18649000 2955.4 3060.6 4051 2698.3 1931.4 3809.5 2247.2 4040.4 3190.7 23212 2800.7 2889.2 3990.8 2810.5 2090.5 3815.4 2298.2 4743.3 3108.2 21951 1 1 1 1 1 1 1 1 1 1 4116 807 3633 3862 4573 4573 1291 SATRPSPSPER 11 Phospho (STY) _SATRPSPS(ph)PER_ S(0.002)AT(0.002)RPS(0.044)PS(0.952)PER S(-26.9)AT(-27.27)RPS(-13.3)PS(13.3)PER 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 498.581115722656 3 422.194236 1263.56088 43842.1663991255 0.81497 0.00034408 180930 76.387 180930 76.388 498.581695387983 23.896 0.31996 23.896 23.758 24.078 3.5527E-15 28 10 4 0.759020965064177 0.00276366963684575 0.0318933415462635 0.012771 1 5348 63.29 46.071 4 5563900 5646.7 4226.5 4573.8 4657 4076.6 4520.5 4165.5 5124.3 4709.8 2169.1 5339.2 3995.1 4661.3 4753.2 4168.1 4548.8 4250.8 5182 4624.1 2161.1 1 1 1 1 1 1 1 1 1 1 4117 2226 3634 3863 4574 4574 4074;4075 SATRPSPSPER 11 2 Phospho (STY) _SATRPS(ph)PS(ph)PER_ S(0.228)AT(0.27)RPS(0.517)PS(0.985)PER S(-3.67)AT(-2.91)RPS(2.91)PS(19.29)PER 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 525.238159179688 3 448.84968 1343.52721 43827.6230242707 1.0076 0.00045227 170180 76.387 170190 76.388 525.236810249172 24.604 1.5658 24.604 23.964 25.53 3.5527E-15 102 53 3 0.973828787449123 0.00198990691370085 0.01410870998154 0.040734 1 5492 46.319 31.346 6 5488700 2863.4 3088.8 4098.8 4249.4 4069.1 4056.6 2924.7 3675.7 3869.5 3078.3 2714.1 2924.5 4053.7 4289.2 4115.8 4075.7 3057.9 3794.5 3778 2983.7 1 1 1 1 1 1 1 1 1 1 4118 2226 3634 3864 4575 4575 4074;4075 SATTTGSPGTEK 12 Phospho (STY) _SATTTGS(ph)PGTEK_ SAT(0.001)T(0.004)T(0.027)GS(0.969)PGTEK S(-46.04)AT(-29.68)T(-24.33)T(-15.58)GS(15.58)PGT(-66.99)EK 0 0 1 0 Q6GYQ0 Q6GYQ0 Q6GYQ0 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.924743652344 2 608.75829 1215.50203 34029.7904299346 2.2496 0.0013694 376440 229.16 376440 229.16 837.921134037821 32.836 0.37757 32.836 32.649 33.026 0 26 12 3 0.948484262858384 0.000922034562846551 0.0327668103386588 1.4363E-17 1 7351 250.05 182.85 6 12378000 15840 18236 16212 18129 12466 16569 14092 14250 18533 3149.6 14990 17227 16260 18596 12899 16655 14388 14479 18099 3295.6 1 1 1 1 1 1 1 1 1 1 4119 1237 3635 3865 4576 4576 2181 SAVLLVDETATTPIFANR 18 Phospho (STY) _S(ph)AVLLVDETATTPIFANR_ S(1)AVLLVDETATTPIFANR S(56.18)AVLLVDET(-56.18)AT(-68.03)T(-73.78)PIFANR 0 0 1 0 Q12802 Q12802 Q12802 AKAP13 A-kinase anchor protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.394836425781 3 666.669634 1996.98707 37287.1745807079 2.2233 0.0014822 114580 76.388 114580 76.39 743.392272209354 100.22 0.22545 100.22 100.11 100.34 0 20 7 5 0.952306746543618 0.000835196853624095 0.00750362224664823 0.0010915 1 23407 98.562 77.899 4 33083000 8814.5 7022.3 9607.2 6934.8 8363.8 9252.1 8553 7433.2 8326 28910 8343.8 6633.2 9613.5 7163 8563.5 9202 8690.9 8397.6 8224.9 27394 1 1 1 1 1 1 1 1 1 1 4120 901 3636 3866 4577 4577 1486 SAYPPPAPAYALSSPR 16 Phospho (STY) _SAYPPPAPAYALSS(ph)PR_ SAYPPPAPAYALS(0.177)S(0.823)PR S(-154.04)AY(-147.48)PPPAPAY(-100.19)ALS(-6.68)S(6.68)PR 0 0 1 0 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.995666503906 3 575.606305 1723.79709 38365.4080953703 1.7154 0.0009874 132710 76.388 132710 76.389 652.328542957056 66.791 0.80321 66.791 66.316 67.119 0 69 27 3 0.893389921001696 0.00174574492763538 0.0314661986525265 1.721E-08 1 15647 174.97 150.44 5 14748000 6379.9 6622.7 6693.1 7102.8 5130.7 5472.3 5256.1 5732.7 5835.2 4072.1 6038.2 6259 6702.6 7237.4 5301.3 5568.9 5360.1 5862.9 5733.1 3967.1 1 1 1 1 1 1 1 1 1 1 4121 57 3637 3867 4578 4578 86 SCCDLAAAGQLGK 13 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)CCDLAAAGQLGK_ S(1)CCDLAAAGQLGK S(86.62)CCDLAAAGQLGK 1 0 1 0 Q9UBB6 Q9UBB6 Q9UBB6 NCDN Neurochondrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.378723144531 2 736.799109 1471.58366 33931.6776723786 1.9184 0.0014135 155510 114.58 155510 114.58 851.38019960391 69.259 0.57507 69.259 68.971 69.546 0 45 19 3 0.803801917460794 0.00105499659883073 0.0302114629390865 3.7241E-07 1 16235 86.624 75.473 1 12968000 9537.6 12192 10403 13918 10171 11065 11251 12115 12377 21080 9028.3 11527 10425 14139 10352 11271 11432 12747 12165 20130 1 1 1 1 1 1 1 1 1 1 4122 2115 3638 3868 4579 4579 3813 SCFESSPDPELK 12 Phospho (STY) _SCFESS(ph)PDPELK_ SCFES(0.145)S(0.855)PDPELK S(-43.49)CFES(-7.7)S(7.7)PDPELK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.306518554688 3 492.530185 1474.56873 38950.5748338118 2.1688 0.0010682 310180 152.77 310190 152.78 645.305331129585 63.979 2.3821 63.979 63.606 65.988 0 276 81 6 0.991510118016381 0.00849061773493787 0.104983981084548 2.9626E-07 2 14980 148.52 108.45 3 325370000 39397 47896 42281 44991 25410 41872 31765 37299 47515 9242.5 37291 45230 42214 46323 26887 42069 32460 37869 46215 9566.2 2 2 2 2 2 2 2 2 2 2 4123 2226 3639 3869 4580;4581 4580 4076 SCGPASQSTLGLKGSLKR 18 Phospho (STY) _SCGPASQSTLGLKGS(ph)LKR_ SCGPASQSTLGLKGS(1)LKR S(-168.75)CGPAS(-127.01)QS(-74.19)T(-54.02)LGLKGS(54.02)LKR 0 0 1 2 Q9BXS6 Q9BXS6 Q9BXS6 NUSAP1 Nucleolar and spindle-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.367431640625 4 482.492129 1925.93941 38743.6640691475 2.135 0.0010301 356220 171.87 356220 171.87 654.61532368831 56.772 0.53074 56.772 56.513 57.044 0 73 17 6 0.733303723604411 0.00770816583148433 0.136306273742577 4.7451E-11 1 13247 193.53 182.27 5 130240000 21137 23679 19559 24413 14002 19929 12793 20089 23566 5675.8 19995 22373 19716 24949 14530 20189 13375 20315 22796 5809.4 1 1 1 1 1 1 1 1 1 1 4124 1866 3640 3870 4582 4582 3403 SCINLPTVLPGSPSK 15 Acetyl (Protein N-term),Phospho (STY) _(ac)SCINLPTVLPGS(ph)PSK_ SCINLPTVLPGS(0.985)PS(0.015)K S(-88.43)CINLPT(-50.61)VLPGS(18.17)PS(-18.17)K 1 0 1 0 P04183 P04183 P04183 TK1 Thymidine kinase, cytosolic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.99609375 3 564.607318 1690.80012 38746.9419210329 1.4688 0.00082927 135290 76.387 135290 76.388 640.994876501108 95.245 1.461 95.245 94.857 96.318 0 207 50 6 0.974164489933112 0.00409256521822597 0.029883842658835 2.7213E-07 2 22103 109.89 88.434 4 592780000 6789.5 10111 7227.4 8866.9 6901.9 7275.4 7046.3 8543.1 9654.3 12352 6426.3 9544.4 7248.7 9154.6 7027.8 7402.7 7237 8892.4 9415.3 11829 2 2 2 2 2 2 2 2 2 2 4125 292 3641 3871 4583;4584 4583 483 SCLAKGSPER 10 Phospho (STY) _SCLAKGS(ph)PER_ SCLAKGS(1)PER S(-67.41)CLAKGS(67.41)PER 0 0 1 1 Q6NYC8 Q6NYC8 Q6NYC8 PPP1R18 Phostensin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.924377441406 2 592.760113 1183.50567 34219.2985641181 2.6466 0.0015688 386600 229.16 386610 229.16 821.92329766667 36.402 0.30729 36.402 36.206 36.513 0 19 10 2 0.89123529463518 0.000989685855366667 0.0324103680745907 0.00029128 1 8199 112.02 83.445 2 16202000 13879 14194 13224 14179 31234 12992 30717 19555 13995 3303.8 13131 13409 13573 14541 30610 13164 30834 19460 14518 3563.5 1 1 1 1 1 1 1 1 1 1 4126 1250 3642 3872 4585 4585 2215 SCMLTGTPESVQSAK 15 Phospho (STY) _SCMLTGT(ph)PESVQSAK_ SCMLTGT(1)PESVQSAK S(-59.06)CMLT(-34.29)GT(34.29)PES(-81.44)VQS(-141.25)AK 0 0 1 0 Q96AE4 Q96AE4 Q96AE4 FUBP1 Far upstream element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.351806640625 3 559.240417 1674.69942 36978.6580690839 2.1261 0.001189 273180 152.78 273190 152.78 712.016120370683 61.936 0.4715 61.936 61.65 62.122 0 55 15 5 0.979032233061953 0.00208345677397918 0.0172442053101843 9.0349E-11 1 14512 202.34 182.09 5 24191000 9955.8 12505 9741.9 13059 10677 9580.1 12272 11292 12843 6617.5 9419.9 11816 9836.3 13319 10803 9791.8 12431 11460 12648 6492.5 1 1 1 1 1 1 1 1 1 1 4127 1646 3643 3873 4586 4586 4722 SCPSFSASSEGTR 13 Phospho (STY) _SCPS(ph)FSASSEGTR_ S(0.001)CPS(0.994)FS(0.005)ASSEGTR S(-28.72)CPS(23.27)FS(-23.27)AS(-59.8)S(-79.7)EGT(-122.3)R 0 0 1 0 P27707 P27707 P27707 DCK Deoxycytidine kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 841.359008789063 2 726.776688 1451.53882 34513.8333099236 1.7663 0.0012837 157660 114.58 157660 114.58 841.358471243762 41.144 0.6294 41.144 40.911 41.54 0 60 21 4 0.977501999633206 0.00118364450624706 0.0694783714865368 1.391E-16 1 9368 246.73 197.29 6 16089000 16562 8249.2 18044 8198 31814 18024 27899 20312 7585 4856.1 15677 7792.5 18245 8578.5 31398 17666 28031 20432 8345.7 5042.7 1 1 1 1 1 1 1 1 1 1 4128 488 3644 3874 4587 4587 799 SCQKSPAQQEPPQR 14 Phospho (STY) _SCQKS(ph)PAQQEPPQR_ S(0.008)CQKS(0.992)PAQQEPPQR S(-20.88)CQKS(20.88)PAQQEPPQR 0 0 1 1 P51825 P51825 P51825 AFF1 AF4/FMR2 family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.02978515625 3 574.253937 1719.73998 36295.1937930079 1.863 0.0010699 266040 152.77 266040 152.78 727.363253291594 27.29 1.2066 27.29 27.03 28.236 0 92 41 3 0.968530994543046 0.00164476603901528 0.0130721023372887 0.0012283 1 6071 98.391 79.315 2 13535000 9397.8 5762.9 10491 5978.7 8494 9413.1 8892.2 9425.9 5960 2711.2 8896.8 5445.2 10477 6180.8 8740.5 9287.2 8952 9536.1 6005.1 2771 1 1 1 1 1 1 1 1 1 1 4129 683 3645 3875 4588 4588 1149 SCSFSSESR 9 Phospho (STY) _SCS(ph)FSSESR_ S(0.089)CS(0.906)FS(0.005)SESR S(-10.09)CS(10.09)FS(-22.48)S(-39.11)ES(-82.98)R 0 0 1 0 Q5VZ89 Q5VZ89 Q5VZ89 DENND4C DENN domain-containing protein 4C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.2802734375 2 563.697178 1125.3798 38964.1521617419 1.7523 0.00098774 203270 114.58 203270 114.58 678.278369243818 33.784 0.34691 33.784 33.587 33.934 0 26 11 3 0.900685513512254 0.00112658874741718 0.0430548736432593 0.00021408 1 7553 127.37 83.274 5 9064100 13677 13918 15041 13468 11851 15165 12551 13811 13356 4302.7 12947 13146 15030 13883 12225 15116 12764 14036 13144 4371.2 1 1 1 1 1 1 1 1 1 1 4130 1214 3646 3876 4589 4589 2133 SCSMNQLSSGIPVPKPR 17 Phospho (STY) _SCS(ph)MNQLSSGIPVPKPR_ S(0.006)CS(0.994)MNQLSSGIPVPKPR S(-21.9)CS(21.9)MNQLS(-63.76)S(-70.78)GIPVPKPR 0 0 1 1 Q9P246 Q9P246 Q9P246 STIM2 Stromal interaction molecule 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.413391113281 3 646.637282 1936.89002 34603.5684171984 1.9366 0.0012522 236260 152.77 236260 152.78 799.411170425108 71.476 0.69195 71.476 71.117 71.809 -1.4211E-14 53 23 3 0.976131705010922 0.00257022225884099 0.0277419786465349 6.5491E-08 1 16809 170.18 134.54 4 13353000 9350.9 10559 10865 9920.9 15899 10282 13477 12745 11406 17635 8854 9971.2 10911 10231 15800 10355 13778 13220 11342 16900 1 1 1 1 1 1 1 1 1 1 4131 2101 3647 3877 4590 4590 3796 SCSPLAFSAFGDLTIK 16 Phospho (STY) _S(ph)CSPLAFSAFGDLTIK_ S(0.563)CS(0.437)PLAFSAFGDLTIK S(1.09)CS(-1.09)PLAFS(-53.38)AFGDLT(-95.85)IK 0 0 1 0 Q96EY5 Q96EY5 Q96EY5 MVB12A Multivesicular body subunit 12A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 751.721862792969 3 598.610839 1792.81069 36546.1654771756 0.97576 0.0005841 255220 152.78 255220 152.78 751.38594125946 101.38 0.25496 101.38 101.3 101.56 0 20 8 4 0.867020430736855 0.00237699310002894 0.0339552943679415 0.00011584 1 23838 105.91 86.166 4 70992000 8331.7 11560 9569.3 10321 9115.5 8229.4 7091.7 11177 10417 51113 7888.6 10914 9555.2 10639 9251.7 8475.3 7407 12637 10137 48388 1 1 1 1 1 1 1 1 1 1 4132 1675 3648 3878 4591 4591 3082 SCSSPAVSAVSQLPLSPK 18 Phospho (STY) _SCSSPAVSAVSQLPLS(ph)PK_ SCSSPAVSAVSQLPLS(1)PK S(-91.45)CS(-91.73)S(-91.93)PAVS(-78.62)AVS(-54.66)QLPLS(54.66)PK 0 0 1 0 Q9Y2F5 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.080749511719 3 632.304186 1893.89073 36043.0097924988 1.7594 0.0011124 241620 152.78 241620 152.78 785.413762758772 78.52 0.40406 78.52 78.318 78.722 0 33 13 4 0.777957577927749 0.00127515229103454 0.0228675072274983 5.9699E-05 1 18409 106.69 85.491 6 7847400 6296.9 6323.1 7165.2 5809.3 5044.5 6357.3 5626.1 6087.9 5077.2 13250 5961.7 5970.3 7140.1 6005 5252.1 6369.4 5683.9 6516.3 5032.9 12617 1 1 1 1 1 1 1 1 1 1 4133 2243 3649 3879 4592 4592 4141 SCTKPSPSK 9 Phospho (STY) _SCTKPS(ph)PSK_ S(0.016)CT(0.01)KPS(0.972)PS(0.002)K S(-17.85)CT(-19.68)KPS(17.85)PS(-26.72)K 0 0 1 1 Q9NQW6 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 586.986145019531 3 357.822863 1070.44676 41170.9346247923 1.1243 0.0004023 640440 229.16 640440 229.16 586.986052607679 34.862 0.54437 34.862 34.606 35.15 0 66 18 5 0.905517140101152 0.00546761790091688 0.0747849925961046 0.015941 1 7800 60.401 37.522 4 67660000 34361 40253 34351 38392 14940 33447 16202 27664 42168 3094.4 32514 38015 34355 39454 16350 33680 17143 28066 40506 3554 1 1 1 1 1 1 1 1 1 1 4134 2010 3650 3880 4593 4593 3649 SCTPSPDQISHR 12 2 Phospho (STY) _SCT(ph)PS(ph)PDQISHR_ S(0.161)CT(0.868)PS(0.971)PDQISHR S(-8.03)CT(8.03)PS(14.6)PDQIS(-41.4)HR 0 0 2 0 Q7Z2W4 Q7Z2W4 Q7Z2W4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.912902832031 3 515.524867 1543.55277 41311.2887703689 1.1211 0.00057793 148170 76.388 148180 76.388 592.247182421157 34.009 0.66557 34.009 33.556 34.221 0 37 22 2 0.840978508976365 0.000698023032757669 0.00695182283126455 0.056188 1 7574 54.281 41.704 6 15415000 26231 6811.4 26078 9234.5 8606.5 25005 6514.1 15099 6523.8 2627 24821 6448.3 26050 9587.2 9736 24241 6731.5 15609 6436.6 2823.1 1 1 1 1 1 1 1 1 1 1 4135 1328 3651 3881 4594 4594 2382;4636 SCTPSPDQISHR 12 Phospho (STY) _SCTPS(ph)PDQISHR_ S(0.004)CT(0.027)PS(0.97)PDQISHR S(-24.32)CT(-15.6)PS(15.6)PDQIS(-46.88)HR 0 0 1 0 Q7Z2W4 Q7Z2W4 Q7Z2W4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 565.592590332031 3 488.869424 1463.58644 41419.9876306567 1.2117 0.00059237 156250 76.388 156260 76.388 565.25737840373 35.175 0.7017 35.175 34.803 35.505 0 72 23 4 0.950951919754944 0.00216641873981004 0.0116202193624673 0.0086404 1 7876 75.463 55.356 4 36869000 16296 16938 15861 16540 17119 18203 14788 17043 16969 4528.6 15419 15999 16007 17033 17268 18165 15224 17277 16650 4658.7 1 1 1 1 1 1 1 1 1 1 4136 1328 3651 3882 4595 4595 2382;4636 SCVEEPEPEPEAAEGDGDK 19 Unmodified _SCVEEPEPEPEAAEGDGDK_ 0 0 0 0 P51858 P51858 P51858 HDGF Hepatoma-derived growth factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.392822265625 3 682.281113 2043.82151 34135.9029955941 1.478 0.0010084 223920 152.78 223920 152.78 835.389934583919 47.939 0.40812 47.939 47.715 48.123 0 36 13 4 0.976727534709272 0.00154174061614954 0.0156368177760252 9.6649E-08 1 11107 160.55 142.95 1 21042000 10684 9412.1 10691 10951 10888 10076 11355 11493 11403 10703 10110 8900.1 10768 11136 11044 10176 11537 11796 11249 10344 1 1 1 1 1 1 1 1 1 1 4137 684 3652 3883 4596 4596 SDAAVDTSSEITTK 14 Acetyl (Protein N-term),Phospho (STY) _(ac)SDAAVDTS(ph)SEITTK_ SDAAVDT(0.209)S(0.703)S(0.086)EIT(0.002)TK S(-48.58)DAAVDT(-5.27)S(5.27)S(-9.14)EIT(-26.65)T(-35.01)K 1 0 1 0 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 888.415161132813 2 773.829641 1545.64473 33064.9978670095 1.3301 0.0010293 148070 114.58 148070 114.58 888.411378628452 55.792 1.504 55.792 55.393 56.897 0 156 50 5 0.89888760969541 0.00264470270186514 0.0481742352069488 5.9643E-16 2 12969 138.31 124.73 6 265320000 27696 23876 28373 24528 34272 28775 37377 30142 24201 22670 26210 22558 28609 25213 34463 28713 37537 30864 24438 22044 2 2 2 2 2 2 2 2 2 2 4138 311 3653 3884 4597;4598 4597 513;514 SDAAVDTSSEITTK 14 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)DAAVDTSSEITTK_ S(0.998)DAAVDT(0.001)S(0.001)SEITTK S(30.57)DAAVDT(-30.57)S(-30.57)S(-40.96)EIT(-69.05)T(-77.28)K 1 0 1 0 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 888.412475585938 2 773.829641 1545.64473 33069.3975344517 1.6585 0.0012834 148070 114.58 148070 114.58 888.411459449799 58.683 3.7717 58.683 57.732 61.504 0 404 129 5 0.997538541110355 0.0139962174365222 0.547091952036433 9.4524E-23 4 13855 149.96 128.33 6 810470000 102240 68313 95388 64994 133490 104480 131430 96115 67051 161270 96720 64514 96907 67571 133130 103160 132120 101590 68890 154080 4 4 4 4 4 4 4 4 4 4 4139 311 3653 3884 4599;4600;4601;4602 4600 513;514 SDAAVDTSSEITTK 14 Acetyl (Protein N-term) _(ac)SDAAVDTSSEITTK_ 1 0 0 0 P06454 P06454 P06454 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 848.427917480469 2 733.846475 1465.6784 33576.8807929648 1.2351 0.0009064 156140 114.58 156140 114.58 848.42813593011 55.825 0.83008 55.825 55.449 56.279 0 95 27 5 0.983422466326156 0.00259470499869764 0.0489833020428438 3.259E-23 1 12974 154.24 133.78 1 373570000 24059 16388 23871 13800 26587 23949 27553 23564 15001 17673 22765 15466 24083 14491 26822 23581 27657 24183 15334 17186 1 1 1 1 1 1 1 1 1 1 4140 311 3653 3885 4603 4603 SDATADDLIDVVEGNR 16 Unmodified _SDATADDLIDVVEGNR_ 0 0 0 0 Q9Y295 Q9Y295 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.658386230469 3 563.935717 1688.78532 39355.3892421718 1.3585 0.00076612 135450 76.388 135460 76.389 640.323292140201 88.274 0.62478 88.274 88.027 88.652 0 60 21 4 0.935526827250534 0.00336284874820288 0.0428300904956002 3.2805E-08 1 20574 174.24 154.63 1 17307000 3790.6 3145.2 3935.3 3474.4 3953.1 3059.2 3980.3 3816.5 3930.1 6915.3 3587.4 2973.1 3954.5 3540.7 4010.9 3107.5 4048.9 4007.3 3879.9 6599.9 1 1 1 1 1 1 1 1 1 1 4141 2240 3654 3886 4604 4604 SDDSKSSSPELVTHLK 16 Phospho (STY) _SDDSKS(ph)SSPELVTHLK_ SDDS(0.126)KS(0.542)S(0.314)S(0.018)PELVTHLK S(-31.24)DDS(-6.32)KS(2.38)S(-2.38)S(-14.9)PELVT(-85.07)HLK 0 0 1 1 Q07960 Q07960 Q07960 ARHGAP1 Rho GTPase-activating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.335632324219 4 453.212111 1808.81934 40034.5373406672 1.4696 0.00066606 379230 171.87 379230 171.87 625.334799270157 59.775 0.45748 59.775 59.593 60.05 0 33 15 3 0.46153731001353 0.000619523269608857 0.0044849840272365 4.287E-07 1 14015 154.84 115.63 6 14048000 9181.5 6139 10911 7090.5 9167.2 11258 8622.9 9068.9 7787.2 3303.9 8694.6 5804.7 10865 7289.1 9397.4 11077 8780.7 9281.2 7719.1 3320.9 1 1 1 1 1 1 1 1 1 1 4142 885 3655 3887 4605 4605 1439;1440 SDEFSLADALPEHSPAK 17 Acetyl (Protein N-term),Phospho (STY) _(ac)SDEFSLADALPEHS(ph)PAK_ SDEFSLADALPEHS(1)PAK S(-113.35)DEFS(-95.79)LADALPEHS(95.79)PAK 1 0 1 0 Q8NDC0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.340026855469 3 645.950577 1934.8299 36368.1921167319 1.0927 0.00070581 118260 76.388 118260 76.388 722.672731393908 87.792 0.55708 87.792 87.47 88.027 0 53 18 4 0.891071311291513 0.00321822117680311 0.0301793391621062 2.7782E-31 1 20462 197.85 182.46 3 23774000 4385.1 4310.3 4625.6 5246.8 3597.1 4473.8 4199.3 5946.9 5001.8 18580 4150.3 4077.2 4632.4 5317.7 3720.3 4572.3 4267.6 6467.9 4901.3 17633 1 1 1 1 1 1 1 1 1 1 4143 1505 3656 3888 4606 4606 2764 SDFDEFER 8 Acetyl (Protein N-term) _(ac)SDFDEFER_ 1 0 0 0 P26368 P26368 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 543.722961425781 2 543.722361 1085.43017 43835.6503027445 0.38996 0.00021203 0.15525 8.4412E-05 0.54521 0.00029644 543.722537134355 65.725 0.53389 65.725 65.454 65.988 0 38 17 3 0.863471757127632 0.00172334012386009 0.0521999659600451 7.2682E-06 1 15430 111.82 102.95 1 9428500 4410.7 4989.5 4937.8 4089.8 4603.5 5865 4855.2 4548.1 4503 2158.6 4175.6 4708.2 4938.1 4282.7 4694.6 5787.1 4920.5 4678.1 4458 2137.9 1 1 1 1 1 1 1 1 1 1 4144 480 3657 3889 4607 4607 SDFDEFER 8 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)DFDEFER_ S(1)DFDEFER S(99)DFDEFER 1 0 1 0 P26368 P26368 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.706359863281 2 583.705526 1165.3965 NaN NaN NaN NaN NaN NaN NaN NaN 71.972 1 71.972 71.472 72.472 0 NaN NaN NaN 2.0699E-06 1 16889 98.997 94.64 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4145 480 3657 3890 4608 4608 796 SDFDEFER 8 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)DFDEFER_ S(1)DFDEFER S(99)DFDEFER 1 0 1 0 P26368 P26368 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.706237792969 2 583.705526 1165.3965 NaN NaN NaN NaN NaN NaN NaN NaN 72.829 1 72.829 72.329 73.329 0 NaN NaN NaN 1.4123E-06 1 17098 98.997 94.64 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4146 480 3657 3890 4609 4609 796 SDFDEFER 8 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)DFDEFER_ S(1)DFDEFER S(89.3)DFDEFER 1 0 1 0 P26368 P26368 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.7060546875 2 583.705526 1165.3965 NaN NaN NaN NaN NaN NaN NaN NaN 73.662 1 73.662 73.162 74.162 0 NaN NaN NaN 0.00058359 1 17296 89.296 84.939 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4147 480 3657 3890 4610 4610 796 SDFDEFER 8 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)DFDEFER_ S(1)DFDEFER S(85.06)DFDEFER 1 0 1 0 P26368 P26368 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.706665039063 2 583.705526 1165.3965 NaN NaN NaN NaN NaN NaN NaN NaN 74.472 1 74.472 73.972 74.972 0 NaN NaN NaN 0.00077313 1 17487 85.064 80.708 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4148 480 3657 3890 4611 4611 796 SDFDEFER 8 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)DFDEFER_ S(1)DFDEFER S(85.06)DFDEFER 1 0 1 0 P26368 P26368 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.706481933594 2 583.705526 1165.3965 NaN NaN NaN NaN NaN NaN NaN NaN 75.548 1 75.548 75.048 76.048 0 NaN NaN NaN 0.0004397 1 17729 85.064 80.708 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4149 480 3657 3890 4612 4612 796 SDGEAKPEPSPSPR 14 Phospho (STY) _SDGEAKPEPSPS(ph)PR_ SDGEAKPEPS(0.047)PS(0.953)PR S(-70.01)DGEAKPEPS(-13.11)PS(13.11)PR 0 0 1 1 P26358 P26358 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.001403808594 3 511.890882 1532.65082 38414.0553723774 1.6976 0.00086897 298450 152.78 298460 152.78 664.666130816009 33.253 0.43964 33.253 32.968 33.407 0 46 15 4 0.988843418077709 0.00443777888357832 0.061490053241024 0.0064142 1 7412 83.666 68.245 3 61962000 15003 13741 15881 13563 16956 16234 17435 16153 15234 3784.1 14200 12980 15955 13980 17149 16159 17664 16320 15125 3937 1 1 1 1 1 1 1 1 1 1 4150 479 3658 3891 4613 4613 793 SDISPLTPR 9 Phospho (STY) _SDISPLT(ph)PR_ SDIS(0.001)PLT(0.999)PR S(-44.7)DIS(-30.85)PLT(30.85)PR 0 0 1 0 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.835144042969 2 533.252447 1064.49034 38793.2613682293 2.0779 0.0011081 214870 114.58 214870 114.58 647.833461052425 53.833 0.88364 53.833 53.503 54.387 7.1054E-15 71 29 4 0.847801902748153 0.00105337060054874 0.0217924457600863 0.018083 1 12536 73.655 49.566 3 20479000 13167 25982 11270 26708 10621 12249 9452.6 15732 26781 5786.3 12452 24548 11447 27147 10816 12978 10152 15820 25690 5812.6 1 1 1 1 1 1 1 1 1 1 4151 616 3659 3892 4614 4614 4466 SDKNQQGFSPK 11 Phospho (STY) _SDKNQQGFS(ph)PK_ SDKNQQGFS(1)PK S(-46.37)DKNQQGFS(46.37)PK 0 0 1 1 Q9NS87 Q9NS87 Q9NS87 KIF15 Kinesin-like protein KIF15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.356811523438 3 439.194125 1314.56054 38429.2360646731 2.0746 0.00091115 521780 229.16 521780 229.16 668.357356737069 43.358 0.40263 43.358 43.09 43.492 7.1054E-15 45 13 4 0.985678497848745 0.00214051660293192 0.00636922449987951 0.0061179 1 9948 82.259 56.303 2 47525000 48650 39068 51770 39500 20303 47733 18731 36519 42020 7296.3 46047 36908 51562 40664 22461 47351 19779 37285 40473 7715.5 1 1 1 1 1 1 1 1 1 1 4152 2025 3660 3893 4615 4615 3677 SDKPDMAEIEK 11 Acetyl (Protein N-term),Oxidation (M) _(ac)SDKPDM(ox)AEIEK_ SDKPDM(1)AEIEK SDKPDM(49.5)AEIEK 1 1 0 1 P62328 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.968688964844 2 660.803025 1319.5915 33847.439594897 1.3839 0.00091445 346800 229.16 346800 229.16 889.966050350104 48.07 0.4437 48.07 47.803 48.246 0 39 14 3 0.922117722724907 0.000654071290578814 0.00774741264028352 0.010992 1 11119 49.5 21.292 1 24553000 24475 16122 25546 14388 17642 25498 17893 18583 15802 5241.5 23164 15220 25565 15057 18372 24985 18144 19066 15681 5365.6 1 1 1 1 1 1 1 1 1 1 4153 763 3661 3894 4616 4616 102 SDKPDMAEIEK 11 Acetyl (Protein N-term) _(ac)SDKPDMAEIEK_ 1 0 0 1 P62328 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.971008300781 2 652.805568 1303.59658 33244.8155323972 2.3594 0.0015402 351040 229.16 351050 229.17 881.969261634023 61.926 0.53058 61.926 61.65 62.181 0 66 17 5 0.92038277584286 0.0016510910484338 0.0520782454074145 5.2591E-07 1 14503 86.898 45.267 1 110350000 57846 36735 59826 34428 41783 51275 46860 46819 36812 14954 54744 34690 59916 35761 43529 50616 47181 47586 36749 15165 1 1 1 1 1 1 1 1 1 1 4154 763 3661 3895 4617 4617 SDKPDMAEIEK 11 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)DKPDMAEIEK_ S(1)DKPDMAEIEK S(84.17)DKPDMAEIEK 1 0 1 1 P62328 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.953857421875 2 692.788733 1383.56291 32590.2180776044 2.1147 0.0014651 330780 229.16 330780 229.16 921.951675021068 66.796 0.72289 66.796 66.516 67.238 0 61 24 4 0.818041632195486 0.00105535823508841 0.0468067369168412 3.8876E-05 1 15674 84.17 58.232 1 16119000 16373 16420 16131 14832 14933 15210 15089 16328 17147 17207 15492 15502 16242 15332 15229 15275 15408 16854 16831 16580 1 1 1 1 1 1 1 1 1 1 4155 763 3661 3896 4618 4618 1246 SDKPDMAEIEKFDK 14 Acetyl (Protein N-term) _(ac)SDKPDMAEIEKFDK_ 1 0 0 2 P62328 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.100830078125 3 565.602911 1693.7869 35282.6870859516 2.2032 0.0012461 405170 229.16 405170 229.16 795.099947430924 76.656 0.87254 76.656 76.126 76.998 0 134 29 7 0.994128742235783 0.0392560492222962 0.646438951319802 1.0897E-06 2 17962 75.961 43.574 1 288560000 389530 228060 404470 237620 319540 391160 345300 339090 254800 28919 368650 215490 405430 245860 329560 384620 347770 343020 255240 35078 2 2 2 2 2 2 2 2 2 2 4156 763 3662 3897 4619;4620 4620 SDKQYAENYTRPSSR 15 Phospho (STY) _SDKQYAENYTRPSS(ph)R_ SDKQYAENYT(0.006)RPS(0.272)S(0.722)R S(-57.03)DKQY(-51.86)AENY(-36.06)T(-21.05)RPS(-4.23)S(4.23)R 0 0 1 2 Q9Y608 Q9Y608 Q9Y608 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.719299316406 3 627.942416 1880.80542 35555.400274478 1.9077 0.0011979 243300 152.78 243300 152.78 780.718591031368 38.949 0.53157 38.949 38.61 39.141 7.1054E-15 49 17 3 0.967711261325775 0.001153966032421 0.0268830861478924 0.038574 1 8808 57.293 41.537 6 12483000 6446.7 10683 7097.6 10666 14199 7267.6 14491 10804 10004 3079.1 6102.6 10092 7196.9 10898 13990 7486.5 14614 10793 10061 3149.4 1 1 1 1 1 1 1 1 1 1 4157 2304 3663 3898 4621 4621 4245;4246 SDKSPDLAPTPAPQSTPR 18 Phospho (STY) _SDKS(ph)PDLAPTPAPQSTPR_ S(0.016)DKS(0.984)PDLAPTPAPQSTPR S(-17.89)DKS(17.89)PDLAPT(-41.55)PAPQS(-85.62)T(-85.77)PR 0 0 1 1 Q9BY44 Q9BY44 Q9BY44 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.083557128906 3 648.973605 1943.89899 34809.2150208505 1.2426 0.00080643 235410 152.78 235410 152.78 802.083259872729 47.612 0.59589 47.612 47.412 48.008 -7.1054E-15 81 20 6 0.99438242369245 0.0215628503875778 0.200647797616002 1.2038E-07 1 11048 158.2 146.35 5 274070000 99044 129390 98657 112550 75273 105600 73197 107490 136020 24227 93720 122130 99074 116480 77798 106230 76328 108480 131550 25300 1 1 1 1 1 1 1 1 1 1 4158 1869 3664 3899 4622 4622 3404 SDNGELEDKPPAPPVR 16 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)DNGELEDKPPAPPVR_ S(1)DNGELEDKPPAPPVR S(63.63)DNGELEDKPPAPPVR 1 0 1 1 Q13177 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.336059570313 3 614.947167 1841.81967 37085.0890013326 1.5955 0.00098116 124220 76.388 124220 76.389 692.004350689055 56.699 1.4433 56.699 55.833 57.276 0 179 48 5 0.712785644139775 0.00161187433817987 0.0318482852479663 0.0034419 2 13183 63.631 54.261 1 32481000 27074 29340 30704 33528 29183 30289 28265 29503 31639 18477 25633 27740 30688 34117 29695 30530 28908 30181 31075 18081 2 2 2 2 2 2 2 2 2 2 4159 933 3665 3900 4623;4624 4624 1534 SDNKDDDIDIDAI 13 Unmodified _SDNKDDDIDIDAI_ 0 0 0 1 P55010 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 953.987731933594 2 724.823 1447.63145 32800.7086220343 2.3524 0.0017051 316170 229.16 316170 229.17 953.986567163987 74.179 0.43356 74.179 73.955 74.388 0 33 14 4 0.969498901477691 0.00110427016405566 0.071121317360896 0.0090078 1 17439 74.326 44.583 1 12868000 9829.3 13192 9172.4 12969 11405 10043 11503 11595 14964 25337 9298.6 12461 9301.4 13282 11447 10265 11799 12334 14618 24126 1 1 1 1 1 1 1 1 1 1 4160 715 3666 3901 4625 4625 SDNKDDDIDIDAI 13 Unmodified _SDNKDDDIDIDAI_ 0 0 0 1 P55010 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 953.98876953125 2 724.823 1447.63145 NaN NaN NaN NaN NaN NaN NaN NaN 74.369 1 74.369 73.869 74.869 0 NaN NaN NaN 0.024085 1 17463 78.096 57.793 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4161 715 3666 3901 4626 4626 SDPESPIKK 9 Phospho (STY) _SDPES(ph)PIKK_ S(0.001)DPES(0.999)PIKK S(-31.57)DPES(31.57)PIKK 0 0 1 1 Q8NDI1 Q8NDI1 Q8NDI1 EHBP1 EH domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.00244140625 3 360.837278 1079.49001 42800.826710825 1.1908 0.00042968 635090 229.16 635090 229.16 590.000924857562 45.604 0.35379 45.604 45.466 45.819 7.1054E-15 26 11 3 0.968382578774613 0.00118577990147726 0.00522677971095215 0.0071753 1 10511 81.92 57.065 2 16928000 13699 18036 15454 17907 14126 15831 15552 17438 19076 5234.5 12969 17038 15447 18361 14437 15991 15859 17587 18673 5332.5 1 1 1 1 1 1 1 1 1 1 4162 1507 3667 3902 4627 4627 2768 SDQEAKPSTEDLGDKK 16 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)DQEAKPSTEDLGDKK_ S(1)DQEAKPSTEDLGDKK S(34.69)DQEAKPS(-34.69)T(-42.98)EDLGDKK 1 0 1 2 P63165 P63165 P63165 SUMO1 Small ubiquitin-related modifier 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.333068847656 4 468.208297 1868.80408 38517.1446272171 2.0049 0.00093872 367080 171.87 367090 171.87 640.330765175104 52.464 1.0364 52.464 51.806 52.842 7.1054E-15 123 35 6 0.96041293829804 0.00451938610115276 0.0809621526074513 1.0304E-07 2 12189 128.06 114.23 3 79271000 44322 41189 39720 44521 46565 43161 56151 48360 46500 12066 41923 38929 40362 45488 46976 43411 56432 48670 46291 12481 2 2 2 2 2 2 2 2 2 2 4163 778 3668 3903 4628;4629 4628 1254 SDQQLDCALDLMR 13 Acetyl (Protein N-term) _(ac)SDQQLDCALDLMR_ 1 0 0 0 P47756 P47756 P47756 CAPZB F-actin-capping protein subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 803.865051269531 2 803.863622 1605.71269 36016.5596902096 1.7647 0.0014186 -0.18596 -0.00014949 1.5787 0.0012691 803.863536560633 95.772 0.46098 95.772 95.538 95.999 0 36 15 3 0.788540691504824 0.000630530452580565 0.0333887909803547 1.0643E-10 1 22267 114.4 91.572 1 4583100 3384.1 4038.6 3545.5 4651.9 3669.5 3121.6 4004 5111.9 4147.3 19554 3202.8 3818.6 3563 4714.4 3721.4 3259 4063.6 5639.6 4086.1 18531 1 1 1 1 1 1 1 1 1 1 4164 621 3669 3904 4630 4630 SDRGSGQGDSLYPVGYLDK 19 Phospho (STY) _SDRGS(ph)GQGDSLYPVGYLDK_ S(0.159)DRGS(0.83)GQGDS(0.011)LYPVGYLDK S(-7.18)DRGS(7.18)GQGDS(-18.91)LY(-59.71)PVGY(-86.78)LDK 0 0 1 1 Q5J8M3 Q5J8M3 Q5J8M3 EMC4 ER membrane protein complex subunit 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.756652832031 3 698.644036 2092.91028 32420.8149228156 1.8643 0.0013025 218670 152.77 218670 152.78 851.418656958896 78.283 0.59921 78.283 78.036 78.636 0 41 20 3 0.959967487799515 0.00154710358389682 0.0288238791923953 3.965E-05 1 18340 117.21 94.556 5 8375300 8829.8 7013.8 10562 8178 6512.8 9570.6 7276.9 8220.6 7559.9 16177 8361.7 6632.3 10487 8348.2 6859.3 9544.5 7378.3 8785.6 7447.3 15423 1 1 1 1 1 1 1 1 1 1 4165 1165 3670 3905 4631 4631 2015 SDSASSEPVGIYQGFEK 17 Phospho (STY) _SDS(ph)ASSEPVGIYQGFEK_ S(0.158)DS(0.838)AS(0.001)S(0.002)EPVGIYQGFEK S(-7.24)DS(7.24)AS(-28.54)S(-26.14)EPVGIY(-133.55)QGFEK 0 0 1 0 Q05655 Q05655 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.382690429688 3 627.603178 1879.7877 35571.4495393424 1.197 0.00075126 243430 152.78 243430 152.78 780.713538729834 79.935 0.69647 79.935 79.617 80.313 0 69 23 4 0.975471768190354 0.00171041515550556 0.0195093712395641 8.0714E-11 1 18695 188.56 156.68 5 18812000 13239 6575.9 13462 6549.5 5455.7 14618 7928.8 8487.3 6143.2 14559 12528 6211.8 13449 6856 6042.4 14243 7903.2 9189.7 6137.2 13905 1 1 1 1 1 1 1 1 1 1 4166 871 3671 3906 4632 4632 1416;1417 SDSFENPVLQQHFR 14 Phospho (STY) _SDS(ph)FENPVLQQHFR_ S(0.042)DS(0.958)FENPVLQQHFR S(-13.54)DS(13.54)FENPVLQQHFR 0 0 1 0 P12956 P12956 P12956 XRCC6 X-ray repair cross-complementing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.653076171875 3 595.264831 1782.77266 37914.3689395897 1.7026 0.0010135 128330 76.388 128330 76.389 671.65263274403 71.225 0.83509 71.225 70.944 71.779 0 95 28 5 0.960993269171673 0.00301603782362866 0.0626962281762447 6.3861E-16 1 16684 227.88 206.58 2 37032000 8807.2 5908.9 9302 5904.7 10148 9316.8 10113 9352.2 6485.7 7390.8 8335.7 5581.9 9348.4 6117.8 10244 9200.7 10197 9602.3 6553.3 7175.7 1 1 1 1 1 1 1 1 1 1 4167 372 3672 3907 4633 4633 606 SDSFPER 7 Phospho (STY) _SDS(ph)FPER_ S(0.03)DS(0.97)FPER S(-15.12)DS(15.12)FPER 0 0 1 0 P18615 P18615 P18615 NELFE Negative elongation factor E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 573.755737304688 2 459.173665 916.332777 42115.1576288731 1.2535 0.00057558 249540 114.58 249540 114.58 573.754852165994 40.42 2.113 40.42 39.599 41.711 0 124 72 2 0.610103978233667 0.00121692416431307 0.0273811444354681 0.020587 1 9181 70.1 51.006 2 21696000 32794 23383 30509 23319 33557 33206 34249 30522 23440 18612 31023 22089 30891 24106 33874 32844 34533 31281 23587 18232 1 1 1 1 1 1 1 1 1 1 4168 429 3673 3908 4634 4634 695 SDSFPERR 8 Phospho (STY) _SDS(ph)FPERR_ S(0.033)DS(0.967)FPERR S(-14.61)DS(14.61)FPERR 0 0 1 1 P18615 P18615 P18615 NELFE Negative elongation factor E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 434.872894287109 3 358.485239 1072.43389 47733.5589212973 0.3685 0.0001321 213080 76.388 213090 76.388 434.872769700038 33.166 0.7553 33.166 32.528 33.284 0 57 25 3 0.739778073258456 0.00109973843104541 0.0249495155541869 0.036532 1 7391 49.3 28.523 2 4898400 15743 20186 15358 19943 16650 16915 16018 18418 22672 2695.2 14896 19068 15501 20443 16817 17114 16517 18498 22089 2964.2 1 1 1 1 1 1 1 1 1 1 4169 429 3674 3909 4635 4635 695 SDSLVVCEVDPELTEK 16 Acetyl (Protein N-term) _(ac)SDSLVVCEVDPELTEK_ 1 0 0 0 O60234 O60234 O60234 GMFG Glia maturation factor gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.684997558594 3 621.296035 1860.86627 37557.5631842407 1.2754 0.0007924 122950 76.387 122950 76.388 698.017739696394 91.207 0.51547 91.207 90.936 91.452 0 61 17 5 0.852360088748074 0.00188337463073203 0.0150083766293863 4.3448E-07 1 21235 68.944 54.86 1 41379000 11739 3494.9 13340 4148.5 11219 12014 13092 9708.3 3996.7 9548.5 11114 3305.2 13318 4346.1 11528 11680 12988 10115 4329.3 9215.7 1 1 1 1 1 1 1 1 1 1 4170 136 3675 3910 4636 4636 SDSRAQAVSEDAGGNEGR 18 Phospho (STY) _SDS(ph)RAQAVSEDAGGNEGR_ S(0.09)DS(0.91)RAQAVSEDAGGNEGR S(-10.05)DS(10.05)RAQAVS(-93.99)EDAGGNEGR 0 0 1 1 P55884 P55884 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.982543945313 3 629.260585 1884.75993 37244.4843434753 1.9194 0.0012078 121390 76.387 121390 76.388 705.647597517156 28.638 0.4612 28.638 28.405 28.866 0 51 15 4 0.977558284734362 0.0045373995961338 0.036175375062172 6.9288E-11 1 6361 183.91 168.49 3 29450000 10370 7228.6 9786 8588.1 8272.8 10937 7023.1 9415.2 7740.7 1841.4 9810.5 6836.3 9866.7 8772.8 8467.6 10842 7228.6 9558.5 7607.3 1951.8 1 1 1 1 1 1 1 1 1 1 4171 725 3676 3911 4637 4637 1207 SDSSSSLPK 9 Phospho (STY) _SDS(ph)SSSLPK_ SDS(0.842)S(0.155)S(0.002)SLPK S(-38.15)DS(7.34)S(-7.34)S(-26.65)S(-32.52)LPK 0 0 1 0 Q8NCD3 Q8NCD3 Q8NCD3 HJURP Holliday junction recognition protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.370056152344 2 494.205162 986.395771 36819.1906547114 2.4601 0.0012158 463700 229.16 463700 229.16 723.36879842131 44.625 0.54912 44.625 44.398 44.948 0 40 18 3 0.982177258978659 0.00127740268951895 0.027686732370575 0.00027335 1 10277 124.1 104.86 5 15632000 25092 32875 23464 32567 24252 24940 26013 27893 36248 7935.1 23737 31054 23734 33335 24599 25391 26675 28104 35332 8117.4 1 1 1 1 1 1 1 1 1 1 4172 1495 3677 3912 4638 4638 2746 SDYDRSR 7 Phospho (STY) _SDYDRS(ph)R_ SDYDRS(1)R S(-41.18)DY(-34.53)DRS(34.53)R 0 0 1 1 Q9BXP5 Q9BXP5 Q9BXP5 SRRT Serrate RNA effector molecule homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 604.271301269531 2 489.687471 977.360389 40804.2421212218 1.9269 0.00094357 233990 114.58 233990 114.58 604.26946085949 22.457 0.23161 22.457 22.342 22.574 0 11 7 2 0.83046923233261 0.00104936412535324 0.0203345143564334 0.055475 1 5056 45.598 26.355 3 1215900 1346 2133.2 1781.7 1953 1741.6 1467.5 2551.4 1786.9 2056.5 3359.1 1275.3 2014.1 1770 2008.5 1780.7 1502.9 2544.6 1881.3 2050.2 3204.4 1 1 1 1 1 1 1 1 1 1 4173 1865 3678 3913 4639 4639 3400 SEAAGSPDQGSTYSPAR 17 Phospho (STY) _SEAAGSPDQGSTYS(ph)PAR_ SEAAGSPDQGS(0.043)T(0.279)YS(0.677)PAR S(-106.07)EAAGS(-61.16)PDQGS(-11.93)T(-3.85)Y(-46.9)S(3.85)PAR 0 0 1 0 Q96S66 Q96S66 Q96S66 CLCC1 Chloride channel CLIC-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 995.944091796875 2 880.859795 1759.70504 31784.1709655869 1.6431 0.0014474 130080 114.58 130080 114.58 995.942836658213 33.108 0.28772 33.108 32.968 33.256 0 19 9 3 0.959983611984067 0.000465368351172109 0.0174806929106487 9.9169E-05 1 7416 116.35 71.78 6 5569400 1628.2 4334 1696.8 3847.1 2330.7 2101.2 1993 3267.8 4972.5 458.42 1540.9 4091.4 1711.8 3951.8 2325.8 2199.6 2126.5 3246.5 4780 507.28 1 1 1 1 1 1 1 1 1 1 4174 1745 3679 3914 4640 4640 3202 SECDSSPEPK 10 Phospho (STY) _SECDSS(ph)PEPK_ SECDS(0.041)S(0.959)PEPK S(-67.64)ECDS(-13.7)S(13.7)PEPK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.379577636719 2 608.215401 1214.41625 34035.1044106495 2.155 0.0013107 376780 229.16 376780 229.16 837.378351799883 32.606 0.35252 32.606 32.413 32.765 0 28 11 3 0.722957664673015 0.000794379233300781 0.014914937555653 1.4663E-09 1 7287 188.27 151.95 3 12702000 25066 17078 26958 17163 9210.6 25490 8650.8 17533 18401 2962.2 23726 16134 26818 17751 10396 25084 9099.6 17984 17743 3195 1 1 1 1 1 1 1 1 1 1 4175 2226 3680 3915 4641 4641 4077 SEDDESGAGELTR 13 Unmodified _SEDDESGAGELTR_ 0 0 0 0 P33993 P33993 P33993 MCM7 DNA replication licensing factor MCM7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.875366210938 2 683.291867 1364.56918 36653.0325286136 1.1633 0.00079486 167690 114.58 167690 114.58 797.872876146016 34.592 0.31914 34.592 34.398 34.718 0 19 10 2 0.978516284411031 0.00132419601066432 0.0186882248255023 6.473E-16 1 7741 244.95 205.24 1 33387000 19484 18046 22032 17992 21829 20427 20950 21418 19300 3646.6 18446 17047 22034 18516 22150 20386 21322 21555 19113 3929.4 1 1 1 1 1 1 1 1 1 1 4176 536 3681 3916 4642 4642 SEDFGVNEDLADSDAR 16 Unmodified _SEDFGVNEDLADSDAR_ 0 0 0 0 P04083 P04083 P04083 ANXA1 Annexin A1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 984.954711914063 2 870.371377 1738.7282 31244.6773454123 1.3973 0.0012161 131650 114.58 131650 114.58 984.95338236756 62.124 0.57139 62.124 61.833 62.405 7.1054E-15 67 19 5 0.900662927395474 0.00112417969540794 0.0213017136278075 4.4774E-81 1 14549 461.5 398.92 1 80707000 7169.4 30177 7471 29588 16324 7244.4 16049 20144 31857 10637 6785.2 28504 7613.4 30057 16054 8440.5 16783 20026 30763 10482 1 1 1 1 1 1 1 1 1 1 4177 290 3682 3917 4643 4643 SEDMPFSPK 9 Phospho (STY) _SEDMPFS(ph)PK_ SEDMPFS(1)PK S(-80.87)EDMPFS(80.87)PK 0 0 1 0 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.381652832031 2 559.217215 1116.41988 34797.2112121351 2.1985 0.0012294 409790 229.16 409790 229.16 788.380243591679 68.609 0.78911 68.609 68.272 69.061 0 64 26 3 0.87945575437171 0.0029977005293425 0.10774641288928 6.7831E-06 1 16081 147.62 111.1 2 33676000 18789 36518 18194 32887 17575 16863 17625 26931 42348 13280 17777 34477 18347 33731 17895 17769 18615 27023 40736 13128 1 1 1 1 1 1 1 1 1 1 4178 911 3683 3918 4644 4644 1502 SEDPPTTPIR 10 Phospho (STY) _SEDPPTT(ph)PIR_ SEDPPT(0.004)T(0.996)PIR S(-108.99)EDPPT(-24.44)T(24.44)PIR 0 0 1 0 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 711.349670410156 2 596.765918 1191.51728 36417.6192282288 2.0852 0.0012444 192000 114.58 192010 114.58 711.347865379424 38.783 0.86861 38.783 38.495 39.364 7.1054E-15 92 29 5 0.981308945681788 0.00242499372853477 0.0535705811445751 9.0355E-07 1 8761 169.33 129.18 3 170770000 18114 28746 16979 28485 18549 18416 16881 21354 31131 5169 17136 27154 17178 29102 18720 18955 17653 21461 30112 5361.4 1 1 1 1 1 1 1 1 1 1 4179 911 3684 3919 4645 4645 4521 SEEKEAGEI 9 Phospho (STY) _S(ph)EEKEAGEI_ S(1)EEKEAGEI S(86.91)EEKEAGEI 0 0 1 1 Q9NQ29 Q9NQ29 Q9NQ29 LUC7L Putative RNA-binding protein Luc7-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.380432128906 2 536.215727 1070.4169 35181.1855557676 1.6611 0.00089073 427370 229.16 427370 229.16 765.378929999891 50.291 0.54714 50.291 50.099 50.647 0 35 18 3 0.710382809547609 0.000845873403610962 0.0313245414444113 0.0071147 1 11716 86.911 61.525 1 13596000 19279 20747 18981 21780 24889 20268 24169 24114 22744 7808 18242 19605 19201 22275 24897 20446 24597 24274 22502 7910.2 1 1 1 1 1 1 1 1 1 1 4180 2000 3685 3920 4646 4646 3631 SEESPVYSNSSVR 13 Phospho (STY) _SEES(ph)PVYSNSSVR_ SEES(1)PVYSNSSVR S(-62.67)EES(55.28)PVY(-106.08)S(-55.54)NS(-55.28)S(-77.01)VR 0 0 1 0 Q03188 Q03188 Q03188 CENPC Centromere protein C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.39990234375 2 760.816867 1519.61918 32960.0324638771 1.4674 0.0011164 150600 114.58 150600 114.58 875.397827463921 39.464 0.34657 39.464 39.282 39.629 0 21 11 2 0.936265671066104 0.000485102818054436 0.00935874011977187 7.3594E-23 1 8966 272.74 233.93 6 9544800 10680 10798 10853 9959.6 12544 10457 13399 12603 12636 3965.8 10107 10196 10941 10285 12641 10494 13577 12678 12501 4025.9 1 1 1 1 1 1 1 1 1 1 4181 858 3686 3921 4647 4647 1386 SEGESQTVLSSGSDPK 16 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)EGESQTVLSSGSDPK_ S(0.5)EGES(0.5)QTVLSSGSDPK S(0)EGES(0)QT(-32.25)VLS(-54.78)S(-61.39)GS(-65.67)DPK 1 0 1 0 Q9UHY1 Q9UHY1 Q9UHY1 NRBP1 Nuclear receptor-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 980.4462890625 2 865.361836 1728.70912 31477.900903066 1.0693 0.0009253 132410 114.58 132410 114.58 979.943198360069 55.622 0.91035 55.622 55.307 56.217 -7.1054E-15 97 30 5 0.979523904114077 0.00122430637258425 0.0468216794789404 1.0332E-10 1 12949 91.961 78.507 6 80028000 7174.5 8449.2 7186.3 9119.9 7751.5 6465.6 8981.4 8904.7 9805.4 6662.9 6789 7985.5 7244.7 9280.4 7851 6642.4 9105.8 9038.3 9640 6480 1 1 1 1 1 1 1 1 1 1 4182 2151 3687 3922 4648 4648 3873;3874 SEGSPVLPHEPAK 13 Phospho (STY) _SEGS(ph)PVLPHEPAK_ S(0.103)EGS(0.897)PVLPHEPAK S(-9.39)EGS(9.39)PVLPHEPAK 0 0 1 0 Q9UKE5 Q9UKE5 Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.333618164063 3 476.557063 1426.64936 39174.8405134772 2.3683 0.0011286 320580 152.78 320580 152.78 629.332787610779 51.211 0.78213 51.211 50.822 51.604 0 98 26 5 0.964644190250552 0.0112520408080674 0.0775654456166204 3.9939E-05 1 11884 130.06 99.851 2 106600000 11366 51599 7843.6 47543 44275 12988 34106 31963 47904 4244.1 10742 48721 8527.4 48508 42649 14806 35583 31454 46681 4736.1 1 1 1 1 1 1 1 1 1 1 4183 2170 3688 3923 4649 4649 3909 SELGNQSPSTSSR 13 Phospho (STY) _SELGNQS(ph)PSTSSR_ SELGNQS(1)PSTSSR S(-83.73)ELGNQS(40.76)PS(-40.76)T(-68.5)S(-98.02)S(-125.39)R 0 0 1 0 Q5JTV8 Q5JTV8 Q5JTV8 TOR1AIP1 Torsin-1A-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.883605957031 2 715.301385 1428.58822 35046.4944655246 1.988 0.001422 160190 114.58 160190 114.58 829.882003049807 31.566 0.40489 31.566 31.386 31.791 0 32 13 3 0.979715456240611 0.00121151706889669 0.0273625123252373 7.5091E-16 1 7054 229.31 185.81 6 13385000 11512 11548 11732 9454.4 9703.6 11386 11241 11120 11453 2816.3 10894 10897 11779 9866.3 9988.9 11329 11374 11249 11292 2909.3 1 1 1 1 1 1 1 1 1 1 4184 1172 3689 3924 4650 4650 2029 SELNEIKENQRSPVR 15 Phospho (STY) _SELNEIKENQRS(ph)PVR_ SELNEIKENQRS(1)PVR S(-60.29)ELNEIKENQRS(60.29)PVR 0 0 1 2 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.086791992188 3 626.973828 1877.89965 35411.0847548721 2.0726 0.0012995 243670 152.78 243670 152.78 780.083317871735 49.337 0.78169 49.337 49.053 49.835 -7.1054E-15 109 26 6 0.784661880693724 0.00244545331542582 0.0420338778601073 0.015541 1 11413 75.057 55.453 2 191210000 17759 24612 17572 25314 23462 18438 22961 23110 25670 25540 16804 23254 17776 25838 23457 18895 23471 23769 25214 24584 1 1 1 1 1 1 1 1 1 1 4185 952 3690 3925 4651 4651 1586 SELSQDAEPAGSQETK 16 Phospho (STY) _SELSQDAEPAGS(ph)QETK_ SELSQDAEPAGS(1)QETK S(-74.26)ELS(-60.74)QDAEPAGS(37.01)QET(-37.01)K 0 0 1 0 Q9BVJ6 Q9BVJ6 Q9BVJ6 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.356872558594 3 586.247283 1755.72002 35854.058615853 1.6005 0.00093828 260600 152.78 260600 152.78 739.023434826821 46.488 0.48662 46.488 46.228 46.714 0 38 16 3 0.966851235505089 0.00252363014310333 0.0176529015100357 5.9625E-07 1 10710 139.44 119.35 4 17038000 12736 12211 14039 13053 10851 14520 11373 14329 14085 6073.9 12056 11540 14024 13375 11210 14498 11626 14563 13783 6050.9 1 1 1 1 1 1 1 1 1 1 4186 1844 3691 3926 4652 4652 3374 SEPHSPGIPEIFR 13 Phospho (STY) _SEPHS(ph)PGIPEIFR_ SEPHS(1)PGIPEIFR S(-41.72)EPHS(41.72)PGIPEIFR 0 0 1 0 Q8ND82 Q8ND82 Q8ND82 ZNF280C Zinc finger protein 280C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.630615234375 3 515.908096 1544.70246 40836.7429262107 1.1507 0.00059366 148060 76.388 148070 76.388 592.295887010928 75.991 0.7889 75.991 75.599 76.387 0 75 26 3 0.878849816113576 0.00397995292729373 0.0632273156819654 4.8394E-07 1 17826 148.33 123.53 2 21641000 6845.1 7948.9 5722.4 7001.6 5792.5 7272.8 6094.1 7315.6 6769.2 3081.9 6473 7503.7 5828.1 7251.2 5879 7284.2 6207.3 7429.3 6650.5 3071.3 1 1 1 1 1 1 1 1 1 1 4187 1504 3692 3927 4653 4653 2763 SEPISPPRDR 10 Phospho (STY) _S(ph)EPISPPRDR_ S(0.753)EPIS(0.247)PPRDR S(4.83)EPIS(-4.83)PPRDR 0 0 1 1 Q02078 Q02078 Q02078 MEF2A Myocyte-specific enhancer factor 2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 488.245635986328 3 411.858965 1232.55507 45357.9990388345 0.54826 0.00022581 185470 76.387 185470 76.387 488.246070658782 36.878 1.3035 36.878 35.88 37.183 -7.1054E-15 91 44 3 0.785894554342865 0.000754637073260959 0.00746491601689913 0.041792 1 8275 40.725 19.261 2 11449000 15335 12682 18215 11761 15059 15667 15242 13646 14392 3439.5 14522 11975 18137 12195 15470 15511 15483 13870 14237 3554.6 1 1 1 1 1 1 1 1 1 1 4188 848 3693 3928 4654 4654 1369 SEPQPEEGSPAGGQK 15 Phospho (STY) _SEPQPEEGS(ph)PAGGQK_ SEPQPEEGS(1)PAGGQK S(-88.36)EPQPEEGS(88.36)PAGGQK 0 0 1 0 Q9Y6K1 Q9Y6K1 Q9Y6K1 DNMT3A DNA (cytosine-5)-methyltransferase 3A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.330810546875 3 526.554158 1576.64065 36938.8212782764 1.3844 0.00072897 290140 152.78 290140 152.78 679.330357067593 35.515 0.43827 35.515 35.299 35.737 0 38 14 3 0.688086517129676 0.00174328585285232 0.031390898105143 1.2579E-05 1 7979 136.04 118.55 2 16712000 10002 7511.7 9471.4 7479.4 15688 10589 13497 11368 7456.9 3124 9462 7095.9 9639.7 7731.5 15517 10491 13679 11467 7614 3204.7 1 1 1 1 1 1 1 1 1 1 4189 2315 3694 3929 4655 4655 4270 SEPVKEESSELEQPFAQDTSSVGPDR 26 Unmodified _SEPVKEESSELEQPFAQDTSSVGPDR_ 0 0 0 1 Q14151;Q15424 Q14151;Q15424 Q15424 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1103.21704101563 3 950.108823 2847.30464 29525.9091702564 1.8045 0.0017145 160800 152.78 160800 152.78 1103.21771867097 67.95 0.4486 67.95 67.675 68.124 0 49 14 4 0.961669491850858 0.00137669517389707 0.0422847779505883 4.9362E-25 1 15977 283.37 244.78 1 12447000 5102.2 5833.1 5787.7 6940.2 5203.8 4966.6 6089.9 7111.1 6673.7 12372 4830.5 5516.6 5783 7026.7 5328.4 5116.6 6172.4 7422.7 6560.2 11815 1 1 1 1 1 1 1 1 1 1 4190 1076;988 3695 3930 4656 4656 SEPVSPK 7 Phospho (STY) _SEPVS(ph)PK_ SEPVS(1)PK S(-33.93)EPVS(33.93)PK 0 0 1 0 Q3L8U1 Q3L8U1 Q3L8U1 CHD9 Chromodomain-helicase-DNA-binding protein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.349609375 2 412.183501 822.35245 39444.4519173812 2.7397 0.0011293 555980 229.17 555980 229.17 641.348753631229 38.706 0.37698 38.706 38.467 38.844 0 25 12 3 0.773770841369159 0.000916257557704015 0.0211108931300541 0.040316 1 8783 56.013 26.675 2 10464000 19462 29049 19465 27852 25956 21342 22140 23183 28554 3295.3 18416 27435 19673 28566 25909 21712 22895 23282 27902 3639.5 1 1 1 1 1 1 1 1 1 1 4191 1128 3696 3931 4657 4657 1967 SEPVSPPRDR 10 Phospho (STY) _SEPVS(ph)PPRDR_ SEPVS(1)PPRDR S(-34.51)EPVS(34.51)PPRDR 0 0 1 1 Q06413 Q06413 Q06413 MEF2C Myocyte-specific enhancer factor 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 483.575286865234 3 407.187082 1218.53942 45303.5832793293 1.0975 0.00044687 187600 76.387 187600 76.388 483.574419520922 31.315 1.4196 31.315 30.283 31.702 0 106 47 3 0.644168105694831 0.00141554260433774 0.0549653049738102 0.0073365 1 6892 77.894 51.956 2 17003000 12023 8661.8 11598 9499.3 10423 11573 11101 10993 10457 2641.1 11376 8187.3 11690 9735.8 10656 11505 11250 11129 10346 2741.3 1 1 1 1 1 1 1 1 1 1 4192 877 3697 3932 4658 4658 1421 SEPVSPSRER 10 Phospho (STY) _SEPVS(ph)PSRER_ SEPVS(0.991)PS(0.009)RER S(-45.58)EPVS(20.42)PS(-20.42)RER 0 0 1 1 Q14814 Q14814 Q14814 MEF2D Myocyte-specific enhancer factor 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 484.907196044922 3 408.51872 1222.53433 45153.1987848168 0.72882 0.00029774 186990 76.388 186990 76.388 484.906721649262 26.396 0.43654 26.396 26.131 26.568 -3.5527E-15 45 14 4 0.893812252186788 0.00374450191149841 0.0514817807886251 0.0092466 1 5868 71.558 44.885 3 17502000 16260 5095.9 16911 6517.4 9164.2 18012 12279 12573 4754.7 3177.2 15389 4822 16902 6789.8 9794.2 17480 12143 12918 5010.5 3282.7 1 1 1 1 1 1 1 1 1 1 4193 1029 3698 3933 4659 4659 1764 SEQDQAENEGEDSAVLMER 19 Unmodified _SEQDQAENEGEDSAVLMER_ 0 0 0 0 Q99613;B5ME19 Q99613 Q99613 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.691711425781 3 712.97105 2135.89132 34539.7533358483 2.0885 0.001489 107140 76.387 107140 76.389 789.692888206155 53.635 0.50287 53.635 53.385 53.888 0 52 16 4 0.906297249272113 0.00234134281383862 0.0154768011369433 6.7666E-16 1 12487 213.64 181.86 1 27856000 11475 10254 11183 10073 9671.2 10802 7985.4 10236 10936 9702.8 10857 9685.7 11256 10365 9882.5 10806 8290.2 10581 10665 9373.2 1 1 1 1 1 1 1 1 1 1 4194 18 3699 3934 4660 4660 SESENWR 7 Phospho (STY) _SES(ph)ENWR_ S(0.001)ES(0.999)ENWR S(-29.49)ES(29.49)ENWR 0 0 1 0 Q6Y7W6 Q6Y7W6 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.764099121094 2 494.182021 986.34949 39992.408240996 1.8515 0.00091498 231860 114.58 231860 114.58 608.763155007042 38.538 0.72519 38.538 38.297 39.022 0 62 24 4 0.851310966400659 0.00336344970269402 0.0747931268737287 0.00091971 1 8760 124.81 84.957 2 46898000 46004 23891 44119 24551 52804 48525 56326 44423 23357 4711.4 43525 22573 44647 25553 53092 47526 56263 44861 24445 5464.4 1 1 1 1 1 1 1 1 1 1 4195 1288 3700 3935 4661 4661 2298 SESFRFQQENLK 12 Phospho (STY) _SES(ph)FRFQQENLK_ S(0.045)ES(0.955)FRFQQENLK S(-13.32)ES(13.32)FRFQQENLK 0 0 1 1 Q6ZUJ8 Q6ZUJ8 Q6ZUJ8 PIK3AP1 Phosphoinositide 3-kinase adapter protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.685974121094 3 531.575005 1591.70319 37360.9481076589 1.6951 0.00090109 287400 152.78 287400 152.78 684.350121791267 65.147 0.57593 65.147 64.851 65.427 0 72 19 5 0.991343703834061 0.0053934673010864 0.060977444056966 9.8239E-06 1 15289 136.34 113.54 2 37087000 40522 5349.7 44683 5990.9 8262.8 40150 6516.5 18739 5655.5 6314.2 38360 5057.3 44305 6661 10510 38463 6693.5 19816 5616.8 6379.2 1 1 1 1 1 1 1 1 1 1 4196 1303 3701 3936 4662 4662 2326 SESFRFQQENLKR 13 Phospho (STY) _SES(ph)FRFQQENLKR_ S(0.205)ES(0.795)FRFQQENLKR S(-5.89)ES(5.89)FRFQQENLKR 0 0 1 2 Q6ZUJ8 Q6ZUJ8 Q6ZUJ8 PIK3AP1 Phosphoinositide 3-kinase adapter protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.790466308594 4 437.958351 1747.8043 42935.3305364821 1.2353 0.00054101 261630 114.58 261630 114.58 552.539244348621 56.206 0.47536 56.206 55.95 56.425 0 45 15 4 0.826446085321735 0.000605104291193442 0.0130055604233885 0.037027 1 13163 47.754 31.812 2 17988000 7160.6 3860.3 7873.4 3974 3817.4 8089 4612.8 4540.1 3775.7 1927.8 6778.4 3647.4 7838.9 4139.5 4123.9 7883.5 4634.3 4749.7 3761 1920.3 1 1 1 1 1 1 1 1 1 1 4197 1303 3702 3937 4663 4663 2326 SESLDPDSSMDTTLILK 17 Phospho (STY) _SES(ph)LDPDSSMDTTLILK_ S(0.149)ES(0.851)LDPDSSMDTTLILK S(-7.57)ES(7.57)LDPDS(-42.72)S(-62.08)MDT(-114.32)T(-114.57)LILK 0 0 1 0 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.400390625 3 644.623362 1930.84826 35105.018627055 1.9929 0.0012847 237000 152.78 237000 152.78 797.732021961212 94.566 0.6595 94.566 94.284 94.943 1.4211E-14 66 22 4 0.678288598331814 0.00260470126766058 0.0687329428770323 4.1798E-07 1 21990 139.11 115.5 6 14697000 5355.2 5937.1 5744.8 5308.2 5747.4 5038.1 6129.2 6813.5 6422 28559 5068.9 5605 5763 5484.4 5838 5138 6228.7 7626.2 6324.2 27049 1 1 1 1 1 1 1 1 1 1 4198 1180 3703 3938 4664 4664 2047 SESLIDASEDSQLEAAIR 18 Phospho (STY) _SES(ph)LIDASEDSQLEAAIR_ S(0.159)ES(0.841)LIDASEDSQLEAAIR S(-7.22)ES(7.22)LIDAS(-89.71)EDS(-186.35)QLEAAIR 0 0 1 0 O94888 O94888 O94888 UBXN7 UBX domain-containing protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.694641113281 3 671.97193 2012.89396 36128.0834681387 1.6217 0.0010897 113680 76.387 113680 76.388 748.359232682823 84.466 1.3742 84.466 83.927 85.301 1.4211E-14 134 47 4 0.86642935160552 0.00498669992945171 0.0409650235999171 9.3305E-17 2 19723 246.32 209.64 4 35722000 8563.7 9763 7600.4 11182 12835 9907.5 12028 11900 11657 39761 8099.8 9230.9 7771.1 11374 12704 10088 12272 13057 11518 37715 2 2 2 2 2 2 2 2 2 2 4199 225 3704 3939 4665;4666 4665 389 SESLSEK 7 Phospho (STY) _SES(ph)LSEK_ S(0.029)ES(0.964)LS(0.007)EK S(-15.2)ES(15.2)LS(-21.17)EK 0 0 1 0 Q9UMS6 Q9UMS6 Q9UMS6 SYNPO2 Synaptopodin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.340698242188 2 430.175873 858.337194 37245.8901676236 2.6876 0.0011561 532720 229.16 532720 229.16 659.337192468622 41.942 0.45362 41.942 41.77 42.223 -7.1054E-15 30 15 3 0.819183371141406 0.00186981286766607 0.0477023592845467 0.047323 1 9583 52.549 10.825 3 15572000 54929 20166 48939 21930 18961 57972 22109 33884 22195 11988 51955 19060 49262 22989 21056 56220 22356 35283 21896 12073 1 1 1 1 1 1 1 1 1 1 4200 2199 3705 3940 4667 4667 3981 SESLSNCSIGK 11 Phospho (STY) _SES(ph)LSNCSIGK_ S(0.111)ES(0.862)LS(0.027)NCSIGK S(-8.9)ES(8.9)LS(-15.01)NCS(-95.35)IGK 0 0 1 0 Q92625 Q92625 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 573.950134277344 3 421.175854 1260.50573 42135.2675655535 1.0055 0.00042349 362740 152.78 362740 152.78 573.9510999202 53.166 0.4033 53.166 53.043 53.447 0 25 13 3 0.955129601912974 0.000775787943548324 0.00452846054853967 4.7429E-05 1 12401 128.76 106.55 4 27024000 14676 11161 18801 10491 10359 17078 9614.1 12565 11971 2793.9 13902 10539 18589 10918 11002 16773 9886.6 12863 11712 2921.6 1 1 1 1 1 1 1 1 1 1 4201 1613 3706 3941 4668 4668 2976 SESLTAESR 9 Phospho (STY) _SES(ph)LTAESR_ S(0.004)ES(0.95)LT(0.047)AESR S(-24.07)ES(13.08)LT(-13.08)AES(-51.89)R 0 0 1 0 Q15751 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 644.803161621094 2 530.221343 1058.42813 39067.6589638303 1.0885 0.00057716 216100 114.58 216100 114.58 644.802556074574 34.891 0.31715 34.891 34.746 35.064 0 14 10 2 0.344613184177034 0.000161210468123466 0.00293868278007703 0.012372 1 7855 77.867 45.833 4 15879000 14756 19578 15014 17960 19853 16901 20063 19403 20774 4290.7 13964 18485 15163 18522 19865 17027 20431 19495 20467 4489.3 1 1 1 1 1 1 1 1 1 1 4202 1092 3707 3942 4669 4669 1896 SESLVVCDVAEDLVEK 16 Acetyl (Protein N-term) _(ac)SESLVVCDVAEDLVEK_ 1 0 0 0 P60983 P60983 P60983 GMFB Glia maturation factor beta MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.354309082031 3 611.964397 1832.87136 NaN NaN NaN NaN NaN NaN NaN NaN 101.62 1 101.62 101.12 102.12 0 NaN NaN NaN 0.017758 1 23899 44.005 21.127 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4203 744 3708 3943 4670 4670 SESPCLRDSPDRR 13 Phospho (STY) _SESPCLRDS(ph)PDRR_ S(0.075)ES(0.04)PCLRDS(0.885)PDRR S(-10.7)ES(-13.45)PCLRDS(10.7)PDRR 0 0 1 2 Q9UPW6 Q9UPW6 Q9UPW6 SATB2 DNA-binding protein SATB2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.627197265625 3 552.238287 1653.69303 40151.0328787448 1.9551 0.0010797 138320 76.388 138330 76.389 628.626347945682 28.312 0.48726 28.312 28.122 28.609 0 53 16 6 0.903358084540193 0.00324981630002628 0.0618330798959948 0.031276 1 6309 59.585 31.258 3 13316000 11256 7714.3 9453.2 6667 4008 10245 4508.5 6895.1 6843.2 2202.6 10645 7281.5 9556.7 6966.9 4398.1 10072 4629.1 7112.5 6653.2 2233.6 1 1 1 1 1 1 1 1 1 1 4204 2222 3709 3944 4671 4671 4025 SESPKEPEQLR 11 Phospho (STY) _SES(ph)PKEPEQLR_ SES(1)PKEPEQLR S(-50.75)ES(50.75)PKEPEQLR 0 0 1 1 P09651 P09651 P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 919.477722167969 2 690.313764 1378.61297 32602.0720028225 1.4605 0.0010082 331970 229.16 331970 229.16 919.476235053783 40.668 0.92637 40.668 40.384 41.311 -7.1054E-15 90 31 5 0.996049557874282 0.00294345251678411 0.110235657107628 1.4639E-10 1 9223 204.07 178.03 2 288930000 20575 36259 20190 32645 24389 19485 26232 28700 35811 5922.7 19468 34232 20407 33528 24537 20244 26876 28609 34928 6241.2 1 1 1 1 1 1 1 1 1 1 4205 341 3710 3945 4672 4672 558 SESPKEPEQLRK 12 Phospho (STY) _SES(ph)PKEPEQLRK_ S(0.008)ES(0.992)PKEPEQLRK S(-21.08)ES(21.08)PKEPEQLRK 0 0 1 2 P09651 P09651 P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.741271972656 3 503.243256 1506.70794 36617.2797689693 2.0187 0.0010159 455370 229.16 455370 229.16 732.740314358732 43.042 1.2568 43.042 42.708 43.965 7.1054E-15 136 42 6 0.809488977734329 0.00392850310159097 0.0219996588173192 0.0059877 1 9801 90.453 63.304 2 772970000 32252 47212 36093 48056 38470 31392 40673 41096 53976 8425.1 30533 44604 36156 49023 38943 32347 41660 41100 52694 8884.3 1 1 1 1 1 1 1 1 1 1 4206 341 3711 3946 4673 4673 558 SESPPAELPSLR 12 Phospho (STY) _SES(ph)PPAELPSLR_ S(0.001)ES(0.999)PPAELPSLR S(-30.34)ES(30.34)PPAELPS(-96.62)LR 0 0 1 0 Q14669 Q14669 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.402282714844 2 681.818682 1361.62281 34116.373979863 1.9277 0.0013143 168050 114.58 168060 114.58 796.400466778169 67.562 1.3472 67.562 66.807 68.154 0 79 45 2 0.990542605983265 0.00576673901701267 0.385547180094337 1.5935E-22 1 15821 251.87 201.51 3 62414000 24220 15589 25121 16555 21286 25689 23018 21692 17221 14195 22922 14732 25200 17086 21846 25318 23189 22341 17238 13869 1 1 1 1 1 1 1 1 1 1 4207 1014 3712 3947 4674 4674 1723 SESPPPLSDPK 11 Phospho (STY) _SES(ph)PPPLSDPK_ SES(1)PPPLSDPK S(-41.4)ES(41.4)PPPLS(-65.84)DPK 0 0 1 0 Q15059 Q15059 Q15059 BRD3 Bromodomain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.437316894531 2 617.273576 1232.5326 33939.9655828683 2.1073 0.0013008 371250 229.16 371250 229.16 846.436778583396 54.063 1.2379 54.063 53.235 54.473 7.1054E-15 107 41 4 0.982236688005956 0.0010944198067582 0.0209277588428445 5.56E-10 1 12539 181.49 140.2 3 40764000 22982 15464 24138 14138 24550 23380 25523 23690 14598 13152 21751 14601 24246 14746 24893 23051 25635 24147 14867 12932 1 1 1 1 1 1 1 1 1 1 4208 1055 3713 3948 4675 4675 1822 SESPVPQNEK 10 Phospho (STY) _SES(ph)PVPQNEK_ S(0.217)ES(0.783)PVPQNEK S(-5.57)ES(5.57)PVPQNEK 0 0 1 0 Q9UIF8 Q9UIF8 Q9UIF8 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.615783691406 3 398.839459 1193.49655 42618.3628495193 0.69865 0.00027865 383050 152.78 383050 152.78 551.614828991027 37.03 0.23302 37.03 36.895 37.128 0 13 7 2 0.7937653153357 0.000241111745094529 0.00948937550751596 0.025616 1 8371 53.388 28.533 2 5784100 10380 8815.5 9609 8590.7 9151.3 9669.6 8198.4 9216.5 8299 2395 9819.3 8326.4 9712.6 8851.7 9300.4 9643 8393.8 9334.5 8184.4 2468.5 1 1 1 1 1 1 1 1 1 1 4209 2156 3714 3949 4676 4676 3882 SESSGILPNTTDMR 14 Phospho (STY) _SESS(ph)GILPNTTDMR_ S(0.003)ES(0.206)S(0.791)GILPNT(0.001)TDMR S(-24.77)ES(-5.84)S(5.84)GILPNT(-31.01)T(-35.95)DMR 0 0 1 0 Q92667 Q92667 Q92667 AKAP1 A-kinase anchor protein 1, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 909.423645019531 2 794.339652 1586.66475 32232.3974614783 1.6483 0.0013093 144250 114.58 144250 114.58 908.920865798092 65.233 0.6063 65.233 64.966 65.573 0 48 20 3 0.860567353544005 0.00117356329928969 0.058928570742638 0.00016274 1 15316 119.4 96.918 5 14007000 9543.8 10421 10860 12539 9999 10939 9760.5 11202 12151 16323 9035.8 9856.6 10849 12720 10197 11070 10012 11718 11888 15629 1 1 1 1 1 1 1 1 1 1 4210 1614 3715 3950 4677 4677 2978 SESSNNR 7 Phospho (STY) _SESS(ph)NNR_ S(0.007)ES(0.371)S(0.622)NNR S(-19.24)ES(-2.24)S(2.24)NNR 0 0 1 0 Q8NDV7 Q8NDV7 Q8NDV7 TNRC6A Trinucleotide repeat-containing gene 6A protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.742736816406 2 437.158546 872.302539 42060.8445078263 1.2787 0.00055898 262110 114.58 262110 114.58 551.742052797794 39.405 0.66161 39.405 39.141 39.803 0 52 22 3 0.918336133907915 0.00371420382479559 0.0837964614338956 0.039466 1 8931 56.434 16.484 3 67836000 18565 23006 16151 24017 26113 15748 27503 23813 23731 1865.7 17558 21739 16526 24466 25927 16258 27825 23630 23575 2307.9 1 1 1 1 1 1 1 1 1 1 4211 1509 3716 3951 4678 4678 2773 SESSSKSSQPLASK 14 Acetyl (Protein N-term),Phospho (STY) _(ac)SESSSKS(ph)SQPLASK_ SESSS(0.006)KS(0.619)S(0.372)QPLAS(0.002)K S(-53.12)ES(-41.85)S(-32.76)S(-19.81)KS(2.21)S(-2.21)QPLAS(-24.11)K 1 0 1 1 P17096 P17096 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.342712402344 3 515.566175 1543.6767 37761.4167682061 1.5121 0.00077961 296330 152.78 296330 152.78 668.341636109054 45.344 1.0229 45.344 44.738 45.761 -7.1054E-15 104 34 6 0.995125119237207 0.0117173503274871 0.2235849377787 5.8336E-11 1 10391 92.633 76.327 7 457500000 17359 21841 16822 17716 66271 18023 78569 36829 15267 2808.3 16424 20609 17599 18447 64446 18293 77653 36298 17749 3496.7 1 1 1 1 1 1 1 1 1 1 4212 415 3717 3952 4679 4679 672;673;674 SESSSKSSQPLASK 14 Acetyl (Protein N-term),Phospho (STY) _(ac)SESS(ph)SKSSQPLASK_ S(0.02)ES(0.079)S(0.445)S(0.445)KS(0.01)S(0.002)QPLASK S(-13.55)ES(-7.51)S(0)S(0)KS(-16.27)S(-24.55)QPLAS(-56.07)K 1 0 1 1 P17096 P17096 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1002.00738525391 2 772.845625 1543.6767 31503.4286847505 1.3245 0.0010236 296520 229.16 296520 229.16 1002.5082921968 46.582 0.54391 46.582 46.198 46.742 0 41 18 3 0.969683757247537 0.000788259431390613 0.00967171829299192 7.0804E-07 1 10723 67.115 28.311 7 18816000 13284 15433 11894 13317 14131 12870 15634 15172 14093 4103.4 12565 14567 12087 13796 14228 12957 15800 15253 13971 4214.9 1 1 1 1 1 1 1 1 1 1 4213 415 3717 3952 4680 4680 672;673;674 SETAPAAPAAAPPAEK 16 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)ETAPAAPAAAPPAEK_ S(0.5)ET(0.5)APAAPAAAPPAEK S(0)ET(0)APAAPAAAPPAEK 1 0 1 0 P16403 P16403 P16403 HIST1H1C Histone H1.2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.635131835938 3 534.246666 1599.71817 40099.0272433029 1.1739 0.00062715 142980 76.387 142980 76.388 610.634199147236 50.061 0.79353 50.061 49.6 50.394 7.1054E-15 110 26 6 0.968571127819742 0.0104998931074221 0.19161978412578 2.8896E-07 1 11590 42.059 6.4191 2 350990000 14304 22500 17933 24496 14740 13939 12685 20463 24253 1495.7 13549 21266 17806 24860 15128 14527 13327 20318 23440 1882 1 1 1 1 1 1 1 1 1 1 4214 409 3718 3953 4681 4681 656;4408 SETAPAAPAAPAPAEKTPVK 20 Phospho (STY) _SETAPAAPAAPAPAEKT(ph)PVK_ SETAPAAPAAPAPAEKT(1)PVK S(-105.56)ET(-90.78)APAAPAAPAPAEKT(90.78)PVK 0 0 1 1 P10412 P10412 P10412 HIST1H1E Histone H1.4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 891.161376953125 3 661.997751 1982.97142 33525.8759799392 2.7476 0.0018189 346170 229.16 346170 229.16 891.494711428556 51.241 0.38237 51.241 51.021 51.403 0 40 12 4 0.967491633425571 0.00200764117543641 0.0300609311375212 6.4436E-08 1 11902 170.27 137.27 3 24132000 23032 14029 22613 13018 11190 20008 10934 15081 13604 6243.8 21793 13247 22654 13540 12029 19693 11215 15506 13309 6228.3 1 1 1 1 1 1 1 1 1 1 4215 353 3719 3954 4682 4682 4387;4388 SETAPAAPAAPAPAEKTPVK 20 Acetyl (Protein N-term),Phospho (STY) _(ac)SETAPAAPAAPAPAEKT(ph)PVK_ SETAPAAPAAPAPAEKT(1)PVK S(-65.27)ET(-65.27)APAAPAAPAPAEKT(65.27)PVK 1 0 1 1 P10412 P10412 P10412 HIST1H1E Histone H1.4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.113525390625 3 676.001272 2024.98199 33929.8708977671 1.3159 0.00088954 226000 152.78 226000 152.78 829.111228552045 54.439 1.3888 54.439 54.089 55.478 0 205 47 7 0.987762389133425 0.0125596086006208 0.177307476961038 3.6146E-11 2 12633 126.96 113.08 3 3678000000 35589 33872 34421 32739 39704 32062 38950 38684 35421 43898 33672 31992 34790 33673 39966 32334 39587 39869 35100 42230 2 2 2 2 2 2 2 2 2 2 4216 353 3719 3955 4683;4684 4683 4387;4388 SETAPAAPAAPAPAEKTPVK 20 Acetyl (Protein N-term),2 Phospho (STY) _(ac)SET(ph)APAAPAAPAPAEKT(ph)PVK_ S(0.434)ET(0.566)APAAPAAPAPAEKT(0.999)PVK S(-1.16)ET(1.16)APAAPAAPAPAEKT(30.43)PVK 1 0 2 1 P10412 P10412 P10412 HIST1H1E Histone H1.4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.767761230469 3 702.656716 2104.94832 33696.7913359046 1.6817 0.0011816 217430 152.78 217430 152.78 855.76625838822 57.041 0.83334 57.041 56.813 57.646 -7.1054E-15 61 28 3 0.653672101319408 0.00178315696947127 0.010688779048147 2.0155E-07 1 13328 74.516 63.882 3 28863000 12470 10409 13650 11662 8495.2 11886 7760.9 11783 12921 12489 11804 9840.6 13612 11901 8919.8 11926 8076.5 12199 12530 12033 1 1 1 1 1 1 1 1 1 1 4217 353 3719 3956 4685 4685 4387;4388 SETAPAAPAAPAPAEKTPVKK 21 Acetyl (Protein N-term),Phospho (STY) _(ac)SETAPAAPAAPAPAEKT(ph)PVKK_ S(0.022)ET(0.022)APAAPAAPAPAEKT(0.957)PVKK S(-16.47)ET(-16.47)APAAPAAPAPAEKT(16.47)PVKK 1 0 1 2 P10412 P10412 P10412 HIST1H1E Histone H1.4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 948.197692871094 3 718.699593 2153.07695 32250.1902004259 0.94478 0.00067901 318860 229.16 318860 229.16 948.197107006178 52.056 0.6303 52.056 51.776 52.406 7.1054E-15 103 21 7 0.978238989588519 0.00985593632549272 0.0317683937690487 2.7048E-11 1 12074 117.96 108.63 3 451530000 52015 41210 50499 37286 19832 49786 20817 38554 42530 5032 49214 38907 50563 38725 21971 49214 21737 39260 41043 5630.5 1 1 1 1 1 1 1 1 1 1 4218 353 3720 3957 4686 4686 4387;4388 SETAPAETATPAPVEK 16 Acetyl (Protein N-term) _(ac)SETAPAETATPAPVEK_ 1 0 0 0 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 935.986938476563 2 820.904325 1639.7941 31679.6230857568 1.043 0.00085621 139580 114.58 139580 114.58 935.485027485044 51.744 0.28836 51.744 51.575 51.863 7.1054E-15 15 9 3 0.841560531920319 0.000164541528194031 0.00114857358241069 3.0948E-07 1 12036 85.845 63.759 1 13105000 6064.9 5076.2 8214.6 4962.9 6468.4 7114.4 8178.5 6378.6 5245 9185.5 5747 4794.7 8129.9 5137.2 6688.6 7043.1 8162.5 6703.5 5299.6 8796.9 1 1 1 1 1 1 1 1 1 1 4219 407 3721 3958 4687 4687 SETAPAETATPAPVEK 16 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)ETAPAETATPAPVEK_ S(0.5)ET(0.5)APAETATPAPVEK S(0)ET(0)APAET(-34.52)AT(-47.3)PAPVEK 1 0 1 0 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 975.973388671875 2 860.88749 1719.76043 31462.5393036321 1.1695 0.0010068 133100 114.58 133100 114.58 975.469833172267 55.368 1.9018 55.368 54.639 56.541 0 201 64 6 0.866241524505165 0.00311619189425153 0.0475158417990244 1.3062E-07 2 12876 103.88 91.833 4 450300000 38860 22955 40187 26955 36780 37736 40375 37224 27586 17113 36776 21708 40354 27606 37564 37369 40575 37874 27762 16975 2 2 2 2 2 2 2 2 2 2 4220 407 3721 3959 4688;4689 4688 651;4402 SETAPAETATPAPVEKSPAK 20 Phospho (STY) _SETAPAETATPAPVEKS(ph)PAK_ SETAPAETATPAPVEKS(1)PAK S(-167.15)ET(-152.28)APAET(-64.72)AT(-37.69)PAPVEKS(37.69)PAK 0 0 1 1 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 917.494018554688 3 687.996187 2060.96673 32713.731921974 2.3549 0.0016202 333090 229.16 333090 229.16 917.493634047472 49.754 0.58908 49.754 49.481 50.07 0 90 19 6 0.860631401596494 0.00523135668435369 0.0236942250139315 6.2727E-23 2 11513 256.12 226.02 5 266690000 109790 36337 111740 37551 46733 109540 50555 68976 42004 19534 103900 34333 111610 39639 51309 106110 51043 71349 41808 19990 2 2 2 2 2 2 2 2 2 2 4221 407 3722 3960 4690;4691 4690 651;652;4402 SETAPAETATPAPVEKSPAK 20 Phospho (STY) _SETAPAETATPAPVEKS(ph)PAK_ SETAPAETATPAPVEKS(1)PAK S(-212.15)ET(-207.06)APAET(-132.21)AT(-63.94)PAPVEKS(63.94)PAK 0 0 1 1 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.372924804688 4 516.248959 2060.96673 37010.4095054022 2.2758 0.0011749 332930 171.87 332930 171.87 688.372314322257 49.76 0.61745 49.76 49.453 50.07 0 88 20 5 0.968436720715827 0.0131295839618995 0.0745233360969566 6.043E-23 1 11518 263.54 241.95 5 345940000 62478 16606 67075 13840 29291 61659 30590 38919 17572 6543.4 59137 15671 66816 15148 31961 59397 30719 40117 17890 7062.1 1 1 1 1 1 1 1 1 1 1 4222 407 3722 3960 4692 4692 651;652;4402 SETAPAETATPAPVEKSPAK 20 Acetyl (Protein N-term),Phospho (STY) _(ac)SETAPAETATPAPVEKS(ph)PAK_ SETAPAETATPAPVEKS(1)PAK S(-132.09)ET(-132.09)APAET(-81.46)AT(-53.36)PAPVEKS(53.36)PAK 1 0 1 1 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.110900878906 3 701.999708 2102.9773 33442.625636511 1.0548 0.00074049 217630 152.78 217630 152.78 855.109521234218 52.993 3.1289 52.993 52.378 55.507 -7.1054E-15 416 108 8 0.997581413002004 0.0791833811814672 0.869400536400652 1.3419E-31 3 12294 225.2 213.07 5 25829000000 334380 56256 362430 58507 106820 315000 132280 174580 60324 43106 316520 53156 360250 64057 123780 302610 131460 181860 62573 44630 3 3 3 3 3 3 3 3 3 3 4223 407 3722 3961 4693;4694;4695 4693 651;652;4402 SETAPAETATPAPVEKSPAK 20 Acetyl (Protein N-term),Phospho (STY) _(ac)SETAPAETATPAPVEKS(ph)PAK_ SETAPAETATPAPVEKS(1)PAK S(-102.15)ET(-102.15)APAET(-47.44)AT(-36.65)PAPVEKS(36.65)PAK 1 0 1 1 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.110290527344 3 701.999708 2102.9773 33711.075170982 1.1641 0.00081721 217630 152.78 217630 152.78 855.109497501179 54.862 0.97805 54.862 54.415 55.393 0 47 33 2 0.350158766890182 0.00103198976797048 0.00470244019101546 2.6864E-08 2 12828 131.04 118.56 5 26465000 31810 20985 35261 31766 20551 45789 19120 23895 16026 25332 30113 19885 35124 32184 21701 45044 19446 25581 15944 24406 2 2 2 2 2 2 2 2 2 2 4224 407 3722 3961 4696;4697 4696 651;652;4402 SETAPAETATPAPVEKSPAK 20 Acetyl (Protein N-term),2 Phospho (STY) _(ac)SET(ph)APAETATPAPVEKS(ph)PAK_ S(0.386)ET(0.614)APAETATPAPVEKS(1)PAK S(-2.02)ET(2.02)APAET(-61.99)AT(-49.75)PAPVEKS(49.75)PAK 1 0 2 1 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.431579589844 3 728.655152 2182.94363 32702.9522442621 1.7001 0.0012388 209670 152.77 209670 152.78 881.764561219264 56.067 0.73927 56.067 55.833 56.572 0 77 24 4 0.975584814560357 0.00203801477122297 0.019686523572207 7.2691E-12 1 13057 154.14 146.99 10 51455000 14813 6619.3 14845 6346.8 9772.4 14528 9216.3 9993.7 6130.1 8209 14017 6251.4 14883 6664.8 10206 14155 9323.6 10447 6179.5 7961 1 1 1 1 1 1 1 1 1 1 4225 407 3722 3962 4698 4698 651;652;4402 SETAPAETATPAPVEKSPAKK 21 Acetyl (Protein N-term),Phospho (STY) _(ac)SETAPAETATPAPVEKS(ph)PAKK_ SETAPAETATPAPVEKS(1)PAKK S(-97.84)ET(-97.84)APAET(-61.1)AT(-38.05)PAPVEKS(38.05)PAKK 1 0 1 2 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 974.196411132813 3 744.698029 2231.07226 31808.3453661117 1.1993 0.00089314 307730 229.16 307730 229.16 974.195938527691 50.788 1.0106 50.788 50.449 51.459 7.1054E-15 158 34 8 0.992189782808288 0.00427940859167287 0.0432701475790758 5.9023E-17 1 11764 190.33 182.97 5 1023200000 43578 7587.7 44630 7857.6 19497 41440 19070 25997 9113.1 7724.5 41240 7169.3 44571 8591.1 21254 39859 19160 26908 9414.2 7875.2 1 1 1 1 1 1 1 1 1 1 4226 407 3723 3963 4699 4699 651;652;4402 SETAPAETATPAPVEKSPAKK 21 Acetyl (Protein N-term),2 Phospho (STY) _(ac)SET(ph)APAETATPAPVEKS(ph)PAKK_ S(0.406)ET(0.594)APAETAT(0.004)PAPVEKS(0.996)PAKK S(-1.65)ET(1.65)APAET(-38.76)AT(-24.34)PAPVEKS(24.34)PAKK 1 0 2 2 P16401 P16401 P16401 HIST1H1B Histone H1.5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1000.85186767578 3 771.353473 2311.03859 31753.9159435959 2.3001 0.0017742 297090 229.16 297090 229.16 1000.84966228276 53.893 0.49169 53.893 53.656 54.148 7.1054E-15 40 16 4 0.952116938474424 0.0014435872094707 0.0125541143605168 2.4143E-11 1 12567 132.78 124.59 10 9658300 10245 2974.2 10475 3471.1 6086.1 11327 7060.5 6664.8 3588.3 4712.1 9695.2 2812.5 10483 3659.9 6445.8 10954 7045.1 7008 3687.8 4591.3 1 1 1 1 1 1 1 1 1 1 4227 407 3723 3964 4700 4700 651;652;4402 SETAPLAPTIPAPAEK 16 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)ETAPLAPTIPAPAEK_ S(0.5)ET(0.5)APLAPTIPAPAEK S(0)ET(0)APLAPT(-31.94)IPAPAEK 1 0 1 0 P16402 P16402 P16402 HIST1H1D Histone H1.3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.669860839844 3 572.281487 1713.82263 38538.4292435014 1.8751 0.0010731 133480 76.388 133480 76.389 648.669084826222 82.23 0.88543 82.23 81.883 82.768 0 98 30 5 0.807713195746105 0.00615678711369092 0.260474778319338 5.2786E-05 1 19212 57.499 44.923 3 51828000 6209.7 7745.2 5824.4 8016.9 8227 6325.4 9286.1 7207.3 7354 5365 5874.5 7318.2 5918.4 8187.7 8220.1 6436.9 9348.6 7356.9 7338.1 5218.6 1 1 1 1 1 1 1 1 1 1 4228 408 3724 3965 4701 4701 654;4404 SETAPLAPTIPAPAEKTPVK 20 Acetyl (Protein N-term),Phospho (STY) _(ac)SETAPLAPTIPAPAEKT(ph)PVK_ SETAPLAPTIPAPAEKT(1)PVK S(-45.11)ET(-45.11)APLAPT(-37.31)IPAPAEKT(37.31)PVK 1 0 1 1 P16402 P16402 P16402 HIST1H1D Histone H1.3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.145446777344 3 714.036094 2139.08645 33339.1753505661 1.81 0.0012924 213960 152.78 213960 152.78 867.145968040833 78.767 0.96107 78.767 78.318 79.279 -1.4211E-14 156 32 7 0.892067277267977 0.00716703199992797 0.110909362372541 1.4097E-07 1 18395 98.299 90.112 4 369020000 5907.2 16133 7475.9 16501 12961 6748.3 16480 12790 19302 15741 5595.6 15242 7511.4 16763 12881 7304.8 16683 13070 18926 15118 1 1 1 1 1 1 1 1 1 1 4229 408 3725 3966 4702 4702 654;4404;4405 SETPPHWR 8 Phospho (STY) _SET(ph)PPHWR_ SET(1)PPHWR S(-34.03)ET(34.03)PPHWR 0 0 1 0 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 440.209564208984 3 363.821963 1088.44406 46244.1812443804 0.48331 0.00017584 209960 76.387 209960 76.388 440.209450088245 43.162 1.0711 43.162 42.366 43.437 7.1054E-15 78 36 3 0.965560149232811 0.00258932360300423 0.0483558525551166 0.00068442 1 9874 121.93 89.515 2 27102000 10779 14939 11353 13744 13402 12074 12973 14185 14254 1281.8 10202 14105 11423 14158 13474 12206 13261 14185 14010 1535.3 1 1 1 1 1 1 1 1 1 1 4230 952 3726 3967 4703 4703 1587;4533 SETSWESPKQIK 12 Phospho (STY) _SETSWES(ph)PKQIK_ SETSWES(1)PKQIK S(-66.06)ET(-53.11)S(-35.84)WES(35.84)PKQIK 0 0 1 1 Q86UE4 Q86UE4 Q86UE4 MTDH Protein LYRIC MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.728942871094 3 500.564106 1498.67049 36024.971358141 2.3789 0.0011908 457810 229.16 457810 229.16 729.727431693843 60.997 0.58583 60.997 60.716 61.302 0 51 19 4 0.951655593266271 0.00292654286591358 0.0890570015909049 2.08E-07 1 14306 156.5 125.91 4 18226000 22560 14435 22057 12910 22795 23722 20991 19862 14894 7749.8 21346 13628 22245 13522 23058 23262 21286 20306 14955 7757 1 1 1 1 1 1 1 1 1 1 4231 1369 3727 3968 4704 4704 2482 SEVQQPVHPKPLSPDSR 17 Phospho (STY) _SEVQQPVHPKPLS(ph)PDSR_ SEVQQPVHPKPLS(0.991)PDS(0.009)R S(-86.8)EVQQPVHPKPLS(20.38)PDS(-20.38)R 0 0 1 1 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.101623535156 3 660.989478 1979.9466 36057.5392750407 1.9187 0.0012683 231130 152.78 231130 152.78 814.099920320609 44.222 0.54442 44.222 43.965 44.51 0 53 18 4 0.771969768797528 0.00190548327622907 0.0299572322110165 4.9612E-05 1 10149 119.83 92.676 3 24382000 28398 35234 34305 38947 38180 34757 39808 37800 43185 16671 26894 33306 34254 39696 38543 35095 40536 38300 42467 16573 1 1 1 1 1 1 1 1 1 1 4232 2144 3728 3969 4705 4705 3862 SEVQQPVHPKPLSPDSR 17 Phospho (STY) _SEVQQPVHPKPLS(ph)PDSR_ SEVQQPVHPKPLS(0.948)PDS(0.052)R S(-84.15)EVQQPVHPKPLS(12.57)PDS(-12.57)R 0 0 1 1 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.827331542969 4 495.993928 1979.9466 40197.7154836261 1.5071 0.00074751 231010 114.58 231020 114.58 610.825823567529 44.228 0.5153 44.228 43.994 44.51 -7.1054E-15 46 17 3 0.872387032655731 0.00268730681579019 0.0313983660691718 6.7061E-05 1 10156 118.37 85.372 3 31035000 13703 14014 13062 16101 16451 13796 15743 17779 17307 2140.5 12964 13250 13230 16368 16486 13985 16102 17744 17011 2427 1 1 1 1 1 1 1 1 1 1 4233 2144 3728 3969 4706 4706 3862 SEWLDPSQKSPLHVGETR 18 Phospho (STY) _SEWLDPSQKS(ph)PLHVGETR_ SEWLDPSQKS(1)PLHVGETR S(-105.27)EWLDPS(-39.66)QKS(39.66)PLHVGET(-54.88)R 0 0 1 1 O15164 O15164 O15164 TRIM24 Transcription intermediary factor 1-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.087768554688 4 537.254576 2144.9892 38157.3072210058 1.7519 0.0009412 213270 114.58 213270 114.58 652.086796585782 71.15 0.75138 71.15 70.884 71.636 0 99 25 6 0.986645271323783 0.00571242184848456 0.0614870005470684 7.2059E-11 1 16678 188.96 168.54 4 48554000 7361.3 8447.5 7688.4 9258.6 8370.8 6889.8 9670.7 10429 11240 5112.1 6966.9 7984.7 7733.8 9418.9 8474.3 7065.7 9824.5 10478 11024 5055 1 1 1 1 1 1 1 1 1 1 4234 82 3729 3970 4707 4707 144 SFADIGK 7 Phospho (STY) _S(ph)FADIGK_ S(1)FADIGK S(111.65)FADIGK 0 0 1 0 Q6U841;Q9Y6M7 Q6U841 Q6U841 SLC4A10;SLC4A7 Sodium-driven chloride bicarbonate exchanger;Sodium bicarbonate cotransporter 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.342041015625 2 409.178219 816.341885 39602.8192043092 2.6922 0.0011016 560060 229.16 560060 229.16 638.341359064258 69.343 0.69603 69.343 69.003 69.699 0 65 23 4 0.971127872717311 0.0029367820726873 0.0920136018866668 0.0017385 1 16245 111.65 23.516 1 26272000 19588 16232 18629 18041 22939 18411 21934 19767 19794 5557.6 18532 15344 18864 18420 23008 18466 22316 19943 19622 5690.6 1 1 1 1 1 1 1 1 1 1 4235 1278 3730 3971 4708 4708 2276 SFDEVEGVFGR 11 Phospho (STY) _S(ph)FDEVEGVFGR_ S(1)FDEVEGVFGR S(189.24)FDEVEGVFGR 0 0 1 0 Q6Y7W6 Q6Y7W6 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.858947753906 2 661.27665 1320.53875 36326.5252118536 1.8376 0.0012151 173270 114.58 173270 114.58 775.857839081067 88.746 1.0109 88.746 88.366 89.377 -1.4211E-14 63 34 2 0.818333773163494 0.000897229437449119 0.0589803603305486 4.207E-10 1 20679 189.24 132.88 1 7716500 7002 11007 7305.6 11086 16027 6953.9 16240 12559 9737.6 27345 6626.8 10398 7446.1 11312 15746 7276.4 16343 13204 9883.9 26039 1 1 1 1 1 1 1 1 1 1 4236 1288 3731 3972 4709 4709 2299 SFDHLISDTK 10 Phospho (STY) _S(ph)FDHLISDTK_ S(1)FDHLISDTK S(64.93)FDHLIS(-64.93)DT(-104.75)K 0 0 1 0 P21359 P21359 P21359 NF1 Neurofibromin;Neurofibromin truncated MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 567.627258300781 3 414.851588 1241.53293 42514.00653594 1.8456 0.00076566 368260 152.77 368270 152.78 567.626672570969 75.517 0.68633 75.517 75.204 75.891 0 51 23 3 0.943330269463396 0.00273676036667566 0.135717486044486 9.9916E-05 1 17708 125.03 87.921 3 9576700 5214.2 6037.9 5726.6 5441.5 6972.9 5378.9 7643.8 6939.3 6373.6 2923.7 4935.9 5700.4 5753.4 5622.5 7010.8 5419.4 7713.7 6988.2 6342.7 2913.6 1 1 1 1 1 1 1 1 1 1 4237 452 3732 3973 4710 4710 739 SFDKMTK 7 2 Phospho (STY) _S(ph)FDKMT(ph)K_ S(1)FDKMT(1)K S(43.49)FDKMT(43.49)K 0 0 2 1 REV__Q9H329 REV__Q9H329 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.420166015625 2 508.681626 1015.3487 28062.9547226538 2.2243 0.0011315 675750 343.74 675750 343.74 852.424396047987 62.079 0.48529 62.079 61.863 62.348 -7.1054E-15 25 16 2 0.966185178133733 0.00143908945003563 0.0389512706709614 0.056604 1 14570 43.492 20.465 1 24643000 16342 29855 17457 26067 49933 15831 47836 32000 26589 23335 15468 28181 17908 26832 48705 16572 48212 32175 27137 22713 1 1 1 1 1 1 1 1 1 1 + 4238 2348 3733 3974 4711 4711 4305 SFDYNYR 7 Phospho (STY) _S(ph)FDYNYR_ S(1)FDYNYR S(83.06)FDY(-83.06)NY(-106.76)R 0 0 1 0 O75494 O75494 O75494 SRSF10 Serine/arginine-rich splicing factor 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 637.277404785156 2 522.694764 1043.37498 39463.2798925098 1.3693 0.00071572 219210 114.58 219210 114.58 637.276098258632 57.877 1.0149 57.877 57.534 58.549 -7.1054E-15 102 34 4 0.841362260117589 0.00989730485771336 0.431222456162301 3.6645E-05 1 13515 151.48 65.148 3 253310000 78745 77063 81669 75156 63084 91418 87779 87844 83890 6749.6 74524 72788 81887 77545 65460 90875 88059 88455 82939 8388.6 1 1 1 1 1 1 1 1 1 1 4239 189 3735 3975 4712 4712 330 SFEDLTDHPVTR 12 Phospho (STY) _S(ph)FEDLTDHPVTR_ S(1)FEDLTDHPVTR S(41.33)FEDLT(-41.33)DHPVT(-82.99)R 0 0 1 0 P78536 P78536 P78536 ADAM17 Disintegrin and metalloproteinase domain-containing protein 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 575.941528320313 3 499.552089 1495.63444 40822.3860310463 1.6585 0.00082851 152920 76.389 152920 76.39 575.941603476251 61.187 0.84568 61.187 60.776 61.621 0 53 28 2 0.562049928666937 0.00199572780319472 0.0352499934632684 0.00014615 1 14337 102.83 76.234 3 14005000 8357.3 7970.6 9356.5 8011.2 8690 8642.8 8195.5 6896.8 7487.2 2529.8 7911.9 7529.8 9355 8233.4 8850.3 8617.8 8346.7 7061.9 7417.7 2541.7 1 1 1 1 1 1 1 1 1 1 4240 804 3736 3976 4713 4713 1284 SFEEKVENLK 10 Phospho (STY) _S(ph)FEEKVENLK_ S(1)FEEKVENLK S(143.38)FEEKVENLK 0 0 1 1 P55327 P55327 P55327 TPD52 Tumor protein D52 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.369018554688 3 434.870759 1301.59045 38262.8243532748 2.4781 0.0010776 526970 229.16 526970 229.16 664.033295467843 78.827 0.78588 78.827 78.521 79.307 0 81 26 4 0.977930241511284 0.00516906886193957 0.06798207451743 2.0819E-06 1 18484 143.38 105.78 1 51248000 65623 6987.5 68111 6424.8 9693.9 68299 8706.3 32040 6421.7 5380.2 62105 6597.6 67724 7625.4 13270 65253 8847.2 33706 6433.2 5807.6 1 1 1 1 1 1 1 1 1 1 4241 723 3737 3977 4714 4714 1205 SFELPPYTPPPILSPVR 17 2 Phospho (STY) _SFELPPYT(ph)PPPILS(ph)PVR_ S(0.001)FELPPY(0.015)T(0.987)PPPILS(0.996)PVR S(-28.94)FELPPY(-19.33)T(19.33)PPPILS(24.03)PVR 0 0 2 0 Q6PJG2 Q6PJG2 Q6PJG2 ELMSAN1 ELM2 and SANT domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.0498046875 3 690.663142 2068.9676 36135.5441488644 1.014 0.00070033 110600 76.388 110600 76.388 767.049308654013 101.53 0.62484 101.53 101.27 101.9 -1.4211E-14 41 21 4 0.893023144751796 0.00376533786164184 0.135818894922146 0.0017543 1 23881 99.387 85.657 6 20855000 5324.8 5573.9 5362.7 6226.4 7173.8 6461.7 5853.1 6199.2 6553.1 37772 5038.8 5269.2 5417.4 6357 7155.1 6534.2 6040.5 7366.6 6436.2 35710 1 1 1 1 1 1 1 1 1 1 4242 1269 3738 3978 4715 4715 2249;4627 SFEVEEVETPNSTPPR 16 Phospho (STY) _S(ph)FEVEEVETPNSTPPR_ S(1)FEVEEVETPNSTPPR S(96.91)FEVEEVET(-96.91)PNS(-142.12)T(-148.09)PPR 0 0 1 0 Q9UHD8 Q9UHD8 Q9UHD8 SEPT9 Septin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.003662109375 3 633.278694 1896.81425 36980.4650973003 1.7892 0.0011331 120630 76.39 120630 76.391 709.669312269504 67.285 1.4011 67.285 66.604 68.005 0 150 47 4 0.980018064826875 0.00420747773918834 0.0519766531976147 1.5522E-10 3 15749 176.42 150.17 4 19028000 18706 22542 19468 20129 21318 20599 20322 25337 23516 23158 17704 21281 19580 20822 21514 20729 20821 25929 23067 22393 3 3 3 3 3 3 3 3 3 3 4243 2146 3739 3979 4716;4717;4718 4717 3868 SFEVEEVETPNSTPPRR 17 Phospho (STY) _S(ph)FEVEEVETPNSTPPRR_ S(1)FEVEEVETPNSTPPRR S(93.53)FEVEEVET(-93.53)PNS(-107.91)T(-106.48)PPRR 0 0 1 1 Q9UHD8 Q9UHD8 Q9UHD8 SEPT9 Septin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.701110839844 3 685.312398 2052.91536 35816.8193655375 1.6309 0.0011177 111460 76.388 111470 76.389 762.034517421618 59.219 0.80206 59.219 58.876 59.678 0 71 27 4 0.810582731824625 0.00153395713708682 0.0350327304999242 3.8426E-07 1 13853 146.72 123.39 4 10758000 9070.9 14984 10845 13747 9364.2 11586 9389.9 11764 14282 14641 8590 14147 10800 14156 9595.2 11740 9690.9 12235 13885 14059 1 1 1 1 1 1 1 1 1 1 4244 2146 3740 3980 4719 4719 3868 SFFASGR 7 Phospho (STY) _S(ph)FFASGR_ S(0.998)FFAS(0.002)GR S(26.31)FFAS(-26.31)GR 0 0 1 0 Q9Y619;Q9BXI2 Q9Y619 Q9Y619 SLC25A15;SLC25A2 Mitochondrial ornithine transporter 1;Mitochondrial ornithine transporter 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.758483886719 2 426.176011 850.337468 43578.2281646208 1.1676 0.0004976 268860 114.58 268860 114.58 540.757278420476 65.497 0.52114 65.497 65.226 65.748 0 43 17 3 0.916749239250826 0.000999003277156482 0.0570965503228477 0.047458 1 15362 52.482 27.538 2 8678800 4701.6 14550 5128.3 15866 7049.5 4537.1 6275.4 9920.7 15398 2209.3 4450.5 13752 5161.5 16028 7038.1 5125.1 6674.8 9809.2 14806 2309.9 1 1 1 1 1 1 1 1 1 1 4245 1861 3741 3981 4720 4720 3395 SFGHFPGPEFLDVEK 15 Phospho (STY) _S(ph)FGHFPGPEFLDVEK_ S(1)FGHFPGPEFLDVEK S(147.16)FGHFPGPEFLDVEK 0 0 1 0 Q8IWW6 Q8IWW6 Q8IWW6 ARHGAP12 Rho GTPase-activating protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.04443359375 3 595.934311 1784.7811 34767.2799150473 1.8113 0.0010794 256360 152.77 256360 152.78 749.043160420559 99.631 0.22653 99.631 99.466 99.693 1.4211E-14 13 7 3 1 0.000581276431545726 0.0140785993835722 6.2336E-07 1 23181 147.16 110.53 1 20117000 9601.6 12232 10580 11413 6975 11887 6227.4 11052 11977 25121 9089.2 11550 10552 11776 7286 11931 6532.3 11875 11574 23910 1 1 1 1 1 1 1 1 1 1 4246 1418 3742 3982 4721 4721 2584 SFGNRVENDR 10 Phospho (STY) _S(ph)FGNRVENDR_ S(1)FGNRVENDR S(83.29)FGNRVENDR 0 0 1 1 O95104 O95104 O95104 SCAF4 Splicing factor, arginine/serine-rich 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 501.56982421875 3 425.182219 1272.52483 44291.5136118383 0.17243 7.3314E-05 179660 76.388 179660 76.388 501.569960927609 36.855 0.5601 36.855 36.513 37.073 0 45 18 4 0.570990683940449 0.00171295906816589 0.00902638116490181 0.0057095 1 8309 83.292 41.648 1 13232000 13444 16219 15200 18720 18703 14285 20179 17173 18845 4860.4 12728 15336 15250 18997 18792 14562 20433 17260 18651 4974.1 1 1 1 1 1 1 1 1 1 1 4247 232 3743 3983 4722 4722 402 SFGNRVENDRER 12 Phospho (STY) _S(ph)FGNRVENDRER_ S(1)FGNRVENDRER S(143.75)FGNRVENDRER 0 0 1 2 O95104 O95104 O95104 SCAF4 Splicing factor, arginine/serine-rich 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 596.618408203125 3 520.230121 1557.66853 40918.7636806031 1.3131 0.00068312 146830 76.388 146840 76.388 596.617748243605 32.477 0.55769 32.477 32.208 32.765 0 55 18 4 0.944485211078813 0.00565932842133001 0.0404886409686651 5.5879E-07 1 7252 143.75 92.717 1 46080000 9131.6 13723 9644.8 14246 19833 10376 21430 15864 13644 1698 8642.7 12966 9810 14533 19540 10645 21524 15752 13793 1966 1 1 1 1 1 1 1 1 1 1 4248 232 3744 3984 4723 4723 402 SFGRSPSR 8 Phospho (STY) _SFGRS(ph)PSR_ S(0.002)FGRS(0.815)PS(0.183)R S(-26.56)FGRS(6.48)PS(-6.48)R 0 0 1 1 O60293 O60293 O60293 ZFC3H1 Zinc finger C3H1 domain-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 401.534484863281 3 325.146558 972.417844 50979.0773270313 0.13198 4.2912E-05 234930 76.388 234930 76.388 401.534314994111 29.716 0.37785 29.716 29.488 29.866 -3.5527E-15 24 12 3 0.875761596845646 0.000516663059792 0.00659790281614608 0.029989 1 6636 50.284 22.075 3 6128000 17770 21060 19259 22392 16273 16743 16473 20129 23393 3236.7 16820 19902 19271 22819 16700 17083 16948 20157 22789 3513.6 1 1 1 1 1 1 1 1 1 1 4249 140 3745 3985 4724 4724 238 SFKEFIDACLNK 12 Phospho (STY) _S(ph)FKEFIDACLNK_ S(1)FKEFIDACLNK S(42.81)FKEFIDACLNK 0 0 1 1 Q9P289 Q9P289 Q9P289 STK26 Serine/threonine-protein kinase 26 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.068481445313 3 517.901953 1550.68403 35416.9458027259 1.6685 0.00086413 442490 229.17 442490 229.17 747.402436253319 86.371 0.63046 86.371 86.102 86.732 0 71 20 5 0.988927982297987 0.00763481745308825 0.185635820314644 0.041805 1 20133 42.809 22.428 1 47831000 11522 8273.8 12014 8393.1 18069 13282 20567 13244 8675.7 11777 10904 7816.6 12148 8689 18003 13117 20490 13641 9064.7 11396 1 1 1 1 1 1 1 1 1 1 4250 2104 3746 3986 4725 4725 3802 SFLFSSR 7 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)FLFSSR_ S(1)FLFSSR S(60.04)FLFS(-60.04)S(-69.44)R 1 0 1 0 Q9H8S9 Q9H8S9 Q9H8S9 MOB1A MOB kinase activator 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 483.209381103516 2 483.21005 964.405548 45450.7150209325 0.77025 0.00037219 -0.5824 -0.00028142 0.18785 9.077E-05 483.209548722911 98.074 0.52815 98.074 97.817 98.345 1.4211E-14 32 17 2 0.991633697688516 0.00170841225781312 0.125357683108794 0.0086701 1 22767 79.146 70.132 3 4330600 1553.3 636.83 1363.8 1056.7 1493.8 1704.6 1256.3 1433.4 1118.1 1743 1469.2 603.99 1385.3 1069.8 1504.7 1679.6 1286.4 1500.8 1109.1 1674.4 1 1 1 1 1 1 1 1 1 1 4251 1961 3747 3987 4726 4726 3571 SFLSEPSSPGR 11 Phospho (STY) _SFLSEPSS(ph)PGR_ SFLSEPS(0.001)S(0.999)PGR S(-143.4)FLS(-70.32)EPS(-32.01)S(32.01)PGR 0 0 1 0 Q69YN4 Q69YN4 Q69YN4 KIAA1429 Protein virilizer homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 736.853698730469 2 622.271368 1242.52818 36276.7370964003 1.4386 0.00089517 184130 114.58 184140 114.58 736.853246871764 62.52 1.3361 62.52 62.007 63.343 0 149 45 5 0.94095614929881 0.00210645752635981 0.103040702423661 4.0134E-10 1 14621 190.35 153.82 4 314850000 15448 22195 16270 21378 14630 15260 14992 18520 22005 12352 14620 20962 16316 21902 14955 15633 15435 18822 21415 12060 1 1 1 1 1 1 1 1 1 1 4252 1232 3748 3988 4727 4727 2175 SFLVASVLPGPDGNINSPTR 20 Phospho (STY) _SFLVASVLPGPDGNINS(ph)PTR_ SFLVASVLPGPDGNINS(0.821)PT(0.179)R S(-118.97)FLVAS(-96.04)VLPGPDGNINS(6.61)PT(-6.61)R 0 0 1 0 Q7Z3K3 Q7Z3K3 Q7Z3K3 POGZ Pogo transposable element with ZNF domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.406921386719 3 707.684055 2120.03033 34292.083754095 1.5798 0.001118 107940 76.388 107940 76.389 784.406190757237 100.04 0.19426 100.04 99.92 100.11 0 11 6 2 0.687067091802472 0.0117845990428168 0.216022707659832 1.4241E-07 1 23324 143.32 121.65 4 140940000 11835 11345 12087 14125 9385.3 12520 11665 13043 14398 43833 11200 10733 12127 14307 9718.6 12710 11840 14384 14091 41576 1 1 1 1 1 1 1 1 1 1 4253 1332 3749 3989 4728 4728 2400 SFNMPSLDK 9 Phospho (STY) _SFNMPS(ph)LDK_ S(0.005)FNMPS(0.995)LDK S(-23.11)FNMPS(23.11)LDK 0 0 1 0 O15320;Q96RT6 O15320 O15320 CTAGE5;CTAGE1 cTAGE family member 5;cTAGE family member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 526.26708984375 3 373.491114 1117.45151 43519.269845549 1.4728 0.00055006 409050 152.78 409050 152.78 526.266576566492 82.435 0.45338 82.435 82.173 82.626 0 24 15 2 0.800418783392587 0.000819093907597373 0.0255207480322873 0.023814 1 19307 54.343 37.402 2 6404600 4081.5 3134.5 3283.2 3273.3 2612.9 3549.8 2538.4 3468.1 3218.6 3140 3859.1 2961.9 3343.6 3356.9 2690.7 3550.7 2606 3576.5 3147 3036.9 1 1 1 1 1 1 1 1 1 1 4254 88 3750 3990 4729 4729 153 SFPIKPVPSPSWSGSCR 17 Phospho (STY) _SFPIKPVPS(ph)PSWSGSCR_ SFPIKPVPS(0.931)PS(0.067)WS(0.002)GSCR S(-73.92)FPIKPVPS(11.43)PS(-11.43)WS(-26.88)GS(-35.53)CR 0 0 1 1 Q9P0U3 Q9P0U3 Q9P0U3 SENP1 Sentrin-specific protease 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 810.082580566406 3 656.972771 1967.89648 34782.5353773999 1.4411 0.00094679 232550 152.78 232550 152.78 810.082497044404 79.945 1.0232 79.945 79.644 80.668 -1.4211E-14 120 34 6 0.974778498543143 0.00475085906153082 0.0440180005630417 6.5879E-05 1 18700 113.59 94.21 5 47665000 17567 25962 19222 22809 8211 19458 9322 19556 25313 10255 16629 24508 19128 23559 9013.6 19674 9873.5 19921 24298 10109 1 1 1 1 1 1 1 1 1 1 4255 2093 3751 3991 4730 4730 3782 SFPSSPSK 8 Phospho (STY) _SFPSS(ph)PSK_ S(0.003)FPS(0.145)S(0.617)PS(0.235)K S(-23.22)FPS(-6.29)S(4.19)PS(-4.19)K 0 0 1 0 Q96KQ7 Q96KQ7 Q96KQ7 EHMT2 Histone-lysine N-methyltransferase EHMT2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.859375 2 458.694233 915.373913 37559.9362030478 2.1772 0.00099866 499600 229.16 499600 229.16 687.856869165463 50.996 0.98617 50.996 50.589 51.575 0 76 31 3 0.759924468316441 0.00105072586721951 0.0121550205349818 0.0088903 1 11847 88.056 40.859 4 12698000 39113 32197 39939 33098 21501 36888 22084 30348 33669 9515.8 37014 30420 39944 33990 22927 36741 22769 30981 32730 9662.6 1 1 1 1 1 1 1 1 1 1 4256 1709 3752 3992 4731 4731 3150 SFQDYTGQK 9 Phospho (STY) _S(ph)FQDYTGQK_ S(1)FQDYTGQK S(55.93)FQDY(-55.93)T(-58.91)GQK 0 0 1 0 Q9NP64 Q9NP64 Q9NP64 ZCCHC17 Nucleolar protein of 40 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.930603027344 3 385.1569 1152.44887 41725.8343908898 1.1102 0.00042758 396650 152.77 396660 152.77 537.931264512779 59.157 0.46392 59.157 58.932 59.396 0 32 15 3 0.924714281472377 0.00144491122819178 0.0337933543994486 0.00021661 1 13859 119.21 83.799 3 8405400 7463.8 11458 9177.5 10015 14868 9051.8 15607 11502 12475 1377.4 7069.1 10816 9213.7 10356 14759 9149.4 15765 11484 12442 1563.2 1 1 1 1 1 1 1 1 1 1 4257 1994 3753 3993 4732 4732 3619 SFSADNFIGIQR 12 Phospho (STY) _SFS(ph)ADNFIGIQR_ S(0.015)FS(0.985)ADNFIGIQR S(-18.04)FS(18.04)ADNFIGIQR 0 0 1 0 Q8N7R7 Q8N7R7 Q8N7R7 CCNYL1 Cyclin-Y-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 832.405944824219 2 717.824299 1433.63404 34350.9133332198 1.3908 0.00099832 159620 114.58 159620 114.58 832.405623939781 86.316 0.65829 86.316 86.131 86.789 0 59 22 3 0.958005516778371 0.001656130473357 0.0547668410355447 1.2247E-10 1 20146 179.08 148.08 2 15945000 23524 15853 24630 14438 13254 23786 13899 16313 15726 22513 22264 14967 24599 15061 14132 23373 14167 17331 15439 21576 1 1 1 1 1 1 1 1 1 1 4258 1484 3754 3994 4733 4733 2733 SFSASQSTDR 10 Phospho (STY) _SFS(ph)ASQSTDR_ S(0.024)FS(0.972)AS(0.004)QSTDR S(-16.01)FS(16.01)AS(-23.91)QS(-76.89)T(-91.21)DR 0 0 1 0 Q9ULJ3 Q9ULJ3 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.810791015625 2 583.2297 1164.44485 37603.3633169842 1.2153 0.00070881 196460 114.58 196460 114.58 697.811367874568 36.737 0.38633 36.737 36.569 36.955 0 30 12 3 0.8347598717865 0.00110076481642801 0.0187368897944392 1.8182E-09 1 8274 182.25 138.74 5 19269000 30152 26801 27443 27326 20222 28569 21941 27679 26559 9742.8 28521 25321 27704 28046 20977 28588 22378 28092 26010 9814.6 1 1 1 1 1 1 1 1 1 1 4259 2185 3755 3995 4734 4734 3953 SFSFEKPR 8 Phospho (STY) _SFS(ph)FEKPR_ S(0.053)FS(0.947)FEKPR S(-12.51)FS(12.51)FEKPR 0 0 1 1 P78314 P78314 P78314 SH3BP2 SH3 domain-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 512.606506347656 3 359.830347 1076.46921 44230.5573716982 0.43784 0.00015755 424580 152.78 424580 152.78 512.605700178321 65.71 0.58921 65.71 65.399 65.988 0 44 19 3 0.96539201293691 0.00231168643140849 0.0446307502258407 0.0059255 1 15423 86.014 53.516 2 9268000 12227 4857.3 12170 4334.4 9396.3 12791 9650.7 8233.6 4598.4 1347 11570 4585.5 12224 4618.2 9698 12389 9673 8476.1 4751.5 1459 1 1 1 1 1 1 1 1 1 1 4260 793 3756 3996 4735 4735 1266 SFSGLIK 7 Phospho (STY) _S(ph)FSGLIK_ S(0.999)FS(0.001)GLIK S(29.45)FS(-29.45)GLIK 0 0 1 0 Q14CB8 Q14CB8 Q14CB8 ARHGAP19 Rho GTPase-activating protein 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.368530273438 2 416.204237 830.393921 39361.708948496 2.2441 0.00093401 550600 229.16 550600 229.16 645.367116173315 83.417 0.64112 83.417 83.143 83.784 0 58 21 4 0.824277882470761 0.00283654481228808 0.0629235997426947 0.018214 1 19485 74.173 7.605 2 22954000 24645 14456 26032 15284 9242.6 28820 9972 17695 15745 12694 23325 13661 25928 15860 10386 28168 10274 18563 15291 12362 1 1 1 1 1 1 1 1 1 1 4261 1039 3757 3997 4736 4736 1799 SFSISPVR 8 Phospho (STY) _S(ph)FSISPVR_ S(0.991)FS(0.009)ISPVR S(20.35)FS(-20.35)IS(-38.22)PVR 0 0 1 0 P18583 P18583 P18583 SON Protein SON MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 601.313110351563 2 486.73115 971.447747 41388.4966718845 1.308 0.00063663 235410 114.58 235410 114.58 601.312749903342 70.251 0.4001 70.251 70.017 70.417 0 21 13 2 0.544082907522564 0.000359359145848648 0.00399863661623592 0.017388 1 16496 72.607 60.56 3 6435600 13066 14151 13593 14878 14085 13178 14068 14482 16291 10056 12365 13372 13663 15205 14266 13320 14382 14779 15980 9803.7 1 1 1 1 1 1 1 1 1 1 4262 428 3758 3998 4737 4737 693 SFSKEVEER 9 Phospho (STY) _S(ph)FSKEVEER_ S(0.996)FS(0.004)KEVEER S(23.88)FS(-23.88)KEVEER 0 0 1 1 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.922180175781 2 595.758093 1189.50163 34628.9701990351 2.8222 0.0016813 384660 229.16 384660 229.16 824.920830213361 49.311 0.83795 49.311 48.997 49.835 0 100 28 5 0.996881829411159 0.00340405338573897 0.126428982577029 0.00049201 1 11406 109.16 76.118 2 268900000 33621 41124 31168 39745 21702 30799 21075 31557 44795 7845.9 31805 38841 31408 40749 22596 31294 22133 31861 43193 8118.1 1 1 1 1 1 1 1 1 1 1 4263 861 3759 3999 4738 4738 1395;1396 SFSKEVEER 9 Phospho (STY) _SFS(ph)KEVEER_ S(0.406)FS(0.594)KEVEER S(-1.65)FS(1.65)KEVEER 0 0 1 1 Q04637 Q04637 Q04637 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 550.283386230469 3 397.507821 1189.50163 42090.2732341991 1.1075 0.00044023 384330 152.78 384330 152.78 550.282783400177 50.267 1.0969 50.267 49.895 50.992 0 111 37 5 0.880331278181624 0.00943649763143052 0.066767289206615 0.0035457 1 11656 90.689 42.029 2 227460000 52309 56933 58991 52541 67086 53201 78128 66456 57514 2702 49523 53758 59137 54226 67738 53468 78433 66228 57623 4082.3 1 1 1 1 1 1 1 1 1 1 4264 861 3759 3999 4739 4739 1395;1396 SFSMQDLR 8 Phospho (STY) _SFS(ph)MQDLR_ S(0.002)FS(0.998)MQDLR S(-26.12)FS(26.12)MQDLR 0 0 1 0 Q9H6H4 Q9H6H4 Q9H6H4 REEP4 Receptor expression-enhancing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.799865722656 2 532.217549 1062.42055 38279.1656390751 1.7388 0.00092543 215290 114.58 215290 114.58 646.799047407797 71.332 0.83595 71.332 71.002 71.838 0 97 28 5 0.907849166851066 0.00160939396724302 0.0479504176581672 0.0010014 1 16697 115.29 66.685 2 62744000 19217 12895 19838 12051 9091.5 21078 10214 14995 15979 10617 18187 12176 19811 12570 9881.9 20668 10501 15596 15522 10344 1 1 1 1 1 1 1 1 1 1 4265 1945 3760 4000 4740 4740 3535 SFSPLQPGQAPTGR 14 Phospho (STY) _SFS(ph)PLQPGQAPTGR_ S(0.189)FS(0.811)PLQPGQAPTGR S(-6.34)FS(6.34)PLQPGQAPT(-60.03)GR 0 0 1 0 Q7Z3C6 Q7Z3C6 Q7Z3C6 ATG9A Autophagy-related protein 9A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 584.626403808594 3 508.239846 1521.69771 41006.9037393634 1.6441 0.00083561 150300 76.388 150300 76.389 584.627364234986 62.887 0.43658 62.887 62.644 63.081 -7.1054E-15 21 14 2 0.673397880192367 0.0009740795209517 0.0098912675289732 0.013391 1 14777 64.275 37.563 3 7416900 7043.9 8100.4 7935 7321.6 6532.1 7330.5 7488.6 8065.2 7798.7 2188.4 6668.7 7647.8 7923.5 7565.3 6725.4 7360.7 7585.3 8127.4 7681.8 2247.3 1 1 1 1 1 1 1 1 1 1 4266 1331 3761 4001 4741 4741 2398 SFSPTMK 7 Oxidation (M),Phospho (STY) _SFS(ph)PTM(ox)K_ SFSPTM(1)K S(0.004)FS(0.707)PT(0.289)MK SFSPTM(43.98)K S(-22.44)FS(3.88)PT(-3.88)MK 0 1 1 0 A3KN83 A3KN83 A3KN83 SBNO1 Protein strawberry notch homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.341003417969 2 447.177362 892.34017 37268.8970948 1.8666 0.00083468 512470 229.16 512470 229.16 676.340965516056 51.513 0.87068 51.513 51.021 51.892 0 70 29 3 0.976796466400501 0.00150179388333286 0.0108861557436864 0.056087 1 11998 43.982 22.828 3 30422000 33450 32379 30333 30646 22100 32327 20873 28050 33425 8849 31641 30577 30620 31599 22908 32291 21650 28569 32449 8981.6 1 1 1 1 1 1 1 1 1 1 4267 6 3762 4002 4742 4742 0 16 SFSPTMK 7 Phospho (STY) _SFS(ph)PTMK_ S(0.008)FS(0.985)PT(0.006)MK S(-20.73)FS(20.73)PT(-22.03)MK 0 0 1 0 A3KN83 A3KN83 A3KN83 SBNO1 Protein strawberry notch homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.344055175781 2 439.179904 876.345256 38049.9496435777 1.7758 0.0007799 521800 229.16 521800 229.16 668.343219673162 62.475 0.75475 62.475 62.007 62.761 0 76 25 4 0.897867767518481 0.00973455843838128 0.651510126928086 0.00085597 1 14647 125.83 92.989 3 146810000 67733 73161 63342 68827 36852 60203 40371 55573 69574 7223.2 64077 69088 63717 70795 39039 60685 41724 56141 67410 8087.6 1 1 1 1 1 1 1 1 1 1 4268 6 3762 4003 4743 4743 16 SFSQPGLR 8 Phospho (STY) _SFS(ph)QPGLR_ S(0.055)FS(0.945)QPGLR S(-12.36)FS(12.36)QPGLR 0 0 1 0 Q86TI0 Q86TI0 Q86TI0 TBC1D1 TBC1 domain family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 600.80322265625 2 486.220949 970.427346 40409.8674376352 0.82433 0.0004008 235660 114.58 235660 114.58 600.802263473801 54.341 0.49278 54.341 54.089 54.582 0 47 16 4 0.93582245102513 0.00177556839603626 0.0223718187321348 0.027673 1 12675 61.344 23.647 2 34146000 40707 10344 40225 11023 13419 41723 16098 24536 12130 3173.3 38517 9775.6 40208 11770 15234 40241 16149 25373 12137 3555.9 1 1 1 1 1 1 1 1 1 1 4269 1362 3763 4004 4744 4744 2472 SFSSPENFQR 10 Phospho (STY) _SFS(ph)SPENFQR_ SFS(0.5)S(0.5)PENFQR S(-36.61)FS(0)S(0)PENFQR 0 0 1 0 Q9Y580 Q9Y580 Q9Y580 RBM7 RNA-binding protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 754.340698242188 2 639.761167 1277.50778 35311.0605093438 1.5641 0.0010006 179100 114.58 179100 114.58 754.342527047839 58.185 0.61736 58.185 57.875 58.492 0 73 20 5 0.890195112950345 0.00154373646953258 0.0177352028280553 2.5149E-11 1 13575 212.93 169.43 3 145550000 22334 16669 22531 18306 30064 21292 31400 22668 16244 9820 21134 15756 22771 18744 30069 21245 31483 22980 16671 9771.3 1 1 1 1 1 1 1 1 1 1 4270 2290 3764 4005 4745 4745 4231;4232 SFSSQRPGMER 11 Phospho (STY) _S(ph)FSSQRPGMER_ S(0.649)FS(0.346)S(0.005)QRPGMER S(2.73)FS(-2.73)S(-20.82)QRPGMER 0 0 1 1 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.86865234375 2 681.287026 1360.5595 32244.6302294729 2.1607 0.001472 168180 114.58 168180 114.58 795.867551635249 38.653 0.35054 38.653 38.524 38.875 0 19 11 2 0.943802432487896 0.000633077518720646 0.0136054825031844 0.024111 1 8765 61.042 30.17 3 9906200 13638 14815 12441 16824 10824 13223 10754 11183 14819 7195.4 12901 14007 12576 17093 11083 13402 11062 11513 14450 7034.2 1 1 1 1 1 1 1 1 1 1 4271 624 3765 4006 4746 4746 1032 SFSSQRPVDR 10 Phospho (STY) _S(ph)FSSQRPVDR_ S(0.958)FS(0.038)S(0.003)QRPVDR S(14)FS(-14)S(-24.49)QRPVDR 0 0 1 1 Q9Y520 Q9Y520 Q9Y520 PRRC2C Protein PRRC2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 496.577911376953 3 420.190715 1257.55031 46264.0448624774 0.26381 0.00011085 181790 76.388 181790 76.388 496.578131573442 35.062 0.52278 35.062 34.746 35.269 0 48 17 4 0.697968384238705 0.00182356508353677 0.00988146983980612 0.0023953 1 7882 94.287 66.318 3 23528000 22850 16541 24921 17714 15171 24593 15175 21240 17522 3101.9 21629 15633 24856 18227 15974 24308 15511 21529 17190 3412.4 1 1 1 1 1 1 1 1 1 1 4272 2289 3766 4007 4747 4747 4230 SFSTALYGESDL 12 Unmodified _SFSTALYGESDL_ 0 0 0 0 O43707 O43707 O43707 ACTN4 Alpha-actinin-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.881774902344 2 645.298433 1288.58231 36774.491593124 2.0986 0.0013542 177560 114.58 177570 114.58 759.879551264362 89.965 0.49933 89.965 89.662 90.161 0 25 16 2 0.655167888831571 0.00119334970844617 0.0510050005635659 1.2557E-06 1 20962 154.28 138.39 1 6324100 6297.5 5514.3 5587.9 5040 5170.3 4726.3 5952.6 6493.8 6386.7 29636 5956.4 5206.4 5663.9 5198.8 5283 4829.4 6033.6 7338.3 6283.4 28056 1 1 1 1 1 1 1 1 1 1 4273 122 3767 4008 4748 4748 SFSTGSDLGHWVTTPPDIPGSR 22 Phospho (STY) _SFS(ph)TGSDLGHWVTTPPDIPGSR_ S(0.144)FS(0.681)T(0.144)GS(0.031)DLGHWVTTPPDIPGSR S(-6.75)FS(6.75)T(-6.75)GS(-13.4)DLGHWVT(-72.1)T(-95.84)PPDIPGS(-133.84)R 0 0 1 0 Q96AG3 Q96AG3 Q96AG3 SLC25A46 Solute carrier family 25 member 46 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.420043945313 3 798.696911 2393.0689 32437.5966099011 1.6854 0.0013461 95641 76.388 95643 76.39 875.417686123089 90.692 0.63258 90.692 90.364 90.996 1.4211E-14 66 21 4 0.982197773183499 0.00408862969760892 0.111896593808225 4.0763E-08 1 21148 156.78 121.03 7 16514000 5510.1 7190.9 5652.3 7586.3 5716.3 6411.9 5943.7 7140.9 7665.5 18989 5214.5 6795.3 5684.6 7746.4 5801.9 6524.3 6086.4 7706.7 7490.5 18046 1 1 1 1 1 1 1 1 1 1 4274 1647 3768 4009 4749 4749 3041 SFSVPKK 7 Phospho (STY) _SFS(ph)VPKK_ S(0.127)FS(0.873)VPKK S(-8.37)FS(8.37)VPKK 0 0 1 1 Q5TBA9 Q5TBA9 Q5TBA9 FRY Protein furry homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 520.6435546875 3 291.480766 871.42047 43990.3853961504 1.0349 0.00030164 786200 229.16 786200 229.16 520.643573519905 61.582 0.7026 61.582 61.247 61.949 -7.1054E-15 57 23 3 0.870995937141183 0.00157061586354768 0.0336898027548377 0.044324 1 14420 44.318 17.803 2 14716000 23994 3072.3 27182 3298.8 7957.8 25055 8265.3 12948 3036.2 1576.3 22716 2903.6 26952 3722.8 9210 23994 8255.4 13505 3217.6 1783.9 1 1 1 1 1 1 1 1 1 1 4275 1191 3769 4010 4750 4750 2083 SFTSLYK 7 Phospho (STY) _S(ph)FTSLYK_ S(0.894)FT(0.095)S(0.011)LYK S(9.74)FT(-9.74)S(-18.97)LY(-49.7)K 0 0 1 0 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.371520996094 2 463.206976 924.3994 37920.0624160885 2.2402 0.0010377 494730 229.16 494730 229.16 692.369985644475 78.509 0.48759 78.509 78.261 78.749 0 42 16 3 0.942136806711749 0.00254718303929785 0.0943583432446701 0.0071485 1 18388 93.166 56.072 4 19350000 16992 20213 16330 20079 23851 18352 28390 22219 21660 16738 16076 19094 16582 20597 23817 18552 28496 22642 21658 16275 1 1 1 1 1 1 1 1 1 1 4276 1180 3770 4011 4751 4751 2046 SGAGSSPETK 10 Phospho (STY) _SGAGSS(ph)PETK_ SGAGS(0.075)S(0.925)PETK S(-89.08)GAGS(-10.91)S(10.91)PET(-44.75)K 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.866760253906 2 500.702786 999.39102 35930.2358044351 2.3192 0.0011612 457680 229.16 457680 229.16 729.86589720993 29.706 0.61585 29.706 29.458 30.074 0 77 20 6 0.990685118505159 0.00912254770045548 0.147312991204175 1.5835E-14 1 6598 236.7 171.79 4 267930000 76355 75389 74603 75084 38328 72734 43499 65956 78039 2197.2 72245 71216 74787 77075 41143 72929 44976 66488 75536 3595.4 1 1 1 1 1 1 1 1 1 1 4277 2226 3771 4012 4752 4752 4078 SGAMSPMSWNSDASTSEAS 19 Phospho (STY) _SGAMS(ph)PMSWNSDASTSEAS_ S(0.015)GAMS(0.818)PMS(0.167)WNSDASTSEAS S(-17.28)GAMS(6.9)PMS(-6.9)WNS(-87.34)DAS(-138.64)T(-147.27)S(-150.92)EAS(-153.23) 0 0 1 0 Q13158 Q13158 Q13158 FADD FAS-associated death domain protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1106.94519042969 2 991.86082 1981.70709 30854.9470087783 1.8957 0.0018803 115520 114.58 115520 114.58 1106.94360922764 74.258 0.4957 74.258 73.983 74.479 0 52 16 4 0.580897339322145 0.000964351834337809 0.0539830279375539 6.6457E-11 1 17422 191.49 166.7 8 18557000 4758.8 4053.1 4465.8 3762.9 3839.7 4100 4336.2 5008.9 4258.3 43502 4501.9 3827.2 4507 3886.8 3940.5 4187.9 4387.9 6299.8 4205 41078 1 1 1 1 1 1 1 1 1 1 4278 932 3772 4013 4753 4753 1532 SGAQASSTPLSPTR 14 Phospho (STY) _SGAQASSTPLS(ph)PTR_ SGAQASSTPLS(1)PTR S(-93.47)GAQAS(-84.86)S(-73.79)T(-50.15)PLS(35.1)PT(-35.1)R 0 0 1 0 P02545 P02545 P02545 LMNA Prelamin-A/C;Lamin-A/C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 834.910217285156 2 720.329945 1438.64534 34352.5574397086 1.305 0.00094006 159070 114.58 159070 114.58 834.910987022392 37.522 0.44472 37.522 37.325 37.769 0 43 17 3 1 0.00020884918513041 0.000778541387160874 1.4909E-15 1 8453 218.83 181.27 6 119530000 10232 55997 10301 51437 8782.8 8884.1 10366 23227 54880 5751.6 9682.7 52873 10353 52408 9066.9 10995 11694 22916 52262 5953.4 1 1 1 1 1 1 1 1 1 1 4279 285 3773 4014 4754 4754 475 SGASSSEQNNNSYETK 16 Phospho (STY) _SGASSSEQNNNS(ph)YETK_ SGAS(0.001)S(0.005)S(0.047)EQNNNS(0.473)Y(0.001)ET(0.473)K S(-40.27)GAS(-26.18)S(-20.21)S(-10.06)EQNNNS(0)Y(-27.88)ET(0)K 0 0 1 0 O60825 O60825 O60825 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.674926757813 3 594.898653 1781.67413 36307.5581839313 2.3333 0.0013881 256810 152.77 256810 152.78 747.672889444775 28.309 0.60321 28.309 28.092 28.695 0 50 20 4 0.968346160587127 0.00469357990842134 0.0657538595545193 0.044153 1 6300 44.238 28.717 7 23624000 14866 23262 13782 19152 10098 14440 12551 15984 22361 3144.9 14063 21952 13899 19840 10509 14709 12927 16068 21648 3331.2 1 1 1 1 1 1 1 1 1 1 4280 157 3774 4015 4755 4755 268;4334 SGCSEAQPPESPETR 15 Phospho (STY) _SGCSEAQPPES(ph)PETR_ SGCSEAQPPES(0.876)PET(0.124)R S(-52.8)GCS(-43.61)EAQPPES(8.51)PET(-8.51)R 0 0 1 0 Q9Y6A5 Q9Y6A5 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.614929199219 3 571.225824 1710.65564 40587.1750605256 1.8707 0.0010686 133730 76.388 133730 76.389 647.613413086716 29.892 0.58475 29.892 29.548 30.133 0 52 19 4 0.730888314111797 0.00155990367362476 0.0236905249841187 0.013203 1 6655 65.277 59.848 4 9334800 8979.5 7902.6 8641.7 9527.9 9210.7 8739.5 10562 9408.9 11570 3051.6 8495.6 7474.6 8730.6 9671.1 9333.5 8809.3 10714 9503.8 11373 3091.2 1 1 1 1 1 1 1 1 1 1 4281 2310 3775 4016 4756 4756 4261 SGDEMIFDPTMSK 13 Acetyl (Protein N-term),2 Oxidation (M),Phospho (STY) _(ac)S(ph)GDEM(ox)IFDPTM(ox)SK_ SGDEM(1)IFDPTM(1)SK S(1)GDEMIFDPTMSK SGDEM(76.14)IFDPTM(76.14)SK S(51.42)GDEMIFDPT(-51.42)MS(-63.31)K 1 2 1 0 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 920.884765625 2 806.301347 1610.58814 32383.6391950468 2.1694 0.0017492 142110 114.58 142110 114.58 920.88275772233 73.915 2.0993 73.915 73.473 75.572 0 263 72 6 0.749494650078308 0.00291096611828452 0.0905450339225558 8.5328E-07 2 17486 87.298 71.095 3 232070000 19408 24101 20156 22555 27574 18699 25852 25204 25397 89622 18368 22759 20340 23191 27519 19165 26385 27730 25078 84973 2 2 2 2 2 2 2 2 2 2 4282 443 3776 4017 4757;4758 4758 58;59 720 SGDEMIFDPTMSK 13 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)S(ph)GDEM(ox)IFDPTMSK_ SGDEM(1)IFDPTMSK S(1)GDEMIFDPTMSK SGDEM(67.61)IFDPTM(-67.61)SK S(60.85)GDEMIFDPT(-60.85)MS(-69.52)K 1 1 1 0 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.886779785156 2 798.30389 1594.59323 32665.7679560951 1.4671 0.0011712 143530 114.58 143530 114.58 912.885809485839 84.124 2.0887 84.124 83.615 85.703 0 306 72 6 0.902169198773179 0.00918347059633876 0.662893176947471 3.5773E-07 3 19774 87.298 62.955 6 374530000 34420 53503 35816 52119 43914 35789 46131 51020 57357 90026 32575 50534 36087 53336 44127 36963 47158 53299 56118 85951 3 3 3 3 3 3 3 3 3 3 4283 443 3776 4018 4759;4760;4761 4760 58;59 720 SGDEMIFDPTMSK 13 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)S(ph)GDEMIFDPTM(ox)SK_ SGDEMIFDPTM(1)SK S(1)GDEMIFDPTMSK SGDEM(-58.45)IFDPTM(58.45)SK S(68.96)GDEMIFDPT(-68.96)MS(-80.93)K 1 1 1 0 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.886474609375 2 798.30389 1594.59323 32572.7763671435 1.4639 0.0011686 143530 114.58 143530 114.58 912.885570600431 86.641 3.0905 86.641 85.703 88.794 1.4211E-14 354 106 6 0.973904788072382 0.010787942532997 0.21759148293728 2.8051E-07 1 20305 98.943 89.355 6 247380000 15101 23708 12881 24913 20268 14188 19751 19039 25372 26015 14281 22403 13187 25334 20130 14810 20284 19694 24796 24936 1 1 1 1 1 1 1 1 1 1 4284 443 3776 4018 4762 4762 58;59 720 SGDEMIFDPTMSK 13 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)GDEMIFDPTMSK_ S(1)GDEMIFDPTMSK S(73.46)GDEMIFDPT(-73.46)MS(-86.5)K 1 0 1 0 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 904.889587402344 2 790.306432 1578.59831 33009.8876054797 1.9172 0.0015152 144980 114.58 144990 114.58 904.888486947816 96.682 1.9919 96.682 96.145 98.137 0 312 68 7 0.867560658292964 0.0161081659463974 0.400021413408081 4.6958E-08 2 22577 117.67 106.18 3 461690000 38400 66927 37914 65514 53946 38829 56869 62280 68488 110700 36335 63216 38407 66925 53850 40614 58066 64898 67085 105680 2 2 2 2 2 2 2 2 2 2 4285 443 3776 4019 4763;4764 4764 720 SGDEMIFDPTMSKK 14 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)S(ph)GDEM(ox)IFDPTMSKK_ SGDEM(1)IFDPTMSKK S(1)GDEMIFDPTMSKK SGDEM(60.66)IFDPTM(-60.66)SKK S(69.08)GDEMIFDPT(-69.08)MS(-72.38)KK 1 1 1 1 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.013793945313 3 575.236673 1722.68819 35934.7915022672 2.1259 0.0012229 265590 152.77 265590 152.78 728.010790400501 77.807 0.43385 77.807 77.545 77.979 -1.4211E-14 45 14 4 0.905342563389991 0.00210621813163904 0.0201915046811226 1.0139E-06 1 18225 92.935 83.613 6 16252000 7620.9 10677 6841.6 10901 12112 7517.4 11261 9646.9 11360 8300.8 7208.4 10087 6996.9 11125 11968 7728.4 11506 9844.1 11204 8039.5 1 1 1 1 1 1 1 1 1 1 4286 443 3777 4020 4765 4765 58;59 720 SGDEMIFDPTMSKK 14 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)S(ph)GDEMIFDPTM(ox)SKK_ SGDEM(0.001)IFDPTM(0.999)SKK S(1)GDEMIFDPTMSKK SGDEM(-31.62)IFDPTM(31.62)SKK S(54.25)GDEMIFDPT(-54.25)MS(-58.08)KK 1 1 1 1 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.015380859375 3 575.236673 1722.68819 37303.8429266329 1.7238 0.00099161 265590 152.78 265590 152.78 728.012618795935 80.211 0.61866 80.211 79.872 80.491 0 47 20 3 0.865530801765155 0.00199799895792207 0.0149167940676222 0.00013948 1 18767 63.894 55.244 6 15119000 6805.2 8337 7481.5 8065.8 8005.9 6724.8 8791.5 8540.1 9710.6 8871.5 6442 7874.1 7502.5 8276.8 8105.4 6840 8936.5 8763.3 9542.5 8551.2 1 1 1 1 1 1 1 1 1 1 4287 443 3777 4020 4766 4766 58;59 720 SGDEMIFDPTMSKK 14 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)GDEMIFDPTMSKK_ S(1)GDEMIFDPTMSKK S(86.51)GDEMIFDPT(-86.51)MS(-100.26)KK 1 0 1 1 P20042 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1083.515625 2 854.353914 1706.69327 29870.3871301644 1.3106 0.0011197 268230 229.16 268230 229.16 1083.51478714581 88.206 0.50951 88.206 87.998 88.507 0 43 17 3 0.985773629900093 0.000923225939089651 0.0245065309287959 4.4192E-11 1 20570 124.1 108.56 3 11724000 5408.4 10718 7167.1 8133.6 10140 7610.8 10491 9806.6 10320 25612 5124.3 10111 7152.8 8500.7 10120 7727.8 10657 10523 10190 24344 1 1 1 1 1 1 1 1 1 1 4288 443 3777 4021 4767 4767 720 SGDETPGSEVPGDK 14 Phospho (STY) _SGDET(ph)PGSEVPGDK_ S(0.207)GDET(0.785)PGS(0.008)EVPGDK S(-5.8)GDET(5.8)PGS(-19.95)EVPGDK 0 0 1 0 Q1KMD3 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.304626464844 3 485.527609 1453.561 38942.2392945863 2.136 0.0010371 314660 152.78 314660 152.78 638.302680799639 44.677 0.66365 44.677 44.344 45.007 0 59 22 4 0.515519786962151 0.000526454789618912 0.00540214772106935 0.0048501 1 10285 93.226 75.9 3 9704700 10680 14339 13242 14742 11601 12867 11290 14025 16467 4660.2 10116 13548 13166 15082 11870 13004 11649 14164 16029 4712.7 1 1 1 1 1 1 1 1 1 1 4289 1118 3778 4022 4768 4768 1943;4586 SGDETPGSEVPGDK 14 Phospho (STY) _S(ph)GDETPGSEVPGDK_ S(0.683)GDET(0.317)PGSEVPGDK S(3.33)GDET(-3.33)PGS(-38.63)EVPGDK 0 0 1 0 Q1KMD3 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.304565429688 3 485.527609 1453.561 39734.0288022666 2.4755 0.0012019 314660 152.78 314660 152.78 638.303345412448 46.077 0.75459 46.077 45.819 46.574 0 89 25 4 0.765390054093964 0.00192913958235683 0.0496766651513062 0.0017033 1 10594 97.095 81.205 3 40861000 22460 19504 21394 19709 20065 22551 22660 20240 21144 5872.4 21248 18426 21593 20269 20475 22459 22900 20569 20927 5998 1 1 1 1 1 1 1 1 1 1 4290 1118 3778 4022 4769 4769 1943;4586 SGDETPGSEVPGDK 14 Unmodified _SGDETPGSEVPGDK_ 0 0 0 0 Q1KMD3 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 916.965148925781 2 687.80461 1373.59467 NaN NaN NaN NaN NaN NaN NaN NaN 41.926 1 41.926 41.426 42.426 0 NaN NaN NaN 0.047202 1 9574 52.247 12.538 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4291 1118 3778 4023 4770 4770 SGEDEQQEQTIAEDLVVTK 19 Acetyl (Protein N-term) _(ac)SGEDEQQEQTIAEDLVVTK_ 1 0 0 0 Q9UQ80 Q9UQ80 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.733032226563 3 721.00961 2160.007 35152.0713027974 1.7827 0.0012853 105950 76.388 105950 76.389 797.73179427323 88.5 0.8875 88.5 88.139 89.026 1.4211E-14 132 30 7 0.941284232590424 0.0128242450142281 0.229044163152315 6.7511E-09 1 20601 47.088 28.724 1 275130000 16362 19851 18116 20772 11531 17468 14008 19006 21255 16733 15489 18758 18065 21219 12132 17707 14339 19509 20665 16196 1 1 1 1 1 1 1 1 1 1 4292 2227 3779 4024 4771 4771 SGEDEQQEQTIAEDLVVTK 19 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)GEDEQQEQTIAEDLVVTK_ S(1)GEDEQQEQTIAEDLVVTK S(72.57)GEDEQQEQT(-72.57)IAEDLVVT(-118.47)K 1 0 1 0 Q9UQ80 Q9UQ80 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1236.07958984375 2 1120.99394 2239.97333 28448.3096701357 1.3713 0.0015372 102210 114.58 102220 114.58 1236.07871127647 94.933 2.4929 94.933 94.429 96.922 0 271 86 6 0.719407523352138 0.00130063284378186 0.0305504639352962 1.7094E-16 1 22191 132.47 114.61 3 91089000 5732.7 12455 7320 11922 8675.4 4768.9 8359.2 10162 11732 57741 5430.5 11762 7295.5 12159 8722.5 5275.8 8616.5 11725 11433 54605 1 1 1 1 1 1 1 1 1 1 4293 2227 3779 4025 4772 4772 4118 SGEDEQQEQTIAEDLVVTK 19 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)GEDEQQEQTIAEDLVVTK_ S(0.999)GEDEQQEQT(0.001)IAEDLVVTK S(31.74)GEDEQQEQT(-31.74)IAEDLVVT(-72.45)K 1 0 1 0 Q9UQ80 Q9UQ80 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1235.75598144531 2 1120.99394 2239.97333 NaN NaN NaN NaN NaN NaN NaN NaN 98.667 1 98.667 98.167 99.167 0 NaN NaN NaN 0.00012192 1 22897 77.527 62.261 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4294 2227 3779 4025 4773 4773 4118 SGEGEVSGLMR 11 Oxidation (M),Phospho (STY) _S(ph)GEGEVSGLM(ox)R_ SGEGEVSGLM(1)R S(1)GEGEVSGLMR SGEGEVSGLM(74.78)R S(37.18)GEGEVS(-37.18)GLMR 0 1 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.829467773438 2 609.247035 1216.47952 35715.0141546164 1.9995 0.0012182 188070 114.58 188070 114.58 723.828319310332 41.692 0.59872 41.692 41.339 41.938 0 46 20 3 0.680507350450276 0.00154313696028268 0.0404033404361749 0.012383 1 9473 74.78 49.395 2 24731000 27118 23644 24936 23767 26038 29426 28551 27759 27181 8137.3 25653 22336 25253 24486 26393 29237 28905 28154 26878 8304.7 1 1 1 1 1 1 1 1 1 1 4295 942 3780 4026 4774 4774 126 1564 SGEGEVSGLMR 11 Phospho (STY) _S(ph)GEGEVSGLMR_ S(1)GEGEVSGLMR S(105.39)GEGEVS(-105.39)GLMR 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 715.832275390625 2 601.249578 1200.4846 36323.9072871621 1.4992 0.00090137 190570 114.58 190570 114.58 715.831174612783 58.969 1.0198 58.969 58.463 59.483 0 112 34 5 0.950311386290252 0.010535091633158 0.39631522955654 1.0063E-29 1 13814 303.79 263.2 2 125200000 59251 49525 59514 54968 93502 63107 111110 70925 50984 21129 56068 46816 60362 56238 93072 63030 110610 71477 52856 21537 1 1 1 1 1 1 1 1 1 1 4296 942 3780 4027 4775 4775 1564 SGETEDTFIADLVVGLCTGQIK 22 Unmodified _SGETEDTFIADLVVGLCTGQIK_ 0 0 0 0 P06733;P13929;P09104 P06733 P06733 ENO1;ENO3;ENO2 Alpha-enolase;Beta-enolase;Gamma-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.167236328125 3 785.057907 2352.15189 32580.0885120139 1.6144 0.0012674 194600 152.78 194610 152.78 938.501418449426 102.14 0.12006 102.14 102.07 102.19 0 10 3 4 0.912882655419558 0.012078158627895 0.114626921377063 2.1716E-17 1 24062 242.98 219.3 1 56721000 11531 14581 13950 11369 15800 13071 17034 15980 13904 224060 10920 13756 13933 11897 15939 13485 17194 22668 13852 211350 1 1 1 1 1 1 1 1 1 1 4297 314 3781 4028 4776 4776 SGGEMLK 7 Phospho (STY) _S(ph)GGEMLK_ S(1)GGEMLK S(60.97)GGEMLK 0 0 1 0 Q9P2D3 Q9P2D3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.327941894531 2 401.164254 800.313956 39611.639332165 1.312 0.00052634 571240 229.16 571250 229.16 630.327232385915 53.118 0.78553 53.118 52.87 53.656 0 57 27 3 0.951883001082453 0.00051863899180246 0.00386877967994473 0.030286 1 12348 60.973 11.555 1 140920000 51079 49888 50508 52073 43420 50586 46338 49375 52228 3740.1 48331 47140 50810 53309 44528 50763 47189 49686 51283 4664.5 1 1 1 1 1 1 1 1 1 1 4298 2108 3782 4029 4777 4777 3805 SGGIVISPFR 10 Phospho (STY) _SGGIVIS(ph)PFR_ SGGIVIS(1)PFR S(-33.86)GGIVIS(33.86)PFR 0 0 1 0 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.361206054688 2 556.778631 1111.54271 38618.3236097296 2.3922 0.0013319 205800 114.58 205800 114.58 671.360507001469 79.345 0.48056 79.345 79.164 79.644 -1.4211E-14 40 16 3 0.893828440645562 0.000887354361657189 0.0396504803831822 0.018816 1 18580 65.295 41.265 2 15809000 11175 12559 11648 11344 9166.7 11958 8400.9 10179 12394 9587.4 10576 11857 11670 11732 9441.9 11954 8697.5 10568 12060 9263.3 1 1 1 1 1 1 1 1 1 1 4299 1101 3783 4030 4778 4778 1916 SGGIVISPFRLEELTNR 17 Phospho (STY) _SGGIVIS(ph)PFRLEELTNR_ SGGIVIS(1)PFRLEELTNR S(-83.75)GGIVIS(83.75)PFRLEELT(-103.98)NR 0 0 1 1 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.058410644531 3 656.669857 1966.98774 36666.2032379703 1.7794 0.0011685 116330 76.388 116330 76.389 733.392155488116 96.673 0.72163 96.673 96.318 97.039 -1.4211E-14 101 24 5 0.991183479242656 0.00520202846310676 0.0651840845591571 5.5511E-11 1 22430 196.11 177.52 3 55189000 5473.8 6245.6 5840.4 5961.5 5241.4 5646.3 4730.7 5433.3 6584.1 10708 5181 5898.4 5851.6 6133.4 5348.9 5691.1 4890.7 5780.9 6417.9 10209 1 1 1 1 1 1 1 1 1 1 4300 1101 3784 4031 4779 4779 1916 SGGLQTPECLSR 12 Phospho (STY) _SGGLQTPECLS(ph)R_ SGGLQTPECLS(1)R S(-86.13)GGLQT(-51.43)PECLS(51.43)R 0 0 1 0 P85037 P85037 P85037 FOXK1 Forkhead box protein K1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.383605957031 2 692.799966 1383.58538 34419.646689122 1.6808 0.0011645 165390 114.58 165390 114.58 807.381079892007 50.03 0.73555 50.03 49.658 50.394 0 73 24 4 0.726472225973994 0.00201558443248519 0.0831527126190254 0.0050163 1 11583 92.661 72.28 3 44832000 24943 24515 25929 24572 19037 23596 23671 25153 27663 8193.8 23606 23158 25977 25211 19795 23730 23982 25417 27126 8297.6 1 1 1 1 1 1 1 1 1 1 4301 816 3785 4032 4780 4780 1309 SGGPSPKR 8 Phospho (STY) _SGGPS(ph)PKR_ SGGPS(1)PKR S(-41.74)GGPS(41.74)PKR 0 0 1 1 Q96E39 Q96E39 Q96E39 RBMXL1 RNA binding motif protein, X-linked-like-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.363220214844 2 433.200017 864.385481 38751.7398963283 2.3259 0.0010076 529000 229.16 529000 229.16 662.363038703385 25.134 0.26331 25.134 24.977 25.24 0 21 8 3 0.981177175545575 0.00217599197522855 0.0480023188472886 0.021846 1 5603 68.786 17.994 2 10919000 7706.1 10870 7340.8 9231.7 8134.4 7445.8 7615.9 8749.1 10547 2437.4 7290.5 10260 7421.5 9550.1 8203.4 7563.9 7857.5 8798.9 10283 2497.6 1 1 1 1 1 1 1 1 1 1 4302 1669 3786 4033 4781 4781 3075 SGLCSPSYVAVTPFSLR 17 Phospho (STY) _SGLCS(ph)PSYVAVTPFSLR_ S(0.006)GLCS(0.94)PS(0.054)YVAVTPFSLR S(-22.3)GLCS(12.38)PS(-12.38)Y(-34.86)VAVT(-90.72)PFS(-100.23)LR 0 0 1 0 P01106 P01106 P01106 MYC Myc proto-oncogene protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.692199707031 3 640.969026 1919.88525 38367.8844346229 1.7794 0.0011405 119180 76.388 119180 76.389 717.357284303327 97.974 0.49351 97.974 97.702 98.195 0 39 16 4 0.981659932519278 0.00243252062806368 0.0398790508049798 7.6999E-05 1 22741 109.65 88.987 6 4934400 2480.7 2587 2977.1 2794.1 2458.6 3048.4 3261.1 3028.6 2850.3 10430 2349.3 2445.1 2964.4 2860.4 2536.6 3063.6 3269.8 3353 2829.8 9891.6 1 1 1 1 1 1 1 1 1 1 4303 283 3787 4034 4782 4782 469 SGLSDLAESLTNDNETNS 18 Unmodified _SGLSDLAESLTNDNETNS_ 0 0 0 0 Q96FV9 Q96FV9 Q96FV9 THOC1 THO complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1048.99060058594 2 933.913606 1865.81266 29865.9746161041 1.0681 0.00099755 122690 114.58 122690 114.58 1048.99642963372 88.29 0.48059 88.29 88.027 88.507 -1.4211E-14 42 16 3 0.839029441170171 0.00154148046585037 0.0456906893594195 3.9893E-10 1 20569 182.08 144.66 1 25929000 3148.3 5018.8 3562.7 4435.5 5706.7 3761.2 4655.5 5565.8 5554.8 34444 2980.7 4737.7 3587.9 4579 5650.5 3887.6 4814 6550.8 5442.8 32562 1 1 1 1 1 1 1 1 1 1 4304 1679 3788 4035 4783 4783 SGLSLEELR 9 Phospho (STY) _SGLS(ph)LEELR_ S(0.006)GLS(0.994)LEELR S(-22.42)GLS(22.42)LEELR 0 0 1 0 O60333 O60333 O60333 KIF1B Kinesin-like protein KIF1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.8408203125 2 542.257729 1082.5009 39158.9699786468 2.3581 0.0012787 211300 114.58 211310 114.58 656.839084177297 74.173 0.64511 74.173 73.895 74.54 0 50 21 3 0.985341906491449 0.00294311576390683 0.156723187348437 0.00053414 1 17406 109.72 48.368 2 22220000 8337.7 16749 8705.4 16791 21872 9606.8 23072 18526 15800 7781.9 7891 15822 8908.2 17122 21429 10076 23229 18472 15898 7756.4 1 1 1 1 1 1 1 1 1 1 4305 143 3789 4036 4784 4784 244 SGLTVPTSPK 10 Phospho (STY) _SGLTVPTS(ph)PK_ SGLTVPT(0.004)S(0.996)PK S(-99.68)GLT(-63.46)VPT(-23.95)S(23.95)PK 0 0 1 0 Q53EL6 Q53EL6 Q53EL6 PDCD4 Programmed cell death protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.926574707031 2 533.762647 1065.51074 35641.3602475934 1.8196 0.00097123 429330 229.16 429340 229.16 762.926158388323 59.75 1.4072 59.75 59.396 60.803 7.1054E-15 150 48 6 0.995008695038169 0.0103529917885743 0.495562947191233 2.0455E-09 1 13957 178.36 137.48 4 1646600000 74072 22083 72178 23832 92416 66343 99271 63922 22814 9146.1 70084 20871 73048 25047 92614 64589 98627 64488 25754 10092 1 1 1 1 1 1 1 1 1 1 4306 1145 3790 4037 4785 4785 1991 SGLTVPTSPKGR 12 Phospho (STY) _SGLTVPTS(ph)PKGR_ SGLT(0.001)VPT(0.064)S(0.935)PKGR S(-43.22)GLT(-29.22)VPT(-11.64)S(11.64)PKGR 0 0 1 1 Q53EL6 Q53EL6 Q53EL6 PDCD4 Programmed cell death protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.995300292969 3 427.218382 1278.63332 41046.0584252475 1.0585 0.00045221 357600 152.78 357610 152.78 579.993539231408 50.647 0.65658 50.647 50.364 51.021 0 60 22 4 0.694410198697912 0.00224349565004188 0.0295162825878846 0.010501 1 11744 69.431 52.706 4 40683000 13166 6797.8 14152 6887.2 20933 12300 24624 14984 8904.8 3138.9 12462 6422.1 14284 7153.1 20880 12127 24458 15021 9453.1 3302.4 1 1 1 1 1 1 1 1 1 1 4307 1145 3791 4038 4786 4786 1991 SGMSPEQSR 9 Oxidation (M),Phospho (STY) _SGM(ox)S(ph)PEQSR_ SGM(1)SPEQSR S(0.015)GMS(0.985)PEQSR SGM(89.73)SPEQSR S(-18.21)GMS(18.21)PEQS(-59.8)R 0 1 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.281372070313 2 537.699721 1073.38489 38357.0034230105 2.2097 0.0011881 213100 114.58 213100 114.58 652.281199816991 21.505 0.71696 21.505 21.224 21.941 0 64 24 4 0.99039730494022 0.00282756128518602 0.0237174487666326 0.0056117 1 4840 89.731 52.173 3 11597000 2100.1 2168.5 1552 1657.2 1044.6 1787.6 1357.8 1340.4 1666.9 2103.3 1985.1 2045.6 1588.7 1734.9 1094.7 1784.4 1375.6 1425.2 1631.6 2011.5 1 1 1 1 1 1 1 1 1 1 4308 2226 3792 4039 4787 4787 242 4079 SGMSPEQSR 9 Phospho (STY) _SGMS(ph)PEQSR_ S(0.074)GMS(0.926)PEQSR S(-10.97)GMS(10.97)PEQS(-94.38)R 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 644.281860351563 2 529.702264 1057.38997 38769.1385476967 1.8926 0.0010025 216310 114.58 216310 114.58 644.28324034124 28.885 0.66788 28.885 28.552 29.22 0 66 22 4 0.917152109070098 0.00308011737485382 0.043514816921722 4.4162E-06 1 6405 157.54 109.98 3 57551000 21182 19231 20348 20443 14658 18700 16413 20998 20337 5379.9 20040 18174 20471 20888 15239 18860 16730 21135 19900 5551.8 1 1 1 1 1 1 1 1 1 1 4309 2226 3792 4040 4788 4788 4079 SGNWESSEGWGAQPEGAGAQR 21 Phospho (STY) _S(ph)GNWESSEGWGAQPEGAGAQR_ S(0.993)GNWES(0.006)S(0.001)EGWGAQPEGAGAQR S(22.08)GNWES(-22.08)S(-29.51)EGWGAQPEGAGAQR 0 0 1 0 Q9Y5X1 Q9Y5X1 Q9Y5X1 SNX9 Sorting nexin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.025329589844 3 747.637944 2239.892 36648.9980976532 2.1482 0.0016061 102170 76.387 102170 76.388 824.358941970348 63.416 0.34842 63.416 63.285 63.633 7.1054E-15 24 11 3 0.972991981884065 0.00100509766773403 0.00875996813209732 6.0255E-05 1 14897 106.27 95.216 3 5649400 7158.2 9381.3 7813 9844.8 7154.6 8345.4 8301.8 9026.8 10860 10376 6775.9 8864.8 7823.7 10056 7318 8460 8465.4 9340.8 10607 9979.5 1 1 1 1 1 1 1 1 1 1 4310 2302 3793 4041 4789 4789 4242 SGPKPFSAPKPQTSPSPK 18 2 Phospho (STY) _SGPKPFSAPKPQTS(ph)PS(ph)PK_ S(0.002)GPKPFS(0.003)APKPQT(0.228)S(0.797)PS(0.969)PK S(-28.61)GPKPFS(-26.02)APKPQT(-5.88)S(5.88)PS(14.2)PK 0 0 2 2 Q01518 Q01518 Q01518 CAP1 Adenylyl cyclase-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.646850585938 4 500.233791 1996.90606 37045.0372361537 2.23 0.0011155 458110 229.16 458110 229.16 729.897404372128 59.231 1.5357 59.231 58.201 59.736 7.1054E-15 130 52 4 0.967746755906359 0.00237253833626007 0.0413979794148679 0.056162 1 13850 44.625 25.745 10 52625000 20329 15642 20031 15949 14530 21424 13588 16723 16595 11225 19235 14778 20118 16445 15059 21193 13959 17295 16246 10956 1 1 1 1 1 1 1 1 1 1 4311 838 3794 4042 4790 4790 1352;1353 SGPPAPEEEEEEER 14 Unmodified _SGPPAPEEEEEEER_ 0 0 0 0 Q9NTI5 Q9NTI5 Q9NTI5 PDS5B Sister chromatid cohesion protein PDS5 homolog B MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 907.421813964844 2 792.836639 1583.65872 NaN NaN NaN NaN NaN NaN NaN NaN 34.114 1 34.114 33.614 34.614 0 NaN NaN NaN 1.3195E-05 1 7641 136.01 100.84 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4312 2031 3795 4043 4791 4791 SGPPSPPSTATSFGGPRPR 19 Phospho (STY) _SGPPS(ph)PPSTATSFGGPRPR_ SGPPS(1)PPSTATSFGGPRPR S(-34.87)GPPS(34.87)PPS(-41.31)T(-69.18)AT(-109.15)S(-127.51)FGGPRPR 0 0 1 1 Q6ZRS2 Q6ZRS2 Q6ZRS2 SRCAP Helicase SRCAP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.69287109375 3 644.970306 1931.88909 37741.3087806145 1.4764 0.00095226 118440 76.387 118440 76.388 721.357653973269 50.227 1.1889 50.227 49.572 50.761 0 95 40 3 0.924175571692219 0.00180936278249552 0.0184557041629251 6.1252E-08 1 11633 164.89 146.59 6 31729000 11311 11559 11579 13532 13294 12579 12975 13037 12760 6755.2 10705 10931 11665 13759 13385 12669 13217 13263 12600 6662.6 1 1 1 1 1 1 1 1 1 1 4313 1295 3796 4044 4792 4792 2314 SGPTDDGEEEMEEDTVTNGS 20 Unmodified _SGPTDDGEEEMEEDTVTNGS_ 0 0 0 0 P09661 P09661 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1164.47973632813 2 1049.89749 2097.78043 28872.0748683166 1.1797 0.0012385 109140 114.58 109140 114.58 1164.47905355374 50.898 0.37552 50.898 50.732 51.108 7.1054E-15 39 12 4 0.960087333060975 0.000636343833840868 0.0127181970125827 1.8697E-15 1 11832 220.23 200.02 1 16080000 3258.7 3844.6 3011 3104.8 3481.6 3350.6 2188.6 3544.8 2859.1 2965.8 3082.6 3627.7 3049.5 3237 3487.7 3355.5 2308.3 3637.5 2792.7 2874.7 1 1 1 1 1 1 1 1 1 1 4314 342 3797 4045 4793 4793 SGRSPQEASSTK 12 Phospho (STY) _SGRS(ph)PQEASSTK_ S(0.009)GRS(0.991)PQEASSTK S(-20.49)GRS(20.49)PQEAS(-71.38)S(-89.07)T(-94.14)K 0 0 1 1 Q6ZN17 Q6ZN17 Q6ZN17 LIN28B Protein lin-28 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.637756347656 3 438.861034 1313.56127 40456.8322957386 1.461 0.00064117 348120 152.78 348120 152.78 591.636916494131 25.499 0.48845 25.499 25.27 25.759 0 54 16 5 0.993136673874731 0.0121927020050095 0.181153458202214 3.0349E-07 1 5675 147.53 109.98 5 60019000 2038.6 25755 2306.1 22457 13870 2216.5 14913 15112 24782 2075.4 1930 24311 2450.3 22934 13417 3290.7 15400 14721 24034 2304 1 1 1 1 1 1 1 1 1 1 4315 1290 3798 4046 4794 4794 2303 SGRSPTGNTPPVIDSVSEK 19 Phospho (STY) _S(ph)GRSPTGNTPPVIDSVSEK_ S(0.654)GRS(0.343)PT(0.003)GNTPPVIDSVSEK S(2.8)GRS(-2.8)PT(-24.1)GNT(-33.55)PPVIDS(-103.96)VS(-128.95)EK 0 0 1 1 P25054 P25054 P25054 APC Adenomatous polyposis coli protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.758728027344 3 669.984281 2006.93101 34507.7839630913 1.9344 0.001296 228030 152.78 228030 152.78 823.093960272123 58.795 0.49487 58.795 58.581 59.075 0 43 16 4 0.893605984565351 0.00140417510109518 0.0173656359997637 1.2205E-07 1 13774 153.82 119.73 6 12637000 10479 13509 12493 14223 8794.9 10305 9547.2 12238 15986 11917 9923 12766 12420 14497 9160.1 10551 9858.4 12560 15500 11505 1 1 1 1 1 1 1 1 1 1 4316 472 3799 4047 4795 4795 785 SGSAAQAEGLCK 12 Phospho (STY) _S(ph)GSAAQAEGLCK_ S(0.5)GS(0.5)AAQAEGLCK S(0)GS(0)AAQAEGLCK 0 0 1 0 Q92685 Q92685 Q92685 ALG3 Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.951782226563 3 420.175965 1257.50607 41588.3380334434 0.58717 0.00024672 363600 152.78 363600 152.78 572.951647141549 47.187 0.48596 47.187 46.858 47.344 0 48 17 4 0.962974071032628 0.0071236802679477 0.218996530488874 5.9083E-05 1 10876 124.25 73.897 2 143110000 27648 16813 27989 19546 23466 26266 23572 26348 18630 5773.6 26164 15898 28109 20010 24077 26040 23854 26600 18592 6046.3 1 1 1 1 1 1 1 1 1 1 4317 1615 3800 4048 4796 4796 2982;2983 SGSAAQAEGLCK 12 Phospho (STY) _S(ph)GSAAQAEGLCK_ S(0.5)GS(0.5)AAQAEGLCK S(0)GS(0)AAQAEGLCK 0 0 1 0 Q92685 Q92685 Q92685 ALG3 Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.952209472656 3 420.175965 1257.50607 42307.8584814445 1.0945 0.0004599 363600 152.78 363600 152.78 572.951146772077 48.074 0.5587 48.074 47.917 48.475 0 22 18 2 0.909183143965964 0.000789455483575562 0.00719529942424247 0.0053316 1 11154 85.554 38.293 2 17672000 12499 10866 13190 13387 8926.6 10247 9277.3 11947 12278 4452 11830 10279 13190 13541 9318.2 10441 9508.9 12052 11988 4468.6 1 1 1 1 1 1 1 1 1 1 4318 1615 3800 4048 4797 4797 2982;2983 SGSDAGEARPPTPASPR 17 Phospho (STY) _SGSDAGEARPPTPAS(ph)PR_ SGSDAGEARPPT(0.031)PAS(0.969)PR S(-66.2)GS(-61.67)DAGEARPPT(-14.93)PAS(14.93)PR 0 0 1 1 Q96FS4 Q96FS4 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.647399902344 3 578.259857 1731.75774 39044.9892880551 1.8996 0.0010985 132100 76.386 132100 76.388 654.646647075653 31.426 0.55407 31.426 31.12 31.674 0 39 18 3 0.958446832774439 0.00102923381391763 0.0160506081525363 0.0074468 1 6998 80.98 62.842 4 10873000 7372.4 8247 7681.3 7576.4 8606 5691.2 9021 8883.1 7696.4 3201.2 6977.3 7786.8 7729 7789.9 8683.4 5834.7 9126.4 8883.2 7650.2 3219.9 1 1 1 1 1 1 1 1 1 1 4319 1678 3801 4049 4798 4798 3090;3091 SGSDAGEARPPTPASPR 17 Phospho (STY) _SGS(ph)DAGEARPPTPASPR_ S(0.293)GS(0.707)DAGEARPPTPASPR S(-3.83)GS(3.83)DAGEARPPT(-53.31)PAS(-68.11)PR 0 0 1 1 Q96FS4 Q96FS4 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.646057128906 3 578.259857 1731.75774 38502.4565053432 1.662 0.00096105 132100 76.387 132100 76.388 654.98187216046 32.477 1.1703 32.477 31.912 33.082 0 100 39 4 0.856836855005845 0.00165827330841392 0.0187453911640202 0.00041727 2 7203 100.47 77.481 4 30659000 30956 28066 31918 27172 34669 31983 34900 28550 24342 5891.9 29296 26508 32118 28031 35013 31811 35225 28948 24466 6208.7 2 2 2 2 2 2 2 2 2 2 4320 1678 3801 4049 4799;4800 4799 3090;3091 SGSEEAVTDPGER 13 Phospho (STY) _SGS(ph)EEAVTDPGER_ S(0.01)GS(0.99)EEAVTDPGER S(-19.89)GS(19.89)EEAVT(-41.98)DPGER 0 0 1 0 Q92508 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.864807128906 2 707.280118 1412.54568 34709.8954557794 1.2955 0.00091631 162000 114.58 162000 114.58 821.861668030308 34.168 0.49659 34.168 33.962 34.459 0 33 16 3 0.897328396317055 0.000709911077505898 0.0164343981899061 2.0459E-10 1 7635 181.76 158.66 3 20696000 7716.5 10234 7171.5 10960 15671 7823.3 15060 10262 9474 3254.8 7299.7 9671.6 7355.5 11158 15387 8018.3 15206 10297 9584.9 3302.3 1 1 1 1 1 1 1 1 1 1 4321 1592 3802 4050 4801 4801 2923 SGSELPSILPEIWPK 15 Phospho (STY) _S(ph)GSELPSILPEIWPK_ S(0.5)GS(0.5)ELPSILPEIWPK S(0)GS(0)ELPS(-35.67)ILPEIWPK 0 0 1 0 Q96FF9 Q96FF9 Q96FF9 CDCA5 Sororin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.39990234375 3 578.290094 1731.84845 37441.5917494819 1.5761 0.00091142 264190 152.78 264190 152.78 731.399463250119 102.12 0.26327 102.12 102.01 102.28 -1.4211E-14 21 8 5 0.927145596306299 0.00363352690538878 0.0409920744644368 1.5656E-10 1 24061 183.31 157.99 3 19965000 8319.9 9731.6 7479.7 10793 7919.1 7810.2 7268.7 9653.8 10820 22093 7869.6 9199.2 7584 10969 8004.5 8026.4 7527.4 10278 10525 21026 1 1 1 1 1 1 1 1 1 1 4322 1677 3803 4051 4802 4802 3086;3087 SGSESEEAELSLSLAR 16 Phospho (STY) _S(ph)GSESEEAELSLSLAR_ S(0.483)GS(0.483)ES(0.035)EEAELSLSLAR S(0)GS(0)ES(-11.43)EEAELS(-110.59)LS(-131.5)LAR 0 0 1 0 Q8IV50 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.649047851563 3 582.259411 1743.7564 NaN NaN NaN NaN NaN NaN NaN NaN 77.408 1 77.408 76.908 77.908 0 NaN NaN NaN 2.139E-08 1 18151 138.23 120.09 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4323 1409 3804 4052 4803 4803 2568;2569 SGSGEIGSETSDKK 14 Phospho (STY) _SGS(ph)GEIGSETSDKK_ S(0.293)GS(0.707)GEIGSETSDKK S(-3.83)GS(3.83)GEIGS(-35.81)ET(-39.53)S(-43.16)DKK 0 0 1 1 A0JNW5 A0JNW5 A0JNW5 UHRF1BP1L UHRF1-binding protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.373352050781 3 487.875009 1460.6032 37869.333186518 2.464 0.0012021 469720 229.16 469720 229.16 717.371578897885 41.667 0.57162 41.667 41.339 41.911 7.1054E-15 53 19 4 0.612621615822712 0.00328100232411943 0.0263280403156003 0.036026 1 9510 52.424 34.011 5 34413000 48290 31243 58566 32986 27610 57075 24657 36647 33550 57384 45733 29524 57997 34150 29813 55986 25485 39280 32726 54882 1 1 1 1 1 1 1 1 1 1 4324 2 3805 4053 4804 4804 5 SGSGGGSAKEPQEER 15 Phospho (STY) _SGS(ph)GGGSAKEPQEER_ S(0.104)GS(0.896)GGGSAKEPQEER S(-9.37)GS(9.37)GGGS(-37.72)AKEPQEER 0 0 1 1 Q9H4A3 Q9H4A3 Q9H4A3 WNK1 Serine/threonine-protein kinase WNK1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.327392578125 3 519.217658 1554.63114 38234.1112598073 1.4354 0.0007453 294240 152.78 294240 152.78 671.993034000759 26.841 0.55993 26.841 26.65 27.21 0 56 18 5 0.994633578889041 0.0147105630145252 0.0836649114592193 3.7891E-08 1 5971 174.26 145.9 3 116230000 45207 16016 48995 17112 24297 47226 24170 32944 18261 8533.7 42792 15136 48815 17987 26107 45830 24447 33856 18269 8798 1 1 1 1 1 1 1 1 1 1 4325 1936 3806 4054 4805 4805 3506 SGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP 38 Unmodified _SGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP_ 0 0 0 1 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1340.9794921875 3 1187.87109 3560.59144 26946.0102826509 1.8103 0.0021504 128610 152.77 128610 152.78 1340.97972703922 72.795 0.40893 72.795 72.604 73.013 0 34 13 4 0.714732765465507 0.000681116995639866 0.0219093181283627 1.6775E-12 1 17115 196.85 187.14 1 11472000 1775.8 1265.9 1500.1 1332.5 2814.2 1458 3520.1 2560.5 1893.6 6587.1 1679.3 1196.3 1543.8 1366.1 2786.7 1482 3504.7 2724.1 1937.4 6261.8 1 1 1 1 1 1 1 1 1 1 4326 403 3807 4055 4806 4806 SGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP 38 Phospho (STY) _S(ph)GSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP_ S(0.354)GS(0.354)GPS(0.291)LKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP S(0)GS(0)GPS(-0.86)LKGEEEPLVAS(-85.61)EDGAVDAPAPDEPEGGDGAAP 0 0 1 1 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1026.2294921875 4 911.146719 3640.55777 30279.6258588848 1.6786 0.0015294 125760 114.58 125760 114.58 1026.2305229956 76.726 0.58174 76.726 76.417 76.998 0 101 19 7 0.979262085643197 0.00531514326713658 0.0783276698638841 7.6022E-13 2 17967 198.21 187.95 4 43103000 4609.6 5396.1 3109.2 5610.6 13457 4859.3 12300 7772.5 7487.1 37048 4356.2 5098.7 3341.6 5735.6 13024 5010.6 12444 8799.9 7591.7 35065 2 2 2 2 2 2 2 2 2 2 4327 403 3807 4056 4807;4808 4807 640;641;642 SGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP 38 Phospho (STY) _SGSGPS(ph)LKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP_ S(0.028)GS(0.023)GPS(0.949)LKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP S(-15.25)GS(-16.18)GPS(15.25)LKGEEEPLVAS(-101.63)EDGAVDAPAPDEPEGGDGAAP 0 0 1 1 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1367.97387695313 3 1214.52653 3640.55777 27157.5513690656 1.5865 0.0019269 125790 152.78 125790 152.78 1367.97036991161 76.74 0.41107 76.74 76.501 76.912 0 41 13 5 0.966904264375612 0.00216857668437569 0.0485044664726357 4.8077E-26 1 17995 273.1 252.17 4 14127000 1035.2 1436.9 999.01 1031.2 5447.5 1374.7 5425.2 2891.4 1722.2 6759.7 979.45 1355.1 1062.5 1089.1 5261.7 1394.4 5422 3045.2 1856.3 6432 1 1 1 1 1 1 1 1 1 1 4328 403 3807 4056 4809 4809 640;641;642 SGSIKGSR 8 2 Phospho (STY) _S(ph)GS(ph)IKGSR_ S(1)GS(0.999)IKGS(0.001)R S(61.41)GS(31.15)IKGS(-31.15)R 0 0 2 1 Q16629 Q16629 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.352722167969 2 476.188465 950.362376 37253.8619524078 2.4635 0.0011731 481240 229.16 481250 229.16 705.3512932481 30.911 3.3019 30.911 29.954 33.256 3.5527E-15 334 111 5 0.977159706408686 0.0118009978936517 0.499132185642577 0.0020042 2 6931 99.985 80.429 3 100550000 108580 85669 105890 85887 102260 99482 104310 98192 89168 8924.3 102730 80930 106740 88391 104010 99110 105670 98813 88624 10676 2 2 2 2 2 2 2 2 2 2 4329 1109 3808 4057 4810;4811 4810 1929;1930 SGSISVK 7 Phospho (STY) _SGS(ph)ISVK_ S(0.029)GS(0.896)IS(0.074)VK S(-14.85)GS(10.81)IS(-10.81)VK 0 0 1 0 Q8TF01 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 608.341430664063 2 379.178219 756.341885 39803.1058968812 0.85438 0.00032396 604370 229.16 604370 229.16 608.34127810528 47.583 0.46655 47.583 47.395 47.862 -7.1054E-15 37 16 3 0.602955783672809 0.00162251837568863 0.0122073084567697 0.04616 1 11002 53.124 42.25 3 75547000 72223 28926 73716 24156 31900 67054 31352 43331 30722 4985.3 68347 27299 73629 25783 34833 65009 31922 44534 30340 5697.1 1 1 1 1 1 1 1 1 1 1 4330 1556 3809 4058 4812 4812 2859 SGSPDVK 7 Phospho (STY) _SGS(ph)PDVK_ S(0.043)GS(0.957)PDVK S(-13.51)GS(13.51)PDVK 0 0 1 0 Q9UPW6 Q9UPW6 Q9UPW6 SATB2 DNA-binding protein SATB2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.3232421875 2 385.160026 768.305499 40315.4826159664 1.8279 0.00070403 594980 229.16 594980 229.16 614.322649702078 35.286 0.70409 35.286 35.006 35.71 -7.1054E-15 61 23 4 0.983240685491009 0.00735517410678593 0.229439778871607 0.0013862 1 7918 117.31 67.965 2 117970000 148300 60787 139630 56875 10289 140570 15391 66261 63148 3323.3 140290 57401 139530 59982 18196 136240 16729 69445 60283 4662.8 1 1 1 1 1 1 1 1 1 1 4331 2222 3810 4059 4813 4813 4026;4027 SGSPDVKGPPPVK 13 Phospho (STY) _S(ph)GSPDVKGPPPVK_ S(0.546)GS(0.454)PDVKGPPPVK S(0.8)GS(-0.8)PDVKGPPPVK 0 0 1 1 Q9UPW6 Q9UPW6 Q9UPW6 SATB2 DNA-binding protein SATB2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.388549804688 3 448.890154 1343.64863 38141.0490928405 2.2601 0.0010145 510510 229.16 510510 229.16 678.052189254543 51.028 0.67001 51.028 50.761 51.431 7.1054E-15 52 22 3 0.749758563823768 0.00324804353927915 0.0303248265598836 0.0071954 1 11891 80.609 65.919 2 21957000 30917 13135 33018 15621 9361.4 31782 8803 18756 17255 5214.5 29264 12422 32836 16147 10897 30982 9218.9 19476 16667 5344.1 1 1 1 1 1 1 1 1 1 1 4332 2222 3811 4060 4814 4814 4026;4027 SGSPISSEER 10 Phospho (STY) _SGS(ph)PISSEER_ S(0.058)GS(0.758)PIS(0.058)S(0.127)EER S(-11.18)GS(7.76)PIS(-11.18)S(-7.76)EER 0 0 1 0 P0CAP2 P0CAP2 P0CAP2 POLR2M DNA-directed RNA polymerase II subunit GRINL1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.315795898438 2 564.732075 1127.4496 37962.2440231085 1.9553 0.0011042 202900 114.58 202900 114.58 679.315640425898 31.195 0.56 31.195 30.942 31.502 0 42 18 4 0.46454510518522 0.00168207879050009 0.0543109516697927 0.011689 1 6986 79.286 47.077 4 11081000 14467 18062 14810 18895 15601 16285 14597 16242 20761 4207.6 13691 17067 14901 19308 15777 16447 15075 16420 20223 4337.9 1 1 1 1 1 1 1 1 1 1 4333 349 3812 4061 4815 4815 566 SGSPRPTEPTDFLMLFEGSPSGK 23 Oxidation (M),Phospho (STY) _SGS(ph)PRPTEPTDFLM(ox)LFEGSPSGK_ SGSPRPTEPTDFLM(1)LFEGSPSGK S(0.122)GS(0.531)PRPT(0.316)EPT(0.032)DFLMLFEGSPSGK SGSPRPTEPTDFLM(161.05)LFEGSPSGK S(-6.4)GS(2.25)PRPT(-2.25)EPT(-12.26)DFLMLFEGS(-100.67)PS(-115.39)GK 0 1 1 1 Q9UPN4 Q9UPN4 Q9UPN4 CEP131 Centrosomal protein of 131 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 997.824523925781 3 845.048733 2532.12437 30939.8105909651 2.3146 0.001956 180790 152.78 180790 152.78 997.823314433207 100.31 0.16556 100.31 100.23 100.39 0 17 5 4 0.962620246924923 0.00294200648322471 0.0473619510414974 5.4199E-08 1 23432 161.05 129.82 6 53788000 19538 16372 17131 17545 21810 19475 22401 20284 17158 66891 18479 15472 17446 17974 21860 19570 22631 22331 17152 63456 1 1 1 1 1 1 1 1 1 1 4334 2212 3813 4062 4816 4816 234 4005;4006 SGSPRPTEPTDFLMLFEGSPSGK 23 Phospho (STY) _S(ph)GSPRPTEPTDFLMLFEGSPSGK_ S(0.491)GS(0.491)PRPT(0.014)EPT(0.005)DFLMLFEGSPSGK S(0)GS(0)PRPT(-15.43)EPT(-20.21)DFLMLFEGS(-137.49)PS(-159.1)GK 0 0 1 1 Q9UPN4 Q9UPN4 Q9UPN4 CEP131 Centrosomal protein of 131 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.622741699219 4 630.03964 2516.12946 37397.2409916557 1.8252 0.00115 181860 114.58 181870 114.58 745.122257438084 100.76 0.14081 100.76 100.7 100.84 0 16 4 5 0.287163967820967 0.00112091112374959 0.0186576379991197 3.0441E-12 1 23608 187.43 152.78 6 39347000 10751 12648 12234 12776 13242 12478 15149 15011 12902 15361 10179 11949 12249 13105 13404 12582 15267 15421 12825 14811 1 1 1 1 1 1 1 1 1 1 4335 2212 3813 4063 4817 4817 4005;4006 SGSPVATFK 9 Phospho (STY) _SGS(ph)PVATFK_ S(0.403)GS(0.597)PVATFK S(-1.72)GS(1.72)PVAT(-57.24)FK 0 0 1 0 Q9BQ67 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.39013671875 2 487.223158 972.431763 37310.5628632247 2.1997 0.0010717 470350 229.16 470350 229.17 716.388047840662 59.557 0.39944 59.557 59.365 59.764 0 34 13 3 0.824545602780861 0.00203160547305751 0.118126339785964 0.00055992 1 13952 108.3 86.793 3 20901000 31671 31930 30431 33278 31893 30844 32062 31524 36372 8946.1 29964 30171 30732 34047 32285 31050 32747 31864 35705 9153.4 1 1 1 1 1 1 1 1 1 1 4336 1802 3814 4064 4818 4818 3309 SGSSPEVK 8 Phospho (STY) _SGS(ph)SPEVK_ S(0.004)GS(0.498)S(0.498)PEVK S(-21.22)GS(0)S(0)PEVK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.845520019531 2 435.683865 869.353178 39854.4569909259 1.5195 0.00066202 525980 229.16 525980 229.16 664.846620731068 35.722 0.58075 35.722 35.445 36.026 0 53 19 4 0.59241943221417 0.00261139449179363 0.0772238693378861 0.00072672 1 8004 121.93 68.526 3 97761000 63732 44640 61282 44383 34779 60738 37485 48189 47797 4250 60298 42169 61529 45850 36907 60001 38309 48951 46724 5117.2 1 1 1 1 1 1 1 1 1 1 4337 2226 3815 4065 4819 4819 4080;4081 SGSSQELDVKPSASPQER 18 Phospho (STY) _SGSSQELDVKPSAS(ph)PQER_ SGSSQELDVKPS(0.034)AS(0.966)PQER S(-51.92)GS(-48.9)S(-47.07)QELDVKPS(-14.52)AS(14.52)PQER 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.075134277344 3 661.300269 1980.87898 34266.7369474361 1.9346 0.0012794 231020 152.78 231020 152.78 814.410574154183 46.785 0.4016 46.785 46.574 46.976 0 30 13 3 0.74883568370701 0.00139013280651103 0.011687097027134 0.012747 1 10806 66.371 28.811 5 13139000 20513 21271 21266 21218 21334 22362 20237 21913 20678 13312 19414 20093 21369 21808 21631 22383 20665 22399 20384 13042 1 1 1 1 1 1 1 1 1 1 4338 2226 3816 4066 4820 4820 4082;4083 SGSSQELDVKPSASPQER 18 Phospho (STY) _SGSS(ph)QELDVKPSASPQER_ S(0.035)GS(0.202)S(0.763)QELDVKPSASPQER S(-13.4)GS(-5.77)S(5.77)QELDVKPS(-58.88)AS(-75.41)PQER 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.409057617188 3 661.300269 1980.87898 34922.5391469554 1.3703 0.00090617 231020 152.77 231020 152.78 814.409635704536 48.043 0.90786 48.043 47.511 48.418 0 66 30 4 0.884020547709701 0.00426050967773563 0.0188786942033562 1.8865E-07 1 11138 148.09 125.77 5 44215000 32623 20969 31280 23870 26469 34951 26532 28677 23869 9175 30865 19825 31516 24510 27143 34477 26931 29285 23664 9303.1 1 1 1 1 1 1 1 1 1 1 4339 2226 3816 4066 4821 4821 4082;4083 SGSSQELDVKPSASPQER 18 2 Phospho (STY) _SGSS(ph)QELDVKPSAS(ph)PQER_ S(0.072)GS(0.099)S(0.829)QELDVKPS(0.014)AS(0.986)PQER S(-10.61)GS(-9.24)S(9.24)QELDVKPS(-18.41)AS(18.41)PQER 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.731628417969 3 687.955713 2060.84531 33680.4761919903 2.1638 0.0014886 222070 152.78 222070 152.78 841.066410985581 51.328 0.78258 51.328 50.936 51.718 7.1054E-15 71 26 4 0.977094754989179 0.00164377104173355 0.00919313078001049 3.5357E-05 1 11943 122.04 86.648 10 13424000 16724 11643 17380 12483 10888 16589 10727 13145 11919 18183 15828 11004 17383 12832 11431 16436 10959 13867 11710 17426 1 1 1 1 1 1 1 1 1 1 4340 2226 3816 4067 4822 4822 4082;4083 SGSSSPDSEITELK 14 Phospho (STY) _SGSSS(ph)PDSEITELK_ SGSS(0.025)S(0.975)PDSEITELK S(-67.89)GS(-43.87)S(-15.93)S(15.93)PDS(-82.11)EIT(-159.64)ELK 0 0 1 0 P17812 P17812 P17812 CTPS1 CTP synthase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 987.990600585938 2 758.824358 1515.63416 30751.8591030329 1.9109 0.00145 302000 229.16 302000 229.16 987.987559312923 69.067 1.1726 69.067 68.732 69.904 0 99 39 4 0.978295143893012 0.00120056674607154 0.0210049927566634 3.7965E-53 1 16171 364.92 308.94 6 56139000 18040 24227 18157 23320 19750 16562 18932 22781 25833 17142 17071 22881 18294 23891 19943 17013 19499 23126 25197 16669 1 1 1 1 1 1 1 1 1 1 4341 420 3817 4068 4823 4823 678 SGSSSPDSEITELKFPSINHD 21 Phospho (STY) _SGSSS(ph)PDSEITELKFPSINHD_ S(0.016)GS(0.042)S(0.165)S(0.659)PDS(0.118)EIT(0.001)ELKFPSINHD S(-16.25)GS(-11.96)S(-6.01)S(6.01)PDS(-7.48)EIT(-30.23)ELKFPS(-102.19)INHD 0 0 1 1 P17812 P17812 P17812 CTPS1 CTP synthase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 929.114807128906 3 776.340682 2326.00022 33238.3341366728 1.6703 0.0012967 196790 152.77 196790 152.78 929.449204825233 85.589 0.54258 85.589 85.357 85.9 0 49 18 4 0.901923071506209 0.00156593191808038 0.023550406478711 1.5447E-08 1 19987 171.16 149.15 7 10354000 5361.5 6414.8 4627.9 6152 5129.2 5997.5 11618 11427 6849.1 35282 5070.6 6058.3 4720.6 6330.3 5262.8 6153 11384 12315 6960.2 33487 1 1 1 1 1 1 1 1 1 1 4342 420 3818 4069 4824 4824 678 SGSSSVAAMK 10 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)S(ph)GSSSVAAM(ox)K_ SGSSSVAAM(1)K S(0.7)GS(0.257)S(0.037)S(0.006)VAAMK SGSSSVAAM(53.77)K S(4.36)GS(-4.36)S(-12.75)S(-20.93)VAAMK 1 1 1 0 P63218 P63218 P63218 GNG5 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.295288085938 2 531.712297 1061.41004 39139.165487315 1.6788 0.00089261 215500 114.58 215500 114.58 646.293594367125 35.387 0.47185 35.387 35.15 35.622 0 28 15 2 0.907588178752566 0.000899955256190149 0.0429923458055901 1.8818E-06 1 7962 53.775 45.843 4 11238000 16593 13298 15518 14193 17090 14892 15734 16804 14764 4716.9 15697 12567 15704 14529 17230 14929 16054 16924 14609 4830.5 1 1 1 1 1 1 1 1 1 1 4343 781 3819 4070 4825 4825 105 1255;1256 SGSSSVAAMK 10 Acetyl (Protein N-term),Phospho (STY) _(ac)SGS(ph)SSVAAMK_ S(0.339)GS(0.566)S(0.082)S(0.012)VAAMK S(-2.22)GS(2.22)S(-8.39)S(-16.58)VAAMK 1 0 1 0 P63218 P63218 P63218 GNG5 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.297607421875 2 523.71484 1045.41513 39787.1788759339 1.2614 0.0006606 218790 114.58 218790 114.58 638.296738518223 51.654 0.66854 51.654 51.195 51.863 7.1054E-15 62 22 4 0.692651414218655 0.00248112152283171 0.0172769796364547 3.786E-05 1 11984 49.418 36.21 4 65012000 35444 31601 30723 29035 29010 36711 36144 37505 33475 5816 33522 29838 31201 30093 29639 36476 36375 37765 33143 6344.5 1 1 1 1 1 1 1 1 1 1 4344 781 3819 4071 4826 4826 1255;1256 SGSTESLNPR 10 Phospho (STY) _SGS(ph)TESLNPR_ S(0.218)GS(0.728)T(0.049)ES(0.006)LNPR S(-5.24)GS(5.24)T(-11.73)ES(-21.12)LNPR 0 0 1 0 Q96JB2 Q96JB2 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.323425292969 2 564.240067 1126.46558 37787.7033794528 1.0002 0.00056436 203070 114.58 203070 114.58 679.321398541373 34.102 0.28734 34.102 33.875 34.162 0 16 9 2 0.970547301637759 0.000398862253258758 0.0038067197922511 0.04191 1 7648 53.798 31.157 4 17997000 14499 10890 14044 11987 11558 14844 10936 13636 12085 4280.4 13718 10294 14136 12287 11869 14745 11194 13853 11875 4346.1 1 1 1 1 1 1 1 1 1 1 4345 1696 3820 4072 4827 4827 3114 SGSTESLNPRPQTTISPADLHGMWYPTVR 29 Phospho (STY) _SGS(ph)TESLNPRPQTTISPADLHGMWYPTVR_ S(0.133)GS(0.679)T(0.133)ES(0.054)LNPRPQTTISPADLHGMWYPTVR S(-7.08)GS(7.08)T(-7.08)ES(-10.96)LNPRPQT(-42.89)T(-42.89)IS(-61.6)PADLHGMWY(-141.22)PT(-149.37)VR 0 0 1 1 Q96JB2 Q96JB2 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 878.181213378906 4 820.387958 3277.52273 33259.2321463372 1.6235 0.0013319 69834 57.291 69835 57.292 877.928269260064 84.67 0.51163 84.67 84.329 84.84 -1.4211E-14 58 17 5 0.964790207718581 0.00350622115261675 0.115084630099379 9.5244E-08 1 19782 162.19 138.8 9 9311800 4754 3509 5348.4 3773.3 2981 5612 3011.7 4557 3938.3 12780 4500.7 3316.4 5322.4 3887.7 3166.2 5554 3089.6 4997 3846.6 12140 1 1 1 1 1 1 1 1 1 1 4346 1696 3821 4073 4828 4828 3114 SGSVSNYR 8 Phospho (STY) _SGS(ph)VSNYR_ S(0.222)GS(0.722)VS(0.056)NYR S(-5.11)GS(5.11)VS(-11.09)NY(-58.79)R 0 0 1 0 Q13131 Q13131 Q13131 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 589.774353027344 2 475.192389 948.370225 39995.8067562871 1.7995 0.00085512 241130 114.58 241130 114.58 589.773770798389 31.46 0.37767 31.46 31.239 31.617 0 43 12 4 0.862729185736126 0.00726075967356001 0.198952197927563 0.0089534 1 7026 87.942 58.275 4 73309000 47034 46212 48177 42314 46190 54170 43691 46683 48739 3280.9 44511 43632 48416 43875 46960 53681 44732 47215 47877 4169.8 1 1 1 1 1 1 1 1 1 1 4347 927 3822 4074 4829 4829 1527 SGSVYEPLK 9 Phospho (STY) _SGS(ph)VYEPLK_ S(0.256)GS(0.741)VY(0.003)EPLK S(-4.62)GS(4.62)VY(-24.19)EPLK 0 0 1 0 Q93100 Q93100 Q93100 PHKB Phosphorylase b kinase regulatory subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.405700683594 2 530.241547 1058.46854 35943.9232325645 1.7786 0.0009431 432190 229.16 432190 229.16 759.403956612048 64.292 0.50173 64.292 64.062 64.564 0 26 16 2 0.728129622615738 0.000723296668597367 0.00822724757055961 0.0091664 1 15100 84.309 61.392 3 11098000 27045 14927 25347 17001 15229 25620 15639 20274 15527 15598 25586 14113 25497 17468 16057 25258 15897 21013 15325 15157 1 1 1 1 1 1 1 1 1 1 4348 1637 3823 4075 4830 4830 3030 SGSYSYLEER 10 Phospho (STY) _SGS(ph)YSYLEER_ S(0.206)GS(0.782)Y(0.003)S(0.008)YLEER S(-5.79)GS(5.79)Y(-23.93)S(-19.67)Y(-37.82)LEER 0 0 1 0 O14974 O14974 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.839294433594 2 635.753008 1269.49146 35958.6752060523 1.3499 0.00085823 180230 114.58 180230 114.58 750.334337199361 55.848 2.5445 55.848 55.449 57.993 0 154 86 4 0.994893357714242 0.00178862358636472 0.0438918099072231 0.01934 2 12985 64.266 42.759 5 365630000 28329 37455 29073 38551 37198 31347 39541 48030 39728 421180 26809 35389 29336 39401 37302 32744 40142 60222 39192 397700 2 2 2 2 2 2 2 2 2 2 4349 73 3824 4076 4831;4832 4831 119 SGTNSPPPPFSDWGR 15 Phospho (STY) _SGTNS(ph)PPPPFSDWGR_ S(0.003)GT(0.014)NS(0.983)PPPPFSDWGR S(-25.49)GT(-18.42)NS(18.42)PPPPFS(-61.4)DWGR 0 0 1 0 Q9UKT5 Q9UKT5 Q9UKT5 FBXO4 F-box only protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 956.438293457031 2 841.353951 1680.69335 32231.8375592324 1.4772 0.0012429 136190 114.58 136190 114.58 956.436712943012 79.921 1.7923 79.921 79.078 80.87 0 171 61 4 0.978795182557559 0.00175728359855208 0.0270648241235402 4.0905E-07 2 18763 164.7 143.4 4 24932000 7269.2 24106 8012.4 24802 18429 7657.9 20611 18519 26414 38992 6881.3 22776 8157 25148 18123 8650.7 21034 19330 25816 37144 2 2 2 2 2 2 2 2 2 2 4350 2178 3825 4077 4833;4834 4834 3927 SGTPPRQGSITSPQANEQSVTPQR 24 2 Phospho (STY) _SGT(ph)PPRQGSIT(ph)SPQANEQSVTPQR_ S(0.044)GT(0.955)PPRQGS(0.002)IT(0.557)S(0.442)PQANEQSVTPQR S(-13.39)GT(13.39)PPRQGS(-26.34)IT(1.01)S(-1.01)PQANEQS(-58.72)VT(-67.87)PQR 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 971.789794921875 3 895.067277 2682.18 32604.0909386988 1.6598 0.0014856 85343 76.388 85345 76.389 971.789330459644 41.875 0.71072 41.875 41.455 42.165 0 66 24 4 0.961522283822896 0.00173063309527251 0.0147211171027393 1.1492E-07 1 9558 142.01 119.45 21 19418000 5773.5 6128.6 5658.1 6253.8 5179 5609.3 6002.8 5418.2 6723.6 0 5462.8 5790.2 5699.7 6403.2 5296.3 5648.9 6090.5 5442.2 6603.6 0 1 1 1 1 1 1 1 1 1 0 4351 2226 3826 4078 4835 4835 4061;4062;4827;4828;4829 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Phospho (STY) _SGT(ph)PPRQGSITSPQANEQSVT(ph)PQRR_ S(0.18)GT(0.813)PPRQGS(0.001)IT(0.001)S(0.001)PQANEQS(0.111)VT(0.893)PQRR S(-6.57)GT(6.57)PPRQGS(-32)IT(-30.67)S(-30.34)PQANEQS(-9.24)VT(9.24)PQRR 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1023.82360839844 3 947.100981 2838.28111 31875.6072776568 0.89779 0.0008503 80655 76.388 80656 76.389 1023.82323927725 35.842 0.52365 35.842 35.563 36.086 0 50 17 4 0.934365999681668 0.00120715365746344 0.0103483109908069 0.0038803 1 8063 89.833 66.854 21 13200000 3864 3387.2 4591.4 3743.1 3097.2 4556.2 4682.7 4151.3 3504.1 1097.6 3659.1 3201.8 4566.1 3834.6 3252.6 4527.6 4658.2 4212.9 3507.5 1129.6 1 1 1 1 1 1 1 1 1 1 4352 2226 3827 4079 4836 4836 4061;4062;4827;4828;4829 SGTPPRQGSITSPQANEQSVTPQRR 25 3 Phospho (STY) _SGT(ph)PPRQGSITSPQANEQS(ph)VT(ph)PQRR_ S(0.12)GT(0.559)PPRQGS(0.217)IT(0.126)S(0.297)PQANEQS(0.733)VT(0.948)PQRR S(-7.1)GT(2.67)PPRQGS(-2.67)IT(-6.86)S(-3.46)PQANEQS(3.46)VT(10.6)PQRR 0 0 3 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1050.47998046875 3 973.756424 2918.24744 30636.9797395093 0.72839 0.00070928 78447 76.389 78448 76.389 1050.47896637458 37.175 0.61046 37.175 36.66 37.27 0 79 20 5 0.985976652943835 0.00221765028507224 0.0161759632594347 0.011323 1 8333 70.062 53.125 35 30023000 4833.9 4703.3 4943.9 4354.9 2808.8 5045.7 3510.8 3959.6 4526.4 521.91 4574.5 4441 4947.1 4503.8 2987.4 5014.1 3567.8 4029.6 4423.2 583.08 1 1 1 1 1 1 1 1 1 1 4353 2226 3827 4080 4837 4837 4061;4062;4827;4828;4829 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 Phospho (STY) _S(ph)GTPTQDEMMDKPTSSSVDTMSLLSK_ S(0.378)GT(0.311)PT(0.311)QDEMMDKPTSSSVDTMSLLSK S(0.84)GT(-0.84)PT(-0.84)QDEMMDKPT(-52.45)S(-71.13)S(-71.13)S(-87.91)VDT(-127.5)MS(-149.2)LLS(-186.59)K 0 0 1 1 Q5VT52 Q5VT52 Q5VT52 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 886.435729980469 4 714.06145 2852.21669 33157.970811631 1.8968 0.0013544 240690 171.87 240700 171.87 886.18418537624 86.865 0.46558 86.865 86.619 87.085 0 51 15 5 0.855781557791664 0.00339633663995977 0.0289970079975228 4.7926E-12 2 20267 197.59 162.42 10 21142000 13692 10745 15214 10770 12762 16203 14031 14600 12188 30920 12962 10151 15204 11144 13112 16037 14171 15638 12104 29453 2 2 2 2 2 2 2 2 2 2 4354 1201 3828 4081 4838;4839 4838 2104 SGTTPKPVINSTPGR 15 Phospho (STY) _S(ph)GTTPKPVINSTPGR_ S(0.411)GT(0.294)T(0.294)PKPVINSTPGR S(1.46)GT(-1.46)T(-1.46)PKPVINS(-57.79)T(-56.91)PGR 0 0 1 1 Q99459 Q99459 Q99459 CDC5L Cell division cycle 5-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.04345703125 3 531.266172 1590.77669 38342.8975512423 2.4602 0.001307 287570 152.78 287570 152.78 684.041283068094 46.096 0.38197 46.096 45.876 46.258 -7.1054E-15 39 12 4 0.985483668248564 0.00252491198759159 0.0779969316988652 0.00015958 1 10630 102.61 71.612 5 22842000 21985 26687 20541 28883 23935 22563 18851 23158 30560 7461.2 20798 25223 20799 29421 24028 22920 19754 23430 29656 7561.6 1 1 1 1 1 1 1 1 1 1 4355 1765 3829 4082 4840 4840 3250 SGVSITIDDPVR 12 Phospho (STY) _S(ph)GVSITIDDPVR_ S(0.785)GVS(0.202)IT(0.013)IDDPVR S(5.89)GVS(-5.89)IT(-17.72)IDDPVR 0 0 1 0 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.399658203125 2 669.818682 1337.62281 35744.0850514813 1.7987 0.0012048 171060 114.58 171070 114.58 784.399848809599 72.717 0.58825 72.717 72.339 72.927 0 39 19 3 0.971087562050508 0.000753504655106088 0.0241157205493345 0.0001893 1 17060 110.92 77.053 3 11694000 18275 17353 19748 16334 19052 20433 17156 17318 18724 42712 17299 16387 19789 16900 19350 20340 17597 18779 18409 40620 1 1 1 1 1 1 1 1 1 1 4356 2180 3830 4083 4841 4841 3936 SGWESYYK 8 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)GWESYYK_ S(0.968)GWES(0.032)YYK S(14.87)GWES(-14.87)Y(-66.67)Y(-74.59)K 1 0 1 0 P12956 P12956 P12956 XRCC6 X-ray repair cross-complementing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.7978515625 2 571.21553 1140.41651 37333.1983934804 1.5952 0.00091118 200590 114.58 200590 114.58 685.797118801592 83.272 1.7832 83.272 82.823 84.607 0 181 61 6 1 0.00522322267008169 0.0378253099532719 1.4794E-05 2 19417 80.18 59.026 4 282490000 19131 13567 20648 13150 51555 19497 62609 33065 12055 16487 18109 12814 21104 13630 50602 19460 61815 33138 14039 16290 2 2 2 2 2 2 2 2 2 2 4357 372 3831 4084 4842;4843 4842 607 SHEAEVLK 8 Phospho (STY) _S(ph)HEAEVLK_ S(1)HEAEVLK S(130.98)HEAEVLK 0 0 1 0 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.890869140625 2 496.726065 991.437576 37638.2951729525 2.4045 0.0011944 461350 229.16 461350 229.16 725.889263567338 45.088 0.75504 45.088 44.596 45.351 0 71 25 5 0.760172634685272 0.00257003643247586 0.0581843774252708 0.00035239 3 10348 130.98 81.429 1 26837000 60969 90075 58413 87160 98772 63587 98164 81096 88258 26984 57683 85074 59458 89293 97833 65059 99680 81480 87504 27286 3 3 3 3 3 3 3 3 3 3 4358 411 3832 4085 4844;4845;4846 4844 664 SHEAEVLK 8 Phospho (STY) _S(ph)HEAEVLK_ S(1)HEAEVLK S(152.67)HEAEVLK 0 0 1 0 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 484.262298583984 3 331.486469 991.437576 45333.3481123679 1.1717 0.00038839 460880 152.78 460880 152.78 484.261672491078 45.095 0.58363 45.095 44.767 45.351 0 64 19 4 0.839810157287799 0.00255897893143559 0.0418871197355036 1.267E-05 1 10355 152.67 110.7 1 17211000 10354 16075 11211 15145 19840 10735 18527 16479 15160 3248.8 9801.1 15180 11342 15536 19602 11035 18830 16405 15101 3440.5 1 1 1 1 1 1 1 1 1 1 4359 411 3832 4085 4847 4847 664 SHLSESCSIESDIYAEIPDETLR 23 Phospho (STY) _SHLSESCS(ph)IESDIYAEIPDETLR_ SHLSES(0.012)CS(0.988)IESDIYAEIPDETLR S(-53.86)HLS(-37.88)ES(-19.24)CS(19.24)IES(-57.63)DIY(-119.32)AEIPDET(-194.69)LR 0 0 1 0 Q14289 Q14289 Q14289 PTK2B Protein-tyrosine kinase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 987.787658691406 3 911.065 2730.17317 30853.8092797511 1.4104 0.001285 83845 76.388 83847 76.39 987.787982395918 91.842 1.3473 91.842 91.253 92.6 0 150 46 5 0.915810866699155 0.00610521741116185 0.107429145184537 1.0067E-17 1 21385 226.18 209.68 7 32987000 1935.3 2887.1 2667.8 3794.8 4343.3 3579.6 3941.3 6660.1 3880.5 86574 1834.1 2732.5 2664 3837.6 4302.9 3799.2 4029.5 9169.8 3831.5 81674 1 1 1 1 1 1 1 1 1 1 4360 1006 3833 4086 4848 4848 1708 SHMSGSPGPGGSNTAPSTPVIGGSDKPGMEEK 32 Phospho (STY) _SHMS(ph)GSPGPGGSNTAPSTPVIGGSDKPGMEEK_ S(0.02)HMS(0.849)GS(0.13)PGPGGSNTAPSTPVIGGSDKPGMEEK S(-16.23)HMS(8.14)GS(-8.14)PGPGGS(-122.66)NT(-173.69)APS(-223.94)T(-229.78)PVIGGS(-252.69)DKPGMEEK 0 0 1 1 A0FGR8 A0FGR8 A0FGR8 ESYT2 Extended synaptotagmin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 956.219421386719 4 784.095512 3132.35294 32255.0738564797 1.866 0.0014631 219200 171.87 219200 171.87 956.469804743565 58.519 0.46541 58.519 58.291 58.756 0 59 15 5 0.975549159052782 0.00326239504542552 0.0400933709124749 1.2503E-34 2 13715 296.6 278.87 8 28345000 20346 12875 22945 11989 8518 29567 11175 21226 11879 11072 19262 12157 22783 12646 9534.1 28768 11267 21948 11691 10917 2 2 2 2 2 2 2 2 2 2 4361 1 3834 4087 4849;4850 4849 2 SHNDFVAILDLPEGEHQYK 19 Phospho (STY) _S(ph)HNDFVAILDLPEGEHQYK_ S(1)HNDFVAILDLPEGEHQYK S(161.74)HNDFVAILDLPEGEHQY(-161.74)K 0 0 1 0 O43741 O43741 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.59765625 4 573.763771 2291.02598 38590.6680878678 2.0135 0.0011553 199700 114.58 199700 114.58 688.596648336718 92.444 1.0066 92.444 92.084 93.09 -1.4211E-14 102 34 5 0.934533334297275 0.00386838313313292 0.0882686427094376 5.629E-08 1 21531 164.79 141.8 2 13229000 3575.2 5036.2 3248.7 4035.7 4135 3128.9 3968.2 3926.3 5111.3 15936 3381.8 4751.9 3300.6 4190.2 4142.6 3216.8 4078.6 4387.6 4994.9 15097 1 1 1 1 1 1 1 1 1 1 4362 125 3835 4088 4851 4851 217 SHNNFVAILDLPEGEHQYK 19 Phospho (STY) _S(ph)HNNFVAILDLPEGEHQYK_ S(1)HNNFVAILDLPEGEHQYK S(133.72)HNNFVAILDLPEGEHQY(-133.72)K 0 0 1 0 Q9Y478 Q9Y478 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 917.467712402344 3 764.354597 2290.04196 32768.6542741758 1.848 0.0014125 199880 152.78 199880 152.78 917.464676701965 88.586 1.2378 88.586 88.196 89.434 0 155 42 5 0.989790066966897 0.00483493816806539 0.100544946804096 6.4635E-11 1 20628 177.82 153.53 2 36479000 8335.8 8094.9 9352.6 7613.8 7814.8 9686.2 8287.7 9806.6 8258.7 38845 7891.6 7644.3 9341.1 7880.3 8027.9 9691.1 8412.7 11003 8150.1 36804 1 1 1 1 1 1 1 1 1 1 4363 2274 3836 4089 4852 4852 4208 SHNNFVAILDLPEGEHQYK 19 Phospho (STY) _S(ph)HNNFVAILDLPEGEHQYK_ S(1)HNNFVAILDLPEGEHQYK S(123.13)HNNFVAILDLPEGEHQY(-123.13)K 0 0 1 0 Q9Y478 Q9Y478 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.352111816406 4 573.517767 2290.04196 38202.6894631341 1.9806 0.0011359 199780 114.58 199790 114.58 688.347985062577 89.76 0.95812 89.76 89.434 90.392 -1.4211E-14 72 32 3 0.88837929006088 0.00203000074383366 0.0158794460338573 2.0961E-05 1 20913 126.27 108.78 2 11368000 3555.5 4356.9 2799 4216.8 3359.7 3647.5 3482.5 4147.5 4827.3 13390 3361.6 4115 2869 4329.1 3379.3 3713 3575.8 4544.4 4706 12705 1 1 1 1 1 1 1 1 1 1 4364 2274 3836 4089 4853 4853 4208 SHSAEGGK 8 Phospho (STY) _SHS(ph)AEGGK_ S(0.186)HS(0.814)AEGGK S(-6.41)HS(6.41)AEGGK 0 0 1 0 P21127 P21127 P21127 CDK11B Cyclin-dependent kinase 11B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.829162597656 2 426.666007 851.317461 39066.3388059192 2.7453 0.0011713 537100 229.16 537100 229.16 655.828956270974 23.137 0.31653 23.137 23.007 23.324 0 18 10 2 0.976468975671928 0.00213719092203183 0.0976897850621872 0.0058655 1 5193 93.556 69.401 2 3148300 3393.6 3776.7 3131.8 4504.9 3248.2 3132.5 4279.2 4135.1 4275.9 1401.8 3210.3 3571.8 3171.9 4558.9 3304 3216.3 4306.2 4151.2 4219.2 1415.6 1 1 1 1 1 1 1 1 1 1 4365 449 3837 4090 4854 4854 731 SHSDNDRFK 9 Phospho (STY) _S(ph)HSDNDRFK_ S(0.994)HS(0.006)DNDRFK S(21.97)HS(-21.97)DNDRFK 0 0 1 1 O75494 O75494 O75494 SRSF10 Serine/arginine-rich splicing factor 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.603271484375 3 395.827665 1184.46117 41478.1130330922 1.8197 0.00072027 385960 152.78 385970 152.78 548.602760956498 30.704 0.80686 30.704 30.523 31.33 -3.5527E-15 51 26 3 0.855810717003316 0.00207875628994864 0.0664543107906212 0.0003098 1 6871 110.31 80.958 2 14414000 11500 10913 10892 13424 13183 12977 11595 12652 12400 3146.1 10880 10323 11027 13623 13221 13030 11901 12798 12201 3255.2 1 1 1 1 1 1 1 1 1 1 4366 189 3838 4091 4855 4855 331 SHSPERK 7 Phospho (STY) _SHS(ph)PERK_ S(0.001)HS(0.999)PERK S(-33)HS(33)PERK 0 0 1 1 Q9P1Y6 Q9P1Y6 Q9P1Y6 PHRF1 PHD and RING finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 460.246612548828 3 307.471041 919.391295 46600.8544338039 0.993 0.00030532 496880 152.78 496880 152.78 460.246461227862 21.467 0.60336 21.467 21.253 21.857 -3.5527E-15 49 20 4 0.987392537891505 0.0189958469571033 0.134115448049762 0.0068893 1 4851 88.37 66.133 2 10195000 10864 10566 11161 9712.4 5077.2 10280 5927.9 9513.7 11036 3677.3 10281 9976.6 11148 10034 5528.5 10276 6133.2 9683.4 10672 3682.8 1 1 1 1 1 1 1 1 1 1 4367 2096 3839 4092 4856 4856 3788 SHSYDRR 7 Phospho (STY) _SHS(ph)YDRR_ S(0.001)HS(0.999)YDRR S(-31)HS(31)Y(-35.34)DRR 0 0 1 1 Q96IZ7 Q96IZ7 Q96IZ7 RSRC1 Serine/Arginine-related protein 53 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 410.526123046875 3 334.138062 999.392357 49571.1654496998 0.4692 0.00015678 228610 76.388 228610 76.388 410.525886794372 19.331 0.73345 19.331 19.103 19.837 0 66 27 4 0.984761090570486 0.0136680197002216 0.182253093019268 0.035192 1 4411 50.834 31.563 3 2000800 2855 2128.1 2280.5 1980 1869.4 3199.7 1640.2 1880.8 2396.3 9934.5 2699.4 2009.5 2323.9 2061.6 1918.8 3155 1701.3 2237 2332.4 9398.1 1 1 1 1 1 1 1 1 1 1 4368 1694 3840 4093 4857 4857 3112 SIDGTADDEDEGVPTDQAIR 20 Unmodified _SIDGTADDEDEGVPTDQAIR_ 0 0 0 0 Q9NTI5 Q9NTI5 Q9NTI5 PDS5B Sister chromatid cohesion protein PDS5 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.370910644531 3 701.981943 2102.924 36487.306778537 1.2465 0.00087501 108820 76.388 108820 76.389 778.369963035507 55.369 0.37528 55.369 55.191 55.566 0 29 12 3 0.884293582069368 0.00107213475345162 0.0180280270875458 7.3654E-08 1 12929 160.97 141.13 1 9649400 9265.3 8580.4 8824.1 9326.1 7821.5 7971.6 8341.1 9716.2 9742.3 11736 8765.7 8109.9 8899.4 9508.5 8005.1 8094.8 8503.9 10032 9553.3 11276 1 1 1 1 1 1 1 1 1 1 4369 2031 3841 4094 4858 4858 SIEVENDFLPVEK 13 Phospho (STY) _S(ph)IEVENDFLPVEK_ S(1)IEVENDFLPVEK S(156.49)IEVENDFLPVEK 0 0 1 0 Q96B97 Q96B97 Q96B97 SH3KBP1 SH3 domain-containing kinase-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1029.53845214844 2 799.871111 1597.72767 32544.8363561285 1.4134 0.0011305 286500 229.16 286500 229.16 1029.53520013783 95.143 0.737 95.143 94.857 95.594 -1.4211E-14 47 25 3 0.53784823540096 0.00043738206672311 0.0114341293788157 5.7044E-07 2 22118 156.49 114.95 1 15155000 31390 5254.8 35606 6643.2 11238 36156 9816.9 21189 6591 97603 29719 4972 35310 7210.5 12820 34920 9972.7 24775 6640.1 92395 2 2 2 2 2 2 2 2 2 2 4370 1655 3842 4095 4859;4860 4860 3052 SIGASPNPFSVHTATAVPSGK 21 Phospho (STY) _S(ph)IGASPNPFSVHTATAVPSGK_ S(0.97)IGAS(0.03)PNPFSVHTATAVPSGK S(15.06)IGAS(-15.06)PNPFS(-54.19)VHT(-90.13)AT(-118.96)AVPS(-150.89)GK 0 0 1 0 P09884 P09884 P09884 POLA1 DNA polymerase alpha catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.116394042969 3 702.340288 2103.99903 34094.5762323478 1.6455 0.0011557 217520 152.77 217520 152.78 855.114367099294 73.601 0.28428 73.601 73.443 73.728 0 19 9 3 0.953823723791939 0.000790629364350052 0.0194814704228509 5.6794E-08 1 17294 158.33 135.9 6 9915300 9545.2 9376.4 10451 9633.1 10548 13357 11004 15295 12157 20700 9035.6 8859 10473 9935.1 10706 13286 11211 15890 11947 19846 1 1 1 1 1 1 1 1 1 1 4371 344 3843 4096 4861 4861 564 SIKPSDSPR 9 Phospho (STY) _SIKPSDS(ph)PR_ S(0.001)IKPS(0.03)DS(0.969)PR S(-28.26)IKPS(-15.1)DS(15.1)PR 0 0 1 1 Q92610 Q92610 Q92610 ZNF592 Zinc finger protein 592 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 508.945617675781 3 356.169139 1065.48559 43567.5249660576 1.4054 0.00050057 428940 152.78 428940 152.78 508.945080175733 38.004 0.69683 38.004 37.686 38.383 0 60 23 4 0.833958446891918 0.00364407198146621 0.04043106837096 0.011721 1 8605 63.76 30.57 3 27874000 28297 28951 30403 30219 28747 30717 30286 30250 33351 3462.9 26784 27356 30476 30958 29295 30768 30839 30465 32777 3960.8 1 1 1 1 1 1 1 1 1 1 4372 1607 3844 4097 4862 4862 2958 SILDDSFK 8 Phospho (STY) _S(ph)ILDDSFK_ S(0.98)ILDDS(0.02)FK S(16.96)ILDDS(-16.96)FK 0 0 1 0 Q9BQS7 Q9BQS7 Q9BQS7 HEPH Hephaestin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.883666992188 2 502.720448 1003.42634 36387.7259505877 2.0969 0.0010542 455850 229.16 455850 229.16 731.88351532778 82.96 1.5585 82.96 82.398 83.956 0 140 53 4 0.891864027312574 0.00242068465869647 0.0453427120846152 0.0011483 2 19363 111.73 35.269 2 88680000 11774 40811 12052 40575 49421 11428 49823 35792 42259 22856 11142 38551 12578 41207 47945 13104 50489 35646 42018 22350 2 2 2 2 2 2 2 2 2 2 4373 1808 3845 4098 4863;4864 4863 3319 SILPYPVSPK 10 Phospho (STY) _SILPYPVS(ph)PK_ SILPY(0.017)PVS(0.983)PK S(-47.38)ILPY(-17.66)PVS(17.66)PK 0 0 1 0 Q8IWI9 Q8IWI9 Q8IWI9 MGA MAX gene-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 820.470581054688 2 590.804315 1179.59408 35104.8494210881 1.9515 0.001153 387880 229.16 387890 229.16 819.967419525317 86.447 0.77575 86.447 86.102 86.878 1.4211E-14 82 26 4 0.846746688261119 0.00189108866311539 0.0960981048594392 0.0084361 1 20129 85.672 28.083 3 35324000 11668 11927 12048 13188 8787.2 14598 9579.3 13196 13950 21826 11042 11274 12071 13486 9125.1 14593 9832.6 13948 13579 20857 1 1 1 1 1 1 1 1 1 1 4374 1416 3846 4099 4865 4865 2580 SILQEENRRDSWSYINSK 18 Phospho (STY) _SILQEENRRDS(ph)WSYINSK_ SILQEENRRDS(0.997)WS(0.003)YINSK S(-52.73)ILQEENRRDS(24.7)WS(-24.7)Y(-85.88)INS(-115.53)K 0 0 1 2 P13612 P13612 P13612 ITGA4 Integrin alpha-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.853271484375 4 577.020674 2304.05359 38084.7913694302 1.7086 0.00098591 198570 114.58 198580 114.58 691.853151362827 70.039 0.69259 70.039 69.669 70.361 0 88 23 6 0.917151164747133 0.00447879033493499 0.0348527067387282 1.6047E-07 1 16432 152.66 128.2 5 19434000 5879 4049.8 6395.1 3775.9 13336 6084.9 14051 7961.6 4484.5 41256 5565 3824.2 6496.2 3930.8 13124 6097.3 14006 9156.4 4830.6 39031 1 1 1 1 1 1 1 1 1 1 4375 377 3847 4100 4866 4866 614 SILSPGGSCGPIK 13 Phospho (STY) _SILS(ph)PGGSCGPIK_ S(0.007)ILS(0.976)PGGS(0.017)CGPIK S(-21.24)ILS(17.61)PGGS(-17.61)CGPIK 0 0 1 0 P78347 P78347 P78347 GTF2I General transcription factor II-I MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 604.323486328125 3 451.547511 1351.6207 40372.9936955962 1.2565 0.00056736 338340 152.78 338340 152.78 604.32304173451 75.809 0.75444 75.809 75.431 76.185 0 88 25 5 0.991062039826998 0.00319377099159708 0.0444910526055073 3.2657E-07 1 17756 157.33 128.36 3 41512000 6835.4 7946.1 7879.2 7499.8 6142.6 6671.4 6981.7 7570.6 8138 8541.1 6472 7503.9 7854.2 7714.4 6349.1 6751.4 7098.1 7816.4 7980.7 8217.7 1 1 1 1 1 1 1 1 1 1 4376 798 3848 4101 4867 4867 1276 SILVSPTGPSR 11 Phospho (STY) _SILVS(ph)PTGPSR_ SILVS(0.998)PT(0.002)GPSR S(-46.77)ILVS(27.11)PT(-27.11)GPS(-79.34)R 0 0 1 0 Q14684 Q14684 Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 711.880493164063 2 597.299928 1192.5853 37133.5073500105 1.7897 0.001069 191830 114.58 191830 114.58 711.880817131851 60.921 0.70479 60.921 60.656 61.36 -7.1054E-15 51 17 4 0.902480909124366 0.00328004287214814 0.108854552848141 1.1896E-06 1 14277 144.51 105.48 4 30378000 23075 25570 23132 25298 31540 22994 26513 26171 28610 8229 21835 24153 23383 25955 31442 23206 27286 26377 28141 8354.3 1 1 1 1 1 1 1 1 1 1 4377 1020 3849 4102 4868 4868 1741 SIMVQSPEK 9 Phospho (STY) _SIMVQS(ph)PEK_ SIMVQS(1)PEK S(-56.74)IMVQS(56.74)PEK 0 0 1 0 Q14191 Q14191 Q14191 WRN Werner syndrome ATP-dependent helicase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.912414550781 2 549.748682 1097.48281 34717.4161696018 1.6522 0.00090831 416850 229.16 416850 229.16 778.911972823875 59.704 0.65118 59.704 59.456 60.107 0 49 22 3 0.979282262199149 0.00135921844830276 0.0181331056534628 0.0001138 1 13990 132.9 73.704 2 25269000 22379 32399 22248 33467 22976 22516 24234 26697 37631 11971 21176 30612 22421 34122 23304 23133 24974 26977 36563 11890 1 1 1 1 1 1 1 1 1 1 4378 999 3850 4103 4869 4869 1699 SINKLDSPDPFK 12 Phospho (STY) _SINKLDS(ph)PDPFK_ S(0.003)INKLDS(0.997)PDPFK S(-25.93)INKLDS(25.93)PDPFK 0 0 1 1 P42566 P42566 P42566 EPS15 Epidermal growth factor receptor substrate 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.061340332031 3 480.897197 1439.66976 37081.7041541452 1.94 0.00093292 476530 229.16 476530 229.16 710.059954969691 76.148 0.72595 76.148 75.832 76.558 0 60 24 3 0.704774297992118 0.00212524342984036 0.0489082226080678 0.0072925 1 17869 79.326 54.272 2 8501300 9296.8 8629.4 8763.4 7451.8 23391 9201.8 22669 12635 8630.4 8170.5 8795.2 8145.2 9032.7 7751.3 22850 9203.7 22726 12787 9111.1 7986 1 1 1 1 1 1 1 1 1 1 4379 587 3851 4104 4870 4870 950;951 SINKLDSPDPFK 12 Phospho (STY) _S(ph)INKLDSPDPFK_ S(1)INKLDSPDPFK S(77.6)INKLDS(-77.6)PDPFK 0 0 1 1 P42566 P42566 P42566 EPS15 Epidermal growth factor receptor substrate 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.396240234375 3 480.897197 1439.66976 37344.3194604609 2.3604 0.0011351 476530 229.16 476540 229.16 710.060726659797 78.363 0.5445 78.363 78.119 78.664 0 55 18 4 0.956831431049433 0.00585299750320035 0.131777089722972 7.8893E-11 1 18361 176.04 122.85 2 20283000 9323.9 22281 9324.6 20598 14754 10934 15054 15408 24910 8599.4 8822.8 21039 9456.4 21097 14666 11463 15579 15541 24161 8453.9 1 1 1 1 1 1 1 1 1 1 4380 587 3851 4104 4871 4871 950;951 SINQPVAFVR 10 Phospho (STY) _S(ph)INQPVAFVR_ S(1)INQPVAFVR S(89.44)INQPVAFVR 0 0 1 0 Q9GZT3 Q9GZT3 Q9GZT3 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 720.387329101563 2 605.802638 1209.59072 36132.1994493206 1.9666 0.0011914 189140 114.58 189140 114.58 720.385534362692 70.969 0.54694 70.969 70.825 71.372 0 30 18 3 0.930575280746957 0.000953528265484714 0.0101610959417596 0.0065168 1 16664 89.44 59.631 1 12684000 10881 10955 9671.5 13087 15531 10015 16687 12098 13289 52240 10292 10361 9882.1 13258 15428 10300 16837 13629 13256 49471 1 1 1 1 1 1 1 1 1 1 4381 1892 3852 4105 4872 4872 3446 SIPLECPLSSPK 12 Phospho (STY) _SIPLECPLSS(ph)PK_ SIPLECPLS(0.263)S(0.737)PK S(-125.09)IPLECPLS(-4.48)S(4.48)PK 0 0 1 0 Q92667 Q92667 Q92667 AKAP1 A-kinase anchor protein 1, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.668518066406 3 469.891166 1406.65167 39837.5402855487 2.1513 0.0010109 325130 152.78 325130 152.78 622.66735575645 79.43 0.5686 79.43 79.164 79.732 0 57 19 4 0.97235303118331 0.00355369698264903 0.14164880707053 2.6879E-07 1 18606 151.07 133.99 3 17536000 4667.9 7774.4 6118 7263.8 6378.4 5598.5 6825.5 7310.8 7617.5 4526.4 4422.5 7341.3 6081.2 7462.7 6464.5 5716 6948 7403.2 7482.6 4431.3 1 1 1 1 1 1 1 1 1 1 4382 1614 3853 4106 4873 4873 2979 SIPLSIK 7 Phospho (STY) _S(ph)IPLSIK_ S(1)IPLSIK S(42.74)IPLS(-42.74)IK 0 0 1 0 Q9C0C9 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.391235351563 2 419.227712 836.440871 40012.1413911015 1.6117 0.00067569 546630 229.16 546630 229.16 648.39051967267 80.042 0.45952 80.042 79.761 80.22 0 39 15 4 0.934275725806875 0.00141052212562953 0.0235979930233082 0.021318 1 18751 68.846 8.0177 2 9237400 9375 11470 10882 9942.7 22645 10445 20268 14219 9417.9 16938 8876.8 10826 11010 10310 22242 10526 20448 14626 9752.8 16278 1 1 1 1 1 1 1 1 1 1 4383 1886 3854 4107 4874 4874 3439 SIQDLTVTGTEPGQVSSR 18 Phospho (STY) _S(ph)IQDLTVTGTEPGQVSSR_ S(1)IQDLTVTGTEPGQVSSR S(57)IQDLT(-57)VT(-100.46)GT(-121.5)EPGQVS(-192.67)S(-190.35)R 0 0 1 0 O43318 O43318 O43318 MAP3K7 Mitogen-activated protein kinase kinase kinase 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1093.04309082031 2 977.959509 1953.90447 30228.0573583908 2.3727 0.0023204 117160 114.58 117170 114.58 1093.04265005368 68.307 0.66576 68.307 68.066 68.732 0 54 22 3 0.95380355172408 0.00178081738151764 0.141922154086081 1.4174E-22 1 16019 264.96 232.22 6 20249000 4981.2 7089.8 5265.4 6541 5554.3 6187.9 5809.6 6188 7282.6 15035 4714.5 6694.4 5289.6 6743.9 5624.4 6246.5 5941.7 6660.1 7123.3 14301 1 1 1 1 1 1 1 1 1 1 4384 106 3855 4108 4875 4875 177 SIQEIQELDKDDESLR 16 Unmodified _SIQEIQELDKDDESLR_ 0 0 0 1 P52565 P52565 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.762634277344 3 639.984848 1916.93271 35614.0159450009 2.1531 0.0013779 238720 152.77 238720 152.78 793.09394515886 72.609 0.43964 72.609 72.369 72.809 0 48 14 4 0.799238393082842 0.00181081014113104 0.0408006815838928 3.2333E-10 1 17022 182.76 150.96 1 30304000 19005 20481 20959 17886 21326 19689 23131 20560 21890 17299 17991 19333 21000 18552 21644 19698 23425 21110 21652 16765 1 1 1 1 1 1 1 1 1 1 4385 691 3856 4109 4876 4876 SIQFVDWCPTGFK 13 Phospho (STY) _S(ph)IQFVDWCPTGFK_ S(1)IQFVDWCPTGFK S(83.88)IQFVDWCPT(-83.88)GFK 0 0 1 0 P68363;P68366 P68363 P68363 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 708.352111816406 3 555.57747 1663.71058 35994.6008173816 1.9042 0.0010579 274980 152.78 274990 152.78 708.687007876612 100.66 0.19421 100.66 100.56 100.76 0 21 6 6 0.99045492654195 0.00726242709574826 0.138393704540704 7.599E-05 1 23567 122.14 95.99 2 170320000 19839 32728 17643 32982 45737 18846 44125 30417 35580 14392 18765 30918 18232 33622 44725 19693 44759 30496 35469 14256 1 1 1 1 1 1 1 1 1 1 4386 789 3857 4110 4877 4877 1261 SIQPQVSPR 9 Phospho (STY) _SIQPQVS(ph)PR_ SIQPQVS(1)PR S(-85.51)IQPQVS(85.51)PR 0 0 1 0 Q13322 Q13322 Q13322 GRB10 Growth factor receptor-bound protein 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.850341796875 2 546.265888 1090.51722 38330.0278152538 2.0019 0.0010935 209750 114.58 209760 114.58 660.847853085193 42.564 0.60094 42.564 42.194 42.795 0 54 20 4 0.993696269056409 0.00211097330948134 0.0515407483979107 0.00051754 1 9708 110.64 36.856 2 37474000 18880 26786 18573 24856 21311 20473 20448 22736 29051 7314.8 17864 25293 18752 25569 21461 20759 21091 22939 28299 7414 1 1 1 1 1 1 1 1 1 1 4387 945 3858 4111 4878 4878 1571 SIRDTPAK 8 Phospho (STY) _SIRDT(ph)PAK_ S(0.007)IRDT(0.993)PAK S(-21.8)IRDT(21.8)PAK 0 0 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 475.934265136719 3 323.158463 966.453561 45533.5107276695 0.40377 0.00013048 472760 152.78 472760 152.78 475.934024255024 35.518 0.78807 35.518 35.092 35.88 0 80 26 4 0.845358382885258 0.0371374248816373 1 0.025831 1 7967 73.655 28.518 2 322500000 251230 128980 270540 145170 67099 250080 82128 154110 150310 0 237800 121940 268850 149760 80381 244780 84744 158300 145410 3511.5 1 1 1 1 1 1 1 1 1 0 4388 315 3859 4112 4879 4879 4378 SIRLPETIDLGALYLSMK 18 Phospho (STY) _S(ph)IRLPETIDLGALYLSMK_ S(1)IRLPETIDLGALYLSMK S(57.39)IRLPET(-57.39)IDLGALY(-153.26)LS(-148.48)MK 0 0 1 1 P08567 P08567 P08567 PLEK Pleckstrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.80810546875 3 700.698536 2099.07378 34298.5774456715 1.2022 0.00084237 218030 152.77 218030 152.78 853.807684115379 101.72 0.25421 101.72 101.64 101.9 0 27 8 5 0.955658153721652 0.00708928602795842 0.2153156402851 1.6208E-11 1 23941 206.47 181.87 4 88329000 55140 7530.8 63822 7428.6 135440 55730 177420 87179 5495.5 91078 52210 7113.5 64722 8409.8 133650 54271 173880 88972 12714 87778 1 1 1 1 1 1 1 1 1 1 4389 333 3860 4113 4880 4880 544 SISADDDLQESSR 13 Phospho (STY) _SIS(ph)ADDDLQESSR_ S(0.083)IS(0.917)ADDDLQESSR S(-10.43)IS(10.43)ADDDLQES(-75.64)S(-88.17)R 0 0 1 0 P18615 P18615 P18615 NELFE Negative elongation factor E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.890991210938 2 751.803957 1501.59336 33066.5289924941 1.3355 0.001004 152410 114.58 152410 114.58 866.888611902316 47.816 2.6588 47.816 47.412 50.07 0 255 91 5 0.933668274106878 0.00348559219757124 0.103809696119857 0.00012732 4 11058 122.1 106.45 4 112040000 87132 91785 93560 95751 85397 89756 86995 95282 102730 48974 82473 86729 93743 97976 87180 90396 88907 96837 100690 48320 4 4 4 4 4 4 4 4 4 4 4390 429 3861 4114 4881;4882;4883;4884 4882 696 SISASKASPPGDLQNPK 17 Phospho (STY) _SISASKAS(ph)PPGDLQNPK_ SISAS(0.009)KAS(0.991)PPGDLQNPK S(-84.55)IS(-54.02)AS(-20.42)KAS(20.42)PPGDLQNPK 0 0 1 1 O00273 O00273 O00273 DFFA DNA fragmentation factor subunit alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.120422363281 3 592.955774 1775.84549 34638.5884362505 2.4168 0.0014331 386480 229.16 386480 229.16 822.453139316784 56.428 0.71234 56.428 55.981 56.693 0 56 23 3 0.91163652121479 0.00223313081120435 0.0505870379963754 8.207E-11 1 13184 187.86 159.21 4 17283000 15698 20154 14768 20612 15984 16545 20981 19623 22840 9854.8 14851 19041 14948 21071 16221 16823 21168 19861 22458 9733.6 1 1 1 1 1 1 1 1 1 1 4391 40 3862 4115 4885 4885 63 SISCEEATCSDTSESILEEEPQENQKK 27 Phospho (STY) _SIS(ph)CEEATCSDTSESILEEEPQENQKK_ S(0.129)IS(0.871)CEEATCSDTSESILEEEPQENQKK S(-8.3)IS(8.3)CEEAT(-81.95)CS(-154.4)DT(-202.34)S(-219.87)ES(-232.8)ILEEEPQENQKK 0 0 1 1 O94763 O94763 O94763 URI1 Unconventional prefoldin RPB5 interactor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 975.210510253906 4 802.834992 3207.31086 31018.5586146105 1.6523 0.0013265 214080 171.87 214080 171.87 975.208654918626 67.682 0.47028 67.682 67.416 67.887 0 60 15 5 0.988665087940281 0.00592000936243247 0.132184532755301 1.118E-34 1 15871 324.4 311.92 7 39038000 4473.9 4100.7 4032.9 4039.9 3281.5 4803.9 4073.3 6029.5 5001.8 72045 4231.8 3873.5 4078.5 4164.1 3386.5 4932.2 4133.7 8171.4 4895.9 67978 1 1 1 1 1 1 1 1 1 1 4392 215 3863 4116 4886 4886 374 SISISVARGGGR 12 Phospho (STY) _SIS(ph)ISVARGGGR_ S(0.056)IS(0.897)IS(0.048)VARGGGR S(-12.07)IS(12.07)IS(-12.75)VARGGGR 0 0 1 1 CON__P04264;P04264 CON__P04264 CON__P04264 KRT1 Keratin, type II cytoskeletal 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.895446777344 2 620.313901 1238.61325 36466.4291238659 1.7131 0.0010627 184710 114.58 184720 114.58 734.894712249204 54.183 0.58593 54.183 53.829 54.415 0 57 19 4 0.844287013901437 0.00515649490601797 0.166458074236678 0.021887 1 12623 62.528 31.731 3 52198000 151550 14876 140490 15476 9554.1 149740 13060 57505 16610 9981.8 143370 14056 140500 18011 17479 142960 13223 61556 16238 10730 1 1 1 1 1 1 1 1 1 1 + 4393 23 3864 4117 4887 4887 38 SISLGDSEGPIVATLAQPLR 20 Phospho (STY) _SIS(ph)LGDSEGPIVATLAQPLR_ S(0.129)IS(0.871)LGDSEGPIVATLAQPLR S(-8.3)IS(8.3)LGDS(-42.81)EGPIVAT(-143.88)LAQPLR 0 0 1 0 O43379 O43379 O43379 WDR62 WD repeat-containing protein 62 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1167.115234375 2 1052.53793 2103.0613 29498.8776834736 1.4183 0.0014928 108860 114.58 108860 114.58 1167.62108451352 100.87 0.25823 100.87 100.78 101.04 0 24 8 4 0.842004925509447 0.00215605972830532 0.0888397145568853 3.5365E-81 1 23640 444.75 398.43 4 59362000 5420.1 11358 7308 11901 7988.8 7692.5 9091.1 12657 12446 179510 5135.9 10732 7260.6 12119 8085.7 8298.7 9292.9 17912 12138 169320 1 1 1 1 1 1 1 1 1 1 4394 108 3865 4118 4888 4888 184 SISLSQSAENVPASK 15 Phospho (STY) _SIS(ph)LSQSAENVPASK_ S(0.125)IS(0.566)LS(0.309)QSAENVPASK S(-6.58)IS(2.63)LS(-2.63)QS(-46.61)AENVPAS(-148.29)K 0 0 1 0 Q4ADV7 Q4ADV7 Q4ADV7 RIC1 RAB6A-GEF complex partner protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.362121582031 3 533.25382 1596.73963 38408.9322072595 1.5865 0.00084601 286500 152.78 286500 152.78 686.029979871538 64.689 0.40253 64.689 64.477 64.879 0 33 13 4 0.978737811300709 0.000933530303469438 0.0112027943805039 8.4336E-08 1 15221 172.12 139.97 5 7244600 7918.2 7048.7 7683.7 7325 8660.6 7903.6 7701.6 7985.1 6307.6 8509 7491.8 6660.2 7760.6 7513.5 8716.3 7913.4 7847.5 8262.9 6282.8 8197 1 1 1 1 1 1 1 1 1 1 4395 1136 3866 4119 4889 4889 1978 SISLTRPGSSSLSSGPNSILCR 22 Phospho (STY) _SIS(ph)LTRPGSSSLSSGPNSILCR_ S(0.02)IS(0.979)LT(0.001)RPGSSSLSSGPNSILCR S(-16.97)IS(16.97)LT(-29.46)RPGS(-54)S(-57.46)S(-66.95)LS(-77.85)S(-87.68)GPNS(-90.92)ILCR 0 0 1 1 Q9HB19 Q9HB19 Q9HB19 PLEKHA2 Pleckstrin homology domain-containing family A member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.772827148438 3 786.049068 2355.12537 33887.5273360625 1.5005 0.0011795 97179 76.387 97180 76.388 862.771349802309 75.625 0.69323 75.625 75.341 76.035 0 97 23 6 0.873405787177105 0.00666299465370994 0.214909543387424 4.7879E-05 1 17721 112.62 94.52 9 67497000 8218 8783.4 7748 9945.4 14807 9354 20151 14179 9146.1 15875 7774.5 8304 7925.4 10131 14675 9492.8 19954 14514 9491.2 15276 1 1 1 1 1 1 1 1 1 1 4396 1976 3867 4120 4890 4890 3594 SISNPPGSNLR 11 Phospho (STY) _SIS(ph)NPPGSNLR_ S(0.045)IS(0.955)NPPGSNLR S(-13.28)IS(13.28)NPPGS(-44.04)NLR 0 0 1 0 Q9H4A3 Q9H4A3 Q9H4A3 WNK1 Serine/threonine-protein kinase WNK1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.866760253906 2 611.284809 1220.55507 36979.0045886036 1.1444 0.00069953 187440 114.58 187440 114.58 725.866072199826 48.208 0.79124 48.208 47.803 48.594 0 56 26 3 0.818758641903426 0.00142535555753631 0.0426299806539618 0.00025765 1 11236 106.03 71.943 3 22445000 33506 21940 31991 21087 16192 33585 17973 21686 22391 11703 31699 20721 32110 21905 17394 32979 18330 22567 21906 11522 1 1 1 1 1 1 1 1 1 1 4397 1936 3868 4121 4891 4891 3507 SISPSALQDLLR 12 Phospho (STY) _SIS(ph)PSALQDLLR_ S(0.297)IS(0.7)PS(0.003)ALQDLLR S(-3.72)IS(3.72)PS(-23.34)ALQDLLR 0 0 1 0 Q92793 Q92793 Q92793 CREBBP CREB-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 804.932556152344 2 690.350149 1378.68575 34498.8777266509 1.7506 0.0012085 165980 114.58 165980 114.58 804.931762630695 100.86 0.16982 100.86 100.76 100.93 0 15 5 4 0.853326460994943 0.00954092719754172 0.527511075294052 5.268E-16 1 23635 227.3 159.3 3 115480000 40220 42071 36838 35115 125180 38418 120970 66284 39743 44923 38046 39704 38362 36533 121680 38794 121110 66762 42659 43835 1 1 1 1 1 1 1 1 1 1 4398 1620 3869 4122 4892 4892 2995 SISSPNVNR 9 Phospho (STY) _SIS(ph)SPNVNR_ S(0.049)IS(0.723)S(0.228)PNVNR S(-11.65)IS(5.02)S(-5.02)PNVNR 0 0 1 0 Q9NQT8 Q9NQT8 Q9NQT8 KIF13B Kinesin-like protein KIF13B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.823425292969 2 527.23987 1052.46519 38585.2644000781 2.2186 0.0011697 217330 114.58 217330 114.58 641.822377642414 38.474 0.60514 38.474 38.063 38.668 0 35 18 3 0.732458058371347 0.00101790030453912 0.0299528513451504 0.010878 1 8726 80.871 52.294 3 15004000 18889 26121 17859 25935 32762 20117 31165 26996 27858 4825.2 17870 24674 18222 26547 32341 20519 31710 26957 27628 5168.3 1 1 1 1 1 1 1 1 1 1 4399 2009 3870 4123 4893 4893 3647 SISSPSVSSETMDKPVDLSTR 21 Oxidation (M),Phospho (STY) _SISS(ph)PSVSSETM(ox)DKPVDLSTR_ SISSPSVSSETM(1)DKPVDLSTR SIS(0.429)S(0.566)PS(0.004)VSSETMDKPVDLSTR SISSPSVSSETM(195.01)DKPVDLSTR S(-31.69)IS(-1.2)S(1.2)PS(-21.14)VS(-46.84)S(-52.78)ET(-60.86)MDKPVDLS(-140.02)T(-150.32)R 0 1 1 1 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 926.801391601563 3 773.685572 2318.03489 32068.07977591 1.5248 0.0011797 197470 152.78 197470 152.78 926.795926837405 62.27 0.51674 62.27 62.007 62.523 0 70 17 5 0.986932901660247 0.00455258590945336 0.0849863400174193 2.5316E-11 1 14597 195.01 180.15 9 74040000 12068 22400 12656 20029 10584 13106 10767 16996 23983 19030 11421 21147 12685 20599 10878 13530 11313 17471 23104 18312 1 1 1 1 1 1 1 1 1 1 4400 655 3871 4124 4894 4894 84 1100;1101 SISSPSVSSETMDKPVDLSTR 21 Phospho (STY) _SISS(ph)PSVSSETMDKPVDLSTR_ SIS(0.004)S(0.845)PS(0.151)VSSETMDKPVDLSTR S(-60.42)IS(-23.35)S(7.49)PS(-7.49)VS(-42.71)S(-48.72)ET(-60.61)MDKPVDLS(-137.73)T(-142.3)R 0 0 1 1 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.467468261719 3 768.353934 2302.03997 33117.9300241772 2.6681 0.00205 198830 152.77 198840 152.78 921.462929447721 68.442 0.36977 68.442 68.214 68.584 0 40 12 4 0.979274788983794 0.00301425353816056 0.0341737511268508 2.1156E-11 1 16071 185.96 169.55 9 15421000 6814.1 15836 7992.4 15575 8156.9 8619.5 8109.1 11420 18120 25928 6452.3 14958 7982.1 15896 8276.7 9034.1 8530.8 12128 17454 24679 1 1 1 1 1 1 1 1 1 1 4401 655 3871 4125 4895 4895 1100;1101 SISSPSVSSETMDKPVDLSTR 21 Phospho (STY) _SISS(ph)PSVSSETMDKPVDLSTR_ SIS(0.047)S(0.953)PSVSSETMDKPVDLSTR S(-64.17)IS(-13.12)S(13.12)PS(-33.02)VS(-109.59)S(-132.9)ET(-168.12)MDKPVDLS(-292.47)T(-320.98)R 0 0 1 1 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 921.465270996094 3 768.353934 2302.03997 32487.4440719056 2.0726 0.0015925 198830 152.78 198840 152.78 921.463564236823 69.22 0.634 69.22 68.912 69.546 0 93 21 6 0.998181375074009 0.0364072935920754 0.481542767694492 1.6396E-81 1 16251 444.3 416.36 9 184790000 47168 124620 48565 135550 44195 57080 41737 88611 149230 37788 44638 117780 48764 137250 45174 61183 45546 88800 142680 37632 1 1 1 1 1 1 1 1 1 1 4402 655 3871 4125 4896 4896 1100;1101 SISSPSVSSETMDKPVDLSTRK 22 Phospho (STY) _SIS(ph)SPSVSSETMDKPVDLSTRK_ S(0.099)IS(0.524)S(0.158)PS(0.142)VS(0.032)S(0.036)ET(0.009)MDKPVDLSTRK S(-7.26)IS(5.21)S(-5.21)PS(-5.67)VS(-12.21)S(-11.58)ET(-17.76)MDKPVDLS(-31.28)T(-31.28)RK 0 0 1 2 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.916381835938 4 608.54101 2430.13494 34919.4739032103 1.7616 0.001072 282430 171.87 282440 171.87 780.665452499946 66.743 0.74584 66.743 66.403 67.149 0 68 25 5 0.952670118107963 0.0046240423302197 0.149389029161138 0.045426 1 15687 44.6 27.378 9 29203000 10766 15426 11369 15909 9461.5 14414 10647 13659 19171 14575 10189 14575 11392 16281 9739 14533 11014 14169 18555 14040 1 1 1 1 1 1 1 1 1 1 4403 655 3872 4126 4897 4897 1100;1101 SITSPPSTSTTK 12 Phospho (STY) _S(ph)ITSPPSTSTTK_ S(0.938)IT(0.042)S(0.02)PPSTSTTK S(13.5)IT(-13.5)S(-16.81)PPS(-39.08)T(-42.86)S(-59.48)T(-65.78)T(-74.96)K 0 0 1 0 Q14938 Q14938 Q14938 NFIX Nuclear factor 1 X-type MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 872.961853027344 2 643.797415 1285.58028 NaN NaN NaN NaN NaN NaN NaN NaN 47.659 1 47.659 47.159 48.159 0 NaN NaN NaN 0.00015235 1 11045 126.32 85.036 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4404 1032 3873 4127 4898 4898 1772 SIVPSSPQPQR 11 Phospho (STY) _SIVPSS(ph)PQPQR_ SIVPS(0.044)S(0.956)PQPQR S(-62.2)IVPS(-13.4)S(13.4)PQPQR 0 0 1 0 Q9P246 Q9P246 Q9P246 STIM2 Stromal interaction molecule 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.888977050781 2 638.308284 1274.60202 36331.2130659955 1.5933 0.001017 179510 114.58 179510 114.58 752.890232099051 46.717 0.54159 46.717 46.464 47.005 0 45 18 3 0.98269814351187 0.00101547882175047 0.027797629570086 1.3318E-06 1 10771 140.75 104.41 3 16076000 16475 21938 17142 22044 17133 15680 16084 19364 25205 12334 15592 20724 17220 22525 17381 16071 16672 19652 24483 12062 1 1 1 1 1 1 1 1 1 1 4405 2101 3874 4128 4899 4899 3797 SKAPGSPLSSEGAAGEGVR 19 Phospho (STY) _SKAPGS(ph)PLSSEGAAGEGVR_ SKAPGS(0.998)PLS(0.001)S(0.001)EGAAGEGVR S(-47.49)KAPGS(29.3)PLS(-29.3)S(-29.3)EGAAGEGVR 0 0 1 1 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.732177734375 3 612.954433 1835.84147 35081.8509349754 2.1311 0.0013063 249240 152.78 249250 152.78 766.064092240297 46.291 0.75437 46.291 45.933 46.687 0 109 25 6 0.995269042104173 0.0055277117101793 0.143239388453624 5.8746E-16 1 10629 214.16 192.79 4 497820000 61433 20839 62441 21993 11802 59957 12953 32965 23476 6267.6 58135 19693 62198 23122 14993 58077 13418 34301 22717 6664.6 1 1 1 1 1 1 1 1 1 1 4406 1243 3875 4129 4900 4900 2190 SKASLEK 7 Phospho (STY) _SKAS(ph)LEK_ SKAS(1)LEK S(-38.23)KAS(38.23)LEK 0 0 1 1 P53985 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 510.6357421875 3 281.472159 841.394649 44440.729119182 1.5213 0.00042822 814160 229.16 814160 229.16 510.635418018723 44.605 0.71948 44.605 44.228 44.948 0 74 24 5 0.661821985351221 0.0139578337086536 0.182649730596302 0.0082436 1 10261 81.525 35.927 2 113350000 88087 107100 83314 103610 110890 94498 120030 104160 124050 4923.1 83335 101150 84521 106450 111040 95257 121850 104260 122230 7046.4 1 1 1 1 1 1 1 1 1 1 4407 705 3876 4130 4901 4901 1184 SKDASPINR 9 Phospho (STY) _SKDAS(ph)PINR_ S(0.002)KDAS(0.998)PINR S(-26.1)KDAS(26.1)PINR 0 0 1 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 509.276306152344 3 356.500889 1066.48084 44998.331662439 1.6088 0.00057354 428540 152.78 428540 152.78 509.275999323283 31.063 0.44815 31.063 30.882 31.33 0 33 14 3 0.619659577312224 0.0016266871603004 0.052232731358972 0.010964 1 6955 65.495 38.16 2 7854000 14570 16250 12601 15934 15904 14590 13283 15924 16924 1939.5 13779 15349 12838 16359 15911 14704 13746 15979 16545 2194.8 1 1 1 1 1 1 1 1 1 1 4408 963 3877 4131 4902 4902 1620;1626 SKDASPINRWSPTR 14 2 Phospho (STY) _S(ph)KDASPINRWS(ph)PTR_ S(0.726)KDAS(0.274)PINRWS(0.653)PT(0.347)R S(4.47)KDAS(-4.47)PINRWS(2.92)PT(-2.92)R 0 0 2 2 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.371704101563 3 592.260631 1773.76006 35800.5320303065 2.0128 0.0011921 257950 152.78 257950 152.78 745.370513640538 51.006 1.0713 51.006 50.533 51.604 0 118 36 4 0.846689245072631 0.0104286845531425 0.0377410145601459 0.0042779 1 11870 91.964 77.639 6 73562000 35845 57301 41337 59792 42233 34906 45520 47693 65188 11838 33939 54145 41325 60841 42870 36281 46716 47701 63487 12251 1 1 1 1 1 1 1 1 1 1 4409 963 3878 4132 4903 4903 1620;1621;1626;4542 SKDETEKEK 9 Unmodified _SKDETEKEK_ 0 0 0 2 Q8N9E0 Q8N9E0 Q8N9E0 FAM133A Protein FAM133A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.552398681641 4 274.139747 1092.52988 46054.0584622097 0.62196 0.0001705 835930 229.16 835930 229.16 503.301272037811 27.044 0.35275 27.044 26.886 27.238 3.5527E-15 24 11 3 0.597691900736664 0.00109525642661547 0.00800993344070233 0.053091 1 6038 15.891 0.85955 1 7034900 6430.4 6720.4 6264.6 8205.2 4891.1 5908.9 4569.7 7684.7 9031.7 2375.7 6084.2 6357 6300.2 8297.3 5044.3 6052 4789.2 7711.1 8722.3 2414.9 1 1 1 1 1 1 1 1 1 1 4410 1488 3879 4133 4904 4904 SKDEYEK 7 Phospho (STY) _S(ph)KDEYEK_ S(0.993)KDEY(0.007)EK S(21.64)KDEY(-21.64)EK 0 0 1 1 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.296203613281 3 326.798712 977.374307 41881.9192625364 1.2601 0.00041179 701230 229.16 701240 229.16 555.961673955712 40.671 1.0059 40.671 40.449 41.455 0 69 34 4 0.988673175129027 0.00390728693899047 0.0354171161014528 0.0073253 1 9241 84.188 55.984 2 66565000 32218 25766 33233 25085 20722 32228 21112 26160 27662 4130.4 30490 24337 33253 25913 21779 31916 21651 26600 27016 4494.7 1 1 1 1 1 1 1 1 1 1 4411 940 3880 4134 4905 4905 1553 SKDPGSAER 9 Phospho (STY) _SKDPGS(ph)AER_ S(0.001)KDPGS(0.999)AER S(-30.65)KDPGS(30.65)AER 0 0 1 1 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.880676269531 2 513.716228 1025.4179 37302.5357876939 1.7892 0.00091912 446090 229.16 446090 229.16 742.879127825309 26.646 0.3165 26.646 26.423 26.74 0 18 10 2 0.985106454969652 0.00149437802756449 0.0135393033117813 0.015316 1 5926 68.676 50.051 2 10219000 5662.7 9136.8 5629 9570.2 6597.1 5193.9 5372.2 7979.4 10600 2420.1 5358.2 8633.7 5679.5 9729.7 6625.2 5440.9 5670.5 7968.9 10238 2463.5 1 1 1 1 1 1 1 1 1 1 4412 2190 3881 4135 4906 4906 3966 SKEDSRR 7 Phospho (STY) _S(ph)KEDSRR_ S(0.995)KEDS(0.005)RR S(22.96)KEDS(-22.96)RR 0 0 1 2 P62995 P62995 P62995 TRA2B Transformer-2 protein homolog beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 472.585540771484 3 319.809834 956.407673 44914.1278546448 1.1415 0.00036506 477710 152.77 477710 152.78 472.585304789175 21.128 2.1842 21.128 20.88 23.065 -3.5527E-15 221 75 6 0.993985256949879 0.228530370984364 1 0.011837 1 4769 84.31 34.277 2 442520000 46348 45595 47712 47946 45578 48846 49182 51357 54329 4910.4 43862 43085 47945 49100 46434 48961 50031 51565 53388 5812.3 1 1 1 1 1 1 1 1 1 1 4413 776 3882 4136 4907 4907 1253 SKESVPEFPLSPPK 14 Phospho (STY) _SKESVPEFPLS(ph)PPK_ SKESVPEFPLS(1)PPK S(-61.76)KES(-65.81)VPEFPLS(61.76)PPK 0 0 1 1 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.767944335938 3 541.26729 1620.78004 35337.2874360887 2.3887 0.0012929 423380 229.16 423380 229.16 770.76456191553 78.809 2.1207 78.809 77.839 79.959 -1.4211E-14 321 73 6 0.912332146701618 0.00690632691344143 0.0947193066366322 8.0848E-05 1 18297 122.53 91.065 3 683160000 15568 22334 15672 20763 15460 16417 19967 21022 24183 10834 14731 21089 15781 21345 15769 16728 20224 21235 23683 10688 1 1 1 1 1 1 1 1 1 1 4414 411 3883 4137 4908 4908 663 SKESVPEFPLSPPK 14 Phospho (STY) _SKESVPEFPLS(ph)PPK_ SKESVPEFPLS(1)PPK S(-122.03)KES(-111.38)VPEFPLS(111.38)PPK 0 0 1 1 P16949 P16949 P16949 STMN1 Stathmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 462.661163330078 5 325.163284 1620.78004 45424.9998687255 0.49728 0.0001617 422860 137.5 422860 137.5 462.661115686159 78.856 1.3258 78.856 78.092 79.418 0 152 45 4 0.951942690765155 0.00228624936921486 0.0466392727830786 9.5449E-06 1 18493 137.45 118.67 3 27089000 11007 16746 11490 17781 11002 11348 12548 12746 17640 885.67 10417 15826 11539 18090 11220 11681 12838 12758 17190 1129 1 1 1 1 1 1 1 1 1 1 4415 411 3883 4137 4909 4909 663 SKFSPQK 7 Phospho (STY) _SKFS(ph)PQK_ S(0.045)KFS(0.955)PQK S(-13.29)KFS(13.29)PQK 0 0 1 1 Q9NS91 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.306762695313 3 301.144154 900.410633 43385.9422149603 0.84281 0.00025381 760970 229.16 760980 229.16 530.307080996835 48.075 0.81822 48.075 47.6 48.418 0 91 27 4 0.778316741944228 0.00288247279745236 0.0846414975045315 0.031277 1 11086 49.813 15.852 2 70325000 18905 32819 19154 33263 13533 19159 13002 23679 35324 3567.3 17890 31006 19203 33900 14079 19897 13871 23684 33907 3907 1 1 1 1 1 1 1 1 1 1 4416 2026 3884 4138 4910 4910 3680 SKGPAVGIDLGTTYSCVGVFQHGK 24 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)KGPAVGIDLGTTYSCVGVFQHGK_ S(1)KGPAVGIDLGTTYSCVGVFQHGK S(45.94)KGPAVGIDLGT(-45.94)T(-52.8)Y(-59.03)S(-63.99)CVGVFQHGK 1 0 1 1 P11142 P11142 P11142 HSPA8 Heat shock cognate 71 kDa protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1020.52740478516 3 867.412006 2599.21419 31408.7099037669 1.9516 0.0016929 176130 152.78 176130 152.78 1020.52471826819 89.966 0.58841 89.966 89.69 90.279 0 76 19 6 0.975987116503606 0.00614791725615263 0.105497770000333 1.2227E-12 1 20948 91.729 73.009 5 40000000 5766.2 8640.8 5162.7 9394.4 7798.9 6802.1 10039 8138.6 9847.3 30696 5454.1 8166.9 5269.7 9558.2 7790.2 7008.3 10106 9036.7 9724.4 29093 1 1 1 1 1 1 1 1 1 1 4417 359 3885 4139 4911 4911 581 SKGPAVGIDLGTTYSCVGVFQHGK 24 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)KGPAVGIDLGTTYSCVGVFQHGK_ S(1)KGPAVGIDLGTTYSCVGVFQHGK S(43.99)KGPAVGIDLGT(-43.99)T(-52.1)Y(-112.21)S(-67.59)CVGVFQHGK 1 0 1 1 P11142 P11142 P11142 HSPA8 Heat shock cognate 71 kDa protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.64501953125 4 650.810824 2599.21419 35378.998533088 2.1905 0.0014256 176060 114.58 176060 114.58 765.643298266952 89.973 0.75698 89.973 89.69 90.447 0 98 25 5 0.985349896734219 0.00822018194467106 0.14025143951593 1.4359E-17 1 20952 144.92 129.22 5 46229000 5247.1 9672.7 5346.2 9069.2 6804.7 5346.8 8109.5 8910.8 10123 17086 4965.5 9134 5397.9 9289 6839.6 5602.4 8247.3 9314.9 9903.3 16295 1 1 1 1 1 1 1 1 1 1 4418 359 3885 4139 4912 4912 581 SKGQESFK 8 Phospho (STY) _SKGQES(ph)FK_ SKGQES(1)FK S(-47.65)KGQES(47.65)FK 0 0 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.463989257813 2 495.71824 989.421926 34905.4553062849 2.4955 0.001237 693430 343.74 693430 343.75 839.462386102694 42.735 0.43133 42.735 42.538 42.969 0 28 14 2 0.981956328318115 0.00108969394606838 0.0126916879178768 0.0011701 1 9780 108.2 69.174 2 25957000 24513 30460 24908 28623 35646 26554 37195 31814 34297 6245.5 23197 28764 25193 29468 35559 26786 37708 31896 33964 6617.1 1 1 1 1 1 1 1 1 1 1 4419 315 3886 4140 4913 4913 519 SKINLQDLQGACTK 14 Phospho (STY) _S(ph)KINLQDLQGACTK_ S(1)KINLQDLQGACTK S(90.92)KINLQDLQGACT(-90.92)K 0 0 1 1 P04035 P04035 P04035 HMGCR 3-hydroxy-3-methylglutaryl-coenzyme A reductase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.096984863281 3 552.598934 1654.77497 35399.106442617 2.264 0.0012511 414700 229.16 414700 229.16 781.76114324527 71.883 0.32447 71.883 71.693 72.017 1.4211E-14 32 10 4 0.92340056976015 0.002111562488746 0.0197990738581485 8.5645E-07 1 16864 139.44 112.17 2 14575000 16525 14786 17987 15318 9976.4 18301 9111.6 14303 16374 14806 15643 13971 17928 15743 10592 18189 9515.2 14948 15848 14272 1 1 1 1 1 1 1 1 1 1 4420 287 3887 4141 4914 4914 478 SKLSPSPSLR 10 Phospho (STY) _SKLS(ph)PSPSLR_ SKLS(0.901)PS(0.099)PSLR S(-40.64)KLS(9.61)PS(-9.61)PS(-35.81)LR 0 0 1 1 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.308349609375 3 384.532189 1150.57474 42594.9682127992 1.6813 0.00064652 397300 152.78 397300 152.78 537.307416237297 49.432 0.66599 49.432 49.081 49.747 0 73 22 4 0.989783603098468 0.00375543463164744 0.089176844960644 6.3018E-05 1 11428 130.1 95.095 4 101600000 15408 14091 15505 13433 9863.2 13229 11348 13312 14202 1838.9 14580 13308 15541 13830 10366 13274 11558 13405 13892 2039.7 1 1 1 1 1 1 1 1 1 1 4421 1183 3888 4142 4915 4915 2067 SKPAGSDGER 10 Phospho (STY) _SKPAGS(ph)DGER_ S(0.001)KPAGS(0.999)DGER S(-28.36)KPAGS(28.36)DGER 0 0 1 1 Q1KMD3 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 514.594970703125 3 361.820399 1082.43937 43659.4819020752 1.03 0.00037266 422240 152.78 422240 152.78 514.595398701616 25.844 1.183 25.844 25.27 26.453 0 81 40 3 0.692830410609344 0.00435748919660252 0.0183867116806973 0.01111 1 5768 65.374 38.593 2 20012000 11266 14367 9794.1 13427 15984 10886 15264 13691 13835 3860.2 10655 13567 10021 13803 15844 11068 15533 13740 13711 3951.7 1 1 1 1 1 1 1 1 1 1 4422 1118 3889 4143 4916 4916 1944 SKPAGSDGERR 11 Phospho (STY) _SKPAGS(ph)DGERR_ SKPAGS(1)DGERR S(-48.44)KPAGS(48.44)DGERR 0 0 1 2 Q1KMD3 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 566.629943847656 3 413.854103 1238.54048 41698.0449059588 2.0214 0.00083655 369150 152.78 369150 152.78 566.629439435895 23.515 0.9581 23.515 23.266 24.224 0 92 32 5 0.984967311748758 0.0182018479595449 0.389977225071048 0.00017589 1 5255 115.56 78.787 2 34189000 4126.1 6147.7 5285.1 6117 8283.5 4109.2 8366.5 6151 6696.2 1554.3 3908.7 5807.4 5292 6250.3 8228.7 4237 8466.6 6137.6 6678 1605.9 1 1 1 1 1 1 1 1 1 1 4423 1118 3890 4144 4917 4917 1944 SKPDLESSLESLVFDLR 17 Phospho (STY) _SKPDLES(ph)SLESLVFDLR_ S(0.008)KPDLES(0.556)S(0.419)LES(0.017)LVFDLR S(-18.22)KPDLES(1.23)S(-1.23)LES(-15.15)LVFDLR 0 0 1 1 Q99549 Q99549 Q99549 MPHOSPH8 M-phase phosphoprotein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.105041503906 3 672.329277 2013.966 34444.9784359011 2.0673 0.0013899 227230 152.77 227230 152.77 825.103523035121 100.86 0.11456 100.86 100.78 100.9 0 9 3 3 0.713770566062811 0.000335969431617987 0.00833027723752668 0.013137 1 23647 65.207 47.996 4 15997000 6732.6 7733.3 7106.7 8105.8 7126.4 6494.7 7609.7 8132.8 7611.7 24272 6372.2 7307.5 7135.7 8274.2 7237.6 6648.1 7722.9 8825.6 7510.3 23043 1 1 1 1 1 1 1 1 1 1 4424 1770 3891 4145 4918 4918 3258 SKPIPIMPASPQK 13 Oxidation (M),Phospho (STY) _SKPIPIM(ox)PAS(ph)PQK_ SKPIPIM(1)PASPQK SKPIPIMPAS(1)PQK SKPIPIM(87.49)PASPQK S(-65.65)KPIPIMPAS(65.65)PQK 0 1 1 1 O00429 O00429 O00429 DNM1L Dynamin-1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.417907714844 3 497.254327 1488.74115 37514.1789726204 2.39 0.0011885 460860 229.16 460860 229.16 726.416735673754 59.327 0.68939 59.327 58.988 59.678 0 71 23 4 0.9023320028704 0.00250677024478252 0.0391039340163421 0.0086916 1 13918 87.49 52.878 2 22172000 15518 17587 12623 18663 15165 13687 13323 14792 20999 12117 14673 16620 12905 19017 15221 13978 13860 15160 20394 11752 1 1 1 1 1 1 1 1 1 1 4425 47 3892 4146 4919 4919 5 72 SKPIPIMPASPQK 13 Phospho (STY) _SKPIPIMPAS(ph)PQK_ SKPIPIMPAS(1)PQK S(-70.41)KPIPIMPAS(70.41)PQK 0 0 1 1 O00429 O00429 O00429 DNM1L Dynamin-1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.421264648438 3 491.922689 1472.74624 37007.861957153 2.1081 0.001037 465850 229.16 465850 229.16 721.085700034524 70.288 0.83317 70.288 69.878 70.711 0 98 28 5 0.95223381959052 0.0104998298265943 0.132033398527822 9.6967E-05 1 16457 117.29 95.421 2 115890000 20774 28939 22081 30261 21205 22504 23026 25079 32137 13846 19662 27345 22151 30866 21605 22961 23601 25473 31323 13618 1 1 1 1 1 1 1 1 1 1 4426 47 3892 4147 4920 4920 72 SKPKSDR 7 Phospho (STY) _SKPKS(ph)DR_ S(0.001)KPKS(0.999)DR S(-31.41)KPKS(31.41)DR 0 0 1 2 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 528.974548339844 3 299.811175 896.411696 43346.0532517504 1.3706 0.00041091 764360 229.16 764360 229.16 528.974077149498 25.347 0.58118 25.347 25.094 25.675 0 50 19 3 0.809781071434118 0.00477864789583647 0.05818932569873 0.032135 1 5656 59.426 29.953 2 10890000 11832 7432.6 11219 7679.7 7143.5 10371 6491.3 8965.2 8995.3 3007.4 11193 7022.7 11281 7913.5 7483.1 10264 6707.5 9137.9 8769.5 3039.3 1 1 1 1 1 1 1 1 1 1 4427 940 3893 4148 4921 4921 1554 SKPNLPSESR 10 Phospho (STY) _SKPNLPSES(ph)R_ SKPNLPS(0.025)ES(0.975)R S(-65.9)KPNLPS(-15.91)ES(15.91)R 0 0 1 1 Q08170 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.630981445313 3 398.855332 1193.54417 42916.9097097014 1.8205 0.00072612 383030 152.78 383040 152.78 551.63050792614 41.978 0.62474 41.978 41.683 42.308 0 65 21 4 0.91438938755474 0.00677678953024133 0.103948211931692 0.0072186 1 9596 78.285 52.554 3 57800000 21968 33627 21870 29540 43840 17468 42429 35751 33357 2984.5 20787 31743 22293 30386 43163 18283 43008 35243 33298 3637.7 1 1 1 1 1 1 1 1 1 1 4428 886 3894 4149 4922 4922 1443 SKPSSPVVSEK 11 Phospho (STY) _SKPSS(ph)PVVSEK_ S(0.013)KPS(0.182)S(0.805)PVVSEK S(-17.91)KPS(-6.45)S(6.45)PVVS(-48.27)EK 0 0 1 1 O75995 O75995 O75995 SASH3 SAM and SH3 domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.031127929688 3 408.867238 1223.57988 40002.1861872434 1.9493 0.000797 560480 229.16 560480 229.16 638.03040400394 43.68 0.38308 43.68 43.492 43.875 0 28 12 3 0.955981344059979 0.00128100043689894 0.00737872818903684 0.0010862 1 10026 98.421 74.449 4 17299000 10879 9905.7 10797 7992.2 38644 11475 38038 21089 7416.2 3242.6 10294 9346.6 11216 8378.8 37534 11473 37910 20879 8616.3 3541.4 1 1 1 1 1 1 1 1 1 1 4429 208 3895 4150 4923 4923 362 SKSDATASISLSSNLK 16 Phospho (STY) _SKS(ph)DATASISLSSNLK_ S(0.064)KS(0.936)DATASISLSSNLK S(-11.64)KS(11.64)DAT(-49.18)AS(-116.69)IS(-177.4)LS(-233.43)S(-255.4)NLK 0 0 1 1 Q9UBF8 Q9UBF8 Q9UBF8 PI4KB Phosphatidylinositol 4-kinase beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.773010253906 3 563.608263 1687.80296 36054.1641959096 2.1481 0.0012107 406600 229.16 406600 229.16 793.105512724492 69.943 0.66449 69.943 69.669 70.333 0 63 22 4 0.949625997475576 0.00250701209251128 0.0177547833541962 1.1146E-41 1 16408 334.43 290.42 7 19498000 11474 12247 12500 13494 10063 12211 11445 13520 14265 39090 10861 11577 12501 13759 10378 12387 11661 14689 13956 37121 1 1 1 1 1 1 1 1 1 1 4430 2120 3896 4151 4924 4924 3820 SKSDGEAKPEPSPSPR 16 Phospho (STY) _SKSDGEAKPEPSPS(ph)PR_ SKSDGEAKPEPS(0.043)PS(0.957)PR S(-62.63)KS(-58.23)DGEAKPEPS(-13.46)PS(13.46)PR 0 0 1 2 P26358 P26358 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.075134277344 4 437.951728 1747.77781 40159.6069425358 1.6624 0.00072806 392440 171.87 392450 171.87 610.074421304718 33.549 0.43238 33.549 33.384 33.816 0 41 14 4 0.971980305010657 0.00240176683867498 0.00626176973446238 0.0072426 1 7503 81.884 58.407 4 26068000 10366 10029 11032 9477.8 12090 11076 13452 12038 9233.2 2404.8 9811 9471.2 11085 9790.9 12222 11047 13512 12110 9289.3 2543 1 1 1 1 1 1 1 1 1 1 4431 479 3897 4152 4925 4925 793 SKSESPKEPEQLR 13 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)KSESPKEPEQLR_ S(0.946)KS(0.052)ES(0.001)PKEPEQLR S(12.56)KS(-12.56)ES(-28.21)PKEPEQLR 1 0 1 2 P09651 P09651 P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.369384765625 3 546.257453 1635.75053 37946.1592210749 1.509 0.00082431 279680 152.77 279680 152.78 699.367733497252 43.628 0.54943 43.628 43.354 43.903 0 61 18 5 0.737032653941651 0.00173430813635849 0.00482695004344258 0.0021349 1 9989 50.155 32.666 3 71769000 68095 73775 71513 70059 62490 72626 66036 70072 71279 7346.6 64449 69671 71709 72203 64003 72664 67192 70607 70109 8539.4 1 1 1 1 1 1 1 1 1 1 4432 341 3898 4153 4926 4926 558;559 SKSESPKEPEQLR 13 Acetyl (Protein N-term),2 Phospho (STY) _(ac)S(ph)KSES(ph)PKEPEQLR_ S(0.736)KS(0.332)ES(0.932)PKEPEQLR S(4.03)KS(-4.03)ES(9.95)PKEPEQLR 1 0 2 2 P09651 P09651 P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.688598632813 3 572.912897 1715.71686 37036.1785707144 2.0631 0.001182 266660 152.78 266670 152.78 725.688074802283 46.232 1.6521 46.232 45.585 47.237 0 228 56 5 0.954516264128185 0.00279300109513057 0.02494060676576 8.7087E-05 1 10566 76.341 54.187 3 73437000 14932 25562 18414 25988 23805 16025 26034 22792 28645 5609.1 14143 24150 18412 26497 23873 16603 26465 22768 28154 5809.1 1 1 1 1 1 1 1 1 1 1 4433 341 3898 4154 4927 4927 558;559 SKSFSLR 7 Phospho (STY) _SKS(ph)FSLR_ S(0.005)KS(0.993)FS(0.002)LR S(-23.19)KS(23.19)FS(-26.11)LR 0 0 1 1 Q9BT23 Q9BT23 Q9BT23 LIMD2 LIM domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 454.923095703125 3 302.147787 903.421532 45567.4434082618 -0.070261 -2.1229E-05 505630 152.78 505630 152.78 454.923064498554 54.905 0.66862 54.905 54.582 55.251 -7.1054E-15 72 22 4 0.98797396832143 0.0040358599411133 0.0610991791169888 0.0027509 1 12773 97.456 34.633 3 105440000 49532 5905.4 49851 6086.5 62328 46490 65849 40980 4975.9 1493.5 46871 5579.7 50338 6887.6 62506 44730 65192 41364 7491.6 2354.8 1 1 1 1 1 1 1 1 1 1 4434 1820 3899 4155 4928 4928 3333 SKSIEER 7 Phospho (STY) _SKS(ph)IEER_ S(0.262)KS(0.738)IEER S(-4.5)KS(4.5)IEER 0 0 1 1 Q15032;Q9UBL0 Q15032 Q15032 R3HDM1;ARPP21 R3H domain-containing protein 1;cAMP-regulated phosphoprotein 21 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.874694824219 2 464.710415 927.406276 38209.1952959918 2.1193 0.00098484 493130 229.16 493140 229.17 693.87494462754 31.893 0.35293 31.893 31.674 32.027 0 29 11 3 0.928806971875683 0.00161584167719512 0.0464797149318044 0.038685 1 7119 54.784 14.935 2 16723000 18652 15895 18104 17683 15588 17662 15636 17461 17111 3564.4 17648 15025 18230 18047 15969 17709 15954 17630 16821 3760.4 1 1 1 1 1 1 1 1 1 1 4435 1048 3900 4156 4929 4929 1808 SKSKDQAEEK 10 Phospho (STY) _S(ph)KSKDQAEEK_ S(0.747)KS(0.253)KDQAEEK S(4.71)KS(-4.71)KDQAEEK 0 0 1 2 Q08170 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.07080078125 3 410.518497 1228.53366 37464.1195977031 2.3857 0.00097937 744300 305.55 744310 305.55 716.403172588415 33.279 0.79598 33.279 32.852 33.648 0 85 27 5 0.980229418652986 0.00226853649017682 0.0085239108280747 0.00043204 1 7447 101.39 72.373 2 30097000 14861 19941 15929 21910 28213 12922 28518 23871 21968 3507.4 14067 18849 16129 22232 27904 13497 28835 23626 21954 3855.1 1 1 1 1 1 1 1 1 1 1 4436 886 3901 4157 4930 4930 1444;1445 SKSKDQAEEK 10 2 Phospho (STY) _S(ph)KS(ph)KDQAEEK_ S(1)KS(1)KDQAEEK S(62.36)KS(62.36)KDQAEEK 0 0 2 2 Q08170 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.725219726563 3 437.17394 1308.49999 36538.8616903539 2.1982 0.00096099 698920 305.55 698930 305.55 742.724929462098 36.63 2.3049 36.63 35.006 37.311 0 120 79 2 0.717245695784261 0.00244553481565099 0.023235125336048 0.016755 2 8279 62.357 39.554 1 41316000 70875 80062 70874 86033 105470 66686 106700 86357 91321 9499.4 67066 75666 71792 87661 105000 67970 108130 86146 90758 10943 2 2 2 2 2 2 2 2 2 2 4437 886 3901 4158 4931;4932 4932 1444;1445 SKSKDQAEEK 10 2 Phospho (STY) _S(ph)KS(ph)KDQAEEK_ S(1)KS(1)KDQAEEK S(47.53)KS(47.53)KDQAEEK 0 0 2 2 Q08170 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.722534179688 3 437.17394 1308.49999 NaN NaN NaN NaN NaN NaN NaN NaN 38.619 1 38.619 38.119 39.119 0 NaN NaN NaN 0.046708 1 8758 47.532 34.699 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4438 886 3901 4158 4933 4933 1444;1445 SKSLQLTGK 9 Phospho (STY) _SKS(ph)LQLTGK_ S(0.097)KS(0.902)LQLT(0.001)GK S(-9.66)KS(9.66)LQLT(-31.88)GK 0 0 1 1 Q9UBS9 Q9UBS9 Q9UBS9 SUCO SUN domain-containing ossification factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.013427734375 3 347.849518 1040.52673 40995.7496571675 2.2048 0.00076694 658800 229.16 658800 229.16 577.012276027348 56.588 0.41615 56.588 56.397 56.813 0 34 13 3 0.677059411417487 0.00269802402067666 0.0858231235538222 0.0064266 1 13223 80.905 56.553 3 14332000 10807 17426 9595.7 17541 16299 9091.1 15941 14095 21913 2134.2 10222 16462 9813.3 17868 16145 9556.3 16408 14009 21368 2335.8 1 1 1 1 1 1 1 1 1 1 4439 2128 3902 4159 4934 4934 3827 SKSPASVDR 9 Phospho (STY) _SKS(ph)PASVDR_ SKS(1)PASVDR S(-35.37)KS(35.37)PAS(-40.66)VDR 0 0 1 1 Q13243 Q13243 Q13243 SRSF5 Serine/arginine-rich splicing factor 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 495.601531982422 3 342.825373 1025.45429 43581.5052744046 1.4774 0.00050648 445640 152.78 445640 152.78 495.60091897833 30.115 0.51029 30.115 29.895 30.405 0 29 16 2 0.966457141160084 0.00848495872671543 0.213461701559652 2.0019E-06 1 6718 161.87 111.84 3 56663000 31007 32479 29908 31024 43697 32480 45006 31642 36269 3924.5 29336 30673 30350 31967 43540 32488 45510 31890 36157 4427.7 1 1 1 1 1 1 1 1 1 1 4440 939 3903 4160 4935 4935 1550 SKSPFRK 7 2 Phospho (STY) _S(ph)KS(ph)PFRK_ S(1)KS(1)PFRK S(80.71)KS(80.71)PFRK 0 0 2 2 Q14498 Q14498 Q14498 RBM39 RNA-binding protein 39 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 566.310485839844 3 337.147109 1008.4195 41707.1320930866 1.1373 0.00038343 679710 229.16 679710 229.16 566.310087852943 47.572 4.193 47.572 46.828 51.021 0 479 148 6 0.976951011421687 0.00277564638135159 0.00714775176311175 0.010446 1 10930 80.706 50.939 1 529850000 64575 71270 63641 77236 58168 64626 57302 63435 81654 5294.2 61101 67361 64068 78737 59363 65336 59037 63836 79536 6453.2 1 1 1 1 1 1 1 1 1 1 4441 1009 3904 4161 4936 4936 1714;1715 SKSPPKSPEEEGAVSS 16 Phospho (STY) _SKS(ph)PPKSPEEEGAVSS_ S(0.185)KS(0.775)PPKS(0.032)PEEEGAVS(0.005)S(0.003) S(-6.23)KS(6.23)PPKS(-13.84)PEEEGAVS(-21.99)S(-23.83) 0 0 1 2 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.085998535156 3 565.920618 1694.74003 35316.9045386796 2.3608 0.001336 404940 229.16 404940 229.16 795.084533614001 42.505 0.54301 42.505 42.165 42.708 0 54 18 4 0.7745183208807 0.00123021384192773 0.0366142298946424 0.00047359 1 9687 100.9 76.615 5 14902000 13754 12008 14258 12646 22576 15815 21412 15881 12882 11439 13017 11347 14428 12997 22394 15733 21618 16272 13072 11139 1 1 1 1 1 1 1 1 1 1 4442 832 3905 4162 4937 4937 1335;1336;1337 SKSPPKSPEEEGAVSS 16 2 Phospho (STY) _S(ph)KSPPKSPEEEGAVS(ph)S_ S(0.713)KS(0.288)PPKS(0.008)PEEEGAVS(0.861)S(0.13) S(3.92)KS(-3.92)PPKS(-19.49)PEEEGAVS(8.23)S(-8.23) 0 0 2 2 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.074401855469 3 592.576062 1774.70636 34809.1191423555 2.4123 0.0014295 386720 229.16 386730 229.16 821.73849494975 45.645 1.5389 45.645 45.007 46.546 -7.1054E-15 138 52 4 0.504408199882475 0.000509122495408321 0.00666682449609492 0.007 3 10416 85.805 72.074 10 37724000 82762 37441 83192 38922 52624 81578 50549 55501 38134 22832 78316 35378 83366 40559 55166 79582 51215 57370 38153 22784 3 3 3 3 3 3 3 3 3 3 4443 832 3905 4163 4938;4939;4940 4938 1335;1336;1337 SKSPSGQK 8 Phospho (STY) _SKS(ph)PSGQK_ SKS(0.983)PS(0.017)GQK S(-35.32)KS(17.72)PS(-17.72)GQK 0 0 1 1 Q9NTZ6 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.302917480469 3 300.13918 897.395711 42664.0668731739 1.5964 0.00047914 763520 229.16 763520 229.16 529.302285808771 29.353 0.55921 29.353 29.106 29.665 0 71 18 5 0.936629778968028 0.00998669763593643 0.147565934607522 0.00015794 1 6514 133.05 94.747 3 170310000 36577 39070 37438 37535 23831 33099 25511 32237 43674 2153.6 34615 36899 37485 38562 25028 33368 26385 32434 42323 2773.9 1 1 1 1 1 1 1 1 1 1 4444 2034 3906 4164 4941 4941 3695 SKSPSGQKR 9 Phospho (STY) _SKS(ph)PSGQKR_ S(0.136)KS(0.819)PS(0.045)GQKR S(-7.78)KS(7.78)PS(-12.6)GQKR 0 0 1 2 Q9NTZ6 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.336364746094 3 352.172884 1053.49682 41232.9151332657 1.8628 0.00065602 650710 229.16 650710 229.16 581.336166547174 25.168 0.72717 25.168 24.948 25.675 -3.5527E-15 89 24 6 0.883686315478321 0.00952532525081339 0.0915019667813033 0.035098 1 5597 55.899 30.312 3 251620000 16609 17135 16132 17657 16054 14503 18668 17486 18296 4527.2 15715 16190 16276 18047 16333 14723 18867 17561 18068 4667.6 1 1 1 1 1 1 1 1 1 1 4445 2034 3907 4165 4942 4942 3695 SKSPSPPR 8 Phospho (STY) _SKSPS(ph)PPR_ S(0.002)KS(0.082)PS(0.916)PPR S(-26.5)KS(-10.51)PS(10.51)PPR 0 0 1 1 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.258911132813 3 312.483058 934.427346 45271.1259856286 0.44731 0.00013978 488910 152.78 488910 152.78 465.258494447128 29.551 0.93701 29.551 28.987 29.924 -3.5527E-15 74 31 3 0.987188029018008 0.0012265524901649 0.022328605684908 0.0095287 1 6573 74.944 33.827 3 13077000 12586 15961 15601 16844 15367 15752 14763 16254 17150 4185.6 11921 15083 15532 17224 15602 15852 15122 16410 16820 4317.4 1 1 1 1 1 1 1 1 1 1 4446 2180 3908 4166 4943 4943 3937;3938;3939 SKSPSPPRLTEDR 13 2 Phospho (STY) _S(ph)KSPS(ph)PPRLTEDR_ S(0.509)KS(0.509)PS(0.648)PPRLT(0.334)EDR S(0)KS(0)PS(2.9)PPRLT(-2.9)EDR 0 0 2 2 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.683227539063 3 543.905965 1628.69607 37520.5882954612 1.7237 0.00093754 280890 152.78 280890 152.78 696.681308908176 43.081 2.2067 43.081 41.965 44.172 0 195 75 4 0.786133385098426 0.00198696674473656 0.0125753914820321 0.039453 2 9729 50.653 29.3 6 77105000 69470 62396 61299 70542 74542 65087 72140 67776 73220 18510 65706 58990 62352 71845 74830 65552 73577 68438 72201 18998 2 2 2 2 2 2 2 2 2 2 4447 2180 3909 4167 4944;4945 4944 3937;3938;3939 SKSPSPPRLTEDR 13 2 Phospho (STY) _SKS(ph)PS(ph)PPRLTEDR_ S(0.472)KS(0.64)PS(0.785)PPRLT(0.102)EDR S(-1.72)KS(1.72)PS(6.1)PPRLT(-9.08)EDR 0 0 2 2 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.679382324219 3 543.905965 1628.69607 NaN NaN NaN NaN NaN NaN NaN NaN 43.944 1 43.944 43.444 44.444 0 NaN NaN NaN 0.050488 1 10083 40.493 24.603 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4448 2180 3909 4167 4946 4946 3937;3938;3939 SKSPTISDK 9 Phospho (STY) _SKS(ph)PTISDK_ S(0.107)KS(0.72)PT(0.155)IS(0.018)DK S(-8.3)KS(6.68)PT(-6.68)IS(-15.91)DK 0 0 1 1 O15014 O15014 O15014 ZNF609 Zinc finger protein 609 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.329284667969 3 348.165395 1041.47436 41628.4779021399 2.3857 0.00083063 658200 229.16 658200 229.16 577.327864159991 42.071 0.59898 42.071 41.826 42.425 7.1054E-15 66 20 4 0.866598202801929 0.00518406674808792 0.0677701297279761 0.009509 1 9597 70.438 16.294 4 43657000 19551 37394 20078 41935 23164 20707 25558 27101 45493 3375.9 18502 35351 20229 42439 23377 21790 26446 27038 44043 3806.1 1 1 1 1 1 1 1 1 1 1 4449 74 3910 4168 4947 4947 125 SKSPVGNPQLIQFSR 15 Phospho (STY) _SKS(ph)PVGNPQLIQFSR_ S(0.001)KS(0.999)PVGNPQLIQFSR S(-28.83)KS(28.83)PVGNPQLIQFS(-119.81)R 0 0 1 1 Q9Y4F3 Q9Y4F3 Q9Y4F3 KIAA0430 Meiosis arrest female protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.072448730469 3 579.960971 1736.86108 36595.8408579664 2.7844 0.0016148 263420 152.78 263430 152.78 733.070100539801 68.348 1.4515 68.348 68.066 69.517 0 134 49 6 0.995144293870459 0.00489973578525886 0.12888635965194 1.5517E-10 1 16008 183.25 154.62 3 96324000 12193 10451 13923 10739 12637 11173 14074 11721 11461 8781.1 11544 9873.9 13907 11016 12918 11204 14185 12000 11420 8539.7 1 1 1 1 1 1 1 1 1 1 4450 2279 3911 4169 4948 4948 4215 SKSQDQAR 8 Phospho (STY) _SKS(ph)QDQAR_ S(0.019)KS(0.981)QDQAR S(-17.08)KS(17.08)QDQAR 0 0 1 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.381469726563 2 500.216395 998.418238 36656.1775084155 2.5305 0.0012658 458130 229.16 458130 229.16 729.379570159673 23.397 0.4345 23.397 23.236 23.671 0 42 14 4 0.996665068585709 0.00476775488850224 0.126568591180954 0.012293 1 5239 79.492 53.449 2 12630000 7791.9 7753.1 5974.6 6820.6 4683.3 6879.5 5594.4 6179.7 7976.3 1564.9 7366.3 7318.8 6106.5 7061.1 4844 6887.2 5716.1 6272.9 7769.2 1616.5 1 1 1 1 1 1 1 1 1 1 4451 963 3912 4170 4949 4949 1627 SKSQDQARK 9 Phospho (STY) _SKS(ph)QDQARK_ S(0.039)KS(0.961)QDQARK S(-13.9)KS(13.9)QDQARK 0 0 1 2 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.676025390625 3 376.511677 1126.5132 39760.4240878185 1.9416 0.00073102 608650 229.16 608650 229.16 605.675138750124 26.23 0.43867 26.23 26.045 26.483 0 35 14 3 0.994674080828912 0.00875491855120273 0.183588837180126 0.014005 1 5840 73.466 48.908 2 31252000 13921 13354 13865 11107 12704 14307 12111 11839 13346 2230.4 13173 12603 13949 11593 12953 14171 12390 12038 13116 2374.2 1 1 1 1 1 1 1 1 1 1 4452 963 3913 4171 4950 4950 1627 SKSVKEDSNLTLQEK 15 Phospho (STY) _SKS(ph)VKEDSNLTLQEK_ S(0.058)KS(0.942)VKEDSNLTLQEK S(-12.13)KS(12.13)VKEDS(-58.55)NLT(-93.56)LQEK 0 0 1 2 P46940 P46940 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.513305664063 3 595.959184 1784.85572 33152.5067588507 2.5036 0.0014921 512700 305.55 512710 305.55 901.844497104827 56.618 0.41614 56.618 56.425 56.841 0 33 13 4 0.97224103370606 0.00158229677017646 0.0538093672247717 3.8498E-07 1 13228 164.94 139.53 4 11973000 11006 11436 12247 11229 7514.7 11913 7230.6 11615 12596 42556 10419 10802 12202 11553 7906.4 11987 7520.7 12944 12201 40340 1 1 1 1 1 1 1 1 1 1 4453 617 3914 4172 4951 4951 1020 SKTSPVVSGSSSK 13 Phospho (STY) _SKTS(ph)PVVSGSSSK_ S(0.171)KT(0.249)S(0.579)PVVSGSSSK S(-5.29)KT(-3.67)S(3.67)PVVS(-36.92)GS(-57.08)S(-62.69)S(-65.38)K 0 0 1 1 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.378967285156 3 444.213185 1329.61773 39137.655687957 1.6759 0.00074445 515890 229.16 515890 229.17 673.378173980103 40.469 0.33612 40.469 40.322 40.658 0 27 10 4 0.793507806949028 0.00220491925277467 0.0416086961005123 0.0046284 1 9222 88.187 74.103 7 19088000 21783 23999 24280 24468 21630 24997 23180 25275 27218 7175.1 20622 22674 24275 25103 22132 25049 23632 25558 26685 7341.2 1 1 1 1 1 1 1 1 1 1 4454 1180 3915 4173 4952 4952 2048 SKVGSTENIK 10 Phospho (STY) _SKVGS(ph)TENIK_ S(0.056)KVGS(0.731)T(0.213)ENIK S(-11.18)KVGS(5.36)T(-5.36)ENIK 0 0 1 1 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.684143066406 3 381.519949 1141.53802 40051.129648532 1.4302 0.00054566 600660 229.16 600660 229.16 610.683327561193 45.668 0.43738 45.668 45.495 45.933 0 47 14 4 0.835500193066044 0.00600904811579028 0.0752444646003609 0.0094798 1 10532 70.784 29.206 3 53806000 30081 47668 33969 47656 42905 34938 42085 41041 51537 4818.3 28479 45030 34089 48728 43009 35673 43137 41076 50451 5486.9 1 1 1 1 1 1 1 1 1 1 4455 491 3916 4174 4953 4953 810 SLAPDRSDDEHDPLDNTSRPR 21 Phospho (STY) _SLAPDRS(ph)DDEHDPLDNTSRPR_ S(0.001)LAPDRS(0.998)DDEHDPLDNTSRPR S(-28.24)LAPDRS(28.24)DDEHDPLDNT(-58.32)S(-58.32)RPR 0 0 1 2 Q92614 Q92614 Q92614 MYO18A Unconventional myosin-XVIIIa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.314697265625 4 619.023945 2472.06667 38426.8398502019 1.6013 0.00099124 92547 57.289 92549 57.29 676.312394076297 44.032 0.73255 44.032 43.639 44.371 0 74 24 4 0.897111936473304 0.00309845224501545 0.068867552694539 0.00075907 1 10088 99.536 81.712 4 28631000 12437 10820 10655 10986 11907 11983 12297 13071 13324 8984.5 11762 10223 10848 11286 12016 11997 12527 13340 13103 8762.5 1 1 1 1 1 1 1 1 1 1 4456 1608 3917 4175 4954 4954 2960 SLASPLQPCSSTWEPASCGK 20 Phospho (STY) _SLAS(ph)PLQPCSSTWEPASCGK_ S(0.18)LAS(0.819)PLQPCSSTWEPASCGK S(-6.57)LAS(6.57)PLQPCS(-42.3)S(-65.02)T(-76.16)WEPAS(-110.18)CGK 0 0 1 0 P10242 P10242 P10242 MYB Transcriptional activator Myb MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.432678222656 3 748.3218 2241.94357 32856.9637375055 1.5634 0.0011699 204160 152.78 204160 152.78 901.432907781145 80.155 0.52887 80.155 79.845 80.374 0 46 17 4 0.968953762256917 0.00235396297723027 0.0145463957709621 1.1009E-05 1 18753 132.84 112.75 6 16577000 9542.3 6062.4 10262 7015.6 4702.5 11723 5651.8 8175.8 6669.4 16501 9032.1 5732.4 10226 7220.9 5114.7 11527 5735.4 8835.6 6537.6 15727 1 1 1 1 1 1 1 1 1 1 4457 351 3918 4176 4955 4955 569 SLDDKPYK 8 Phospho (STY) _S(ph)LDDKPYK_ S(1)LDDKPYK S(49.17)LDDKPY(-49.17)K 0 0 1 1 P17026 P17026 P17026 ZNF22 Zinc finger protein 22 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.979309082031 2 523.233722 1044.45289 35244.2502886626 1.5969 0.00083555 656960 343.74 656960 343.75 866.978317071267 54.764 0.40392 54.764 54.582 54.986 7.1054E-15 24 13 2 0.82778281048519 0.00061855040022338 0.0167799817088122 0.0013821 1 12771 102.52 73.437 2 9809600 35087 10342 35031 10592 8702.7 34942 10695 20944 10861 43694 33201 9770.8 34958 11252 10414 33844 10795 22868 10710 41628 1 1 1 1 1 1 1 1 1 1 4458 413 3919 4177 4956 4956 668 SLDGAAAVDSADR 13 Phospho (STY) _S(ph)LDGAAAVDSADR_ S(1)LDGAAAVDSADR S(108.42)LDGAAAVDS(-108.42)ADR 0 0 1 0 P11171 P11171 P11171 EPB41 Protein 4.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.862060546875 2 664.279921 1326.54529 35242.2490670717 1.1702 0.00077731 172490 114.58 172490 114.58 778.860990872009 50.449 0.49179 50.449 50.183 50.675 0 40 16 3 0.900644795126812 0.00208363335567287 0.0779319678678067 4.0184E-31 1 11720 299.66 253.02 2 26555000 15109 24224 14712 26333 38125 15678 41831 28923 29757 17463 14295 22895 15131 26738 37348 16390 42072 29025 29874 17113 1 1 1 1 1 1 1 1 1 1 4459 360 3920 4178 4957 4957 584 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAK 39 Phospho (STY) _SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAK_ SLDGAAAVDS(0.006)ADRS(0.994)PRPTSAPAITQGQVAEGGVLDASAK S(-51.32)LDGAAAVDS(-21.89)ADRS(21.89)PRPT(-47.56)S(-47.56)APAIT(-96.17)QGQVAEGGVLDAS(-305.42)AK 0 0 1 2 P11171 P11171 P11171 EPB41 Protein 4.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.701843261719 6 636.979394 3815.8327 36320.187462005 1.7324 0.0011035 119920 76.388 119920 76.389 713.701422914027 71.201 0.66255 71.201 70.914 71.576 0 121 22 7 0.990079283515697 0.0100601925661832 0.104689186202234 4.3964E-46 1 16689 344.66 317.41 7 124760000 3383.3 9448.5 3786 10503 7582.8 3372.4 8156.1 10715 10320 142010 3202.9 8931.7 3836.7 10605 7481 4058.1 8333.9 14742 10091 133970 1 1 1 1 1 1 1 1 1 1 4460 360 3921 4179 4958 4958 584;585;586;4389 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAK 39 Phospho (STY) _SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAK_ S(0.009)LDGAAAVDS(0.031)ADRS(0.593)PRPT(0.184)S(0.184)APAITQGQVAEGGVLDASAK S(-18.42)LDGAAAVDS(-12.88)ADRS(5.1)PRPT(-5.1)S(-5.1)APAIT(-34.31)QGQVAEGGVLDAS(-115.79)AK 0 0 1 2 P11171 P11171 P11171 EPB41 Protein 4.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 856.239685058594 5 764.173817 3815.8327 33321.4938105701 1.6099 0.0012302 119950 91.666 119960 91.667 856.240608183801 71.159 1.39 71.159 70.596 71.986 0 207 47 8 0.301311449754145 0.000456629198080071 0.00652561971491089 6.3211E-06 1 16884 120.44 107.19 7 970130000 6039.6 5972.1 6139.4 5652.8 5750.6 6913 6356.3 6905.3 5807.4 24256 5715.4 5639.8 6172.6 5843.8 5866.8 6918.6 6426.1 7657.7 5753.4 23000 1 1 1 1 1 1 1 1 1 1 4461 360 3921 4179 4959 4959 584;585;586;4389 SLDGAPIGVMDQSLMK 16 Oxidation (M),Phospho (STY) _S(ph)LDGAPIGVMDQSLM(ox)K_ SLDGAPIGVMDQSLM(1)K S(1)LDGAPIGVMDQSLMK SLDGAPIGVM(-46.34)DQSLM(46.34)K S(75.6)LDGAPIGVMDQS(-75.6)LMK 0 1 1 0 O43491 O43491 O43491 EPB41L2 Band 4.1-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.711791992188 3 586.599834 1756.77767 47715.4603354045 1.3825 0.00081097 260440 152.77 260440 152.78 739.709904476012 91.477 0.25612 91.477 91.253 91.509 0 12 8 2 0.894359744747822 0.00052310240963533 0.0148537223641911 0.0031088 1 21310 93.517 71.319 4 8205900 5050.7 4124.7 4074.5 3434.8 6258.7 5464.7 5840.6 5087.4 4847.4 15917 4775.6 3892.6 4184.8 3601.4 6215.5 5412.2 5938.1 5597.3 4825 15105 1 1 1 1 1 1 1 1 1 1 4462 114 3922 4180 4960 4960 12 199 SLDIQSLDIQCEELSDAR 18 Acetyl (Protein N-term) _(ac)SLDIQSLDIQCEELSDAR_ 1 0 0 0 P13489 P13489 P13489 RNH1 Ribonuclease inhibitor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.339477539063 3 712.003802 2132.98958 38665.7994453478 1.7242 0.0012276 -0.092209 -6.5653E-05 1.632 0.001162 712.338060879799 94.38 0.48615 94.38 94.168 94.654 0 40 16 4 0.766054314899664 0.00167288315219547 0.0366977984121397 3.1067E-05 1 21982 85.636 62.833 1 5804000 5007.1 5420.3 4730 4630.6 4235.2 5418.9 5376.9 6118.3 5062.9 10076 4737 5115.9 4774.9 4815.4 4342.9 5424.2 5409.8 6413.6 5008.9 9629.1 1 1 1 1 1 1 1 1 1 1 4463 376 3923 4181 4961 4961 SLDIQSLDIQCEELSDAR 18 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)LDIQSLDIQCEELSDAR_ S(0.822)LDIQS(0.178)LDIQCEELSDAR S(6.63)LDIQS(-6.63)LDIQCEELS(-72.46)DAR 1 0 1 0 P13489 P13489 P13489 RNH1 Ribonuclease inhibitor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.66259765625 3 738.659246 2212.95591 38493.8126020451 1.6143 0.0011924 0.8977 0.00066309 2.512 0.0018555 738.660115309081 98.031 0.554 98.031 97.702 98.256 0 40 18 3 0.69157312793461 0.000520429834551401 0.022433361651115 6.3712E-05 1 22774 78.234 63.881 3 5022200 3963 2681.5 3379.8 2166.2 3044.3 3155.2 3218 3673.5 2983.1 11887 3747.8 2530.1 3433 2271.5 3111.4 3147.3 3260.9 4022.9 2953.4 11278 1 1 1 1 1 1 1 1 1 1 4464 376 3923 4182 4962 4962 613 SLDLFNCEVTNLNDYR 16 Unmodified _SLDLFNCEVTNLNDYR_ 0 0 0 0 Q92688;P39687 Q92688;P39687 P39687 ANP32B;ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member B;Acidic leucine-rich nuclear phosphoprotein 32 family member A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1101.54345703125 2 986.957097 1971.89964 30742.5066912133 1.7645 0.0017414 116090 114.58 116100 114.58 1101.53718952914 96.616 0.4057 96.616 96.346 96.752 1.4211E-14 29 13 3 0.555638675368339 0.000425652005830527 0.00651548712106651 1.701E-22 2 22478 278.82 236.11 1 6624500 6718.7 9694.6 7779.3 10807 9297.5 7514 10468 12141 10582 48115 6361.6 9164.5 7793.1 10975 9362.2 7827.2 10602 13449 10437 45587 2 2 2 2 2 2 2 2 2 2 4465 567;1616 3924 4183 4963;4964 4964 SLDSEPSVPSAAKPPSPEK 19 Phospho (STY) _SLDSEPSVPSAAKPPS(ph)PEK_ SLDSEPSVPSAAKPPS(1)PEK S(-138.77)LDS(-97.32)EPS(-68.9)VPS(-50.52)AAKPPS(50.52)PEK 0 0 1 1 Q7Z3K3 Q7Z3K3 Q7Z3K3 POGZ Pogo transposable element with ZNF domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 897.815856933594 3 668.317149 2001.92962 33249.7352643552 1.7586 0.0011753 342900 229.16 342900 229.16 897.814431993738 60.818 0.87789 60.818 60.369 61.247 7.1054E-15 123 29 6 0.982033819016479 0.0032864557508559 0.0364211275492827 2.8913E-11 1 14206 197.28 160.48 5 117270000 19487 13467 20901 13389 17481 20977 19686 18554 14624 13608 18445 12721 20927 13874 17968 20683 19794 19115 14645 13243 1 1 1 1 1 1 1 1 1 1 4466 1332 3925 4184 4965 4965 2401 SLDSPTSSPGAGTR 14 Phospho (STY) _SLDS(ph)PTSSPGAGTR_ SLDS(1)PTSSPGAGTR S(-59.48)LDS(48.18)PT(-48.18)S(-69.09)S(-105.73)PGAGT(-183.56)R 0 0 1 0 Q9P107 Q9P107 Q9P107 GMIP GEM-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.388427734375 2 706.806303 1411.59805 34047.9515725308 2.3701 0.0016752 162110 114.58 162110 114.58 821.386854733111 38.638 0.78565 38.638 38.383 39.169 0 54 26 3 0.981950744350949 0.00110988067727154 0.0269786158906248 2.5096E-31 1 8744 301.31 186.34 6 24961000 30368 10897 30553 12394 12466 32169 11439 17502 11201 3911.1 28737 10302 30531 12952 13704 31185 11686 18242 11062 4087.8 1 1 1 1 1 1 1 1 1 1 4467 2095 3926 4185 4966 4966 3784 SLDYLNLDK 9 Phospho (STY) _S(ph)LDYLNLDK_ S(0.992)LDY(0.008)LNLDK S(20.79)LDY(-20.79)LNLDK 0 0 1 0 Q96GV9 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 810.43310546875 2 580.765387 1159.51622 34879.6100704835 2.2525 0.0013082 394590 229.16 394590 229.16 810.429909367388 87.262 0.61797 87.262 87.028 87.646 1.4211E-14 26 20 2 0.966974016410246 0.00054774099926203 0.0100457684598932 0.033788 1 20388 57.175 23.912 2 8553600 8159.3 13475 9865 14577 13309 10165 12330 13855 16305 23615 7727.2 12735 9875.7 14829 13292 10477 12707 14466 15920 22557 1 1 1 1 1 1 1 1 1 1 4468 1685 3927 4186 4967 4967 3100 SLEDLRAPK 9 Phospho (STY) _S(ph)LEDLRAPK_ S(1)LEDLRAPK S(102.28)LEDLRAPK 0 0 1 1 Q8TEH3 Q8TEH3 Q8TEH3 DENND1A DENN domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 522.959899902344 3 370.18479 1107.53254 44625.9735025088 1.4796 0.00054772 412700 152.77 412700 152.78 522.959617303741 61.152 0.79098 61.152 60.803 61.594 -7.1054E-15 71 26 4 0.918507317926559 0.00268329382909692 0.0612291907573225 0.00039596 1 14316 102.28 67.052 1 15854000 8136.5 9399.9 8932.4 9595.6 11849 8105.4 11835 9082.1 10228 1394.2 7702.2 8880.9 8984.3 9816.5 11851 8205.8 12003 9114.2 10160 1523 1 1 1 1 1 1 1 1 1 1 4469 1551 3928 4187 4968 4968 2846 SLEGGGCPAR 10 Phospho (STY) _S(ph)LEGGGCPAR_ S(1)LEGGGCPAR S(138.76)LEGGGCPAR 0 0 1 0 Q9Y613 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.801086425781 2 542.218081 1082.42161 37570.1218166666 1.555 0.00084313 211320 114.58 211320 114.58 656.799559403005 33.966 0.4864 33.966 33.648 34.134 0 47 16 4 0.944054305539483 0.00148781665021045 0.0257997762806218 4.0152E-06 1 7578 138.76 104.8 1 37159000 18259 15317 16946 16466 24897 15524 24101 18368 16214 3142.3 17272 14476 17235 16822 24777 15644 24355 18409 16333 3383.9 1 1 1 1 1 1 1 1 1 1 4470 2305 3929 4188 4969 4969 4249 SLEGLNQELEEVFVK 15 Phospho (STY) _S(ph)LEGLNQELEEVFVK_ S(1)LEGLNQELEEVFVK S(238.8)LEGLNQELEEVFVK 0 0 1 0 Q9C073 Q9C073 Q9C073 FAM117A Protein FAM117A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.402770996094 3 605.292164 1812.85466 35545.7949417043 1.5483 0.00093716 252400 152.78 252400 152.78 758.401676849925 102.05 0.64081 102.05 101.87 102.51 0 54 21 4 0.997779875440931 0.0293681931119818 0.32801407204959 3.3634E-16 1 24043 238.8 210.46 1 399040000 3457.2 7640.1 2558.3 14585 21904 4871.9 17692 17101 16964 513660 3268 7257 2856.6 14396 21025 6437.5 18191 32157 16769 484060 1 1 1 1 1 1 1 1 1 1 4471 1882 3930 4189 4970 4970 3425 SLELSSLAGPGEDPLSADSLGKPTR 25 Phospho (STY) _S(ph)LELSSLAGPGEDPLSADSLGKPTR_ S(0.921)LELS(0.037)S(0.041)LAGPGEDPLSADSLGKPTR S(13.49)LELS(-13.91)S(-13.49)LAGPGEDPLS(-46.34)ADS(-52.21)LGKPT(-53.49)R 0 0 1 1 Q13615 Q13615 Q13615 MTMR3 Myotubularin-related protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1013.19677734375 3 859.752974 2576.23709 32203.7445289878 1.6324 0.0014034 177700 152.77 177700 152.78 1012.52601589158 92.952 0.37882 92.952 92.77 93.149 0 30 12 4 0.521250423497664 0.000545818028147704 0.00854703631552456 0.029978 1 21649 54.241 42.276 6 8200200 2851.2 3742.9 3709.1 2487.1 7699.4 3673.6 6898.1 6090.7 3181 28132 2701.2 3528.6 3732.9 2649.3 7562.9 3712.6 6958.3 6863.4 3296.3 26631 1 1 1 1 1 1 1 1 1 1 4472 973 3931 4190 4971 4971 1648 SLGAVEPICSVNTPR 15 Phospho (STY) _SLGAVEPICSVNT(ph)PR_ SLGAVEPICSVNT(1)PR S(-174.23)LGAVEPICS(-74.64)VNT(74.64)PR 0 0 1 0 P35236 P35236 P35236 PTPN7 Tyrosine-protein phosphatase non-receptor type 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.976013183594 2 840.394762 1678.77497 31897.4558472117 1.2597 0.0010586 136340 114.58 136340 114.58 954.976135139573 68.769 0.35707 68.769 68.555 68.912 0 25 11 3 0.762597069839091 0.000291302356780541 0.0079408030195975 1.0839E-15 1 16150 232.34 205.67 3 11019000 13910 12723 13118 12891 11510 14002 10406 13997 12853 44998 13160 12020 13233 13243 11762 14070 10713 15396 12578 42695 1 1 1 1 1 1 1 1 1 1 4473 543 3932 4191 4972 4972 4447 SLGEKSPAASGAR 13 Phospho (STY) _SLGEKS(ph)PAASGAR_ SLGEKS(0.998)PAAS(0.002)GAR S(-37.64)LGEKS(26.45)PAAS(-26.45)GAR 0 0 1 1 O75683 O75683 O75683 SURF6 Surfeit locus protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.318603515625 3 437.541525 1309.60274 42081.0472452662 2.1015 0.00091947 349170 152.78 349170 152.78 590.316827928389 38.154 0.31786 38.154 37.952 38.27 7.1054E-15 23 10 3 0.973011513833919 0.00116383195362874 0.0192769026366341 0.011734 1 8635 67.214 55.348 3 11010000 11908 14749 12059 15698 7629.7 11877 9426.2 12112 15418 2905.2 11269 13938 12083 15998 8035.2 12084 9672.8 12228 14959 3015.9 1 1 1 1 1 1 1 1 1 1 4474 199 3933 4192 4973 4973 350 SLGEQDQMTLRPPEK 15 Phospho (STY) _S(ph)LGEQDQMTLRPPEK_ S(1)LGEQDQMTLRPPEK S(54.41)LGEQDQMT(-54.41)LRPPEK 0 0 1 1 P48681 P48681 P48681 NES Nestin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 756.392028808594 3 603.613131 1807.81756 35463.3373168971 1.7758 0.0010719 253100 152.78 253100 152.78 756.389947168732 65.387 0.8392 65.387 64.908 65.748 0 74 28 4 0.97309256400867 0.00124520451266126 0.038494800978344 0.00070303 1 15336 99.846 68.426 2 10963000 6373.5 19877 6894.6 17416 7234.2 6205.5 7290.5 10575 18303 9262.9 6032.9 18763 6916.8 17852 7332.5 6792.7 7719.9 10718 17592 8966.9 1 1 1 1 1 1 1 1 1 1 4475 628 3934 4193 4974 4974 1039 SLGGAVGSVASGAR 14 Phospho (STY) _S(ph)LGGAVGSVASGAR_ S(1)LGGAVGSVASGAR S(80.41)LGGAVGS(-80.41)VAS(-120.43)GAR 0 0 1 0 Q8NHG8 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.388244628906 2 634.803366 1267.59218 35565.1788289586 1.743 0.0011064 180500 114.58 180500 114.58 749.385696403613 61.388 0.43373 61.388 61.247 61.68 0 35 14 3 0.93338065848354 0.00184549591212537 0.0903891518271123 8.309E-07 1 14395 155.03 117.6 3 19485000 21876 17497 22927 17549 17327 26549 17234 19449 17570 11248 20705 16529 22957 18161 17913 26142 17557 20123 17322 11041 1 1 1 1 1 1 1 1 1 1 4476 1525 3935 4194 4975 4975 2805 SLGGQQGSPK 10 Phospho (STY) _SLGGQQGS(ph)PK_ SLGGQQGS(1)PK S(-52.74)LGGQQGS(52.74)PK 0 0 1 0 Q6DN90 Q6DN90 Q6DN90 IQSEC1 IQ motif and SEC7 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.8994140625 2 519.734421 1037.45429 37509.9929052154 1.8709 0.00097239 440930 229.16 440930 229.17 748.898752760699 39.467 0.48855 39.467 39.226 39.715 0 38 16 3 0.843644134315134 0.00206110859455446 0.0387015533872192 0.00034469 1 8964 110.14 57.021 2 23478000 16342 53343 14143 53737 18525 15599 17129 31677 57046 4891.7 15456 50394 14419 54539 18559 17548 18596 31299 54594 5339.2 1 1 1 1 1 1 1 1 1 1 4477 1236 3936 4195 4976 4976 2179 SLGGSATSLCLLPSEETSGEESR 23 Phospho (STY) _SLGGS(ph)ATSLCLLPSEETSGEESR_ S(0.191)LGGS(0.743)AT(0.064)S(0.003)LCLLPSEETSGEESR S(-5.91)LGGS(5.91)AT(-10.67)S(-24.46)LCLLPS(-91.76)EET(-96.08)S(-97.81)GEES(-100.85)R 0 0 1 0 Q9P244 Q9P244 Q9P244 LRFN1 Leucine-rich repeat and fibronectin type III domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 893.082885742188 3 816.359636 2446.05708 34653.5597693206 1.5347 0.0012529 93570 76.387 93572 76.388 893.080742733207 83.92 0.28846 83.92 83.697 83.985 0 13 9 2 0.971806520215857 0.000591805992994904 0.0140381565860202 7.4387E-05 1 19604 101.43 84.744 8 6761300 4756.1 4479.5 3968.5 4495.2 4890 3899.4 4848.5 4523.8 4961.4 26379 4497.5 4231.7 4052.5 4605 4907.5 3992.6 4940.4 5308.3 4890.6 24944 1 1 1 1 1 1 1 1 1 1 4478 2100 3937 4196 4977 4977 3795 SLGNILQAKPTSSPAK 16 Phospho (STY) _SLGNILQAKPTSS(ph)PAK_ SLGNILQAKPT(0.004)S(0.096)S(0.9)PAK S(-159.97)LGNILQAKPT(-23.82)S(-9.7)S(9.7)PAK 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.597351074219 4 423.723652 1690.8655 40438.9114739756 1.5519 0.00065758 405620 171.87 405630 171.87 595.846924903 76.446 0.63992 76.446 76.126 76.766 0 97 21 6 0.979024842621985 0.00614845145502712 0.13642963991749 1.1096E-10 1 17891 192.09 173.73 4 101290000 4902.5 7272.4 4123.4 7578.6 3615.4 4599.5 3299.3 5231.5 8443.4 2275.4 4636.1 6871.7 4190 7714.9 3699.3 4755.5 3514.4 5291.6 8112.9 2263.6 1 1 1 1 1 1 1 1 1 1 4479 953 3938 4197 4978 4978 1600 SLGPSLATDKS 11 Phospho (STY) _S(ph)LGPSLATDKS_ S(0.986)LGPS(0.014)LATDKS S(18.48)LGPS(-18.48)LAT(-54.44)DKS(-69.71) 0 0 1 1 Q9H3N1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.432373046875 2 578.268294 1154.52203 34694.3264829804 2.3749 0.0013733 396290 229.16 396290 229.16 807.431273155523 64.043 0.84348 64.043 63.721 64.564 0 89 28 4 0.821626722707877 0.00152220596686526 0.0402343087175688 6.403E-10 1 15011 180.61 118.66 4 49470000 39003 19433 41307 19041 20471 41420 23008 26679 17453 14102 36915 18355 41211 19934 22034 40360 23146 27758 17457 13896 1 1 1 1 1 1 1 1 1 1 4480 1931 3939 4198 4979 4979 3503 SLGSASPGPGQPPLSSPTR 19 Phospho (STY) _SLGSASPGPGQPPLSS(ph)PTR_ SLGSASPGPGQPPLS(0.292)S(0.541)PT(0.167)R S(-114.25)LGS(-105.66)AS(-94.98)PGPGQPPLS(-2.67)S(2.67)PT(-5.12)R 0 0 1 0 Q9C0B5 Q9C0B5 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.689880371094 3 624.966562 1871.87786 36810.0190527441 1.2779 0.00079867 122230 76.388 122230 76.388 701.354863233714 55.963 1.1776 55.963 55.364 56.541 -7.1054E-15 158 39 7 0.991450745103877 0.00438318916006002 0.032571412687272 1.5991E-07 2 13039 147.26 134.49 6 58010000 45913 38089 50032 37508 40122 51998 43795 44194 46309 16609 43461 35978 50028 38780 41356 51407 44472 45132 45586 16663 2 2 2 2 2 2 2 2 2 2 4481 1884 3940 4199 4980;4981 4981 3429 SLGSTEGESESRPGK 15 Phospho (STY) _S(ph)LGSTEGESESRPGK_ S(1)LGSTEGESESRPGK S(38.23)LGS(-38.23)T(-43.46)EGES(-110.19)ES(-140.37)RPGK 0 0 1 1 O43566 O43566 O43566 RGS14 Regulator of G-protein signaling 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.009704589844 3 534.233196 1599.67776 37901.9166891357 1.7047 0.00091071 285970 152.77 285970 152.78 687.008565098203 39.396 0.5754 39.396 39.112 39.688 0 71 19 5 0.948651380317692 0.00730052672784299 0.0800135158933275 1.1754E-10 1 8925 190.55 162.91 5 67300000 31436 13175 32126 13559 36340 30779 38683 27799 13848 4648.9 29749 12448 32366 14175 36639 30054 38584 28140 14718 5020.8 1 1 1 1 1 1 1 1 1 1 4482 118 3941 4200 4982 4982 206 SLGVLPFTLNSGSPEK 16 Phospho (STY) _SLGVLPFTLNSGS(ph)PEK_ SLGVLPFTLNSGS(1)PEK S(-135.6)LGVLPFT(-94.16)LNS(-33.72)GS(33.72)PEK 0 0 1 0 P42695 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.7294921875 3 575.953482 1724.83862 36717.158495491 1.8676 0.0010757 265260 152.78 265260 152.78 728.728676283064 100.82 0.31425 100.82 100.73 101.04 0 32 10 5 0.969697321370799 0.00117059488780589 0.0258050224202473 1.6851E-07 1 23645 165.69 129.4 4 167490000 5970.6 5880.7 7029.6 6286.6 5898.9 6922.4 6161.8 7500 5180 18201 5653.7 5557.6 7004.1 6440.3 6055.8 6951.8 6232.7 8049.1 5152.7 17312 1 1 1 1 1 1 1 1 1 1 4483 592 3942 4201 4983 4983 964 SLHGPCPVTTFGPK 14 Phospho (STY) _S(ph)LHGPCPVTTFGPK_ S(1)LHGPCPVTTFGPK S(36.28)LHGPCPVT(-36.28)T(-71.61)FGPK 0 0 1 0 O95544 O95544 O95544 NADK NAD kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.353942871094 3 526.577581 1576.71091 35158.6170991136 1.5442 0.00081316 290130 152.77 290130 152.78 679.685686017159 68.918 0.68006 68.918 68.612 69.293 0 57 22 3 0.959288634551238 0.0059968736837206 0.0524087022877186 1.6177E-10 1 16193 183.84 164 3 79159000 38533 26870 41708 26527 29859 45871 30531 33533 29411 7453.1 36474 25382 41671 27569 31009 44975 31015 34339 29067 7794 1 1 1 1 1 1 1 1 1 1 4484 251 3943 4202 4984 4984 423 SLIVEGK 7 Phospho (STY) _S(ph)LIVEGK_ S(1)LIVEGK S(94.69)LIVEGK 0 0 1 0 P35659 P35659 P35659 DEK Protein DEK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.373901367188 2 413.209519 824.404485 39530.3042795077 2.2989 0.00094993 554590 229.16 554590 229.16 642.372329593282 65.489 0.64014 65.489 65.196 65.836 0 53 21 3 0.879850676565286 0.00368234009392274 0.146227233532795 0.0062596 1 15380 94.692 8.9611 1 22705000 30226 17880 30322 17689 12486 33075 12456 22418 19609 4914.5 28602 16890 30309 18422 13730 32341 12877 23048 19044 5146.5 1 1 1 1 1 1 1 1 1 1 4485 552 3944 4203 4985 4985 901 SLKESEQESEEEILAQKK 18 Phospho (STY) _SLKESEQES(ph)EEEILAQKK_ SLKES(0.001)EQES(0.999)EEEILAQKK S(-34.98)LKES(-30.32)EQES(30.32)EEEILAQKK 0 0 1 2 Q9BW71 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.4267578125 4 547.012249 2184.01989 36694.4205003074 1.9391 0.0010607 418940 229.16 418940 229.16 776.42619108739 65.181 0.40536 65.181 64.908 65.314 0 35 13 4 0.84349761203334 0.00157018782424617 0.0417423032101949 0.008792 1 15324 77.689 55.848 3 10707000 8087.8 6444.2 8211.7 5558.5 7292.6 8753.9 6453.1 7594.8 7507.5 24961 7653.6 6082.5 8248.7 5812.7 7444 8664.3 6637.9 8415.1 7362.9 23679 1 1 1 1 1 1 1 1 1 1 4486 1849 3945 4204 4986 4986 3382 SLKIVQR 7 Phospho (STY) _S(ph)LKIVQR_ S(1)LKIVQR S(51.27)LKIVQR 0 0 1 1 CON__REFSEQ:XP_585019 CON__REFSEQ:XP_585019 CON__REFSEQ:XP_585019 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 461.282867431641 3 308.507315 922.500117 46788.4750884413 -0.25156 -7.7607E-05 495210 152.78 495210 152.78 461.282749769361 54.883 0.31719 54.883 54.669 54.986 0 24 10 3 0.787427347646829 0.000805663073525102 0.00342579169325705 0.029536 1 12811 51.268 14.934 1 8551300 16661 8964.5 18252 10225 8383.9 16928 7592 12417 10005 1508.4 15772 8475.6 18165 10529 9081.7 16615 7832.1 12676 9769.3 1707.8 1 1 1 1 1 1 1 1 1 1 + 4487 27 3946 4205 4987 4987 47 SLLCGEDEAADENPESQEMLEEQLVR 26 Unmodified _SLLCGEDEAADENPESQEMLEEQLVR_ 0 0 0 0 Q9HAV4 Q9HAV4 Q9HAV4 XPO5 Exportin-5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1074.83740234375 3 997.77798 2990.31211 30404.4053870085 1.5884 0.0015849 76558 76.387 76559 76.389 1074.49972244185 87.515 0.35498 87.515 87.349 87.704 1.4211E-14 29 11 3 0.674195163961382 0.00148240627053719 0.0310788141516834 7.3707E-12 2 20424 186.55 171.94 1 9721600 5834.7 6480.8 7112.1 6920.7 7144.8 6606 7374.7 8644.5 7200.8 57810 5525.9 6124.7 7088.9 7074.1 7251.7 6770 7491 10334 7112.4 54635 2 2 2 2 2 2 2 2 2 2 4488 1973 3947 4206 4988;4989 4988 SLLDIISDPDAGTPEDK 17 Unmodified _SLLDIISDPDAGTPEDK_ 0 0 0 0 Q8WVM8 Q8WVM8 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.740539550781 3 595.963273 1784.86799 36780.5258993959 1.826 0.0010882 256350 152.78 256350 152.78 748.738765623731 99.781 0.14354 99.781 99.693 99.836 -1.4211E-14 10 4 3 0.798379475058407 0.00137651698552153 0.0383603742281712 6.0619E-08 1 23226 171.26 148.13 1 20189000 10713 12575 12157 10568 11714 11361 11350 12530 11797 27588 10143 11868 12152 10986 11909 11419 11583 13355 11621 26267 1 1 1 1 1 1 1 1 1 1 4489 1571 3948 4207 4990 4990 SLLLEPPRGTPDR 13 Phospho (STY) _SLLLEPPRGT(ph)PDR_ S(0.001)LLLEPPRGT(0.999)PDR S(-32.35)LLLEPPRGT(32.35)PDR 0 0 1 1 Q53GT1 Q53GT1 Q53GT1 KLHL22 Kelch-like protein 22 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 587.315002441406 3 510.927379 1529.76031 40443.6381373338 1.5622 0.00079815 149510 76.387 149510 76.388 587.313686681867 67.794 1.4367 67.794 66.863 68.3 0 121 48 3 0.47723424747857 0.00176080049669059 0.0507013296140911 0.022605 1 15839 76.151 50.027 2 9970000 10497 9912.3 11073 11365 9546.2 10453 9766.8 10815 10603 4133.6 9934.8 9372.1 11098 11566 9781.5 10531 9954.1 10959 10426 4142.6 1 1 1 1 1 1 1 1 1 1 4490 1151 3949 4208 4991 4991 4595 SLLNKPK 7 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)LLNKPK_ S(1)LLNKPK S(60.15)LLNKPK 1 0 1 1 P62316 P62316 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.407409667969 2 461.243893 920.473233 37893.421382126 2.3712 0.0010937 496840 229.16 496840 229.16 690.406581452309 64.065 0.60381 64.065 63.782 64.385 1.4211E-14 63 20 4 0.996372271177183 0.00354504540139153 0.115300201348357 0.0092454 1 15022 60.151 40.389 1 88907000 36985 29124 37397 27734 61705 34262 59084 43694 30415 13781 34999 27504 37926 28666 61120 34195 59483 43878 31226 13988 1 1 1 1 1 1 1 1 1 1 4491 762 3950 4209 4992 4992 1245 SLLSSPTK 8 Phospho (STY) _SLLSS(ph)PTK_ SLLS(0.002)S(0.998)PTK S(-70.49)LLS(-28.23)S(28.23)PT(-57.21)K 0 0 1 0 Q92667 Q92667 Q92667 AKAP1 A-kinase anchor protein 1, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 457.594818115234 3 304.819448 911.436514 46382.7734055345 0.7563 0.00023054 501200 152.78 501200 152.78 457.594823784032 62.906 0.58105 62.906 62.644 63.225 0 48 19 3 0.931256219539675 0.00312046288573159 0.0234177303742146 0.00054908 1 14765 117.31 84.121 4 25370000 10284 11740 9733.7 11666 7695.4 9373.4 7769.3 10692 13558 879.75 9729 11090 9808.1 11946 7936.2 9515.9 8063.4 10700 13132 1075.8 1 1 1 1 1 1 1 1 1 1 4492 1614 3951 4210 4993 4993 2980 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 Phospho (STY) _SLNFQEDDDTSRETFASDTNEALASLDES(ph)QEGHAEAK_ SLNFQEDDDTSRETFASDTNEALASLDES(1)QEGHAEAK S(-308.04)LNFQEDDDT(-238.65)S(-231.29)RET(-219.22)FAS(-206.98)DT(-178.77)NEALAS(-78.88)LDES(78.88)QEGHAEAK 0 0 1 1 Q9H814 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1150.27099609375 4 1035.18838 4136.72439 30263.3068519519 1.1129 0.0011521 110690 114.58 110690 114.58 1150.27101671916 85.092 0.29047 85.092 84.982 85.273 0 31 9 5 0.953876574228633 0.00303251660327442 0.0578468088586831 4.9059E-72 2 19881 403.89 378.61 8 12817000 3367.9 1102.9 2508 2127.8 1522.6 3247.6 2718.3 3846.5 2799.1 94897 3183.7 1047.7 2565.1 2140.2 1620.3 3391.5 2711.8 6694.6 2758.4 89446 2 2 2 2 2 2 2 2 2 2 4493 1956 3952 4211 4994;4995 4994 3562;3563 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 Phospho (STY) _SLNFQEDDDTS(ph)RETFASDTNEALASLDESQEGHAEAK_ SLNFQEDDDT(0.293)S(0.707)RETFASDTNEALASLDESQEGHAEAK S(-76.82)LNFQEDDDT(-3.83)S(3.83)RET(-32.22)FAS(-106.68)DT(-150.25)NEALAS(-283.19)LDES(-340.59)QEGHAEAK 0 0 1 1 Q9H814 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1150.27124023438 4 1035.18838 4136.72439 29780.1697757461 0.46784 0.0004843 110690 114.58 110690 114.58 1150.52291309654 87.829 0.55273 87.829 87.616 88.168 0 49 18 5 0.964596203977986 0.00479642772870416 0.0383165203331801 1.55E-86 1 20487 447.06 417.48 8 32472000 523.45 2437.2 1648.9 2674.3 1352.5 2008.7 1329.2 3848 1975.7 55164 499.54 2303.7 1592 2720.8 1390.3 2170.1 1371.9 5450.8 1922 52033 1 1 1 1 1 1 1 1 1 1 4494 1956 3952 4211 4996 4996 3562;3563 SLNLEDYK 8 Phospho (STY) _S(ph)LNLEDYK_ S(1)LNLEDYK S(33.63)LNLEDY(-33.63)K 0 0 1 0 Q92541 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.398498535156 2 531.23118 1060.44781 36603.40087684 2.7746 0.001474 431380 229.16 431380 229.16 760.394676309485 79.316 0.51148 79.316 79.078 79.589 0 35 17 3 0.868616519761814 0.000989943231041162 0.0553364958433013 0.013892 1 18582 78.964 34.539 2 7924600 14735 17028 14157 17111 17762 16686 18003 16627 16426 22971 13941 16086 14333 17557 17814 16786 18271 17372 16275 22015 1 1 1 1 1 1 1 1 1 1 4495 1597 3953 4212 4997 4997 2933 SLNLEDYKK 9 Phospho (STY) _S(ph)LNLEDYKK_ S(1)LNLEDYKK S(60.63)LNLEDY(-60.63)KK 0 0 1 1 Q92541 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.351989746094 3 397.1882 1188.54277 39276.7552407237 2.1553 0.00085607 576960 229.16 576970 229.16 626.351066254785 72.442 0.52519 72.442 72.196 72.721 0 47 17 4 0.925937087778932 0.001714933404657 0.0210933216255765 0.0078803 1 17005 79.875 35.259 2 14618000 13173 17187 12095 16240 16520 13106 15867 15747 18788 5380.2 12461 16230 12294 16682 16497 13320 16262 15855 18414 5430.6 1 1 1 1 1 1 1 1 1 1 4496 1597 3954 4213 4998 4998 2933 SLNLVDSPQPLLEK 14 Phospho (STY) _S(ph)LNLVDSPQPLLEK_ S(0.996)LNLVDS(0.004)PQPLLEK S(23.51)LNLVDS(-23.51)PQPLLEK 0 0 1 0 P46019 P46019 P46019 PHKA2 Phosphorylase b kinase regulatory subunit alpha, liver isoform MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.056396484375 3 544.946328 1631.81715 37926.3364402466 2.0493 0.0011168 280350 152.78 280350 152.78 698.055928880506 95.721 0.57745 95.721 95.45 96.027 0 70 19 5 0.907440765002624 0.00503232255019908 0.09908514752913 8.1748E-05 1 22258 122.53 89.58 2 17325000 7227 3594 6692.6 4855.9 13089 7607.9 13677 9253.3 5106.2 8002.4 6836.6 3402.3 6849.2 4953.1 12905 7538.6 13659 9459.1 5401.8 7749.4 1 1 1 1 1 1 1 1 1 1 4497 604 3955 4214 4999 4999 996 SLNPPIFLK 9 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)LNPPIFLK_ S(1)LNPPIFLK S(57.28)LNPPIFLK 1 0 1 0 Q8N5C7 Q8N5C7 Q8N5C7 DTWD1 DTW domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.3818359375 2 575.799033 1149.58351 36984.6086331287 1.4991 0.00086317 199000 114.58 199000 114.58 690.380628146481 102 0.17027 102 101.9 102.07 -1.4211E-14 14 5 3 0.942504231612216 0.00270169310877662 0.065194824655509 0.0020412 1 24023 57.281 38.476 1 26419000 6848.1 4932 7606.8 6114.9 18519 7067.5 16613 10220 4711.1 20702 6482.9 4665.8 7746 6221.7 18111 7120.1 16676 10753 5153.2 19730 1 1 1 1 1 1 1 1 1 1 4498 1471 3956 4215 5000 5000 2718 SLPAEEGSSGK 11 Phospho (STY) _S(ph)LPAEEGSSGK_ S(1)LPAEEGSSGK S(77.87)LPAEEGS(-77.87)S(-91.36)GK 0 0 1 0 Q9UKJ3 Q9UKJ3 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.40576171875 2 571.242276 1140.47 34681.5232341485 2.1924 0.0012524 401170 229.16 401170 229.16 800.405415059211 46.739 0.34223 46.739 46.546 46.888 0 31 11 4 0.987201405690248 0.000973325575201919 0.0220203383554463 9.6428E-07 1 10794 150.49 101.14 3 11815000 23099 25300 21357 23244 21053 19786 24046 25068 24106 39562 21851 23889 21608 23936 21425 20128 24335 26133 23783 37833 1 1 1 1 1 1 1 1 1 1 4499 2173 3957 4216 5001 5001 3920 SLPAFPTSSLLTQSQK 16 Phospho (STY) _S(ph)LPAFPTSSLLTQSQK_ S(1)LPAFPTSSLLTQSQK S(45.13)LPAFPT(-45.13)S(-69.33)S(-79.63)LLT(-143.47)QS(-170.82)QK 0 0 1 0 Q99698 Q99698 Q99698 LYST Lysosomal-trafficking regulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.409912109375 3 595.63252 1783.87573 36009.5327669524 2.0186 0.0012023 256500 152.78 256500 152.78 748.743865902493 98.13 0.5839 98.13 97.846 98.43 0 73 19 5 0.921032826396847 0.00557354316301136 0.230492707359037 1.2982E-10 1 22749 182.47 138.33 6 27934000 9369.1 3363.7 11259 3761 2480 9808 3466.4 5611.9 3579.5 13939 8872.6 3179.8 11123 3934.6 3049.1 9534.8 3484.2 6211.8 3527.1 13255 1 1 1 1 1 1 1 1 1 1 4500 1783 3958 4217 5002 5002 3287 SLPAGDALYLSFNPPQPSR 19 Phospho (STY) _S(ph)LPAGDALYLSFNPPQPSR_ S(1)LPAGDALYLSFNPPQPSR S(115.91)LPAGDALY(-115.91)LS(-132.38)FNPPQPS(-199.95)R 0 0 1 0 Q92974 Q92974 Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.728820800781 3 704.005017 2108.99322 35498.4369680178 1.3536 0.00095292 108510 76.388 108510 76.389 780.727831162734 99.501 0.91546 99.501 98.977 99.892 0 88 31 4 0.959651008285588 0.0108718875040633 0.358660932752617 2.3783E-13 1 23093 213.23 190.79 4 93065000 5138.6 6255.4 6267 7076.2 7023.3 6866.6 7714 10174 6690 45350 4866.6 5913.9 6256.2 7212.1 7091.4 7018.9 7791 11444 6644.5 42938 1 1 1 1 1 1 1 1 1 1 4501 1636 3959 4218 5003 5003 3026 SLPGLASSVK 10 Phospho (STY) _S(ph)LPGLASSVK_ S(1)LPGLASSVK S(56.46)LPGLAS(-56.46)S(-76.85)VK 0 0 1 0 Q9NUL7 Q9NUL7 Q9NUL7 DDX28 Probable ATP-dependent RNA helicase DDX28 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.930297851563 2 519.76519 1037.51583 36785.2881258053 2.3605 0.0012269 440900 229.16 440900 229.16 748.928958647628 77.663 0.497 77.663 77.398 77.895 0 33 16 3 0.676753352171861 0.00118643251622464 0.0394482536745424 0.00032343 1 18197 111.93 60.834 3 12663000 18644 10935 19074 10120 16736 18048 18071 15083 10801 10966 17644 10325 19156 10568 17134 17720 18131 15575 10965 10675 1 1 1 1 1 1 1 1 1 1 4502 2039 3960 4219 5004 5004 3703 SLPGPAPCLK 10 Phospho (STY) _S(ph)LPGPAPCLK_ S(1)LPGPAPCLK S(131.83)LPGPAPCLK 0 0 1 0 Q01433 Q01433 Q01433 AMPD2 AMP deaminase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.433532714844 2 560.267042 1118.51953 35525.7563684177 2.1767 0.0012195 409020 229.16 409030 229.16 789.430656248384 71.11 0.42779 71.11 70.914 71.342 -1.4211E-14 36 14 4 0.775324416345003 0.0010009891464419 0.0262426370810322 8.5905E-05 1 16682 131.83 76.762 1 15020000 11806 13064 13484 11836 32346 12815 31154 19432 11577 28568 11178 12334 13710 12244 31675 12938 31233 20097 12253 27350 1 1 1 1 1 1 1 1 1 1 4503 836 3961 4220 5005 5005 1350 SLPITIEMLK 10 Phospho (STY) _S(ph)LPITIEMLK_ S(1)LPITIEMLK S(35.37)LPIT(-35.37)IEMLK 0 0 1 0 Q8IZ21 Q8IZ21 Q8IZ21 PHACTR4 Phosphatase and actin regulator 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.991455078125 3 408.881831 1223.62366 41413.59147486 0.85504 0.00034961 373640 152.77 373640 152.78 561.991064165354 101.29 0.1442 101.29 101.22 101.36 0 10 4 3 0.926350731854739 0.00255892294206886 0.0804651534910662 0.00018943 1 23796 112.5 77.611 2 35231000 7563.1 4617.1 5377 4169.1 9678.5 7373.2 7313.6 7618.4 5091 12289 7148.4 4359 5588.2 4359.5 9532.3 7273.7 7497.3 8002.6 5117.5 11748 1 1 1 1 1 1 1 1 1 1 4504 1439 3962 4221 5006 5006 2670 SLPLISASR 9 Phospho (STY) _S(ph)LPLISASR_ S(0.974)LPLIS(0.026)ASR S(15.77)LPLIS(-15.77)AS(-38.46)R 0 0 1 0 Q5VV41 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.849914550781 2 512.265357 1022.51616 39187.9186157315 1.7824 0.00091309 223680 114.58 223680 114.58 626.846874171708 78.063 0.8001 78.063 77.751 78.551 0 97 27 5 0.991346555141281 0.00180988387008608 0.0199403077040668 0.031861 1 18252 58.083 20.294 3 139890000 10491 15281 11522 12926 8623.8 9765.1 10960 12830 14640 4365.3 9930.6 14422 11512 13365 8959.2 9975.8 11145 12882 14289 4407.3 1 1 1 1 1 1 1 1 1 1 4505 1206 3963 4222 5007 5007 2122 SLPLNPK 7 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)LPLNPK_ S(1)LPLNPK S(51.69)LPLNPK 1 0 1 0 P62306 P62306 P62306 SNRPF Small nuclear ribonucleoprotein F MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 560.3037109375 2 445.722794 889.431034 41681.5587160387 1.6452 0.00073329 257070 114.58 257070 114.58 560.302561376783 71.755 0.40488 71.755 71.549 71.954 0 28 13 3 0.825715354858009 0.00099010763180356 0.026347089061198 0.017757 1 16843 51.688 40.815 1 5382100 6820.5 7301.1 6593 7760.8 6345.9 6155 6149.9 7397.6 7321.6 5979.8 6453.1 6899.8 6648.5 7914.7 6452.7 6267.9 6301.6 7552.4 7174.6 5801.9 1 1 1 1 1 1 1 1 1 1 4506 761 3964 4223 5008 5008 1244 SLPSPGVLCGSAR 13 Phospho (STY) _SLPS(ph)PGVLCGSAR_ S(0.063)LPS(0.937)PGVLCGSAR S(-11.69)LPS(11.69)PGVLCGS(-72.32)AR 0 0 1 0 P18848 P18848 P18848 ATF4 Cyclic AMP-dependent transcription factor ATF-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.404479980469 2 690.820702 1379.62685 35879.087424985 2.1407 0.0014788 165860 114.58 165870 114.58 805.403307278418 72.107 0.53008 72.107 71.809 72.339 0 39 17 5 0.981782045751878 0.00158298282969961 0.0409341606952508 5.7899E-07 1 16921 156.2 117.39 3 12816000 14895 11249 15001 11929 9529.7 16562 7202.4 12326 12773 13233 14095 10630 15027 12281 9966.2 16366 7595.7 12927 12367 12746 1 1 1 1 1 1 1 1 1 1 4507 433 3965 4224 5009 5009 704 SLPSSPERR 9 2 Phospho (STY) _S(ph)LPS(ph)SPERR_ S(0.997)LPS(0.573)S(0.43)PERR S(23.45)LPS(1.25)S(-1.25)PERR 0 0 2 1 O95685 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.325439453125 2 594.744135 1187.47372 36862.5013335813 1.4836 0.00088237 192660 114.58 192660 114.58 709.325729362566 35.508 0.44062 35.508 35.269 35.71 0 33 14 3 0.982821664749058 0.00105039625263645 0.0361709305010723 0.01049 1 7978 63.944 44.302 3 9156200 14577 9513.8 12707 9791.3 11649 15840 10737 11912 9864 5658.4 13787 8988.9 12888 10134 11870 15569 10949 12271 9769.8 5603.8 1 1 1 1 1 1 1 1 1 1 4508 256 3966 4225 5010 5010 429;430 SLPSSSQLKGSPQAISR 17 Phospho (STY) _SLPSSSQLKGS(ph)PQAISR_ SLPSSSQLKGS(0.999)PQAISR S(-56.46)LPS(-43.58)S(-36.3)S(-33.72)QLKGS(33.72)PQAIS(-43.31)R 0 0 1 1 Q8WYP5 Q8WYP5 Q8WYP5 AHCTF1 Protein ELYS MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 761.415222167969 3 608.306807 1821.89859 35897.1484620423 1.6325 0.00099305 251150 152.78 251150 152.78 761.08257099369 57.73 0.65985 57.73 57.363 58.023 7.1054E-15 101 22 6 0.99464274315259 0.00785003135155713 0.320230708243921 6.3314E-05 1 13456 114.57 84.361 6 250380000 23515 25880 24244 25638 18648 25155 21380 26422 26505 13345 22253 24446 24307 26331 19298 25277 21772 26857 25935 13177 1 1 1 1 1 1 1 1 1 1 4509 1585 3967 4226 5011 5011 2914 SLPTTVPESPNYR 13 Phospho (STY) _SLPTTVPES(ph)PNYR_ SLPTTVPES(0.999)PNY(0.001)R S(-71.03)LPT(-57.87)T(-44.34)VPES(32.89)PNY(-32.89)R 0 0 1 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.961669921875 3 514.239623 1539.69704 40576.0623633961 1.7973 0.00092425 148540 76.388 148550 76.388 590.62732637096 61.268 1.1748 61.268 60.628 61.803 -7.1054E-15 137 39 6 0.880830403871239 0.00527364750555437 0.103801976600683 0.00016711 1 14314 102.12 80.211 5 310510000 5289.1 5881 5856.6 6209.8 7757.9 6731 7281 6887.5 6259.4 2636.1 5006.9 5557.4 5887 6364.3 7752.8 6730.5 7406.3 6982 6219.5 2641.6 1 1 1 1 1 1 1 1 1 1 4510 1273 3968 4227 5012 5012 2263;2264 SLPTTVPESPNYR 13 Phospho (STY) _S(ph)LPTTVPESPNYR_ S(1)LPTTVPESPNYR S(38.91)LPT(-38.91)T(-44.81)VPES(-90.84)PNY(-111.33)R 0 0 1 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 885.93994140625 2 770.855796 1539.69704 32988.3443122278 2.494 0.0019225 148640 114.58 148640 114.58 885.937703370678 63.11 0.52452 63.11 62.79 63.314 0 56 17 4 0.934939140714631 0.00348350415825008 0.0980109137640361 1.1276E-10 2 14814 195.94 156.36 5 32546000 18467 26574 19895 27383 30885 19620 34253 31227 30218 32320 17480 25108 20092 27942 30737 20219 34594 31847 29987 31156 2 2 2 2 2 2 2 2 2 2 4511 1273 3968 4227 5013;5014 5014 2263;2264 SLPTTVPESPNYR 13 2 Phospho (STY) _S(ph)LPTTVPES(ph)PNYR_ S(1)LPTTVPES(1)PNYR S(90.31)LPT(-48.27)T(-45.69)VPES(45.69)PNY(-117.52)R 0 0 2 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 925.419677734375 2 810.838961 1619.66337 31957.1084577469 1.5888 0.0012882 141310 114.58 141310 114.58 925.419400018623 64.56 0.92747 64.56 64.211 65.138 0 64 31 3 0.982293444836321 0.000809749879778577 0.0236599114238978 4.1582E-22 1 15140 257.52 214.8 10 18796000 6359.4 7357.2 6507.2 7150.4 10181 6371.2 9595 9055.2 7010.6 17625 6018.2 6948.9 6587.7 7341.9 10104 6487.8 9724.2 9510.1 7026.9 16806 1 1 1 1 1 1 1 1 1 1 4512 1273 3968 4228 5015 5015 2263;2264 SLPVSICR 8 Phospho (STY) _S(ph)LPVSICR_ S(1)LPVSICR S(57.34)LPVS(-57.34)ICR 0 0 1 0 O94885 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.820739746094 2 506.238285 1010.46202 40135.3693765317 1.614 0.00081708 226340 114.58 226340 114.58 620.819753762242 66.527 0.49083 66.527 66.316 66.807 0 49 16 4 0.747410953140744 0.00259618571712157 0.089408194178618 0.00059227 1 15632 125.18 87.095 2 19127000 27827 6721.7 28621 6652.5 7193.6 30759 6793.4 13813 7881.2 3880.9 26334 6349.3 28511 7222.1 8560.7 29550 6964.1 14629 7730.3 3974 1 1 1 1 1 1 1 1 1 1 4513 224 3969 4229 5016 5016 387 SLQEEHVAVAQLR 13 Phospho (STY) _S(ph)LQEEHVAVAQLR_ S(1)LQEEHVAVAQLR S(121.26)LQEEHVAVAQLR 0 0 1 0 Q15149 Q15149 Q15149 PLEC Plectin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 596.977905273438 3 520.590767 1558.75047 40877.4368976141 1.0031 0.00052219 146730 76.387 146730 76.387 596.977706512014 58.984 0.58182 58.984 58.636 59.218 0 40 19 3 0.783279487976283 0.00171720090742801 0.0457985218026803 7.9967E-05 1 13829 121.26 83.671 1 13032000 11681 8434.7 11613 8000.8 6938.7 13756 7054 10152 9769 2930.5 11053 7965.5 11641 8333.9 7321.6 13492 7249.2 10411 9523.9 2994.4 1 1 1 1 1 1 1 1 1 1 4514 1061 3970 4230 5017 5017 1831 SLQKLSSR 8 Phospho (STY) _SLQKLS(ph)SR_ S(0.001)LQKLS(0.777)S(0.222)R S(-28.75)LQKLS(5.43)S(-5.43)R 0 0 1 1 Q5H9B9;Q9NSY1 Q5H9B9 Q5H9B9 BMP2KL;BMP2K Putative BMP-2-inducible kinase-like protein;BMP-2-inducible protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 486.281402587891 3 333.505863 997.49576 44797.9772082869 1.1916 0.00039739 458090 152.78 458090 152.78 486.281221209506 44.173 0.5774 44.173 43.875 44.453 0 52 19 4 0.974825196247166 0.00191452176721267 0.0302100179951329 0.036971 1 10141 44.612 20.54 3 20603000 11110 30350 10491 31590 12575 10715 13014 19667 31814 1456 10511 28678 10626 32024 12662 11787 13741 19424 30594 1826.2 1 1 1 1 1 1 1 1 1 1 4515 1162 3971 4231 5018 5018 2011 SLQSLLGPSSK 11 Phospho (STY) _S(ph)LQSLLGPSSK_ S(0.995)LQS(0.005)LLGPSSK S(22.95)LQS(-22.95)LLGPS(-91.22)S(-98.27)K 0 0 1 0 P57737 P57737 P57737 CORO7 Coronin-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.311950683594 3 399.535599 1195.58497 41929.6398154847 1.1924 0.00047642 382380 152.78 382380 152.78 552.311179157122 85.911 0.5414 85.911 85.676 86.217 0 49 18 4 0.961829525018537 0.00336681131495411 0.056281738392431 4.0066E-06 1 20051 138.01 113.16 4 11152000 6584.9 1889.3 6733.3 2597 6010.1 7314.2 7358.1 5229 2937 2531.6 6231.5 1788.8 6765.2 2699.1 6156.6 7099.4 7304.1 5402.2 3085.5 2504.8 1 1 1 1 1 1 1 1 1 1 4516 735 3972 4232 5019 5019 1219 SLQTLPTDSSTFDTDTFCPPRPK 23 Phospho (STY) _S(ph)LQTLPTDSSTFDTDTFCPPRPK_ S(0.56)LQT(0.388)LPT(0.041)DS(0.009)S(0.002)T(0.001)FDTDTFCPPRPK S(1.59)LQT(-1.59)LPT(-11.31)DS(-18.17)S(-24.94)T(-30.41)FDT(-61.33)DT(-80.49)FCPPRPK 0 0 1 1 Q9NQG6 Q9NQG6 Q9NQG6 MIEF1 Mitochondrial dynamics protein MID51 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1050.51330566406 3 897.738447 2690.19351 30234.8541563285 1.8351 0.0016474 170180 152.78 170180 152.78 1050.8472159145 82.059 0.89165 82.059 81.652 82.543 0 87 30 4 0.777387496662756 0.00177654135911234 0.106530542768505 2.5851E-05 1 19211 125.62 108.25 8 14816000 4636.1 6237.9 4294.6 5820 5679.7 5360 5531.9 6861.3 7075.4 18907 4385.7 5890.3 4360.7 5993.9 5681.3 5447.6 5680.4 7394 6915.8 17962 1 1 1 1 1 1 1 1 1 1 4517 2005 3973 4233 5020 5020 3641 SLQYGAEETPLAGSYGAADSFPK 23 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)LQYGAEETPLAGSYGAADSFPK_ S(0.526)LQY(0.186)GAEET(0.279)PLAGS(0.005)Y(0.005)GAADSFPK S(2.75)LQY(-4.51)GAEET(-2.75)PLAGS(-20.6)Y(-20.34)GAADS(-39.71)FPK 1 0 1 0 Q9HB90 Q9HB90 Q9HB90 RRAGC Ras-related GTP-binding protein C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 904.42626953125 3 827.700099 2480.07847 34361.5285611676 1.9476 0.001612 92292 76.39 92294 76.391 904.424448952865 95.745 0.75141 95.745 95.479 96.231 -1.4211E-14 54 25 3 0.666885672321059 0.00318030500399216 0.112103307789771 0.010155 1 22281 46.273 35.615 6 12675000 3291 5177 3723.7 5253.5 7947.8 3942.6 9266.3 6867.2 4632.5 24219 3115.7 4890.9 3778.9 5368.4 7830.3 4092.6 9242 7504.8 4767.4 22964 1 1 1 1 1 1 1 1 1 1 4518 1978 3974 4234 5021 5021 3596 SLSAIDR 7 Phospho (STY) _SLS(ph)AIDR_ S(0.368)LS(0.632)AIDR S(-2.35)LS(2.35)AIDR 0 0 1 0 O95831 O95831 O95831 AIFM1 Apoptosis-inducing factor 1, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 535.776428222656 2 421.1944 840.374248 42927.7178394559 0.95907 0.00040396 272040 114.58 272040 114.58 535.776022087528 56.256 0.59067 56.256 55.981 56.572 0 54 19 4 0.766122325782823 0.00285198763476413 0.072318077490295 0.014418 1 13117 80.688 16.872 2 40445000 14458 24299 15874 23551 16442 14535 15898 18258 26998 3479.8 13686 22950 15909 24083 16655 15025 16513 18275 26168 3699.2 1 1 1 1 1 1 1 1 1 1 4519 267 3975 4235 5022 5022 447 SLSAPGNLLTK 11 Phospho (STY) _SLS(ph)APGNLLTK_ S(0.012)LS(0.988)APGNLLTK S(-19.15)LS(19.15)APGNLLT(-70.7)K 0 0 1 0 Q96RR4 Q96RR4 Q96RR4 CAMKK2 Calcium/calmodulin-dependent protein kinase kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.966247558594 2 590.802304 1179.59005 35396.7240835004 2.7009 0.0015957 387880 229.16 387890 229.16 819.965345791133 82.254 0.57375 82.254 81.97 82.543 0 48 19 3 0.982273749816169 0.00153223953297944 0.0551051332948098 7.5704E-07 1 19234 155.98 101.72 3 24871000 29140 8045.8 27275 8500.2 10013 26156 14313 16288 8843.7 19969 27567 7603.1 27368 8983.7 11236 25344 14213 17322 8958 19180 1 1 1 1 1 1 1 1 1 1 4520 1739 3976 4236 5023 5023 3193 SLSAPLHPEFEEVYR 15 Phospho (STY) _S(ph)LSAPLHPEFEEVYR_ S(0.542)LS(0.458)APLHPEFEEVYR S(0.73)LS(-0.73)APLHPEFEEVY(-68.72)R 0 0 1 0 Q53HC0 Q53HC0 Q53HC0 CCDC92 Coiled-coil domain-containing protein 92 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.008117675781 3 618.620503 1852.83968 38411.244806556 1.9691 0.0012181 123480 76.388 123480 76.389 695.34197295915 81.931 0.40493 81.931 81.74 82.145 0 32 13 3 0.52432895027684 0.00144629024628813 0.0391735173349377 0.0077968 1 19179 80.238 60.684 3 6420600 4641.2 7375.5 4574.4 7482.8 6094.1 4785.9 6013 7114.9 7521.4 8013.6 4391.5 6968 4628.4 7633.2 6094.8 4961.8 6165.9 7287.9 7357.3 7710.4 1 1 1 1 1 1 1 1 1 1 4521 1153 3977 4237 5024 5024 2001 SLSDNGQPGTPDPADSGGTSAK 22 Phospho (STY) _SLSDNGQPGT(ph)PDPADSGGTSAK_ SLSDNGQPGT(1)PDPADSGGTSAK S(-74.02)LS(-68.65)DNGQPGT(68.65)PDPADS(-74.02)GGT(-90.52)S(-96.37)AK 0 0 1 0 O75691 O75691 O75691 UTP20 Small subunit processome component 20 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.74462890625 3 713.633977 2137.8801 33357.5864421699 0.8532 0.00060887 214080 152.77 214080 152.78 866.743359797049 47.204 0.5282 47.204 46.828 47.356 0 61 19 5 0.98212709516091 0.00576756667184074 0.108554468731263 1.6582E-11 1 10865 178.05 160.35 6 78612000 20537 16360 20856 16188 14021 21171 12816 17892 17349 10358 19435 15453 20896 16712 14619 20977 13228 18386 16926 10167 1 1 1 1 1 1 1 1 1 1 4522 200 3978 4238 5025 5025 4345 SLSDSESDDSK 11 Unmodified _SLSDSESDDSK_ 0 0 0 0 Q13185 Q13185 Q13185 CBX3 Chromobox protein homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.408203125 2 585.243854 1168.47316 34671.5762736907 2.1568 0.0012622 391570 229.16 391570 229.16 814.406940620261 37.874 0.49501 37.874 37.568 38.063 0 49 16 4 0.911947892500669 0.00134943469705387 0.0441724246989367 1.1812E-20 1 8545 256.55 214.68 1 43760000 34558 44807 36095 45652 36515 35014 40981 39654 46118 3604.1 32707 42332 36271 46651 37098 35636 41641 39704 45287 4311.4 1 1 1 1 1 1 1 1 1 1 4523 934 3979 4239 5026 5026 SLSDSESDDSK 11 Phospho (STY) _S(ph)LSDSESDDSK_ S(0.653)LS(0.347)DSESDDSK S(2.75)LS(-2.75)DS(-43.52)ES(-93.72)DDS(-133.07)K 0 0 1 0 Q13185 Q13185 Q13185 CBX3 Chromobox protein homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.387817382813 2 625.22702 1248.43949 33778.9112928887 1.5361 0.00096042 366530 229.16 366530 229.16 854.390159773459 40.778 0.8883 40.778 40.48 41.368 0 101 30 4 0.977027002716661 0.00130413167543395 0.0169361479000529 1.1243E-29 1 9251 301.26 261.92 5 92507000 33456 35207 32687 34113 26380 32484 29213 32477 36411 5535.7 31655 33253 32886 35067 27189 32643 29798 32744 35622 5964.2 1 1 1 1 1 1 1 1 1 1 4524 934 3979 4240 5027 5027 1537;1538 SLSDSESDDSK 11 Phospho (STY) _SLS(ph)DSESDDSK_ S(0.006)LS(0.994)DSESDDSK S(-22.18)LS(22.18)DS(-40.61)ES(-101.61)DDS(-129.07)K 0 0 1 0 Q13185 Q13185 Q13185 CBX3 Chromobox protein homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.391235351563 2 625.22702 1248.43949 34095.2984358149 2.0885 0.0013058 366530 229.16 366530 229.16 854.390070429082 41.79 2.1551 41.79 41.282 43.437 0 261 74 5 1 0.0064952113633948 0.247542567513447 1.5631E-39 4 9651 346.31 277.83 5 248870000 162540 179010 166440 174600 234610 167910 236780 207700 191300 34106 153820 169080 168210 179440 234050 169170 239680 207820 190680 36922 4 4 4 4 4 4 4 4 4 4 4525 934 3979 4240 5028;5029;5030;5031 5029 1537;1538 SLSEQPVMDTATATEQAK 18 Oxidation (M),Phospho (STY) _S(ph)LSEQPVM(ox)DTATATEQAK_ SLSEQPVM(1)DTATATEQAK S(0.59)LS(0.41)EQPVMDTATATEQAK SLSEQPVM(211.03)DTATATEQAK S(1.58)LS(-1.58)EQPVMDT(-85.99)AT(-145.92)AT(-182.53)EQAK 0 1 1 0 P18615 P18615 P18615 NELFE Negative elongation factor E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 821.073669433594 3 668.294015 2001.86022 34032.8554397594 2.0694 0.001383 228610 152.78 228610 152.78 821.069927404961 57.125 0.40763 57.125 56.868 57.276 7.1054E-15 36 13 4 0.990934386726052 0.00203316696494724 0.0214213992860792 5.7769E-12 1 13352 211.03 190.59 5 17588000 12471 15442 11595 13980 17742 12881 14660 15088 16470 9918 11798 14579 11795 14425 17600 13006 15121 15348 16174 9688.1 1 1 1 1 1 1 1 1 1 1 4526 429 3980 4241 5032 5032 55 697 SLSEQPVMDTATATEQAK 18 Phospho (STY) _S(ph)LSEQPVMDTATATEQAK_ S(0.598)LS(0.402)EQPVMDTATATEQAK S(1.73)LS(-1.73)EQPVMDT(-42.65)AT(-107.9)AT(-164.6)EQAK 0 0 1 0 P18615 P18615 P18615 NELFE Negative elongation factor E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 816.074462890625 3 662.962377 1985.8653 34021.5659216298 1.7542 0.001163 230440 152.77 230440 152.78 816.072167602849 68.681 0.82096 68.681 68.329 69.15 0 114 27 6 0.966904438826524 0.0152118337552803 0.0847288004580784 1.9393E-16 1 16104 241.6 207.4 5 149400000 31835 37835 34972 41748 50929 31225 52529 47814 48367 15389 30136 35763 35233 42458 50759 32005 53279 47782 47900 15598 1 1 1 1 1 1 1 1 1 1 4527 429 3980 4242 5033 5033 697 SLSESSVIMDR 11 Oxidation (M),Phospho (STY) _SLS(ph)ESSVIM(ox)DR_ SLSESSVIM(1)DR S(0.004)LS(0.991)ES(0.003)S(0.003)VIMDR SLSESSVIM(100.31)DR S(-24.06)LS(24.06)ES(-25.79)S(-25.79)VIMDR 0 1 1 0 Q9H2Y7 Q9H2Y7 Q9H2Y7 ZNF106 Zinc finger protein 106 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.862365722656 2 660.281075 1318.5476 35092.9689047319 1.694 0.0011185 173530 114.58 173540 114.58 774.862318451773 58.127 0.41051 58.127 57.993 58.404 0 23 13 2 0.967048794831567 0.000369273950606804 0.00713618682022764 0.00072897 1 13627 100.31 84.089 4 13640000 20950 15963 18660 17172 13339 20552 14215 15695 16327 18831 19816 15086 18858 17612 13865 20424 14485 16499 16021 18094 1 1 1 1 1 1 1 1 1 1 4528 1925 3981 4243 5034 5034 207 3493 SLSESSVIMDR 11 Phospho (STY) _SLS(ph)ESSVIMDR_ S(0.004)LS(0.856)ES(0.101)S(0.039)VIMDR S(-23.49)LS(9.26)ES(-9.26)S(-13.4)VIMDR 0 0 1 0 Q9H2Y7 Q9H2Y7 Q9H2Y7 ZNF106 Zinc finger protein 106 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.866882324219 2 652.283618 1302.55268 34778.7634220837 1.9947 0.0013011 175660 114.58 175670 114.58 766.865482891948 68.594 0.69907 68.594 68.095 68.794 1.4211E-14 62 23 4 0.536050641925013 0.00100917837353561 0.0167294914225766 1.0801E-06 1 16132 147.42 103.12 4 40604000 24077 25605 22845 21721 15765 24347 16478 21574 25574 20699 22778 24166 22989 22581 16435 24291 16988 22371 24848 19990 1 1 1 1 1 1 1 1 1 1 4529 1925 3981 4244 5035 5035 3493 SLSFSDEMSSCR 12 Phospho (STY) _SLS(ph)FSDEMSSCR_ S(0.07)LS(0.465)FS(0.465)DEMSSCR S(-8.21)LS(0)FS(0)DEMS(-90.56)S(-121.8)CR 0 0 1 0 Q14153 Q14153 Q14153 FAM53B Protein FAM53B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 857.854370117188 2 743.272924 1484.5313 34757.5519117087 1.4072 0.0010459 154160 114.58 154160 114.58 857.854231940012 68.762 0.67997 68.762 68.527 69.207 0 49 22 4 0.878640507133384 0.000862389029845455 0.0153609222179911 2.9927E-23 1 16129 281.24 239.02 5 19474000 23610 11763 21580 13183 13830 24403 15940 18230 13725 40676 22334 11120 21756 13630 14521 23959 16063 19751 13637 38723 1 1 1 1 1 1 1 1 1 1 4530 990 3982 4245 5036 5036 1671;1672 SLSFSEPQQPAPAMK 15 Phospho (STY) _S(ph)LSFSEPQQPAPAMK_ S(0.479)LS(0.479)FS(0.042)EPQQPAPAMK S(0)LS(0)FS(-10.52)EPQQPAPAMK 0 0 1 0 Q9H8N7 Q9H8N7 Q9H8N7 ZNF395 Zinc finger protein 395 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.367370605469 3 566.591667 1696.75317 36007.4307995885 2.2935 0.0012995 269640 152.78 269640 152.78 719.367187436623 74.564 0.43501 74.564 74.302 74.737 0 43 14 5 0.93879484733747 0.00273803044773173 0.0477087438109639 7.7981E-05 1 17505 121.34 105.25 3 12712000 10779 6474.2 10195 6520.9 7271.3 11581 6740.3 8297.7 5890.9 26279 10198 6116.2 10262 6773.9 7543.2 11391 6863.3 9242.2 5848.6 24937 1 1 1 1 1 1 1 1 1 1 4531 1960 3983 4246 5037 5037 3568;3569 SLSGSPLK 8 Phospho (STY) _SLSGS(ph)PLK_ SLS(0.001)GS(0.999)PLK S(-44.2)LS(-32.55)GS(32.55)PLK 0 0 1 0 Q9UIG0 Q9UIG0 Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.87646484375 2 434.712426 867.410299 38693.5623956878 2.5074 0.00109 527160 229.16 527160 229.16 663.875319165876 58.294 1.0852 58.294 57.875 58.96 0 110 36 5 0.866131849350906 0.00457260071749831 0.0896421478514286 0.00039277 2 13611 130.01 34.483 3 222650000 138090 182380 130570 170190 86710 139230 99441 140560 184040 21524 130640 172220 131390 174990 90843 141000 102930 141580 178000 23520 2 2 2 2 2 2 2 2 2 2 4532 2158 3984 4247 5038;5039 5038 3885 SLSGSSPCPK 10 Phospho (STY) _SLSGSS(ph)PCPK_ SLSGS(0.049)S(0.951)PCPK S(-60.21)LS(-32.79)GS(-12.9)S(12.9)PCPK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.892028808594 2 550.228114 1098.44168 35816.9669744764 1.5945 0.00087735 416490 229.16 416490 229.16 779.392165529524 43.52 0.48535 43.52 43.272 43.757 -7.1054E-15 28 16 2 0.952147902809272 0.000196805560455729 0.00119599652563494 0.0083604 1 9968 85.821 53.603 4 31120000 33692 37597 36855 40357 26481 37636 28062 38466 39552 93475 31893 35533 36805 41225 27519 38032 28803 41368 38539 88908 1 1 1 1 1 1 1 1 1 1 4533 2226 3985 4248 5040 5040 4084;4085;4086 SLSGSSPCPK 10 Phospho (STY) _S(ph)LSGSSPCPK_ S(0.884)LS(0.116)GSSPCPK S(8.82)LS(-8.82)GS(-54.51)S(-70.73)PCPK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.392761230469 2 550.228114 1098.44168 35798.5606692022 2.1329 0.0011736 416490 229.16 416490 229.16 779.391164997459 44.691 0.55078 44.691 44.426 44.976 -7.1054E-15 57 18 4 0.636896263030063 0.00644345084499916 0.15936108496494 1.1472E-06 1 10254 165.39 131.52 4 127490000 157050 131300 168810 134770 143760 173370 143830 165660 138570 51305 148650 124060 169000 138790 147370 172060 146260 168020 136950 52144 1 1 1 1 1 1 1 1 1 1 4534 2226 3985 4248 5041 5041 4084;4085;4086 SLSGSSPCPK 10 Phospho (STY) _SLS(ph)GSSPCPK_ S(0.011)LS(0.747)GS(0.242)SPCPK S(-18.42)LS(4.89)GS(-4.89)S(-33.6)PCPK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.387878417969 2 550.228114 1098.44168 34771.9244222849 1.0976 0.00060394 416490 229.16 416490 229.16 779.390292478524 45.585 0.46831 45.585 45.379 45.848 0 40 15 4 0.958212255184187 0.000845975168323686 0.00377203757405482 1.3156E-06 2 10486 163.83 135.02 4 51823000 82988 93450 85662 88394 114660 90213 111890 101580 96767 96554 78538 88250 86453 91098 114590 90668 113610 104360 96121 93268 2 2 2 2 2 2 2 2 2 2 4535 2226 3985 4248 5042;5043 5042 4084;4085;4086 SLSGSSPCPK 10 2 Phospho (STY) _S(ph)LSGSS(ph)PCPK_ S(1)LSGS(0.078)S(0.922)PCPK S(37.53)LS(-37.53)GS(-10.75)S(10.75)PCPK 0 0 2 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 819.376098632813 2 590.211279 1178.40801 34481.7926876882 1.9661 0.0011604 388270 229.16 388270 229.16 819.373656884001 45.44 1.867 45.44 44.652 46.519 7.1054E-15 154 63 3 0.996562560221544 0.0017364407896067 0.0272449277285378 3.3696E-09 1 10556 193 156.7 6 90982000 32816 33102 35229 31560 23506 35402 23663 32361 35514 6731.9 31062 31261 35191 32561 24560 35288 24404 32781 34539 7087.8 1 1 1 1 1 1 1 1 1 1 4536 2226 3985 4249 5044 5044 4084;4085;4086 SLSHLYR 7 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)LSHLYR_ S(0.998)LS(0.002)HLYR S(28.14)LS(-28.14)HLY(-46.98)R 1 0 1 0 Q9UBB9 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 499.229461669922 2 499.228774 996.442996 45772.9387389697 0.70247 0.0003507 0.082474 4.1173E-05 0.78495 0.00039187 499.228868475573 58.506 0.43706 58.506 58.291 58.728 0 31 14 3 0.882757458706997 0.000460068959691072 0.0121729014851926 0.0083338 1 13719 51.572 46.717 3 7629100 6256.5 4082.2 5944.6 5215.9 6697.9 6158.9 5236.4 6577.2 4900.6 1932.9 5919.1 3862.8 6010.3 5301.5 6731.6 6140.1 5391.2 6639.4 4849.7 1972.2 1 1 1 1 1 1 1 1 1 1 4537 2116 3986 4250 5045 5045 3814 SLSIESLCPEDGHR 14 Phospho (STY) _S(ph)LSIESLCPEDGHR_ S(0.57)LS(0.428)IES(0.001)LCPEDGHR S(1.24)LS(-1.24)IES(-26.04)LCPEDGHR 0 0 1 0 Q92502 Q92502 Q92502 STARD8 StAR-related lipid transfer protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.962463378906 3 560.574677 1678.7022 39459.2424990372 1.846 0.0010348 136270 76.387 136270 76.388 636.961928571147 67.984 0.56729 67.984 67.705 68.272 0 46 18 3 0.955647004816854 0.00242781632069804 0.0742908820659261 4.2875E-05 1 15967 130.29 113.77 3 12073000 3751.7 5010.1 4721.7 6052.1 4455.8 3678.4 4286 5223.2 5646.1 4749.4 3553.7 4738.8 4695.2 6112.3 4536.4 3821.3 4408.2 5322.5 5513.3 4593 1 1 1 1 1 1 1 1 1 1 4538 1590 3987 4251 5046 5046 2921 SLSLGDKEISR 11 Phospho (STY) _SLS(ph)LGDKEISR_ S(0.001)LS(0.999)LGDKEISR S(-32.59)LS(32.59)LGDKEIS(-92.02)R 0 0 1 1 Q9UMZ2 Q9UMZ2 Q9UMZ2 SYNRG Synergin gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.65380859375 3 428.878025 1283.61225 41214.7698996552 1.8362 0.00078752 356220 152.78 356220 152.78 581.653159141178 62.895 1.1686 62.895 62.523 63.692 -7.1054E-15 101 39 4 0.970445367749463 0.00688840551834825 0.0971454520163172 1.8813E-07 1 14731 167.61 121.54 3 77960000 19685 13319 21134 11091 13030 20449 13826 15056 12349 2515.3 18632 12570 21100 11674 13711 20017 13995 15387 12247 2716.9 1 1 1 1 1 1 1 1 1 1 4539 2200 3988 4252 5047 5047 3987 SLSNATIINEEVLNAMLK 18 Phospho (STY) _S(ph)LSNATIINEEVLNAMLK_ S(0.478)LS(0.478)NAT(0.044)IINEEVLNAMLK S(0)LS(0)NAT(-10.39)IINEEVLNAMLK 0 0 1 0 P61011 P61011 P61011 SRP54 Signal recognition particle 54 kDa protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.78564453125 3 680.674279 2039.00101 34061.0685885584 1.482 0.0010088 224450 152.78 224450 152.78 833.784426160696 102.29 0.17575 102.29 102.22 102.39 0 12 5 4 0.574045192764522 0.000940049798985229 0.0158552476588436 4.1031E-05 1 24106 116.74 93.177 3 38064000 8005 8012.7 6003 9449.3 9610.4 8613.6 9839.3 12016 8458.1 36832 7567.3 7577.5 6204.4 9601.1 9541.6 8783.1 9966.8 13031 8404.2 34960 1 1 1 1 1 1 1 1 1 1 4540 746 3989 4253 5048 5048 1231;1232 SLSPDEER 8 Phospho (STY) _SLS(ph)PDEER_ S(0.001)LS(0.999)PDEER S(-28.52)LS(28.52)PDEER 0 0 1 0 Q5UIP0 Q5UIP0 Q5UIP0 RIF1 Telomere-associated protein RIF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 621.285339355469 2 506.702786 1011.39102 40076.7512066113 1.6299 0.00082588 226130 114.58 226130 114.58 621.284320638358 36.34 0.60202 36.34 36.026 36.628 0 49 20 4 0.996132228031242 0.00256183767753019 0.0867691918405411 3.0014E-05 1 8181 142.92 84.003 2 25642000 21718 29831 21206 29678 20417 21960 19456 23903 34072 6183.3 20548 28179 21372 30358 20766 22392 20251 24088 32999 6375.5 1 1 1 1 1 1 1 1 1 1 4541 1197 3990 4254 5049 5049 2093 SLSPGGAALGYR 12 Phospho (STY) _SLS(ph)PGGAALGYR_ S(0.031)LS(0.969)PGGAALGYR S(-14.97)LS(14.97)PGGAALGY(-169.69)R 0 0 1 0 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.373413085938 2 614.789727 1227.5649 36704.9602135618 2.0772 0.001277 186370 114.58 186380 114.58 729.371518830694 63.397 0.7886 63.397 63.05 63.839 -7.1054E-15 111 26 6 0.97381153790375 0.00568870006711267 0.20389600962401 8.8581E-23 1 14839 267.93 179.77 3 807280000 25379 27760 25725 27832 19338 24190 20498 23908 27690 7952.7 24016 26224 25808 28514 20025 24421 21006 24232 27017 8041.8 1 1 1 1 1 1 1 1 1 1 4542 1755 3991 4255 5050 5050 3227 SLSPGKENVSALDMEK 16 Oxidation (M),Phospho (STY) _SLS(ph)PGKENVSALDM(ox)EK_ SLSPGKENVSALDM(1)EK S(0.01)LS(0.99)PGKENVSALDMEK SLSPGKENVSALDM(178.22)EK S(-19.84)LS(19.84)PGKENVS(-48.71)ALDMEK 0 1 1 1 Q9H307 Q9H307 Q9H307 PNN Pinin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.439758300781 3 600.941025 1799.80125 33601.597659507 1.8904 0.001136 381340 229.16 381340 229.16 830.438496179821 64.588 0.7861 64.588 64.152 64.938 0 110 26 6 0.996490836937884 0.0126939797744668 0.136588985087666 2.6094E-10 1 15163 178.22 145.85 3 96671000 51766 56651 59257 54217 51093 54382 55177 59943 60795 10431 49012 53502 59145 55820 52395 54591 56123 60226 59748 11209 1 1 1 1 1 1 1 1 1 1 4543 1926 3992 4256 5051 5051 209 3497;3498 SLSPGKENVSALDMEK 16 Phospho (STY) _S(ph)LSPGKENVSALDMEK_ S(0.508)LS(0.492)PGKENVSALDMEK S(0.15)LS(-0.15)PGKENVS(-55.72)ALDMEK 0 0 1 1 Q9H307 Q9H307 Q9H307 PNN Pinin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.3330078125 4 446.958859 1783.80633 39360.3952870736 1.7225 0.00076988 384540 171.87 384540 171.87 619.081955095494 72.472 0.5582 72.472 72.135 72.693 1.4211E-14 72 18 5 0.776015814962582 0.00269409599075783 0.0183539916509605 2.9966E-07 1 16984 161.22 142.81 3 56784000 11964 11635 13829 12490 13337 12810 15007 13536 14960 5228.7 11328 10996 13815 12777 13588 12845 15194 13707 14763 5236.8 1 1 1 1 1 1 1 1 1 1 4544 1926 3992 4257 5052 5052 3497;3498 SLSPGVSR 8 Phospho (STY) _SLS(ph)PGVSR_ S(0.004)LS(0.996)PGVS(0.001)R S(-24.32)LS(24.32)PGVS(-32.98)R 0 0 1 0 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.289367675781 2 441.707675 881.400797 41168.3729673122 1.0318 0.00045577 259410 114.58 259410 114.58 556.288970890564 40.393 0.44763 40.393 40.092 40.539 7.1054E-15 37 14 3 0.990716548093932 0.00152592803178356 0.0283057157884642 0.0027296 1 9166 99.257 44.193 3 44489000 28211 21982 29820 21605 17235 32922 18818 22294 23558 4252.9 26701 20763 29784 22388 18260 32369 19208 22903 23043 4520.6 1 1 1 1 1 1 1 1 1 1 4545 2180 3993 4258 5053 5053 3933 SLSPILPGR 9 Phospho (STY) _S(ph)LSPILPGR_ S(0.961)LS(0.039)PILPGR S(13.97)LS(-13.97)PILPGR 0 0 1 0 Q6ZSZ5 Q6ZSZ5 Q6ZSZ5 ARHGEF18 Rho guanine nucleotide exchange factor 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.849975585938 2 510.2679 1018.52125 39688.0275137576 1.2798 0.00065305 224550 114.58 224550 114.58 624.849341596971 75.868 1.4753 75.868 75.232 76.707 -1.4211E-14 143 50 4 0.989840732504506 0.00300485823014648 0.111386883926807 0.0062807 1 17748 90.108 51.086 2 87513000 16729 7296.9 13927 6752.1 9326.9 13402 8409.9 11433 7091.5 5134.4 15820 6890 14127 7073 9722.4 13122 8568.5 11700 7053.1 5099.3 1 1 1 1 1 1 1 1 1 1 4546 1299 3994 4259 5054 5054 2319;2320 SLSPKPR 7 2 Phospho (STY) _S(ph)LS(ph)PKPR_ S(1)LS(1)PKPR S(51.28)LS(51.28)PKPR 0 0 2 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.86865234375 2 472.70375 943.392948 37377.4345271712 2.2844 0.0010798 484790 229.16 484790 229.16 701.86660989852 41.805 2.2994 41.805 41.111 43.41 0 187 79 3 0.981845623465198 0.000898093899206992 0.0166268774383423 0.042939 1 9427 51.276 15.831 1 35517000 24946 22555 24616 22212 22597 26277 27839 26016 24793 9010.2 23604 21305 24791 22893 23122 26171 28003 26378 24592 9086.3 1 1 1 1 1 1 1 1 1 1 4547 963 3995 4260 5055 5055 1628;1629 SLSPKPR 7 2 Phospho (STY) _S(ph)LS(ph)PKPR_ S(1)LS(1)PKPR S(79.15)LS(79.15)PKPR 0 0 2 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 468.247406005859 3 315.471592 943.392948 45906.6031530229 0.58039 0.0001831 484280 152.78 484280 152.78 468.246891023337 41.751 2.0378 41.751 41.052 43.09 0 163 70 3 0.857740199940283 0.00198308420383434 0.0370859033266682 0.010389 1 9631 79.148 42.724 1 23566000 12972 16134 15309 14737 15030 15831 13222 14772 16128 1697.4 12283 15234 15274 15234 15246 15809 13626 14909 15790 1940.1 1 1 1 1 1 1 1 1 1 1 4548 963 3995 4260 5056 5056 1628;1629 SLSPNHNTLQTLK 13 Phospho (STY) _SLS(ph)PNHNTLQTLK_ S(0.092)LS(0.908)PNHNTLQTLK S(-9.93)LS(9.93)PNHNT(-37.33)LQT(-128.73)LK 0 0 1 0 O75592 O75592 O75592 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.364074707031 3 511.587134 1531.73957 38531.9853035058 1.5449 0.00079035 298630 152.78 298630 152.78 664.362297565912 62.433 0.5224 62.433 62.181 62.703 -7.1054E-15 50 17 4 0.985059775620233 0.00326412373390342 0.0765639467179331 8.8349E-11 1 14662 190.55 116.16 4 21322000 8837.3 7921.7 9601 7968.3 9593.2 15787 30608 23388 8906.4 4541.2 8365.2 7483.6 9663.3 8304.4 10012 15579 29553 23302 9708.4 4817.3 1 1 1 1 1 1 1 1 1 1 4549 194 3996 4261 5057 5057 341 SLSPSHLTEDR 11 Phospho (STY) _SLS(ph)PSHLTEDR_ SLS(0.999)PS(0.001)HLTEDR S(-44.49)LS(29.25)PS(-29.25)HLT(-103.96)EDR 0 0 1 0 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 517.5859375 3 441.197646 1320.57111 43477.1810617622 1.1084 0.00048902 173140 76.388 173140 76.389 517.585306956157 49.811 0.78767 49.811 49.283 50.07 0 81 26 5 0.920284375653521 0.00312606376287349 0.0875992929181745 4.3249E-15 1 11542 228.38 188.99 4 34569000 9087.3 8541.5 7421.2 8914.3 5848.7 9349.2 8678.7 10049 8395 1597.6 8592.7 8071 7554.6 9137.1 6067.9 9363.5 8690.5 10100 8295.4 1736.9 1 1 1 1 1 1 1 1 1 1 4550 1183 3997 4262 5058 5058 2068 SLSPSPLGSSAASTALER 18 Phospho (STY) _SLS(ph)PSPLGSSAASTALER_ SLS(0.6)PS(0.396)PLGS(0.003)S(0.001)AASTALER S(-33.58)LS(1.81)PS(-1.81)PLGS(-23.51)S(-28.49)AAS(-49.6)T(-60.56)ALER 0 0 1 0 O14526 O14526 O14526 FCHO1 F-BAR domain only protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1020.513671875 2 905.932763 1809.85097 32485.587753675 1.6626 0.0015062 126480 114.58 126480 114.58 1020.51527637896 72.605 0.35092 72.605 72.398 72.749 0 16 11 2 0.910249842447095 0.00045668475150815 0.0161469936915986 3.8189E-07 1 17044 142.55 101.06 7 6318700 7220.2 6056.9 8966.1 5645.5 3781.7 8800 4937.9 8458.4 5471.6 39727 6838.7 5719.4 8866.7 5872.4 4160.6 8750.4 4985.5 9694.7 5376.2 37604 1 1 1 1 1 1 1 1 1 1 4551 58 3998 4263 5059 5059 95 SLSPVAAPPLREPR 14 Phospho (STY) _SLS(ph)PVAAPPLREPR_ S(0.002)LS(0.998)PVAAPPLREPR S(-27)LS(27)PVAAPPLREPR 0 0 1 1 Q8NDT2 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 600.331481933594 3 523.94314 1568.80759 40526.2675241444 1.0319 0.00054064 145790 76.388 145800 76.388 600.331081777749 61.676 0.55824 61.676 61.391 61.949 7.1054E-15 66 18 5 0.918011932726883 0.00508699379455597 0.0684215501911983 3.1487E-05 1 14484 132.5 104.22 2 50155000 13742 13024 16007 12231 16215 15475 14492 15621 14049 4751.5 13012 12299 15987 12659 16418 15378 14822 15807 13881 4835.6 1 1 1 1 1 1 1 1 1 1 4552 1508 3999 4264 5060 5060 2771 SLSQPTPPPMPILSQSEAK 19 Phospho (STY) _S(ph)LSQPTPPPMPILSQSEAK_ S(0.809)LS(0.191)QPTPPPMPILSQSEAK S(6.26)LS(-6.26)QPT(-34.27)PPPMPILS(-143.56)QS(-153.19)EAK 0 0 1 0 Q9UPN3 Q9UPN3 Q9UPN3 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.785461425781 3 696.674279 2087.00101 34492.9260771847 1.9712 0.0013733 219290 152.78 219290 152.78 849.783176884651 88.85 0.4605 88.85 88.536 88.997 0 38 15 3 0.984717053952178 0.00250021350222296 0.0267951463931715 3.8628E-08 1 20713 169.08 150.05 5 8331300 3960.1 7031.4 3237.1 6268.7 7318.1 3886.5 7108.9 6438.2 8147 21420 3744.6 6638 3350.7 6444.8 7183.5 4074.3 7274.7 7004.5 7994.6 20318 1 1 1 1 1 1 1 1 1 1 4553 2211 4000 4265 5061 5061 4003 SLSSGSNFCSEQK 13 Phospho (STY) _SLS(ph)SGSNFCSEQK_ S(0.134)LS(0.732)S(0.134)GSNFCSEQK S(-7.37)LS(7.37)S(-7.37)GS(-41.56)NFCS(-151.59)EQK 0 0 1 0 O95243 O95243 O95243 MBD4 Methyl-CpG-binding domain protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.975341796875 3 504.200839 1509.58069 38412.773643856 1.6102 0.00081187 303000 152.77 303000 152.78 657.309658751329 55.099 0.43931 55.099 54.924 55.364 -7.1054E-15 34 14 3 0.805529135979542 0.0014623453870196 0.008668464277901 1.2703E-10 1 12865 180.56 153.23 5 14583000 23412 16663 26931 15947 13509 25886 12689 18302 14498 7701.5 22167 15737 26750 16578 14492 25423 13006 18884 14229 7675.4 1 1 1 1 1 1 1 1 1 1 4554 238 4001 4266 5062 5062 409 SLSSPTVTLSAPLEGAK 17 Phospho (STY) _S(ph)LSSPTVTLSAPLEGAK_ S(0.592)LS(0.385)S(0.023)PTVTLSAPLEGAK S(1.87)LS(-1.87)S(-14.18)PT(-34.88)VT(-87.1)LS(-110.94)APLEGAK 0 0 1 0 Q96PU5 Q96PU5 Q96PU5 NEDD4L E3 ubiquitin-protein ligase NEDD4-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.741455078125 3 579.960525 1736.85975 32973.2618198483 1.8388 0.0010664 263430 152.78 263430 152.78 732.738396290644 86.885 0.43722 86.885 86.676 87.113 1.4211E-14 52 14 5 0.978707675592907 0.00629119113970009 0.0862023042496272 1.3845E-07 1 20252 163.8 144.22 6 74913000 17192 20201 15835 20131 27741 17415 29071 20984 19725 9924.5 16263 19083 16171 20630 27459 17641 29272 21209 19860 9830.7 1 1 1 1 1 1 1 1 1 1 4555 1725 4002 4267 5063 5063 3173 SLSSSLDDTEVKK 13 Phospho (STY) _SLS(ph)SSLDDTEVKK_ S(0.035)LS(0.787)S(0.151)S(0.028)LDDTEVKK S(-13.58)LS(7.18)S(-7.18)S(-14.55)LDDT(-39.47)EVKK 0 0 1 1 O95292 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.064758300781 3 496.899155 1487.67563 NaN NaN NaN NaN NaN NaN NaN NaN 67.328 1 67.328 66.828 67.828 0 NaN NaN NaN 0.047535 1 15810 49.049 26.516 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4556 240 4003 4268 5064 5064 412 SLSSSPDKR 9 Phospho (STY) _SLSSS(ph)PDKR_ S(0.098)LS(0.098)S(0.061)S(0.743)PDKR S(-8.8)LS(-8.8)S(-10.83)S(8.8)PDKR 0 0 1 1 Q9BVI0 Q9BVI0 Q9BVI0 PHF20 PHD finger protein 20 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.603607177734 3 352.828894 1055.46485 43942.5424146949 0.82764 0.00029201 433000 152.77 433000 152.78 505.603729390245 33.422 0.4744 33.422 33.256 33.73 0 19 16 2 0.483748082332894 0.00113658077787498 0.00305648672106182 0.025012 1 7489 56.087 13.751 4 23025000 21662 23508 24956 22788 21725 25011 22060 24021 25362 4422.8 20510 22203 24901 23477 22245 24966 22529 24267 24885 4720.5 1 1 1 1 1 1 1 1 1 1 4557 1843 4004 4269 5065 5065 3370 SLSSSPQAQPPRPAELSDEEVAELFQR 27 Phospho (STY) _SLSSS(ph)PQAQPPRPAELSDEEVAELFQR_ S(0.001)LS(0.023)S(0.114)S(0.862)PQAQPPRPAELSDEEVAELFQR S(-29.19)LS(-15.73)S(-8.77)S(8.77)PQAQPPRPAELS(-58.18)DEEVAELFQR 0 0 1 1 Q4V328 Q4V328 Q4V328 GRIPAP1 GRIP1-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1093.20336914063 3 1016.81518 3047.42372 29768.773240179 1.6858 0.0017141 75124 76.388 75126 76.389 1093.53876016552 93.271 0.35837 93.271 93.06 93.418 1.4211E-14 28 11 4 0.812998491342386 0.00163687688371721 0.0593942854148139 2.6423E-05 1 21709 129.88 115.42 5 13076000 4288.9 4618.8 4815.7 3602.7 4250.9 3909.8 5589.4 4870.4 3940.5 36677 4060.3 4357.4 4814.5 3766.1 4364.6 3986.4 5580.1 5953.3 3958 34648 1 1 1 1 1 1 1 1 1 1 4558 1143 4005 4270 5066 5066 1988 SLSTEVEPK 9 Phospho (STY) _SLST(ph)EVEPK_ SLS(0.028)T(0.972)EVEPK S(-44.84)LS(-15.46)T(15.46)EVEPK 0 0 1 0 Q8IWB9 Q8IWB9 Q8IWB9 TEX2 Testis-expressed sequence 2 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.909851074219 2 535.244287 1068.47402 35865.229228744 1.8782 0.0010053 428150 229.16 428150 229.16 764.406900873869 58.108 0.47438 58.108 57.875 58.349 0 51 15 4 0.960588376403998 0.000854053172951788 0.00970347447192874 0.00044188 1 13576 119.68 68.235 3 56004000 22687 14388 22496 18053 29510 20570 29480 22762 18104 10323 21467 13613 22749 18353 29522 20553 29698 23058 18346 10248 1 1 1 1 1 1 1 1 1 1 4559 1414 4006 4271 5067 5067 4653 SLSVPDSGR 9 Phospho (STY) _SLS(ph)VPDSGR_ S(0.297)LS(0.703)VPDSGR S(-3.74)LS(3.74)VPDS(-43.52)GR 0 0 1 0 O75420 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.801879882813 2 499.221146 996.42774 39353.8477038976 0.86054 0.0004296 229520 114.58 229520 114.58 613.800841377282 48.645 0.81218 48.645 48.184 48.997 7.1054E-15 61 27 3 0.983343396912288 0.00201745302677664 0.0258205453594638 0.00010977 1 11255 133.12 107.1 3 87231000 34216 36746 35364 37820 30205 34324 32736 33907 37882 5409.1 32382 34719 35485 38711 30997 34565 33342 34190 37160 5878 1 1 1 1 1 1 1 1 1 1 4560 185 4007 4272 5068 5068 321 SLSVPVDLSR 10 Phospho (STY) _SLS(ph)VPVDLSR_ SLS(1)VPVDLSR S(-34.69)LS(34.69)VPVDLS(-68.78)R 0 0 1 0 Q9NYF3 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.369079589844 2 576.786653 1151.55875 37769.8572599854 1.5747 0.00090826 198650 114.58 198660 114.58 691.368073968431 76.276 0.58276 76.276 76.004 76.587 1.4211E-14 47 19 3 0.751256195663481 0.00418240280968913 0.251458595925464 2.2402E-06 1 17900 155.24 111.15 3 21208000 19927 16247 18491 16659 11429 18334 11302 15722 17329 11566 18850 15350 18615 17107 12019 18291 11675 16220 16843 11254 1 1 1 1 1 1 1 1 1 1 4561 2071 4008 4273 5069 5069 3742 SLSYEEPR 8 Phospho (STY) _SLS(ph)YEEPR_ S(0.023)LS(0.977)YEEPR S(-16.36)LS(16.36)Y(-33.7)EEPR 0 0 1 0 Q8IZD4 Q8IZD4 Q8IZD4 DCP1B mRNA-decapping enzyme 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.302307128906 2 530.720979 1059.42741 38484.505676319 1.4909 0.00079125 215900 114.58 215900 114.58 645.301780931977 47.775 0.49656 47.775 47.541 48.038 0 64 16 6 0.86233336272297 0.00548080736927879 0.166688062819461 0.00085166 1 11065 118.91 90.181 3 82936000 79158 46159 74969 44594 59728 76317 56034 60655 44398 15159 74888 43596 75536 46393 61448 74913 56896 61905 44301 15677 1 1 1 1 1 1 1 1 1 1 4562 1443 4009 4274 5070 5070 2677 SLSYSPVER 9 Phospho (STY) _SLSYS(ph)PVER_ SLS(0.001)YS(0.999)PVER S(-40.85)LS(-30.98)Y(-70.56)S(30.98)PVER 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.831787109375 2 559.249904 1116.48525 37923.2981495297 1.1158 0.00062399 204880 114.58 204880 114.58 673.831389141355 54.376 0.66789 54.376 54.06 54.728 0 53 22 3 0.855511290191362 0.00237113796046997 0.0169704682521319 2.9159E-06 1 12705 163.83 106.28 4 86957000 51511 57569 45261 53805 21050 59125 20513 46547 59201 6455.4 48719 54362 45638 55561 22820 58881 21966 47372 56773 7155.8 1 1 1 1 1 1 1 1 1 1 4563 2226 4010 4275 5071 5071 4087 SLTAHSLLPLAEK 13 Phospho (STY) _S(ph)LTAHSLLPLAEK_ S(0.848)LT(0.152)AHSLLPLAEK S(7.47)LT(-7.47)AHS(-34.94)LLPLAEK 0 0 1 0 Q86VI3 Q86VI3 Q86VI3 IQGAP3 Ras GTPase-activating-like protein IQGAP3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.031921386719 3 487.256725 1458.74835 39796.3842756149 2.0565 0.0010021 313540 152.77 313540 152.78 640.031509377396 87.272 0.5006 87.272 87.057 87.557 0 40 16 3 0.977758675042687 0.00238421226477979 0.0226236921919914 5.9903E-05 1 20371 125.67 102.07 3 18113000 7727.9 8145.4 7849 7815.9 4392.6 7985.8 5761 7205.4 9146.7 5459.5 7313 7692.8 7856.8 8047.9 4684.3 7997.5 5891.2 7422.3 8881.5 5307.5 1 1 1 1 1 1 1 1 1 1 4564 1379 4011 4276 5072 5072 2494 SLTNSHLEK 9 Phospho (STY) _S(ph)LTNSHLEK_ S(1)LTNSHLEK S(36.94)LT(-36.94)NS(-67.75)HLEK 0 0 1 0 Q9H2H9 Q9H2H9 Q9H2H9 SLC38A1 Sodium-coupled neutral amino acid transporter 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 522.947387695313 3 370.172661 1107.49615 42924.4192598678 0.749 0.00027726 412710 152.78 412710 152.78 522.948188319015 47.822 0.70357 47.822 47.481 48.184 0 85 23 5 0.992458023185618 0.0040084926557905 0.0385200694563919 2.4203E-09 1 11036 186.51 122.56 3 203750000 41030 17183 40075 18698 8021.2 39289 9257.4 21978 17997 1908.3 38821 16241 40018 19437 10058 38249 9603.2 22774 17387 2305.6 1 1 1 1 1 1 1 1 1 1 4565 1919 4012 4277 5073 5073 3484;3485 SLTNSHLEK 9 2 Phospho (STY) _S(ph)LTNS(ph)HLEK_ S(0.995)LT(0.414)NS(0.591)HLEK S(20.35)LT(-1.56)NS(1.56)HLEK 0 0 2 0 Q9H2H9 Q9H2H9 Q9H2H9 SLC38A1 Sodium-coupled neutral amino acid transporter 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.902954101563 2 594.738519 1187.46248 34281.0132943897 2.8472 0.0016934 385320 229.16 385320 229.16 823.901011159631 51.222 0.78245 51.222 50.907 51.69 0 45 26 2 0.975684549063283 0.000821577977042016 0.0232059076007288 0.0071855 1 11894 97.631 54.248 3 10629000 15285 18169 14262 17752 11579 14286 11945 14356 19755 8930.8 14459 17161 14388 18197 11922 14492 12355 14666 19161 8741.6 1 1 1 1 1 1 1 1 1 1 4566 1919 4012 4278 5074 5074 3484;3485 SLTPPPSSTESK 12 Phospho (STY) _SLT(ph)PPPSSTESK_ S(0.009)LT(0.989)PPPS(0.002)STESK S(-20.24)LT(20.24)PPPS(-27.88)S(-35.47)T(-43.02)ES(-74.97)K 0 0 1 0 Q9UGU0 Q9UGU0 Q9UGU0 TCF20 Transcription factor 20 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 884.958984375 2 655.797415 1309.58028 NaN NaN NaN NaN NaN NaN NaN NaN 48.544 1 48.544 48.044 49.044 0 NaN NaN NaN 6.2791E-07 1 11260 147.26 113.18 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4567 2140 4013 4279 5075 5075 4804 SLTRSPPAIR 10 2 Phospho (STY) _S(ph)LTRS(ph)PPAIR_ S(0.858)LT(0.165)RS(0.977)PPAIR S(7.71)LT(-7.71)RS(15.59)PPAIR 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.874267578125 2 629.291253 1256.56795 36229.0496489195 1.8879 0.001188 182080 114.58 182080 114.58 743.872625653895 49.986 0.99746 49.986 49.396 50.394 0 75 33 3 0.980135977827827 0.00085037882345436 0.0331770688082612 0.05146 1 11529 45.654 23.012 3 21252000 17800 14581 17566 15276 15242 17748 15079 15435 14525 12888 16842 13778 17673 15683 15602 17674 15342 15961 14355 12493 1 1 1 1 1 1 1 1 1 1 4568 2226 4014 4280 5076 5076 4088;4089 SLTSSLENIFSR 12 Phospho (STY) _SLTSS(ph)LENIFSR_ SLT(0.005)S(0.055)S(0.939)LENIFSR S(-49.38)LT(-22.36)S(-12.29)S(12.29)LENIFS(-118.59)R 0 0 1 0 O60343 O60343 O60343 TBC1D4 TBC1 domain family member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 831.920288085938 2 717.337239 1432.65992 34241.4339393264 1.8267 0.0013104 159730 114.58 159730 114.58 831.918887692799 97.404 0.72021 97.404 97.068 97.788 -1.4211E-14 80 24 5 0.735548275623984 0.00803104153597771 0.254127033231269 8.2771E-16 1 22620 213.94 189.44 5 59222000 15616 12018 14672 11462 55904 15107 58727 29641 10560 28088 14773 11350 15338 11862 54292 15215 58325 30015 12463 27134 1 1 1 1 1 1 1 1 1 1 4569 145 4015 4281 5077 5077 250 SLTYDEVISFVPPPLDQEEMES 22 Unmodified _SLTYDEVISFVPPPLDQEEMES_ 0 0 0 0 Q16539 Q16539 Q16539 MAPK14 Mitogen-activated protein kinase 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 919.114318847656 3 842.392844 2524.1567 34142.2128239122 1.4095 0.0011874 90679 76.387 90680 76.388 919.113640475874 102 0.17027 102 101.9 102.07 -1.4211E-14 13 5 4 0.944125115532364 0.000330782388728984 0.0125186245253151 0.011114 1 24031 75.55 58.67 1 13400000 4010.4 4265.4 5338.2 5200.3 3796.8 5065.6 4990.4 7603.6 5136.6 54291 3799.8 4034.7 5282.3 5280.3 3961 5217.6 5026.5 9164.5 5062.1 51297 1 1 1 1 1 1 1 1 1 1 4570 1105 4016 4282 5078 5078 SLVGSWLK 8 Phospho (STY) _SLVGS(ph)WLK_ S(0.001)LVGS(0.999)WLK S(-32.47)LVGS(32.47)WLK 0 0 1 0 Q6ICG6 Q6ICG6 Q6ICG6 KIAA0930 Uncharacterized protein KIAA0930 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.407348632813 2 485.243893 968.473233 36903.7745065793 2.4437 0.0011858 472260 229.16 472260 229.16 714.40677519848 98.128 0.98621 98.128 97.617 98.603 1.4211E-14 90 33 5 0.776055069514605 0.0198679538655299 1 0.0012739 1 22782 108.7 64.379 2 50581000 96263 6324.7 103510 5420.3 12032 114380 17325 43818 8378.9 65224 91116 5969.6 102700 7371.3 17678 109020 17136 48653 8646.9 62430 1 1 1 1 1 1 1 1 1 1 4571 1240 4017 4283 5079 5079 2184 SLVGTPYWMAPELISR 16 Phospho (STY) _S(ph)LVGTPYWMAPELISR_ S(1)LVGTPYWMAPELISR S(45.23)LVGT(-45.23)PY(-128.73)WMAPELIS(-180.86)R 0 0 1 0 O96013 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1065.04089355469 2 950.457362 1898.90017 30821.0081103627 1.0829 0.0010292 120560 114.58 120560 114.58 1065.54191413499 101.39 0.14153 101.39 101.33 101.47 0 13 4 4 0.695021037466446 0.00417596861120073 0.0889482461287908 1.8945E-23 1 23825 284.74 242.66 4 72221000 19638 49978 19714 42667 24498 17301 30843 33964 41830 87001 18583 47171 19917 43848 24678 18847 31392 36044 40808 82708 1 1 1 1 1 1 1 1 1 1 4572 274 4018 4284 5080 5080 459 SLVISPPVR 9 Phospho (STY) _S(ph)LVISPPVR_ S(1)LVISPPVR S(35.73)LVIS(-35.73)PPVR 0 0 1 0 Q9UBW5 Q9UBW5 Q9UBW5 BIN2 Bridging integrator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.865356445313 2 524.28355 1046.55255 39442.4873862795 1.9766 0.0010363 218550 114.58 218550 114.58 638.864832923532 72.818 1.1913 72.818 72.165 73.356 0 115 40 4 0.992844615796403 0.00115527548827663 0.0301084574592667 0.00059438 1 17007 106.4 78.001 2 60821000 13065 6636.7 14843 7946.6 14127 13055 14665 11904 7206.9 5872.4 12370 6277 14836 8161.5 14379 12854 14697 12162 7427.4 5805.1 1 1 1 1 1 1 1 1 1 1 4573 2131 4020 4285 5081 5081 3833 SLVQDSLSTNSSDLVAPSPDAFR 23 Phospho (STY) _SLVQDSLSTNSSDLVAPS(ph)PDAFR_ SLVQDSLSTNSSDLVAPS(1)PDAFR S(-128.77)LVQDS(-107.11)LS(-88.04)T(-83.42)NS(-64.81)S(-43.95)DLVAPS(43.95)PDAFR 0 0 1 0 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 905.771362304688 3 829.386402 2485.13738 32880.7119424818 2.1045 0.0017454 92102 76.388 92104 76.39 906.107768688071 90.048 0.63836 90.048 89.781 90.42 0 73 21 5 0.951079620160093 0.0044531876401001 0.107335698865065 1.4322E-12 1 20967 198.21 179.43 7 32340000 3792.5 4403.3 3985.2 3544.6 3686 3910.3 4341.7 5320.5 4316.5 50692 3589.4 4154.8 3999.4 3697.8 3767.5 4016.3 4387.3 6809.6 4260.1 47855 1 1 1 1 1 1 1 1 1 1 4574 911 4021 4286 5082 5082 1503 SLYASSPGGVYATR 14 Phospho (STY) _SLYASS(ph)PGGVYATR_ SLYAS(0.148)S(0.852)PGGVYATR S(-40.51)LY(-38.28)AS(-7.59)S(7.59)PGGVY(-71.81)AT(-67.61)R 0 0 1 0 P08670 P08670 P08670 VIM Vimentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.9521484375 3 503.564218 1507.67082 40730.2630281499 1.4593 0.00073484 151690 76.387 151700 76.388 579.951630520794 60.98 0.61711 60.98 60.685 61.302 -7.1054E-15 68 20 5 0.882177090592182 0.00344752149176684 0.0427389277915468 0.0024916 1 14272 94.882 72.304 6 55718000 8550.5 11365 8617.5 9614.9 8077.4 8569.8 9087.9 9423.8 8775.9 2912.2 8091.3 10726 8668.7 9962.3 8242.9 8652.8 9193.6 9507.4 8672.5 2960.3 1 1 1 1 1 1 1 1 1 1 4575 336 4022 4287 5083 5083 553 SLYESFVSSSDR 12 Phospho (STY) _S(ph)LYESFVSSSDR_ S(0.69)LY(0.009)ES(0.301)FVSSSDR S(3.61)LY(-18.89)ES(-3.61)FVS(-55.07)S(-68.19)S(-80.48)DR 0 0 1 0 P18615 P18615 P18615 NELFE Negative elongation factor E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.886596679688 2 728.803229 1455.5919 34398.2469652164 2.0114 0.0014659 157220 114.58 157220 114.58 843.384624641346 79.525 0.53828 79.525 79.279 79.818 0 32 18 2 0.536290002835827 0.000978141509513871 0.0735488874357888 0.00014373 1 18627 117.63 95.584 6 12206000 7944.2 10770 9852.1 9685.3 9789.1 9228.1 10969 10977 10244 19015 7524.4 10168 9812.3 10003 9953.7 9328 11089 11516 10139 18159 1 1 1 1 1 1 1 1 1 1 4576 429 4023 4288 5084 5084 698 SLYLSAK 7 2 Phospho (STY) _S(ph)LY(ph)LSAK_ S(0.937)LY(0.97)LS(0.094)AK S(11.56)LY(14.74)LS(-11.56)AK 0 0 2 0 Q86WG5 Q86WG5 Q86WG5 SBF2 Myotubularin-related protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.357116699219 2 471.192684 940.370816 36753.0007827108 1.7708 0.00083438 486350 229.16 486350 229.16 700.356758711172 39.742 0.61075 39.742 39.452 40.063 0 71 20 5 0.997682666032181 0.00362844383488126 0.0729589567263373 0.030028 1 8997 57.047 16.98 3 128740000 19658 33663 19337 33435 84647 19521 84920 45892 33406 3600.8 18600 31799 20289 34120 81999 20525 85018 45119 35147 4452.7 1 1 1 1 1 1 1 1 1 1 4577 1389 4024 4289 5085 5085 2527;4883 SMDAMSSPTKTETVK 15 Phospho (STY) _SMDAMSS(ph)PTKTETVK_ SMDAMS(0.028)S(0.944)PT(0.028)KTETVK S(-74.26)MDAMS(-15.24)S(15.24)PT(-15.24)KT(-49.27)ET(-74.83)VK 0 0 1 1 Q9UPN3 Q9UPN3 Q9UPN3 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.076354980469 3 564.912189 1691.71474 35389.1349429594 2.1793 0.0012311 405660 229.16 405660 229.16 794.074752878175 56.915 0.55962 56.915 56.541 57.101 0 53 18 5 0.868112767888832 0.00287736786990142 0.0183251361585147 1.3205E-10 1 13296 187.73 159.65 6 30630000 26017 41595 25494 37824 30529 23595 33068 31712 47004 23779 24617 39272 25767 38838 30732 24432 33920 32211 45788 23124 1 1 1 1 1 1 1 1 1 1 4578 2211 4025 4290 5086 5086 4004 SMDSSDLSDGAVTLQEYLELK 21 Oxidation (M),Phospho (STY) _SM(ox)DSS(ph)DLSDGAVTLQEYLELK_ SM(1)DSSDLSDGAVTLQEYLELK S(0.254)MDS(0.322)S(0.41)DLS(0.014)DGAVTLQEYLELK SM(122.49)DSSDLSDGAVTLQEYLELK S(-2.09)MDS(-1.05)S(1.05)DLS(-14.76)DGAVT(-66.34)LQEY(-101.29)LELK 0 1 1 0 Q9Y2X7 Q9Y2X7 Q9Y2X7 GIT1 ARF GTPase-activating protein GIT1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 953.129089355469 3 799.685349 2396.03422 31708.3841293859 1.1202 0.00089577 191040 152.77 191040 152.77 953.128157056707 101.15 0.25834 101.15 101.07 101.33 0 35 8 6 0.971945154727103 0.00529371645057709 0.117061267882451 3.1512E-05 1 23745 122.49 99.388 6 49559000 12544 8872.9 10583 7423.1 10917 8723.7 12205 12861 8285.6 112300 11863 8373.7 10776 7731.2 11074 8949.5 12254 16124 8341.6 106040 1 1 1 1 1 1 1 1 1 1 4579 2259 4026 4291 5087 5087 246 4187 SMEDPFFVVK 10 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)S(ph)M(ox)EDPFFVVK_ SM(1)EDPFFVVK S(1)MEDPFFVVK SM(40.04)EDPFFVVK S(40.04)MEDPFFVVK 1 1 1 0 O43752 O43752 O43752 STX6 Syntaxin-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.863586425781 2 668.78018 1335.54581 35530.3790847909 0.92198 0.0006166 171330 114.58 171330 114.58 783.361078305833 101.26 0.286 101.26 101.13 101.42 0 17 9 3 0.501833809999347 0.00148046240239217 0.0857521130326903 0.007698 1 23780 40.045 24.473 1 25661000 11515 10375 11217 12068 18463 12315 18899 17787 12895 54274 10895 9810.8 11402 12291 18309 12503 19052 19265 12978 51517 1 1 1 1 1 1 1 1 1 1 4580 126 4027 4292 5088 5088 13 219 SMEDPFFVVK 10 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)MEDPFFVVK_ S(1)MEDPFFVVK S(86.01)MEDPFFVVK 1 0 1 0 O43752 O43752 O43752 STX6 Syntaxin-6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.363952636719 2 660.782722 1319.55089 35034.1910930039 1.5364 0.0010152 173400 114.58 173400 114.58 775.363557860406 102.84 0.1694 102.84 102.75 102.92 0 16 5 4 0.848151731965468 0.00346690166767259 0.0676204736873502 2.0828E-06 1 24242 86.011 78.412 1 22668000 9738.6 8537.2 9677.2 7968.2 13080 11257 16379 12736 9104.4 42298 9215 8061.5 9795.8 8269.1 13112 11235 16314 13992 9291.8 40123 1 1 1 1 1 1 1 1 1 1 4581 126 4027 4293 5089 5089 219 SMGGAAIAPPTSLVEK 16 Oxidation (M),Phospho (STY) _S(ph)M(ox)GGAAIAPPTSLVEK_ SM(1)GGAAIAPPTSLVEK S(0.999)MGGAAIAPPTSLVEK SM(48.05)GGAAIAPPTSLVEK S(33.17)MGGAAIAPPT(-33.17)S(-37.18)LVEK 0 1 1 0 Q96I25 Q96I25 Q96I25 RBM17 Splicing factor 45 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.370056152344 3 542.259918 1623.75792 39166.0489685939 2.1049 0.0011414 281740 152.78 281740 152.78 695.370306890401 77.014 0.51727 77.014 76.737 77.254 0 36 17 3 0.559958906017252 0.00295919456705272 0.014704659369509 0.039977 1 18072 48.053 28.475 3 14507000 9878.1 10769 10375 11024 14246 10094 11882 11728 11322 7201.2 9349.1 10175 10462 11288 14194 10193 12193 11917 11196 7052.2 1 1 1 1 1 1 1 1 1 1 4582 1691 4028 4294 5090 5090 199 3108 SMGGAAIAPPTSLVEK 16 Phospho (STY) _S(ph)MGGAAIAPPTSLVEK_ S(1)MGGAAIAPPTSLVEK S(39.97)MGGAAIAPPT(-39.97)S(-45.6)LVEK 0 0 1 0 Q96I25 Q96I25 Q96I25 RBM17 Splicing factor 45 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.038696289063 3 536.92828 1607.76301 38028.8330314241 1.7479 0.0009385 284540 152.78 284540 152.78 689.703791288012 84.387 0.50444 84.387 84.13 84.634 0 54 17 4 0.822095550109057 0.00327591153646382 0.0247839605752342 0.012847 1 19705 66.335 46.239 3 19365000 7809.5 7715.2 8318.2 6519.8 14785 9108.8 16024 11000 6911.3 9232.4 7391.6 7281.4 8428.2 6808.8 14631 9055.7 16002 11238 7205.8 8948 1 1 1 1 1 1 1 1 1 1 4583 1691 4028 4295 5091 5091 3108 SMGSQEDDSGNKPSSYS 17 Phospho (STY) _SMGSQEDDSGNKPSSYS(ph)_ SMGSQEDDSGNKPSS(0.166)YS(0.834) S(-188.09)MGS(-181.7)QEDDS(-131)GNKPS(-37.23)S(-7.02)Y(-65.03)S(7.02) 0 0 1 1 Q9UNS2 Q9UNS2 Q9UNS2 COPS3 COP9 signalosome complex subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.003173828125 3 619.227782 1854.66152 35120.2238612831 2.0427 0.0012649 246720 152.77 246720 152.78 772.336457312236 41.167 0.51867 41.167 40.966 41.484 0 59 17 4 0.913135955854322 0.00391275495546614 0.14006692608662 5.5511E-11 1 9373 196.11 186.88 7 50510000 17566 27609 16916 28635 25707 19067 28307 24868 28228 11235 16619 26087 17184 29185 25606 19632 28687 25058 27856 11154 1 1 1 1 1 1 1 1 1 1 4584 2209 4029 4296 5092 5092 3997 SMGTGDTPGLEVPSSPLR 18 Phospho (STY) _SMGTGDTPGLEVPS(ph)SPLR_ SMGTGDTPGLEVPS(0.591)S(0.409)PLR S(-164.69)MGT(-127.34)GDT(-74.95)PGLEVPS(1.61)S(-1.61)PLR 0 0 1 0 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1056.01110839844 2 940.926623 1879.83869 30485.7847677345 1.8414 0.0017326 121780 114.58 121780 114.58 1056.0099785703 74.868 0.54933 74.868 74.57 75.119 0 55 18 4 0.977156136937127 0.0020129717057846 0.102243272786375 3.962E-16 1 17559 239.58 208.62 5 27771000 7203.5 9421.5 7386.8 10275 6901.4 8920.5 5898 8096.9 9365.8 16859 6817.1 8905 7419.7 10477 7021.3 9023.3 6146.8 8661.7 9094.1 16063 1 1 1 1 1 1 1 1 1 1 4585 1387 4030 4297 5093 5093 2520;2521 SMGTGDTPGLEVPSSPLRK 19 Oxidation (M),Phospho (STY) _SM(ox)GTGDTPGLEVPSS(ph)PLRK_ SM(1)GTGDTPGLEVPSSPLRK SMGTGDTPGLEVPS(0.08)S(0.92)PLRK SM(168.12)GTGDTPGLEVPSSPLRK S(-123.26)MGT(-118.46)GDT(-90.55)PGLEVPS(-10.59)S(10.59)PLRK 0 1 1 1 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.761291503906 3 675.650134 2023.92857 34202.4772614023 1.3005 0.00087867 226120 152.78 226120 152.78 828.760309919021 65.893 0.88806 65.893 65.544 66.432 0 135 29 7 0.985924304862557 0.0131131780650365 0.138621775916563 3.7517E-08 1 15441 168.12 143.53 5 185800000 19509 34129 25175 33016 21267 24346 18596 26177 37568 18610 18482 32234 24971 33829 21792 24848 19577 26748 36264 18129 1 1 1 1 1 1 1 1 1 1 4586 1387 4031 4298 5094 5094 172 2520;2521 SMGTGDTPGLEVPSSPLRK 19 Phospho (STY) _SMGTGDTPGLEVPSS(ph)PLRK_ SMGTGDTPGLEVPS(0.172)S(0.828)PLRK S(-197.73)MGT(-154.31)GDT(-102.58)PGLEVPS(-6.81)S(6.81)PLRK 0 0 1 1 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.430358886719 3 670.318495 2007.93366 34312.6382855531 2.5818 0.0017306 227910 152.77 227920 152.78 823.427920650345 71.909 1.2577 71.909 71.491 72.749 0 140 42 7 0.989736440045519 0.0150540227193445 0.1210218554328 8.2268E-17 1 16827 246.32 207.96 5 464640000 29594 41348 31823 43097 27755 33826 29244 38620 46721 13361 28012 39070 31869 43995 28444 34405 30175 38955 45358 13475 1 1 1 1 1 1 1 1 1 1 4587 1387 4031 4299 5095 5095 2520;2521 SMPDAMPLPGVGEELK 16 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)S(ph)M(ox)PDAMPLPGVGEELK_ SM(0.999)PDAM(0.001)PLPGVGEELK S(1)MPDAMPLPGVGEELK SM(30.32)PDAM(-30.32)PLPGVGEELK S(128.67)MPDAMPLPGVGEELK 1 1 1 0 O43865 O43865 O43865 AHCYL1 Putative adenosylhomocysteinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1019.47778320313 2 904.895946 1807.77734 30711.3282385874 1.5735 0.0014238 126620 114.58 126630 114.58 1019.47782873372 96.384 0.55109 96.384 96.087 96.638 0 47 18 4 0.844432659646605 0.00151879797239902 0.0300933673030582 3.4667E-07 1 22399 128.67 105.07 2 12767000 4169.7 3673.9 3390 3653.3 7476.7 3771.2 7915.3 6253.1 3856.1 51667 3942.7 3470.5 3509.2 3754.2 7348.5 3903.2 7924.9 7733 3977 48796 1 1 1 1 1 1 1 1 1 1 4588 133 4032 4300 5096 5096 14 230 SMPDAMPLPGVGEELK 16 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)MPDAMPLPGVGEELK_ S(1)MPDAMPLPGVGEELK S(138.94)MPDAMPLPGVGEELK 1 0 1 0 O43865 O43865 O43865 AHCYL1 Putative adenosylhomocysteinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1011.48028564453 2 896.898489 1791.78242 29699.5209029284 0.93946 0.0008426 127750 114.58 127750 114.58 1011.48027648994 101.09 0.14701 101.09 101.01 101.16 0 15 4 4 0.924523285868458 0.00574430906897202 0.231222759246899 2.7543E-07 1 23715 138.94 117.38 1 69803000 12152 8279.7 12740 11253 46325 10567 49144 26781 8521.4 55564 11501 7838.5 13211 11362 45030 10930 48776 27909 10131 52940 1 1 1 1 1 1 1 1 1 1 4589 133 4032 4301 5097 5097 230 SMPVLGSVSSVTK 13 Phospho (STY) _S(ph)MPVLGSVSSVTK_ S(1)MPVLGSVSSVTK S(54.98)MPVLGS(-54.98)VS(-94.27)S(-98.76)VT(-116.47)K 0 0 1 0 A0MZ66 A0MZ66 A0MZ66 KIAA1598 Shootin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.667724609375 3 457.891166 1370.65167 39128.1794902005 1.4181 0.00064932 333650 152.78 333650 152.78 610.667600625673 84.926 0.60827 84.926 84.634 85.243 1.4211E-14 38 20 2 0.820251981599214 0.00607315863292483 0.172961552583327 4.7249E-05 1 19850 128.45 97.223 5 16767000 8527.4 8540.1 10275 8734.9 2328.1 8942.8 1741.6 7161.3 9484.8 2727.6 8075.7 8068.7 10148 8960.2 2830.8 8937.4 2013 7334.6 9030.3 2734.1 1 1 1 1 1 1 1 1 1 1 4590 3 4033 4302 5098 5098 8 SMSAPVIFDR 10 Phospho (STY) _SMS(ph)APVIFDR_ S(0.01)MS(0.99)APVIFDR S(-19.81)MS(19.81)APVIFDR 0 0 1 0 O60749 O60749 O60749 SNX2 Sorting nexin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.350402832031 2 601.767406 1201.52026 37268.3097073871 1.6626 0.0010005 190410 114.58 190410 114.58 716.349216535301 80.222 0.79306 80.222 79.845 80.638 0 95 26 5 0.993959701738776 0.00254717467855015 0.0581832632969373 1.0639E-06 1 18735 166.16 124.76 2 96588000 19572 16951 18429 18166 9659.4 18716 9259.6 15924 18971 12745 18516 16020 18515 18587 10324 18724 9710.7 16465 18307 12370 1 1 1 1 1 1 1 1 1 1 4591 154 4034 4303 5099 5099 261 SMSHQAAIASQR 12 Phospho (STY) _S(ph)MSHQAAIASQR_ S(0.867)MS(0.133)HQAAIASQR S(8.16)MS(-8.16)HQAAIAS(-61.95)QR 0 0 1 0 Q4G0F5 Q4G0F5 Q4G0F5 VPS26B Vacuolar protein sorting-associated protein 26B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 532.589233398438 3 456.202626 1365.58605 43636.8985410554 0.93811 0.00042797 167440 76.387 167440 76.387 532.589365945713 33.45 0.75955 33.45 32.997 33.757 0 33 15 3 0.919271034441486 0.00228627573720621 0.00802803491112847 0.0023758 1 7499 94.569 77.358 3 20050000 9333.5 9828.3 9542 9550.4 9704 9159.7 10434 11345 8683.7 1922.4 8832.6 9282.8 9599.6 9816.7 9846.7 9229.7 10537 11353 8642.4 2072.7 1 1 1 1 1 1 1 1 1 1 4592 1137 4035 4304 5100 5100 1979 SMSPFRGPK 9 Phospho (STY) _SMS(ph)PFRGPK_ S(0.076)MS(0.924)PFRGPK S(-10.83)MS(10.83)PFRGPK 0 0 1 1 Q99640 Q99640 Q99640 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 515.606689453125 3 362.831582 1085.47292 43674.0806263949 1.204 0.00043685 421060 152.77 421060 152.78 515.606680324762 56.747 0.55968 56.747 56.454 57.014 0 59 18 4 0.989551198068647 0.0037907324954054 0.102395780148713 0.00011907 1 13239 128.08 101.48 2 48417000 11787 26356 13677 25503 12477 9321.8 12281 16664 26774 2540.5 11161 24893 13648 25978 12743 10163 12907 16507 25803 2777.8 1 1 1 1 1 1 1 1 1 1 4593 1780 4036 4305 5101 5101 3282 SMSPTSTPK 9 Phospho (STY) _SMS(ph)PTSTPK_ S(0.006)MS(0.99)PT(0.001)S(0.002)T(0.001)PK S(-22.21)MS(22.21)PT(-29)S(-27.33)T(-30.28)PK 0 0 1 0 O94913 O94913 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.376098632813 2 508.211933 1014.40931 36386.0983175215 1.9604 0.00099628 450920 229.16 450920 229.16 737.374327510411 43.415 0.3693 43.415 43.182 43.551 -7.1054E-15 31 12 3 0.716998879834935 0.00187643914814142 0.0400378218726968 5.3415E-06 1 9926 153.66 118.84 5 48816000 34151 42232 35422 41562 47209 38721 45977 39274 45448 7164 32320 39892 35737 42670 47194 38959 46845 39589 44866 7654.7 1 1 1 1 1 1 1 1 1 1 4594 227 4037 4306 5102 5102 392 SMVSPVPSPTGTISVPNSCPASPR 24 Phospho (STY) _SMVSPVPS(ph)PTGTISVPNSCPASPR_ SMVS(0.001)PVPS(0.823)PT(0.162)GT(0.013)ISVPNSCPASPR S(-33.78)MVS(-29.84)PVPS(7.05)PT(-7.05)GT(-17.86)IS(-44.11)VPNS(-64.88)CPAS(-64.2)PR 0 0 1 0 P85037 P85037 P85037 FOXK1 Forkhead box protein K1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.446044921875 3 835.721963 2504.14406 33337.0761669065 2.0118 0.0016813 91402 76.386 91404 76.388 912.443465417833 75.048 0.4249 75.048 74.889 75.314 0 45 14 5 0.846783088959396 0.00291499615790622 0.0372784338985489 0.0035825 1 17631 92.238 69.139 8 11387000 4553.8 6148.9 4771.5 5817.1 5315.7 3800.3 4728.4 5251.4 5463.6 17245 4309.9 5806.8 4797.7 5960.6 5354.6 3949.9 4861.4 5730.9 5359.7 16360 1 1 1 1 1 1 1 1 1 1 4595 816 4038 4307 5103 5103 1310;1311 SMVSPVPSPTGTISVPNSCPASPR 24 Phospho (STY) _SMVSPVPSPTGTISVPNSCPAS(ph)PR_ SMVSPVPSPTGTISVPNS(0.139)CPAS(0.861)PR S(-125.91)MVS(-114.92)PVPS(-103.29)PT(-90.31)GT(-71.94)IS(-42.47)VPNS(-7.92)CPAS(7.92)PR 0 0 1 0 P85037 P85037 P85037 FOXK1 Forkhead box protein K1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.446228027344 3 835.721963 2504.14406 32710.7635289696 1.8299 0.0015293 91402 76.386 91404 76.388 912.443630967724 77.082 0.4572 77.082 76.824 77.281 0 57 15 5 0.920951116556424 0.0032651304165316 0.0176906372746536 5.8124E-08 1 18066 156.11 114.2 8 17116000 5690.1 4711.9 5691.2 5515.6 7475.3 5496.7 6655.9 5756 5765.3 21649 5384.3 4455.7 5750.9 5613.9 7468.2 5554.5 6790.1 6415.9 5726.4 20518 1 1 1 1 1 1 1 1 1 1 4596 816 4038 4307 5104 5104 1310;1311 SMYEEEINETR 11 Unmodified _SMYEEEINETR_ 0 0 0 0 P20700 P20700 P20700 LMNB1 Lamin-B1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 815.38427734375 2 700.803556 1399.59256 NaN NaN NaN NaN NaN NaN NaN NaN 52.163 1 52.163 51.663 52.663 0 NaN NaN NaN 8.4993E-07 1 12137 155.53 128.31 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4597 448 4039 4308 5105 5105 SNEDVNSSELDEEYLIELEK 20 Unmodified _SNEDVNSSELDEEYLIELEK_ 0 0 0 0 Q99614 Q99614 Q99614 TTC1 Tetratricopeptide repeat protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.807861328125 3 785.69558 2354.06491 34676.8356713538 2.2119 0.0017379 194450 152.78 194450 152.78 938.804709196185 92.724 0.40337 92.724 92.483 92.886 0 37 13 4 0.982071995654193 0.00115328221726046 0.0169504258496028 2.5571E-05 1 21581 126.51 104.07 1 7227000 4612.2 6333 4999 5351.8 5772.4 5414.1 4655.3 4285.7 6497.9 23181 4365.8 5977 5018.9 5555.9 5798.2 5453.5 4842.8 5041.1 6333.4 21927 1 1 1 1 1 1 1 1 1 1 4598 1778 4040 4309 5106 5106 SNESVDIQDQEEK 13 Phospho (STY) _SNES(ph)VDIQDQEEK_ S(0.091)NES(0.909)VDIQDQEEK S(-9.99)NES(9.99)VDIQDQEEK 0 0 1 0 Q5UIP0 Q5UIP0 Q5UIP0 RIF1 Telomere-associated protein RIF1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.992492675781 3 534.217323 1599.63014 NaN NaN NaN NaN NaN NaN NaN NaN 47.564 1 47.564 47.064 48.064 0 NaN NaN NaN 1.9922E-05 1 11018 135.95 111.09 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4599 1197 4041 4310 5107 5107 2094 SNFSSGPGFPEYGYPADTVWPAMEQVSSRPTSPEK 35 Phospho (STY) _SNFSSGPGFPEYGYPADTVWPAMEQVSSRPT(ph)SPEK_ SNFSSGPGFPEYGYPADTVWPAMEQVS(0.042)S(0.028)RPT(0.556)S(0.373)PEK S(-184.54)NFS(-184.44)S(-180.97)GPGFPEY(-139.94)GY(-115.76)PADT(-64.76)VWPAMEQVS(-11.25)S(-12.93)RPT(1.73)S(-1.73)PEK 0 0 1 1 O15027 O15027 O15027 SEC16A Protein transport protein Sec16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1086.51403808594 4 971.430285 3881.69204 30054.2173671327 1.3563 0.0013175 117950 114.58 117950 114.58 1086.51004530226 99.368 0.31554 99.368 99.179 99.494 -1.4211E-14 25 10 4 0.946008833280348 0.00295817991290112 0.0982687928996769 1.0959E-12 2 23099 196.89 180.62 10 13557000 7410.4 11998 7943.5 11571 9001.7 9138.9 8943.2 13181 12345 92936 7014.1 11332 7980.9 11868 9074.8 9494.6 9199.4 15865 12036 87815 2 2 2 2 2 2 2 2 2 2 4600 75 4042 4311 5108;5109 5109 4321 SNISPNFNFMGQLLDFER 18 Phospho (STY) _SNIS(ph)PNFNFMGQLLDFER_ S(0.063)NIS(0.937)PNFNFMGQLLDFER S(-11.75)NIS(11.75)PNFNFMGQLLDFER 0 0 1 0 Q16828;Q99956;Q16829 Q16828 Q16828 DUSP6;DUSP9;DUSP7 Dual specificity protein phosphatase 6;Dual specificity protein phosphatase 9;Dual specificity protein phosphatase 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.053405761719 3 736.997645 2207.9711 34068.9262857892 1.477 0.0010886 103650 76.386 103650 76.387 813.718980801054 102.76 0.638 102.76 102.68 103.32 0 34 21 6 0.95364752372305 0.00876262113292148 0.0966969037775801 0.0029819 1 24222 93.404 67.909 2 57691000 2696.9 10152 2913.1 9755.7 3362.1 2804.3 2915 5242.3 10808 17408 2552.7 9587.8 2925.6 9929.3 3386.5 3184.5 3204.8 5688.5 10330 16513 1 1 1 1 1 1 1 1 1 1 4601 1115 4043 4312 5110 5110 1940 SNLDEEVNVIPPHTPVR 17 Phospho (STY) _SNLDEEVNVIPPHT(ph)PVR_ SNLDEEVNVIPPHT(1)PVR S(-87.85)NLDEEVNVIPPHT(87.85)PVR 0 0 1 0 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.712768554688 3 665.989367 1994.94627 35473.6840726878 1.6741 0.0011149 114700 76.387 114700 76.389 742.711167713063 64.861 1.9286 64.861 64.271 66.2 0 172 65 4 0.981251164222516 0.00475894574073448 0.113221462762963 0.00012987 2 15349 107.56 88.166 2 39769000 29783 24563 28089 26534 20121 29284 23488 27966 25378 19249 28176 23215 28290 27168 20939 29250 23799 28683 24961 18772 2 2 2 2 2 2 2 2 2 2 4602 310 4044 4313 5111;5112 5112 4370 SNLEGSLKDR 10 Phospho (STY) _SNLEGS(ph)LKDR_ SNLEGS(1)LKDR S(-52.56)NLEGS(52.56)LKDR 0 0 1 1 O14646 O14646 O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.962951660156 3 400.18697 1197.53908 42220.0781672713 1.6401 0.00065636 381760 152.78 381760 152.78 552.962255259161 45.143 0.49394 45.143 44.829 45.323 0 55 16 4 0.738248926769748 0.00330519115141959 0.0593289544196325 0.005899 1 10369 82.663 51.435 2 26400000 13926 13531 16482 15848 14168 13230 15649 14713 15238 1869.8 13187 12796 16424 16089 14535 13400 15847 14757 15053 2101.1 1 1 1 1 1 1 1 1 1 1 4603 60 4045 4314 5113 5113 99 SNPKSPQKPIVR 12 Phospho (STY) _SNPKS(ph)PQKPIVR_ S(0.035)NPKS(0.965)PQKPIVR S(-14.37)NPKS(14.37)PQKPIVR 0 0 1 2 P15056 P15056 P15056 BRAF Serine/threonine-protein kinase B-raf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.753845214844 3 477.588698 1429.74426 37684.6728958447 2.47 0.0011796 479830 229.16 479840 229.16 706.752765042647 41.991 0.39618 41.991 41.798 42.194 0 40 13 4 0.82715344430869 0.00165008081676932 0.0263059167977887 0.033184 1 9612 58.159 45.798 2 18932000 18161 21057 15998 22859 11617 17626 11535 17258 25747 6267.4 17177 19902 16180 23277 12060 17908 12135 17514 24802 6300.9 1 1 1 1 1 1 1 1 1 1 4604 394 4046 4315 5114 5114 626 SNPSIQATLNK 11 Phospho (STY) _S(ph)NPSIQATLNK_ S(0.898)NPS(0.102)IQATLNK S(9.47)NPS(-9.47)IQAT(-95.42)LNK 0 0 1 0 Q6UUV7 Q6UUV7 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.978759765625 3 418.20262 1251.58603 41415.6400752563 1.4313 0.00059859 365310 152.78 365320 152.78 570.977728861058 62.552 0.80864 62.552 62.152 62.961 0 86 27 4 0.763480588075065 0.00221621421863385 0.0826975342066352 1.2992E-05 1 14648 136.1 103.36 3 33317000 12212 10484 11483 12060 8259.1 12131 9666.3 9713.2 11086 3193.7 11553 9912.6 11568 12288 8592.9 12132 9810.8 9933 10879 3232 1 1 1 1 1 1 1 1 1 1 4605 1282 4047 4316 5115 5115 2284 SNQIPTEVR 9 Phospho (STY) _S(ph)NQIPTEVR_ S(1)NQIPTEVR S(55.97)NQIPT(-55.97)EVR 0 0 1 0 Q9BWH2 Q9BWH2 Q9BWH2 FUNDC2 FUN14 domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.8427734375 2 562.260803 1122.50705 36927.0475185651 1.7805 0.0010011 203790 114.58 203790 114.58 676.84236979781 46.298 0.52576 46.298 46.02 46.546 -7.1054E-15 57 17 5 0.998402318791826 0.00264931564477068 0.157165428508876 0.00032585 1 10651 121.21 62.775 2 106590000 42612 20065 41117 23368 15761 40740 17083 25180 21970 8477.9 40316 18973 41180 24071 17514 39882 17459 26116 21470 8565.7 1 1 1 1 1 1 1 1 1 1 4606 1853 4048 4317 5116 5116 3387 SNRNSIER 8 Phospho (STY) _SNRNS(ph)IER_ S(0.039)NRNS(0.961)IER S(-13.96)NRNS(13.96)IER 0 0 1 1 Q8TF01 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.818115234375 2 528.235119 1054.45569 39760.7995261663 2.2824 0.0012057 216920 114.58 216920 114.58 642.817059777333 21.956 0.22212 21.956 21.83 22.052 0 14 7 3 0.921622696979761 0.00470566544779728 0.132687717121843 0.034382 1 4950 56.359 29.244 2 3253900 1854.8 2329.2 1818.3 2101 1463.5 1198.6 1832.6 2370.7 2501 5454.7 1755 2199 1829.4 2156.7 1512 1266.6 1866 2496.9 2439.4 5191.1 1 1 1 1 1 1 1 1 1 1 4607 1556 4049 4318 5117 5117 2860 SNSAPLIHGLSDTSPVFQAEAPSAR 25 Phospho (STY) _SNS(ph)APLIHGLSDTSPVFQAEAPSAR_ S(0.393)NS(0.607)APLIHGLSDTSPVFQAEAPSAR S(-1.9)NS(1.9)APLIHGLS(-59.1)DT(-82.94)S(-102.13)PVFQAEAPS(-210.64)AR 0 0 1 0 Q96E09 Q96E09 Q96E09 FAM122A Protein FAM122A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.806823730469 3 878.084946 2631.23301 31649.7208397239 1.4226 0.0012491 86993 76.387 86994 76.388 954.806562308822 84.414 0.73599 84.414 83.985 84.721 0 93 25 5 0.977730805790686 0.00301169498376901 0.0244453928875528 1.8901E-24 1 19685 255.95 230.5 6 91396000 4457.2 5569.3 4306.7 6332.2 4056.7 5217.7 6360.3 6618.5 6625.6 20011 4217.1 5265.5 4346.5 6437.2 4164.3 5334.9 6370.9 7187.6 6526.2 18996 1 1 1 1 1 1 1 1 1 1 4608 1668 4051 4319 5118 5118 3072 SNSEDKLNSK 10 Phospho (STY) _SNS(ph)EDKLNSK_ S(0.03)NS(0.97)EDKLNSK S(-15.13)NS(15.13)EDKLNS(-45.65)K 0 0 1 1 Q9H2G2 Q9H2G2 Q9H2G2 SLK STE20-like serine/threonine-protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.672424316406 3 401.17473 1200.50236 38936.385407796 2.361 0.00094718 571230 229.16 571230 229.16 630.33738534928 41.755 0.59614 41.755 41.484 42.08 0 65 20 4 0.91848798482535 0.00582072528675292 0.0368979091968874 0.014863 1 9518 61.444 45.016 3 62555000 38707 30676 43142 26607 60433 42638 61608 46938 32278 10189 36643 28955 43400 27825 60296 42096 61852 47223 33093 10681 1 1 1 1 1 1 1 1 1 1 4609 1918 4052 4320 5119 5119 3482 SNSEVEDVGPTSHNR 15 Phospho (STY) _SNS(ph)EVEDVGPTSHNR_ S(0.253)NS(0.747)EVEDVGPTSHNR S(-4.7)NS(4.7)EVEDVGPT(-121.86)S(-129.85)HNR 0 0 1 0 Q13206 Q13206 Q13206 DDX10 Probable ATP-dependent RNA helicase DDX10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.292297363281 3 569.90385 1706.68972 38554.5769565865 0.98359 0.00056055 134030 76.387 134040 76.387 646.291498958149 34.823 0.48816 34.823 34.662 35.15 0 41 16 4 0.88235765303721 0.00315619889888097 0.0419073345538011 3.755E-08 1 7802 174.29 154.99 4 34461000 9870.3 11089 9273.6 11176 11001 8318.4 12317 9983.9 10128 3945 9337.6 10476 9395.9 11424 11079 8493.8 12415 10069 10086 3945.8 1 1 1 1 1 1 1 1 1 1 4610 936 4053 4321 5120 5120 1541 SNSFNNPLGNR 11 Phospho (STY) _SNS(ph)FNNPLGNR_ S(0.007)NS(0.993)FNNPLGNR S(-21.69)NS(21.69)FNNPLGNR 0 0 1 0 O95835 O95835 O95835 LATS1 Serine/threonine-protein kinase LATS1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.860473632813 2 650.277516 1298.54048 36047.962310497 1.8414 0.0011974 176200 114.58 176210 114.58 764.858730627968 56.822 0.61684 56.822 56.484 57.101 -7.1054E-15 56 20 4 0.930888167229785 0.00303548215135455 0.0890373825467192 2.1737E-10 1 13254 200.9 154.83 2 46892000 28071 37926 27950 45281 25758 26853 21637 30546 46552 11917 26562 35869 28116 45748 26234 27808 22905 30856 44876 11928 1 1 1 1 1 1 1 1 1 1 4611 268 4054 4322 5121 5121 449 SNSFSDER 8 Phospho (STY) _SNS(ph)FSDER_ S(0.005)NS(0.619)FS(0.376)DER S(-21.09)NS(2.16)FS(-2.16)DER 0 0 1 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.767517089844 2 511.184761 1020.35497 40478.8846211458 1.4933 0.00076337 224150 114.58 224150 114.58 625.766301202988 32.082 0.53478 32.082 31.821 32.356 0 46 17 4 0.99842444584088 0.00237227124551431 0.15892706201358 0.0008518 1 7148 118.9 75.839 3 30812000 17784 18791 18394 18591 6427.2 17815 7969.6 13699 20808 2400 16831 17750 18343 19088 7262.8 17844 8389.8 13973 19987 2576.9 1 1 1 1 1 1 1 1 1 1 4612 896 4055 4323 5122 5122 1466;1467 SNSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK 33 Phospho (STY) _SNS(ph)FSDEREFSGPSTPTGTLEFEGGEVSLEGGK_ S(0.088)NS(0.904)FS(0.008)DEREFSGPSTPTGTLEFEGGEVSLEGGK S(-10.11)NS(10.11)FS(-20.77)DEREFS(-42.27)GPS(-42.73)T(-41.48)PT(-57.19)GT(-63.69)LEFEGGEVS(-139.4)LEGGK 0 0 1 1 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1325.28100585938 3 1172.17718 3513.5097 26237.1615734196 1.7344 0.002033 130330 152.77 130330 152.78 1325.2843124255 87.429 0.20686 87.429 87.322 87.529 0 10 6 2 0.695440604856597 0.00113681653688435 0.0331325864598939 3.59E-12 1 20406 188.59 163.52 9 8620500 1725.8 2123.6 1976.4 1642.7 219.59 1450.3 527.24 2331.1 1990.7 33654 1634 2003.3 1954.8 1712.9 332.3 1536.7 561.99 3318.2 1902.1 31744 1 1 1 1 1 1 1 1 1 1 4613 896 4056 4324 5123 5123 1466;1467 SNSGLGGEVSGVMSKPNVDPQPWFQDGPK 29 Oxidation (M),Phospho (STY) _S(ph)NSGLGGEVSGVM(ox)SKPNVDPQPWFQDGPK_ SNSGLGGEVSGVM(1)SKPNVDPQPWFQDGPK S(0.55)NS(0.446)GLGGEVS(0.003)GVMS(0.001)KPNVDPQPWFQDGPK SNSGLGGEVSGVM(107.54)SKPNVDPQPWFQDGPK S(0.9)NS(-0.9)GLGGEVS(-22.72)GVMS(-27.3)KPNVDPQPWFQDGPK 0 1 1 1 Q9UGP4 Q9UGP4 Q9UGP4 LIMD1 LIM domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 950.473876953125 4 778.353584 3109.38523 33436.6007603034 1.5073 0.0011732 220810 171.87 220820 171.87 950.475960208952 84.921 0.49014 84.921 84.753 85.243 0 34 16 3 0.527396845444614 0.000503125805523222 0.0394221958735689 0.00011708 1 19835 107.54 88.921 4 7147700 3226.3 3579.5 2519.1 4510.9 3796.7 2945.8 2784.2 4190.5 3771.9 18566 3050.2 3386.8 2591 4549.7 3764.1 3073.1 2909.7 4714.6 3679.9 17579 1 1 1 1 1 1 1 1 1 1 4614 2139 4057 4325 5124 5124 225 3849 SNSGLGGEVSGVMSKPNVDPQPWFQDGPK 29 Phospho (STY) _S(ph)NSGLGGEVSGVMSKPNVDPQPWFQDGPK_ S(0.558)NS(0.425)GLGGEVS(0.005)GVMS(0.012)KPNVDPQPWFQDGPK S(1.19)NS(-1.19)GLGGEVS(-20.83)GVMS(-16.68)KPNVDPQPWFQDGPK 0 0 1 1 Q9UGP4 Q9UGP4 Q9UGP4 LIMD1 LIM domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 946.228210449219 4 774.354855 3093.39032 32843.9936594318 1.9804 0.0015336 221960 171.87 221960 171.87 946.4782337879 93.908 0.57966 93.908 93.673 94.253 0 73 19 6 0.460431947711123 0.00084932196764386 0.0307136343945582 0.0034849 1 21904 93.969 81.01 4 9837100 3926.7 5750.9 3777.3 5166.3 4795.7 3837.1 4155.1 5673.7 4772.3 19683 3715.1 5429.4 3823.3 5318.9 4798.1 3965.6 4277.2 6213.1 4682.7 18665 1 1 1 1 1 1 1 1 1 1 4615 2139 4057 4326 5125 5125 3849 SNSGRELTDEEILASVMIK 19 Oxidation (M),Phospho (STY) _S(ph)NSGRELTDEEILASVM(ox)IK_ SNSGRELTDEEILASVM(1)IK S(0.441)NS(0.441)GRELT(0.118)DEEILASVMIK SNSGRELTDEEILASVM(99.14)IK S(0)NS(0)GRELT(-5.74)DEEILAS(-59.9)VMIK 0 1 1 1 Q5JSH3 Q5JSH3 Q5JSH3 WDR44 WD repeat-containing protein 44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.344299316406 4 547.760534 2187.01303 40029.6130404435 1.6604 0.00090949 209180 114.58 209180 114.58 662.592057236406 91.745 0.77432 91.745 91.452 92.226 0 68 26 4 0.75402860145038 0.000874868167016136 0.0197154995796006 0.0011285 1 21361 99.135 78.767 4 10108000 2614.2 4300.3 2466.8 3600.8 3410.5 2449.2 3147.1 3364.2 4116.9 7671.3 2473.1 4058.4 2503.5 3721.4 3402.5 2532.3 3242.7 3570.2 4021 7301.4 1 1 1 1 1 1 1 1 1 1 4616 1167 4058 4327 5126 5126 154 2019;2020 SNSGRELTDEEILASVMIK 19 Phospho (STY) _S(ph)NSGRELTDEEILASVMIK_ S(0.651)NS(0.348)GRELT(0.001)DEEILASVMIK S(2.71)NS(-2.71)GRELT(-29.52)DEEILAS(-150.42)VMIK 0 0 1 1 Q5JSH3 Q5JSH3 Q5JSH3 WDR44 WD repeat-containing protein 44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.595275878906 4 543.761805 2171.01811 38303.7666396825 2.2507 0.0012239 210720 114.58 210720 114.58 658.5940741358 100.16 0.17146 100.16 100.06 100.23 0 18 5 5 0.98102872734322 0.0141164795609339 0.260123002669504 1.3495E-16 1 23371 244.01 211.08 4 101530000 14609 27901 15733 26935 23618 15091 22094 25185 29311 16359 13828 26351 15872 27525 23487 15812 22760 25364 28615 15987 1 1 1 1 1 1 1 1 1 1 4617 1167 4058 4328 5127 5127 2019;2020 SNSISQIPSLEEMQQLR 17 Phospho (STY) _S(ph)NSISQIPSLEEMQQLR_ S(0.512)NS(0.32)IS(0.168)QIPSLEEMQQLR S(2.04)NS(-2.04)IS(-4.82)QIPS(-89.43)LEEMQQLR 0 0 1 0 Q9NYJ8 Q9NYJ8 Q9NYJ8 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.376281738281 3 680.653767 2038.93947 36485.9425622147 1.0957 0.00074578 112230 76.386 112230 76.387 757.375916777296 91.402 0.51554 91.402 91.168 91.683 0 61 17 5 0.996658752636191 0.00118554631976965 0.00842574430162222 2.3197E-05 1 21283 130.05 91.75 4 18053000 4164.1 4295.5 3580.1 3242.4 3730.4 3717.6 5141.5 3795.7 4341.3 19718 3938.1 4051.8 3643 3401.1 3795.9 3743.3 5144 4398.5 4317.5 18655 1 1 1 1 1 1 1 1 1 1 4618 2074 4059 4329 5128 5128 3758 SNSLSEQLAINTSPDAVK 18 Phospho (STY) _SNS(ph)LSEQLAINTSPDAVK_ S(0.239)NS(0.753)LS(0.008)EQLAINTSPDAVK S(-4.99)NS(4.99)LS(-19.88)EQLAINT(-138.21)S(-156.01)PDAVK 0 0 1 0 Q5T1M5 Q5T1M5 Q5T1M5 FKBP15 FK506-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.088562011719 3 651.977015 1952.90922 35421.0749512852 2.0861 0.0013601 234330 152.78 234330 152.78 805.087560689959 76.932 0.43275 76.932 76.707 77.14 0 45 14 5 0.909687894865789 0.00514729736941171 0.0283860607431239 5.8589E-11 1 18043 188.73 162.61 5 21013000 7887.9 6606.5 10105 6210.2 23159 9204.5 24477 13203 7414.2 12090 7472.3 6238.6 10210 6448.8 22733 9165.4 24385 13453 8039.2 11690 1 1 1 1 1 1 1 1 1 1 4619 1182 4060 4330 5129 5129 2057 SNSPDKFK 8 Phospho (STY) _SNS(ph)PDKFK_ S(0.026)NS(0.974)PDKFK S(-15.8)NS(15.8)PDKFK 0 0 1 1 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.978515625 3 334.814585 1001.42193 41607.3763079487 1.6723 0.00055991 684450 229.16 684450 229.16 563.977835438234 47.789 0.73458 47.789 47.571 48.305 0 51 24 3 0.961165754951339 0.00774783185803139 0.170063140342283 0.00086277 1 11081 104.24 76.502 2 62984000 48649 41965 49939 41298 39826 48096 43475 44301 45376 5104.8 46039 39639 50094 42554 41066 47867 44131 44738 44692 5832.1 1 1 1 1 1 1 1 1 1 1 4620 1101 4061 4331 5130 5130 1915 SNSPLPVPPSK 11 Phospho (STY) _SNS(ph)PLPVPPSK_ S(0.13)NS(0.87)PLPVPPSK S(-8.24)NS(8.24)PLPVPPS(-82.54)K 0 0 1 0 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 554.3076171875 3 401.532078 1201.5744 41868.9923872893 1.4878 0.00059738 380480 152.78 380480 152.78 554.30740703992 59.735 4.4433 59.735 58.667 63.11 0 555 152 5 0.996057851450424 0.0199385933124912 0.114585213031349 0.0001194 4 14003 113.43 96.801 3 204710000 132210 83466 144280 75021 59143 129830 66133 99948 82395 7817.8 125150 78800 143560 78425 65160 127330 67428 101650 80609 9674.6 4 4 4 4 4 4 4 4 4 4 4621 940 4062 4332 5131;5132;5133;5134 5132 1555 SNSPLPVPPSK 11 Phospho (STY) _SNS(ph)PLPVPPSK_ SNS(1)PLPVPPSK S(-39.91)NS(39.91)PLPVPPS(-93.91)K 0 0 1 0 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.959716796875 2 601.794479 1201.5744 34729.8802486889 2.0949 0.0012607 380800 229.16 380800 229.16 830.957485396371 59.753 4.0308 59.753 58.786 62.817 0 434 138 4 0.52162701327273 0.00240613576594187 0.124548426849694 6.93E-07 1 14394 157.67 139.36 3 133380000 43073 32393 47460 31812 23029 48335 25673 36840 33873 54016 40774 30597 47243 32965 24858 47669 26231 39026 33074 51715 1 1 1 1 1 1 1 1 1 1 4622 940 4062 4332 5135 5135 1555 SNSPRGEAQK 10 Phospho (STY) _S(ph)NSPRGEAQK_ S(0.5)NS(0.5)PRGEAQK S(0)NS(0)PRGEAQK 0 0 1 1 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.947082519531 3 385.171432 1152.49247 42841.5270836732 1.0777 0.00041508 396640 152.77 396640 152.77 537.943916571547 25.735 0.57237 25.735 25.53 26.102 0 44 19 4 0.975747999592365 0.00431836863495633 0.0288506376854502 0.009616 1 5729 70.332 42.163 2 16701000 9443.4 5399.4 9831.6 6324.3 10909 10353 10275 9011.8 5819 2578.3 8937.3 5105.9 9889.5 6501.9 10994 10185 10367 9169.1 5930.6 2636.4 1 1 1 1 1 1 1 1 1 1 4623 1756 4063 4333 5136 5136 3238;3239 SNSRLEDQVIGVALQASK 18 Phospho (STY) _S(ph)NSRLEDQVIGVALQASK_ S(0.622)NS(0.378)RLEDQVIGVALQASK S(2.16)NS(-2.16)RLEDQVIGVALQAS(-150.82)K 0 0 1 1 Q2KHR3 Q2KHR3 Q2KHR3 QSER1 Glutamine and serine-rich protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.778991699219 3 665.668404 1993.98338 35504.4058719148 2.1114 0.0014055 229510 152.78 229510 152.78 818.778157306967 94.582 0.69078 94.582 94.224 94.914 -1.4211E-14 66 23 3 0.891592263548105 0.00366935091399056 0.100757072663256 5.8973E-11 1 21980 188.29 164.49 3 17169000 3684.3 7523.9 3615.8 6922.2 5537.9 3886.3 5176.5 6078 8009.5 30675 3486 7104.2 3667.7 7095.4 5504 4116.1 5364.1 6936.1 7782.9 29025 1 1 1 1 1 1 1 1 1 1 4624 1121 4064 4334 5137 5137 1951 SNSSLFK 7 Phospho (STY) _S(ph)NSSLFK_ S(0.576)NS(0.337)S(0.086)LFK S(2.32)NS(-2.32)S(-8.24)LFK 0 0 1 0 O94759 O94759 O94759 TRPM2 Transient receptor potential cation channel subfamily M member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.852844238281 2 431.688951 861.363349 38621.8200409097 2.6458 0.0011422 530850 229.16 530850 229.16 660.852040097812 64.956 0.48877 64.956 64.738 65.226 0 40 16 3 0.693438004043815 0.00122505833945629 0.0236557674551884 0.015603 1 15253 78.655 41.147 3 17773000 46351 7770.5 47503 8456.7 8845.3 44274 8127.6 20465 8278.7 4392.7 43864 7344.5 47292 9216.7 11249 42489 8311.8 21583 8162.1 4609.9 1 1 1 1 1 1 1 1 1 1 4625 212 4065 4335 5138 5138 371 SNSVEKPVSSILSR 14 Phospho (STY) _SNS(ph)VEKPVSSILSR_ S(0.03)NS(0.97)VEKPVSSILSR S(-15.14)NS(15.14)VEKPVS(-55.32)S(-58.14)ILS(-85.81)R 0 0 1 1 Q9UI08 Q9UI08 Q9UI08 EVL Ena/VASP-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.375732421875 3 528.26606 1581.77635 37606.3852117232 1.4108 0.00074529 289200 152.78 289200 152.78 681.041852357143 68.736 2.0891 68.736 68.3 70.389 0 208 71 6 0.941649292243505 0.00712012722813997 0.098379254522739 0.00012638 1 16086 113.33 97.787 5 655690000 18227 6353.1 22597 6218 17712 21504 19104 16641 5473.1 6806 17263 6000.8 22445 6638.3 18270 20825 19006 17086 5978.4 6793.8 1 1 1 1 1 1 1 1 1 1 4626 2152 4066 4336 5139 5139 3875 SNSVGIQDAFNDGSDSTFQK 20 Phospho (STY) _SNS(ph)VGIQDAFNDGSDSTFQK_ S(0.189)NS(0.811)VGIQDAFNDGSDSTFQK S(-6.32)NS(6.32)VGIQDAFNDGS(-152.23)DS(-156.62)T(-164.76)FQK 0 0 1 0 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 886.086730957031 3 732.974222 2195.90084 33292.0203593791 1.6125 0.001182 208430 152.78 208430 152.78 886.084011140691 79.791 0.62908 79.791 79.474 80.104 0 75 21 5 0.976027123741653 0.00464501265961643 0.0357519084769072 2.361E-11 1 18657 195.01 175.17 5 44523000 8655.6 8287.1 8654.8 10304 10269 8742.6 9990.8 9470.9 10088 13056 8190.5 7840 8734.1 10431 10322 8866.6 10186 9865.2 9949.9 12513 1 1 1 1 1 1 1 1 1 1 4627 57 4067 4337 5140 5140 87 SNSVGIQDAFNDGSDSTFQKR 21 Phospho (STY) _SNS(ph)VGIQDAFNDGSDSTFQKR_ SNS(1)VGIQDAFNDGSDSTFQKR S(-47.7)NS(47.7)VGIQDAFNDGS(-92.06)DS(-121.58)T(-121.58)FQKR 0 0 1 1 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.119018554688 3 785.007926 2352.00195 32208.0276185361 1.8864 0.0014809 194620 152.78 194620 152.78 938.117934793162 71.279 0.51655 71.279 71.06 71.576 0 48 17 4 0.982545405652519 0.00370626449742368 0.127748931626384 1.3742E-16 1 16740 233.42 195.18 5 20824000 8920.4 8123.9 8301.5 7406.5 11069 7074.9 10902 11042 9070.3 54821 8438.7 7670.3 8428.3 7643.3 11066 7259.3 11055 12574 9027.3 51876 1 1 1 1 1 1 1 1 1 1 4628 57 4068 4338 5141 5141 87 SNSWQGNLGGNK 12 Phospho (STY) _SNS(ph)WQGNLGGNK_ S(0.007)NS(0.993)WQGNLGGNK S(-21.31)NS(21.31)WQGNLGGNK 0 0 1 0 Q9P0K1 Q9P0K1 Q9P0K1 ADAM22 Disintegrin and metalloproteinase domain-containing protein 22 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 900.449768066406 2 671.282798 1340.55104 33460.1920993973 2.1579 0.0014486 341380 229.17 341390 229.17 900.448250111162 57.422 0.42764 57.422 57.19 57.617 0 32 14 3 0.48218238654841 0.000849061852834197 0.0558877746762057 0.00022838 1 13438 105.17 12.305 2 10337000 18509 10489 15930 10900 23611 19165 21951 19244 12036 134920 17504 9910.9 16279 11300 23474 19096 22153 23365 12296 127490 1 1 1 1 1 1 1 1 1 1 4629 2091 4069 4339 5142 5142 3781 SNTAGSQSQVETEA 14 Phospho (STY) _SNTAGSQS(ph)QVETEA_ SNTAGS(0.24)QS(0.76)QVETEA S(-37.83)NT(-31.98)AGS(-5.01)QS(5.01)QVET(-109.2)EA 0 0 1 0 Q02790 Q02790 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 859.378173828125 2 744.796132 1487.57771 33461.740334004 0.94534 0.00070408 153840 114.58 153840 114.58 859.377439177524 34.329 1.0755 34.329 33.757 34.832 0 98 36 5 0.980426643376455 0.0023358909770121 0.0209247041946222 3.8182E-11 1 7669 209.19 184.72 5 206030000 6825 5968.1 7016.5 6524.7 14349 7277.9 17136 11636 7024.8 3461.8 6459 5641.1 7149.3 6677.5 14159 7322.5 17032 11607 7360.2 3529 1 1 1 1 1 1 1 1 1 1 4630 854 4070 4340 5143 5143 1376 SNVGGLLSPQRK 12 Phospho (STY) _SNVGGLLS(ph)PQRK_ S(0.001)NVGGLLS(0.999)PQRK S(-31.2)NVGGLLS(31.2)PQRK 0 0 1 1 Q99504 Q99504 Q99504 EYA3 Eyes absent homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.674621582031 3 445.897531 1334.67076 41318.5265408118 1.1616 0.00051797 342630 152.78 342630 152.78 598.673143128461 58.89 0.5528 58.89 58.581 59.133 0 48 18 3 0.984675631531449 0.00169819641625313 0.0324648124013805 0.038291 1 13798 49.343 32.672 2 11720000 7467.3 12416 7185 11341 7868.6 7904.9 8358.9 9782.2 12431 2058.5 7064.9 11723 7260.4 11655 7955.5 8104.2 8596.6 9801.5 12093 2164.8 1 1 1 1 1 1 1 1 1 1 4631 1768 4071 4341 5144 5144 3253 SPAAAAAGAGER 12 Phospho (STY) _S(ph)PAAAAAGAGER_ S(1)PAAAAAGAGER S(82.49)PAAAAAGAGER 0 0 1 0 A8CG34;Q96HA1 A8CG34;Q96HA1 Q96HA1 POM121C;POM121 Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.323120117188 2 554.742777 1107.471 39331.8531953257 1.891 0.001049 206550 114.58 206550 114.58 669.322755107163 31.758 0.43744 31.758 31.502 31.94 -3.5527E-15 20 14 2 0.960834731822434 0.000540556114058922 0.0222046745755766 0.010588 1 7123 82.494 59.714 1 6918800 14990 10399 13037 10510 10505 12704 7691.3 11793 10652 5041.3 14177 9824.3 13203 10820 10773 12634 8045.3 12016 10385 5020 1 1 1 1 1 1 1 1 1 1 4632 1688;15 4072 4342 5145 5145 28 SPAAPYFLGSSFSPVR 16 Phospho (STY) _SPAAPYFLGSSFS(ph)PVR_ SPAAPYFLGS(0.052)S(0.033)FS(0.915)PVR S(-115.12)PAAPY(-88.11)FLGS(-12.49)S(-14.41)FS(12.49)PVR 0 0 1 0 P30291 P30291 P30291 WEE1 Wee1-like protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.000305175781 3 588.278189 1761.81274 38444.0026336434 1.4036 0.0008257 129850 76.387 129850 76.388 664.999982271062 94.937 0.68425 94.937 94.543 95.227 0 85 23 5 0.98845305385319 0.00307032232275473 0.0302774164493775 5.7696E-07 1 22054 140.63 108.1 5 41889000 1982.4 3231.2 2610.1 2798 2526.8 2453.6 2474.9 2489.5 2863.9 8831.2 1878.3 3049.9 2591.1 2893.8 2568.8 2491.8 2532.4 2761.9 2809.3 8373.3 1 1 1 1 1 1 1 1 1 1 4633 514 4073 4343 5146 5146 838 SPAGPAATPAQAQAASTPR 19 Phospho (STY) _SPAGPAATPAQAQAAST(ph)PR_ SPAGPAATPAQAQAAS(0.093)T(0.907)PR S(-144.79)PAGPAAT(-116.78)PAQAQAAS(-9.88)T(9.88)PR 0 0 1 0 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.010986328125 3 610.622907 1828.84689 40151.4947705235 0.97972 0.00059824 125100 76.387 125100 76.388 687.343873411457 37.363 0.355 37.363 37.183 37.538 -7.1054E-15 23 15 2 0.445790736878104 0.000604114153280583 0.00202743300754753 1.0337E-10 1 8444 177.24 154.77 4 45475000 21839 20013 20218 20816 36208 21579 37650 28252 22290 6126.5 20659 18910 20650 21336 35806 21691 37834 28265 22645 6422.7 1 1 1 1 1 1 1 1 1 1 4634 953 4074 4344 5147 5147 4535 SPALKSPLQSVVVR 14 Phospho (STY) _SPALKS(ph)PLQSVVVR_ S(0.012)PALKS(0.984)PLQS(0.005)VVVR S(-19.23)PALKS(19.23)PLQS(-23.17)VVVR 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.732116699219 3 520.955157 1559.84364 38262.9831041308 2.1439 0.0011169 293260 152.78 293260 152.78 674.065714542268 72.737 0.52839 72.737 72.485 73.013 0 70 17 5 0.979063489459192 0.003429268925164 0.0606367479762555 3.6827E-07 1 17039 160.3 138.74 3 119280000 11618 16779 14416 17627 14788 10764 17237 14793 17007 7706.6 11004 15856 14364 17937 15019 11161 17422 14914 16790 7599.1 1 1 1 1 1 1 1 1 1 1 4635 2257 4075 4345 5148 5148 4171;4172 SPARTPPSEEDSAEAER 17 Phospho (STY) _SPART(ph)PPSEEDSAEAER_ S(0.005)PART(0.992)PPS(0.003)EEDSAEAER S(-22.85)PART(22.85)PPS(-25.36)EEDS(-55.45)AEAER 0 0 1 1 O43765 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.661499023438 3 636.93722 1907.78983 36852.0669350674 1.7069 0.0010872 119930 76.386 119930 76.387 713.323187678545 29.403 0.53263 29.403 29.046 29.578 0 47 17 4 0.97703711200988 0.00267952625816123 0.0506361379216069 3.8897E-05 1 6536 133.1 111.75 4 17396000 7568.5 6425.2 8076.1 6752.7 7371.3 8363 6530.5 8363.7 6761.8 3175.9 7163.6 6071.5 8092.8 6939.4 7510.4 8316.8 6694.2 8485 6662.1 3184 1 1 1 1 1 1 1 1 1 1 4636 127 4076 4346 5149 5149 220;4330 SPAVATSTAAPPPPSSPLPSK 21 Phospho (STY) _SPAVATSTAAPPPPS(ph)SPLPSK_ SPAVATSTAAPPPPS(0.578)S(0.402)PLPS(0.02)K S(-85.02)PAVAT(-69.24)S(-62.98)T(-62.98)AAPPPPS(1.58)S(-1.58)PLPS(-14.57)K 0 0 1 0 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.784057617188 3 680.673156 2038.99764 34538.6374665561 1.6982 0.0011559 224450 152.78 224450 152.78 833.783003375215 60.424 0.90051 60.424 60.05 60.951 7.1054E-15 145 30 6 0.91050629036137 0.00410152326093245 0.0201383044724042 1.9623E-05 1 14119 128.17 98.487 7 153630000 13328 15483 14278 16176 12856 13655 15139 15591 18267 20879 12615 14630 14310 16527 13165 13863 15386 16193 17891 20021 1 1 1 1 1 1 1 1 1 1 4637 993 4077 4347 5150 5150 1682 SPAVKPAAAPK 11 Phospho (STY) _S(ph)PAVKPAAAPK_ S(1)PAVKPAAAPK S(86.5)PAVKPAAAPK 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 602.028137207031 3 372.86528 1115.57401 40967.0120740117 1.7882 0.00066674 614600 229.16 614600 229.16 602.028387676346 44.537 0.5119 44.537 44.286 44.798 0 53 17 4 0.991097439217946 0.00288586184672959 0.0464716771111665 0.0047987 1 10226 86.497 65.656 1 31272000 21334 29837 26671 30630 20914 22443 22044 27292 34229 3283.5 20207 28190 26481 31270 21591 22928 22719 27287 33257 3723.4 1 1 1 1 1 1 1 1 1 1 4638 1035 4078 4348 5151 5151 1782 SPCGLTEQYLHK 12 Phospho (STY) _S(ph)PCGLTEQYLHK_ S(0.982)PCGLT(0.018)EQYLHK S(17.43)PCGLT(-17.43)EQY(-83.47)LHK 0 0 1 0 P78559 P78559 P78559 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.00048828125 3 504.889936 1511.64798 38792.0624581323 2.3323 0.0011775 302590 152.77 302590 152.78 657.66387432492 71.905 0.79325 71.905 71.372 72.165 0 89 26 5 0.909911485768074 0.00443340906402085 0.0312528702024445 3.824E-05 1 16822 129.38 108.43 3 33156000 5458.9 18499 6734.8 15937 5466.3 6984.5 5328.7 9523.5 18456 6128.1 5170.3 17461 6692.5 16376 5632.5 7443.9 5790.3 9639 17654 5990.7 1 1 1 1 1 1 1 1 1 1 4639 806 4079 4349 5152 5152 1289 SPDKPGGSPSASR 13 Phospho (STY) _S(ph)PDKPGGSPSASR_ S(0.971)PDKPGGS(0.027)PS(0.001)ASR S(15.51)PDKPGGS(-15.51)PS(-30.02)AS(-35.51)R 0 0 1 1 Q9Y3T9 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.304870605469 3 441.529396 1321.56636 40914.4852428768 1.652 0.00072939 346010 152.77 346010 152.78 594.304374813416 29.558 0.29519 29.558 29.37 29.665 3.5527E-15 21 9 3 0.541448928733065 0.00130241756623421 0.0174372124884676 0.03718 1 6584 47.222 30.556 4 11279000 20281 13482 18560 14736 17829 19950 16484 16710 14743 2748.3 19185 12743 18777 15137 18115 19729 16796 16970 14621 2974.6 1 1 1 1 1 1 1 1 1 1 4640 2270 4080 4350 5153 5153 4201;4202;4203 SPDKPGGSPSASRR 14 Phospho (STY) _SPDKPGGS(ph)PSASRR_ SPDKPGGS(0.763)PS(0.096)AS(0.141)RR S(-48.72)PDKPGGS(7.33)PS(-8.99)AS(-7.33)RR 0 0 1 2 Q9Y3T9 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.337707519531 3 493.5631 1477.66747 40245.6165174108 1.3509 0.00066674 309530 152.77 309530 152.77 646.671224438252 26.742 0.20506 26.742 26.65 26.856 0 15 6 3 0.965477705574442 0.00082349713873266 0.00853460221693015 0.024729 1 5972 62.765 47.611 4 11020000 5580.4 5271.3 5846 6800.2 5068.8 5924.3 5955.4 5387.6 5775.1 2695.9 5281.5 4988.3 5863.4 6874.8 5202.1 5975.6 6014.5 5506.2 5706 2663.2 1 1 1 1 1 1 1 1 1 1 4641 2270 4081 4351 5154 5154 4201;4202;4203 SPDNSIK 7 Phospho (STY) _S(ph)PDNSIK_ S(1)PDNSIK S(55.83)PDNS(-55.83)IK 0 0 1 0 Q9UKL0 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.842956542969 2 420.678583 839.342613 38758.4212016633 2.2955 0.00096565 544750 229.16 544750 229.16 649.841953390394 41.234 0.71658 41.234 40.938 41.655 0 50 24 3 0.925385483806724 0.00177456885698749 0.0950097557647448 0.0016486 1 9382 113.1 60.229 2 24681000 28423 32649 32761 32132 26023 29781 27326 28259 33777 6610.2 26912 30839 32659 32986 26831 29949 27930 28604 33054 6878.3 1 1 1 1 1 1 1 1 1 1 4642 2175 4082 4352 5155 5155 3922 SPDPFGAVAAQK 12 Phospho (STY) _S(ph)PDPFGAVAAQK_ S(1)PDPFGAVAAQK S(107.6)PDPFGAVAAQK 0 0 1 0 Q9Y3Q8 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 575.972045898438 3 423.195466 1266.56457 42714.182275578 1.9855 0.00084025 361010 152.78 361010 152.78 575.971288364794 74.913 0.69922 74.913 74.449 75.149 0 51 23 3 0.974020388173695 0.00187078555791808 0.0223406702563335 0.00012676 1 17570 107.6 61.629 1 7067600 5129.2 9814.4 6074.6 10227 4993.9 6393.3 3884.1 7156.1 10086 3303 4857 9273.7 6047.1 10414 5121.8 6595.2 4176.8 7248 9689 3275.8 1 1 1 1 1 1 1 1 1 1 4643 2269 4083 4353 5156 5156 4200 SPDVISSASTALSQDIPEIASEALSR 26 Phospho (STY) _S(ph)PDVISSASTALSQDIPEIASEALSR_ S(0.869)PDVIS(0.129)S(0.002)ASTALSQDIPEIASEALSR S(8.29)PDVIS(-8.29)S(-25.67)AS(-50.26)T(-57.9)ALS(-100.43)QDIPEIAS(-180.09)EALS(-189.51)R 0 0 1 0 Q6P2E9 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 985.826965332031 3 908.770693 2723.29025 31564.6873393107 1.1992 0.0010898 84056 76.388 84057 76.389 985.492432531307 102.18 0.20643 102.18 102.07 102.28 1.4211E-14 21 6 4 0.960289052934984 0.00939929100248203 0.113491373867291 5.0861E-12 1 24069 192.58 171.27 8 59454000 3441.2 4910.5 4013.6 4955.4 4687.9 4805.3 4625.6 6157.2 5767.1 40905 3258.4 4639 4016.7 5082.9 4717.7 4917.3 4742.7 7356.3 5642 38660 1 1 1 1 1 1 1 1 1 1 4644 1258 4084 4354 5157 5157 2234 SPEAPQPVIAMEEPAVPAPLPK 22 Oxidation (M),Phospho (STY) _S(ph)PEAPQPVIAM(ox)EEPAVPAPLPK_ SPEAPQPVIAM(1)EEPAVPAPLPK S(1)PEAPQPVIAMEEPAVPAPLPK SPEAPQPVIAM(94.61)EEPAVPAPLPK S(94.61)PEAPQPVIAMEEPAVPAPLPK 0 1 1 0 P14317 P14317 P14317 HCLS1 Hematopoietic lineage cell-specific protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.835388183594 3 788.72341 2363.1484 33544.7331191289 1.8621 0.0014687 193700 152.78 193700 152.78 941.832622226913 83.826 0.42924 83.826 83.615 84.044 0 43 14 4 0.968935854605153 0.00331103679403018 0.0361892761723299 0.0027551 1 19599 94.606 85.076 1 10078000 5965.7 3163.1 5240.1 3736.5 5880 5392.7 5127.1 4797.9 3470.5 29054 5642.4 2991.3 5324.6 3828.1 5917 5378.7 5209.8 5711.2 3494.6 27469 1 1 1 1 1 1 1 1 1 1 4645 387 4085 4355 5158 5158 50 621 SPEAPQPVIAMEEPAVPAPLPK 22 Phospho (STY) _S(ph)PEAPQPVIAMEEPAVPAPLPK_ S(1)PEAPQPVIAMEEPAVPAPLPK S(123.28)PEAPQPVIAMEEPAVPAPLPK 0 0 1 0 P14317 P14317 P14317 HCLS1 Hematopoietic lineage cell-specific protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 936.500244140625 3 783.391772 2347.15349 32629.7452269456 1.4992 0.0011745 195020 152.78 195020 152.78 936.501354237244 95.048 0.56678 95.048 94.738 95.305 0 82 19 6 0.860743273800706 0.00307628724129201 0.017340613241721 2.864E-05 1 22085 123.28 111.86 1 49487000 7261.2 3155.9 7517.8 4391.8 7481.1 6589.1 7904.4 6875.8 3780.3 33594 6871.9 2988.3 7555.6 4469.2 7596.1 6573.4 7912.8 7898.1 3904.9 31792 1 1 1 1 1 1 1 1 1 1 4646 387 4085 4356 5159 5159 621 SPEAQPK 7 Phospho (STY) _S(ph)PEAQPK_ S(1)PEAQPK S(57.55)PEAQPK 0 0 1 0 P55265 P55265 P55265 ADAR Double-stranded RNA-specific adenosine deaminase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.346557617188 2 418.681126 835.347699 37974.179132261 2.1396 0.00089582 547350 229.16 547350 229.16 647.844239716361 31.956 0.59244 31.956 31.674 32.267 0 61 19 4 0.959265254096253 0.0013368451611195 0.0326187525457284 0.037209 1 7114 57.55 29.537 1 107310000 17653 14787 21635 18854 16126 20665 14357 18414 17551 5397.2 16720 13992 21485 19140 16668 20615 14787 18720 17182 5508.3 1 1 1 1 1 1 1 1 1 1 4647 722 4086 4357 5160 5160 1204 SPEAVGPELEAEEK 14 Phospho (STY) _S(ph)PEAVGPELEAEEK_ S(1)PEAVGPELEAEEK S(159.4)PEAVGPELEAEEK 0 0 1 0 Q96N64 Q96N64 Q96N64 PWWP2A PWWP domain-containing protein 2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.341003417969 3 522.230793 1563.67055 37734.010790922 1.983 0.0010356 292550 152.78 292550 152.78 675.341547202764 66.912 0.86613 66.912 66.432 67.299 0 69 29 3 0.97578359639578 0.00411892703126238 0.0734158378412655 3.9374E-07 1 15708 159.4 131.91 1 16146000 11754 12572 12438 13740 10946 12599 11264 11393 13611 7159.6 11125 11883 12468 14018 11202 12678 11515 11690 13330 7005.3 1 1 1 1 1 1 1 1 1 1 4648 1718 4087 4358 5161 5161 3162 SPEDQLGK 8 Phospho (STY) _S(ph)PEDQLGK_ S(1)PEDQLGK S(130.01)PEDQLGK 0 0 1 0 Q9UK61 Q9UK61 Q9UK61 FAM208A Protein FAM208A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.3671875 2 477.202422 952.390292 37897.5586539998 2.4454 0.0011669 480220 229.16 480220 229.16 706.365372380828 49.779 0.73032 49.779 49.453 50.183 7.1054E-15 57 24 3 0.936975414161383 0.00109463418390064 0.0425702606646076 0.00039277 1 11533 130.01 74.922 1 16657000 29631 19889 30962 20665 20689 29229 22042 24984 20882 7092.1 28043 18793 30977 21309 21620 28875 22340 25439 20653 7256.3 1 1 1 1 1 1 1 1 1 1 4649 2167 4088 4359 5162 5162 3901 SPEEPSTPGTVVSSPSISTPPIVPDIQK 28 Phospho (STY) _SPEEPSTPGTVVSSPSIST(ph)PPIVPDIQK_ SPEEPSTPGT(0.002)VVS(0.196)S(0.196)PS(0.196)IS(0.182)T(0.228)PPIVPDIQK S(-38.92)PEEPS(-27.81)T(-27.4)PGT(-20.83)VVS(-0.67)S(-0.67)PS(-0.67)IS(-0.97)T(0.67)PPIVPDIQK 0 0 1 0 O94913 O94913 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.447265625 4 732.36378 2925.42602 35177.8705049 1.946 0.0014252 156450 114.58 156460 114.58 847.195189872925 90.388 0.34 90.388 90.221 90.561 0 34 11 4 0.831970259331707 0.00155837158305597 0.0503154787879815 0.016146 1 21085 76.198 60.256 9 12867000 4244.2 5263.6 5000.4 3816.4 4512.1 2926.9 5008 5349.2 5341.3 17371 4018.9 4964.1 4986.6 3992.5 4615.1 3036.6 5083 5795.2 5256.2 16481 1 1 1 1 1 1 1 1 1 1 4650 227 4089 4360 5163 5163 4354 SPEGTPQK 8 Phospho (STY) _S(ph)PEGTPQK_ S(1)PEGTPQK S(40.11)PEGT(-40.11)PQK 0 0 1 0 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.361083984375 2 462.19714 922.379727 36959.1372582602 1.2199 0.00056384 495810 229.16 495810 229.16 691.360073922043 34.12 0.46497 34.12 33.905 34.37 0 25 15 2 0.962430565278789 0.00124278922142838 0.0152008114936526 0.0012004 1 7645 110.47 78.539 2 29049000 28296 33650 25631 32718 15566 27369 15196 24609 37331 4892.6 26766 31782 25838 33565 16407 27647 16092 24939 35895 5176.5 1 1 1 1 1 1 1 1 1 1 4651 1387 4090 4361 5164 5164 2519 SPEIHRR 7 Phospho (STY) _S(ph)PEIHRR_ S(1)PEIHRR S(81.97)PEIHRR 0 0 1 1 Q9NYF8;Q9Y2W1 Q9NYF8;Q9Y2W1 Q9NYF8 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 401.877593994141 3 325.490436 973.449478 49292.0165149969 0.51985 0.00016921 234680 76.387 234680 76.388 401.8774603485 22.585 0.3758 22.585 22.401 22.776 0 22 12 2 0.785730649293008 0.00347273910492861 0.0234741380552462 0.0094721 1 5082 81.972 53.876 1 4288400 5139.3 6647.7 5500.9 6748.5 7392.2 6615.2 7519.9 5989.5 6313.3 6340.4 4864.5 6280.4 5541.7 6920.9 7390.6 6640.8 7615.4 6223.2 6280.5 6108.9 1 1 1 1 1 1 1 1 1 1 4652 2072;2257 4091 4362 5165 5165 3750;4176 SPENTEGK 8 Phospho (STY) _S(ph)PENTEGK_ S(1)PENTEGK S(64.99)PENT(-64.99)EGK 0 0 1 0 Q15651 Q15651 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.348815917969 2 471.18423 940.353906 37982.4712414032 2.4839 0.0011704 486360 229.16 486360 229.16 700.347711271645 31.265 0.83233 31.265 30.757 31.589 0 51 27 2 0.925768214054425 0.00202660658676454 0.0651363255506797 0.0011028 1 6983 112.83 60.555 2 13970000 19179 10371 20553 11185 29175 20143 29048 20752 11364 3338.4 18154 9802.2 20722 11579 29080 19804 29090 20893 11963 3623.8 1 1 1 1 1 1 1 1 1 1 4653 1085 4092 4363 5166 5166 1882 SPERPTGDLR 10 Phospho (STY) _S(ph)PERPTGDLR_ S(1)PERPTGDLR S(48.35)PERPT(-48.35)GDLR 0 0 1 1 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.858825683594 2 604.276984 1206.53942 37047.7848429996 1.8047 0.0010906 189620 114.58 189620 114.58 718.858243756942 31.97 0.71195 31.97 31.73 32.442 0 62 23 3 0.954375793262645 0.00257365923063785 0.102155480884229 0.00040243 1 7126 101.72 54.013 2 63468000 16792 14216 16150 15394 12013 15652 12063 14574 15292 2814.5 15887 13436 16248 15739 12438 15670 12365 14745 14952 2987.5 1 1 1 1 1 1 1 1 1 1 4654 1183 4093 4364 5167 5167 2066 SPESCSKPEK 10 Phospho (STY) _S(ph)PESCSKPEK_ S(1)PESCSKPEK S(35.63)PES(-35.63)CS(-46.32)KPEK 0 0 1 1 Q03111 Q03111 Q03111 MLLT1 Protein ENL MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 639.333251953125 3 410.168699 1227.48427 37694.2164177227 2.1993 0.00090207 558700 229.16 558710 229.16 639.331409264906 36.511 0.65897 36.511 36.206 36.865 0 74 22 5 0.951076065579385 0.00418287786632087 0.0706283209038646 0.006212 1 8197 81.625 56.831 3 142880000 38243 25211 35121 21720 26405 32735 30392 32819 27594 2594.8 36176 23796 35445 22691 27364 32327 30668 32995 27346 3202.8 1 1 1 1 1 1 1 1 1 1 4655 856 4094 4365 5168 5168 1383 SPFEGAVTESQSLFSDNFR 19 Phospho (STY) _S(ph)PFEGAVTESQSLFSDNFR_ S(1)PFEGAVTESQSLFSDNFR S(43.99)PFEGAVT(-43.99)ES(-89.12)QS(-105.9)LFS(-112.32)DNFR 0 0 1 0 O95628 O95628 O95628 CNOT4 CCR4-NOT transcription complex subunit 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.709838867188 3 733.319441 2196.93649 37420.7380702185 1.8916 0.0013871 104170 76.388 104170 76.389 809.707436483332 100.45 0.22326 100.45 100.31 100.53 0 16 7 4 0.526362978127336 0.000509533136242411 0.0216754351145749 3.7285E-05 1 23505 118.72 98.881 5 15993000 7081.7 7621.8 6695.8 7170.4 6300.9 7437.4 7383.7 6778.7 8742.4 33771 6699.7 7197.5 6761.7 7394.2 6434.1 7498.3 7501.2 7842.7 8568.5 31956 1 1 1 1 1 1 1 1 1 1 4656 253 4095 4366 5169 5169 425 SPFLKPDER 9 Phospho (STY) _S(ph)PFLKPDER_ S(1)PFLKPDER S(57.79)PFLKPDER 0 0 1 1 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 543.295776367188 3 390.18479 1167.53254 43589.7644092767 1.11 0.00043312 391550 152.78 391550 152.78 542.960337314362 58.831 1.2244 58.831 58.141 59.365 0 111 41 4 0.751699831156528 0.00253642516999491 0.0271890610770224 0.019219 1 13731 57.792 29.56 1 30822000 13257 15256 15391 16857 9433.8 14188 8823.5 13535 15526 3256 12552 14421 15301 17168 9922.9 14338 9194.5 13700 15036 3379.2 1 1 1 1 1 1 1 1 1 1 4657 1953 4096 4367 5170 5170 3558 SPGAFDMSGVR 11 Phospho (STY) _S(ph)PGAFDMSGVR_ S(1)PGAFDMSGVR S(81.59)PGAFDMS(-81.59)GVR 0 0 1 0 Q9Y6I3 Q9Y6I3 Q9Y6I3 EPN1 Epsin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.829833984375 2 602.246838 1202.47912 38331.9191395754 1.6181 0.0009745 190260 114.58 190260 114.58 716.828185100639 65.597 0.46832 65.597 65.399 65.867 0 42 15 4 0.981701214368871 0.00155969426966555 0.0588958178231871 0.00014371 1 15407 120.55 73.484 2 11069000 11659 20845 11902 17672 10815 10344 9461.7 13631 21203 11479 11033 19674 11955 18221 11031 10758 10018 13892 20423 11125 1 1 1 1 1 1 1 1 1 1 4658 2314 4097 4368 5171 5171 4268 SPGAPGPLTLK 11 Phospho (STY) _S(ph)PGAPGPLTLK_ S(1)PGAPGPLTLK S(88.94)PGAPGPLT(-88.94)LK 0 0 1 0 Q15942 Q15942 Q15942 ZYX Zyxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.449768066406 2 559.286289 1116.55803 35579.349758405 2.1766 0.0012173 409740 229.16 409740 229.16 788.449291186974 73.679 0.79847 73.679 73.3 74.098 0 100 27 5 0.915819357497368 0.0028307035290673 0.0529225213484718 1.2307E-06 2 17246 143.42 97.423 2 282540000 53022 35815 60515 35304 34026 55236 43977 44734 37941 34439 50201 33830 60199 36600 36229 54409 44121 46317 37692 33464 2 2 2 2 2 2 2 2 2 2 4659 1099 4098 4369 5172;5173 5172 1908 SPGASNFSTLPK 12 Phospho (STY) _S(ph)PGASNFSTLPK_ S(0.984)PGAS(0.016)NFSTLPK S(18.01)PGAS(-18.01)NFS(-58.98)T(-82.12)LPK 0 0 1 0 Q9Y4E8 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.975280761719 3 429.198987 1284.57513 40922.5087019073 1.8204 0.00078132 355950 152.78 355960 152.78 581.974235662965 67.262 0.69352 67.262 66.921 67.615 0 81 23 5 0.987189832940985 0.00618988009879261 0.115911243818485 7.5838E-05 1 15763 120.13 90.322 4 91289000 11254 19850 11054 18256 5911 11976 5582.4 12374 22929 2667.5 10649 18743 11079 18741 6313.9 12294 6173.2 12477 21889 2798.2 1 1 1 1 1 1 1 1 1 1 4660 2278 4099 4370 5174 5174 4213;4214 SPGCRPLPSAGSPTPTTHEIVTVGDPLLSSGLR 33 Phospho (STY) _SPGCRPLPSAGSPT(ph)PTTHEIVTVGDPLLSSGLR_ S(0.008)PGCRPLPS(0.02)AGS(0.321)PT(0.648)PT(0.001)T(0.001)HEIVTVGDPLLSSGLR S(-18.91)PGCRPLPS(-15.11)AGS(-3.06)PT(3.06)PT(-27.02)T(-27.02)HEIVT(-94.84)VGDPLLS(-137.92)S(-137.56)GLR 0 0 1 1 Q03164 Q03164 Q03164 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 917.468627929688 4 859.928719 3435.68577 30646.3926272047 1.3114 0.0011278 66623 57.291 66624 57.292 917.722513891908 84.14 0.37196 84.14 83.927 84.299 0 28 12 4 0.473101171594831 0.00107632936069308 0.0131036587273675 5.4532E-08 1 19656 151.18 134.38 9 12895000 4616.5 4406.8 4853 4548.7 3738.7 5440.7 4942.6 5838.5 5781.6 24374 4369.3 4163.7 4861.7 4676.1 3877.7 5464.5 4996.3 6575.5 5669.1 23086 1 1 1 1 1 1 1 1 1 1 4661 857 4100 4371 5175 5175 4511 SPGEPGGAAPER 12 Phospho (STY) _S(ph)PGEPGGAAPER_ S(1)PGEPGGAAPER S(99.57)PGEPGGAAPER 0 0 1 0 Q96EB6 Q96EB6 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.334106445313 2 602.753342 1203.49213 37071.8869533307 1.8453 0.0011123 190100 114.58 190100 114.58 717.334289567815 29.193 0.50152 29.193 28.987 29.488 0 25 16 2 0.970266526471886 0.001210064320455 0.0324724007849112 0.0012314 1 6503 99.568 63.011 1 10085000 10826 10278 9660.5 9623.4 6647.1 10345 6843.3 10440 10781 2980.5 10240 9705.9 9758.1 9932.6 6930 10344 7064.3 10558 10470 3048.1 1 1 1 1 1 1 1 1 1 1 4662 1670 4101 4372 5176 5176 3076 SPGETSKPR 9 Phospho (STY) _S(ph)PGETSKPR_ S(1)PGETSKPR S(42.76)PGET(-42.76)S(-42.76)KPR 0 0 1 1 Q9UNZ2 Q9UNZ2 Q9UNZ2 NSFL1C NSFL1 cofactor p47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.898010253906 2 519.734421 1037.45429 36921.6398037117 2.7064 0.0014066 440920 229.16 440920 229.16 748.895867110279 28.141 0.28315 28.141 27.981 28.264 0 18 9 3 0.631329881879276 0.000651793652564446 0.0247785837740505 0.040922 1 6276 51.762 34.849 3 6190600 6504.4 9585.4 6117.4 8253.8 8503.8 7568.5 7639.9 8326.4 9870.8 3277.1 6153.3 9047.4 6209.7 8545 8478.7 7632.6 7879.3 8421.4 9644.9 3278.5 1 1 1 1 1 1 1 1 1 1 4663 2210 4102 4373 5177 5177 4000 SPGHMVILDQTK 12 Oxidation (M),Phospho (STY) _S(ph)PGHM(ox)VILDQTK_ SPGHM(1)VILDQTK S(1)PGHMVILDQTK SPGHM(135.61)VILDQTK S(102.73)PGHMVILDQT(-102.73)K 0 1 1 0 Q9NWH9 Q9NWH9 Q9NWH9 SLTM SAFB-like transcription modulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.330627441406 3 474.554665 1420.64217 38860.0847181381 1.7637 0.00083696 321930 152.78 321940 152.78 627.330211136659 52.463 0.6286 52.463 52.155 52.783 0 42 21 2 0.971957899998884 0.00328158328893537 0.0736342820802796 1.3461E-05 2 12180 135.61 91.816 2 69707000 26951 38367 28998 37528 29691 27289 30239 31995 43053 6460 25511 36239 29091 38420 30110 27881 31106 32105 41936 6823.3 2 2 2 2 2 2 2 2 2 2 4664 2054 4103 4374 5178;5179 5178 218 3719 SPGHMVILDQTK 12 Phospho (STY) _S(ph)PGHMVILDQTK_ S(1)PGHMVILDQTK S(155.83)PGHMVILDQT(-155.83)K 0 0 1 0 Q9NWH9 Q9NWH9 Q9NWH9 SLTM SAFB-like transcription modulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622 3 469.223027 1404.64725 39538.5863053835 1.7411 0.00081698 325590 152.78 325590 152.78 621.998591281406 66.96 0.83984 66.96 66.635 67.475 0 117 28 5 0.996146867638645 0.0109358104951833 0.40872083560027 1.9883E-16 1 15686 235.93 188.02 2 201780000 17707 25224 17876 26954 18589 18136 18933 20454 27586 3496.8 16756 23838 18000 27428 18835 18608 19493 20532 26852 3766 1 1 1 1 1 1 1 1 1 1 4665 2054 4103 4375 5180 5180 3719 SPGLVPPSPEFAPR 14 2 Phospho (STY) _S(ph)PGLVPPS(ph)PEFAPR_ S(1)PGLVPPS(1)PEFAPR S(102.08)PGLVPPS(102.08)PEFAPR 0 0 2 0 Q9H5H4 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 920.4365234375 2 805.854414 1609.69428 32643.3184177743 1.8026 0.0014527 142190 114.58 142190 114.58 920.934491015504 78.51 0.89458 78.51 78.092 78.986 0 62 30 3 0.957885796493437 0.000332272150371249 0.0174921084473356 0.00087107 1 18371 102.08 71.014 1 8049500 5415.6 8099.2 5243.7 7613 9535 5509.2 9406.3 8339.5 7536.7 39470 5123.9 7648.2 5342.3 7812.6 9419.1 5725.9 9529.7 9444.7 7515.8 37359 1 1 1 1 1 1 1 1 1 1 4666 1943 4104 4376 5181 5181 3521;3522 SPGMLEPLGSSR 12 Phospho (STY) _S(ph)PGMLEPLGSSR_ S(1)PGMLEPLGSSR S(58.85)PGMLEPLGS(-58.85)S(-65.7)R 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.879272460938 2 655.794153 1309.57375 35985.3305156233 1.9495 0.0012785 174720 114.58 174730 114.58 770.376327949289 70.958 0.62992 70.958 70.655 71.285 0 50 21 3 0.971360123380377 0.00158451239362595 0.0140578720380207 0.01254 1 16648 78.932 59.661 3 34146000 18785 14327 22952 15082 8930.7 22246 8454.4 16398 16983 12995 17791 13538 22699 15555 9892.1 21930 8862.3 17067 16396 12616 1 1 1 1 1 1 1 1 1 1 4667 2226 4105 4377 5182 5182 4036 SPGNLTEREELAGSLAR 17 Phospho (STY) _S(ph)PGNLTEREELAGSLAR_ S(0.984)PGNLT(0.016)EREELAGSLAR S(18.03)PGNLT(-18.03)EREELAGS(-43.32)LAR 0 0 1 1 Q9H0F6 Q9H0F6 Q9H0F6 SHARPIN Sharpin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.689758300781 3 627.301833 1878.88367 36527.0081072524 2.2688 0.0014232 121770 76.388 121770 76.39 703.689397867462 63.114 0.38176 63.114 62.874 63.255 0 31 12 3 0.888123276963898 0.000983534213492876 0.0217672721626955 0.035065 1 14837 49.924 28.83 3 7093900 6071.2 6419 6897.6 7298 6647.7 7287.5 5868.3 6621.7 6858.4 7237.8 5748 6068.8 6893.4 7439.5 6750.8 7310.4 6037.9 6886 6725.2 6968.5 1 1 1 1 1 1 1 1 1 1 4668 1904 4106 4378 5183 5183 3460 SPGNTSQPPAFFSK 14 Phospho (STY) _S(ph)PGNTSQPPAFFSK_ S(0.993)PGNT(0.007)SQPPAFFSK S(21.41)PGNT(-21.41)S(-41.38)QPPAFFS(-87.2)K 0 0 1 0 Q9Y618 Q9Y618 Q9Y618 NCOR2 Nuclear receptor corepressor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.67431640625 3 515.564218 1543.67082 37828.348076179 2.1771 0.0011224 296330 152.78 296330 152.78 668.673630330937 76.946 0.63439 76.946 76.647 77.281 0 81 21 5 0.953315430420824 0.00451236042880593 0.0561503074472819 0.0020424 1 18011 96.143 76.932 4 47267000 10721 9013.1 11385 9112.8 6713 10815 8016.4 10658 9802.8 5737.5 10147 8514.9 11371 9378 7108.3 10773 8146.3 10870 9596.7 5649.2 1 1 1 1 1 1 1 1 1 1 4669 2306 4107 4379 5184 5184 4253;4856 SPGPAADGPIDLSK 14 Phospho (STY) _S(ph)PGPAADGPIDLSK_ S(1)PGPAADGPIDLSK S(133)PGPAADGPIDLS(-133)K 0 0 1 0 Q8IX07 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 621.660339355469 3 468.885068 1403.63338 39870.7667643956 1.1348 0.00053208 325830 152.78 325830 152.78 621.659809178788 70.468 0.46741 70.468 70.215 70.683 1.4211E-14 38 15 3 0.966876983351067 0.00100997312584283 0.00380749734542397 6.0977E-07 1 16528 150.27 105.19 2 26624000 7276.9 15804 7380.8 13705 14151 6972.8 13409 12724 16613 3767.7 6886.2 14917 7507.6 14092 13953 7368.9 13772 12654 16256 3842.2 1 1 1 1 1 1 1 1 1 1 4670 1421 4108 4380 5185 5185 2589 SPGPIVSR 8 Phospho (STY) _S(ph)PGPIVSR_ S(1)PGPIVSR S(58.94)PGPIVS(-58.94)R 0 0 1 0 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.299499511719 2 446.718043 891.421532 41942.2455394894 1.1521 0.00051464 256500 114.58 256500 114.58 561.299547148164 40.932 0.45114 40.932 40.744 41.195 0 30 15 3 0.645097067146906 0.00100254974090932 0.0132785001484545 0.014933 1 9340 77.072 54.685 2 13631000 17851 21199 18728 22121 14237 19294 14452 18033 23434 5447.2 16894 20032 18753 22612 14724 19460 14947 18302 22741 5546.5 1 1 1 1 1 1 1 1 1 1 4671 1387 4109 4381 5186 5186 2522 SPGPPALK 8 Phospho (STY) _S(ph)PGPPALK_ S(1)PGPPALK S(61.16)PGPPALK 0 0 1 0 Q8IU81 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.874084472656 2 423.709686 845.40482 39578.8827221801 2.6501 0.0011229 540850 229.16 540850 229.16 652.872913944529 53.587 0.76693 53.587 53.235 54.002 0 60 25 3 0.776755802362612 0.0026167930650115 0.0497181324129645 0.028052 1 12492 61.161 48.936 1 35758000 27675 56929 29458 58012 19595 30283 18083 34311 63960 6629.2 26195 53785 29436 59053 20489 31655 19736 34460 61163 7036.2 1 1 1 1 1 1 1 1 1 1 4672 1407 4110 4382 5187 5187 2563 SPGRPPK 7 Phospho (STY) _S(ph)PGRPPK_ S(1)PGRPPK S(90.76)PGRPPK 0 0 1 1 Q14739 Q14739 Q14739 LBR Lamin-B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 426.244201660156 3 273.468861 817.384753 47774.1617032802 0.098452 2.6924E-05 558660 152.78 558660 152.78 426.244411468983 29.201 0.68085 29.201 28.837 29.518 3.5527E-15 68 22 5 0.752958936786106 0.0076908378484102 0.121565751451083 0.0050592 1 6486 90.761 55.661 1 73229000 39415 62056 39356 61381 65064 38923 60899 57679 62593 3263.3 37297 58618 39940 62704 64452 40258 62237 57228 61688 4407.7 1 1 1 1 1 1 1 1 1 1 4673 1026 4111 4383 5188 5188 1758 SPGSISYLPSFFTK 14 Phospho (STY) _S(ph)PGSISYLPSFFTK_ S(0.966)PGS(0.034)ISYLPSFFTK S(14.57)PGS(-14.57)IS(-46.64)Y(-92.48)LPS(-147.42)FFT(-178.22)K 0 0 1 0 O75376 O75376 O75376 NCOR1 Nuclear receptor corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.69873046875 3 537.588252 1609.74293 37186.3916142904 0.92882 0.00049932 284190 152.78 284190 152.78 690.698274160204 101.49 0.22437 101.49 101.39 101.61 0 24 7 5 0.990425953101978 0.0497883953004515 1 1.2352E-10 1 23857 190.82 170.16 6 219820000 79167 87048 88694 81184 38338 88668 42179 83025 88932 58261 74948 82198 88153 83836 41977 88581 44031 85254 85766 56781 1 1 1 1 1 1 1 1 1 1 4674 180 4112 4384 5189 5189 312 SPGSPVGEGTGSPPK 15 Phospho (STY) _SPGS(ph)PVGEGTGSPPK_ SPGS(1)PVGEGTGSPPK S(-44.37)PGS(44.37)PVGEGT(-70.54)GS(-81.94)PPK 0 0 1 0 P35611 P35611 P35611 ADD1 Alpha-adducin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 946.484436035156 2 717.319046 1432.62354 32150.9910763565 1.8733 0.0013437 319470 229.16 319470 229.16 946.48216949321 44.223 0.69255 44.223 43.903 44.596 -7.1054E-15 69 23 4 0.978706778624185 0.00093172973589882 0.0357347360152503 6.9987E-16 1 10126 235.88 207.48 4 36026000 24989 27793 25446 25435 14075 22959 15476 21921 26171 4070.2 23648 26242 25460 26220 14985 23118 15978 22151 25369 4339.9 1 1 1 1 1 1 1 1 1 1 4675 549 4113 4385 5190 5190 892 SPGSTPTTPTSSQAPQK 17 Phospho (STY) _SPGSTPTT(ph)PTSSQAPQK_ S(0.001)PGS(0.001)T(0.006)PT(0.135)T(0.856)PTSSQAPQK S(-27.85)PGS(-28.56)T(-21.32)PT(-8.04)T(8.04)PT(-37.34)S(-52.44)S(-58.91)QAPQK 0 0 1 0 P35658 P35658 P35658 NUP214 Nuclear pore complex protein Nup214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.376098632813 3 584.599768 1750.77747 37001.0349016298 2.2278 0.0013024 261330 152.77 261330 152.78 737.708943345731 38.831 0.5027 38.831 38.61 39.112 -7.1054E-15 41 16 3 0.743657189460186 0.00454122166621339 0.0599131310212304 7.0878E-05 1 8798 121.77 98.339 8 52747000 20528 31500 18440 29976 15416 16509 14093 20546 31389 5348 19417 29748 18649 30655 15820 17209 14883 20614 30238 5511.3 1 1 1 1 1 1 1 1 1 1 4676 551 4114 4386 5191 5191 896;897;4451 SPGSTPTTPTSSQAPQK 17 Phospho (STY) _S(ph)PGSTPTTPTSSQAPQK_ S(0.794)PGS(0.178)T(0.028)PT(0.001)TPTSSQAPQK S(6.49)PGS(-6.49)T(-14.59)PT(-31.4)T(-53.96)PT(-81.21)S(-87.21)S(-93.63)QAPQK 0 0 1 0 P35658 P35658 P35658 NUP214 Nuclear pore complex protein Nup214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.709899902344 3 584.599768 1750.77747 36720.6575295064 1.6316 0.00095385 261330 152.78 261330 152.78 737.375108933069 41.014 0.62361 41.014 40.629 41.253 0 80 21 5 0.731628134123631 0.00323361409202661 0.0133544798371578 3.7421E-07 1 9297 142.97 121.67 8 57583000 18654 25809 18988 31188 19833 20221 18957 22379 33496 5786.6 17653 24412 19109 31518 20078 20796 19737 22539 32434 5966.7 1 1 1 1 1 1 1 1 1 1 4677 551 4114 4386 5192 5192 896;897;4451 SPGSTPTTPTSSQAPQK 17 2 Phospho (STY) _SPGS(ph)TPTT(ph)PTSSQAPQK_ S(0.06)PGS(0.776)T(0.156)PT(0.014)T(0.992)PT(0.002)SSQAPQK S(-11.1)PGS(6.97)T(-6.97)PT(-19.74)T(22.72)PT(-26.51)S(-41.36)S(-48.55)QAPQK 0 0 2 0 P35658 P35658 P35658 NUP214 Nuclear pore complex protein Nup214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.366516113281 3 611.255211 1830.7438 35762.9841647673 1.5023 0.00091826 249940 152.77 249940 152.78 764.030533216509 40.879 1.1845 40.879 40.384 41.569 0 147 40 5 0.976502711522788 0.00228455155777189 0.0244155081676979 2.5874E-05 2 9229 134.29 112.24 28 185950000 21233 27181 21045 27146 17398 22581 17110 22650 27394 13745 20091 25676 21157 27802 17877 22865 17712 23131 26593 13467 2 2 2 2 2 2 2 2 2 2 4678 551 4114 4387 5193;5194 5193 896;897;4451 SPGYEPR 7 Phospho (STY) _S(ph)PGYEPR_ S(1)PGYEPR S(50.66)PGY(-50.66)EPR 0 0 1 0 Q9H5H4 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.759948730469 2 443.17875 884.342948 41111.7719212675 1.5645 0.00069335 258540 114.58 258540 114.58 557.759228154896 32.722 0.52593 32.722 32.442 32.968 0 39 17 3 0.863643029636465 0.0011618176300663 0.0178237834723034 0.0085496 1 7341 90.761 32.335 2 23868000 12919 17598 13087 15511 17102 13320 15671 15742 17034 2598.6 12226 16612 13215 16019 17100 13485 16058 15775 16750 2811.2 1 1 1 1 1 1 1 1 1 1 4679 1943 4115 4388 5195 5195 3523 SPGYESESSRYESQNTELK 19 Phospho (STY) _S(ph)PGYESESSRYESQNTELK_ S(1)PGYESESSRYESQNTELK S(69.96)PGY(-70.3)ES(-69.96)ES(-85.58)S(-91.63)RY(-135.46)ES(-122.54)QNT(-146.92)ELK 0 0 1 1 Q9H5H4 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 910.429382324219 3 757.653148 2269.93762 33626.7453682243 0.74875 0.00056729 201640 152.78 201640 152.78 910.763213629363 51.893 0.29419 51.893 51.747 52.041 0 27 9 4 0.767702350145524 0.000881459510065712 0.0107878025231136 5.8376E-11 1 12082 180.9 162.6 8 16985000 10315 16581 10618 15134 15288 11198 19399 15497 17031 18753 9761.6 15655 10739 15564 15294 11489 19485 15943 16905 18017 1 1 1 1 1 1 1 1 1 1 4680 1943 4116 4389 5196 5196 3524 SPHEAGFCVYLK 12 Phospho (STY) _S(ph)PHEAGFCVYLK_ S(1)PHEAGFCVYLK S(67)PHEAGFCVY(-67)LK 0 0 1 0 Q9NTZ6 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.66259765625 3 496.551144 1486.6316 39114.8568003852 2.0739 0.0010298 307670 152.78 307670 152.78 649.326252914174 77.63 0.75453 77.63 77.31 78.064 1.4211E-14 83 25 5 0.982669033046448 0.00422386505440147 0.0718375340153267 2.1556E-05 1 18167 133.48 99.597 2 28317000 6756.6 7786.7 7122.7 8149.4 7648.7 6731.8 9791.7 9858.2 7503.5 22357 6394.9 7357.9 7161.6 8322.6 7759 6892.2 9801.6 10441 7500.7 21280 1 1 1 1 1 1 1 1 1 1 4681 2034 4117 4390 5197 5197 3696 SPHQLLSPSSFSPSATPSQK 20 Phospho (STY) _S(ph)PHQLLSPSSFSPSATPSQK_ S(1)PHQLLSPSSFSPSATPSQK S(36.99)PHQLLS(-36.99)PS(-76.62)S(-94.29)FS(-142.14)PS(-163.79)AT(-173.21)PS(-182.52)QK 0 0 1 0 Q14181 Q14181 Q14181 POLA2 DNA polymerase alpha subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 874.786254882813 3 721.675448 2162.00451 33732.9955033609 1.6295 0.0011759 211690 152.78 211700 152.78 874.784561797006 73.502 0.59861 73.502 73.129 73.728 0 58 20 4 0.91471776598534 0.00257744400666739 0.019755670914506 2.2151E-11 1 17233 196.14 164.91 8 16855000 8856 9516.2 8721.4 9327.6 5526.6 10151 11940 15438 11713 21781 8379.5 8988.6 8762.6 9602.1 5887.5 10245 11839 15937 11566 20867 1 1 1 1 1 1 1 1 1 1 4682 996 4118 4391 5198 5198 1696 SPHSKSPAEQR 11 2 Phospho (STY) _S(ph)PHS(ph)KSPAEQR_ S(0.998)PHS(0.597)KS(0.405)PAEQR S(25.2)PHS(1.69)KS(-1.69)PAEQR 0 0 2 1 P10398 P10398 P10398 ARAF Serine/threonine-protein kinase A-Raf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.630310058594 3 461.853313 1382.53811 40958.2737427816 1.6129 0.00074494 330790 152.78 330790 152.78 614.629282466123 24.687 0.75981 24.687 24.511 25.27 3.5527E-15 78 25 4 0.706201965662757 0.00369132645495221 0.0310956496249684 0.012311 1 5517 67.415 32.544 3 9441600 4936.8 13627 4766.5 15160 7656.4 5443.1 8048.9 9533.3 14963 3093.6 4670.8 12881 4845.5 15317 7611.2 5946.7 8363.6 9497.3 14470 3133.6 1 1 1 1 1 1 1 1 1 1 4683 352 4119 4392 5199 5199 570;571 SPILEEK 7 Phospho (STY) _S(ph)PILEEK_ S(1)PILEEK S(98.3)PILEEK 0 0 1 0 Q12830 Q12830 Q12830 BPTF Nucleosome-remodeling factor subunit BPTF MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.376525878906 2 448.212259 894.409965 37247.9937234928 2.1092 0.00094536 511280 229.16 511280 229.16 677.37433554148 60.929 1.3742 60.929 60.429 61.803 0 100 46 3 0.841674928430979 0.00427385189278671 0.103958340873803 0.0041577 1 14269 98.299 22.445 1 55627000 44103 46696 46111 44864 45110 43891 49202 44996 48223 12123 41740 44101 46311 46162 45894 44074 49860 45456 47623 12457 1 1 1 1 1 1 1 1 1 1 4684 904 4120 4393 5200 5200 1490 SPILLPK 7 Phospho (STY) _S(ph)PILLPK_ S(1)PILLPK S(89.7)PILLPK 0 0 1 0 Q8TD16 Q8TD16 Q8TD16 BICD2 Protein bicaudal D homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.402221679688 2 424.23808 846.461606 39273.7915650363 2.4596 0.0010435 540180 229.16 540180 229.16 653.400784988675 78.141 0.82833 78.141 77.751 78.579 1.4211E-14 87 28 4 0.916993703621436 0.00261116116552942 0.0385848888884467 0.009169 1 18274 89.698 16.875 1 79810000 19000 22386 18173 21791 18208 16093 18060 20183 22643 6002.6 17976 21144 18346 22319 18478 16448 18516 20268 22147 6119.2 1 1 1 1 1 1 1 1 1 1 4685 1545 4121 4394 5201 5201 2836 SPIRQDR 7 Phospho (STY) _S(ph)PIRQDR_ S(1)PIRQDR S(103.31)PIRQDR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 394.206604003906 3 317.818441 950.433494 50245.9573793995 0.08678 2.758E-05 240350 76.388 240350 76.388 394.206322701406 24.576 0.404 24.576 24.398 24.802 0 33 13 4 0.955728928545683 0.00522583430402639 0.031587071597731 0.0013359 1 5491 103.31 38.471 1 11976000 13395 15047 14688 13651 9935.9 13567 9111.7 13075 15915 3689.9 12680 14207 14656 14100 10358 13604 9500.8 13245 15415 3777.1 1 1 1 1 1 1 1 1 1 1 4686 2226 4122 4395 5202 5202 4090 SPISDNSGCDAPGNSNPSLSVPSSAESEK 29 Phospho (STY) _S(ph)PISDNSGCDAPGNSNPSLSVPSSAESEK_ S(0.963)PIS(0.035)DNS(0.002)GCDAPGNSNPSLSVPSSAESEK S(14.34)PIS(-14.34)DNS(-27.99)GCDAPGNS(-99.67)NPS(-145.31)LS(-150.86)VPS(-163.97)S(-168.57)AES(-180.21)EK 0 0 1 0 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1143.85607910156 3 990.748399 2969.22337 29192.3348811663 0.793 0.00078567 154200 152.78 154200 152.78 1144.19220108578 62.532 0.46768 62.532 62.265 62.732 -7.1054E-15 48 15 5 0.966515016886137 0.0024169203674293 0.0360038457106212 8.0572E-12 1 14675 187.35 173.72 9 21849000 7063.1 5729.1 7423.2 6830.1 3938.5 7608.8 3814 7013.9 7517.2 5829.4 6684.9 5418.4 7411.1 6958.2 4204.3 7595.4 3989.7 7234.2 7260.1 5651.4 1 1 1 1 1 1 1 1 1 1 4687 1774 4123 4396 5203 5203 3272 SPISVPGGSALISNLGK 17 Phospho (STY) _S(ph)PISVPGGSALISNLGK_ S(0.892)PIS(0.108)VPGGSALISNLGK S(9.17)PIS(-9.17)VPGGS(-55.51)ALIS(-137.13)NLGK 0 0 1 0 P51610 P51610 P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.736083984375 3 559.625477 1675.8546 37404.1186444816 2.0326 0.0011375 273000 152.78 273000 152.78 712.401006892297 97.079 0.51979 97.079 96.752 97.272 0 60 17 5 0.990479928115124 0.00502250580396457 0.0589923819032727 1.2102E-07 1 22525 165.34 99.074 4 22303000 4654.3 8152.2 4895.9 7715.4 3577.5 5251.2 3710.5 6433.5 7335.1 9387.7 4405.1 7698.6 4900.1 7909 3713.6 5406 3869.8 6690.3 7083.8 8988.6 1 1 1 1 1 1 1 1 1 1 4688 681 4124 4397 5204 5204 1144 SPITSSPPK 9 Phospho (STY) _SPITSS(ph)PPK_ S(0.006)PIT(0.045)S(0.304)S(0.645)PPK S(-20.39)PIT(-11.53)S(-3.26)S(3.26)PPK 0 0 1 0 Q52LA3 Q52LA3 Q52LA3 LIN52 Protein lin-52 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.399597167969 2 497.236265 992.457977 36713.2064176978 1.65 0.00082045 460870 229.16 460870 229.16 726.3992925629 50.742 0.80399 50.742 50.304 51.108 0 61 27 3 0.761797873965837 0.000654283552667765 0.0146014811052335 0.019948 1 11823 63.694 24.39 4 20382000 61578 26495 59885 25332 32803 58975 34656 42324 24881 9516.9 58263 25022 60070 26622 34904 57421 34920 43386 24965 9940.9 1 1 1 1 1 1 1 1 1 1 4689 1144 4125 4398 5205 5205 1989 SPLAQMEEERR 11 Phospho (STY) _S(ph)PLAQMEEERR_ S(1)PLAQMEEERR S(147.07)PLAQMEEERR 0 0 1 1 Q16181 Q16181 Q16181 SEPT7 Septin-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.265930175781 3 475.877919 1424.61193 42249.0758171201 1.2467 0.00059326 160520 76.388 160520 76.388 552.265587631054 52.369 0.45111 52.369 52.127 52.578 0 39 15 3 0.987536867821895 0.00200955801373669 0.0505075621010534 7.5753E-07 1 12177 147.07 75.844 1 15446000 10098 8436.5 10321 7139.7 7355.6 10324 8152.6 8324 8359.3 1659.1 9556.3 7962.3 10345 7461.1 7651 10184 8266 8477 8239.4 1754.9 1 1 1 1 1 1 1 1 1 1 4690 1100 4126 4399 5206 5206 1911 SPLGGGGGSGASSQAACLK 19 Phospho (STY) _S(ph)PLGGGGGSGASSQAACLK_ S(1)PLGGGGGSGASSQAACLK S(34.11)PLGGGGGS(-34.11)GAS(-75.4)S(-97.7)QAACLK 0 0 1 0 Q68DK7 Q68DK7 Q68DK7 MSL1 Male-specific lethal 1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.0341796875 3 581.257347 1740.75021 36432.229423204 1.9874 0.0011552 262840 152.78 262840 152.78 734.368051540301 57.458 0.62939 57.458 57.131 57.76 0 104 21 6 0.852843744092089 0.00466250420789709 0.0818225086653559 4.6778E-07 1 13408 138.55 122.78 4 66835000 25843 22828 27360 20778 16641 27415 17639 22357 21532 8520.3 24460 21553 27333 21566 17538 27136 18014 22878 21080 8540.3 1 1 1 1 1 1 1 1 1 1 4691 1228 4127 4400 5207 5207 2167 SPLLAGGSPPQPVVPAHK 18 Phospho (STY) _SPLLAGGS(ph)PPQPVVPAHK_ S(0.002)PLLAGGS(0.998)PPQPVVPAHK S(-26.94)PLLAGGS(26.94)PPQPVVPAHK 0 0 1 0 Q8NFH5 Q8NFH5 Q8NFH5 NUP35 Nucleoporin NUP53 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.433776855469 3 611.320388 1830.93933 35705.574854368 1.8478 0.0011296 249910 152.78 249910 152.78 764.43267014947 71.41 0.74835 71.41 71.002 71.751 0 91 25 5 0.880495935502144 0.00707284188898058 0.170763654393611 0.0015716 1 16768 97.253 71.933 2 36347000 22273 28854 21277 27708 16554 23080 14616 23427 34045 24583 21072 27251 21420 28445 17069 23391 15503 24226 32768 23690 1 1 1 1 1 1 1 1 1 1 4692 1523 4128 4401 5208 5208 2802 SPLRRSPPR 9 Phospho (STY) _SPLRRS(ph)PPR_ S(0.009)PLRRS(0.991)PPR S(-20.44)PLRRS(20.44)PPR 0 0 1 2 Q96PK6 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 458.924468994141 3 382.536157 1144.58664 45564.7691776909 0.8103 0.00030997 199690 76.388 199690 76.388 458.923834455415 28.005 0.542 28.005 27.694 28.236 0 35 18 2 0.962408980808115 0.0049382107526715 0.0723759430303506 0.02079 1 6230 62.908 37.985 2 22851000 12062 11171 10478 10419 19271 12563 21247 15313 10809 2365.4 11408 10548 10753 10778 19055 12536 21247 15325 11108 2581.7 1 1 1 1 1 1 1 1 1 1 4693 1723 4129 4402 5209 5209 3169;3171 SPLSALAR 8 Phospho (STY) _S(ph)PLSALAR_ S(0.995)PLS(0.005)ALAR S(23.08)PLS(-23.08)ALAR 0 0 1 0 Q9BQG0 Q9BQG0 Q9BQG0 MYBBP1A Myb-binding protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 562.308959960938 2 447.725868 893.437182 41191.3777924457 1.5778 0.00070641 255920 114.58 255920 114.58 562.309495976693 66.801 0.69437 66.801 66.544 67.238 0 40 23 3 0.797804802754602 0.00152129703247813 0.0881934952272794 0.014945 1 15691 77.049 15.959 2 7366300 9942.7 10789 9774 13143 6460.1 8899.1 6344.8 9781.6 11981 4600.9 9407.7 10205 9810.8 13283 6755.1 9129.1 6618.3 9916 11582 4558.7 1 1 1 1 1 1 1 1 1 1 4694 1807 4130 4403 5210 5210 3318 SPLSSILFSALDSDTR 16 Phospho (STY) _SPLS(ph)SILFSALDSDTR_ S(0.306)PLS(0.347)S(0.347)ILFSALDSDTR S(-0.54)PLS(0)S(0)ILFS(-34.36)ALDS(-41.63)DT(-43.36)R 0 0 1 0 Q7Z3B3 Q7Z3B3 Q7Z3B3 KANSL1 KAT8 regulatory NSL complex subunit 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.341003417969 3 596.95203 1787.83426 NaN NaN NaN NaN NaN NaN NaN NaN 102.92 1 102.92 102.42 103.42 0 NaN NaN NaN 0.050176 1 24260 43.454 28.764 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4695 1330 4131 4404 5211 5211 2392;2393;2394 SPMMPENAENEGDALLQFTAEFSSR 25 2 Oxidation (M),Phospho (STY) _S(ph)PM(ox)M(ox)PENAENEGDALLQFTAEFSSR_ SPM(1)M(1)PENAENEGDALLQFTAEFSSR S(1)PMMPENAENEGDALLQFTAEFSSR SPM(233.49)M(233.49)PENAENEGDALLQFTAEFSSR S(220.24)PMMPENAENEGDALLQFT(-220.24)AEFS(-230.01)S(-230.95)R 0 2 1 0 Q9UNN5 Q9UNN5 Q9UNN5 FAF1 FAS-associated factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1038.45446777344 3 961.733145 2882.1776 30879.0744873927 0.7702 0.00074073 79426 76.386 79426 76.387 1038.45353230037 101.15 0.2315 101.15 101.04 101.27 0 19 7 5 0.938269699294284 0.0112089244940153 0.263190061099428 7.2317E-18 1 23744 233.49 221.53 4 90903000 7213.5 8170.8 10283 8929.3 9323 7605.6 10990 13531 8509.4 213280 6837.4 7723 10170 9100.8 9539 8158.5 11039 19770 8501.5 201140 1 1 1 1 1 1 1 1 1 1 4696 2207 4132 4405 5212 5212 232;233 3995 SPNREWEVLQPAPHQVITNLPEGVR 25 Phospho (STY) _S(ph)PNREWEVLQPAPHQVITNLPEGVR_ S(1)PNREWEVLQPAPHQVITNLPEGVR S(58.82)PNREWEVLQPAPHQVIT(-58.82)NLPEGVR 0 0 1 1 O75376 O75376 O75376 NCOR1 Nuclear receptor corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.054260253906 4 737.371003 2945.4549 36099.4666033075 1.9273 0.0014212 77696 57.291 77698 57.292 795.162014663535 81.449 0.37024 81.449 81.223 81.593 -1.4211E-14 17 12 2 0.280439713833353 0.000122427849062534 0.00577883817731517 0.013276 1 19047 73.805 56.867 2 9396600 6757.9 7681.4 7470 9021.1 5303.2 7396.2 5891.5 6838.1 9218.8 13159 6397.3 7264 7455.5 9154.7 5521.1 7503.9 6059.9 7277.3 8955.1 12549 1 1 1 1 1 1 1 1 1 1 4697 180 4133 4406 5213 5213 313 SPPADAIPK 9 Phospho (STY) _S(ph)PPADAIPK_ S(1)PPADAIPK S(61.44)PPADAIPK 0 0 1 0 P18754 P18754 P18754 RCC1 Regulator of chromosome condensation MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 478.931854248047 3 325.823081 974.447413 45801.1782655562 0.81794 0.0002665 468890 152.78 468890 152.78 478.598245016293 57.121 1.1013 57.121 56.603 57.704 0 93 37 3 0.927444518025164 0.00175680596461121 0.00960714195800432 0.014805 1 13329 61.435 34.32 1 21744000 8722.8 14122 9158.8 15218 15029 10411 15491 13793 14577 2256.4 8255.6 13347 9270.1 15481 14911 10697 15721 13772 14422 2443.9 1 1 1 1 1 1 1 1 1 1 4698 432 4134 4407 5214 5214 703 SPPASPESWK 10 Phospho (STY) _SPPAS(ph)PESWK_ SPPAS(1)PESWK S(-39.49)PPAS(38.17)PES(-38.17)WK 0 0 1 0 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 812.414123535156 2 583.249904 1164.48525 34294.3421953485 2.5387 0.0014807 392910 229.16 392910 229.16 812.412016160638 63.396 0.70218 63.396 62.99 63.692 0 75 23 4 0.725917121631814 0.00110886624485464 0.0403580597428064 0.00029845 1 14833 114.02 81.798 3 27375000 17239 14536 16507 14745 16971 18087 16111 18005 14848 13486 16310 13733 16668 15181 17182 18004 16407 18470 14704 13116 1 1 1 1 1 1 1 1 1 1 4699 1699 4135 4408 5215 5215 3132 SPPDGQSFR 9 Phospho (STY) _S(ph)PPDGQSFR_ S(1)PPDGQSFR S(57.85)PPDGQS(-57.85)FR 0 0 1 0 P78314 P78314 P78314 SH3BP2 SH3 domain-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.30078125 2 535.718771 1069.42299 39377.0789585298 1.864 0.00099859 213880 114.58 213880 114.58 650.3002107659 41.758 1.2545 41.758 40.911 42.165 0 67 43 2 0.784529603951741 0.000456594768293511 0.00648747803226805 0.0084599 1 9529 85.729 50.218 2 8969200 19395 14593 19747 15086 16641 19301 15508 16346 14974 6255.8 18354 13789 19824 15528 17054 19133 15825 16699 14798 6268.9 1 1 1 1 1 1 1 1 1 1 4700 793 4136 4409 5216 5216 1267 SPPEEPPDFCCPK 13 Phospho (STY) _S(ph)PPEEPPDFCCPK_ S(1)PPEEPPDFCCPK S(77.32)PPEEPPDFCCPK 0 0 1 0 Q9Y6K9 Q9Y6K9 Q9Y6K9 IKBKG NF-kappa-B essential modulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.986511230469 3 547.210458 1638.60955 37815.7959574024 1.7597 0.0009629 279190 152.78 279190 152.78 700.320249160723 64.747 0.92464 64.747 64.271 65.196 0 77 31 3 0.608356689872512 0.00100263478080872 0.0143842297468728 0.0084007 1 15216 77.325 64.764 1 8949300 14347 12787 14750 13018 12511 13054 12438 14246 15840 15893 13577 12081 14802 13353 12831 13128 12757 14722 15485 15295 1 1 1 1 1 1 1 1 1 1 4701 2316 4137 4410 5217 5217 4271 SPPEGDTTLFLSR 13 Phospho (STY) _S(ph)PPEGDTTLFLSR_ S(1)PPEGDTTLFLSR S(37.13)PPEGDT(-37.13)T(-40.91)LFLS(-82.51)R 0 0 1 0 Q9BTC0 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 864.925354003906 2 750.342521 1498.67049 NaN NaN NaN NaN NaN NaN NaN NaN 77.838 1 77.838 77.338 78.338 0 NaN NaN NaN 0.00035028 1 18247 101.88 65.185 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4702 1822 4138 4411 5218 5218 3338 SPPGAAASAAAKPPPLSAK 19 Phospho (STY) _S(ph)PPGAAASAAAKPPPLSAK_ S(0.999)PPGAAAS(0.001)AAAKPPPLSAK S(32.41)PPGAAAS(-32.41)AAAKPPPLS(-102.4)AK 0 0 1 1 Q7Z5L9 Q7Z5L9 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.104248046875 4 442.980289 1767.89205 40418.9655986656 1.5604 0.00069124 387990 171.87 387990 171.87 615.103710142419 61.698 1.0539 61.698 61.155 62.209 7.1054E-15 141 35 6 0.645381683139501 0.00679340698032016 0.0771149312334597 6.9374E-05 1 14491 108.71 91.427 3 55885000 44798 4828 50160 4823.5 26146 48138 22097 21592 7024.5 2048.4 42410 4560.8 49898 5648.9 27879 45989 22275 22748 7570.4 2428.5 1 1 1 1 1 1 1 1 1 1 4703 1350 4139 4412 5219 5219 2447 SPPKVPIVIQDDSLPAGPPPQIR 23 Phospho (STY) _S(ph)PPKVPIVIQDDSLPAGPPPQIR_ S(1)PPKVPIVIQDDSLPAGPPPQIR S(114.09)PPKVPIVIQDDS(-114.09)LPAGPPPQIR 0 0 1 1 Q7Z422 Q7Z422 Q7Z422 SZRD1 SUZ domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 987.552185058594 3 834.443635 2500.30908 32064.1463344761 1.7097 0.0014266 183090 152.78 183090 152.78 987.553054839368 88.437 0.80148 88.437 88.109 88.911 0 64 27 3 0.970598121902395 0.00419432236844278 0.101013676575545 5.7243E-18 1 20623 236.6 212.39 2 16566000 5049.5 8651.8 7923.6 8580.4 9160.8 7078.6 6854.6 8014.9 8700.8 42809 4788.9 8172.7 7824.1 8790.3 9192.5 7254.6 7138.7 9293.2 8506.8 40496 1 1 1 1 1 1 1 1 1 1 4704 1336 4140 4413 5220 5220 2411 SPPLPAVIR 9 Phospho (STY) _S(ph)PPLPAVIR_ S(1)PPLPAVIR S(83.31)PPLPAVIR 0 0 1 0 Q9Y6X9 Q9Y6X9 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.860534667969 2 515.278267 1028.54198 38742.9477236431 1.9967 0.0010289 222370 114.58 222370 114.58 629.859676720533 74.523 0.99102 74.523 74.07 75.061 1.4211E-14 99 33 4 0.834317584885693 0.00723789080167891 0.364855331222746 0.0096644 1 17458 83.309 55.091 1 141370000 15425 24565 15845 23968 22587 17944 20286 21492 25274 4747.2 14598 23202 16009 24549 22495 18308 20896 21564 24726 4967.4 1 1 1 1 1 1 1 1 1 1 4705 2320 4141 4414 5221 5221 4275 SPPLSPVGTTPVK 13 Phospho (STY) _SPPLSPVGTT(ph)PVK_ SPPLSPVGT(0.044)T(0.956)PVK S(-92.4)PPLS(-97.8)PVGT(-13.41)T(13.41)PVK 0 0 1 0 Q9BVC5 Q9BVC5 Q9BVC5 C2orf49 Ashwin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 607.01318359375 3 453.902171 1358.68468 40606.5032831007 1.7488 0.00079377 336580 152.78 336580 152.78 607.012088555503 67.014 0.66366 67.014 66.664 67.328 0 60 22 3 0.924243825613205 0.00320437286924895 0.0577687827261153 0.00010895 1 15724 123.63 93.421 4 12710000 8356.9 7129.8 9272.5 7665.4 5435.9 10071 5945.8 6815.5 8739.7 3061.5 7911.2 6738.4 9238.2 7876.5 5752.7 9952.5 6104.4 7054.9 8504.9 3040.5 1 1 1 1 1 1 1 1 1 1 4706 1840 4142 4415 5222 5222 4756 SPPMELQPPVSPQQSECNPVGALQELVVQK 30 Phospho (STY) _SPPMELQPPVS(ph)PQQSECNPVGALQELVVQK_ SPPMELQPPVS(0.989)PQQS(0.011)ECNPVGALQELVVQK S(-37.56)PPMELQPPVS(19.67)PQQS(-19.67)ECNPVGALQELVVQK 0 0 1 0 Q15633 Q15633 Q15633 TARBP2 RISC-loading complex subunit TARBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 957.243225097656 4 842.408196 3365.60368 32000.3163468159 0.83312 0.00070182 136020 114.58 136020 114.58 957.241193113256 101.43 0.25647 101.43 101.24 101.5 -1.4211E-14 31 8 6 0.931806934720809 0.0105556078900336 0.16595398539924 3.1866E-05 2 23832 124.91 102.98 3 67932000 15565 25043 15322 23382 20590 18814 25044 25916 25866 127680 14727 23648 15515 24036 20648 19391 25301 29568 25487 120820 2 2 2 2 2 2 2 2 2 2 4707 1081 4143 4416 5223;5224 5223 1875 SPPPETIK 8 Phospho (STY) _S(ph)PPPETIK_ S(1)PPPETIK S(37.1)PPPET(-37.1)IK 0 0 1 0 Q15652 Q15652 Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.888916015625 2 474.725533 947.436514 37986.1701197892 2.5054 0.0011894 482730 229.16 482730 229.16 703.888021419618 49.332 1.4473 49.332 48.594 50.041 0 141 49 4 0.746214788268675 0.00460816706562803 0.152987897898344 0.048998 1 11395 51.092 20.838 2 79958000 71571 42349 72091 35869 33220 70121 34232 45248 36076 7852.3 67727 39969 72088 37775 36023 68460 34847 46588 35518 8441.1 1 1 1 1 1 1 1 1 1 1 4708 1086 4144 4417 5225 5225 1885 SPPPGPACPLLQR 13 Phospho (STY) _S(ph)PPPGPACPLLQR_ S(1)PPPGPACPLLQR S(60.72)PPPGPACPLLQR 0 0 1 0 Q9BRR9 Q9BRR9 Q9BRR9 ARHGAP9 Rho GTPase-activating protein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.936706542969 2 735.352169 1468.68978 33312.9714346425 1.0838 0.000797 155820 114.58 155820 114.58 850.436540650349 65.674 0.50251 65.674 65.454 65.957 0 32 16 3 0.961845567310297 0.00061468098843791 0.0177010645058379 0.029748 1 15432 60.717 24.322 1 6768200 9620.5 6220.2 8323.1 5935.3 8659.5 9888.1 9523.2 8867 8823.3 23190 9098.6 5874.4 8461.3 6175.1 8779.4 9765.8 9633.1 9632.6 8735.6 22042 1 1 1 1 1 1 1 1 1 1 4709 1814 4145 4418 5226 5226 3329 SPPPGPDGHAK 11 Phospho (STY) _S(ph)PPPGPDGHAK_ S(1)PPPGPDGHAK S(146.77)PPPGPDGHAK 0 0 1 0 P57081 P57081 P57081 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.276550292969 3 380.500889 1138.48084 43219.2350260223 1.1967 0.00045536 401510 152.78 401510 152.78 533.276189877904 32.004 1.1436 32.004 31.413 32.557 0 96 38 4 0.861142379042117 0.00216800031000167 0.0516742476416504 6.6085E-07 2 7122 146.77 121.38 1 16812000 22636 20891 21554 21237 21596 22351 21647 22515 22476 6201.9 21416 19737 21766 21803 21915 22368 22055 22765 22142 6361 2 2 2 2 2 2 2 2 2 2 4710 733 4146 4419 5227;5228 5227 1217 SPPPMNLGMNNR 12 Oxidation (M),Phospho (STY) _S(ph)PPPMNLGM(ox)NNR_ SPPPM(0.001)NLGM(0.999)NNR S(1)PPPMNLGMNNR SPPPM(-29.19)NLGM(29.19)NNR S(62.78)PPPMNLGMNNR 0 1 1 0 Q06413 Q06413 Q06413 MEF2C Myocyte-specific enhancer factor 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 826.880126953125 2 712.296536 1422.57852 34300.4938357151 2.0131 0.0014339 160860 114.58 160860 114.58 826.877471814247 51.479 0.78467 51.479 51.021 51.806 0 63 26 3 0.984088649010789 0.00108994037524115 0.012214725128778 0.020495 1 11936 62.78 40.288 2 19272000 18188 15600 18326 16163 12904 18839 12955 16151 13671 11062 17211 14740 18379 16605 13416 18751 13204 16638 13459 10790 1 1 1 1 1 1 1 1 1 1 4711 877 4147 4420 5229 5229 120 1422 SPPPMNLGMNNR 12 Phospho (STY) _S(ph)PPPMNLGMNNR_ S(1)PPPMNLGMNNR S(59.04)PPPMNLGMNNR 0 0 1 0 Q06413 Q06413 Q06413 MEF2C Myocyte-specific enhancer factor 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.88134765625 2 704.299079 1406.58361 35298.1662081522 1.9679 0.001386 162690 114.58 162690 114.58 818.880197480969 61.95 1.1009 61.95 61.391 62.492 0 112 37 5 0.898824012234933 0.00275358879025052 0.0515629626639278 0.032429 1 14523 59.04 37.577 1 47887000 37259 22157 34337 21495 25186 33214 25410 27423 22350 12047 35246 20927 34632 22299 26099 32719 25771 28094 22182 11979 1 1 1 1 1 1 1 1 1 1 4712 877 4147 4421 5230 5230 1422 SPPPVSK 7 Phospho (STY) _S(ph)PPPVSK_ S(1)PPPVSK S(39.26)PPPVS(-39.26)K 0 0 1 0 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.352478027344 2 396.188587 790.36262 39805.4738957561 2.0232 0.00080159 578420 229.16 578420 229.16 625.351953389946 42.708 2.1395 42.708 41.826 43.965 7.1054E-15 159 73 4 0.864408635148219 0.00790292689350102 0.196334948331045 0.040528 1 9705 55.908 14.334 2 128670000 51757 54384 60527 50371 47922 53177 54059 50656 54098 5939.2 49009 51352 60301 52009 49462 53156 54734 51088 53377 6764.8 1 1 1 1 1 1 1 1 1 1 4713 832 4148 4422 5231 5231 1338 SPPREGSQGELTPANSQSR 19 Phospho (STY) _S(ph)PPREGSQGELTPANSQSR_ S(0.999)PPREGS(0.001)QGELTPANSQSR S(32.77)PPREGS(-32.77)QGELT(-70.18)PANS(-108.78)QS(-108.32)R 0 0 1 1 Q13098 Q13098 Q13098 GPS1 COP9 signalosome complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.036437988281 3 693.314801 2076.92257 36062.483926746 1.1151 0.00077309 110180 76.388 110180 76.388 770.036647783912 34.833 0.54124 34.833 34.55 35.092 0 32 18 2 0.718803745279907 0.0017111060520431 0.0278045699555391 2.1923E-05 2 7831 126.86 101.35 5 17489000 22043 25155 22954 25158 19608 20753 19569 22843 25985 7359.8 20862 23763 23020 25761 20101 21038 20097 23054 25367 7458.9 2 2 2 2 2 2 2 2 2 2 4714 922 4149 4423 5232;5233 5232 1520;4525 SPPSTGSTYGSSQKEESAASGGAAYTK 27 Phospho (STY) _S(ph)PPSTGSTYGSSQKEESAASGGAAYTK_ S(0.562)PPS(0.423)T(0.014)GSTYGSSQKEESAASGGAAYTK S(1.23)PPS(-1.23)T(-16.1)GS(-30.62)T(-44.79)Y(-65.92)GS(-105.93)S(-117.83)QKEES(-148.88)AAS(-173.94)GGAAY(-212.11)T(-209.77)K 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.667175292969 4 672.293355 2685.14431 33491.1314031143 2.3002 0.0015464 255650 171.87 255650 171.87 844.416070093566 51.334 0.72511 51.334 50.879 51.604 0 91 24 5 0.900389014136651 0.00200589509616007 0.0344067302177284 1.4944E-17 1 11895 217.83 194.54 12 28059000 6394.4 6382.7 6065.4 6557.7 9565.1 6654.4 8949.8 7528.2 7914.8 24368 6049.5 6030.5 6168.1 6724.1 9490.3 6722.6 9111.4 8251.7 7853.4 23119 1 1 1 1 1 1 1 1 1 1 4715 2257 4150 4424 5234 5234 4179 SPPYTAFLGNLPYDVTEESIK 21 Phospho (STY) _S(ph)PPYTAFLGNLPYDVTEESIK_ S(0.895)PPY(0.005)T(0.1)AFLGNLPYDVTEESIK S(9.53)PPY(-22.53)T(-9.53)AFLGNLPY(-105.7)DVT(-119.51)EES(-136.66)IK 0 0 1 0 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 960.824401855469 3 807.713568 2420.11887 31526.0019480051 1.3125 0.0010601 189150 152.78 189150 152.78 960.823436075014 101.77 0.22731 101.77 101.64 101.87 0 28 7 6 0.981344578288318 0.0286334130046227 0.552147786498396 6.854E-08 1 23951 154.67 132.02 6 211040000 32762 75100 39501 69859 29188 43904 37950 63834 85586 134150 31026 70914 39278 71632 30398 45668 39514 67300 82427 127790 1 1 1 1 1 1 1 1 1 1 4716 468 4151 4425 5235 5235 768 SPQEEDFRCPSDEDFR 16 Phospho (STY) _SPQEEDFRCPS(ph)DEDFR_ SPQEEDFRCPS(1)DEDFR S(-93.65)PQEEDFRCPS(93.65)DEDFR 0 0 1 1 Q8IXT5 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.323547363281 3 698.601731 2092.78336 37293.3809740117 1.2862 0.00089857 109340 76.387 109340 76.388 775.322303908321 55.433 0.64155 55.433 55.191 55.833 0 51 21 3 0.94808403926736 0.00135685499876236 0.0161990479891722 5.3258E-07 1 12951 142.99 113.51 2 9158700 10778 13187 11072 13555 14269 12113 13145 14706 12219 41294 10200 12459 11169 13872 14275 12316 13409 15895 12095 39223 1 1 1 1 1 1 1 1 1 1 4717 1429 4152 4426 5236 5236 2602 SPQFINLK 8 Phospho (STY) _S(ph)PQFINLK_ S(1)PQFINLK S(120.77)PQFINLK 0 0 1 0 Q92576 Q92576 Q92576 PHF3 PHD finger protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 495.614288330078 3 342.838842 1025.4947 45476.3145637769 0.48668 0.00016685 445620 152.78 445620 152.78 495.613987617907 80.089 0.44097 80.089 79.872 80.313 0 35 14 3 0.914806537247743 0.00148835489297196 0.0144338676756331 0.0004635 1 18759 120.77 68.19 1 8315600 8137 7477 6551.3 5986.1 5695.2 8036.7 5656.4 5716.9 6688.5 1626.8 7693.8 7054.7 6677.4 6270.3 5830.5 7938.1 5787.9 5873.3 6555.8 1664.1 1 1 1 1 1 1 1 1 1 1 4718 1602 4153 4427 5237 5237 2945 SPQLSDFGLER 11 Phospho (STY) _S(ph)PQLSDFGLER_ S(1)PQLSDFGLER S(56.51)PQLS(-56.51)DFGLER 0 0 1 0 Q8IX90 Q8IX90 Q8IX90 SKA3 Spindle and kinetochore-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.380249023438 2 664.797749 1327.58095 34895.0824846109 1.7934 0.0011923 172360 114.58 172360 114.58 779.379224444374 77.633 1.0087 77.633 77.168 78.176 0 93 34 4 0.993344990327037 0.00402617261646335 0.199282806934549 5.4584E-08 1 18171 174.59 103.91 2 45741000 16642 21904 15515 22095 8860.7 15969 9283.6 17552 24240 19221 15744 20693 15607 22577 9404.9 16336 9839.2 18124 23284 18505 1 1 1 1 1 1 1 1 1 1 4719 1424 4154 4428 5238 5238 2594 SPQLSLSPRPASPK 14 Phospho (STY) _SPQLSLSPRPAS(ph)PK_ S(0.006)PQLS(0.003)LS(0.008)PRPAS(0.984)PK S(-22.01)PQLS(-25.68)LS(-21.16)PRPAS(21.16)PK 0 0 1 1 O95785 O95785 O95785 WIZ Protein Wiz MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.375854492188 3 515.599262 1543.77596 39567.1205516708 2.127 0.0010967 296300 152.77 296310 152.78 668.373881976594 58.304 0.49814 58.304 58.111 58.609 0 42 16 3 0.747617610350514 0.00220050313069635 0.0335440501614156 0.033083 1 13658 50.884 15.239 4 20484000 12789 11998 13003 12479 14144 13120 16212 15445 12262 6997.4 12102 11337 13099 12794 14312 13165 16295 15613 12267 6946.3 1 1 1 1 1 1 1 1 1 1 4720 261 4155 4429 5239 5239 435 SPQPLGGSHR 10 Phospho (STY) _S(ph)PQPLGGSHR_ S(1)PQPLGGSHR S(41.81)PQPLGGS(-41.81)HR 0 0 1 0 O43561 O43561 O43561 LAT Linker for activation of T-cells family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 448.892669677734 3 372.504634 1114.49207 47671.665871203 0.98548 0.0003671 205060 76.388 205070 76.388 448.892090059564 28.689 0.52163 28.689 28.435 28.957 0 39 17 3 0.462379953497081 0.00268534019239183 0.0257474761528235 0.028576 1 6378 51.135 30.898 2 12842000 16124 13504 16172 13892 18958 15047 19452 17290 14174 2706.2 15258 12759 16317 14258 19076 15064 19632 17338 14209 2948.3 1 1 1 1 1 1 1 1 1 1 4721 117 4156 4430 5240 5240 204 SPQPVCSPAGSEGTPK 16 Phospho (STY) _SPQPVCS(ph)PAGSEGTPK_ S(0.001)PQPVCS(0.991)PAGS(0.007)EGTPK S(-28.31)PQPVCS(21.28)PAGS(-21.28)EGT(-46.06)PK 0 0 1 0 Q6KC79 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.353149414063 3 560.242927 1677.70695 36472.2174656926 1.6796 0.000941 272690 152.77 272690 152.78 713.352886657343 43.444 0.48868 43.444 43.121 43.609 0 34 16 3 0.783897466718226 0.00142459682755224 0.00646792572350866 0.0011645 1 9929 98.507 66.868 4 37498000 18672 17172 17995 14968 14584 18929 14505 16556 16723 6511.1 17666 16209 18117 15567 15002 18779 14829 16895 16407 6514.2 1 1 1 1 1 1 1 1 1 1 4722 1244 4157 4431 5241 5241 2204 SPQQSAALPR 10 Phospho (STY) _S(ph)PQQSAALPR_ S(0.999)PQQS(0.001)AALPR S(29.77)PQQS(-29.77)AALPR 0 0 1 0 Q6IBW4 Q6IBW4 Q6IBW4 NCAPH2 Condensin-2 complex subunit H2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.35205078125 2 567.768795 1133.52304 37065.0072211579 1.2844 0.00072925 201810 114.58 201810 114.58 682.350610472048 39.621 0.4675 39.621 39.393 39.861 0 29 15 2 0.658988226092951 0.00168602200451413 0.0437479489431878 0.010645 1 9006 81.335 59.292 2 16640000 15110 11989 15093 11161 14538 15099 15694 14356 12532 3680.2 14298 11321 15194 11574 14799 14956 15833 14540 12500 3797.6 1 1 1 1 1 1 1 1 1 1 4723 1239 4158 4432 5242 5242 2183 SPQQTVPYVVPLSPK 15 Phospho (STY) _SPQQTVPYVVPLS(ph)PK_ SPQQTVPYVVPLS(1)PK S(-90.85)PQQT(-82.85)VPY(-58.59)VVPLS(58.59)PK 0 0 1 0 Q9UQR0 Q9UQR0 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.739501953125 3 573.962089 1718.86444 36713.0177479394 1.8686 0.0010725 266180 152.78 266180 152.78 727.071906282504 82.98 0.57818 82.98 82.655 83.233 -1.4211E-14 66 19 4 0.911498445979822 0.00504053518466092 0.0240498860996585 8.2934E-05 1 19386 120.23 109.62 4 30632000 5974.2 9813.4 6348 7852.1 4981 5755.4 5047.4 7366.9 10669 6214.3 5654.6 9259.2 6354 8148.3 5141.7 5894.4 5288.6 7514.4 10289 6022 1 1 1 1 1 1 1 1 1 1 4724 2233 4159 4433 5243 5243 4126;4127 SPQQTVPYVVPLSPK 15 Phospho (STY) _S(ph)PQQTVPYVVPLSPK_ S(0.843)PQQT(0.157)VPYVVPLSPK S(7.31)PQQT(-7.31)VPY(-51.58)VVPLS(-87.18)PK 0 0 1 0 Q9UQR0 Q9UQR0 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.737243652344 3 573.962089 1718.86444 36977.3810086603 1.9396 0.0011133 266180 152.78 266180 152.78 727.072032578255 86.975 0.35282 86.975 86.818 87.171 0 32 11 3 0.972935302723624 0.00207848862089692 0.0264751374344144 0.00016575 1 20308 101.62 90.678 4 11268000 6753.9 7512.3 6339.7 7257.7 4860.4 6751.3 5425.3 5453.5 7458.6 10127 6389.4 7095.1 6390.5 7459.4 5029.6 6792.6 5551 5825.7 7273.1 9662 1 1 1 1 1 1 1 1 1 1 4725 2233 4159 4433 5244 5244 4126;4127 SPQQTVPYVVPLSPK 15 2 Phospho (STY) _S(ph)PQQTVPYVVPLS(ph)PK_ S(0.516)PQQT(0.483)VPY(0.001)VVPLS(1)PK S(0.28)PQQT(-0.28)VPY(-29.01)VVPLS(33.94)PK 0 0 2 0 Q9UQR0 Q9UQR0 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.397705078125 3 600.617533 1798.83077 35865.5653419952 1.6971 0.0010193 254360 152.78 254370 152.78 753.393737476022 88.347 1.0867 88.347 88.055 89.141 0 93 37 4 0.969660466335544 0.00321660600490286 0.0558186421583682 0.01247 1 20596 77.241 61.986 6 14263000 5551.7 7133.8 5509 6920.9 5065.5 6525.2 4480.3 7286.9 7282.7 16144 5253.1 6737.8 5543.2 7112.8 5161.1 6598.1 4665.4 7766.2 7067 15370 1 1 1 1 1 1 1 1 1 1 4726 2233 4159 4434 5245 5245 4126;4127 SPQVPAAQQMLNFPEK 16 Phospho (STY) _S(ph)PQVPAAQQMLNFPEK_ S(1)PQVPAAQQMLNFPEK S(175.23)PQVPAAQQMLNFPEK 0 0 1 0 Q92922 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.068725585938 3 622.293622 1863.85904 35473.3372770863 1.6782 0.0010443 245500 152.78 245510 152.78 775.40343289475 89.199 0.86819 89.199 88.708 89.576 0 98 29 5 0.990029682774484 0.00385843083537673 0.0484268682272947 1.3044E-08 1 20757 175.23 150.93 1 27753000 7721.7 12401 7597 10233 6876.2 8516 6232.7 9481.9 12231 21378 7306.3 11702 7646.9 10612 7017.1 8665 6539.5 10118 11814 20349 1 1 1 1 1 1 1 1 1 1 4727 1631 4160 4435 5246 5246 3016 SPRPASPASNVVVLPSGSTVYVK 23 Phospho (STY) _SPRPAS(ph)PASNVVVLPSGSTVYVK_ S(0.213)PRPAS(0.784)PAS(0.002)NVVVLPSGSTVYVK S(-5.66)PRPAS(5.66)PAS(-25.24)NVVVLPS(-72.06)GS(-82.52)T(-87.56)VY(-107.26)VK 0 0 1 1 Q7Z589 Q7Z589 Q7Z589 EMSY Protein EMSY MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 950.857788085938 3 798.080585 2391.21993 32515.5888242525 1.8432 0.0014711 191430 152.78 191430 152.78 951.190464620418 76.948 0.40189 76.948 76.766 77.168 0 53 13 5 0.946804675562552 0.00355952011227136 0.0248417477732794 7.5253E-08 1 18036 138.88 119.51 7 25668000 6325.7 4618.4 5978.2 5004.8 10946 7157.5 10797 8245.1 5719.1 20672 5984.4 4365 6100.2 5149.7 10808 7130.8 10859 8851.2 5858.4 19656 1 1 1 1 1 1 1 1 1 1 4728 1345 4161 4436 5247 5247 2426 SPRPDHPGTPPHK 13 2 Phospho (STY) _S(ph)PRPDHPGT(ph)PPHK_ S(1)PRPDHPGT(1)PPHK S(123.19)PRPDHPGT(123.19)PPHK 0 0 2 1 P30291 P30291 P30291 WEE1 Wee1-like protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 511.000946044922 4 396.419541 1581.64906 43935.0260936156 1.0182 0.00040363 289040 114.58 289040 114.58 511.001020275544 29.282 0.8827 29.282 28.866 29.749 0 85 29 4 0.724384729733944 0.00268682716535993 0.0374844903800167 7.3733E-05 1 6493 123.19 99.771 1 30172000 10312 10355 10377 12052 8333.9 11105 8891.3 10323 12931 3101.4 9758.5 9791.9 10422 12256 8589.6 11169 9134.4 10479 12588 3159.2 1 1 1 1 1 1 1 1 1 1 4729 514 4162 4437 5248 5248 839;4441 SPRPTGSDLLPGAPILSLR 19 Phospho (STY) _S(ph)PRPTGSDLLPGAPILSLR_ S(0.993)PRPT(0.003)GS(0.003)DLLPGAPILSLR S(24.54)PRPT(-24.54)GS(-24.54)DLLPGAPILS(-88.07)LR 0 0 1 1 Q8N1F8 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.751159667969 3 676.361023 2026.06124 38168.089669733 1.611 0.0010896 112940 76.388 112940 76.389 753.082002645477 94.6 0.79655 94.6 94.284 95.081 0 60 27 4 0.97548226415441 0.00212692648491992 0.0513163983773284 0.00030841 1 22013 100.7 73.2 4 10058000 4564.4 3627.8 4102.2 4108.7 2705.9 4388.3 3228 4586.7 3939.7 28586 4317.4 3429.8 4141.1 4193.9 2836.5 4442.4 3280.3 5454.5 3857.1 27023 1 1 1 1 1 1 1 1 1 1 4730 1454 4163 4438 5249 5249 2693 SPRPTSAPAITQGQVAEGGVLDASAK 26 Phospho (STY) _SPRPT(ph)SAPAITQGQVAEGGVLDASAK_ S(0.082)PRPT(0.456)S(0.456)APAIT(0.006)QGQVAEGGVLDASAK S(-7.47)PRPT(0)S(0)APAIT(-19.03)QGQVAEGGVLDAS(-187.33)AK 0 0 1 1 P11171 P11171 P11171 EPB41 Protein 4.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.404052734375 4 647.823354 2587.26431 35506.2559512022 1.8256 0.0011827 176870 114.58 176870 114.58 762.654669439541 67.892 0.50888 67.892 67.615 68.124 0 43 16 4 0.864794498048248 0.00124481259702635 0.0159079676278458 4.4809E-12 1 15934 193.49 174.45 5 11220000 5587.4 6068.4 5235 6151.7 7744.8 5613.9 7917.5 6230.3 5796.5 9244.9 5285.7 5733.1 5322.7 6302.7 7711.7 5676.2 7992.9 6504.1 5809.3 8849.4 1 1 1 1 1 1 1 1 1 1 4731 360 4164 4439 5250 5250 585;586;4389 SPRSPQLSDFGLER 14 Phospho (STY) _SPRS(ph)PQLSDFGLER_ S(0.005)PRS(0.995)PQLSDFGLER S(-23.24)PRS(23.24)PQLS(-68.93)DFGLER 0 0 1 1 Q8IX90 Q8IX90 Q8IX90 SKA3 Spindle and kinetochore-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.31884765625 3 556.92956 1667.76685 39619.0295330345 1.7461 0.00097245 137160 76.388 137160 76.389 633.317218119665 67.905 0.77379 67.905 67.615 68.388 0 68 25 3 0.90760043986667 0.00656606341159536 0.0690907383457603 6.6814E-07 1 15916 147.49 124.61 3 61787000 10246 14421 11812 15440 10337 11563 10405 10409 16263 4996.2 9701.1 13629 11786 15729 10584 11758 10749 10636 15799 4945.5 1 1 1 1 1 1 1 1 1 1 4732 1424 4165 4440 5251 5251 2594 SPSAGDVHILTGFAK 15 Phospho (STY) _S(ph)PSAGDVHILTGFAK_ S(0.5)PS(0.5)AGDVHILTGFAK S(0)PS(0)AGDVHILT(-73.82)GFAK 0 0 1 0 Q9Y2H2 Q9Y2H2 Q9Y2H2 INPP5F Phosphatidylinositide phosphatase SAC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.367980957031 3 527.255384 1578.74432 38464.6738685183 1.7641 0.00093012 289760 152.78 289760 152.78 680.364514573724 82.77 0.54217 82.77 82.486 83.028 0 44 18 3 0.970589761045125 0.00234578244851173 0.0142169016731182 6.3575E-06 1 19366 137.44 118.62 3 6485800 6371.8 6072.9 6692.2 6163.9 5804.3 6021.2 5272.2 5841.3 5522.3 7057 6030.5 5737.4 6708.3 6321 5935.3 6052.8 5399.1 6078.9 5438.3 6780.2 1 1 1 1 1 1 1 1 1 1 4733 2245 4166 4441 5252 5252 4145;4146 SPSAIPEQNHSLNDQAK 17 Phospho (STY) _S(ph)PSAIPEQNHSLNDQAK_ S(0.996)PS(0.004)AIPEQNHSLNDQAK S(23.81)PS(-23.81)AIPEQNHS(-130.86)LNDQAK 0 0 1 0 Q13129 Q13129 Q13129 RLF Zinc finger protein Rlf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.401611328125 3 639.289705 1914.84728 35090.5895416565 1.728 0.0011047 238980 152.78 238980 152.78 792.399176529266 47.001 0.37862 47.001 46.799 47.178 0 50 12 5 0.987952037350179 0.00532388966004339 0.0244348170055657 1.0384E-22 1 10847 259.16 235.72 3 44842000 22070 30359 20703 31530 23850 22171 25520 25516 34800 23191 20879 28685 20967 32152 24050 22727 26151 26164 33944 22427 1 1 1 1 1 1 1 1 1 1 4734 926 4167 4442 5253 5253 1526 SPSASSLSSMSSVASSVSSRPSR 23 Phospho (STY) _SPS(ph)ASSLSSMSSVASSVSSRPSR_ S(0.017)PS(0.795)AS(0.169)S(0.018)LS(0.001)SMSSVASSVSSRPSR S(-16.62)PS(6.73)AS(-6.73)S(-16.45)LS(-31.55)S(-37.29)MS(-65.62)S(-74.02)VAS(-81.13)S(-83.91)VS(-83.91)S(-83.91)RPS(-84.11)R 0 0 1 1 P30622 P30622 P30622 CLIP1 CAP-Gly domain-containing linker protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 851.07275390625 3 774.352816 2320.03662 33458.0699615191 0.7538 0.00058371 98645 76.386 98646 76.387 851.072274668748 65.807 0.35334 65.807 65.573 65.926 0 29 11 3 0.950546939979398 0.00136124141141609 0.0203868154736349 0.00081423 1 15457 99.396 88.492 13 10562000 7275.8 8289.8 7562.9 7953.8 6254.7 8258 6453.1 9845.9 8253.8 13018 6885.9 7829.2 7583.3 8192.1 6429 8308.3 6608.4 10207 8067.7 12486 1 1 1 1 1 1 1 1 1 1 4735 518 4168 4443 5254 5254 847 SPSDLLDASAVSATSR 16 Phospho (STY) _S(ph)PSDLLDASAVSATSR_ S(0.5)PS(0.5)DLLDASAVSATSR S(0)PS(0)DLLDAS(-71.53)AVS(-87.9)AT(-92.06)S(-92.08)R 0 0 1 0 O60499 O60499 O60499 STX10 Syntaxin-10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.642578125 3 552.92073 1655.74036 40383.0902643999 1.6331 0.00090296 138150 76.387 138150 76.388 629.642709279474 78.438 0.80352 78.438 78.092 78.895 0 47 27 3 0.848646811424291 0.00117968826495862 0.0209198941744853 0.0032017 1 18408 92.897 79.469 6 7379500 3352.7 4868.3 3710.3 5914.4 4349.3 3949.4 3959.5 5629 5902.8 4576.3 3173.9 4604.9 3722.6 5977.3 4372.3 4076 4102.4 5719.1 5741.9 4439.4 1 1 1 1 1 1 1 1 1 1 4736 147 4169 4444 5255 5255 251;252 SPSEISVHVGIDDTSRNSPK 20 2 Phospho (STY) _SPS(ph)EISVHVGIDDTSRNS(ph)PK_ S(0.044)PS(0.951)EIS(0.005)VHVGIDDT(0.266)S(0.203)RNS(0.531)PK S(-14.36)PS(14.36)EIS(-22.61)VHVGIDDT(-3.08)S(-4.26)RNS(3.08)PK 0 0 2 1 Q04656 Q04656 Q04656 ATP7A Copper-transporting ATPase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.835632324219 4 572.001623 2283.97739 37917.5965442966 1.6117 0.00092192 200320 114.58 200320 114.58 686.833845437213 65.23 0.60416 65.23 64.879 65.483 0 50 20 3 0.915442113186557 0.00139634629358682 0.0387230051804528 7.8031E-08 1 15337 159.89 135.29 15 9433100 3216.5 2892.4 2530.3 2661.3 2375.6 2933.3 3234.5 3090.9 2965.1 17374 3041.1 2731 2587.1 2751 2431.8 2962.7 3243.8 3617.8 2937.1 16431 1 1 1 1 1 1 1 1 1 1 4737 862 4170 4445 5256 5256 1398;1399 SPSELFAQHIVTIVHHVK 18 Phospho (STY) _S(ph)PSELFAQHIVTIVHHVK_ S(0.955)PS(0.045)ELFAQHIVTIVHHVK S(13.28)PS(-13.28)ELFAQHIVT(-148.92)IVHHVK 0 0 1 0 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.857482910156 4 531.276583 2121.07722 38574.9550361465 1.8744 0.00099581 215670 114.58 215670 114.58 645.85708620256 96.724 1.0984 96.724 96.173 97.272 0 119 37 4 0.758490375019049 0.00231327648463332 0.0290001171909158 3.4544E-12 1 22445 211.75 176.44 3 16133000 2807.1 2432.2 2476.5 2308.4 2078.6 2252.8 1944 2220.5 2610.4 3233.5 2655 2296.9 2507.6 2376.9 2131.6 2266.3 2003.6 2326 2547.4 3096.1 1 1 1 1 1 1 1 1 1 1 4738 2257 4171 4446 5257 5257 4180 SPSFASEWDEIEK 13 Phospho (STY) _SPS(ph)FASEWDEIEK_ S(0.115)PS(0.871)FAS(0.014)EWDEIEK S(-8.78)PS(8.78)FAS(-18.06)EWDEIEK 0 0 1 0 Q92625 Q92625 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1031.99304199219 2 802.829444 1603.64433 31787.9735916289 1.7949 0.001441 285440 229.16 285450 229.16 1031.99217095298 93.412 0.64198 93.412 93.12 93.762 1.4211E-14 58 21 4 0.808039037716281 0.00160483160744213 0.0676571288885596 6.7996E-17 1 21753 248.76 212.92 3 17443000 20400 18571 18726 14203 14253 21534 13820 22184 18796 41718 19297 17519 18897 14968 14727 21344 14225 23484 18335 39796 1 1 1 1 1 1 1 1 1 1 4739 1613 4172 4447 5258 5258 2977 SPSFGGASEASAR 13 Phospho (STY) _S(ph)PSFGGASEASAR_ S(0.5)PS(0.5)FGGASEASAR S(0.01)PS(-0.01)FGGAS(-50.57)EAS(-116.02)AR 0 0 1 0 Q8WVT3 Q8WVT3 Q8WVT3 TRAPPC12 Trafficking protein particle complex subunit 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.851440429688 2 652.269356 1302.52416 35772.0063948673 2.1131 0.0013783 175670 114.58 175670 114.58 766.850323669121 44.777 0.61277 44.777 44.51 45.122 7.1054E-15 72 20 5 0.868036101443954 0.00752861648598524 0.14489659857858 9.8796E-16 1 10282 222.56 188.69 4 97387000 61355 72650 62876 68812 42240 70253 48674 61694 79611 8762.5 58063 68609 62984 70911 44204 70263 50084 62480 77240 9678.8 1 1 1 1 1 1 1 1 1 1 4740 1573 4173 4448 5259 5259 2885 SPSGSAFGSQENLR 14 Phospho (STY) _SPSGSAFGS(ph)QENLR_ S(0.001)PS(0.004)GS(0.202)AFGS(0.793)QENLR S(-28.59)PS(-23.32)GS(-5.93)AFGS(5.93)QENLR 0 0 1 0 Q96N67 Q96N67 Q96N67 DOCK7 Dedicator of cytokinesis protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.911376953125 2 758.825027 1515.6355 32450.2040109544 1.1852 0.00089939 151000 114.58 151000 114.59 873.910663789405 50.893 0.37556 50.893 50.675 51.051 0 20 12 2 0.895416890040245 0.000301820171567986 0.00366879607227457 0.040525 1 11846 56.937 41.347 4 9058900 10392 12385 11485 11385 13426 11268 12567 12472 13613 12351 9837.7 11694 11524 11749 13499 11338 12862 12836 13388 11918 1 1 1 1 1 1 1 1 1 1 4741 1720 4174 4449 5260 5260 3166;3167 SPSGSAFGSQENLR 14 Phospho (STY) _SPSGS(ph)AFGSQENLR_ S(0.012)PS(0.203)GS(0.779)AFGS(0.006)QENLR S(-18.2)PS(-5.84)GS(5.84)AFGS(-20.81)QENLR 0 0 1 0 Q96N67 Q96N67 Q96N67 DOCK7 Dedicator of cytokinesis protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.908203125 2 758.825027 1515.6355 33956.9083659101 0.63793 0.00048408 151000 114.58 151000 114.58 873.406810775273 51.846 0.40829 51.846 51.633 52.041 0 32 13 3 0.954089032269958 0.00122719460144585 0.00707179920494196 0.00013938 1 12055 122.2 108.92 4 38919000 15393 18452 14873 19726 23604 17803 20913 17385 22340 12880 14564 17438 15108 20146 23401 17950 21456 17842 21982 12530 1 1 1 1 1 1 1 1 1 1 4742 1720 4174 4449 5261 5261 3166;3167 SPSKPLPEVTDEYK 14 Phospho (STY) _S(ph)PSKPLPEVTDEYK_ S(0.984)PS(0.016)KPLPEVTDEYK S(17.97)PS(-17.97)KPLPEVT(-77.1)DEY(-116.58)K 0 0 1 1 P05455 P05455 P05455 SSB Lupus La protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.760437011719 3 557.262204 1668.76478 35596.4566334009 2.0629 0.0011496 411230 229.16 411230 229.17 786.428093921669 67.824 0.47935 67.824 67.587 68.066 -1.4211E-14 48 15 4 0.947473289211351 0.00405464293985625 0.0392354289782667 8.7216E-08 1 15912 172.3 134 4 26283000 10019 31900 11021 34102 13116 11627 13675 22354 37472 13859 9484.2 30147 11067 34519 13217 12818 14545 22425 35965 13567 1 1 1 1 1 1 1 1 1 1 4743 305 4175 4450 5262 5262 502 SPSKPLPEVTDEYKNDVK 18 Phospho (STY) _S(ph)PSKPLPEVTDEYKNDVK_ S(0.983)PS(0.017)KPLPEVTDEYKNDVK S(17.54)PS(-17.54)KPLPEVT(-58.29)DEY(-110.85)KNDVK 0 0 1 2 P05455 P05455 P05455 SSB Lupus La protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1015.22430419922 3 709.339953 2124.99803 32045.9081929356 1.2665 0.00089839 430750 305.55 430750 305.55 1015.22424934831 68.815 0.44908 68.815 68.584 69.033 0 37 14 4 0.96580515929757 0.00085912151546754 0.010212131174862 3.7847E-07 1 16164 141.53 119.16 4 14596000 5975.8 19245 5319.6 19625 7325.3 7314 7000.3 11123 20394 10763 5652.2 18182 5418.2 19929 7323.3 7948.7 7508.1 11334 19555 10393 1 1 1 1 1 1 1 1 1 1 4744 305 4176 4451 5263 5263 502 SPSLLQSGAK 10 Phospho (STY) _SPS(ph)LLQSGAK_ S(0.004)PS(0.996)LLQSGAK S(-24.38)PS(24.38)LLQS(-33.73)GAK 0 0 1 0 Q9BQG0 Q9BQG0 Q9BQG0 MYBBP1A Myb-binding protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.424499511719 2 534.260272 1066.50599 36208.6893488424 1.6315 0.00087165 428940 229.16 428940 229.16 763.423827734302 60.553 0.6393 60.553 60.223 60.863 0 60 21 4 0.943227852733901 0.00428022477721679 0.273122767950037 2.2943E-06 1 14185 154.74 108.77 3 50278000 47595 31406 49440 28885 35132 49385 39774 38563 29891 13073 45044 29654 49511 30141 36553 48475 39993 39495 29913 13203 1 1 1 1 1 1 1 1 1 1 4745 1807 4177 4452 5264 5264 3315;3316 SPSLNLLQNK 10 Phospho (STY) _S(ph)PSLNLLQNK_ S(0.5)PS(0.5)LNLLQNK S(0)PS(0)LNLLQNK 0 0 1 0 O43353 O43353 O43353 RIPK2 Receptor-interacting serine/threonine-protein kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.311340332031 3 398.535711 1192.5853 42355.6311497748 1.619 0.00064521 383340 152.78 383340 152.78 551.311071301044 78.564 0.68918 78.564 78.176 78.865 1.4211E-14 75 23 4 0.983916904304912 0.0036749653690053 0.0954118589266642 0.00020757 1 18375 109.96 74.544 2 26764000 7622.8 6799 6879.3 6542.6 4419.5 7946.2 4599.4 5353.8 6985.2 2277.2 7210.3 6421.3 6940 6756 4635 7874 4738.5 5539.4 6791.1 2268.1 1 1 1 1 1 1 1 1 1 1 4746 107 4178 4453 5265 5265 178;179 SPSLSPSPPSPLEK 14 Phospho (STY) _SPSLSPSPPS(ph)PLEK_ SPSLSPSPPS(1)PLEK S(-77.84)PS(-77.84)LS(-62.68)PS(-34.79)PPS(34.79)PLEK 0 0 1 0 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.35400390625 3 501.576123 1501.70654 38900.4003891933 2.7108 0.0013597 304590 152.78 304590 152.78 654.352071004392 68.243 0.63918 68.243 67.916 68.555 0 45 21 3 0.969922214186182 0.00151711344517456 0.0511459955018591 0.00018102 1 16010 102.69 43.858 5 7878400 5053.5 9600.8 5032.3 8837.3 4756.5 5564.6 5741.5 6992.8 9573.3 4725.3 4781.8 9065.2 5066.9 9067.9 4860.7 5750.6 5902 7101.3 9283.4 4611.3 1 1 1 1 1 1 1 1 1 1 4747 616 4179 4454 5266 5266 1016 SPSLSSK 7 Phospho (STY) _S(ph)PSLSSK_ S(0.994)PS(0.006)LSSK S(21.85)PS(-21.85)LS(-69.16)S(-78.31)K 0 0 1 0 Q8IYB3;Q9UPU5 Q8IYB3;Q9UPU5 Q8IYB3 SRRM1;USP24 Serine/arginine repetitive matrix protein 1;Ubiquitin carboxyl-terminal hydrolase 24 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.339233398438 2 393.175676 784.3368 39634.1231937259 1.7215 0.00067686 582850 229.16 582850 229.16 622.338712899176 43.102 0.89599 43.102 42.626 43.522 0 112 30 5 0.884022163886816 0.00329251649105471 0.0449167739568179 0.0020943 1 9799 105.94 44.353 4 414270000 42255 46365 43247 48896 49294 41648 56497 47109 49839 4864.9 39988 43814 43578 49934 49763 42147 56981 47189 49458 5671.2 1 1 1 1 1 1 1 1 1 1 4748 1436;2220 4180 4455 5267 5267 2649;2650;4018 SPSMPENLNRPR 12 Phospho (STY) _S(ph)PSMPENLNRPR_ S(0.605)PS(0.395)MPENLNRPR S(1.85)PS(-1.85)MPENLNRPR 0 0 1 1 P30307 P30307 P30307 CDC25C M-phase inducer phosphatase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 569.613464355469 3 493.225431 1476.65446 41871.8894707024 1.4741 0.00072709 154870 76.388 154880 76.389 569.613190264668 43.863 0.44279 43.863 43.668 44.111 0 25 14 2 0.995517826197845 0.00385054207266058 0.0766419873206501 0.00011643 1 10065 109.83 78.865 2 31023000 12543 18008 15865 18345 12983 14906 11157 14557 18429 2947.8 11881 17014 15746 18760 13326 15096 11644 14704 17875 3112.6 1 1 1 1 1 1 1 1 1 1 4749 515 4181 4456 5268 5268 840 SPSPAHLPDDPK 12 Phospho (STY) _S(ph)PSPAHLPDDPK_ S(0.5)PS(0.5)PAHLPDDPK S(0)PS(0)PAHLPDDPK 0 0 1 0 Q92615 Q92615 Q92615 LARP4B La-related protein 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 600.644470214844 3 447.534258 1339.58095 40396.3938133196 1.2935 0.00057888 341370 152.78 341370 152.78 600.311181456014 50.033 0.7656 50.033 49.628 50.394 0 72 25 5 0.94436939661937 0.00664202750219937 0.0769326083472612 0.0070259 1 11597 80.387 43.617 2 95897000 23152 26959 22419 28208 15901 28363 19723 28596 31784 3293.5 21905 25474 22544 28889 16586 28432 20223 28774 30850 3763 1 1 1 1 1 1 1 1 1 1 4750 1609 4182 4457 5269 5269 2965;2966 SPSPAHLPDDPKVAEK 16 Phospho (STY) _S(ph)PSPAHLPDDPKVAEK_ S(0.5)PS(0.5)PAHLPDDPKVAEK S(0)PS(0)PAHLPDDPKVAEK 0 0 1 1 Q92615 Q92615 Q92615 LARP4B La-related protein 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.836730957031 4 442.713284 1766.82403 40229.0034543425 1.2564 0.00055623 388220 171.87 388230 171.87 614.584997253398 55.356 0.69808 55.356 54.896 55.594 0 61 23 4 0.973800670823498 0.00212599093840329 0.0379657124804487 0.0006787 1 12940 100.21 74.061 2 18464000 10206 11914 9130.8 10813 8121.1 9829.5 10406 11574 10650 3507.5 9653.5 11248 9248 11154 8333.5 9925 10489 11648 10498 3570.6 1 1 1 1 1 1 1 1 1 1 4751 1609 4183 4458 5270 5270 2965;2966 SPSPAVPLR 9 Phospho (STY) _S(ph)PSPAVPLR_ S(0.904)PS(0.096)PAVPLR S(9.76)PS(-9.76)PAVPLR 0 0 1 0 Q6P4R8 Q6P4R8 Q6P4R8 NFRKB Nuclear factor related to kappa-B-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.834777832031 2 502.25225 1002.48995 39457.2279909018 1.9178 0.00096323 228140 114.58 228140 114.58 616.83352834949 51.18 0.57947 51.18 50.852 51.431 0 47 19 3 0.596798101717689 0.00116084469801805 0.0104959324554919 0.00039651 1 11873 117.31 83.308 2 19508000 14357 12427 15738 13935 14488 14772 16639 14078 12308 5212.4 13591 11748 15757 14230 14803 14770 16715 14305 12328 5233.9 1 1 1 1 1 1 1 1 1 1 4752 1261 4184 4459 5271 5271 2237 SPSPGGPQLSPQLPR 15 Phospho (STY) _SPSPGGPQLS(ph)PQLPR_ SPSPGGPQLS(1)PQLPR S(-81.32)PS(-81.32)PGGPQLS(81.32)PQLPR 0 0 1 0 Q9HCH0 Q9HCH0 Q9HCH0 NCKAP5L Nck-associated protein 5-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.984497070313 3 533.26265 1596.76612 39959.4306282132 1.4698 0.00078378 143250 76.388 143250 76.388 609.984835024415 61.438 0.55557 61.438 61.155 61.71 7.1054E-15 36 18 3 0.955031068833675 0.000360663143840302 0.00769797237591313 0.00011765 1 14428 112.43 89.544 3 10474000 5792.9 5843.4 5356.5 6111.3 5191.1 5133.6 5448.7 5512.1 6268 2941.9 5479.9 5521.6 5417.2 6242.8 5282.1 5199.6 5556.4 5603 6149.9 2897.7 1 1 1 1 1 1 1 1 1 1 4753 1987 4185 4460 5272 5272 3609 SPSPGLFR 8 Phospho (STY) _S(ph)PSPGLFR_ S(0.98)PS(0.02)PGLFR S(16.99)PS(-16.99)PGLFR 0 0 1 0 Q9HAW4 Q9HAW4 Q9HAW4 CLSPN Claspin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.300170898438 2 470.718043 939.421532 40750.9743839784 1.6926 0.00079673 243420 114.58 243420 114.58 585.299509675513 64.955 0.82996 64.955 64.654 65.483 0 78 28 4 0.993579026328183 0.00243997210507821 0.0494462544470726 0.0010687 1 15232 113.66 93.205 2 59259000 12759 22196 13101 22025 12205 12534 11377 16340 22512 4189.9 12075 20967 13160 22473 12438 13042 11925 16369 21740 4323.5 1 1 1 1 1 1 1 1 1 1 4754 1975 4186 4461 5273 5273 3592 SPSPKPTK 8 2 Phospho (STY) _S(ph)PS(ph)PKPTK_ S(0.998)PS(0.969)PKPT(0.033)K S(25.91)PS(14.94)PKPT(-14.94)K 0 0 2 1 Q15287 Q15287 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.639221191406 3 334.475003 1000.40318 40527.1687059846 1.469 0.00049133 685140 229.16 685140 229.16 563.972647471684 36.865 4.2412 36.865 35.765 40.006 7.1054E-15 470 149 6 0.998034649385406 0.0302667830234428 0.245940885850713 0.003873 3 8336 93.839 76.813 3 326980000 177140 206260 169610 203720 185180 186390 191130 205080 233830 7099.8 167590 194830 171420 209050 187120 187840 195440 205190 228910 11193 3 3 3 3 3 3 3 3 3 2 4755 1067 4187 4462 5274;5275;5276 5275 1843;1844;4571 SPSPKPTK 8 2 Phospho (STY) _S(ph)PSPKPT(ph)K_ S(0.999)PS(0.014)PKPT(0.987)K S(29.95)PS(-18.95)PKPT(18.95)K 0 0 2 1 Q15287 Q15287 Q15287 RNPS1 RNA-binding protein with serine-rich domain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.955322265625 2 501.208866 1000.40318 35102.2585166637 2.3763 0.001191 685830 343.74 685830 343.75 844.953438232555 37.563 1.3016 37.563 37.396 38.697 0 77 45 2 0.989255964095162 0.000567671143293228 0.0184663460930875 0.0044835 1 8541 94.767 78.135 3 37124000 15778 17792 15869 17817 16876 16810 18064 17203 19383 4528 14930 16807 15988 18276 17085 16908 18367 17378 19069 4661.8 1 1 1 1 1 1 1 1 1 1 4756 1067 4187 4462 5277 5277 1843;1844;4571 SPSPLVSLQAVK 12 Phospho (STY) _S(ph)PSPLVSLQAVK_ S(0.5)PS(0.5)PLVSLQAVK S(0)PS(0)PLVS(-76.87)LQAVK 0 0 1 0 Q9UPZ3 Q9UPZ3 Q9UPZ3 HPS5 Hermansky-Pudlak syndrome 5 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 588.673706054688 3 435.898649 1304.67412 40918.8418617667 1.3746 0.00059917 350480 152.78 350480 152.78 588.67388716604 84.154 0.4583 84.154 83.927 84.385 0 53 15 5 0.846098127025255 0.00290032020420914 0.0374777459483222 4.2431E-11 1 19654 193.51 152.99 3 20145000 10860 6065.6 10235 7002.7 3958.4 10625 5695.2 7999.6 6079.2 4590.9 10274 5735.3 10268 7191.2 4412.5 10464 5724.3 8264.2 5982.1 4508 1 1 1 1 1 1 1 1 1 1 4757 2225 4188 4463 5278 5278 4029;4030 SPSPPLPTHIPPEPPRTPPFPAK 23 2 Phospho (STY) _SPS(ph)PPLPTHIPPEPPRT(ph)PPFPAK_ S(0.4)PS(0.6)PPLPTHIPPEPPRT(1)PPFPAK S(-1.77)PS(1.77)PPLPT(-55.34)HIPPEPPRT(92.36)PPFPAK 0 0 2 1 Q8IZ21 Q8IZ21 Q8IZ21 PHACTR4 Phosphatase and actin regulator 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.904907226563 4 655.070846 2616.25428 36188.3846244093 1.8445 0.0012083 174920 114.58 174920 114.58 769.90386218908 80.91 4.9383 80.91 79.106 84.044 0 390 170 3 0.713639082419769 0.00232105640349903 0.0116491543323261 2.4043E-12 5 19400 188.8 169.27 6 32582000 25959 33581 28253 39682 35401 28625 34175 36579 38298 138850 24572 31758 28403 40194 35490 29547 34959 40566 37614 131590 5 5 5 5 5 5 5 5 5 5 4758 1439 4189 4464 5279;5280;5281;5282;5283 5283 2671;4666 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 Phospho (STY) _SPS(ph)PPTQHTGQPPGQPSAPSQLSAPR_ S(0.056)PS(0.942)PPT(0.002)QHTGQPPGQPSAPSQLSAPR S(-12.22)PS(12.22)PPT(-27.49)QHT(-76.83)GQPPGQPS(-162.74)APS(-169.74)QLS(-179.23)APR 0 0 1 0 Q68EM7 Q68EM7 Q68EM7 ARHGAP17 Rho GTPase-activating protein 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 973.147583007813 3 896.423962 2686.25006 31416.3649155531 1.6254 0.0014571 85214 76.388 85216 76.389 973.145614692288 46.364 0.69829 46.364 45.876 46.574 0 92 23 5 0.978978225567663 0.00241010892361243 0.0530350931979353 2.3336E-12 1 10632 203.82 176.98 7 29208000 8204 6994.4 7592 5144.8 7974.5 8745.6 9892.4 8982.8 7220.4 6457.6 7760.8 6596.8 7688.1 5453.2 8094.6 8620.6 9904.3 9195.8 7237.7 6288.5 1 1 1 1 1 1 1 1 1 1 4759 1230 4190 4465 5284 5284 2170 SPSPSLSSLLLPSSPGPR 18 Phospho (STY) _S(ph)PSPSLSSLLLPSSPGPR_ S(0.491)PS(0.491)PS(0.017)LSSLLLPSSPGPR S(0)PS(0)PS(-14.54)LS(-62.24)S(-79.3)LLLPS(-131.64)S(-132.01)PGPR 0 0 1 0 Q8TER5 Q8TER5 Q8TER5 ARHGEF40 Rho guanine nucleotide exchange factor 40 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.703186035156 3 620.315191 1857.92374 38112.5901638477 1.6973 0.0010528 123150 76.389 123150 76.39 697.038169789075 96.825 0.89614 96.825 96.289 97.185 0 48 30 2 0.720744387070719 0.00103285049098293 0.0155951708202588 1.265E-05 1 22531 132.01 98.33 7 6023600 2635.7 3294.2 2764.8 2998.7 4169.7 3419.6 3152 3022.8 3404.4 8840.3 2494.6 3110.3 2791.8 3103.7 4134.4 3420.5 3264.3 3313.9 3348.4 8394.1 1 1 1 1 1 1 1 1 1 1 4760 1554 4191 4466 5285 5285 2853;2854 SPSPVLR 7 Phospho (STY) _SPS(ph)PVLR_ S(0.272)PS(0.728)PVLR S(-4.28)PS(4.28)PVLR 0 0 1 0 O43432 O43432 O43432 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 532.789245605469 2 418.207311 834.400069 42635.4936680696 1.1167 0.00046701 273980 114.58 273980 114.58 532.788851964935 43.883 0.50338 43.883 43.668 44.172 0 47 16 4 0.993542825454392 0.00132126298876646 0.0330693059818432 0.0031569 1 10046 100.02 46.049 2 41051000 16443 11420 16840 12668 16945 17743 17857 15820 10995 1899.5 15561 10795 16937 13012 17196 17537 17945 16000 11140 2154.8 1 1 1 1 1 1 1 1 1 1 4761 112 4192 4467 5286 5286 193 SPSPVQGK 8 Phospho (STY) _SPS(ph)PVQGK_ S(0.065)PS(0.935)PVQGK S(-11.57)PS(11.57)PVQGK 0 0 1 0 Q96JP5 Q96JP5 Q96JP5 ZFP91 E3 ubiquitin-protein ligase ZFP91 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.366577148438 2 440.202225 878.389898 38088.6419553908 1.3497 0.00059414 520590 229.16 520590 229.16 669.366178446487 37.074 0.65084 37.074 36.66 37.311 7.1054E-15 61 22 4 0.800185115855911 0.00700678001934515 0.283873426788961 0.0062448 1 8359 92.866 60.858 2 93798000 76763 72433 86813 78467 51659 87422 59891 74089 79452 5456.6 72675 68459 86423 80343 54634 87071 61104 74998 77566 6852.7 1 1 1 1 1 1 1 1 1 1 4762 1702 4193 4468 5287 5287 3138 SPSPYYSR 8 Phospho (STY) _S(ph)PSPYYSR_ S(0.998)PS(0.002)PYYSR S(27.48)PS(-27.48)PY(-68.76)Y(-75.29)S(-80.14)R 0 0 1 0 P62995;Q13595 P62995;Q13595 P62995 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.293518066406 2 518.710415 1035.40628 39767.5425976503 1.9408 0.0010067 220900 114.58 220900 114.58 633.293451133916 39.001 1.2203 39.001 38.668 39.889 0 87 41 4 0.729057580201296 0.00431600514761412 0.108832908852126 6.4153E-05 1 8846 137.95 85.698 5 48567000 30430 35473 34331 30430 47718 33161 56813 45766 39826 5051.6 28809 33481 34526 31596 47746 33285 56929 45570 40017 5815.8 1 1 1 1 1 1 1 1 1 1 4763 776;970 4194 4469 5288 5288 1251;1252 SPSPYYSR 8 2 Phospho (STY) _S(ph)PS(ph)PYYSR_ S(0.999)PS(0.986)PY(0.014)YSR S(32.46)PS(18.54)PY(-18.54)Y(-39.54)S(-45.69)R 0 0 2 0 P62995;Q13595 P62995;Q13595 P62995 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.275329589844 2 558.69358 1115.37261 39268.2671599337 1.5516 0.00086685 205090 114.58 205090 114.58 673.274775280013 39.942 1.8387 39.942 38.962 40.8 -7.1054E-15 126 62 3 0.982535856193344 0.000535602716720489 0.00808666956121393 0.051698 1 8952 71.03 41.263 10 13026000 23163 19341 23375 17319 23991 24388 26476 23036 19748 5419.1 21919 18259 23537 18020 24338 24123 26647 23322 19770 5635.8 1 1 1 1 1 1 1 1 1 1 4764 776;970 4194 4470 5289 5289 1251;1252 SPSRTEK 7 Phospho (STY) _SPS(ph)RTEK_ S(0.002)PS(0.989)RT(0.009)EK S(-27.67)PS(20.48)RT(-20.48)EK 0 0 1 1 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.860778808594 2 442.697307 883.380061 38801.510194114 2.1745 0.00096264 517650 229.16 517650 229.16 671.860748261149 26.331 0.41002 26.331 26.073 26.483 0 33 13 3 0.990381834508991 0.00317035406097047 0.0645008718932339 0.015729 1 5867 75.566 25.458 3 16833000 20469 6336.2 17357 6587.2 6071.2 18827 7444 11540 5799 14181 19357 5987 17521 6944.9 6845.3 18260 7466.4 12285 5791.7 13620 1 1 1 1 1 1 1 1 1 1 4765 1243 4195 4471 5290 5290 2193;2194 SPSSKPSLAVAVDSAPEVAVK 21 Phospho (STY) _SPS(ph)SKPSLAVAVDSAPEVAVK_ S(0.269)PS(0.356)S(0.356)KPS(0.019)LAVAVDSAPEVAVK S(-1.21)PS(0)S(0)KPS(-12.64)LAVAVDS(-90.66)APEVAVK 0 0 1 1 O60508 O60508 O60508 CDC40 Pre-mRNA-processing factor 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.647094726563 4 530.522518 2118.06097 37307.1904541818 2.3294 0.0012358 323970 171.87 323970 171.87 702.645462457787 81.918 0.60913 81.918 81.564 82.173 0 78 20 5 0.903217780884003 0.00421704247326444 0.0966666187774631 2.5388E-11 1 19145 187.17 155.37 5 36669000 10693 7650.9 10779 9656.8 5796.8 10730 6191.9 10203 9442.6 10950 10119 7239 10789 9810.1 6185.5 10721 6372.9 10585 9179.1 10547 1 1 1 1 1 1 1 1 1 1 4766 149 4196 4472 5291 5291 254;255 SPSSVTGNALWK 12 Phospho (STY) _S(ph)PSSVTGNALWK_ S(1)PSSVTGNALWK S(33.79)PS(-33.79)S(-42.69)VT(-62.54)GNALWK 0 0 1 0 Q9NYB0 Q9NYB0 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 892.970458984375 2 663.808117 1325.60168 32547.9065737613 2.1342 0.0014167 345220 229.16 345230 229.16 892.969270293542 79.167 0.89688 79.167 78.521 79.418 0 39 30 2 0.751974746176569 0.000591039814349664 0.014230797719374 6.1238E-05 1 18543 129.77 66.299 4 17280000 12738 19570 13694 16966 14331 14516 13986 18444 21566 27690 12057 18473 13742 17539 14508 14761 14461 19183 20958 26500 1 1 1 1 1 1 1 1 1 1 4767 2070 4197 4473 5292 5292 3740 SPSTLLPK 8 Phospho (STY) _S(ph)PSTLLPK_ S(0.844)PS(0.151)T(0.005)LLPK S(7.47)PS(-7.47)T(-22.37)LLPK 0 0 1 0 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 460.935577392578 3 308.159693 921.457249 46360.4714240506 0.6429 0.00019812 495770 152.78 495770 152.78 460.934946958079 72.624 0.84599 72.624 72.196 73.042 0 80 28 4 0.942494474416725 0.001763835856237 0.0254374400512224 0.0028341 1 17012 95.608 40.544 3 23224000 8018.9 16969 7458.5 17475 7161 7790.6 6852.8 11031 17214 1015.5 7585.8 16033 7538.3 17757 7290 8283.7 7274.1 10970 16546 1211.5 1 1 1 1 1 1 1 1 1 1 4768 491 4198 4474 5293 5293 811 SPSTTYLHTPTPSEDAAIPSK 21 Phospho (STY) _SPSTT(ph)YLHTPTPSEDAAIPSK_ S(0.14)PS(0.14)T(0.14)T(0.581)YLHTPTPSEDAAIPSK S(-6.19)PS(-6.19)T(-6.19)T(6.19)Y(-70.14)LHT(-57.09)PT(-105.66)PS(-145.69)EDAAIPS(-227.65)K 0 0 1 0 Q13111 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 913.4638671875 3 760.685901 2279.03587 32375.1490633215 1.7834 0.0013566 200840 152.78 200840 152.78 913.795288007356 67.555 0.64737 67.555 67.269 67.916 0 91 21 6 0.989156454755363 0.00485087453025737 0.161707185470507 3.9456E-23 1 15832 267.25 232.07 9 89403000 8906.5 10984 10945 10575 8646 11407 10654 14034 11601 19513 8435.5 10374 10880 10896 8939.1 11466 10774 14563 11407 18699 1 1 1 1 1 1 1 1 1 1 4769 923 4199 4475 5294 5294 4526 SPSYTNDSTATFIIDGMHCK 20 Phospho (STY) _S(ph)PSYTNDSTATFIIDGMHCK_ S(0.987)PS(0.007)Y(0.005)TNDSTATFIIDGMHCK S(21.24)PS(-21.24)Y(-22.64)T(-38.86)NDS(-67.17)T(-92.6)AT(-115.06)FIIDGMHCK 0 0 1 0 Q04656 Q04656 Q04656 ATP7A Copper-transporting ATPase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 928.769348144531 3 775.656959 2323.94905 32041.1848629745 1.5082 0.0011698 196960 152.78 196960 152.78 928.766265385516 87.721 0.52972 87.721 87.378 87.908 0 55 17 4 0.781837496503584 0.00270969468630754 0.0307559779875272 3.0971E-16 1 20426 223.64 198.23 7 21279000 3629.5 6262.9 3482.6 6142.2 3879.1 3420.7 4723.7 5614.4 5627 56180 3433.9 5915.7 3521.7 6270.3 3925.9 3683.5 4792.5 7239.4 5513.9 53030 1 1 1 1 1 1 1 1 1 1 4770 862 4200 4476 5295 5295 1400 SPTEDFR 7 Phospho (STY) _S(ph)PTEDFR_ S(0.972)PT(0.028)EDFR S(15.38)PT(-15.38)EDFR 0 0 1 0 Q8IXT5 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.763916015625 2 466.18149 930.348427 41349.4231417355 1.5404 0.00071813 245790 114.58 245790 114.58 580.76300909992 44.215 0.71781 44.215 43.934 44.652 7.1054E-15 66 24 5 0.687590631042054 0.00222999122855238 0.0765502488073501 0.0022023 1 10117 104.2 54.074 2 70798000 22085 27788 22773 28461 21024 21443 22805 24628 31034 3830.6 20901 26254 22873 29069 21471 21854 23353 24695 30273 4176.9 1 1 1 1 1 1 1 1 1 1 4771 1429 4201 4477 5296 5296 2607 SPTGPSNSFLANMGGTVAHK 20 Oxidation (M),Phospho (STY) _S(ph)PTGPSNSFLANM(ox)GGTVAHK_ SPTGPSNSFLANM(1)GGTVAHK S(0.999)PT(0.001)GPSNSFLANMGGTVAHK SPTGPSNSFLANM(217.7)GGTVAHK S(30.54)PT(-30.54)GPS(-78.75)NS(-98.8)FLANMGGT(-191.36)VAHK 0 1 1 0 Q96I25 Q96I25 Q96I25 RBM17 Splicing factor 45 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.421813964844 3 690.310111 2067.9085 34556.631613506 1.4828 0.0010236 221310 152.78 221320 152.78 843.419885919859 60.68 0.58046 60.68 60.429 61.009 0 75 19 5 0.975712413275749 0.00223694642883673 0.0288263059108896 3.9442E-16 1 14207 217.7 192.65 5 23623000 7850.1 9995.3 8842.6 10974 9309.3 10086 10987 10409 10647 10863 7432 9447.7 8855.8 11194 9442.9 10174 11094 10756 10519 10470 1 1 1 1 1 1 1 1 1 1 4772 1691 4202 4478 5297 5297 198 3107 SPTGPSNSFLANMGGTVAHK 20 Phospho (STY) _S(ph)PTGPSNSFLANMGGTVAHK_ S(0.997)PT(0.003)GPSNSFLANMGGTVAHK S(25.49)PT(-25.49)GPS(-117.02)NS(-143.62)FLANMGGT(-281.99)VAHK 0 0 1 0 Q96I25 Q96I25 Q96I25 RBM17 Splicing factor 45 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.089721679688 3 684.978473 2051.91359 33610.8377351302 1.4051 0.00096244 223040 152.78 223040 152.78 838.088366568324 79.994 0.75995 79.994 79.644 80.404 0 105 25 5 0.996018580128766 0.0327870356720359 0.317620587810818 7.7072E-32 1 18725 313.03 293.31 5 198600000 33895 48603 36708 46888 30636 44488 39980 51980 57494 12497 32084 45904 36745 48209 31597 44817 40727 52226 55986 12970 1 1 1 1 1 1 1 1 1 1 4773 1691 4202 4479 5298 5298 3107 SPTKAPHLQLIEGK 14 Phospho (STY) _S(ph)PTKAPHLQLIEGK_ S(0.996)PT(0.004)KAPHLQLIEGK S(24.06)PT(-24.06)KAPHLQLIEGK 0 0 1 1 O43491 O43491 O43491 EPB41L2 Band 4.1-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.1142578125 3 533.614912 1597.82291 37705.4466959431 2.1933 0.0011704 429450 229.16 429460 229.16 762.778252177625 67.497 0.49661 67.497 67.269 67.765 0 52 16 4 0.684148503810906 0.0029828161419136 0.0830986090920411 7.8653E-07 1 15837 142.43 111.04 2 20128000 28999 9541.4 32569 11173 10943 30153 10775 18153 12084 10764 27454 9022.7 32325 11677 12381 29246 11012 18998 11868 10556 1 1 1 1 1 1 1 1 1 1 4774 114 4203 4480 5299 5299 196 SPTMEQAVQTASAHLPAPAAVGR 23 Phospho (STY) _S(ph)PTMEQAVQTASAHLPAPAAVGR_ S(0.975)PT(0.025)MEQAVQTASAHLPAPAAVGR S(15.96)PT(-15.96)MEQAVQT(-88.08)AS(-128.88)AHLPAPAAVGR 0 0 1 0 Q8ND56 Q8ND56 Q8ND56 LSM14A Protein LSM14 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.437561035156 3 790.713908 2369.11989 32953.4125813343 1.6407 0.0012973 96610 76.391 96611 76.392 867.438372519937 83.62 1.1012 83.62 83 84.102 1.4211E-14 137 37 5 0.98214380623216 0.00581030249159273 0.0988420700058303 1.1105E-17 2 19499 223.65 199.46 4 29520000 11658 11359 12921 11056 11838 13421 14802 15860 12433 35017 11036 10729 12931 11408 12117 13443 14860 16869 12368 33340 2 2 2 2 2 2 2 2 2 2 4775 1502 4204 4481 5300;5301 5301 2757 SPTPAPFSPFNPTSLIK 17 Phospho (STY) _S(ph)PTPAPFSPFNPTSLIK_ S(0.829)PT(0.168)PAPFS(0.003)PFNPTSLIK S(6.93)PT(-6.93)PAPFS(-24.9)PFNPT(-84.08)S(-93.54)LIK 0 0 1 0 Q99607 Q99607 Q99607 ELF4 ETS-related transcription factor Elf-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.754089355469 3 627.644649 1879.91212 36016.7736346809 0.85491 0.00053658 243410 152.78 243410 152.78 780.753317034087 101.38 0.11522 101.38 101.3 101.42 0 11 3 4 0.747217421492736 0.0036293615702898 0.027905113955933 2.9953E-05 1 23827 127.49 105.62 5 39410000 42354 28273 34716 23766 37421 38029 33392 37812 25571 83921 40049 26683 35422 24906 37751 37637 33970 40466 25563 79897 1 1 1 1 1 1 1 1 1 1 4776 1777 4205 4482 5302 5302 3278 SPTTVLFTSSPIK 13 Phospho (STY) _SPTTVLFTSS(ph)PIK_ SPTTVLFTS(0.046)S(0.954)PIK S(-94.43)PT(-94.43)T(-94.43)VLFT(-43.5)S(-13.19)S(13.19)PIK 0 0 1 0 Q2KHR2 Q2KHR2 Q2KHR2 RFX7 DNA-binding protein RFX7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 639.691040039063 3 486.581097 1456.72146 38564.6762554798 0.9445 0.00045958 313980 152.78 313980 152.78 639.690604122135 87.865 0.43991 87.865 87.587 88.027 0 30 14 3 0.771168423154922 0.00118732513833616 0.0167831909055071 8.1524E-05 1 20497 120.92 99.291 6 6466000 5165.7 3373.6 5649.7 4141.6 2979.8 4765.8 3365.7 5085.2 3488.2 6487.6 4889.9 3191.3 5629.1 4215.6 3187.2 4765.3 3410.8 5283.9 3436.6 6226.6 1 1 1 1 1 1 1 1 1 1 4777 1120 4206 4483 5303 5303 1947 SPVGKSPPSTGSTYGSSQK 19 Phospho (STY) _SPVGKS(ph)PPSTGSTYGSSQK_ SPVGKS(0.953)PPS(0.018)T(0.028)GSTYGSSQK S(-35.24)PVGKS(15.33)PPS(-17.23)T(-15.33)GS(-38.5)T(-38.41)Y(-89.63)GS(-74.1)S(-80.46)QK 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 874.129028320313 3 644.629727 1930.86735 34273.9002087499 1.4303 0.00092204 355500 229.16 355500 229.16 873.79242971026 48.742 0.80666 48.742 48.246 49.053 7.1054E-15 70 27 3 0.945863054405245 0.00136671462254925 0.0131324754504846 3.8391E-06 1 11250 136.71 112.42 9 22629000 15564 14932 17409 14275 22049 18152 28153 20079 16488 8061.7 14735 14102 17492 14760 22176 18061 28045 20309 16763 8055.7 1 1 1 1 1 1 1 1 1 1 4778 2257 4207 4484 5304 5304 4179 SPVPSAFSDQSR 12 Phospho (STY) _S(ph)PVPSAFSDQSR_ S(1)PVPSAFSDQSR S(36.8)PVPS(-36.8)AFS(-57.43)DQS(-65.17)R 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.876770019531 2 679.292831 1356.57111 34907.546692482 2.0862 0.0014172 168680 114.58 168680 114.58 793.874686241144 53.988 0.64348 53.988 53.656 54.299 0 69 21 4 0.98302068164626 0.00115000597739823 0.0193450609108175 0.010014 1 12551 83.541 61.212 4 47978000 19356 24437 18111 24817 12863 19477 12266 18006 24872 18729 18312 23087 18243 25373 13367 19778 12860 18682 24006 18052 1 1 1 1 1 1 1 1 1 1 4779 2226 4208 4485 5305 5305 4058 SPVPSPGSSSPQLQVK 16 Phospho (STY) _SPVPSPGSSS(ph)PQLQVK_ SPVPSPGS(0.003)S(0.078)S(0.919)PQLQVK S(-98.86)PVPS(-42.48)PGS(-25.65)S(-10.71)S(10.71)PQLQVK 0 0 1 0 Q8N3F8 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1067.07788085938 2 837.90856 1673.80257 31880.4205569187 2.0177 0.0016907 273490 229.16 273500 229.16 1067.0724415271 64.778 0.37292 64.778 64.622 64.995 0 19 12 3 NaN 0 0 6.6779E-16 1 15223 235.26 192.63 5 5136200 6135.8 5764.7 6064.3 5828.4 5411 5707 5702.1 5542 5067.4 12939 5805.7 5446 6103 5978.6 5533.2 5748.1 5772.9 5955.3 5026.9 12312 1 1 1 1 1 1 1 1 1 1 4780 1462 4209 4486 5306 5306 2708 SPVSPLAAQGIPLPAQLTK 19 Phospho (STY) _SPVS(ph)PLAAQGIPLPAQLTK_ S(0.27)PVS(0.73)PLAAQGIPLPAQLTK S(-4.31)PVS(4.31)PLAAQGIPLPAQLT(-121.13)K 0 0 1 0 Q96SI1 Q96SI1 Q96SI1 KCTD15 BTB/POZ domain-containing protein KCTD15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.465881347656 3 656.690369 1967.04928 35110.2587009443 1.9359 0.0012713 232640 152.77 232650 152.78 809.799306487616 100.02 0.13744 100.02 99.92 100.06 0 15 4 4 0.824341147790435 0.00201143471408305 0.0407501952377082 1.5703E-05 1 23318 130.34 111.02 3 59069000 14950 15787 18348 14539 16341 14434 14855 16168 18004 27690 14159 14907 18253 15003 16684 14547 15279 16985 17631 26448 1 1 1 1 1 1 1 1 1 1 4781 1749 4210 4487 5307 5307 3207 SPVSTRPLPSASQK 14 Phospho (STY) _S(ph)PVSTRPLPSASQK_ S(0.998)PVS(0.002)TRPLPSASQK S(27.03)PVS(-27.03)T(-42.12)RPLPS(-111.2)AS(-126.74)QK 0 0 1 1 Q8ND56 Q8ND56 Q8ND56 LSM14A Protein LSM14 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.035827636719 3 512.259017 1533.75522 38099.199229277 1.477 0.00075661 298240 152.78 298240 152.78 665.035014329555 46.529 1.0097 46.529 46.14 47.15 0 179 34 7 0.973318392106215 0.0199316961535362 0.353464565925608 2.278E-07 1 10692 166.3 140.15 5 2383400000 68933 55847 70819 56237 57933 71500 69999 65029 56997 8311 65236 52759 71068 57964 59710 70921 70317 65730 56790 9330.8 1 1 1 1 1 1 1 1 1 1 4782 1502 4211 4488 5308 5308 2756 SPVVELSK 8 Phospho (STY) _S(ph)PVVELSK_ S(1)PVVELSK S(55.2)PVVELS(-55.2)K 0 0 1 0 P25098 P25098 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.897583007813 2 469.733358 937.452164 38253.6561684457 2.0096 0.00094399 487860 229.16 487860 229.16 698.896311805365 65.555 0.64119 65.555 65.256 65.897 0 62 21 4 0.753662470620671 0.00254019294548921 0.10387975441554 0.0015655 1 15382 101.64 71.87 2 26810000 25310 14375 25955 15004 23214 26116 26042 21408 14485 6728.3 23952 13583 26070 15546 23749 25635 26056 21859 14782 6831 1 1 1 1 1 1 1 1 1 1 4783 473 4212 4489 5309 5309 787 SPYKFPSSPLR 11 Phospho (STY) _SPYKFPSS(ph)PLR_ SPYKFPS(0.017)S(0.983)PLR S(-60.86)PY(-75.27)KFPS(-17.68)S(17.68)PLR 0 0 1 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.330871582031 3 453.554994 1357.64315 40361.1548722824 1.6401 0.00074386 336840 152.78 336840 152.78 606.330317326753 67.521 0.67679 67.521 67.21 67.887 0 80 22 5 0.979724232097855 0.00480786031487331 0.177772376953587 0.00016348 1 15836 103.66 72.131 4 39093000 21786 11442 22741 11080 5740.2 21996 4993.7 13086 12110 2801.9 20618 10807 22634 11574 6825.2 21454 5313.9 13556 11647 2941.2 1 1 1 1 1 1 1 1 1 1 4784 310 4213 4490 5310 5310 508;509 SPYKFPSSPLR 11 Phospho (STY) _S(ph)PYKFPSSPLR_ S(0.896)PY(0.098)KFPS(0.004)S(0.002)PLR S(9.61)PY(-9.61)KFPS(-23.87)S(-25.85)PLR 0 0 1 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.665954589844 3 453.554994 1357.64315 40341.9540199005 1.8925 0.00085833 336840 152.78 336840 152.78 606.330504674271 69.273 0.78647 69.273 68.912 69.699 0 98 26 5 0.958301272689422 0.00500074112963572 0.0530093530555333 0.014362 1 16226 62.104 35.98 4 67982000 32885 16658 35447 14859 7768.7 38380 8070.6 19811 15672 4481.5 31127 15726 35208 15745 9529.4 37196 8408.8 20726 15141 4678.4 1 1 1 1 1 1 1 1 1 1 4785 310 4213 4490 5311 5311 508;509 SPYKFPSSPLR 11 2 Phospho (STY) _S(ph)PYKFPSS(ph)PLR_ S(1)PYKFPS(0.011)S(0.989)PLR S(41.5)PY(-41.5)KFPS(-19.72)S(19.72)PLR 0 0 2 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 632.986572265625 3 480.210437 1437.60948 39088.4614827847 1.8861 0.00090571 318140 152.78 318140 152.78 632.985749150194 71.185 0.98386 71.185 70.825 71.809 0 99 33 4 0.986882799559998 0.00296693434904227 0.0402803551923411 0.00014214 1 16681 112.16 62.677 6 42896000 13577 14595 14779 11882 3092.2 14387 3743.7 12654 14573 5752.6 12852 13772 14671 12406 3847.5 14298 4076.1 12933 13920 5709.6 1 1 1 1 1 1 1 1 1 1 4786 310 4213 4491 5312 5312 508;509 SPYQEFTDHLVK 12 Phospho (STY) _S(ph)PYQEFTDHLVK_ S(0.851)PY(0.149)QEFTDHLVK S(7.56)PY(-7.56)QEFT(-34.52)DHLVK 0 0 1 0 P15880 P15880 P15880 RPS2 40S ribosomal protein S2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.342468261719 3 515.232468 1542.67557 38517.6509688705 1.7165 0.00088439 296520 152.78 296520 152.78 668.007670544602 80.929 0.44165 80.929 80.752 81.194 0 25 14 2 0.699009360076959 0.00153706540576854 0.0215633625521653 0.0003426 1 18949 100.77 74.651 3 10501000 7277.4 7276.2 7047.2 8091.7 4614.6 8194.9 5916.3 8215.5 8899.5 7612.1 6885.4 6878.2 7082.1 8260.2 4847.8 8224.2 6041.5 8469.3 8654.6 7357.9 1 1 1 1 1 1 1 1 1 1 4787 396 4214 4492 5313 5313 629 SQDAEVGDGTTSVTLLAAEFLK 22 Unmodified _SQDAEVGDGTTSVTLLAAEFLK_ 0 0 0 0 Q99832 Q99832 Q99832 CCT7 T-complex protein 1 subunit eta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 904.491943359375 3 751.381267 2251.12197 32709.8343055531 1.2509 0.00093988 203330 152.78 203330 152.78 904.491049504302 101.62 0.11749 101.62 101.56 101.67 -1.4211E-14 9 3 4 0.875844487100478 0.00527421665514853 0.0682912368381188 1.2992E-08 1 23904 170.56 145.51 1 31199000 8555.3 11832 9639.7 10967 8379.8 9909.7 9032.4 11882 12513 74865 8099.6 11172 9630.1 11297 8590.8 10146 9258.1 14098 12199 70769 1 1 1 1 1 1 1 1 1 1 4788 1793 4215 4493 5314 5314 SQDATFSPGSEQAEK 15 Phospho (STY) _SQDAT(ph)FSPGSEQAEK_ S(0.008)QDAT(0.658)FS(0.334)PGSEQAEK S(-19.37)QDAT(2.94)FS(-2.94)PGS(-67.75)EQAEK 0 0 1 0 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.671630859375 3 554.561202 1660.66178 37628.586666122 1.8799 0.0010425 275490 152.78 275490 152.78 707.670876342299 49.954 0.55388 49.954 49.689 50.242 0 39 18 3 0.856291362384784 0.0020231060118153 0.0188398608452353 6.3258E-07 1 11603 157.42 122.12 4 16893000 17196 20251 15983 21224 17774 16312 16990 18134 21135 6536.8 16267 19136 16184 21654 17924 16605 17445 18316 20678 6574.8 1 1 1 1 1 1 1 1 1 1 4789 1387 4216 4494 5315 5315 2523;4648 SQDATFSPGSEQAEK 15 Phospho (STY) _S(ph)QDATFSPGSEQAEK_ S(0.974)QDAT(0.026)FSPGSEQAEK S(15.8)QDAT(-15.8)FS(-58.39)PGS(-96.17)EQAEK 0 0 1 0 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.671508789063 3 554.561202 1660.66178 37068.6023525299 2.5444 0.001411 275490 152.78 275490 152.78 707.670030461204 51.29 0.43765 51.29 51.051 51.488 7.1054E-15 33 14 3 0.472616219269852 0.000939063546866616 0.00523389782437568 6.8688E-05 1 11937 123.43 85.882 4 9689600 12437 16047 12272 16560 17872 12552 18746 14298 17163 6369.1 11768 15162 12437 16907 17817 12795 18997 14467 17002 6328.2 1 1 1 1 1 1 1 1 1 1 4790 1387 4216 4494 5316 5316 2523;4648 SQDATFSPGSEQAEKSPGPIVSR 23 Phospho (STY) _SQDATFSPGSEQAEKS(ph)PGPIVSR_ SQDATFSPGSEQAEKS(1)PGPIVSR S(-131.21)QDAT(-93.5)FS(-71.48)PGS(-51.91)EQAEKS(51.91)PGPIVS(-51.91)R 0 0 1 1 Q86WB0 Q86WB0 Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 972.15478515625 3 819.042747 2454.10641 31271.4902091378 1.6434 0.001346 186530 152.78 186530 152.78 972.152103462146 57.213 0.52079 57.213 56.928 57.449 0 60 17 5 0.930923843742273 0.00353954895356677 0.0279058041445007 1.0836E-17 1 13357 224.01 197.51 6 38593000 16128 23658 14427 22688 7926.7 17342 8916.8 17214 24488 6766.7 15255 22344 14547 23269 8456.5 17632 9455.4 17476 23502 6770.1 1 1 1 1 1 1 1 1 1 1 4791 1387 4217 4495 5317 5317 2522;2523;4648 SQDDEIGDGTTGVVVLAGALLEEAEQLLDR 30 Unmodified _SQDDEIGDGTTGVVVLAGALLEEAEQLLDR_ 0 0 0 0 P48643 P48643 P48643 CCT5 T-complex protein 1 subunit epsilon MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1115.24230957031 3 1038.521 3112.54118 29270.1983869493 1.6911 0.0017563 73554 76.388 73556 76.389 1115.24316249916 106.07 0.087963 106.07 106 106.08 0 8 2 4 0.985879534670019 0.00293978431501079 0.0082444125564393 1.034E-09 1 24926 175.83 160.77 1 4935400 598.44 470.42 1005.4 318.65 522.56 764.94 1165 999.84 895.35 12484 567.8 443.53 984.28 343.62 567.63 773.28 1147.6 1370 894.88 11778 1 1 1 1 1 1 1 1 1 1 4792 626 4218 4496 5318 5318 SQDFGNLFSFPSYSQK 16 Phospho (STY) _S(ph)QDFGNLFSFPSYSQK_ S(0.935)QDFGNLFS(0.064)FPS(0.001)YSQK S(11.63)QDFGNLFS(-11.63)FPS(-29.6)Y(-54.7)S(-39.32)QK 0 0 1 0 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.72265625 3 644.611896 1930.81386 35176.7080230575 1.8611 0.0011997 237000 152.77 237000 152.78 797.720540049866 100.85 0.28191 100.85 100.67 100.95 0 26 9 5 0.953819209014843 0.00524330186676692 0.0781063520261758 4.4965E-07 1 23644 148.44 124.61 5 65341000 11978 11036 18493 10450 19123 15979 24681 21272 11613 58638 11359 10422 18265 10854 19435 15946 24498 22899 12013 55707 1 1 1 1 1 1 1 1 1 1 4793 855 4219 4497 5319 5319 1380 SQDVAVSPQQQQCSK 15 Phospho (STY) _SQDVAVS(ph)PQQQQCSK_ SQDVAVS(1)PQQQQCSK S(-52.63)QDVAVS(52.63)PQQQQCS(-131.12)K 0 0 1 0 Q96F86 Q96F86 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.699645996094 3 590.588986 1768.74513 36222.9547750385 1.8171 0.0010731 258680 152.78 258690 152.78 743.699026123731 39.434 0.80998 39.434 38.962 39.772 0 125 27 7 0.996017295777995 0.017918442534905 0.11719461751426 1.8736E-10 1 8956 177.4 152.61 3 136620000 43983 64761 39620 66124 64110 41458 67128 55837 75233 9601.2 41603 61185 40452 67415 63663 42855 68408 55741 73888 10333 1 1 1 1 1 1 1 1 1 1 4794 1676 4220 4498 5320 5320 3083 SQEADVQDWEFR 12 Phospho (STY) _S(ph)QEADVQDWEFR_ S(1)QEADVQDWEFR S(225.37)QEADVQDWEFR 0 0 1 0 Q9C0C2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 909.898376464844 2 795.317035 1588.61952 33116.5028721921 1.4427 0.0011474 144070 114.58 144070 114.58 909.89817551151 75.912 0.75969 75.912 75.572 76.332 0 71 25 4 0.727349960022098 0.00164344469321582 0.0307116098306061 5.7018E-16 1 17794 225.37 179.86 1 25874000 12867 14807 12947 14584 19243 10826 19982 15490 15636 36986 12175 13986 13111 14928 19162 11147 20186 16471 15613 35186 1 1 1 1 1 1 1 1 1 1 4795 1885 4221 4499 5321 5321 3433 SQEDLNEPIKR 11 Phospho (STY) _S(ph)QEDLNEPIKR_ S(1)QEDLNEPIKR S(86.55)QEDLNEPIKR 0 0 1 1 Q7Z460 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 623.330505371094 3 470.220451 1407.63952 40021.5149529947 2.131 0.001002 324900 152.78 324900 152.78 622.995805814319 46.182 0.50296 46.182 45.933 46.436 0 61 16 5 0.933377630625269 0.00476287333004412 0.131569199169278 0.0056003 1 10644 86.548 60.007 1 39968000 16794 33016 17350 33605 30701 18338 30631 26796 35890 6423.5 15893 31192 17602 34223 30371 19180 31327 26745 35190 6668.6 1 1 1 1 1 1 1 1 1 1 4796 1338 4222 4500 5322 5322 2413 SQEDMNEPLKR 11 Phospho (STY) _S(ph)QEDMNEPLKR_ S(1)QEDMNEPLKR S(52.17)QEDMNEPLKR 0 0 1 1 O75122 O75122 O75122 CLASP2 CLIP-associating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.318420410156 3 476.205925 1425.59594 38340.9463468896 1.2263 0.00058397 320820 152.78 320820 152.78 629.316950372967 45.654 0.49545 45.654 45.495 45.991 0 36 16 3 0.99193573196248 0.00128616128744544 0.00720935630182727 0.032414 1 10512 52.172 35.948 1 18476000 13879 21033 15103 21036 19890 13290 17589 18587 20847 3615.7 13138 19869 15192 21474 19873 13740 18104 18548 20432 3834.8 1 1 1 1 1 1 1 1 1 1 4797 168 4223 4501 5323 5323 289 SQEELREDK 9 Phospho (STY) _S(ph)QEELREDK_ S(1)QEELREDK S(84.75)QEELREDK 0 0 1 1 P55196 P55196 P55196 MLLT4 Afadin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.950988769531 3 405.17473 1212.50236 41626.3228843339 0.87381 0.00035404 377060 152.78 377060 152.78 557.95007719024 37.389 0.61417 37.389 37.155 37.769 0 56 24 3 0.953101442776807 0.000723577092312916 0.00184434245038306 0.0052934 1 8424 84.753 23.643 1 91469000 33646 55072 33853 51957 41257 35171 36705 46957 66007 4803.5 31839 52006 34158 53268 41394 36160 38383 46789 63886 5609.8 1 1 1 1 1 1 1 1 1 1 4798 720 4224 4502 5324 5324 1199 SQEMVHLVNK 10 Phospho (STY) _S(ph)QEMVHLVNK_ S(1)QEMVHLVNK S(139.73)QEMVHLVNK 0 0 1 0 P16070 P16070 P16070 CD44 CD44 antigen MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.972534179688 3 422.196701 1263.56827 40927.1903105513 2.4032 0.0010146 361860 152.78 361860 152.78 574.971719410582 63.267 0.61719 63.267 62.932 63.549 0 71 20 5 0.963561469324248 0.00532371029541457 0.101934793521313 2.3403E-06 1 14824 139.73 85.323 1 48079000 9384.2 5477.9 11057 6763.9 18959 9605.4 19632 11816 5305.7 2251.2 8886.1 5182.1 11136 6912.2 18769 9533.1 19559 11834 5842.7 2393.2 1 1 1 1 1 1 1 1 1 1 4799 401 4225 4503 5325 5325 635 SQEQEVLER 9 Phospho (STY) _S(ph)QEQEVLER_ S(1)QEQEVLER S(174.46)QEQEVLER 0 0 1 0 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.843200683594 2 599.261 1196.50745 37079.8655550914 1.8154 0.0010879 191200 114.58 191210 114.58 713.84266556295 44.552 0.54388 44.552 44.315 44.859 7.1054E-15 42 18 3 0.907573623129421 0.00153663453489545 0.0514258335387118 3.776E-07 1 10228 174.46 103.49 1 31084000 15031 17042 15359 16914 46973 16987 47053 26162 16125 8058.8 14224 16098 15834 17376 45774 17154 47045 26130 17223 8193.8 1 1 1 1 1 1 1 1 1 1 4800 2180 4226 4504 5326 5326 3940 SQERDNLGMLVWSPNQNLSEAK 22 Phospho (STY) _S(ph)QERDNLGMLVWSPNQNLSEAK_ S(1)QERDNLGMLVWSPNQNLSEAK S(61.05)QERDNLGMLVWS(-61.05)PNQNLS(-136.01)EAK 0 0 1 1 Q9UKL0 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1019.18072509766 3 866.066898 2595.17887 31776.851543628 1.5191 0.0013157 176400 152.78 176400 152.78 1019.17830784952 90.787 0.43703 90.787 90.589 91.026 -1.4211E-14 32 14 3 0.802442917522555 0.00224314707592317 0.065265280499753 1.0486E-08 2 21173 171.02 132.35 3 11473000 12246 11005 12254 10361 9411.9 12555 10348 14723 13471 79585 11588 10393 12305 10713 9735.2 12663 10574 17083 13160 75279 2 2 2 2 2 2 2 2 2 2 4801 2175 4227 4505 5327;5328 5328 3923 SQERPTFYR 9 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)QERPTFYR_ S(1)QERPTFYR S(45.3)QERPT(-45.3)FY(-54.91)R 1 0 1 1 Q16539 Q16539 Q16539 MAPK14 Mitogen-activated protein kinase 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.285400390625 2 653.284809 1304.55507 40229.0305605776 1.0403 0.00067961 0.23534 0.00015374 1.2756 0.00083335 653.285091658158 45.334 0.46271 45.334 45.122 45.585 0 29 15 3 0.978066097586224 0.000507287935486859 0.0027061254412451 0.0041372 1 10443 60.074 32.959 3 34906000 18238 22135 20814 22011 20903 22774 18039 22461 23760 10147 17268 20909 20806 22620 21172 22809 18656 22848 23201 10074 1 1 1 1 1 1 1 1 1 1 4802 1105 4228 4506 5329 5329 1926 SQESGYYDR 9 Phospho (STY) _S(ph)QESGYYDR_ S(0.766)QES(0.228)GY(0.006)YDR S(5.26)QES(-5.26)GY(-21.19)Y(-34.28)DR 0 0 1 0 P43243 P43243 P43243 MATR3 Matrin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.80078125 2 592.716425 1183.4183 37844.942742824 1.0626 0.00062981 193320 114.58 193320 114.58 707.297453227979 34.595 0.46124 34.595 34.398 34.86 0 36 15 3 0.991264356080329 0.000948247636231353 0.0134114631845066 0.015925 1 7739 70.728 53.171 4 33799000 13391 13335 14160 13393 24976 14843 29131 17091 12342 4754.4 12674 12598 14355 13771 24750 14850 28993 17200 12890 4872.4 1 1 1 1 1 1 1 1 1 1 4803 595 4229 4507 5330 5330 971 SQGPPTGESSEPEAK 15 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)QGPPTGESSEPEAK_ S(1)QGPPTGESSEPEAK S(43.73)QGPPT(-43.73)GES(-60.83)S(-66.58)EPEAK 1 0 1 0 Q9UPR3 Q9UPR3 Q9UPR3 SMG5 Protein SMG5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 926.414916992188 2 811.832715 1621.65088 32914.8696211844 1.5924 0.0012928 141140 114.58 141140 114.58 926.414445264181 39.486 0.63389 39.486 39.169 39.803 7.1054E-15 46 21 3 0.9523280376416 0.000647620821989627 0.0159087063947777 3.4124E-11 1 8973 148.28 118.3 4 14566000 5269 3434.8 4580.8 3075.8 7535.2 4029.2 7906.3 5678.8 4461.1 3733.7 4983.2 3242.7 4689 3195.3 7474.3 4023.8 7935.8 5744.8 4547.9 3647.2 1 1 1 1 1 1 1 1 1 1 4804 2218 4230 4508 5331 5331 4013 SQKQEEENPAEETGEEK 17 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)QKQEEENPAEETGEEK_ S(1)QKQEEENPAEETGEEK S(41.26)QKQEEENPAEET(-41.26)GEEK 1 0 1 1 O43768 O43768 O43768 ENSA Alpha-endosulfine MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 848.395690917969 3 695.282833 2082.82667 34134.1940064327 1.8757 0.0013041 219730 152.78 219730 152.78 848.392898126686 44.078 0.98191 44.078 43.785 44.767 0 123 33 6 0.98305644323963 0.00616459321142217 0.0945645153518534 5.4718E-16 1 10075 74.428 54.353 2 154950000 18683 17384 17721 17887 41555 18440 42140 26884 17895 12135 17676 16425 18192 18344 40748 18588 42203 27005 18686 12049 1 1 1 1 1 1 1 1 1 1 4805 128 4231 4509 5332 5332 224 SQKQEEENPAEETGEEKQDTQEK 23 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)QKQEEENPAEETGEEKQDTQEK_ S(1)QKQEEENPAEETGEEKQDTQEK S(64.82)QKQEEENPAEET(-64.82)GEEKQDT(-110.37)QEK 1 0 1 2 O43768 O43768 O43768 ENSA Alpha-endosulfine MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.420715332031 4 704.046277 2812.156 33878.2251701284 1.3863 0.00097604 244120 171.87 244120 171.87 876.170050305262 45.685 0.55378 45.685 45.407 45.961 -7.1054E-15 87 18 6 0.962321314542613 0.0105690625032016 0.0461605932682379 3.9597E-24 2 10517 160.77 133.63 3 132170000 59967 41603 52624 44782 153470 50043 162610 95801 45367 19845 56716 39319 54663 45871 149810 50537 161870 94920 49736 20904 2 2 2 2 2 2 2 2 2 2 4806 128 4232 4510 5333;5334 5334 224 SQPAPPADPDGSPGGAARPIK 21 Phospho (STY) _SQPAPPADPDGS(ph)PGGAARPIK_ SQPAPPADPDGS(1)PGGAARPIK S(-115.99)QPAPPADPDGS(115.99)PGGAARPIK 0 0 1 1 P12980 P12980 P12980 LYL1 Protein lyl-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 842.438171386719 3 689.328271 2064.96298 33962.7299957248 1.5081 0.0010396 221630 152.78 221630 152.78 842.43808108097 47.759 0.55269 47.759 47.541 48.094 0 68 18 5 0.984620749745621 0.00264563578066289 0.0248846904659232 1.4354E-11 1 11050 194.77 169.22 2 34312000 7386.9 17436 9364.5 16338 34183 7262.2 35066 20696 20020 9069.7 6997.3 16465 9621.4 16697 33222 7869.9 35240 20513 20392 9019.2 1 1 1 1 1 1 1 1 1 1 4807 373 4233 4511 5335 5335 610 SQQQPTPVTPK 11 Phospho (STY) _SQQQPTPVT(ph)PK_ SQQQPTPVT(1)PK S(-124.43)QQQPT(-49.45)PVT(49.45)PK 0 0 1 0 O95251 O95251 O95251 KAT7 Histone acetyltransferase KAT7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 874.971008300781 2 645.808117 1289.60168 33810.3185113036 2.2002 0.0014209 354850 229.16 354850 229.16 874.970779215948 39.01 0.52995 39.01 38.725 39.255 0 51 17 4 0.987553235218644 0.00235096740928467 0.106506253371546 3.0401E-10 1 8827 199.41 172.32 3 45518000 32961 24963 33773 22639 18906 33474 22054 27207 26749 2515.8 31193 23568 33785 23561 20113 32995 22426 27609 26194 2998.6 1 1 1 1 1 1 1 1 1 1 4808 239 4234 4512 5336 5336 4359 SQSDCGELGDFR 12 Phospho (STY) _S(ph)QSDCGELGDFR_ S(0.767)QS(0.233)DCGELGDFR S(5.19)QS(-5.19)DCGELGDFR 0 0 1 0 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.351013183594 2 725.768863 1449.52317 34502.5434525695 1.7517 0.0012714 157880 114.58 157880 114.58 840.350196684027 58.341 3.5413 58.341 57.993 61.535 0 350 121 4 0.625804026828131 0.00626145921102532 0.158520479569331 3.553E-07 3 13647 156.29 130.17 2 103890000 205780 79978 200640 80871 77572 206430 85137 126720 88535 101420 194700 75557 200830 84999 86097 200500 86392 133250 87213 98431 3 3 3 3 3 3 3 3 3 3 4809 1243 4235 4513 5337;5338;5339 5337 2197 SQSIEQESQEK 11 Phospho (STY) _SQS(ph)IEQESQEK_ SQS(0.995)IEQES(0.005)QEK S(-49.97)QS(22.79)IEQES(-22.79)QEK 0 0 1 0 Q5VTL8 Q5VTL8 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 915.949401855469 2 686.785036 1371.55552 32811.2201766647 1.5352 0.0010543 333680 229.16 333680 229.16 915.948445514135 40.897 0.39653 40.897 40.714 41.111 0 25 13 2 0.981028819001826 0.000973909955785695 0.00861266787053575 1.9917E-21 1 9319 271 210.7 3 37180000 25769 44243 25508 44223 35754 23809 35403 36230 45815 3433.6 24383 41794 25824 45080 35683 24939 36339 35964 44764 4071.7 1 1 1 1 1 1 1 1 1 1 4810 1203 4236 4514 5340 5340 2107;2108 SQSIEQESQEK 11 Phospho (STY) _S(ph)QSIEQESQEK_ S(0.95)QS(0.05)IEQESQEK S(12.77)QS(-12.77)IEQES(-127.3)QEK 0 0 1 0 Q5VTL8 Q5VTL8 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.969604492188 3 458.19245 1371.55552 40711.7952191226 1.5241 0.00069831 333430 152.78 333430 152.78 610.968324893086 42.85 0.40498 42.85 42.654 43.059 0 37 13 4 0.780688352270889 0.0017484053650512 0.0180025427765833 2.7506E-10 1 9796 187.01 154.94 3 20472000 12612 18259 11987 18179 17404 12302 18026 18509 21517 3142.4 11932 17248 12173 18576 17354 12677 18414 18420 21082 3387.3 1 1 1 1 1 1 1 1 1 1 4811 1203 4236 4514 5341 5341 2107;2108 SQSLPGADSLLAK 13 Phospho (STY) _S(ph)QSLPGADSLLAK_ S(0.621)QS(0.379)LPGADSLLAK S(2.14)QS(-2.14)LPGADS(-83.63)LLAK 0 0 1 0 Q9Y4A5 Q9Y4A5 Q9Y4A5 TRRAP Transformation/transcription domain-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.001831054688 3 456.225313 1365.65411 41061.3597467413 1.887 0.00086091 334870 152.78 334870 152.78 609.000499957555 82.356 0.39852 82.356 82.116 82.514 0 25 13 2 0.98435418106683 0.000352359034203009 0.00679769627264552 5.8923E-07 1 19282 142.3 120.25 3 8952900 5109.5 2844 5284.4 3877.6 7213.8 5557.8 7113.5 5843.7 4458.8 4279.6 4835.6 2692.5 5334.5 3945.3 7202.7 5507.5 7173 5979.6 4512.1 4165 1 1 1 1 1 1 1 1 1 1 4812 2276 4237 4515 5342 5342 4209;4210 SQSLPGADSLLAKPIDK 17 Phospho (STY) _SQS(ph)LPGADSLLAKPIDK_ S(0.007)QS(0.989)LPGADS(0.004)LLAKPIDK S(-21.68)QS(21.68)LPGADS(-23.45)LLAKPIDK 0 0 1 1 Q9Y4A5 Q9Y4A5 Q9Y4A5 TRRAP Transformation/transcription domain-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 836.808349609375 3 607.311558 1818.91284 34209.2424813167 1.9284 0.0011711 377340 229.16 377340 229.16 836.808861585379 84.79 0.63133 84.79 84.524 85.155 0 83 21 5 0.953652289305815 0.00889753086108547 0.226636641169917 2.2084E-07 1 19784 156.31 117.42 3 67995000 13280 14076 15200 13318 25303 14159 25872 19304 15001 20243 12574 13293 15320 13734 25079 14257 26010 19774 15262 19508 1 1 1 1 1 1 1 1 1 1 4813 2276 4238 4516 5343 5343 4209;4210 SQSLPHSATVTLGGTSDPSTLSSSALSER 29 Phospho (STY) _SQS(ph)LPHSATVTLGGTSDPSTLSSSALSER_ S(0.186)QS(0.796)LPHS(0.018)ATVTLGGTSDPSTLSSSALSER S(-6.32)QS(6.32)LPHS(-16.52)AT(-58.35)VT(-129.16)LGGT(-199.81)S(-197.46)DPS(-226.3)T(-225.33)LS(-245.75)S(-251.08)S(-259.73)ALS(-271.56)ER 0 0 1 0 Q8WUA7 Q8WUA7 Q8WUA7 TBC1D22A TBC1 domain family member 22A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1061.51940917969 3 985.131061 2952.37135 29958.8139505584 1.7436 0.0017177 77541 76.388 77543 76.39 1061.85363238338 71.153 0.54735 71.153 70.914 71.461 0 81 18 6 0.888162334773058 0.00479719795003884 0.0496662336553683 1.042E-34 1 16675 298.21 281.9 13 107620000 2644.8 2009.8 2708.6 1974.4 2268.8 3782.2 3334.8 3548.4 2116.4 20902 2502.9 1898.4 2720.3 2058.5 2342.3 3746.8 3310 4198.1 2139.9 19764 1 1 1 1 1 1 1 1 1 1 4814 1563 4239 4517 5344 5344 2875 SQSLPNSLDYTQTSDPGR 18 Phospho (STY) _SQS(ph)LPNSLDYTQTSDPGR_ S(0.182)QS(0.817)LPNSLDYTQTSDPGR S(-6.52)QS(6.52)LPNS(-32.35)LDY(-130.01)T(-123.89)QT(-148.36)S(-153.12)DPGR 0 0 1 0 Q96TC7 Q96TC7 Q96TC7 RMDN3 Regulator of microtubule dynamics protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.021484375 3 682.631908 2044.87389 35479.9908440166 1.7838 0.0012177 111900 76.388 111900 76.389 759.353872086378 61.004 0.67318 61.004 60.747 61.42 0 82 22 5 0.83509968700026 0.0037966468143527 0.0684942370196204 3.1917E-11 1 14274 199.94 184.14 7 104180000 10627 10814 10631 11733 9750.9 12552 14135 14151 12679 10855 10056 10221 10702 12004 10008 12585 14138 14460 12572 10549 1 1 1 1 1 1 1 1 1 1 4815 1760 4240 4518 5345 5345 3247 SQSLPTTLLSPVR 13 Phospho (STY) _SQS(ph)LPTTLLSPVR_ SQS(0.999)LPTTLLSPVR S(-37.46)QS(33.79)LPT(-33.79)T(-49.33)LLS(-105.43)PVR 0 0 1 0 P28290 P28290 P28290 SSFA2 Sperm-specific antigen 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.467712402344 2 739.884356 1477.75416 34227.2340546033 1.3012 0.00096275 154860 114.58 154870 114.58 854.466322249148 86.001 0.54659 86.001 85.731 86.278 0 60 18 4 0.984491541741447 0.00228418468486117 0.0750720140122107 3.1785E-16 1 20046 241.64 155.76 5 44357000 8922.2 14160 10447 11542 17565 9755.8 17297 15000 13299 24266 8448.4 13361 10519 11982 17398 9969.9 17510 15574 13292 23196 1 1 1 1 1 1 1 1 1 1 4816 494 4241 4519 5346 5346 819 SQSLSLQMPPQQDWK 15 Phospho (STY) _S(ph)QSLSLQMPPQQDWK_ S(0.593)QS(0.359)LS(0.047)LQMPPQQDWK S(2.18)QS(-2.18)LS(-10.97)LQMPPQQDWK 0 0 1 0 Q01432 Q01432 Q01432 AMPD3 AMP deaminase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.389831542969 3 618.281493 1851.82265 37795.6186051485 1.9318 0.0011944 247100 152.77 247100 152.78 771.389842136554 84.682 0.73922 84.682 84.329 85.068 1.4211E-14 56 25 3 0.858420216419285 0.00189833208787914 0.0389014508018881 0.00016144 1 19805 102.59 85.101 3 5500500 4717.5 5510.6 4859.6 4216.8 6456.5 4714.2 6965.7 6592.5 6292.9 30575 4464.5 5198.3 4905.7 4416.6 6464.4 4784.2 7047.6 7461.2 6237.7 28943 1 1 1 1 1 1 1 1 1 1 4817 835 4242 4520 5347 5347 1348 SQSMDIDGVSCEK 13 Phospho (STY) _SQS(ph)MDIDGVSCEK_ S(0.412)QS(0.588)MDIDGVSCEK S(-1.55)QS(1.55)MDIDGVS(-67.22)CEK 0 0 1 0 O95155 O95155 O95155 UBE4B Ubiquitin conjugation factor E4 B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.639221191406 3 512.529968 1534.56807 37670.7165150348 2.1888 0.0011218 298080 152.77 298080 152.78 665.30430051586 60.265 0.52193 60.265 60.079 60.601 7.1054E-15 44 17 3 0.882079927848157 0.00268115263515099 0.0188892318930654 0.00010988 1 14132 114.69 98.803 3 15258000 12107 16056 13324 16207 10594 13750 11680 15360 18892 7877.1 11461 15169 13315 16592 10935 13927 12034 15582 18335 7772.7 1 1 1 1 1 1 1 1 1 1 4818 233 4243 4521 5348 5348 403 SQSNPILGSPFFSHFDGQDSYAAAVR 26 Phospho (STY) _SQS(ph)NPILGSPFFSHFDGQDSYAAAVR_ S(0.066)QS(0.934)NPILGSPFFSHFDGQDSYAAAVR S(-11.5)QS(11.5)NPILGS(-47.98)PFFS(-97.19)HFDGQDS(-135.08)Y(-192.17)AAAVR 0 0 1 0 Q9NYL2 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1036.82080078125 3 960.099256 2877.27594 30247.932837307 1.2665 0.001216 79563 76.388 79564 76.389 1036.82079696862 99.989 0.22254 99.989 99.807 100.03 0 17 7 4 0.898389058864273 0.0106447473728562 0.381785031085605 5.9499E-25 1 23305 273.9 244.15 6 115300000 13599 19481 16367 17624 16011 23529 32973 32299 20537 63046 12878 18393 16349 18304 16497 23549 32409 33958 20792 60112 1 1 1 1 1 1 1 1 1 1 4819 2075 4244 4522 5349 5349 3759 SQSPINCIRPSVLGPLK 17 Phospho (STY) _SQS(ph)PINCIRPSVLGPLK_ SQS(1)PINCIRPSVLGPLK S(-35.82)QS(35.82)PINCIRPS(-66.87)VLGPLK 0 0 1 1 Q96E09 Q96E09 Q96E09 FAM122A Protein FAM122A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.447998046875 3 649.335821 1944.98563 35142.4525278393 2.4362 0.0015819 235280 152.77 235280 152.78 802.11101061219 81.623 0.54948 81.623 81.363 81.913 0 73 18 5 0.977447534011935 0.00617717586388542 0.0539282008935188 1.5973E-05 1 19097 132.72 117.84 3 42168000 20896 28352 23443 27973 22345 21590 21051 26919 31745 15054 19783 26781 23444 28642 22732 22021 21783 27249 30870 14798 1 1 1 1 1 1 1 1 1 1 4820 1668 4245 4523 5350 5350 3073 SQSPINCIRPSVLGPLKR 18 Phospho (STY) _SQS(ph)PINCIRPSVLGPLKR_ S(0.041)QS(0.957)PINCIRPS(0.002)VLGPLKR S(-13.71)QS(13.71)PINCIRPS(-26.84)VLGPLKR 0 0 1 2 Q96E09 Q96E09 Q96E09 FAM122A Protein FAM122A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.860900878906 4 526.278962 2101.08674 38407.0203665311 2.0164 0.0010612 217720 114.58 217720 114.58 641.111679725394 72.625 0.8473 72.625 72.311 73.158 0 86 28 4 0.963164857569231 0.00180179880692225 0.0372100985865142 0.047454 1 17050 42.384 27.689 3 17900000 6710.2 9174.9 7345.3 8825.5 5754.9 6211.5 6508.9 7079.8 8447.3 3113.7 6352 8665.2 7341.7 9041.1 5946.5 6359.5 6642.3 7161.7 8252.7 3095.8 1 1 1 1 1 1 1 1 1 1 4821 1668 4246 4524 5351 5351 3073 SQSSDTEQQSPTSGGGK 17 Phospho (STY) _SQSSDTEQQS(ph)PTSGGGK_ SQSSDTEQQS(0.999)PT(0.001)SGGGK S(-125.43)QS(-119.7)S(-113.9)DT(-98.11)EQQS(32.7)PT(-32.7)S(-57.64)GGGK 0 0 1 0 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.681091308594 3 587.570537 1759.68978 36247.7122257751 2.4566 0.0014435 260010 152.78 260010 152.78 740.346240980311 28.304 0.6877 28.304 28.035 28.723 0 103 23 7 0.99568990869497 0.0147867717084252 0.206912446013629 8.7917E-16 1 6275 213.5 193.08 7 183830000 12392 18984 13631 21847 10745 13220 10342 15993 21811 4446.8 11731 17950 13618 22118 11080 13679 10860 16069 21035 4557.3 1 1 1 1 1 1 1 1 1 1 4822 468 4247 4525 5352 5352 769;770;771 SQSSDTEQQSPTSGGGK 17 Phospho (STY) _SQSS(ph)DTEQQSPTSGGGK_ S(0.013)QS(0.104)S(0.876)DT(0.006)EQQSPTSGGGK S(-18.32)QS(-9.24)S(9.24)DT(-21.34)EQQS(-99.85)PT(-141.5)S(-148.3)GGGK 0 0 1 0 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.682250976563 3 587.570537 1759.68978 35666.7724089778 2.4203 0.0014221 260010 152.78 260020 152.78 740.346540985119 30.275 1.954 30.275 29.548 31.502 -3.5527E-15 169 65 4 0.996641746937997 0.011639199273026 0.139815103569355 4.8834E-11 1 6667 198.35 157.55 7 176700000 18196 20813 19747 24146 27344 20072 32988 24349 23954 7977.7 17224 19680 19899 24524 27371 20370 33061 24498 24019 8075.5 1 1 1 1 1 1 1 1 1 1 4823 468 4247 4525 5353 5353 769;770;771 SQSSDTEQQSPTSGGGK 17 2 Phospho (STY) _SQSS(ph)DTEQQS(ph)PTSGGGK_ S(0.009)QS(0.076)S(0.913)DT(0.002)EQQS(0.999)PT(0.001)SGGGK S(-19.98)QS(-10.78)S(10.78)DT(-26.38)EQQS(30.26)PT(-30.26)S(-40.26)GGGK 0 0 2 0 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.337707519531 3 614.22598 1839.65611 36030.8088170819 2.2471 0.0013803 248730 152.78 248730 152.78 767.001685201698 30.488 2.4882 30.488 29.749 32.237 3.5527E-15 180 83 3 0.980786554843508 0.0012793682484055 0.0219410708741231 7.087E-11 2 6742 197.85 183.17 21 11920000 14101 14136 14188 14258 13698 13136 12386 14859 15571 6401.4 13344 13354 14273 14614 13914 13251 12758 15030 15229 6371.6 2 2 2 2 2 2 2 2 2 2 4824 468 4247 4526 5354;5355 5354 769;770;771 SQSSDTEQQSPTSGGGK 17 2 Phospho (STY) _SQS(ph)SDTEQQS(ph)PTSGGGK_ S(0.133)QS(0.559)S(0.28)DT(0.028)EQQS(0.992)PT(0.006)S(0.001)GGGK S(-6.25)QS(3)S(-3)DT(-13.07)EQQS(22.08)PT(-22.08)S(-28.6)GGGK 0 0 2 0 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.0029296875 3 614.22598 1839.65611 NaN NaN NaN NaN NaN NaN NaN NaN 31.597 1 31.597 31.097 32.097 0 NaN NaN NaN 0.0028688 1 7063 97.179 84.043 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4825 468 4247 4526 5356 5356 769;770;771 SQSSLSGKPK 10 Phospho (STY) _S(ph)QSSLSGKPK_ S(0.533)QS(0.258)S(0.206)LS(0.003)GKPK S(3.16)QS(-3.16)S(-4.13)LS(-22.54)GKPK 0 0 1 1 A0JNW5 A0JNW5 A0JNW5 UHRF1BP1L UHRF1-binding protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 596.0087890625 3 366.844544 1097.5118 41040.3136636122 1.5283 0.00056066 624690 229.16 624690 229.16 596.008217547233 39.515 0.49343 39.515 39.309 39.803 -7.1054E-15 36 16 3 0.697107249633088 0.00188433356807855 0.0207734663876495 0.017642 1 8999 59.306 27.243 4 11364000 18220 10761 19051 10502 8528.5 20791 8147.9 13304 10626 4302.9 17244 10164 19006 10964 9273 20294 8380 13764 10380 4359.6 1 1 1 1 1 1 1 1 1 1 4826 2 4248 4527 5357 5357 6 SQSTSEQEKR 10 Phospho (STY) _SQS(ph)TSEQEKR_ S(0.086)QS(0.869)T(0.043)S(0.002)EQEKR S(-10.07)QS(10.07)T(-13.07)S(-25.66)EQEKR 0 0 1 1 P11274 P11274 P11274 BCR Breakpoint cluster region protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 573.289001464844 3 420.513634 1258.51907 41330.5378849451 1.9495 0.00081978 363310 152.77 363310 152.78 573.288495058189 23.977 0.34952 23.977 23.816 24.165 0 34 11 5 0.85536815764382 0.0106058210981883 0.226886809009375 0.00029547 1 5370 103.3 80.411 4 15401000 2815.2 10677 3537.5 10856 6414 3560.9 6546.4 7586.6 11479 2860.3 2666.6 10088 3556 11019 6345.6 3950.7 6792.4 7540.1 11118 2868.9 1 1 1 1 1 1 1 1 1 1 4827 362 4249 4528 5358 5358 589 SQSTTFNPDDMSEPEFK 17 Phospho (STY) _SQS(ph)TTFNPDDMSEPEFK_ S(0.188)QS(0.561)T(0.188)T(0.064)FNPDDMSEPEFK S(-4.75)QS(4.75)T(-4.75)T(-9.42)FNPDDMS(-52.87)EPEFK 0 0 1 0 Q86W92 Q86W92 Q86W92 PPFIBP1 Liprin-beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 834.048034667969 3 680.602849 2038.78672 34810.5093477957 1.4791 0.0010066 224470 152.78 224470 152.78 833.376475239007 80.085 0.60898 80.085 79.704 80.313 0 55 20 4 0.970397003064765 0.00149031034240625 0.0163625425266433 0.012033 1 18741 68.634 56.678 5 10452000 9581.2 5867.3 8369.4 5351.8 8469.5 9763.9 7766.8 8012.1 5489.2 21510 9061.7 5539.7 8497.1 5597.4 8576.9 9608.4 7877.3 8752.7 5512.8 20440 1 1 1 1 1 1 1 1 1 1 4828 1386 4250 4529 5359 5359 2513 SQSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR 36 Phospho (STY) _SQS(ph)VPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR_ S(0.388)QS(0.603)VPAS(0.008)TGLGWGSGLVAPLQEGSIDSTLAGTQDTR S(-1.91)QS(1.91)VPAS(-18.69)T(-33.23)GLGWGS(-72.66)GLVAPLQEGS(-125.68)IDS(-137.25)T(-137.09)LAGT(-145.21)QDT(-147.77)R 0 0 1 0 Q6ZNJ1 Q6ZNJ1 Q6ZNJ1 NBEAL2 Neurobeachin-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1285.63671875 3 1208.57901 3622.71521 27845.625667249 1.6607 0.002007 63204 76.387 63206 76.389 1285.63485728766 100.49 0.14046 100.49 100.42 100.56 0 16 4 5 0.990809097017872 0.00319552367153661 0.0664327997406255 1.7075E-08 1 23509 149.06 142.41 10 78427000 5408.6 3127.9 4981 6497.8 8670.7 5890.5 5308.4 9012 7003.5 105730 5116.3 2974 5079 6456.3 8535.2 6169.7 5611.4 12105 6838.4 99770 1 1 1 1 1 1 1 1 1 1 4829 1293 4251 4530 5360 5360 2309 SQSVPLTVMMQTAFPNALQK 20 Phospho (STY) _S(ph)QSVPLTVMMQTAFPNALQK_ S(0.498)QS(0.498)VPLT(0.004)VMMQTAFPNALQK S(0)QS(0)VPLT(-21.25)VMMQT(-78.22)AFPNALQK 0 0 1 0 Q2KHR2 Q2KHR2 Q2KHR2 RFX7 DNA-binding protein RFX7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 910.479370117188 3 757.701952 2270.08403 33045.9148490054 0.92304 0.00069939 201630 152.78 201630 152.78 910.477951887329 101.49 0.16735 101.49 101.42 101.58 0 13 5 4 0.97486838536518 0.00230967842343591 0.113331017077863 3.7504E-05 1 23870 118.57 100.87 4 34366000 10029 8080.8 8771.4 8429.7 7316.8 9020.4 8579.3 10708 7110.1 108270 9485.2 7635.7 8889.1 8643.5 7527.5 9240.2 8632.1 13938 7077.9 102200 1 1 1 1 1 1 1 1 1 1 4830 1120 4252 4531 5361 5361 1948;1949 SQSWEER 7 Phospho (STY) _SQS(ph)WEER_ SQS(1)WEER S(-35.91)QS(35.91)WEER 0 0 1 0 Q6Y7W6 Q6Y7W6 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.772766113281 2 501.189846 1000.36514 40073.659803012 1.7979 0.00090109 228620 114.58 228620 114.58 615.771452799351 38.117 1.0967 38.117 37.628 38.725 0 105 37 5 0.847264137171774 0.00347785262484921 0.10059064179311 0.0021878 1 8599 104.43 37.93 2 177060000 45135 35923 46617 34192 48743 43087 43617 41049 36493 4111.4 42715 33925 46871 35356 49260 42774 44450 41378 36310 4821.4 1 1 1 1 1 1 1 1 1 1 4831 1288 4253 4532 5362 5362 2300 SQSWEERGDR 10 Phospho (STY) _SQS(ph)WEERGDR_ SQS(1)WEERGDR S(-54.73)QS(54.73)WEERGDR 0 0 1 1 Q6Y7W6 Q6Y7W6 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.847778320313 2 665.264605 1328.51466 34959.3916293558 1.6019 0.0010657 172230 114.58 172240 114.58 779.846202884491 32.504 0.52557 32.504 32.297 32.822 0 47 17 4 0.973818883078603 0.00127216577132878 0.0175248358245375 2.3845E-06 1 7255 151.55 107.36 2 26923000 15630 11060 12996 10364 14863 14072 15555 13198 11101 4268.8 14780 10444 13262 10744 14979 13937 15679 13401 11142 4325 1 1 1 1 1 1 1 1 1 1 4832 1288 4254 4533 5363 5363 2300 SQTAMSETYDFLFK 14 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)QTAMSETYDFLFK_ S(0.991)QT(0.009)AMSETYDFLFK S(20.62)QT(-20.62)AMS(-46.1)ET(-66.07)Y(-121.59)DFLFK 1 0 1 0 P20338 P20338 P20338 RAB4A Ras-related protein Rab-4A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1009.95501708984 2 895.373161 1788.73177 31185.5078462673 1.4521 0.0013002 127970 114.58 127970 114.58 1009.95411681111 103.82 0.28098 103.82 103.72 104 0 27 9 4 0.912154378431344 0.00899873172883967 0.408338262450655 1.2265E-41 1 24459 156.48 144.21 5 37709000 7057.8 7807.7 7715.3 6353.3 22712 7073.8 28646 13656 6755.9 24981 6680.9 7367.3 7925.9 6623.7 22226 7187.8 28275 14195 7594.5 23838 1 1 1 1 1 1 1 1 1 1 4833 445 4255 4534 5364 5364 721 SQTPERPAK 9 Phospho (STY) _SQT(ph)PERPAK_ S(0.245)QT(0.755)PERPAK S(-4.88)QT(4.88)PERPAK 0 0 1 1 A8CG34;A6NF01;Q96HA1 A8CG34;Q96HA1 Q96HA1 POM121C;POM121B;POM121 Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 517.949340820313 3 365.172773 1092.49649 NaN NaN NaN NaN NaN NaN NaN NaN 28.082 1 28.082 27.582 28.582 0 NaN NaN NaN 0.021043 1 6254 79.492 69.166 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4834 1688;15 4256 4535 5365 5365 4314 SQTPERPAKK 10 Phospho (STY) _SQT(ph)PERPAKK_ S(0.028)QT(0.972)PERPAKK S(-15.39)QT(15.39)PERPAKK 0 0 1 2 A8CG34;A6NF01;Q96HA1 A8CG34;Q96HA1 Q96HA1 POM121C;POM121B;POM121 Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 478.278015136719 4 306.155139 1220.59145 45382.2635946671 0.86906 0.00026607 561390 171.87 561390 171.87 478.027510499483 29.054 0.41301 29.054 28.837 29.25 0 37 13 4 0.883933145395059 0.00300525062550246 0.032866021380479 0.016179 1 6468 63.16 41.913 2 15983000 18733 19172 18956 19692 18275 20307 17577 18110 21091 2457.4 17727 18114 19065 20198 18579 20305 18021 18325 20662 2733 1 1 1 1 1 1 1 1 1 1 4835 1688;15 4257 4536 5366 5366 4314 SQTPPGVATPPIPK 14 Phospho (STY) _SQT(ph)PPGVATPPIPK_ S(0.276)QT(0.724)PPGVATPPIPK S(-4.2)QT(4.2)PPGVAT(-51.57)PPIPK 0 0 1 0 Q15648 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.361511230469 3 490.584842 1468.7327 38805.7052310943 1.7142 0.00084096 311410 152.78 311420 152.78 643.360073529083 68.844 0.93122 68.844 68.388 69.32 0 135 31 5 0.908958242893562 0.00471773837416674 0.0401632721206776 9.4943E-05 1 16098 126.81 107.98 3 142310000 9014.4 8248 8619.5 9255.7 9753.5 9312.3 9143.2 8613.2 8466 5027.9 8528.5 7797.3 8714.8 9442.9 9821.6 9332.4 9317.8 8818.2 8382.1 4933.7 1 1 1 1 1 1 1 1 1 1 4836 1084 4258 4537 5367 5367 4576 SRASPVSR 8 Phospho (STY) _SRAS(ph)PVSR_ S(0.019)RAS(0.975)PVS(0.006)R S(-17.09)RAS(17.09)PVS(-22.21)R 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 584.806213378906 2 470.224023 938.433494 41318.8186348306 2.0287 0.00095393 243670 114.58 243680 114.58 584.80510993499 21.554 0.28575 21.554 21.399 21.685 0 21 9 3 0.958255060774279 0.00691926300822357 0.12738422165543 0.035361 1 4864 55.839 28.067 3 6161700 3241.3 4209.8 3737.4 4290.8 3317.9 3140.3 3336.9 3362.8 3825.2 1535.8 3068.9 3977.3 3729.7 4382.2 3392.5 3204.7 3409.2 3410.8 3753.6 1524 1 1 1 1 1 1 1 1 1 1 4837 2226 4259 4538 5368 5368 4091 SRDKEER 7 Phospho (STY) _S(ph)RDKEER_ S(1)RDKEER S(87.78)RDKEER 0 0 1 2 P08621 P08621 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 486.589202880859 3 333.813356 998.418238 44437.5727072548 1.6717 0.00055804 457670 152.78 457670 152.78 486.588823726357 21.384 1.9813 21.384 21.198 23.179 3.5527E-15 227 68 6 0.996689451933203 0.18887475075754 1 0.0098943 1 4828 87.777 48.155 1 139890000 27574 31097 26741 28703 30941 28177 36268 28154 29394 26184 26089 29363 27036 29609 31220 28316 36473 29030 29295 25307 1 1 1 1 1 1 1 1 1 1 4838 335 4260 4539 5369 5369 547 SRECDITK 8 Phospho (STY) _S(ph)RECDITK_ S(1)RECDITK S(89.82)RECDIT(-89.82)K 0 0 1 1 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 516.262390136719 3 363.486251 1087.43692 43689.5188026324 1.3192 0.00047949 420310 152.78 420310 152.78 516.261919807104 36.309 0.42648 36.309 36.086 36.513 0 52 14 5 0.93014280088991 0.00690428373829502 0.138519107596312 2.6482E-05 1 8187 138.42 89.983 2 47510000 28049 32231 27483 34355 34169 26546 0 29273 35865 2601.3 26540 30459 27724 35020 33831 26996 0 29336 33867 3126.9 1 1 1 1 1 1 0 1 1 1 4839 952 4261 4540 5370 5370 1585 SREDAGDNDDTEGAIGVR 18 Unmodified _SREDAGDNDDTEGAIGVR_ 0 0 0 1 Q9H0S4 Q9H0S4 Q9H0S4 DDX47 Probable ATP-dependent RNA helicase DDX47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.002563476563 3 626.280435 1875.81948 38558.5848138142 0.93871 0.00058789 121970 76.388 121970 76.389 703.003200940954 34.736 0.28175 34.736 34.633 34.915 0 23 9 3 0.830192231260548 0.001707605477624 0.0176369541264419 2.5562E-07 2 7789 161.14 118.57 1 10450000 18242 26614 16770 22686 21328 19615 20829 22760 25673 9378.7 17256 25119 17026 23483 21373 19855 21358 22991 25126 9357.9 2 2 2 2 2 2 2 2 2 2 4840 1908 4262 4541 5371;5372 5371 SREDLSAQPVQTK 13 Phospho (STY) _S(ph)REDLSAQPVQTK_ S(0.977)REDLS(0.023)AQPVQTK S(16.26)REDLS(-16.26)AQPVQT(-159.4)K 0 0 1 1 Q07157 Q07157 Q07157 TJP1 Tight junction protein ZO-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.353881835938 3 513.578527 1537.71375 39341.3484290205 1.7239 0.00088535 297470 152.77 297470 152.78 666.354089517631 43.485 0.63301 43.485 43.242 43.875 -7.1054E-15 63 21 4 0.88692778663277 0.00376423624728861 0.0125965502914539 5.9048E-11 1 9956 197.94 169.31 3 94983000 18042 76302 22508 78024 20590 23462 23618 38893 82804 8415.9 17089 72090 22389 79131 21107 26162 25517 38668 79193 8824.7 1 1 1 1 1 1 1 1 1 1 4841 880 4263 4542 5373 5373 1425 SRESLNVDVVK 11 Phospho (STY) _S(ph)RESLNVDVVK_ S(1)RESLNVDVVK S(41.37)RES(-41.37)LNVDVVK 0 0 1 1 Q07866 Q07866 Q07866 KLC1 Kinesin light chain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.329284667969 3 442.553542 1324.6388 40331.0402070725 1.799 0.00079617 345210 152.78 345220 152.78 595.328838611957 61.016 0.88051 61.016 60.685 61.566 0 84 29 5 0.929721126009579 0.00629576216337172 0.113721496880895 2.8965E-10 1 14278 185.3 129.87 2 118870000 15680 14280 17474 14527 19270 18082 20891 18060 14741 2719.7 14844 13491 17518 14958 19466 17971 21019 18198 14806 2978.9 1 1 1 1 1 1 1 1 1 1 4842 882 4264 4543 5374 5374 1427 SRGSPRYSPR 10 2 Phospho (STY) _SRGS(ph)PRYS(ph)PR_ S(0.203)RGS(0.797)PRY(0.136)S(0.865)PR S(-5.9)RGS(5.9)PRY(-7.97)S(7.97)PR 0 0 2 2 Q07955 Q07955 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.355529785156 2 661.773758 1321.53296 35983.3991894871 1.8516 0.0012253 173140 114.58 173150 114.58 776.355400054929 24.156 0.98396 24.156 23.787 24.771 -3.5527E-15 85 33 4 0.970253836480655 0.0010729454340866 0.040259614160603 0.0091666 1 5361 70.272 49.432 6 12764000 1759.8 2568.9 2535.5 2411.6 2617 1887.7 2586 2411.5 2205.3 2992.8 1668.1 2425.8 2509.5 2477.4 2650.2 1927.7 2623.4 2488.8 2192.2 2873.9 1 1 1 1 1 1 1 1 1 1 4843 884 4265 4544 5375 5375 1434;1435 SRLTPVSPESSSTEEK 16 Phospho (STY) _SRLT(ph)PVSPESSSTEEK_ S(0.031)RLT(0.969)PVSPESSSTEEK S(-14.93)RLT(14.93)PVS(-53.17)PES(-73.23)S(-75.7)S(-82.29)T(-96.84)EEK 0 0 1 1 Q13501 Q13501 Q13501 SQSTM1 Sequestosome-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.387634277344 3 605.278694 1812.81425 35112.0540453781 2.301 0.0013928 252410 152.78 252410 152.78 758.388034767385 46.173 0.50296 46.173 45.933 46.436 0 54 16 5 0.934320110226767 0.0055465303374298 0.117030725371645 4.4192E-08 1 10643 174.97 142.82 7 54060000 30901 25900 33990 31307 22564 28693 22991 30751 33813 12212 29252 24498 33909 31773 23589 28926 23679 31134 32905 12211 1 1 1 1 1 1 1 1 1 1 4844 960 4266 4545 5376 5376 1617;4541 SRNSFSSYAQLPK 13 Phospho (STY) _S(ph)RNSFSSYAQLPK_ S(0.708)RNS(0.287)FS(0.005)SYAQLPK S(3.92)RNS(-3.92)FS(-21.41)S(-43.85)Y(-80.85)AQLPK 0 0 1 1 Q9H9C1 Q9H9C1 Q9H9C1 VIPAS39 Spermatogenesis-defective protein 39 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.355834960938 3 522.243367 1563.70827 37864.7938329155 2.0513 0.0010713 292540 152.78 292540 152.78 675.353756938241 66.302 0.59067 66.302 65.897 66.487 0 47 19 4 0.985570101391242 0.00258919221480438 0.0683821996055054 5.0397E-07 1 15553 146.86 97.23 5 21308000 10457 9995.7 10788 8423.9 13624 9724.5 12905 11394 9909.4 6987 9895.8 9433.7 10878 8766.2 13645 9723.4 13089 11575 9904.7 6842.8 1 1 1 1 1 1 1 1 1 1 4845 1968 4267 4546 5377 5377 3580 SRNSPLLER 9 Phospho (STY) _SRNS(ph)PLLER_ S(0.009)RNS(0.991)PLLER S(-20.42)RNS(20.42)PLLER 0 0 1 1 Q7KZI7 Q7KZI7 Q7KZI7 MARK2 Serine/threonine-protein kinase MARK2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.864868164063 2 576.28207 1150.54959 37802.8282095448 1.762 0.0010154 198830 114.58 198830 114.58 690.863329894407 36.164 0.66344 36.164 35.793 36.457 0 50 22 3 0.581967076642818 0.00130313271342997 0.0250179937998077 0.021301 1 8121 61.989 38.466 2 57129000 19701 25293 18718 24908 19168 19210 19150 23161 28300 3961 18638 23891 18910 25506 19433 19566 19745 23198 27536 4265.7 1 1 1 1 1 1 1 1 1 1 4846 1315 4268 4547 5378 5378 2349 SRPDSPR 7 Phospho (STY) _SRPDS(ph)PR_ S(0.08)RPDS(0.92)PR S(-10.63)RPDS(10.63)PR 0 0 1 1 Q6KC79 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 562.2783203125 2 447.695099 893.375645 42148.2025142378 1.9463 0.00087136 255940 114.58 255940 114.58 562.276870940439 20.14 0.50967 20.14 19.927 20.437 0 29 16 3 0.989927809667189 0.00360209894447587 0.0981018628446277 0.052571 1 4576 47.187 29.278 2 941670 1022.5 342.01 333.96 303.86 380.97 287.94 253.92 429.97 0 2934.6 964.99 322.86 376.21 314.07 381.8 296.64 257.61 514.21 0 2773.3 1 1 1 1 1 1 1 1 0 1 4847 1244 4269 4548 5379 5379 2205 SRPFTVAASFQSTSVKSPK 19 Phospho (STY) _SRPFTVAASFQSTSVKS(ph)PK_ SRPFTVAASFQS(0.002)T(0.004)S(0.02)VKS(0.974)PK S(-96.04)RPFT(-101.2)VAAS(-73.59)FQS(-28.03)T(-23.77)S(-16.87)VKS(16.87)PK 0 0 1 2 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.887390136719 4 527.016131 2104.03542 37954.2157374618 2.0034 0.0010558 326120 171.87 326120 171.87 699.138876461362 67.854 0.65643 67.854 67.587 68.243 1.4211E-14 80 21 5 0.740905752325029 0.000965314873382139 0.0459788901389004 3.6719E-05 1 15969 119.14 91.99 7 12961000 5941.1 6457.3 5521.2 6548.2 7122.8 5625.9 6824.3 6375.7 5573 16115 5620.2 6100.5 5602.8 6703.1 7128.3 5720.1 6926.6 6851.8 5552 15322 1 1 1 1 1 1 1 1 1 1 4848 2144 4270 4549 5380 5380 3863 SRPTSEGSDIESTEPQK 17 Phospho (STY) _SRPTSEGS(ph)DIESTEPQK_ SRPTSEGS(1)DIESTEPQK S(-58.06)RPT(-50.66)S(-35.82)EGS(35.82)DIES(-50.25)T(-61.3)EPQK 0 0 1 1 Q4G0J3 Q4G0J3 Q4G0J3 LARP7 La-related protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.3916015625 3 643.280875 1926.82079 34635.4478338435 1.7378 0.0011179 237490 152.78 237500 152.78 796.390519021426 39.867 0.69307 39.867 39.629 40.322 7.1054E-15 70 23 5 0.932958804320277 0.00653800816808651 0.0796822273019728 5.2771E-11 1 9040 196.96 169.11 6 75105000 35261 32862 33851 34508 20693 38936 25603 26849 34276 11235 33361 31053 34015 35402 21854 38700 26064 27739 33453 11201 1 1 1 1 1 1 1 1 1 1 4849 1138 4271 4550 5381 5381 1981 SRPTSFADELAAR 13 Phospho (STY) _S(ph)RPTSFADELAAR_ S(1)RPTSFADELAAR S(35.1)RPT(-35.1)S(-46.72)FADELAAR 0 0 1 1 Q9Y4E1;Q641Q2;Q5SNT6 Q9Y4E1 Q9Y4E1 FAM21C;FAM21A;FAM21B WASH complex subunit FAM21C;WASH complex subunit FAM21A;WASH complex subunit FAM21B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 577.621948242188 3 500.8996 1499.67697 40690.6239877215 2.0687 0.0010362 152500 76.387 152500 76.388 577.28599648859 63.04 0.55307 63.04 62.79 63.343 0 47 18 3 0.94743371284661 0.00557545927077984 0.0638763258207396 1.127E-05 1 14795 136.33 107.11 3 34311000 11758 5808.5 13638 6061 7038.2 13565 7276.7 9176.7 6449.3 3253.8 11133 5488.5 13544 6328.4 7534.7 13213 7373 9473 6398.6 3276.3 1 1 1 1 1 1 1 1 1 1 4850 1221 4272 4551 5382 5382 2150;4614 SRPTSFADELAAR 13 Phospho (STY) _SRPT(ph)SFADELAAR_ S(0.044)RPT(0.836)S(0.119)FADELAAR S(-12.77)RPT(8.45)S(-8.45)FADELAAR 0 0 1 1 Q9Y4E1;Q641Q2;Q5SNT6 Q9Y4E1 Q9Y4E1 FAM21C;FAM21A;FAM21B WASH complex subunit FAM21C;WASH complex subunit FAM21A;WASH complex subunit FAM21B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.428161621094 2 750.845762 1499.67697 33244.1569059331 2.0762 0.0015589 152600 114.58 152610 114.58 865.426776252127 63.867 0.51861 63.867 63.633 64.152 7.1054E-15 54 17 4 0.960098522456564 0.00107730081887119 0.0265052588693733 1.3318E-05 1 14982 137.27 107.97 3 20997000 14042 7079.7 14890 7968.4 10216 15804 10380 11651 7675 20314 13290 6693 14888 8253.3 10643 15478 10484 12460 7687.6 19397 1 1 1 1 1 1 1 1 1 1 4851 1221 4272 4551 5383 5383 2150;4614 SRQGSLAMEELK 12 Phospho (STY) _S(ph)RQGSLAMEELK_ S(1)RQGSLAMEELK S(51.24)RQGS(-51.24)LAMEELK 0 0 1 1 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.666381835938 3 476.889936 1427.64798 39349.6347277055 2.0833 0.00099348 320360 152.78 320360 152.78 629.665101839472 62.916 0.96331 62.916 62.586 63.549 0 112 32 5 0.997019678348158 0.0191277385380695 0.167460069434543 1.6812E-16 1 14751 238.08 139.72 2 184350000 16575 21277 17380 22044 55003 16551 61824 33234 20676 3415.5 15687 20104 17927 22499 53654 17050 61477 32792 22146 3985.2 1 1 1 1 1 1 1 1 1 1 4852 403 4273 4552 5384 5384 639;643 SRQGSLAMEELK 12 2 Phospho (STY) _S(ph)RQGS(ph)LAMEELK_ S(1)RQGS(1)LAMEELK S(73.11)RQGS(73.11)LAMEELK 0 0 2 1 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.32080078125 3 503.54538 1507.61431 39978.6122639449 2.1189 0.001067 303400 152.78 303400 152.78 656.32024989752 67.179 1.0526 67.179 66.863 67.916 0 99 35 5 0.824738955861749 0.00246114702711123 0.0730543056875156 0.01067 1 15776 73.11 16.511 1 11382000 5836.4 8701.2 7657 8461.6 11965 8021.5 13929 10867 9018.4 6410.2 5529.5 8218.4 7661.9 8695.7 11911 8107.8 13949 10983 9106.7 6287.5 1 1 1 1 1 1 1 1 1 1 4853 403 4273 4553 5385 5385 639;643 SRQPSGAGLCDISEGTVVPEDR 22 Phospho (STY) _SRQPS(ph)GAGLCDISEGTVVPEDR_ S(0.001)RQPS(0.999)GAGLCDISEGTVVPEDR S(-32.14)RQPS(32.14)GAGLCDIS(-58.35)EGT(-94.05)VVPEDR 0 0 1 1 Q5T5C0 Q5T5C0 Q5T5C0 STXBP5 Syntaxin-binding protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.751525878906 3 804.028332 2409.06317 33032.6696111729 1.4593 0.0011733 95006 76.387 95007 76.389 880.749884749994 61.649 0.50226 61.649 61.36 61.863 7.1054E-15 54 16 4 0.980297737957179 0.00157822007328361 0.0200785681407047 6.5648E-12 1 14440 191.11 149.85 4 20279000 4668.1 5628.8 5069.1 5045.5 11722 4801 12527 7766.2 7034.8 12826 4418.7 5314 5164.2 5212.2 11509 4884.5 12563 8061.7 7174.2 12257 1 1 1 1 1 1 1 1 1 1 4854 1185 4274 4554 5386 5386 2075 SRSCSESWR 9 Phospho (STY) _SRS(ph)CSESWR_ S(0.008)RS(0.97)CS(0.021)ESWR S(-20.65)RS(16.55)CS(-16.55)ES(-35.59)WR 0 0 1 1 I3L1I5 I3L1I5 I3L1I5 Putative uncharacterized protein LOC100996504 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.320678710938 2 617.737169 1233.45979 35885.1315108925 2.1296 0.0013156 185490 114.58 185490 114.58 732.318590596225 31.048 0.45057 31.048 30.819 31.269 0 25 14 2 0.985057434555821 0.000903747188480723 0.0403647896785005 0.00061863 1 6949 101.43 82.615 4 9447200 19081 6952.3 19132 8223.4 8485.9 19223 7477.1 10990 6725.5 3213.8 18056 6574.8 19130 8542.7 9225.1 18680 7638.9 11440 6668 3280.5 1 1 1 1 1 1 1 1 1 1 4855 29 4275 4555 5387 5387 50 SRSDIDVNAAAGAK 14 Phospho (STY) _S(ph)RSDIDVNAAAGAK_ S(0.68)RS(0.32)DIDVNAAAGAK S(3.26)RS(-3.26)DIDVNAAAGAK 0 0 1 1 O75122 O75122 O75122 CLASP2 CLIP-associating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.335205078125 3 485.559355 1453.65624 39441.9075975017 2.1131 0.001026 314640 152.77 314640 152.78 638.334227572683 46.269 1.2179 46.269 45.904 47.122 0 126 41 5 0.865255917273429 0.018157590669283 0.30204500091469 4.2015E-07 1 10676 158.08 120.36 2 125960000 59297 85078 61448 92911 48815 62581 59937 60324 96246 6722.9 56118 80415 61618 94433 50475 64067 61471 60799 93426 7726.6 1 1 1 1 1 1 1 1 1 1 4856 168 4276 4556 5388 5388 290 SRSDIDVNAAASAK 14 Phospho (STY) _S(ph)RSDIDVNAAASAK_ S(0.606)RS(0.394)DIDVNAAASAK S(1.87)RS(-1.87)DIDVNAAAS(-125.17)AK 0 0 1 1 Q7Z460 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.339538574219 3 495.562877 1483.6668 37603.7439630831 1.8587 0.00092111 308290 152.78 308290 152.78 648.338468069395 46.756 0.80094 46.756 46.406 47.207 7.1054E-15 96 27 6 0.993436599810828 0.0165075203106124 0.329525394022611 3.408E-11 1 10789 207.07 148.75 3 131180000 47213 62783 48842 65958 57355 47328 64175 57442 71732 9588.6 44682 59327 49205 67231 57805 48416 65204 57515 70457 10358 1 1 1 1 1 1 1 1 1 1 4857 1338 4277 4557 5389 5389 2416 SRSESDSEK 9 Phospho (STY) _SRS(ph)ESDSEK_ S(0.002)RS(0.996)ES(0.002)DSEK S(-27.51)RS(27.51)ES(-27.51)DS(-38.69)EK 0 0 1 1 Q9HCI7 Q9HCI7 Q9HCI7 MSL2 E3 ubiquitin-protein ligase MSL2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 781.877197265625 2 552.713882 1103.41321 35929.2424650777 2.0046 0.001108 414610 229.16 414620 229.16 781.877347686551 24.069 0.25967 24.069 23.964 24.224 3.5527E-15 20 8 3 0.953244499779345 0.00113321106988115 0.0384152211133197 0.0012109 1 5395 100.04 65.345 4 2802100 6099.3 2793.3 6274.4 2932.5 2505 5520 3964.2 4501.1 3616.3 1487.2 5772.1 2639.5 6264.5 3044.1 2784.9 5407.5 3955.6 4599.2 3583 1504.5 1 1 1 1 1 1 1 1 1 1 4858 1988 4278 4558 5390 5390 3611 SRSESETSTMAAK 13 Oxidation (M),Phospho (STY) _S(ph)RSESETSTM(ox)AAK_ SRSESETSTM(1)AAK S(0.47)RS(0.47)ES(0.06)ET(0.001)STMAAK SRSESETSTM(59.69)AAK S(0)RS(0)ES(-8.97)ET(-29.38)S(-40.45)T(-39.58)MAAK 0 1 1 1 Q96B23 Q96B23 Q96B23 C18orf25 Uncharacterized protein C18orf25 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.310607910156 3 494.204361 1479.59125 38547.2425455542 1.4499 0.00071653 309130 152.77 309130 152.77 646.977485024657 27.023 0.52423 27.023 26.826 27.35 0 47 17 4 0.95809782820753 0.00373935634461858 0.0221011556176639 0.034115 1 6011 59.689 46.262 6 26062000 9639.8 9928.5 11201 8731.6 8677.7 13048 12982 12862 9913.9 1361.8 9127.6 9372.3 11166 9107.7 9013.1 12887 12924 12949 9912.2 1580 1 1 1 1 1 1 1 1 1 1 4859 1652 4279 4559 5391 5391 195 3047;3048 SRSFDYNYR 9 2 Phospho (STY) _S(ph)RS(ph)FDYNYR_ S(1)RS(1)FDYNYR S(47.31)RS(41.19)FDY(-41.19)NY(-54)R 0 0 2 1 O75494 O75494 O75494 SRSF10 Serine/arginine-rich splicing factor 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.82763671875 2 684.244499 1366.47445 35430.8100921653 1.9848 0.0013581 167460 114.58 167460 114.58 798.826031509869 49.442 3.096 49.442 48.564 51.66 7.1054E-15 307 106 4 0.995252353985431 0.00531672155175301 0.0410169765792211 0.00045966 3 11483 109.72 79.916 6 102890000 90103 94715 88306 93160 90350 94303 100850 101830 93586 70167 85254 89465 89068 95767 91709 94701 101950 103970 92649 68427 3 3 3 3 3 3 3 3 3 3 4860 189 4280 4560 5392;5393;5394 5393 330;332 SRSFSGLIK 9 Phospho (STY) _SRS(ph)FSGLIK_ S(0.386)RS(0.61)FS(0.004)GLIK S(-1.99)RS(1.99)FS(-22.14)GLIK 0 0 1 1 Q14CB8 Q14CB8 Q14CB8 ARHGAP19 Rho GTPase-activating protein 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.93408203125 2 537.770806 1073.52706 36229.7005210261 2.393 0.0012869 426130 229.16 426140 229.16 766.933666596312 67.195 0.55452 67.195 66.891 67.446 0 46 18 3 0.787562237594736 0.00267577274271095 0.0954093198847848 0.010083 1 15754 80.312 24.886 3 32674000 32169 17993 33604 18028 10877 34998 12907 23278 19354 14380 30446 16997 33480 18782 12414 34203 13217 24237 18823 14079 1 1 1 1 1 1 1 1 1 1 4861 1039 4281 4561 5395 5395 1799 SRSGEGEVSGLMR 13 Oxidation (M),Phospho (STY) _SRS(ph)GEGEVSGLM(ox)R_ SRSGEGEVSGLM(1)R S(0.045)RS(0.95)GEGEVS(0.005)GLMR SRSGEGEVSGLM(47.55)R S(-13.24)RS(13.24)GEGEVS(-22.82)GLMR 0 1 1 1 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.898376464844 2 730.813605 1459.61266 34166.8335374977 0.9706 0.00070933 156790 114.58 156790 114.58 845.395296784156 34.364 0.44262 34.364 34.191 34.633 0 39 14 4 0.966030700688578 0.000915861058297389 0.0108664556487649 0.04543 1 7689 47.545 26.675 3 35285000 8811.7 7510 9676.8 8317.7 14321 10606 17408 11691 9277.3 4138.9 8341.4 7099.1 9756.9 8527.9 14295 10551 17349 11810 9498.8 4167.8 1 1 1 1 1 1 1 1 1 1 4862 942 4282 4562 5396 5396 126 1564 SRSGEGEVSGLMR 13 Phospho (STY) _SRS(ph)GEGEVSGLMR_ S(0.004)RS(0.996)GEGEVSGLMR S(-24.18)RS(24.18)GEGEVS(-122.67)GLMR 0 0 1 1 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 558.601318359375 3 482.213191 1443.61774 41643.1313549911 0.73487 0.00035437 158410 76.387 158410 76.388 558.600664826547 48.606 1.1537 48.606 48.184 49.338 7.1054E-15 166 39 6 0.936280379108049 0.0113721388591013 0.164263251344627 3.3493E-16 1 11234 234.57 194.95 3 425240000 19323 18871 18286 16103 30101 18625 32051 21533 18857 2255.3 18280 17811 18621 16743 29865 18596 32171 21554 19165 2622 1 1 1 1 1 1 1 1 1 1 4863 942 4282 4563 5397 5397 1564 SRSIDKDR 8 Phospho (STY) _SRS(ph)IDKDR_ S(0.012)RS(0.988)IDKDR S(-19.25)RS(19.25)IDKDR 0 0 1 2 Q8TF01 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.608795166016 3 352.832639 1055.47609 44384.9972735506 1.111 0.00039199 433000 152.78 433000 152.78 505.608284950121 26.17 0.60986 26.17 25.958 26.568 3.5527E-15 68 20 5 0.974739081498622 0.0055174286590855 0.0422533643674831 0.014793 1 5817 76.255 46.722 2 53914000 10325 16492 11077 15263 12790 12042 10584 13714 17997 1697.1 9772.6 15573 11128 15695 12854 12238 11082 13742 17443 1915.4 1 1 1 1 1 1 1 1 1 1 4864 1556 4283 4564 5398 5398 2861;2862 SRSIDKDR 8 2 Phospho (STY) _S(ph)RS(ph)IDKDR_ S(1)RS(1)IDKDR S(43.54)RS(43.54)IDKDR 0 0 2 2 Q8TF01 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 532.263732910156 3 379.488082 1135.44242 42667.1037258552 1.5992 0.00060687 402580 152.78 402580 152.78 532.263329708758 28.658 1.4485 28.658 27.981 29.429 0 99 49 3 0.989530057152696 0.00156681492851947 0.0278180294666343 0.046907 1 6311 43.544 12.358 1 9468600 10912 7954 8706.8 6530 7915.2 9628.7 7423.9 9131.5 9954.6 1980.5 10317 7505.8 8883.4 6841.5 8074.5 9510.5 7649.8 9238.5 9714.9 2076.3 1 1 1 1 1 1 1 1 1 1 4865 1556 4283 4565 5399 5399 2861;2862 SRSLGGAVGSVASGAR 16 Phospho (STY) _SRS(ph)LGGAVGSVASGAR_ S(0.387)RS(0.613)LGGAVGSVASGAR S(-2.01)RS(2.01)LGGAVGS(-114.99)VAS(-126.87)GAR 0 0 1 1 Q8NHG8 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.971130371094 3 504.582383 1510.72532 41226.3892125704 1.7414 0.00087866 151390 76.388 151390 76.389 580.970971225835 49.319 0.78169 49.319 49.053 49.835 0 51 26 3 0.920638606979814 0.00359258999254564 0.0699975480825133 2.1033E-07 1 11445 162.98 142.87 4 24186000 10773 8933.2 11334 10011 10501 12130 9361.8 10223 10235 3250.1 10196 8445 11368 10247 10691 12046 9608.1 10426 10061 3297 1 1 1 1 1 1 1 1 1 1 4866 1525 4284 4566 5400 5400 2805 SRSLPAFPTSSLLTQSQK 18 Phospho (STY) _SRS(ph)LPAFPTSSLLTQSQK_ S(0.274)RS(0.726)LPAFPTSSLLTQSQK S(-4.24)RS(4.24)LPAFPT(-36.73)S(-63.98)S(-82.59)LLT(-128.13)QS(-159.74)QK 0 0 1 1 Q99698 Q99698 Q99698 LYST Lysosomal-trafficking regulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.787231445313 3 676.6769 2027.00887 34949.7147319072 1.7172 0.001162 225770 152.77 225770 152.78 829.786241770792 84.257 0.67936 84.257 83.927 84.607 -1.4211E-14 96 23 5 0.745920779660875 0.0145007304473012 0.0937196392987125 2.9202E-11 1 19696 200.95 152.81 7 94030000 97772 5781.8 96698 8676.3 5640.2 95441 11245 44249 3540.8 23079 92513 5478.4 96327 10126 11172 91195 10966 47064 3820.5 22756 1 1 1 1 1 1 1 1 1 1 4867 1783 4285 4567 5401 5401 3287 SRSPATAK 8 Phospho (STY) _SRS(ph)PATAK_ S(0.038)RS(0.962)PATAK S(-13.99)RS(13.99)PAT(-49.63)AK 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 452.586608886719 3 299.811175 896.411696 46717.0013461209 0.43639 0.00013084 509570 152.78 509570 152.78 452.586505227385 25.484 0.54984 25.484 25.152 25.702 0 32 14 3 0.874514316078091 0.00598130462328363 0.066443237911768 0.00087144 1 5681 103.89 60.255 3 17222000 20489 17192 21140 16733 19558 20041 18812 20108 18414 4087.1 19391 16238 21229 17262 19930 19949 19174 20290 18186 4313.9 1 1 1 1 1 1 1 1 1 1 4868 2226 4286 4568 5402 5402 4092;4093 SRSPATAK 8 2 Phospho (STY) _S(ph)RS(ph)PATAK_ S(0.99)RS(0.572)PAT(0.438)AK S(17.43)RS(1.19)PAT(-1.19)AK 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.361022949219 2 489.19629 976.378026 37161.5882515546 1.8605 0.00091014 468450 229.16 468450 229.16 718.359574102373 27.22 1.1605 27.22 26.334 27.494 0 87 39 3 0.681971856470337 0.000785611314656743 0.00674477129507367 0.045573 1 5945 49.189 25.632 3 16316000 9350 9452.8 9604.1 8887.8 8152.8 9017.5 9349.5 9060.5 11047 4158.9 8848.4 8926.5 9640.6 9162.3 8377.7 9041.3 9506 9212 10828 4125.8 1 1 1 1 1 1 1 1 1 1 4869 2226 4286 4569 5403 5403 4092;4093 SRSPGPPQVDGTPTMSLERPPR 22 Phospho (STY) _S(ph)RSPGPPQVDGTPTMSLERPPR_ S(0.5)RS(0.5)PGPPQVDGTPTMSLERPPR S(0)RS(0)PGPPQVDGT(-76.45)PT(-87.96)MS(-87.74)LERPPR 0 0 1 2 Q6ZUJ8 Q6ZUJ8 Q6ZUJ8 PIK3AP1 Phosphoinositide 3-kinase adapter protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.838562011719 4 611.295341 2441.15226 37267.1108628051 1.956 0.0011957 93721 57.291 93723 57.292 668.838309803118 53.902 1.2958 53.902 53.177 54.473 0 117 43 5 0.722921873465358 0.00233643942514087 0.0256932184665504 0.0027135 2 12617 94.449 78.326 5 33959000 33522 12945 35011 13904 17698 35530 17906 20907 15489 6796.7 31726 12234 34957 14565 18983 34478 18151 21742 15386 6883.7 2 2 2 2 2 2 2 2 2 2 4870 1303 4287 4570 5404;5405 5405 2327;2328 SRSPGRPPK 9 Phospho (STY) _SRS(ph)PGRPPK_ S(0.102)RS(0.898)PGRPPK S(-9.43)RS(9.43)PGRPPK 0 0 1 2 Q14739 Q14739 Q14739 LBR Lamin-B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 507.288604736328 3 354.513241 1060.51789 44087.4423571589 1.1728 0.00041578 430940 152.78 430950 152.78 507.288906384063 24.671 1.1613 24.671 24.368 25.53 0 135 39 6 0.910534787328957 0.0110601014466123 0.0469889077617208 0.0075154 1 5486 87.026 54.895 2 296380000 22987 36323 22483 35764 28725 23482 28366 29359 39091 2496.6 21750 34310 22744 36558 28787 24164 29186 29297 38116 3030.3 1 1 1 1 1 1 1 1 1 1 4871 1026 4288 4571 5406 5406 1758;1759 SRSPGRPPK 9 2 Phospho (STY) _S(ph)RS(ph)PGRPPK_ S(1)RS(1)PGRPPK S(50.56)RS(50.56)PGRPPK 0 0 2 2 Q14739 Q14739 Q14739 LBR Lamin-B receptor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.9443359375 3 381.168684 1140.48422 42654.7800994401 0.83595 0.00031864 400810 152.78 400810 152.78 533.943923917252 26.685 2.2219 26.685 25.987 28.209 0 188 76 3 0.827762872486299 0.00299365479693049 0.0462121853999814 0.034672 2 5870 50.563 29.722 1 65384000 16024 23649 16497 23226 21323 18093 20536 21295 22518 4927.7 15164 22338 16642 23791 21345 18414 20996 21385 22134 5132.8 2 2 2 2 2 2 2 2 2 2 4872 1026 4288 4572 5407;5408 5407 1758;1759 SRSPIIHSPK 10 2 Phospho (STY) _S(ph)RSPIIHS(ph)PK_ S(0.778)RS(0.223)PIIHS(0.999)PK S(5.44)RS(-5.44)PIIHS(30.34)PK 0 0 2 1 O94913 O94913 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.639221191406 3 427.863261 1280.56795 40044.1025654969 1.3456 0.00057574 357070 152.78 357070 152.78 580.63903160465 39.72 1.3209 39.72 39.393 40.714 0 127 44 4 0.989447713415179 0.00798722161200437 0.0754761676374807 0.0071316 1 8990 81.594 51.536 3 129480000 18659 23504 19102 22947 22571 20083 24056 24898 25230 3167 17658 22200 19254 23549 22723 20324 24448 24884 24844 3558.4 1 1 1 1 1 1 1 1 1 1 4873 227 4289 4573 5409 5409 393;394 SRSPLAIR 8 2 Phospho (STY) _S(ph)RS(ph)PLAIR_ S(1)RS(1)PLAIR S(60.49)RS(60.49)PLAIR 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 644.822570800781 2 530.241031 1058.46751 38709.5842453719 1.5124 0.00080194 216090 114.58 216090 114.58 644.82253250802 46.534 3.0692 46.534 45.495 48.564 0 265 109 4 0.982417328260145 0.00105605328378555 0.00467110416125578 0.025343 2 10945 60.49 15.178 1 262340000 149230 156990 149120 151240 106940 159540 110930 144980 171260 13932 141210 148270 149650 155780 111130 159380 114380 146410 166430 16474 2 2 2 2 2 2 2 2 2 2 4874 2226 4290 4574 5410;5411 5411 4094;4095 SRSPLELEPEAK 12 Phospho (STY) _S(ph)RSPLELEPEAK_ S(0.5)RS(0.5)PLELEPEAK S(0)RS(0)PLELEPEAK 0 0 1 1 Q92466 Q92466 Q92466 DDB2 DNA damage-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 632.009033203125 3 479.232468 1434.67557 39777.9420919311 1.4152 0.00067821 318790 152.78 318790 152.78 632.007755575058 57.951 0.96078 57.951 57.675 58.636 0 106 32 5 0.960063302326437 0.00786219962065881 0.0793990293576153 8.4906E-05 1 13536 117.67 91.935 2 132930000 36178 24463 35122 21996 30088 38157 33047 32914 22303 3020.3 34230 23096 35370 22995 30862 37465 33203 33310 22462 3605.7 1 1 1 1 1 1 1 1 1 1 4875 1588 4291 4575 5412 5412 2918;2919 SRSPLGFYVHLK 12 Phospho (STY) _S(ph)RSPLGFYVHLK_ S(0.672)RS(0.328)PLGFYVHLK S(3.12)RS(-3.12)PLGFY(-52.47)VHLK 0 0 1 1 Q8IXT5 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.0302734375 3 495.253426 1482.73845 39362.9464926788 1.9489 0.0009652 308480 152.78 308480 152.78 648.36291494357 78.826 0.92947 78.826 78.461 79.39 1.4211E-14 89 31 4 0.991959270784708 0.00281209019659028 0.0363196596068709 0.00010633 1 18447 112.34 54.115 3 18594000 6508.4 10793 6982 9790 11180 6936.9 12515 10200 11075 10266 6160.4 10190 7057.1 10067 11115 7140.8 12635 10414 10989 9902.4 1 1 1 1 1 1 1 1 1 1 4876 1429 4292 4576 5413 5413 2608 SRSPLHPMSEIPR 13 Phospho (STY) _S(ph)RSPLHPMSEIPR_ S(0.5)RS(0.5)PLHPMSEIPR S(0)RS(0)PLHPMS(-53.15)EIPR 0 0 1 1 Q9NVW2 Q9NVW2 Q9NVW2 RLIM E3 ubiquitin-protein ligase RLIM MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.977172851563 3 529.58848 1585.74361 38875.7788774923 0.95616 0.00050637 144240 76.388 144240 76.388 605.975945424275 51.637 0.55186 51.637 51.283 51.835 0 43 18 4 0.981902065427528 0.000572109351297053 0.00236698835536348 0.008629 1 11988 76.378 38.002 3 10328000 8045.9 8727 8611.6 8169.8 8910.4 8878 9119.6 9235.5 9732.2 3804.6 7615.6 8240.9 8642.9 8433.8 9028.2 8878.9 9289.7 9364.7 9576.8 3796.2 1 1 1 1 1 1 1 1 1 1 4877 2050 4293 4577 5414 5414 3710;3711 SRSPLLNDR 9 2 Phospho (STY) _S(ph)RS(ph)PLLNDR_ S(1)RS(1)PLLNDR S(53.37)RS(53.37)PLLNDR 0 0 2 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.840026855469 2 609.25741 1216.50027 36357.0258876923 1.5696 0.00095631 188070 114.58 188070 114.58 723.839092616832 40.03 1.6307 40.03 39.48 41.111 0 103 55 3 0.695823980991935 0.000787071957802051 0.00896244497681212 0.036034 1 9081 53.367 32.438 1 23748000 30682 28114 26152 22749 23257 28031 25801 27507 26291 6697.2 29016 26528 26563 23770 23808 27867 26154 27813 25920 6942.9 1 1 1 1 1 1 1 1 1 1 4878 963 4294 4578 5415 5415 1630;1631 SRSPLLVTVVESDPRPQGQPR 21 Phospho (STY) _SRS(ph)PLLVTVVESDPRPQGQPR_ S(0.128)RS(0.87)PLLVT(0.001)VVES(0.001)DPRPQGQPR S(-8.32)RS(8.32)PLLVT(-28.81)VVES(-30.33)DPRPQGQPR 0 0 1 2 Q5VWN6 Q5VWN6 Q5VWN6 FAM208B Protein FAM208B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.803344726563 3 800.079467 2397.21657 33651.5536463105 1.7215 0.0013773 95476 76.388 95478 76.39 876.801609409178 66.66 0.80354 66.66 66.23 67.034 0 100 27 5 0.90810808464756 0.00466412351660328 0.110747745616782 0.019118 1 15617 70.027 42.417 4 33482000 10794 12822 10558 13954 15187 9196.2 15723 12787 15467 23857 10213 12119 10703 14182 15146 9520.1 15972 13406 15272 22760 1 1 1 1 1 1 1 1 1 1 4879 1211 4295 4579 5416 5416 2128 SRSPNRFDAHDPR 13 Phospho (STY) _SRS(ph)PNRFDAHDPR_ S(0.202)RS(0.798)PNRFDAHDPR S(-5.97)RS(5.97)PNRFDAHDPR 0 0 1 2 Q96T58 Q96T58 Q96T58 SPEN Msx2-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 466.726135253906 4 409.435043 1633.71107 45725.271532611 0.12062 4.9385E-05 139930 57.291 139930 57.291 466.725791181548 25.596 0.51672 25.596 25.356 25.873 -3.5527E-15 45 17 4 0.804574785918129 0.00544764512709886 0.0791129253789661 0.0070641 1 5703 81.346 40.545 2 15043000 6798.9 4779.3 6170 5899.8 8094.6 7107.1 9573.7 8152.6 5235.6 2168.2 6431.1 4521.2 6275.4 6008.7 8117.6 7087.1 9555.4 8202.5 5350 2230.3 1 1 1 1 1 1 1 1 1 1 4880 1756 4296 4580 5417 5417 3240 SRSPPPVSK 9 Phospho (STY) _SRS(ph)PPPVSK_ S(0.265)RS(0.735)PPPVSK S(-4.42)RS(4.42)PPPVS(-36.46)K 0 0 1 1 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 498.280975341797 3 345.505863 1033.49576 44465.4055819137 0.61824 0.00021361 442180 152.78 442180 152.78 498.281149739704 33.468 1.1942 33.468 32.911 34.105 0 89 41 3 0.800359962218136 0.00173188345566886 0.00765810618746196 0.026839 1 7438 51.726 36.064 3 30550000 13041 9795.3 15252 10870 17745 12086 18113 13599 11719 2139.8 12348 9259.4 15262 11115 17859 12083 18245 13647 11834 2329.7 1 1 1 1 1 1 1 1 1 1 4881 832 4297 4581 5418 5418 1338;1339 SRSPPPVSK 9 2 Phospho (STY) _S(ph)RS(ph)PPPVSK_ S(1)RS(1)PPPVSK S(80.74)RS(71.67)PPPVS(-71.67)K 0 0 2 1 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 524.936889648438 3 372.161307 1113.46209 42745.737780081 0.85656 0.00031878 410510 152.78 410510 152.78 524.936744796904 36.19 4.8826 36.19 34.832 39.715 0 510 171 6 0.997919743542478 0.0246579914545278 0.248790907678525 0.00019067 5 8277 123.68 98.823 3 417420000 217670 219250 224290 215160 210560 219280 217630 212120 226030 7298.2 206000 207100 225310 221230 214600 219530 221420 213270 222670 11781 5 5 5 5 5 5 5 5 5 5 4882 832 4297 4582 5419;5420;5421;5422;5423 5421 1338;1339 SRSPPRPK 8 Phospho (STY) _SRS(ph)PPRPK_ S(0.13)RS(0.87)PPRPK S(-8.27)RS(8.27)PPRPK 0 0 1 2 Q8WUQ7 Q8WUQ7 Q8WUQ7 CACTIN Cactin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 488.281677246094 3 335.506086 1003.49643 44893.2260696071 1.0171 0.00034124 455360 152.78 455360 152.78 488.281306439364 25.754 0.6021 25.754 25.299 25.901 3.5527E-15 64 20 4 0.985625033604282 0.0114325417467494 0.086609276782048 0.048093 1 5733 50.607 27.178 2 44978000 29647 22935 32532 22279 19107 33939 20412 26147 25471 3013.5 28065 21662 32430 23103 20206 33406 20853 26620 24917 3442.7 1 1 1 1 1 1 1 1 1 1 4883 1567 4298 4583 5424 5424 2879 SRSPQAFR 8 Phospho (STY) _SRS(ph)PQAFR_ S(0.053)RS(0.947)PQAFR S(-12.52)RS(12.52)PQAFR 0 0 1 1 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.319458007813 2 514.737298 1027.46004 39002.4243184538 1.6895 0.00086967 222600 114.58 222600 114.58 629.318534831971 29.519 0.32524 29.519 29.31 29.636 0 25 10 3 0.985849642656873 0.00141510939827944 0.0371501972788103 0.038172 1 6574 54.343 13.616 2 15943000 19461 16717 19589 16628 18330 20553 17398 17971 16064 3418.4 18415 15791 19700 17142 18661 20401 17718 18230 15906 3634.7 1 1 1 1 1 1 1 1 1 1 4884 1353 4299 4584 5425 5425 2458 SRSPSSPELNNK 12 2 Phospho (STY) _S(ph)RS(ph)PSSPELNNK_ S(0.999)RS(0.995)PS(0.006)SPELNNK S(31.67)RS(22.69)PS(-22.69)S(-48.6)PELNNK 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.309020996094 3 492.535761 1474.58545 39167.943874203 1.7816 0.00087751 310180 152.78 310180 152.78 645.312194026684 39.905 1.4561 39.905 38.754 40.21 0 123 49 3 0.566389506450253 0.00136454150940094 0.0357782908269089 7.6766E-05 1 8912 122.13 100.08 6 11607000 13219 13718 14065 13010 16225 15666 16872 14673 13226 3575.6 12511 12955 14142 13444 16343 15578 17043 14864 13205 3706.5 1 1 1 1 1 1 1 1 1 1 4885 2226 4300 4585 5426 5426 4096;4097 SRSPTIK 7 Phospho (STY) _SRS(ph)PTIK_ S(0.397)RS(0.599)PT(0.004)IK S(-1.78)RS(1.78)PT(-21.55)IK 0 0 1 1 Q8TF01 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 442.923431396484 3 290.147787 867.421532 45872.8758310124 0.97169 0.00028193 526550 152.78 526550 152.78 442.924073857026 33.586 0.61497 33.586 33.407 34.022 -7.1054E-15 40 20 3 0.778214996791872 0.00259597250321753 0.0319739232697045 0.032727 1 7529 48.602 26.022 3 14195000 24855 25931 22162 27084 23753 21699 21142 22975 25461 1970.5 23510 24502 22485 27652 23978 22010 21765 23055 24939 2387.2 1 1 1 1 1 1 1 1 1 1 4886 1556 4301 4586 5427 5427 2863 SRSPVDLR 8 Phospho (STY) _SRS(ph)PVDLR_ S(0.432)RS(0.568)PVDLR S(-1.19)RS(1.19)PVDLR 0 0 1 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 413.553039550781 3 337.165729 1008.47536 48050.3783247209 0.059512 2.0065E-05 226560 76.388 226560 76.388 413.553527549124 33.83 0.48716 33.83 33.618 34.105 0 36 16 3 0.986515376556105 0.00178655859673341 0.0214126622263999 0.0071765 1 7568 82.171 42.992 2 12516000 12444 12142 12754 12356 12895 12563 14026 13178 12652 1824.3 11776 11471 12829 12677 13092 12595 14185 13249 12542 2022.8 1 1 1 1 1 1 1 1 1 1 4887 963 4302 4587 5428 5428 1632 SRSPVDLR 8 Phospho (STY) _SRS(ph)PVDLR_ S(0.178)RS(0.822)PVDLR S(-6.66)RS(6.66)PVDLR 0 0 1 1 Q13523 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.827453613281 2 505.244956 1008.47536 NaN NaN NaN NaN NaN NaN NaN NaN 33.906 1 33.906 33.406 34.406 0 NaN NaN NaN 0.02646 1 7595 72.006 30.579 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4888 963 4302 4587 5429 5429 1632 SRSSDIVSSVR 11 Phospho (STY) _S(ph)RSSDIVSSVR_ S(0.62)RS(0.372)S(0.008)DIVSSVR S(2.22)RS(-2.22)S(-18.79)DIVS(-77.99)S(-101.24)VR 0 0 1 1 Q14C86 Q14C86 Q14C86 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 501.258392333984 3 424.869641 1271.58709 44098.5323842757 1.0374 0.00044074 179790 76.388 179790 76.388 501.257532396662 38.681 0.64031 38.681 38.411 39.052 0 76 21 5 0.877345854427011 0.00500986074072645 0.0709965981359165 4.279E-07 1 8746 156.88 120.89 5 99392000 16417 20925 16333 20531 15324 16673 16603 17660 22730 4632.5 15534 19765 16441 21042 15634 16906 17007 17816 22168 4770.8 1 1 1 1 1 1 1 1 1 1 4889 1038 4303 4588 5430 5430 1797;1798 SRSSSSPPPK 10 2 Phospho (STY) _SRSS(ph)SS(ph)PPPK_ S(0.211)RS(0.334)S(0.423)S(0.066)S(0.965)PPPK S(-3.04)RS(-1.04)S(1.04)S(-10.84)S(14.7)PPPK 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.93603515625 3 397.159854 1188.45773 41960.8710068674 1.6054 0.00063761 384670 152.78 384670 152.78 549.935435723981 27.539 1.9526 27.539 26.771 28.723 0 132 67 3 0.875309367936316 0.00155079879098448 0.0202674227188541 0.0097809 2 6227 73.927 57.703 10 11407000 15567 11406 13299 11699 11582 14753 12000 12340 13677 4326.8 14722 10777 13501 12044 11862 14630 12241 12602 13424 4359.8 2 2 2 2 2 2 2 2 2 2 4890 2226 4304 4589 5431;5432 5432 4098;4099;4100 SRSSSSPPPKQK 12 2 Phospho (STY) _SRSS(ph)S(ph)SPPPKQK_ S(0.069)RS(0.452)S(0.502)S(0.57)S(0.407)PPPKQK S(-9.32)RS(-0.54)S(0.54)S(1.6)S(-1.6)PPPKQK 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.042175292969 3 482.544368 1444.61127 37251.1698462289 2.4427 0.0011787 474900 229.16 474910 229.16 711.706965731858 28.806 1.5404 28.806 28.209 29.749 3.5527E-15 130 52 3 0.717983531081306 0.00111918471366325 0.0193663140353189 0.045075 2 6523 46.408 27.951 10 20206000 17909 16015 18846 16811 15365 18162 16112 16473 18869 4979.4 16950 15133 18882 17234 15811 18133 16440 16739 18501 5070 2 2 2 2 2 2 2 2 2 2 4891 2226 4305 4590 5433;5434 5434 4098;4099;4100 SRSTTELDDYSTNK 14 Phospho (STY) _S(ph)RSTTELDDYSTNK_ S(0.493)RS(0.493)T(0.011)T(0.002)ELDDYSTNK S(0)RS(0)T(-16.57)T(-23.46)ELDDY(-73.31)S(-86.63)T(-104.28)NK 0 0 1 1 Q8WWI1 Q8WWI1 Q8WWI1 LMO7 LIM domain only protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.016418457031 3 566.240239 1695.69889 37446.060526203 1.1098 0.00062842 269810 152.78 269810 152.78 719.015967285744 47.594 0.45011 47.594 47.412 47.862 0 32 15 3 0.960561980732782 0.00129689004604643 0.00823506978721746 8.0068E-07 1 11013 141.83 108.52 7 29970000 37549 14758 36002 15639 22474 39868 24723 24406 14033 7515.3 35525 13946 36179 16393 23627 38701 24766 25307 14300 7641.4 1 1 1 1 1 1 1 1 1 1 4892 1575 4306 4591 5435 5435 2890;2891 SRSVPVSFYEIR 12 Phospho (STY) _SRS(ph)VPVSFYEIR_ S(0.03)RS(0.97)VPVSFYEIR S(-15.13)RS(15.13)VPVS(-61.34)FY(-90.65)EIR 0 0 1 1 I3L1I5 I3L1I5 I3L1I5 Putative uncharacterized protein LOC100996504 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.971557617188 3 507.248341 1518.72319 40537.3880157319 1.3908 0.00070548 150590 76.388 150590 76.389 583.636315221776 71.386 0.74751 71.386 71.032 71.779 0 84 25 4 0.947254922831924 0.00311758265990753 0.0321560170870564 0.00014275 1 16712 103.28 76.25 4 78371000 7990.6 3312.9 8117.1 3200.2 4620.2 8111.4 4353.6 5197 2574.8 3639.1 7561.6 3128.9 8122.9 3371.6 4889.6 7881.6 4395.7 5435.5 2616 3546.9 1 1 1 1 1 1 1 1 1 1 4893 29 4307 4592 5436 5436 51 SRSWEDSPER 10 Phospho (STY) _SRS(ph)WEDSPER_ S(0.004)RS(0.996)WEDSPER S(-23.75)RS(23.75)WEDS(-40.57)PER 0 0 1 1 Q9UDY2 Q9UDY2 Q9UDY2 TJP2 Tight junction protein ZO-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.349548339844 2 664.766981 1327.51941 37138.7035341006 1.2488 0.00083018 172360 114.58 172370 114.58 779.349027375418 35.074 0.44365 35.074 34.887 35.33 0 31 14 3 0.961850604202366 0.000509913709073603 0.00491507114203869 2.7335E-06 1 7886 147.96 112.31 3 12488000 10571 17570 8825.1 18054 11592 8775.3 10255 12364 18683 6125.1 9996.3 16601 9018.1 18359 11589 9266.6 10734 12448 18077 6053.7 1 1 1 1 1 1 1 1 1 1 4894 2134 4308 4593 5437 5437 3839 SRSWPASPR 9 Phospho (STY) _SRS(ph)WPASPR_ S(0.054)RS(0.946)WPASPR S(-12.46)RS(12.46)WPAS(-76.78)PR 0 0 1 1 Q86YD1 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 451.560882568359 3 375.172995 1122.49716 46494.6854288004 0.83333 0.00031264 203610 76.388 203610 76.388 451.560652111732 38.893 0.75486 38.893 38.638 39.393 0 54 25 3 0.852941550447559 0.00217047330262106 0.0511869771893505 0.00026996 1 8814 114.02 77.044 3 15204000 14878 14034 13871 16836 13377 14378 12495 14882 14114 1747.6 14075 13274 14017 17076 13593 14531 12805 14961 13857 1990 1 1 1 1 1 1 1 1 1 1 4895 1401 4309 4594 5438 5438 2542 SRSWTSPK 8 Phospho (STY) _S(ph)RSWTSPK_ S(0.702)RS(0.298)WTSPK S(3.72)RS(-3.72)WT(-38.97)S(-65.38)PK 0 0 1 1 O75494 O75494 O75494 SRSF10 Serine/arginine-rich splicing factor 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 496.265777587891 3 343.490213 1027.44881 45121.4750733251 1.0039 0.00034483 444770 152.78 444770 152.78 496.265370074854 43.999 0.47095 43.999 43.757 44.228 0 31 15 3 0.631236963199753 0.00144124396044023 0.0256550816981319 0.0030765 1 10095 94.767 70.424 4 13038000 20188 12507 20313 15247 15047 16761 12451 14550 14945 1228.5 19103 11830 20378 15512 15546 16707 12867 14718 14641 1493.5 1 1 1 1 1 1 1 1 1 1 4896 189 4310 4595 5439 5439 333 SRTASLTSAASVDGNR 16 2 Phospho (STY) _SRT(ph)AS(ph)LTSAASVDGNR_ S(0.407)RT(0.593)AS(0.999)LT(0.001)SAASVDGNR S(-1.63)RT(1.63)AS(31.54)LT(-31.54)S(-49.84)AAS(-73.99)VDGNR 0 0 2 1 Q9UN36 Q9UN36 Q9UN36 NDRG2 Protein NDRG2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.304565429688 3 584.9153 1751.72407 39897.8655592036 2.0049 0.0011727 130600 76.387 130600 76.389 661.302374043158 42.016 1.2285 42.016 41.339 42.568 7.1054E-15 98 42 3 0.87002817194803 0.00105059442096763 0.017026042678697 0.00032712 1 9624 103.84 92.32 15 12365000 11055 9768.2 12451 10921 10231 15853 9599.8 11564 12059 11660 10467 9234.3 12429 11222 10507 15638 9869.4 12117 11795 11247 1 1 1 1 1 1 1 1 1 1 4897 2201 4311 4596 5440 5440 3988;4813 SRTGSESSQTGTSTTSSR 18 Phospho (STY) _S(ph)RTGSESSQTGTSTTSSR_ S(0.333)RT(0.333)GS(0.333)ESSQTGTSTTSSR S(0)RT(0)GS(0)ES(-35.71)S(-56.74)QT(-81.33)GT(-99.09)S(-105.53)T(-109.6)T(-112.46)S(-113.61)S(-113.61)R 0 0 1 1 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.660339355469 3 632.935879 1895.78581 37578.0706561947 2.0884 0.0013218 120690 76.388 120690 76.389 709.658314082546 20.433 0.32134 20.433 20.201 20.522 0 24 10 4 0.979261476754838 0.00607831453542233 0.0439228650323362 4.5548E-05 1 4637 114.04 102.01 12 1978400 541.18 0 899.05 210.3 458.52 1196.8 315.02 148.89 0 378.38 513.43 0 879.05 218.95 488.99 1143.2 318.92 201.35 0 359.74 1 0 1 1 1 1 1 1 0 1 4898 468 4312 4597 5441 5441 772;773;774;4428 SRTLEGK 7 Phospho (STY) _S(ph)RTLEGK_ S(0.508)RT(0.492)LEGK S(0.14)RT(-0.14)LEGK 0 0 1 1 P18615 P18615 P18615 NELFE Negative elongation factor E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 443.582794189453 3 290.807542 869.400797 47182.5630869197 0.08401 2.4431E-05 525350 152.78 525350 152.78 443.582770446611 35.707 0.46193 35.707 35.418 35.88 0 46 15 4 0.793252764605055 0.00610552981137501 0.0882126982827061 0.02204 1 8018 57.532 19.941 2 63612000 69598 51743 69275 52034 58850 61207 64411 58304 54271 2121.7 65856 48882 69658 53557 60406 60909 65021 58659 53979 3347.2 1 1 1 1 1 1 1 1 1 1 4899 429 4313 4598 5442 5442 699 SRTPLLPR 8 2 Phospho (STY) _S(ph)RT(ph)PLLPR_ S(1)RT(1)PLLPR S(71.9)RT(71.9)PLLPR 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.838928222656 2 550.256682 1098.49881 38338.3334285361 1.7786 0.00097866 208230 114.58 208230 114.58 664.837875678334 50.057 2.9298 50.057 49.053 51.983 0 263 100 4 0.996433385549119 0.00766814764309271 0.101240596232808 0.015332 1 11655 71.896 21.807 1 167790000 78712 73543 77694 75304 40670 76752 44612 62821 82599 6755.6 74478 69483 77846 77235 43550 76706 46263 63757 79890 7815.1 1 1 1 1 1 1 1 1 1 1 4900 2226 4314 4599 5443 5443 4101;4830 SRTPPAIR 8 2 Phospho (STY) _S(ph)RT(ph)PPAIR_ S(1)RT(1)PPAIR S(49.78)RT(49.78)PPAIR 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.815551757813 2 529.233206 1056.45186 39236.1171462094 1.5424 0.00081629 216500 114.58 216510 114.58 643.814460596593 33.863 2.6229 33.863 32.413 35.036 7.1054E-15 209 90 4 0.876674063155333 0.00524604195077863 0.188907445570192 0.044614 2 7556 49.777 29.523 1 51729000 57830 55739 60936 54756 42223 58180 45233 51956 56296 9201.6 54734 52650 60957 56336 44006 58103 46201 52634 55078 9866.8 2 2 2 2 2 2 2 2 2 2 4901 2226 4315 4600 5444;5445 5445 4102;4831 SRTPPSAPSQSR 12 Phospho (STY) _S(ph)RTPPSAPSQSR_ S(0.589)RT(0.411)PPSAPSQSR S(1.56)RT(-1.56)PPS(-39.77)APS(-52.88)QS(-52.84)R 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 527.265319824219 3 450.876907 1349.60889 42756.5392625045 1.1519 0.00051939 169420 76.388 169420 76.388 527.26483113708 24.38 1.5951 24.38 23.353 24.948 0 154 54 6 0.968666273990858 0.00680924682441004 0.12037460546142 0.021053 1 5376 57.703 30.374 5 158980000 6797.2 2994.2 6714.5 2855.6 3123.7 7127.8 3062.6 4313.8 3731 3542.7 6431.6 2827.7 6721.8 3009.1 3381.7 6925.3 3138.7 4542.9 3653 3435.8 1 1 1 1 1 1 1 1 1 1 4902 2226 4316 4601 5446 5446 4035;4820 SRTPSASNDDQQE 13 Phospho (STY) _SRTPS(ph)ASNDDQQE_ SRT(0.001)PS(0.959)AS(0.04)NDDQQE S(-43.95)RT(-30.5)PS(13.76)AS(-13.76)NDDQQE 0 0 1 1 O43765 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 872.374328613281 2 757.791381 1513.56821 33961.2226757529 1.8367 0.0013918 151200 114.58 151210 114.58 872.373472879871 23.586 0.40513 23.586 23.411 23.816 0 28 13 3 0.982718252336978 0.00163989877539925 0.0389570541765905 3.5801E-07 1 5288 162.46 146.37 4 2781800 2550 1367.2 2479.6 1097.8 262.94 2304.2 471.77 1486.6 1253.8 571.02 2412.7 1290 2474.1 1163 401.4 2246.6 491.6 1540.1 1203.9 572.09 1 1 1 1 1 1 1 1 1 1 4903 127 4317 4602 5447 5447 221 SRTSPAPWK 9 Phospho (STY) _SRTS(ph)PAPWK_ S(0.103)RT(0.053)S(0.845)PAPWK S(-9.16)RT(-12.06)S(9.16)PAPWK 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.285766601563 3 370.509496 1108.50666 43496.1701759393 1.6732 0.00061995 412340 152.78 412340 152.78 523.284718544163 49.595 0.81663 49.595 49.283 50.099 0 91 27 5 0.987938223108441 0.003239058005815 0.0193352956703468 0.0026396 1 11473 93.766 57.241 3 104420000 13946 15588 14991 15760 11663 14463 13242 12554 15359 1555 13201 14727 14997 16151 12056 14534 13461 12714 15065 1754.8 1 1 1 1 1 1 1 1 1 1 4904 2226 4318 4603 5448 5448 4103;4104;4832 SRTSPAPWK 9 2 Phospho (STY) _S(ph)RTS(ph)PAPWK_ S(0.658)RT(0.345)S(0.997)PAPWK S(2.82)RT(-2.82)S(23.71)PAPWK 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.408813476563 2 595.243771 1188.47299 34638.8410644544 2.2046 0.0013123 384990 229.16 384990 229.16 824.406540519895 56.071 1.8854 56.071 55.449 57.334 7.1054E-15 175 63 5 0.779916495192195 0.00309622945331738 0.13076019340638 0.0097825 1 13194 79.886 51.589 3 150610000 42933 44213 45440 43958 30616 45051 30279 38853 52057 9836.2 40635 41765 45429 45168 31960 45049 31434 39509 50441 10161 1 1 1 1 1 1 1 1 1 1 4905 2226 4318 4604 5449 5449 4103;4104;4832 SRTSPAPWK 9 2 Phospho (STY) _S(ph)RT(ph)SPAPWK_ S(0.919)RT(0.859)S(0.222)PAPWK S(9.83)RT(7.41)S(-7.41)PAPWK 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.940063476563 3 397.16494 1188.47299 42002.0320427336 1.327 0.00052704 384660 152.77 384660 152.78 549.939816868448 56.081 2.4553 56.081 55.335 57.79 0 264 83 5 0.927395967455642 0.0011573711738781 0.016997608368934 0.043167 1 13397 60.301 29.073 3 276360000 8764.3 8314.2 9186.3 9498.5 6970.1 8606.5 6727.9 8209.3 10057 2761.2 8294.8 7860.9 9198.2 9666.1 7203.8 8666.8 6951.2 8333.1 9782 2790 1 1 1 1 1 1 1 1 1 1 4906 2226 4318 4604 5450 5450 4103;4104;4832 SRTSPITR 8 Phospho (STY) _SRTS(ph)PITR_ S(0.018)RT(0.278)S(0.694)PIT(0.009)R S(-15.8)RT(-3.97)S(3.97)PIT(-18.67)R 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.827331542969 2 499.244956 996.475359 38813.7779062385 1.3459 0.00067192 229510 114.58 229510 114.58 613.826574402849 25.246 0.52305 25.246 24.89 25.413 0 36 17 4 0.801919205514628 0.00598099439624327 0.073518182087876 0.024974 1 5644 61.363 41.876 4 26281000 12309 16215 13093 13888 11832 12203 12368 14372 17093 3625.3 11651 15305 13124 14375 12093 12341 12694 14441 16666 3746.3 1 1 1 1 1 1 1 1 1 1 4907 2226 4319 4605 5451 5451 4105 SRTSPVTR 8 Phospho (STY) _SRTS(ph)PVTR_ S(0.012)RT(0.196)S(0.451)PVT(0.34)R S(-15.66)RT(-3.62)S(1.23)PVT(-1.23)R 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 606.819885253906 2 492.237131 982.459709 40518.5706080195 1.9555 0.00096256 232780 114.58 232780 114.58 606.818814364894 22.298 0.34811 22.298 22.14 22.488 -3.5527E-15 34 11 4 0.981290025309328 0.00985778207833671 0.146856678687342 0.049043 1 5012 48.561 22.734 4 25129000 6901.6 9268.4 7407 9109.7 6967.6 7682.8 6651 8643.8 10570 3810.7 6532.5 8754.6 7423.4 9340.3 7096 7783.8 6892.7 8747.9 10263 3788.3 1 1 1 1 1 1 1 1 1 1 4908 2226 4320 4606 5452 5452 4106 SRVFDLQFSTDSPR 14 Phospho (STY) _S(ph)RVFDLQFSTDSPR_ S(1)RVFDLQFSTDSPR S(78.87)RVFDLQFS(-78.87)T(-81.81)DS(-95.67)PR 0 0 1 1 Q15003 Q15003 Q15003 NCAPH Condensin complex subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.656372070313 3 578.933081 1733.77741 38445.6696798438 2.0921 0.0012112 131950 76.388 131950 76.389 655.320752161115 79.198 0.63272 79.198 78.956 79.589 0 70 21 4 0.843618538414435 0.00208453752437515 0.0312361684540889 5.2301E-05 1 18559 128.29 118.37 4 17651000 18338 15311 16198 14081 13838 17676 16282 17457 13188 5473.5 17345 14457 16409 14590 14213 17565 16371 17684 13144 5558 1 1 1 1 1 1 1 1 1 1 4909 1041 4321 4607 5453 5453 1801 SRVSVSPGR 9 2 Phospho (STY) _SRVS(ph)VS(ph)PGR_ S(0.018)RVS(0.983)VS(0.998)PGR S(-17.63)RVS(17.63)VS(28.05)PGR 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.315551757813 2 552.733571 1103.45259 37672.1557043985 2.2028 0.0012176 207300 114.58 207300 114.58 667.314359858163 30.216 2.5681 30.216 29.548 32.117 0 177 86 3 0.936828888996134 0.00175210579710373 0.0902920301846986 0.046557 1 6852 47.606 34.098 3 21597000 16143 13012 16119 11548 12838 15095 12806 12616 12993 7758.7 15275 12284 16192 12003 13222 14956 13042 12985 12812 7597.7 1 1 1 1 1 1 1 1 1 1 4910 1436 4322 4608 5454 5454 2637;2638 SSADKIGEVSSPK 13 Phospho (STY) _SSADKIGEVS(ph)SPK_ SSADKIGEVS(0.5)S(0.5)PK S(-38.71)S(-38.71)ADKIGEVS(0)S(0)PK 0 0 1 1 P35251 P35251 P35251 RFC1 Replication factor C subunit 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.381164550781 3 462.216707 1383.62829 NaN NaN NaN NaN NaN NaN NaN NaN 50.194 1 50.194 49.694 50.694 0 NaN NaN NaN 0.044246 1 11661 56.407 31.614 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4911 544 4323 4609 5455 5455 879;880 SSAFSPLGGCTPAECFCQTDIGGDR 25 Phospho (STY) _SSAFS(ph)PLGGCTPAECFCQTDIGGDR_ S(0.005)S(0.005)AFS(0.991)PLGGCTPAECFCQTDIGGDR S(-23.24)S(-23.24)AFS(23.24)PLGGCT(-50)PAECFCQT(-141.79)DIGGDR 0 0 1 0 Q9UKA4 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1000.75775146484 3 924.036282 2769.08702 30703.3692632593 1.3002 0.0012015 82667 76.387 82668 76.388 1000.75749149648 86.011 0.37345 86.011 85.786 86.159 0 34 12 4 0.956767509817429 0.00228351895836265 0.0680276242807587 5.4451E-12 1 20067 185.68 165.44 5 8440000 2786.3 2319 3216.9 2259.7 2686.9 3129.2 2935.6 3311.7 2368.8 20275 2638.2 2190.4 3208.4 2337.8 2761 3138.2 2960.8 3925.8 2361.3 19168 1 1 1 1 1 1 1 1 1 1 4912 2169 4324 4610 5456 5456 3906 SSASAPDVDDPEAFPALA 18 Unmodified _SSASAPDVDDPEAFPALA_ 0 0 0 0 Q8NC51 Q8NC51 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 994.988708496094 2 880.404689 1758.79482 30932.5125639811 1.6294 0.0014345 130150 114.58 130150 114.58 995.487580099131 86.627 0.72112 86.627 86.307 87.028 0 95 24 5 0.796071970386884 0.00107578762306121 0.032467785588245 2.3626E-07 1 20174 169.58 154.04 1 106340000 9108.8 6810.6 8688.1 7286.6 9149.2 8515.1 9163 9655.6 7233.5 27514 8617.7 6436.4 8778.3 7472.4 9255.8 8546.4 9273.6 10470 7219.1 26131 1 1 1 1 1 1 1 1 1 1 4913 1493 4325 4611 5457 5457 SSATSGDIWPGLSAYDNSPR 20 Phospho (STY) _SSATSGDIWPGLSAYDNS(ph)PR_ SSATSGDIWPGLSAYDNS(1)PR S(-190.28)S(-190.28)AT(-175.31)S(-167.4)GDIWPGLS(-56.13)AY(-62.48)DNS(56.13)PR 0 0 1 0 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1196.05139160156 2 1080.96532 2159.91609 28698.0174177127 1.4423 0.0015591 106000 114.58 106000 114.58 1196.04764347299 86.758 0.80674 86.758 86.335 87.142 0 82 27 4 0.959455502146804 0.000870737179605139 0.0411561953986541 3.6682E-16 1 20194 231.52 202.88 7 20371000 5285.2 3456.1 4524.4 3149.2 2776.5 6353.2 3138.7 4021.5 3524.5 25348 4998.3 3263.1 4578.8 3303.7 2926.3 6243.6 3188.1 4888 3461.2 23961 1 1 1 1 1 1 1 1 1 1 4914 2072 4326 4612 5458 5458 3752 SSCVSLGETAASYYGSCK 18 Phospho (STY) _S(ph)SCVSLGETAASYYGSCK_ S(0.499)S(0.499)CVS(0.001)LGETAASYYGSCK S(0)S(0)CVS(-26.49)LGET(-94.39)AAS(-141.22)Y(-159.45)Y(-167.19)GS(-178.07)CK 0 0 1 0 Q13370 Q13370 Q13370 PDE3B cGMP-inhibited 3,5-cyclic phosphodiesterase B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.71142578125 3 669.600563 2005.77986 34972.3536905952 2.6118 0.0017488 228160 152.77 228160 152.78 822.374215246709 75.344 0.42528 75.344 75.119 75.545 0 44 14 4 0.978786671087002 0.00282356867733377 0.047666542307473 7.2755E-11 1 17675 182.78 165.5 8 9972900 8363.7 5373.3 7736.2 5993.4 7096.2 6991 6242.8 6771.9 6340.6 20488 7911.9 5079.5 7816.5 6132.1 7227 6998.7 6398.3 7418.5 6252.1 19449 1 1 1 1 1 1 1 1 1 1 4915 947 4327 4613 5459 5459 1576;1577 SSDEDAAGEPK 11 Phospho (STY) _S(ph)SDEDAAGEPK_ S(0.988)S(0.012)DEDAAGEPK S(19.03)S(-19.03)DEDAAGEPK 0 0 1 0 Q9BUI4 Q9BUI4 Q9BUI4 POLR3C DNA-directed RNA polymerase III subunit RPC3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.380676269531 2 593.218998 1184.42344 34639.4575249072 1.734 0.0010286 386300 229.16 386310 229.16 822.382183964071 34.629 0.84052 34.629 34.459 35.299 7.1054E-15 67 28 3 0.956787188613764 0.000939744675449029 0.00780880921236652 1.1519E-14 1 7760 215.14 178.72 2 20305000 26051 20346 26525 19454 18892 25797 18130 21163 19573 3329.5 24653 19215 26587 20131 19613 25523 18531 21508 19251 3624.9 1 1 1 1 1 1 1 1 1 1 4916 1834 4328 4614 5460 5460 3356;3357 SSDIVSSVR 9 Phospho (STY) _S(ph)SDIVSSVR_ S(0.942)S(0.058)DIVSSVR S(12.1)S(-12.1)DIVS(-41.54)S(-60.19)VR 0 0 1 0 Q14C86 Q14C86 Q14C86 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.816223144531 2 515.234254 1028.45395 36628.7826082975 0.93793 0.00048325 222390 114.58 222390 114.58 629.815817847906 48.518 0.66861 48.518 48.184 48.853 0 33 22 2 0.955543667922701 0.000439923552275195 0.00473804901881365 0.00056346 1 11288 108.1 82 4 77569000 25284 24665 26508 22966 24576 25296 22283 26936 26385 6484.6 23930 23290 26594 23722 25025 25284 22905 27151 25861 6729.4 1 1 1 1 1 1 1 1 1 1 4917 1038 4329 4615 5461 5461 1798 SSDKLNLVTK 10 Phospho (STY) _S(ph)SDKLNLVTK_ S(0.973)S(0.027)DKLNLVTK S(15.5)S(-15.5)DKLNLVT(-89.83)K 0 0 1 1 Q8TBZ3 Q8TBZ3 Q8TBZ3 WDR20 WD repeat-containing protein 20 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.0341796875 3 395.535599 1183.58497 39950.1094590914 2.0778 0.00082184 579370 229.16 579380 229.16 624.698633649248 67.492 0.644 67.492 67.18 67.824 0 65 21 4 0.992704448463592 0.00415139913686436 0.148627772520577 0.00018965 1 15823 112.17 77.285 3 37251000 12232 14189 11211 15243 10878 11618 12236 13658 16573 4734.5 11571 13410 11346 15528 11082 11842 12509 13763 16168 4774.2 1 1 1 1 1 1 1 1 1 1 4918 1539 4330 4616 5462 5462 2827 SSDQPLTVPVSPK 13 Phospho (STY) _SSDQPLTVPVS(ph)PK_ SSDQPLTVPVS(1)PK S(-71.45)S(-71.45)DQPLT(-42.14)VPVS(42.14)PK 0 0 1 0 Q9ULW0 Q9ULW0 Q9ULW0 TPX2 Targeting protein for Xklp2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 632.011779785156 3 478.900718 1433.68033 39364.4783367643 1.6295 0.00078038 319010 152.78 319010 152.78 631.676405482821 66.051 0.74259 66.051 65.717 66.46 0 98 24 6 0.920365172017021 0.00887686111725012 0.14777061483705 0.00074892 1 15482 99.663 77.085 4 100420000 15132 17742 13727 18246 13333 14097 13830 15183 18490 2964 14313 16763 13899 18637 13565 14334 14182 15277 18046 3142.3 1 1 1 1 1 1 1 1 1 1 4919 2193 4331 4617 5463 5463 3973 SSDTSGSPATPLK 13 Phospho (STY) _S(ph)SDTSGSPATPLK_ S(0.755)S(0.245)DTSGSPATPLK S(4.89)S(-4.89)DT(-60.59)S(-96.62)GS(-118.3)PAT(-183.43)PLK 0 0 1 0 Q7Z5R6 Q7Z5R6 Q7Z5R6 APBB1IP Amyloid beta A4 precursor protein-binding family B member 1-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 893.458618164063 2 664.292497 1326.57044 32793.7214482099 2.3979 0.0015929 344970 229.16 344980 229.17 893.456511090707 51.176 0.46701 51.176 50.907 51.374 0 25 15 2 0.971251618873034 0.00103955859061918 0.0110229085020105 3.2096E-41 1 11879 344.84 290.35 6 21462000 23513 6349.3 24526 6226.3 31037 23112 31608 21120 5521.3 14946 22253 5997.2 24719 6671.8 31096 22416 31433 21712 6554.3 14562 1 1 1 1 1 1 1 1 1 1 4920 1351 4332 4618 5464 5464 2448 SSDYQFPSSPFTDTLK 16 Phospho (STY) _SSDYQFPSS(ph)PFTDTLK_ SSDYQFPS(0.008)S(0.986)PFT(0.005)DTLK S(-101.7)S(-101.7)DY(-96.93)QFPS(-20.66)S(20.66)PFT(-22.69)DT(-36.42)LK 0 0 1 0 Q9UK61 Q9UK61 Q9UK61 FAM208A Protein FAM208A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.050598144531 3 633.93979 1898.79754 36392.5927244878 1.9398 0.0012297 240990 152.78 241000 152.78 787.04977187994 93.884 0.6909 93.884 93.562 94.253 0 34 23 2 0.510355219666489 0.00188978325288285 0.105152506147551 5.1966E-05 1 21851 124.08 104.75 7 10222000 7608.6 7530.5 6905.8 6949.1 4536.1 8939.5 4834.2 7967.9 8433.2 28475 7197.1 7110.5 6965.7 7202.5 4750.8 8913.1 5005.1 8888 8168.4 26997 1 1 1 1 1 1 1 1 1 1 4921 2167 4333 4619 5465 5465 3902;3903;3904 SSDYQFPSSPFTDTLK 16 Phospho (STY) _S(ph)SDYQFPSSPFTDTLK_ S(0.457)S(0.457)DY(0.085)QFPS(0.001)SPFTDTLK S(0)S(0)DY(-7.31)QFPS(-29.5)S(-34.32)PFT(-47.4)DT(-56.13)LK 0 0 1 0 Q9UK61 Q9UK61 Q9UK61 FAM208A Protein FAM208A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.049438476563 3 633.93979 1898.79754 35197.4583627817 1.8035 0.0011433 240990 152.78 241000 152.78 787.050209221055 97.435 0.63387 97.435 97.126 97.76 0 35 21 2 0.448220338804745 0.00163634939316724 0.0325989097084547 0.010012 1 22634 74.141 54.886 7 5669900 4449.9 3865 4953.7 4176.9 6120.5 5273.1 5227.9 5184.3 5465.9 18752 4212.6 3652.9 4971.7 4287.3 6129.8 5270.8 5370.9 5768.7 5383.1 17777 1 1 1 1 1 1 1 1 1 1 4922 2167 4333 4619 5466 5466 3902;3903;3904 SSEFEDFWRPPSPSASPASEK 21 Phospho (STY) _SSEFEDFWRPPS(ph)PSASPASEK_ SSEFEDFWRPPS(0.869)PS(0.126)AS(0.005)PASEK S(-106.72)S(-102.14)EFEDFWRPPS(8.4)PS(-8.4)AS(-22.34)PAS(-48.34)EK 0 0 1 1 Q99684 Q99684 Q99684 GFI1 Zinc finger protein Gfi-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 959.792297363281 3 806.681038 2417.02129 31688.662414789 1.8239 0.0014713 189390 152.77 189390 152.78 959.790590726247 88.614 0.74265 88.614 88.196 88.939 0 83 25 4 0.945454538665872 0.00422088648645947 0.0893964564178966 2.258E-08 1 20671 168.92 148.42 6 18239000 21647 5118.5 22379 5511.8 8699.5 22664 8176.7 13441 5791.9 25113 20487 4837.5 22324 5910.9 9626.3 21884 8283 14596 5816 23958 1 1 1 1 1 1 1 1 1 1 4923 1782 4334 4620 5467 5467 3285 SSELLGQAAR 10 Phospho (STY) _S(ph)SELLGQAAR_ S(0.993)S(0.007)ELLGQAAR S(21.56)S(-21.56)ELLGQAAR 0 0 1 0 Q96B45 Q96B45 Q96B45 C10orf32 UPF0693 protein C10orf32 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.843383789063 2 556.260803 1110.50705 38280.5877508853 1.2605 0.00070115 205980 114.58 205990 114.58 670.841812784883 52.854 0.34923 52.854 52.607 52.956 0 25 11 3 0.830869888706998 0.00098890509495075 0.0139683836570003 3.5843E-06 1 12304 142.76 89.75 2 21138000 31138 23217 29612 24789 20281 33569 19226 23343 25452 5629 29459 21941 29789 25498 21123 33139 19791 23981 24849 5840.6 1 1 1 1 1 1 1 1 1 1 4924 1654 4335 4621 5468 5468 3049 SSEPPPPPQPPTHQASVGLLDTPRSR 26 Acetyl (Protein N-term),Phospho (STY) _(ac)SSEPPPPPQPPTHQASVGLLDTPRS(ph)R_ SSEPPPPPQPPT(0.002)HQAS(0.004)VGLLDT(0.296)PRS(0.698)R S(-44.66)S(-44.66)EPPPPPQPPT(-25.27)HQAS(-22.51)VGLLDT(-3.73)PRS(3.73)R 1 0 1 1 Q9Y2V2 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 957.465881347656 3 957.465938 2869.37599 32173.4514048211 1.3984 0.0013389 0.21292 0.00020386 1.6113 0.0015428 957.80014446255 59.44 1.1476 59.44 58.876 60.023 7.1054E-15 107 39 4 0.951323820485108 0.000852544561829952 0.0188188126187859 0.0073427 1 13928 50.627 36.945 6 10952000 3009.3 3719.2 3092.4 4112 4031.4 2406.6 3063.7 3851.1 3908.7 9350 2847.9 3515.6 3118.8 4170.7 4022.7 2524.1 3188.2 4088.7 3820.9 8893.3 1 1 1 1 1 1 1 1 1 1 4925 2256 4336 4622 5469 5469 4167 SSEPVKETVQTTQSPTPVEK 20 Phospho (STY) _SSEPVKETVQTTQS(ph)PTPVEK_ SSEPVKETVQTT(0.003)QS(0.997)PTPVEK S(-104.5)S(-104.5)EPVKET(-50.42)VQT(-41.1)T(-25.51)QS(25.51)PT(-57.76)PVEK 0 0 1 1 Q9UPN6 Q9UPN6 Q9UPN6 SCAF8 Protein SCAF8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 980.859252929688 3 751.361306 2251.06209 31851.5194298865 1.398 0.0010504 305000 229.16 305000 229.16 980.858740575914 52.697 0.37897 52.697 52.463 52.842 0 54 12 5 0.988721438894124 0.00664497167436048 0.114782989728651 4.6179E-32 1 12250 317.89 276.81 7 63909000 26349 29436 27346 30015 18307 25455 20199 27757 31744 4404.2 24936 27810 27371 30710 19150 25755 20787 27886 30832 4789.5 1 1 1 1 1 1 1 1 1 1 4926 2213 4337 4623 5470 5470 4007 SSERPLSPK 9 Phospho (STY) _SSERPLS(ph)PK_ SSERPLS(1)PK S(-51.45)S(-52.5)ERPLS(51.45)PK 0 0 1 1 Q15052 Q15052 Q15052 ARHGEF6 Rho guanine nucleotide exchange factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.617126464844 3 360.841023 1079.50124 42788.5580367466 1.5573 0.00056195 423390 152.78 423390 152.78 513.616447230538 38.481 0.83892 38.481 38.183 39.022 7.1054E-15 96 28 5 0.884244049531556 0.0083790005488333 0.107442885507341 0.0024121 1 8688 94.538 71.162 3 319150000 59741 13773 65617 16212 57256 61662 58976 46671 16069 7345 56552 13025 65636 17228 58581 59604 58775 47617 17676 7996.3 1 1 1 1 1 1 1 1 1 1 4927 1051 4338 4624 5471 5471 1815 SSESELSK 8 Phospho (STY) _SS(ph)ESELSK_ S(0.104)S(0.896)ESELSK S(-9.33)S(9.33)ES(-60.81)ELS(-155.55)K 0 0 1 0 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.855529785156 2 473.691887 945.369222 37274.1291871575 1.8595 0.00088083 483780 229.16 483780 229.16 702.85495477675 43.296 0.49239 43.296 43.03 43.522 7.1054E-15 30 16 2 0.9954603460051 0.00631562138947155 0.109255921601017 8.4842E-22 1 9902 287.77 157.46 4 92074000 64371 89078 65150 86344 71557 62373 77232 77666 92589 8473.4 60915 84133 65647 88437 72333 63797 78763 77568 90706 9776.2 1 1 1 1 1 1 1 1 1 1 4928 1180 4339 4625 5472 5472 2049 SSESGNSVKR 10 Phospho (STY) _SSESGNS(ph)VKR_ SSES(0.011)GNS(0.989)VKR S(-42.44)S(-41.83)ES(-19.66)GNS(19.66)VKR 0 0 1 1 Q9GZU8 Q9GZU8 Q9GZU8 FAM192A Protein FAM192A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.275085449219 3 377.499437 1129.47648 42905.9164668876 1.2251 0.00046249 404700 152.78 404700 152.78 530.274329686248 24.985 0.29113 24.985 24.832 25.123 -3.5527E-15 32 9 4 0.928030398414571 0.00667976993861453 0.0786805986387218 0.0069473 1 5580 82.55 53.807 4 13503000 8909.7 7829 9543.2 9718.9 6659.6 9191.8 6259.8 7607.6 7890.8 2761 8433.2 7406.5 9536.9 9855.3 6924.3 9222.3 6435.8 7775.5 7716.7 2775.9 1 1 1 1 1 1 1 1 1 1 4929 1893 4340 4626 5473 5473 3447 SSFFSDRGSGSR 12 Phospho (STY) _SSFFSDRGS(ph)GSR_ SSFFSDRGS(0.861)GS(0.139)R S(-85.58)S(-81.3)FFS(-53.3)DRGS(7.93)GS(-7.93)R 0 0 1 1 O00571 O00571 O00571 DDX3X ATP-dependent RNA helicase DDX3X MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.577514648438 3 457.189262 1368.54596 43409.89593845 0.4737 0.00021657 167080 76.388 167080 76.388 533.57728669976 51.619 1.1811 51.619 51.225 52.406 0 134 40 5 0.916852472711799 0.00571000616095809 0.0478068169872357 7.5679E-05 1 11955 119.96 91.413 5 199590000 10278 17566 10096 16554 13693 9957.6 14205 15080 17605 3911.2 9724.5 16588 10221 16953 13694 10347 14528 15046 17227 4031.9 1 1 1 1 1 1 1 1 1 1 4930 56 4341 4627 5474 5474 82 SSFSITR 7 Phospho (STY) _SS(ph)FSITR_ S(0.156)S(0.844)FSITR S(-7.33)S(7.33)FS(-53.87)IT(-107.56)R 0 0 1 0 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 553.776062011719 2 439.1944 876.374248 41966.5583157166 0.76355 0.00033534 260890 114.58 260890 114.58 553.775781871822 54.757 0.42822 54.757 54.526 54.955 0 37 14 3 0.920522154527257 0.000979028283136314 0.00748416263770981 4.523E-05 1 12755 145.72 38.149 4 24934000 17128 15994 17034 15149 17363 14636 17712 16506 16261 2739.3 16207 15104 17163 15598 17605 14722 17973 16567 16106 2961.4 1 1 1 1 1 1 1 1 1 1 4931 2257 4342 4628 5475 5475 4181 SSFSSDPDEK 10 Phospho (STY) _S(ph)SFSSDPDEK_ S(0.874)S(0.126)FSSDPDEK S(8.39)S(-8.39)FS(-48)S(-77.4)DPDEK 0 0 1 0 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.880126953125 2 589.716091 1177.41763 34725.3668049557 2.1972 0.0012957 388590 229.16 388600 229.16 819.375385552565 46.682 0.86034 46.682 46.317 47.178 0 83 29 4 0.981148196450456 0.00141722012105393 0.0161434031937767 2.5996E-14 1 10812 227.72 160.39 4 19472000 42778 21415 43545 22005 33281 43223 31808 34207 22640 9102.2 40482 20233 43675 22899 34350 42282 32198 34936 22728 9362.5 1 1 1 1 1 1 1 1 1 1 4932 603 4343 4629 5476 5476 993 SSFVSDNSLNRSPR 14 Phospho (STY) _SSFVSDNSLNRS(ph)PR_ SSFVS(0.001)DNS(0.09)LNRS(0.909)PR S(-39.38)S(-39.38)FVS(-32.54)DNS(-10.04)LNRS(10.04)PR 0 0 1 1 Q6UB98 Q6UB98 Q6UB98 ANKRD12 Ankyrin repeat domain-containing protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.638061523438 3 549.249181 1644.72571 40247.7057150133 0.78035 0.00042861 139080 76.388 139080 76.389 625.63774038138 48.319 0.46693 48.319 48.038 48.505 0 26 15 2 0.960478033081995 0.000845985738993924 0.0094651084623804 0.019323 1 11218 60.034 23.923 5 13314000 10899 10631 11573 9787.1 8953.7 11111 7369.2 9498.2 11607 4574.2 10316 10038 11580 10122 9222.5 11067 7693.3 9727.8 11273 4527 1 1 1 1 1 1 1 1 1 1 4933 1279 4344 4630 5477 5477 2277 SSGEIVYCGQVFEKSPLR 18 Phospho (STY) _SSGEIVYCGQVFEKS(ph)PLR_ SSGEIVYCGQVFEKS(1)PLR S(-214.22)S(-214.22)GEIVY(-196.46)CGQVFEKS(196.46)PLR 0 0 1 1 Q02543 Q02543 Q02543 RPL18A 60S ribosomal protein L18a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.774230957031 3 712.665895 2134.97586 33163.692459905 1.5122 0.0010777 214370 152.78 214370 152.78 865.775851520066 76.043 1.1101 76.043 75.685 76.795 0 119 37 5 0.993570290292298 0.00628274076783629 0.0496984885220121 9.8987E-17 1 17807 246 212.16 4 89858000 13100 23752 14387 21971 15596 14447 18440 19362 25011 52249 12401 22428 14433 22547 15802 14977 18814 20805 24400 49647 1 1 1 1 1 1 1 1 1 1 4934 852 4345 4631 5478 5478 1375 SSGFSGK 7 Phospho (STY) _SSGFS(ph)GK_ S(0.003)S(0.001)GFS(0.995)GK S(-24.6)S(-28.47)GFS(24.6)GK 0 0 1 0 Q7L014 Q7L014 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 604.31103515625 2 375.146919 748.279285 39920.7727818994 1.7285 0.00064843 610860 229.16 610860 229.16 604.309871941986 45.236 0.43163 45.236 44.948 45.379 7.1054E-15 27 14 2 0.877910483269884 0.00201174664066633 0.0730396326329695 0.011219 1 10392 86.18 68.272 3 26759000 23232 35721 24107 35869 42100 20939 49252 39022 36291 5198.1 21987 33745 24458 36580 41750 21891 49436 38597 36358 5797.7 1 1 1 1 1 1 1 1 1 1 4935 1316 4346 4632 5479 5479 2352 SSGKTPETLVPTAPK 15 Phospho (STY) _S(ph)SGKTPETLVPTAPK_ S(0.798)S(0.19)GKT(0.012)PETLVPTAPK S(6.24)S(-6.24)GKT(-18.31)PET(-33.38)LVPT(-52.24)APK 0 0 1 1 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.767211914063 3 531.602561 1591.78585 37305.3237962031 2.1026 0.0011177 431080 229.16 431080 229.16 761.098803139349 65.497 0.95385 65.497 64.794 65.748 0 65 32 4 0.550044120345691 0.0015993350836576 0.0406542654884688 0.0060281 1 15376 84.946 67.727 5 11056000 12051 14925 10836 14227 15432 10794 15600 13825 14753 9615.6 11399 14095 11038 14596 15391 11029 15848 14040 14593 9374.2 1 1 1 1 1 1 1 1 1 1 4936 1016 4347 4633 5480 5480 1730;4559 SSGLRNSATGYR 12 Phospho (STY) _SSGLRNS(ph)ATGYR_ SSGLRNS(0.985)AT(0.015)GYR S(-54.78)S(-49.81)GLRNS(18.1)AT(-18.1)GY(-73.99)R 0 0 1 1 Q9UIQ6 Q9UIQ6 Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 526.59375 3 450.205024 1347.59324 43187.1739034658 1.2433 0.00055972 169670 76.388 169670 76.388 526.59248879578 31.414 0.55065 31.414 31.152 31.702 0 49 18 4 0.963939868389096 0.004027064346483 0.0510230316874032 9.4476E-05 1 7004 115.29 97.542 5 29499000 8718.8 8962.7 8786.1 9533.8 9348.2 7911.3 12020 10020 9565.3 1647.8 8250.5 8470 8855.1 9728.1 9488.8 8031.8 12040 10018 9542.2 1783.5 1 1 1 1 1 1 1 1 1 1 4937 2159 4348 4634 5481 5481 3889 SSGMFPFQMHTHTDIGGPLVK 21 Oxidation (M),Phospho (STY) _S(ph)SGM(ox)FPFQMHTHTDIGGPLVK_ SSGM(0.5)FPFQM(0.5)HTHTDIGGPLVK S(0.25)S(0.25)GMFPFQMHT(0.25)HT(0.25)DIGGPLVK SSGM(0)FPFQM(0)HTHTDIGGPLVK S(0)S(0)GMFPFQMHT(0)HT(0)DIGGPLVK 0 1 1 0 REV__Q14117 REV__Q14117 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1421.19714355469 2 1192.03417 2382.05379 NaN NaN NaN NaN NaN NaN NaN NaN 102.74 1 102.74 102.24 103.24 0 NaN NaN NaN 0.056604 1 24213 40.113 17.234 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 4938 2332 4349 4635 5482 5482 250;251 4289;4290;4861 SSGNSSSSGSGSGSTSAGSSSPGAR 25 Phospho (STY) _SSGNSSSSGSGSGSTSAGSSS(ph)PGAR_ SSGNSSSSGSGSGSTSAGS(0.002)S(0.087)S(0.912)PGAR S(-149.45)S(-149.45)GNS(-136.37)S(-132.29)S(-132.29)S(-132.29)GS(-127.86)GS(-106.66)GS(-88.1)T(-76.33)S(-54.54)AGS(-27.7)S(-10.21)S(10.21)PGAR 0 0 1 0 Q12797 Q12797 Q12797 ASPH Aspartyl/asparaginyl beta-hydroxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.011108398438 3 728.287528 2181.84076 35628.6528984913 2.1498 0.0015656 104880 76.386 104890 76.388 805.008668293881 21.135 0.346 21.135 20.997 21.343 0 27 11 4 0.980934588777609 0.00595973808529874 0.0128456982269253 1.95E-12 1 4783 203.45 191.82 14 6673200 0 0 0 0 0 0 0 35.736 0 5096.9 0 0 0 0 0 0 0 188.04 0 4800.1 0 0 0 0 0 0 0 1 0 1 4939 900 4350 4636 5483 5483 1485 SSGPTSLFAVTVAPPGAR 18 Phospho (STY) _S(ph)SGPTSLFAVTVAPPGAR_ S(0.423)S(0.423)GPT(0.15)S(0.004)LFAVTVAPPGAR S(0)S(0)GPT(-4.51)S(-19.97)LFAVT(-113.39)VAPPGAR 0 0 1 0 Q00839 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 675.353332519531 3 598.964381 1793.87131 38309.7165229269 1.7671 0.0010584 127530 76.388 127530 76.389 675.686397039138 93.833 0.63379 93.833 93.534 94.168 0 64 21 4 0.882672677270268 0.00133701647414488 0.0584975108692088 2.2563E-07 1 21821 142.97 121.38 5 11756000 3533.6 5726.9 4445.6 5666.6 4911.3 4154.7 5655.4 5565.9 5003.5 27895 3347.1 5409.7 4431.1 5797.7 4966.4 4302.2 5703.1 6368.8 4964.6 26395 1 1 1 1 1 1 1 1 1 1 4940 829 4351 4637 5484 5484 1328;1329 SSGPYGGGGQYFAK 14 Phospho (STY) _S(ph)SGPYGGGGQYFAK_ S(0.5)S(0.5)GPYGGGGQYFAK S(0)S(0)GPY(-51.84)GGGGQY(-110.01)FAK 0 0 1 0 P09651;Q32P51 P09651 P09651 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.980224609375 3 485.86953 1454.58676 38480.5628625654 2.0797 0.0010105 314440 152.77 314440 152.78 638.643803689834 66.602 0.51707 66.602 66.374 66.891 0 56 17 4 0.987875319263124 0.00481417511266188 0.06025110589068 8.5456E-07 1 15624 139.93 112.08 4 21555000 9868.5 12336 11274 11507 10225 10666 11910 12964 14671 4770.3 9343.4 11649 11262 11852 10465 10766 12118 13058 14358 4791.8 1 1 1 1 1 1 1 1 1 1 4941 341 4352 4638 5485 5485 560;561 SSGPYGGGGQYFAKPR 16 Phospho (STY) _S(ph)SGPYGGGGQYFAKPR_ S(0.967)S(0.033)GPYGGGGQYFAKPR S(14.67)S(-14.67)GPY(-82.43)GGGGQY(-158.54)FAKPR 0 0 1 1 P09651 P09651 P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.030944824219 3 570.254155 1707.74063 36791.8495592111 1.9318 0.0011016 267910 152.78 267910 152.78 723.363918638839 59.555 0.68945 59.555 59.162 59.851 0 82 23 4 0.993808879039158 0.00907157879205247 0.137146960389445 6.5773E-11 1 13924 197.53 164.13 4 104250000 36544 43128 32153 43291 33398 36279 43817 42190 43068 9952.8 34564 40742 32663 44327 33966 36771 44081 42391 42527 10348 1 1 1 1 1 1 1 1 1 1 4942 341 4353 4639 5486 5486 560;561 SSGSETEQVVDFSDR 15 Phospho (STY) _SSGS(ph)ETEQVVDFSDR_ S(0.011)S(0.038)GS(0.936)ET(0.015)EQVVDFSDR S(-19.22)S(-13.94)GS(13.94)ET(-17.91)EQVVDFS(-92.12)DR 0 0 1 0 O95251 O95251 O95251 KAT7 Histone acetyltransferase KAT7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 976.930786132813 2 861.846353 1721.67815 31069.3993480835 1.7056 0.00147 132950 114.58 132950 114.58 976.927634159234 61.332 0.76789 61.332 61.095 61.863 0 32 25 2 0.96811464830918 0.000479273434452667 0.0170791220068928 1.6598E-11 1 14377 211.45 183.4 5 10907000 10562 7302.4 9704.6 7580.2 7361.7 10588 8573.9 10118 8614.5 11232 9991.5 6899.9 9794.9 7814.5 7626.1 10493 8670.4 10505 8498.2 10811 1 1 1 1 1 1 1 1 1 1 4943 239 4354 4640 5487 5487 411 SSGSPYGGGYGSGGGSGGYGSR 22 Phospho (STY) _SSGS(ph)PYGGGYGSGGGSGGYGSR_ SSGS(1)PYGGGYGSGGGSGGYGSR S(-54.58)S(-47.02)GS(47.02)PY(-156.95)GGGY(-176.8)GS(-113.83)GGGS(-154.76)GGY(-221.36)GS(-220.05)R 0 0 1 0 P51991 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1110.96752929688 2 995.88179 1989.74903 29838.0692950501 1.0646 0.0010602 115060 114.58 115060 114.58 1110.96494277259 39.871 1.115 39.871 39.543 40.658 7.1054E-15 135 37 6 0.996520831309729 0.00317735657559214 0.107177040460918 6.5075E-54 1 9011 376.21 358.41 9 579870000 12986 16499 16794 14972 15022 19693 23658 20724 19027 12220 12302 15577 16686 15542 15467 19564 23540 21116 18971 11986 1 1 1 1 1 1 1 1 1 1 4944 686 4355 4641 5488 5488 1154;1155 SSGSPYGGGYGSGGGSGGYGSR 22 Phospho (STY) _SSGSPYGGGYGS(ph)GGGSGGYGSR_ SSGSPYGGGYGS(1)GGGSGGYGSR S(-83.57)S(-71.24)GS(-45.13)PY(-61.57)GGGY(-68.41)GS(43.38)GGGS(-43.38)GGY(-139.77)GS(-111.98)R 0 0 1 0 P51991 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1110.96472167969 2 995.88179 1989.74903 30026.1817066118 1.4642 0.0014582 115050 114.58 115060 114.58 1110.96355511688 41.945 0.51033 41.945 41.655 42.165 0 40 17 3 0.844808557652214 0.00101267828073747 0.0287051494555476 1.4738E-16 2 9588 215.51 201.04 9 16488000 13279 12995 14361 12316 12134 18842 15683 14581 13080 35183 12569 12272 14378 12792 12493 18607 15722 15851 13017 33466 2 2 2 2 2 2 2 2 2 2 4945 686 4355 4641 5489;5490 5490 1154;1155 SSGTNFQGLPSK 12 Phospho (STY) _S(ph)SGTNFQGLPSK_ S(0.5)S(0.5)GT(0.001)NFQGLPSK S(0)S(0)GT(-27.24)NFQGLPS(-163.02)K 0 0 1 0 Q68EM7 Q68EM7 Q68EM7 ARHGAP17 Rho GTPase-activating protein 17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 587.638610839844 3 434.862375 1301.5653 40475.8549978972 2.18 0.00094799 351320 152.78 351320 152.78 587.637734979081 63.327 0.64241 63.327 63.02 63.662 0 81 21 5 0.988018003496938 0.0140108484178491 0.306936315305697 6.5919E-11 1 14853 182.52 149.57 4 99329000 29026 15360 31856 13651 28326 33029 31290 26131 14796 3823 27477 14501 31877 14432 28981 32162 31257 26594 15299 4204.6 1 1 1 1 1 1 1 1 1 1 4946 1230 4356 4642 5491 5491 2171;2172 SSILPFTPPIVK 12 Acetyl (Protein N-term),Phospho (STY) _(ac)SSILPFT(ph)PPIVK_ S(0.037)S(0.037)ILPFT(0.927)PPIVK S(-14.03)S(-14.03)ILPFT(14.03)PPIVK 1 0 1 0 P84022 P84022 P84022 SMAD3 Mothers against decapentaplegic homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.961242675781 2 710.878011 1419.74147 34707.4059307023 1.7992 0.001279 161180 114.58 161180 114.58 825.459052315001 102.84 0.34593 102.84 102.63 102.97 0 34 11 5 0.870639101808586 0.00300865549603649 0.0645626855399711 0.0064921 1 24225 60.49 35.636 3 51622000 4883.4 18002 6576.6 19095 5827.5 6441.4 7902 12135 21713 25632 4627.3 17012 6519.6 19336 6000.4 7141 8322.1 12724 20838 24417 1 1 1 1 1 1 1 1 1 1 4947 810 4357 4643 5492 5492 4503 SSKNTDFFIGK 11 2 Phospho (STY) _S(ph)S(ph)KNTDFFIGK_ S(0.988)S(0.591)KNT(0.421)DFFIGK S(16.89)S(1.51)KNT(-1.51)DFFIGK 0 0 2 1 Q09328 Q09328 Q09328 MGAT5 Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.69189453125 3 468.526314 1402.55711 NaN NaN NaN NaN NaN NaN NaN NaN 101.51 1 101.51 101.01 102.01 0 NaN NaN NaN 0.052787 1 23865 40.025 15.089 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4948 894 4360 4644 5493 5493 1456;1457 SSKSAGALEEGTSEGQLCGR 20 Phospho (STY) _SSKS(ph)AGALEEGTSEGQLCGR_ S(0.01)S(0.048)KS(0.942)AGALEEGTSEGQLCGR S(-19.9)S(-12.92)KS(12.92)AGALEEGT(-40.66)S(-35.78)EGQLCGR 0 0 1 1 Q8N2F6 Q8N2F6 Q8N2F6 ARMC10 Armadillo repeat-containing protein 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.08154296875 3 701.971935 2102.89398 33614.7215438316 1.7459 0.0012256 217640 152.78 217640 152.78 854.747355059606 49.919 0.40917 49.919 49.718 50.128 7.1054E-15 37 13 4 0.981717704925788 0.00279769850639132 0.0400990023016776 3.3053E-16 1 11587 221.5 200.89 5 20785000 12922 19048 12895 22164 20273 13569 21463 18562 21396 8439.8 12227 18012 13079 22429 20154 14063 21789 18680 21114 8376.7 1 1 1 1 1 1 1 1 1 1 4949 1459 4361 4645 5494 5494 2703 SSLDLSYYPTSSSTSFMSSSSSSSSWLTR 29 Oxidation (M),Phospho (STY) _S(ph)SLDLSYYPTSSSTSFM(ox)SSSSSSSSWLTR_ SSLDLSYYPTSSSTSFM(1)SSSSSSSSWLTR S(0.5)S(0.5)LDLS(0.001)YYPTSSSTSFMSSSSSSSSWLTR SSLDLSYYPTSSSTSFM(177.99)SSSSSSSSWLTR S(0)S(0)LDLS(-28.25)Y(-61.64)Y(-61.05)PT(-77.05)S(-76.5)S(-84.33)S(-92.01)T(-99.54)S(-106.91)FMS(-132.48)S(-137.9)S(-143.11)S(-148.09)S(-152.81)S(-157.26)S(-161.39)S(-165.18)WLT(-173.65)R 0 1 1 0 P50402 P50402 P50402 EMD Emerin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1151.17993164063 3 1074.45499 3220.34315 29776.5301531352 1.5152 0.0016281 71093 76.387 71095 76.388 1151.17589768517 93.986 0.3742 93.986 93.822 94.196 1.4211E-14 37 12 4 0.825564973557916 0.00253113166076018 0.0777023441329796 1.1441E-11 1 21876 177.99 160.09 20 10196000 1738.3 1795.8 1798 2020.3 1330.4 1105 1639.9 3863.6 2342.5 55917 1645.1 1697.7 1801.9 2046 1382.7 1288.3 1673.6 5453.4 2281.6 52742 1 1 1 1 1 1 1 1 1 1 4950 662 4362 4646 5495 5495 86 1119;1120 SSLEISSSCFSLETK 15 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)SLEISSSCFSLETK_ S(0.5)S(0.5)LEISSSCFSLETK S(0)S(0)LEIS(-34.47)S(-54.04)S(-63.47)CFS(-89.6)LET(-112.13)K 1 0 1 0 O96007 O96007 O96007 MOCS2 Molybdopterin synthase catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1013.97082519531 2 898.886632 1795.75871 31271.7922896546 1.5829 0.0014228 127470 114.58 127470 114.58 1013.968876736 92.429 0.54515 92.429 92.169 92.715 0 53 18 4 0.945239243179468 0.00130446830448669 0.0771733068446886 9.1228E-11 1 21509 149.31 122.19 7 15261000 3195.6 4764.8 2894 4810.1 12234 3668.9 13773 8406.1 5080 28111 3022.7 4501.4 3048.7 4917.7 11877 3840.8 13708 9095.4 5381.2 26665 1 1 1 1 1 1 1 1 1 1 4951 273 4363 4647 5496 5496 455;456 SSLFSPR 7 Phospho (STY) _SSLFS(ph)PR_ SS(0.001)LFS(0.998)PR S(-33.86)S(-28.66)LFS(28.66)PR 0 0 1 0 Q7RTP6 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.779602050781 2 437.196943 872.379333 41788.2257631965 1.4915 0.00065207 262080 114.58 262080 114.58 551.778458094241 65.01 0.74333 65.01 64.684 65.427 0 58 25 3 0.979367769809284 0.000991668863001201 0.0183683459669664 0.019109 1 15254 72.638 20.689 3 11798000 9755 9096.9 9784 9476 7169.2 9450.9 7191.9 8208 9349.5 2696.7 9230.9 8595.7 9818.3 9706.1 7432.1 9463.8 7378.7 8362.7 9133.7 2729.2 1 1 1 1 1 1 1 1 1 1 4952 1324 4364 4648 5497 5497 2373 SSLGSLQTPEAVTTR 15 Phospho (STY) _SS(ph)LGSLQTPEAVTTR_ S(0.361)S(0.638)LGS(0.001)LQTPEAVTTR S(-2.47)S(2.47)LGS(-30.94)LQT(-86.25)PEAVT(-140.31)T(-151.51)R 0 0 1 0 Q7Z2W4 Q7Z2W4 Q7Z2W4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 928.975646972656 2 813.890367 1625.76618 32219.9042395569 1.5689 0.0012769 140780 114.58 140780 114.58 928.472450470836 64.642 0.5233 64.642 64.356 64.879 0 59 17 4 0.977421839035778 0.00130154639533333 0.0373433743587563 1.7552E-15 1 15153 213.55 175.11 6 45071000 11290 14192 11823 13486 12482 12619 12580 13197 14137 21484 10686 13402 11883 13876 12631 12735 12843 13863 13883 20535 1 1 1 1 1 1 1 1 1 1 4953 1328 4365 4649 5498 5498 2383 SSLKAEAENTSEVSTVLK 18 Phospho (STY) _SS(ph)LKAEAENTSEVSTVLK_ S(0.147)S(0.853)LKAEAENTSEVSTVLK S(-7.63)S(7.63)LKAEAENT(-119.07)S(-145.4)EVS(-198.83)T(-218.71)VLK 0 0 1 1 Q16512 Q16512 Q16512 PKN1 Serine/threonine-protein kinase N1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.820434570313 3 658.32067 1971.94018 33880.662377834 2.4065 0.0015842 348100 229.16 348110 229.16 887.818533310503 77.143 0.45569 77.143 76.912 77.368 1.4211E-14 51 15 5 0.976409317213724 0.0050531835759803 0.0329464421659185 1.7462E-41 1 18085 334.49 292.36 6 29876000 13433 18513 16514 20424 27335 15935 27854 21970 23691 13800 12723 17500 16585 20782 27105 16274 28214 22220 23553 13503 1 1 1 1 1 1 1 1 1 1 4954 1102 4366 4650 5499 5499 1922 SSLNSSPWSGLMALGNSR 18 Oxidation (M),Phospho (STY) _SSLNSSPWSGLM(ox)ALGNS(ph)R_ SSLNSSPWSGLM(1)ALGNSR SSLNSSPWSGLMALGNS(1)R SSLNSSPWSGLM(123.68)ALGNSR S(-95.34)S(-95.34)LNS(-81.5)S(-76.87)PWS(-52.63)GLMALGNS(52.63)R 0 1 1 0 Q8TCJ2 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 730.681579589844 3 653.95919 1958.85574 35878.8547604665 1.4479 0.00094689 116810 76.387 116810 76.388 730.681063374117 87.606 0.61578 87.606 87.322 87.938 -1.4211E-14 73 20 5 0.919678017494615 0.00562203979183252 0.0853166324911374 2.9378E-05 1 20417 123.68 96.875 6 38767000 8980.2 7611 8615.5 7991.7 8748.8 8251.4 10841 9329.7 9490.3 12921 8496.2 7192 8701.9 8186.6 8898.8 8297 10898 9705.9 9421.4 12382 1 1 1 1 1 1 1 1 1 1 4955 1543 4367 4651 5500 5500 182 2834 SSLNSSPWSGLMALGNSR 18 Phospho (STY) _SSLNSSPWSGLMALGNS(ph)R_ SSLNSSPWSGLMALGNS(1)R S(-197.4)S(-189.41)LNS(-159.69)S(-154.93)PWS(-145.33)GLMALGNS(145.33)R 0 0 1 0 Q8TCJ2 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1087.52575683594 2 972.437689 1942.86083 29856.8591244306 1.5481 0.0015054 117830 114.58 117830 114.58 1087.52050779661 99.983 0.16512 99.983 99.892 100.06 0 16 5 4 0.796782469717384 0.00298041831597189 0.230390658955332 2.0719E-22 1 23294 254.3 233.05 6 56457000 46655 20872 48335 20990 43183 54220 43931 41611 23411 90164 44154 19718 48512 22079 44118 52876 44121 44944 23970 85863 1 1 1 1 1 1 1 1 1 1 4956 1543 4367 4652 5501 5501 2834 SSLSGDEEDELFK 13 Phospho (STY) _S(ph)SLSGDEEDELFK_ S(0.92)S(0.06)LS(0.02)GDEEDELFK S(11.87)S(-11.87)LS(-16.67)GDEEDELFK 0 0 1 0 Q5T1M5 Q5T1M5 Q5T1M5 FKBP15 FK506-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 997.475952148438 2 768.311084 1534.60761 31783.2312501369 1.9275 0.001481 298270 229.16 298270 229.16 997.474745624684 80.863 0.4668 80.863 80.638 81.105 1.4211E-14 28 15 3 0 0 0 4.1809E-31 1 18930 298.62 262.2 3 8437700 12825 7131.5 11724 6968.9 13831 12386 14223 11976 7567.5 21947 12131 6736 11896 7252.4 13911 12209 14277 12690 7749.2 20943 1 1 1 1 1 1 1 1 1 1 4957 1182 4368 4653 5502 5502 2058 SSLSTSSPESAR 12 Phospho (STY) _SSLSTSS(ph)PESAR_ SSLS(0.001)T(0.014)S(0.292)S(0.693)PESAR S(-65.37)S(-65.37)LS(-27.39)T(-17.04)S(-3.76)S(3.76)PES(-41.42)AR 0 0 1 0 Q8N7B6 Q8N7B6 Q8N7B6 PACRGL PACRG-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.358276367188 2 644.774471 1287.53439 35684.7329766434 1.335 0.00086078 177710 114.58 177710 114.58 759.356119728798 33.982 0.23248 33.982 33.845 34.077 0 12 7 2 0.903722451881302 0.0004918678204139 0.0181104463076821 2.3244E-07 1 7616 163.11 120.43 7 6415000 12541 11454 10247 11132 8854.9 12251 7232.2 11024 12878 4648.1 11858 10819 10430 11468 9050.5 12223 7594.3 11245 12467 4631.9 1 1 1 1 1 1 1 1 1 1 4958 1483 4369 4654 5503 5503 2732 SSLVTSK 7 Phospho (STY) _S(ph)SLVTSK_ S(0.726)S(0.274)LVTSK S(4.24)S(-4.24)LVT(-66.96)S(-65.36)K 0 0 1 0 O43768 O43768 O43768 ENSA Alpha-endosulfine MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.355041503906 2 401.191326 800.3681 39653.909559173 2.702 0.001084 571210 229.16 571210 229.16 630.354495827648 53.843 0.82496 53.843 53.475 54.299 0 101 27 5 0.942938884388281 0.0082505301707049 0.201522966657508 3.6645E-05 1 12520 151.48 32.412 4 296320000 86669 60148 84577 55465 130370 86826 137200 89129 58366 4695.6 82003 56793 85858 57739 129620 85668 137170 89455 60933 6484.2 1 1 1 1 1 1 1 1 1 1 4959 128 4370 4655 5504 5504 222;223 SSLYGIAK 8 Phospho (STY) _S(ph)SLYGIAK_ S(0.732)S(0.268)LYGIAK S(4.37)S(-4.37)LY(-52.04)GIAK 0 0 1 0 Q5VZ89 Q5VZ89 Q5VZ89 DENND4C DENN domain-containing protein 4C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.882934570313 2 459.720251 917.425949 40559.1218350363 1.6268 0.00074786 498480 229.16 498480 229.16 688.882411319845 70.451 0.46741 70.451 70.215 70.683 0 35 15 3 0.98991674544918 0.00124142236918915 0.00568063494416504 0.0005597 1 16534 125.97 74.903 3 32738000 26994 27088 27317 27153 24467 27437 24460 27428 28396 8870 25545 25590 27453 27880 25001 27506 25006 27780 27851 8986.9 1 1 1 1 1 1 1 1 1 1 4960 1214 4371 4656 5505 5505 2134 SSMSGLHLVK 10 Oxidation (M),Phospho (STY) _SSM(ox)S(ph)GLHLVK_ SSM(1)SGLHLVK S(0.079)S(0.079)MS(0.842)GLHLVK SSM(84.61)SGLHLVK S(-10.28)S(-10.28)MS(10.28)GLHLVK 0 1 1 0 Q13085 Q13085 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.291320800781 3 385.51403 1153.52026 42813.0806251937 0.62142 0.00023957 396290 152.78 396290 152.78 538.289805532032 57.94 0.40815 57.94 57.732 58.141 0 32 13 3 0.950216034062751 0.00173966065790875 0.0110414936812981 0.0056115 1 13555 84.605 43.065 3 19320000 9676.6 6414.3 9808.8 6399.9 8057.2 11364 10038 11149 7876 1677.3 9157 6059.3 9851.6 6651.9 8305.8 11169 10064 11242 7863 1837.4 1 1 1 1 1 1 1 1 1 1 4961 921 4372 4657 5506 5506 123 1519 SSMSGLHLVK 10 Phospho (STY) _SSMS(ph)GLHLVK_ S(0.018)S(0.039)MS(0.943)GLHLVK S(-17.27)S(-13.79)MS(13.79)GLHLVK 0 0 1 0 Q13085 Q13085 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 532.958374023438 3 380.182392 1137.52535 43560.6404324444 1.0574 0.00040202 401850 152.77 401850 152.77 532.957800308368 69.808 0.58368 69.808 69.546 70.13 0 62 19 5 0.979873717762672 0.00340165400866155 0.0754531615578557 0.0013034 1 16368 97.957 65.459 3 22885000 8351.4 6228.6 8941.8 5950.4 6149.6 12673 11292 11593 6527.2 2297 7904.8 5882.3 8945.5 6234.6 6473.7 12394 11117 11740 6642.5 2431.2 1 1 1 1 1 1 1 1 1 1 4962 921 4372 4658 5507 5507 1519 SSPAFTK 7 Phospho (STY) _S(ph)SPAFTK_ S(0.736)S(0.264)PAFTK S(4.44)S(-4.44)PAFT(-45.68)K 0 0 1 0 Q5VVQ6 Q5VVQ6 Q5VVQ6 YOD1 Ubiquitin thioesterase OTU1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.341369628906 2 409.178219 816.341885 39382.5926114964 1.6939 0.0006931 560060 229.16 560060 229.16 638.341347768987 50.49 0.77965 50.49 50.099 50.879 7.1054E-15 81 26 4 0.983091269210461 0.00220516872329214 0.0217311641455986 0.0010769 1 11678 122.28 72.727 3 83160000 10602 45295 11748 41784 43598 11703 41997 32953 45229 5417.6 10037 42769 12151 42633 42343 13350 42915 32394 44491 5864 1 1 1 1 1 1 1 1 1 1 4963 1208 4373 4659 5508 5508 2124 SSPAFTKR 8 Phospho (STY) _S(ph)SPAFTKR_ S(0.78)S(0.22)PAFTKR S(5.49)S(-5.49)PAFT(-57.75)KR 0 0 1 1 Q5VVQ6 Q5VVQ6 Q5VVQ6 YOD1 Ubiquitin thioesterase OTU1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 477.930908203125 3 325.154942 972.442996 45533.6976363486 0.43631 0.00014187 469850 152.78 469860 152.78 477.930744077107 40.197 0.76609 40.197 39.833 40.599 0 56 25 3 0.941765306114761 0.00172112434710786 0.01360874875206 0.0030672 1 9130 96.171 76.545 3 34235000 8177.1 28725 8819.3 27661 32231 9987.2 32261 23614 28813 1589.2 7740 27130 9130.3 28183 31323 10973 32743 23206 28576 2043 1 1 1 1 1 1 1 1 1 1 4964 1208 4374 4660 5509 5509 2124 SSPDGGLK 8 Phospho (STY) _S(ph)SPDGGLK_ S(0.905)S(0.095)PDGGLK S(9.81)S(-9.81)PDGGLK 0 0 1 0 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.836669921875 2 420.678583 839.342613 38113.7820062716 1.8911 0.00079553 544740 229.16 544740 229.16 650.341875918131 43.342 0.31064 43.342 43.182 43.492 0 25 10 3 0.907354161174845 0.000937030981868845 0.0194564984456409 0.0015504 1 9921 102.01 36.786 2 16704000 36902 22558 33734 23080 19086 38781 18787 25575 24657 6545.6 34907 21313 33971 23919 20234 38018 19299 26363 24080 6755.4 1 1 1 1 1 1 1 1 1 1 4965 624 4375 4661 5510 5510 1033 SSPELTR 7 Phospho (STY) _SS(ph)PELTR_ S(0.294)S(0.706)PELTR S(-3.8)S(3.8)PELT(-36.5)R 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.774353027344 2 435.191858 868.369162 42064.9068157911 1.1203 0.00048754 263290 114.58 263290 114.58 549.773123285187 33.26 0.58577 33.26 32.911 33.497 0 33 20 3 0.85296405010538 0.00133848675581537 0.0434372768703956 0.01113 1 7410 86.332 51.037 3 15430000 12207 10995 9408.7 11914 8793.1 11541 7719 8720 11718 2359 11540 10392 9625.3 12171 8948.2 11554 8018.3 8927.2 11392 2423.1 1 1 1 1 1 1 1 1 1 1 4966 2226 4376 4662 5511 5511 4071;4072 SSPEQPIGQGR 11 Phospho (STY) _S(ph)SPEQPIGQGR_ S(0.98)S(0.02)PEQPIGQGR S(16.84)S(-16.84)PEQPIGQGR 0 0 1 0 Q8N201 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.858520507813 2 618.274442 1234.53433 36563.4812690725 1.9177 0.0011857 185330 114.58 185330 114.58 732.856384247046 32.736 0.38243 32.736 32.5 32.882 0 36 12 4 0.991125920170101 0.00105178753219343 0.0196768436394809 5.9615E-10 1 7300 179.19 110.7 2 29448000 17518 13182 17343 11894 16328 18303 16037 16143 12831 3430.9 16576 12445 17460 12394 16623 18039 16250 16380 12797 3604.2 1 1 1 1 1 1 1 1 1 1 4967 1458 4377 4663 5512 5512 2702 SSPEQPRPSTSK 12 Phospho (STY) _SS(ph)PEQPRPSTSK_ S(0.184)S(0.816)PEQPRPSTSK S(-6.47)S(6.47)PEQPRPS(-98.88)T(-98.88)S(-106.72)K 0 0 1 1 P29590 P29590 P29590 PML Protein PML MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 919.977416992188 2 690.811388 1379.60822 32491.3289716157 1.9882 0.0013735 331730 229.16 331730 229.16 919.974228970644 29.443 0.41575 29.443 29.22 29.636 0 46 13 4 0.991611554365799 0.00190944437443135 0.0523861630223535 1.1605E-10 1 6537 177.42 137.38 5 56918000 8354.1 11136 7834.5 9883.1 27853 7450.3 32953 17233 9682.4 1152.3 7903.2 10513 8173.4 10185 27133 7701.2 32661 16941 10541 1483.9 1 1 1 1 1 1 1 1 1 1 4968 501 4378 4664 5513 5513 831 SSPFKVSPLTFGR 13 Phospho (STY) _SSPFKVS(ph)PLTFGR_ S(0.034)S(0.034)PFKVS(0.899)PLT(0.034)FGR S(-14.27)S(-14.27)PFKVS(14.24)PLT(-14.24)FGR 0 0 1 1 O95810 O95810 O95810 SDPR Serum deprivation-response protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.697631835938 3 501.584953 1501.73303 37747.9789474794 1.6735 0.00083941 304590 152.78 304590 152.78 654.695205954789 85.432 0.80346 85.432 84.982 85.786 0 85 27 4 0.991618481914692 0.00638858282064689 0.0514765467234014 0.0097963 1 19920 72.932 43.244 4 46223000 2414.4 13053 3283.2 12969 26964 2959.3 28764 15649 16782 7439.9 2287.9 12330 3549.3 13160 25979 3586.1 28865 15430 17067 7367.7 1 1 1 1 1 1 1 1 1 1 4969 263 4379 4665 5514 5514 440;441 SSPFKVSPLTFGR 13 2 Phospho (STY) _SS(ph)PFKVS(ph)PLTFGR_ S(0.087)S(0.913)PFKVS(0.913)PLT(0.087)FGR S(-10.33)S(10.33)PFKVS(10.33)PLT(-10.33)FGR 0 0 2 1 O95810 O95810 O95810 SDPR Serum deprivation-response protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.016845703125 3 528.240397 1581.69936 37648.2888790473 0.90426 0.00047767 289220 152.78 289220 152.78 681.016117694336 87.769 1.0981 87.769 87.438 88.536 0 77 37 3 0.864143732440232 0.00124504326556174 0.0137087045683021 0.041962 1 20455 47.618 25.012 6 16421000 3063 8238.7 3284.3 8370.7 5780.5 2893.3 5770.9 6927.6 8071.3 10623 2899.2 7783.5 3324.9 8498.7 5720.7 3215.2 5937.7 7112.6 7866.4 10163 1 1 1 1 1 1 1 1 1 1 4970 263 4379 4666 5515 5515 440;441 SSPGAVAGLSNAPGTPR 17 Phospho (STY) _SS(ph)PGAVAGLSNAPGTPR_ S(0.307)S(0.693)PGAVAGLSNAPGTPR S(-3.54)S(3.54)PGAVAGLS(-144.67)NAPGT(-214.54)PR 0 0 1 0 Q9BWG4 Q9BWG4 Q9BWG4 SSBP4 Single-stranded DNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 924.464599609375 2 809.882876 1617.7512 32706.7408740569 1.4695 0.0011901 141480 114.58 141480 114.58 924.464587681024 55.243 0.75847 55.243 54.955 55.713 0 54 25 4 0.981144246268232 0.00149343277880791 0.020972843843408 1.0057E-41 1 12872 351.2 300.92 4 37008000 15635 21867 14470 21307 15304 13023 15491 17024 23168 8167.5 14790 20654 14648 21779 15492 13489 15970 17167 22534 8084.7 1 1 1 1 1 1 1 1 1 1 4971 1851 4380 4667 5516 5516 3385 SSPGQTPEEGAQALAEFAALHGPALR 26 Phospho (STY) _S(ph)SPGQTPEEGAQALAEFAALHGPALR_ S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR S(0)S(0)PGQT(-76.98)PEEGAQALAEFAALHGPALR 0 0 1 0 Q14166 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 972.484191894531 3 895.760463 2684.25956 31841.6122111041 1.4417 0.0012914 85277 76.388 85278 76.389 972.482854898139 99.623 0.39768 99.623 99.522 99.92 0 64 13 8 0.999541057581537 0.0915153519331099 1 1.2269E-68 1 23157 431.48 402.14 3 2529200000 24502 31794 24309 30663 32784 22587 43342 32174 34256 30512 23185 30028 24613 31423 32909 23178 43362 32821 34186 29476 1 1 1 1 1 1 1 1 1 1 4972 995 4381 4668 5517 5517 1694;1695 SSPLIEK 7 Phospho (STY) _S(ph)SPLIEK_ S(0.618)S(0.382)PLIEK S(2.09)S(-2.09)PLIEK 0 0 1 0 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.371398925781 2 427.206976 852.3994 39623.4092265558 2.3655 0.0010105 536420 229.16 536420 229.16 656.370231738099 58.227 0.76466 58.227 57.963 58.728 0 69 25 4 0.92259453521731 0.00398798831657656 0.115467009141831 0.0015366 1 13655 114.89 57.791 2 53836000 52515 36825 47891 34834 27404 51000 29268 40998 38621 7533.9 49675 34776 48242 36148 29054 50287 29959 41739 37711 8042.9 1 1 1 1 1 1 1 1 1 1 4973 1243 4382 4669 5518 5518 2198;2199 SSPLPAK 7 Phospho (STY) _SS(ph)PLPAK_ S(0.299)S(0.701)PLPAK S(-3.7)S(3.7)PLPAK 0 0 1 0 Q7L2J0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.351501464844 2 390.188587 778.36262 40171.3203744116 0.24401 9.5209E-05 587310 229.16 587310 229.16 619.351561895179 47.235 0.48438 47.235 46.888 47.373 0 31 18 2 0.898906250270828 0.00178420180459409 0.00937593678380218 0.0019923 2 10914 107.57 77.734 2 77896000 47556 82928 50142 83025 62913 44650 66523 67357 88610 9769.8 45010 78339 50505 84625 63163 46771 68147 66978 86495 10758 2 2 2 2 2 2 2 2 2 2 4974 1317 4383 4670 5519;5520 5520 2358 SSPLSFPSVPQEETLR 16 Phospho (STY) _S(ph)SPLSFPSVPQEETLR_ S(0.494)S(0.494)PLS(0.013)FPSVPQEETLR S(0)S(0)PLS(-15.89)FPS(-42.58)VPQEET(-56.31)LR 0 0 1 0 Q9ULD5 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.350402832031 3 618.627546 1852.86081 39700.7853400649 1.6411 0.0010152 123480 76.388 123480 76.389 695.350270576219 84.488 0.47778 84.488 84.244 84.721 0 36 16 3 0.740666186804236 0.00191841885935451 0.0321052208444564 0.025409 1 19757 56.407 36.359 5 6994500 4833.9 6302.2 5441.4 5648.6 5094 5758.1 4814.2 5853.7 7544.4 9991.4 4576.3 5949.8 5439.4 5841.5 5188.6 5786.7 4988.7 6169 7328.3 9543.6 1 1 1 1 1 1 1 1 1 1 4975 2182 4384 4671 5521 5521 3945;3946 SSPNPFITGLTR 12 Phospho (STY) _SS(ph)PNPFITGLTR_ S(0.039)S(0.961)PNPFITGLTR S(-13.95)S(13.95)PNPFIT(-96.32)GLT(-113.12)R 0 0 1 0 O43426 O43426 O43426 SYNJ1 Synaptojanin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.912048339844 2 685.329217 1368.64388 35398.2011182577 1.8762 0.0012858 167190 114.58 167190 114.58 799.910388250423 83.528 0.5509 83.528 83.233 83.784 0 44 18 3 0.976121061863043 0.00218635873850913 0.0987329736245973 3.6236E-08 1 19513 174.02 92.719 4 13179000 10577 9775.8 10091 9831.5 11480 9535.2 13153 11504 10222 18973 10007 9235.1 10209 10086 11589 9631.3 13228 12035 10211 18131 1 1 1 1 1 1 1 1 1 1 4976 111 4385 4672 5522 5522 189 SSPNPFVGSPPK 12 Phospho (STY) _SSPNPFVGS(ph)PPK_ SSPNPFVGS(1)PPK S(-85.84)S(-85.84)PNPFVGS(85.84)PPK 0 0 1 0 P98082 P98082 P98082 DAB2 Disabled homolog 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 584.643249511719 3 431.867349 1292.58022 40808.8552309957 1.7489 0.00075528 353760 152.78 353760 152.78 584.977127407106 67.722 0.70717 67.722 67.416 68.124 0 56 23 3 0.89356961169853 0.00167720570420199 0.0188445284984567 0.00014057 1 15905 104.21 84.445 3 9709100 5775.5 6686.7 5604.9 7672.9 5695.1 5356.9 6339.6 6297.8 7602.3 2830.3 5464.5 6322.4 5656 7780.9 5784.4 5490 6456.8 6366 7447.6 2810.8 1 1 1 1 1 1 1 1 1 1 4977 817 4386 4673 5523 5523 1312 SSPNVANQPPSPGGK 15 Phospho (STY) _SSPNVANQPPS(ph)PGGK_ SSPNVANQPPS(1)PGGK S(-94.73)S(-94.73)PNVANQPPS(94.73)PGGK 0 0 1 0 P55196 P55196 P55196 MLLT4 Afadin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.007568359375 3 506.231239 1515.67189 37394.8378550138 2.0875 0.0010568 301790 152.77 301790 152.78 659.006782037576 41.17 0.82816 41.17 40.883 41.711 0 69 28 4 0.884986068753683 0.00315803033132045 0.0979897988762477 0.00011765 1 9367 112.43 94.513 3 28872000 10181 19317 10821 20104 12201 10333 12583 14959 21455 8499.8 9636.5 18253 10877 20437 12314 10868 13033 15082 20794 8349.8 1 1 1 1 1 1 1 1 1 1 4978 720 4387 4674 5524 5524 1200 SSPPAPPLPPGSGSPGTPQALPR 23 Phospho (STY) _S(ph)SPPAPPLPPGSGSPGTPQALPR_ S(0.499)S(0.499)PPAPPLPPGS(0.001)GSPGTPQALPR S(0)S(0)PPAPPLPPGS(-26.25)GS(-39.16)PGT(-55.6)PQALPR 0 0 1 0 Q9Y3L3 Q9Y3L3 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.761901855469 3 749.038609 2244.094 34107.0386856658 2.1243 0.0015912 101980 76.388 101980 76.389 825.76047021051 67.621 2.3686 67.621 66.978 69.346 0 258 80 5 0.994102181444903 0.0074463185128625 0.193022831372377 6.9089E-08 2 15965 142.3 119.76 5 52705000 15606 17382 17619 16698 24496 16527 26420 19544 18918 24565 14775 16417 17713 17184 24472 16657 26595 20228 18985 23583 2 2 2 2 2 2 2 2 2 2 4979 2268 4388 4675 5525;5526 5526 4196;4197;4198 SSPPAPPLPPGSGSPGTPQALPR 23 2 Phospho (STY) _SS(ph)PPAPPLPPGSGS(ph)PGTPQALPR_ S(0.468)S(0.532)PPAPPLPPGS(0.212)GS(0.492)PGT(0.295)PQALPR S(-0.56)S(0.56)PPAPPLPPGS(-3.65)GS(2.22)PGT(-2.22)PQALPR 0 0 2 0 Q9Y3L3 Q9Y3L3 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.416076660156 3 775.694052 2324.06033 33677.2758556996 1.5391 0.0011939 98477 76.388 98478 76.389 852.416705354835 71.108 1.1541 71.108 70.567 71.721 0 50 39 2 0.570971916277264 0.000316416780489635 0.00674234264772363 0.0059302 1 16671 90.518 71.128 10 14640000 4158.9 5226.3 5161 4986.9 5246.9 4173.1 5945.8 6306.8 5247.4 30580 3939.2 4935.7 5141.6 5121.9 5328.7 4303.6 5999.7 7164.9 5207.2 28941 1 1 1 1 1 1 1 1 1 1 4980 2268 4388 4676 5527 5527 4196;4197;4198 SSPPEGK 7 Acetyl (Protein N-term),Phospho (STY) _(ac)SS(ph)PPEGK_ S(0.43)S(0.57)PPEGK S(-1.22)S(1.22)PPEGK 1 0 1 0 P51397 P51397 P51397 DAP Death-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 526.746459960938 2 412.165309 822.316064 45348.9999352035 1.0476 0.00043178 278000 114.58 278000 114.58 526.746707500003 32.244 1.0043 32.244 31.674 32.679 0 55 33 2 0.760610835863062 0.000713385787145711 0.0111936934262974 0.03167 1 7209 48.283 40.063 2 7157900 8640.7 12531 9358.3 10857 10089 10079 9916.4 11569 12162 2808.9 8179 11828 9390.6 11237 10195 10162 10164 11632 11905 2912.7 1 1 1 1 1 1 1 1 1 1 4981 677 4389 4677 5528 5528 1134;1135 SSPPEGKLETK 11 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)SPPEGKLETK_ S(0.5)S(0.5)PPEGKLETK S(0)S(0)PPEGKLET(-43.68)K 1 0 1 1 P51397 P51397 P51397 DAP Death-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.313537597656 3 432.202397 1293.58536 41181.1203601901 1.689 0.00073001 353480 152.78 353480 152.78 584.977566641326 53.371 0.93082 53.371 53.043 53.974 7.1054E-15 77 31 3 0.981065635091106 0.00188036815289657 0.0111795130550931 0.019415 1 12468 55.452 38.127 3 17849000 12207 15312 11495 15727 15906 14258 16739 15696 16606 4453.3 11548 14467 11671 16099 15893 14384 16996 15823 16391 4556.6 1 1 1 1 1 1 1 1 1 1 4982 677 4390 4678 5529 5529 1134;1135 SSPPLPPPAEER 12 Phospho (STY) _S(ph)SPPLPPPAEER_ S(0.654)S(0.346)PPLPPPAEER S(2.76)S(-2.76)PPLPPPAEER 0 0 1 0 Q96RK0 Q96RK0 Q96RK0 CIC Protein capicua homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.396667480469 2 678.8134 1355.61225 34028.2832428008 1.8469 0.0012537 168800 114.58 168800 114.58 793.394776963025 50.016 1.2796 50.016 49.425 50.705 7.1054E-15 109 43 4 0.97505313669346 0.000653299248688437 0.0307419938104435 5.9194E-08 1 11535 172.74 88.686 2 18475000 16823 13964 17021 15848 14896 16335 15093 16906 14837 25278 15920 13202 17102 16166 15245 16406 15347 17697 14651 24194 1 1 1 1 1 1 1 1 1 1 4983 1737 4391 4679 5530 5530 3190 SSPPLRTPDVLESSGPAVR 19 Phospho (STY) _S(ph)SPPLRTPDVLESSGPAVR_ S(0.49)S(0.49)PPLRT(0.02)PDVLESSGPAVR S(0)S(0)PPLRT(-13.94)PDVLES(-36.32)S(-36.03)GPAVR 0 0 1 1 O75676 O75676 O75676 RPS6KA4 Ribosomal protein S6 kinase alpha-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.060913085938 3 682.340288 2043.99903 37093.1182958397 2.471 0.0016861 111950 76.387 111950 76.388 759.060544747412 68.315 0.54856 68.315 68.035 68.584 0 61 18 4 0.654455363164434 0.00403401397264569 0.129515978662146 0.035039 1 16021 50.189 24.645 5 21932000 12093 7071.5 13682 8469.6 10005 12670 8661.5 10724 6928 9634.9 11449 6688.1 13638 8678.5 10349 12506 8833.7 11123 6909.4 9320.6 1 1 1 1 1 1 1 1 1 1 4984 198 4392 4680 5531 5531 347;348 SSPPPGYVPER 11 Phospho (STY) _S(ph)SPPPGYVPER_ S(0.888)S(0.112)PPPGYVPER S(9.01)S(-9.01)PPPGY(-107.62)VPER 0 0 1 0 Q99759 Q99759 Q99759 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.863586425781 2 633.281735 1264.54892 36805.3378554523 1.7218 0.0010904 180930 114.58 180930 114.58 747.863341245926 44.308 0.86354 44.308 43.934 44.798 7.1054E-15 69 29 4 0.961461219640967 0.000491047247924033 0.00868048530627305 1.0866E-06 1 10178 147.24 79.252 3 15632000 11042 13266 11489 12418 16708 11414 19392 14021 13231 7655.7 10450 12527 11612 12786 16679 11533 19442 14194 13317 7533.3 1 1 1 1 1 1 1 1 1 1 4985 1790 4393 4681 5532 5532 3299 SSPQKEVK 8 Phospho (STY) _SS(ph)PQKEVK_ S(0.038)S(0.962)PQKEVK S(-13.98)S(13.98)PQKEVK 0 0 1 1 P54578 P54578 P54578 USP14 Ubiquitin carboxyl-terminal hydrolase 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.480407714844 2 491.73389 981.453226 34547.5937335455 1.4647 0.00072023 699050 343.74 699050 343.75 835.47895796529 37.046 0.25791 37.046 36.925 37.183 0 18 8 3 0.964290072939817 0.00048275112753454 0.0198213166750556 0.00031351 1 8369 131.12 91.179 2 4708700 11120 17450 11119 17393 11587 11006 12596 13157 19553 4401.1 10522 16484 11204 17759 11752 11352 12964 13247 18998 4448.7 1 1 1 1 1 1 1 1 1 1 4986 711 4394 4682 5533 5533 1192;1193 SSPQLDPLR 9 Phospho (STY) _S(ph)SPQLDPLR_ S(0.5)S(0.5)PQLDPLR S(0)S(0)PQLDPLR 0 0 1 0 Q8ND56 Q8ND56 Q8ND56 LSM14A Protein LSM14 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.339782714844 2 546.757896 1091.50124 37453.9464036251 1.8071 0.00098804 209570 114.58 209570 114.58 661.340034306837 61.747 0.78931 61.747 61.247 62.036 0 48 26 3 0.691460104464381 0.0034668299162611 0.0897427829718033 7.8878E-06 1 14499 143 90.27 2 53205000 31041 27188 31345 33854 33298 32133 34993 32082 32842 7088.4 29374 25722 31573 34326 33697 32298 35479 32396 32497 7417.1 1 1 1 1 1 1 1 1 1 1 4987 1502 4395 4683 5534 5534 2758;2759 SSPQLDPLRK 10 Phospho (STY) _SS(ph)PQLDPLRK_ S(0.141)S(0.859)PQLDPLRK S(-7.86)S(7.86)PQLDPLRK 0 0 1 1 Q8ND56 Q8ND56 Q8ND56 LSM14A Protein LSM14 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 560.314636230469 3 407.539344 1219.5962 41925.3836179815 1.47 0.00059908 374870 152.78 374870 152.78 560.314469060884 61.505 1.4526 61.505 61.039 62.492 0 138 49 5 0.946301200796986 0.0056528882484114 0.0885058181170346 0.00014444 1 14368 121.56 86.017 2 259460000 22316 16597 24323 17298 14720 21038 14805 16806 17115 2984.8 21124 15683 24259 17779 15508 20874 15130 17111 16790 3199.5 1 1 1 1 1 1 1 1 1 1 4988 1502 4396 4684 5535 5535 2758;2759 SSPRPTAEK 9 Phospho (STY) _SS(ph)PRPTAEK_ S(0.256)S(0.744)PRPTAEK S(-4.64)S(4.64)PRPT(-42.23)AEK 0 0 1 1 Q9UHB7 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 504.272674560547 3 351.497256 1051.46994 44439.1068447445 1.1228 0.00039467 434640 152.78 434640 152.78 504.272470915524 28.898 0.58169 28.898 28.609 29.191 3.5527E-15 48 19 3 0.825753310518512 0.00207803158808457 0.0190296640990194 0.0097692 1 6411 69.554 53.673 3 15359000 11476 13099 9896.5 14779 12267 10220 12460 13065 13960 4692.9 10853 12384 10085 14998 12313 10492 12715 13136 13711 4721.3 1 1 1 1 1 1 1 1 1 1 4989 2145 4397 4685 5536 5536 3865 SSPSKCPSLDDR 12 Phospho (STY) _SS(ph)PSKCPSLDDR_ S(0.448)S(0.551)PS(0.001)KCPSLDDR S(-0.9)S(0.9)PS(-26.21)KCPS(-44.87)LDDR 0 0 1 1 P38398 P38398 P38398 BRCA1 Breast cancer type 1 susceptibility protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.642150878906 3 476.865679 1427.57521 39161.816704259 1.5398 0.00073428 320370 152.78 320380 152.78 629.976102911882 39.567 0.8108 39.567 39.022 39.833 0 65 27 4 0.652643304563922 0.00187153753223136 0.0219665747556321 0.0068451 1 8987 80.706 53.924 4 17511000 24532 18689 21494 20888 21042 24694 17089 21503 17747 5351.4 23203 17667 21805 21374 21325 24552 17603 21854 17483 5536.6 1 1 1 1 1 1 1 1 1 1 4990 562 4398 4686 5537 5537 912 SSPSKDR 7 Phospho (STY) _SS(ph)PSKDR_ S(0.135)S(0.865)PSKDR S(-8.06)S(8.06)PS(-45.91)KDR 0 0 1 1 Q9BUQ8 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.846801757813 2 428.681657 855.348761 38851.3521409676 2.7403 0.0011747 534580 229.16 534580 229.16 657.845110645815 23.338 0.29091 23.338 23.207 23.498 0 15 9 2 0.981538648424289 0.00134261753638889 0.0415570601350663 0.0084678 1 5241 89.355 8.0584 3 2967400 2161.5 2974.7 2761.1 2698.3 3083 2222.2 2780 2586.3 3036 2312.5 2047.6 2808.5 2749.2 2779.7 3105.6 2257.6 2851.4 2649.8 2984.8 2237.3 1 1 1 1 1 1 1 1 1 1 4991 1835 4399 4687 5538 5538 3361;3362 SSPSPEVVKPK 11 Phospho (STY) _SSPS(ph)PEVVKPK_ S(0.039)S(0.174)PS(0.787)PEVVKPK S(-13.08)S(-6.56)PS(6.56)PEVVKPK 0 0 1 1 Q15652 Q15652 Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.372314453125 3 412.207483 1233.60062 40052.6243719318 2.4268 0.0010004 555940 229.16 555950 229.16 641.371798748834 49.095 0.45876 49.095 48.824 49.283 0 39 15 3 0.859591184359247 0.00297954410944438 0.0630489454716009 0.00016265 1 11404 103.83 73.006 3 26092000 28128 18724 28340 18982 14544 30999 13490 21021 20720 5571.8 26617 17690 28354 19667 15566 30421 13980 21640 20138 5733 1 1 1 1 1 1 1 1 1 1 4992 1086 4400 4688 5539 5539 1886 SSPVESLKK 9 Phospho (STY) _S(ph)SPVESLKK_ S(0.5)S(0.5)PVESLKK S(0)S(0)PVES(-60.89)LKK 0 0 1 1 Q9NRA8 Q9NRA8 Q9NRA8 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.341369628906 3 352.177524 1053.51074 41156.6722100662 1.9125 0.00067353 650700 229.16 650700 229.16 581.340566501671 54.159 0.67275 54.159 53.801 54.473 0 83 22 5 0.91129804503232 0.00848458298490331 0.123587906773624 0.00044575 1 12596 103.7 79.545 3 138230000 43356 32537 44688 32025 48240 42457 51731 44952 30939 3845.4 41031 30734 44972 33081 48774 42130 51921 45110 31409 4661.2 1 1 1 1 1 1 1 1 1 1 4993 2014 4401 4689 5540 5540 3661;3662 SSPVLQHK 8 Phospho (STY) _SS(ph)PVLQHK_ S(0.149)S(0.851)PVLQHK S(-7.55)S(7.55)PVLQHK 0 0 1 0 Q3V6T2 Q3V6T2 Q3V6T2 CCDC88A Girdin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 478.601989746094 3 325.826825 974.458646 45378.8993816612 1.1047 0.00035995 468880 152.78 468890 152.78 478.602073567176 39.035 0.38218 39.035 38.844 39.226 0 31 12 3 0.983144743894706 0.00141934537165331 0.020528494246084 0.00025603 1 8855 129.16 85.714 2 10651000 8193.3 9294.7 8820.8 10308 14463 8189.4 15354 11963 10150 1381.2 7755.3 8786.1 8916.7 10488 14351 8353.2 15444 11896 10236 1577.4 1 1 1 1 1 1 1 1 1 1 4994 1131 4402 4690 5541 5541 1971 SSPVNNHHSPGQTPTLGQPEAR 22 2 Phospho (STY) _SS(ph)PVNNHHS(ph)PGQTPTLGQPEAR_ S(0.383)S(0.617)PVNNHHS(0.992)PGQT(0.007)PT(0.001)LGQPEAR S(-2.07)S(2.07)PVNNHHS(21.8)PGQT(-21.8)PT(-29.64)LGQPEAR 0 0 2 0 Q5SW79;Q96L14 Q5SW79 Q5SW79 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.078491210938 3 824.35487 2470.04278 33754.6974921391 2.0627 0.0017004 92663 76.388 92665 76.389 901.076793647741 38.408 0.31358 38.408 38.211 38.524 0 34 10 4 0.964644138963726 0.00130530508303874 0.0134828977750803 1.3552E-11 1 8693 181.02 149.1 10 9737900 4696.4 4954.3 4457.9 4361.4 5222.7 5917 5709.6 5924 5397.3 2758.1 4443.1 4676.8 4512.8 4539.4 5261.4 5866.8 5779.9 6025 5338.8 2734.2 1 1 1 1 1 1 1 1 1 1 4995 1180 4403 4691 5542 5542 2050;2051 SSPVNRPSSATNK 13 Phospho (STY) _SS(ph)PVNRPSSATNK_ S(0.155)S(0.845)PVNRPSSATNK S(-7.36)S(7.36)PVNRPS(-94.65)S(-100.43)AT(-107.94)NK 0 0 1 1 Q96L91 Q96L91 Q96L91 EP400 E1A-binding protein p400 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.332946777344 3 475.555834 1423.64567 39158.828392334 1.9425 0.00092376 321260 152.78 321260 152.78 628.665487825862 29.753 0.34719 29.753 29.606 29.954 3.5527E-15 39 11 4 0.981381802151255 0.00527319478299913 0.0543087783119876 5.3651E-07 1 6629 144.97 89.713 5 40972000 17466 20933 18704 21039 16661 18151 18891 18829 22602 2159.5 16532 19775 18742 21549 17063 18335 19224 18926 22144 2469.2 1 1 1 1 1 1 1 1 1 1 4996 1710 4404 4692 5543 5543 3153 SSPVPEMLEESQELLEPVVDDVPK 24 Phospho (STY) _S(ph)SPVPEMLEESQELLEPVVDDVPK_ S(0.5)S(0.5)PVPEMLEESQELLEPVVDDVPK S(0)S(0)PVPEMLEES(-32.55)QELLEPVVDDVPK 0 0 1 0 Q5VZ89 Q5VZ89 Q5VZ89 DENND4C DENN domain-containing protein 4C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1069.54553222656 3 916.09753 2745.27076 33404.7815700212 1.4686 0.0013453 166770 152.78 166770 152.78 1069.54324473945 102.35 0.14729 102.35 102.28 102.42 0 6 4 2 1 0.00020583376580125 0.00345395578496201 0.0033092 1 24121 92.95 72.136 3 18866000 3552.2 3732.6 3775.6 3979.2 5251.5 4724 3975.4 7062.9 5024.7 61552 3362.1 3527.5 3804.6 4082.7 5225 4847.1 4136.7 8848.7 4913.4 58122 1 1 1 1 1 1 1 1 1 1 4997 1214 4405 4693 5544 5544 2135;2136 SSQFGSLEF 9 Phospho (STY) _SSQFGS(ph)LEF_ SSQFGS(1)LEF S(-90.41)S(-90.41)QFGS(90.41)LEF 0 0 1 0 Q8NHZ8 Q8NHZ8 Q8NHZ8 CDC26 Anaphase-promoting complex subunit CDC26 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.798156738281 2 541.21553 1080.41651 38839.0414871437 2.0473 0.001108 211710 114.58 211710 114.58 655.796860531248 95.822 1.0112 95.822 95.479 96.491 0 102 34 4 0.889878117727669 0.00305909545080599 0.141717180423828 6.7047E-07 1 22252 173.24 168.08 3 48344000 3166.1 2355.2 2190.3 3673 3718.8 2317 3087.8 3537.6 3024.4 7591.9 2992.3 2232.4 2279.1 3669.1 3674.6 2412.6 3171.7 3729.9 2986.9 7230.6 1 1 1 1 1 1 1 1 1 1 4998 1529 4406 4694 5545 5545 2807 SSQPLASK 8 Phospho (STY) _S(ph)SQPLASK_ S(0.81)S(0.19)QPLASK S(6.3)S(-6.3)QPLAS(-104.98)K 0 0 1 0 P17096 P17096 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 452.583160400391 3 299.807431 896.400462 46479.6214777778 0.7022 0.00021053 509580 152.78 509580 152.78 452.582851900421 44.591 0.54388 44.591 44.315 44.859 0 53 18 4 0.920402656696545 0.00237546153935012 0.047095185136535 0.00066587 1 10229 112.59 88.436 3 28546000 15540 18163 15379 18559 51483 15288 51134 28642 21006 1372.3 14704 17160 15936 18979 50080 15640 51242 28253 22005 1955 1 1 1 1 1 1 1 1 1 1 4999 415 4407 4695 5546 5546 674 SSQSSSQQFSGIGR 14 Phospho (STY) _S(ph)SQSSSQQFSGIGR_ S(0.379)S(0.087)QS(0.379)S(0.137)S(0.018)QQFSGIGR S(0)S(-6.37)QS(0)S(-4.41)S(-13.22)QQFS(-56.2)GIGR 0 0 1 0 Q92841 Q92841 Q92841 DDX17 Probable ATP-dependent RNA helicase DDX17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.906127929688 2 768.327934 1534.64131 31633.6416090689 1.6788 0.0012899 149130 114.58 149130 114.58 882.907694167306 46.387 0.46501 46.387 46.109 46.574 0 45 15 4 0.959062453474276 0.000586200157600969 0.00553989641117734 9.6844E-07 1 10742 151.55 112.26 6 29848000 11281 11922 12202 10511 22795 10271 25337 14499 10937 6854.4 10678 11254 12368 10874 22529 10372 25274 14586 11402 6789.8 1 1 1 1 1 1 1 1 1 1 5000 1626 4408 4696 5547 5547 3007;3008 SSRPASPCNK 10 Phospho (STY) _SSRPAS(ph)PCNK_ S(0.001)S(0.001)RPAS(0.998)PCNK S(-29.16)S(-29.16)RPAS(29.16)PCNK 0 0 1 1 O95644 O95644 O95644 NFATC1 Nuclear factor of activated T-cells, cytoplasmic 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.945190429688 3 395.169034 1182.48527 41055.0025385205 1.4358 0.00056736 386610 152.78 386610 152.78 547.944959103838 26.321 0.35228 26.321 26.131 26.483 0 29 11 4 0.867275862838315 0.00329505731278284 0.0440395647340711 0.01033 1 5864 67.964 38.156 3 11297000 9070.5 6973.1 10200 6812.1 5462.4 9475.5 6850.5 8497.7 7686 2908.3 8587.2 6586.3 10150 7047.1 5843.4 9372.1 6929.4 8649.3 7548.3 2935.2 1 1 1 1 1 1 1 1 1 1 5001 255 4409 4697 5548 5548 428 SSRSSPELTRK 11 2 Phospho (STY) _SS(ph)RSS(ph)PELTRK_ S(0.164)S(0.835)RS(0.215)S(0.768)PELT(0.017)RK S(-7.1)S(7.1)RS(-5.56)S(5.56)PELT(-16.65)RK 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.64892578125 3 469.872484 1406.59562 39065.2670025882 0.93012 0.00043704 325140 152.78 325140 152.78 622.982411853067 34.876 0.75193 34.876 34.579 35.33 0 74 25 4 0.878850852973621 0.00434413542569652 0.0591316222752813 0.013382 2 7824 66.826 41.505 10 28956000 35152 27635 36198 29441 29122 34833 24408 28466 29724 6241.2 33267 26116 36294 30205 29909 34606 25217 28989 29103 6535.6 2 2 2 2 2 2 2 2 2 2 5002 2226 4410 4698 5549;5550 5550 4070;4071;4072 SSSAAALWMEEGLPAQNAPGTL 22 Phospho (STY) _S(ph)SSAAALWMEEGLPAQNAPGTL_ S(0.333)S(0.333)S(0.333)AAALWMEEGLPAQNAPGTL S(0)S(0)S(0)AAALWMEEGLPAQNAPGT(-77.68)L 0 0 1 0 Q9Y227 Q9Y227 Q9Y227 ENTPD4 Ectonucleoside triphosphate diphosphohydrolase 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.399841308594 3 761.011731 2280.01336 33003.6365571121 0.94063 0.00071583 100380 76.388 100380 76.388 837.400148538084 101.56 0.14185 101.56 101.47 101.61 0 14 4 4 0.984259021423874 0.00134243854014462 0.0765657505702682 0.008673 1 23894 78.758 69.662 4 32026000 5618.5 6449.9 6462.8 6965.1 6800.5 6146.8 6018.4 8897 6465 50041 5319.8 6095.9 6461.8 7106.9 6870.6 6326.5 6176.1 10326 6360.1 47325 1 1 1 1 1 1 1 1 1 1 5003 2235 4411 4699 5551 5551 4131;4132;4133 SSSAASMAEEEASAVSTAAAQFTK 24 Oxidation (M),Phospho (STY) _SSS(ph)AASM(ox)AEEEASAVSTAAAQFTK_ SSSAASM(1)AEEEASAVSTAAAQFTK S(0.303)S(0.303)S(0.347)AAS(0.048)MAEEEASAVSTAAAQFTK SSSAASM(90.53)AEEEASAVSTAAAQFTK S(-0.59)S(-0.59)S(0.59)AAS(-8.61)MAEEEAS(-54.59)AVS(-65.51)T(-65.13)AAAQFT(-88.09)K 0 1 1 0 Q9HCK8 Q9HCK8 Q9HCK8 CHD8 Chromodomain-helicase-DNA-binding protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 963.463684082031 3 810.012236 2427.01488 31847.7196278024 1.5528 0.0012578 188610 152.78 188610 152.78 963.46048952272 99.335 0.17337 99.335 99.264 99.438 0 14 5 3 0.836698437111415 0.00174361371780127 0.0910583498210489 0.004425 1 23084 90.534 73.849 8 13036000 4863.2 6391.6 6680.4 6347.6 7040.1 6786 6897.5 7215.4 5974.2 52390 4608.6 6037.7 6626.4 6527.3 7120.2 6886.5 7002.6 8799.5 5933.9 49499 1 1 1 1 1 1 1 1 1 1 5004 1989 4412 4700 5552 5552 211 3613 SSSADSLSTTK 11 Phospho (STY) _S(ph)SSADSLSTTK_ S(0.506)S(0.011)S(0.483)ADSLSTTK S(0.2)S(-16.52)S(-0.2)ADS(-30.15)LS(-70.31)T(-81.36)T(-95.9)K 0 0 1 0 Q9UQ84 Q9UQ84 Q9UQ84 EXO1 Exonuclease 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.411315917969 2 582.245015 1162.47548 34871.4428004495 1.8862 0.0010982 393590 229.16 393590 229.17 811.408878619558 43.302 0.40263 43.302 43.09 43.492 -7.1054E-15 33 13 3 0.992003424237812 0.00155949866230653 0.0303518435777195 3.166E-21 1 9897 260.97 224.65 7 35784000 34733 35267 34960 36227 26941 33837 28816 33783 40053 6003.5 32867 33321 35095 37100 27851 34034 29550 34070 39044 6434.9 1 1 1 1 1 1 1 1 1 1 5005 2228 4413 4701 5553 5553 4119 SSSAGPEGPQLDVPR 15 Phospho (STY) _SSS(ph)AGPEGPQLDVPR_ S(0.003)S(0.003)S(0.994)AGPEGPQLDVPR S(-25.11)S(-25.11)S(25.11)AGPEGPQLDVPR 0 0 1 0 O75081 O75081 O75081 CBFA2T3 Protein CBFA2T3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 903.435729980469 2 788.853784 1575.69302 32861.7660330936 1.8942 0.0014943 145250 114.58 145250 114.58 903.43507422743 57.265 0.74647 57.265 57.014 57.76 0 76 25 4 0.938525695395144 0.00299711612845377 0.0993333003429648 4.429E-33 1 13372 324.96 295.89 3 54116000 10350 17678 10564 17618 30646 9992 31152 22616 18354 25981 9794.7 16699 10872 17971 29909 10563 31335 22980 18653 24988 1 1 1 1 1 1 1 1 1 1 5006 166 4414 4702 5554 5554 286 SSSAPLIHGLSDLSQVFQPYTLR 23 Phospho (STY) _SSS(ph)APLIHGLSDLSQVFQPYTLR_ S(0.003)S(0.02)S(0.977)APLIHGLSDLSQVFQPYTLR S(-24.55)S(-16.91)S(16.91)APLIHGLS(-135.62)DLS(-189.14)QVFQPY(-291.72)T(-296.61)LR 0 0 1 0 Q7Z309 Q7Z309 Q7Z309 FAM122B Protein FAM122B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 942.820678710938 3 866.098416 2595.27342 32064.2017009913 1.1533 0.00099884 88196 76.387 88198 76.388 942.819522785524 101.72 0.20286 101.72 101.58 101.79 0 15 6 4 0.904190877510397 0.0100147439364004 0.295819406248216 1.7937E-54 1 23935 383.36 366.21 7 109560000 19032 27177 23232 25686 21675 29248 37721 37558 29228 149630 18025 25664 23163 26522 22307 29543 37394 41860 29200 141760 1 1 1 1 1 1 1 1 1 1 5007 1329 4415 4703 5555 5555 2390 SSSAPNVHINTIEPVNIDDLIR 22 Phospho (STY) _S(ph)SSAPNVHINTIEPVNIDDLIR_ S(0.363)S(0.363)S(0.275)APNVHINTIEPVNIDDLIR S(0)S(0)S(-1.21)APNVHINT(-120.88)IEPVNIDDLIR 0 0 1 0 P15056 P15056 P15056 BRAF Serine/threonine-protein kinase B-raf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 905.465087890625 3 828.742521 2483.20573 32687.455861029 1.7614 0.0014598 92172 76.387 92174 76.388 905.464173964642 97.601 0.80694 97.601 97.243 98.05 0 104 27 5 0.790921100324373 0.0241946333126945 0.552825349490078 5.8755E-17 1 22656 227.25 201.12 4 86446000 9603.4 16765 11172 18522 12480 12461 15276 19830 18025 95556 9093.2 15847 11181 18813 12630 13033 15490 22485 17669 90437 1 1 1 1 1 1 1 1 1 1 5008 394 4416 4704 5556 5556 627;628 SSSASSPEMK 10 Oxidation (M),Phospho (STY) _SSS(ph)ASSPEM(ox)K_ SSSASSPEM(1)K S(0.002)S(0.034)S(0.918)AS(0.045)S(0.001)PEMK SSSASSPEM(116.75)K S(-26.64)S(-14.28)S(13.05)AS(-13.05)S(-32.01)PEMK 0 1 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.867126464844 2 553.707212 1105.39987 36010.2751298912 2.3816 0.0013187 413860 229.16 413870 229.16 782.866705552423 30.053 0.53896 30.053 29.866 30.405 3.5527E-15 25 17 2 0.604368759914568 0.000398998328497974 0.017255919911059 0.00023069 1 6734 116.75 86.99 5 7296900 16246 9129.5 14678 10788 8638.9 15463 8851 9835.1 9944.8 3111 15367 8633.8 14797 11050 9127.4 15226 9029.3 10177 9766.1 3157 1 1 1 1 1 1 1 1 1 1 5009 2226 4417 4705 5557 5557 243 4107 SSSASSPEMK 10 Phospho (STY) _SSS(ph)ASSPEMK_ SSS(0.998)AS(0.001)SPEMK S(-36.26)S(-40.39)S(28.39)AS(-28.39)S(-59.71)PEMK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.874450683594 2 545.709754 1089.40496 35602.4509583373 2.033 0.0011094 419940 229.16 419940 229.16 774.872752130571 39.405 0.60258 39.405 39.112 39.715 -7.1054E-15 58 20 4 0.991449145726138 0.00198962975791592 0.0817048777504099 1.0782E-20 1 8916 261.83 179.83 5 70435000 46501 27181 49894 26033 18597 46839 21316 34196 26425 7403.2 44015 25670 49667 27135 20763 45876 21707 35014 25857 7762.4 1 1 1 1 1 1 1 1 1 1 5010 2226 4417 4706 5558 5558 4107 SSSESYTQSFQSR 13 Phospho (STY) _SSSES(ph)YTQSFQSR_ SS(0.001)S(0.116)ES(0.883)YTQSFQSR S(-46.09)S(-30.53)S(-8.83)ES(8.83)Y(-88.76)T(-34.86)QS(-70.42)FQS(-143.38)R 0 0 1 0 Q9BTU6 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.402160644531 2 787.311949 1572.60935 33512.8860884869 1.338 0.0010534 145540 114.58 145540 114.58 901.89278807155 46.502 0.45934 46.502 46.228 46.687 0 51 15 4 0.527265706689286 0.00129282407015062 0.0371303999611923 7.6922E-11 1 10709 201.48 151.99 8 47287000 43418 22379 44541 23815 23134 46435 23197 31147 25239 6939.9 41089 21149 44524 24729 24743 45356 23665 32045 24816 7255.6 1 1 1 1 1 1 1 1 1 1 5011 1827 4418 4707 5559 5559 3344 SSSETILSSLAGSDIVK 17 Phospho (STY) _S(ph)SSETILSSLAGSDIVK_ S(0.333)S(0.333)S(0.333)ET(0.002)ILSSLAGSDIVK S(0)S(0)S(0)ET(-22.78)ILS(-108.43)S(-143.23)LAGS(-227.38)DIVK 0 0 1 0 Q01850 Q01850 Q01850 CDR2 Cerebellar degeneration-related protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.731628417969 3 591.95544 1772.84449 36264.3117634217 1.9918 0.0011791 258090 152.77 258090 152.78 745.064897894186 100.01 0.1656 100.01 99.92 100.09 1.4211E-14 18 5 4 0.930563084921151 0.00882994433478963 0.174324799581802 9.4851E-23 1 23316 261.66 187.04 7 89149000 18259 31013 18271 27236 18532 18633 19832 23646 34280 23180 17278 29275 18402 28057 18823 19167 20521 24223 33211 22374 1 1 1 1 1 1 1 1 1 1 5012 845 4419 4708 5560 5560 1363;1364;1365 SSSFGNFDR 9 Phospho (STY) _SSS(ph)FGNFDR_ S(0.067)S(0.067)S(0.866)FGNFDR S(-11.12)S(-11.12)S(11.12)FGNFDR 0 0 1 0 Q9NSI8 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.290893554688 2 548.708403 1095.40225 37877.063604308 1.83 0.0010041 208820 114.58 208820 114.58 663.290376449444 56.949 1.2477 56.949 56.572 57.82 7.1054E-15 156 42 6 0.89672138740575 0.0204165580921039 0.57062892783432 2.8372E-09 1 13267 194.52 127.9 3 1615600000 38718 131210 39489 136030 245060 36581 267260 138460 122510 17259 36640 123980 42278 137780 236730 42416 267020 135460 127020 19456 1 1 1 1 1 1 1 1 1 1 5013 2028 4420 4709 5561 5561 3687 SSSFKDFAK 9 Phospho (STY) _SSS(ph)FKDFAK_ S(0.025)S(0.16)S(0.814)FKDFAK S(-15.09)S(-7.06)S(7.06)FKDFAK 0 0 1 1 O75995 O75995 O75995 SASH3 SAM and SH3 domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.32666015625 3 366.161873 1095.46379 40409.5299852749 1.8228 0.00066743 625850 229.16 625850 229.16 595.325008797282 65.168 1.1373 65.168 64.851 65.988 0 138 38 6 0.964803563829308 0.00596029906454779 0.0653602196850475 0.0041748 1 15267 88.552 59.009 3 183290000 24966 7454.9 26082 7707.4 86985 24633 93021 40992 4035.5 8253.3 23628 7043.9 26956 8170.3 84678 24156 91960 40733 7756 8720.2 1 1 1 1 1 1 1 1 1 1 5014 208 4421 4710 5562 5562 363;364 SSSFKDFAK 9 2 Phospho (STY) _SS(ph)S(ph)FKDFAK_ S(0.602)S(0.727)S(0.671)FKDFAK S(-0.83)S(1.64)S(0.83)FKDFAK 0 0 2 1 O75995 O75995 O75995 SASH3 SAM and SH3 domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.315734863281 3 392.817317 1175.43012 39924.3301815009 1.9841 0.0007794 583380 229.16 583380 229.16 621.980334073721 71.542 2.0663 71.542 70.683 72.749 0 91 70 2 0.846681812452581 0.00120324802329465 0.0518033662357694 0.023241 1 16745 56.951 27.611 3 9561900 7664.1 4473.4 10019 4112.2 13994 9715.2 13932 9694.4 4126.1 6465.9 7261.1 4223.8 10002 4334.4 13956 9499.9 13916 9919.9 4487.1 6312.8 1 1 1 1 1 1 1 1 1 1 5015 208 4421 4711 5563 5563 363;364 SSSFSLPSR 9 Phospho (STY) _SSS(ph)FSLPSR_ S(0.005)S(0.002)S(0.991)FS(0.001)LPSR S(-22.66)S(-26.11)S(22.66)FS(-29.43)LPS(-100.78)R 0 0 1 0 Q14153 Q14153 Q14153 FAM53B Protein FAM53B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.811401367188 2 524.228971 1046.44339 39318.7330753634 1.6266 0.00085271 218570 114.58 218570 114.58 638.810318272834 57.694 0.89834 57.694 57.363 58.262 0 72 30 4 0.936832613132169 0.00428485367091491 0.43424364426888 1.6829E-07 1 13469 175.34 82.895 5 59218000 23742 15440 26966 14903 16902 25849 15757 18381 14394 4401.6 22478 14583 26843 15511 17728 25336 16057 18859 14260 4570 1 1 1 1 1 1 1 1 1 1 5016 990 4422 4712 5564 5564 1673 SSSGTPDLPVLLTDLK 16 Acetyl (Protein N-term),Phospho (STY) _(ac)SSSGT(ph)PDLPVLLTDLK_ S(0.236)S(0.236)S(0.236)GT(0.291)PDLPVLLTDLK S(-0.91)S(-0.91)S(-0.91)GT(0.91)PDLPVLLT(-57.54)DLK 1 0 1 0 P00352 P00352 P00352 ALDH1A1 Retinal dehydrogenase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 998.025573730469 2 882.936983 1763.85941 32220.0969941109 1.7897 0.0015802 129770 114.58 129770 114.58 997.516916598149 103.58 0.25476 103.58 103.49 103.75 -1.4211E-14 16 8 3 NaN 0 0 0.0095728 1 24426 74.76 49.374 5 8411000 2364.9 2368.5 2561.8 2096.9 4049.5 3106.3 4790.2 3053.3 3700.6 46688 2238.5 2235.9 2587.9 2185.8 4031 3155.8 4810.6 4471.5 3697.6 44033 1 1 1 1 1 1 1 1 1 1 5017 278 4423 4713 5565 5565 4362 SSSISEEKGDSDDEKPR 17 Phospho (STY) _SSSISEEKGDS(ph)DDEKPR_ SSSISEEKGDS(1)DDEKPR S(-107.51)S(-107.59)S(-92.27)IS(-58.33)EEKGDS(58.33)DDEKPR 0 0 1 2 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 878.767272949219 3 649.272268 1944.79497 34246.5068629548 2.4608 0.0015978 352950 229.16 352960 229.16 878.435393876089 38.5 0.8164 38.5 38.325 39.141 0 73 27 4 0.731220748288339 0.00388397120021677 0.0488054080748593 6.2996E-11 1 8721 201.32 165.4 5 37452000 33315 45232 35320 45889 41710 36352 47815 45887 49995 9848.5 31532 42733 35539 46924 42038 37002 48438 45955 49237 10336 1 1 1 1 1 1 1 1 1 1 5018 2180 4424 4714 5566 5566 3941 SSSKESLVR 9 Phospho (STY) _S(ph)SSKESLVR_ S(0.393)S(0.303)S(0.303)KES(0.001)LVR S(1.13)S(-1.13)S(-1.13)KES(-26.59)LVR 0 0 1 1 Q13439 Q13439 Q13439 GOLGA4 Golgin subfamily A member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 510.947845458984 3 358.172661 1071.49615 44461.6257091475 1.4082 0.00050439 426540 152.78 426540 152.78 510.948316065533 42.202 0.39855 42.202 41.938 42.337 0 25 13 2 0.878443239453734 0.00298799754300233 0.0554329545674495 0.0043153 1 9621 88.075 38.627 4 36776000 11979 19938 12594 20753 14739 12729 15063 15301 22588 1889.5 11338 18839 12673 21130 14842 13153 15523 15306 21968 2133.3 1 1 1 1 1 1 1 1 1 1 5019 955 4425 4715 5567 5567 1603 SSSKGSVEEIMSQPK 15 Phospho (STY) _SS(ph)SKGSVEEIMSQPK_ S(0.11)S(0.523)S(0.366)KGS(0.001)VEEIMSQPK S(-6.76)S(1.54)S(-1.54)KGS(-27.54)VEEIMS(-121.49)QPK 0 0 1 1 Q8IWB9 Q8IWB9 Q8IWB9 TEX2 Testis-expressed sequence 2 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.086608886719 3 558.586582 1672.73792 35016.9153349237 2.2574 0.001261 410260 229.16 410260 229.16 788.084040883252 67.12 0.72228 67.12 66.836 67.559 1.4211E-14 87 24 6 0.971000792465949 0.00749920284843673 0.0966468011661511 6.0248E-16 2 15742 229.15 170.94 5 54477000 51392 23464 52120 23981 51461 54642 56950 48489 26017 19445 48633 22168 52442 25084 52310 53361 56859 49462 26983 19432 2 2 2 2 2 2 2 2 2 2 5020 1414 4426 4716 5568;5569 5569 2576 SSSLDMNR 8 Oxidation (M),Phospho (STY) _SSS(ph)LDM(ox)NR_ SSSLDM(1)NR S(0.076)S(0.198)S(0.726)LDMNR SSSLDM(46.03)NR S(-9.79)S(-5.65)S(5.65)LDMNR 0 1 1 0 Q96D71 Q96D71 Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.7705078125 2 503.188989 1004.36343 39997.326190088 1.127 0.00056711 227710 114.58 227710 114.58 617.769920175971 27.248 0.46413 27.248 27.002 27.466 -3.5527E-15 40 15 3 0.686682699040737 0.00217402647760368 0.0273091286141688 0.05164 1 6056 46.033 38.093 3 23730000 13347 10050 12209 10553 12072 14672 21152 14060 9644.4 3732 12625 9496.7 12374 10871 12376 14522 20780 14240 10004 3839.6 1 1 1 1 1 1 1 1 1 1 5021 1666 4427 4717 5570 5570 196 3065 SSSLDMNR 8 Phospho (STY) _SSS(ph)LDMNR_ S(0.03)S(0.07)S(0.9)LDMNR S(-14.83)S(-11.07)S(11.07)LDMNR 0 0 1 0 Q96D71 Q96D71 Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.773742675781 2 495.191532 988.36851 40089.2409164616 1.2334 0.00061075 231390 114.58 231390 114.58 609.772867047083 37.653 0.59585 37.653 37.44 38.035 -7.1054E-15 58 20 4 0.970531358336016 0.00432661001670233 0.0256899591531893 1.6583E-05 1 8497 157.75 111.28 3 113660000 41107 24418 37115 24096 36139 41006 34949 34954 27954 4102.3 38883 23065 37588 25032 36708 40279 35441 35419 27879 4671.7 1 1 1 1 1 1 1 1 1 1 5022 1666 4427 4718 5571 5571 3065 SSSLGNK 7 Phospho (STY) _SSS(ph)LGNK_ S(0.011)S(0.046)S(0.943)LGNK S(-19.47)S(-13.1)S(13.1)LGNK 0 0 1 0 Q9H4A3 Q9H4A3 Q9H4A3 WNK1 Serine/threonine-protein kinase WNK1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.828491210938 2 386.665476 771.316398 40334.0957904153 1.2239 0.00047325 592660 229.16 592670 229.16 615.828032554238 37.456 0.36528 37.456 37.293 37.658 -7.1054E-15 36 15 3 0.990676410722872 0.00272061450592108 0.012015679710575 0.009044 1 8484 89.913 50.064 3 77029000 117000 43885 122440 38178 72178 122080 70643 77746 42804 5783.5 110730 41424 122360 40897 76167 118080 71219 79878 43416 7245.2 1 1 1 1 1 1 1 1 1 1 5023 1936 4428 4719 5572 5572 3508 SSSLGNLK 8 Phospho (STY) _SSS(ph)LGNLK_ S(0.021)S(0.064)S(0.915)LGNLK S(-16.47)S(-11.53)S(11.53)LGNLK 0 0 1 0 Q86W92 Q86W92 Q86W92 PPFIBP1 Liprin-beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.373901367188 2 443.207508 884.400462 38667.2992795288 2.1894 0.00097036 517060 229.16 517060 229.16 672.371755320765 57.615 0.48145 57.615 57.393 57.875 -7.1054E-15 35 16 3 0.663033647465193 0.00174885879657519 0.107449780272256 0.022783 1 13484 63.694 28.516 3 12929000 29973 12464 30384 15244 25332 32521 30645 24012 13733 14087 28363 11790 30519 15760 26064 31746 30476 24840 14268 13820 1 1 1 1 1 1 1 1 1 1 5024 1386 4429 4720 5573 5573 2514 SSSLGNLKK 9 Phospho (STY) _SSS(ph)LGNLKK_ S(0.043)S(0.117)S(0.84)LGNLKK S(-12.89)S(-8.55)S(8.55)LGNLKK 0 0 1 1 Q86W92 Q86W92 Q86W92 PPFIBP1 Liprin-beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 567.669250488281 3 338.505752 1012.49543 41563.9281137099 1.7323 0.00058639 676980 229.16 676990 229.16 567.668772061671 55.318 0.55033 55.318 55.044 55.594 -7.1054E-15 44 18 3 0.78329569018907 0.00273812833386127 0.0237236146186816 0.040573 1 12885 45.507 21.164 3 72148000 36510 16203 36560 14877 29095 36889 33812 28116 16441 3462.3 34548 15299 36728 15710 30017 35890 33716 28647 16959 3910.9 1 1 1 1 1 1 1 1 1 1 5025 1386 4430 4721 5574 5574 2514 SSSLIQLTSQNSSPNQQR 18 Phospho (STY) _SSS(ph)LIQLTSQNSSPNQQR_ S(0.001)SS(0.999)LIQLTSQNSSPNQQR S(-31.84)S(-39.78)S(31.84)LIQLT(-114.14)S(-140.06)QNS(-186.14)S(-213.05)PNQQR 0 0 1 0 O95639 O95639 O95639 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1142.56188964844 2 1027.97876 2053.94298 29229.4581041571 0.85799 0.000882 111460 114.58 111460 114.58 1142.56105930069 62.262 0.34032 62.262 62.036 62.376 7.1054E-15 29 11 3 0.961030185058755 0.000695156083879511 0.0353739606978628 5.3625E-81 1 14609 444.27 407.18 7 11730000 3968.2 5254 4344.7 4718.3 5878.3 3787.3 5732.7 5959.3 5838 9166.7 3756.4 4960.2 4371.7 4862.3 5872.8 3882.2 5845.3 6169.6 5755.8 8769.5 1 1 1 1 1 1 1 1 1 1 5026 254 4431 4722 5575 5575 426 SSSLKER 7 Phospho (STY) _SSS(ph)LKER_ SSS(0.999)LKER S(-38.26)S(-33.21)S(33.21)LKER 0 0 1 1 Q9UHB6 Q9UHB6 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.869201660156 2 443.705132 885.395711 38439.2824165058 2.7029 0.0011993 516480 229.16 516480 229.16 672.868074193368 30.388 0.53785 30.388 30.103 30.641 3.5527E-15 52 17 4 0.995394623045057 0.00714432899603357 0.287299806367385 0.00077831 1 6773 125.75 45.058 3 71531000 25650 36932 20354 31599 57978 23461 61076 40367 34569 4361.9 24251 34858 21266 32640 56633 24099 61296 39967 35234 5041.5 1 1 1 1 1 1 1 1 1 1 5027 2144 4432 4723 5576 5576 3861 SSSLPAYGR 9 Phospho (STY) _SSS(ph)LPAYGR_ S(0.011)S(0.011)S(0.979)LPAYGR S(-19.68)S(-19.68)S(19.68)LPAY(-45.63)GR 0 0 1 0 Q08495 Q08495 Q08495 DMTN Dematin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 624.307861328125 2 509.223689 1016.43283 39654.2037919664 1.7864 0.00090968 225010 114.58 225010 114.58 623.805438767544 44.762 0.63997 44.762 44.453 45.093 0 34 21 2 0.789609745522258 0.00104081993309235 0.0220993441306897 0.024649 1 10269 61.48 39.943 4 26711000 13111 19869 14772 18734 21407 15168 22534 18795 21069 5811.5 12413 18763 14862 19247 21347 15419 22843 18887 20851 5907.2 1 1 1 1 1 1 1 1 1 1 5028 889 4433 4724 5577 5577 1450 SSSLSAANTSQTNPQGAVSSTVSGLQR 27 Phospho (STY) _SSS(ph)LSAANTSQTNPQGAVSSTVSGLQR_ S(0.151)S(0.151)S(0.697)LS(0.002)AANTSQTNPQGAVSSTVSGLQR S(-6.66)S(-6.66)S(6.66)LS(-26.4)AANT(-96.66)S(-126.15)QT(-180.89)NPQGAVS(-262.41)S(-266.21)T(-269.74)VS(-278.69)GLQR 0 0 1 0 Q15052 Q15052 Q15052 ARHGEF6 Rho guanine nucleotide exchange factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 982.478576660156 3 905.757558 2714.25084 31135.6792708309 1.3337 0.001208 84335 76.387 84336 76.388 982.144652161155 65.207 0.48793 65.207 64.966 65.454 0 67 16 5 0.843414631955429 0.00542076343013979 0.159298408438286 8.332E-26 1 15308 284.82 256.48 11 44867000 15533 10251 17854 10966 10380 16096 10710 12761 11690 12706 14707 9687.9 17754 11299 10980 15887 10913 13312 11493 12259 1 1 1 1 1 1 1 1 1 1 5029 1051 4434 4725 5578 5578 1816 SSSMSSLTGAYASGIPSSSR 20 Phospho (STY) _SSS(ph)MSSLTGAYASGIPSSSR_ SS(0.001)S(0.998)MS(0.001)SLTGAYASGIPSSSR S(-42.97)S(-29.98)S(29.98)MS(-29.98)S(-61.74)LT(-116.11)GAY(-247.78)AS(-200.45)GIPS(-263.93)S(-268.9)S(-273.85)R 0 0 1 0 Q96HA1 Q96HA1 Q96HA1 POM121 Nuclear envelope pore membrane protein POM 121 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1121.51953125 2 1006.93518 2011.8558 30222.9521559422 0.61481 0.00061907 113790 114.58 113790 114.58 1121.51749930876 70.71 0.28828 70.71 70.567 70.855 0 21 9 3 0.914186984078563 0.000555427638080275 0.0275728973149166 5.9817E-54 1 16594 389.89 352.41 11 8264100 5056.9 6050.2 5018.3 5477.2 5033.7 5154 4731.1 6787.3 5158.6 21905 4785 5712.1 5055 5653.6 5103.4 5242.2 4842.1 7404.9 5071.9 20783 1 1 1 1 1 1 1 1 1 1 5030 1688 4435 4726 5579 5579 3104 SSSMSSLTGAYTSGIPSSSR 20 Phospho (STY) _SSS(ph)MSSLTGAYTSGIPSSSR_ SS(0.005)S(0.994)MS(0.001)SLTGAYTSGIPSSSR S(-37.3)S(-23.43)S(23.43)MS(-30.39)S(-50.96)LT(-62.49)GAY(-145.66)T(-118.74)S(-123.32)GIPS(-168.15)S(-177.87)S(-177.7)R 0 0 1 0 A8CG34 A8CG34 A8CG34 POM121C Nuclear envelope pore membrane protein POM 121C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1137.02563476563 2 1021.94046 2041.86636 29715.5416677811 1.0327 0.0010554 112120 114.58 112120 114.58 1137.02381156152 71.149 0.3972 71.149 70.944 71.342 0 39 13 4 0.915549728227342 0.000507434630293114 0.0149216775668241 1.4392E-16 1 16683 243.17 200.14 12 12283000 4532.3 6605.8 5317.2 6310.2 4597.5 5135.2 5347.4 9500 7712.2 54825 4291.7 6238.6 5301.6 6478.3 4720.9 5357.7 5472 11012 7509.4 51844 1 1 1 1 1 1 1 1 1 1 5031 15 4436 4727 5580 5580 29 SSSNSGSTGFISFSGVESALSSLK 24 Phospho (STY) _SSSNSGST(ph)GFISFSGVESALSSLK_ S(0.142)S(0.142)S(0.142)NS(0.142)GS(0.186)T(0.245)GFISFSGVESALSSLK S(-2.36)S(-2.36)S(-2.36)NS(-2.36)GS(-1.19)T(1.19)GFIS(-31.48)FS(-53.01)GVES(-77.15)ALS(-84.35)S(-90.03)LK 0 0 1 0 Q96MF7 Q96MF7 Q96MF7 NSMCE2 E3 SUMO-protein ligase NSE2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 958.808898925781 3 806.03537 2415.08428 33111.737888072 1.3835 0.0011151 189540 152.77 189540 152.77 958.808086718657 102.2 0.11649 102.2 102.16 102.28 0 7 3 3 0.950878499361547 0.000786043308694806 0.0168671036363273 0.0028208 1 24087 96.903 79.202 11 19478000 3875 5258.4 4831.3 5263.4 5294.2 3571.7 4789.9 6265.1 7005.4 55770 3670.3 4967.5 4814.6 5376.8 5340.2 3794.4 4960.6 7860.4 6818.2 52659 1 1 1 1 1 1 1 1 1 1 5032 1713 4437 4728 5581 5581 4731 SSSPAPADIAQTVQEDLR 18 Phospho (STY) _SSS(ph)PAPADIAQTVQEDLR_ S(0.001)S(0.065)S(0.934)PAPADIAQTVQEDLR S(-31.82)S(-11.56)S(11.56)PAPADIAQT(-153.55)VQEDLR 0 0 1 0 Q13283 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1098.0390625 2 982.951684 1963.88881 29716.226012836 1.4713 0.0014462 116570 114.58 116570 114.58 1098.03396938767 89.448 1.5064 89.448 88.997 90.503 0 241 51 7 0.902432670267593 0.00262246141861374 0.162816512298098 3.4233E-41 1 20783 329.97 287.97 4 2611900000 5778 6575 6159.9 7014 4708.4 6613.9 4680.5 7595 6916.3 25462 5468.9 6213.7 6162.9 7168.5 4865.5 6707.5 4826.9 8347.6 6729.5 24152 1 1 1 1 1 1 1 1 1 1 5033 943 4438 4729 5582 5582 1567 SSSPAPADIAQTVQEDLR 18 Phospho (STY) _SSS(ph)PAPADIAQTVQEDLR_ S(0.285)S(0.285)S(0.43)PAPADIAQTVQEDLR S(-1.79)S(-1.79)S(1.79)PAPADIAQT(-188.38)VQEDLR 0 0 1 0 Q13283 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.359924316406 3 655.636881 1963.88881 36036.3396534845 1.5164 0.00099423 116510 76.388 116510 76.389 732.358937782834 89.497 2.087 89.497 88.939 91.026 0 311 71 7 0.993284110336432 0.0216515543602491 0.371581500787778 1.4253E-16 2 20959 244.01 223.01 4 3283500000 15108 13312 11333 13789 9413.5 10657 8832.1 12910 12863 38604 14282 12578 11604 14079 9661.8 10923 9128.6 14026 12521 36649 2 2 2 2 2 2 2 2 2 2 5034 943 4438 4729 5583;5584 5583 1567 SSSPELVTHLK 11 Phospho (STY) _SSS(ph)PELVTHLK_ S(0.11)S(0.11)S(0.779)PELVTHLK S(-8.48)S(-8.48)S(8.48)PELVT(-84.62)HLK 0 0 1 0 Q07960 Q07960 Q07960 ARHGAP1 Rho GTPase-activating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 579.318908691406 3 426.542754 1276.60643 40687.024321571 1.2282 0.00052386 358170 152.78 358170 152.78 579.318340340878 62.276 0.83846 62.276 61.978 62.817 0 96 28 5 0.86110665022961 0.00536815650803984 0.119018216116606 1.398E-10 1 14587 199.96 156.45 4 214750000 24583 15380 23336 16637 15168 24822 14261 19906 14780 2915.1 23258 14536 23468 17137 15862 24458 14575 20245 14562 3205.6 1 1 1 1 1 1 1 1 1 1 5035 885 4439 4730 5585 5585 1439;1440 SSSPGKLLGSGYGGLTGGSSR 21 Phospho (STY) _SSS(ph)PGKLLGSGYGGLTGGSSR_ S(0.008)S(0.008)S(0.985)PGKLLGSGYGGLTGGSSR S(-21.09)S(-21.09)S(21.09)PGKLLGS(-55.52)GY(-91.71)GGLT(-105.24)GGS(-108.32)S(-117.55)R 0 0 1 1 Q7Z460 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 822.091552734375 3 668.984393 2003.93135 35351.429561324 1.7919 0.0011988 228370 152.77 228370 152.78 822.092844905231 70.46 0.55343 70.46 70.102 70.655 -1.4211E-14 49 18 4 0.952702341149736 0.00159219180651907 0.00314642882355689 6.3219E-08 1 16522 156.11 127.7 8 26882000 10138 12943 12670 12076 17165 12292 19121 16516 14232 16314 9602.5 12222 12672 12456 17177 12395 19235 16895 14250 15743 1 1 1 1 1 1 1 1 1 1 5036 1338 4440 4731 5586 5586 2417 SSSPIPLTPSK 11 Phospho (STY) _SSS(ph)PIPLTPSK_ S(0.056)S(0.056)S(0.888)PIPLTPSK S(-12.04)S(-12.04)S(12.04)PIPLT(-34.06)PS(-46.52)K 0 0 1 0 Q8N5Y2 Q8N5Y2 Q8N5Y2 MSL3 Male-specific lethal 3 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 826.960571289063 2 597.294311 1192.57407 34321.7187346979 2.6815 0.0016017 383670 229.16 383670 229.16 826.4572674581 63.698 0.51492 63.698 63.433 63.948 0 45 17 3 0.980926375276278 0.00121331541847136 0.0339691160714899 0.017177 1 14936 69.261 39.007 5 34190000 18046 18494 19096 20393 19528 18666 18811 19951 21370 23653 17080 17481 19172 20795 19784 18848 19252 20675 20977 22733 1 1 1 1 1 1 1 1 1 1 5037 1476 4441 4732 5587 5587 2725 SSSPIRLPEMSGGQTNR 17 Phospho (STY) _SSS(ph)PIRLPEMSGGQTNR_ S(0.083)S(0.261)S(0.656)PIRLPEMSGGQTNR S(-8.96)S(-4)S(4)PIRLPEMS(-37.51)GGQT(-40.97)NR 0 0 1 1 Q9Y2I7 Q9Y2I7 Q9Y2I7 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.349304199219 3 632.959301 1895.85608 37306.2441782903 1.8103 0.0011458 120680 76.389 120690 76.39 709.681482090481 61.314 0.67113 61.314 60.979 61.65 0 77 22 4 0.606620164170838 0.00142134073078404 0.0417785065092421 0.038457 1 14391 47.7 30.419 5 12414000 15693 13966 15577 15185 17994 16765 17330 15909 15158 7379.6 14849 13200 15720 15542 18106 16737 17613 16213 15049 7316.9 1 1 1 1 1 1 1 1 1 1 5038 2247 4442 4733 5588 5588 4149 SSSPLSK 7 Acetyl (Protein N-term),Phospho (STY) _(ac)SSS(ph)PLSK_ S(0.012)S(0.079)S(0.907)PLS(0.002)K S(-18.72)S(-10.6)S(10.6)PLS(-25.81)K 1 0 1 0 P22314 P22314 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 528.763427734375 2 414.180959 826.347364 42439.2515918115 1.0114 0.0004189 276650 114.58 276650 114.58 528.762832915063 44.385 1.1844 44.385 44.051 45.236 0 117 40 5 0.903474294676712 0.00850838067327119 0.245867448038876 0.0056917 1 10153 60.019 53.565 4 674430000 34175 23853 32073 26784 38738 34479 40957 31492 24515 2759.5 32330 22550 32503 27446 38934 34184 41134 31788 24886 3327.2 1 1 1 1 1 1 1 1 1 1 5039 457 4443 4734 5589 5589 747;748 SSSPLSKK 8 Acetyl (Protein N-term),Phospho (STY) _(ac)SS(ph)SPLSKK_ S(0.22)S(0.458)S(0.313)PLS(0.009)KK S(-3.18)S(1.65)S(-1.65)PLS(-17.15)KK 1 0 1 1 P22314 P22314 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.393493652344 2 478.22844 954.442327 37168.2295199549 0.91862 0.00043931 479190 229.16 479190 229.16 707.391794900339 47.178 0.82776 47.178 46.828 47.656 7.1054E-15 77 32 5 0.738237727826647 0.00249175758703667 0.0414904943161625 0.0086297 1 10855 45.161 16.464 4 354050000 53805 37410 59194 38975 61689 52982 72699 55585 38212 10003 50934 35348 59346 40148 62578 52533 72528 55957 39166 10705 1 1 1 1 1 1 1 1 1 1 5040 457 4444 4735 5590 5590 747;748 SSSPNSPLPMFR 12 Phospho (STY) _SSSPNS(ph)PLPMFR_ SSSPNS(1)PLPMFR S(-47.66)S(-49.95)S(-34.59)PNS(34.59)PLPMFR 0 0 1 0 Q7Z401 Q7Z401 Q7Z401 DENND4A C-myc promoter-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.890502929688 2 700.307427 1398.6003 35027.5742052345 1.9137 0.0013402 163610 114.58 163620 114.58 814.888721117267 76.848 0.47015 76.848 76.587 77.057 1.4211E-14 50 15 4 0.975527434639394 0.00126429150937956 0.0430519613462193 1.3669E-11 1 18008 209.53 161.34 4 15496000 12980 14061 13739 13550 10536 14312 10192 11970 12513 16100 12286 13280 13751 13956 10878 14313 10454 12582 12248 15437 1 1 1 1 1 1 1 1 1 1 5041 1333 4445 4736 5591 5591 2405 SSSPPILTKPTLK 13 Phospho (STY) _SSS(ph)PPILTKPTLK_ S(0.109)S(0.109)S(0.783)PPILTKPTLK S(-8.57)S(-8.57)S(8.57)PPILT(-47.22)KPT(-72.63)LK 0 0 1 1 Q92794 Q92794 Q92794 KAT6A Histone acetyltransferase KAT6A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.095458984375 3 483.596859 1447.76875 38113.6299658194 2.3218 0.0011228 473870 229.16 473870 229.16 712.75973600196 73.049 0.52215 73.049 72.749 73.271 0 52 17 4 0.980886767055609 0.00212038747754514 0.034744464568158 0.0042474 1 17130 89.311 76.951 5 23973000 17342 11754 18431 14121 12063 17205 12998 14803 13355 7608.5 16414 11117 18420 14404 12631 17092 13196 15170 13163 7506.9 1 1 1 1 1 1 1 1 1 1 5042 1621 4446 4737 5592 5592 2997 SSSPPPRK 8 Phospho (STY) _SSS(ph)PPPRK_ SS(0.002)S(0.998)PPPRK S(-42.07)S(-26.7)S(26.7)PPPRK 0 0 1 1 Q9Y2W1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.258605957031 3 312.483058 934.427346 45410.5424077328 0.26536 8.2921E-05 488910 152.78 488910 152.78 465.258458866869 25.879 2.0824 25.879 25.327 27.41 0 211 71 4 0.969519931702978 0.00957832119964972 0.075971305981868 0.00039514 3 5714 125.71 90.489 3 148930000 44296 50720 44732 51199 69230 45681 69641 58477 56026 13277 41917 47916 45318 52452 68802 46220 70496 58561 55858 13856 3 3 3 3 3 3 3 3 3 3 5043 2257 4447 4738 5593;5594;5595 5594 4182 SSSPQLHTCR 10 Phospho (STY) _SSS(ph)PQLHTCR_ S(0.001)S(0.001)S(0.826)PQLHT(0.172)CR S(-30.98)S(-27.8)S(6.82)PQLHT(-6.82)CR 0 0 1 0 REV__Q8IUY3 REV__Q8IUY3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.341552734375 2 626.760644 1251.50674 35923.4963771211 1.1547 0.0007237 182810 114.58 182810 114.58 741.340472378379 48.448 0.40932 48.448 48.184 48.594 7.1054E-15 32 13 3 0.983771290746257 0.00122621315382274 0.0247507720393993 0.046375 1 11219 51.765 15.341 4 20120000 12051 16250 12625 15890 23429 13127 24435 18438 16731 10018 11405 15349 12814 16293 23144 13367 24613 18591 16835 9859.9 1 1 1 1 1 1 1 1 1 1 + 5044 2338 4448 4739 5596 5596 4296 SSSPQPK 7 Phospho (STY) _SSS(ph)PQPK_ S(0.003)S(0.005)S(0.992)PQPK S(-24.86)S(-23.13)S(23.13)PQPK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 634.837463378906 2 405.673301 809.332049 39146.8364927894 2.8444 0.0011539 564890 229.16 564900 229.16 634.836162211122 28.261 0.629 28.261 28.008 28.637 -3.5527E-15 56 21 4 0.818422716638359 0.00768079734513874 0.257752482976004 0.0019155 1 6279 108.81 67.233 3 45795000 43096 44911 44500 42361 26857 42112 26270 34330 45658 2298.6 40785 42411 44511 43647 28306 42129 27300 34806 44228 2958.9 1 1 1 1 1 1 1 1 1 1 5045 2226 4449 4740 5597 5597 4108 SSSPTQYGLTK 11 Phospho (STY) _SSS(ph)PTQYGLTK_ SSS(1)PTQYGLTK S(-35.6)S(-51.12)S(35.6)PT(-73.46)QY(-202.31)GLT(-173.07)K 0 0 1 0 Q9NYL2 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.943237304688 2 624.779025 1247.5435 33548.1042062347 2.023 0.0012639 366790 229.16 366790 229.16 853.941872384484 57.321 0.77828 57.321 56.897 57.675 0 100 26 5 0.995269513845914 0.00525341527701397 0.143983739807544 3.3712E-30 1 13362 318.13 267.07 6 299490000 58324 56413 61149 52976 52898 60340 67320 59382 55390 18042 55200 53272 61338 54722 54361 60175 67507 60146 55160 18363 1 1 1 1 1 1 1 1 1 1 5046 2075 4450 4741 5598 5598 3760 SSSPTSYWK 9 Phospho (STY) _SSS(ph)PTSYWK_ S(0.001)S(0.013)S(0.986)PTSYWK S(-28.25)S(-18.88)S(18.88)PT(-37.26)S(-67.31)Y(-139.41)WK 0 0 1 0 Q92614 Q92614 Q92614 MYO18A Unconventional myosin-XVIIIa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.892944335938 2 561.728804 1121.44306 33249.2399948861 2.2922 0.0012876 407960 229.16 407960 229.17 790.892791681487 67.583 1.4027 67.583 67.21 68.612 0 100 47 4 0.993514827425884 0.00214955328670878 0.14318390706639 7.1612E-10 1 15829 208.6 145.39 6 79996000 33286 18161 33447 19345 11668 32724 14255 23364 19597 13655 31497 17163 33408 20006 13168 32112 14532 24210 19110 13399 1 1 1 1 1 1 1 1 1 1 5047 1608 4451 4742 5599 5599 2961 SSSPVGLAK 9 Phospho (STY) _SSS(ph)PVGLAK_ S(0.002)S(0.001)S(0.997)PVGLAK S(-27.1)S(-29.42)S(27.1)PVGLAK 0 0 1 0 Q9NRA8 Q9NRA8 Q9NRA8 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.38720703125 2 463.223158 924.431763 37732.7610873739 1.4061 0.00065135 494710 229.16 494710 229.16 692.385845746123 52.861 0.56908 52.861 52.549 53.118 0 58 20 4 0.905412342794263 0.0039734586696395 0.0758135772995834 3.431E-06 1 12274 161.67 74.411 3 230070000 55684 35959 55188 38094 54118 53067 55705 48369 37346 7999.6 52689 33981 55590 39224 54987 52480 56124 48941 37628 8652 1 1 1 1 1 1 1 1 1 1 5048 2014 4452 4743 5600 5600 3663 SSSPVKR 7 Acetyl (Protein N-term),Phospho (STY) _(ac)SSS(ph)PVKR_ S(0.2)S(0.2)S(0.599)PVKR S(-4.76)S(-4.76)S(4.76)PVKR 1 0 1 1 P37837 P37837 P37837 TALDO1 Transaldolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.2900390625 2 441.707675 881.400797 41416.2491083839 1.3182 0.00058224 259410 114.58 259410 114.58 556.28945368897 26.331 0.54911 26.331 26.073 26.623 0 69 18 5 0.981240436098782 0.0148783201865451 0.394975639762931 0.017342 1 5854 45.68 30.459 3 204550000 22596 31451 23902 32026 17880 21476 17247 25185 33100 3210.1 21386 29714 23918 32679 18506 22050 18020 25216 31987 3605.6 1 1 1 1 1 1 1 1 1 1 5049 560 4453 4744 5601 5601 906 SSSPVNVK 8 Acetyl (Protein N-term),Phospho (STY) _(ac)SSS(ph)PVNVK_ S(0.017)S(0.133)S(0.85)PVNVK S(-16.98)S(-8.05)S(8.05)PVNVK 1 0 1 0 Q00839 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 584.795104980469 2 470.21279 938.411027 40304.6212654465 1.2518 0.00058861 243680 114.58 243680 114.58 584.794811172308 43.538 2.2069 43.538 43.059 45.266 -7.1054E-15 178 75 5 0.936760598563443 0.00481520159078373 0.0831650415939748 0.0008861 2 9905 91.318 86.962 3 10654000000 62467 46925 58943 50656 47805 56397 50493 49593 48351 6999.3 59096 44350 59424 51877 49206 56201 51210 50220 47799 7738.4 2 2 2 2 2 2 2 2 2 2 5050 829 4454 4745 5602;5603 5602 1330;1331 SSSPVNVKK 9 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)SSPVNVKK_ S(0.392)S(0.304)S(0.304)PVNVKK S(1.1)S(-1.1)S(-1.1)PVNVKK 1 0 1 1 Q00839 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.426025390625 2 534.260272 1066.50599 35791.8856116085 1.144 0.00061119 428930 229.16 428940 229.16 763.423794862559 45.451 1.428 45.451 45.063 46.491 0 191 48 6 0.890937511773373 0.0164647902746635 0.359529054133099 0.00031757 2 10404 63.565 44.109 3 18339000000 338930 225310 332520 228350 241410 294690 257090 263780 232570 24006 320690 212860 334110 235340 250570 292080 260270 266510 230520 28709 2 2 2 2 2 2 2 2 2 2 5051 829 4455 4746 5604;5605 5604 1330;1331 SSSPVQVEEEPVR 13 Phospho (STY) _SSS(ph)PVQVEEEPVR_ S(0.053)S(0.085)S(0.861)PVQVEEEPVR S(-12.08)S(-10.04)S(10.04)PVQVEEEPVR 0 0 1 0 Q8IZ21 Q8IZ21 Q8IZ21 PHACTR4 Phosphatase and actin regulator 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.92626953125 2 761.842885 1521.67122 33110.9873120978 1.1966 0.00091163 150400 114.58 150400 114.58 876.423975478832 46.533 0.57104 46.533 46.287 46.858 0 75 19 5 0.867174305760531 0.00358256291323505 0.0397003806596592 1.8675E-10 1 10722 184.51 151.28 3 194010000 23741 39312 22930 40505 45893 27684 47734 38862 44305 10182 22462 37143 23421 41310 45239 28480 48407 38855 43861 10487 1 1 1 1 1 1 1 1 1 1 5052 1439 4456 4747 5606 5606 2672 SSSPVTELASR 11 Phospho (STY) _SSS(ph)PVTELASR_ SS(0.001)S(0.999)PVTELASR S(-35.66)S(-31.27)S(31.27)PVT(-43.75)ELAS(-107.99)R 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.858825683594 2 607.27665 1212.53875 35919.2107890377 1.4057 0.00085362 188680 114.58 188680 114.58 721.858135365911 52.191 1.1519 52.191 51.747 52.899 0 112 38 4 0.807982433757414 0.0111423081927087 0.149087631101386 6.8348E-15 2 12146 229.6 174.13 5 199540000 159680 152440 148300 138070 110000 153780 98717 143460 166370 14448 151050 143930 149500 142890 113790 153340 102880 144730 161280 16924 2 2 2 2 2 2 2 2 2 2 5053 2226 4457 4748 5607;5608 5608 4109 SSSPVTELASRSPIR 15 2 Phospho (STY) _SSS(ph)PVTELASRS(ph)PIR_ S(0.088)S(0.121)S(0.792)PVTELAS(0.379)RS(0.621)PIR S(-9.44)S(-8.09)S(8.09)PVT(-46.96)ELAS(-2.1)RS(2.1)PIR 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.654846191406 3 582.932291 1745.77504 37598.3982489235 1.6198 0.00094422 131040 76.388 131040 76.389 659.319774392751 59.081 1.0107 59.081 58.667 59.678 0 106 34 4 0.992331614993608 0.00497244604447824 0.0793440450856555 4.1443E-07 1 13815 159.1 138.73 15 65319000 11181 13038 11682 11820 8556.5 10983 9039.7 10897 12802 6826.5 10582 12310 11697 12197 8878.1 11058 9281.4 11140 12472 6680.2 1 1 1 1 1 1 1 1 1 1 5054 2226 4458 4749 5609 5609 4090;4109 SSSPVTELASRSPIRQDR 18 2 Phospho (STY) _SSS(ph)PVTELASRS(ph)PIRQDR_ S(0.024)S(0.038)S(0.938)PVT(0.003)ELAS(0.085)RS(0.912)PIRQDR S(-15.85)S(-13.92)S(13.92)PVT(-24.43)ELAS(-10.3)RS(10.3)PIRQDR 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.7177734375 3 715.994502 2144.96168 35078.3003081024 1.2297 0.00088046 106690 76.388 106690 76.389 792.717069581376 52.1 1.238 52.1 51.718 52.956 0 175 42 5 0.992877258179005 0.00559404814544638 0.0177959536190598 7.4684E-05 1 12069 105.65 85.751 15 217610000 17192 12788 15966 14008 10960 15122 10928 14362 14621 8913.5 16263 12087 16086 14327 11421 15115 11227 14705 14270 8725.6 1 1 1 1 1 1 1 1 1 1 5055 2226 4459 4750 5610 5610 4090;4109 SSSQENLLDEVMK 13 Phospho (STY) _S(ph)SSQENLLDEVMK_ S(0.365)S(0.365)S(0.271)QENLLDEVMK S(0)S(0)S(-1.3)QENLLDEVMK 0 0 1 0 Q3V6T2 Q3V6T2 Q3V6T2 CCDC88A Girdin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.671203613281 3 520.560144 1558.6586 38772.2824800058 1.9716 0.0010263 293480 152.78 293480 152.78 673.335323497376 97.267 0.55088 97.267 96.95 97.501 0 46 18 3 0.912252159868119 0.00204318220365093 0.0217404253844687 0.00013007 1 22572 110.26 57.916 3 6466300 3325.5 3964.3 3891.1 3504.6 7054.2 3440.1 7455.3 6442.4 3518.1 10289 3148.9 3742.4 3925 3625.4 6973.8 3508.1 7461.8 6655.8 3638.3 9837.7 1 1 1 1 1 1 1 1 1 1 5056 1131 4460 4751 5611 5611 1972;1973 SSSQPSPSDPK 11 Phospho (STY) _SSSQPS(ph)PSDPK_ SSS(0.002)QPS(0.956)PS(0.042)DPK S(-44.92)S(-39.55)S(-27.37)QPS(13.54)PS(-13.54)DPK 0 0 1 0 Q9H322;Q9NNX9;Q9H320;Q9H321 Q9H322 Q9H322 VCX2;VCX3A;VCX;VCX3B Variable charge X-linked protein 2;Variable charge X-linked protein 3;Variable charge X-linked protein 1;Variable charge X-linked protein 3B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.411926269531 2 598.745183 1195.47581 34194.1690205214 2.1225 0.0012709 382740 229.16 382740 229.16 827.908729234133 33.092 0.46134 33.092 32.822 33.284 0 44 15 3 0.981653926357811 0.00106576793005319 0.0325368133719713 0.0055929 1 7383 91.28 69.132 5 16338000 4838.9 20847 4925.2 21025 5077.9 6147.3 4519.8 9540 24691 4023.1 4579.2 19695 4955.3 21338 5155.2 6875.9 5180 9559.1 23507 4009 1 1 1 1 1 1 1 1 1 1 5057 1927 4461 4752 5612 5612 3499 SSSQSGSGPSSPDSVLRPR 19 Phospho (STY) _SSSQSGSGPSS(ph)PDSVLRPR_ SSSQSGSGPS(0.035)S(0.965)PDSVLRPR S(-91.22)S(-91.22)S(-79.72)QS(-53.62)GS(-45.66)GPS(-14.44)S(14.44)PDS(-55.88)VLRPR 0 0 1 1 O75427 O75427 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.0205078125 3 656.63213 1966.87456 35794.7157747062 2.0792 0.0013653 116330 76.387 116330 76.388 733.019315989395 45.964 0.90623 45.964 45.585 46.491 7.1054E-15 81 30 3 0.96768962801754 0.00285636984117977 0.0646881650337923 5.11E-11 1 10620 184.95 170.79 8 35996000 11370 12561 12850 13540 18537 12844 19396 15661 14343 5850.4 10765 11871 12925 13832 18483 12952 19564 15776 14367 5871.3 1 1 1 1 1 1 1 1 1 1 5058 186 4462 4753 5613 5613 325 SSSSERPEPQQK 12 Phospho (STY) _S(ph)SSSERPEPQQK_ S(0.413)S(0.316)S(0.263)S(0.008)ERPEPQQK S(1.16)S(-1.16)S(-1.96)S(-17.19)ERPEPQQK 0 0 1 1 P78362 P78362 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.31884765625 3 480.543594 1438.60895 37556.0704240375 2.4347 0.00117 317920 152.77 317920 152.78 633.317914605077 28.022 0.25575 28.022 27.866 28.122 0 15 8 2 0.873896149261447 0.00131328787501651 0.0199848470272283 0.0097681 1 6251 71.692 54.41 4 10428000 7600.2 7080 8090.4 7634.3 7882.9 7730.1 7652.8 7876.8 8637.4 2459 7193.6 6691.4 8115.4 7806.4 8009.5 7750.4 7827.9 7969.4 8480.8 2497.8 1 1 1 1 1 1 1 1 1 1 5059 799 4463 4754 5614 5614 1277 SSSSPELQTLQDILGDPGDK 20 Phospho (STY) _S(ph)SSSPELQTLQDILGDPGDK_ S(0.343)S(0.343)S(0.27)S(0.044)PELQTLQDILGDPGDK S(0)S(0)S(-1.03)S(-8.87)PELQT(-62.4)LQDILGDPGDK 0 0 1 0 P49815 P49815 P49815 TSC2 Tuberin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.108764648438 3 722.998256 2165.97294 33880.7515161224 1.1093 0.00080204 211310 152.78 211310 152.78 876.108051401289 101.25 0.20149 101.25 101.19 101.39 0 18 6 4 0.953082010241933 0.00397509538260602 0.0944961773847097 9.5356E-08 1 23785 154.13 129.57 5 36722000 16890 12480 14363 12757 12669 14852 13081 16958 14381 51561 15973 11791 14588 13115 12964 14917 13332 18482 14134 48944 1 1 1 1 1 1 1 1 1 1 5060 657 4464 4755 5615 5615 1109;1110 SSSSQTLTQFDSNIAPADPDTAIVHPVPIR 30 Phospho (STY) _S(ph)SSSQTLTQFDSNIAPADPDTAIVHPVPIR_ S(0.361)S(0.361)S(0.268)S(0.011)QTLTQFDSNIAPADPDTAIVHPVPIR S(0)S(0)S(-1.29)S(-15.26)QT(-32.25)LT(-85.14)QFDS(-171.46)NIAPADPDT(-241.8)AIVHPVPIR 0 0 1 0 Q96D71 Q96D71 Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1159.24938964844 3 1082.18891 3243.5449 29307.2920415697 1.0826 0.0011716 70587 76.388 70588 76.389 1158.91219066615 86.304 0.37415 86.304 86.131 86.505 0 47 12 5 0.97767134140493 0.00430483956702167 0.0820345550319284 1.9987E-25 1 20141 257.32 243.8 8 21445000 1642.3 2125.1 1873.7 2243.5 1649.1 2124.9 2002.7 2227.3 2603.9 16459 1554.9 2008.2 1871.3 2294.5 1692.3 2167.4 2038.1 2726.1 2543.8 15550 1 1 1 1 1 1 1 1 1 1 5061 1666 4465 4756 5616 5616 3066;3067;3068 SSSSQTLTQFDSNIAPADPDTAIVHPVPIR 30 Phospho (STY) _SSS(ph)SQTLTQFDSNIAPADPDTAIVHPVPIR_ S(0.281)S(0.281)S(0.35)S(0.087)QT(0.001)LTQFDSNIAPADPDTAIVHPVPIR S(-0.95)S(-0.95)S(0.95)S(-6.07)QT(-26.45)LT(-75.79)QFDS(-147.12)NIAPADPDT(-206.12)AIVHPVPIR 0 0 1 0 Q96D71 Q96D71 Q96D71 REPS1 RalBP1-associated Eps domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.436401367188 4 811.893502 3243.5449 34370.2876967922 1.1687 0.00094887 70565 57.291 70566 57.292 869.435613296821 86.346 0.42962 86.346 86.131 86.561 1.4211E-14 44 14 4 0.943385793621221 0.00232072352737564 0.0405840111918535 7.5417E-18 1 20153 221.64 210.35 8 19478000 1976.7 2565.6 3355.1 3727.5 2301.1 2956.4 2186.6 3236.9 3391.6 12980 1875.6 2430.2 3286 3743.9 2396.9 3025.7 2264.3 3627.1 3295.4 12297 1 1 1 1 1 1 1 1 1 1 5062 1666 4465 4756 5617 5617 3066;3067;3068 SSSSSASPSSPSSREEK 17 Phospho (STY) _SSSSSASPSS(ph)PSSREEK_ SSSSSASPS(0.005)S(0.994)PS(0.001)SREEK S(-96.73)S(-91.3)S(-76.88)S(-70.06)S(-56.13)AS(-54.84)PS(-22.84)S(22.84)PS(-30.3)S(-44.99)REEK 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.691284179688 3 592.914303 1775.72108 35916.6002791873 1.4838 0.00087978 257670 152.77 257670 152.78 745.689102240529 26.642 0.34713 26.642 26.423 26.771 -3.5527E-15 26 11 3 0.743132106786963 0.00454529770974975 0.0266753651435123 4.8296E-11 1 5921 198.35 162.01 10 45931000 17190 10362 18114 8133.3 6388.5 18474 8311.4 13736 9926.9 2361.6 16269 9775.8 18047 8653.2 7204.1 18001 8412.2 14033 9726.4 2541.7 1 1 1 1 1 1 1 1 1 1 5063 2072 4466 4757 5618 5618 3753 SSSSSQESLNRPFSSK 16 Phospho (STY) _SSSS(ph)SQESLNRPFSSK_ SSS(0.004)S(0.498)S(0.498)QESLNRPFSSK S(-52.4)S(-52.4)S(-20.94)S(0)S(0)QES(-41.95)LNRPFS(-107.84)S(-113.87)K 0 0 1 1 O75122 O75122 O75122 CLASP2 CLIP-associating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 756.042602539063 3 603.266789 1806.77854 35469.5832175729 1.3171 0.00079456 253250 152.78 253250 152.78 756.376513694983 50.472 0.72393 50.472 50.183 50.907 0 76 24 5 0.975909852805563 0.00219759464919629 0.014225345936214 1.3694E-10 1 11686 180.41 154.82 8 95493000 17461 32271 16165 32104 17256 17048 18005 22997 32033 17655 16518 30484 16367 32732 17471 17868 18676 23369 31012 17156 1 1 1 1 1 1 1 1 1 1 5064 168 4467 4758 5619 5619 291;292 SSSSSQESLNRPLSAK 16 Phospho (STY) _SSSSS(ph)QESLNRPLSAK_ SSSS(0.021)S(0.979)QESLNRPLSAK S(-75.73)S(-74.46)S(-33.29)S(-16.78)S(16.78)QES(-75.73)LNRPLS(-172.01)AK 0 0 1 1 Q7Z460 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.717834472656 3 586.607034 1756.79927 36395.3357066842 2.1393 0.0012549 260440 152.78 260440 152.78 739.71659701865 46.898 0.40787 46.898 46.714 47.122 -7.1054E-15 48 13 5 0.964479895607596 0.00673719525782978 0.0238829767491704 3.8886E-16 1 10832 235.5 193.12 7 45761000 17448 50641 19358 48165 36031 22672 34322 36657 57793 7900.3 16517 47825 19584 49196 35578 24054 35662 36466 56029 8287.5 1 1 1 1 1 1 1 1 1 1 5065 1338 4468 4759 5620 5620 2418 SSSSSSQPEHSAMLVSTAASPSLIK 25 Phospho (STY) _SSSSSS(ph)QPEHSAMLVSTAASPSLIK_ S(0.001)S(0.001)S(0.003)S(0.015)S(0.113)S(0.868)QPEHSAMLVSTAASPSLIK S(-31.74)S(-31.74)S(-24.7)S(-17.61)S(-8.85)S(8.85)QPEHS(-48.94)AMLVS(-161.55)T(-189.85)AAS(-251.14)PS(-275.08)LIK 0 0 1 0 P42166 P42166 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1010.17810058594 3 857.066564 2568.17786 31070.726359819 1.4276 0.0012236 178250 152.78 178260 152.78 1010.5104718054 76.667 0.58219 76.667 76.359 76.941 1.4211E-14 80 19 5 0.98377222141322 0.00425855518003269 0.0678233045682714 8.5532E-34 1 17971 322.61 290.27 11 23074000 2877.1 4813.5 3377.2 3764.2 4465.1 5400.1 20917 11606 4015 13864 2724.4 4541.2 3416.2 3955.3 4683.6 5443.7 20038 11819 4678.5 13323 1 1 1 1 1 1 1 1 1 1 5066 581 4469 4760 5621 5621 938 SSSSVGGLSVSSR 13 Phospho (STY) _SSS(ph)SVGGLSVSSR_ S(0.011)S(0.011)S(0.962)S(0.017)VGGLSVSSR S(-19.54)S(-19.54)S(17.53)S(-17.53)VGGLS(-104.37)VS(-137.2)S(-157.95)R 0 0 1 0 Q92608 Q92608 Q92608 DOCK2 Dedicator of cytokinesis protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.871948242188 2 645.290289 1288.56602 35691.8514670531 1.1139 0.0007188 177560 114.58 177570 114.58 759.871706394821 47.623 0.42865 47.623 47.433 47.862 0 36 14 3 0.856743186802477 0.00279930132407266 0.0689127689006388 6.4864E-16 1 11049 232.22 194.99 7 50847000 46764 17114 49292 19679 46302 52078 51532 40532 20267 69301 44260 16181 49462 20569 47209 50740 51348 43193 21323 66194 1 1 1 1 1 1 1 1 1 1 5067 1605 4470 4761 5622 5622 2952 SSSSVTTSETQPCTPSSSDYSDLQR 25 Phospho (STY) _S(ph)SSSVTTSETQPCTPSSSDYSDLQR_ S(0.436)S(0.436)S(0.124)S(0.005)VTTSETQPCTPSSSDYSDLQR S(0)S(0)S(-5.47)S(-19.42)VT(-55.97)T(-80)S(-94.1)ET(-124.15)QPCT(-201.1)PS(-212)S(-217.03)S(-221.17)DY(-231.69)S(-232.35)DLQR 0 0 1 0 P50552 P50552 P50552 VASP Vasodilator-stimulated phosphoprotein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1006.10437011719 3 929.714807 2786.12259 31888.3116920997 0.48776 0.00045348 82162 76.387 82163 76.388 1006.43606177702 51.836 0.37881 51.836 51.633 52.011 -7.1054E-15 23 12 3 0.966463159181961 0.000952775246458935 0.00770186834433349 1.955E-19 2 12077 250.19 231.73 14 39803000 3369.4 4526 3731 3913 7872.3 3300.7 7404.3 6569.2 4625.1 8234.3 3189.7 4272.1 3785.9 4045.3 7735 3392.3 7483.3 6710.9 4681.4 7905.6 2 2 2 2 2 2 2 2 2 2 5068 665 4471 4762 5623;5624 5624 1123;1124 SSSTELLSHYDSDIK 15 Phospho (STY) _SSS(ph)TELLSHYDSDIK_ S(0.001)S(0.033)S(0.96)T(0.006)ELLSHYDSDIK S(-32.11)S(-14.65)S(14.65)T(-21.77)ELLS(-89.02)HY(-222.62)DS(-193.45)DIK 0 0 1 0 Q53QZ3 Q53QZ3 Q53QZ3 ARHGAP15 Rho GTPase-activating protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.7001953125 3 587.92414 1760.75059 36462.6704751184 1.6393 0.00096379 259860 152.78 259860 152.78 740.699229977496 70.441 0.75444 70.441 70.13 70.884 0 65 25 3 0.934900484193821 0.00394902259561024 0.00987680360150021 4.95E-43 1 16532 360.83 315.61 7 87971000 30622 4785.7 30432 5478.4 33425 42994 62772 39647 3604.6 10966 28975 4524.9 30746 6185.6 34102 41400 60867 40229 6066.1 11244 1 1 1 1 1 1 1 1 1 1 5069 1155 4472 4763 5625 5625 2005 SSSTGSSSSTGGGGQESQPSPLALLAATCSR 31 Phospho (STY) _SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR_ SSSTGSSSSTGGGGQES(0.007)QPS(0.993)PLALLAATCSR S(-102.01)S(-102.01)S(-97.95)T(-93.76)GS(-84.5)S(-79.94)S(-74.69)S(-69.28)T(-63.72)GGGGQES(-21.57)QPS(21.57)PLALLAAT(-49.67)CS(-59.97)R 0 0 1 0 P08047 P08047 P08047 SP1 Transcription factor Sp1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1079.16528320313 3 1002.44331 3004.3081 30195.6722632372 1.1969 0.0011999 76201 76.387 76202 76.389 1079.16504765245 86.151 0.57706 86.151 85.814 86.391 0 85 19 6 0.987372179413448 0.00592853337325297 0.175166118100645 1.1157E-07 1 20072 147.51 136.51 13 37749000 2867.2 3011 3137.3 2652.8 2557.1 3059.8 2524.1 3569.8 3067.5 27382 2714.1 2842.4 3136.4 2752.2 2629.3 3106.8 2585.8 4386.1 3003.6 25866 1 1 1 1 1 1 1 1 1 1 5070 327 4473 4764 5626 5626 534 SSSTGSSSSTGGGGQESQPSPLALLAATCSR 31 Phospho (STY) _SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR_ SSSTGSSSSTGGGGQES(0.063)QPS(0.937)PLALLAATCSR S(-85.86)S(-85.86)S(-85.86)T(-86.35)GS(-76.32)S(-70.55)S(-70.55)S(-70.55)T(-64.6)GGGGQES(-11.7)QPS(11.7)PLALLAAT(-52.67)CS(-63.31)R 0 0 1 0 P08047 P08047 P08047 SP1 Transcription factor Sp1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.379455566406 4 752.084302 3004.3081 35736.4346587393 1.3251 0.00099661 76176 57.291 76177 57.292 809.625118108178 86.154 0.46374 86.154 85.9 86.363 0 49 15 4 0.94310522171034 0.00201025496874019 0.101007550830382 9.8144E-08 1 20091 148.19 132.67 13 10125000 3571.5 2889.7 2496.8 4489.1 4032.4 3354.1 3728.6 4046.3 3795.6 13465 3375.5 2738.9 2594.2 4493.5 3997.2 3446.7 3811.8 4437.7 3742.3 12773 1 1 1 1 1 1 1 1 1 1 5071 327 4473 4764 5627 5627 534 SSSVGSSSSYPISPAVSR 18 Phospho (STY) _SSS(ph)VGSSSSYPISPAVSR_ S(0.163)S(0.163)S(0.674)VGSSSSYPISPAVSR S(-6.17)S(-6.17)S(6.17)VGS(-49.12)S(-71.53)S(-95.85)S(-100.33)Y(-120.38)PIS(-148.33)PAVS(-156.89)R 0 0 1 0 Q15149 Q15149 Q15149 PLEC Plectin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.667907714844 3 612.278806 1833.81459 37065.6175459131 1.7216 0.0010541 124760 76.387 124760 76.388 688.666380128641 56.699 0.53004 56.699 56.367 56.897 0 56 17 4 0.980383378419048 0.00636788575484122 0.182419672920338 1.2437E-07 1 13217 157.81 135.61 10 74111000 14886 8683.3 15404 7957.2 8815.5 14970 8533.8 11339 8471.1 5824.9 14088 8198.7 15400 8327.2 9331 14658 8698.5 11690 8361.1 5747.2 1 1 1 1 1 1 1 1 1 1 5072 1061 4474 4765 5628 5628 1832 SSSVSPSASFR 11 Phospho (STY) _SSSVS(ph)PSASFR_ S(0.008)SS(0.005)VS(0.981)PS(0.005)ASFR S(-20.85)S(-38.83)S(-22.53)VS(20.85)PS(-22.53)AS(-68.13)FR 0 0 1 0 Q04727 Q04727 Q04727 TLE4 Transducin-like enhancer protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.83935546875 2 596.255717 1190.49688 37115.2958971446 2.448 0.0014596 192170 114.58 192170 114.58 710.837071909054 46.073 0.5567 46.073 45.761 46.317 0 56 18 4 0.988214174444225 0.00197206314286102 0.0867558189322255 6.2941E-07 1 10589 159.36 126.94 6 45578000 33367 22584 33767 21521 18139 37524 19915 26367 22981 8514.4 31575 21328 33791 22419 19358 36774 20270 27137 22545 8627.5 1 1 1 1 1 1 1 1 1 1 5073 865 4475 4766 5629 5629 1408 SSSVSPSSWK 10 Phospho (STY) _SSSVS(ph)PSSWK_ SSSVS(0.996)PS(0.003)SWK S(-50.43)S(-46.78)S(-33.79)VS(24.92)PS(-24.92)S(-35.22)WK 0 0 1 0 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.405395507813 2 566.239536 1130.46452 35072.9584364872 2.5339 0.0014348 404710 229.16 404710 229.16 795.403375847286 63.677 0.66267 63.677 63.314 63.977 0 57 22 3 0.895306488783682 0.00160741009386825 0.0474069842393882 1.52E-06 1 14918 161.93 131.52 6 27116000 19854 17319 22625 18676 15103 20919 14729 19846 19698 38676 18798 16369 22530 19129 15770 20927 15147 21114 19226 36877 1 1 1 1 1 1 1 1 1 1 5074 1699 4476 4767 5630 5630 3133 SSSVTSIDKESR 12 Phospho (STY) _SSSVTS(ph)IDKESR_ S(0.003)S(0.003)S(0.007)VT(0.098)S(0.889)IDKESR S(-24.9)S(-24.9)S(-20.74)VT(-9.58)S(9.58)IDKES(-47.25)R 0 0 1 1 Q5T5C0 Q5T5C0 Q5T5C0 STXBP5 Syntaxin-binding protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 612.318542480469 3 459.208211 1374.6028 38025.3532975058 1.8083 0.0008304 332690 152.78 332690 152.78 611.983563376681 41.329 0.48821 41.329 41.052 41.54 7.1054E-15 40 16 3 0.84736652289103 0.00478818000836683 0.0472053320963316 0.011901 1 9412 65.113 46.038 6 37885000 13943 19384 12906 18686 30546 16206 37985 22612 20511 3096.7 13190 18307 13285 19189 30046 16441 37830 22527 20980 3439.2 1 1 1 1 1 1 1 1 1 1 5075 1185 4477 4768 5631 5631 2076;2077 SSSVTSIDKESR 12 2 Phospho (STY) _SSS(ph)VTS(ph)IDKESR_ S(0.107)S(0.145)S(0.748)VT(0.255)S(0.746)IDKESR S(-8.36)S(-6.98)S(6.98)VT(-4.55)S(4.55)IDKES(-54.19)R 0 0 2 1 Q5T5C0 Q5T5C0 Q5T5C0 STXBP5 Syntaxin-binding protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.640625 3 485.863654 1454.56913 39094.0790873891 1.8465 0.00089714 314440 152.77 314440 152.78 638.638673692527 42.793 1.7725 42.793 42.308 44.08 0 96 60 2 0.922610047983218 0.00291569861828184 0.0231508841016629 0.0029881 2 9720 93.777 75.412 15 55273000 19354 24541 17360 26456 56780 17236 56337 35126 23261 8349.6 18306 23194 18077 26900 55255 17928 56461 34792 24354 8675 2 2 2 2 2 2 2 2 2 2 5076 1185 4477 4769 5632;5633 5632 2076;2077 SSTDSLPGPISR 12 Phospho (STY) _S(ph)STDSLPGPISR_ S(0.969)S(0.031)TDSLPGPISR S(14.97)S(-14.97)T(-35.52)DS(-66.51)LPGPIS(-184.93)R 0 0 1 0 Q9HCD5 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.380981445313 2 648.795207 1295.57586 35958.3211459674 1.6588 0.0010762 176610 114.58 176610 114.58 763.377055128934 56.359 0.56672 56.359 56.067 56.634 7.1054E-15 50 18 4 0.932313960290881 0.00168326359154587 0.0516540955151277 3.1964E-16 1 13141 236.5 192.29 5 25369000 16368 21449 19262 20411 18309 19523 17415 21963 23092 22615 15499 20256 19216 21007 18629 19682 17925 22617 22544 21803 1 1 1 1 1 1 1 1 1 1 5077 1985 4478 4770 5634 5634 3607 SSTFPQTDVLSSSLEAEHR 19 Phospho (STY) _SSTFPQTDVLSSS(ph)LEAEHR_ SSTFPQTDVLS(0.001)S(0.069)S(0.93)LEAEHR S(-162.33)S(-162.33)T(-158.13)FPQT(-111.02)DVLS(-28.96)S(-11.28)S(11.28)LEAEHR 0 0 1 0 Q86WP2 Q86WP2 Q86WP2 GPBP1 Vasculin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.048889160156 3 724.326596 2169.95796 34154.4754210782 1.8914 0.00137 105460 76.387 105460 76.388 801.047252689836 67.948 0.7136 67.948 67.587 68.3 0 72 23 4 0.93098016587021 0.0034989115618309 0.0315587396632365 2.6415E-11 1 15914 198.83 171.92 7 25675000 6646 5716.6 4839.5 6314.1 8551.5 4887 8983.4 7091 6155.5 16750 6282 5403.7 5023.3 6423.8 8462.4 5021.3 9046.1 7532.1 6193.6 15936 1 1 1 1 1 1 1 1 1 1 5078 1391 4479 4771 5635 5635 2530 SSTPEEVK 8 Phospho (STY) _SST(ph)PEEVK_ S(0.289)S(0.011)T(0.7)PEEVK S(-3.84)S(-18.22)T(3.84)PEEVK 0 0 1 0 P23528 P23528 P23528 CFL1 Cofilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.866943359375 2 478.702255 955.389957 37189.1722636267 2.2824 0.0010926 478720 229.16 478720 229.16 707.865494027419 37.912 0.37824 37.912 37.714 38.093 0 36 12 4 0.915692444127957 0.00142003784763293 0.0345022080092569 2.3769E-05 1 8561 155.06 113.61 3 22518000 19349 22480 17987 23505 29346 16927 29785 24233 23924 4754.1 18304 21242 18330 23966 29110 17361 30137 24167 23855 5037.4 1 1 1 1 1 1 1 1 1 1 5079 467 4480 4772 5636 5636 763;4427 SSTPLPTISSSAENTR 16 Phospho (STY) _SST(ph)PLPTISSSAENTR_ S(0.016)S(0.027)T(0.957)PLPTISSSAENTR S(-17.91)S(-15.49)T(15.49)PLPT(-59.04)IS(-95.55)S(-100.77)S(-105.98)AENT(-159.14)R 0 0 1 0 P42166;P42167 P42166;P42167 P42167 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.480285644531 2 864.396013 1726.77747 31498.0511756345 1.1925 0.0010308 132560 114.58 132560 114.58 978.977640491256 54.265 0.72344 54.265 53.859 54.582 7.1054E-15 105 24 6 0.991515807775341 0.00317704909961736 0.0850798254367896 9.4164E-16 1 12599 233.28 187.39 8 380160000 13857 15084 15094 16323 8405.5 14210 9487.8 14501 15856 7346.1 13117 14256 15048 16650 8946.1 14355 9780.2 14756 15375 7252.8 1 1 1 1 1 1 1 1 1 1 5080 582;581 4481 4773 5637 5637 939;940;4460 SSTPLPTISSSAENTR 16 Phospho (STY) _SSTPLPTISSS(ph)AENTR_ SSTPLPTISS(0.036)S(0.964)AENTR S(-157.93)S(-142.16)T(-118.25)PLPT(-79.56)IS(-41.53)S(-14.29)S(14.29)AENT(-63.54)R 0 0 1 0 P42166;P42167 P42166;P42167 P42167 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.480834960938 2 864.396013 1726.77747 32043.2530405697 1.6485 0.0014249 132560 114.58 132560 114.58 979.479224116618 59.31 0.57334 59.31 59.075 59.649 0 51 19 3 0.983361145486411 0.00207942908353357 0.0886383611129552 9.5508E-23 1 13904 271.45 220.32 8 26594000 9511.3 10087 11273 9998.8 13818 9276.3 14250 11328 10790 7982.2 9006.7 9528.6 11282 10260 13875 9371.1 14390 11524 10794 7778.4 1 1 1 1 1 1 1 1 1 1 5081 582;581 4481 4773 5638 5638 939;940;4460 SSTPLPTISSSAENTR 16 Phospho (STY) _S(ph)STPLPTISSSAENTR_ S(0.796)S(0.169)T(0.036)PLPTISSSAENTR S(6.74)S(-6.74)T(-13.48)PLPT(-70.26)IS(-88.89)S(-94.1)S(-99.27)AENT(-136.43)R 0 0 1 0 P42166;P42167 P42166;P42167 P42167 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.481750488281 2 864.396013 1726.77747 31559.0240029347 1.1601 0.0010028 132560 114.58 132560 114.58 978.977168727166 60.727 0.52423 60.727 60.398 60.923 0 50 17 4 0.980768805331119 0.00134654676862418 0.0335921219969626 1.6467E-08 1 14210 175.43 136.42 8 29862000 9666.2 8564.5 10762 8640.3 9793.8 11112 11302 10491 7901.9 11091 9150.8 8091 10765 8906.7 10014 11041 11339 10881 7941.1 10687 1 1 1 1 1 1 1 1 1 1 5082 582;581 4481 4773 5639 5639 939;940;4460 SSTPPGESYFGVSSLQLK 18 Phospho (STY) _SST(ph)PPGESYFGVSSLQLK_ S(0.049)S(0.137)T(0.814)PPGESYFGVSSLQLK S(-12.2)S(-7.73)T(7.73)PPGES(-86.26)Y(-139.16)FGVS(-201.28)S(-211.33)LQLK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.417724609375 3 655.306473 1962.89759 34712.0566232273 1.7077 0.0011191 233140 152.78 233140 152.78 808.416022054188 95.359 2.2956 95.359 94.284 96.58 0 288 79 7 0.974119883519487 0.00851546170174232 0.227465486240864 5.1437E-16 3 22277 235.37 214.99 7 1210500000 46533 60624 66483 63447 45262 56541 59270 70100 68659 67909 44107 57286 65564 64862 47392 57280 59916 71836 67348 65566 3 3 3 3 3 3 3 3 3 3 5083 2226 4482 4774 5640;5641;5642 5642 4110;4111;4833 SSTPPGESYFGVSSLQLK 18 Phospho (STY) _S(ph)STPPGESYFGVSSLQLK_ S(0.309)S(0.309)T(0.309)PPGES(0.072)Y(0.002)FGVSSLQLK S(0)S(0)T(0)PPGES(-6.33)Y(-21.97)FGVS(-39.79)S(-47.7)LQLK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 808.750915527344 3 655.306473 1962.89759 35044.4019353452 2.0036 0.001313 233140 152.78 233140 152.78 808.415801350714 96.894 0.63593 96.894 96.549 97.185 0 57 21 4 0.773088362713184 0.000936533484320465 0.0109817906257954 0.014044 1 22544 63.827 45.463 7 8165100 4114.9 4538.4 3122.8 3626.2 3854.1 3997.7 3347.3 4594 4647.2 11952 3890 4282.1 3209.6 3784.9 3862 4020.5 3467.2 4945.2 4530.3 11361 1 1 1 1 1 1 1 1 1 1 5084 2226 4482 4774 5643 5643 4110;4111;4833 SSTPPRQSPSR 11 2 Phospho (STY) _SST(ph)PPRQS(ph)PSR_ S(0.074)S(0.09)T(0.837)PPRQS(0.918)PS(0.082)R S(-10.67)S(-9.78)T(9.78)PPRQS(10.67)PS(-10.67)R 0 0 2 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.860412597656 2 680.276331 1358.53811 34897.1167190811 2.3039 0.0015673 168430 114.58 168440 114.58 794.857783716275 22.683 0.4916 22.683 22.342 22.834 0 33 16 3 0.965531883934976 0.000734179471981997 0.00543477854241547 0.017145 1 5091 64.121 31.122 10 2261700 1540.5 1771.7 1488.9 1596 908.57 1184.6 511.41 1530.5 1496.2 1906.4 1457.5 1672.7 1494.4 1642.9 951.6 1213.7 566.61 1579.3 1434.5 1830.5 1 1 1 1 1 1 1 1 1 1 5085 2226 4483 4775 5644 5644 4112;4834 SSTSFANIQENSN 13 Phospho (STY) _SSTS(ph)FANIQENSN_ S(0.037)S(0.037)T(0.167)S(0.758)FANIQENSN S(-13.07)S(-13.07)T(-6.56)S(6.56)FANIQENS(-117.34)N 0 0 1 0 Q86WC4 Q86WC4 Q86WC4 OSTM1 Osteopetrosis-associated transmembrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.372924804688 2 739.793392 1477.57223 33851.2522404688 1.2765 0.00094436 154880 114.58 154880 114.58 854.370537396113 55.875 0.41429 55.875 55.653 56.067 0 33 13 3 0.993494609353375 0.00117794309589615 0.0180029862371332 1.3112E-07 1 13046 171.54 149.99 5 30169000 19793 16816 19200 17893 16748 20100 16634 18925 19151 16011 18727 15892 19337 18342 17142 20064 17006 19511 18790 15514 1 1 1 1 1 1 1 1 1 1 5086 1388 4484 4776 5645 5645 2524;2525;2526 SSTSPCGTSK 10 Phospho (STY) _SSTS(ph)PCGTSK_ SST(0.067)S(0.932)PCGTSK S(-36.42)S(-38.09)T(-11.42)S(11.42)PCGT(-47.99)S(-51.78)K 0 0 1 0 O75376 O75376 O75376 NCOR1 Nuclear receptor corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.374267578125 2 546.207379 1090.4002 33165.4828411644 2.5978 0.0014189 419550 229.16 419560 229.17 775.372080228808 29.993 0.29778 29.993 29.835 30.133 0 18 9 3 0.790435908639887 0.000769757339254998 0.0323610312168559 0.0001786 1 6699 124.06 86.556 6 8838400 15755 11786 14458 12982 15315 15471 17193 15713 11771 7011.6 14904 11141 14647 13297 15513 15412 17262 15963 11845 6965.9 1 1 1 1 1 1 1 1 1 1 5087 180 4485 4777 5646 5646 314 SSTVTEAPIAVVTSR 15 Phospho (STY) _S(ph)STVTEAPIAVVTSR_ S(0.333)S(0.333)T(0.333)VT(0.001)EAPIAVVTSR S(0)S(0)T(0)VT(-24.26)EAPIAVVT(-83.78)S(-83.41)R 0 0 1 0 Q8TD19 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.654846191406 3 533.265949 1596.77602 41396.8668672141 1.8249 0.00097316 143250 76.388 143250 76.389 609.653801943043 74.281 0.43554 74.281 73.983 74.419 0 23 14 2 0.631943701762766 0.00106284412628451 0.0387176608784517 0.0060025 1 17450 85.203 62.67 6 5272500 5015.1 4213.2 5261.7 5538.8 5245 4311.9 4559.3 5197.1 4312 3790.2 4746.5 3987.6 5282.6 5586.4 5313.7 4395.1 4667.1 5292.9 4265.2 3689.2 1 1 1 1 1 1 1 1 1 1 5088 1546 4486 4778 5647 5647 2837;2838;4699 SSTWGTVK 8 Phospho (STY) _S(ph)STWGTVK_ S(0.776)S(0.095)T(0.095)WGT(0.034)VK S(9.11)S(-9.11)T(-9.11)WGT(-13.62)VK 0 0 1 0 Q8NEQ6 Q8NEQ6 Q8NEQ6 C1orf64 Uncharacterized protein C1orf64 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 702.371643066406 2 473.207508 944.400462 37171.8197955258 1.9908 0.00094205 484280 229.16 484280 229.16 702.370621215253 59.605 0.91851 59.605 59.105 60.023 -7.1054E-15 100 31 4 0.981663956778466 0.00555613172797673 0.174560786155049 0.052426 1 13931 49.444 10.894 4 88919000 83219 36500 85987 34151 24577 83898 23350 46400 38373 7773.5 78757 34467 85671 36007 28563 81420 24239 48230 37226 8393.6 1 1 1 1 1 1 1 1 1 1 5089 1517 4487 4779 5648 5648 2783 SSVEKENQK 9 Phospho (STY) _S(ph)SVEKENQK_ S(0.81)S(0.19)VEKENQK S(6.29)S(-6.29)VEKENQK 0 0 1 1 Q13427 Q13427 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.999145507813 3 376.835937 1127.48598 39430.1647159533 1.5956 0.00060127 608120 229.16 608130 229.16 605.9989165073 33.902 0.40418 33.902 33.73 34.134 0 44 13 4 0.929032486174593 0.00539830574257571 0.0481543128731554 0.0022485 1 7591 95.094 64.763 2 51243000 31618 45717 36177 42417 39546 41065 45993 41869 51016 2800.1 29936 43169 36220 43732 40029 41238 46645 42051 50124 3605.7 1 1 1 1 1 1 1 1 1 1 5090 952 4488 4780 5649 5649 1589;1590 SSVKTPEPVVPTAPELQPSTSTDQPVTSEPTSQVTR 36 Phospho (STY) _S(ph)SVKTPEPVVPTAPELQPSTSTDQPVTSEPTSQVTR_ S(0.386)S(0.386)VKT(0.207)PEPVVPT(0.021)APELQPSTSTDQPVTSEPTSQVTR S(0)S(0)VKT(-2.72)PEPVVPT(-12.69)APELQPS(-104.13)T(-109.87)S(-115.55)T(-121.15)DQPVT(-173.69)S(-178.21)EPT(-189.41)S(-192.33)QVT(-197.33)R 0 0 1 1 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1080.306640625 4 965.222761 3856.86194 30228.9618491589 1.5946 0.0015392 118710 114.58 118710 114.58 1080.30557177924 71.159 0.39798 71.159 70.974 71.372 0 60 13 6 0.969606165289765 0.00314116293117558 0.0332585144760833 4.5662E-18 1 16703 214.9 203.97 13 27783000 2871.6 5239.2 3868 5507.1 4162.8 3971.5 6364.1 6011.7 5746.5 17836 2721 4950.8 3845.3 5613.5 4237.5 4108.5 6355.5 6488.5 5696.3 16934 1 1 1 1 1 1 1 1 1 1 5091 1016 4489 4781 5650 5650 1732;1733 SSVKTPESIVPIAPELQPSTSR 22 Phospho (STY) _SSVKT(ph)PESIVPIAPELQPSTSR_ S(0.074)S(0.074)VKT(0.85)PES(0.002)IVPIAPELQPSTSR S(-10.6)S(-10.6)VKT(10.6)PES(-25.97)IVPIAPELQPS(-85.48)T(-85.48)S(-85.48)R 0 0 1 1 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.519897460938 3 801.74375 2402.20942 31935.8767653675 1.6853 0.0013512 190550 152.78 190560 152.78 954.855388974908 82.741 0.5141 82.741 82.486 83 0 45 17 3 0.907068575253083 0.00285008572742908 0.0443645888967843 0.00053731 1 19343 100.98 79.181 7 20756000 9835.7 9840.4 9728.6 9920.9 8595.1 9313.3 8790.2 8999 9516.8 17559 9306.7 9296.3 9788.8 10172 8792.7 9391.5 8958.2 9567.9 9359.4 16742 1 1 1 1 1 1 1 1 1 1 5092 1016 4490 4782 5651 5651 1734;1735;4560 SSVKTPESIVPIAPELQPSTSR 22 Phospho (STY) _S(ph)SVKTPESIVPIAPELQPSTSR_ S(0.5)S(0.5)VKT(0.001)PESIVPIAPELQPSTSR S(0)S(0)VKT(-28.66)PES(-48.12)IVPIAPELQPS(-126.48)T(-126.48)S(-126.48)R 0 0 1 1 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 954.854736328125 3 801.74375 2402.20942 31847.9514450672 1.4935 0.0011974 190550 152.78 190560 152.78 954.853544807184 84.837 0.5195 84.837 84.579 85.098 0 33 17 2 0.570167004100086 0.00160160308637074 0.0444430960913439 6.6566E-06 1 19863 135.1 120.76 7 27575000 5250.2 6630.1 5667.9 7139.8 7379.7 6107.1 7301.3 7655.3 7990.2 21553 4969.6 6266.1 5704.1 7283.2 7387.4 6227.5 7454.8 8268.2 7854.7 20472 1 1 1 1 1 1 1 1 1 1 5093 1016 4490 4782 5652 5652 1734;1735;4560 SSVKTPETVVPTALELQPSTSTDRPVTSEPTSQATR 36 Phospho (STY) _SS(ph)VKTPETVVPTALELQPSTSTDRPVTSEPTSQATR_ S(0.177)S(0.823)VKTPETVVPTALELQPSTSTDRPVTSEPTSQATR S(-6.69)S(6.69)VKT(-46.25)PET(-87.47)VVPT(-160.55)ALELQPS(-249.65)T(-255.01)S(-254.57)T(-254.57)DRPVT(-263.92)S(-263.92)EPT(-268.32)S(-267.97)QAT(-267.97)R 0 0 1 2 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1085.31713867188 4 970.232123 3876.89939 30142.3705241572 1.3561 0.0013157 118100 114.58 118100 114.58 1085.31537918066 75.665 0.48922 75.665 75.431 75.92 0 64 16 7 0.945295089351108 0.00496531627662047 0.0751300046763672 8.9421E-35 1 17747 294.97 264.34 14 22583000 3623.4 4957.7 3847.1 4880.4 6797.7 3885.2 8314.7 6054 4563.4 19923 3429.5 4682.9 3900 4999.8 6742 4003.4 8288.1 6588.9 4661.8 18900 1 1 1 1 1 1 1 1 1 1 5094 1016 4491 4783 5653 5653 1736 SSVLPSPSGR 10 Phospho (STY) _SSVLPS(ph)PSGR_ SSVLPS(0.824)PS(0.176)GR S(-47.62)S(-41.97)VLPS(6.7)PS(-6.7)GR 0 0 1 0 P35658 P35658 P35658 NUP214 Nuclear pore complex protein Nup214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.332458496094 2 533.750071 1065.48559 39087.733834343 1.83 0.00097676 214670 114.58 214670 114.58 648.330536413681 51.06 0.84177 51.06 50.647 51.488 0 63 28 3 0.978732931267038 0.000967071255576933 0.0131828233774574 0.024944 1 11887 61.523 49.297 4 9031800 15048 16356 15260 15177 12910 15202 13869 15524 16931 6260.1 14240 15444 15327 15656 13256 15252 14155 15747 16576 6253.9 1 1 1 1 1 1 1 1 1 1 5095 551 4492 4784 5654 5654 898 SSVVFADEK 9 Phospho (STY) _SS(ph)VVFADEK_ S(0.156)S(0.844)VVFADEK S(-7.33)S(7.33)VVFADEK 0 0 1 0 Q92608 Q92608 Q92608 DOCK2 Dedicator of cytokinesis protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.39453125 2 531.23118 1060.44781 35650.998413718 2.1874 0.001162 431380 229.16 431380 229.16 760.394694842172 66.686 0.65874 66.686 66.403 67.062 0 55 22 3 0.909688454446211 0.00311747266467375 0.107564252400757 3.538E-09 1 15631 189.87 137.32 2 66059000 33214 17024 30179 13385 60791 29172 63867 39140 12497 12742 31418 16062 30944 14219 59878 28685 63457 39258 14509 12904 1 1 1 1 1 1 1 1 1 1 5096 1605 4493 4785 5655 5655 2950;2951 STAGDTHLGGEDFDNR 16 Unmodified _STAGDTHLGGEDFDNR_ 0 0 0 0 P11142;P54652 P11142 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.967468261719 3 564.580045 1690.71831 39548.1591848316 1.4895 0.00084091 135300 76.388 135300 76.389 640.967840244295 41.021 0.68167 41.021 40.658 41.339 -7.1054E-15 77 23 6 0.915401762311683 0.00231142860102523 0.0147284211152741 7.295E-16 1 9332 225.6 207.19 1 81466000 18054 19065 14850 15768 16969 18622 18861 20361 17186 4366.1 17072 17991 15167 16437 17121 18568 19062 20487 17028 4582.4 1 1 1 1 1 1 1 1 1 1 5097 359 4494 4786 5656 5656 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 Phospho (STY) _STAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR_ STAPSAAASASASAAAS(0.006)S(0.994)PAGGGAEALELLEHCGVCR S(-217.18)T(-217.18)APS(-212.21)AAAS(-180.72)AS(-148.46)AS(-101.61)AAAS(-22.5)S(22.5)PAGGGAEALELLEHCGVCR 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.939819335938 4 881.396083 3521.55522 31870.3946810384 1.2121 0.0010684 65000 57.291 65001 57.292 938.938331824379 87.718 3.0161 87.718 87.263 90.279 1.4211E-14 438 103 8 0.981989382393406 0.0156127162950538 0.227481186005222 7.4832E-46 5 20408 328.85 307.32 8 920230000 14501 20736 11065 25392 14747 13635 18576 21409 27144 93592 13709 19615 11391 25599 14810 14466 18960 23994 26420 88623 5 5 5 5 5 5 5 5 5 5 5098 942 4495 4787 5657;5658;5659;5660;5661 5658 1565 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 Phospho (STY) _STAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR_ STAPSAAASASAS(0.001)AAAS(0.177)S(0.822)PAGGGAEALELLEHCGVCR S(-68.42)T(-68.42)APS(-65.65)AAAS(-49.87)AS(-43.12)AS(-31.59)AAAS(-6.66)S(6.66)PAGGGAEALELLEHCGVCR 0 0 1 0 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1252.26818847656 3 1174.85902 3521.55522 27477.2646399577 1.0678 0.0012545 65020 76.389 65021 76.39 1251.91623527628 87.714 0.98924 87.714 87.349 88.338 -1.4211E-14 157 33 7 0.98767255051499 0.00492980172221955 0.0903796718825204 0.0024131 1 20412 88.226 75.735 8 135050000 1456.8 5330 1550.1 6207.6 2136.9 1842.4 3124.1 3522 6697.8 17592 1378.9 5040.1 1564.6 6250.1 2151.3 2095.7 3230.5 3997.8 6457.2 16647 1 1 1 1 1 1 1 1 1 1 5099 942 4495 4787 5662 5662 1565 STASPASTK 9 Phospho (STY) _STAS(ph)PASTK_ STAS(1)PASTK S(-45.49)T(-46.8)AS(37.67)PAS(-37.67)T(-61.89)K 0 0 1 0 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.366333007813 2 465.202422 928.390292 37030.8325527137 2.6123 0.0012153 492610 229.16 492610 229.16 694.365125491894 31.103 0.48205 31.103 30.819 31.301 0 48 15 4 0.884499147878928 0.00491055417004497 0.21136345563585 6.9828E-06 2 6932 146.79 101.22 5 71276000 42947 59493 43330 61559 73947 40242 70415 60699 65073 5982.1 40640 56213 43977 62738 73179 41556 71699 60273 64435 7037.7 2 2 2 2 2 2 2 2 2 2 5100 2190 4496 4788 5663;5664 5664 3967 STDSEVSQSPAK 12 Phospho (STY) _STDSEVSQS(ph)PAK_ STDSEVSQS(1)PAK S(-99.57)T(-99.57)DS(-83.15)EVS(-42.78)QS(42.78)PAK 0 0 1 0 O75175 O75175 O75175 CNOT3 CCR4-NOT transcription complex subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.961242675781 3 439.185295 1314.53406 40459.8088262073 0.90125 0.00039582 347860 152.78 347860 152.78 591.960780814895 34.872 0.42981 34.872 34.662 35.092 0 59 14 6 0.978945238862592 0.0116366441049189 0.174476035245493 2.1383E-07 1 7829 156.17 142.51 5 87865000 23448 28193 27698 31364 15662 23075 17459 25433 34443 4133.6 22204 26651 27502 31877 16646 23537 18151 25545 33264 4480.9 1 1 1 1 1 1 1 1 1 1 5101 174 4497 4789 5665 5665 301 STDSSSVSGSLQQETK 16 Phospho (STY) _ST(ph)DSSSVSGSLQQETK_ S(0.273)T(0.534)DS(0.192)S(0.001)SVSGSLQQETK S(-2.92)T(2.92)DS(-4.44)S(-29.27)S(-46.39)VS(-121.53)GS(-148.5)LQQET(-294.78)K 0 0 1 0 Q9H8G2 Q9H8G2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.024291992188 3 574.247283 1719.72002 35955.8719999707 1.7579 0.0010095 266040 152.77 266050 152.78 727.022428624765 50.065 0.49507 50.065 49.747 50.242 7.1054E-15 45 16 4 0.992937908847275 0.00303934624198926 0.0320067162153328 2.1681E-31 1 11614 308.93 295.5 8 35605000 20047 12923 21772 12505 16424 21689 16930 17688 15102 9024.9 18976 12205 21759 13013 16989 21297 17159 18169 14979 8907.4 1 1 1 1 1 1 1 1 1 1 5102 1958 4498 4790 5666 5666 4769 STDTGVSLPSYEEDQGSK 18 Acetyl (Protein N-term) _(ac)STDTGVSLPSYEEDQGSK_ 1 0 0 0 Q9Y241 Q9Y241 Q9Y241 HIGD1A HIG1 domain family member 1A, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1086.01281738281 2 971.431632 1940.84871 29649.6041533216 1.4257 0.001385 117950 114.58 117950 114.58 1086.51481797713 65.189 0.40521 65.189 64.966 65.372 0 42 13 4 0.967004405121803 0.00058249421358665 0.0197915960644271 3.0249E-16 1 15297 128.54 104.16 1 14603000 3194.6 8824.4 3886.6 9151.8 6816.7 4069.8 6695.3 6950.3 8675.1 12167 3025.5 8337.9 3909.5 9295.1 6744.8 4365.2 6875.3 7226.6 8475.8 11618 1 1 1 1 1 1 1 1 1 1 5103 2236 4499 4791 5667 5667 STELLIR 7 Unmodified _STELLIR_ 0 0 0 0 P84243;Q6NXT2;Q71DI3;Q16695;P68431 P84243;Q71DI3 Q71DI3 H3F3A;H3F3C;HIST2H3A;HIST3H3;HIST1H3A Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1t;Histone H3.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.832580566406 2 416.25036 830.486168 43622.2710622566 1.3561 0.00056447 275270 114.58 275270 114.58 530.831949339185 60.245 0.5503 60.245 59.995 60.546 0 43 18 3 0.866025034977145 0.00153762592787461 0.019672141395669 0.049189 1 14118 79.116 28.806 1 19025000 17028 14314 16717 14416 13425 17274 13190 17235 14737 1805 16112 13522 16811 14842 13816 17190 13480 17344 14475 2098.5 1 1 1 1 1 1 1 1 1 1 5104 790;815 4500 4792 5668 5668 STELLIR 7 Phospho (STY) _S(ph)TELLIR_ S(0.992)T(0.008)ELLIR S(20.72)T(-20.72)ELLIR 0 0 1 0 P84243;Q6NXT2;Q71DI3;Q16695;P68431 P84243;Q71DI3 Q71DI3 H3F3A;H3F3C;HIST2H3A;HIST3H3;HIST1H3A Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1t;Histone H3.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 570.81591796875 2 456.233525 910.452498 41847.9611220038 1.7049 0.00077783 251150 114.58 251150 114.58 570.815058146896 67.696 0.64845 67.696 67.387 68.035 0 46 21 3 0.959008229056911 0.00278510783836542 0.0836790482324985 0.00091247 1 15902 124.92 57.753 2 17167000 7908 17801 8564.3 18609 9919.1 8649.3 8210.7 12719 20123 3499.4 7485.4 16820 8599.4 18898 9973 9171.8 8766 12706 19350 3589.5 1 1 1 1 1 1 1 1 1 1 5105 790;815 4500 4793 5669 5669 1264;4500 STEPELIQVK 10 Phospho (STY) _ST(ph)EPELIQVK_ S(0.382)T(0.618)EPELIQVK S(-2.08)T(2.08)EPELIQVK 0 0 1 0 Q15758 Q15758 Q15758 SLC1A5 Neutral amino acid transporter B(0) MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 561.311767578125 3 408.535488 1222.58463 41680.9745791138 1.9547 0.00079856 373960 152.78 373960 152.78 561.310692283338 74.493 0.93116 74.493 74.218 75.149 0 61 31 3 0.940868650625471 0.00255125918727025 0.0581068979596367 2.7014E-06 1 17480 149.41 114 2 18193000 7327.6 10310 8245.8 9983.1 5100 7155.2 5348.2 9099 9756.6 2428.4 6937.2 9738 8212.2 10225 5368.9 7327.2 5552.8 9124.8 9439.9 2497.2 1 1 1 1 1 1 1 1 1 1 5106 1093 4501 4794 5670 5670 4579 STFREESPLR 10 Phospho (STY) _STFREES(ph)PLR_ STFREES(1)PLR S(-88.11)T(-99.03)FREES(88.11)PLR 0 0 1 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 510.922149658203 3 434.53437 1300.58128 43640.6803289572 0.85265 0.00037051 175790 76.388 175790 76.388 510.922522016152 44.302 1.5922 44.302 43.815 45.407 0 209 54 6 0.988429768552536 0.00651235171223489 0.132345736703032 4.7668E-08 2 10123 175.29 112.26 3 1287000000 33713 38032 40359 38990 29854 35857 34003 32320 35978 4054.2 31926 35933 40136 39925 30976 36045 34467 32678 35416 4565.5 2 2 2 2 2 2 2 2 2 2 5107 2072 4502 4795 5671;5672 5671 3745 STFSPAPRPEMPGTVEVESTFLAR 24 Phospho (STY) _STFS(ph)PAPRPEMPGTVEVESTFLAR_ S(0.003)T(0.02)FS(0.977)PAPRPEMPGTVEVESTFLAR S(-24.69)T(-16.98)FS(16.98)PAPRPEMPGT(-70.97)VEVES(-90.33)T(-90.33)FLAR 0 0 1 1 Q92576 Q92576 Q92576 PHF3 PHD finger protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 972.477600097656 3 896.090932 2685.25097 31866.6510379651 1.6288 0.0014596 85244 76.387 85246 76.388 972.812045411517 92.05 0.51505 92.05 91.766 92.281 0 42 17 4 0.869059301940622 0.00131497653172347 0.0274894017010359 3.9863E-05 1 21453 120.93 100.96 6 9370100 3057.5 4721 5522.4 3769.3 3817 5247.6 3351.7 4150.6 4580.8 22103 2902.4 4454.3 5397.2 3952.1 3968.8 5221.8 3467.8 4871.9 4467.7 20908 1 1 1 1 1 1 1 1 1 1 5108 1602 4503 4796 5673 5673 2946 STFSPISDIGLAK 13 Phospho (STY) _S(ph)TFSPISDIGLAK_ S(0.333)T(0.333)FS(0.333)PISDIGLAK S(0)T(0)FS(0)PIS(-34.73)DIGLAK 0 0 1 0 Q8TEK3 Q8TEK3 Q8TEK3 DOT1L Histone-lysine N-methyltransferase, H3 lysine-79 specific MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.341064453125 3 472.565447 1414.67451 NaN NaN NaN NaN NaN NaN NaN NaN 98.81 1 98.81 98.31 99.31 0 NaN NaN NaN 0.023971 1 22932 79.652 48.012 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5109 1552 4504 4797 5674 5674 2850;2851;4701 STGEAFVQFASQEIAEK 17 Unmodified _STGEAFVQFASQEIAEK_ 0 0 0 0 P31943;P55795 P31943 P31943 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.747131347656 3 614.635379 1840.88431 35019.9716764747 1.8797 0.0011553 248560 152.78 248570 152.78 767.744958089711 99.564 0.11422 99.564 99.494 99.609 0 5 3 2 0.600878389196495 0.00243988033818259 0.0345684996244208 4.9493E-05 1 23159 122.14 96.421 1 33563000 11646 13707 13489 13913 12663 14672 13778 14444 15764 25816 11027 12950 13468 14285 12917 14718 14026 15275 15470 24644 1 1 1 1 1 1 1 1 1 1 5110 524 4505 4798 5675 5675 STGGDFGNPLRK 12 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)TGGDFGNPLRK_ S(0.891)T(0.109)GGDFGNPLRK S(9.12)T(-9.12)GGDFGNPLRK 1 0 1 1 P20340 P20340 P20340 RAB6A Ras-related protein Rab-6A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.392822265625 2 685.808649 1369.60274 34238.0411418594 1.3481 0.00092453 167080 114.58 167080 114.58 800.390750837899 65.66 0.91626 65.66 65.314 66.23 0 82 30 4 0.852280567376408 0.0055749996936664 0.174988677253822 2.5659E-07 1 15421 107.15 92.003 2 39845000 37672 23504 38655 26307 32535 42432 31584 31124 27979 19798 35651 22219 38790 27099 33361 41708 32097 32255 27760 19363 1 1 1 1 1 1 1 1 1 1 5111 446 4506 4799 5676 5676 722 STGNFLTLTQAIDK 14 Phospho (STY) _S(ph)TGNFLTLTQAIDK_ S(0.498)T(0.498)GNFLT(0.005)LTQAIDK S(0)T(0)GNFLT(-20.25)LT(-47.99)QAIDK 0 0 1 0 Q9P2J5 Q9P2J5 Q9P2J5 LARS Leucine--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.370544433594 3 530.258794 1587.75455 38614.7704668034 2.2736 0.0012056 288120 152.78 288120 152.78 683.369093765204 100.25 0.22487 100.25 100.14 100.37 -1.4211E-14 19 7 4 0.926975603012265 0.00207277754147541 0.021850711590586 0.0054777 1 23416 86.497 33.969 4 27427000 8592.7 13050 8397.4 11942 7343.8 9456.7 9295.1 10524 11665 20273 8130.1 12321 8457.7 12289 7544.5 9641.4 9432.8 11126 11409 19333 1 1 1 1 1 1 1 1 1 1 5112 2110 4507 4800 5677 5677 3809;4796 STGQLNLSTSPINSSSYLGYNSNAR 25 Phospho (STY) _ST(ph)GQLNLSTSPINSSSYLGYNSNAR_ S(0.43)T(0.57)GQLNLSTSPINSSSYLGYNSNAR S(-1.22)T(1.22)GQLNLS(-41.4)T(-80.55)S(-101.85)PINS(-165.3)S(-181.11)S(-190.89)Y(-216.57)LGY(-229.82)NS(-223.22)NAR 0 0 1 0 O94915 O94915 O94915 FRYL Protein furry homolog-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 981.14013671875 3 904.415132 2710.22357 31430.7320378911 1.8 0.001628 84461 76.388 84463 76.39 981.137013235344 81.926 0.49091 81.926 81.682 82.173 1.4211E-14 77 16 7 0.948900259370256 0.00740400762918934 0.132633212053139 2.5389E-18 1 19149 246.53 203.05 11 60131000 3551.5 2622.3 4039.4 2225.1 2987.9 4184.2 3193.4 4010.2 2991.6 20486 3362.5 2474.9 4026.9 2340.4 3096.9 4143 3235.2 4646.6 2960.4 19383 1 1 1 1 1 1 1 1 1 1 5113 228 4508 4801 5678 5678 4355 STGSATSLASQGER 14 Phospho (STY) _STGS(ph)ATSLASQGER_ STGS(0.987)AT(0.012)SLASQGER S(-33.89)T(-41.24)GS(19.11)AT(-19.11)S(-37.83)LAS(-125.36)QGER 0 0 1 0 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.890747070313 2 716.30921 1430.60387 34222.3177085069 1.5215 0.0010899 159960 114.58 159960 114.58 830.890772514538 37.61 0.45151 37.61 37.44 37.891 -7.1054E-15 45 15 4 0.978365830708472 0.000972545103375276 0.00436036866746939 1.7411E-41 1 8481 334.79 286.8 6 54294000 16633 22268 16905 21976 21649 17349 22948 21498 23487 3428.9 15740 21034 17068 22508 21708 17655 23312 21506 23151 3726.2 1 1 1 1 1 1 1 1 1 1 5114 1180 4509 4802 5679 5679 2052;2053 STGSATSLASQGER 14 Phospho (STY) _S(ph)TGSATSLASQGER_ S(0.784)T(0.15)GS(0.067)ATSLASQGER S(7.19)T(-7.19)GS(-10.71)AT(-71.59)S(-81.47)LAS(-139.01)QGER 0 0 1 0 Q5SW79 Q5SW79 Q5SW79 CEP170 Centrosomal protein of 170 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.89306640625 2 716.30921 1430.60387 33962.6780152599 1.9289 0.0013817 159960 114.58 159960 114.58 831.393470978473 39.248 0.60747 39.248 38.962 39.569 0 60 20 4 0.986322812049433 0.00266777194648445 0.110971223374181 4.8707E-23 1 8915 278.64 241.96 6 31310000 17336 22776 15972 20458 20799 17630 22293 20444 24325 4659.5 16399 21502 16223 21102 20845 17841 22676 20538 23915 4860.6 1 1 1 1 1 1 1 1 1 1 5115 1180 4509 4802 5680 5680 2052;2053 STIGVMVTASHNPEEDNGVK 20 Oxidation (M),Phospho (STY) _STIGVM(ox)VTAS(ph)HNPEEDNGVK_ STIGVM(1)VTASHNPEEDNGVK STIGVMVT(0.001)AS(0.999)HNPEEDNGVK STIGVM(188.07)VTASHNPEEDNGVK S(-107.36)T(-107.36)IGVMVT(-29.29)AS(29.29)HNPEEDNGVK 0 1 1 0 O95394 O95394 O95394 PGM3 Phosphoacetylglucosamine mutase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 880.766723632813 3 727.655836 2179.94568 33168.9100942755 1.8208 0.0013249 209950 152.77 209960 152.78 880.765351007373 56.958 1.2181 56.958 56.572 57.79 0 106 41 5 0.984014726797865 0.00413854213679207 0.0150921270133323 3.3987E-11 1 13304 188.07 165.63 4 52102000 15090 6170.4 14272 7548.2 8552.7 14769 9890.9 13067 6239.9 85852 14276 5836.8 14350 7782.2 9032.4 14622 9903.9 15760 6311.8 81142 1 1 1 1 1 1 1 1 1 1 5116 245 4510 4803 5681 5681 22 416 STIGVMVTASHNPEEDNGVK 20 Phospho (STY) _STIGVMVTAS(ph)HNPEEDNGVK_ STIGVMVT(0.003)AS(0.997)HNPEEDNGVK S(-103.69)T(-97.3)IGVMVT(-24.83)AS(24.83)HNPEEDNGVK 0 0 1 0 O95394 O95394 O95394 PGM3 Phosphoacetylglucosamine mutase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.434265136719 3 722.324198 2163.95076 33024.6926936581 1.621 0.0011709 211500 152.78 211510 152.78 875.43337730746 65.243 0.92918 65.243 64.938 65.867 0 119 31 6 0.995691346254098 0.00761781127499107 0.107197362631192 2.7974E-23 2 15296 273.96 246.87 4 113370000 42405 38383 43435 38582 37427 42134 38000 44244 41865 67996 40130 36260 43605 39660 38347 42229 38759 46347 41144 65050 2 2 2 2 2 2 2 2 2 2 5117 245 4510 4804 5682;5683 5682 416 STLYFNTQEK 10 Phospho (STY) _ST(ph)LYFNTQEK_ S(0.377)T(0.622)LYFNTQEK S(-2.17)T(2.17)LY(-47.46)FNT(-68.25)QEK 0 0 1 0 Q92521 Q92521 Q92521 PIGB GPI mannosyltransferase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.3037109375 3 437.526992 1309.55915 40983.6835773114 1.6943 0.00074128 349180 152.78 349180 152.78 590.302692928395 71.309 0.48967 71.309 71.06 71.549 1.4211E-14 49 16 4 0.981165378104682 0.00224083816324704 0.0448804176593292 1.1729E-06 1 16725 164.48 127.81 4 15724000 9333.6 7406.7 11425 7390.1 6619.4 10360 7932.2 9092.1 6977.6 12928 8839.9 6996.8 11327 7636.6 7018.8 10260 7985.1 9558.7 6925.3 12384 1 1 1 1 1 1 1 1 1 1 5118 1593 4511 4805 5684 5684 4709 STNGDTFLGGEDFDQALLR 19 Unmodified _STNGDTFLGGEDFDQALLR_ 0 0 0 0 P38646 P38646 P38646 HSPA9 Stress-70 protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.714904785156 3 685.992114 2054.95451 35574.5819122309 1.8267 0.0012531 111350 76.387 111350 76.388 762.713493422009 93.883 0.38056 93.883 93.702 94.082 0 33 12 3 0.952845466098569 0.00248235628561192 0.0734443975871964 1.3635E-07 1 21866 154.19 130 1 8785000 3084.1 3247.7 4333.1 4277.1 3661.6 3247.9 4487.7 4972.3 4061.7 18466 2923.1 3073.8 4284.8 4312.2 3766.7 3357.9 4516.7 5477.1 4025.8 17503 1 1 1 1 1 1 1 1 1 1 5119 564 4512 4806 5685 5685 STPFIVPSSPTEQEGR 16 Phospho (STY) _STPFIVPSS(ph)PTEQEGR_ STPFIVPS(0.003)S(0.986)PT(0.012)EQEGR S(-93.02)T(-93.02)PFIVPS(-25.53)S(19.3)PT(-19.3)EQEGR 0 0 1 0 Q12888 Q12888 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.999877929688 3 604.611896 1810.81386 37841.9152708884 1.4458 0.00087417 126340 76.388 126340 76.389 681.334114671921 71.418 0.92633 71.418 71.06 71.986 1.4211E-14 130 31 6 0.987750247350261 0.00262094179749491 0.0358207164248755 5.893E-05 1 16713 122.1 105.6 5 144380000 4671.9 5496.1 5302.1 5521 4546 5178.5 5136.5 5865.4 5472.4 6120.6 4423.2 5192.1 5294.6 5661.8 4666.6 5226.1 5209.3 6041.2 5385.4 5899 1 1 1 1 1 1 1 1 1 1 5120 911 4513 4807 5686 5686 1504 STPLASPSPSPGRSPQR 17 Phospho (STY) _STPLASPSPSPGRS(ph)PQR_ STPLASPSPSPGRS(1)PQR S(-190.98)T(-187.32)PLAS(-125.17)PS(-88.12)PS(-50.95)PGRS(50.95)PQR 0 0 1 1 Q8WYP5 Q8WYP5 Q8WYP5 AHCTF1 Protein ELYS MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.680297851563 3 601.291268 1800.85198 38115.8492852062 1.784 0.0010727 127040 76.388 127040 76.389 677.67894718726 38.866 0.50276 38.866 38.638 39.141 0 71 16 5 0.921988840806624 0.00758678997182065 0.0924523062488527 1.1186E-22 1 8795 256.58 221.41 6 120400000 19978 16670 20907 17453 17763 21755 15813 19492 16501 4782 18908 15752 20957 17942 18184 21595 16209 19784 16253 4953.9 1 1 1 1 1 1 1 1 1 1 5121 1585 4514 4808 5687 5687 2915 STQLLQAAAAEASLNK 16 Phospho (STY) _S(ph)TQLLQAAAAEASLNK_ S(0.5)T(0.5)QLLQAAAAEASLNK S(0)T(0)QLLQAAAAEAS(-142.13)LNK 0 0 1 0 Q2M2I8 Q2M2I8 Q2M2I8 AAK1 AP2-associated protein kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.058349609375 3 565.94862 1694.82403 37155.9282863298 1.7283 0.00097812 269940 152.77 269950 152.78 718.7233032831 91.096 0.71881 91.096 90.762 91.481 0 75 24 5 0.993216897826771 0.00424217600248211 0.0271196924077522 2.6046E-07 1 21218 160.05 134.33 3 49211000 25004 9539.1 29450 9876 7209.2 26368 7158.7 17152 10669 17800 23677 9013.2 29126 10385 8631.7 25612 7385.5 18098 10379 17158 1 1 1 1 1 1 1 1 1 1 5122 1122 4515 4809 5688 5688 1953;4589 STSAPQMSPGSSDNQSSSPQPAQQK 25 Oxidation (M),Phospho (STY) _STSAPQM(ox)S(ph)PGSSDNQSSSPQPAQQK_ STSAPQM(1)SPGSSDNQSSSPQPAQQK STSAPQMS(0.998)PGS(0.002)SDNQSSSPQPAQQK STSAPQM(172.05)SPGSSDNQSSSPQPAQQK S(-47.49)T(-47.49)S(-40.09)APQMS(27.27)PGS(-27.27)S(-48.02)DNQS(-85.5)S(-91.64)S(-97.69)PQPAQQK 0 1 1 0 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1029.81091308594 3 876.700832 2627.08067 31391.6731281707 1.2904 0.0011313 174260 152.78 174260 152.78 1029.81019529435 33.282 0.32979 33.282 33.054 33.384 0 41 11 5 0.92871380693153 0.000298276526867619 0.000742999052852793 1.5564E-08 1 7470 172.05 154.7 9 21220000 3716.4 3563.8 3724.3 3286.5 2722.2 3216.3 2373.4 4073.2 3746.7 939.83 3516.7 3365.1 3736.7 3390.3 2818 3239.5 2470.3 4080.8 3638.6 979.23 1 1 1 1 1 1 1 1 1 1 5123 993 4516 4810 5689 5689 131 1683;1684 STSAPQMSPGSSDNQSSSPQPAQQK 25 Phospho (STY) _STSAPQMS(ph)PGSSDNQSSSPQPAQQK_ STSAPQMS(0.98)PGS(0.018)S(0.001)DNQSSSPQPAQQK S(-35.87)T(-35.87)S(-35.87)APQMS(17.29)PGS(-17.29)S(-29.22)DNQS(-85.23)S(-95.45)S(-100.95)PQPAQQK 0 0 1 0 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.611755371094 4 653.778715 2611.08575 35119.2103185464 1.848 0.0012082 175260 114.58 175260 114.58 768.611155028803 41.147 0.82816 41.147 40.883 41.711 0 132 28 7 0.961496399076376 0.00335732948406506 0.0311724468757919 2.132E-09 1 9352 175.39 158.99 9 150360000 14540 11533 11348 11945 10196 12259 11080 13365 11188 3746 13747 10897 11598 12245 10428 12295 11239 13476 11034 3836.6 1 1 1 1 1 1 1 1 1 1 5124 993 4516 4811 5690 5690 1683;1684 STSAPQMSPGSSDNQSSSPQPAQQK 25 2 Phospho (STY) _STSAPQMS(ph)PGSSDNQSS(ph)SPQPAQQK_ STS(0.001)APQMS(0.919)PGS(0.064)S(0.016)DNQS(0.005)S(0.604)S(0.391)PQPAQQK S(-38.67)T(-38.2)S(-30.62)APQMS(11.6)PGS(-11.6)S(-17.63)DNQS(-20.52)S(1.9)S(-1.9)PQPAQQK 0 0 2 0 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.603393554688 4 673.770297 2691.05208 35480.3354308972 1.7892 0.0012055 170060 114.58 170060 114.58 788.602168108055 42.544 0.60166 42.544 42.223 42.825 0 58 20 4 0.910607970391421 0.000611689484635942 0.00448407573130472 8.3858E-05 1 9773 111.04 99.189 36 12213000 6996.1 6462.4 7459.2 7497.2 5930.6 7490.5 6562.4 7477.2 8074.9 6515.1 6621.9 6110.7 7466.8 7634.6 6119 7520.5 6691.1 7697 7903.4 6307.8 1 1 1 1 1 1 1 1 1 1 5125 993 4516 4812 5691 5691 1683;1684 STSATDTHHVEMAR 14 Oxidation (M),Phospho (STY) _S(ph)TSATDTHHVEM(ox)AR_ STSATDTHHVEM(1)AR S(0.96)T(0.04)SATDTHHVEMAR STSATDTHHVEM(234.82)AR S(13.85)T(-13.85)S(-35.49)AT(-70.19)DT(-127.09)HHVEMAR 0 1 1 0 O14874 O14874 O14874 BCKDK [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 623.279846191406 3 546.890776 1637.6505 39643.0657029554 1.7348 0.00094872 139680 76.388 139680 76.389 623.278738075604 23.122 0.31631 23.122 22.949 23.266 3.5527E-15 34 10 4 0.947909875051532 0.0081616187367473 0.126461260569074 4.6399E-16 1 5185 234.82 217.61 5 11529000 1821.4 2256.1 1578.9 1732.9 2650.8 2283.8 3274.5 2695.6 1554 1040.5 1722.6 2128.3 1618.1 1820.1 2634 2271.7 3256.1 2719.3 1606.3 1042.2 1 1 1 1 1 1 1 1 1 1 5126 68 4517 4813 5692 5692 8 114 STSATDTHHVEMAR 14 Phospho (STY) _S(ph)TSATDTHHVEMAR_ S(0.987)T(0.012)SATDTHHVEMAR S(19.06)T(-19.06)S(-35.12)AT(-79.84)DT(-124.21)HHVEMAR 0 0 1 0 O14874 O14874 O14874 BCKDK [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.947204589844 3 541.559138 1621.65558 39842.9881445507 1.7522 0.00094889 141050 76.387 141050 76.388 617.946498795437 27.909 0.34111 27.909 27.751 28.092 0 45 11 5 0.946244362441847 0.00736968447391685 0.146540597871924 1.215E-31 1 6200 305.9 284.29 5 55313000 8545.1 7704.3 10034 7399.2 8691.2 10644 14331 11415 7685.7 2673.7 8091.4 7276.2 10012 7668 8972.6 10539 14135 11500 7865.3 2781.8 1 1 1 1 1 1 1 1 1 1 5127 68 4517 4814 5693 5693 114 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 2 Oxidation (M),Phospho (STY) _STSFRGGM(ox)GS(ph)GGLATGIAGGLAGM(ox)GGIQNEK_ STSFRGGM(1)GSGGLATGIAGGLAGM(1)GGIQNEK S(0.183)T(0.183)S(0.151)FRGGMGS(0.484)GGLATGIAGGLAGMGGIQNEK STSFRGGM(193.77)GSGGLATGIAGGLAGM(193.77)GGIQNEK S(-4.24)T(-4.24)S(-5.07)FRGGMGS(4.24)GGLAT(-42.53)GIAGGLAGMGGIQNEK 0 2 1 1 P05783 P05783 P05783 KRT18 Keratin, type I cytoskeletal 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.674743652344 4 738.590131 2950.33142 33816.8167414142 1.7189 0.0012696 155140 114.58 155140 114.58 853.423350909159 75.466 0.57166 75.466 75.232 75.803 0 80 19 6 0.954386368312153 0.00661243364386222 0.186124520352478 5.9706E-12 1 17698 193.77 152.56 5 35316000 4127.4 15255 4139.6 14569 4733.2 4415.9 5443.6 10059 17369 12159 3905.6 14407 4176.3 14838 4789.5 4973.1 5833.6 10237 16632 11682 1 1 1 1 1 1 1 1 1 1 5128 307 4518 4815 5694 5694 28;29 503;504;505;4365;4366 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 Oxidation (M),Phospho (STY) _STSFRGGMGS(ph)GGLATGIAGGLAGM(ox)GGIQNEK_ STSFRGGMGSGGLATGIAGGLAGM(1)GGIQNEK S(0.247)T(0.247)S(0.203)FRGGMGS(0.301)GGLAT(0.001)GIAGGLAGMGGIQNEK STSFRGGM(-122.44)GSGGLATGIAGGLAGM(122.44)GGIQNEK S(-0.86)T(-0.86)S(-1.71)FRGGMGS(0.86)GGLAT(-24.38)GIAGGLAGMGGIQNEK 0 1 1 1 P05783 P05783 P05783 KRT18 Keratin, type I cytoskeletal 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.674255371094 4 734.591403 2934.33651 33332.1339777224 1.9463 0.0014297 155980 114.58 155980 114.58 849.423225934718 82.222 0.71364 82.222 81.913 82.626 0 77 24 5 0.958203467023058 0.00302110119562791 0.112510268765216 8.6346E-09 1 19210 174.28 154.53 10 29527000 3081.7 9614.8 3323.4 10877 3560.9 3262.9 3226.2 6089.2 11369 19522 2917 9089.9 3334.8 10969 3602.5 3682.6 3523 6586.6 10872 18523 1 1 1 1 1 1 1 1 1 1 5129 307 4518 4816 5695 5695 28;29 503;504;505;4365;4366 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 Oxidation (M),Phospho (STY) _S(ph)TSFRGGM(ox)GSGGLATGIAGGLAGMGGIQNEK_ STSFRGGM(1)GSGGLATGIAGGLAGMGGIQNEK S(0.309)T(0.309)S(0.309)FRGGMGS(0.072)GGLATGIAGGLAGMGGIQNEK STSFRGGM(197.13)GSGGLATGIAGGLAGM(-197.13)GGIQNEK S(0)T(0)S(0)FRGGMGS(-6.32)GGLAT(-52.39)GIAGGLAGMGGIQNEK 0 1 1 1 P05783 P05783 P05783 KRT18 Keratin, type I cytoskeletal 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.424865722656 4 734.591403 2934.33651 33679.3474230185 1.7249 0.0012671 155980 114.58 155980 114.58 849.42354334326 87.237 0.76675 87.237 86.968 87.734 0 109 25 6 0.984584988261102 0.00946486750578 0.0748997896786929 1.1762E-18 3 20346 247.02 217.22 10 54932000 12403 51428 13531 52579 12454 15204 14525 29374 59608 62238 11740 48589 13551 53316 12773 17203 15920 30790 56904 59284 3 3 3 3 3 3 3 3 3 3 5130 307 4518 4816 5696;5697;5698 5698 28;29 503;504;505;4365;4366 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 Oxidation (M),Phospho (STY) _STSFRGGM(ox)GSGGLAT(ph)GIAGGLAGMGGIQNEK_ STSFRGGM(1)GSGGLATGIAGGLAGMGGIQNEK S(0.193)T(0.193)S(0.195)FRGGMGS(0.18)GGLAT(0.238)GIAGGLAGMGGIQNEK STSFRGGM(32.88)GSGGLATGIAGGLAGM(-32.88)GGIQNEK S(-0.92)T(-0.92)S(-0.87)FRGGMGS(-1.22)GGLAT(0.87)GIAGGLAGMGGIQNEK 0 1 1 1 P05783 P05783 P05783 KRT18 Keratin, type I cytoskeletal 18 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1131.89562988281 3 979.119445 2934.33651 NaN NaN NaN NaN NaN NaN NaN NaN 93.611 1 93.611 93.111 94.111 0 NaN NaN NaN 0.040523 1 21793 66.201 50.802 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5131 307 4518 4816 5699 5699 28;29 503;504;505;4365;4366 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 Phospho (STY) _S(ph)TSFRGGMGSGGLATGIAGGLAGMGGIQNEK_ S(0.316)T(0.316)S(0.316)FRGGMGS(0.052)GGLATGIAGGLAGMGGIQNEK S(0)T(0)S(0)FRGGMGS(-7.83)GGLAT(-48.38)GIAGGLAGMGGIQNEK 0 0 1 1 P05783 P05783 P05783 KRT18 Keratin, type I cytoskeletal 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.425415039063 4 730.592674 2918.34159 33066.3476619476 1.8353 0.0013409 156830 114.58 156830 114.58 845.424266452689 93.394 0.84639 93.394 93.06 93.906 -1.4211E-14 117 28 6 0.921828086916005 0.00995513277659658 0.210884548785508 1.3617E-34 1 21711 294.98 270.52 5 112820000 4447 26270 4409.7 28672 4183.7 3782.5 5387 14045 31784 34401 4207.9 24830 4442 28893 4300.9 5095.7 6148.6 14727 30242 32718 1 1 1 1 1 1 1 1 1 1 5132 307 4518 4817 5700 5700 503;504;505;4365;4366 STSFRQGPEESGLGDGTGPK 20 Phospho (STY) _STS(ph)FRQGPEESGLGDGTGPK_ S(0.018)T(0.06)S(0.922)FRQGPEESGLGDGTGPK S(-17.2)T(-11.86)S(11.86)FRQGPEES(-57.59)GLGDGT(-111.03)GPK 0 0 1 1 Q92614 Q92614 Q92614 MYO18A Unconventional myosin-XVIIIa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.420043945313 3 696.307424 2085.90044 33191.8793238749 2.0465 0.001425 219410 152.78 219410 152.78 849.417956606146 53.989 0.34498 53.989 53.744 54.089 0 26 11 3 0.984565158405251 0.00165918992137968 0.0215152189354387 1.2642E-07 1 12600 146.67 128.35 5 17077000 21641 12140 21700 11647 13932 22789 14463 16650 13094 20295 20478 11465 21753 12168 14603 22306 14659 17550 12978 19495 1 1 1 1 1 1 1 1 1 1 5133 1608 4519 4818 5701 5701 2962 STSLKER 7 Phospho (STY) _ST(ph)SLKER_ S(0.118)T(0.441)S(0.441)LKER S(-5.73)T(0)S(0)LKER 0 0 1 1 Q86VP3 Q86VP3 Q86VP3 PACS2 Phosphofurin acidic cluster sorting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 453.586730957031 3 300.811064 899.411362 46918.9124737813 0.74684 0.00022466 507880 152.77 507880 152.77 453.586322631363 32.859 0.52333 32.859 32.617 33.14 0 44 17 4 0.919018476395572 0.00241670166646038 0.0473288291712359 0.026097 1 7360 76.282 27.222 3 12045000 22747 11182 26063 11310 17757 24985 16862 17724 11722 1816 21537 10564 25950 11825 18493 24345 17066 18114 11784 2120.2 1 1 1 1 1 1 1 1 1 1 5134 1381 4520 4819 5702 5702 2503;4646 STSLSALVR 9 Phospho (STY) _STS(ph)LSALVR_ S(0.03)T(0.055)S(0.915)LSALVR S(-14.85)T(-12.21)S(12.21)LS(-35.18)ALVR 0 0 1 0 Q5VZ89 Q5VZ89 Q5VZ89 DENND4C DENN domain-containing protein 4C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 621.837219238281 2 507.254989 1012.49543 40142.6211438017 1.538 0.00078016 225890 114.58 225890 114.58 621.836613369015 71.012 0.46006 71.012 70.825 71.285 0 38 15 3 0.86458990976932 0.00178072719262042 0.0177371073837486 5.5725E-06 1 16655 152.7 105.5 4 31518000 26894 6892.8 24338 7769 15298 23799 18141 15640 6542.6 5342.9 25439 6516.4 24549 8181.1 16088 23047 18012 16165 6947.6 5393 1 1 1 1 1 1 1 1 1 1 5135 1214 4521 4820 5703 5703 2137 STSPAGQHHSPISSR 15 2 Phospho (STY) _ST(ph)SPAGQHHS(ph)PISSR_ S(0.306)T(0.347)S(0.347)PAGQHHS(0.804)PIS(0.103)S(0.092)R S(-0.55)T(0)S(0)PAGQHHS(8.93)PIS(-8.93)S(-9.42)R 0 0 2 0 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.956359863281 3 570.232852 1707.67673 39263.1502841064 1.6373 0.00093365 133960 76.388 133960 76.389 646.955322238149 24.832 0.32078 24.832 24.713 25.034 3.5527E-15 26 10 4 0.94080543143062 0.00140981092955718 0.0109988936650983 0.03221 1 5560 63.165 53.253 15 4866200 2490.4 2651.9 2042.9 2955 2746 2451.7 3032.9 2746.4 2359.4 2605.1 2354.9 2506.8 2091.9 3007.6 2748.5 2488.5 3055 2821.9 2356.6 2516.6 1 1 1 1 1 1 1 1 1 1 5136 1183 4522 4821 5704 5704 2069;2070;4601 STSPASEK 8 Phospho (STY) _STS(ph)PASEK_ STS(1)PASEK S(-37.08)T(-40.53)S(37.08)PAS(-60.29)EK 0 0 1 0 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.845397949219 2 443.681323 885.348093 37467.7160824251 2.5719 0.0011411 516500 229.16 516510 229.16 672.844272668465 31.397 0.67292 31.397 30.973 31.645 -3.5527E-15 66 22 5 0.986799310430427 0.00929915086814145 0.217472376706164 2.6207E-08 1 7006 176.41 85.487 4 83559000 49350 73370 49033 70319 68771 47848 71861 68594 78099 3146.9 46697 69293 49639 72027 68674 49229 73170 68095 76795 4550.7 1 1 1 1 1 1 1 1 1 1 5137 2190 4523 4822 5705 5705 3968 STSPIIGSPPVR 12 Phospho (STY) _STS(ph)PIIGSPPVR_ S(0.002)TS(0.998)PIIGSPPVR S(-27.94)T(-39.55)S(27.94)PIIGS(-85.84)PPVR 0 0 1 0 Q86TB9 Q86TB9 Q86TB9 PATL1 Protein PAT1 homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.409301757813 2 645.82631 1289.63807 35629.3933054969 1.5386 0.00099368 177420 114.58 177420 114.58 760.408203693411 59.671 0.60014 59.671 59.307 59.907 7.1054E-15 62 20 4 0.990666769643665 0.00259464760018079 0.144135536342084 2.8424E-16 1 13949 238.07 162.95 4 78546000 26930 27481 27960 27686 22318 29187 21180 25327 29412 15571 25487 25961 28023 28439 22973 29170 21840 26023 28671 15248 1 1 1 1 1 1 1 1 1 1 5138 1361 4524 4823 5706 5706 2471;4643 STSPPPSPEVWADSR 15 Phospho (STY) _STS(ph)PPPSPEVWADSR_ S(0.001)T(0.009)S(0.989)PPPS(0.001)PEVWADSR S(-30.12)T(-20.3)S(20.3)PPPS(-29.84)PEVWADS(-139.9)R 0 0 1 0 Q08495 Q08495 Q08495 DMTN Dematin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 961.450439453125 2 846.866892 1691.71923 31821.8238985621 1.6773 0.0014204 135300 114.58 135300 114.58 961.448233749112 64.884 0.83857 64.884 64.446 65.284 0 88 28 4 0.954025533119833 0.000946687673294134 0.0294325700653866 1.6184E-10 1 15189 194.77 148.18 5 15410000 5084.5 10692 5251.6 9447.1 10539 5608.3 11476 8655.8 9245 17218 4811.9 10093 5345 9714.2 10394 5863.4 11576 9083.1 9216.7 16413 1 1 1 1 1 1 1 1 1 1 5139 889 4525 4824 5707 5707 1451 STSPSAAGGQQK 12 Phospho (STY) _STS(ph)PSAAGGQQK_ S(0.057)T(0.178)S(0.764)PS(0.001)AAGGQQK S(-11.26)T(-6.33)S(6.33)PS(-27.39)AAGGQQK 0 0 1 0 Q2TB10 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.923767089844 2 599.758624 1197.5027 33771.4516299757 2.6441 0.0015858 382090 229.16 382090 229.16 828.920952595191 29.939 0.23881 29.939 29.806 30.045 0 14 7 2 0.947884476411954 0.000795139021949664 0.0331354472333044 6.5791E-07 1 6678 139.48 110.15 4 8213000 15350 14443 15947 15617 8113.6 14832 8960 12446 16207 2884.2 14527 13650 15929 15951 8715 14877 9278.3 12663 15684 3003.8 1 1 1 1 1 1 1 1 1 1 5140 1123 4526 4825 5708 5708 1956 STSPTFNK 8 Phospho (STY) _STS(ph)PTFNK_ S(0.001)T(0.024)S(0.975)PTFNK S(-30.67)T(-16.1)S(16.1)PT(-56.68)FNK 0 0 1 0 Q9BX63 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.370422363281 2 481.204965 960.395377 36270.8234386797 1.3344 0.00064212 476230 229.16 476230 229.16 710.368776793323 48.517 0.58639 48.517 48.123 48.709 0 57 19 4 0.988067882913532 0.002197751236398 0.0530228683406693 2.3282E-05 1 11201 150.35 100.24 4 68929000 44505 30094 44166 28085 36871 39893 37797 40662 28796 7454.9 42112 28417 44405 29150 37852 39483 38183 40982 28795 7960.7 1 1 1 1 1 1 1 1 1 1 5141 1857 4527 4826 5709 5709 3391 STSPVTDPSIPIR 13 Phospho (STY) _STS(ph)PVTDPSIPIR_ S(0.098)T(0.253)S(0.649)PVTDPSIPIR S(-8.2)T(-4.1)S(4.1)PVT(-34.22)DPS(-62.69)IPIR 0 0 1 0 Q99607 Q99607 Q99607 ELF4 ETS-related transcription factor Elf-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.93994140625 2 725.352889 1448.69122 33832.132716155 1.8939 0.0013737 157970 114.58 157970 114.58 839.93593581429 64.977 0.89362 64.977 64.738 65.631 0 53 16 4 0.903538577510764 0.0023936884720387 0.0437077705936942 2.3857E-10 1 15246 176.51 146.25 5 62011000 21586 28744 21196 23463 40615 22956 39454 27883 24395 15763 20425 27124 21601 24405 40039 23124 39804 28252 24709 15488 1 1 1 1 1 1 1 1 1 1 5142 1777 4528 4827 5710 5710 3279 STSPVTDPSIPIRK 14 Phospho (STY) _STS(ph)PVTDPSIPIRK_ S(0.045)T(0.273)S(0.681)PVTDPSIPIRK S(-11.78)T(-3.97)S(3.97)PVT(-34.93)DPS(-68.16)IPIRK 0 0 1 1 Q99607 Q99607 Q99607 ELF4 ETS-related transcription factor Elf-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.380493164063 3 526.602672 1576.78619 38972.2039634736 1.2244 0.00064475 290120 152.78 290120 152.78 679.3784867599 62.412 0.60825 62.412 62.036 62.644 -7.1054E-15 49 20 4 0.886529991870532 0.00311330035412017 0.0799040911769974 0.00017096 1 14654 109.36 78.923 5 21440000 11604 11875 12358 12043 17244 11560 16656 14265 13468 5139.8 10983 11219 12460 12347 17200 11653 16895 14359 13424 5169.9 1 1 1 1 1 1 1 1 1 1 5143 1777 4529 4828 5711 5711 3279 STSQELAK 8 Phospho (STY) _STS(ph)QELAK_ ST(0.001)S(0.998)QELAK S(-36.9)T(-28.43)S(28.43)QELAK 0 0 1 0 Q5BKX6 Q5BKX6 Q5BKX6 SLC45A4 Solute carrier family 45 member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.376037597656 2 472.210247 942.405942 37886.8011885135 1.8924 0.0008936 485300 229.16 485300 229.16 701.373775331955 44.402 0.48012 44.402 44.172 44.652 0 28 16 2 0.98389496214031 0.000717004738562808 0.0145162716364562 1.984E-05 1 10192 154.15 113.82 3 18279000 32609 31245 33732 31831 23824 32970 22718 29983 34333 6891.7 30861 29520 33779 32666 24757 32972 23497 30399 33383 7183.3 1 1 1 1 1 1 1 1 1 1 5144 1159 4530 4829 5712 5712 2008 STSSTSSGSNSNALVPVSWK 20 Phospho (STY) _STS(ph)STSSGSNSNALVPVSWK_ S(0.112)T(0.112)S(0.622)S(0.112)T(0.021)S(0.021)SGSNSNALVPVSWK S(-7.44)T(-7.44)S(7.44)S(-7.44)T(-14.82)S(-14.82)S(-38.29)GS(-98.98)NS(-150.63)NALVPVS(-236.32)WK 0 0 1 0 O94915 O94915 O94915 FRYL Protein furry homolog-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.42626953125 3 692.647558 2074.92084 33997.8847902835 1.793 0.0012419 220570 152.77 220570 152.78 845.756776518407 83.415 0.96017 83.415 82.71 83.67 0 68 32 4 0.986765003879215 0.00385606799715855 0.0554062933623305 7.0535E-23 1 19488 252.55 227.23 10 21692000 6866.6 7481.6 7174.3 6877.5 12434 6818.4 13237 9424.5 7563.8 19993 6498.7 7064.2 7272.3 7097.5 12313 6907.4 13280 9954.9 7703.8 19044 1 1 1 1 1 1 1 1 1 1 5145 228 4531 4830 5713 5713 395 STSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR 36 Oxidation (M),Phospho (STY) _STST(ph)PNVHMVSTTAPM(ox)DSNLIQLTGQSFSTDAAGSR_ STSTPNVHMVSTTAPM(1)DSNLIQLTGQSFSTDAAGSR S(0.24)T(0.24)S(0.24)T(0.28)PNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR STSTPNVHM(-63.47)VSTTAPM(63.47)DSNLIQLTGQSFSTDAAGSR S(-0.68)T(-0.68)S(-0.68)T(0.68)PNVHMVS(-43.1)T(-55.07)T(-53.97)APMDS(-90.54)NLIQLT(-146.15)GQS(-153.56)FS(-156.99)T(-158.2)DAAGS(-158.72)R 0 1 1 0 P10398 P10398 P10398 ARAF Serine/threonine-protein kinase A-Raf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1009.97705078125 4 952.181576 3804.6972 30851.7475983458 1.0808 0.0010292 60170 57.292 60171 57.293 1009.97607560652 85.637 0.51278 85.637 85.301 85.814 0 51 17 4 0.964967850178892 0.00241811470379939 0.0266026372625138 1.3689E-08 1 19996 160.03 141.31 26 17205000 2121.3 1646.3 1928.4 1709 1512.9 2048.4 2298.3 2590.1 2095.8 17701 2006.6 1555.6 1949.2 1756.4 1570.8 2078.2 2296.2 3110.5 2076.5 16727 1 1 1 1 1 1 1 1 1 1 5146 352 4532 4831 5714 5714 41;42 572;573;4384;4385 STSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR 36 Oxidation (M),Phospho (STY) _S(ph)TSTPNVHM(ox)VSTTAPMDSNLIQLTGQSFSTDAAGSR_ STSTPNVHM(1)VSTTAPMDSNLIQLTGQSFSTDAAGSR S(0.301)T(0.301)S(0.301)T(0.097)PNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR STSTPNVHM(52.19)VSTTAPM(-52.19)DSNLIQLTGQSFSTDAAGSR S(0)T(0)S(0)T(-4.94)PNVHMVS(-31.87)T(-39.52)T(-39.52)APMDS(-77.11)NLIQLT(-120.99)GQS(-137.11)FS(-142.66)T(-142.66)DAAGS(-144.45)R 0 1 1 0 P10398 P10398 P10398 ARAF Serine/threonine-protein kinase A-Raf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1009.97344970703 4 952.181576 3804.6972 30221.5724683277 0.82818 0.00078858 60171 57.294 60172 57.295 1009.97787502832 88.24 0.4846 88.24 87.967 88.452 1.4211E-14 25 16 2 0.272124089410823 0.000461198454685003 0.0295228099106289 2.1731E-08 1 20605 144.6 130.14 26 14647000 1456.5 2308.3 1757.5 2430.5 2091.3 2088.5 2852.2 3055 2470.2 34764 1379.4 2181.3 1757.9 2482.6 2112.9 2186.2 2856.3 4074.4 2453.6 32805 1 1 1 1 1 1 1 1 1 1 5147 352 4532 4831 5715 5715 41;42 572;573;4384;4385 STSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR 36 Phospho (STY) _S(ph)TSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR_ S(0.331)T(0.331)S(0.256)T(0.082)PNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR S(0)T(0)S(-1.11)T(-6.04)PNVHMVS(-54.66)T(-51.86)T(-50.43)APMDS(-126.66)NLIQLT(-220.49)GQS(-231.83)FS(-237.84)T(-240.28)DAAGS(-245.66)R 0 0 1 0 P10398 P10398 P10398 ARAF Serine/threonine-protein kinase A-Raf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1005.97723388672 4 948.182847 3788.70228 30984.947885468 1.4912 0.001414 60421 57.29 60422 57.291 1005.97443928974 93.397 0.49422 93.397 93.179 93.673 1.4211E-14 75 16 6 0.982041176535658 0.00565305038591445 0.133050684351149 4.2955E-19 1 21728 246.05 233.56 13 44017000 1316.2 2016.2 2608.3 2535.4 1720.1 2202.3 2147.7 2704.3 2075 20682 1250.3 1907.6 2542 2566.2 1803.9 2267.6 2163.7 3316.3 2050.5 19537 1 1 1 1 1 1 1 1 1 1 5148 352 4532 4832 5716 5716 572;573;4384;4385 STSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR 36 Phospho (STY) _STS(ph)TPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR_ S(0.138)T(0.138)S(0.69)T(0.035)PNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR S(-7)T(-7)S(7)T(-12.96)PNVHMVS(-60.43)T(-74.63)T(-81.64)APMDS(-145.48)NLIQLT(-230.03)GQS(-244.12)FS(-252.42)T(-252.01)DAAGS(-266.11)R 0 0 1 0 P10398 P10398 P10398 ARAF Serine/threonine-protein kinase A-Raf MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1340.63061523438 3 1263.90804 3788.70228 27818.3018007979 1.6016 0.0020242 60436 76.385 60438 76.387 1340.96260956953 93.425 0.35159 93.425 93.21 93.562 -1.4211E-14 40 11 5 0.930900899180628 0.00148052853285905 0.0332827426999433 6.2005E-26 2 21769 273.73 259.88 13 13699000 1748.9 3144.5 1410.6 3108.8 2612 2945.7 4713.8 4245.1 3291.8 54306 1653.7 2970.3 1458.5 3191.6 2608.1 3078.5 4658.4 5844.2 3308.3 51234 2 2 2 2 2 2 2 2 2 2 5149 352 4532 4832 5717;5718 5718 572;573;4384;4385 STSTPNVHMVSTTLPVDSR 19 Oxidation (M),Phospho (STY) _STS(ph)TPNVHM(ox)VSTTLPVDSR_ STSTPNVHM(1)VSTTLPVDSR S(0.14)T(0.14)S(0.581)T(0.14)PNVHMVSTTLPVDSR STSTPNVHM(119.87)VSTTLPVDSR S(-6.19)T(-6.19)S(6.19)T(-6.19)PNVHMVS(-76.8)T(-83.55)T(-86.62)LPVDS(-104.71)R 0 1 1 0 P04049 P04049 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.716857910156 3 708.992559 2123.95585 35425.7350830564 1.1884 0.00084255 107740 76.388 107740 76.389 785.714891127966 55.302 0.87473 55.302 54.868 55.743 0 79 29 4 0.852315778337126 0.00141241357187477 0.00826035698457635 3.671E-05 1 12897 119.87 96.968 8 15947000 18784 14231 20866 13740 15210 21012 14886 19763 16905 54472 17782 13441 20821 14254 15766 20824 15223 21513 16595 51750 1 1 1 1 1 1 1 1 1 1 5150 288 4533 4833 5719 5719 25 480 STSTPNVHMVSTTLPVDSR 19 Phospho (STY) _STS(ph)TPNVHMVSTTLPVDSR_ S(0.109)T(0.144)S(0.709)T(0.039)PNVHMVSTTLPVDSR S(-8.15)T(-6.93)S(6.93)T(-12.6)PNVHMVS(-95.52)T(-104.56)T(-107.73)LPVDS(-142.66)R 0 0 1 0 P04049 P04049 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.052124023438 3 703.660921 2107.96093 34648.060211681 1.5782 0.0011105 108560 76.388 108560 76.389 780.383418618795 64.997 0.74333 64.997 64.684 65.427 0 86 25 4 0.92879572102885 0.00571011810959634 0.0485302625932928 2.3775E-08 1 15239 171.75 139.94 8 105770000 12953 16289 13286 17867 13263 16393 16388 18913 17149 11867 12258 15396 13365 18225 13506 16551 16552 19231 16889 11612 1 1 1 1 1 1 1 1 1 1 5151 288 4533 4834 5720 5720 480 STSTPTSPGPR 11 Phospho (STY) _STSTPTS(ph)PGPR_ STS(0.021)T(0.437)PT(0.003)S(0.539)PGPR S(-43.66)T(-39.83)S(-14.16)T(-0.91)PT(-22.07)S(0.91)PGPR 0 0 1 0 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 698.838500976563 2 584.255717 1166.49688 38440.3652581009 1.6973 0.00099166 196120 114.58 196120 114.58 698.837242559429 27.54 0.40026 27.54 27.35 27.751 0 29 13 3 0.815969771579503 0.00189828827432482 0.0363956450259604 1.2734E-06 1 6142 142.29 126.77 6 13863000 9065.9 16203 8019.7 14484 5530.8 8038.7 6454.1 9640.9 16006 2614.1 8574.7 15296 8106.8 14873 5781.7 8370.2 6786.9 9687.2 15388 2684.6 1 1 1 1 1 1 1 1 1 1 5152 1576 4534 4835 5721 5721 2899 STSTSSMKK 9 Phospho (STY) _STSTSS(ph)MKK_ STST(0.001)S(0.029)S(0.97)MKK S(-59.77)T(-45.88)S(-36.4)T(-29.13)S(-15.31)S(15.31)MKK 0 0 1 1 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 575.313903808594 3 346.150869 1035.43078 41433.196902855 2.1016 0.00072746 662030 229.16 662030 229.16 575.313584888942 36.128 0.54792 36.128 35.88 36.428 0 69 18 5 0.968660306856436 0.0105639611291967 0.106012891618062 0.00035489 1 8119 110.93 66.583 6 124970000 42850 68310 42263 66183 39049 42127 44693 52697 73880 1994.8 40545 64518 42561 67698 39924 43436 46022 52510 71660 3097.9 1 1 1 1 1 1 1 1 1 1 5153 491 4535 4836 5722 5722 812 STSYGYSR 8 Phospho (STY) _STSYGYS(ph)R_ STSYGYS(1)R S(-87.65)T(-83.84)S(-70.36)Y(-83.76)GY(-60.28)S(60.28)R 0 0 1 0 Q13242 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.274658203125 2 500.692222 999.369891 39539.3999361225 1.5496 0.00077587 228850 114.58 228850 114.58 615.273886677874 33.739 0.55507 33.739 33.437 33.992 7.1054E-15 66 18 5 0.740936904952681 0.0082331068120148 0.219220538709239 0.0027296 1 7535 99.257 84.583 6 122550000 46884 50507 48909 39506 45145 55285 57392 50439 46513 3356.5 44372 47649 49109 41488 46198 54656 57534 50883 46355 4327.9 1 1 1 1 1 1 1 1 1 1 5154 938 4536 4837 5723 5723 1548;1549 STSYGYSR 8 2 Phospho (STY) _STS(ph)YGYS(ph)R_ S(0.052)T(0.074)S(0.873)Y(0.001)GYS(1)R S(-12.25)T(-10.7)S(10.7)Y(-30)GY(-39.09)S(39.09)R 0 0 2 0 Q13242 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.257629394531 2 540.675387 1079.33622 NaN NaN NaN NaN NaN NaN NaN NaN 35.97 1 35.97 35.47 36.47 0 NaN NaN NaN 0.03339 1 8099 62.894 54.45 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5155 938 4536 4838 5724 5724 1548;1549 STSYQELSEELVQVVENSELADEQDKETVR 30 Phospho (STY) _S(ph)TSYQELSEELVQVVENSELADEQDKETVR_ S(0.356)T(0.356)S(0.286)Y(0.001)QELSEELVQVVENSELADEQDKETVR S(0)T(0)S(-0.95)Y(-25.21)QELS(-66.6)EELVQVVENS(-232.7)ELADEQDKET(-256.29)VR 0 0 1 1 Q9H813 Q9H813 Q9H813 TMEM206 Transmembrane protein 206 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 999.4912109375 4 884.405633 3533.59343 32678.8111489295 1.2645 0.0011183 129560 114.58 129560 114.58 999.73924637016 101.15 0.11584 101.15 101.07 101.19 0 14 3 5 0.917150180759432 0.00666494874380718 0.199445344681237 2.1189E-25 1 23738 261.81 232.54 7 46571000 5511.4 4248 6302.6 5269.2 6021.5 6457.7 7248.6 7216.8 6008.3 54747 5218.1 4018.7 6299.7 5367 6143.4 6532.5 7285.6 8859.2 5981 51718 1 1 1 1 1 1 1 1 1 1 5156 1955 4537 4839 5725 5725 3561;4768 STTPAPK 7 Phospho (STY) _S(ph)TTPAPK_ S(0.924)T(0.061)T(0.015)PAPK S(11.83)T(-11.83)T(-17.81)PAPK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.341491699219 2 391.178219 780.341885 40095.8543512885 0.92038 0.00036003 585830 229.16 585830 229.16 620.341325530479 34.66 0.48831 34.66 34.398 34.887 0 35 14 3 0.993327266347543 0.00283557604906784 0.0229953560400763 0.0043128 1 7759 98.033 46.179 3 89465000 35615 46195 36518 46475 41257 32960 42249 42976 49067 4432.7 33704 43640 36780 47485 41608 33774 43144 42854 48125 5168.6 1 1 1 1 1 1 1 1 1 1 5157 2226 4538 4840 5726 5726 4113 STTPPPAEPVSLPQEPPK 18 Phospho (STY) _S(ph)TTPPPAEPVSLPQEPPK_ S(0.37)T(0.37)T(0.259)PPPAEPVSLPQEPPK S(0)T(0)T(-1.55)PPPAEPVS(-90.51)LPQEPPK 0 0 1 0 Q9UN86 Q9UN86 Q9UN86 G3BP2 Ras GTPase-activating protein-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 804.428771972656 3 651.318601 1950.93397 35035.4285707444 2.3184 0.00151 234560 152.77 234560 152.78 804.427294427974 68.489 1.3446 68.489 67.975 69.32 0 164 45 5 0.917774948208748 0.00796274209489433 0.102549766983174 1.4549E-07 2 16048 154.72 135.04 4 48888000 28325 34688 28201 31498 35393 28027 33983 33314 36655 48396 26802 32750 28489 32480 35475 28405 34733 34670 36054 46342 2 2 2 2 2 2 2 2 2 2 5158 2202 4539 4841 5727;5728 5727 3989;4814 STTPTSSPFR 10 Phospho (STY) _STT(ph)PTSSPFR_ S(0.001)T(0.008)T(0.938)PT(0.049)S(0.004)SPFR S(-32.08)T(-20.52)T(12.81)PT(-12.81)S(-23.79)S(-36.36)PFR 0 0 1 0 Q9Y520 Q9Y520 Q9Y520 PRRC2C Protein PRRC2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.337280273438 2 580.752811 1159.49107 37958.9621148514 0.84975 0.0004935 197300 114.58 197300 114.58 695.334590842361 47.551 0.40726 47.551 47.395 47.803 0 31 14 3 0.781534868053617 0.000941481571197895 0.00690341118769967 0.0022919 1 10998 98.634 60.458 6 39507000 28381 25871 29184 24873 24914 29183 26640 26789 28438 7037.6 26859 24434 29291 25669 25561 29042 27083 27176 27983 7246.7 1 1 1 1 1 1 1 1 1 1 5159 2289 4540 4842 5729 5729 4852 STVLTPMFVETQASQGTLQTR 21 Phospho (STY) _STVLTPMFVETQAS(ph)QGTLQTR_ STVLTPMFVETQAS(0.995)QGT(0.004)LQTR S(-161.01)T(-161.01)VLT(-148.73)PMFVET(-72.01)QAS(23.54)QGT(-23.54)LQT(-39.59)R 0 0 1 0 P78527 P78527 P78527 PRKDC DNA-dependent protein kinase catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.105529785156 3 792.381935 2374.12398 33496.3855303584 1.8523 0.0014677 96403 76.388 96405 76.389 869.103935736757 92.26 0.54291 92.26 91.969 92.512 0 73 18 5 0.892274070748227 0.00517693522046113 0.0881788414399977 7.8259E-12 1 21499 203.33 185.74 7 30332000 4124.8 3460.4 4016.3 3724.3 5064.9 4235.8 3369.8 4907.6 4442.5 18004 3902.8 3270.4 4060.1 3816.1 5055 4265.3 3541 5439.1 4337.9 17066 1 1 1 1 1 1 1 1 1 1 5160 803 4541 4843 5730 5730 1283 STVSETFMSKPSIAK 15 Phospho (STY) _STVS(ph)ETFMSKPSIAK_ S(0.004)T(0.019)VS(0.973)ET(0.004)FMSKPSIAK S(-24.24)T(-17.09)VS(17.09)ET(-23.53)FMS(-50.03)KPS(-70.51)IAK 0 0 1 1 P0DMP2;P0DJJ0;O75044 P0DMP2 P0DMP2 SRGAP2B;SRGAP2C;SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2B;SLIT-ROBO Rho GTPase-activating protein 2C;SLIT-ROBO Rho GTPase-activating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.432495117188 3 564.935323 1691.78414 35682.3410378431 2.4753 0.0013984 405640 229.16 405650 229.16 794.432647392703 77.5 0.37983 77.5 77.281 77.661 0 34 12 4 0.930312194169314 0.00336735638297876 0.0816491152694763 0.00016083 1 18169 102.33 85.045 6 13442000 22042 8833.6 20871 9096.7 15626 22526 15822 14735 9291.1 14847 20853 8346.3 21019 9539.9 16164 21910 15917 15530 9444.5 14321 1 1 1 1 1 1 1 1 1 1 5161 164 4542 4844 5731 5731 285 STVTGERQSGDGQESTEPVENK 22 Phospho (STY) _STVTGERQS(ph)GDGQESTEPVENK_ STVTGERQS(1)GDGQESTEPVENK S(-71.93)T(-70.1)VT(-48.24)GERQS(48.24)GDGQES(-65.75)T(-100.13)EPVENK 0 0 1 1 O15234 O15234 O15234 CASC3 Protein CASC3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 958.792114257813 3 805.681767 2414.02347 32704.4129278543 1.6421 0.001323 189620 152.78 189620 152.78 958.791175604563 39.398 0.37225 39.398 39.197 39.569 0 34 12 3 0.946627334930427 0.00158815124080463 0.0119212819211728 4.2813E-17 1 8939 233.42 200.43 6 13163000 6768.1 7846.5 7404 7394.4 8689.3 7717.7 8744.3 8564.6 7612 4869.6 6406.7 7409.7 7434.7 7625.2 8741.7 7741.2 8867.3 8704.8 7558.8 4783.5 1 1 1 1 1 1 1 1 1 1 5162 85 4543 4845 5732 5732 148 SVAAEGALLPQTPPSPR 17 Phospho (STY) _SVAAEGALLPQTPPS(ph)PR_ SVAAEGALLPQT(0.287)PPS(0.713)PR S(-34.39)VAAEGALLPQT(-3.96)PPS(3.96)PR 0 0 1 0 Q86X27 Q86X27 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.351318359375 3 590.964381 1769.87131 NaN NaN NaN NaN NaN NaN NaN NaN 70.83 1 70.83 70.33 71.33 0 NaN NaN NaN 0.048728 1 16621 43.64 12.178 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5163 1394 4544 4846 5733 5733 2534 SVAGLKK 7 Phospho (STY) _S(ph)VAGLKK_ S(1)VAGLKK S(43.63)VAGLKK 0 0 1 1 Q99961;Q99963;Q99962 Q99961 Q99961 SH3GL1;SH3GL3;SH3GL2 Endophilin-A2;Endophilin-A3;Endophilin-A1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 490.64013671875 3 261.477245 781.409905 45590.5530541927 1.2871 0.00033654 876420 229.16 876420 229.16 490.640167492677 57.615 0.54167 57.615 57.363 57.905 0 38 18 3 0.911347389150217 0.00153695177937715 0.0647814709808059 0.04528 1 13491 43.635 43.635 1 9214800 22212 7289.5 24274 7191.8 11354 24272 11295 14912 8380.4 1279 21026 6885.6 24165 7664.7 12281 23452 11421 15359 8392.6 1549.5 1 1 1 1 1 1 1 1 1 1 5164 1797 4545 4847 5734 5734 3306 SVASNQSEMEFSSLQDMPK 19 Oxidation (M),Phospho (STY) _SVAS(ph)NQSEM(ox)EFSSLQDMPK_ SVASNQSEM(1)EFSSLQDMPK S(0.029)VAS(0.962)NQS(0.009)EMEFSSLQDMPK SVASNQSEM(143.63)EFSSLQDM(-143.63)PK S(-15.16)VAS(15.16)NQS(-20.28)EMEFS(-139.1)S(-145.68)LQDMPK 0 1 1 0 Q8N163 Q8N163 Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.748168945313 3 737.637565 2209.89087 32358.5023053971 2.1968 0.0016205 207110 152.77 207120 152.78 890.746720377933 79.503 0.76959 79.503 79.048 79.818 -1.4211E-14 87 26 5 0.922058584708169 0.00187953299135545 0.0394283894047274 5.9921E-11 1 18587 181.81 167.94 10 20786000 13203 8343.9 12458 9056.1 8277.5 12609 8516.1 12172 10415 17038 12491 7886.3 12537 9312.2 8652 12507 8709.2 12740 10196 16325 1 1 1 1 1 1 1 1 1 1 5165 1451 4546 4848 5735 5735 175 2688 SVASNQSEMEFSSLQDMPK 19 Phospho (STY) _SVAS(ph)NQSEMEFSSLQDMPK_ S(0.022)VAS(0.965)NQS(0.013)EMEFSSLQDMPK S(-16.37)VAS(16.37)NQS(-18.64)EMEFS(-153.91)S(-171.73)LQDMPK 0 0 1 0 Q8N163 Q8N163 Q8N163 CCAR2 Cell cycle and apoptosis regulator protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 885.416259765625 3 732.305927 2193.89595 33247.8260120283 1.6229 0.0011884 208620 152.78 208620 152.78 885.415606403722 86.589 0.98431 86.589 86.248 87.233 -1.4211E-14 111 33 6 0.9649945877074 0.00587127956673088 0.0693754815287077 1.4598E-16 1 20172 241.71 226.62 5 77476000 22499 12027 19851 11893 13499 20361 13734 17904 11263 14829 21280 11361 20064 12356 14074 20028 13901 18501 11218 14378 1 1 1 1 1 1 1 1 1 1 5166 1451 4546 4849 5736 5736 2688 SVAVSDEEEVEEEAER 16 Phospho (STY) _SVAVS(ph)DEEEVEEEAER_ SVAVS(1)DEEEVEEEAER S(-35.87)VAVS(35.87)DEEEVEEEAER 0 0 1 0 Q9Y6X9 Q9Y6X9 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1058.46557617188 2 943.88059 1885.74663 30125.4670450284 1.7441 0.0016462 121390 114.58 121400 114.58 1058.46201003344 61.966 0.90477 61.966 61.71 62.615 0 81 30 4 0.979610952152868 0.000935426175425907 0.0182446003682407 9.6206E-42 1 14513 348.26 318.45 2 27646000 5491.8 9147.9 5725.8 9005.5 10355 4793.2 10176 8417.3 9446.7 8703.2 5197.6 8640.9 5808.4 9187.6 10232 5054.3 10347 8565 9352 8389.9 1 1 1 1 1 1 1 1 1 1 5167 2320 4547 4850 5737 5737 4276 SVDEVFDEVVQIFDK 15 Unmodified _SVDEVFDEVVQIFDK_ 0 0 0 0 P30085 P30085 P30085 CMPK1 UMP-CMP kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.405578613281 3 590.292842 1767.8567 35449.575866825 1.9142 0.0011299 258810 152.78 258820 152.78 743.403952458401 103.33 0.084255 103.33 103.29 103.38 0 4 2 2 0.661867544681919 0.000927130700623382 0.027969823557656 0.0080008 1 24363 82.102 53.126 1 12152000 2460.9 3694.5 2204.9 3244.5 2656.2 2608.5 3178.1 2885.6 3543.6 15846 2327.7 3487.5 2241.5 3348.6 2676.6 2676.4 3220 3361.2 3480.9 14988 1 1 1 1 1 1 1 1 1 1 5168 509 4548 4851 5738 5738 SVDVILDDDLVDK 13 Unmodified _SVDVILDDDLVDK_ 0 0 0 0 P25205 P25205 P25205 MCM3 DNA replication licensing factor MCM3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.359680175781 3 482.583845 1444.7297 39662.0518613925 2.2487 0.0010852 316580 152.78 316580 152.78 635.693180829013 92.794 0.75733 92.794 92.483 93.24 0 78 25 4 0.948397154017541 0.00243857396562336 0.0289764239893517 2.0873E-06 1 21586 138.42 117.99 1 22824000 7150.3 6173.2 8122.6 5196.9 7143.4 6378.9 9529.7 8071.1 6543.5 8761.2 6769.7 5826 8115.6 5414.6 7337.9 6378.8 9504.1 8294.3 6583.1 8436.5 1 1 1 1 1 1 1 1 1 1 5169 474 4549 4852 5739 5739 SVEDDKEGHLVCR 13 Phospho (STY) _S(ph)VEDDKEGHLVCR_ S(1)VEDDKEGHLVCR S(126.8)VEDDKEGHLVCR 0 0 1 1 P49761 P49761 P49761 CLK3 Dual specificity protein kinase CLK3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.6767578125 3 541.899272 1622.67599 37148.732615656 1.841 0.00099761 281930 152.78 281930 152.78 694.674949200147 42.64 0.57611 42.64 42.453 43.03 0 53 19 4 0.98963747426952 0.00188292538746474 0.0154426969734546 5.4167E-05 1 9760 126.8 108.43 1 23494000 15392 16227 15204 15242 20409 17317 20099 17502 18157 9141.4 14564 15324 15384 15743 20398 17284 20421 17824 17998 9012.8 1 1 1 1 1 1 1 1 1 1 5170 653 4550 4853 5740 5740 1082 SVELEEALPVTTAEGMAK 18 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)S(ph)VELEEALPVTTAEGM(ox)AK_ SVELEEALPVTTAEGM(1)AK S(1)VELEEALPVTTAEGMAK SVELEEALPVTTAEGM(68.03)AK S(46.97)VELEEALPVT(-46.97)T(-52.09)AEGMAK 1 1 1 0 Q92522 Q92522 Q92522 H1FX Histone H1x MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1122.03979492188 2 1006.96033 2011.9061 29682.9200578406 0.99651 0.0010034 113790 114.58 113790 114.58 1122.04458660106 92.935 0.58289 92.935 92.687 93.269 -1.4211E-14 52 19 3 0.954371140453244 0.000645476396299864 0.019157960393696 8.4965E-08 2 21604 71.879 53.514 3 11684000 4081.7 8119.4 3959.8 8315.5 10347 4216.2 11015 8769.1 7324.4 82736 3861.9 7671.2 4073.7 8460.3 10129 4622 11079 11113 7383.5 78109 2 2 2 2 2 2 2 2 2 2 5171 1594 4551 4854 5741;5742 5741 188 2926 SVELEEALPVTTAEGMAK 18 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)VELEEALPVTTAEGMAK_ S(1)VELEEALPVTTAEGMAK S(91.92)VELEEALPVT(-91.92)T(-99.32)AEGMAK 1 0 1 0 Q92522 Q92522 Q92522 H1FX Histone H1x MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1113.54663085938 2 998.962871 1995.91119 29465.5098915792 1.093 0.0010919 114700 114.58 114700 114.58 1114.04589818155 100.75 0.42687 100.75 100.65 101.07 1.4211E-14 41 14 4 0.982702854836359 0.0027877965573668 0.173743727504386 2.1172E-16 2 23583 141.38 123.57 3 120040000 10556 33974 16460 31895 77812 13138 78736 58609 33506 293390 10011 32082 16988 32575 75312 15129 78864 65867 34979 277620 2 2 2 2 2 2 2 2 2 2 5172 1594 4551 4855 5743;5744 5743 2926 SVENLPECGITHEQR 15 Phospho (STY) _S(ph)VENLPECGITHEQR_ S(1)VENLPECGITHEQR S(95.41)VENLPECGIT(-95.41)HEQR 0 0 1 0 Q9UBF8 Q9UBF8 Q9UBF8 PI4KB Phosphatidylinositol 4-kinase beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1039.48547363281 2 924.90094 1847.78733 30352.1351801428 0.33081 0.00030597 123890 114.58 123890 114.58 1039.98419624533 51.949 0.37877 51.949 51.776 52.155 0 28 12 3 0.951931217675328 0.000704927857256762 0.0138481973930855 1.0009E-22 1 12102 269.81 225.36 2 17827000 9589.5 7759.9 10675 8408.4 9461.2 10474 8966.6 10096 9119.3 5089.8 9078.2 7334.2 10671 8627.1 9666.1 10412 9155.2 10295 8991.5 5026.3 1 1 1 1 1 1 1 1 1 1 5173 2120 4552 4856 5745 5745 3821 SVESTSPEPSK 11 Phospho (STY) _SVESTS(ph)PEPSK_ SVEST(0.018)S(0.982)PEPSK S(-93.61)VES(-38.76)T(-17.39)S(17.39)PEPS(-74.22)K 0 0 1 0 P18583 P18583 P18583 SON Protein SON MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.42529296875 2 614.260665 1226.50678 34656.971843459 2.3234 0.0014272 373070 229.16 373070 229.16 843.424233554268 39.042 0.61141 39.042 38.725 39.336 0 48 20 3 0.929160681297457 0.00158001070883972 0.0399177477810546 2.4172E-21 1 8842 267.37 228.62 5 22719000 22244 27914 19054 25344 27475 20347 31265 28048 28401 5268.9 21037 26355 19480 26099 27436 20724 31565 27995 28144 5610.4 1 1 1 1 1 1 1 1 1 1 5174 428 4553 4857 5746 5746 694 SVGDGETVEFDVVEGEK 17 Unmodified _SVGDGETVEFDVVEGEK_ 0 0 0 0 P67809;Q9Y2T7;P16989 P67809;P16989 P67809 YBX1;YBX2;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.388854980469 3 599.279261 1794.81595 35831.4494589964 1.9753 0.0011838 254930 152.78 254930 152.78 752.388651690242 78.025 0.9455 78.025 77.69 78.636 0 116 32 5 0.995582554681877 0.00664520155284415 0.0315081276739488 9.6012E-16 1 18257 214.53 157.4 1 95217000 15542 16770 17080 18596 19778 14111 18143 17685 20901 9612.5 14713 15852 17140 18910 19891 14407 18622 17890 20506 9460.6 1 1 1 1 1 1 1 1 1 1 5175 785;412 4554 4858 5747 5747 SVKEDSNLTLQEK 13 Phospho (STY) _S(ph)VKEDSNLTLQEK_ S(0.987)VKEDS(0.01)NLT(0.002)LQEK S(19.82)VKEDS(-19.82)NLT(-26.15)LQEK 0 0 1 1 P46940 P46940 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.752380371094 3 524.250187 1569.72873 35790.214785601 2.079 0.0010899 437130 229.16 437130 229.17 753.749128174142 59.505 0.65892 59.505 59.133 59.792 -7.1054E-15 72 22 4 0.9921850209733 0.00283315004709178 0.043874742590149 0.0043491 1 13914 89.011 44.371 3 31503000 18397 19811 18562 21784 9619.2 19543 8872.4 16952 22917 8215 17408 18726 18570 22211 10292 19672 9451.8 17352 22016 8127.7 1 1 1 1 1 1 1 1 1 1 5176 617 4555 4859 5748 5748 1020 SVNEILGLAESSPNEPK 17 Phospho (STY) _SVNEILGLAESS(ph)PNEPK_ SVNEILGLAES(0.076)S(0.924)PNEPK S(-71.93)VNEILGLAES(-10.83)S(10.83)PNEPK 0 0 1 0 Q9H8G2 Q9H8G2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.072021484375 3 621.962706 1862.86629 36445.6019624722 2.2156 0.001378 245630 152.78 245640 152.78 775.071772077499 94.182 0.92514 94.182 93.59 94.515 0 59 31 3 0.824891241842454 0.00437742489474798 0.141146428959162 0.0037877 1 21940 91.238 74.554 3 14480000 6718.3 5978 7607.1 5473.1 5567.3 7377 5772.1 8176.7 6626.4 27201 6360.6 5644.4 7584.2 5681 5773.9 7370.6 5889.1 8990.4 6502.1 25803 1 1 1 1 1 1 1 1 1 1 5177 1958 4556 4860 5749 5749 3566 SVPGTTSSPLVGDISPK 17 Phospho (STY) _SVPGTTSSPLVGDIS(ph)PK_ SVPGTTSSPLVGDIS(1)PK S(-71.43)VPGT(-65.37)T(-63.72)S(-55.75)S(-55.75)PLVGDIS(55.75)PK 0 0 1 0 Q9UQR0 Q9UQR0 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.392517089844 3 574.616759 1720.82845 NaN NaN NaN NaN NaN NaN NaN NaN 75.872 1 75.872 75.372 76.372 0 NaN NaN NaN 0.015529 1 17805 83.047 60.394 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5178 2233 4557 4861 5750 5750 4128 SVPNTPLRPNQQSVVNSSFSELFVK 25 Phospho (STY) _S(ph)VPNTPLRPNQQSVVNSSFSELFVK_ S(0.979)VPNT(0.021)PLRPNQQS(0.001)VVNSSFSELFVK S(16.73)VPNT(-16.73)PLRPNQQS(-32.63)VVNS(-55.3)S(-64.18)FS(-67.74)ELFVK 0 0 1 1 Q15643 Q15643 Q15643 TRIP11 Thyroid receptor-interacting protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1105.25231933594 3 952.142684 2853.40622 30885.7275457398 1.4341 0.0013655 160460 152.78 160460 152.78 1105.58686777846 99.424 0.14413 99.424 99.322 99.466 0 14 4 4 0.704196593458288 0.00320093520895561 0.123406524525442 0.001365 1 23112 98.009 84.779 6 18578000 9324.5 11073 11167 12019 10729 11684 12738 12640 12035 73406 8830.2 10466 11137 12277 10942 11877 12851 14854 11905 69413 1 1 1 1 1 1 1 1 1 1 5179 1083 4558 4862 5751 5751 1878 SVPVNNLPERSPTDSPR 17 Phospho (STY) _SVPVNNLPERS(ph)PTDSPR_ SVPVNNLPERS(0.988)PT(0.012)DSPR S(-39.91)VPVNNLPERS(19.05)PT(-19.05)DS(-46.38)PR 0 0 1 1 P49454 P49454 P49454 CENPF Centromere protein F MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.700012207031 3 648.977349 1943.91022 36868.8220119112 1.1855 0.00076935 117700 76.386 117700 76.387 725.697686147192 48.08 0.47212 48.08 47.833 48.305 0 37 15 3 0.601004380652823 0.00178123197107664 0.00780194807670107 0.0050121 1 11155 87.729 48.344 4 19271000 25292 21439 21713 21716 19717 22311 18516 21681 21710 10103 23919 20254 22043 22290 20113 22348 18993 22076 21286 10015 1 1 1 1 1 1 1 1 1 1 5180 640 4559 4863 5752 5752 1058 SVPVSFYEIR 10 Phospho (STY) _S(ph)VPVSFYEIR_ S(1)VPVSFYEIR S(41.65)VPVS(-41.65)FY(-85.4)EIR 0 0 1 0 I3L1I5 I3L1I5 I3L1I5 Putative uncharacterized protein LOC100996504 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.887268066406 2 638.802304 1275.59005 36573.2480197885 1.3006 0.0008308 179370 114.58 179370 114.58 753.384179611876 86.234 0.80305 86.234 85.957 86.76 0 70 27 4 0.890084616033152 0.00265935472167291 0.215123846618242 0.00014317 1 20107 127.03 103.42 3 31457000 21980 6050.7 25726 7162.7 9767.6 25374 8343.9 15014 6635.9 18867 20813 5722.2 25491 7579.2 10833 24526 8514.9 16030 6620 18113 1 1 1 1 1 1 1 1 1 1 5181 29 4560 4864 5753 5753 51 SVQEGENPDDGVR 13 Phospho (STY) _S(ph)VQEGENPDDGVR_ S(1)VQEGENPDDGVR S(295.67)VQEGENPDDGVR 0 0 1 0 P42696 P42696 P42696 RBM34 RNA-binding protein 34 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.880615234375 2 741.298842 1480.58313 33350.2123217894 1.585 0.001175 154570 114.58 154570 114.58 855.880344232999 35.255 0.47052 35.255 35.064 35.534 0 27 15 2 0.976198205096736 0.000841926762904937 0.0156023095326681 4.6421E-31 1 7907 295.67 252.38 1 27603000 19050 6399.3 18029 7289.7 9790.8 18374 11974 13135 8140.2 3489.6 18022 6050.3 18116 7608.6 10449 17863 11978 13483 8194.6 3589.8 1 1 1 1 1 1 1 1 1 1 5182 593 4561 4865 5754 5754 965 SVRPGASYK 9 Phospho (STY) _S(ph)VRPGASYK_ S(1)VRPGASYK S(56.85)VRPGAS(-56.85)Y(-59.91)K 0 0 1 1 Q8NEY8 Q8NEY8 Q8NEY8 PPHLN1 Periphilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 501.60986328125 3 348.83398 1043.48011 45548.8348081094 0.62992 0.00021974 437960 152.78 437960 152.78 501.609344327206 40.072 0.43249 40.072 39.833 40.265 0 34 14 4 0.88755831661038 0.00142776664761513 0.0087208075062625 0.0080246 1 9110 75.479 22.55 3 21525000 38672 15682 36779 14526 14691 41669 16860 22277 15153 3716.2 36587 14808 36876 15422 16242 40319 17011 23209 15024 4014.9 1 1 1 1 1 1 1 1 1 1 5183 1518 4562 4866 5755 5755 2788 SVSANPK 7 Phospho (STY) _SVS(ph)ANPK_ S(0.045)VS(0.955)ANPK S(-13.27)VS(13.27)ANPK 0 0 1 0 Q7KZI7 Q7KZI7 Q7KZI7 MARK2 Serine/threonine-protein kinase MARK2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.839050292969 2 391.675843 781.337134 39098.6412842358 1.019 0.0003991 585080 229.16 585080 229.16 620.839017894306 36.911 0.40998 36.911 36.691 37.101 -7.1054E-15 33 13 4 0.886045819558385 0.00190577911698212 0.0167804744584151 0.017067 1 8308 76.143 40.919 2 62116000 30967 40020 32334 40998 21789 31665 24061 32697 44710 4980.7 29308 37811 32355 41886 22786 32178 24948 32908 43240 5446.7 1 1 1 1 1 1 1 1 1 1 5184 1315 4563 4867 5756 5756 2350 SVSCDNVSK 9 Phospho (STY) _SVS(ph)CDNVSK_ S(0.358)VS(0.641)CDNVS(0.001)K S(-2.53)VS(2.53)CDNVS(-28.2)K 0 0 1 0 Q96CB8 Q96CB8 Q96CB8 INTS12 Integrator complex subunit 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 767.374145507813 2 538.209921 1074.40529 35199.734352664 1.6374 0.00088125 425790 229.16 425790 229.16 767.372204955884 40.682 0.75438 40.682 40.384 41.139 0 66 25 4 0.984760425799586 0.00182141161375846 0.0677708962543023 7.3393E-06 1 9227 145.29 107.74 3 117290000 43920 38966 43904 37079 38668 40839 42935 41715 38162 7395.6 41560 36799 44154 38247 39606 40792 43368 42032 37857 7929.3 1 1 1 1 1 1 1 1 1 1 5185 1663 4564 4868 5757 5757 3061 SVSFGGFGWIDK 12 Phospho (STY) _SVS(ph)FGGFGWIDK_ S(0.098)VS(0.902)FGGFGWIDK S(-9.65)VS(9.65)FGGFGWIDK 0 0 1 0 Q684P5 Q684P5 Q684P5 RAP1GAP2 Rap1 GTPase-activating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.315124511719 3 460.539232 1378.59587 40442.1031664945 0.92361 0.00042536 331730 152.78 331730 152.78 613.315139197086 101.26 0.25827 101.26 101.1 101.36 0 19 8 4 0.948281158424033 0.00132726814229075 0.0539464280266773 3.9931E-05 1 23786 128.96 93.548 2 21020000 5689.9 2947 6232.1 2286.6 7132.9 5590.4 7705.2 5616.4 3130.9 11518 5386.2 2780.2 6256.3 2441.2 7189.1 5478.1 7690.5 5979.7 3283.2 10976 1 1 1 1 1 1 1 1 1 1 5186 1227 4565 4869 5758 5758 2166 SVSGSPEPAAK 11 Phospho (STY) _SVSGS(ph)PEPAAK_ S(0.001)VS(0.023)GS(0.976)PEPAAK S(-28.23)VS(-16.35)GS(16.35)PEPAAK 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 784.412719726563 2 555.247361 1108.48017 35684.7826669472 2.1185 0.0011763 412720 229.16 412730 229.16 784.410691125895 39.164 0.54838 39.164 38.875 39.423 0 54 18 4 0.801906699135127 0.00250302462757324 0.0453625167020021 1.8261E-07 1 8864 171.2 104.05 3 51416000 32954 42742 29100 37882 24807 28027 24949 31390 42455 4947.2 31168 40350 29472 39034 25446 28584 25869 31505 41148 5384.8 1 1 1 1 1 1 1 1 1 1 5187 1436 4566 4870 5759 5759 2663 SVSLSMR 7 Phospho (STY) _SVS(ph)LSMR_ S(0.035)VS(0.958)LS(0.007)MR S(-14.35)VS(14.35)LS(-21.61)MR 0 0 1 0 O60238 O60238 O60238 BNIP3L BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 544.772583007813 2 430.190803 858.367054 42551.4310195278 1.3684 0.00058867 266350 114.58 266350 114.58 544.772259679537 57.373 0.60328 57.373 57.101 57.704 0 50 20 3 0.550679679979146 0.00378676786233886 0.166590166085947 0.012519 1 13424 83.948 12.568 3 26719000 23008 32651 27113 27101 44980 22515 44273 36130 32807 6709 21787 30812 27282 28092 44571 22956 44786 35915 32857 7153.5 1 1 1 1 1 1 1 1 1 1 5188 137 4567 4871 5760 5760 232 SVSPCSNVESR 11 2 Phospho (STY) _S(ph)VS(ph)PCSNVESR_ S(1)VS(0.998)PCS(0.002)NVESR S(54.15)VS(27.56)PCS(-27.56)NVES(-37.35)R 0 0 2 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 805.828369140625 2 691.246382 1380.47821 35605.4673580047 1.5841 0.001095 165760 114.58 165760 114.58 805.827564612148 36.567 1.6772 36.567 35.534 37.211 0 127 57 3 0.985717843508818 0.000578180711168858 0.028608882621402 3.5111E-06 2 8350 143.18 100.95 6 14526000 23844 20296 25770 22897 16811 25091 19691 22335 23387 7881.8 22569 19188 25734 23386 17633 25032 20006 22748 22919 7938.6 2 2 2 2 2 2 2 2 2 2 5189 2226 4568 4872 5761;5762 5762 4114;4115 SVSPPPK 7 Phospho (STY) _S(ph)VSPPPK_ S(0.706)VS(0.294)PPPK S(3.81)VS(-3.81)PPPK 0 0 1 0 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.353576660156 2 396.188587 790.36262 NaN NaN NaN NaN NaN NaN NaN NaN 43.383 1 43.383 42.883 43.883 0 NaN NaN NaN 0.043188 1 9935 57.59 27.335 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5190 940 4569 4873 5763 5763 1551;1552 SVSPPPKR 8 Phospho (STY) _S(ph)VSPPPKR_ S(0.872)VS(0.128)PPPKR S(8.32)VS(-8.32)PPPKR 0 0 1 1 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 469.27099609375 3 316.495187 946.463731 46625.6117614939 -0.42615 -0.00013487 482710 152.78 482710 152.78 469.270719848036 34.593 1.478 34.593 33.467 34.945 0 111 50 4 0.925010171707522 0.00132879017159412 0.0102648910008655 0.013004 1 7688 70.1 43.427 2 25768000 21725 18559 22473 17971 18189 21519 19866 19118 18634 2146.7 20560 17528 22537 18545 18733 21385 20107 19335 18439 2463.9 1 1 1 1 1 1 1 1 1 1 5191 940 4570 4874 5764 5764 1551;1552 SVSPPPKR 8 2 Phospho (STY) _S(ph)VS(ph)PPPKR_ S(1)VS(1)PPPKR S(104.79)VS(104.79)PPPKR 0 0 2 1 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 495.926483154297 3 343.15063 1026.43006 43861.8661137427 0.48963 0.00016802 445210 152.78 445210 152.78 495.926080069912 35.807 2.6354 35.807 34.606 37.241 0 219 90 3 0.927660590577389 0.00554700344594498 0.110304445881736 0.0007744 3 8032 104.79 71.954 1 62420000 64560 49535 72338 48603 51077 70003 49856 55414 49015 6718.8 61119 46789 72130 50304 53070 69042 50784 56352 48399 7609.1 3 3 3 3 3 3 3 3 3 3 5192 940 4570 4875 5765;5766;5767 5766 1551;1552 SVSPPPKR 8 2 Phospho (STY) _S(ph)VS(ph)PPPKR_ S(1)VS(1)PPPKR S(61.35)VS(61.35)PPPKR 0 0 2 1 Q13247 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 495.925445556641 3 343.15063 1026.43006 44613.4099424614 0.71631 0.0002458 445210 152.78 445210 152.78 495.92581770883 37.49 1.5404 37.49 37.334 38.875 0 63 54 2 0.952811119019612 0.000285300214184932 0.000703073222110561 0.01492 1 8479 61.353 44.113 1 16665000 14489 10815 15893 12092 10647 13813 11811 12417 11903 2267.9 13716 10224 15861 12366 11131 13755 11969 12577 11741 2422.9 1 1 1 1 1 1 1 1 1 1 5193 940 4570 4875 5768 5768 1551;1552 SVSPQGNSVDR 11 Phospho (STY) _SVS(ph)PQGNSVDR_ S(0.003)VS(0.996)PQGNSVDR S(-24.65)VS(24.65)PQGNS(-37.57)VDR 0 0 1 0 Q15080 Q15080 Q15080 NCF4 Neutrophil cytosol factor 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 727.846801757813 2 613.264074 1224.51359 37227.8445371835 2.0667 0.0012674 186840 114.58 186840 114.58 727.84568841036 30.847 0.41879 30.847 30.611 31.03 0 29 13 3 0.816292761621791 0.00125647352071857 0.0751935907930333 2.1798E-07 1 6880 170.26 123.67 3 12863000 12050 5584.1 11688 6157.6 25710 12410 24912 15339 5307.7 2864.2 11401 5278.4 11961 6387.9 25233 12202 24859 15359 6068.6 3052 1 1 1 1 1 1 1 1 1 1 5194 1058 4571 4876 5769 5769 1826 SVSPTFLNPSDENLK 15 Phospho (STY) _SVS(ph)PTFLNPSDENLK_ S(0.11)VS(0.735)PT(0.155)FLNPSDENLK S(-8.25)VS(6.76)PT(-6.76)FLNPS(-121.49)DENLK 0 0 1 0 Q9UKA4 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 729.711181640625 3 576.601109 1726.7815 36692.6913879153 1.8151 0.0010466 264960 152.78 264960 152.78 729.71065993204 83.952 0.83029 83.952 83.555 84.385 0 98 28 5 0.995359852591409 0.0059237071124008 0.0555226825319904 1.2671E-07 1 19581 170.16 146.93 4 83214000 9769.3 7086.9 10905 8682.3 9182.7 10632 7700 8790.4 7679.5 8846 9248.5 6703.8 10892 8848.7 9399.3 10564 7908.5 9155.3 7578.2 8533 1 1 1 1 1 1 1 1 1 1 5195 2169 4572 4877 5770 5770 3907 SVSQETFR 8 Phospho (STY) _SVS(ph)QETFR_ S(0.057)VS(0.942)QET(0.001)FR S(-12.15)VS(12.15)QET(-32.25)FR 0 0 1 0 Q75N03 Q75N03 Q75N03 CBLL1 E3 ubiquitin-protein ligase Hakai MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.803771972656 2 517.221146 1032.42774 38730.4002685304 1.7254 0.0008924 221530 114.58 221540 114.58 631.802988323884 46.35 0.37873 46.35 46.14 46.519 0 26 12 3 0.745318241847379 0.0010581042198476 0.0378927685991731 0.013833 1 10690 79.07 46.715 3 11287000 13359 23719 15455 25933 20526 14984 20771 20551 27738 5628.1 12649 22419 15504 26316 20540 15588 21322 20568 27074 5775.1 1 1 1 1 1 1 1 1 1 1 5196 1310 4573 4878 5771 5771 2338 SVSSFPVPQDNVDTHPGSGK 20 Phospho (STY) _S(ph)VSSFPVPQDNVDTHPGSGK_ S(0.945)VS(0.051)S(0.005)FPVPQDNVDTHPGSGK S(12.71)VS(-12.71)S(-23.21)FPVPQDNVDT(-116.72)HPGS(-164.97)GK 0 0 1 0 Q676U5 Q676U5 Q676U5 ATG16L1 Autophagy-related protein 16-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.430236816406 3 712.319552 2133.93683 32800.2275737591 1.5063 0.001073 214480 152.78 214480 152.78 865.42913627861 64.378 0.53302 64.378 64.12 64.654 0 60 17 4 0.987099701160443 0.00369520748618995 0.0176432936145426 1.8895E-11 1 15099 198.67 179.12 5 46789000 11959 15591 11071 15676 12055 13184 22387 21601 16181 17661 11313 14729 11231 16050 12315 13465 22122 21873 16229 17130 1 1 1 1 1 1 1 1 1 1 5197 1226 4574 4879 5772 5772 2164 SVSSNVASVSPIPAGSK 17 Phospho (STY) _SVSSNVASVS(ph)PIPAGSK_ SVSSNVAS(0.004)VS(0.996)PIPAGSK S(-40.65)VS(-41.28)S(-41.9)NVAS(-23.91)VS(23.91)PIPAGS(-68)K 0 0 1 0 Q9Y6G9 Q9Y6G9 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.3828125 3 556.273103 1665.79748 37131.0980485953 1.5678 0.00087211 274640 152.77 274640 152.78 709.380206108527 60.735 0.6405 60.735 60.369 61.009 0 52 21 4 0.993351221056306 0.00409013117806287 0.0605875866497421 6.7046E-05 1 14232 113.42 93.871 6 30715000 15915 25879 16254 23359 19571 17152 21650 20910 26625 8218.3 15061 24432 16392 24038 19699 17532 22074 21076 26060 8222.4 1 1 1 1 1 1 1 1 1 1 5198 2313 4575 4880 5773 5773 4267 SVSSVLSSLTPAK 13 Phospho (STY) _SVSSVLSSLT(ph)PAK_ SVSSVLS(0.002)S(0.011)LT(0.988)PAK S(-91.25)VS(-83.76)S(-76.04)VLS(-27.18)S(-19.72)LT(19.72)PAK 0 0 1 0 Q13330 Q13330 Q13330 MTA1 Metastasis-associated protein MTA1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.3408203125 3 452.565447 1354.67451 40801.2419264143 1.5262 0.00069068 337580 152.78 337580 152.78 605.340604079645 83.383 0.47009 83.383 83.115 83.585 0 44 15 4 0.955500676843527 0.0030580335815698 0.0568205627219673 6.662E-07 1 19493 151.8 128.05 6 13018000 6240.5 4167.9 6650.9 4544.2 3566.9 7358.6 4615.7 5410.5 3921.7 6084.7 5906.7 3939.4 6637.7 4688 3816 7237.3 4629 5686 3898.9 5854.7 1 1 1 1 1 1 1 1 1 1 5199 946 4576 4881 5774 5774 4531 SVSTTNIAGHFNDESPLGLR 20 Phospho (STY) _SVS(ph)TTNIAGHFNDESPLGLR_ S(0.142)VS(0.821)T(0.031)T(0.006)NIAGHFNDESPLGLR S(-7.61)VS(7.61)T(-14.22)T(-21.66)NIAGHFNDES(-120.05)PLGLR 0 0 1 0 Q92974 Q92974 Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.064636230469 3 732.342468 2194.00558 35111.2988987765 1.6698 0.0012228 104310 76.388 104310 76.389 809.064834841793 79.676 0.65608 79.676 79.362 80.018 0 49 22 3 0.762833779129627 0.0135879247139716 0.100887903411806 7.1709E-08 1 18663 159.56 145.4 5 52531000 15199 15246 21355 16865 18846 15288 24011 23586 17669 14110 14406 14411 21128 17192 19340 15525 24019 23762 17703 13832 1 1 1 1 1 1 1 1 1 1 5200 1636 4577 4882 5775 5775 3027 SVSVDESRPELIFR 14 Phospho (STY) _SVS(ph)VDESRPELIFR_ S(0.004)VS(0.996)VDESRPELIFR S(-24.42)VS(24.42)VDES(-60.93)RPELIFR 0 0 1 1 Q96BY7 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.331970214844 3 571.945098 1712.81347 39085.3679165597 1.4201 0.00081222 133560 76.387 133560 76.388 648.331372761956 75.763 0.57372 75.763 75.461 76.035 0 45 19 3 0.871423273107664 0.00138609522686068 0.0156420324512006 5.425E-07 1 17775 152.86 124.31 3 9801700 5765.2 5268.3 6334.5 5793.7 7560.8 5383.4 8035.4 6170.4 5824.8 6282.9 5457.5 4979.8 6361.6 5910.2 7604.9 5436.1 8096 6348.2 5841.1 6058.9 1 1 1 1 1 1 1 1 1 1 5201 1658 4578 4883 5776 5776 3055 SVTEQGAELSNEER 14 Unmodified _SVTEQGAELSNEER_ 0 0 0 0 P63104 P63104 P63104 YWHAZ 14-3-3 protein zeta/delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.444152832031 2 774.860448 1547.70634 33796.7401081298 1.8698 0.0014488 147870 114.58 147880 114.58 889.441680521643 41.523 0.37242 41.523 41.311 41.683 -7.1054E-15 38 12 4 0.978109431860763 0.00110147785038749 0.022957766711358 9.1242E-53 1 9456 373.72 311.14 1 16238000 22654 22937 22012 19161 18811 21257 22283 22118 21489 5997.3 21434 21647 22169 19938 19326 21236 22494 22334 21237 6159.1 1 1 1 1 1 1 1 1 1 1 5202 777 4579 4884 5777 5777 SVTQATQTSPGVPWPSQSANFPEFSFDFTR 30 Phospho (STY) _SVTQATQTS(ph)PGVPWPSQSANFPEFSFDFTR_ SVTQAT(0.007)QT(0.164)S(0.829)PGVPWPSQSANFPEFSFDFTR S(-39.34)VT(-38.27)QAT(-20.64)QT(-7.04)S(7.04)PGVPWPS(-47.89)QS(-64.45)ANFPEFS(-95.54)FDFT(-105.43)R 0 0 1 0 A0JNW5 A0JNW5 A0JNW5 UHRF1BP1L UHRF1-binding protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1209.90759277344 3 1132.84514 3395.5136 29819.9845572854 1.0133 0.0011479 67434 76.392 67435 76.393 1209.90687732795 101.23 0.11428 101.23 101.16 101.27 0 5 3 2 0.794089579347559 0.00263696277778203 0.0604834610723355 5.1853E-05 1 23775 118.46 105.01 9 34859000 5934.3 3791.3 7773.3 4142.7 5026.4 6788.9 5997.2 8157.8 5938.6 84376 5622.2 3583.5 7689.8 4274.6 5276.7 6862.8 6056.4 10672 5862.1 79639 1 1 1 1 1 1 1 1 1 1 5203 2 4580 4885 5778 5778 7 SVVSDLEADDVK 12 Phospho (STY) _S(ph)VVSDLEADDVK_ S(0.999)VVS(0.001)DLEADDVK S(30.87)VVS(-30.87)DLEADDVK 0 0 1 0 P11388 P11388 P11388 TOP2A DNA topoisomerase 2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.644592285156 3 452.869195 1355.58576 40486.3020373461 1.6937 0.00076701 337350 152.78 337350 152.78 605.644352121776 78.361 0.71315 78.361 78.092 78.805 1.4211E-14 55 24 3 0.724746729527687 0.00269669338490242 0.0798121975272282 1.1951E-07 1 18350 164.93 129.58 2 13752000 11575 7452.9 11190 6782.2 5449 10854 5145.5 9063.9 7409.4 4193.9 10952 7036.6 11219 7070.1 5866.5 10683 5314.3 9287.4 7214.9 4158.8 1 1 1 1 1 1 1 1 1 1 5204 363 4581 4886 5779 5779 594;595 SVVSDLEADDVK 12 Phospho (STY) _SVVS(ph)DLEADDVK_ S(0.084)VVS(0.916)DLEADDVK S(-10.37)VVS(10.37)DLEADDVK 0 0 1 0 P11388 P11388 P11388 TOP2A DNA topoisomerase 2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.979248046875 3 452.869195 1355.58576 41718.8049960864 1.3002 0.00058881 337350 152.78 337350 152.78 605.644529533415 85.419 1.061 85.419 85.098 86.159 0 75 36 3 0.85703312954823 0.00171675770940815 0.0136586060058528 0.00546 1 19972 85.163 61.331 2 10354000 4132.9 8858.5 5055 8915.2 4394.6 5093.6 4770.1 6450.2 8772.4 4873.3 3914.3 8368.7 5029.8 9089 4507.8 5302.4 4947.1 6564.3 8485.9 4738.1 1 1 1 1 1 1 1 1 1 1 5205 363 4581 4886 5780 5780 594;595 SVVSFDK 7 Phospho (STY) _S(ph)VVSFDK_ S(0.991)VVS(0.009)FDK S(20.35)VVS(-20.35)FDK 0 0 1 0 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.355102539063 2 431.191326 860.3681 38868.5737642976 2.5321 0.0010918 531470 229.16 531470 229.16 660.355061077169 66.701 0.77732 66.701 66.432 67.21 0 58 26 4 0.575548317216485 0.00246453610559434 0.07814736889193 0.01096 1 15645 86.624 46.579 2 32009000 34615 20567 38446 19494 28124 36787 30607 29324 19900 8710 32769 19423 38371 20359 29174 36024 30743 29966 20090 8880.2 1 1 1 1 1 1 1 1 1 1 5206 1076 4582 4887 5781 5781 1863;1864 SVVSFDK 7 Phospho (STY) _SVVS(ph)FDK_ S(0.046)VVS(0.954)FDK S(-13.2)VVS(13.2)FDK 0 0 1 0 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.355407714844 2 431.191326 860.3681 38396.8637697503 2.3873 0.0010294 531470 229.16 531470 229.16 660.354402369512 70.157 0.81079 70.157 69.816 70.627 0 110 27 6 0.92236226169382 0.0159321780195658 0.306583641082063 0.0037829 1 16431 98.943 65.68 2 212220000 102650 96551 102880 88232 85844 99342 91642 100960 101520 8220.3 97138 91161 103380 91280 88211 99115 93275 101460 99752 10077 1 1 1 1 1 1 1 1 1 1 5207 1076 4582 4887 5782 5782 1863;1864 SVVSFDKVK 9 Phospho (STY) _SVVS(ph)FDKVK_ SVVS(1)FDKVK S(-40.13)VVS(40.13)FDKVK 0 0 1 1 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 592.681213378906 3 363.517769 1087.53148 40108.0407825176 1.9917 0.00072403 630400 229.16 630410 229.16 592.681277117923 71.547 1.0512 71.547 71.174 72.225 0 104 35 4 0.946108677206471 0.00567717969522852 0.168644332451213 0.00011659 1 16742 128.31 95.789 2 203580000 19633 16388 20989 16446 18160 18411 18564 17644 19910 2997.2 18583 15481 21023 16914 18603 18363 18914 17819 19588 3230.6 1 1 1 1 1 1 1 1 1 1 5208 1076 4583 4888 5783 5783 1863;1864 SVVSFDKVKEPR 12 Phospho (STY) _SVVS(ph)FDKVKEPR_ S(0.048)VVS(0.952)FDKVKEPR S(-12.96)VVS(12.96)FDKVKEPR 0 0 1 2 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.562805175781 4 368.439263 1469.72794 42112.7749928832 1.2504 0.0004607 466490 171.87 466490 171.87 540.3116138101 64.781 0.7807 64.781 64.446 65.226 0 83 26 4 0.994958019114802 0.00540205966476935 0.0695728296292368 0.0029821 1 15198 92.773 76.548 2 61718000 16900 15908 16786 14424 20019 17025 23394 21065 16944 1182.4 15991 15019 16955 14943 20166 17001 23474 21009 16992 1600.9 1 1 1 1 1 1 1 1 1 1 5209 1076 4584 4889 5784 5784 1863;1864 SVWGSLAVQNSPK 13 Phospho (STY) _SVWGSLAVQNS(ph)PK_ SVWGSLAVQNS(1)PK S(-108.98)VWGS(-108.71)LAVQNS(108.71)PK 0 0 1 0 P18615 P18615 P18615 NELFE Negative elongation factor E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.012084960938 3 484.900941 1451.68099 39028.7848435649 2.378 0.0011531 315070 152.78 315070 152.78 637.676734460603 81.805 0.80885 81.805 81.505 82.314 0 87 27 4 0.972867265052074 0.00536976242000351 0.13763030029395 4.1801E-05 1 19138 129.65 107.26 3 28212000 9409.4 8787.1 9825.4 7985.5 4996.3 9928.2 4925.4 8801.8 7879.1 5769.8 8905.3 8296.3 9810.5 8279.4 5357.2 9861.6 5098 9046.4 7649 5636.7 1 1 1 1 1 1 1 1 1 1 5210 429 4585 4890 5785 5785 700 SWDVETATELLLSN 14 Unmodified _SWDVETATELLLSN_ 0 0 0 0 P61086 P61086 P61086 UBE2K Ubiquitin-conjugating enzyme E2 K MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 903.974975585938 2 789.38831 1576.76207 32762.3033903084 1.5149 0.0011958 145150 114.58 145160 114.58 903.97274059691 102.26 0.11557 102.26 102.19 102.3 0 6 3 2 0.561496489491292 0.000305867726122567 0.0079944265335557 0.00045695 1 24099 121.83 91.28 1 20185000 4207.5 5135.8 4031.3 6317.9 4703.1 4760.3 4634 5812.2 4662.6 52133 3980.7 4858.4 4077.5 6389.8 4732.1 4952.3 4721.1 7360.1 4599.4 49224 1 1 1 1 1 1 1 1 1 1 5211 748 4586 4891 5786 5786 SWGNNYPQHR 10 Phospho (STY) _S(ph)WGNNYPQHR_ S(1)WGNNYPQHR S(45.12)WGNNY(-45.12)PQHR 0 0 1 0 Q9BTL3 Q9BTL3 Q9BTL3 FAM103A1 RNMT-activating mini protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.238830566406 3 446.850692 1337.53025 NaN NaN NaN NaN NaN NaN NaN NaN 42.005 1 42.005 41.505 42.505 0 NaN NaN NaN 0.025087 1 9593 78.157 60.831 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5212 1825 4587 4892 5787 5787 3343 SWHDVQVSSAYVK 13 Phospho (STY) _S(ph)WHDVQVSSAYVK_ S(1)WHDVQVSSAYVK S(51.23)WHDVQVS(-51.23)S(-79.68)AY(-105.35)VK 0 0 1 0 O43399 O43399 O43399 TPD52L2 Tumor protein D54 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.348266601563 3 529.239734 1584.69737 37714.5653662423 1.323 0.00070017 288670 152.77 288670 152.77 682.347665964189 70.511 0.66705 70.511 70.247 70.914 0 53 22 3 0.809435607682007 0.00142968117630454 0.00407254424516026 5.8367E-05 1 16557 126.01 97.033 4 25788000 10914 14950 12764 17148 11178 13380 17263 19936 17853 8457.2 10334 14135 12738 17413 11523 13678 17296 19998 17591 8424.8 1 1 1 1 1 1 1 1 1 1 5213 110 4588 4893 5788 5788 188 SWQQTTFQNRPDSR 14 Phospho (STY) _SWQQTTFQNRPDS(ph)R_ SWQQTTFQNRPDS(1)R S(-93.62)WQQT(-63.13)T(-54.36)FQNRPDS(54.36)R 0 0 1 1 Q9BYW2 Q9BYW2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.323486328125 3 610.935485 1829.78462 38409.1884861193 1.8498 0.0011301 125030 76.387 125030 76.388 687.656940782989 51.392 0.49707 51.392 51.136 51.633 0 48 16 4 0.671078153421595 0.00258743091017344 0.0192036344254263 0.0013063 1 11956 98.169 71.44 4 19391000 22399 14207 24342 16054 21074 23059 23340 20295 14727 7816 21203 13431 24364 16484 21603 22780 23414 20700 14896 7829.4 1 1 1 1 1 1 1 1 1 1 5214 1872 4589 4894 5789 5789 3409 SWSASDPFYTNDR 13 Phospho (STY) _SWS(ph)ASDPFYTNDR_ S(0.164)WS(0.418)AS(0.418)DPFYTNDR S(-4.07)WS(0)AS(0)DPFY(-114.28)T(-85.45)NDR 0 0 1 0 Q9Y2G3 Q9Y2G3 Q9Y2G3 ATP11B Probable phospholipid-transporting ATPase IF MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 927.8994140625 2 813.317035 1624.61952 32476.8102551099 1.7857 0.0014524 140880 114.58 140880 114.58 927.898873424508 80.832 0.67408 80.832 80.52 81.194 0 70 22 5 0.7326395101996 0.00231212677837148 0.0632101001337323 5.1703E-11 1 18894 205.37 174.83 5 45398000 16711 18949 17273 21143 16494 17791 15751 17944 19436 28772 15815 17913 17350 21521 16777 18039 16170 18860 19022 27507 1 1 1 1 1 1 1 1 1 1 5215 2244 4590 4895 5790 5790 4143;4144 SWSPPPEVSR 10 Phospho (STY) _SWS(ph)PPPEVSR_ S(0.004)WS(0.996)PPPEVSR S(-24.28)WS(24.28)PPPEVS(-120.74)R 0 0 1 0 Q9NR19 Q9NR19 Q9NR19 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.851318359375 2 611.268628 1220.5227 36549.4788356593 1.806 0.001104 187450 114.58 187450 114.58 725.850109134897 61.805 2.0184 61.805 60.656 62.674 7.1054E-15 262 68 6 0.971607178106246 0.0159555494458087 0.310764384563773 5.4682E-10 2 14515 204 167.32 3 222390000 46208 185500 45033 177250 106680 54234 110480 115290 199270 32009 43720 175190 46175 180520 104760 60677 114700 114250 192850 32809 2 2 2 2 2 2 2 2 2 2 5216 2011 4591 4896 5791;5792 5792 3653 SYDYHQNWGR 10 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)YDYHQNWGR_ S(0.643)Y(0.357)DYHQNWGR S(2.55)Y(-2.55)DY(-45.76)HQNWGR 1 0 1 0 Q9H2U1 Q9H2U1 Q9H2U1 DHX36 ATP-dependent RNA helicase DHX36 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.275329589844 2 724.274973 1446.53539 38228.879842506 1.2475 0.0009035 -0.091729 -6.6437E-05 1.1557 0.00083706 724.274911358197 50.245 0.34946 50.245 50.099 50.449 0 21 11 2 0.964814727761519 0.000670470462642704 0.00682434667638171 8.3292E-07 1 11676 111.01 101.72 3 12850000 11253 11067 11198 11504 17277 12271 17553 13685 12053 16168 10648 10457 11354 11797 17172 12314 17703 14160 12126 15541 1 1 1 1 1 1 1 1 1 1 5217 1923 4592 4897 5793 5793 3490 SYELPDGQVITIGNER 16 Unmodified _SYELPDGQVITIGNER_ 0 0 0 0 P60709;Q6S8J3;Q562R1;A5A3E0;Q9BYX7;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 P63261 ACTB;POTEE;ACTBL2;POTEF;POTEKP;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Beta-actin-like protein 2;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1011.03369140625 2 895.949598 1789.88464 31703.0235993989 1.1441 0.0010251 127890 114.58 127890 114.58 1011.03183631367 85.45 0.75026 85.45 84.953 85.703 -1.4211E-14 78 25 4 0.983164052725324 0.00168615859440344 0.0505276430032977 2.1916E-15 1 19912 234.9 183.17 1 24276000 7518.8 5570.3 8748.2 6799.8 11132 9823.9 11629 10475 7645.1 26479 7119.3 5269 8768.4 6955.4 11159 9770 11705 11280 7712.4 25175 1 1 1 1 1 1 1 1 1 1 5218 742;783;766 4593 4898 5794 5794 SYGRPPPDVEGMTSLK 16 Acetyl (Protein N-term),Oxidation (M),Phospho (STY) _(ac)S(ph)YGRPPPDVEGM(ox)TSLK_ SYGRPPPDVEGM(1)TSLK S(0.538)Y(0.462)GRPPPDVEGMTSLK SYGRPPPDVEGM(53.83)TSLK S(0.66)Y(-0.66)GRPPPDVEGMT(-38.35)S(-42.96)LK 1 1 1 1 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.339660644531 3 624.61302 1870.81723 34937.0853937608 1.5924 0.00099462 122300 76.388 122300 76.389 701.336913750877 59.26 1.1186 59.26 58.932 60.05 0 110 38 4 0.804350149362852 0.00538519033980435 0.0840021814023858 0.011077 1 13869 53.828 40.951 4 26898000 17208 24631 19678 20867 26821 18380 25612 22324 25036 6258.2 16292 23247 19757 21615 26778 18595 26113 22429 24728 6409.5 1 1 1 1 1 1 1 1 1 1 5219 832 4594 4899 5795 5795 114 1340 SYGRPPPDVEGMTSLK 16 Acetyl (Protein N-term),Phospho (STY) _(ac)S(ph)YGRPPPDVEGMTSLK_ S(0.913)Y(0.087)GRPPPDVEGMTSLK S(10.23)Y(-10.23)GRPPPDVEGMT(-110.65)S(-115.49)LK 1 0 1 1 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1043.50183105469 2 928.418434 1854.82232 30345.1039291082 1.3555 0.0012585 123420 114.58 123420 114.58 1043.50188170066 75.406 1.5282 75.406 74.973 76.501 0 198 52 5 0.983814525986503 0.00178658600695657 0.0333540319040738 1.3068E-10 2 17800 126.76 113.34 4 94204000 10773 13575 10615 14398 45359 10505 46817 26056 14394 29726 10193 12828 11126 14671 43969 10954 46698 26429 15578 28594 2 2 2 2 2 2 2 2 2 2 5220 832 4594 4900 5796;5797 5797 1340 SYKYSPK 7 Phospho (STY) _SYKYS(ph)PK_ SYKY(0.001)S(0.999)PK S(-34.52)Y(-43.32)KY(-32.47)S(32.47)PK 0 0 1 1 P49792;Q7Z3J3;P0DJD0;P0DJD1;A6NKT7 P49792 P49792 RANBP2;RGPD4;RGPD1;RGPD2;RGPD3 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.308349609375 3 318.144043 951.410299 42492.3171188009 1.4295 0.00045477 720310 229.16 720310 229.16 547.307072669249 46.432 0.57401 46.432 46.14 46.714 7.1054E-15 56 19 4 0.962445024922776 0.00332271020870414 0.0580774752678414 0.018319 1 10686 60.641 26.771 4 49994000 24613 26270 26548 26111 17926 25968 23503 26276 26474 2323.5 23297 24816 26526 26817 18782 26043 23737 26415 25996 2796 1 1 1 1 1 1 1 1 1 1 5221 655 4595 4901 5798 5798 1102 SYKYSPKTPPR 11 2 Phospho (STY) _SYKYS(ph)PKT(ph)PPR_ S(0.025)Y(0.006)KY(0.106)S(0.909)PKT(0.954)PPR S(-16.49)Y(-26.55)KY(-11.2)S(11.2)PKT(13.61)PPR 0 0 2 2 P49792;Q7Z3J3;P0DJD0;P0DJD1;A6NKT7 P49792 P49792 RANBP2;RGPD4;RGPD1;RGPD2;RGPD3 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.716430664063 3 495.217592 1482.63095 37007.7145911615 1.4865 0.00073616 462750 229.16 462750 229.16 724.380038329663 47.21 0.77567 47.21 46.519 47.295 -7.1054E-15 67 26 3 0.965946489803543 0.00638051079838902 0.166318867293104 0.041928 1 10878 58.824 49.263 10 56071000 26554 45407 30293 45081 19397 36213 21500 34866 50958 28756 25141 42893 30159 46165 20385 36731 22591 35892 49030 27884 1 1 1 1 1 1 1 1 1 1 5222 655 4596 4902 5799 5799 1102;4473 SYSAGNASQLEQLSR 15 Phospho (STY) _SYS(ph)AGNASQLEQLSR_ S(0.353)Y(0.005)S(0.641)AGNASQLEQLSR S(-2.59)Y(-20.78)S(2.59)AGNAS(-31.98)QLEQLS(-55.28)R 0 0 1 0 Q14678 Q14678 Q14678 KANK1 KN motif and ankyrin repeat domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 640.973327636719 3 564.252591 1689.73594 39983.4398086336 2.0004 0.0011287 135380 76.388 135380 76.389 640.640361271029 63.769 0.37073 63.769 63.549 63.92 0 31 12 3 0.419813246751614 0.00111831358958227 0.0133298565696688 0.016502 1 14984 62.167 39.288 5 10229000 6905.3 6909.2 5278 6279.3 6581.3 7166.8 6309.1 7033.3 6631.9 3758.1 6528.1 6523.3 5423.7 6500.1 6598.2 7149.4 6444 7173.4 6530 3701.5 1 1 1 1 1 1 1 1 1 1 5223 1017 4597 4903 5800 5800 1737 SYSFPKPGHR 10 Phospho (STY) _S(ph)YSFPKPGHR_ S(0.696)Y(0.001)S(0.304)FPKPGHR S(3.6)Y(-29)S(-3.6)FPKPGHR 0 0 1 1 P43405 P43405 P43405 SYK Tyrosine-protein kinase SYK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.301513671875 3 419.192167 1254.55467 41133.2523514307 0.99598 0.00041751 364450 152.78 364450 152.78 571.967422013005 52.079 1.2354 52.079 51.343 52.578 0 125 42 4 0.959524286182901 0.00230999637266363 0.00750210769036161 0.014026 1 12045 62.088 24.533 3 55185000 24846 14175 23707 15304 18636 31253 21708 21950 15809 4002.1 23507 13397 23881 15901 19249 30505 21788 22499 15849 4276.5 1 1 1 1 1 1 1 1 1 1 5224 598 4598 4904 5801 5801 974 SYSPDGK 7 Phospho (STY) _SYS(ph)PDGK_ S(0.005)YS(0.995)PDGK S(-22.92)Y(-68.76)S(22.92)PDGK 0 0 1 0 P43243 P43243 P43243 MATR3 Matrin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.321472167969 2 417.157484 832.300414 38708.0476115667 1.9534 0.00081486 549340 229.16 549350 229.16 646.320990835704 40.007 2.113 40.007 39.226 41.339 0 234 72 6 0.93747874419453 0.0123175168809517 0.47533814271619 0.00052015 2 9029 131.22 88.007 3 1665100000 149960 131360 141090 128150 141220 145550 156780 147170 128190 13572 141870 124070 142610 132050 143500 145170 158060 147970 127700 16186 2 2 2 2 2 2 2 2 2 2 5225 595 4599 4905 5802;5803 5802 970 SYSPDGKESPSDKK 14 Phospho (STY) _SYS(ph)PDGKESPSDKK_ S(0.022)Y(0.007)S(0.97)PDGKESPSDKK S(-16.37)Y(-21.19)S(16.37)PDGKES(-49.31)PS(-63.66)DKK 0 0 1 2 P43243 P43243 P43243 MATR3 Matrin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.342041015625 4 401.926451 1603.6767 39000.4888456161 2.4525 0.00098571 570160 229.16 570160 229.16 631.339845156333 42.275 0.99712 42.275 41.798 42.795 -7.1054E-15 114 34 5 0.922978458176321 0.0023245450868 0.0299430687894009 0.0047738 1 9613 88.551 60.582 5 89102000 17833 16386 18494 18804 22845 18901 27778 21763 18521 8086.2 16877 15494 18647 19161 22987 18992 27785 21963 18667 8117.8 1 1 1 1 1 1 1 1 1 1 5226 595 4600 4906 5804 5804 970 SYSPDHR 7 Phospho (STY) _SYS(ph)PDHR_ S(0.02)YS(0.98)PDHR S(-16.86)Y(-45.99)S(16.86)PDHR 0 0 1 0 Q14241 Q14241 Q14241 TCEB3 Transcription elongation factor B polypeptide 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.761169433594 2 471.179282 940.34401 40394.7356099326 1.5072 0.00071018 243180 114.58 243180 114.58 585.760373193022 25.017 0.32031 25.017 24.832 25.152 0 22 10 3 0.784248708371253 0.00159341225116861 0.0272771589426139 0.0023747 1 5590 101.43 42.513 3 5600000 4256.3 5943.6 4737.8 5403 5507.7 5026.2 4998.1 5342.4 6129.6 3585.2 4029.3 5611.6 4751.5 5574.6 5537.6 5065.5 5143.1 5454.6 6000.1 3499.5 1 1 1 1 1 1 1 1 1 1 5227 1003 4601 4907 5805 5805 1702 SYSSPDITQAIQEEEK 16 Phospho (STY) _SYS(ph)SPDITQAIQEEEK_ S(0.119)YS(0.761)S(0.119)PDITQAIQEEEK S(-8.04)Y(-82.86)S(8.04)S(-8.04)PDIT(-62.65)QAIQEEEK 0 0 1 0 P40818 P40818 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 788.721740722656 3 635.610221 1903.80883 34842.9978788665 1.8607 0.0011827 240360 152.78 240360 152.78 788.719988461732 78.829 0.55457 78.829 78.551 79.106 0 59 18 4 0.969640982904214 0.0036866481523519 0.0372900850454371 4.5992E-08 1 18463 173.21 137.88 5 26345000 21023 39843 20928 40129 31215 22153 29379 29457 39462 10769 19893 37640 21202 40897 31053 23119 30269 29589 38509 10822 1 1 1 1 1 1 1 1 1 1 5228 572 4602 4908 5806 5806 921;922 SYSSPDITQAIQEEEKR 17 Phospho (STY) _SYSS(ph)PDITQAIQEEEKR_ S(0.001)YS(0.402)S(0.597)PDITQAIQEEEKR S(-26.51)Y(-99.22)S(-1.71)S(1.71)PDIT(-45.33)QAIQEEEKR 0 0 1 1 P40818 P40818 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.754943847656 3 687.643925 2059.90994 33937.9968841117 1.7708 0.0012177 222170 152.78 222170 152.78 840.753482319257 73.407 1.1807 73.407 72.604 73.785 0 147 40 7 0.993552984782355 0.0048421519065342 0.0629456805982855 7.6836E-16 1 17289 222.62 202.37 5 199310000 24339 23704 28690 24197 16807 28457 16855 23801 26109 17496 23047 22395 28494 24883 17767 28308 17408 24582 25369 17025 1 1 1 1 1 1 1 1 1 1 5229 572 4603 4909 5807 5807 921;922 SYTLVVAK 8 Phospho (STY) _S(ph)YTLVVAK_ S(0.993)YT(0.007)LVVAK S(21.64)Y(-80.81)T(-21.64)LVVAK 0 0 1 0 O43491 O43491 O43491 EPB41L2 Band 4.1-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.907165527344 2 480.743726 959.472899 37029.4001369761 2.5925 0.0012463 476680 229.16 476690 229.16 709.90670564963 74.509 0.93116 74.509 74.218 75.149 1.4211E-14 99 31 5 0.966511901750767 0.00595913719848004 0.305117445608201 2.5741E-08 1 17460 177.06 91.388 3 258140000 49669 17724 51141 18531 41606 49077 47854 38096 18537 7032 47005 16748 51306 19469 42846 47705 47609 38851 19534 7503.1 1 1 1 1 1 1 1 1 1 1 5230 114 4604 4910 5808 5808 198 TAAPSPSLLYK 11 Phospho (STY) _TAAPS(ph)PSLLYK_ TAAPS(0.935)PS(0.065)LLYK T(-47.32)AAPS(11.57)PS(-11.57)LLY(-76.89)K 0 0 1 0 Q9BTC0 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.469665527344 2 614.304679 1226.59481 35063.6698609846 2.3954 0.0014715 373050 229.16 373050 229.16 843.969545044632 77.106 0.34149 77.106 76.884 77.225 0 25 11 3 0.473244319656372 0.000835213269426483 0.0153774731017394 1.2948E-06 1 18096 141.73 99.332 4 8440800 12277 11919 15118 12820 8375.2 13382 11023 13101 12481 22239 11628 11264 14982 13117 8936.1 13427 11133 13822 12253 21244 1 1 1 1 1 1 1 1 1 1 5231 1822 4605 4911 5809 5809 3339 TADSQETK 8 Phospho (STY) _TADS(ph)QETK_ TADS(1)QETK T(-48.53)ADS(37.67)QET(-37.67)K 0 0 1 0 P25205 P25205 P25205 MCM3 DNA replication licensing factor MCM3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.355346679688 2 480.189512 958.364471 36803.875739909 2.2552 0.0010829 477240 229.16 477240 229.17 709.354062112722 29.489 0.58415 29.489 29.31 29.895 0 45 19 3 0.869862084055324 0.00208284242539985 0.0504545415327272 2.651E-05 1 6571 146.79 89.52 3 30989000 22792 26890 25430 20861 62874 24961 66318 37656 25958 10090 21577 25367 25919 21853 61605 25015 66236 37584 27325 10372 1 1 1 1 1 1 1 1 1 1 5232 474 4606 4912 5810 5810 788 TAEISSTALRSSPIMR 16 Phospho (STY) _TAEISSTALRSS(ph)PIMR_ TAEISST(0.001)ALRS(0.247)S(0.752)PIMR T(-61.98)AEIS(-47.39)S(-39.61)T(-31.53)ALRS(-4.83)S(4.83)PIMR 0 0 1 1 O43314 O43314 O43314 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.351501464844 3 600.628893 1798.86485 36960.3674059304 1.117 0.00067092 127180 76.388 127180 76.389 677.016599091987 62.458 0.46312 62.458 62.181 62.644 0 46 15 4 0.959995053520235 0.00422662510319656 0.070718482261134 8.802E-05 1 14664 113.54 79.701 6 20832000 8502.3 11228 10371 12116 14502 9204.2 15415 12038 11748 6947 8052.3 10611 10388 12339 14482 9404.4 15547 12174 11747 6820.1 1 1 1 1 1 1 1 1 1 1 5233 105 4607 4913 5811 5811 174 TAENATSGETLEENEAGD 18 Unmodified _TAENATSGETLEENEAGD_ 0 0 0 0 Q9UQ80 Q9UQ80 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1033.9638671875 2 919.382139 1836.74972 30947.9534404274 1.1338 0.0010424 124630 114.58 124630 114.58 1033.96345968461 43.614 0.69509 43.614 43.299 43.994 0 94 23 5 0.991448771567378 0.00187021254115603 0.0106658135329947 8.3773E-16 1 9951 243.37 224.95 1 550510000 9557.4 11149 10794 10691 6982.2 9234.8 7138.5 10580 11566 1694.8 9048.4 10529 10751 10982 7317 9341.5 7380.1 10611 11224 1840.7 1 1 1 1 1 1 1 1 1 1 5234 2227 4608 4914 5812 5812 TAENATSGETLEENEAGD 18 Phospho (STY) _TAENATSGET(ph)LEENEAGD_ TAENATSGET(1)LEENEAGD T(-86.12)AENAT(-52.92)S(-42.73)GET(42.73)LEENEAGD 0 0 1 0 Q9UQ80 Q9UQ80 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1074.44836425781 2 959.365304 1916.71606 30610.6447848276 1.6751 0.001607 119430 114.58 119440 114.58 1074.44759181514 44.544 0.92294 44.544 44.228 45.151 0 92 31 4 0.981787371172553 0.00100877906433315 0.0258718520069349 4.8245E-16 1 10214 239.86 228.55 4 38228000 3584.9 2621.3 3193.3 2806.2 8646.2 3296.3 8661.3 4422.6 3083 3906 3390.8 2477.3 3304.7 2877.9 8447.1 3303.6 8663 4510.2 3278.6 3780.4 1 1 1 1 1 1 1 1 1 1 5235 2227 4608 4915 5813 5813 4840 TAESQTPTPSATSFFSGK 18 Phospho (STY) _TAESQT(ph)PTPSATSFFSGK_ TAES(0.001)QT(0.788)PT(0.21)PSATSFFSGK T(-39.34)AES(-27.56)QT(5.74)PT(-5.74)PS(-45.09)AT(-98.6)S(-114.49)FFS(-133.26)GK 0 0 1 0 P55265 P55265 P55265 ADAR Double-stranded RNA-specific adenosine deaminase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 795.061157226563 3 641.950577 1922.8299 34812.4890882808 1.9462 0.0012493 237990 152.78 237990 152.78 795.060052639665 80.382 0.90936 80.382 80.018 80.928 0 97 30 4 0.991620638113292 0.0057731006492968 0.0288366948820387 4.7207E-08 2 18788 171.64 152.81 8 68103000 44703 39288 49370 44471 22467 47577 22599 39026 43793 37503 42318 37144 49116 45395 24410 47514 23578 40607 42312 36217 2 2 2 2 2 2 2 2 2 2 5236 722 4609 4916 5814;5815 5814 4484 TAFDDAIAELDTLNEDSYK 19 Unmodified _TAFDDAIAELDTLNEDSYK_ 0 0 0 0 P61981 P61981 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 864.10595703125 3 710.995301 2129.96407 34364.5677708508 1.2761 0.00090732 214880 152.78 214880 152.78 864.104739169241 101.17 0.14317 101.17 101.1 101.24 1.4211E-14 14 4 5 1 0.000441697921745421 0.0290273994961896 0.012457 1 23763 71.592 47.054 1 72885000 8728.1 8576.2 8357.7 8303.3 8793.4 8253 11200 9169.9 9862.8 51400 8257.6 8100.1 8446.9 8541.4 8930.6 8382.9 11249 10711 9788.3 48612 1 1 1 1 1 1 1 1 1 1 5237 753 4610 4917 5816 5816 TAFDEAIAELDTLNEDSYK 19 Unmodified _TAFDEAIAELDTLNEDSYK_ 0 0 0 0 P27348 P27348 P27348 YWHAQ 14-3-3 protein theta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 868.777099609375 3 715.667185 2143.97972 34303.2952869604 1.0254 0.00073387 213470 152.78 213470 152.78 868.776753298514 101.34 0.11535 101.34 101.27 101.39 0 9 3 3 0.706140830831756 0.00245406019171901 0.0224204016807563 9.5685E-06 1 23815 134.21 116.39 1 41243000 13361 15410 11883 15226 16974 10384 15717 20402 16659 106880 12638 14556 12110 15567 16908 10951 16085 23296 16397 101110 1 1 1 1 1 1 1 1 1 1 5238 485 4611 4918 5817 5817 TAFDEAIAELDTLSEESYK 19 Unmodified _TAFDEAIAELDTLSEESYK_ 0 0 0 0 P63104 P63104 P63104 YWHAZ 14-3-3 protein zeta/delta MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 864.111572265625 3 711.335435 2130.98448 NaN NaN NaN NaN NaN NaN NaN NaN 102.1 1 102.1 101.6 102.6 0 NaN NaN NaN 0.056504 1 24048 40.432 28.266 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5239 777 4612 4919 5818 5818 TAFQEALDAAGDK 13 Unmodified _TAFQEALDAAGDK_ 0 0 0 0 P10599 P10599 P10599 TXN Thioredoxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.993530273438 3 446.217496 1335.63066 40312.1470025637 1.5828 0.00070625 342380 152.77 342380 152.78 598.991871234268 82.736 0.86491 82.736 82.398 83.262 0 62 29 4 0.863083037504956 0.00456351585063658 0.0433198917322824 0.00024865 1 19362 101.2 84.571 1 15768000 10621 8410.3 10688 7313.2 11529 11848 10558 10479 8554.3 4472.9 10051 7938.6 10767 7648.8 11634 11665 10738 10699 8525.5 4454.3 1 1 1 1 1 1 1 1 1 1 5240 354 4613 4920 5819 5819 TAFYNEDDSEEEQR 14 Phospho (STY) _TAFYNEDDS(ph)EEEQR_ TAFYNEDDS(1)EEEQR T(-108)AFY(-170.07)NEDDS(108)EEEQR 0 0 1 0 Q8WWQ0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1021.41650390625 2 906.833443 1811.65233 31522.4943971594 0.89798 0.00081431 126350 114.58 126350 114.58 1021.41472616611 51.826 1.2963 51.826 51.546 52.842 7.1054E-15 122 44 3 0.958503274812492 0.000469978875290614 0.02159930593479 1.8245E-22 2 12234 252.87 221.88 3 30117000 20802 20253 22400 18887 14929 22697 16511 19483 21505 15167 19690 19124 22375 19537 15619 22568 16868 20124 21007 14732 2 2 2 2 2 2 2 2 2 2 5241 1577 4614 4921 5820;5821 5821 2903 TALPTSGSSAGELELLAGEVPAR 23 Phospho (STY) _TALPTSGS(ph)SAGELELLAGEVPAR_ TALPTS(0.014)GS(0.836)S(0.149)AGELELLAGEVPAR T(-50.92)ALPT(-32.35)S(-17.79)GS(7.49)S(-7.49)AGELELLAGEVPAR 0 0 1 0 Q9Y6I3 Q9Y6I3 Q9Y6I3 EPN1 Epsin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.106262207031 3 769.3807 2305.12027 34036.86681728 1.3539 0.0010417 99285 76.388 99286 76.389 846.102252444436 99.228 0.34322 99.228 99.066 99.409 0 42 11 5 0.954918308776765 0.00899699736293904 0.135934530280128 6.1655E-18 1 23035 235.68 197.3 5 63319000 7791.2 7629.2 6903.6 8994.7 8336.6 6718.1 8270.4 9284 7190.6 53809 7369.1 7214.8 7019.9 9115.5 8373.5 6969 8392.2 10834 7140.7 50883 1 1 1 1 1 1 1 1 1 1 5242 2314 4615 4922 5822 5822 4269 TALPTSGSSAGELELLAGEVPAR 23 Phospho (STY) _TALPTSGS(ph)SAGELELLAGEVPAR_ TALPT(0.008)S(0.109)GS(0.816)S(0.067)AGELELLAGEVPAR T(-36.57)ALPT(-20.27)S(-8.73)GS(8.73)S(-10.85)AGELELLAGEVPAR 0 0 1 0 Q9Y6I3 Q9Y6I3 Q9Y6I3 EPN1 Epsin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1268.65087890625 2 1153.56741 2305.12027 29632.7275270785 1.2979 0.0014972 99328 114.58 99330 114.58 1268.64887077714 99.216 0.14147 99.216 99.151 99.292 1.4211E-14 8 4 2 0.620065384093042 0.000586153686471553 0.0272503331139419 0.0025965 1 23042 97.488 80.207 5 13555000 3239.6 3576.8 3600.8 3546.6 1921.8 3727.6 3442.4 6491 4513.4 71884 3066.9 3378.7 3587.4 3646.3 2071.9 3898.3 3460.4 8569.8 4407.9 67837 1 1 1 1 1 1 1 1 1 1 5243 2314 4615 4922 5823 5823 4269 TAMSTPHVAEPAENEQDEQDENGAEASADLR 31 Oxidation (M) _TAM(ox)STPHVAEPAENEQDEQDENGAEASADLR_ TAM(1)STPHVAEPAENEQDEQDENGAEASADLR TAM(238.71)STPHVAEPAENEQDEQDENGAEASADLR 0 1 0 0 P26038 P26038 P26038 MSN Moesin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 890.651794433594 4 832.859014 3327.40695 33087.7269633997 1.4259 0.0011875 68786 57.289 68787 57.29 890.649784567244 45.35 0.78473 45.35 44.681 45.466 7.1054E-15 45 26 2 0.687644737608284 0.00121334366561685 0.0059821856296327 4.0945E-18 2 10426 238.71 220.8 1 47424000 10502 7582.5 11947 8235.5 11080 12474 10772 10643 9206.8 7058.8 9943.4 7166.7 11936 8484.2 11289 12305 10937 10959 9150.7 6893 2 2 2 2 2 2 2 2 2 2 5244 478 4616 4923 5824;5825 5824 66 TAMSTPHVAEPAENEQDEQDENGAEASADLR 31 Unmodified _TAMSTPHVAEPAENEQDEQDENGAEASADLR_ 0 0 0 0 P26038 P26038 P26038 MSN Moesin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 886.652221679688 4 828.860285 3311.41204 32983.5922803971 1.556 0.0012897 69118 57.289 69119 57.29 886.650283823995 52.309 0.56629 52.309 52.041 52.607 0 107 19 7 0.988654345565227 0.00613457013236494 0.0334837095662467 5.3297E-26 1 12148 278.24 255.68 1 101980000 5182.4 4648.5 6230.1 5350.8 6303 5549.6 7582.9 6842.4 5370.7 4920.8 4907.8 4395.3 6216.4 5454.3 6408 5579.3 7596.7 6961.6 5393.1 4791.9 1 1 1 1 1 1 1 1 1 1 5245 478 4616 4924 5826 5826 TAPPASPEAR 10 Phospho (STY) _TAPPAS(ph)PEAR_ TAPPAS(1)PEAR T(-50.92)APPAS(50.92)PEAR 0 0 1 0 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.325378417969 2 538.742246 1075.46994 38550.0606547779 1.7691 0.0009531 212680 114.58 212690 114.58 653.324002680148 29.301 0.93729 29.301 29.016 29.954 0 75 31 4 0.993199488667344 0.0021142684654245 0.0573109348269442 0.00016192 1 6489 125.46 43.449 2 44757000 15381 9594.3 14996 9971.1 10608 15384 11157 9624.4 10699 3940.2 14553 9065.5 15070 10302 11031 15113 11318 9995.8 10576 3932.9 1 1 1 1 1 1 1 1 1 1 5246 1699 4617 4925 5827 5827 3134 TAPSSPLTSPSDTR 14 Phospho (STY) _TAPSS(ph)PLTSPSDTR_ TAPS(0.003)S(0.997)PLTSPSDTR T(-88.46)APS(-24.66)S(24.66)PLT(-41.72)S(-61.2)PS(-70.59)DT(-101.16)R 0 0 1 0 Q8IWB9 Q8IWB9 Q8IWB9 TEX2 Testis-expressed sequence 2 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 863.41845703125 2 748.83506 1495.65557 34008.3865583255 1.8559 0.0013898 153010 114.58 153010 114.58 863.415968184773 41.738 0.45321 41.738 41.512 41.965 0 27 15 2 0.95955591179384 0.000893762711940739 0.0118911321664006 5.3056E-16 1 9523 239.35 216.43 7 16534000 15217 11189 15401 11529 19377 14450 19572 17424 10823 7657.8 14400 10572 15547 11864 19424 14406 19674 17593 11050 7614 1 1 1 1 1 1 1 1 1 1 5247 1414 4618 4926 5828 5828 2577 TAPTLSPEHWK 11 Phospho (STY) _TAPTLS(ph)PEHWK_ TAPT(0.007)LS(0.993)PEHWK T(-69.19)APT(-21.64)LS(21.64)PEHWK 0 0 1 0 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 602.65380859375 3 449.542865 1345.60677 40504.9050057024 1.3461 0.00060515 339850 152.78 339850 152.78 602.318401895978 68.918 1.4831 68.918 68.005 69.489 0 137 50 5 0.924023181332806 0.00506967130030636 0.0376905018234359 3.8747E-05 1 16133 130.61 113.84 3 133980000 30266 21046 31578 24344 22252 30010 22006 27493 30020 6288.3 28644 19900 31607 24885 23136 29808 22632 27864 29280 6557.4 1 1 1 1 1 1 1 1 1 1 5248 1699 4619 4927 5829 5829 3127 TAPTSTIAPGVVMASSPALPTQPAEEAAR 29 Phospho (STY) _TAPTSTIAPGVVMASS(ph)PALPTQPAEEAAR_ TAPTSTIAPGVVMAS(0.012)S(0.988)PALPTQPAEEAAR T(-96.27)APT(-91.24)S(-86.04)T(-80.2)IAPGVVMAS(-19.16)S(19.16)PALPT(-41.24)QPAEEAAR 0 0 1 0 P16220 P16220 P16220 CREB1 Cyclic AMP-responsive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1044.86511230469 3 967.806973 2900.39909 30941.9025682268 0.98122 0.00094963 78929 76.388 78930 76.389 1044.52966533749 80.954 0.41157 80.954 80.752 81.164 0 47 13 4 0.983330328806395 0.00338775970415238 0.0454305195095758 1.8488E-07 1 18947 142.68 132.34 7 25265000 3043.7 2727.4 3308.2 2661.4 2303.2 2587.9 3036.2 3037 2079.8 14029 2881.1 2576.1 3305 2735.5 2406.1 2629.3 3029.2 3451.7 2092.7 13280 1 1 1 1 1 1 1 1 1 1 5249 405 4620 4928 5830 5830 648 TAQALSSGSGSQETK 15 Phospho (STY) _TAQALSSGSGS(ph)QETK_ TAQALSSGSGS(1)QETK T(-119.64)AQALS(-90.6)S(-71.35)GS(-37.24)GS(37.24)QET(-63.59)K 0 0 1 0 O95747 O95747 O95747 OXSR1 Serine/threonine-protein kinase OSR1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.336242675781 3 511.226042 1530.6563 37943.6705127462 2.3036 0.0011777 298840 152.77 298840 152.78 664.334292047709 42.139 0.56955 42.139 41.855 42.425 0 57 19 4 0.945094279524357 0.00286295831732186 0.0479406172747273 3.6761E-07 1 9645 159.01 146.38 6 24418000 14361 16213 14442 12933 21224 14563 21078 17708 15149 9637.4 13589 15297 14621 13506 21131 14582 21301 17931 15199 9484.6 1 1 1 1 1 1 1 1 1 1 5250 258 4621 4929 5831 5831 432 TAQVPSPPR 9 Phospho (STY) _TAQVPS(ph)PPR_ TAQVPS(1)PPR T(-92.09)AQVPS(92.09)PPR 0 0 1 0 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.328918457031 2 516.747331 1031.48011 39015.2773890246 1.6217 0.00083801 221740 114.58 221740 114.58 631.328381310632 44.005 2.7536 44.005 42.482 45.236 0 337 94 5 0.997734601374052 0.00629668269530443 0.0289741790151654 3.2304E-05 2 9996 137.4 105.46 2 327890000 110130 125470 107070 128280 122690 107800 113880 120650 128770 13092 104200 118540 108170 131210 123480 109150 116750 120920 126420 15120 2 2 2 2 2 2 2 2 2 2 5251 2180 4622 4930 5832;5833 5833 3942 TAQVPSPPR 9 Phospho (STY) _TAQVPS(ph)PPR_ TAQVPS(1)PPR T(-41.83)AQVPS(41.83)PPR 0 0 1 0 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 421.221557617188 3 344.83398 1031.48011 48450.0419376678 -0.0082837 -2.8565E-06 221520 76.388 221520 76.388 421.221607611636 44.079 2.2911 44.079 42.598 44.889 7.1054E-15 212 78 4 0.921683321624145 0.00273193600020183 0.0362496105626041 0.01125 1 10198 64.945 40.79 2 46165000 12097 11262 12275 12190 12968 11755 12168 12193 13021 1511.2 11447 10644 12357 12453 13109 11810 12448 12259 12811 1705.2 1 1 1 1 1 1 1 1 1 1 5252 2180 4622 4930 5834 5834 3942 TASEGDGGAAAGAAAAGAR 19 Phospho (STY) _TAS(ph)EGDGGAAAGAAAAGAR_ T(0.001)AS(0.999)EGDGGAAAGAAAAGAR T(-31.98)AS(31.98)EGDGGAAAGAAAAGAR 0 0 1 0 Q9Y4H2 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 920.924743652344 2 806.341572 1610.66859 32661.1116329059 1.3452 0.0010847 142100 114.58 142100 114.58 920.923877401986 35.563 0.29223 35.563 35.418 35.71 0 23 9 3 0.963020747849776 0.000590011628110769 0.0148554165957152 2.7092E-53 1 8008 364.38 328.58 2 10893000 15577 2632.3 14447 2682.1 4901.5 14170 5110.7 7590.6 3815.9 3687 14736 2486.9 14495 2935.5 5539.4 13615 5156.8 7979.9 3820 3647.5 1 1 1 1 1 1 1 1 1 1 5253 2281 4623 4931 5835 5835 4217 TASELLLDR 9 Phospho (STY) _TAS(ph)ELLLDR_ T(0.344)AS(0.656)ELLLDR T(-2.81)AS(2.81)ELLLDR 0 0 1 0 Q92508 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.848022460938 2 549.265554 1096.51655 38205.9717584629 1.8372 0.0010091 208610 114.58 208610 114.58 663.847174238754 76.489 0.78576 76.489 76.156 76.941 0 68 26 3 0.968180989379902 0.00661218885941702 0.45748729871262 3.5394E-06 1 17918 161.22 105.38 2 54510000 11075 16851 10210 16984 23680 9792.1 25381 16609 17210 8752.8 10476 15919 10499 17314 23252 10238 25530 16660 17327 8626.2 1 1 1 1 1 1 1 1 1 1 5254 1592 4624 4932 5836 5836 2924 TASELLLDRR 10 Phospho (STY) _TAS(ph)ELLLDRR_ T(0.483)AS(0.517)ELLLDRR T(-0.3)AS(0.3)ELLLDRR 0 0 1 1 Q92508 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 494.934143066406 3 418.546498 1252.61767 44997.1892579975 0.46753 0.00019568 182510 76.387 182510 76.387 494.93367100965 64.566 0.72595 64.566 64.24 64.966 0 71 24 4 0.608877857329983 0.00241714017292403 0.0384380652269421 0.00019581 1 15144 115.35 86.604 2 27448000 16968 10948 18946 11698 20386 17585 20201 19226 13553 1464.8 16063 10346 18981 12060 20594 17387 20390 19266 13655 1824.3 1 1 1 1 1 1 1 1 1 1 5255 1592 4625 4933 5837 5837 2924 TASEPNLK 8 Phospho (STY) _TAS(ph)EPNLK_ T(0.208)AS(0.792)EPNLK T(-5.8)AS(5.8)EPNLK 0 0 1 0 P56524;Q9UKV0;Q9UQL6 P56524;Q9UKV0;Q9UQL6 P56524 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 466.586517333984 3 313.810952 938.411027 46199.9672443173 -0.2008 -6.3014E-05 486840 152.78 486840 152.78 466.586387049701 47.651 0.63256 47.651 47.433 48.066 -7.1054E-15 58 21 4 0.98802571011671 0.00250905483125582 0.0163439369855828 0.024971 1 11021 54.584 11.415 2 62842000 29820 19410 27775 21136 19738 24979 16424 20246 21962 1792.9 28210 18346 27981 21658 20463 24810 17029 20546 21435 2156.8 1 1 1 1 1 1 1 1 1 1 5256 730;2179;2231 4626 4934 5838 5838 1213 TASETRSEGSEYEEIPK 17 Phospho (STY) _TASETRS(ph)EGSEYEEIPK_ TAS(0.003)ET(0.297)RS(0.699)EGSEYEEIPK T(-34.8)AS(-23.16)ET(-3.72)RS(3.72)EGS(-35.16)EY(-99.52)EEIPK 0 0 1 1 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.066101074219 3 664.952647 1991.83611 32445.3789660754 2.5487 0.0016947 229760 152.78 229760 152.78 818.063743535611 53.637 0.52752 53.637 53.447 53.974 -7.1054E-15 35 17 3 0.970785922205435 0.00151100351437616 0.013933144151804 3.6196E-08 1 12509 172.8 143.66 6 14861000 12339 17530 11823 17963 13675 12994 15078 16482 18763 9088.5 11674 16562 11960 18338 13792 13307 15381 16671 18357 8939.4 1 1 1 1 1 1 1 1 1 1 5257 624 4627 4935 5839 5839 1034;1035 TASETRSEGSEYEEIPK 17 2 Phospho (STY) _TAS(ph)ETRS(ph)EGSEYEEIPK_ T(0.105)AS(0.873)ET(0.092)RS(0.901)EGS(0.028)EYEEIPK T(-9.18)AS(9.18)ET(-10.95)RS(10.95)EGS(-15.03)EY(-50.51)EEIPK 0 0 2 1 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.721740722656 3 691.60809 2071.80244 33730.5793226628 1.8202 0.0012589 220900 152.78 220900 152.78 844.717588727269 59.308 2.0201 59.308 58.581 60.601 7.1054E-15 137 69 4 0.97028066730524 0.0023530015522306 0.0428935585478457 2.011E-07 1 13866 160.36 133.63 15 14446000 13963 12750 14397 12853 10496 15914 11146 12547 13809 14501 13214 12045 14425 13240 10893 15799 11387 13153 13513 13945 1 1 1 1 1 1 1 1 1 1 5258 624 4627 4936 5840 5840 1034;1035 TASFSESR 8 Phospho (STY) _TAS(ph)FSESR_ TAS(1)FSESR T(-60.46)AS(44.49)FS(-44.49)ES(-109.39)R 0 0 1 0 P53396 P53396 P53396 ACLY ATP-citrate synthase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.27392578125 2 482.692222 963.369891 40565.2997336158 1.1109 0.00053621 237380 114.58 237380 114.58 597.273552197505 36.644 0.81199 36.644 36.316 37.128 0 83 27 5 0.988045149462725 0.0113017053228604 0.152032969967062 8.1295E-20 1 8233 263.43 149.48 4 444790000 79812 61473 75597 57478 117430 75326 117540 88490 59627 3017.3 75507 58048 76877 59547 116640 74877 118050 88343 61290 4889.1 1 1 1 1 1 1 1 1 1 1 5259 702 4628 4937 5841 5841 1180 TASFSESRADEVAPAK 16 Phospho (STY) _TAS(ph)FSESRADEVAPAK_ T(0.055)AS(0.927)FS(0.019)ESRADEVAPAK T(-12.3)AS(12.3)FS(-16.98)ES(-35.57)RADEVAPAK 0 0 1 1 P53396 P53396 P53396 ACLY ATP-citrate synthase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 735.705017089844 3 582.596246 1744.76691 36731.1041608179 1.3227 0.00077059 262230 152.77 262230 152.78 735.705434612094 53.23 0.40804 53.23 53.066 53.475 0 45 13 5 0.958933256140658 0.00218239771559733 0.0107144901993819 0.0044151 1 12406 89.42 74.492 4 35185000 52467 18073 53170 18457 43435 54494 47116 45410 20883 8146.3 49650 17075 53387 19507 44680 52915 47065 46147 21718 8721.7 1 1 1 1 1 1 1 1 1 1 5260 702 4629 4938 5842 5842 1180 TASFSESRADEVAPAKK 17 Phospho (STY) _TAS(ph)FSESRADEVAPAKK_ T(0.129)AS(0.871)FS(0.001)ESRADEVAPAKK T(-8.3)AS(8.3)FS(-30.85)ES(-46.65)RADEVAPAKK 0 0 1 2 P53396 P53396 P53396 ACLY ATP-citrate synthase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 854.794006347656 3 625.294567 1872.86187 33788.6505087261 1.0153 0.00063484 366490 229.16 366490 229.16 854.456587798377 51.689 0.3467 51.689 51.488 51.835 7.1054E-15 29 11 3 0.962189610689224 0.00168932112179128 0.00735571278814389 6.6569E-05 2 12027 123.14 108.89 4 31974000 38941 24996 37756 25882 73596 34165 69531 45252 26728 23814 36844 23618 38517 26654 72471 34059 69800 45679 28188 23471 2 2 2 2 2 2 2 2 2 2 5261 702 4630 4939 5843;5844 5843 1180 TASGSSVTSLDGTR 14 Phospho (STY) _TAS(ph)GSSVTSLDGTR_ T(0.01)AS(0.979)GS(0.01)SVTSLDGTR T(-19.8)AS(19.8)GS(-19.8)S(-50.59)VT(-77.05)S(-91.23)LDGT(-183.19)R 0 0 1 0 Q92597 Q92597 Q92597 NDRG1 Protein NDRG1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.393371582031 2 709.811585 1417.60862 34170.8161820028 1.8601 0.0013203 161430 114.58 161430 114.58 824.393205359242 45.73 0.46706 45.73 45.466 45.933 0 47 15 5 0.918103407173537 0.00229183005908555 0.0233511378333372 9.6508E-34 1 10519 325.27 273.27 7 44413000 56271 11073 56461 12479 16929 59044 17918 29951 13890 9922.9 53248 10469 56360 13476 19524 56759 18082 31469 13876 10037 1 1 1 1 1 1 1 1 1 1 5262 1603 4631 4940 5845 5845 2947 TASISSSPSEGTPTVGSYGCTPQSLPK 27 Phospho (STY) _TAS(ph)ISSSPSEGTPTVGSYGCTPQSLPK_ T(0.201)AS(0.785)IS(0.014)SSPSEGTPTVGSYGCTPQSLPK T(-5.92)AS(5.92)IS(-17.59)S(-42.32)S(-53.12)PS(-79.69)EGT(-109.32)PT(-141.46)VGS(-140.61)Y(-142.75)GCT(-146.93)PQS(-164.76)LPK 0 0 1 0 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.648315429688 4 694.815032 2775.23102 34458.3666531677 1.6482 0.0011452 164910 114.58 164910 114.58 809.647372986565 69.81 0.55525 69.81 69.546 70.102 0 98 18 7 0.97944667256489 0.00743758336537849 0.140390094007829 1.4071E-08 1 16361 173.09 150.66 12 104160000 16086 10192 17709 8683.6 10338 18195 11239 15745 9992.2 8385.8 15227 9619.9 17650 9161 10938 17798 11363 16141 9912.2 8260.6 1 1 1 1 1 1 1 1 1 1 5263 1273 4632 4941 5846 5846 2265 TASLNQRPR 9 Phospho (STY) _TAS(ph)LNQRPR_ T(0.006)AS(0.994)LNQRPR T(-21.98)AS(21.98)LNQRPR 0 0 1 1 Q8IZP0 Q8IZP0 Q8IZP0 ABI1 Abl interactor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 451.239898681641 3 374.852033 1121.53427 46660.4999255268 1.0353 0.0003881 203780 76.387 203780 76.388 451.239526179547 28.351 0.82991 28.351 27.836 28.666 3.5527E-15 63 28 5 0.968920285756324 0.00698777150354898 0.1089203311584 0.00025593 1 6297 115.33 71.027 2 39275000 31518 12283 33366 13133 17170 33304 19096 21350 13904 2683.5 29831 11608 33297 13756 18403 32337 19203 21960 13940 3021 1 1 1 1 1 1 1 1 1 1 5264 1446 4633 4942 5847 5847 2681 TASLTSAASVDGNR 14 Phospho (STY) _TAS(ph)LTSAASVDGNR_ T(0.1)AS(0.694)LT(0.204)S(0.002)AASVDGNR T(-8.4)AS(5.31)LT(-5.31)S(-25.08)AAS(-57.64)VDGNR 0 0 1 0 Q9UN36 Q9UN36 Q9UN36 NDRG2 Protein NDRG2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 829.90087890625 2 715.319577 1428.6246 34566.6983404597 2.3375 0.0016721 160180 114.58 160180 114.58 829.900601579725 49.543 0.43721 49.543 49.338 49.775 0 40 14 3 0.988323343165874 0.00171372166694805 0.0137141759412025 1.1486E-23 1 11491 285.81 257.43 5 34949000 17090 36265 18855 33287 14769 17939 15635 24785 37572 14179 16178 34241 18836 34113 15262 18779 16475 25023 36142 13925 1 1 1 1 1 1 1 1 1 1 5265 2201 4634 4943 5848 5848 3988;4813 TASPLPLRPDAPVEK 15 Phospho (STY) _TAS(ph)PLPLRPDAPVEK_ T(0.05)AS(0.95)PLPLRPDAPVEK T(-12.8)AS(12.8)PLPLRPDAPVEK 0 0 1 1 Q9HCK8 Q9HCK8 Q9HCK8 CHD8 Chromodomain-helicase-DNA-binding protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.732116699219 3 557.621955 1669.84404 37102.3931666613 1.9778 0.0011029 273980 152.78 273980 152.78 710.731216028884 67.623 0.8825 67.623 67.034 67.916 0 91 29 5 0.995069711460231 0.0127650723448316 0.250270333230885 3.6813E-06 1 15860 138.03 120.11 2 75221000 31987 24051 35998 26829 18700 37874 19813 29096 27689 8121.5 30283 22736 35807 27555 20021 37375 20330 29771 26986 8320.7 1 1 1 1 1 1 1 1 1 1 5266 1989 4635 4944 5849 5849 3614 TASPPALPK 9 Phospho (STY) _TAS(ph)PPALPK_ T(0.001)AS(0.999)PPALPK T(-30.5)AS(30.5)PPALPK 0 0 1 0 Q13029 Q13029 Q13029 PRDM2 PR domain zinc finger protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.404724121094 2 481.241351 960.468148 37784.011473056 2.0771 0.0009996 476190 229.16 476190 229.16 710.404083794836 59.726 1.2057 59.726 59.018 60.223 0 102 41 3 0.925365078269917 0.00168931278486275 0.0590130304952106 0.00050614 1 13969 111.27 75.322 2 26383000 21786 30158 22811 25708 26346 20789 22533 26097 27642 10547 20619 28464 22946 26589 26478 21143 23260 26289 27058 10536 1 1 1 1 1 1 1 1 1 1 5267 918 4636 4945 5850 5850 1514;4524 TASPPPPPK 9 2 Phospho (STY) _T(ph)AS(ph)PPPPPK_ T(1)AS(1)PPPPPK T(74.96)AS(74.96)PPPPPK 0 0 2 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.37841796875 2 526.216691 1050.41883 34839.7604149059 1.6566 0.00087171 435490 229.16 435490 229.16 755.379594404233 40.391 1.9139 40.391 39.197 41.111 0 115 65 2 0.877590231301964 0.000805692984628316 0.0105371725955274 0.022081 1 9119 74.962 52.32 1 20371000 18029 21394 18715 21315 19537 17384 18751 19392 23214 6294 17062 20209 18814 21827 19771 17637 19247 19563 22716 6375.3 1 1 1 1 1 1 1 1 1 1 5268 1436 4637 4946 5851 5851 2655;4661 TASPPPPPK 9 2 Phospho (STY) _T(ph)AS(ph)PPPPPK_ T(1)AS(1)PPPPPK T(64.64)AS(64.64)PPPPPK 0 0 2 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.923767089844 3 351.146886 1050.41883 45309.6673139419 0.61061 0.00021441 435080 152.78 435080 152.78 503.922524710286 40.523 2.2897 40.523 39.393 41.683 0 173 78 3 0.539486433505826 0.00066821932433469 0.00612655251603178 0.024406 2 9121 64.64 40.654 1 21734000 26493 28599 27511 27701 24237 26819 25189 25142 33118 3898.5 25073 27012 27605 28483 24810 26907 25812 25402 32342 4252.8 2 2 2 2 2 2 2 2 2 2 5269 1436 4637 4946 5852;5853 5852 2655;4661 TASPPPPPK 9 Phospho (STY) _TAS(ph)PPPPPK_ T(0.014)AS(0.986)PPPPPK T(-18.5)AS(18.5)PPPPPK 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 477.266296386719 3 324.491442 970.452498 45300.0975941568 0.47767 0.000155 470810 152.78 470810 152.78 477.266702022203 40.988 1.5024 40.988 40.181 41.683 7.1054E-15 173 51 5 0.826694843426121 0.00196690772554052 0.0445066401154043 0.0037752 1 9221 90.05 76.471 2 122760000 12356 15112 13343 13221 15188 15183 14441 13664 15763 2948.3 11695 14265 13401 13722 15294 15117 14772 13853 15497 3092.4 1 1 1 1 1 1 1 1 1 1 5270 1436 4637 4947 5854 5854 2655;4661 TASPPPPPKR 10 2 Phospho (STY) _T(ph)AS(ph)PPPPPKR_ T(1)AS(1)PPPPPKR T(100.55)AS(100.55)PPPPPKR 0 0 2 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 555.956176757813 3 403.18059 1206.51994 41568.9994628231 1.533 0.00061806 378930 152.78 378930 152.78 555.955820928536 32.652 2.4308 32.652 31.674 34.105 0 246 83 4 0.995253753701778 0.00601999414648667 0.0429238586205924 0.00061744 2 7326 100.55 82.416 1 47025000 32855 33610 33388 35111 34154 34020 29351 32849 35988 5312.2 31091 31759 33589 35941 34553 34144 30289 33156 35228 5762.3 2 2 2 2 2 2 2 2 2 2 5271 1436 4638 4948 5855;5856 5856 2655;4661 TASPPPPPKR 10 Phospho (STY) _TAS(ph)PPPPPKR_ T(0.003)AS(0.997)PPPPPKR T(-24.78)AS(24.78)PPPPPKR 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.301330566406 3 376.525146 1126.55361 43093.0415908334 1.345 0.00050642 405750 152.78 405750 152.78 529.300629576718 32.817 1.4566 32.817 31.852 33.309 7.1054E-15 186 49 5 0.982812252964366 0.0267649187717222 0.452983802493013 0.00014888 2 7380 121.02 101.89 2 185960000 64321 65096 62048 62001 78131 67280 76290 68868 69890 2908.7 60855 61477 62803 63934 78306 67228 77570 69105 69232 4332.7 2 2 2 2 2 2 2 2 2 2 5272 1436 4638 4949 5857;5858 5858 2655;4661 TASQGPQTDSVIQNSENIK 19 Phospho (STY) _TAS(ph)QGPQTDSVIQNSENIK_ T(0.159)AS(0.841)QGPQTDSVIQNSENIK T(-7.22)AS(7.22)QGPQT(-48.46)DS(-70.6)VIQNS(-147.52)ENIK 0 0 1 0 Q9NZN5 Q9NZN5 Q9NZN5 ARHGEF12 Rho guanine nucleotide exchange factor 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.432250976563 3 699.654712 2095.94231 33268.2438304416 2.1522 0.0015058 218360 152.78 218360 152.78 852.433117992845 63.298 0.47029 63.298 63.05 63.52 0 43 15 4 0.979221442713233 0.00169494868596622 0.0197840943465464 7.4594E-08 1 14865 162.61 134.2 5 11870000 8416.4 7842 8836.9 8665.6 12093 8935.1 10157 8402.7 8173.3 21998 7965.6 7412.8 8910.2 8851.6 12050 8978.9 10377 9111.9 8148.7 20908 1 1 1 1 1 1 1 1 1 1 5273 2085 4639 4950 5859 5859 3776 TASTDLK 7 Phospho (STY) _TAST(ph)DLK_ T(0.002)AS(0.354)T(0.644)DLK T(-26.02)AS(-2.6)T(2.6)DLK 0 0 1 0 Q6WKZ4 Q6WKZ4 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 637.344787597656 2 408.180959 814.347364 39372.3941884148 2.6877 0.0010971 561420 229.16 561430 229.16 637.343696713799 44.928 0.67052 44.928 44.624 45.294 0 68 22 4 0.992102379537604 0.00601884824309122 0.107962498250626 0.0015532 1 10302 119.62 40.682 3 87086000 70875 56603 72876 52513 20109 72593 16194 46608 62674 7610.6 67073 53447 72613 54491 23510 71556 17945 47987 59869 8245 1 1 1 1 1 1 1 1 1 1 5274 1286 4640 4951 5860 5860 4632 TASVKEGIVECNGGVAEEDEVEVILAQEPAADQEVPR 37 Phospho (STY) _T(ph)ASVKEGIVECNGGVAEEDEVEVILAQEPAADQEVPR_ T(0.553)AS(0.447)VKEGIVECNGGVAEEDEVEVILAQEPAADQEVPR T(0.92)AS(-0.92)VKEGIVECNGGVAEEDEVEVILAQEPAADQEVPR 0 0 1 1 Q9NRA8 Q9NRA8 Q9NRA8 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1120.30725097656 4 1005.22133 4016.8562 30686.8295486764 0.92761 0.00093246 113990 114.58 113990 114.58 1120.30467242974 96.483 0.43432 96.483 96.318 96.752 0 36 14 4 0.939479439409426 0.00219758690076428 0.0157066168761346 3.7379E-36 1 22447 323.78 313.15 2 6702100 458.51 585.26 911.32 1373.9 578.91 937.19 465.41 1680.2 476.2 22239 435.56 557.37 887.33 1355.5 605.52 1010.1 479.49 2326.7 469.41 20980 1 1 1 1 1 1 1 1 1 1 5275 2014 4641 4952 5861 5861 4777 TATPPGYKPGSPPSFR 16 Phospho (STY) _TATPPGYKPGS(ph)PPSFR_ T(0.001)AT(0.004)PPGYKPGS(0.728)PPS(0.267)FR T(-29.95)AT(-22.66)PPGY(-39.14)KPGS(4.36)PPS(-4.36)FR 0 0 1 1 P54259 P54259 P54259 ATN1 Atrophin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.383422851563 3 580.609938 1738.80799 36645.9941272932 1.8464 0.001072 263130 152.78 263130 152.78 733.720393821319 59.93 1.581 59.93 59.047 60.628 7.1054E-15 192 54 5 0.732731435627436 0.00168738581878002 0.0125278428347919 0.022145 1 14000 58.366 31.931 5 42547000 17564 18675 20553 17566 15752 18782 17211 19114 18644 7949.6 16631 17636 20468 18123 16291 18791 17488 19400 18335 7927.9 1 1 1 1 1 1 1 1 1 1 5276 709 4642 4953 5862 5862 1189 TATVSSPLTSPTSPSTLSLK 20 Phospho (STY) _TATVSS(ph)PLTSPTSPSTLSLK_ T(0.002)AT(0.004)VS(0.133)S(0.861)PLTSPTSPSTLSLK T(-26.45)AT(-23.78)VS(-8.1)S(8.1)PLT(-58.08)S(-77.53)PT(-99.29)S(-105.96)PS(-117.81)T(-119.88)LS(-121.83)LK 0 0 1 0 Q9UBW5 Q9UBW5 Q9UBW5 BIN2 Bridging integrator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.789611816406 3 685.680087 2054.01843 34648.2608115188 2.3848 0.0016352 222810 152.77 222810 152.78 838.455154789904 79.403 0.45092 79.403 79.193 79.644 0 54 15 5 0.940446600429895 0.00403466902864112 0.0910147055912265 1.1054E-07 1 18597 150.64 128.77 11 24589000 6365.3 3223 7408.9 3866.8 14881 7112.5 17977 8911.9 3147.6 9743.5 6027.1 3048.4 7497.7 3983.2 14689 7025.2 17744 9163.2 3734.7 9380.9 1 1 1 1 1 1 1 1 1 1 5277 2131 4643 4954 5863 5863 3834;4800 TATVSSPLTSPTSPSTLSLK 20 Phospho (STY) _TATVSSPLTSPT(ph)SPSTLSLK_ TATVSSPLTS(0.003)PT(0.893)S(0.101)PS(0.003)TLSLK T(-98.13)AT(-92.41)VS(-78.78)S(-84.82)PLT(-50.34)S(-25.41)PT(9.47)S(-9.47)PS(-24.59)T(-32.54)LS(-45.81)LK 0 0 1 0 Q9UBW5 Q9UBW5 Q9UBW5 BIN2 Bridging integrator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.790710449219 3 685.680087 2054.01843 34397.3793108402 1.9506 0.0013375 222810 152.78 222810 152.78 838.789290160568 83.682 0.60315 83.682 83.324 83.927 0 79 20 5 0.963506739232762 0.0115128231293579 0.248112739449627 3.0483E-08 1 19541 171.58 149.71 11 52889000 13223 5040.2 15717 4483.3 26951 13233 26021 17687 4938.3 19375 12522 4758.2 15818 4777.9 26654 12966 25955 18152 5766.8 18654 1 1 1 1 1 1 1 1 1 1 5278 2131 4643 4954 5864 5864 3834;4800 TAVAPSAVNLADPRTPTAPAVNLAGAR 27 Phospho (STY) _TAVAPSAVNLADPRT(ph)PTAPAVNLAGAR_ TAVAPSAVNLADPRT(0.681)PT(0.319)APAVNLAGAR T(-96.86)AVAPS(-71.01)AVNLADPRT(3.3)PT(-3.3)APAVNLAGAR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.641723632813 4 671.099721 2680.36978 36332.4536287021 1.887 0.0012664 85369 57.291 85370 57.292 728.640981715777 74.558 0.58692 74.558 74.302 74.889 0 70 19 6 0.827818768377498 0.0050898459342918 0.0648683592696825 1.2494E-07 1 17501 150.56 130.49 4 21900000 5150.9 4657.4 4519.7 4072.7 3517.7 5428.7 3716.7 3605 4482 6670.2 4871.7 4396.3 4575.5 4239.2 3632.5 5370.6 3794.7 3887.7 4389.9 6364.2 1 1 1 1 1 1 1 1 1 1 5279 2226 4644 4955 5865 5865 4835 TAVIPINGSPR 11 Phospho (STY) _TAVIPINGS(ph)PR_ TAVIPINGS(1)PR T(-125.99)AVIPINGS(125.99)PR 0 0 1 0 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.390808105469 2 602.80792 1203.60129 36308.4769043489 1.5912 0.0009592 190080 114.58 190080 114.58 717.389552519782 62.643 0.98866 62.643 62.237 63.225 0 107 33 5 0.976359668120758 0.0150950910598618 0.4292703063898 4.7748E-10 1 14681 185.99 161.21 2 322460000 88464 48848 85985 48546 50578 81037 54680 61416 49287 7163.6 83701 46143 86298 50386 53470 79544 55315 62581 48860 8166.8 1 1 1 1 1 1 1 1 1 1 5280 310 4645 4956 5866 5866 510 TCDSITPSKSSPVPVSDTQK 20 Phospho (STY) _TCDSITPSKSS(ph)PVPVSDTQK_ TCDSITPSKS(0.067)S(0.929)PVPVS(0.004)DTQK T(-86.81)CDS(-73.58)IT(-51.45)PS(-35.5)KS(-11.4)S(11.4)PVPVS(-24.14)DT(-48.49)QK 0 0 1 1 Q76FK4 Q76FK4 Q76FK4 NOL8 Nucleolar protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 968.169982910156 3 738.671374 2212.99229 32518.37130112 1.91 0.0014108 310240 229.16 310240 229.16 968.168238927775 56.492 0.29695 56.492 56.337 56.634 0 30 9 4 0.971398732366132 0.00150441539136253 0.0461494937653491 7.8056E-08 1 13211 157.9 131.9 8 11624000 12943 13211 13323 12933 6439.3 14015 7662.9 11395 12981 11351 12249 12479 13312 13314 6963.4 13988 7887 11874 12583 10952 1 1 1 1 1 1 1 1 1 1 5281 1312 4646 4957 5867 5867 2345 TCFSPNRVIGLSSDLQQVGGASAR 24 Phospho (STY) _TCFS(ph)PNRVIGLSSDLQQVGGASAR_ T(0.001)CFS(0.999)PNRVIGLSSDLQQVGGASAR T(-30.64)CFS(30.64)PNRVIGLS(-106.62)S(-130.31)DLQQVGGAS(-186.9)AR 0 0 1 1 O00303 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 944.136901855469 3 867.41441 2599.2214 31609.3892293895 1.4274 0.0012382 88063 76.387 88065 76.389 944.136321585248 89.145 0.67078 89.145 88.763 89.434 0 86 22 5 0.916482433150245 0.00487794630885433 0.0728715787084274 6.1962E-18 1 20768 234.99 212.89 5 25007000 6077.9 8908.6 5835.1 8295.9 6664.5 6188.2 8521.2 8175.7 9717.6 22311 5750.3 8412.2 5903.2 8521.5 6741.5 6363.8 8617.4 8796 9537.6 21197 1 1 1 1 1 1 1 1 1 1 5282 42 4647 4958 5868 5868 64 TCNCETEDYGEK 12 Unmodified _TCNCETEDYGEK_ 0 0 0 0 Q00839 Q00839 Q00839 HNRNPU Heterogeneous nuclear ribonucleoprotein U MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.298034667969 3 502.522151 1504.54462 39695.3835619636 2.1874 0.0010992 304020 152.78 304020 152.78 655.297379056211 39.056 0.44091 39.056 38.814 39.255 0 32 14 3 0.651838400558664 0.00104028745752331 0.0165027016445315 9.0773E-05 1 8878 99.941 84.051 1 12185000 13315 13942 14851 12845 14327 15238 14149 13886 13256 7621.7 12605 13164 14859 13294 14566 15165 14386 14211 13118 7498.1 1 1 1 1 1 1 1 1 1 1 5283 829 4648 4959 5869 5869 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 Phospho (STY) _TCNS(ph)PQNSTDSVSDIVPDSPFPGALGSDTR_ T(0.087)CNS(0.908)PQNS(0.005)TDSVSDIVPDSPFPGALGSDTR T(-10.17)CNS(10.17)PQNS(-22.94)T(-38.01)DS(-52.81)VS(-73.01)DIVPDS(-125.16)PFPGALGS(-147.18)DT(-151.1)R 0 0 1 0 Q14694 Q14694 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1144.51550292969 3 1067.79412 3200.36053 29575.2213645122 0.79082 0.00084444 71537 76.387 71538 76.388 1144.51509941788 91.207 0.80463 91.207 90.907 91.712 0 83 27 4 0.955534391712674 0.00134251321242593 0.00963004118526877 6.6822E-08 3 21236 161.85 150.07 9 42983000 6397.8 7727.6 7351.8 7951.8 5674.8 7913.5 6646.6 9538.5 8988.3 91556 6057.5 7301.2 7329.3 8150.4 5873.8 8126.6 6783.1 12264 8769.4 86432 3 3 3 3 3 3 3 3 3 3 5284 1024 4649 4960 5870;5871;5872 5871 1749 TCPSLSPTSPLNNK 14 Phospho (STY) _TCPSLSPTS(ph)PLNNK_ TCPSLSPT(0.028)S(0.972)PLNNK T(-68.09)CPS(-61.42)LS(-46.99)PT(-15.37)S(15.37)PLNNK 0 0 1 0 O75925 O75925 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.686157226563 3 532.576017 1594.70622 37300.6429741595 2.0262 0.0010791 286860 152.77 286860 152.78 685.349813417528 64.016 0.75202 64.016 63.633 64.385 0 97 25 6 0.890514939615418 0.00280391251192118 0.0268644822652552 0.00084286 1 15009 99.511 82.433 5 31231000 14194 9833.2 12344 10831 11743 12226 10971 11638 11750 9352.6 13424 9294.8 12528 11083 11942 12203 11226 11978 11560 9075.9 1 1 1 1 1 1 1 1 1 1 5285 206 4650 4961 5873 5873 359 TCSFGGFDLTNR 12 Phospho (STY) _T(ph)CSFGGFDLTNR_ T(0.5)CS(0.5)FGGFDLTNR T(0)CS(0)FGGFDLT(-77.1)NR 0 0 1 0 O94885 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 842.373718261719 2 727.792141 1453.56973 34763.831992465 1.2706 0.0009247 157440 114.58 157440 114.58 842.37294853639 79.946 0.4878 79.946 79.674 80.162 0 49 16 4 0.82530065370384 0.00146484541765531 0.0349302419966646 7.2437E-11 1 18698 197.13 177.39 3 19866000 23232 6182.8 27426 6616.4 5121.4 26433 5070.6 12188 7157.7 22210 21999 5843.2 27103 7085.5 6515.4 25474 5221 13447 6974 21196 1 1 1 1 1 1 1 1 1 1 5286 224 4651 4962 5874 5874 388;4352 TCSLPDLSK 9 Phospho (STY) _TCS(ph)LPDLSK_ T(0.003)CS(0.997)LPDLSK T(-25.65)CS(25.65)LPDLS(-42.39)K 0 0 1 0 Q96PY6 Q96PY6 Q96PY6 NEK1 Serine/threonine-protein kinase Nek1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.902770996094 2 550.738315 1099.46208 34770.7262726834 1.9605 0.0010797 416100 229.16 416100 229.16 779.90122340571 67.615 0.5589 67.615 67.357 67.916 0 54 18 4 0.931677371259775 0.00668717965167809 0.399384454787879 4.9429E-06 1 15867 155.33 127.17 3 51787000 46290 65701 53379 68490 65857 51232 67015 62741 65959 42095 43828 62081 53497 69876 66110 52346 68131 63756 65127 41089 1 1 1 1 1 1 1 1 1 1 5287 1727 4652 4963 5875 5875 3175 TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK 34 Unmodified _TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK_ 0 0 0 0 Q92804 Q92804 Q92804 TAF15 TATA-binding protein-associated factor 2N MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1021.48455810547 4 906.403949 3621.58669 29826.4166696026 1.5341 0.0013905 126410 114.58 126420 114.58 1021.23717729616 100.01 0.1101 100.01 99.947 100.06 -1.4211E-14 14 3 6 0.936269464441825 0.0110533009506383 0.147679139190329 1.9588E-12 1 23314 193.05 177.28 1 117000000 21685 27221 27280 23959 30325 23695 35091 30852 26513 57726 20540 25696 27194 24795 30653 23961 35256 32409 26525 55070 1 1 1 1 1 1 1 1 1 1 5288 1623 4653 4964 5876 5876 TDAEATDTEATET 13 Unmodified _TDAEATDTEATET_ 0 0 0 0 Q9Y3D3 Q9Y3D3 Q9Y3D3 MRPS16 28S ribosomal protein S16, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 792.361022949219 2 677.778258 1353.54196 35397.1243041886 1.8304 0.0012406 169050 114.58 169060 114.58 792.359429070625 33.87 0.40301 33.87 33.648 34.051 -7.1054E-15 30 13 3 0.983477317767935 0.00087304521677182 0.0169554741920824 5.1696E-10 1 7572 188.46 175.51 1 14693000 6920.2 9234.7 8811.1 7969.9 7433.9 8107.7 7745.4 7975.3 8879.2 6211 6555.3 8716.5 8747.3 8262.6 7630.7 8130.6 7900.2 8192.1 8713 6033 1 1 1 1 1 1 1 1 1 1 5289 2267 4654 4965 5877 5877 TDALTSSPGR 10 Phospho (STY) _TDALTSS(ph)PGR_ TDALTS(0.005)S(0.995)PGR T(-96.63)DALT(-48.18)S(-23.12)S(23.12)PGR 0 0 1 0 P49736 P49736 P49736 MCM2 DNA replication licensing factor MCM2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.319702148438 2 542.737161 1083.45977 38090.833292494 2.2878 0.0012417 211120 114.58 211120 114.58 657.318578048793 38.31 0.77831 38.31 38.035 38.814 0 78 26 4 0.955005478538404 0.00380142185325853 0.12903802272173 3.0502E-06 1 8649 147.72 89.887 4 197000000 41856 24713 38694 24365 41574 39791 38782 36832 26265 3171.3 39595 23343 39175 25286 41968 39165 39268 37155 26447 3838.6 1 1 1 1 1 1 1 1 1 1 5290 647 4655 4966 5878 5878 1073 TDASSASSFLDSDELER 17 Unmodified _TDASSASSFLDSDELER_ 0 0 0 0 Q14498 Q14498 Q14498 RBM39 RNA-binding protein 39 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.33056640625 3 610.606037 1828.79628 37028.2039550968 1.6953 0.0010352 125100 76.388 125100 76.389 686.994048757815 72.273 0.68041 72.273 71.924 72.604 0 54 22 4 0.975765260164509 0.00249487767360614 0.0149124065758816 6.5659E-06 1 16944 136.63 117.05 1 21696000 6283.8 5891.9 5316.7 5719 6519.5 6113.2 7005.4 5834.5 6333.3 7622.6 5942.4 5564.9 5424.9 5889 6551.2 6120.9 7089.2 6092.9 6277.5 7312.6 1 1 1 1 1 1 1 1 1 1 5291 1009 4656 4967 5879 5879 TDDYLDQPCYETINR 15 Unmodified _TDDYLDQPCYETINR_ 0 0 0 0 P50395 P50395 P50395 GDI2 Rab GDP dissociation inhibitor beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1066.99780273438 2 951.912355 1901.81016 30630.9004528413 2.0731 0.0019734 120370 114.58 120370 114.58 1066.99464493979 63.759 0.3997 63.759 63.52 63.92 0 46 13 4 0.978065645373033 0.00102730586611749 0.0212686830028816 2.9062E-15 1 14952 231.52 199.68 1 17426000 9302.6 11554 9629.7 12094 9367.1 10463 10310 10971 12770 10180 8803.8 10918 9676.3 12358 9536.9 10586 10516 11292 12496 9839.2 1 1 1 1 1 1 1 1 1 1 5292 661 4657 4968 5880 5880 TDGFAEAIHSPQVAGVPR 18 Phospho (STY) _TDGFAEAIHS(ph)PQVAGVPR_ TDGFAEAIHS(1)PQVAGVPR T(-58.24)DGFAEAIHS(58.24)PQVAGVPR 0 0 1 0 P12270 P12270 P12270 TPR Nucleoprotein TPR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 721.359741210938 3 644.638557 1930.89384 37182.8227805898 2.2662 0.0014609 118500 76.387 118500 76.388 721.359519332771 68.494 0.72759 68.494 68.035 68.763 0 78 24 4 0.806634173443043 0.003055402281779 0.033353473055729 4.2005E-06 1 16049 136.56 104.38 2 29709000 8294.1 12254 9248.6 12367 7591.6 9132.3 9386.3 10795 12747 10041 7852 11577 9241 12639 7830.3 9337.9 9560.3 11066 12435 9704.6 1 1 1 1 1 1 1 1 1 1 5293 370 4658 4969 5881 5881 605 TDGSISGDRQPVTVADYISR 20 Phospho (STY) _TDGSIS(ph)GDRQPVTVADYISR_ T(0.001)DGS(0.186)IS(0.813)GDRQPVTVADYISR T(-30.1)DGS(-6.41)IS(6.41)GDRQPVT(-67.05)VADY(-100.73)IS(-92.12)R 0 0 1 1 P51116 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 816.397827148438 3 739.677628 2216.01106 33420.2181165591 2.0425 0.0015108 103270 76.388 103270 76.389 816.065224324092 69.27 0.42842 69.27 69.003 69.431 1.4211E-14 32 14 3 0.570662015351663 0.00166486808360669 0.0224418424752187 6.4686E-05 1 16246 103.53 81.731 6 9707300 13901 26180 14880 25913 16827 15512 16643 19124 27138 16900 13158 24730 14950 26456 16969 16089 17237 19552 26332 16356 1 1 1 1 1 1 1 1 1 1 5294 675 4659 4970 5882 5882 1132 TDKGWSFLLGK 11 Phospho (STY) _T(ph)DKGWSFLLGK_ T(0.568)DKGWS(0.432)FLLGK T(1.19)DKGWS(-1.19)FLLGK 0 0 1 1 Q9UIQ6 Q9UIQ6 Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.717346191406 3 444.551361 1330.63225 39007.5509097675 1.7914 0.00079637 515490 229.16 515500 229.16 673.714891381035 86.577 0.60099 86.577 86.217 86.818 0 52 20 4 0.895352701539916 0.00184693110607596 0.0412760008320009 0.038902 1 20181 61.641 40.688 2 13941000 7984.6 6518.9 7304.3 4511.9 7536.9 7440 7492.5 7221.6 5946.4 8740.2 7552.9 6146.7 7396.9 4802.3 7632.6 7340.5 7586.5 7515.6 5932.9 8397.1 1 1 1 1 1 1 1 1 1 1 5295 2159 4660 4971 5883 5883 4809 TDKHSLR 7 Phospho (STY) _TDKHS(ph)LR_ T(0.002)DKHS(0.998)LR T(-26.28)DKHS(26.28)LR 0 0 1 1 O96028 O96028 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 465.591094970703 3 312.814808 935.422595 45460.4705398188 -0.0097567 -3.052E-06 488390 152.78 488390 152.78 465.591229229468 27.233 0.40771 27.233 27.002 27.41 -3.5527E-15 33 13 4 0.682441540022911 0.00370901632175373 0.0257051693533762 0.027715 1 6063 52.79 18.069 2 22207000 14832 18614 16847 19717 21270 17589 22517 20506 19796 4061.7 14043 17590 16904 20143 21339 17769 22786 20578 19649 4299.1 1 1 1 1 1 1 1 1 1 1 5296 276 4661 4972 5884 5884 462 TDLEKDIISDTSGDFR 16 Unmodified _TDLEKDIISDTSGDFR_ 0 0 0 1 P07355;A6NMY6 P07355 P07355 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.401672363281 3 604.626772 1810.85849 36006.6124092429 1.4991 0.00090639 252680 152.77 252680 152.78 757.400349017058 84.188 0.37187 84.188 83.985 84.357 0 29 12 3 0.619604357390566 0.000843649844761634 0.0135850484605771 0.00032655 1 19674 101.92 74.274 1 7720700 7071.1 13853 7501.2 14136 4762.2 7360.8 5410.2 8092.6 14439 16429 6692.7 13088 7496.2 14388 5012.1 7720.6 5723.3 8584.1 13864 15657 1 1 1 1 1 1 1 1 1 1 5297 318 4662 4973 5885 5885 TDLNPDNLQGGDDLDPNYVLSSR 23 Unmodified _TDLNPDNLQGGDDLDPNYVLSSR_ 0 0 0 0 P12277 P12277 P12277 CKB Creatine kinase B-type MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 916.784606933594 3 840.061256 2517.16194 32433.9078848735 1.7473 0.0014678 90931 76.387 90932 76.389 916.782845858353 82.562 0.56683 82.562 82.287 82.854 0 69 19 5 0.801931506064807 0.00295562629602628 0.0458824112365304 2.0806E-12 1 19293 193.77 160.41 1 40582000 2682.2 5206.8 2606 6373.5 5004.3 2936.2 6180.9 5655.9 5399.2 19058 2537.8 4925.3 2660 6417.7 4952.7 3166.5 6213.7 6142.1 5360.5 18077 1 1 1 1 1 1 1 1 1 1 5298 371 4663 4974 5886 5886 TDMDNQIVVSDYAQMDR 17 Unmodified _TDMDNQIVVSDYAQMDR_ 0 0 0 0 P50991 P50991 P50991 CCT4 T-complex protein 1 subunit delta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1115.52307128906 2 1000.93805 1999.86154 30149.4901745861 1.144 0.001145 114470 114.58 114480 114.58 1115.52124057262 72.289 0.34919 72.289 72.076 72.425 0 21 11 3 0.919378441444712 0.000473793221815311 0.00643231555524395 1.5126E-06 1 16966 151.11 117.22 1 8656200 6762.9 8741 6492 7217.9 6510.9 7415.7 8282.1 8291.1 9432.3 30405 6398.4 8248.7 6556.2 7507.3 6632.3 7492.5 8376.9 9198.8 9258 28822 1 1 1 1 1 1 1 1 1 1 5299 672 4664 4975 5887 5887 TDQGILVTNQDACALASSVSSPVK 24 Phospho (STY) _TDQGILVTNQDACALASSVSS(ph)PVK_ TDQGILVTNQDACALASS(0.002)VS(0.151)S(0.847)PVK T(-124.77)DQGILVT(-103.54)NQDACALAS(-32.29)S(-26.8)VS(-7.49)S(7.49)PVK 0 0 1 0 Q8IWI9 Q8IWI9 Q8IWI9 MGA MAX gene-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.885681152344 4 636.053013 2540.18295 36408.3478556452 1.4316 0.00091059 180140 114.58 180150 114.58 750.884426837035 84.242 0.53967 84.242 83.956 84.496 1.4211E-14 53 18 4 0.874370515505497 0.00244786261155113 0.0182319836217395 3.114E-06 1 19691 137.21 120.9 6 16598000 4447.7 4508.8 4954.6 4942.4 4315.5 4499.3 3571.4 5119.7 5380.5 10929 4210.6 4261.8 4950.6 5041.1 4408.3 4558 3720.7 5440.7 5232.2 10410 1 1 1 1 1 1 1 1 1 1 5300 1416 4665 4976 5888 5888 2581 TDSEEQDKSR 10 Phospho (STY) _TDSEEQDKS(ph)R_ TDS(0.001)EEQDKS(0.999)R T(-40.93)DS(-30.59)EEQDKS(30.59)R 0 0 1 1 Q9NRF9 Q9NRF9 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 578.277587890625 3 425.501395 1273.48235 41228.3917656847 1.6781 0.00071403 359050 152.78 359050 152.78 578.277053401232 24.74 0.70197 24.74 24.597 25.299 -3.5527E-15 47 23 3 0.974808466908439 0.0013395946833831 0.0146917067875065 0.039395 1 5555 42.568 20.695 3 8278500 4439.6 5057.7 5045.6 4598.3 2832.9 4417.3 3269.9 3473.6 5352.6 2312.9 4203.2 4775.2 5019.5 4746.5 3013.6 4428.3 3364.5 3590.5 5193.1 2258.3 1 1 1 1 1 1 1 1 1 1 5301 2015 4666 4977 5889 5889 3664 TDSPDMHEDT 10 Phospho (STY) _TDS(ph)PDMHEDT_ T(0.001)DS(0.999)PDMHEDT T(-31.16)DS(31.16)PDMHEDT(-71.46) 0 0 1 0 Q9BW61 Q9BW61 Q9BW61 DDA1 DET1- and DDB1-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.778259277344 2 614.197208 1226.37986 37680.631726739 1.7178 0.0010551 186550 114.58 186560 114.58 728.778129578033 32.127 0.76476 32.127 31.852 32.617 0 53 25 3 0.842951620912247 0.00136124080119506 0.0703307829118473 1.966E-09 1 7176 179.72 175.31 3 13534000 10715 11278 11798 10513 11527 11128 11145 11867 10823 3136.4 10143 10650 11813 10851 11708 11142 11354 11969 10693 3227.9 1 1 1 1 1 1 1 1 1 1 5302 1848 4667 4978 5890 5890 3378 TDSREDEISPPPPNPVVK 18 Phospho (STY) _TDSREDEIS(ph)PPPPNPVVK_ T(0.007)DS(0.027)REDEIS(0.967)PPPPNPVVK T(-21.56)DS(-15.6)REDEIS(15.6)PPPPNPVVK 0 0 1 1 P10644 P10644 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.827087402344 4 514.99513 2055.95142 38950.5416340029 1.3678 0.0007044 222490 114.58 222490 114.58 629.825613264583 57.95 1.4515 57.95 57.334 58.786 -7.1054E-15 207 49 6 0.919649527592102 0.00354760188351531 0.0338850123656889 8.2054E-05 2 13640 103.25 84.889 3 122640000 29799 18519 27896 17107 37905 29205 37259 29329 17525 8047.3 28190 17486 28321 17845 37847 28751 37417 29656 18129 8256.3 2 2 2 2 2 2 2 2 2 2 5303 355 4668 4979 5891;5892 5891 578 TDSSPNQAR 9 Phospho (STY) _TDSS(ph)PNQAR_ T(0.002)DS(0.204)S(0.794)PNQAR T(-25.88)DS(-5.9)S(5.9)PNQAR 0 0 1 0 P26599 P26599 P26599 PTBP1 Polypyrimidine tract-binding protein 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.792236328125 2 528.21131 1054.40807 NaN NaN NaN NaN NaN NaN NaN NaN 22.056 1 22.056 21.556 22.556 0 NaN NaN NaN 4.7143E-06 1 4972 139.32 96.041 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5304 483 4669 4980 5893 5893 798 TDSTSDGRPAWMR 13 Phospho (STY) _TDS(ph)TSDGRPAWMR_ TDS(0.494)T(0.494)S(0.013)DGRPAWMR T(-43.91)DS(0)T(0)S(-15.91)DGRPAWMR 0 0 1 1 Q14204 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.904541015625 2 780.319054 1558.62356 32966.562562057 1.1893 0.00092804 146840 114.58 146840 114.59 894.904132062117 54.438 1.2154 54.438 53.801 55.016 0 128 41 4 0.948738647556012 0.0012289425988501 0.0335298265267735 8.9583E-07 1 12593 142.08 111.47 4 43813000 21465 20365 21487 20290 15836 19542 17946 19398 20512 12560 20311 19238 21569 20825 16437 19643 18237 19842 20130 12276 1 1 1 1 1 1 1 1 1 1 5305 1001 4670 4981 5894 5894 1700;4555 TDSVIIADQTPTPTR 15 Phospho (STY) _TDSVIIADQTPTPT(ph)R_ TDSVIIADQT(0.004)PT(0.204)PT(0.793)R T(-123.02)DS(-116.43)VIIADQT(-23.43)PT(-5.9)PT(5.9)R 0 0 1 0 P17544 P17544 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.992797851563 3 565.604742 1693.7924 39031.3597650259 1.8029 0.0010197 135050 76.387 135060 76.388 642.325712040532 59.419 0.48679 59.419 59.162 59.649 0 43 16 3 0.989184708217577 0.00143194804377054 0.0273581067322632 8.7707E-07 1 13907 150.23 132.95 5 15793000 5328.3 4968.8 5646.6 5649.2 5425.1 5204.3 5179.6 5505.9 6248.5 4718 5043.1 4697.7 5664.3 5751.8 5516 5249.1 5313.5 5653.3 6120 4570 1 1 1 1 1 1 1 1 1 1 5306 418 4671 4982 5895 5895 4410 TDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPPELK 37 Phospho (STY) _TDTPPSSVPTSVISTPSTEEIQSETPGDAQGS(ph)PPELK_ TDTPPSSVPTSVISTPSTEEIQSETPGDAQGS(1)PPELK T(-176.76)DT(-171.83)PPS(-166.93)S(-166.93)VPT(-155.63)S(-149.68)VIS(-127.16)T(-120.62)PS(-99.3)T(-99.3)EEIQS(-66.36)ET(-52.2)PGDAQGS(52.2)PPELK 0 0 1 0 Q13112 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1077.28283691406 4 962.447764 3845.76195 29806.4218983677 1.7896 0.0017224 119050 114.58 119050 114.58 1077.53192785791 82.495 0.74062 82.495 82.173 82.914 0 99 25 6 0.965261159969157 0.00468718390599278 0.105509047228192 5.8923E-13 3 19312 199.53 185.36 13 33264000 8246 10021 6944 9429.6 7410.2 6877.6 7598.5 9919.9 10427 45691 7797.9 9462.7 7073.1 9677.1 7497.7 7131.9 7803 11209 10168 43253 3 3 3 3 3 3 3 3 3 3 5307 924 4672 4983 5896;5897;5898 5896 1523 TDVSNFDEEFTGEAPTLSPPR 21 Phospho (STY) _TDVSNFDEEFTGEAPTLS(ph)PPR_ TDVSNFDEEFTGEAPT(0.006)LS(0.994)PPR T(-204.99)DVS(-200.25)NFDEEFT(-122.05)GEAPT(-22.24)LS(22.24)PPR 0 0 1 0 Q16512 Q16512 Q16512 PKN1 Serine/threonine-protein kinase N1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.735595703125 3 797.012565 2388.01587 33117.0796483409 1.2222 0.0009741 95842 76.388 95844 76.389 873.734625362413 87.684 2.0911 87.684 86.561 88.652 -1.4211E-14 333 71 7 0.998290959404314 0.0816821112352636 0.548624513281621 3.4662E-23 2 20460 259.29 235.57 5 356320000 14070 14536 13050 19336 21179 20763 11949 18947 24786 130010 13310 13759 13281 19583 20894 20971 12958 22993 23912 122860 2 2 2 2 2 2 2 2 2 2 5308 1102 4673 4984 5899;5900 5900 1923 TDVSNFDEEFTGEAPTLSPPR 21 Phospho (STY) _TDVSNFDEEFTGEAPTLS(ph)PPR_ TDVSNFDEEFTGEAPT(0.038)LS(0.962)PPR T(-101.04)DVS(-90.23)NFDEEFT(-43.31)GEAPT(-13.99)LS(13.99)PPR 0 0 1 0 Q16512 Q16512 Q16512 PKN1 Serine/threonine-protein kinase N1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 873.40380859375 3 797.012565 2388.01587 NaN NaN NaN NaN NaN NaN NaN NaN 88.467 1 88.467 87.967 88.967 0 NaN NaN NaN 0.00011251 1 20639 116.65 94.275 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5309 1102 4673 4984 5901 5901 1923 TDVSNFDEEFTGEAPTLSPPRDAR 24 Phospho (STY) _TDVSNFDEEFTGEAPTLS(ph)PPRDAR_ TDVSNFDEEFTGEAPT(0.001)LS(0.999)PPRDAR T(-233.29)DVS(-224.08)NFDEEFT(-120.37)GEAPT(-28.38)LS(28.38)PPRDAR 0 0 1 1 Q16512 Q16512 Q16512 PKN1 Serine/threonine-protein kinase N1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 987.457946777344 3 911.067621 2730.18103 30724.5685663424 1.4014 0.0012768 83844 76.387 83845 76.389 987.789723657997 80.225 1.8557 80.225 79.193 81.049 0 205 63 5 0.986555328004131 0.00367915901545704 0.0629029861800897 3.205E-19 1 18712 249.88 230.01 5 67283000 4162.1 3631.9 4539 3339.3 3097.2 4536.5 5084.2 7588.7 3550.1 61932 3939.8 3429.2 4535 3465.8 3254.9 4648.6 5037.9 9359.8 3567.9 58492 1 1 1 1 1 1 1 1 1 1 5310 1102 4674 4985 5902 5902 1923 TEADAEKTFEEK 12 Unmodified _TEADAEKTFEEK_ 0 0 0 1 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.719360351563 3 466.552545 1396.6358 38143.3793310376 1.8122 0.00084547 491180 229.16 491190 229.16 695.716567245256 55.965 0.38511 55.965 55.801 56.186 0 20 12 2 0.59211481573629 0.00111171238704268 0.0140643948393808 0.023845 1 13079 72.898 53.32 1 18490000 29634 23029 27605 21810 31994 28664 33429 26156 22560 8436.1 28034 21748 27969 22578 32218 28409 33661 26588 22721 8548.9 1 1 1 1 1 1 1 1 1 1 5311 437 4675 4986 5903 5903 TEAQDLCRASPEPPGPESSSR 21 Phospho (STY) _TEAQDLCRAS(ph)PEPPGPESSSR_ TEAQDLCRAS(1)PEPPGPESSSR T(-69.46)EAQDLCRAS(69.46)PEPPGPES(-98.64)S(-102.51)S(-113.15)R 0 0 1 1 Q9C0C2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.727294921875 3 784.337166 2349.98967 33322.1941385448 1.84 0.0014432 97392 76.388 97394 76.389 861.058494634098 42.146 0.39855 42.146 41.938 42.337 -7.1054E-15 37 13 4 0.970640222454331 0.00137014544565711 0.0200470605830514 1.1833E-11 1 9628 198.03 176.05 5 14263000 9259 9675.9 9957.9 11347 11295 10651 10227 11976 11197 4979.9 8764 9150 10001 11538 11369 10733 10488 12111 11007 4966.4 1 1 1 1 1 1 1 1 1 1 5312 1885 4676 4987 5904 5904 3430 TEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 31 Unmodified _TEDSIRDYEDGMEVDTTPTVAGQFEDADVDH_ 0 0 0 1 P54105 P54105 P54105 CLNS1A Methylosome subunit pICln MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 922.912109375 4 865.11786 3456.44233 32712.6255519024 2.1449 0.0018556 66222 57.29 66224 57.292 922.908955366611 79.334 0.51088 79.334 79.106 79.617 0 54 17 5 0.959127275216382 0.00273809202874179 0.0599012025378065 2.1299E-25 1 18599 252.28 241.88 1 19038000 2763.2 3014 3962.5 4486.3 3145.9 3899 3784.8 5162.8 4201.9 14330 2619.2 2855.6 3912.3 4507.1 3250.1 3977.2 3833.3 5561.4 4128.4 13613 1 1 1 1 1 1 1 1 1 1 5313 707 4677 4988 5905 5905 TEEARPSPAPGPGTPTGTPTR 21 Phospho (STY) _TEEARPSPAPGPGT(ph)PTGTPTR_ TEEARPSPAPGPGT(0.998)PT(0.002)GTPTR T(-103.6)EEARPS(-86.4)PAPGPGT(27.91)PT(-27.91)GT(-37.94)PT(-50.04)R 0 0 1 1 Q4KMP7 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.059753417969 3 719.670585 2155.98993 35503.5261153389 1.0555 0.00075964 106140 76.388 106140 76.388 796.392274401712 34.126 0.31617 34.126 33.905 34.221 0 29 10 4 0.91507909342887 0.00042167428683433 0.00274458437528432 5.4369E-11 1 7655 186.24 163.8 6 24594000 6652.5 10887 7523.5 11051 8286.6 6057.2 9329.6 8956 11035 3468.4 6298.2 10286 7537 11256 8380.6 6337.2 9493.4 8975.7 10816 3473.2 1 1 1 1 1 1 1 1 1 1 5314 1139 4678 4989 5906 5906 4594 TEELIESPKLESSEGEIIQTVDR 23 Phospho (STY) _TEELIES(ph)PKLESSEGEIIQTVDR_ TEELIES(0.982)PKLES(0.014)S(0.003)EGEIIQTVDR T(-95.62)EELIES(18.31)PKLES(-18.31)S(-24.56)EGEIIQT(-91.31)VDR 0 0 1 1 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1047.87561035156 3 894.763427 2681.26845 30987.1898655255 1.0593 0.00094782 170740 152.77 170740 152.78 1047.87306081716 91.244 1.0062 91.244 90.818 91.824 0 117 34 5 0.959751198629964 0.00172784865452948 0.0113068513762786 9.7644E-18 1 21221 226.65 201.2 5 52315000 10402 11013 9984.9 9734.9 8988.7 10103 8614.5 12014 11609 76754 9841.4 10396 10065 10079 9178.1 10279 8868.8 14289 11328 72551 1 1 1 1 1 1 1 1 1 1 5315 1774 4679 4990 5907 5907 3273 TEESPASDEAGEK 13 Phospho (STY) _TEES(ph)PASDEAGEK_ TEES(1)PASDEAGEK T(-67.34)EES(44.19)PAS(-44.19)DEAGEK 0 0 1 0 P05114 P05114 P05114 HMGN1 Non-histone chromosomal protein HMG-14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 944.437438964844 2 715.271958 1428.52936 32846.8242261939 2.0741 0.0014835 320390 229.16 320390 229.16 944.434921363636 36.394 0.28016 36.394 36.233 36.513 0 17 9 3 0.910798621801014 0.000196647668953984 0.00646639630812913 8.7207E-16 1 8217 225.86 215.11 3 5864100 6088.5 9201 7211.7 7183.4 9885 6838.2 10622 8203.5 8207 2585.2 5765.4 8680.3 7231.3 7493.2 9881.6 6891.6 10711 8253.7 8200.3 2624.1 1 1 1 1 1 1 1 1 1 1 5316 299 4680 4991 5908 5908 494 TEFLHSQNSLSPR 13 Phospho (STY) _TEFLHSQNSLS(ph)PR_ TEFLHSQNS(0.055)LS(0.945)PR T(-84.66)EFLHS(-54.38)QNS(-12.32)LS(12.32)PR 0 0 1 0 Q96FS4 Q96FS4 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.301330566406 3 532.578638 1594.71409 40524.9386316387 0.95074 0.00050635 143430 76.387 143430 76.388 608.966272043521 55.802 0.85565 55.802 55.393 56.249 0 90 28 5 0.745328193323552 0.00273550339651228 0.0219305900389974 0.00015509 1 12970 104.76 82.891 4 68172000 13048 10705 12687 11271 14294 12845 16950 13584 12816 4326.4 12345 10116 12821 11563 14444 12822 17013 13727 12821 4388.2 1 1 1 1 1 1 1 1 1 1 5317 1678 4681 4992 5909 5909 3092 TEGDEEAEEEQEENLEASGDYK 22 Unmodified _TEGDEEAEEEQEENLEASGDYK_ 0 0 0 0 P12956 P12956 P12956 XRCC6 X-ray repair cross-complementing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 987.448059082031 3 834.33678 2499.98851 30529.2552197449 1.8424 0.0015372 183110 152.77 183110 152.78 987.445645097175 58.518 0.58464 58.518 58.291 58.876 -7.1054E-15 85 19 6 0.994874865630516 0.0156782667035675 0.236683006481214 1.5056E-23 1 13706 258.95 232.48 1 116310000 46385 42250 53882 32008 54461 56079 63297 55587 42942 8868.1 43920 39854 53849 33876 55339 55147 63449 56044 43235 9636.8 1 1 1 1 1 1 1 1 1 1 5318 372 4682 4993 5910 5910 TEIKEEEDQPSTSATQSSPAPGQSK 25 Phospho (STY) _TEIKEEEDQPSTSATQS(ph)SPAPGQSK_ TEIKEEEDQPSTSATQS(0.622)S(0.378)PAPGQSK T(-118.73)EIKEEEDQPS(-57.34)T(-48.88)S(-48.88)AT(-45.79)QS(2.16)S(-2.16)PAPGQS(-113.65)K 0 0 1 1 Q09472 Q09472 Q09472 EP300 Histone acetyltransferase p300 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 850.924194335938 4 678.80255 2711.18109 33472.0914263652 2.1199 0.001439 253200 171.87 253200 171.87 850.925239945429 46.266 0.41513 46.266 46.02 46.436 7.1054E-15 48 13 5 0.964959743824537 0.00249479152087899 0.0343146316740632 4.2107E-18 1 10672 241.94 209.51 8 22873000 12262 8879.4 12845 8796.7 11395 13105 10537 11139 9705.7 6498.3 11605 8387.6 12881 9106.4 11637 12931 10744 11446 9611.9 6376.7 1 1 1 1 1 1 1 1 1 1 5319 895 4683 4994 5911 5911 1458 TEKAPEPHVEEDDDDELDSK 20 Acetyl (Protein N-term) _(ac)TEKAPEPHVEEDDDDELDSK_ 1 0 0 1 P52566 P52566 P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 933.780944824219 3 780.671435 2338.99247 32595.4411993711 1.8091 0.0014123 195700 152.78 195700 152.78 933.781272710636 52.625 0.46416 52.625 52.378 52.842 0 71 15 6 0.990095122591651 0.00630402838753279 0.108070175893524 1.2415E-41 1 12238 145.05 115.92 1 49384000 28743 4307.1 32129 3987.8 43093 32150 43464 28454 5467.2 4999 27211 4067 32292 4566.5 43053 30931 43185 28836 7006 5365.7 1 1 1 1 1 1 1 1 1 1 5320 692 4684 4995 5912 5912 TEKEPDATPPSPR 13 Phospho (STY) _TEKEPDATPPS(ph)PR_ TEKEPDAT(0.016)PPS(0.984)PR T(-50.18)EKEPDAT(-17.88)PPS(17.88)PR 0 0 1 1 P28715 P28715 P28715 ERCC5 DNA repair protein complementing XP-G cells MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.003540039063 3 502.227494 1503.66065 38683.1789263609 1.9933 0.0010011 304190 152.77 304200 152.78 655.33610155923 36.509 0.4227 36.509 36.206 36.628 0 43 14 4 0.740213292050202 0.000693164019144021 0.00744922171774912 0.012448 1 8230 65.105 49.214 3 9787500 13005 8475.2 14110 8807.9 12487 12118 10208 10766 8221.8 4955.9 12310 8008.1 14120 9076.6 12734 11991 10446 11001 8196.7 4915.8 1 1 1 1 1 1 1 1 1 1 5321 495 4685 4996 5913 5913 821 TENLNDDEKLNNAK 14 Unmodified _TENLNDDEKLNNAK_ 0 0 0 1 P13796 P13796 P13796 LCP1 Plastin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.427429199219 3 539.928674 1616.76419 36037.4682644511 2.7301 0.0014741 424430 229.16 424430 229.16 769.42389834624 49.411 0.39965 49.411 49.228 49.628 0 38 13 4 0.643240436577896 0.00155956660239219 0.00816571040190416 0.000305 1 11467 114.63 81.219 1 14899000 47808 28309 45287 28567 28049 44303 28801 36337 30444 8924.5 45229 26744 45537 29569 29494 43621 29326 37026 29970 9244.5 1 1 1 1 1 1 1 1 1 1 5322 380 4686 4997 5914 5914 TEPAALSSQEAEEVEEEGAPDYENLQELN 29 Phospho (STY) _TEPAALSS(ph)QEAEEVEEEGAPDYENLQELN_ TEPAALS(0.154)S(0.845)QEAEEVEEEGAPDYENLQELN T(-32.56)EPAALS(-7.39)S(7.39)QEAEEVEEEGAPDY(-130.01)ENLQELN 0 0 1 0 O43561 O43561 O43561 LAT Linker for activation of T-cells family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1167.85522460938 3 1091.12771 3270.3613 29643.3752444183 1.7598 0.0019202 70007 76.387 70009 76.389 1167.84864019719 89.868 0.52482 89.868 89.576 90.101 0 62 17 4 0.954397711568289 0.00180007799030134 0.0127391203647055 1.6678E-07 1 20910 145.95 138.99 4 21875000 1059.3 1037.6 1097.4 1129.6 2632 1530.3 3513.9 1800.7 1705.2 18871 1002.5 980.67 1123.3 1160.6 2591.1 1554.9 3485 2364.3 1759.2 17811 1 1 1 1 1 1 1 1 1 1 5323 117 4687 4998 5915 5915 205 TEPAALSSQEAEEVEEEGAPDYENLQELN 29 Phospho (STY) _TEPAALSS(ph)QEAEEVEEEGAPDYENLQELN_ T(0.005)EPAALS(0.19)S(0.805)QEAEEVEEEGAPDYENLQELN T(-22.51)EPAALS(-6.27)S(6.27)QEAEEVEEEGAPDY(-42.22)ENLQELN 0 0 1 0 O43561 O43561 O43561 LAT Linker for activation of T-cells family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.1396484375 4 818.597602 3270.3613 34361.8072451208 1.8582 0.0015211 69987 57.291 69989 57.293 876.138578445813 89.844 0.38006 89.844 89.633 90.014 -1.4211E-14 27 12 3 0.741292921139074 0.00112967551245338 0.0274684583727107 0.021179 1 20963 58.16 44.429 4 7764800 2770.7 2066.6 1663.3 3062.3 3969 2746 3642.6 3296.2 2665 18121 2617.6 1957.9 1766.1 3078.4 3886.1 2807.6 3696.8 3831 2671 17140 1 1 1 1 1 1 1 1 1 1 5324 117 4687 4998 5916 5916 205 TEPGASPEDPWVK 13 Acetyl (Protein N-term),Phospho (STY) _(ac)TEPGAS(ph)PEDPWVK_ T(0.006)EPGAS(0.994)PEDPWVK T(-21.89)EPGAS(21.89)PEDPWVK 1 0 1 0 Q9UH92 Q9UH92 Q9UH92 MLX Max-like protein X MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.415771484375 2 767.826704 1533.63885 35172.2517965798 1.5388 0.0011816 149230 114.58 149230 114.58 882.407828283194 79.786 0.60043 79.786 79.418 80.018 0 34 20 3 1 0.000233717010452414 0.00683658844566971 0.0069831 1 18703 81.647 51.588 2 5368700 6137.6 6613.4 4938.3 6027.8 5959.3 6197.5 6779 6148.1 6559.1 33041 5803.2 6244.1 5055.6 6227.7 5998.6 6266.1 6855.1 7164.5 6481.2 31254 1 1 1 1 1 1 1 1 1 1 5325 2142 4688 4999 5917 5917 3854 TEPTSPTPSAFK 12 Phospho (STY) _TEPTS(ph)PTPSAFK_ T(0.002)EPT(0.019)S(0.923)PT(0.039)PS(0.016)AFK T(-26.91)EPT(-16.8)S(13.7)PT(-13.7)PS(-17.62)AFK 0 0 1 0 Q86XN7 Q86XN7 Q86XN7 PROSER1 Proline and serine-rich protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.46484375 2 671.799958 1341.58536 34247.1991158054 2.0424 0.0013721 341120 229.16 341120 229.16 901.463635479886 59.507 0.42884 59.507 59.307 59.736 0 33 14 3 0.957329501049252 0.000840512627796759 0.0423299714394552 0.014432 1 13941 75.479 36.46 5 9944400 5055.9 15427 5757.7 14699 11833 6903.5 11499 11185 17750 13695 4786.8 14569 5831.1 15011 11651 7347.1 11893 11466 17249 13154 1 1 1 1 1 1 1 1 1 1 5326 1397 4689 5000 5918 5918 2538 TEQEEDEELLTESSK 15 Unmodified _TEQEEDEELLTESSK_ 0 0 0 0 O60264 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.376281738281 3 589.598659 1765.77415 35951.9517418103 2.1238 0.0012522 259120 152.78 259120 152.78 742.373750241218 62.88 0.46572 62.88 62.615 63.081 0 45 15 4 0.718554699057956 0.00122513149106117 0.01156727405168 4.8165E-07 1 14769 156.17 129.14 1 16257000 11364 11174 9333.4 11595 10147 11668 9266.4 11415 11093 7723.4 10746 10559 9523.2 11881 10238 11704 9524.7 11693 10868 7536.7 1 1 1 1 1 1 1 1 1 1 5327 138 4690 5001 5919 5919 TESEVPPRPASPK 13 Phospho (STY) _TESEVPPRPAS(ph)PK_ TESEVPPRPAS(1)PK T(-57.36)ES(-47.13)EVPPRPAS(47.13)PK 0 0 1 1 Q9Y3L3 Q9Y3L3 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 645.346313476563 3 492.236101 1473.68647 39068.0147256648 1.7103 0.00084187 310370 152.78 310370 152.78 645.011507510972 40.436 3.6539 40.436 39.112 42.766 0 314 126 3 0.930289686696752 0.00331667271260416 0.0121427678763308 0.0032652 3 9311 92.211 64.562 3 33628000 56494 43891 55624 42747 80089 55133 85080 58510 45439 11544 53454 41456 56369 44160 79863 54773 85279 58907 46516 12224 3 3 3 3 3 3 3 3 3 3 5328 2268 4691 5002 5920;5921;5922 5921 4195 TESGEETDLISPPQEEVK 18 Phospho (STY) _TES(ph)GEETDLISPPQEEVK_ T(0.182)ES(0.818)GEETDLISPPQEEVK T(-6.53)ES(6.53)GEET(-35.35)DLIS(-108.62)PPQEEVK 0 0 1 0 O43493 O43493 O43493 TGOLN2 Trans-Golgi network integral membrane protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.07958984375 3 689.971707 2066.89329 34296.8718072957 2.1359 0.0014737 221420 152.77 221420 152.78 843.078619396855 71.768 0.93682 71.768 71.461 72.398 0 48 31 2 0.548429043432492 0.0012555991565531 0.0172221859949024 1.4549E-07 1 16858 154.72 130.92 4 10111000 10258 5996.3 12675 5959.4 5723.7 10485 6957.1 8531.6 5958 27606 9715.4 5664.2 12541 6193.9 6235.4 10335 6995.1 9465.3 5921.1 26192 1 1 1 1 1 1 1 1 1 1 5329 115 4692 5003 5923 5923 201 TESPATAAETASEELDNR 18 Phospho (STY) _T(ph)ESPATAAETASEELDNR_ T(0.569)ES(0.43)PATAAETASEELDNR T(1.22)ES(-1.22)PAT(-37.76)AAET(-112.89)AS(-126.3)EELDNR 0 0 1 0 Q9NTJ3 Q9NTJ3 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.333435058594 3 657.944151 1970.81062 36721.9194630328 1.7062 0.0011226 116100 76.387 116100 76.388 734.665654007217 71.046 1.3628 71.046 70.417 71.779 0 178 46 5 0.656561478416012 0.00182360677214998 0.0248588467004571 2.5685E-07 2 16589 152.13 132.8 5 48567000 18873 18075 18003 20446 18087 17638 18673 20851 20395 19825 17855 17088 18180 20803 18359 17883 19027 21388 20050 19151 2 2 2 2 2 2 2 2 2 2 5330 2032 4693 5004 5924;5925 5924 4783 TESSTEGKEQEEK 13 Unmodified _TESSTEGKEQEEK_ 0 0 0 1 P43243 P43243 P43243 MATR3 Matrin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.055786132813 3 494.558247 1480.65291 37380.5435912526 2.738 0.0013541 463370 229.16 463370 229.16 724.055754383629 31.155 0.32828 31.155 31.002 31.33 0 26 10 3 0.977896486611769 0.00164294004345397 0.0533900784701798 0.019019 1 6962 79.771 50.965 1 9581600 14050 15504 15535 13855 13943 15367 14973 15286 17880 3399.2 13300 14637 15540 14350 14260 15341 15272 15438 17519 3554.6 1 1 1 1 1 1 1 1 1 1 5331 595 4694 5005 5926 5926 TESVPSDINNPVDR 14 Phospho (STY) _TES(ph)VPSDINNPVDR_ T(0.001)ES(0.969)VPS(0.03)DINNPVDR T(-29.97)ES(15.11)VPS(-15.11)DINNPVDR 0 0 1 0 Q8IVT5 Q8IVT5 Q8IVT5 KSR1 Kinase suppressor of Ras 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 926.938720703125 2 811.856524 1621.69849 37794.6248948032 1.1116 0.00090243 141130 114.58 141130 114.58 926.437040523396 54.471 0.46344 54.471 54.119 54.582 0 18 15 2 0.894870629168981 0.000153254765052169 0.00165364400985734 8.1479E-07 1 12708 155.43 118.74 3 15443000 8956.4 10303 9491.9 10915 12969 9443.4 13357 12330 12497 12204 8477 9736.7 9570.3 11146 12961 9590.4 13554 12624 12368 11777 1 1 1 1 1 1 1 1 1 1 5332 1412 4695 5006 5927 5927 2574 TETISFGSVSPGGVK 15 Phospho (STY) _TETISFGSVS(ph)PGGVK_ TETISFGS(0.001)VS(0.999)PGGVK T(-95.36)ET(-89.17)IS(-68.52)FGS(-29.1)VS(29.1)PGGVK 0 0 1 0 Q9Y2J2 Q9Y2J2 Q9Y2J2 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.687866210938 3 515.911395 1544.71235 38738.243830593 2.023 0.0010437 296130 152.78 296130 152.78 668.686682513631 78.77 0.55674 78.77 78.521 79.078 0 62 18 4 0.851042020830254 0.00396057550088365 0.0586173387345675 3.6828E-07 1 18477 158.98 135.56 5 42093000 26524 12253 25108 10772 8330.7 27646 8458.5 15299 11512 5048.4 25093 11566 25158 11422 9449.3 26812 8687.6 15977 11229 5107.7 1 1 1 1 1 1 1 1 1 1 5333 2248 4696 5007 5928 5928 4154 TETPPPLASLNVSK 14 Phospho (STY) _T(ph)ETPPPLASLNVSK_ T(0.5)ET(0.5)PPPLASLNVSK T(0)ET(0)PPPLAS(-104.09)LNVS(-163.45)K 0 0 1 0 Q3MHD2 Q3MHD2 Q3MHD2 LSM12 Protein LSM12 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.700012207031 3 511.923523 1532.74874 38477.9429198707 2.1659 0.0011088 298430 152.78 298440 152.78 664.698765924501 81.509 1.8862 81.509 80.343 82.23 0 215 64 5 0.901986087823689 0.00157200540815493 0.0283960435542576 2.7173E-10 1 18888 181.86 152.17 4 105640000 6356.3 6096.8 6257.3 7182 5972.9 6496.5 6911.6 6245.2 6773.4 5448.7 6014.3 5765.6 6304.7 7297 6091.2 6549.4 6986.5 6438.3 6689.1 5275.1 1 1 1 1 1 1 1 1 1 1 5334 1129 4697 5008 5929 5929 4592;4593 TETPPPLASLNVSK 14 Phospho (STY) _TET(ph)PPPLASLNVSK_ T(0.003)ET(0.997)PPPLASLNVSK T(-24.64)ET(24.64)PPPLAS(-100.46)LNVS(-149.21)K 0 0 1 0 Q3MHD2 Q3MHD2 Q3MHD2 LSM12 Protein LSM12 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 996.546264648438 2 767.381646 1532.74874 32001.010152103 2.1771 0.0016706 298630 229.16 298630 229.16 996.543709560251 81.446 1.2737 81.446 80.668 81.941 0 126 43 4 0.986134024644438 0.00218666066398283 0.0389867824092663 1.0779E-22 1 19075 271.41 232.54 4 27152000 15111 17389 15911 16610 13504 15717 13191 16451 19553 20244 14302 16422 15945 17088 13847 15842 13616 17083 19023 19443 1 1 1 1 1 1 1 1 1 1 5335 1129 4697 5008 5930 5930 4592;4593 TETQEKNPLPSK 12 Phospho (STY) _TET(ph)QEKNPLPSK_ TET(1)QEKNPLPSK T(-34.51)ET(34.51)QEKNPLPS(-66.4)K 0 0 1 1 P62328 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.062194824219 3 484.564106 1450.67049 37883.3569593037 1.1918 0.00057752 472930 229.16 472930 229.16 713.727322832275 51.762 0.55197 51.762 51.459 52.011 0 50 18 4 0.981525959469506 0.00232926790565602 0.00841766304577184 0.00027948 1 12026 112.01 85.6 3 68859000 25934 24943 26459 22680 80496 26753 87550 46460 26513 15964 24543 23550 27288 23490 78539 26911 87108 46320 28749 16107 1 1 1 1 1 1 1 1 1 1 5336 763 4698 5009 5931 5931 4491 TEVSETARPSSPDTR 15 Phospho (STY) _TEVSETARPSS(ph)PDTR_ TEVSETARPS(0.107)S(0.892)PDT(0.001)R T(-67.91)EVS(-54.36)ET(-40)ARPS(-9.19)S(9.19)PDT(-31.3)R 0 0 1 1 O75132 O75132 O75132 ZBED4 Zinc finger BED domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 648.309936523438 3 571.587751 1711.74142 38993.1396703631 2.0281 0.0011592 133640 76.387 133640 76.388 647.975155165537 30.022 0.50482 30.022 29.778 30.283 -3.5527E-15 46 16 4 0.931814830345562 0.0040547322711112 0.0854875964072966 7.4196E-05 1 6702 122.01 95.477 6 22311000 12458 10901 15049 9107 12749 12890 14180 12206 11207 2710.2 11798 10288 14979 9521.1 13091 12748 14284 12352 11184 2834.5 1 1 1 1 1 1 1 1 1 1 5337 169 4699 5010 5932 5932 294 TEVSPVPR 8 Phospho (STY) _TEVS(ph)PVPR_ TEVS(1)PVPR T(-37.13)EVS(37.13)PVPR 0 0 1 0 O43159 O43159 O43159 RRP8 Ribosomal RNA-processing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.310729980469 2 482.728607 963.442662 39691.038514693 1.0303 0.00049733 237360 114.58 237360 114.58 597.31037971967 40.882 0.4809 40.882 40.658 41.139 0 40 16 3 0.991356620270132 0.00343439851518026 0.0315600260170341 0.0030194 1 9323 98.73 68.012 2 50243000 27246 41977 27114 40873 22591 25288 19128 29645 46466 3743.9 25781 39648 27248 41784 23169 26105 20386 29680 44689 4211.4 1 1 1 1 1 1 1 1 1 1 5338 98 4700 5011 5933 5933 165 TEWETAAPAVAETPDIK 17 Acetyl (Protein N-term) _(ac)TEWETAAPAVAETPDIK_ 1 0 0 0 P46782 P46782 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1050.54064941406 2 935.957088 1869.89962 30270.807890188 1.3429 0.0012569 122420 114.58 122420 114.58 1051.04043928346 86.787 0.63748 86.787 86.476 87.113 0 82 21 5 0.991399868530663 0.0021362314503465 0.0918499059198731 6.6733E-16 1 20208 162.6 133.86 1 167470000 8341.1 7985.3 8475.2 7413.8 8282.3 7947.7 8753.1 9289.7 9308.8 23679 7893.4 7540.2 8524.9 7655.7 8423.5 8003.9 8902.5 9979.8 9161.4 22512 1 1 1 1 1 1 1 1 1 1 5339 614 4701 5012 5934 5934 TEWLDGK 7 Unmodified _TEWLDGK_ 0 0 0 0 P62937;Q9Y536;F5H284;A2BFH1 P62937 P62937 PPIA;PPIAL4A;PPIAL4D;PPIAL4G Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4G MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.875366210938 2 424.711068 847.407583 39453.9087180337 2.1302 0.0009047 539570 229.16 539580 229.16 653.874024402354 69.656 0.53037 69.656 69.374 69.904 -1.4211E-14 42 17 3 0.933485176868149 0.00209609667271454 0.0865491830381515 0.009807 1 16324 100.19 41.207 1 17066000 18339 15240 18534 15877 17367 17776 19042 17070 15664 9156.8 17354 14401 18640 16293 17713 17741 19210 17426 15599 9017.3 1 1 1 1 1 1 1 1 1 1 5340 774 4702 5013 5935 5935 TFKESPK 7 Phospho (STY) _TFKES(ph)PK_ T(0.001)FKES(0.999)PK T(-32.65)FKES(32.65)PK 0 0 1 1 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 535.3076171875 3 306.144043 915.410299 44096.2353843291 -0.18937 -5.7974E-05 748550 229.16 748550 229.16 535.307918045208 47.208 0.42646 47.208 46.946 47.373 0 40 16 4 0.765801376158956 0.0028251601121918 0.10100729162025 0.012883 1 10885 68.069 23.759 2 86130000 28964 26365 31437 25906 11071 30119 11454 25478 28274 2782.4 27417 24904 31265 26696 12459 29949 12101 25820 27184 3209.6 1 1 1 1 1 1 1 1 1 1 5341 603 4703 5014 5936 5936 994 TFLDKDAQRLSPIPEEVPK 19 Phospho (STY) _TFLDKDAQRLS(ph)PIPEEVPK_ TFLDKDAQRLS(1)PIPEEVPK T(-61.82)FLDKDAQRLS(61.82)PIPEEVPK 0 0 1 2 Q96T23 Q96T23 Q96T23 RSF1 Remodeling and spacing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.662475585938 4 566.539705 2262.12971 36548.7376291963 2.0263 0.001148 303370 171.87 303370 171.87 738.661051733064 80.347 0.6485 80.347 80.075 80.723 0 79 21 5 0.957940047712878 0.00656002481406155 0.034732045929776 9.5381E-08 1 18807 158.97 133.56 2 36056000 11606 15471 12380 16673 24005 10578 22849 16180 17756 6871.9 10985 14622 12561 16948 23653 10958 23175 16219 17736 6845.2 1 1 1 1 1 1 1 1 1 1 5342 1754 4704 5015 5937 5937 3215 TFLEGDWTSPSK 12 Phospho (STY) _TFLEGDWTS(ph)PSK_ TFLEGDWT(0.038)S(0.962)PSK T(-70.25)FLEGDWT(-14.04)S(14.04)PS(-33.73)K 0 0 1 0 Q8NDT2 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.986511230469 3 483.209552 1446.60683 39122.3907985019 1.9166 0.00092612 316170 152.78 316170 152.78 636.31879324426 89.622 0.77887 89.622 89.263 90.042 -1.4211E-14 75 26 4 0.920116371550819 0.00076270198213829 0.0042230372854804 0.0032798 1 20857 91.812 69.279 4 40484000 7569.9 8200 9022.9 6676 6497.7 8105 7469.4 8215.7 6858.1 7486.1 7168.5 7737.6 8972.9 6970.7 6756.1 8075.8 7539.8 8462.2 6792.8 7239.2 1 1 1 1 1 1 1 1 1 1 5343 1508 4705 5016 5938 5938 2772 TFLESKEELSHSPEPCTK 18 Phospho (STY) _TFLESKEELSHS(ph)PEPCTK_ TFLESKEELS(0.001)HS(0.999)PEPCTK T(-47.81)FLES(-48.92)KEELS(-30.05)HS(30.05)PEPCT(-57.3)K 0 0 1 1 P41229 P41229 P41229 KDM5C Lysine-specific demethylase 5C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.621887207031 4 550.497343 2197.96027 36429.1522232336 2.2068 0.0012148 312210 171.87 312210 171.87 722.620243022366 67.91 0.62722 67.91 67.645 68.272 0 58 20 4 0.938151619334099 0.00265396758073764 0.0317882235652393 6.2957E-05 1 15940 111.53 91.456 5 13852000 6907.3 10047 7930.8 9073.4 9998.4 7122.5 10819 8865.3 8332.4 5998.4 6539.9 9485.8 7953.9 9344.4 10034 7259.5 10905 9005.7 8327 5853.4 1 1 1 1 1 1 1 1 1 1 5344 579 4706 5017 5939 5939 931 TFNGSIELCR 10 Phospho (STY) _TFNGS(ph)IELCR_ T(0.009)FNGS(0.991)IELCR T(-20.21)FNGS(20.21)IELCR 0 0 1 0 Q92974 Q92974 Q92974 ARHGEF2 Rho guanine nucleotide exchange factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.355773925781 2 638.77322 1275.53189 35927.3322086907 1.8568 0.0011861 179380 114.58 179380 114.58 753.354109763526 67.942 0.71394 67.942 67.645 68.359 0 82 23 5 0.903965526541306 0.00231734519498031 0.0472339068803559 0.00034835 1 15918 109.84 87.118 2 51312000 12832 12372 14330 12905 25470 13827 28187 19264 12527 47865 12148 11690 14485 13233 25213 13977 28133 20555 13025 45516 1 1 1 1 1 1 1 1 1 1 5345 1636 4707 5018 5940 5940 3028 TFNTSTGGLLLPSDTKR 17 Phospho (STY) _TFNT(ph)STGGLLLPSDTKR_ T(0.001)FNT(0.457)S(0.457)T(0.085)GGLLLPSDTKR T(-29.21)FNT(0)S(0)T(-7.29)GGLLLPS(-84.38)DT(-89.46)KR 0 0 1 1 P12956 P12956 P12956 XRCC6 X-ray repair cross-complementing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.091613769531 3 629.978579 1886.91391 36763.6144374009 2.0895 0.0013163 242510 152.78 242510 152.78 783.088512848212 79.443 0.42231 79.443 79.222 79.644 -1.4211E-14 44 14 4 0.898319905072321 0.00208379759861649 0.0588879516280544 0.00023963 1 18618 112.45 83.871 6 10680000 8620.9 8795.6 10347 7257.2 9673.4 9626.3 9875.7 9881.4 9683.3 13283 8164 8300.2 10311 7583.4 9859 9571.3 10038 10302 9562.7 12737 1 1 1 1 1 1 1 1 1 1 5346 372 4708 5019 5941 5941 608;4392 TFPLAHSPQAECEDQLDAQER 21 Phospho (STY) _TFPLAHS(ph)PQAECEDQLDAQER_ TFPLAHS(1)PQAECEDQLDAQER T(-64.74)FPLAHS(64.74)PQAECEDQLDAQER 0 0 1 0 Q7Z3B3 Q7Z3B3 Q7Z3B3 KANSL1 KAT8 regulatory NSL complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 918.08251953125 3 841.35997 2521.05808 32471.6452203094 1.7175 0.001445 90791 76.388 90792 76.389 918.08189992532 64.987 0.57832 64.987 64.765 65.343 0 74 19 5 0.994677781725742 0.00408636486571841 0.0370604185218693 7.9934E-32 1 15260 304.86 285.17 2 31440000 6414.1 7339.8 6521.7 7672.5 6877 8005.4 6639 8119.1 8023.3 22524 6069.8 6935.6 6564.7 7862.9 6955.7 8053.2 6807.2 8818.3 7857.9 21397 1 1 1 1 1 1 1 1 1 1 5347 1330 4709 5020 5942 5942 2396 TFQQIQEEEDDDYPGSYSPQDPSAGPLLTEELIK 34 Phospho (STY) _TFQQIQEEEDDDYPGSYS(ph)PQDPSAGPLLTEELIK_ TFQQIQEEEDDDY(0.006)PGS(0.166)Y(0.14)S(0.687)PQDPSAGPLLTEELIK T(-87.62)FQQIQEEEDDDY(-20.43)PGS(-6.17)Y(-6.91)S(6.17)PQDPS(-31.54)AGPLLT(-63.93)EELIK 0 0 1 0 Q9NQG5 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1096.02087402344 4 980.688485 3918.72484 29669.8821769099 1.6129 0.0015818 116840 114.58 116840 114.58 1095.77122613397 100.67 0.33539 100.67 100.51 100.84 0 45 11 8 0.985469970301857 0.025174495823247 0.302832928676295 1.433E-06 1 23559 137.25 119.69 7 419720000 8568.1 13468 9210 10754 5991.2 12128 6579.8 17197 13671 583120 8110 12707 9198.7 11229 6285 13257 6863.6 34624 13188 549480 1 1 1 1 1 1 1 1 1 1 5348 2004 4710 5021 5943 5943 3639 TFSATVR 7 Phospho (STY) _TFS(ph)ATVR_ T(0.049)FS(0.614)AT(0.337)VR T(-10.94)FS(2.61)AT(-2.61)VR 0 0 1 0 Q9Y2V2 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 545.77783203125 2 431.196943 860.379333 41830.0076704583 0.68501 0.00029537 265730 114.58 265730 114.58 545.778294731952 51.599 1.0977 51.599 51.225 52.323 0 111 37 5 0.958095570189888 0.00626805945651129 0.0838046156703963 0.014379 1 11954 80.755 44.36 3 910150000 43801 32788 41000 31357 19065 39660 21254 30933 31527 4812.8 41436 30966 41181 32417 20683 39282 21811 31511 30672 5247.8 1 1 1 1 1 1 1 1 1 1 5349 2256 4711 5022 5944 5944 4168 TFSLTEVR 8 Phospho (STY) _T(ph)FSLTEVR_ T(0.943)FS(0.056)LTEVR T(12.23)FS(-12.23)LT(-41.3)EVR 0 0 1 0 O95239 O95239 O95239 KIF4A Chromosome-associated kinesin KIF4A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.323364257813 2 516.741715 1031.46888 38798.635654613 2.0706 0.00107 221740 114.58 221740 114.58 631.322989066329 74.461 0.8196 74.461 74.07 74.889 -1.4211E-14 80 27 4 0.787090848981825 0.000944906268440188 0.050648667772055 0.0016146 1 17430 108.26 75.512 3 75823000 9004.7 9114.4 8618 8014.4 9925.2 9766.4 9406.4 9274.5 9045.2 8030.8 8519.3 8603.8 8715.1 8324.2 9987.3 9720.1 9589.9 9564 8940.2 7776.6 1 1 1 1 1 1 1 1 1 1 5350 237 4712 5023 5945 5945 4358 TFWSPELK 8 Phospho (STY) _TFWS(ph)PELK_ T(0.006)FWS(0.994)PELK T(-21.99)FWS(21.99)PELK 0 0 1 0 Q8IUD2;O15083 Q8IUD2 Q8IUD2 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.911315917969 2 544.246633 1086.47871 36270.1493752432 2.4897 0.001355 421060 229.16 421070 229.16 773.410328179447 93.98 0.52178 93.98 93.702 94.224 0 41 17 3 0.878108963170064 0.0013171263494946 0.09038971350193 0.020918 1 21870 66.19 30.538 2 10475000 7961 9570.4 9364.4 10616 10532 9808.3 10853 10926 10274 23465 7538.4 9046.7 9363.7 10823 10623 9925.6 11016 11623 10162 22348 1 1 1 1 1 1 1 1 1 1 5351 1408 4713 5024 5946 5946 2565 TFWSPELKK 9 Phospho (STY) _TFWS(ph)PELKK_ TFWS(1)PELKK T(-38.01)FWS(38.01)PELKK 0 0 1 1 Q8IUD2;O15083 Q8IUD2 Q8IUD2 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.028503417969 3 405.865168 1214.57368 40203.630165354 2.2978 0.0009326 564630 229.16 564630 229.16 635.027994777904 84.611 0.45498 84.611 84.329 84.784 0 38 15 3 0.952505618294756 0.00215721953824445 0.0390243443829036 0.0046303 1 19740 89.301 59.757 2 9958000 7107.1 8358.3 7713.4 7996.6 10759 8318.4 11600 8118.2 8659.3 8916.6 6727.4 7893.7 7771 8237.9 10748 8337.9 11687 8419.6 8668.8 8584 1 1 1 1 1 1 1 1 1 1 5352 1408 4714 5025 5947 5947 2565 TGADTTAAGPLFQQRPYPSPGAVLR 25 Phospho (STY) _TGADTTAAGPLFQQRPYPS(ph)PGAVLR_ TGADTTAAGPLFQQRPYPS(1)PGAVLR T(-63.79)GADT(-59.94)T(-54.36)AAGPLFQQRPY(-48.69)PS(48.69)PGAVLR 0 0 1 1 O60828 O60828 O60828 PQBP1 Polyglutamine-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 961.162109375 3 884.437431 2650.29047 32637.0166999177 1.3961 0.0012348 86370 76.389 86371 76.39 961.496653727678 84.237 1.0223 84.237 83.67 84.692 0 119 35 5 0.712696374515001 0.00411085346524416 0.0438741509611158 0.0037355 1 19652 91.779 69.126 5 27541000 8103.7 12990 9457.4 12943 7314.9 9059 7409.8 10982 12947 19081 7673.3 12271 9419.2 13230 7556.2 9313.7 7689.6 11516 12540 18221 1 1 1 1 1 1 1 1 1 1 5353 158 4715 5026 5948 5948 269 TGALVLSR 8 Phospho (STY) _TGALVLS(ph)R_ TGALVLS(1)R T(-55.69)GALVLS(55.69)R 0 0 1 0 P16150 P16150 P16150 SPN Leukosialin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 563.315246582031 2 448.733693 895.452832 42032.5083432581 1.4651 0.00065746 255340 114.58 255340 114.58 563.314993074641 56.414 0.91776 56.414 56.067 56.985 -7.1054E-15 82 30 4 0.984517021268425 0.0046743589752159 0.139391662349017 0.033318 1 13144 58.63 43.765 2 121370000 15063 30077 15399 30551 38036 14925 36366 27258 31568 8542.5 14254 28415 15761 31089 37235 15828 36966 27121 31351 8674.7 1 1 1 1 1 1 1 1 1 1 5354 403 4716 5027 5949 5949 644 TGDEKDVSV 9 Phospho (STY) _TGDEKDVS(ph)V_ TGDEKDVS(1)V T(-38.1)GDEKDVS(38.1)V 0 0 1 1 Q16543 Q16543 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.372802734375 2 515.210444 1028.40634 35438.3398734667 1.3609 0.00070115 444790 229.16 444790 229.16 744.372466207179 48.375 0.44139 48.375 48.123 48.564 0 35 14 3 0.990268829821195 0.00178413329350314 0.0409877734207241 0.019572 1 11202 62.89 15.629 2 35223000 35340 48862 36297 49618 27167 35324 31148 37609 51286 12642 33444 46163 36390 50671 28184 36097 32066 38017 49750 12774 1 1 1 1 1 1 1 1 1 1 5355 1106 4717 5028 5950 5950 1927 TGDLGIPPNPEDRSPSPEPIYNSEGK 26 2 Phospho (STY) _TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGK_ TGDLGIPPNPEDRS(0.999)PS(0.999)PEPIY(0.001)NSEGK T(-53.05)GDLGIPPNPEDRS(33.29)PS(33.29)PEPIY(-33.29)NS(-44.34)EGK 0 0 2 1 Q15637 Q15637 Q15637 SF1 Splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.151184082031 4 732.319046 2925.24708 34059.908803076 2.1553 0.0015783 156460 114.58 156470 114.58 847.403485098079 75.261 0.57499 75.261 74.766 75.341 0 27 19 2 0.374496775387961 0.00117250027754391 0.0343064013669549 0.00096205 2 17658 99.372 79.297 10 14438000 14748 13590 14741 13854 17931 14400 16223 15791 15884 41744 13955 12839 14879 14218 17983 14505 16587 17043 15687 39672 2 2 2 2 2 2 2 2 2 2 5356 1082 4718 5029 5951;5952 5952 1876;1877 TGDLGIPPNPEDRSPSPEPIYNSEGK 26 2 Phospho (STY) _TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGK_ TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK T(-49.51)GDLGIPPNPEDRS(49.51)PS(45.16)PEPIY(-45.16)NS(-58.29)EGK 0 0 2 1 Q15637 Q15637 Q15637 SF1 Splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.150390625 4 732.319046 2925.24708 33368.5988893046 1.7963 0.0013155 156460 114.58 156470 114.58 847.401875314045 76.638 3.6422 76.638 75.314 78.956 0 338 125 4 0.799488015870433 0.00449428501906998 0.0374113087521079 6.097E-05 3 18019 118.93 101.71 10 27482000 26811 29143 27596 25442 31887 26548 29820 30933 31991 42796 25373 27509 27792 26366 32079 26697 30513 32148 31473 41014 3 3 3 3 3 3 3 3 3 3 5357 1082 4718 5029 5953;5954;5955 5954 1876;1877 TGDLGIPPNPEDRSPSPEPIYNSEGK 26 2 Phospho (STY) _TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGK_ TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK T(-77.66)GDLGIPPNPEDRS(48.64)PS(40.68)PEPIY(-40.68)NS(-46.2)EGK 0 0 2 1 Q15637 Q15637 Q15637 SF1 Splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1129.19897460938 3 976.089636 2925.24708 29313.0315480121 0.96843 0.00094527 156520 152.78 156520 152.78 1129.53356623358 76.854 3.4978 76.854 75.92 79.418 0 272 120 4 0.392109466494 0.000659407801111775 0.0326698764829989 8.0536E-08 3 18345 160.43 138.81 10 14844000 10872 12707 12863 13876 13671 13145 14384 15270 14700 43064 10295 12011 12849 14164 13836 13316 14616 16532 14491 40903 3 3 3 3 3 3 3 3 3 3 5358 1082 4718 5029 5956;5957;5958 5958 1876;1877 TGGAYGEDLGADYNLSQVCDGK 22 Unmodified _TGGAYGEDLGADYNLSQVCDGK_ 0 0 0 0 P49327 P49327 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 917.114440917969 3 764.002461 2288.98556 31783.1991037123 1.9725 0.001507 199970 152.77 199970 152.78 917.445988836613 74.831 0.4901 74.831 74.54 75.03 0 43 16 3 0.953299279763226 0.00398260288869265 0.0885831660645226 1.9197E-17 1 17551 243.87 219.16 1 24707000 7965.7 13793 10801 12617 9573.8 12234 11757 13079 13448 24510 7548.2 13023 10702 13020 9820.5 12336 11909 13825 13197 23382 1 1 1 1 1 1 1 1 1 1 5359 636 4719 5030 5959 5959 TGKEYIPGQPPLSQSSDSSPTR 22 Phospho (STY) _TGKEYIPGQPPLSQSSDSS(ph)PTR_ TGKEYIPGQPPLSQS(0.005)S(0.008)DS(0.284)S(0.699)PT(0.004)R T(-117.95)GKEY(-115.94)IPGQPPLS(-39.68)QS(-21.13)S(-19.4)DS(-3.91)S(3.91)PT(-22.55)R 0 0 1 1 P07814 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 957.819885253906 3 804.707476 2411.1006 31564.527436672 1.3521 0.001088 189850 152.78 189850 152.78 957.81719262942 60.553 0.61078 60.553 60.165 60.776 0 60 20 4 0.976854307971554 0.00301722276845628 0.053628461681708 5.4833E-08 1 14189 149.85 133.34 8 17492000 7796.8 5999.1 7347.5 6288.7 7298.2 9026.6 7769.4 8208.2 6963.5 9961.9 7376 5668.8 7424.6 6483.4 7415.1 8934.1 7863.9 8565.3 6905.1 9570.3 1 1 1 1 1 1 1 1 1 1 5360 322 4720 5031 5960 5960 526;527;528 TGLYPASTVCPTREDSPPQAVEDLDGK 27 Phospho (STY) _TGLYPASTVCPTREDS(ph)PPQAVEDLDGK_ TGLYPASTVCPT(0.005)REDS(0.995)PPQAVEDLDGK T(-101.9)GLY(-132.86)PAS(-71.66)T(-71.66)VCPT(-23.05)REDS(23.05)PPQAVEDLDGK 0 0 1 1 P15976 P15976 P15976 GATA1 Erythroid transcription factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.424682617188 4 746.590226 2982.3318 33257.5351170676 1.7784 0.0013277 153470 114.58 153480 114.58 861.422532081697 78.635 1.0877 78.635 77.839 78.926 0 128 37 5 0.923011836483847 0.00362122849088809 0.0475614062233987 1.051E-17 2 18396 227.58 204.59 6 20228000 4980.2 16407 5511.7 15624 15532 5626.4 19230 13718 18491 22775 4714.5 15495 5649.1 15929 15222 6230.2 19376 14133 18277 21763 2 2 2 2 2 2 2 2 2 2 5361 400 4721 5032 5961;5962 5962 634 TGMGSGSAGK 10 Phospho (STY) _TGMGSGS(ph)AGK_ T(0.005)GMGS(0.044)GS(0.952)AGK T(-23.16)GMGS(-13.37)GS(13.37)AGK 0 0 1 0 Q86YS7 Q86YS7 Q86YS7 C2CD5 C2 domain-containing protein 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 695.844482421875 2 466.6808 931.347047 37657.1245037587 2.1631 0.0010095 491050 229.16 491050 229.16 695.843639262325 36.447 0.42714 36.447 36.233 36.66 -7.1054E-15 34 14 3 0.991171854357905 0.00212701454596346 0.071346690588019 0.010204 1 8214 82.202 56.264 3 24864000 36036 22700 36296 20548 22249 36723 22513 29155 23859 4977.4 34101 21431 36362 21489 23413 36002 22941 29688 23484 5361.6 1 1 1 1 1 1 1 1 1 1 5362 1403 4722 5033 5963 5963 2548 TGPPPISPSK 10 Phospho (STY) _TGPPPIS(ph)PSK_ TGPPPIS(0.952)PS(0.048)K T(-53.19)GPPPIS(12.99)PS(-12.99)K 0 0 1 0 Q14135 Q14135 Q14135 VGLL4 Transcription cofactor vestigial-like protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.922424316406 2 530.757365 1059.50018 37392.3094135722 2.6138 0.0013873 431770 229.16 431770 229.17 759.921228390539 51.229 0.66839 51.229 50.936 51.604 0 56 22 3 0.986152891270185 0.00122925968017406 0.0348652082209019 0.00033947 1 11899 110.58 80.415 3 13012000 26019 18962 27167 18593 16500 25124 16991 20807 19866 25601 24625 17911 27160 19218 17384 24886 17351 21810 19480 24588 1 1 1 1 1 1 1 1 1 1 5363 986 4723 5034 5964 5964 1666 TGQAGSLSGSPKPFSPQLSAPITTK 25 Phospho (STY) _TGQAGSLSGS(ph)PKPFSPQLSAPITTK_ TGQAGS(0.001)LS(0.017)GS(0.982)PKPFSPQLSAPITTK T(-99.4)GQAGS(-31.14)LS(-17.55)GS(17.55)PKPFS(-44.67)PQLS(-98.63)APIT(-142.3)T(-152.19)K 0 0 1 1 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1075.92541503906 3 846.426421 2536.25743 30300.0263613245 2.322 0.0019654 270740 229.16 270740 229.16 1075.92329902538 79.217 0.54819 79.217 78.926 79.474 0 81 18 6 0.99112577185374 0.00325280207928994 0.0342321194801065 1.5296E-24 1 18542 261.78 235.97 8 67508000 15314 32215 16954 31552 29833 17795 31482 28899 36996 16066 14498 30429 17138 32216 29542 18620 32117 29042 36270 15797 1 1 1 1 1 1 1 1 1 1 5364 2190 4724 5035 5965 5965 3969;4812 TGQAGSLSGSPKPFSPQLSAPITTK 25 2 Phospho (STY) _T(ph)GQAGSLSGS(ph)PKPFSPQLSAPITTK_ T(0.514)GQAGS(0.468)LS(0.304)GS(0.698)PKPFS(0.016)PQLSAPITTK T(0.64)GQAGS(-0.64)LS(-4.08)GS(4.08)PKPFS(-16.37)PQLS(-57.99)APIT(-98.3)T(-101.74)K 0 0 2 1 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 827.188903808594 4 655.063217 2616.22376 33413.1443716985 2.1107 0.0013827 262380 171.87 262380 171.87 827.186996969886 83.361 1.4437 83.361 82.885 84.329 1.4211E-14 136 49 5 0.630629978345952 0.00467834018158691 0.0904667169953158 3.9228E-05 1 19497 123.73 107.84 28 23551000 7726.9 12013 8689.3 13151 12902 10336 13215 11463 12996 9531.9 7315.2 11355 8746.4 13388 12848 10518 13431 11742 12833 9240.7 1 1 1 1 1 1 1 1 1 1 5365 2190 4724 5036 5966 5966 3969;4812 TGSCSELDACPSK 13 Phospho (STY) _TGS(ph)CSELDACPSK_ TGS(0.556)CS(0.444)ELDACPSK T(-35.72)GS(0.98)CS(-0.98)ELDACPS(-50.84)K 0 0 1 0 Q9H1H9 Q9H1H9 Q9H1H9 KIF13A Kinesin-like protein KIF13A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 975.943664550781 2 746.278206 1490.54186 32277.7766987976 1.8371 0.001371 307070 229.16 307080 229.16 975.441601925566 49.056 0.31573 49.056 48.913 49.228 0 27 10 3 0.957460349229215 0.000525295335232767 0.0117355359543175 1.1974E-07 1 11379 171.93 148.18 4 11517000 2937.8 23788 2796.4 23093 11632 3915 9767.2 12960 27032 6523.9 2779.4 22468 2928.6 23446 11273 4905.9 10505 12846 25940 6443 1 1 1 1 1 1 1 1 1 1 5366 1914 4725 5037 5967 5967 3478 TGSESSQTGTSTTSSR 16 Phospho (STY) _TGSES(ph)SQTGTSTTSSR_ T(0.001)GS(0.04)ES(0.815)S(0.14)QT(0.002)GTSTTSSR T(-27.38)GS(-13.04)ES(7.63)S(-7.63)QT(-25.34)GT(-32.68)S(-39.93)T(-47.09)T(-53.87)S(-60.08)S(-69.17)R 0 0 1 0 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 942.417846679688 2 827.33361 1652.65267 32696.7558504851 2.0458 0.0016925 138490 114.58 138500 114.58 941.914997151617 23.108 0.28716 23.108 22.949 23.236 0 22 9 3 0.980367774294571 0.00135882518218463 0.0442692466656286 0.00021421 1 5190 102.4 81.53 11 3028300 1476.9 381.43 2034.9 1135.2 1705.8 2297.3 1085.8 1800 1117.5 1342.1 1399.6 364.62 2011.7 1138.3 1741.7 2247.2 1135.9 1865.2 1101.3 1305.4 1 1 1 1 1 1 1 1 1 1 5367 468 4726 5038 5968 5968 773;774;4428 TGSGSPFAGNSPAR 14 Phospho (STY) _TGSGS(ph)PFAGNSPAR_ T(0.003)GS(0.035)GS(0.962)PFAGNSPAR T(-25.68)GS(-14.33)GS(14.33)PFAGNS(-62.96)PAR 0 0 1 0 Q9UPT8 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.877136230469 2 693.295905 1384.57726 34791.8692379701 1.7661 0.0012244 165270 114.58 165270 114.58 807.877425168142 41.137 0.51209 41.137 40.883 41.395 0 53 17 4 0.990960445152043 0.00144487568514651 0.0488420106450416 9.9418E-16 1 9358 229.44 189.22 4 40603000 25180 22983 23427 22997 20026 23265 18763 22206 24436 6157.5 23820 21711 23646 23616 20511 23306 19315 22501 23871 6312 1 1 1 1 1 1 1 1 1 1 5368 2219 4727 5039 5969 5969 4015;4016 TGSGSPFAGNSPAR 14 Phospho (STY) _TGSGSPFAGNS(ph)PAR_ TGSGSPFAGNS(1)PAR T(-149.13)GS(-126.24)GS(-115.04)PFAGNS(115.04)PAR 0 0 1 0 Q9UPT8 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.879272460938 2 693.295905 1384.57726 34638.4168742538 1.659 0.0011502 165270 114.58 165270 114.58 807.877594137247 44.423 0.6266 44.423 44.111 44.738 0 74 21 5 0.887440967375454 0.00205467230447658 0.0366791886465791 3.9537E-16 1 10165 242.24 225.22 4 117280000 26992 27585 28079 28227 27039 28808 31807 30387 30663 8878.9 25545 26062 28208 28953 27567 28887 32116 30686 30303 9063.8 1 1 1 1 1 1 1 1 1 1 5369 2219 4727 5039 5970 5970 4015;4016 TGSGSPFAGNSPAR 14 2 Phospho (STY) _TGSGS(ph)PFAGNS(ph)PAR_ T(0.001)GS(0.303)GS(0.696)PFAGNS(1)PAR T(-29.17)GS(-3.6)GS(3.6)PFAGNS(73.59)PAR 0 0 2 0 Q9UPT8 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 847.861450195313 2 733.27907 1464.54359 34647.4831318958 1.8703 0.0013714 156260 114.58 156260 114.58 847.860720536464 41.947 1.4007 41.947 41.569 42.969 0 118 48 4 0.730941545151754 0.000783834386157698 0.0109191598738281 3.6039E-06 2 9522 143.86 102.22 6 35939000 31684 30971 32888 26441 33099 34814 32992 31146 32147 18358 29985 29231 33049 27560 33575 34511 33565 31937 31755 18007 2 2 2 2 2 2 2 2 2 2 5370 2219 4727 5040 5971;5972 5971 4015;4016 TGSGSPFAGNSPAREGEQDAASLK 24 Phospho (STY) _TGSGSPFAGNS(ph)PAREGEQDAASLK_ TGSGSPFAGNS(1)PAREGEQDAASLK T(-106.73)GS(-89.01)GS(-66.29)PFAGNS(66.29)PAREGEQDAAS(-67.27)LK 0 0 1 1 Q9UPT8 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 958.470092773438 3 805.358847 2413.05471 31533.9734620085 1.686 0.0013578 189700 152.77 189700 152.78 958.468838720021 65.086 0.57649 65.086 64.822 65.399 0 72 19 5 0.98977582695336 0.00251554306375627 0.021970831770853 1.1621E-17 1 15277 221.23 188.53 5 24337000 11267 10391 12453 9983.6 13721 10677 14638 13460 12065 18466 10666 9813.3 12489 10287 13860 10740 14786 13950 12013 17700 1 1 1 1 1 1 1 1 1 1 5371 2219 4728 5041 5973 5973 4015;4016 TGSNDESPAELR 12 3 Phospho (STY) _T(ph)GS(ph)NDES(ph)PAELR_ T(1)GS(1)NDES(1)PAELR T(48.82)GS(48.82)NDES(48.82)PAELR 0 0 3 0 REV__Q96GW7 REV__Q96GW7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 582.218688964844 3 505.831565 1514.47286 41618.778709284 1.3161 0.00066572 151010 76.386 151010 76.387 582.217631521891 69.886 0.57721 69.886 69.638 70.215 0 69 19 5 0.900453426095645 0.00119785369534089 0.0116613718454754 0.056604 1 16404 48.823 35.842 1 10073000 6874.9 4033.6 7014.6 4194.8 5892.9 7272.6 5748.1 6469.7 4772.9 3580.5 6505.9 3811.3 7041.2 4346.7 6043.4 7149 5831.3 6628.6 4750.8 3521.2 1 1 1 1 1 1 1 1 1 1 + 5372 2345 4729 5042 5974 5974 4302;4303 TGSNISGASSDISLDEQYK 19 Phospho (STY) _TGSNIS(ph)GASSDISLDEQYK_ T(0.024)GS(0.018)NIS(0.95)GAS(0.008)SDISLDEQYK T(-15.97)GS(-17.33)NIS(15.97)GAS(-20.61)S(-53.65)DIS(-93.89)LDEQY(-159)K 0 0 1 0 P22059 P22059 P22059 OSBP Oxysterol-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.742614746094 3 684.631685 2050.87322 33655.7062797032 1.9683 0.0013476 223150 152.78 223150 152.78 837.741451413151 69.515 0.49426 69.515 69.264 69.758 1.4211E-14 47 16 4 0.979774391044069 0.00378396460458795 0.0402927175293894 5.5712E-11 1 16306 182.72 163.41 7 14330000 8486.7 11152 8548.5 11099 11027 9553.3 10480 12341 10990 13790 8030.9 10535 8633.6 11375 11037 9705.6 10708 12687 10822 13271 1 1 1 1 1 1 1 1 1 1 5373 454 4730 5043 5975 5975 742;743;4423 TGSNISGASSDISLDEQYK 19 Phospho (STY) _TGS(ph)NISGASSDISLDEQYK_ T(0.088)GS(0.591)NIS(0.321)GASSDISLDEQYK T(-8.28)GS(2.66)NIS(-2.66)GAS(-48.65)S(-68.13)DIS(-124.47)LDEQY(-213.47)K 0 0 1 0 P22059 P22059 P22059 OSBP Oxysterol-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1255.61083984375 2 1026.44389 2050.87322 28078.3147816373 1.6891 0.0017338 223260 229.16 223260 229.16 1255.60677428066 70.234 0.31614 70.234 70.045 70.361 0 25 10 3 0.914592374597273 0.000210410225696091 0.00194858941165821 3.6906E-31 1 16501 300.06 266.76 7 10390000 4548.4 9430.5 4983.2 9136.8 2765.4 4818.2 4036.7 6243.1 9998.5 8270.9 4305.6 8907 4968 9329.9 2960.9 5055.7 4211.3 6456.3 9612.7 7932.6 1 1 1 1 1 1 1 1 1 1 5374 454 4730 5043 5976 5976 742;743;4423 TGSNISGASSDISLDEQYK 19 2 Phospho (STY) _TGS(ph)NIS(ph)GASSDISLDEQYK_ T(0.425)GS(0.612)NIS(0.935)GAS(0.012)S(0.016)DISLDEQYK T(-1.74)GS(1.74)NIS(11.6)GAS(-19.74)S(-18.21)DIS(-40.21)LDEQY(-88.01)K 0 0 2 0 P22059 P22059 P22059 OSBP Oxysterol-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 864.395874023438 3 711.287128 2130.83955 32994.2394060778 1.9403 0.0013801 214790 152.78 214790 152.78 864.395640636547 72.802 1.8578 72.802 71.954 73.812 0 158 63 4 0.84408612500215 0.00392885373218967 0.0613778084511049 9.7069E-05 2 17055 101.58 81.758 21 28343000 17252 18828 17163 16551 12199 15372 14614 20003 14605 99404 16325 17773 17231 17114 12707 15706 14760 22880 14411 94064 2 2 2 2 2 2 2 2 2 2 5375 454 4730 5044 5977;5978 5977 742;743;4423 TGSPGKKEEK 10 Phospho (STY) _TGS(ph)PGKKEEK_ T(0.05)GS(0.95)PGKKEEK T(-12.83)GS(12.83)PGKKEEK 0 0 1 2 Q4LE39 Q4LE39 Q4LE39 ARID4B AT-rich interactive domain-containing protein 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.734191894531 3 380.848066 1139.52237 38357.5623931257 2.4336 0.00092682 802290 305.55 802290 305.55 686.398994178883 33.545 0.34931 33.545 33.407 33.757 0 27 11 3 0.845235935768212 0.00232364496515492 0.00800950275187562 0.022638 1 7505 62.162 40.604 2 18919000 17869 19318 17310 20434 19966 19906 20698 20839 22212 4740.4 16906 18255 17496 20905 20117 19997 21075 21010 21853 4945.9 1 1 1 1 1 1 1 1 1 1 5376 1142 4731 5045 5979 5979 1987 TGSPGPELLFHEGQQK 16 Phospho (STY) _T(ph)GSPGPELLFHEGQQK_ T(0.581)GS(0.419)PGPELLFHEGQQK T(1.41)GS(-1.41)PGPELLFHEGQQK 0 0 1 0 Q14202 Q14202 Q14202 ZMYM3 Zinc finger MYM-type protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.392456054688 3 602.280369 1803.81928 35154.0491847034 1.8287 0.0011014 253660 152.78 253660 152.78 755.389962441659 73.076 0.69442 73.076 72.749 73.443 0 96 23 5 0.995629761593383 0.00374846178863827 0.0450685456138735 1.0341E-10 1 17127 197.72 178.06 2 79457000 14156 18640 12622 15991 13250 13913 13748 16515 17288 17933 13389 17594 12806 16547 13419 14105 14067 17005 16908 17268 1 1 1 1 1 1 1 1 1 1 5377 1000 4732 5046 5980 5980 4554 TGSPTFVR 8 Phospho (STY) _TGS(ph)PTFVR_ T(0.123)GS(0.772)PT(0.105)FVR T(-7.98)GS(7.98)PT(-8.66)FVR 0 0 1 0 Q9UPP1 Q9UPP1 Q9UPP1 PHF8 Histone lysine demethylase PHF8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 587.297790527344 2 472.7155 943.416447 39716.3703739429 1.3155 0.00062186 242390 114.58 242390 114.58 587.297322921261 47.054 0.52012 47.054 46.687 47.207 0 42 17 3 0.979004129284725 0.00147147690095934 0.0132989761658953 0.00021821 1 10835 134.23 75.247 3 21739000 18102 13956 17289 13950 19449 19003 17390 16865 14812 5523.2 17126 13184 17478 14405 19577 18805 17730 17166 14724 5591.1 1 1 1 1 1 1 1 1 1 1 5378 2216 4733 5047 5981 5981 4011 TGSSPNSVSSSPTNSAITQLR 21 Phospho (STY) _TGSSPNSVSSS(ph)PTNSAITQLR_ TGSSPNSVSS(0.029)S(0.964)PT(0.007)NSAITQLR T(-92.2)GS(-92.63)S(-87.27)PNS(-70.01)VS(-43.2)S(-15.26)S(15.26)PT(-21.63)NS(-34.16)AIT(-52.37)QLR 0 0 1 0 O60315 O60315 O60315 ZEB2 Zinc finger E-box-binding homeobox 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 800.726867675781 3 724.337383 2169.99032 33599.707467323 1.5432 0.0011178 105460 76.388 105460 76.389 800.725147359546 58.134 0.35635 58.134 57.935 58.291 0 29 11 3 0.977085653529005 0.00107812979138718 0.011335379971924 4.4235E-06 1 13636 136.37 103.12 10 26515000 8581 8803.3 9602.3 9013.9 8354.1 8503.4 6656 8348.8 9795.8 12201 8123.7 8317.4 9591.8 9234.1 8530.4 8567.2 6942.8 8748.1 9532.4 11682 1 1 1 1 1 1 1 1 1 1 5379 142 4734 5048 5982 5982 240;241 TGSSPNSVSSSPTNSAITQLR 21 Phospho (STY) _TGSS(ph)PNSVSSSPTNSAITQLR_ T(0.103)GS(0.129)S(0.759)PNS(0.009)VSSSPTNSAITQLR T(-8.66)GS(-7.7)S(7.7)PNS(-19.32)VS(-66.34)S(-73.45)S(-81.72)PT(-106.42)NS(-112.95)AIT(-134.06)QLR 0 0 1 0 O60315 O60315 O60315 ZEB2 Zinc finger E-box-binding homeobox 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.060424804688 3 724.337383 2169.99032 33954.3954533547 1.5446 0.0011188 105460 76.386 105460 76.387 800.724214925253 59.727 0.71947 59.727 59.247 59.967 -7.1054E-15 86 24 6 0.969315470623158 0.00552045061653629 0.0257572485420342 4.3503E-08 1 13995 162.47 136.33 10 56215000 9810.1 9876.9 13472 8777.8 14938 12914 11147 11223 12105 8157.2 9296.6 9324.1 13366 9146.3 15019 12753 11555 11569 11903 7940.8 1 1 1 1 1 1 1 1 1 1 5380 142 4734 5048 5983 5983 240;241 TGSSPNSVSSSPTNSAITQLR 21 2 Phospho (STY) _TGSS(ph)PNSVSSS(ph)PTNSAITQLR_ T(0.017)GS(0.118)S(0.864)PNS(0.001)VSS(0.081)S(0.917)PT(0.002)NSAITQLR T(-17.17)GS(-8.7)S(8.7)PNS(-29.85)VS(-43.61)S(-10.66)S(10.66)PT(-26.78)NS(-39.57)AIT(-57.91)QLR 0 0 2 0 O60315 O60315 O60315 ZEB2 Zinc finger E-box-binding homeobox 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 827.381103515625 3 750.992827 2249.95665 34140.8225819114 2.4848 0.001866 101710 76.386 101720 76.388 827.379086057412 63.095 0.58907 63.095 62.902 63.491 0 45 19 3 0.943961756105593 0.00141313561757454 0.0289157951805096 1.3897E-07 1 14849 145.19 110.94 45 11627000 7111.9 7295.9 6514.7 7036.8 6879.3 7640.9 7485.5 6984.4 6900.6 12160 6727.4 6890.7 6599.9 7250.7 6967.6 7646.6 7574.5 7397.7 6833.6 11612 1 1 1 1 1 1 1 1 1 1 5381 142 4734 5049 5984 5984 240;241 TGSTSSKEDDYESDAATIVQK 21 Phospho (STY) _TGST(ph)SSKEDDYESDAATIVQK_ T(0.006)GS(0.175)T(0.685)S(0.127)S(0.006)KEDDYESDAATIVQK T(-20.43)GS(-5.92)T(5.92)S(-7.32)S(-20.43)KEDDY(-127.39)ES(-98.73)DAAT(-164.13)IVQK 0 0 1 1 Q5T4S7 Q5T4S7 Q5T4S7 UBR4 E3 ubiquitin-protein ligase UBR4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1000.49652099609 3 771.331963 2310.97406 31082.3061615423 2.2818 0.00176 297100 229.16 297100 229.17 1000.82939316846 69.358 0.51546 69.358 69.061 69.577 0 54 17 5 0.958372455024552 0.00120568073291031 0.0266436106733735 4.1976E-16 1 16247 226.9 188.66 8 19121000 12345 8527.8 12722 7009.9 5727.3 13324 5649.9 9796.9 7656.4 14486 11683 8047.3 12703 7391.6 6225.9 13057 5809.7 10400 7469.4 13867 1 1 1 1 1 1 1 1 1 1 5382 1184 4735 5050 5985 5985 4603 TGSYGALAEITASK 14 Phospho (STY) _T(ph)GSYGALAEITASK_ T(0.597)GS(0.403)YGALAEITASK T(1.7)GS(-1.7)Y(-57.45)GALAEIT(-113.53)AS(-135.61)K 0 0 1 0 O14974 O14974 O14974 PPP1R12A Protein phosphatase 1 regulatory subunit 12A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.671020507813 3 483.560473 1447.65959 39361.2885256543 1.7974 0.00086913 315940 152.78 315940 152.78 636.335865096687 84.753 1.0373 84.753 84.439 85.477 0 143 35 6 0.984938607293106 0.0125091658256253 0.310255404524774 3.2578E-07 1 19767 167.29 143.61 5 164510000 11769 15588 13992 13751 15030 13523 17080 14404 15038 9242.8 11145 14715 13978 14227 15218 13593 17232 14693 14925 9036.5 1 1 1 1 1 1 1 1 1 1 5383 73 4736 5051 5986 5986 4319 THPYSPK 7 Phospho (STY) _THPYS(ph)PK_ THPY(0.001)S(0.998)PK T(-34.56)HPY(-28.79)S(28.79)PK 0 0 1 0 P22415;Q15853 P22415 P22415 USF1;USF2 Upstream stimulatory factor 1;Upstream stimulatory factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 456.575927734375 3 303.800388 908.379333 46294.9122603696 0.35408 0.00010757 502880 152.78 502880 152.78 456.57571582522 35.392 0.58762 35.392 35.15 35.737 0 74 19 5 0.874010233458369 0.00700252196953378 0.190937725701739 0.0011382 1 7947 109.02 85.701 3 64384000 59733 42667 63175 38779 27146 59578 30750 41258 41826 2061.8 56535 40284 62981 40388 29737 58564 31431 42156 40800 2896.3 1 1 1 1 1 1 1 1 1 1 5384 458 4737 5052 5987 5987 749 THSDQFLVAFK 11 Phospho (STY) _T(ph)HSDQFLVAFK_ T(0.56)HS(0.44)DQFLVAFK T(1.04)HS(-1.04)DQFLVAFK 0 0 1 0 P36542 P36542 P36542 ATP5C1 ATP synthase subunit gamma, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.991149902344 3 458.214749 1371.62242 40382.5440795116 1.5104 0.00069209 333420 152.78 333420 152.78 611.325030776416 84.368 0.59085 84.368 84.102 84.692 0 52 20 3 0.966819730213714 0.00147510378162375 0.0127343007679454 0.001204 1 19712 99.481 79.694 2 10681000 4839.6 8673.8 4717.2 7262.6 5860 5462.6 6113.9 6943.3 8906.4 4493.6 4579 8185.8 4771.5 7514.2 5885.5 5582.8 6287.7 7042.6 8669.6 4392 1 1 1 1 1 1 1 1 1 1 5385 555 4738 5053 5988 5988 4455 THSMKDK 7 Phospho (STY) _THS(ph)MKDK_ T(0.016)HS(0.984)MKDK T(-17.95)HS(17.95)MKDK 0 0 1 1 Q71F23 Q71F23 Q71F23 CENPU Centromere protein U MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.628051757813 3 309.464899 925.372868 42941.3121045104 2.0157 0.00062379 740510 229.16 740520 229.16 538.627823765096 31.106 0.59411 31.106 30.819 31.413 0 65 19 5 0.927965547277267 0.00593339270362224 0.112393598875074 0.0096729 1 6934 77.379 46.721 2 44262000 26483 35757 31665 34116 18663 28326 20443 28365 32180 1854.7 25079 33769 31431 35036 19743 28655 21045 28506 31254 2402.9 1 1 1 1 1 1 1 1 1 1 5386 1308 4739 5054 5989 5989 2334 THSQGGYGSQGYK 13 Phospho (STY) _THS(ph)QGGYGSQGYK_ T(0.163)HS(0.837)QGGYGSQGYK T(-7.1)HS(7.1)QGGY(-41.32)GS(-72.03)QGY(-118.21)K 0 0 1 0 Q9Y285 Q9Y285 Q9Y285 FARSA Phenylalanine--tRNA ligase alpha subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.640625 3 483.864667 1448.57217 39068.584576403 1.5537 0.0007518 315740 152.78 315740 152.78 636.640095462438 35.556 0.46597 35.556 35.299 35.765 0 38 15 4 0.707232474007806 0.00144708256679412 0.0228860721537097 3.5456E-06 1 8000 138.05 106.21 5 11924000 17264 13686 16400 12434 15123 19387 17499 15865 12827 5442.7 16333 12922 16552 12955 15452 19088 17571 16214 12854 5492.1 1 1 1 1 1 1 1 1 1 1 5387 2239 4740 5055 5990 5990 4135 THTGEKK 7 Phospho (STY) _T(ph)HTGEKK_ T(0.69)HT(0.31)GEKK T(3.48)HT(-3.48)GEKK 0 0 1 1 P08047;Q13118;O14901;Q02447;Q9Y2Y9 P08047;Q9Y2Y9 P08047 SP1;KLF10;KLF11;SP3;KLF13 Transcription factor Sp1;Krueppel-like factor 10;Krueppel-like factor 11;Transcription factor Sp3;Krueppel-like factor 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.299072265625 3 294.135659 879.385147 43116.2001722007 1.2836 0.00037754 779110 229.16 779110 229.16 523.298909288853 25.114 0.26331 25.114 24.977 25.24 0 23 8 3 0.982489689130432 0.00266212449326476 0.0351026047851824 0.046492 1 5602 66.692 33.429 2 8284900 5215.8 10404 5904.4 10636 5491.5 4100.5 4866.2 7992.2 12576 2448.1 4938.1 9829.4 5899.6 10801 5595.7 4455.2 5194.5 7939.7 12082 2490.1 1 1 1 1 1 1 1 1 1 1 5388 327;2261 4741 5056 5991 5991 4380 THTGERPNACADCGK 15 Phospho (STY) _THT(ph)GERPNACADCGK_ T(0.418)HT(0.582)GERPNACADCGK T(-1.44)HT(1.44)GERPNACADCGK 0 0 1 1 Q6DD87 Q6DD87 Q6DD87 ZNF787 Zinc finger protein 787 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.341186523438 3 585.230915 1752.67092 36342.5354860919 2.0383 0.0011929 261050 152.77 261050 152.78 738.006158446974 26.209 0.31958 26.209 26.045 26.364 3.5527E-15 36 10 5 0.99457370793328 0.00880784459643257 0.105361314681374 2.5223E-10 1 5831 194.51 144.15 2 29073000 5547.6 22699 5933.1 23306 18591 7098.5 18999 17232 25279 2272.3 5250.9 21446 6107.9 23633 18130 7969.9 19492 16960 24676 2538.4 1 1 1 1 1 1 1 1 1 1 5389 1235 4742 5057 5992 5992 4616 THTRVSVQR 9 Phospho (STY) _THTRVS(ph)VQR_ THT(0.001)RVS(0.999)VQR T(-38.91)HT(-29.83)RVS(29.83)VQR 0 0 1 1 P15880 P15880 P15880 RPS2 40S ribosomal protein S2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 464.915466308594 3 388.52755 1162.56082 45408.9061155458 0.52593 0.00020434 196610 76.388 196610 76.388 464.915483874227 23.68 0.40471 23.68 23.44 23.845 0 39 13 5 0.971614204745377 0.0148879076489503 0.193160624536408 0.0054655 1 5292 84.169 52.01 3 32335000 8977.5 6009.5 9609.2 5684.4 7526 9391.1 7166 7162.6 5948.1 2115.9 8497.3 5675.1 9613.5 5915.9 7754.2 9223.7 7278.3 7334.7 5920.6 2158.2 1 1 1 1 1 1 1 1 1 1 5390 396 4743 5058 5993 5993 630 THVGSYK 7 Phospho (STY) _THVGS(ph)YK_ THVGS(1)YK T(-38.54)HVGS(38.54)Y(-44.44)K 0 0 1 0 Q12849 Q12849 Q12849 GRSF1 G-rich sequence factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 443.903747558594 3 291.128504 870.363683 46956.8483703765 1.0929 0.00031818 524770 152.78 524770 152.78 443.903732770699 39.244 0.81048 39.244 38.904 39.715 0 69 27 4 0.738631039156085 0.00409198165323248 0.0550001359638673 0.0013529 1 8884 103.26 84.475 3 68498000 39512 44534 42421 40452 29671 44004 30685 40310 46243 3011.9 37400 42047 42394 41841 30892 43908 31612 40667 44968 3769 1 1 1 1 1 1 1 1 1 1 5391 906 4744 5059 5994 5994 1492 TIAATPIQTLPQSQSTPK 18 Phospho (STY) _TIAATPIQTLPQSQST(ph)PK_ TIAATPIQTLPQS(0.008)QS(0.17)T(0.823)PK T(-114.25)IAAT(-105.84)PIQT(-80.71)LPQS(-20.4)QS(-6.86)T(6.86)PK 0 0 1 0 P14859 P14859 P14859 POU2F1 POU domain, class 2, transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.445739746094 3 654.669634 1960.98707 35950.7095548919 2.0641 0.0013513 233360 152.78 233360 152.78 807.778734024501 72.553 0.46756 72.553 72.281 72.749 0 41 15 5 0.768426686766772 0.000509413689696977 0.0144135183103774 2.5656E-05 1 17059 130.05 98.175 6 13519000 6055.7 6069.8 6827.6 8286.8 5675.3 7410.1 5208.5 6626.1 6674.8 13870 5733.2 5746.6 6815.7 8359.2 5822.1 7482.9 5364.4 7094.8 6523.8 13214 1 1 1 1 1 1 1 1 1 1 5392 390 4745 5060 5995 5995 4397 TIETSPSLSR 10 Phospho (STY) _TIETS(ph)PSLSR_ TIET(0.033)S(0.965)PS(0.002)LSR T(-67)IET(-14.65)S(14.65)PS(-28.03)LS(-60.9)R 0 0 1 0 Q9NVI1 Q9NVI1 Q9NVI1 FANCI Fanconi anemia group I protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.352416992188 2 585.773743 1169.53293 37282.5291707978 1.2019 0.00070403 195600 114.58 195600 114.58 700.352752451815 48.023 0.67695 48.023 47.715 48.392 0 32 22 2 0.991014098055932 0.00297863808881818 0.027440841818467 1.9525E-09 1 11130 179.95 126.52 5 45298000 27656 49281 32059 45515 34469 29451 34646 36533 49473 8441 26186 46533 32058 46705 34853 30341 35664 36625 48186 8793.7 1 1 1 1 1 1 1 1 1 1 5393 2045 4746 5061 5996 5996 3707 TIGGGDDSFNTFFSETGAGK 20 Unmodified _TIGGGDDSFNTFFSETGAGK_ 0 0 0 0 Q9BQE3;Q6PEY2;Q13748;P68363;Q71U36 Q9BQE3;P68363 P68363 TUBA1C;TUBA3E;TUBA3C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 823.078491210938 3 669.969198 2006.88576 34146.9672547318 2.384 0.0015972 228030 152.78 228040 152.78 823.078899479149 93.252 0.67332 93.252 92.916 93.59 0 76 22 4 0.968863384594144 0.00433652314408777 0.0460428191566504 3.139E-11 1 21665 191.64 148.45 1 232010000 10297 12346 9781.6 11986 8939.5 11032 11747 12173 14217 27759 9741.3 11661 9874.1 12313 9163.6 11167 11890 13002 13924 26420 1 1 1 1 1 1 1 1 1 1 5394 789;1805 4747 5062 5997 5997 TIGGGDDSFNTFFSETGAGK 20 Phospho (STY) _TIGGGDDS(ph)FNTFFSETGAGK_ TIGGGDDS(0.99)FNT(0.01)FFSETGAGK T(-49.1)IGGGDDS(20.14)FNT(-20.14)FFS(-114.18)ET(-130)GAGK 0 0 1 0 Q9BQE3;Q6PEY2;Q13748;P68363;Q71U36 Q9BQE3;P68363 P68363 TUBA1C;TUBA3E;TUBA3C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.736328125 3 696.624641 2086.8521 33776.8436096882 1.8276 0.0012732 219310 152.78 219310 152.78 849.734470117065 97.082 1.7665 97.082 96.549 98.316 0 236 60 7 0.912712168994746 0.0081039646846741 0.0563999353243908 4.0572E-11 2 22497 181.82 147.62 5 339510000 8919.9 14323 8498 16732 19547 8759.7 19401 17880 18711 106890 8439 13544 8716.3 16904 19181 9451.8 19736 20803 18491 101060 2 2 2 2 2 2 2 2 2 2 5395 789;1805 4747 5063 5998;5999 5998 1262;4499 TIGGGDDSFNTFFSETGAGK 20 Phospho (STY) _T(ph)IGGGDDSFNTFFSETGAGK_ T(0.666)IGGGDDS(0.331)FNT(0.003)FFSETGAGK T(3.04)IGGGDDS(-3.04)FNT(-23.65)FFS(-62.31)ET(-65.36)GAGK 0 0 1 0 Q9BQE3;Q6PEY2;Q13748;P68363;Q71U36 Q9BQE3;P68363 P68363 TUBA1C;TUBA3E;TUBA3C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.405456542969 3 696.624641 2086.8521 33925.2969576391 2.089 0.0014553 219310 152.78 219310 152.78 849.735321838341 98.471 0.28963 98.471 98.256 98.546 0 13 9 2 0.41617094418975 0.000706965530432943 0.0243667054721075 0.013128 1 22857 79.237 54.937 5 10164000 5727.7 7281.1 5864.4 7612.9 7647.8 5714.5 6931.9 7667.2 8885.7 35451 5420.3 6880.1 5917.8 7765.9 7647.4 5903.9 7143.9 8683.3 8684.6 33558 1 1 1 1 1 1 1 1 1 1 5396 789;1805 4747 5063 6000 6000 1262;4499 TIGYTSPR 8 Phospho (STY) _TIGYTS(ph)PR_ TIGYT(0.094)S(0.906)PR T(-37.87)IGY(-34.98)T(-9.84)S(9.84)PR 0 0 1 0 Q8IZD2 Q8IZD2 Q8IZD2 KMT2E Histone-lysine N-methyltransferase 2E MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 602.302307128906 2 487.720782 973.427012 40494.3289226242 1.5312 0.00074682 234930 114.58 234930 114.58 602.301647697526 44.096 0.46792 44.096 43.847 44.315 7.1054E-15 45 15 4 0.811931692315147 0.00122832163755919 0.0470735138911182 0.020874 1 10120 66.27 27.122 4 18307000 19320 21157 17222 24137 16035 19360 18637 19695 23464 5769.6 18274 20004 17453 24524 16384 19634 18978 19917 22947 5888.6 1 1 1 1 1 1 1 1 1 1 5397 1442 4748 5064 6001 6001 2675 TIQEVLEEQSEDEDREAK 18 Phospho (STY) _TIQEVLEEQS(ph)EDEDREAK_ TIQEVLEEQS(1)EDEDREAK T(-136.09)IQEVLEEQS(136.09)EDEDREAK 0 0 1 1 P18858 P18858 P18858 LIG1 DNA ligase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 896.43359375 3 743.32492 2226.95293 33213.6216790406 1.8447 0.0013712 205530 152.78 205530 152.78 896.43424049846 72.375 1.0532 72.375 72.076 73.129 0 100 35 4 0.990774639950525 0.00277880422183666 0.0143458060653693 7.1074E-11 1 16958 183.15 166.59 2 29609000 14380 14013 13371 16200 16410 13539 17803 17234 19587 34433 13603 13251 13562 16457 16495 13801 18104 18181 19251 32821 1 1 1 1 1 1 1 1 1 1 5398 434 4749 5065 6002 6002 706 TISGPLIPPASPR 13 Phospho (STY) _TISGPLIPPAS(ph)PR_ TISGPLIPPAS(1)PR T(-68.99)IS(-48.32)GPLIPPAS(48.32)PR 0 0 1 0 A6NGB9 A6NGB9 A6NGB9 WIPF3 WAS/WASL-interacting protein family member 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.944152832031 2 693.36306 1384.71157 NaN NaN NaN NaN NaN NaN NaN NaN 75.295 1 75.295 74.795 75.795 0 NaN NaN NaN 0.0307 1 17671 75.378 66.959 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5399 9 4750 5066 6003 6003 21 TISINSPK 8 Phospho (STY) _TISINS(ph)PK_ TISINS(1)PK T(-52.15)IS(-45.88)INS(45.88)PK 0 0 1 0 Q9P1Y6 Q9P1Y6 Q9P1Y6 PHRF1 PHD and RING finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 466.598419189453 3 313.823081 938.447413 46156.8281752952 0.5872 0.00018428 486820 152.78 486820 152.78 466.598323241884 58.444 0.46651 58.444 58.201 58.667 0 27 15 2 0.97140240395766 0.0015250951584963 0.0352824581330104 0.0096687 1 13671 74.841 47.36 3 13920000 8911.6 8887.9 9023 9454.7 4186.9 9533.5 5005.3 8347.2 9806 1220 8433.1 8399.3 9021.6 9674.4 4550.6 9539.8 5187.1 8455.6 9472 1341.9 1 1 1 1 1 1 1 1 1 1 5400 2096 4751 5067 6004 6004 3789 TISNPEVVMK 10 Oxidation (M),Phospho (STY) _TIS(ph)NPEVVM(ox)K_ TISNPEVVM(1)K T(0.212)IS(0.788)NPEVVMK TISNPEVVM(81.91)K T(-5.71)IS(5.71)NPEVVMK 0 1 1 0 P55196 P55196 P55196 MLLT4 Afadin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.965148925781 3 405.189323 1212.54614 42821.3558081003 1.6024 0.00064927 377050 152.77 377050 152.78 557.964410267491 59.508 0.57423 59.508 59.162 59.736 0 54 19 4 0.816739008384192 0.00285682364705981 0.100320008718885 0.0064701 1 13948 81.908 47.376 2 18770000 6711.5 14373 7837.4 12501 7484.2 6742.7 7965.3 8652.2 14641 2840.3 6355 13567 7823.7 12857 7628.9 7044.8 8267.7 8690.4 14163 2874.7 1 1 1 1 1 1 1 1 1 1 5401 720 4752 5068 6005 6005 94 1201 TISNPEVVMK 10 Phospho (STY) _TIS(ph)NPEVVMK_ T(0.008)IS(0.992)NPEVVMK T(-21)IS(21)NPEVVMK 0 0 1 0 P55196 P55196 P55196 MLLT4 Afadin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 828.449340820313 2 599.282889 1196.55123 34634.2955638221 2.2183 0.0013294 382400 229.16 382400 229.16 828.446276866111 71.469 0.57677 71.469 71.174 71.751 0 75 19 5 0.996292692332816 0.00274661722170998 0.165687689201545 2.7738E-06 1 16739 150.29 116.42 2 90653000 8794.5 60725 9314.8 58431 13292 6550.9 11765 28193 63055 18409 8323.8 57351 9395.3 59301 13281 9187.9 13454 27996 60041 17987 1 1 1 1 1 1 1 1 1 1 5402 720 4752 5069 6006 6006 1201 TISPAESTALLQGR 14 Phospho (STY) _TIS(ph)PAESTALLQGR_ T(0.306)IS(0.694)PAESTALLQGR T(-3.56)IS(3.56)PAES(-53.45)T(-66.85)ALLQGR 0 0 1 0 Q03188 Q03188 Q03188 CENPC Centromere protein C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.959777832031 2 762.376895 1522.73924 34391.5612220808 1.4288 0.0010893 150300 114.58 150300 114.58 876.95835040477 76.013 0.73146 76.013 75.628 76.359 1.4211E-14 63 24 4 0.986019175206756 0.00102633284034812 0.020627809582037 9.2599E-12 1 17808 212.35 176.4 4 14185000 8460.1 15808 8039.2 14346 6070.2 6871.3 4564.2 8868.5 15390 14693 8003.9 14925 8092.3 14699 6265.2 7273.8 5014.7 9261.1 14726 14041 1 1 1 1 1 1 1 1 1 1 5403 858 4753 5070 6007 6007 1387 TISPPPAPAPAAAPLPCGPTETIPSFLLTR 30 Phospho (STY) _TIS(ph)PPPAPAPAAAPLPCGPTETIPSFLLTR_ T(0.229)IS(0.771)PPPAPAPAAAPLPCGPTETIPSFLLTR T(-5.27)IS(5.27)PPPAPAPAAAPLPCGPT(-95.66)ET(-97.85)IPS(-100.82)FLLT(-100.66)R 0 0 1 0 Q7Z591 Q7Z591 Q7Z591 AKNA AT-hook-containing transcription factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1117.921875 3 1040.86616 3119.57666 29886.8912422613 0.42004 0.0004372 73388 76.387 73388 76.387 1117.92272386842 101.19 0.17272 101.19 101.07 101.24 0 18 5 5 0.9686106048618 0.00634348020450348 0.151611705089622 9.2803E-05 1 23754 102.42 92.712 6 33358000 8604.8 5670.9 8033.6 6237.8 6018.9 8564.8 8383 8429.2 5501.2 76756 8140.2 5360.3 8102 6407.6 6257.6 8623.9 8340.7 10773 5550.3 72470 1 1 1 1 1 1 1 1 1 1 5404 1346 4754 5071 6008 6008 2428 TISPPTLGTLR 11 Phospho (STY) _TIS(ph)PPTLGTLR_ T(0.079)IS(0.92)PPTLGTLR T(-10.64)IS(10.64)PPT(-35.78)LGT(-72.45)LR 0 0 1 0 Q9UQ84 Q9UQ84 Q9UQ84 EXO1 Exonuclease 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.905822753906 2 618.323403 1234.63225 37732.1429869908 1.8697 0.0011561 185310 114.58 185310 114.58 732.905420971759 79.599 1.2057 79.599 78.926 80.132 0 103 41 3 0.89567715544773 0.000766432277121953 0.0426464238470668 0.00018777 1 18589 114.93 89.636 4 9574600 7984.8 9481.4 7307.5 9551.3 8470.1 7989.5 7655.9 9278.2 9735.4 11164 7553.2 8957.2 7409.9 9777.6 8517.3 8115.2 7889.1 9593.1 9517.7 10727 1 1 1 1 1 1 1 1 1 1 5405 2228 4755 5072 6009 6009 4120 TISQSSSLK 9 Phospho (STY) _TIS(ph)QSSSLK_ T(0.044)IS(0.775)QS(0.148)S(0.029)S(0.006)LK T(-12.51)IS(7.2)QS(-7.2)S(-14.33)S(-21.38)LK 0 0 1 0 Q9UHB7 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.907775878906 2 515.744454 1029.47436 35758.37001247 2.6525 0.001368 444340 229.16 444340 229.17 744.907853905735 53.608 0.45083 53.608 53.323 53.773 0 31 14 3 0.601817078665244 0.000929651187835827 0.0154360660532772 0.027928 1 12481 59.935 20.67 5 15940000 28222 31648 32756 33994 27755 30792 29008 28209 33992 14183 26722 29910 32663 34709 28483 31002 29604 28823 33329 14008 1 1 1 1 1 1 1 1 1 1 5406 2145 4756 5073 6010 6010 3866 TITLEVEPSDTIENVK 16 Unmodified _TITLEVEPSDTIENVK_ 0 0 0 0 P62979;P62987;P0CG47;P0CG48 P62979 P62979 RPS27A;UBA52;UBB;UBC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.42431640625 3 596.647285 1786.92002 36429.9511380123 1.7469 0.0010423 256060 152.77 256060 152.78 749.756375249297 83.975 0.68721 83.975 83.67 84.357 -1.4211E-14 80 23 5 0.883455470785944 0.0028687901854717 0.0416411742020707 5.8462E-11 1 19592 200.97 165.01 1 45781000 7345.3 10081 7983.2 9482.8 10122 7492.9 11410 9741 12128 13116 6953 9520.1 8030.6 9741.2 10165 7652.3 11572 10079 11936 12576 1 1 1 1 1 1 1 1 1 1 5407 775 4757 5074 6011 6011 TKECSVEK 8 Phospho (STY) _TKECS(ph)VEK_ T(0.003)KECS(0.997)VEK T(-24.59)KECS(24.59)VEK 0 0 1 1 Q05519 Q05519 Q05519 SRSF11 Serine/arginine-rich splicing factor 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 583.314392089844 3 354.150869 1059.43078 40451.6162702394 0.929 0.00032901 647080 229.16 647080 229.16 583.313753300241 37.226 0.4814 37.226 36.895 37.376 0 63 18 5 0.962021170173515 0.0209849090833928 0.488786893495552 0.0015261 1 8379 99.531 49.247 2 184300000 90171 102270 86561 93114 109170 82358 116360 105400 103590 3899 85311 96559 87659 95993 109550 83328 117750 104950 102760 6110.8 1 1 1 1 1 1 1 1 1 1 5408 870 4758 5075 6012 6012 1414 TKGSPRTSPK 10 2 Phospho (STY) _TKGS(ph)PRTS(ph)PK_ T(0.436)KGS(0.55)PRT(0.171)S(0.844)PK T(-1.32)KGS(1.32)PRT(-7.62)S(7.62)PK 0 0 2 2 Q6P2E9 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.344116210938 3 406.847499 1217.52067 38767.8529413509 2.8121 0.0011441 563260 229.16 563270 229.16 636.01021923545 30.202 1.3746 30.202 29.835 31.21 0 102 45 3 0.38620739317605 0.00181482043974205 0.0838453098184818 0.035149 1 6696 50.806 17.86 6 58034000 25680 22050 27157 21036 20421 25130 26003 23373 23994 3792.4 24305 20824 27188 21727 21198 24991 26145 23627 23760 4111.9 1 1 1 1 1 1 1 1 1 1 5409 1258 4759 5076 6013 6013 2235;2236 TKPPRPDSPATTPNISVK 18 Phospho (STY) _TKPPRPDS(ph)PATTPNISVK_ T(0.007)KPPRPDS(0.992)PAT(0.001)TPNISVK T(-21.83)KPPRPDS(21.83)PAT(-29.43)T(-63.54)PNIS(-146.76)VK 0 0 1 2 P32519 P32519 P32519 ELF1 ETS-related transcription factor Elf-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.130432128906 4 497.256853 1984.99831 38178.2648345821 2.4047 0.0011958 345640 171.87 345640 171.87 669.379575180133 53.607 1.1244 53.607 53.206 54.331 0 168 37 6 0.92013411038581 0.00429456898800143 0.0474185805451217 1.1728E-11 2 12444 208.46 185.36 5 139410000 54129 20189 54769 18516 22492 55226 22251 32186 18993 6785.2 51222 19063 54716 19704 24724 53441 22572 33383 18879 7134 2 2 2 2 2 2 2 2 2 2 5410 528 4760 5077 6014;6015 6015 856 TKPTQAAGPSSPQKPPTPEETK 22 2 Phospho (STY) _TKPTQAAGPSS(ph)PQKPPT(ph)PEETK_ TKPT(0.001)QAAGPS(0.163)S(0.836)PQKPPT(1)PEETK T(-44.33)KPT(-28.8)QAAGPS(-7.11)S(7.11)PQKPPT(36.61)PEET(-36.61)K 0 0 2 2 P18887 P18887 P18887 XRCC1 DNA repair protein XRCC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.446533203125 4 610.031652 2436.0975 34632.1845682961 2.0767 0.0012668 375660 229.16 375660 229.16 839.445200786453 46.921 0.54627 46.921 46.632 47.178 0 76 18 5 0.970626480179687 0.00439896612383594 0.0188701736844435 4.9796E-08 1 10841 151.37 134.7 15 32696000 14287 13080 15132 13925 20067 16716 20356 20459 17077 82346 13522 12361 15249 14291 20073 16833 20617 22858 16989 78012 1 1 1 1 1 1 1 1 1 1 5411 435 4761 5078 6016 6016 709;4414 TKSTGGAPTFNVTVTK 16 Phospho (STY) _TKS(ph)TGGAPTFNVTVTK_ T(0.192)KS(0.797)T(0.011)GGAPTFNVTVTK T(-6.19)KS(6.19)T(-18.45)GGAPT(-52.25)FNVT(-90.83)VT(-113.02)K 0 0 1 1 P07737 P07737 P07737 PFN1 Profilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.111938476563 3 563.613349 1687.81822 34764.2602739802 2.5068 0.0014129 406590 229.16 406600 229.16 793.110746586167 68.576 0.40106 68.576 68.3 68.701 0 38 13 4 0.715057498931655 0.00290512226147101 0.022633048232492 4.5381E-07 1 16100 147.87 120.2 6 14686000 15157 22834 14425 24345 17640 16401 18351 19027 25774 18653 14340 21579 14608 24777 17728 16862 18849 19546 25116 18005 1 1 1 1 1 1 1 1 1 1 5412 321 4762 5079 6017 6017 524 TLDPLVNTSSLIMR 14 Oxidation (M),2 Phospho (STY) _TLDPLVNTS(ph)S(ph)LIM(ox)R_ TLDPLVNTSSLIM(1)R T(0.097)LDPLVNT(0.428)S(0.534)S(0.941)LIMR TLDPLVNTSSLIM(76.07)R T(-8.03)LDPLVNT(-1.09)S(1.09)S(11.03)LIMR 0 1 2 0 Q9UPW5 Q9UPW5 Q9UPW5 AGTPBP1 Cytosolic carboxypeptidase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 982.9765625 2 868.390503 1734.76645 31461.1781411038 1.6454 0.0014288 131950 114.58 131950 114.59 982.974690997498 72.461 2.8713 72.461 72.047 74.918 1.4211E-14 323 98 5 0.989315665006576 0.00168761846015777 0.0586990286084075 0.010153 2 17139 76.073 38.479 6 113770000 28892 24236 30527 22748 25310 30569 22049 26639 23286 38702 27345 22887 30575 23574 25948 30316 22635 28039 22924 37059 2 2 2 2 2 2 2 2 2 2 5413 2221 4763 5080 6018;6019 6019 235 4021;4022 TLDSGTSEIVKSPR 14 Phospho (STY) _TLDSGTSEIVKS(ph)PR_ TLDSGTSEIVKS(1)PR T(-115.41)LDS(-106.81)GT(-90.12)S(-78.48)EIVKS(78.48)PR 0 0 1 1 Q9H501 Q9H501 Q9H501 ESF1 ESF1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.698669433594 3 523.922182 1568.74472 38230.1758812645 0.99763 0.00052268 291600 152.78 291600 152.78 676.697681600645 54.563 0.71858 54.563 54.178 54.896 7.1054E-15 84 24 4 0.967712361684423 0.00264228765836146 0.0152789066160892 1.8778E-10 1 12691 178.72 153.8 5 129090000 30664 32896 30665 32949 19167 31789 19187 28371 36514 3912.6 29016 31076 30737 33809 20146 31880 20004 28708 35293 4340.7 1 1 1 1 1 1 1 1 1 1 5414 1942 4764 5081 6020 6020 3519 TLEEDEEELFK 11 Unmodified _TLEEDEEELFK_ 0 0 0 0 P43487 P43487 P43487 RANBP1 Ran-specific GTPase-activating protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 920.988220214844 2 691.322105 1380.62966 32744.4000213947 2.4557 0.0016977 331490 229.16 331490 229.16 920.485114581844 90.125 0.75698 90.125 89.69 90.447 0 89 25 5 0.533078214554328 0.0062527794522302 0.302402426169578 1.7186E-09 1 20979 182.65 129.17 1 64935000 31009 105480 34988 104730 34426 38679 36301 65169 119280 329920 29357 99644 34999 106520 35074 42671 39133 74284 114180 312170 1 1 1 1 1 1 1 1 1 1 5415 599 4765 5082 6021 6021 TLGMAEEDEEE 11 Unmodified _TLGMAEEDEEE_ 0 0 0 0 Q13505 Q13505 Q13505 MTX1 Metaxin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.330261230469 2 626.747915 1251.48128 36704.8875267271 1.9773 0.0012393 182820 114.58 182820 114.58 741.328794419729 57.428 0.45669 57.428 57.19 57.646 7.1054E-15 42 15 4 0.869388488095631 0.00198329977566603 0.104569799290969 3.1454E-06 1 13432 150.05 132.67 1 17984000 15144 19667 17754 19706 17970 17077 16086 17954 20443 13747 14340 18579 17726 20189 18201 17271 16584 18390 19986 13360 1 1 1 1 1 1 1 1 1 1 5416 961 4766 5083 6022 6022 TLGTPTQPGSTPR 13 Phospho (STY) _TLGT(ph)PTQPGSTPR_ T(0.112)LGT(0.888)PTQPGSTPR T(-8.97)LGT(8.97)PT(-46.79)QPGS(-97.36)T(-107.37)PR 0 0 1 0 Q8NFH5 Q8NFH5 Q8NFH5 NUP35 Nucleoporin NUP53 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.410522460938 2 696.829581 1391.64461 34935.6987389628 1.9313 0.0013458 164430 114.58 164430 114.58 811.409822099119 41.84 0.45659 41.84 41.597 42.054 0 33 15 3 0.954507768526663 0.000803860195485725 0.0123409404642638 1.4564E-10 1 9544 195.36 143.36 5 24365000 15753 24746 16272 25486 17077 15918 17519 19595 25764 6858.8 14908 23381 16365 25969 17296 16442 18037 19720 25071 6911.8 1 1 1 1 1 1 1 1 1 1 5417 1523 4767 5084 6023 6023 4693 TLHCEGTEINSDDEQESK 18 Phospho (STY) _TLHCEGTEINS(ph)DDEQESK_ TLHCEGTEINS(1)DDEQESK T(-146.43)LHCEGT(-84.94)EINS(84.94)DDEQES(-154.36)K 0 0 1 0 Q9BPX3 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.732727050781 3 724.619339 2170.83619 32575.3566434552 1.5589 0.0011296 210840 152.78 210840 152.78 877.729337348084 43.555 1.043 43.555 43.272 44.315 0 76 35 4 0.951106802627033 0.00127440430136308 0.00322742156313032 2.2427E-31 1 9966 305.58 273.19 4 57246000 16778 15567 17612 15679 17665 17175 17832 18274 16265 19382 15880 14706 17688 16116 17924 17199 18101 18871 16115 18673 1 1 1 1 1 1 1 1 1 1 5418 1799 4768 5085 6024 6024 3307 TLHCEGTEINSDDEQESKEVEETATAK 27 Phospho (STY) _TLHCEGTEINS(ph)DDEQESKEVEETATAK_ TLHCEGTEINS(1)DDEQESKEVEETATAK T(-142.47)LHCEGT(-74.08)EINS(74.08)DDEQES(-160.79)KEVEET(-285.01)AT(-312.54)AK 0 0 1 1 Q9BPX3 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 955.706420898438 4 783.331508 3129.29693 31811.7652571747 1.435 0.001124 219410 171.87 219410 171.87 955.45502088928 61.614 1.1009 61.614 61.391 62.492 0 125 37 5 0.977213928520031 0.0042526484473703 0.0763590847141246 2.6618E-82 2 14425 440.62 413.29 6 133500000 9168.4 7570.9 8112.3 7115.9 6206.3 7383 8033.4 10667 9125.7 122060 8671.7 7149.4 8209.5 7338.5 6437.6 7659.5 8119.5 14251 8958 115180 2 2 2 2 2 2 2 2 2 2 5419 1799 4769 5086 6025;6026 6025 3307 TLHSPPLQLQQR 12 Phospho (STY) _TLHS(ph)PPLQLQQR_ T(0.004)LHS(0.996)PPLQLQQR T(-23.6)LHS(23.6)PPLQLQQR 0 0 1 0 Q6PFW1 Q6PFW1 Q6PFW1 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 576.312622070313 3 499.923969 1496.75008 42589.6167768184 1.4882 0.00074397 152800 76.388 152800 76.388 576.31139674747 57.295 0.92146 57.295 56.783 57.704 7.1054E-15 91 31 4 0.842940586160479 0.00248808695884985 0.0195279316988692 0.00014695 1 13345 102.64 76.989 2 29633000 8052.4 9907.6 9062 8707.5 10769 9562.8 9862.5 8943.6 10057 5937.8 7623.4 9352.5 9086 9027.6 10815 9550.5 10088 9174 9914.6 5798.2 1 1 1 1 1 1 1 1 1 1 5420 1266 4770 5087 6027 6027 2244 TLIPSPPPRPK 11 Phospho (STY) _TLIPS(ph)PPPRPK_ TLIPS(1)PPPRPK T(-58.44)LIPS(58.44)PPPRPK 0 0 1 1 Q9NZ52 Q9NZ52 Q9NZ52 GGA3 ADP-ribosylation factor-binding protein GGA3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 581.011352539063 3 428.235484 1281.68462 40549.8447426157 2.0217 0.00086576 356760 152.78 356760 152.78 581.010586621157 63.491 1.5664 63.491 62.79 64.356 0 181 53 4 0.895363984189715 0.0027410237906799 0.0390674330757147 0.00011284 2 15015 114.56 90.22 2 54703000 19653 24630 19200 27133 20508 21503 21151 22374 26577 5102.6 18595 23281 19377 27616 20749 21825 21647 22562 25993 5322.6 2 2 2 2 2 2 2 2 2 2 5421 2079 4771 5088 6028;6029 6029 3770 TLKPTYRTPER 11 Phospho (STY) _TLKPTYRT(ph)PER_ TLKPT(0.005)Y(0.003)RT(0.992)PER T(-37.98)LKPT(-22.64)Y(-25.28)RT(22.64)PER 0 0 1 2 Q5H9B9;Q9NSY1 Q5H9B9 Q5H9B9 BMP2KL;BMP2K Putative BMP-2-inducible kinase-like protein;BMP-2-inducible protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 475.767791748047 4 361.185434 1440.71263 46189.5780121074 0.8159 0.00029469 317240 114.58 317240 114.58 475.766974240919 41.811 0.51359 41.811 41.54 42.054 0 49 17 4 0.842795019243399 0.00200103858100245 0.0225395148978187 0.014187 1 9562 66.331 52.652 4 18762000 9512.1 19890 10374 21942 12427 10251 12170 14961 22773 1407.1 9004.1 18801 10421 22216 12496 10859 12690 14867 22020 1671.2 1 1 1 1 1 1 1 1 1 1 5422 1162 4772 5089 6030 6030 4597 TLLDPGRFSK 10 Phospho (STY) _TLLDPGRFS(ph)K_ TLLDPGRFS(1)K T(-39.25)LLDPGRFS(39.25)K 0 0 1 1 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 557.979614257813 3 405.204073 1212.59039 42468.7203441081 2.1497 0.00087108 377030 152.77 377030 152.78 557.978997137536 74.142 0.77827 74.142 73.701 74.479 0 61 26 3 0.909721747067639 0.00503087578277882 0.136714159033356 0.010586 1 17407 67.115 31.47 2 24918000 16361 9911.6 17926 8814.2 12717 17353 12139 12878 10055 3453.5 15487 9356.9 17895 9254.3 13203 16963 12327 13195 10010 3549.9 1 1 1 1 1 1 1 1 1 1 5423 57 4773 5090 6031 6031 88 TLLEKASQEGR 11 Phospho (STY) _TLLEKAS(ph)QEGR_ T(0.002)LLEKAS(0.998)QEGR T(-26.85)LLEKAS(26.85)QEGR 0 0 1 1 Q86WJ1 Q86WJ1 Q86WJ1 CHD1L Chromodomain-helicase-DNA-binding protein 1-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.658447265625 3 437.881658 1310.62315 41376.2397471507 1.8385 0.00080505 348900 152.77 348900 152.78 590.657312473685 56.778 0.4438 56.778 56.541 56.985 0 47 14 5 0.957294751061078 0.00134495406715361 0.0221161279927416 0.010767 1 13279 67.326 47.219 2 15773000 7638.5 6420.2 7841.5 6982 18795 7013.8 17773 9797.9 6487.9 2777.1 7228.7 6068.2 8016.4 7135.1 18402 7068.9 17831 9803.7 6880.3 2841.7 1 1 1 1 1 1 1 1 1 1 5424 1390 4774 5091 6032 6032 2529 TLLEQLDDDQ 10 Unmodified _TLLEQLDDDQ_ 0 0 0 0 O75400 O75400 O75400 PRPF40A Pre-mRNA-processing factor 40 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.865783691406 2 595.282783 1188.55101 37463.660626076 1.4641 0.00087155 192480 114.58 192480 114.58 709.864538796727 86.56 0.68934 86.56 86.217 86.907 0 75 23 4 0.995726437242392 0.00308064427225964 0.0928655135378503 3.5765E-21 1 20171 285.32 262.49 1 58240000 10367 13820 11477 13442 11079 10985 12123 12485 17052 9512.5 9813.6 13053 11490 13785 11286 11157 12425 12752 16617 9246.1 1 1 1 1 1 1 1 1 1 1 5425 184 4775 5092 6033 6033 TLLFFTALMITVPIGLYFTTKSYIFEGALGMSNR 34 Unmodified _TLLFFTALMITVPIGLYFTTKSYIFEGALGMSNR_ 0 0 0 1 Q3ZAQ7 Q3ZAQ7 Q3ZAQ7 VMA21 Vacuolar ATPase assembly integral membrane protein VMA21 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1425.45532226563 3 1272.67668 3815.0082 NaN NaN NaN NaN NaN NaN NaN NaN 7.9013 1 7.9013 7.4013 8.4013 0 NaN NaN NaN 0.05531 1 1782 1.4727 0.1014 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5426 1133 4776 5093 6034 6034 TLLSESSSQSSKSPSLSSK 19 Phospho (STY) _TLLSESSSQSSKS(ph)PSLSSK_ TLLSESSSQSS(0.001)KS(0.998)PSLSSK T(-163.33)LLS(-122.74)ES(-88.63)S(-84.69)S(-69.66)QS(-47.86)S(-28.34)KS(28.34)PS(-41.37)LS(-93.21)S(-88.63)K 0 0 1 1 Q9UPU5 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 903.151794433594 3 673.98758 2018.94091 32847.0132678262 2.5045 0.001688 340010 229.16 340010 229.16 903.484757018676 63.386 0.61117 63.386 63.081 63.692 7.1054E-15 76 20 5 0.919747861475581 0.00335376957613613 0.0815872452198697 8.331E-23 1 14855 258.05 236.43 11 55907000 13255 16737 13699 16050 22952 14659 30019 20790 19033 10267 12545 15807 13895 16499 22835 14852 29916 20926 19246 10149 1 1 1 1 1 1 1 1 1 1 5427 2220 4777 5094 6035 6035 4018 TLLSESSSQSSKSPSLSSK 19 Phospho (STY) _TLLSESSSQSSKS(ph)PSLSSK_ TLLSESSSQSS(0.003)KS(0.982)PS(0.014)LSSK T(-157.69)LLS(-143.14)ES(-122.59)S(-92.6)S(-72.43)QS(-33.75)S(-25.14)KS(18.4)PS(-18.4)LS(-54.86)S(-60.84)K 0 0 1 1 Q9UPU5 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.866882324219 4 505.742504 2018.94091 37375.5285301593 2.2006 0.0011129 339840 171.87 339840 171.87 677.865110806477 63.394 0.66928 63.394 63.081 63.75 -7.1054E-15 79 22 5 0.803082359756094 0.00666600106831931 0.0791900670296548 1.1175E-22 1 14861 255.99 233.12 11 54620000 8746.4 11054 9414.2 11134 13543 8040.7 16263 12926 11738 3732.5 8278.9 10443 9496.8 11378 13533 8265.9 16300 12889 11774 3813.8 1 1 1 1 1 1 1 1 1 1 5428 2220 4777 5094 6036 6036 4018 TLNAETPKSSPLPAK 15 Phospho (STY) _TLNAETPKSS(ph)PLPAK_ T(0.011)LNAET(0.032)PKS(0.231)S(0.726)PLPAK T(-18.28)LNAET(-13.61)PKS(-4.97)S(4.97)PLPAK 0 0 1 1 Q7L2J0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.776672363281 3 545.278077 1632.8124 36796.8936816122 2.0895 0.0011393 420270 229.16 420270 229.16 774.442799246633 58.712 0.52675 58.712 58.433 58.96 0 60 17 5 0.739831854060414 0.00283009945419604 0.0343423693564113 0.01075 1 13730 71.735 56.58 4 49962000 28405 34292 29385 34073 27500 27660 32294 33152 38984 12238 26882 32393 29519 34895 28093 28103 32825 33410 38182 12291 1 1 1 1 1 1 1 1 1 1 5429 1317 4778 5095 6037 6037 2358 TLNDELEIIEGMK 13 Oxidation (M) _TLNDELEIIEGM(ox)K_ TLNDELEIIEGM(1)K TLNDELEIIEGM(62.38)K 0 1 0 0 P10809 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.365478515625 3 507.588601 1519.74397 40378.9261437898 2.2928 0.0011638 300980 152.78 300980 152.78 660.364197891354 93.146 0.33167 93.146 93 93.332 1.4211E-14 25 10 3 0.956804328207265 0.000748457925645172 0.0155843029583783 0.014323 1 21682 62.377 34.209 1 4501200 3777.5 3685.7 3293.9 3805.5 3698.5 3755.8 4771.7 4135.7 4799.5 9165.7 3572.7 3482.5 3351.5 3899.3 3744.6 3788.9 4806.4 4409.9 4734.5 8726.3 1 1 1 1 1 1 1 1 1 1 5430 357 4779 5096 6038 6038 43 TLNMTTSPEEK 11 Oxidation (M),Phospho (STY) _TLNM(ox)TTS(ph)PEEK_ TLNM(1)TTSPEEK T(0.009)LNMT(0.039)T(0.21)S(0.742)PEEK TLNM(41.38)TTSPEEK T(-19.18)LNMT(-12.83)T(-5.49)S(5.49)PEEK 0 1 1 0 P49915 P49915 P49915 GMPS GMP synthase [glutamine-hydrolyzing] MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 602.634521484375 3 449.523031 1345.54726 38922.8953188401 1.8381 0.00082628 339860 152.78 339860 152.78 602.298929596622 44.941 0.63784 44.941 44.569 45.207 0 67 21 4 0.88276143732441 0.00208736551104527 0.0149409088352838 0.044524 1 10307 41.378 18.499 4 13039000 11382 14162 12058 12860 11573 10447 11983 12399 14051 3480.8 10773 13371 12098 13245 11781 10610 12234 12466 13776 3564.5 1 1 1 1 1 1 1 1 1 1 5431 659 4780 5097 6039 6039 85 1112;4474 TLNMTTSPEEK 11 Phospho (STY) _TLNMTT(ph)SPEEK_ TLNMT(0.013)T(0.739)S(0.248)PEEK T(-71.3)LNMT(-17.69)T(4.73)S(-4.73)PEEK 0 0 1 0 P49915 P49915 P49915 GMPS GMP synthase [glutamine-hydrolyzing] MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.945983886719 2 665.78345 1329.55235 33025.0204187561 1.751 0.0011658 344200 229.16 344200 229.16 894.946856747447 59.921 0.80803 59.921 59.621 60.429 0 94 27 4 0.988189737618171 0.00192157833287652 0.0211087841764465 6.7725E-15 1 14012 233.97 167.47 4 67422000 22357 47837 22194 42966 20154 19470 20303 28985 49825 10690 21155 45162 22332 44035 20603 20704 21468 29028 47910 10737 1 1 1 1 1 1 1 1 1 1 5432 659 4780 5098 6040 6040 1112;4474 TLPEPVGTQVSMEEIQNESACGLDVGECENR 31 Phospho (STY) _TLPEPVGTQVS(ph)MEEIQNESACGLDVGECENR_ TLPEPVGT(0.008)QVS(0.992)MEEIQNESACGLDVGECENR T(-65.92)LPEPVGT(-21.2)QVS(21.2)MEEIQNES(-65.53)ACGLDVGECENR 0 0 1 0 Q9ULV3 Q9ULV3 Q9ULV3 CIZ1 Cip1-interacting zinc finger protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 940.419982910156 4 882.879571 3527.48918 32982.3775439792 1.6718 0.001476 64889 57.289 64891 57.291 940.419662368608 87.166 0.53059 87.166 86.878 87.408 -1.4211E-14 39 17 4 0.970874705865915 0.000772795440338449 0.0128264219202944 6.8318E-08 4 20357 156.65 143.06 4 21909000 14813 19539 15390 18561 17014 15611 18047 19028 19764 104970 14019 18453 15486 19070 17186 16019 18367 22117 19428 99280 4 4 4 4 4 4 4 4 4 4 5433 2191 4781 5099 6041;6042;6043;6044 6042 3971 TLPIRSPK 8 Phospho (STY) _TLPIRS(ph)PK_ TLPIRS(1)PK T(-35.66)LPIRS(35.66)PK 0 0 1 1 Q5UIP0 Q5UIP0 Q5UIP0 RIF1 Telomere-associated protein RIF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 484.292419433594 3 331.18272 990.526332 45416.5347785769 0.44558 0.00014757 461300 152.78 461300 152.78 483.958043924174 53.275 0.61883 53.275 53.066 53.685 0 49 20 4 0.987740978452578 0.00235775956806 0.0183797216163617 0.015439 1 12414 62.104 33.886 2 28156000 17772 25110 17772 27129 10845 17541 9682.6 19760 28492 1818.1 16817 23732 17808 27578 11415 18041 10427 19789 27315 2169.3 1 1 1 1 1 1 1 1 1 1 5434 1197 4782 5100 6045 6045 2095 TLPSGSPRPGQLERPTSLALDSR 23 Phospho (STY) _TLPSGS(ph)PRPGQLERPTSLALDSR_ T(0.003)LPS(0.185)GS(0.643)PRPGQLERPT(0.067)S(0.1)LALDS(0.001)R T(-22.88)LPS(-5.42)GS(5.42)PRPGQLERPT(-9.8)S(-8.06)LALDS(-26.35)R 0 0 1 2 Q13459 Q13459 Q13459 MYO9B Unconventional myosin-IXb MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 915.816223144531 3 839.093665 2514.25916 32706.3827251999 1.768 0.0014836 91036 76.387 91037 76.389 915.815338699339 63.439 0.55579 63.439 63.194 63.75 -7.1054E-15 61 18 4 0.927961309302221 0.00327184554635155 0.0185589352788414 0.0074776 1 14887 89.396 62.122 6 25866000 6164.4 7045.1 5883.3 8129.8 8553.8 6429.7 9202.3 7710.1 7007.1 9931.6 5832 6661.4 5974.3 8253.9 8529.9 6555.5 9275.9 7983.4 7007 9530.3 1 1 1 1 1 1 1 1 1 1 5435 958 4783 5101 6046 6046 1610 TLPSPIDAK 9 Phospho (STY) _TLPS(ph)PIDAK_ T(0.019)LPS(0.981)PIDAK T(-17.16)LPS(17.16)PIDAK 0 0 1 0 Q2KHR2 Q2KHR2 Q2KHR2 RFX7 DNA-binding protein RFX7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.417724609375 2 511.251915 1020.48928 36988.5456853353 3.405 0.0017408 448240 229.16 448240 229.16 740.415368447923 68.268 0.43299 68.268 68.066 68.499 0 29 14 3 0.89890929720161 0.0006768330412735 0.0191931813365912 0.00049953 1 16053 111.63 64.786 2 7864900 15060 10795 14132 10071 10566 15751 11345 12458 11033 9911.5 14247 10194 14241 10476 10944 15512 11503 12922 10899 9621.2 1 1 1 1 1 1 1 1 1 1 5436 1120 4784 5102 6047 6047 1950 TLQPPESPR 9 Phospho (STY) _TLQPPES(ph)PR_ TLQPPES(1)PR T(-63.87)LQPPES(63.87)PR 0 0 1 0 Q86UU1 Q86UU1 Q86UU1 PHLDB1 Pleckstrin homology-like domain family B member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.340515136719 2 552.757896 1103.50124 38150.8550853264 2.0215 0.0011174 207290 114.58 207290 114.58 667.339734518679 44.837 1.0082 44.837 44.257 45.266 0 65 34 2 0.984260663343938 0.000658985445885962 0.015808828098933 0.003594 1 10244 95.507 68.079 2 14420000 15968 19950 16696 20115 25140 16969 24668 21426 23076 11411 15112 18847 16873 20593 25005 17226 25089 21663 22836 11241 1 1 1 1 1 1 1 1 1 1 5437 1374 4785 5103 6048 6048 2489 TLQTDSIDSFETQRTPR 17 Phospho (STY) _TLQTDSIDSFETQRT(ph)PR_ TLQTDSIDSFETQRT(1)PR T(-225.14)LQT(-204.99)DS(-183.34)IDS(-125.25)FET(-57.25)QRT(57.25)PR 0 0 1 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.7080078125 3 692.319552 2073.93683 35484.345172611 2.0842 0.0014429 110340 76.387 110340 76.389 769.041044741086 63.875 1.395 63.875 63.343 64.738 0 180 47 7 0.912402984888677 0.00604150191626307 0.0747143050132976 9.4522E-23 1 14947 277.79 249.38 6 773370000 26700 12370 28494 10556 10594 26152 10161 16378 11041 10373 25272 11675 28369 11200 11803 25414 10388 17119 10857 10147 1 1 1 1 1 1 1 1 1 1 5438 310 4786 5104 6049 6049 4371 TLSADASVNTLPVVVSR 17 Phospho (STY) _TLS(ph)ADASVNTLPVVVSR_ T(0.038)LS(0.962)ADASVNTLPVVVSR T(-14.02)LS(14.02)ADAS(-43.3)VNT(-75.57)LPVVVS(-149.09)R 0 0 1 0 Q92615 Q92615 Q92615 LARP4B La-related protein 4B MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1019.54162597656 2 904.961323 1807.90809 NaN NaN NaN NaN NaN NaN NaN NaN 83.989 1 83.989 83.489 84.489 0 NaN NaN NaN 1.0193E-13 1 19630 195.96 166.49 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5439 1609 4787 5105 6050 6050 2967 TLSDVEDQKELASPVSPELR 20 Phospho (STY) _TLSDVEDQKELASPVS(ph)PELR_ TLSDVEDQKELAS(0.002)PVS(0.998)PELR T(-115.78)LS(-95.11)DVEDQKELAS(-26.96)PVS(26.96)PELR 0 0 1 1 Q5T4S7 Q5T4S7 Q5T4S7 UBR4 E3 ubiquitin-protein ligase UBR4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 918.147094726563 3 765.036822 2292.08864 32561.7623920512 1.5022 0.0011492 199700 152.78 199700 152.78 918.146061201103 75.806 0.46278 75.806 75.572 76.035 1.4211E-14 46 15 4 0.789024602186517 0.00354732799169406 0.026815989326502 1.06E-07 1 17787 151.41 123.92 4 28536000 12237 20902 10478 21778 16301 12151 18112 18632 24780 23966 11573 19750 10726 22153 16231 12736 18532 19160 24167 22998 1 1 1 1 1 1 1 1 1 1 5440 1184 4788 5106 6051 6051 2072 TLSKEEETKK 10 Phospho (STY) _TLS(ph)KEEETKK_ T(0.022)LS(0.978)KEEETKK T(-16.5)LS(16.5)KEEET(-43.48)KK 0 0 1 2 P84098 P84098 P84098 RPL19 60S ribosomal protein L19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 730.760314941406 3 424.874281 1271.60101 36602.7835944614 3.4255 0.0014554 719160 305.55 719160 305.55 730.759727860771 45.922 0.37767 45.922 45.731 46.109 0 39 12 4 0.951780197408973 0.00288097036689313 0.0524894492813874 0.017846 1 10590 65.805 44.554 3 21091000 38251 22505 42493 21531 18358 44363 15928 28483 26931 8823.8 36212 21254 42244 22534 20030 43266 16632 29452 26106 8967.9 1 1 1 1 1 1 1 1 1 1 5441 812 4789 5107 6052 6052 1297 TLSMDKGF 8 Phospho (STY) _TLS(ph)MDKGF_ T(0.291)LS(0.709)MDKGF T(-3.87)LS(3.87)MDKGF 0 0 1 1 P17858 P17858 P17858 PFKL ATP-dependent 6-phosphofructokinase, liver type MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.868713378906 2 489.703744 977.392934 36099.5741300793 2.583 0.0012649 467960 229.16 467970 229.16 718.866940736884 79.039 0.89427 79.039 78.722 79.617 0 56 30 2 0.939506616300828 0.00184729638832395 0.0632406328242886 0.015195 1 18494 73.655 48.8 2 70387000 34573 31753 36892 30314 45999 34431 54237 41150 31048 8208.3 32724 29988 37142 31280 46237 34428 54178 41263 31619 8681.5 1 1 1 1 1 1 1 1 1 1 5442 422 4790 5108 6053 6053 681 TLSMIEEEIR 10 Oxidation (M),Phospho (STY) _TLS(ph)M(ox)IEEEIR_ TLSM(1)IEEEIR T(0.036)LS(0.964)MIEEEIR TLSM(71.22)IEEEIR T(-14.22)LS(14.22)MIEEEIR 0 1 1 0 Q9Y2D5 Q9Y2D5 Q9Y2D5 AKAP2 A-kinase anchor protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.376586914063 2 658.793818 1315.57308 34821.1332804415 2.1353 0.0014067 173930 114.58 173930 114.58 773.374982294086 92.801 0.72393 92.801 92.396 93.12 0 60 24 3 0.699260252190368 0.000976055565964576 0.0219109245475501 0.013706 2 21587 71.219 51.607 2 9592800 19815 10960 22051 11201 9666.3 22492 10621 15026 10928 36165 18758 10355 21926 11668 10554 22016 10774 16451 10769 34401 2 2 2 2 2 2 2 2 2 2 5443 2242 4791 5109 6054;6055 6054 245 4138 TLSMIEEEIR 10 Phospho (STY) _TLS(ph)MIEEEIR_ T(0.01)LS(0.99)MIEEEIR T(-20.07)LS(20.07)MIEEEIR 0 0 1 0 Q9Y2D5 Q9Y2D5 Q9Y2D5 AKAP2 A-kinase anchor protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 765.381469726563 2 650.796361 1299.57817 35263.0985840203 1.7331 0.0011279 176060 114.58 176070 114.58 765.378288301312 99.567 0.39773 99.567 99.382 99.78 0 33 13 4 0.983510234404971 0.00302460762980992 0.0860217557525886 3.1017E-06 1 23139 147.24 108.24 2 65653000 80273 20664 76200 21670 13779 82668 18487 38936 24327 64010 75944 19526 76208 23168 17741 79712 18752 42679 23756 61174 1 1 1 1 1 1 1 1 1 1 5444 2242 4791 5110 6056 6056 4138 TLSSPSNRPSGETSVPPPPAVGR 23 Phospho (STY) _TLSS(ph)PSNRPSGETSVPPPPAVGR_ T(0.026)LS(0.118)S(0.854)PS(0.002)NRPSGETSVPPPPAVGR T(-15.16)LS(-8.6)S(8.6)PS(-25.65)NRPS(-62.25)GET(-89.45)S(-94.11)VPPPPAVGR 0 0 1 1 Q8WWM7 Q8WWM7 Q8WWM7 ATXN2L Ataxin-2-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.107788085938 3 790.719827 2369.13765 33527.3287531679 0.74192 0.00058665 96606 76.388 96606 76.389 867.44215719617 51.815 0.72376 51.815 51.459 52.183 0 70 24 4 0.968148086506039 0.00351904588019846 0.0153381290813113 7.7198E-18 1 12068 231.68 201.58 7 53796000 9913.5 16793 10915 15703 12038 11924 12080 11548 18667 11683 9384.5 15857 10947 16130 12157 12138 12474 11950 18139 11268 1 1 1 1 1 1 1 1 1 1 5445 1576 4792 5111 6057 6057 2900 TLSVAAAFNEDEDSEPEEMPPEAK 24 Oxidation (M),Phospho (STY) _TLSVAAAFNEDEDS(ph)EPEEM(ox)PPEAK_ TLSVAAAFNEDEDSEPEEM(1)PPEAK TLSVAAAFNEDEDS(1)EPEEMPPEAK TLSVAAAFNEDEDSEPEEM(113.91)PPEAK T(-84.77)LS(-85)VAAAFNEDEDS(84.77)EPEEMPPEAK 0 1 1 0 Q8WW12 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.1162109375 4 676.282027 2701.099 34698.1587162235 1.7342 0.0011728 169430 114.58 169430 114.58 791.113730654468 83.47 3.9652 83.47 82.683 86.648 1.4211E-14 402 137 5 0.944517160257037 0.00535487905648968 0.0752626923460009 6.1386E-05 3 19614 113.91 103.4 3 37501000 12402 11022 11732 12369 11486 12542 13801 13452 14704 96942 11733 10420 11854 12621 11704 12758 13962 16379 14470 91594 3 3 3 3 3 3 3 3 3 3 5446 1574 4793 5112 6058;6059;6060 6059 184 2888 TLSVAAAFNEDEDSEPEEMPPEAK 24 Oxidation (M),Phospho (STY) _TLSVAAAFNEDEDS(ph)EPEEM(ox)PPEAK_ TLSVAAAFNEDEDSEPEEM(1)PPEAK TLSVAAAFNEDEDS(1)EPEEMPPEAK TLSVAAAFNEDEDSEPEEM(161.39)PPEAK T(-99.48)LS(-92.95)VAAAFNEDEDS(92.95)EPEEMPPEAK 0 1 1 0 Q8WW12 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.48364257813 3 901.373611 2701.099 30201.7454815529 1.5693 0.0014146 169490 152.77 169490 152.77 1054.48234705885 83.383 3.1591 83.383 82.655 85.814 1.4211E-14 421 109 5 0.698783628324021 0.00208057576078525 0.0146737732976359 4.4609E-08 1 19965 161.39 133.17 3 30078000 2206.2 2135 2144.7 2190.4 2417.8 1736.1 1775.3 3756.6 2180.4 41974 2087.4 2017.1 2165.2 2238.3 2428.8 1864.9 1849 4954.6 2134.2 39610 1 1 1 1 1 1 1 1 1 1 5447 1574 4793 5112 6061 6061 184 2888 TLSVAAAFNEDEDSEPEEMPPEAK 24 Oxidation (M),Phospho (STY) _TLSVAAAFNEDEDS(ph)EPEEM(ox)PPEAK_ TLSVAAAFNEDEDSEPEEM(1)PPEAK TLSVAAAFNEDEDS(1)EPEEMPPEAK TLSVAAAFNEDEDSEPEEM(101.49)PPEAK T(-64.44)LS(-64.73)VAAAFNEDEDS(64.44)EPEEMPPEAK 0 1 1 0 Q8WW12 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.115905761719 4 676.282027 2701.099 35829.366507152 1.9384 0.0013109 169430 114.58 169430 114.58 791.36648894543 88.658 0.95252 88.658 88.311 89.263 0 77 32 4 0.598508863136703 0.000830440057390439 0.0143517381278436 9.2079E-05 1 20747 101.49 86.449 3 7960800 2126.5 2902 3265.3 3527.9 2955.5 2243.8 3748.5 3631 3159 18094 2016.5 2745 3220.2 3563.5 3028.2 2357.8 3761.5 4133.6 3142 17122 1 1 1 1 1 1 1 1 1 1 5448 1574 4793 5112 6062 6062 184 2888 TLSVAAAFNEDEDSEPEEMPPEAK 24 Oxidation (M),Phospho (STY) _TLSVAAAFNEDEDS(ph)EPEEM(ox)PPEAK_ TLSVAAAFNEDEDSEPEEM(1)PPEAK TLSVAAAFNEDEDS(1)EPEEMPPEAK TLSVAAAFNEDEDSEPEEM(102.57)PPEAK T(-66.92)LS(-67.19)VAAAFNEDEDS(66.92)EPEEMPPEAK 0 1 1 0 Q8WW12 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1054.14636230469 3 901.373611 2701.099 NaN NaN NaN NaN NaN NaN NaN NaN 87.51 1 87.51 87.01 88.01 0 NaN NaN NaN 0.00029809 1 20420 102.57 81.251 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5449 1574 4793 5112 6063 6063 184 2888 TLSVAAAFNEDEDSEPEEMPPEAK 24 Phospho (STY) _TLSVAAAFNEDEDS(ph)EPEEMPPEAK_ TLSVAAAFNEDEDS(1)EPEEMPPEAK T(-81.37)LS(-81.74)VAAAFNEDEDS(81.37)EPEEMPPEAK 0 0 1 0 Q8WW12 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.118408203125 4 672.283299 2685.10409 35368.3269065489 1.6762 0.0011269 170440 114.58 170440 114.58 787.115307563055 89.324 1.9953 89.324 88.196 90.192 0 212 68 4 0.71928130277525 0.00110994019505229 0.00646185022451329 1.7E-06 3 20856 137.9 118.76 3 30697000 11378 10030 10977 12519 10533 11638 11173 12582 12857 101390 10765 9489 11072 12688 10726 11907 11388 15639 12615 95765 3 3 3 3 3 3 3 3 3 3 5450 1574 4793 5113 6064;6065;6066 6066 2888 TLSVAAAFNEDEDSEPEEMPPEAK 24 Phospho (STY) _TLSVAAAFNEDEDS(ph)EPEEMPPEAK_ TLSVAAAFNEDEDS(1)EPEEMPPEAK T(-71.36)LS(-71.71)VAAAFNEDEDS(71.36)EPEEMPPEAK 0 0 1 0 Q8WW12 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.867370605469 4 672.283299 2685.10409 35632.9539444418 1.9806 0.0013315 170440 114.58 170440 114.58 787.115912642601 92.486 0.94754 92.486 92.113 93.06 0 79 32 4 0.449938233483792 0.000872487491006561 0.0130673654595881 5.7096E-05 1 21560 110.75 95.5 3 7284000 2535.1 2775.9 2670.3 2936.3 2398.4 3180.6 2505.1 2755.6 2356.8 22546 2399.3 2623.2 2678 3009 2451.3 3214.3 2540.8 3459.9 2331.8 21293 1 1 1 1 1 1 1 1 1 1 5451 1574 4793 5113 6067 6067 2888 TLSVAAAFNEDEDSEPEEMPPEAK 24 Phospho (STY) _TLSVAAAFNEDEDS(ph)EPEEMPPEAK_ TLSVAAAFNEDEDS(1)EPEEMPPEAK T(-59.26)LS(-59.53)VAAAFNEDEDS(59.26)EPEEMPPEAK 0 0 1 0 Q8WW12 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.116088867188 4 672.283299 2685.10409 35921.4948255435 1.9342 0.0013003 170430 114.58 170440 114.58 787.363260410656 94.192 0.86234 94.192 93.965 94.827 0 39 29 2 0.381232082198476 0.000891361195450422 0.0571713067712826 0.004888 1 21949 87.439 64.23 3 7957500 2143.7 3010.1 2916 3407 3014.7 3329.4 2842.4 4521 3721.7 20963 2031.4 2845.8 2892.7 3472.7 3051.9 3395.1 2925.7 5120.3 3634.9 19844 1 1 1 1 1 1 1 1 1 1 5452 1574 4793 5113 6068 6068 2888 TLTAEEAEEEWER 13 Unmodified _TLTAEEAEEEWER_ 0 0 0 0 P35269 P35269 P35269 GTF2F1 General transcription factor IIF subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 911.441589355469 2 796.857374 1591.7002 32611.3949323521 1.5702 0.0012512 143790 114.58 143790 114.58 911.439996433168 68.955 0.38149 68.955 68.825 69.207 0 13 12 2 0.682164309995526 0.0002246536167848 0.00523673872254588 0.00075893 1 16197 130.44 102.23 1 7113400 11106 9303.5 11553 9324.3 9610.6 10003 10262 10995 9525.6 17081 10511 8788.8 11585 9583.5 9876.1 10041 10395 11505 9430.1 16338 1 1 1 1 1 1 1 1 1 1 5453 546 4794 5114 6069 6069 TLTDEVNSPDSDRR 14 Phospho (STY) _TLTDEVNS(ph)PDSDRR_ TLTDEVNS(1)PDSDRR T(-65.56)LT(-59.07)DEVNS(40.46)PDS(-40.46)DRR 0 0 1 1 Q8TAQ2 Q8TAQ2 Q8TAQ2 SMARCC2 SWI/SNF complex subunit SMARCC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.966735839844 3 562.243984 1683.71012 38999.4681859605 1.3567 0.00076282 135860 76.388 135860 76.388 638.631758378416 40.282 1.5054 40.282 39.979 41.484 0 136 51 4 0.957524385192013 0.00212942913351807 0.0196082796886908 5.1271E-05 1 9139 130.02 99.472 4 68103000 13839 17272 14007 17647 16618 14146 16252 15875 17026 3717 13096 16319 14126 18040 16706 14364 16582 15968 16766 3867.4 1 1 1 1 1 1 1 1 1 1 5454 1534 4795 5115 6070 6070 2821 TLTPPLRR 8 Phospho (STY) _TLT(ph)PPLRR_ T(0.127)LT(0.873)PPLRR T(-8.36)LT(8.36)PPLRR 0 0 1 1 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 421.577758789063 3 345.189986 1032.54813 48089.9021598211 0.40195 0.00013875 221290 76.388 221290 76.388 421.577589187888 49.575 1.5048 49.575 48.623 50.128 0 162 51 4 0.989354960505722 0.0124257491482753 0.268641017357478 0.012602 1 11532 93.096 72.194 2 72595000 44550 45507 41831 44479 33347 48789 38680 37638 48559 1075.3 42145 42983 42184 45802 34427 48574 39387 38218 47495 1883.6 1 1 1 1 1 1 1 1 1 1 5455 1183 4796 5116 6071 6071 4602 TLTRTSQETADVK 13 Phospho (STY) _T(ph)LTRTSQETADVK_ T(0.421)LT(0.269)RT(0.176)S(0.134)QETADVK T(1.94)LT(-1.94)RT(-3.78)S(-4.97)QET(-48.61)ADVK 0 0 1 1 Q8N1F7 Q8N1F7 Q8N1F7 NUP93 Nuclear pore complex protein Nup93 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.688110351563 3 510.578415 1528.71342 39805.7609075934 2.2509 0.0011493 299220 152.77 299220 152.78 663.686985012192 45.024 0.43682 45.024 44.829 45.266 0 33 14 3 0.905387572775169 0.00149031794025093 0.0238471336484717 0.024391 1 10371 74.12 50.288 5 13805000 15537 17630 16167 18617 23028 16885 22272 21522 18838 17114 14704 16660 16325 19027 22950 17092 22613 21924 18734 16613 1 1 1 1 1 1 1 1 1 1 5456 1453 4797 5117 6072 6072 4670;4671 TLVITSTPASPNR 13 Phospho (STY) _TLVITSTPAS(ph)PNR_ TLVITSTPAS(1)PNR T(-124.13)LVIT(-79.42)S(-59.91)T(-40.15)PAS(40.15)PNR 0 0 1 0 Q8TBN0 Q8TBN0 Q8TBN0 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.443969726563 2 718.860881 1435.70721 34640.2764688092 1.7678 0.0012708 159390 114.58 159400 114.58 833.443287243835 62.825 0.49509 62.825 62.555 63.05 7.1054E-15 42 16 3 0.831672495094636 0.0016551859911237 0.0390488746872977 5.7645E-16 1 14741 234.28 197.43 5 22171000 9312.2 25067 7373.7 28458 16405 7683.5 16641 18797 29599 23170 8804.5 23699 7647.4 28679 16130 8811.8 17282 19122 28655 22253 1 1 1 1 1 1 1 1 1 1 5457 1538 4798 5118 6073 6073 2826 TLVLSNLSYSATEETLQEVFEK 22 Unmodified _TLVLSNLSYSATEETLQEVFEK_ 0 0 0 0 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 987.539428710938 3 834.426765 2500.25847 31499.762328522 1.2859 0.001073 183090 152.77 183090 152.78 987.536249510205 101.77 0.16829 101.77 101.7 101.87 0 17 5 5 0.986648852722694 0.0167419357063418 0.284983810172484 4.823E-42 1 23958 327.06 298.59 1 329590000 48114 35859 54772 35507 60610 62356 82213 62633 39709 54411 45553 33873 54882 36910 61427 61410 81485 64454 40983 52684 1 1 1 1 1 1 1 1 1 1 5458 437 4799 5119 6074 6074 TMLLLSRSPEAQPK 14 Phospho (STY) _TMLLLSRS(ph)PEAQPK_ TMLLLS(0.403)RS(0.597)PEAQPK T(-32.07)MLLLS(-1.71)RS(1.71)PEAQPK 0 0 1 1 P55265 P55265 P55265 ADAR Double-stranded RNA-specific adenosine deaminase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.724426269531 3 550.947674 1649.82119 37195.008618154 2.0793 0.0011456 277290 152.78 277300 152.78 704.057149219644 74.797 0.66967 74.797 74.479 75.149 1.4211E-14 77 22 5 0.594748275345182 0.00713123420862815 0.128340738051396 0.0047885 1 17565 88.282 62.458 3 33702000 22737 19450 23883 20792 23460 20244 25389 20376 21306 8798.8 21520 18382 23981 21258 23856 20334 25640 20698 21196 8756.7 1 1 1 1 1 1 1 1 1 1 5459 722 4800 5120 6075 6075 1204 TNAVSPK 7 Phospho (STY) _TNAVS(ph)PK_ TNAVS(1)PK T(-41.04)NAVS(41.04)PK 0 0 1 0 Q6XZF7 Q6XZF7 Q6XZF7 DNMBP Dynamin-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.847839355469 2 398.683668 795.352784 39454.8626160376 1.4801 0.00059009 574800 229.16 574800 229.16 627.847149774125 36.754 0.49838 36.754 36.457 36.955 -7.1054E-15 36 16 3 0.995992587060457 0.0018470661470381 0.0310444171255738 0.0089327 1 8283 90.104 53.77 2 26038000 30203 27911 30368 26452 22920 31062 21206 26475 28747 5103.8 28581 26358 30475 27323 23682 30881 21875 26888 28045 5418.5 1 1 1 1 1 1 1 1 1 1 5460 1287 4801 5121 6076 6076 2293 TNEKVELQELNDR 13 Unmodified _TNEKVELQELNDR_ 0 0 0 1 P08670;P17661 P08670 P08670 VIM;DES Vimentin;Desmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.046630859375 3 529.937281 1586.79001 37820.4313007429 1.5281 0.00080978 288290 152.77 288290 152.78 683.046242741123 56.249 0.62263 56.249 55.861 56.484 0 78 20 5 0.906468117904684 0.00462706735701987 0.0408675630811261 0.00024999 1 13118 117 68.855 1 38076000 28825 31935 30009 31638 35507 30135 35140 33081 33827 7222.4 27280 30166 30216 32479 35702 30324 35752 33286 33433 7566.4 1 1 1 1 1 1 1 1 1 1 5461 336 4802 5122 6077 6077 TNILQYASTRPPTLSPIPHIPR 22 Phospho (STY) _TNILQYASTRPPTLS(ph)PIPHIPR_ TNILQYASTRPPT(0.018)LS(0.982)PIPHIPR T(-109)NILQY(-103.68)AS(-42.35)T(-38.43)RPPT(-17.45)LS(17.45)PIPHIPR 0 0 1 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.382080078125 4 638.840078 2551.33121 36714.6556943434 1.3448 0.0008591 89679 57.29 89680 57.291 696.381003626334 89.352 1.0732 89.352 88.708 89.781 -1.4211E-14 140 36 5 0.740766748819666 0.00853122278602793 0.149545321322873 5.4902E-08 1 20773 155.15 131.92 6 80986000 5250.8 6991.3 5806.1 5242.2 4686.3 5253 4263.3 6258.5 6660.2 7546.5 4970.7 6594.4 5800 5489.4 4818 5291.7 4425.6 6466.1 6470 7250.8 1 1 1 1 1 1 1 1 1 1 5462 310 4803 5123 6078 6078 511 TNKSPEAK 8 Phospho (STY) _TNKS(ph)PEAK_ T(0.26)NKS(0.74)PEAK T(-4.55)NKS(4.55)PEAK 0 0 1 1 P46087 P46087 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 547.97802734375 3 318.814585 953.421926 42603.7694255243 1.8172 0.00057934 718800 229.16 718800 229.16 547.977505552574 32.456 0.40941 32.456 32.208 32.617 0 36 13 4 0.596589083940057 0.00152754260659773 0.0144388122335814 0.027194 1 7260 52.555 29.638 2 13965000 18497 12393 17489 13603 10858 18237 9412 13989 15055 2920.3 17499 11714 17584 13968 11395 18026 9804.6 14284 14615 3073.5 1 1 1 1 1 1 1 1 1 1 5463 606 4804 5124 6079 6079 1001 TNLQPLESTQSQDF 14 Phospho (STY) _TNLQPLESTQS(ph)QDF_ TNLQPLESTQS(1)QDF T(-168.58)NLQPLES(-69.74)T(-44.67)QS(44.67)QDF 0 0 1 0 Q9Y248 Q9Y248 Q9Y248 GINS2 DNA replication complex GINS protein PSF2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 958.947326660156 2 844.364182 1686.71381 31818.4548397522 1.4893 0.0012575 135700 114.58 135700 114.58 959.447430794575 80.218 0.79322 80.218 79.93 80.723 0 76 26 4 0.991080489607789 0.0016973055186935 0.0260956452121393 1.629E-10 1 18752 195.58 181.91 4 43318000 5656.2 6243.4 6222.9 5837.6 10089 5252.6 9704.3 6575.9 7151 21661 5354.3 5895.6 6280.1 6009.2 10002 5348.4 9826.7 7197.5 7164.1 20548 1 1 1 1 1 1 1 1 1 1 5464 2237 4805 5125 6080 6080 4134 TNLSGRQSPSFK 12 Phospho (STY) _TNLSGRQS(ph)PSFK_ TNLS(0.004)GRQS(0.97)PS(0.025)FK T(-38.01)NLS(-23.34)GRQS(15.91)PS(-15.91)FK 0 0 1 1 Q6IN85 Q6IN85 Q6IN85 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.999206542969 3 467.888924 1400.64494 40208.3656919489 1.8657 0.00087293 326520 152.78 326520 152.78 620.998244695516 49.269 0.57284 49.269 48.969 49.542 0 61 19 4 0.903519503311583 0.00333156711611215 0.0555346056915889 0.01152 1 11412 66.289 45.336 4 29552000 20291 12503 21771 12409 21174 20244 20700 17993 11871 5233.2 19206 11810 21829 12872 21508 19924 20852 18293 12088 5344.1 1 1 1 1 1 1 1 1 1 1 5465 1241 4806 5126 6081 6081 2185 TNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPK 33 Phospho (STY) _TNLTSQSSTTNLPGSPGSPGS(ph)PGSPGSPGSVPK_ TNLTSQSSTTNLPGSPGS(0.003)PGS(0.524)PGS(0.461)PGS(0.012)PGS(0.001)VPK T(-101.02)NLT(-94.74)S(-90.56)QS(-86.23)S(-81.75)T(-77.13)T(-77.13)NLPGS(-36.81)PGS(-22.66)PGS(0.56)PGS(-0.56)PGS(-16.47)PGS(-30.1)VPK 0 0 1 0 Q6IN85 Q6IN85 Q6IN85 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 894.9501953125 4 780.114759 3116.42993 33455.3539985421 1.6728 0.001305 146880 114.58 146880 114.58 894.948794622457 64.961 0.74971 64.961 64.564 65.314 0 102 25 5 0.913487492786205 0.00313824385310341 0.0237224788965467 7.376E-08 2 15234 141.68 119.44 13 31623000 11917 12000 12338 11362 11884 13567 14854 12747 11028 20263 11278 11332 12399 11741 12125 13528 14873 13429 11044 19375 2 2 2 2 2 2 2 2 2 2 5466 1241 4807 5127 6082;6083 6082 2186 TNPPGGKGSGIFDESTPVQTR 21 Phospho (STY) _TNPPGGKGS(ph)GIFDESTPVQTR_ TNPPGGKGS(0.999)GIFDES(0.001)TPVQTR T(-71.65)NPPGGKGS(32.18)GIFDES(-32.18)T(-45.45)PVQT(-72.96)R 0 0 1 1 Q9H910 Q9H910 Q9H910 HN1L Hematological and neurological expressed 1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.457885742188 3 742.34599 2224.01614 33024.3448333743 2.2968 0.001705 205800 152.78 205800 152.78 895.45516975204 63.224 0.78849 63.224 62.874 63.662 0 88 26 5 0.938124820241023 0.00397769766012975 0.0478413894957216 1.7428E-11 1 14816 190.79 154.53 5 37175000 6584.8 23210 7713.3 23357 13469 8703.6 11180 14133 25766 9059.6 6235.1 21927 7768.1 23738 13310 9463.2 11890 14239 24805 8857.8 1 1 1 1 1 1 1 1 1 1 5467 1965 4808 5128 6084 6084 3577;4772 TNPPTQKPPSPPMSGR 16 Phospho (STY) _TNPPTQKPPS(ph)PPMSGR_ TNPPT(0.003)QKPPS(0.996)PPMS(0.002)GR T(-43.41)NPPT(-25.95)QKPPS(25.95)PPMS(-27.92)GR 0 0 1 1 Q8IZP0 Q8IZP0 Q8IZP0 ABI1 Abl interactor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 744.389221191406 3 591.278083 1770.81242 36477.6813853565 1.9261 0.0011389 258380 152.78 258380 152.78 744.387948510643 43.971 1.2699 43.971 43.354 44.624 0 162 43 6 0.962099486559193 0.00727537243289028 0.0711258386385013 3.6431E-05 2 10043 128.38 95.185 4 89675000 82985 75002 84425 70882 99142 85114 100610 95940 74603 41436 78531 70829 85111 73260 99737 84892 101630 97064 74714 41238 2 2 2 2 2 2 2 2 2 2 5468 1446 4809 5129 6085;6086 6086 2682;2683 TNPPTQKPPSPPMSGR 16 Oxidation (M),Phospho (STY) _TNPPTQKPPSPPM(ox)S(ph)GR_ TNPPTQKPPSPPM(1)SGR TNPPT(0.013)QKPPS(0.434)PPMS(0.552)GR TNPPTQKPPSPPM(53.58)SGR T(-35.57)NPPT(-16.19)QKPPS(-1.04)PPMS(1.04)GR 0 1 1 1 Q8IZP0 Q8IZP0 Q8IZP0 ABI1 Abl interactor 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 749.718566894531 3 596.609721 1786.80733 NaN NaN NaN NaN NaN NaN NaN NaN 37.518 1 37.518 37.018 38.018 0 NaN NaN NaN 0.048815 1 8482 53.585 39.33 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5469 1446 4809 5130 6087 6087 174 2682;2683 TNRGSQLHK 9 Phospho (STY) _TNRGS(ph)QLHK_ T(0.031)NRGS(0.969)QLHK T(-14.95)NRGS(14.95)QLHK 0 0 1 1 P42356 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 526.955322265625 3 374.18015 1119.51862 42952.8650885786 1.6286 0.00060939 408290 152.78 408290 152.78 526.95521856412 27.848 0.31448 27.848 27.667 27.981 0 23 10 3 0.972734045103328 0.0036916674250102 0.0480234007645879 0.0073869 1 6193 77.644 36.104 2 23008000 14061 10596 13460 10000 11408 14973 11049 12939 11239 2284.3 13303 10007 13562 10384 11693 14765 11269 13126 11081 2450.4 1 1 1 1 1 1 1 1 1 1 5470 586 4810 5131 6088 6088 946 TNRSSVK 7 Phospho (STY) _TNRSS(ph)VK_ TNRS(0.028)S(0.972)VK T(-37.53)NRS(-15.43)S(15.43)VK 0 0 1 1 Q14676 Q14676 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 443.915283203125 3 291.139292 870.396046 46984.9373219233 0.74698 0.00021748 524750 152.78 524750 152.78 443.914862939974 25.61 0.37407 25.61 25.385 25.759 3.5527E-15 33 12 3 0.835756939624174 0.00565130065198965 0.0545365927561179 0.0042543 1 5715 93.096 35.497 3 15627000 16902 17407 19046 18590 20174 19660 23760 18831 19001 2450.7 16002 16450 19075 19032 20452 19653 23883 18995 18950 2743.5 1 1 1 1 1 1 1 1 1 1 5471 1016 4811 5132 6089 6089 1732;1733 TNSMGSATGPLPGTK 15 Oxidation (M),Phospho (STY) _TNS(ph)M(ox)GSATGPLPGTK_ TNSM(1)GSATGPLPGTK T(0.224)NS(0.77)MGS(0.006)ATGPLPGTK TNSM(148.69)GSATGPLPGTK T(-5.36)NS(5.36)MGS(-21.32)AT(-67.05)GPLPGT(-140.47)K 0 1 1 0 O15014 O15014 O15014 ZNF609 Zinc finger protein 609 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.666259765625 3 505.556734 1513.64837 38366.0963289288 1.0587 0.00053523 302190 152.78 302190 152.78 658.666102998137 52.042 0.43559 52.042 51.776 52.211 0 23 14 2 0.620525067342666 0.0012566247375294 0.0101188497422586 6.1659E-07 1 12111 148.69 120.37 5 20451000 10324 14868 11805 12975 17114 11566 19507 13951 15139 7301.9 9774.5 14034 11871 13415 17083 11700 19622 14122 15123 7198.5 1 1 1 1 1 1 1 1 1 1 5472 74 4812 5133 6090 6090 10 126 TNSMGSATGPLPGTK 15 Phospho (STY) _TNS(ph)MGSATGPLPGTK_ T(0.217)NS(0.78)MGS(0.003)ATGPLPGTK T(-5.55)NS(5.55)MGS(-24.77)AT(-76.52)GPLPGT(-173.99)K 0 0 1 0 O15014 O15014 O15014 ZNF609 Zinc finger protein 609 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.00146484375 3 500.225096 1497.65346 38021.7730890308 1.879 0.00093994 305410 152.78 305420 152.78 653.000747157095 60.016 0.57737 60.016 59.736 60.314 0 62 19 4 0.984785218331118 0.0024769285615023 0.0250290755898437 1.4655E-10 1 14041 185.23 149.58 5 60769000 10924 13185 11149 12429 18314 9830.8 19495 14743 11749 5260.4 10338 12451 11303 12766 18172 10041 19575 14756 11922 5294.5 1 1 1 1 1 1 1 1 1 1 5473 74 4812 5134 6091 6091 126 TNSMQQLEQWIK 12 Phospho (STY) _TNS(ph)MQQLEQWIK_ T(0.215)NS(0.785)MQQLEQWIK T(-5.63)NS(5.63)MQQLEQWIK 0 0 1 0 Q9HAU0 Q9HAU0 Q9HAU0 PLEKHA5 Pleckstrin homology domain-containing family A member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.350280761719 3 529.240858 1584.70074 38375.5270257126 1.4403 0.00076225 288670 152.78 288670 152.78 682.350948226849 99.325 0.20119 99.325 99.236 99.438 0 15 6 3 0.967680496132921 0.00236047975833067 0.0847869519389888 2.6169E-07 1 23083 151.73 122.4 2 10159000 6928.7 7012.6 6285.8 6617.3 5301.2 8483.6 4611 6830.7 7260 14336 6553.9 6622.3 6353 6848.6 5430.6 8426.5 4799.3 7347.7 7051.1 13657 1 1 1 1 1 1 1 1 1 1 5474 1972 4813 5135 6092 6092 3589 TNSMSSSGLGSPNR 14 Phospho (STY) _TNSMSSSGLGS(ph)PNR_ TNSMSSSGLGS(1)PNR T(-120.55)NS(-89.16)MS(-86.01)S(-74.69)S(-58.9)GLGS(58.9)PNR 0 0 1 0 Q9NZN8 Q9NZN8 Q9NZN8 CNOT2 CCR4-NOT transcription complex subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.3857421875 2 737.803237 1473.59192 33892.0499716582 1.3358 0.00098559 155300 114.58 155300 114.58 852.3847887393 39.574 0.66956 39.574 39.309 39.979 0 60 22 4 0.978254259586851 0.00367105915722528 0.074636964992819 5.2866E-16 1 8983 239.39 197.32 6 49391000 25396 39237 28141 35831 36884 26378 43911 38476 39303 5247.5 24041 37046 28299 36846 37008 27024 44234 38284 38976 5831.7 1 1 1 1 1 1 1 1 1 1 5475 2086 4814 5136 6093 6093 3777 TNSPGFQK 8 Phospho (STY) _T(ph)NSPGFQK_ T(0.609)NS(0.391)PGFQK T(1.92)NS(-1.92)PGFQK 0 0 1 0 Q5T8P6 Q5T8P6 Q5T8P6 RBM26 RNA-binding protein 26 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 708.868713378906 2 479.705132 957.395711 37135.0893879084 1.772 0.00085004 477720 229.16 477720 229.16 708.867978682443 46.572 0.74832 46.572 46.346 47.095 0 64 25 4 0.989839186950665 0.00346641585601466 0.0389252522790827 0.0017763 1 10752 105.13 65.197 2 57919000 69248 47755 68191 41947 68788 66355 67107 59377 50463 10715 65522 45080 68730 43817 69731 65354 67934 60152 50498 11464 1 1 1 1 1 1 1 1 1 1 5476 1189 4815 5137 6094 6094 4606 TNSPSSAK 8 Phospho (STY) _TNS(ph)PSSAK_ T(0.002)NS(0.938)PS(0.057)S(0.004)AK T(-27.7)NS(12.18)PS(-12.18)S(-23.96)AK 0 0 1 0 Q14669 Q14669 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.343200683594 2 436.18149 870.348427 39723.7423997494 2.3956 0.0010449 525380 229.16 525380 229.16 665.343262570946 29.031 0.3239 29.031 28.896 29.22 0 18 10 2 0.914392916653715 0.000957756578915776 0.0254340027317642 0.0043892 1 6469 96.24 15.534 4 9655700 22822 14239 24706 12271 14965 24981 15421 17206 14082 3781.1 21602 13440 24651 12924 15767 24382 15639 17674 13951 3958.5 1 1 1 1 1 1 1 1 1 1 5477 1014 4816 5138 6095 6095 1724 TNSSSNDLEVEDR 13 Phospho (STY) _TNSS(ph)SNDLEVEDR_ T(0.001)NS(0.08)S(0.84)S(0.08)NDLEVEDR T(-30.56)NS(-10.24)S(10.24)S(-10.24)NDLEVEDR 0 0 1 0 Q8IX90 Q8IX90 Q8IX90 SKA3 Spindle and kinetochore-associated protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.887817382813 2 773.306864 1544.59917 32578.4936868502 1.3066 0.0010104 148170 114.58 148170 114.58 887.890430832045 40.756 0.54434 40.756 40.449 40.993 0 28 18 2 0.933241307386963 0.000729576706815627 0.0108727294863261 1.4139E-22 1 9276 258.65 212.89 4 17670000 14349 25311 14733 22855 11019 13919 11267 17317 27794 4364.6 13579 23896 14768 23473 11421 14401 11909 17370 26723 4510.6 1 1 1 1 1 1 1 1 1 1 5478 1424 4817 5139 6096 6096 2595 TNSTGGSSGSSVGGGSGK 18 Phospho (STY) _TNS(ph)TGGSSGSSVGGGSGK_ T(0.199)NS(0.602)T(0.199)GGSSGSSVGGGSGK T(-4.81)NS(4.81)T(-4.81)GGS(-31.27)S(-55.55)GS(-85.53)S(-107.31)VGGGS(-145)GK 0 0 1 0 Q8IUD2 Q8IUD2 Q8IUD2 ERC1 ELKS/Rab6-interacting/CAST family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 674.992004394531 3 521.880934 1562.62097 38095.3475488535 2.1161 0.0011044 292740 152.78 292740 152.78 674.656768713202 30.591 0.38125 30.591 30.375 30.757 0 42 12 5 0.934586707320949 0.00608095691870129 0.127271360123208 1.5086E-07 1 6829 153.93 139.23 8 32963000 25063 29584 28022 26197 30254 32467 36780 33506 31752 10271 23727 27928 28086 27206 30658 32296 36987 33878 31543 10447 1 1 1 1 1 1 1 1 1 1 5479 1408 4818 5140 6097 6097 2564 TNTPVKEDWNVR 12 Phospho (STY) _TNT(ph)PVKEDWNVR_ T(0.125)NT(0.875)PVKEDWNVR T(-8.46)NT(8.46)PVKEDWNVR 0 0 1 1 P78347 P78347 P78347 GTF2I General transcription factor II-I MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.683166503906 3 513.571484 1537.69262 38002.8860297447 1.9362 0.00099435 297480 152.78 297480 152.78 666.681153311653 56.372 0.5082 56.372 56.126 56.634 7.1054E-15 54 16 4 0.905383388440283 0.00518615113587473 0.0737699645927908 0.016478 1 13152 82.244 62.666 2 44803000 28263 31228 29312 32752 32634 28440 33132 33096 36077 9845.2 26748 29509 29497 33467 32931 28776 33782 33314 35472 10036 1 1 1 1 1 1 1 1 1 1 5480 798 4819 5141 6098 6098 4502 TPAAAAAMNLASPR 14 Oxidation (M),Phospho (STY) _TPAAAAAM(ox)NLAS(ph)PR_ TPAAAAAM(1)NLASPR TPAAAAAMNLAS(1)PR TPAAAAAM(87.35)NLASPR T(-81.81)PAAAAAMNLAS(81.81)PR 0 1 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 556.278259277344 3 479.890048 1436.64831 41277.4712393157 1.6377 0.00078593 159180 76.387 159180 76.387 556.276749768981 49.678 1.0464 49.678 49.024 50.07 0 89 35 4 0.855237923645878 0.00173192468389115 0.0396028405635809 0.0054029 1 11543 87.352 69.488 2 11370000 10122 6691.1 8822 9960.3 6617.3 9939.1 7468.5 8549.8 8751.5 2925.3 9572.7 6339.5 8932.6 10027 6858.7 9951.5 7596.6 8718 8580.7 2952.4 1 1 1 1 1 1 1 1 1 1 5481 2226 4820 5142 6099 6099 244 4116 TPAAAAAMNLASPR 14 Phospho (STY) _TPAAAAAMNLAS(ph)PR_ TPAAAAAMNLAS(1)PR T(-138.42)PAAAAAMNLAS(138.42)PR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 550.946533203125 3 474.55841 1420.6534 42177.2725008142 1.3234 0.00062805 160970 76.387 160970 76.388 550.946069814745 64.135 0.95942 64.135 63.633 64.593 0 111 32 5 0.991319972246645 0.00294706884218749 0.0396404189037586 4.8622E-07 1 15010 155.49 141.58 2 77485000 5363.5 4414 5223.8 4708.4 4638.7 5055.5 5065 6188.5 4860.8 2185.2 5074.7 4171.5 5261.7 4822 4747.7 5070.2 5129.7 6229.4 4804.8 2200.9 1 1 1 1 1 1 1 1 1 1 5482 2226 4820 5143 6100 6100 4116 TPAALAALSLTGSGTPPTAANYPSSSR 27 Phospho (STY) _TPAALAALSLTGSGT(ph)PPTAANYPSSSR_ TPAALAALSLTGSGT(1)PPTAANYPSSSR T(-160.22)PAALAALS(-114.27)LT(-76.95)GS(-39.29)GT(39.29)PPT(-66.48)AANY(-159.28)PS(-134.92)S(-140.89)S(-146.79)R 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 957.149719238281 3 880.428602 2638.26398 32325.7842271459 1.8028 0.0015872 86762 76.387 86763 76.389 957.149425649348 92.87 0.7825 92.87 92.396 93.179 0 75 26 4 0.888715644221171 0.00188186618017631 0.0233872433743115 4.1532E-19 1 21595 249.97 230.66 10 20847000 2447.5 3345.7 3460.7 3476 3739.5 3256.7 3099.8 3817.1 3410.8 25180 2319.7 3161.3 3428.7 3557.6 3769.7 3328.6 3194.5 4565.9 3352.2 23799 1 1 1 1 1 1 1 1 1 1 5483 2226 4821 5144 6101 6101 4836 TPADRGPSPAPAPAASPQPGSR 22 Phospho (STY) _TPADRGPS(ph)PAPAPAASPQPGSR_ TPADRGPS(1)PAPAPAASPQPGSR T(-41.52)PADRGPS(41.52)PAPAPAAS(-77.62)PQPGS(-123.5)R 0 0 1 1 Q8IX07 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.730041503906 3 722.342691 2164.00624 35399.5216511686 0.99559 0.00071916 105750 76.387 105750 76.388 799.064752952949 34.296 0.29435 34.296 34.134 34.428 0 15 9 2 0.880930332294547 0.000767003995683747 0.00592283153058916 1.8786E-08 1 7692 167.06 146.24 4 18776000 4684.5 7498.5 5082.8 7695.2 10332 5447.3 9048.6 8311.7 7926 2046.6 4434.3 7084.7 5157 7853.1 10156 5600.2 9241.6 8287.9 7868.2 2119.5 1 1 1 1 1 1 1 1 1 1 5484 1421 4822 5145 6102 6102 2590;2591 TPADRGPSPAPAPAASPQPGSR 22 2 Phospho (STY) _TPADRGPS(ph)PAPAPAAS(ph)PQPGSR_ T(0.006)PADRGPS(0.994)PAPAPAAS(0.84)PQPGS(0.16)R T(-22.52)PADRGPS(22.52)PAPAPAAS(7.2)PQPGS(-7.2)R 0 0 2 1 Q8IX07 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.720581054688 3 748.998135 2243.97258 35220.7875874244 1.2726 0.00095321 101990 76.388 101990 76.389 825.719924735255 34.612 0.51668 34.612 34.398 34.915 0 45 17 3 0.955437181052447 0.00244167789372728 0.0104930690295213 2.9681E-05 1 7774 124.61 105.91 6 29640000 2917.7 11027 4372.2 11104 6939.7 3331.4 5990.3 6375.1 12755 2809.9 2766.3 10417 4348.6 11272 6883.8 3729.6 6328.4 6361.4 12298 2793.4 1 1 1 1 1 1 1 1 1 1 5485 1421 4822 5146 6103 6103 2590;2591 TPADTGFAFPDWAYKPESSPGSR 23 Phospho (STY) _TPADTGFAFPDWAYKPES(ph)SPGSR_ TPADTGFAFPDWAYKPES(0.588)S(0.411)PGS(0.001)R T(-151.09)PADT(-136.45)GFAFPDWAY(-120.06)KPES(1.56)S(-1.56)PGS(-30.48)R 0 0 1 1 P50548 P50548 P50548 ERF ETS domain-containing transcription factor ERF MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1008.48077392578 3 855.375838 2563.10568 31234.0018342186 1.7169 0.0014686 178610 152.78 178610 152.78 1008.48599339921 95.833 0.46263 95.833 95.594 96.056 -1.4211E-14 37 15 4 0.949980191244446 0.00299335496965995 0.0985760644638967 3.1141E-12 1 22299 180.06 152.45 6 10601000 7955.5 6424 7654.1 6678.6 3017.2 8240 3124.5 6834.5 8062.3 29735 7526.8 6070 7668 6866.9 3341.8 8228 3310.6 7806 7745.6 28157 1 1 1 1 1 1 1 1 1 1 5486 664 4823 5147 6104 6104 1122 TPELPEPSVK 10 Phospho (STY) _T(ph)PELPEPSVK_ T(1)PELPEPSVK T(71.5)PELPEPS(-71.5)VK 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 545.965698242188 3 392.85645 1175.54752 42262.1680952506 1.5617 0.00061353 388880 152.78 388890 152.78 545.63177766163 67.291 0.81635 67.291 66.978 67.794 0 67 27 4 0.945280827985312 0.00182909478397744 0.0440317272900313 0.0055346 1 15777 90.697 74.473 2 17544000 6536.7 6379 5452.1 5956.7 6294.1 7053.4 7135.5 6147.8 6791.5 2412.3 6181.3 6023.6 5564.2 6159.6 6349.2 7014.2 7213.5 6274.5 6715.8 2413.8 1 1 1 1 1 1 1 1 1 1 5487 1436 4824 5148 6105 6105 4659 TPGVLLPGAGGAAGFGMTSPPPPTSPSR 28 Oxidation (M),Phospho (STY) _TPGVLLPGAGGAAGFGM(ox)TSPPPPTS(ph)PSR_ TPGVLLPGAGGAAGFGM(1)TSPPPPTSPSR TPGVLLPGAGGAAGFGMTSPPPPT(0.043)S(0.775)PS(0.182)R TPGVLLPGAGGAAGFGM(162.19)TSPPPPTSPSR T(-155.62)PGVLLPGAGGAAGFGMT(-69.95)S(-53.2)PPPPT(-12.52)S(6.29)PS(-6.29)R 0 1 1 0 Q96L91;Q6ZTU2 Q96L91 Q96L91 EP400;EP400NL E1A-binding protein p400;EP400 N-terminal-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 968.487854003906 3 891.762927 2672.26695 32180.7529124934 1.5183 0.001354 85659 76.388 85661 76.389 968.484327404126 84.714 0.74134 84.714 84.385 85.127 0 92 25 5 0.932526684862023 0.00603074016330936 0.120586933929986 8.771E-08 1 19762 162.19 143.79 6 32399000 3322.4 3963.8 3769 3421.6 3670.1 3744.6 3436.1 3201.2 3545.3 21839 3145.5 3741.4 3767.8 3551.5 3727.1 3773.3 3511.9 3890.1 3493.5 20638 1 1 1 1 1 1 1 1 1 1 5488 1710 4825 5149 6106 6106 201 3154 TPGVLLPGAGGAAGFGMTSPPPPTSPSR 28 Phospho (STY) _TPGVLLPGAGGAAGFGMTSPPPPTS(ph)PSR_ TPGVLLPGAGGAAGFGMTSPPPPT(0.207)S(0.651)PS(0.141)R T(-127.8)PGVLLPGAGGAAGFGMT(-47.08)S(-32.44)PPPPT(-4.97)S(4.97)PS(-6.63)R 0 0 1 0 Q96L91;Q6ZTU2 Q96L91 Q96L91 EP400;EP400NL E1A-binding protein p400;EP400 N-terminal-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 963.155944824219 3 886.431289 2656.27204 31784.7914084678 1.8496 0.0016395 86174 76.387 86176 76.389 963.152863914135 93.032 0.93487 93.032 92.512 93.447 0 143 31 6 0.993398613834242 0.00351447953290932 0.0360024578728287 4.1668E-06 1 21607 137.47 126.67 6 55054000 2574.1 3523.7 2538.8 2828.6 3442.7 3430.4 3439.7 3281.6 3164.5 25988 2435.6 3324.8 2569.5 2956.5 3440 3458.6 3493.9 4080.5 3134.1 24547 1 1 1 1 1 1 1 1 1 1 5489 1710 4825 5150 6107 6107 3154 TPHDILEDINASPEMR 16 Phospho (STY) _TPHDILEDINAS(ph)PEMR_ TPHDILEDINAS(1)PEMR T(-64)PHDILEDINAS(64)PEMR 0 0 1 0 Q9Y6Q9 Q9Y6Q9 Q9Y6Q9 NCOA3 Nuclear receptor coactivator 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 716.67236328125 3 639.951924 1916.83394 36703.4688708789 1.8121 0.0011596 119360 76.387 119370 76.388 716.673236695897 78.479 0.48779 78.479 78.205 78.693 0 32 16 3 0.942320872180719 0.000860065135037523 0.0190033522827 0.00022465 1 18413 101.1 80.09 2 7778700 4841.3 6710.8 6881.2 7323.2 5544.2 7021.5 5030.4 6820 8429.7 7959.9 4588.8 6343 6794.4 7477 5701.2 7063.9 5238.3 7088.6 8173.4 7653 1 1 1 1 1 1 1 1 1 1 5490 2318 4826 5151 6108 6108 4273 TPISPLK 7 Phospho (STY) _TPIS(ph)PLK_ T(0.001)PIS(0.999)PLK T(-30.38)PIS(30.38)PLK 0 0 1 0 Q9NQW6 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.384033203125 2 418.219887 834.425221 38564.107909581 2.3383 0.00097793 547950 229.16 547950 229.16 647.382811149765 66.654 0.57598 66.654 66.345 66.921 0 79 19 5 0.875854834764223 0.00364583278081858 0.196704701378901 0.0023351 1 15611 102.07 7.2174 2 208820000 22880 30538 24988 33465 12943 22790 13360 24039 33231 8941.3 21658 28865 24894 34011 13871 23353 14123 24334 31946 8975.7 1 1 1 1 1 1 1 1 1 1 5491 2010 4827 5152 6109 6109 3650 TPLALAGSPTPK 12 Phospho (STY) _TPLALAGS(ph)PTPK_ TPLALAGS(0.996)PT(0.004)PK T(-98.16)PLALAGS(23.77)PT(-23.77)PK 0 0 1 0 O95785 O95785 O95785 WIZ Protein Wiz MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 564.325805664063 3 411.547728 1231.62135 42520.619303764 1.9737 0.00081227 371220 152.78 371220 152.78 564.657730763144 72.157 0.44363 72.157 71.954 72.398 -1.4211E-14 42 14 4 0.953815210065903 0.0025224515001466 0.0403570920595266 4.0967E-05 1 16926 128.71 102.59 3 15958000 4839.4 7341.3 7824.5 6624.8 6669.9 5329.3 6929.7 7219.7 6647.3 3022.3 4590.5 6931 7693.5 6825.1 6840.2 5429.1 7033.6 7259.7 6570.9 3012.9 1 1 1 1 1 1 1 1 1 1 5492 261 4828 5153 6110 6110 436 TPLDLFAHFGPEPGDHSDPLPPSAPSPTR 29 Phospho (STY) _TPLDLFAHFGPEPGDHSDPLPPSAPS(ph)PTR_ TPLDLFAHFGPEPGDHSDPLPPS(0.011)APS(0.961)PT(0.028)R T(-211)PLDLFAHFGPEPGDHS(-80.79)DPLPPS(-19.31)APS(15.36)PT(-15.36)R 0 0 1 0 Q8N1G0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 841.408874511719 4 783.867021 3131.43898 33533.4261059566 1.5422 0.0012089 73088 57.291 73089 57.292 841.408876870743 99.491 0.48541 99.491 99.322 99.807 0 70 16 6 0.9733859477047 0.0147594267304286 0.16471651389051 5.4731E-18 1 23128 231.97 215.01 5 180070000 8024.9 14153 11230 14703 14693 7172.5 13489 14202 14043 44571 7605.6 13373 11164 14942 14690 7697.6 13803 15316 13832 42298 1 1 1 1 1 1 1 1 1 1 5493 1455 4829 5154 6111 6111 2697 TPNTEQQTPLFQVISPQR 18 Phospho (STY) _TPNTEQQTPLFQVIS(ph)PQR_ TPNTEQQTPLFQVIS(1)PQR T(-101.21)PNT(-95.71)EQQT(-68.02)PLFQVIS(68.02)PQR 0 0 1 0 Q8IZD4 Q8IZD4 Q8IZD4 DCP1B mRNA-decapping enzyme 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 798.743774414063 3 722.019326 2163.03615 35211.8824817005 2.0767 0.0014994 105800 76.387 105800 76.389 798.740221764676 81.95 0.98088 81.95 81.477 82.458 0 79 33 4 0.925323104287355 0.00332541879622756 0.0682750838679151 1.6801E-07 1 19172 151.42 118.34 4 11759000 5600.5 4589.9 5493.1 4914.2 5104.4 6526.9 5125.3 5662.2 5655.1 15607 5299.1 4337.8 5532.7 5051.9 5203.7 6488.9 5230.7 6183.4 5557.4 14827 1 1 1 1 1 1 1 1 1 1 5494 1443 4830 5155 6112 6112 2678 TPPAAAALGAPPPLVTAAGPPTPPGPPR 28 Phospho (STY) _TPPAAAALGAPPPLVTAAGPPT(ph)PPGPPR_ TPPAAAALGAPPPLVT(0.011)AAGPPT(0.989)PPGPPR T(-65.74)PPAAAALGAPPPLVT(-19.44)AAGPPT(19.44)PPGPPR 0 0 1 0 Q9HCM7 Q9HCM7 Q9HCM7 FBRSL1 Fibrosin-1-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.391235351563 4 655.59782 2618.36217 37888.2343574141 1.7939 0.0011761 87387 57.291 87389 57.292 713.139326365004 88.636 0.68524 88.636 88.282 88.967 0 67 23 4 0.887178323149681 0.00230149276661577 0.0576240115812563 0.021452 1 20673 67.829 49.465 3 12185000 2503.1 3183.5 2864.7 2757.7 2810.5 2386.7 3345.5 3727.5 2870.2 6676.8 2369.9 3004.9 2864.2 2851.6 2862.4 2438.2 3366.7 3888.2 2852.2 6373.3 1 1 1 1 1 1 1 1 1 1 5495 1990 4831 5156 6113 6113 4774 TPPGALLGAPPPLVPAPRPSSPPR 24 Phospho (STY) _TPPGALLGAPPPLVPAPRPS(ph)SPPR_ TPPGALLGAPPPLVPAPRPS(0.5)S(0.5)PPR T(-116.46)PPGALLGAPPPLVPAPRPS(0)S(0)PPR 0 0 1 1 Q9HAH7 Q9HAH7 Q9HAH7 FBRS Probable fibrosin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 884.827026367188 3 808.105065 2421.29337 34454.6781001862 1.5038 0.0012152 94527 76.388 94528 76.389 884.826814204658 85.783 0.76868 85.783 85.419 86.187 0 78 26 4 0.917586178866198 0.00259156069929955 0.0258045656430023 2.3085E-05 1 20022 128.43 103.22 3 11002000 5529.2 4676.1 5176.1 4627.4 4223.6 4505.5 5742.9 5250.2 5373.8 12569 5230.7 4417.1 5223.6 4752.2 4363.5 4554.6 5762.7 5616.2 5318 11957 1 1 1 1 1 1 1 1 1 1 5496 1970 4832 5157 6114 6114 3584;3585 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 Phospho (STY) _T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLR_ T(0.972)PPRDLPT(0.028)IPGVTSPSSDEPPMEASQSHLR T(15.4)PPRDLPT(-15.4)IPGVT(-61.67)S(-69.1)PS(-80.72)S(-94.51)DEPPMEAS(-140.73)QS(-149.12)HLR 0 0 1 1 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 878.431945800781 4 820.639244 3278.52787 33237.0954375206 1.8244 0.0014972 69812 57.291 69814 57.292 878.4318668692 77.461 1.3797 77.461 76.854 78.234 0 163 47 5 0.78680453011175 0.0088053994896293 0.184221901291235 4.733E-08 1 18122 165.13 144.11 8 30909000 5011.6 4564.5 5048.5 4139.6 3564.8 5777.8 9817.8 7461.7 5969 12267 4742.4 4309.5 5075.1 4302.7 3790 5762.4 9588 7789 6052.8 11724 1 1 1 1 1 1 1 1 1 1 5497 964 4833 5158 6115 6115 4543 TPPVVIK 7 Phospho (STY) _T(ph)PPVVIK_ T(1)PPVVIK T(84)PPVVIK 0 0 1 0 Q96A49 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 431.264465332031 3 278.489262 832.445956 47159.9341444404 0.52567 0.00014639 548590 152.78 548590 152.78 431.264399853764 67.028 0.95644 67.028 66.46 67.416 0 82 32 4 0.907502264575542 0.00498628223659541 0.136909602669386 0.011763 1 15702 83.998 38.686 1 35154000 14848 34607 15554 34849 7064.8 14857 7465.8 20004 37252 1897 14053 32693 15518 35446 7704.4 15852 8395.9 19923 35493 2249.2 1 1 1 1 1 1 1 1 1 1 5498 1642 4834 5159 6116 6116 4721 TPQCQHVSPGMLGSINR 17 Phospho (STY) _TPQCQHVS(ph)PGMLGSINR_ T(0.001)PQCQHVS(0.999)PGMLGSINR T(-29.46)PQCQHVS(29.46)PGMLGS(-55.19)INR 0 0 1 0 Q6P0N0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.354248046875 3 654.628898 1960.86487 36913.4074389422 1.3609 0.00089089 116690 76.388 116690 76.389 731.35115524849 61.593 0.41099 61.593 61.36 61.771 0 33 13 3 0.966408992446217 0.00164357445668613 0.0176953665993059 0.0031984 1 14442 92.854 67.264 3 12506000 9497.1 9341.2 11378 9164.9 8062 10317 8749.5 10174 9069.6 11922 8993.8 8823.3 11309 9439.5 8387.2 10311 8882 10570 8935.4 11462 1 1 1 1 1 1 1 1 1 1 5499 1252 4835 5160 6117 6117 2218 TPQEAIMDGTEIAVSPR 17 Phospho (STY) _TPQEAIMDGTEIAVS(ph)PR_ TPQEAIMDGTEIAVS(1)PR T(-175.81)PQEAIMDGT(-84.47)EIAVS(84.47)PR 0 0 1 0 Q06587 Q06587 Q06587 RING1 E3 ubiquitin-protein ligase RING1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.015991210938 3 632.292058 1893.85434 37521.9676325686 1.7703 0.0011194 120810 76.388 120810 76.389 709.014429904697 78.941 0.92335 78.941 78.551 79.474 0 81 31 4 0.968942099727494 0.00151626205844065 0.0203608961801442 4.2487E-12 1 18482 212.05 175.61 3 14681000 4069 3904.9 3098.7 4563.7 4544.9 3146 3761.8 4338.5 4380.8 6241.4 3846.7 3692.5 3192.2 4622.9 4516.3 3243.4 3883.7 4493.7 4296.3 5977.4 1 1 1 1 1 1 1 1 1 1 5500 878 4836 5161 6118 6118 1424 TPQPSSPMDQMGK 13 Phospho (STY) _TPQPSS(ph)PMDQMGK_ TPQPS(0.013)S(0.987)PMDQMGK T(-36.21)PQPS(-18.73)S(18.73)PMDQMGK 0 0 1 0 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.979370117188 3 495.203415 1482.58842 39192.6018987293 1.9643 0.00097272 308510 152.77 308510 152.78 647.978581591057 57.299 0.60278 57.299 57.044 57.646 0 70 20 4 0.850832115878202 0.00360261498534328 0.0594608294551139 9.6974E-05 1 13400 117.53 103.57 3 29852000 16517 16097 17171 16330 16091 16453 15042 16455 19246 5788.2 15632 15208 17237 16755 16382 16497 15477 16680 18812 5831.1 1 1 1 1 1 1 1 1 1 1 5501 57 4837 5162 6119 6119 89 TPQQTSASQQMLNFPDK 17 Phospho (STY) _T(ph)PQQTSASQQMLNFPDK_ T(0.976)PQQT(0.019)S(0.004)AS(0.001)QQMLNFPDK T(17.09)PQQT(-17.09)S(-24.15)AS(-30.28)QQMLNFPDK 0 0 1 0 Q8TAQ2 Q8TAQ2 Q8TAQ2 SMARCC2 SWI/SNF complex subunit SMARCC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 820.409118652344 3 667.630962 1999.87106 34281.510762399 2.121 0.001416 228840 152.78 228840 152.78 820.408704204058 76.699 0.49682 76.699 76.444 76.941 0 37 16 3 0.965386504568231 0.00144225621552091 0.0302586894656625 0.0001291 1 17986 107.75 89.69 4 9778700 9190.5 8332.4 8339.5 8592.1 6664 8831.7 6238.2 7536.5 9105.9 20922 8693.4 7872.8 8425 8810.1 6858.3 8864.9 6449 8240.2 8863.2 19875 1 1 1 1 1 1 1 1 1 1 5502 1534 4838 5163 6120 6120 4697 TPQSPAPCVLLR 12 Phospho (STY) _TPQS(ph)PAPCVLLR_ TPQS(1)PAPCVLLR T(-52.71)PQS(52.71)PAPCVLLR 0 0 1 0 Q9Y613 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.429260253906 2 709.846719 1417.67889 34111.644399144 1.9776 0.0014038 161420 114.58 161420 114.58 824.427556232172 68.985 0.93526 68.985 68.672 69.607 0 78 31 4 0.98866281530014 0.00110553483072731 0.0213529981962877 7.9826E-11 1 16168 191.01 141.99 2 41236000 11043 22137 11728 21493 15704 10982 17086 16689 21412 13490 10452 20908 11821 21939 15725 11574 17444 16925 20944 13089 1 1 1 1 1 1 1 1 1 1 5503 2305 4839 5164 6121 6121 4250 TPRPASPGPSLPAR 14 Phospho (STY) _TPRPAS(ph)PGPSLPAR_ T(0.006)PRPAS(0.982)PGPS(0.012)LPAR T(-22.07)PRPAS(19.27)PGPS(-19.27)LPAR 0 0 1 1 Q8IY33 Q8IY33 Q8IY33 MICALL2 MICAL-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 571.640441894531 3 495.252085 1482.73443 42204.0296744472 1.3066 0.00064711 154240 76.387 154240 76.388 571.639617452449 40.983 0.65159 40.983 40.772 41.424 0 47 22 3 0.589782526607053 0.00101075368591542 0.0356090796399513 0.010244 1 9369 72.793 51.479 3 12008000 11093 10217 11992 10377 14207 11422 14482 13212 9114 3356.2 10500 9652.6 12051 10661 14285 11431 14581 13284 9220.5 3466.1 1 1 1 1 1 1 1 1 1 1 5504 1433 4840 5165 6122 6122 2615 TPRTPQLK 8 Phospho (STY) _TPRT(ph)PQLK_ T(0.271)PRT(0.729)PQLK T(-4.3)PRT(4.3)PQLK 0 0 1 1 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.929565429688 2 510.765524 1019.5165 35889.4833373452 2.1825 0.0011148 448670 229.16 448670 229.16 739.928308186892 42.952 0.49212 42.952 42.598 43.09 0 35 16 3 0.982518921378032 0.000728757408238329 0.0142360995327669 0.041184 1 9815 57.019 28.851 2 19014000 25046 30823 24427 29732 31136 26575 29636 28544 30115 16834 23698 29112 24711 30544 31180 26835 30252 29062 29694 16511 1 1 1 1 1 1 1 1 1 1 5505 1273 4841 5166 6123 6123 4630;4631 TPRTPRTPQLK 11 2 Phospho (STY) _TPRT(ph)PRT(ph)PQLK_ T(0.208)PRT(0.795)PRT(0.997)PQLK T(-5.88)PRT(5.88)PRT(23.8)PQLK 0 0 2 2 Q6PKG0 Q6PKG0 Q6PKG0 LARP1 La-related protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 638.346130371094 3 485.568736 1453.68438 39081.8057221238 2.1167 0.0010278 314630 152.78 314630 152.78 638.344373259323 41.326 0.74585 41.326 40.966 41.711 0 91 25 5 0.893676425425334 0.00362742207613085 0.116918650419172 0.0077223 1 9383 73.296 46.698 3 72597000 22751 21440 22236 21286 24297 21278 26939 26320 22821 4849.2 21527 20253 22450 21865 24568 21401 27182 26352 22692 5175.2 1 1 1 1 1 1 1 1 1 1 5506 1273 4842 5167 6124 6124 4630;4631 TPSEIQFHQVK 11 Phospho (STY) _TPS(ph)EIQFHQVK_ T(0.258)PS(0.742)EIQFHQVK T(-4.59)PS(4.59)EIQFHQVK 0 0 1 0 Q12851 Q12851 Q12851 MAP4K2 Mitogen-activated protein kinase kinase kinase kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.998901367188 3 465.221903 1392.64388 40807.9314727513 1.2867 0.00059861 328390 152.78 328390 152.78 617.997371538201 60.789 0.43599 60.789 60.573 61.009 0 42 14 4 0.933903796484686 0.00258812457389479 0.0352719579739686 0.00056151 1 14262 100.13 77.549 2 20511000 14521 7779.7 16225 8975.6 20098 14711 18192 13490 9157.7 4614.9 13747 7356 16283 9235 20132 14483 18362 13718 9419 4657.7 1 1 1 1 1 1 1 1 1 1 5507 907 4843 5168 6125 6125 1493 TPSFLKK 7 Phospho (STY) _TPS(ph)FLKK_ T(0.201)PS(0.799)FLKK T(-5.99)PS(5.99)FLKK 0 0 1 1 P35611;P35612;Q9UEY8 P35611;P35612;Q9UEY8 P35611 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 529.988037109375 3 300.824533 899.45177 42439.9898298014 1.7215 0.00051788 761780 229.16 761780 229.16 529.987730559686 67.805 1.1666 67.805 67.446 68.612 0 140 39 6 0.993606804754105 0.0201402158817425 0.679923115911674 0.010279 1 15881 79.974 18.414 2 418830000 60935 49334 61877 45387 32860 52621 39506 48429 48498 1776.7 57663 46581 61909 46959 35162 52373 40141 48794 47471 2793.8 1 1 1 1 1 1 1 1 1 1 5508 549;550;2136 4844 5169 6126 6126 890 TPSGEFLER 9 Phospho (STY) _T(ph)PSGEFLER_ T(0.587)PS(0.413)GEFLER T(1.53)PS(-1.53)GEFLER 0 0 1 0 Q9UNN5 Q9UNN5 Q9UNN5 FAF1 FAS-associated factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.824829101563 2 558.242079 1114.4696 37694.9739818014 1.5418 0.00086071 205250 114.58 205250 114.58 672.823447215512 59.799 0.85968 59.799 59.483 60.343 0 72 29 4 0.938715520692517 0.00229882025412296 0.0385204709868387 0.010396 1 13979 86.014 36.596 2 72319000 13176 33053 13800 29232 22474 13055 21167 23426 33070 6559.5 12470 31202 13963 29988 22287 13950 21935 23294 32125 6718.8 1 1 1 1 1 1 1 1 1 1 5509 2207 4845 5170 6127 6127 3994;4815 TPSIDLQR 8 Phospho (STY) _T(ph)PSIDLQR_ T(0.814)PS(0.186)IDLQR T(6.41)PS(-6.41)IDLQR 0 0 1 0 Q7Z401 Q7Z401 Q7Z401 DENND4A C-myc promoter-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.822082519531 2 505.239339 1008.46413 38480.3419902074 0.95094 0.00048045 226790 114.58 226790 114.58 619.821036163225 55.574 0.52678 55.574 55.335 55.861 0 42 17 4 0.962374277167294 0.00169804505332893 0.0413821290007888 0.0018412 1 12953 103.88 43.05 2 26067000 23168 13739 23072 15992 15492 21382 14695 16927 14919 5490.7 21923 12991 23143 16369 16157 21146 15003 17317 14711 5561.9 1 1 1 1 1 1 1 1 1 1 5510 1333 4846 5171 6128 6128 4638 TPSIQPSLLPHAAPFAK 17 Phospho (STY) _T(ph)PSIQPSLLPHAAPFAK_ T(0.738)PS(0.261)IQPSLLPHAAPFAK T(4.51)PS(-4.51)IQPS(-34.62)LLPHAAPFAK 0 0 1 0 P35658 P35658 P35658 NUP214 Nuclear pore complex protein Nup214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 771.765747070313 3 618.988638 1853.94409 37005.7443832942 2.007 0.0012423 246810 152.77 246820 152.78 771.763708550077 87.466 0.67716 87.466 87.142 87.819 0 78 22 5 0.773100567093183 0.00314130707085397 0.0315576383506214 1.224E-10 1 20387 189.47 154.85 3 27065000 8455.1 11414 8180.6 9497 5627 13702 9800.9 17767 12964 42978 7999.6 10772 8229.8 9935.8 5923.1 13678 9862.6 18959 12657 40881 1 1 1 1 1 1 1 1 1 1 5511 551 4847 5172 6129 6129 4452 TPSISKK 7 Phospho (STY) _T(ph)PSISKK_ T(0.925)PS(0.072)IS(0.003)KK T(11.12)PS(-11.12)IS(-24.28)KK 0 0 1 1 Q92619 Q92619 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 509.975555419922 3 280.812405 839.415384 44133.2674621628 1.8536 0.00052052 816070 229.16 816070 229.16 509.975307116089 45.831 0.70176 45.831 45.526 46.228 7.1054E-15 74 23 5 0.845662485529229 0.0146231490233113 0.176665990487855 0.052756 1 10540 63.283 31.062 3 189170000 210220 10973 211700 12952 58335 195820 64684 92094 18433 3857 198930 10377 211220 16117 68300 186820 64271 96513 20149 5763.2 1 1 1 1 1 1 1 1 1 1 5512 1612 4848 5173 6130 6130 4714 TPSLSPASSLDV 12 Phospho (STY) _TPSLS(ph)PASSLDV_ T(0.011)PS(0.011)LS(0.978)PASSLDV T(-19.49)PS(-19.49)LS(19.49)PAS(-67.54)S(-82.96)LDV 0 0 1 0 Q32P44 Q32P44 Q32P44 EML3 Echinoderm microtubule-associated protein-like 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.868896484375 2 627.286683 1252.55881 36363.2752203642 1.6516 0.001036 182660 114.58 182660 114.58 741.867955998155 85.434 0.71519 85.434 85.185 85.9 0 52 24 3 0.49596704366742 0.00168441765535087 0.0205539835629998 6.7076E-07 1 19939 138.76 123.62 5 19926000 7736.2 7914.5 8420.4 7256.4 7398.4 7784.2 7923.8 7813.4 7701.4 11595 7323 7472.8 8428 7499.3 7575.5 7801.1 8034.4 8185.7 7608.4 11099 1 1 1 1 1 1 1 1 1 1 5513 1126 4849 5174 6131 6131 1965 TPSNTPSAEADWSPGLELHPDYK 23 Phospho (STY) _TPSNTPSAEADWS(ph)PGLELHPDYK_ TPSNTPSAEADWS(0.999)PGLELHPDYK T(-50.7)PS(-41.36)NT(-42.48)PS(-33.77)AEADWS(33.77)PGLELHPDY(-96.85)K 0 0 1 0 Q9Y3Z3 Q9Y3Z3 Q9Y3Z3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1017.82678222656 3 864.714519 2591.12173 31980.3134509736 1.9913 0.0017219 176680 152.77 176680 152.78 1018.15800530588 79.327 0.42312 79.327 79.193 79.617 0 30 14 3 0.556981684408104 0.000372239789139262 0.0308437134850278 3.4359E-05 1 18629 121.5 92.847 6 7856900 5133.8 2681.2 5084.5 2242.8 2447.2 5917.9 1555.9 3782 2681.5 17985 4857.7 2530.3 5088.7 2388.6 2627.6 5774.9 1657.4 4418.3 2598.1 17022 1 1 1 1 1 1 1 1 1 1 5514 2272 4850 5175 6132 6132 4206 TPSPAAEDAREPEAK 15 Phospho (STY) _T(ph)PSPAAEDAREPEAK_ T(0.574)PS(0.426)PAAEDAREPEAK T(1.29)PS(-1.29)PAAEDAREPEAK 0 0 1 1 Q92797 Q92797 Q92797 SYMPK Symplekin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.356506347656 3 550.245325 1647.71415 37318.9980847269 2.0651 0.0011363 277650 152.78 277650 152.78 703.35470790504 38.986 0.69853 38.986 38.725 39.423 -7.1054E-15 45 23 4 0.832310288440376 0.00380104052016831 0.0376959866979744 8.6411E-05 1 8841 131.31 105.8 2 22646000 10765 35616 12827 38078 11666 14997 13226 22202 37907 6909.9 10194 33660 12787 38576 11953 16165 14063 22200 36356 7020.3 1 1 1 1 1 1 1 1 1 1 5515 1622 4851 5176 6133 6133 4718 TPSPLVLEGTIEQSSPPLSPTTK 23 Phospho (STY) _T(ph)PSPLVLEGTIEQSSPPLSPTTK_ T(0.5)PS(0.5)PLVLEGTIEQSSPPLSPTTK T(0)PS(0)PLVLEGT(-69.57)IEQS(-140.7)S(-147.19)PPLS(-172.2)PT(-182.4)T(-183.63)K 0 0 1 0 P33241 P33241 P33241 LSP1 Lymphocyte-specific protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 973.527587890625 3 820.415411 2458.2244 34093.9828364547 1.1507 0.00094404 186220 152.78 186220 152.78 973.526188231162 95.021 0.43032 95.021 94.71 95.14 0 34 14 3 0.683744213715973 0.000347929522384486 0.00621348909059587 3.0161E-12 1 22119 193.09 175 8 10805000 1964 3094.9 3181.5 2337.4 6104.7 3227.2 6491.2 4875 3162 32825 1863 2919.3 3170.1 2460.5 6024.8 3277.6 6497.8 5815.2 3261.1 31022 1 1 1 1 1 1 1 1 1 1 5516 531 4852 5177 6134 6134 863;4445 TPSPNSNEQQK 11 Phospho (STY) _TPS(ph)PNSNEQQK_ T(0.161)PS(0.839)PNSNEQQK T(-7.18)PS(7.18)PNS(-45.28)NEQQK 0 0 1 0 Q9H4E7 Q9H4E7 Q9H4E7 DEF6 Differentially expressed in FDCP 6 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 884.438720703125 2 655.274639 1308.53472 32692.7640857876 2.1572 0.0014136 349720 229.16 349720 229.16 884.939194003091 31.879 0.44132 31.879 31.645 32.087 0 40 14 4 0.981664352380061 0.00121342579959147 0.0292359203813107 3.3253E-10 1 7113 194.3 147.66 3 17954000 21399 8175.1 20400 8202.6 12751 20519 13532 12595 7447.7 1592.7 20246 7722.9 20507 8618.3 13397 19921 13571 12989 7606.8 1791.2 1 1 1 1 1 1 1 1 1 1 5517 1937 4853 5178 6135 6135 3509 TPSPPPPIPEDIALGK 16 Phospho (STY) _TPS(ph)PPPPIPEDIALGK_ T(0.452)PS(0.548)PPPPIPEDIALGK T(-0.84)PS(0.84)PPPPIPEDIALGK 0 0 1 0 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.403869628906 3 570.290094 1707.84845 37364.0787302807 1.743 0.00099399 267890 152.78 267890 152.78 723.066763753538 89.254 0.66553 89.254 88.882 89.548 0 44 22 3 0.981460510554548 0.00234018683730934 0.0459030704111794 0.00012546 1 20790 103.17 88.913 2 8240100 5937.2 7093.1 7143.2 6976.6 6703.8 7112.7 6771.2 7145.4 7190.4 11083 5622.6 6699.9 7118.2 7172.6 6830.3 7144.6 6900.7 7500 7077 10602 1 1 1 1 1 1 1 1 1 1 5518 1183 4854 5179 6136 6136 2063;4600 TPSSCSSSLDSIK 13 Phospho (STY) _T(ph)PSSCSSSLDSIK_ T(0.446)PS(0.446)S(0.107)CSSSLDSIK T(0)PS(0)S(-6.21)CS(-31.72)S(-34.81)S(-33.36)LDS(-77.34)IK 0 0 1 0 Q8NG31 Q8NG31 Q8NG31 CASC5 Protein CASC5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 636.647583007813 3 483.53734 1447.59019 39746.3647082512 1.6906 0.00081746 315950 152.78 315950 152.78 636.312544635985 61.544 0.53091 61.544 61.302 61.833 0 38 17 3 0.903448578070979 0.0013484132948179 0.0152927665063405 0.0066549 1 14434 89.506 63.071 7 10751000 10409 13819 12109 15151 9432.3 11147 10029 11461 14348 5453.8 9856.2 13062 12064 15411 9742.5 11366 10298 11649 13974 5400.6 1 1 1 1 1 1 1 1 1 1 5519 1524 4855 5180 6137 6137 2803;4694 TPSSEEISPTK 11 Phospho (STY) _TPSS(ph)EEISPTK_ T(0.286)PS(0.286)S(0.428)EEISPTK T(-1.75)PS(-1.75)S(1.75)EEIS(-82.4)PT(-111.41)K 0 0 1 0 Q15311 Q15311 Q15311 RALBP1 RalA-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 571.962097167969 3 419.186636 1254.53808 41204.7886601221 2.3011 0.00096458 364460 152.78 364460 152.78 571.961707620059 49.689 0.44388 49.689 49.481 49.925 -7.1054E-15 45 14 4 0.975163928726769 0.00204484353117942 0.0177029152853818 6.9418E-07 1 11515 145.29 125.45 5 16592000 21775 22399 22724 21693 17172 22652 16782 22710 23226 2469.5 20609 21156 22759 22332 17755 22668 17277 22852 22644 2850.9 1 1 1 1 1 1 1 1 1 1 5520 1069 4856 5181 6138 6138 1846;4572 TPSSEEISPTKFPGLYR 17 Phospho (STY) _T(ph)PSSEEISPTKFPGLYR_ T(0.641)PS(0.275)S(0.084)EEISPTKFPGLYR T(3.68)PS(-3.68)S(-8.84)EEIS(-62.55)PT(-101.11)KFPGLY(-175.14)R 0 0 1 1 Q15311 Q15311 Q15311 RALBP1 RalA-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 816.761474609375 3 663.650351 1987.92922 34717.7066564119 1.545 0.0010254 230210 152.78 230210 152.78 816.760600802478 79.876 0.60037 79.876 79.562 80.162 0 79 20 5 0.976830581356003 0.00551216473235528 0.02850954670041 3.4464E-11 1 18678 209.23 184.64 6 51960000 18751 19215 21888 18472 14341 21849 19923 21963 19801 14442 17755 18148 21777 19066 15078 21778 20008 22461 19542 14107 1 1 1 1 1 1 1 1 1 1 5521 1069 4857 5182 6139 6139 1846;4572 TPSSFRQPFTPTSR 14 Phospho (STY) _TPSS(ph)FRQPFTPTSR_ T(0.035)PS(0.166)S(0.799)FRQPFTPTSR T(-13.57)PS(-6.82)S(6.82)FRQPFT(-67.34)PT(-86.03)S(-91.26)R 0 0 1 1 P57740 P57740 P57740 NUP107 Nuclear pore complex protein Nup107 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 639.986083984375 3 563.597921 1687.77193 38388.6709300122 1.3282 0.00074857 135540 76.388 135540 76.388 640.320122867984 59.015 0.49084 59.015 58.756 59.247 0 42 16 3 0.985906354925642 0.00211141508205201 0.034630557737639 0.00014424 1 13810 109.72 71.624 6 17650000 10386 7331.8 10447 7292.7 7015.6 9992.4 7160.8 9069.2 7002.5 4447 9828 6925.9 10474 7533.7 7324 9892.2 7277.8 9266.8 6916.1 4397.3 1 1 1 1 1 1 1 1 1 1 5522 736 4858 5183 6140 6140 1221 TPSSNTLDDYMSCFR 15 Phospho (STY) _TPS(ph)SNTLDDYMSCFR_ T(0.272)PS(0.658)S(0.057)NT(0.012)LDDYMSCFR T(-3.83)PS(3.83)S(-10.62)NT(-17.22)LDDY(-72.62)MS(-65.8)CFR 0 0 1 0 P33981 P33981 P33981 TTK Dual specificity protein kinase TTK MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1051.94006347656 2 937.360259 1872.70596 NaN NaN NaN NaN NaN NaN NaN NaN 91.293 1 91.293 90.793 91.793 0 NaN NaN NaN 0.021921 1 21273 80.596 62.457 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5523 534 4859 5184 6141 6141 868 TPSSQNLLALLAR 13 Phospho (STY) _TPS(ph)SQNLLALLAR_ T(0.255)PS(0.727)S(0.018)QNLLALLAR T(-4.55)PS(4.55)S(-16.06)QNLLALLAR 0 0 1 0 O75385 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.966918945313 2 732.384523 1462.75449 34277.3963329453 1.3032 0.00095442 156450 114.58 156450 114.58 846.966252995168 101.09 0.14701 101.09 101.01 101.16 0 13 4 4 0.824357214699633 0.00277886824183379 0.164536741505585 0.00011135 1 23725 124.2 91.075 3 86950000 33222 25629 29115 21238 24847 27905 25723 27197 20593 52212 31421 24186 29502 22182 25475 27763 26001 28882 20537 49793 1 1 1 1 1 1 1 1 1 1 5524 181 4860 5185 6142 6142 318 TPSVAKSPEAK 11 2 Phospho (STY) _T(ph)PSVAKS(ph)PEAK_ T(0.983)PS(0.017)VAKS(1)PEAK T(17.57)PS(-17.57)VAKS(40.11)PEAK 0 0 2 1 Q9UI08 Q9UI08 Q9UI08 EVL Ena/VASP-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.682556152344 3 425.51916 1273.53565 37953.0874976321 1.7531 0.00074599 538550 229.16 538550 229.16 654.682342924056 46.547 0.77834 46.547 46.258 47.036 0 68 26 4 0.893614654083832 0.0056864368619345 0.0251367386731386 0.011369 1 10739 88.319 68.925 3 54575000 66403 12752 61266 13160 22449 64832 26929 38551 13339 49473 62815 12048 61520 14318 25123 62442 26824 41179 13738 47477 1 1 1 1 1 1 1 1 1 1 5525 2152 4861 5186 6143 6143 3876;4806 TPTPEPAEVETR 12 Phospho (STY) _T(ph)PTPEPAEVETR_ T(0.663)PT(0.337)PEPAEVETR T(2.95)PT(-2.95)PEPAEVET(-92.98)R 0 0 1 0 Q9UHY1 Q9UHY1 Q9UHY1 NRBP1 Nuclear receptor-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.396545410156 2 703.813597 1405.61264 33587.2518325856 2.1255 0.0014959 162800 114.58 162800 114.58 818.394645014305 42.328 0.62863 42.328 42.025 42.654 0 62 21 4 0.967825174341396 0.00106457698109207 0.0403798867182448 3.5545E-07 1 9700 160.23 106.66 3 29632000 12009 15163 11319 16043 13641 12327 15077 14355 17454 8398.7 11361 14329 11468 16359 13728 12563 15344 14574 17121 8240.6 1 1 1 1 1 1 1 1 1 1 5526 2151 4862 5187 6144 6144 4805 TPTSPLK 7 Phospho (STY) _TPTS(ph)PLK_ TPT(0.03)S(0.969)PLK T(-33.44)PT(-15.02)S(15.02)PLK 0 0 1 0 O60264 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.365966796875 2 412.201694 822.388835 39168.4661304144 1.3468 0.00055515 555950 229.16 555950 229.16 641.364833529005 51.673 1.4993 51.673 51.255 52.755 7.1054E-15 166 51 6 0.9224651381863 0.0121004864898166 0.0994747252487435 0.0014765 1 11968 115.86 69.527 3 2184200000 91190 116600 90425 109590 78524 80052 82141 90814 120250 8179.4 86286 110110 90958 112470 80476 81708 84482 90922 117030 9803.6 1 1 1 1 1 1 1 1 1 1 5527 138 4863 5188 6145 6145 235 TPTSSPASSPLVAK 14 Phospho (STY) _TPTSS(ph)PASSPLVAK_ T(0.001)PTS(0.001)S(0.997)PASSPLVAK T(-28.49)PT(-36.54)S(-29.27)S(28.49)PAS(-53.34)S(-82.19)PLVAK 0 0 1 0 Q14684 Q14684 Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.012939453125 2 711.847439 1421.68033 32469.2145251419 2.0529 0.0014613 321930 229.16 321930 229.17 941.011751508155 61.418 0.93468 61.418 60.776 61.71 -7.1054E-15 66 31 4 0.787290599895789 0.00197673139430915 0.0826639586280379 2.0761E-31 1 14388 305.46 254.68 6 29472000 21395 21110 22387 19373 20086 20927 19450 20934 21737 11805 20249 19932 22456 20023 20512 20930 19892 21354 21351 11600 1 1 1 1 1 1 1 1 1 1 5528 1020 4864 5189 6146 6146 1742 TPVQYSQQQNSPQK 14 Phospho (STY) _TPVQYSQQQNS(ph)PQK_ TPVQYSQQQNS(1)PQK T(-139.82)PVQY(-144.25)S(-98.05)QQQNS(98.05)PQK 0 0 1 0 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.703735351563 3 571.592836 1711.75668 36870.4763097489 2.0523 0.0011731 267280 152.78 267280 152.78 724.702671368721 45.131 0.67004 45.131 44.681 45.351 7.1054E-15 75 20 5 0.997113201217077 0.0114053171122768 0.111141334297661 1.3512E-10 1 10354 188.71 163.92 4 115310000 29959 22066 33277 19483 9990.2 30842 12668 23181 21106 5975.5 28361 20830 33037 20345 11559 30323 12997 23729 20467 6163.2 1 1 1 1 1 1 1 1 1 1 5529 603 4865 5190 6147 6147 995 TPVSGSLKSPVPR 13 Phospho (STY) _TPVSGSLKS(ph)PVPR_ TPVSGSLKS(1)PVPR T(-46.16)PVS(-43.57)GS(-44.24)LKS(43.57)PVPR 0 0 1 1 Q8NI27 Q8NI27 Q8NI27 THOC2 THO complex subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 622.023559570313 3 468.91307 1403.71738 39634.7226831326 1.1397 0.00053443 325810 152.78 325810 152.78 621.688455390014 55.864 0.5898 55.864 55.536 56.126 0 69 19 5 0.950981578652162 0.00598552667588647 0.124269595851571 0.0070596 1 13007 81.01 62.279 4 141310000 13566 25221 17342 22985 15885 16683 18371 18573 26111 8916.9 12851 23813 17232 23636 16249 17044 18793 18826 25435 8826.2 1 1 1 1 1 1 1 1 1 1 5530 1530 4866 5191 6148 6148 2809 TPVSPVK 7 Phospho (STY) _T(ph)PVSPVK_ T(0.669)PVS(0.331)PVK T(3.05)PVS(-3.05)PVK 0 0 1 0 P23443 P23443 P23443 RPS6KB1 Ribosomal protein S6 kinase beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.367736816406 2 404.204237 806.393921 39211.7428769242 2.0303 0.00082065 566950 229.16 566950 229.16 633.367123314862 48.834 0.6601 48.834 48.623 49.283 0 64 22 4 0.993016386999356 0.00734706506848749 0.119464470708912 0.01028 1 11327 91.318 31.968 2 143560000 90996 97572 102610 91990 65536 92348 74865 88949 104270 6703.4 86149 92141 102220 94799 68854 92519 76563 89556 101630 8370.6 1 1 1 1 1 1 1 1 1 1 5531 465 4867 5192 6149 6149 760;4426 TPVSPVKFSPGDFWGR 16 Phospho (STY) _TPVS(ph)PVKFSPGDFWGR_ T(0.027)PVS(0.973)PVKFSPGDFWGR T(-15.57)PVS(15.57)PVKFS(-48)PGDFWGR 0 0 1 1 P23443 P23443 P23443 RPS6KB1 Ribosomal protein S6 kinase beta-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.742248535156 3 619.629221 1855.86584 35551.5890420853 1.745 0.0010812 246560 152.78 246560 152.78 772.739332389717 94.795 0.65329 94.795 94.456 95.11 0 82 22 5 0.970115763185412 0.00787830557084887 0.124739925074598 1.2621E-05 1 22034 135.23 113 3 23150000 14855 16473 14395 14963 15886 18345 15426 15767 17238 24592 14055 15552 14539 15510 16028 18251 15774 16656 16932 23521 1 1 1 1 1 1 1 1 1 1 5532 465 4868 5193 6150 6150 760;4426 TQDPSSPGTTPPQAR 15 Phospho (STY) _TQDPSS(ph)PGTTPPQAR_ T(0.003)QDPS(0.304)S(0.657)PGT(0.029)T(0.007)PPQAR T(-23.43)QDPS(-3.34)S(3.34)PGT(-13.58)T(-19.67)PPQAR 0 0 1 0 Q13112 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 616.964904785156 3 540.573553 1618.69883 40111.0948023501 1.5652 0.0008461 141310 76.389 141310 76.39 616.963375381289 30.724 0.56485 30.724 30.465 31.03 0 62 18 5 0.862103405773014 0.00396958381525178 0.103518574254663 0.040017 1 6842 46.877 32.836 5 38244000 16346 15966 15830 14875 14035 14423 14009 15514 17965 3931 15466 15076 15947 15333 14352 14498 14370 15638 17558 4060.5 1 1 1 1 1 1 1 1 1 1 5533 924 4869 5194 6151 6151 1524 TQLEELEDELQATEDAK 17 Unmodified _TQLEELEDELQATEDAK_ 0 0 0 0 P35580;P35749;P35579 P35580;P35579 P35579 MYH10;MYH11;MYH9 Myosin-10;Myosin-11;Myosin-9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.755249023438 3 654.64438 1960.91131 34643.3304193772 1.8677 0.0012227 233370 152.77 233370 152.78 807.753723855623 99.595 0.22653 99.595 99.466 99.693 0 28 7 5 0.958510801376992 0.030653966936079 0.31642549490077 6.6422E-16 1 23158 225.68 202.2 1 247620000 69778 41261 76829 42707 97023 85028 110860 74928 48712 22466 66054 38986 77231 44442 97404 83255 110480 76226 50700 22888 1 1 1 1 1 1 1 1 1 1 5534 547;548 4870 5195 6152 6152 TQLLNPSLLFIK 12 2 Phospho (STY) _T(ph)QLLNPS(ph)LLFIK_ T(1)QLLNPS(1)LLFIK T(54.14)QLLNPS(54.14)LLFIK 0 0 2 0 REV__O43933 REV__O43933 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.039489746094 3 516.260909 1545.7609 38374.1135174555 1.549 0.0007997 295930 152.78 295930 152.78 669.038840480862 101.77 0.083378 101.77 101.73 101.82 0 4 2 2 0.944408600945835 0.00129772782115466 0.0441290786841984 0.056604 1 23964 54.143 23.316 1 18295000 8470.7 3678.6 7932.7 4327.7 4903.3 7936.1 4772.3 5178.2 4121.3 18694 8013.4 3478.8 7981.4 4461.9 5152.3 7794.3 4846.3 5864.2 4094.1 17722 1 1 1 1 1 1 1 1 1 1 + 5535 2325 4871 5196 6153 6153 4281;4859 TQLSPSIK 8 Phospho (STY) _TQLS(ph)PSIK_ TQLS(0.952)PS(0.048)IK T(-47.3)QLS(12.95)PS(-12.95)IK 0 0 1 0 Q8NFC6 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.403625488281 2 477.238808 952.463063 37830.6405838375 1.9517 0.00093142 480190 229.16 480190 229.16 706.402346766946 57.703 0.45677 57.703 57.478 57.935 7.1054E-15 39 15 3 0.855666125645158 0.00328012472370162 0.166114342296021 3.1952E-05 1 13502 140.78 92.689 3 25913000 35602 32751 40339 31999 29036 35954 33274 34023 29401 12793 33706 30935 40216 32965 30189 35862 33561 34588 29174 12834 1 1 1 1 1 1 1 1 1 1 5536 1521 4872 5197 6154 6154 2799 TQLSPSIKR 9 Phospho (STY) _TQLS(ph)PSIKR_ TQLS(0.998)PS(0.002)IKR T(-42.25)QLS(26.75)PS(-26.75)IKR 0 0 1 1 Q8NFC6 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 523.304382324219 3 370.528668 1108.56417 43847.4249120498 0.023587 8.7398E-06 412320 152.78 412320 152.78 523.30417534281 47.159 0.65256 47.159 46.66 47.313 0 44 22 4 0.972136680892602 0.00503941707460454 0.166250251319443 0.000355 1 10880 110.92 86 3 64845000 19091 14273 19552 15163 15936 18903 17666 19013 15117 3263.7 18067 13488 19620 15575 16407 18788 17829 19166 15024 3513.2 1 1 1 1 1 1 1 1 1 1 5537 1521 4873 5198 6155 6155 2799 TQLSQGRSSPQLDPLR 16 2 Phospho (STY) _TQLS(ph)QGRSS(ph)PQLDPLR_ T(0.21)QLS(0.791)QGRS(0.265)S(0.734)PQLDPLR T(-5.99)QLS(5.99)QGRS(-4.59)S(4.59)PQLDPLR 0 0 2 1 Q8ND56 Q8ND56 Q8ND56 LSM14A Protein LSM14 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.687744140625 3 648.297633 1941.87107 37055.9422678358 1.4563 0.00094409 117830 76.388 117830 76.389 724.687133857961 64.438 0.58292 64.438 64.182 64.765 0 51 19 4 0.839021315132575 0.00147298921096549 0.0219707763410086 0.013759 1 15147 68.291 43.498 6 9117000 10704 8845.4 10751 10327 11210 10113 10457 10107 9631.8 7744.1 10128 8364.3 10827 10509 11338 10161 10657 10372 9538.7 7525.9 1 1 1 1 1 1 1 1 1 1 5538 1502 4874 5199 6156 6156 2758;2759;2760 TQLSQGRSSPQLDPLRK 17 2 Phospho (STY) _TQLS(ph)QGRSS(ph)PQLDPLRK_ T(0.225)QLS(0.761)QGRS(0.247)S(0.767)PQLDPLRK T(-4.84)QLS(4.84)QGRS(-4.67)S(4.67)PQLDPLRK 0 0 2 2 Q8ND56 Q8ND56 Q8ND56 LSM14A Protein LSM14 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.330444335938 4 518.498785 2069.96603 39387.1021542894 1.9466 0.0010093 220990 114.58 220990 114.58 633.328861573092 63.636 0.86802 63.636 63.314 64.182 7.1054E-15 93 29 5 0.927668163828771 0.00531111917256299 0.0365524309523229 0.0079764 1 14910 84.602 59.706 6 21943000 8534.6 5680.1 7869.3 4689.7 7763.3 7453.1 9459.1 10265 6162.6 2443.2 8073.4 5360.1 7964 4920.1 7905.3 7387.1 9456.8 10261 6220.5 2538.2 1 1 1 1 1 1 1 1 1 1 5539 1502 4875 5200 6157 6157 2758;2759;2760 TQMAEVLPSPR 11 Phospho (STY) _TQMAEVLPS(ph)PR_ TQMAEVLPS(1)PR T(-119.32)QMAEVLPS(119.32)PR 0 0 1 0 P11388 P11388 P11388 TOP2A DNA topoisomerase 2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.390502929688 2 654.80452 1307.59449 35339.5277805864 1.8263 0.0011959 174990 114.58 174990 114.58 769.386076538505 65.201 1.0099 65.201 64.738 65.748 0 112 34 4 0.97435359839286 0.00229327771555963 0.0452756800321788 1.2978E-06 1 15268 141.65 101.07 2 57934000 24497 27806 28215 30397 16364 23850 19524 23000 30050 15309 23194 26282 28058 30948 17360 24216 20011 23564 29204 14948 1 1 1 1 1 1 1 1 1 1 5540 363 4876 5201 6158 6158 596 TQPDGTSVPGEPASPISQR 19 Phospho (STY) _TQPDGTSVPGEPAS(ph)PISQR_ TQPDGTSVPGEPAS(0.998)PIS(0.002)QR T(-61.66)QPDGT(-56.12)S(-49.2)VPGEPAS(28.21)PIS(-28.21)QR 0 0 1 0 Q14980 Q14980 Q14980 NUMA1 Nuclear mitotic apparatus protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.36279296875 3 668.640514 2002.89971 36373.1014373912 1.4856 0.00099331 114240 76.388 114240 76.389 745.362408740275 48.789 1.2686 48.789 48.184 49.453 0 144 43 6 0.984202370906622 0.00454261287253731 0.0181394235390671 3.695E-05 1 11279 118.9 97.667 5 442490000 13589 12808 14348 12419 14106 13385 14647 13029 15082 8642.1 12862 12097 14402 12791 14337 13385 14896 13344 14863 8439.1 1 1 1 1 1 1 1 1 1 1 5541 1036 4877 5202 6159 6159 1793 TQPSSGVDSAVGTLPATSPQSTSVQAK 27 Phospho (STY) _TQPSSGVDSAVGTLPATS(ph)PQSTSVQAK_ TQPSSGVDSAVGTLPAT(0.181)S(0.78)PQS(0.03)T(0.007)S(0.002)VQAK T(-112.37)QPS(-108.15)S(-103.04)GVDS(-85.35)AVGT(-52.99)LPAT(-6.33)S(6.33)PQS(-14.18)T(-20.36)S(-26.49)VQAK 0 0 1 0 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 785.904174804688 4 671.072097 2680.25928 34849.8862223116 1.6963 0.0011384 170740 114.58 170750 114.58 785.904406230449 64.105 0.69516 64.105 63.782 64.477 0 108 23 6 0.80250409705848 0.00492008537683794 0.0946559096839365 1.3301E-07 1 15030 148.31 124.57 10 91454000 12099 15407 11795 17200 12697 12489 11536 15410 18713 21494 11448 14565 11903 17475 12822 12806 11995 15992 18160 20596 1 1 1 1 1 1 1 1 1 1 5542 953 4878 5203 6160 6160 1601;4536 TQPSSGVDSAVGTLPATSPQSTSVQAK 27 Phospho (STY) _TQPSSGVDSAVGTLPAT(ph)SPQSTSVQAK_ TQPSSGVDSAVGTLPAT(0.613)S(0.386)PQSTSVQAK T(-118.46)QPS(-111.91)S(-106.37)GVDS(-89.74)AVGT(-50.14)LPAT(2.01)S(-2.01)PQS(-30.98)T(-38.39)S(-43.99)VQAK 0 0 1 0 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1047.5380859375 3 894.427038 2680.25928 30440.2823038214 1.4787 0.0013226 170810 152.78 170810 152.78 1047.53726951627 64.103 0.6071 64.103 63.839 64.446 0 81 20 5 0.985452410641079 0.00328127465785609 0.0626117022130822 1.4888E-11 1 15031 180.86 157.47 10 56307000 5206.4 11908 6120.1 11797 7848.1 5774.1 7943 9092.9 13862 10939 4930 11248 6131.4 12023 7869.2 6118.7 8242.8 9321.8 13426 10511 1 1 1 1 1 1 1 1 1 1 5543 953 4878 5203 6161 6161 1601;4536 TQQSFEK 7 Phospho (STY) _TQQS(ph)FEK_ TQQS(1)FEK T(-36.88)QQS(36.88)FEK 0 0 1 0 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.361572265625 2 474.19714 946.379727 37210.1388226726 2.4837 0.0011778 483270 229.16 483270 229.17 703.361496068442 44.928 0.75517 44.928 44.48 45.236 -7.1054E-15 45 25 3 0.660103802774953 0.00135084811405452 0.0290779119981912 0.0043086 1 10335 98.04 47.236 2 11007000 32595 25587 32698 25057 27973 32218 28669 29571 23772 6562.8 30844 24168 32863 25875 28671 31953 29015 29962 23664 6864 1 1 1 1 1 1 1 1 1 1 5544 993 4879 5204 6162 6162 1685 TQQSPISNGSPELGIK 16 Phospho (STY) _TQQS(ph)PISNGSPELGIK_ T(0.222)QQS(0.769)PIS(0.009)NGSPELGIK T(-5.4)QQS(5.4)PIS(-19.4)NGS(-41.87)PELGIK 0 0 1 0 Q15723 Q15723 Q15723 ELF2 ETS-related transcription factor Elf-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 732.056335449219 3 579.280258 1734.81894 37120.7619028005 1.9961 0.0011563 263730 152.77 263730 152.78 732.054634282193 67.342 0.76721 67.342 67.119 67.887 0 47 25 4 0.907974681465216 0.00160767689405258 0.0620413905077827 0.00010384 1 15825 109.32 79.776 4 9768600 9531.2 9976.3 10060 11368 10164 10590 10021 8934.3 9984.8 7960.2 9021 9432.1 10100 11575 10306 10643 10207 9265.7 9853.6 7702.2 1 1 1 1 1 1 1 1 1 1 5545 1090 4880 5205 6163 6163 1892 TQSAPLPQNAQALQHLVIQQQHQQFLEK 28 Phospho (STY) _TQS(ph)APLPQNAQALQHLVIQQQHQQFLEK_ T(0.195)QS(0.805)APLPQNAQALQHLVIQQQHQQFLEK T(-6.16)QS(6.16)APLPQNAQALQHLVIQQQHQQFLEK 0 0 1 0 P56524 P56524 P56524 HDAC4 Histone deacetylase 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.504455566406 4 826.671307 3302.65612 31946.7928001403 0.83286 0.0006885 138610 114.58 138610 114.58 941.503720755796 87.861 0.60909 87.861 87.616 88.225 0 101 20 8 0.832741909221309 0.00431631892678632 0.0299728479526571 2.8936E-56 1 20475 392.33 363.4 2 177900000 10398 5643.4 10719 6133.9 5745.6 10140 5977.3 8056.9 5238.3 37130 9840.7 5333.9 10715 6332.6 6126.9 10029 6053 9281.2 5200 35148 1 1 1 1 1 1 1 1 1 1 5546 730 4881 5206 6164 6164 1214 TQSAPLPQSTLAQLVIQQQHQQFLEK 26 Phospho (STY) _TQS(ph)APLPQSTLAQLVIQQQHQQFLEK_ T(0.136)QS(0.864)APLPQSTLAQLVIQQQHQQFLEK T(-8.03)QS(8.03)APLPQS(-81.64)T(-97.64)LAQLVIQQQHQQFLEK 0 0 1 0 Q9UKV0 Q9UKV0 Q9UKV0 HDAC9 Histone deacetylase 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.225891113281 4 761.141851 3040.5383 33516.8348052311 1.5266 0.0011619 150540 114.58 150540 114.58 875.974028432938 99.434 0.14212 99.434 99.352 99.494 0 16 4 6 0.980928571748203 0.0253270662985575 0.929730574975642 3.0339E-25 1 23110 280.03 258.66 4 130350000 54617 5195.9 53973 1900.7 8464.2 57481 8583.1 31089 3208.6 34100 51679 4889.6 53828 3045.8 11273 54869 8584 33235 3393.8 32829 1 1 1 1 1 1 1 1 1 1 5547 2179 4882 5207 6165 6165 3928 TQSIQGK 7 Phospho (STY) _TQS(ph)IQGK_ T(0.034)QS(0.966)IQGK T(-14.58)QS(14.58)IQGK 0 0 1 0 Q53HL2 Q53HL2 Q53HL2 CDCA8 Borealin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 650.359069824219 2 421.1944 840.374248 40312.9139643877 2.0345 0.0008569 544080 229.16 544080 229.16 650.358504726287 37.754 0.29418 37.754 37.628 37.922 0 18 9 2 0.959971802195269 0.00061006497827574 0.0163534566394742 0.021983 1 8559 67.704 32.901 2 11663000 26590 22681 28576 22108 21009 27931 21299 26189 25330 5777.9 25168 21423 28568 22829 21775 27726 21777 26511 24822 6046.7 1 1 1 1 1 1 1 1 1 1 5548 1154 4883 5208 6166 6166 2003 TQSLPVTEK 9 Phospho (STY) _TQS(ph)LPVTEK_ T(0.001)QS(0.999)LPVTEK T(-32.71)QS(32.71)LPVT(-34.51)EK 0 0 1 0 Q9NQW6 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.923461914063 2 541.760104 1081.50566 35836.8340611778 1.9924 0.0010794 423000 229.16 423000 229.16 770.922708291778 56.078 0.5345 56.078 55.833 56.367 0 45 17 3 0.812242663358056 0.00273948006257865 0.0564289077093803 9.3675E-05 2 13083 134.01 99.759 3 56013000 141280 77318 139850 76242 30138 139520 31362 85671 87691 29005 133680 73034 139560 79366 37132 136410 33407 88895 84136 29295 2 2 2 2 2 2 2 2 2 2 5549 2010 4884 5209 6167;6168 6168 3651 TQSPEFEAQSSK 12 Phospho (STY) _TQS(ph)PEFEAQSSK_ T(0.265)QS(0.735)PEFEAQSSK T(-4.43)QS(4.43)PEFEAQS(-105.38)S(-113.3)K 0 0 1 0 Q9H5H4 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.310302734375 3 473.532695 1417.57625 39235.4226692006 0.6352 0.00030079 322630 152.78 322630 152.78 626.30837576965 47.474 0.4583 47.474 47.344 47.803 7.1054E-15 47 18 4 1 0.000373403400905342 0.00236358018137656 3.6302E-07 1 10981 142.32 90.055 4 65038000 14617 24561 18331 24448 21641 15531 22014 19252 26302 5921.1 13846 23202 18286 24966 21776 16023 22508 19345 25770 6021 1 1 1 1 1 1 1 1 1 1 5550 1943 4885 5210 6169 6169 3525 TQSSPLPQSPQALQQLVMQQQHQQFLEK 28 Phospho (STY) _TQS(ph)SPLPQSPQALQQLVMQQQHQQFLEK_ T(0.135)QS(0.73)S(0.135)PLPQSPQALQQLVMQQQHQQFLEK T(-7.33)QS(7.33)S(-7.33)PLPQS(-54.09)PQALQQLVMQQQHQQFLEK 0 0 1 0 Q9UQL6 Q9UQL6 Q9UQL6 HDAC5 Histone deacetylase 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 947.494201660156 4 832.660245 3326.61188 32103.8266066414 1.764 0.0014688 137610 114.58 137610 114.58 947.494452908186 98.16 0.46898 98.16 97.904 98.373 0 66 15 6 0.978017499834263 0.00491991619071627 0.147669939003421 5.6707E-34 1 22764 297.73 278.48 4 18066000 4760.8 3137.2 4555.7 3811.5 2815.3 4393.3 2743.2 4075.6 3337.8 17961 4504.2 2967.4 4577.7 3881.7 2959.3 4407.5 2812.1 4641.6 3268.2 17006 1 1 1 1 1 1 1 1 1 1 5551 2231 4886 5211 6170 6170 4124 TQSVPVR 7 Phospho (STY) _TQS(ph)VPVR_ T(0.072)QS(0.928)VPVR T(-11.13)QS(11.13)VPVR 0 0 1 0 Q86YV0 Q86YV0 Q86YV0 RASAL3 RAS protein activator like-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.29248046875 2 433.710218 865.405882 42288.9746774773 0.75409 0.00032706 264190 114.58 264190 114.58 548.291996766822 34.99 0.52248 34.99 34.718 35.24 0 33 17 3 0.803461688740043 0.00291190216867412 0.0991500588294019 0.022865 1 7844 66.19 23.107 2 43292000 36721 11777 39881 13622 30428 41768 32813 28871 14062 537.59 34759 11136 39865 14327 31453 40450 32773 29475 14670 1174.4 1 1 1 1 1 1 1 1 1 1 5552 1404 4887 5212 6171 6171 2553 TQTPPLGQTPQLGLK 15 Phospho (STY) _TQT(ph)PPLGQTPQLGLK_ T(0.134)QT(0.866)PPLGQTPQLGLK T(-8.09)QT(8.09)PPLGQT(-66.97)PQLGLK 0 0 1 0 P78344 P78344 P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.3994140625 3 553.621955 1657.84404 37330.0212148324 2.0566 0.0011386 275960 152.78 275960 152.78 706.731564730948 78.112 1.2094 78.112 77.398 78.607 0 185 41 6 0.980300481713395 0.0024429996725759 0.0418847910398997 5.406E-07 2 18199 160.13 132.16 3 450460000 22126 19775 21627 20197 23214 18944 28080 23711 23103 20527 20935 18683 21834 20692 23528 19143 28213 24218 23007 19878 2 2 2 2 2 2 2 2 2 2 5553 796 4888 5213 6172;6173 6172 4501 TQTPPVSPAPQPTEER 16 Phospho (STY) _TQT(ph)PPVSPAPQPTEER_ T(0.268)QT(0.732)PPVSPAPQPTEER T(-4.37)QT(4.37)PPVS(-41.45)PAPQPT(-97.46)EER 0 0 1 0 Q14247 Q14247 Q14247 CTTN Src substrate cortactin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 682.338928222656 3 605.615529 1813.82476 37820.4995204119 1.6545 0.001002 126130 76.389 126140 76.39 682.003251615178 42.354 1.4873 42.354 41.166 42.654 0 136 51 5 0.988161243780885 0.0028315057201404 0.0324548440001501 7.5728E-05 1 9637 125.17 101.34 4 36684000 8863.4 12568 10220 10643 12616 9816.8 11517 12048 12665 4477.2 8392.1 11862 10240 11032 12646 9913.2 11807 12133 12448 4494.7 1 1 1 1 1 1 1 1 1 1 5554 1004 4889 5214 6174 6174 1703;4556;4557 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 Phospho (STY) _TQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK_ TQTPPVSPAPQPT(0.007)EERLPS(0.496)S(0.496)PVYEDAASFK T(-109.53)QT(-105.32)PPVS(-95.7)PAPQPT(-18.23)EERLPS(0)S(0)PVY(-43.24)EDAAS(-53.01)FK 0 0 1 1 Q14247 Q14247 Q14247 CTTN Src substrate cortactin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 942.478210449219 4 827.394606 3305.54932 32898.1670558248 1.8198 0.0015057 138480 114.58 138490 114.58 942.475119566327 78.385 0.4874 78.385 78.092 78.579 0 62 16 5 0.800442612526371 0.00289339388484362 0.0449066880174578 1.6783E-07 1 18383 147.36 130.56 8 15007000 4709.6 10674 4540.5 10949 3914.4 4938.8 3625 7560 12902 17353 4455.8 10085 4573.6 11129 4014 5284.2 3957.9 8004.5 12337 16515 1 1 1 1 1 1 1 1 1 1 5555 1004 4890 5215 6175 6175 1703;1704;1705;4556;4557 TRGSWSQPQPLK 12 Phospho (STY) _TRGS(ph)WSQPQPLK_ T(0.134)RGS(0.853)WS(0.014)QPQPLK T(-8.05)RGS(8.05)WS(-17.9)QPQPLK 0 0 1 1 Q86YV0 Q86YV0 Q86YV0 RASAL3 RAS protein activator like-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 641.680786132813 3 488.904686 1463.69223 39156.03368755 1.4984 0.00073255 312490 152.78 312490 152.78 641.68035287496 55.514 0.5206 55.514 55.251 55.771 0 39 17 3 0.92873307846855 0.0015493989255987 0.0166023280835124 6.2007E-05 1 12976 123.36 99.53 3 22429000 10758 6577.6 11247 6946.1 16339 11997 16384 12034 7871.2 5134.1 10182 6215.7 11359 7190.7 16273 11810 16442 12224 8127.6 5112.9 1 1 1 1 1 1 1 1 1 1 5556 1404 4891 5216 6176 6176 2554 TRKPSLSEK 9 Phospho (STY) _TRKPS(ph)LSEK_ T(0.066)RKPS(0.915)LS(0.019)EK T(-11.41)RKPS(11.41)LS(-16.86)EK 0 0 1 2 Q12912 Q12912 Q12912 LRMP Lymphoid-restricted membrane protein;Processed lymphoid-restricted membrane protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.023559570313 3 375.860306 1124.55909 40872.1787242905 2.0795 0.00078161 609700 229.16 609700 229.16 605.023354724778 42.417 0.65615 42.417 42.025 42.681 0 54 22 3 0.880649903613616 0.00284171452243464 0.0793256055664812 0.054984 1 9668 46.159 23.626 3 37405000 30403 14145 29390 14465 26149 28992 26726 23461 14901 3510.2 28765 13364 29614 15066 26725 28349 26853 23853 15205 3848.2 1 1 1 1 1 1 1 1 1 1 5557 913 4892 5217 6177 6177 1510 TRLSPPR 7 Phospho (STY) _TRLS(ph)PPR_ T(0.379)RLS(0.621)PPR T(-2.14)RLS(2.14)PPR 0 0 1 1 Q96PK6 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 379.210723876953 3 302.823415 905.448416 50251.7503062637 -0.34901 -0.00010569 252250 76.388 252250 76.388 379.211145308827 36.648 2.552 36.648 34.689 37.241 0 271 87 4 0.784290074526874 0.00149946402584433 0.0384361234949216 0.013756 1 7934 65.535 22.351 2 174560000 14161 14294 15998 15707 14823 16607 13699 15269 16977 1312.7 13407 13511 15987 16056 15099 16591 14089 15407 16612 1589.4 1 1 1 1 1 1 1 1 1 1 5558 1723 4893 5218 6178 6178 3172 TRLSPPR 7 Phospho (STY) _TRLS(ph)PPR_ TRLS(1)PPR T(-34.62)RLS(34.62)PPR 0 0 1 1 Q96PK6 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 568.314025878906 2 453.731484 905.448416 41743.4853691604 1.3318 0.00060428 252530 114.58 252530 114.58 568.313012357546 36.586 2.7052 36.586 34.606 37.311 0 305 93 5 0.96993591165894 0.0156917482144536 0.24274491420667 0.0038941 2 8125 98.04 42.82 2 372330000 178340 195590 199940 166000 166550 185470 178210 198340 200430 1301 168830 184600 199700 172560 171180 185200 181450 198490 196820 5748 2 2 2 2 2 2 2 2 2 1 5559 1723 4893 5218 6179;6180 6179 3172 TRNSGIWESPELDR 14 Phospho (STY) _TRNS(ph)GIWESPELDR_ T(0.365)RNS(0.635)GIWESPELDR T(-2.41)RNS(2.41)GIWES(-91.37)PELDR 0 0 1 1 O15085 O15085 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.318603515625 3 580.596469 1738.76758 38625.203109944 1.9426 0.0011279 131570 76.388 131570 76.389 657.318727555682 63.615 0.8052 63.615 63.285 64.09 0 72 27 4 0.960700209299909 0.00415626534806473 0.0467944101450312 3.4089E-07 1 14921 161.47 128.11 3 23938000 9434.1 7378.6 9372.4 5994.4 6863 9613.9 7222.5 8288.6 6738.1 4052 8926.8 6962.4 9411 6297.5 7117.4 9465.9 7321.4 8487.5 6669 4007.3 1 1 1 1 1 1 1 1 1 1 5560 78 4894 5219 6181 6181 140 TRPGSFQSLSDALSDTPAK 19 Phospho (STY) _TRPGS(ph)FQSLSDALSDTPAK_ T(0.002)RPGS(0.995)FQS(0.003)LSDALSDTPAK T(-27.77)RPGS(24.55)FQS(-24.55)LS(-90.1)DALS(-148.6)DT(-179.88)PAK 0 0 1 1 Q9H9C1 Q9H9C1 Q9H9C1 VIPAS39 Spermatogenesis-defective protein 39 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.432739257813 3 686.656165 2056.94666 33438.3982336439 1.4026 0.00096308 222490 152.78 222490 152.78 839.766125581812 79.886 0.78181 79.886 79.562 80.343 0 67 26 3 0.976822677234951 0.00366956027690414 0.0297011211892551 1.7452E-23 1 18671 281.75 243.02 6 100840000 8945.5 10292 12019 9555.3 14837 10202 14579 14007 11681 12381 8476.3 9717.9 11959 9866.4 14884 10268 14773 14275 11648 11982 1 1 1 1 1 1 1 1 1 1 5561 1968 4895 5220 6182 6182 3581 TRPKSPR 7 Phospho (STY) _TRPKS(ph)PR_ T(0.059)RPKS(0.941)PR T(-12)RPKS(12)PR 0 0 1 2 O15042 O15042 O15042 U2SURP U2 snRNP-associated SURP motif-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 460.602813720703 3 307.827048 920.459315 45793.7111057147 0.98733 0.00030393 496300 152.78 496300 152.78 460.602672978153 22.643 1.3577 22.643 22.313 23.671 3.5527E-15 160 46 6 0.980858121883529 0.037310611220802 0.435208041835213 0.053001 1 5070 48.698 27.726 2 287170000 20347 22606 18991 22509 19202 17252 18879 18875 24397 3929.3 19249 21355 19202 23033 19474 17554 19384 18989 23839 4136.7 1 1 1 1 1 1 1 1 1 1 5562 77 4896 5221 6183 6183 139 TRQSPQTLK 9 Phospho (STY) _TRQS(ph)PQTLK_ T(0.427)RQS(0.573)PQTLK T(-1.27)RQS(1.27)PQT(-35.66)LK 0 0 1 1 Q8IV63 Q8IV63 Q8IV63 VRK3 Inactive serine/threonine-protein kinase VRK3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 532.967407226563 3 380.192056 1137.55434 42818.3767916085 0.96558 0.00036711 401840 152.77 401840 152.78 533.300756843482 35.189 0.52915 35.189 34.86 35.389 0 38 17 3 0.739503054973024 0.00237878554924274 0.0210200611246895 0.034169 1 7913 45.891 23.693 3 21505000 20193 17327 21070 14395 14660 19458 11174 16222 17544 2715.9 19111 16351 21081 15040 15212 19243 11716 16480 17040 2932.8 1 1 1 1 1 1 1 1 1 1 5563 1410 4897 5222 6184 6184 2570 TRSESEK 7 Phospho (STY) _TRS(ph)ESEK_ T(0.01)RS(0.982)ES(0.008)EK T(-19.98)RS(19.98)ES(-20.82)EK 0 0 1 1 Q9BZ95 Q9BZ95 Q9BZ95 WHSC1L1 Histone-lysine N-methyltransferase NSD3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.856140136719 2 458.692222 915.369891 36760.3833974816 2.2464 0.0010304 499600 229.16 499600 229.16 687.854965874187 24.42 0.19962 24.42 24.282 24.481 0 10 6 2 0.979641330161241 0.000672445661229165 0.0135098889308926 0.038685 1 5464 54.784 26.272 3 3966800 6428.4 3655.5 5768.2 4138.8 3415 5050.1 3405.8 4101.9 3992 2218.1 6080.5 3456 5817.4 4234.8 3604.9 5013.6 3483.3 4218.1 3914.1 2183.5 1 1 1 1 1 1 1 1 1 1 5564 1875 4898 5223 6185 6185 3414 TRSLHGPCPVTTFGPK 16 Phospho (STY) _T(ph)RSLHGPCPVTTFGPK_ T(0.603)RS(0.397)LHGPCPVTTFGPK T(1.81)RS(-1.81)LHGPCPVT(-41.62)T(-64.74)FGPK 0 0 1 1 O95544 O95544 O95544 NADK NAD kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.053405761719 4 459.472202 1833.8597 40945.369999312 1.7681 0.00081237 249370 114.58 249380 114.58 574.304032988565 59.331 0.60232 59.331 59.075 59.678 0 74 20 5 0.950715763153186 0.00302546026621535 0.133879025906918 6.0025E-05 1 13890 120.32 93.295 4 29766000 12207 9503.6 12045 9297.3 8535.9 11456 9318.8 10733 9250 2263.1 11550 8976.5 12096 9593.5 8880.5 11382 9446.2 10862 9129.9 2379.3 1 1 1 1 1 1 1 1 1 1 5565 251 4899 5224 6186 6186 423;4360 TRSLPITIEMLK 12 Phospho (STY) _T(ph)RSLPITIEMLK_ T(0.756)RS(0.244)LPITIEMLK T(4.91)RS(-4.91)LPIT(-60.4)IEMLK 0 0 1 1 Q8IZ21 Q8IZ21 Q8IZ21 PHACTR4 Phosphatase and actin regulator 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.709289550781 3 494.598094 1480.77245 39096.813332904 2.0705 0.001024 308890 152.78 308890 152.78 647.373271848644 94.473 0.74508 94.473 94.14 94.885 0 88 25 5 0.954323600193109 0.0031098204209749 0.149863866603695 7.9811E-07 1 21954 147.17 108.53 3 27833000 6420.4 2758.9 7489.1 3279.8 10458 5743.1 11113 7100.1 3905.6 7012.5 6079.3 2609.2 7517.2 3375.4 10440 5676.9 11083 7280.6 4159.4 6767.4 1 1 1 1 1 1 1 1 1 1 5566 1439 4900 5225 6187 6187 2670;4667 TRSLSSLR 8 Phospho (STY) _TRS(ph)LSSLR_ T(0.12)RS(0.879)LSSLR T(-8.63)RS(8.63)LS(-36.63)S(-51.76)LR 0 0 1 1 O94915 O94915 O94915 FRYL Protein furry homolog-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 410.225158691406 3 333.837613 998.491009 49561.0434307415 -0.41738 -0.00013934 228820 76.388 228820 76.388 410.225306732378 40.806 0.42292 40.806 40.599 41.022 0 34 14 3 0.931566303079538 0.00147433489386802 0.0136522395807502 0.0006558 1 9281 112.7 47.425 4 19655000 18396 11210 15369 11876 15559 18372 16877 15755 12175 1728.1 17396 10593 15654 12258 15792 18095 16988 15956 12213 1991.8 1 1 1 1 1 1 1 1 1 1 5567 228 4901 5226 6188 6188 396 TRSLSSLR 8 Phospho (STY) _TRS(ph)LSSLR_ T(0.003)RS(0.98)LS(0.018)SLR T(-25.8)RS(17.46)LS(-17.46)S(-45.05)LR 0 0 1 1 O94915 O94915 O94915 FRYL Protein furry homolog-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 614.834106445313 2 500.252781 998.491009 39702.7337160123 1.0022 0.00050137 229050 114.58 229050 114.58 614.833571795063 40.797 0.57237 40.797 40.48 41.052 0 43 19 3 0.827107757174927 0.00498567940742979 0.0458183084285435 0.0011358 2 9300 109.11 25.804 4 77269000 90541 73355 99568 76184 77499 95283 93960 88275 76568 11902 85709 69312 99501 78358 80165 94589 94377 89176 76288 13250 2 2 2 2 2 2 2 2 2 2 5568 228 4901 5226 6189;6190 6189 396 TRSNPEGAEDR 11 Phospho (STY) _TRS(ph)NPEGAEDR_ T(0.112)RS(0.888)NPEGAEDR T(-9)RS(9)NPEGAEDR 0 0 1 1 Q9NWV8 Q9NWV8 Q9NWV8 BABAM1 BRISC and BRCA1-A complex member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 514.235717773438 3 437.849017 1310.52522 44522.2906887075 1.3602 0.00059556 174460 76.387 174460 76.387 514.235072865465 22.622 0.34635 22.622 22.459 22.805 0 33 11 4 0.848974238738274 0.0044964389025474 0.0299662863932845 9.2032E-05 1 5083 119.04 74.279 2 6394300 2957.7 2905.9 3310.3 3153.2 2994.5 3872.2 4140.9 3422.7 2724.2 1372.8 2800 2746.5 3311.3 3234.1 3072.3 3846.2 4121.3 3492 2748.1 1371.9 1 1 1 1 1 1 1 1 1 1 5569 2056 4902 5227 6191 6191 3722 TRSPDVISSASTALSQDIPEIASEALSR 28 Phospho (STY) _T(ph)RSPDVISSASTALSQDIPEIASEALSR_ T(0.506)RS(0.494)PDVISSASTALSQDIPEIASEALSR T(0.11)RS(-0.11)PDVIS(-32.77)S(-44.21)AS(-74.28)T(-89.28)ALS(-127.44)QDIPEIAS(-201.59)EALS(-211.3)R 0 0 1 1 Q6P2E9 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 803.660461425781 4 746.117036 2980.43904 33981.5944914563 1.6733 0.0012484 76784 57.29 76786 57.291 803.65821313967 100.77 0.3947 100.77 100.62 101.01 0 49 13 6 0.99044066466753 0.0171978574243032 0.18496743298173 8.6292E-18 1 23604 224.39 196.88 9 234980000 7733.2 12581 8240 11484 8464.5 8403.7 8982.1 10315 10965 41047 7319.5 11879 8271.8 11809 8585.7 8662.3 9172.5 11509 10735 38889 1 1 1 1 1 1 1 1 1 1 5570 1258 4903 5228 6192 6192 2234;4624 TRSPDVISSASTALSQDIPEIASEALSR 28 Phospho (STY) _T(ph)RSPDVISSASTALSQDIPEIASEALSR_ T(0.495)RS(0.495)PDVIS(0.003)S(0.003)AS(0.004)TALSQDIPEIASEALSR T(0)RS(0)PDVIS(-21.87)S(-21.87)AS(-20.62)T(-38.54)ALS(-75.71)QDIPEIAS(-123.7)EALS(-124.27)R 0 0 1 1 Q6P2E9 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1071.21484375 3 994.486956 2980.43904 30132.0512679207 1.6281 0.0016191 76810 76.387 76812 76.389 1071.2084962048 100.77 0.73965 100.77 100.59 101.33 0 83 25 7 0.24503443296076 0.000849333673342542 0.0554694797953413 0.0001091 1 23720 125.65 100.04 9 1071000000 4767.3 8038.8 5099.2 6265.1 6592.3 4667.2 5980.7 8187.7 6627.6 86311 4512.3 7583.8 5132.7 6515.4 6593.7 4956.2 6134.9 10677 6512 81462 1 1 1 1 1 1 1 1 1 1 5571 1258 4903 5228 6193 6193 2234;4624 TRSQEQEVLER 11 Phospho (STY) _TRS(ph)QEQEVLER_ TRS(1)QEQEVLER T(-55.09)RS(55.09)QEQEVLER 0 0 1 1 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 842.416931152344 2 727.835395 1453.65624 34060.9799739142 1.4465 0.0010528 157430 114.58 157430 114.58 842.41636819068 40.211 0.53298 40.211 40.006 40.539 0 30 17 2 0.983381378763032 0.000793155060952763 0.0150067814172404 3.0941E-11 1 9138 211.39 166.64 2 30363000 9479.7 13701 8836.7 9159.8 37278 10397 36310 18954 11498 5153.5 8967.8 12917 9281.4 9702.1 36113 10484 36328 18836 12397 5291.3 1 1 1 1 1 1 1 1 1 1 5572 2180 4904 5229 6194 6194 3940 TRSYDNLTTACDNTVPLASR 20 Phospho (STY) _TRS(ph)YDNLTTACDNTVPLASR_ T(0.178)RS(0.822)YDNLTTACDNTVPLASR T(-6.64)RS(6.64)Y(-101.78)DNLT(-61.7)T(-83.38)ACDNT(-177.34)VPLAS(-234.47)R 0 0 1 1 Q13615 Q13615 Q13615 MTMR3 Myotubularin-related protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.741149902344 3 779.017656 2334.03114 33262.5402028697 1.6686 0.0012998 98058 76.389 98060 76.39 855.73994549275 60.292 0.63281 60.292 59.995 60.628 0 58 21 4 0.952067694439615 0.00355899411633867 0.0194652245756481 2.6666E-23 1 14124 274.46 243.78 7 25232000 8631.7 8100.4 7777.9 8804.9 10904 8227.8 10628 10296 8382.6 12286 8164.6 7656.2 7918.8 8988.3 10875 8321.9 10770 10618 8366.4 11807 1 1 1 1 1 1 1 1 1 1 5573 973 4905 5230 6195 6195 1649 TSAVSSPLLDQQR 13 Phospho (STY) _TSAVSS(ph)PLLDQQR_ TSAVS(0.103)S(0.897)PLLDQQR T(-65.44)S(-69.64)AVS(-9.38)S(9.38)PLLDQQR 0 0 1 0 Q5T200 Q5T200 Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.934143066406 2 741.35342 1480.69229 33584.1175179601 1.5159 0.0011238 154560 114.58 154560 114.58 855.93521076165 56.274 0.65294 56.274 55.981 56.634 0 72 21 5 0.987643530667077 0.00282306808657085 0.0888814124149353 1.1204E-22 1 13111 264.75 224.16 4 74866000 19891 21383 22306 21890 16854 21168 18889 21658 23281 11031 18831 20202 22259 22433 17458 21277 19250 22038 22785 10888 1 1 1 1 1 1 1 1 1 1 5574 1183 4906 5231 6196 6196 2064 TSCSGSGERESPERK 15 Phospho (STY) _TSCSGSGERES(ph)PERK_ TSCSGSGERES(1)PERK T(-146.07)S(-143.34)CS(-127)GS(-83.81)GERES(83.81)PERK 0 0 1 2 Q9H8Y5 Q9H8Y5 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.015930175781 4 437.433274 1745.70399 41723.2483801595 1.5481 0.00067719 261940 114.58 261940 114.58 552.265014462818 24.342 0.60574 24.342 24.136 24.742 -3.5527E-15 63 20 6 0.969623950431827 0.00756599171245514 0.167584830908972 1.9328E-10 1 5431 176.48 146.51 5 25640000 3322.6 4701.8 3608.7 4563.9 3308.2 3801.4 3721.9 3681.6 5135.7 1467.2 3145.1 4440.9 3614.4 4682.2 3382.1 3845.6 3807.5 3741.8 5007.5 1466.7 1 1 1 1 1 1 1 1 1 1 5575 1963 4907 5232 6197 6197 3574 TSCSPQK 7 Phospho (STY) _TSCS(ph)PQK_ TSCS(0.999)PQK T(-35.02)S(-37.31)CS(35.02)PQK 0 0 1 0 Q8IV63;Q8IY33 Q8IV63;Q8IY33 Q8IY33 VRK3;MICALL2 Inactive serine/threonine-protein kinase VRK3;MICAL-like protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.33447265625 2 444.170068 886.325583 38464.772400728 2.5121 0.0011158 515940 229.16 515940 229.16 673.332947008443 29.823 0.61778 29.823 29.606 30.224 0 52 20 4 0.96791269649549 0.00459996546591719 0.124181320775766 0.0011713 1 6653 120.76 92.036 3 39779000 40596 37244 40756 40561 25537 41747 26500 35358 44908 2793.3 38415 35202 40845 41464 26844 41718 27433 35798 43530 3448.5 1 1 1 1 1 1 1 1 1 1 5576 1433;1410 4908 5233 6198 6198 2571 TSDTETEPSK 10 Phospho (STY) _T(ph)SDTETEPSK_ T(0.843)S(0.157)DTETEPSK T(7.31)S(-7.31)DT(-46.63)ET(-105.37)EPS(-169.85)K 0 0 1 0 P46013 P46013 P46013 MKI67 Antigen KI-67 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 816.893127441406 2 587.729198 1173.44384 34072.1537407715 1.5051 0.00088456 389920 229.16 389920 229.17 817.395744558371 35.782 0.57811 35.782 35.418 35.996 0 47 19 3 0.958699498434993 0.000606404686552526 0.0149459959951172 1.5444E-20 1 8020 258.01 203.91 5 12065000 17233 23060 17030 23589 11930 14426 11000 17733 25898 4317.1 16306 21787 17095 24041 12409 14918 11650 17790 24922 4475.5 1 1 1 1 1 1 1 1 1 1 5577 603 4909 5234 6199 6199 4465 TSDVNETQPPQSE 13 Phospho (STY) _TSDVNETQPPQS(ph)E_ TSDVNETQPPQS(1)E T(-90.26)S(-90.26)DVNET(-70.66)QPPQS(70.66)E 0 0 1 0 P35580 P35580 P35580 MYH10 Myosin-10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 871.3818359375 2 756.298508 1510.58246 33024.5217567535 1.0386 0.0007855 151500 114.58 151500 114.58 870.877888163493 34.903 1.2241 34.903 34.221 35.445 0 89 41 4 0.979129189425898 0.00112269638675431 0.0266028050485952 0.0022039 1 7795 98 88.642 4 32973000 5001.9 5059.7 4190.6 5606.3 10281 4490.7 10960 7121.5 6429.2 4222 4730 4782.8 4342.2 5705.1 10079 4592 11000 7168.7 6535.8 4140.3 1 1 1 1 1 1 1 1 1 1 5578 548 4910 5235 6200 6200 888 TSFSFQK 7 Phospho (STY) _T(ph)SFSFQK_ T(0.963)S(0.036)FS(0.001)FQK T(14.26)S(-14.26)FS(-29.43)FQK 0 0 1 0 Q9BPZ7 Q9BPZ7 Q9BPZ7 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 691.860229492188 2 462.696776 923.378999 37875.0978932733 2.3416 0.0010834 495280 229.16 495280 229.16 691.859659722835 71.708 0.58473 71.708 71.401 71.986 0 57 19 4 0.954199025863533 0.0018495097861491 0.0420888127789206 0.0028753 1 16801 102.62 71.249 3 30955000 18119 19518 20500 20326 30965 17219 29482 24280 20501 17628 17154 18442 20631 20771 30776 17520 29835 24612 20609 17161 1 1 1 1 1 1 1 1 1 1 5579 1800 4911 5236 6201 6201 4749 TSFSLSRPSSPR 12 Phospho (STY) _TSFSLSRPSS(ph)PR_ T(0.001)S(0.001)FS(0.001)LS(0.029)RPS(0.126)S(0.843)PR T(-31.01)S(-31.01)FS(-29.98)LS(-14.69)RPS(-8.25)S(8.25)PR 0 0 1 1 Q8N1G1 Q8N1G1 Q8N1G1 REXO1 RNA exonuclease 1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 544.612365722656 3 467.888924 1400.64494 42733.791102176 0.52803 0.00024706 163260 76.388 163260 76.388 544.27679579473 52.152 0.57102 52.152 51.835 52.406 0 49 19 3 0.961489098341767 0.00148855588472864 0.0137975625852568 0.040159 1 12128 43.991 19.737 6 22054000 12669 13846 12457 13952 8858.9 11858 9558.1 12146 13589 2869.1 11988 13080 12513 14286 9216.2 11988 9806.1 12259 13237 2982.7 1 1 1 1 1 1 1 1 1 1 5580 1456 4912 5237 6202 6202 2699 TSFSVGSDDELGPIR 15 Phospho (STY) _TSFS(ph)VGSDDELGPIR_ T(0.001)S(0.002)FS(0.675)VGS(0.322)DDELGPIR T(-30.23)S(-25.79)FS(3.22)VGS(-3.22)DDELGPIR 0 0 1 0 Q9NRY4 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 944.94970703125 2 830.366725 1658.7189 32103.1125138382 1.4628 0.0012147 137990 114.58 137990 114.58 944.948455438646 81.129 0.57385 81.129 80.99 81.564 0 43 19 3 0.963999614267781 0.000841851694739888 0.0436741061043663 1.2566E-22 1 19004 265.16 237.57 4 8438100 7437.4 6791.5 7147.4 6967 9975.6 7147.6 9747.9 9413.8 7476 42813 7036.6 6416.7 7247.9 7145.7 9950.9 7265.4 9871.3 10645 7472.9 40531 1 1 1 1 1 1 1 1 1 1 5581 2019 4913 5238 6203 6203 3670 TSFYLPK 7 Phospho (STY) _T(ph)SFYLPK_ T(0.681)S(0.319)FYLPK T(3.3)S(-3.3)FY(-63.33)LPK 0 0 1 0 Q9NS23 Q9NS23 Q9NS23 RASSF1 Ras association domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.381469726563 2 468.217344 934.420135 39027.447089415 2.4529 0.0011485 489440 229.16 489440 229.16 697.380452301885 82.277 0.48437 82.277 82.059 82.543 1.4211E-14 41 16 3 0.72941894863305 0.000556022152863045 0.013032516442231 0.0024985 1 19257 107.47 63.953 3 10353000 12417 13655 13412 13341 28624 13065 29327 22184 13963 10369 11753 12898 13635 13713 28145 13242 29398 22211 14429 10277 1 1 1 1 1 1 1 1 1 1 5582 2022 4914 5239 6204 6204 3674;4778 TSGSDEEQEGAGAINQNVALAIAGNNFNLK 30 Phospho (STY) _TSGS(ph)DEEQEGAGAINQNVALAIAGNNFNLK_ T(0.203)S(0.203)GS(0.595)DEEQEGAGAINQNVALAIAGNNFNLK T(-4.68)S(-4.68)GS(4.68)DEEQEGAGAINQNVALAIAGNNFNLK 0 0 1 0 Q8NF50 Q8NF50 Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 893.943603515625 4 778.86093 3111.41462 32960.5231744908 1.6195 0.0012614 147110 114.58 147120 114.58 893.692802612564 99.948 0.53209 99.948 99.807 100.34 0 78 18 8 0.982495193362404 0.0293515960012181 0.802947842755795 5.3806E-35 1 23283 309.32 294.86 3 260630000 12501 8321.9 14321 6098 16464 11953 14372 18589 10244 350620 11836 7848.7 14338 6491.1 16548 12464 14617 28954 10283 330580 1 1 1 1 1 1 1 1 1 1 5583 1520 4915 5240 6205 6205 2792;2793;4690 TSGSKER 7 Phospho (STY) _TSGS(ph)KER_ TS(0.002)GS(0.998)KER T(-38.99)S(-27.79)GS(27.79)KER 0 0 1 1 Q15424 Q15424 Q15424 SAFB Scaffold attachment factor B1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.845031738281 2 422.681657 843.348761 38755.9588049599 2.7351 0.0011561 542160 229.16 542170 229.16 651.844389173753 22.863 0.40399 22.863 22.689 23.093 3.5527E-15 36 13 4 0.996682962809524 0.00448429785765583 0.177699678130434 0.021622 1 5125 64.374 14.266 3 20790000 5838.3 7913.7 6847.9 7787.4 6047.1 6404.7 5267.4 7144.8 9228.2 1087.9 5528.3 7475.1 6826.1 7981.3 6176.6 6492.8 5507.6 7170.8 8937.5 1189.8 1 1 1 1 1 1 1 1 1 1 5584 1076 4916 5241 6206 6206 1865 TSGSQDSQPSPLALLAATCSK 21 Phospho (STY) _TSGSQDSQPS(ph)PLALLAATCSK_ TSGSQDS(0.002)QPS(0.998)PLALLAATCSK T(-47.3)S(-47.3)GS(-48.08)QDS(-28.2)QPS(28.2)PLALLAAT(-116.75)CS(-125.72)K 0 0 1 0 Q02446 Q02446 Q02446 SP4 Transcription factor Sp4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 886.447875976563 3 733.671486 2197.99263 33931.8587578491 1.4663 0.0010758 208240 152.78 208240 152.78 886.447268139043 95.17 0.48512 95.17 94.797 95.282 -1.4211E-14 31 16 3 0.94036409155438 0.000296805026761696 0.00352264168914312 6.5134E-08 1 22153 155.73 135.89 7 10818000 3482.3 4331.3 4697.3 4540.5 3376.5 5056.6 4476.7 4251.8 5343.5 16888 3299.7 4092.8 4645.9 4657.6 3520.8 5067.2 4527.8 4804.9 5235.7 16000 1 1 1 1 1 1 1 1 1 1 5585 850 4917 5242 6207 6207 1372 TSGSSSSDVTK 11 Phospho (STY) _TSGSS(ph)SSDVTK_ TSGS(0.033)S(0.832)S(0.076)S(0.059)DVTK T(-55.03)S(-57.89)GS(-14.04)S(10.39)S(-10.39)S(-11.51)DVT(-51.26)K 0 0 1 0 Q5M775 Q5M775 Q5M775 SPECC1 Cytospin-B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.39306640625 2 568.229365 1134.44418 34924.8998460213 1.9363 0.0011003 403290 229.16 403300 229.16 797.392404151436 33.962 0.54559 33.962 33.676 34.221 0 43 18 4 0.649481489354645 0.00147611512365698 0.0295751119335565 2.2979E-10 1 7594 200.19 155.05 7 27272000 62574 21176 60647 22696 27980 60953 29720 38444 24451 4359.4 59203 20013 60782 23826 30343 59115 30024 39566 24349 4994.7 1 1 1 1 1 1 1 1 1 1 5586 1173 4918 5243 6208 6208 2032 TSISDPPESPPLLPPREPVR 20 Phospho (STY) _TSISDPPES(ph)PPLLPPREPVR_ TSIS(0.001)DPPES(0.999)PPLLPPREPVR T(-40.03)S(-40.03)IS(-29.7)DPPES(29.7)PPLLPPREPVR 0 0 1 1 Q07889 Q07889 Q07889 SOS1 Son of sevenless homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 832.105651855469 3 755.382264 2263.12496 34548.8224044326 1.5845 0.0011969 101120 76.388 101130 76.389 832.103847670488 70.367 1.911 70.367 69.374 71.285 0 161 65 4 0.664914591989083 0.00234320899039293 0.0275437450563001 0.0077063 1 16484 80.702 59.104 4 19386000 12922 14388 13705 12457 17483 15099 20162 16739 14688 19361 12230 13581 13806 12951 17551 15074 20245 17310 14725 18619 1 1 1 1 1 1 1 1 1 1 5587 883 4919 5244 6209 6209 1433 TSLAEDSCLGRHSPVPR 17 Phospho (STY) _TSLAEDSCLGRHS(ph)PVPR_ TSLAEDS(0.008)CLGRHS(0.992)PVPR T(-44.62)S(-40.35)LAEDS(-20.95)CLGRHS(20.95)PVPR 0 0 1 1 Q13469 Q13469 Q13469 NFATC2 Nuclear factor of activated T-cells, cytoplasmic 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.353698730469 3 654.634818 1960.88262 36487.4035959156 1.1752 0.0007693 116680 76.385 116680 76.386 731.355049164622 46.467 0.34461 46.467 46.258 46.602 -7.1054E-15 37 11 4 0.638717409872624 0.00218974144299084 0.0098282038359504 0.011214 1 10733 70.538 59.483 4 23899000 21556 31805 21390 30821 19263 27612 18979 26714 35528 7625.6 20397 30040 21522 31655 19685 27823 19785 27060 34353 7798.7 1 1 1 1 1 1 1 1 1 1 5588 959 4920 5245 6210 6210 1614 TSLEVSPNPEPPEKPVRTPEAK 22 Phospho (STY) _TSLEVSPNPEPPEKPVRT(ph)PEAK_ TSLEVSPNPEPPEKPVRT(1)PEAK T(-115.73)S(-115.73)LEVS(-87.66)PNPEPPEKPVRT(87.66)PEAK 0 0 1 2 Q9UBW5 Q9UBW5 Q9UBW5 BIN2 Bridging integrator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.438659667969 4 621.311085 2481.21523 35189.9369423862 1.8802 0.0011682 276630 171.87 276630 171.87 793.435194214061 58.744 0.55617 58.744 58.404 58.96 0 41 18 3 0.957100459021496 0.00202383709430276 0.0153859072689842 4.0309E-08 1 13764 161 145.75 4 18597000 17852 7237.6 17184 8078.5 12553 17752 13166 13322 7038.7 12378 16890 6841.9 17287 8398.9 13015 17329 13204 13908 7204.9 11964 1 1 1 1 1 1 1 1 1 1 5589 2131 4921 5246 6211 6211 4801 TSLFANR 7 Phospho (STY) _TS(ph)LFANR_ T(0.234)S(0.766)LFANR T(-5.16)S(5.16)LFANR 0 0 1 0 Q99490 Q99490 Q99490 AGAP2 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.285034179688 2 444.702393 887.390232 42142.4004721096 1.7455 0.00077622 257660 114.58 257660 114.58 559.284243543469 63.746 0.51492 63.746 63.433 63.948 0 31 17 2 0.766315273938642 0.000594657860331161 0.0146951443191917 0.035801 1 14997 58.246 33.727 2 12545000 15575 10334 14996 9733.8 12078 14422 13876 13694 10548 10592 14736 9758.9 15101 10106 12452 14258 13948 14084 10549 10290 1 1 1 1 1 1 1 1 1 1 5590 1767 4922 5247 6212 6212 3252 TSLGSLKR 8 Phospho (STY) _TSLGS(ph)LKR_ T(0.012)S(0.052)LGS(0.935)LKR T(-18.82)S(-12.51)LGS(12.51)LKR 0 0 1 1 Q6T4P5 Q6T4P5 Q6T4P5 LPPR3 Lipid phosphate phosphatase-related protein type 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 467.274017333984 3 314.498709 940.474296 45655.7420146036 0.4982 0.00015668 485770 152.78 485770 152.78 467.273809163834 52.471 0.45809 52.471 52.238 52.697 7.1054E-15 38 15 3 0.954199105123543 0.00200698713799275 0.0352458959380662 0.041862 1 12205 45.603 20.129 3 15031000 28153 12487 30711 12132 4917.8 29934 6304.5 17264 13414 1613 26650 11794 30464 12765 6539.8 29054 6545.6 17856 12934 1918.4 1 1 1 1 1 1 1 1 1 1 5591 1277 4923 5248 6213 6213 2275 TSLPLSPVK 9 Phospho (STY) _TSLPLS(ph)PVK_ TSLPLS(1)PVK T(-39.81)S(-42.65)LPLS(39.81)PVK 0 0 1 0 Q86XL3 Q86XL3 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.435485839844 2 511.270108 1020.52566 37596.7717641108 2.2093 0.0011296 448220 229.16 448230 229.16 740.433328739742 73.569 0.42857 73.569 73.356 73.785 0 32 14 3 0.668077249711521 0.000996660296747039 0.025593086167244 0.00028119 1 17264 123.67 86.115 3 17334000 16040 17342 17049 15955 18211 16745 15755 17910 16819 17133 15182 16374 17119 16479 18378 16796 16184 18436 16550 16547 1 1 1 1 1 1 1 1 1 1 5592 1396 4924 5249 6214 6214 2537 TSPAPWK 7 Phospho (STY) _T(ph)SPAPWK_ T(0.687)S(0.313)PAPWK T(3.41)S(-3.41)PAPWK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.858337402344 2 433.694036 865.373519 38440.7756967685 2.5831 0.0011203 528400 229.16 528400 229.16 662.85723624814 61.908 0.67092 61.908 61.566 62.237 0 60 22 4 0.831837724936636 0.00298296854430346 0.0518167781131763 0.0022696 2 14538 110.41 62.805 2 41169000 76886 80968 77927 80624 56133 75851 54494 71422 88298 15012 72758 76486 78138 82727 58259 76216 56474 72265 85690 15788 2 2 2 2 2 2 2 2 2 2 5593 2226 4925 5250 6215;6216 6216 4104;4832 TSPAPWKR 8 Phospho (STY) _T(ph)SPAPWKR_ T(0.63)S(0.37)PAPWKR T(2.3)S(-2.3)PAPWKR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 494.274658203125 3 341.49882 1021.47463 45419.6157065321 0.31437 0.00010736 447370 152.78 447370 152.78 494.27428397547 50.643 0.68789 50.643 50.304 50.992 0 57 23 4 0.832474677481966 0.000603736364077784 0.00821621452811301 0.031443 1 11816 76.465 59.833 2 18946000 11789 10356 12532 10769 11573 13693 11105 10858 10418 2064.9 11158 9785.2 12563 11079 11793 13563 11308 11063 10309 2195.6 1 1 1 1 1 1 1 1 1 1 5594 2226 4926 5251 6217 6217 4104;4832 TSPASLDFPESQKSSR 16 Phospho (STY) _TSPASLDFPES(ph)QKSSR_ TSPASLDFPES(0.638)QKS(0.181)S(0.181)R T(-95.24)S(-92.96)PAS(-62.22)LDFPES(5.47)QKS(-5.47)S(-5.47)R 0 0 1 1 Q96JM3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.052551269531 3 606.275284 1815.80402 35904.5449951231 1.5252 0.00092467 251990 152.78 251990 152.78 759.385347597145 62.631 0.5559 62.631 62.376 62.932 7.1054E-15 44 18 3 0.818838059737339 0.00177861914884255 0.0337856428310919 0.00037457 1 14700 100.67 69.702 6 12205000 11317 12398 13644 13424 12557 11407 11832 13240 12893 24613 10717 11718 13590 13689 12798 11593 12108 13951 12676 23483 1 1 1 1 1 1 1 1 1 1 5595 1699 4927 5252 6218 6218 3128;3129;4728 TSPDPSPVSAAPSK 14 Phospho (STY) _T(ph)SPDPSPVSAAPSK_ T(0.499)S(0.499)PDPS(0.002)PVSAAPSK T(0)S(0)PDPS(-23.39)PVS(-71.33)AAPS(-115.09)K 0 0 1 0 Q13469 Q13469 Q13469 NFATC2 Nuclear factor of activated T-cells, cytoplasmic 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.328063964844 3 474.216707 1419.62829 38789.2463477145 2.22 0.0010528 322170 152.78 322170 152.78 626.993181139571 49.423 0.39965 49.423 49.228 49.628 7.1054E-15 38 13 3 0.975938858750257 0.00193532663221209 0.00814128315566922 0.00014364 1 11478 120.63 89.399 5 17874000 8041 17569 8772.7 19682 7941.7 8505.7 8351.5 11669 20175 4619.2 7611.6 16609 8782.2 19900 8125.3 9072.9 8805.2 11722 19405 4619.6 1 1 1 1 1 1 1 1 1 1 5596 959 4928 5253 6219 6219 1615;4539 TSPDRDK 7 Phospho (STY) _TS(ph)PDRDK_ T(0.189)S(0.811)PDRDK T(-6.31)S(6.31)PDRDK 0 0 1 1 Q7L4I2 Q7L4I2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.850708007813 2 449.686939 897.359326 37512.6588172656 1.7209 0.00077387 509610 229.16 509610 229.16 678.850067512831 26.454 0.2906 26.454 26.304 26.595 0 17 9 3 0.975874625264488 0.00112616560966572 0.026611943106678 0.014625 1 5900 77.662 27.056 2 5201600 8025.9 8766.8 8159.5 8747.7 7547.8 7564.6 7314.9 7597.8 8567.8 2119.2 7595.1 8281.6 8200.5 8964.1 7693.5 7639.6 7491.5 7683.7 8400.7 2171.4 1 1 1 1 1 1 1 1 1 1 5597 1318 4929 5254 6220 6220 2360 TSPDSLRR 8 Phospho (STY) _T(ph)SPDSLRR_ T(0.955)S(0.045)PDSLRR T(13.26)S(-13.26)PDS(-47.26)LRR 0 0 1 1 Q9BRL6 Q9BRL6 Q9BRL6 SRSF8 Serine/arginine-rich splicing factor 8 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.817443847656 2 506.234588 1010.45462 NaN NaN NaN NaN NaN NaN NaN NaN 29.249 1 29.249 28.749 29.749 0 NaN NaN NaN 0.00081863 1 6515 115.78 41.317 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5598 1811 4930 5255 6221 6221 4752 TSPDTLR 7 Phospho (STY) _TS(ph)PDTLR_ T(0.183)S(0.817)PDTLR T(-6.5)S(6.5)PDT(-86.33)LR 0 0 1 0 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 549.773803710938 2 435.191858 868.369162 41939.4346448167 0.87566 0.00038108 263290 114.58 263290 114.58 549.773447935124 35.606 1.1326 35.606 35.211 36.344 0 94 38 5 0.992065595241749 0.014707822592258 0.48485413328135 3.7761E-09 1 7989 210.05 74.205 3 261950000 54850 77299 50323 75474 70055 49371 69496 73577 80827 9175.1 51885 73011 51173 77186 69929 50972 71078 73142 79272 10342 1 1 1 1 1 1 1 1 1 1 5599 832 4931 5256 6222 6222 1341;4505 TSPDTLRR 8 Phospho (STY) _T(ph)SPDTLRR_ T(0.954)S(0.046)PDTLRR T(13.14)S(-13.14)PDT(-60.49)LRR 0 0 1 1 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.824829101563 2 513.242413 1024.47027 39270.5274106427 1.6207 0.00083182 223250 114.58 223250 114.58 627.824215244404 29.149 0.50474 29.149 28.896 29.401 0 62 16 5 0.828073364124653 0.00898657008449023 0.22567198377747 0.0010407 1 6466 125.18 41.099 3 216040000 27818 29946 28175 32222 32244 23783 34008 30328 37234 4294 26325 28302 28403 32810 32509 24305 34620 30297 36602 4745.2 1 1 1 1 1 1 1 1 1 1 5600 832 4932 5257 6223 6223 1341;4505 TSPENVQDR 9 Phospho (STY) _TS(ph)PENVQDR_ T(0.013)S(0.987)PENVQDR T(-18.66)S(18.66)PENVQDR 0 0 1 0 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.815002441406 2 563.232242 1124.44993 38329.8687651965 2.0942 0.0011795 203440 114.58 203440 114.58 677.813646110845 28.283 0.31315 28.283 28.122 28.435 0 29 10 4 0.940424179100833 0.00271763272369188 0.0762599933513266 4.3902E-10 2 6294 210.44 108.38 2 15556000 17618 25244 16075 25699 19695 17197 18615 22884 27624 7945.8 16665 23850 16317 26222 19766 17703 19247 22973 26874 8011.5 2 2 2 2 2 2 2 2 2 2 5601 655 4933 5258 6224;6225 6224 1103 TSPGSPR 7 Phospho (STY) _TSPGS(ph)PR_ T(0.015)S(0.039)PGS(0.945)PR T(-17.88)S(-13.83)PGS(13.83)PR 0 0 1 0 Q9H6F5 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.747711181641 2 391.165643 780.316733 43733.2989112852 1.2595 0.00049268 292920 114.58 292920 114.58 505.746997263549 23.35 0.37732 23.35 23.207 23.585 -3.5527E-15 22 12 3 0.739070219256807 0.00136409157251024 0.046069290898988 0.044888 1 5250 53.753 6.1538 3 1886400 3440.2 2951.1 3190.7 3201 3568.4 3029.5 2724.1 2838.1 3128.4 4187.9 3254.4 2789.2 3230.2 3268.7 3587.4 3049.8 2824.5 2980.4 3069.6 4009.1 1 1 1 1 1 1 1 1 1 1 5602 1944 4934 5259 6226 6226 3534 TSPIMSPR 8 Phospho (STY) _T(ph)SPIMSPR_ T(0.5)S(0.5)PIMSPR T(0)S(0)PIMS(-34.82)PR 0 0 1 0 Q13469 Q13469 Q13469 NFATC2 Nuclear factor of activated T-cells, cytoplasmic 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.29931640625 2 484.717185 967.419818 40804.0417579651 1.4358 0.00069594 236390 114.58 236390 114.58 599.297650555566 46.871 0.49061 46.871 46.632 47.122 -7.1054E-15 31 16 2 0.541927465601884 0.00104580000998391 0.00941254069982817 0.015781 1 10825 81.263 51.078 3 12965000 12774 23247 12885 23555 14115 14056 14839 17713 25323 5259.5 12088 21962 12984 24014 14271 14569 15357 17785 24542 5362.4 1 1 1 1 1 1 1 1 1 1 5603 959 4935 5260 6227 6227 1616;4540 TSPINEDIR 9 Phospho (STY) _T(ph)SPINEDIR_ T(0.948)S(0.052)PINEDIR T(12.62)S(-12.62)PINEDIR 0 0 1 0 Q9P2R6 Q9P2R6 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.334838867188 2 562.752811 1123.49107 36652.4957984953 0.92154 0.0005186 203610 114.58 203610 114.58 677.334652819794 48.401 0.44139 48.401 48.123 48.564 7.1054E-15 30 14 3 0.989628425313885 0.00233390356275444 0.0526908864621413 7.4329E-06 1 11228 151.13 85.5 2 30245000 24663 30533 25470 26139 30277 24915 31483 28919 30508 11277 23341 28818 25662 27087 30457 25100 31963 29192 30144 11288 1 1 1 1 1 1 1 1 1 1 5604 2114 4936 5261 6228 6228 4798 TSPINLGLNVNDLLK 15 Phospho (STY) _T(ph)SPINLGLNVNDLLK_ T(0.5)S(0.5)PINLGLNVNDLLK T(0)S(0)PINLGLNVNDLLK 0 0 1 0 P50616 P50616 P50616 TOB1 Protein Tob1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.074523925781 3 564.29736 1689.87025 36922.367803164 1.2282 0.00069307 270740 152.78 270740 152.78 717.406599667673 101.34 0.17372 101.34 101.22 101.39 0 12 5 4 0.905740820727441 0.00704938406926887 0.21262634112565 1.4859E-08 1 23806 175.59 143.95 2 41441000 22220 21378 21274 20583 9144.7 23726 10457 19175 23342 35864 21022 20191 21330 21233 10027 23652 10934 20491 22485 34214 1 1 1 1 1 1 1 1 1 1 5605 668 4937 5262 6229 6229 1125;4475 TSPKPAVVETVTTAK 15 Phospho (STY) _TS(ph)PKPAVVETVTTAK_ T(0.153)S(0.847)PKPAVVETVTTAK T(-7.44)S(7.44)PKPAVVET(-50.33)VT(-87.02)T(-99.47)AK 0 0 1 1 P56192 P56192 P56192 MARS Methionine--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.107849121094 3 536.946328 1607.81715 36266.45462537 2.2853 0.0012271 426790 229.16 426790 229.16 766.108482722285 66.697 0.54677 66.697 66.374 66.921 0 75 18 5 0.89999355591642 0.0033149223663091 0.0620931028247912 1.889E-10 1 15621 176.7 160.94 5 50919000 14619 22083 16085 22466 13788 14374 14905 17356 25052 9525.4 13839 20863 16086 22914 14154 14824 15397 17581 24289 9371 1 1 1 1 1 1 1 1 1 1 5606 728 4938 5263 6230 6230 1209 TSPLVSQNNEQGSTLR 16 Phospho (STY) _T(ph)SPLVSQNNEQGSTLR_ T(0.458)S(0.458)PLVS(0.083)QNNEQGSTLR T(0)S(0)PLVS(-7.41)QNNEQGS(-119.92)T(-122.68)LR 0 0 1 0 Q15652 Q15652 Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.005432128906 3 604.28255 1809.82582 38194.1343172216 1.0647 0.00064339 126410 76.388 126410 76.389 681.005719061502 50.347 0.49022 50.347 50.128 50.618 7.1054E-15 45 16 4 0.931444812940408 0.00263706357573084 0.019950075821532 8.8444E-07 1 11694 141.55 109.48 5 24004000 14093 11714 13594 11566 12721 15173 13678 14467 12066 5916.5 13334 11065 13708 11942 12973 15050 13833 14717 11974 5905.9 1 1 1 1 1 1 1 1 1 1 5607 1086 4939 5264 6231 6231 1887;4578 TSPPLLDR 8 Phospho (STY) _T(ph)SPPLLDR_ T(0.963)S(0.037)PPLLDR T(14.1)S(-14.1)PPLLDR 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 604.318359375 2 489.736432 977.458312 40132.946959707 1.3411 0.00065679 233970 114.58 233970 114.58 604.318398355764 56.961 1.3336 56.961 56.541 57.875 0 176 45 6 0.995401285622526 0.00295554731084639 0.098281042432059 2.3156E-08 2 13248 187.23 126.64 2 1301300000 36258 34533 36973 34413 29397 34555 31201 32473 36669 8030.8 34312 32621 37099 35344 30310 34619 31823 32896 35949 8313.5 2 2 2 2 2 2 2 2 2 2 5608 2226 4940 5265 6232;6233 6232 4837 TSPQVLGSILK 11 Phospho (STY) _TS(ph)PQVLGSILK_ T(0.3)S(0.7)PQVLGSILK T(-3.68)S(3.68)PQVLGS(-90.99)ILK 0 0 1 0 Q7Z417 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.989868164063 2 611.825779 1221.637 34525.4834469122 1.4314 0.00087577 374560 229.16 374560 229.16 840.9887280118 91.585 0.56984 91.585 91.34 91.91 -1.4211E-14 62 19 4 0.900616346752715 0.00207187471335361 0.0519114540789496 1.4009E-11 1 21313 212.55 154.31 3 41152000 21861 24988 21198 22300 21973 21382 25910 25322 25902 31138 20684 23590 21400 23046 22308 21581 26185 26185 25558 29906 1 1 1 1 1 1 1 1 1 1 5609 1335 4941 5266 6234 6234 2410;4639 TSPSGGTWSSVVSGVPR 17 Phospho (STY) _T(ph)SPSGGTWSSVVSGVPR_ T(0.489)S(0.489)PS(0.021)GGTWSSVVSGVPR T(0)S(0)PS(-13.63)GGT(-41.13)WS(-81.77)S(-98.44)VVS(-127.12)GVPR 0 0 1 0 Q99700 Q99700 Q99700 ATXN2 Ataxin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.325256347656 3 580.936603 1739.78798 38633.3258615495 1.9147 0.0011123 131490 76.388 131490 76.389 657.324408046156 77.824 0.60368 77.824 77.515 78.119 0 68 20 5 0.957768437115575 0.0034816883803303 0.0553667882337287 5.086E-07 1 18213 147.49 119.21 7 52681000 3656.1 4033.3 4763.3 4100.5 3795 3592.5 4306.3 4658 5402.9 6147.4 3463.8 3810.5 4721.9 4198 3916.6 3648.5 4389 4816.3 5284.6 5896.3 1 1 1 1 1 1 1 1 1 1 5610 1784 4942 5267 6235 6235 3291;4748 TSPSGGTWSSVVSGVPRLSPK 21 Phospho (STY) _TSPSGGTWSSVVSGVPRLS(ph)PK_ TSPSGGTWSSVVSGVPRLS(1)PK T(-174.15)S(-170.49)PS(-160.7)GGT(-139.52)WS(-113.87)S(-102.85)VVS(-68.1)GVPRLS(68.1)PK 0 0 1 1 Q99700 Q99700 Q99700 ATXN2 Ataxin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.803283691406 3 722.691209 2165.0518 34768.3154290288 1.8463 0.0013343 211400 152.78 211400 152.78 875.801515553938 83.754 0.51764 83.754 83.526 84.044 0 63 17 5 0.984050668941904 0.00511443305336779 0.0539456922796993 7.3852E-12 1 19572 203.79 175.61 8 19634000 6042.9 17005 6995.8 13834 13591 8794.8 17417 14146 17566 20293 5721.7 16046 7077.5 14317 13457 9145.6 17549 14593 17326 19435 1 1 1 1 1 1 1 1 1 1 5611 1784 4943 5268 6236 6236 3291;3292;4748 TSPSGGTWSSVVSGVPRLSPK 21 2 Phospho (STY) _TS(ph)PSGGTWSSVVSGVPRLS(ph)PK_ T(0.454)S(0.545)PS(0.002)GGTWSSVVS(0.019)GVPRLS(0.98)PK T(-0.8)S(0.8)PS(-25.49)GGT(-42.8)WS(-41.62)S(-34.41)VVS(-17.1)GVPRLS(17.1)PK 0 0 2 1 Q99700 Q99700 Q99700 ATXN2 Ataxin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.124816894531 3 749.346653 2245.01813 32167.3165256227 2.2602 0.0016937 203880 152.78 203880 152.78 902.456891054267 90.191 0.5764 90.191 89.898 90.475 0 59 19 4 0.978354391951146 0.00226312802821471 0.072268832934198 6.9911E-05 1 21010 105.51 84.141 28 16381000 3874.5 9676.2 5233.8 9750.4 5361.4 5398.6 5486.4 7024 9763.7 24251 3671.4 9141.2 5193.8 9937 5439.1 5671.6 5695.8 7713.3 9452.5 22998 1 1 1 1 1 1 1 1 1 1 5612 1784 4943 5269 6237 6237 3291;3292;4748 TSPSKSPFLHSGMK 14 Oxidation (M),Phospho (STY) _T(ph)SPSKSPFLHSGM(ox)K_ TSPSKSPFLHSGM(1)K T(0.499)S(0.499)PS(0.002)KSPFLHSGMK TSPSKSPFLHSGM(89.57)K T(0)S(0)PS(-23.36)KS(-31.26)PFLHS(-52.93)GMK 0 1 1 1 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.811279296875 4 400.686375 1598.71639 40748.0156371577 2.4381 0.0009769 428950 171.87 428950 171.87 572.559830376867 53.68 0.67317 53.68 53.475 54.148 -7.1054E-15 53 22 4 0.896139642064587 0.0017789371429467 0.0233033387577732 0.0059256 1 12524 89.566 69.698 5 13650000 9933.2 10528 11254 9960.4 8138.5 14935 15842 16020 11443 3719.4 9404.3 9942.7 11232 10342 8547.6 14769 15636 16139 11478 3873 1 1 1 1 1 1 1 1 1 1 5613 57 4944 5270 6238 6238 7 90;91;4318 TSPSKSPFLHSGMK 14 Oxidation (M),2 Phospho (STY) _TS(ph)PS(ph)KSPFLHSGM(ox)K_ TSPSKSPFLHSGM(1)K T(0.475)S(0.525)PS(0.598)KS(0.399)PFLHS(0.003)GMK TSPSKSPFLHSGM(46.16)K T(-0.45)S(0.45)PS(1.78)KS(-1.78)PFLHS(-23.52)GMK 0 1 2 1 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.066284179688 3 560.568184 1678.68272 36298.058365533 2.0002 0.0011213 408800 229.16 408810 229.16 790.065563667198 57.674 0.37034 57.674 57.449 57.82 7.1054E-15 22 12 2 0.737512738334446 0.00116895524390045 0.0317169343920815 0.031929 1 13507 46.159 17.346 10 9167900 10524 14976 10162 15793 9566.1 11686 7477 13636 16983 16357 9957 14152 10242 16100 9722.3 11952 7971.6 14096 16354 15717 1 1 1 1 1 1 1 1 1 1 5614 57 4944 5271 6239 6239 7 90;91;4318 TSPSKSPFLHSGMK 14 Phospho (STY) _T(ph)SPSKSPFLHSGMK_ T(0.497)S(0.497)PS(0.004)KS(0.002)PFLHSGMK T(0)S(0)PS(-20.75)KS(-24.15)PFLHS(-66.32)GMK 0 0 1 1 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 568.559936523438 4 396.687646 1582.72148 42346.9142417003 1.9784 0.00078479 433270 171.87 433270 171.87 568.559580041142 60.951 0.67577 60.951 60.656 61.331 0 88 22 6 0.94197808750884 0.00412371795493733 0.0921757318960327 6.4091E-07 1 14280 146.64 118.34 5 32679000 7419.1 10397 8092.8 9573.5 5882 11346 16905 14817 10119 2801.4 7022.9 9817.1 8104 9908.5 6249.1 11342 16492 14812 10272 2980.7 1 1 1 1 1 1 1 1 1 1 5615 57 4944 5272 6240 6240 90;91;4318 TSPTGPK 7 Phospho (STY) _T(ph)SPTGPK_ T(0.942)S(0.058)PTGPK T(12.08)S(-12.08)PT(-45.14)GPK 0 0 1 0 Q9UPY8 Q9UPY8 Q9UPY8 MAPRE3 Microtubule-associated protein RP/EB family member 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.334716796875 2 384.170394 766.326235 39866.8545269071 1.8295 0.00070283 596510 229.16 596510 229.16 613.333077666362 33.559 0.73312 33.559 33.112 33.845 0 50 25 4 0.914647234235202 0.00198996446247482 0.0107549115490746 0.0010708 1 7495 125.82 24.387 3 44022000 16017 56640 18830 49455 14278 16468 11227 28328 58052 4448.2 15167 53465 18738 50687 14759 18136 12857 28089 55294 4844.1 1 1 1 1 1 1 1 1 1 1 5616 2224 4945 5273 6241 6241 4816 TSPTPPESATTVK 13 Phospho (STY) _T(ph)SPTPPESATTVK_ T(0.49)S(0.49)PT(0.021)PPESATTVK T(0)S(0)PT(-13.72)PPES(-72.77)AT(-83.08)T(-101.35)VK 0 0 1 0 Q5M775 Q5M775 Q5M775 SPECC1 Cytospin-B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 618.6552734375 3 465.884957 1394.63304 39121.9123368039 0.47643 0.00022196 327920 152.77 327920 152.77 618.658127157762 47.469 0.31962 47.469 47.395 47.715 7.1054E-15 21 11 2 0.878643493283069 0.000595346585703593 0.00315097873740906 0.00018137 2 10995 113.52 83.539 6 21349000 30042 25622 30001 25259 24187 30580 25650 26820 28450 9520.5 28428 24202 30143 26043 24912 30385 26116 27335 27953 9585.4 2 2 2 2 2 2 2 2 2 2 5617 1173 4946 5274 6242;6243 6243 2033;4598 TSPTVATQTGASATSTR 17 Phospho (STY) _T(ph)SPTVATQTGASATSTR_ T(0.683)S(0.316)PT(0.001)VATQTGASATSTR T(3.35)S(-3.35)PT(-26.86)VAT(-42.34)QT(-53.55)GAS(-63.92)AT(-74.43)S(-75.19)T(-73.97)R 0 0 1 0 Q6P1L5 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 973.979431152344 2 858.893638 1715.77272 31805.4459577968 1.7185 0.001476 133410 114.58 133410 114.58 973.977290622323 36.233 0.31559 36.233 36.056 36.372 0 17 10 3 0.938739545737113 0.000354308783504796 0.00914783764365692 0.0016613 1 8164 99.442 73.399 9 10064000 4137.5 3386 3214.4 4273.4 7688.2 3293.9 7526 5093.2 5242.5 7826.8 3911.6 3203.7 3344.2 4317.9 7533.4 3382.7 7606 5275 5269.7 7487.7 1 1 1 1 1 1 1 1 1 1 5618 1255 4947 5275 6244 6244 4622 TSQETADVK 9 Phospho (STY) _T(ph)SQETADVK_ T(0.991)S(0.009)QETADVK T(20.45)S(-20.45)QET(-48.66)ADVK 0 0 1 0 Q8N1F7 Q8N1F7 Q8N1F7 NUP93 Nuclear pore complex protein Nup93 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.887512207031 2 529.723719 1057.43288 35651.6903545805 1.7095 0.00090558 432610 229.16 432610 229.16 758.88752771712 40.227 0.4145 40.227 40.034 40.449 -7.1054E-15 30 13 3 0.798970389625238 0.000731131836357264 0.0139887384903724 8.3314E-05 1 9140 135.5 95.88 3 35787000 38239 33630 36727 31008 41862 37305 38165 35897 35516 5794.1 36178 31754 37125 32100 42123 37105 38954 36236 35156 6286.6 1 1 1 1 1 1 1 1 1 1 5619 1453 4948 5276 6245 6245 4671 TSQTQPTATSPLTSYR 16 Phospho (STY) _TSQTQPTATS(ph)PLTSYR_ TSQTQPTAT(0.024)S(0.963)PLT(0.009)S(0.003)YR T(-101.12)S(-101.12)QT(-88.89)QPT(-61.91)AT(-15.96)S(15.96)PLT(-20.3)S(-24.63)Y(-61.05)R 0 0 1 0 Q86YV0 Q86YV0 Q86YV0 RASAL3 RAS protein activator like-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 683.332702636719 3 606.947167 1817.81967 37469.365004423 1.1782 0.00071508 125860 76.387 125860 76.388 683.334064530642 52.218 0.56936 52.218 51.921 52.491 0 54 19 4 0.984076689418648 0.000982241472590243 0.0068698434737871 5.0144E-05 1 12134 124.6 100.4 9 34785000 13561 11213 12054 9767.6 12171 14085 11820 11919 10348 6529.1 12827 10584 12225 10187 12338 13910 12008 12236 10273 6423.8 1 1 1 1 1 1 1 1 1 1 5620 1404 4949 5277 6246 6246 2555 TSQVGAASAPAKESPR 16 Phospho (STY) _TSQVGAASAPAKES(ph)PR_ TSQVGAASAPAKES(1)PR T(-119.49)S(-119.49)QVGAAS(-51.46)APAKES(51.46)PR 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.371704101563 3 546.261198 1635.76176 37196.0969942049 1.0053 0.00054915 279670 152.78 279680 152.78 699.037157479974 35.79 1.0378 35.79 35.475 36.513 0 140 35 7 0.993786088642515 0.00692119059846003 0.0708120478812303 1.515E-10 1 8011 176.9 157.9 4 1127000000 21845 33393 22598 35544 16911 21058 18006 24823 35340 4433.6 20674 31557 22644 36131 17529 21810 18751 24887 34135 4749.3 1 1 1 1 1 1 1 1 1 1 5621 953 4950 5278 6247 6247 1593 TSRDTSPSSGSAVSSSK 17 2 Phospho (STY) _TS(ph)RDT(ph)SPSSGSAVSSSK_ T(0.448)S(0.555)RDT(0.811)S(0.185)PS(0.001)SGSAVSSSK T(-0.95)S(0.95)RDT(6.45)S(-6.45)PS(-31.13)S(-46.2)GS(-60.22)AVS(-90.2)S(-94.29)S(-98.23)K 0 0 2 1 Q8NEY8 Q8NEY8 Q8NEY8 PPHLN1 Periphilin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.682312011719 3 600.90647 1799.69758 34785.0068551578 1.5765 0.0009473 254240 152.78 254240 152.78 753.683258156281 33.298 0.73653 33.298 32.939 33.676 0 47 25 2 0.977717991860363 0.00101123344721623 0.00474929904582844 4.2917E-05 2 7435 132.72 112.62 45 33874000 24566 20100 27972 22139 24119 25704 25773 25776 21251 7496.6 23259 19000 27926 22665 24723 25621 26032 26078 21160 7655.5 2 2 2 2 2 2 2 2 2 2 5622 1518 4951 5279 6248;6249 6248 2785;2786;4688;4689 TSSAVWNSPPLQGAR 15 Phospho (STY) _T(ph)SSAVWNSPPLQGAR_ T(0.363)S(0.363)S(0.274)AVWNSPPLQGAR T(0)S(0)S(-1.22)AVWNS(-80.29)PPLQGAR 0 0 1 0 Q9NQS7 Q9NQS7 Q9NQS7 INCENP Inner centromere protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 627.314758300781 3 550.926038 1649.75628 39661.1042954863 1.261 0.00069471 138650 76.388 138660 76.389 627.314445652379 70.443 0.89551 70.443 69.96 70.855 0 74 30 3 0.869603185486629 0.000737958418676481 0.00233465037044601 0.00012586 1 16538 120.9 87.215 4 14680000 4301.7 4359.3 4121.8 4880.9 4274.3 5868.7 4453 4557.5 4622 5684 4069.8 4121 4162.9 4995.6 4331.3 5832.7 4528.8 4793.6 4553.3 5457.7 1 1 1 1 1 1 1 1 1 1 5623 2008 4952 5280 6250 6250 3645;4776 TSSEASMDAAYLDK 14 Phospho (STY) _T(ph)SSEASMDAAYLDK_ T(0.37)S(0.37)S(0.259)EASMDAAYLDK T(0)S(0)S(-1.55)EAS(-38.35)MDAAY(-125.28)LDK 0 0 1 0 Q5W0B1 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 676.656311035156 3 523.544383 1567.61132 38800.0375810528 1.9006 0.00099507 291810 152.78 291810 152.78 676.654299949039 71 0.37373 71 70.855 71.229 0 31 12 3 0.756722507436421 0.00283915250557941 0.0120076319286759 1.1979E-06 1 16658 143.88 129.19 5 15918000 16029 19175 16941 22378 17904 15739 19533 20029 23112 8289.4 15171 18133 17021 22675 18138 16142 19903 20174 22653 8269 1 1 1 1 1 1 1 1 1 1 5624 1217 4953 5281 6251 6251 2144;4612 TSSEEEDSRREEPSLLLVLK 20 Phospho (STY) _T(ph)SSEEEDSRREEPSLLLVLK_ T(0.456)S(0.456)S(0.087)EEEDSRREEPSLLLVLK T(0)S(0)S(-7.18)EEEDS(-54.12)RREEPS(-63.46)LLLVLK 0 0 1 2 O43314 O43314 O43314 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.626586914063 4 600.04408 2396.14721 37897.4769037294 2.1639 0.0012984 190960 114.58 190960 114.58 714.876311087874 90.24 0.97694 90.24 89.841 90.818 1.4211E-14 100 33 4 0.587604087197962 0.00249697581441591 0.0964997588814149 2.4096E-05 1 21006 128.52 97.568 5 11120000 6575.9 5338.6 7198.3 4801.9 4314 7409.6 5451.8 4914.2 4572.8 9393 6224.8 5040.1 7179.3 5005 4563.4 7297 5470.7 5309 4549.3 8958.3 1 1 1 1 1 1 1 1 1 1 5625 105 4954 5282 6252 6252 175;4328 TSSEPEFNSLPR 12 Phospho (STY) _TSS(ph)EPEFNSLPR_ T(0.007)S(0.003)S(0.99)EPEFNSLPR T(-21.62)S(-24.68)S(21.62)EPEFNS(-69.1)LPR 0 0 1 0 Q96QH2 Q96QH2 Q96QH2 PRAM1 PML-RARA-regulated adapter molecule 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 836.894714355469 2 722.311221 1442.60789 33809.8465312551 2.0403 0.0014737 158630 114.58 158630 114.58 836.893100431323 63.421 0.84771 63.421 62.902 63.75 -7.1054E-15 62 23 3 0.91824475995318 0.00180796161424923 0.0365980533136081 3.6362E-16 1 14868 234.54 195.68 4 22790000 21117 8817.7 21848 9598.3 14580 21754 14744 15672 8552.4 31536 19985 8334.2 21869 10003 15221 21246 14831 16906 8701.3 30057 1 1 1 1 1 1 1 1 1 1 5626 1733 4955 5283 6253 6253 3181 TSSEPEVSVLPK 12 Phospho (STY) _T(ph)SSEPEVSVLPK_ T(0.333)S(0.333)S(0.333)EPEVSVLPK T(0)S(0)S(0)EPEVS(-89.21)VLPK 0 0 1 0 Q96QH2 Q96QH2 Q96QH2 PRAM1 PML-RARA-regulated adapter molecule 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 604.660278320313 3 451.549686 1351.62723 41074.549325346 1.9473 0.0008793 338340 152.78 338340 152.78 604.324976156034 71.96 0.58986 71.96 71.721 72.311 1.4211E-14 46 19 3 0.917762371929307 0.00210096103524029 0.0260430137612729 6.2269E-07 1 16927 139.3 116.06 4 12325000 9566.5 4201.1 9349.5 4639.2 6401.7 9574.4 7064.8 6235.5 3886.8 6442.8 9051.5 3971.1 9392 4815.9 6676.9 9346.9 7072.5 6578.2 3969.9 6211 1 1 1 1 1 1 1 1 1 1 5627 1733 4956 5284 6254 6254 3182;3183;4737 TSSFAEPGGGGGGGGGGPGGSASGPGGTGGGK 32 Phospho (STY) _TSS(ph)FAEPGGGGGGGGGGPGGSASGPGGTGGGK_ T(0.185)S(0.185)S(0.629)FAEPGGGGGGGGGGPGGSASGPGGTGGGK T(-5.31)S(-5.31)S(5.31)FAEPGGGGGGGGGGPGGS(-161.32)AS(-172.68)GPGGT(-197.39)GGGK 0 0 1 0 P49840 P49840 P49840 GSK3A Glycogen synthase kinase-3 alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 991.461120605469 3 838.34901 2512.0252 31281.2684207502 1.9973 0.0016744 182230 152.78 182240 152.78 991.458009708337 49.132 0.39728 49.132 48.913 49.31 -7.1054E-15 47 13 5 0.916697604346291 0.00259893194573746 0.0479176446121974 4.4409E-18 1 11401 230.39 206.48 6 16519000 8177.7 10635 8977.9 10176 10271 8817.6 11025 10066 10959 9701.8 7741.2 10044 9011.5 10454 10357 8932.9 11184 10341 10816 9368.4 1 1 1 1 1 1 1 1 1 1 5628 658 4957 5285 6255 6255 1111 TSSFTEQLDEGTPNR 15 Phospho (STY) _TSS(ph)FTEQLDEGTPNR_ TS(0.002)S(0.861)FT(0.137)EQLDEGTPNR T(-37.22)S(-27.46)S(7.97)FT(-7.97)EQLDEGT(-179.55)PNR 0 0 1 0 Q13439 Q13439 Q13439 GOLGA4 Golgin subfamily A member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 995.952514648438 2 881.369995 1760.72544 31354.5365811795 1.6993 0.0014977 130000 114.58 130010 114.58 995.951069735264 60.875 0.46665 60.875 60.628 61.095 -7.1054E-15 49 15 4 0.840765781891837 0.00147015280095196 0.0362324083879309 1.1387E-53 1 14260 363.3 302.26 5 21588000 9977.5 17537 9972.4 17519 12247 9214.9 11685 15174 19375 13375 9441.2 16566 10069 17855 12294 9707.1 12132 15392 18791 12946 1 1 1 1 1 1 1 1 1 1 5629 955 4958 5286 6256 6256 1604 TSSKSEAGAR 10 Phospho (STY) _TSS(ph)KSEAGAR_ T(0.096)S(0.096)S(0.793)KS(0.016)EAGAR T(-9.19)S(-9.19)S(9.19)KS(-17)EAGAR 0 0 1 1 Q7L2J0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.399108886719 2 537.234785 1072.45502 35705.2435467089 2.2547 0.0012113 426560 229.16 426560 229.16 766.398102145388 24.671 0.32144 24.671 24.54 24.861 3.5527E-15 25 10 3 0.67833525850258 0.0010384815835394 0.0212755711297356 0.05044 1 5520 47.47 31.58 4 6111400 8522 4550 6355.7 3751.3 4464.8 7960.9 4179.4 5595.4 5328 1207.2 8055.9 4293.7 6500.7 3968.1 4639.6 7764.3 4299.4 5740.6 5208.4 1266.2 1 1 1 1 1 1 1 1 1 1 5630 1317 4959 5287 6257 6257 2359 TSSLDGAAVAVLSR 14 Phospho (STY) _T(ph)SSLDGAAVAVLSR_ T(0.341)S(0.341)S(0.319)LDGAAVAVLSR T(0)S(0)S(-0.29)LDGAAVAVLS(-121.86)R 0 0 1 0 Q7Z5H3 Q7Z5H3 Q7Z5H3 ARHGAP22 Rho GTPase-activating protein 22 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.623229980469 3 476.236101 1425.68647 42636.79241676 1.2553 0.0005978 160400 76.388 160400 76.388 552.62370026448 83.309 0.49792 83.309 83.028 83.526 0 47 16 4 0.984178264113518 0.00220228872767902 0.0260269302961014 9.9367E-05 1 19465 126.25 97.52 4 8550100 1864.3 2378.4 1703.1 1991 5290 1969.5 4400.6 2459.4 2117.2 2685.8 1763.5 2244.6 1766.4 2067.6 5141.8 1986.3 4459.6 2528.9 2185.9 2585.9 1 1 1 1 1 1 1 1 1 1 5631 1347 4960 5288 6258 6258 2430;4641 TSSLDTITGPYLTGQWPR 18 Phospho (STY) _T(ph)SSLDTITGPYLTGQWPR_ T(0.362)S(0.362)S(0.276)LDTITGPYLTGQWPR T(0)S(0)S(-1.17)LDT(-40.79)IT(-85.52)GPY(-123.74)LT(-140.9)GQWPR 0 0 1 0 Q86VQ1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.381469726563 3 691.661138 2071.96159 35172.2730105961 1.601 0.0011074 110440 76.387 110440 76.388 768.382808575087 99.074 0.45883 99.074 98.749 99.207 0 32 15 3 0.887901375572404 0.00327476530713517 0.111354505195395 2.0805E-07 1 22979 156.67 133.21 7 15046000 8705.8 8631.7 10357 8155.8 7974.7 9083 7522.4 8699.4 8846.5 30688 8244.1 8151.3 10304 8418.1 8228.3 9115.9 7715.1 9665.7 8672.6 29098 1 1 1 1 1 1 1 1 1 1 5632 1382 4961 5289 6259 6259 2504;2505;4647 TSSLDTLAAPYLAGHWPR 18 Phospho (STY) _T(ph)SSLDTLAAPYLAGHWPR_ T(0.303)S(0.303)S(0.303)LDT(0.09)LAAPYLAGHWPR T(0)S(0)S(0)LDT(-5.27)LAAPY(-60.91)LAGHWPR 0 0 1 0 Q6P1L5 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 756.049438476563 3 679.32609 2034.95644 37274.1589449144 1.6244 0.0011035 112450 76.387 112450 76.388 756.047584002542 97.722 0.60542 97.722 97.357 97.963 0 43 20 3 0.87155101168304 0.00134413724471481 0.012932570532443 0.020566 1 22708 65.887 47.292 5 7989200 2407.1 2742.4 2345.6 1783.1 2046.3 2391.1 2680.5 2387.7 2056.5 11645 2277.5 2585.2 2362.9 1899.2 2102.7 2391.5 2681 2746.1 2055.6 11021 1 1 1 1 1 1 1 1 1 1 5633 1255 4962 5290 6260 6260 2224;2225;4623 TSSLPPLDWPLPAHFGQCELK 21 Phospho (STY) _T(ph)SSLPPLDWPLPAHFGQCELK_ T(0.353)S(0.353)S(0.294)LPPLDWPLPAHFGQCELK T(0)S(0)S(-0.79)LPPLDWPLPAHFGQCELK 0 0 1 0 Q12968 Q12968 Q12968 NFATC3 Nuclear factor of activated T-cells, cytoplasmic 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 978.169372558594 3 825.058904 2472.15488 33368.1423780504 1.993 0.0016444 185170 152.77 185170 152.78 978.166622319819 100.34 0.16565 100.34 100.26 100.42 0 16 5 4 0.817872160359883 0.00146798822666928 0.0445790574187923 9.5747E-08 1 23452 157.07 129.91 3 24775000 11250 16733 11880 19287 9588.7 13041 10806 15021 16541 55305 10648 15822 11901 19547 9888.5 13479 11098 16657 16078 52424 1 1 1 1 1 1 1 1 1 1 5634 915 4963 5291 6261 6261 1511;4523 TSSLTQFPPSQSEER 15 Phospho (STY) _T(ph)SSLTQFPPSQSEER_ T(0.344)S(0.344)S(0.29)LT(0.022)QFPPSQSEER T(0)S(0)S(-0.74)LT(-11.86)QFPPS(-54.12)QS(-53.76)EER 0 0 1 0 Q9H6Z4 Q9H6Z4 Q9H6Z4 RANBP3 Ran-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.650939941406 3 591.927884 1772.76182 38692.1449795097 1.6462 0.00097443 129050 76.387 129050 76.388 668.649368449578 57.809 0.8911 57.809 57.044 57.935 -7.1054E-15 63 30 3 0.946619746202567 0.00125026386025138 0.0137566496240327 0.032225 1 13533 59.585 41.785 6 10355000 6989.7 7575.8 7695 7420.2 7523.4 8387.2 7095.5 7796.9 7936.2 5137.7 6616.7 7155.7 7705 7643.9 7639.6 8366 7266.2 7998.6 7795 5018.2 1 1 1 1 1 1 1 1 1 1 5635 1948 4964 5292 6262 6262 3539;3540;4765 TSSLTQFPPSQSEER 15 Phospho (STY) _T(ph)SSLTQFPPSQSEER_ T(0.354)S(0.354)S(0.271)LT(0.021)QFPPSQSEER T(0)S(0)S(-1.17)LT(-12.32)QFPPS(-87.36)QS(-87.6)EER 0 0 1 0 Q9H6Z4 Q9H6Z4 Q9H6Z4 RANBP3 Ran-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.317565917969 3 591.927884 1772.76182 38877.79504445 1.6963 0.0010041 129050 76.387 129050 76.388 668.314986227717 60.356 4.0852 60.356 58.291 62.376 -7.1054E-15 229 140 2 0.956232056500199 0.00122057657132773 0.0223471501911435 0.0054478 3 14366 92.236 67.3 6 13888000 26318 22413 24293 24680 26200 24646 25293 23549 22025 16343 24896 21186 24600 25202 26460 24722 25700 24157 21871 15934 3 3 3 3 3 3 3 3 3 3 5636 1948 4964 5292 6263;6264;6265 6265 3539;3540;4765 TSSLTQFPPSQSEER 15 Phospho (STY) _TSS(ph)LTQFPPSQSEER_ T(0.002)S(0.003)S(0.979)LT(0.016)QFPPSQSEER T(-28.06)S(-25.21)S(17.86)LT(-17.86)QFPPS(-127.17)QS(-151.08)EER 0 0 1 0 Q9H6Z4 Q9H6Z4 Q9H6Z4 RANBP3 Ran-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1001.970703125 2 887.388188 1772.76182 31220.4870671315 1.5583 0.0013828 129120 114.58 129120 114.58 1002.4705066956 59.419 4.788 59.419 57.305 62.093 0 259 164 2 0.700644744002911 0.000765628298354156 0.058780385170116 6.3497E-23 1 14167 276.47 226.26 6 14613000 7383.9 5024.7 8781.8 5650.9 6878 8394 7033.6 7173.2 5451 9699.9 6992.3 4750.2 8739.4 5808 7092.9 8294.3 7108.8 7534.8 5445.6 9299.6 1 1 1 1 1 1 1 1 1 1 5637 1948 4964 5292 6266 6266 3539;3540;4765 TSSLTQFPPSQSEER 15 Phospho (STY) _TSS(ph)LTQFPPSQSEER_ TSS(0.989)LT(0.01)QFPPSQSEER T(-33.73)S(-33.73)S(19.95)LT(-19.95)QFPPS(-120.44)QS(-132.27)EER 0 0 1 0 Q9H6Z4 Q9H6Z4 Q9H6Z4 RANBP3 Ran-binding protein 3 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1001.9697265625 2 887.388188 1772.76182 NaN NaN NaN NaN NaN NaN NaN NaN 62.24 1 62.24 61.74 62.74 0 NaN NaN NaN 1.7964E-19 1 14617 244.36 200.06 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5638 1948 4964 5292 6267 6267 3539;3540;4765 TSSPHKEESPK 11 2 Phospho (STY) _TS(ph)SPHKEES(ph)PK_ T(0.3)S(0.35)S(0.35)PHKEES(0.999)PK T(-0.66)S(0)S(0)PHKEES(32.66)PK 0 0 2 1 P51003 P51003 P51003 PAPOLA Poly(A) polymerase alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.012634277344 3 462.849457 1385.52654 38375.2759672525 2.4504 0.0011342 495110 229.16 495110 229.16 692.345068746402 30.719 0.33032 30.719 30.581 30.911 3.5527E-15 25 10 3 0.819769893820077 0.00105521456097318 0.0295056732235383 0.032775 1 6859 51.495 36.947 6 7761600 14112 11629 13604 11419 10282 16090 11501 13763 12274 3047.3 13351 10984 13690 11812 10649 15896 11669 13987 12078 3188 1 1 1 1 1 1 1 1 1 1 5639 674 4965 5293 6268 6268 1129;1130;1131;4477 TSSPHKEESPK 11 Phospho (STY) _TSS(ph)PHKEESPK_ T(0.004)S(0.018)S(0.979)PHKEESPK T(-24.35)S(-17.42)S(17.42)PHKEES(-46.05)PK 0 0 1 1 P51003 P51003 P51003 PAPOLA Poly(A) polymerase alpha MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.359985351563 3 436.194013 1305.56021 NaN NaN NaN NaN NaN NaN NaN NaN 29.61 1 29.61 29.11 30.11 0 NaN NaN NaN 0.00047169 1 6601 110.84 87.726 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5640 674 4965 5294 6269 6269 1129;1130;1131;4477 TSSPHKEESPKK 12 2 Phospho (STY) _T(ph)SSPHKEES(ph)PKK_ T(0.442)S(0.176)S(0.382)PHKEES(1)PKK T(0.63)S(-3.99)S(-0.63)PHKEES(51.84)PKK 0 0 2 2 P51003 P51003 P51003 PAPOLA Poly(A) polymerase alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 811.100769042969 3 505.547778 1513.6215 34791.032348955 2.347 0.0011865 604400 305.55 604400 305.55 811.43280873141 32.093 0.61872 32.093 31.852 32.471 0 55 20 4 0.957622136707997 0.00206548133117816 0.0744685173450266 0.00027971 1 7161 107.65 81.219 6 13781000 18193 15309 19644 15589 12986 23869 19606 20392 16588 2096.9 17220 14463 19628 16122 13662 23516 19557 20652 16496 2446.4 1 1 1 1 1 1 1 1 1 1 5641 674 4966 5295 6270 6270 1129;1130;1131;4477 TSSPPRK 7 Phospho (STY) _TSS(ph)PPRK_ T(0.032)S(0.032)S(0.936)PPRK T(-14.65)S(-14.65)S(14.65)PPRK 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 437.579376220703 3 284.804021 851.390232 46303.5750161303 1.2257 0.00034907 536420 152.78 536420 152.78 437.579358689727 28.298 1.3428 28.298 27.38 28.723 0 140 46 6 0.911320040475116 0.0029946796234121 0.0316296017686136 0.013143 1 6190 72.879 15.157 3 223350000 20329 20560 19252 20765 23958 21263 22569 21947 22858 3270 19232 19423 19502 21316 24015 21306 23048 22086 22542 3587.1 1 1 1 1 1 1 1 1 1 1 5642 1436 4967 5296 6271 6271 2664 TSSPRSPPSSSEIFTPAHEENVR 23 Phospho (STY) _TSSPRS(ph)PPSSSEIFTPAHEENVR_ T(0.002)S(0.007)S(0.04)PRS(0.936)PPS(0.011)S(0.004)S(0.001)EIFTPAHEENVR T(-27.81)S(-21.58)S(-13.67)PRS(13.67)PPS(-19.19)S(-23.88)S(-30.15)EIFT(-67.65)PAHEENVR 0 0 1 1 C9JLW8 C9JLW8 C9JLW8 FAM195B Protein FAM195B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 941.451904296875 3 864.729051 2591.16532 33410.5097822209 1.6013 0.0013847 88336 76.387 88338 76.388 941.449140536217 52.454 0.68269 52.454 52.072 52.755 0 84 23 5 0.970116017717745 0.00161730525059363 0.0305449335894925 4.5854E-08 1 12192 153.39 129.67 8 12681000 6345.4 8408.1 7916.9 9385.6 7665.1 8398 9770.7 10293 10240 5607.1 6010.3 7948.4 7882.4 9561.3 7823.6 8496.1 9857.5 10420 10084 5518 1 1 1 1 1 1 1 1 1 1 5643 19 4968 5297 6272 6272 36 TSSSPAGLEGSDLSSINTMMSAVMSVGK 28 Acetyl (Protein N-term),Phospho (STY) _(ac)T(ph)SSSPAGLEGSDLSSINTMMSAVMSVGK_ T(0.144)S(0.144)S(0.144)S(0.144)PAGLEGS(0.133)DLS(0.133)S(0.133)INT(0.023)MMS(0.001)AVMSVGK T(0)S(0)S(0)S(0)PAGLEGS(-0.35)DLS(-0.35)S(-0.35)INT(-8.05)MMS(-23.07)AVMS(-40.3)VGK 1 0 1 0 Q92766 Q92766 Q92766 RREB1 Ras-responsive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1032.8134765625 3 956.090052 2865.24833 31312.0095689922 1.6048 0.0015343 79896 76.387 79897 76.389 1032.81184557976 104.31 0.20047 104.31 104.23 104.43 -1.4211E-14 16 6 4 0.830470702107467 0.0014233234534963 0.0379004801460296 0.026444 1 24573 45.957 35.153 10 3521700 2269.7 2414.8 1885.1 2166 2610.2 2308 2487.2 3049.8 3145.3 48217 2146.3 2279.7 1928.9 2241.5 2604.9 2407.2 2555.7 4483.3 3075.6 45472 1 1 1 1 1 1 1 1 1 1 5644 1618 4969 5298 6273 6273 2989;2990;2991;4716 TSSTLDSEGTFNSYR 15 Phospho (STY) _T(ph)SSTLDSEGTFNSYR_ T(0.611)S(0.322)S(0.057)T(0.01)LDSEGTFNSYR T(2.78)S(-2.78)S(-10.29)T(-17.75)LDS(-47.03)EGT(-73.6)FNS(-107.81)Y(-141.59)R 0 0 1 0 Q92609 Q92609 Q92609 TBC1D5 TBC1 domain family member 5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 987.940368652344 2 872.856721 1743.69889 31645.0799559827 1.3257 0.0011572 131270 114.58 131270 114.58 987.439440320703 61.637 0.41305 61.637 61.42 61.833 0 34 13 3 0.964591238790874 0.000660789976369136 0.0171110381492488 1.8647E-15 1 14450 219.12 192.58 8 17367000 9370.3 6694.7 10919 6554.4 14860 10503 16660 12207 8404.7 12953 8872.5 6323.4 10958 6801.8 14865 10397 16646 12569 8643.1 12479 1 1 1 1 1 1 1 1 1 1 5645 1606 4970 5299 6274 6274 2956;4712 TSSVSSISQVSPER 14 Phospho (STY) _TSSVSSISQVS(ph)PER_ TSSVSSIS(0.001)QVS(0.999)PER T(-69.62)S(-69.62)S(-69.62)VS(-59.41)S(-49.65)IS(-32.04)QVS(32.04)PER 0 0 1 0 P42356 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.623962402344 3 515.23817 1542.69268 40671.5226980483 1.2314 0.00063445 148260 76.387 148260 76.388 591.625117209617 47.027 0.40787 47.027 46.714 47.122 0 22 13 2 0.260932312166632 0.000607510629152252 0.00688656324725635 0.0079266 1 10888 79.62 64.589 7 11214000 16981 15745 17782 15633 13157 16845 11378 14808 15967 3732.9 16072 14873 17800 16078 13604 16812 11793 15045 15560 3857.7 1 1 1 1 1 1 1 1 1 1 5646 586 4971 5300 6275 6275 947;948 TSSVSSISQVSPER 14 Phospho (STY) _TSS(ph)VSSISQVSPER_ T(0.018)S(0.018)S(0.955)VS(0.008)SISQVSPER T(-17.15)S(-17.15)S(17.15)VS(-20.59)S(-40.31)IS(-62.49)QVS(-97.45)PER 0 0 1 0 P42356 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.436218261719 2 772.353617 1542.69268 33758.1654876774 1.2819 0.00099008 148350 114.58 148360 114.58 887.437372136914 50.645 0.34537 50.645 50.477 50.822 7.1054E-15 17 11 2 0.856794842552637 0.000345931465978175 0.0114618566374025 4.0473E-05 1 11780 134.02 102.18 7 13143000 10701 11611 11704 14558 9387.1 11727 7288.5 12128 14391 10072 10129 10985 11696 14722 9639.9 11905 7714.3 12453 13898 9764.3 1 1 1 1 1 1 1 1 1 1 5647 586 4971 5300 6276 6276 947;948 TSTSPPPEK 9 Phospho (STY) _TSTS(ph)PPPEK_ T(0.001)ST(0.263)S(0.736)PPPEK T(-30.97)S(-33.63)T(-4.48)S(4.48)PPPEK 0 0 1 0 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.38720703125 2 512.223355 1022.43216 36341.0478443232 1.9993 0.0010241 447390 229.16 447390 229.16 741.386502534236 35.414 1.6531 35.414 34.86 36.513 0 154 56 4 0.880148388744135 0.00344024612433246 0.0638738250505152 4.7504E-06 1 7912 156.14 130.7 4 112690000 66905 41741 70874 42445 53967 75462 62441 58010 49703 5424.8 63324 39435 70947 44068 55872 73957 62804 59028 49582 6450.6 1 1 1 1 1 1 1 1 1 1 5648 1913 4972 5301 6277 6277 3475 TTAAHSLVGTPYYMSPER 18 Phospho (STY) _TTAAHS(ph)LVGTPYYMSPER_ TTAAHS(1)LVGTPYYMSPER T(-37.56)T(-37.56)AAHS(37.56)LVGT(-54.28)PY(-105.81)Y(-113.36)MS(-124.14)PER 0 0 1 0 Q8TDX7 Q8TDX7 Q8TDX7 NEK7 Serine/threonine-protein kinase Nek7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 764.366271972656 3 687.64309 2059.90744 35510.1823464151 1.5886 0.0010924 111090 76.388 111090 76.389 764.364978815529 65.404 0.822 65.404 65.166 65.988 -1.4211E-14 66 27 4 0.990667403387041 0.0024972939758101 0.0466697101875657 3.9006E-08 1 15357 170.32 150.56 7 13705000 5240.7 5529.8 5126.3 6574.2 6733.2 5004.7 6965.1 6374.6 5507 10040 4958.7 5229.8 5188.6 6661.3 6739.9 5122.6 7038.8 6643.6 5495.6 9601.1 1 1 1 1 1 1 1 1 1 1 5649 1548 4973 5302 6278 6278 2841 TTAPTEGKSPLK 12 Phospho (STY) _TTAPTEGKS(ph)PLK_ TTAPT(0.02)EGKS(0.98)PLK T(-43.98)T(-35.46)APT(-17.01)EGKS(17.01)PLK 0 0 1 1 Q96T37 Q96T37 Q96T37 RBM15 Putative RNA-binding protein 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.383056640625 3 437.218159 1308.63265 39979.4424497704 1.5405 0.00067354 524140 229.16 524140 229.16 666.38226561614 48.132 0.32921 48.132 47.976 48.305 0 22 10 3 0.955946183826685 0.00102593387468569 0.00879002137148672 0.010184 1 11169 70.41 41.454 4 15071000 21536 21945 20288 21039 18201 21996 19486 22279 20840 19738 20374 20725 20478 21673 18613 22046 19810 22932 20505 19101 1 1 1 1 1 1 1 1 1 1 5650 1755 4974 5303 6279 6279 3228 TTDDLTEAWLQEK 13 Unmodified _TTDDLTEAWLQEK_ 0 0 0 0 O60234 O60234 O60234 GMFG Glia maturation factor gamma MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.026916503906 3 517.250866 1548.73077 37651.5889377973 1.2316 0.00063703 295360 152.77 295360 152.77 670.359884342903 87.778 0.63846 87.778 87.5 88.139 0 42 21 3 0.984894575618565 0.00323204526413779 0.0289856687222936 2.0873E-06 1 20481 138.42 90.281 1 17959000 12734 4835 13021 5202.9 11083 11472 12274 10522 4640.7 8218.2 12051 4569.6 13074 5420.4 11371 11223 12227 10838 4902.7 7981.9 1 1 1 1 1 1 1 1 1 1 5651 136 4975 5304 6280 6280 TTEAEKNER 9 Unmodified _TTEAEKNER_ 0 0 0 1 P26038 P26038 P26038 MSN Moesin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 512.618835449219 3 359.843882 1076.50982 45115.695756836 1.2008 0.00043211 424560 152.78 424560 152.78 512.619015024504 24.628 0.2606 24.628 24.481 24.742 0 20 8 3 0.838258389751752 0.00201980852380708 0.0311004621215781 0.028971 1 5510 57.348 27.094 1 5058300 6654 4933.4 6116.6 5358.5 8388.2 6938.5 7993.9 6766.1 4664.1 1465.9 6294.4 4662.8 6217 5501.4 8369.6 6884.9 8064.9 6837.7 4743.3 1536.9 1 1 1 1 1 1 1 1 1 1 5652 478 4976 5305 6281 6281 TTHLAGALSPGEAWPFESV 19 Phospho (STY) _TTHLAGALS(ph)PGEAWPFESV_ TTHLAGALS(1)PGEAWPFESV T(-54.97)T(-54.97)HLAGALS(54.97)PGEAWPFES(-93.35)V 0 0 1 0 Q9Y3X0 Q9Y3X0 Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1140.55688476563 2 1025.46951 2048.92447 29908.2173832246 0.79882 0.00081916 111740 114.58 111740 114.58 1140.55272317448 101.02 0.20273 101.02 100.9 101.1 0 12 6 3 0.503238663170977 0.000646357133885914 0.0183509496290172 2.8178E-07 1 23699 145.69 126.86 4 19178000 3945.4 6503.9 6782.7 6309.4 7506.6 6386.6 6121.2 10285 5295.4 90657 3744 6142.9 6672.9 6491.4 7554.6 6617.7 6274.8 12897 5260 85603 1 1 1 1 1 1 1 1 1 1 5653 2271 4977 5306 6282 6282 4205 TTKSPSDSGYSYETIGK 17 Phospho (STY) _TTKS(ph)PSDSGYSYETIGK_ T(0.007)T(0.032)KS(0.676)PS(0.285)DSGYSYETIGK T(-19.92)T(-13.3)KS(3.74)PS(-3.74)DS(-33.1)GY(-121.48)S(-64.46)Y(-132.09)ET(-104.34)IGK 0 0 1 1 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 863.445556640625 3 634.278583 1899.81392 33405.0733317706 1.6188 0.0010268 361300 229.16 361300 229.16 863.77590459098 60.516 0.48948 60.516 60.314 60.803 0 47 16 4 0.977395236858036 0.00320517131355846 0.108841291498111 3.4918E-16 1 14174 235.76 207.55 9 21970000 7593 41048 7677.3 37290 8330 6824.3 10187 18940 43573 10877 7185.3 38756 7737.3 38028 8472.5 8372.5 11194 18857 41578 10680 1 1 1 1 1 1 1 1 1 1 5654 616 4978 5307 6283 6283 1017 TTNSSLEEIMDK 12 Phospho (STY) _TTNSS(ph)LEEIMDK_ TTNS(0.081)S(0.919)LEEIMDK T(-44.7)T(-44.7)NS(-10.57)S(10.57)LEEIMDK 0 0 1 0 Q709C8 Q709C8 Q709C8 VPS13C Vacuolar protein sorting-associated protein 13C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 953.4716796875 2 724.304747 1446.59494 31215.9254511106 1.9881 0.00144 316390 229.16 316390 229.16 953.46907134352 78.188 0.48164 78.188 77.979 78.461 0 45 16 4 0.731261604369938 0.00114850165361659 0.0303907463697923 1.0881E-07 1 18324 169.98 125.53 4 13898000 17116 11967 17950 11142 13293 18701 16062 17135 11174 25111 16199 11301 17975 11612 13800 18435 16083 18005 11233 24042 1 1 1 1 1 1 1 1 1 1 5655 1306 4979 5308 6284 6284 2332 TTPATGEQSPGAR 13 Phospho (STY) _TTPATGEQS(ph)PGAR_ TTPATGEQS(1)PGAR T(-54.98)T(-56.09)PAT(-45.73)GEQS(45.73)PGAR 0 0 1 0 O00308 O00308 O00308 WWP2 NEDD4-like E3 ubiquitin-protein ligase WWP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 791.88037109375 2 676.795738 1351.57692 35379.0233673157 1.9649 0.0013298 169300 114.58 169300 114.58 791.377711562569 27.664 0.25601 27.664 27.523 27.779 -3.5527E-15 20 8 3 0.962587145912908 0.000667105874541994 0.0146728044224536 0.012218 1 6157 80.507 59.637 4 9155600 7394 5205 7279.2 5832.2 5073.3 8040.1 5746.1 6825.3 6961.5 2520.9 6996.2 4920.6 7310.6 5985.6 5289.3 7950 5850 6969.3 6817.3 2531.7 1 1 1 1 1 1 1 1 1 1 5656 43 4980 5309 6285 6285 65 TTPNSGDVQVTEDAVRR 17 Phospho (STY) _T(ph)TPNSGDVQVTEDAVRR_ T(0.681)T(0.319)PNSGDVQVTEDAVRR T(3.29)T(-3.29)PNS(-40.75)GDVQVT(-135.34)EDAVRR 0 0 1 1 P35269 P35269 P35269 GTF2F1 General transcription factor IIF subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.68603515625 3 642.296859 1923.86875 37138.5335968906 1.3986 0.00089831 118930 76.388 118930 76.389 719.354195514605 46.45 0.48662 46.45 46.228 46.714 7.1054E-15 43 16 3 0.972808841801073 0.00152458266321212 0.0127532958928082 2.2383E-10 1 10712 193.38 158.47 4 13132000 13289 11152 12995 10872 12572 14061 12762 12495 12277 7063.2 12574 10533 13097 11232 12785 13945 12969 12807 12134 6940 1 1 1 1 1 1 1 1 1 1 5657 546 4981 5310 6286 6286 4450 TTPTQPSEQK 10 Phospho (STY) _T(ph)TPTQPSEQK_ T(0.5)T(0.5)PT(0.001)QPSEQK T(0)T(0)PT(-28.17)QPS(-91.74)EQK 0 0 1 0 O95104 O95104 O95104 SCAF4 Splicing factor, arginine/serine-rich 15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 552.288696289063 3 399.511342 1195.5122 41616.5024791266 1.3965 0.00055794 382410 152.78 382410 152.78 552.28689121637 33.466 0.53617 33.466 33.309 33.845 7.1054E-15 39 18 3 0.878301113822031 0.00251128451652963 0.00794699165324392 0.00014401 1 7482 126.21 79.737 4 52409000 16678 17279 17407 19012 15959 17421 15896 16771 20026 2269.6 15784 16332 17468 19390 16283 17530 16296 16916 19585 2525.3 1 1 1 1 1 1 1 1 1 1 5658 232 4982 5311 6287 6287 4356;4357 TTSAGTGGMWR 11 Phospho (STY) _T(ph)TSAGTGGMWR_ T(0.414)T(0.172)S(0.414)AGTGGMWR T(0)T(-3.81)S(0)AGT(-34.9)GGMWR 0 0 1 0 P60468 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 717.327087402344 2 602.744463 1203.47437 37301.2357784517 1.4913 0.00089889 190100 114.58 190100 114.58 717.325981514016 55.852 0.7931 55.852 55.393 56.186 0 68 26 4 0.804691468354494 0.00323727590957967 0.045280795270098 0.00012037 1 13053 126.59 108.26 4 69021000 68123 37484 68352 41023 27653 71783 28768 48372 42770 11293 64463 35430 68317 42399 30495 70306 29613 49768 41607 11753 1 1 1 1 1 1 1 1 1 1 5659 740 4983 5312 6288 6288 1226;4486 TTSGYAGGLSSAYGGLTSPGLSYSLGSSFGSGAGSSSFSR 40 Phospho (STY) _TTSGYAGGLSSAYGGLTS(ph)PGLSYSLGSSFGSGAGSSSFSR_ TTSGYAGGLSSAYGGLT(0.132)S(0.867)PGLS(0.001)YSLGSSFGSGAGSSSFSR T(-112.26)T(-112.26)S(-107.44)GY(-120.01)AGGLS(-67.25)S(-59.66)AY(-47.81)GGLT(-8.19)S(8.19)PGLS(-27.72)Y(-43.03)S(-48.52)LGS(-68.01)S(-73.14)FGS(-90.78)GAGS(-112.22)S(-116.83)S(-121.29)FS(-130.5)R 0 0 1 0 CON__P05787;P05787 CON__P05787 CON__P05787 KRT8 Keratin, type II cytoskeletal 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1009.96789550781 4 952.177082 3804.67922 30708.9773211073 1.0353 0.00098581 60168 57.29 60169 57.291 1009.71862820376 99.226 0.25674 99.226 99.095 99.352 -1.4211E-14 40 8 6 0.918732593181687 0.0140680905243184 0.233595551244115 1.0435E-13 1 23030 209.1 194.43 19 134780000 2575.7 7682.4 2369.2 6776.9 2932.1 1978.5 1089.7 4699.3 6539 44800 2436.5 7252.2 2400.9 6936.5 2921.4 2315.8 1346.9 5958.2 6220.9 42294 1 1 1 1 1 1 1 1 1 1 + 5660 24 4984 5313 6289 6289 42 TTSGYAGGLSSAYGGLTSPGLSYSLGSSFGSGAGSSSFSR 40 Phospho (STY) _TTSGYAGGLSSAYGGLTS(ph)PGLSYSLGSSFGSGAGSSSFSR_ TTSGYAGGLSSAYGGLT(0.149)S(0.842)PGLS(0.007)Y(0.001)SLGSSFGSGAGSSSFSR T(-90.46)T(-90.46)S(-90.79)GY(-88.45)AGGLS(-60.25)S(-52.7)AY(-37.02)GGLT(-7.51)S(7.51)PGLS(-20.99)Y(-28.22)S(-34.17)LGS(-53.32)S(-59.51)FGS(-77.47)GAGS(-99.69)S(-104.88)S(-109.54)FS(-117.99)R 0 0 1 0 CON__P05787;P05787 CON__P05787 CON__P05787 KRT8 Keratin, type II cytoskeletal 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1346.28991699219 3 1269.23368 3804.67922 26858.8214263933 1.2338 0.001566 60185 76.388 60186 76.39 1345.95609753497 99.227 0.31428 99.227 99.123 99.438 0 37 10 7 0 0 0 7.5336E-09 1 23082 152.98 141.24 19 84194000 1972 2337.9 2158.8 2471.2 1731.3 1930.1 2628.7 4876.3 2857.3 61510 1866.7 2209.3 2159.5 2520.5 1795.1 2111.6 2639 6630.6 2809.6 58032 1 1 1 1 1 1 1 1 1 1 + 5661 24 4984 5313 6290 6290 42 TTSISPALAR 10 Phospho (STY) _TTSIS(ph)PALAR_ TTS(0.002)IS(0.997)PALAR T(-37.13)T(-40.45)S(-26.09)IS(26.09)PALAR 0 0 1 0 Q9UKE5 Q9UKE5 Q9UKE5 TNIK TRAF2 and NCK-interacting protein kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.355895996094 2 548.773546 1095.53254 37824.4570047444 1.4974 0.00082176 208800 114.58 208800 114.58 663.355303275951 53.357 0.84412 53.357 52.956 53.801 -7.1054E-15 82 29 4 0.931724066177003 0.00950192053266219 0.135654391286539 1.5198E-09 1 12412 187.35 147.44 4 211020000 42212 135520 37796 136420 133150 36513 127520 104630 142500 9307.5 39927 128030 39469 138410 129430 41930 130490 102590 139970 11186 1 1 1 1 1 1 1 1 1 1 5662 2170 4985 5314 6291 6291 3911 TTSPLEEEER 10 Phospho (STY) _TTS(ph)PLEEEER_ T(0.004)T(0.002)S(0.994)PLEEEER T(-24.01)T(-28.02)S(24.01)PLEEEER 0 0 1 0 Q9UKV3 Q9UKV3 Q9UKV3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 750.346313476563 2 635.763572 1269.51259 36230.7279139138 1.8853 0.0011986 180230 114.58 180230 114.58 750.345002813619 41.31 0.68891 41.31 41.052 41.741 0 75 23 4 0.990285801425115 0.00671523900345368 0.127419294609018 5.5518E-29 1 9419 291.08 257.68 3 76238000 45540 67511 46540 52555 55668 44108 50252 52916 61880 5411.5 43097 63690 46907 54739 55888 44709 51731 52900 60564 6320.2 1 1 1 1 1 1 1 1 1 1 5663 2180 4986 5315 6292 6292 3943 TTSPNKGK 8 Phospho (STY) _T(ph)TSPNKGK_ T(0.985)T(0.013)S(0.002)PNKGK T(18.71)T(-18.71)S(-27.86)PNKGK 0 0 1 1 O75534 O75534 O75534 CSDE1 Cold shock domain-containing protein E1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.974975585938 3 304.811064 911.411362 42692.5239095115 2.0289 0.00061842 751820 229.16 751820 229.16 533.974408313253 30.96 0.57295 30.96 30.728 31.301 0 65 18 5 0.88149980894516 0.0120003511900866 0.389844782368261 0.033389 1 6890 64.711 38.7 3 250460000 41531 48350 44935 45750 29985 40804 28838 41063 53487 1507.2 39312 45659 44867 47054 31319 41127 30085 41225 51730 2369.6 1 1 1 1 1 1 1 1 1 1 5664 191 4987 5316 6293 6293 4342 TTSPPEVSGYSYEK 14 Phospho (STY) _TTS(ph)PPEVSGYSYEK_ TT(0.009)S(0.99)PPEVSGYSYEK T(-38.12)T(-20.38)S(20.38)PPEVS(-34.71)GY(-108.56)S(-48.84)Y(-102.33)EK 0 0 1 0 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1042.00219726563 2 812.842551 1623.67055 30852.4400766479 1.2108 0.0009842 281930 229.16 281930 229.16 1042.00417925486 61.73 0.64678 61.73 61.331 61.978 0 32 21 2 0.927333766191892 0.000338315275879677 0.00674408853033648 1.0981E-07 1 14527 173.25 128.26 7 9400600 2783.4 14385 3431.5 13143 3546.8 3621 3256.5 7126.2 15657 12451 2636.2 13582 3418.9 13418 3600.1 4122 3668.4 7387.4 14923 11889 1 1 1 1 1 1 1 1 1 1 5665 616 4988 5317 6294 6294 1018 TTSPPLSIPTTHLIHQPAGSR 21 Phospho (STY) _T(ph)TSPPLSIPTTHLIHQPAGSR_ T(0.362)T(0.362)S(0.275)PPLSIPTTHLIHQPAGSR T(0)T(0)S(-1.19)PPLS(-68.07)IPT(-103.63)T(-108.03)HLIHQPAGS(-127.17)R 0 0 1 0 Q5T5U3 Q5T5U3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 631.086730957031 4 573.54405 2290.1471 39716.8956875231 2.268 0.0013008 99888 57.29 99890 57.291 631.085103538535 68.228 0.55432 68.228 67.945 68.499 0 56 18 4 0.978360631562301 0.00343150558777518 0.0778745565725872 1.7638E-05 1 16005 132.94 113.62 7 15573000 3517.4 2858 3913.1 3202.2 3755.1 2634.8 2948.6 3037.8 4288.5 2824.3 3329.8 2701.8 3914 3257.8 3809.8 2676.7 3076.8 3116.6 4174.6 2729.8 1 1 1 1 1 1 1 1 1 1 5666 1187 4989 5318 6295 6295 4604;4605 TTSPSSDTDLLDR 13 Phospho (STY) _TTS(ph)PSSDTDLLDR_ T(0.091)T(0.091)S(0.815)PS(0.002)SDTDLLDR T(-9.52)T(-9.52)S(9.52)PS(-25.25)S(-35.44)DT(-62.71)DLLDR 0 0 1 0 Q96QT6 Q96QT6 Q96QT6 PHF12 PHD finger protein 12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 858.899353027344 2 744.3167 1486.61885 33642.2806372578 1.3759 0.0010241 153940 114.58 153940 114.58 859.401437079428 57.835 0.34535 57.835 57.589 57.935 7.1054E-15 23 11 3 0.95990686737555 0.000639804027545257 0.0305067559810174 2.0913E-10 1 13525 181.06 143.71 6 11813000 12457 8977 13512 10270 11574 13207 11780 12130 8945.3 14326 11792 8487.6 13522 10513 11860 13121 11903 12641 8946.6 13770 1 1 1 1 1 1 1 1 1 1 5667 1735 4990 5319 6296 6296 3185 TTSRSPVLSR 10 Phospho (STY) _TTSRS(ph)PVLSR_ T(0.001)T(0.002)S(0.008)RS(0.871)PVLS(0.118)R T(-28.07)T(-26.6)S(-20.52)RS(8.68)PVLS(-8.68)R 0 0 1 1 O95819 O95819 O95819 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 706.877380371094 2 592.295177 1182.5758 37621.3108980007 2.1833 0.0012931 193450 114.58 193460 114.58 706.876463178186 30.035 0.41801 30.035 29.806 30.224 0 42 13 4 0.892586516547114 0.00168181347870464 0.0522969916768678 0.0055604 1 6674 90.156 53.734 5 41330000 10576 15857 12039 14752 15757 11527 17602 14913 13478 3751.8 10013 14973 12088 15163 15793 11748 17715 14941 13474 3878 1 1 1 1 1 1 1 1 1 1 5668 266 4991 5320 6297 6297 446 TTTAAAVASTGPSSRSPSTLLPK 23 Phospho (STY) _TTTAAAVASTGPSSRS(ph)PSTLLPK_ TTTAAAVAST(0.002)GPS(0.27)S(0.27)RS(0.433)PS(0.02)T(0.005)LLPK T(-102.99)T(-96.89)T(-90.43)AAAVAS(-30.87)T(-24.32)GPS(-2.06)S(-2.06)RS(2.06)PS(-13.38)T(-19.08)LLPK 0 0 1 1 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 914.164733886719 3 761.052695 2280.13626 33689.8139016276 1.8971 0.0014438 200740 152.78 200750 152.78 914.162825929601 67.204 0.46577 67.204 66.891 67.357 0 52 15 4 0.966674489407097 0.00300879060180377 0.0470816602740247 5.4167E-08 1 15751 149.29 114.6 10 17878000 6386.4 12767 5950.2 13559 8552.9 5631.7 8609.6 10781 15106 12176 6041.5 12065 6048.6 13747 8532.7 6086.3 8939 10982 14630 11715 1 1 1 1 1 1 1 1 1 1 5669 491 4992 5321 6298 6298 811 TTTPGPSLSQGVSVDEK 17 Phospho (STY) _TTTPGPS(ph)LSQGVSVDEK_ T(0.061)T(0.061)T(0.23)PGPS(0.647)LS(0.001)QGVSVDEK T(-10.28)T(-10.28)T(-4.48)PGPS(4.48)LS(-26.88)QGVS(-38.96)VDEK 0 0 1 0 O60934 O60934 O60934 NBN Nibrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 747.719848632813 3 594.943423 1781.80844 36355.820522875 1.5373 0.00091458 256790 152.78 256790 152.78 747.719342522965 62.59 0.41213 62.59 62.405 62.817 -7.1054E-15 30 13 3 0.693268688008403 0.000901974043869391 0.0130252072420894 4.5505E-05 1 14711 121.59 101.88 6 10213000 11219 11027 11984 12861 13496 10507 14111 13005 13314 11295 10619 10427 12043 13056 13614 10689 14313 13288 13171 10937 1 1 1 1 1 1 1 1 1 1 5670 162 4993 5322 6299 6299 281;282 TTTPGPSLSQGVSVDEK 17 Phospho (STY) _TTTPGPSLS(ph)QGVSVDEK_ TTTPGPS(0.006)LS(0.994)QGVSVDEK T(-45.67)T(-45.67)T(-41.11)PGPS(-22.23)LS(22.23)QGVS(-67.76)VDEK 0 0 1 0 O60934 O60934 O60934 NBN Nibrin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 748.0556640625 3 594.943423 1781.80844 36568.9026039509 1.7283 0.0010282 256790 152.78 256790 152.78 747.719093294643 65.207 0.43148 65.207 64.995 65.427 0 33 14 3 0.979292852087851 0.00233682219713116 0.0733356577297509 5.2147E-05 1 15325 119.07 99.235 6 13155000 6248.8 8744.2 7140.1 8200.9 14849 8923 14106 10400 8905.7 7911.7 5916.3 8257.2 7231.4 8465.2 14598 8945.2 14252 10614 9007.8 7690.5 1 1 1 1 1 1 1 1 1 1 5671 162 4993 5322 6300 6300 281;282 TTTPPDSGVLFEGLGISTRPR 21 Phospho (STY) _TTT(ph)PPDSGVLFEGLGISTRPR_ T(0.132)T(0.132)T(0.737)PPDSGVLFEGLGISTRPR T(-7.48)T(-7.48)T(7.48)PPDS(-64.95)GVLFEGLGIS(-132.24)T(-132.24)RPR 0 0 1 1 Q9NS56 Q9NS56 Q9NS56 TOPORS E3 ubiquitin-protein ligase Topors MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 837.768005371094 3 761.045652 2280.11513 34762.6119774127 1.7149 0.0013051 100370 76.389 100380 76.39 837.768185910123 91.971 0.7114 91.971 91.598 92.31 0 63 24 4 0.813700880029631 0.0018891526886588 0.024551759707814 3.2045E-06 1 21446 138.08 118.69 6 10533000 4561.9 4894.2 4009.2 4659.2 6170.2 3932.3 5230.9 5872.9 4938.7 22535 4314.7 4622 4093.5 4786.6 6120.4 4040.7 5361.7 6494.8 4885.4 21356 1 1 1 1 1 1 1 1 1 1 5672 2023 4994 5323 6301 6301 4779 TTWGDGGENSPCNVVSK 17 Phospho (STY) _TTWGDGGENS(ph)PCNVVSK_ TTWGDGGENS(1)PCNVVSK T(-80.67)T(-80.67)WGDGGENS(80.67)PCNVVS(-110.8)K 0 0 1 0 O00161 O00161 O00161 SNAP23 Synaptosomal-associated protein 23 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 783.035400390625 3 629.924145 1886.75061 34684.2164787474 1.7235 0.0010857 242530 152.78 242530 152.78 782.700811133561 64.863 0.72027 64.863 64.564 65.284 0 95 24 6 0.929530009107798 0.00621182229671039 0.0689247111129744 5.5494E-08 2 15205 171.13 140.64 4 103380000 44827 45637 44893 44659 38615 48695 35872 42296 47429 29211 42418 43106 45119 45979 39529 48605 36962 43554 46308 28484 2 2 2 2 2 2 2 2 2 2 5673 34 4995 5324 6302;6303 6302 57 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 2 Phospho (STY) _TVAISDAAQLPHDYCTT(ph)PGGTLFSTT(ph)PGGTR_ TVAISDAAQLPHDYCT(0.253)T(0.745)PGGT(0.038)LFS(0.105)T(0.252)T(0.604)PGGT(0.003)R T(-80.58)VAIS(-66.04)DAAQLPHDY(-35.78)CT(-5.01)T(5.01)PGGT(-13.41)LFS(-7.6)T(-3.8)T(3.8)PGGT(-25.07)R 0 0 2 0 Q13542 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1194.87561035156 3 1118.15794 3351.452 28614.3938973885 1.3587 0.0015192 68314 76.386 68316 76.388 1194.87992957565 85.23 0.55251 85.23 85.038 85.59 1.4211E-14 39 18 3 0.744920038723546 0.00149752190791264 0.0286871181711251 4.7532E-05 1 19913 119.12 98.859 45 11370000 1616.4 3088 1670.4 2390.5 1626.6 1434.3 1575.3 2593 2742.8 20293 1529.8 2913.1 1678.2 2481.7 1653.6 1533.1 1637.9 3167.5 2656.8 19169 1 1 1 1 1 1 1 1 1 1 5674 965 4996 5325 6304 6304 1636;4547;4548 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 Phospho (STY) _TVAISDAAQLPHDYCTTPGGTLFSTT(ph)PGGTR_ TVAISDAAQLPHDYCTTPGGTLFS(0.007)T(0.182)T(0.54)PGGT(0.271)R T(-182.71)VAIS(-177.15)DAAQLPHDY(-150.26)CT(-123.35)T(-120.96)PGGT(-82.14)LFS(-19.18)T(-4.72)T(2.99)PGGT(-2.99)R 0 0 1 0 Q13542 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.672424316406 4 818.878694 3271.48567 33470.4315706118 1.2394 0.0010149 69963 57.291 69964 57.292 876.421160967893 86.121 0.51881 86.121 85.9 86.419 0 96 17 8 0.980473395666562 0.0172156263107381 0.494636075328658 5.4894E-12 1 20087 198.49 182 10 86856000 2867.6 7839.8 3673.9 7162.2 3746.3 2483.9 4932.1 5273.2 8143.6 15859 2716.5 7402.1 3656.1 7320.1 3817.3 2763.4 5051.5 5659.2 7899.1 15055 1 1 1 1 1 1 1 1 1 1 5675 965 4996 5326 6305 6305 1636;4547;4548 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 Phospho (STY) _TVAISDAAQLPHDYCTTPGGTLFS(ph)TTPGGTR_ TVAISDAAQLPHDYCT(0.003)T(0.041)PGGT(0.02)LFS(0.414)T(0.291)T(0.206)PGGT(0.025)R T(-109.67)VAIS(-94.39)DAAQLPHDY(-66.76)CT(-22.17)T(-10.03)PGGT(-13.05)LFS(1.53)T(-1.53)T(-3.04)PGGT(-12.18)R 0 0 1 0 Q13542 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1168.56762695313 3 1091.5025 3271.48567 29227.8953106494 1.154 0.0012596 69984 76.388 69986 76.389 1168.22540967319 86.143 0.34923 86.143 85.957 86.307 0 49 11 6 0.954244687770819 0.00488889773835472 0.174343938146868 1.3641E-07 1 20088 141.16 125.55 10 28237000 1379.5 5263.4 1918.2 5212.7 2093.5 1511.9 2187.6 3914.4 5994.1 16444 1307.4 4971.9 1902.9 5295.9 2119.1 1741.7 2326.5 4328.8 5753 15575 1 1 1 1 1 1 1 1 1 1 5676 965 4996 5326 6306 6306 1636;4547;4548 TVANLLSGKSPR 12 Phospho (STY) _TVANLLSGKS(ph)PR_ TVANLLSGKS(1)PR T(-134.17)VANLLS(-39.82)GKS(39.82)PR 0 0 1 1 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.341979980469 3 441.565782 1321.67552 40377.0773559075 1.7376 0.00076725 345990 152.78 345990 152.78 594.341443799749 71.646 1.1692 71.646 71.229 72.398 0 163 39 6 0.995757136984475 0.0856182780339911 1 1.3681E-07 1 16800 163.18 126.2 3 548140000 141410 172150 138070 153660 58157 129170 59470 124330 180720 1362.2 133790 162520 138240 158510 63869 130510 63793 124940 173170 4160 1 1 1 1 1 1 1 1 1 1 5677 953 4997 5327 6307 6307 1602 TVANLLSGKSPRK 13 Phospho (STY) _TVANLLSGKS(ph)PRK_ TVANLLS(0.036)GKS(0.964)PRK T(-46.55)VANLLS(-14.27)GKS(14.27)PRK 0 0 1 2 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 535.574157714844 4 363.449896 1449.77048 43873.3119776046 1.3456 0.00048905 472890 171.87 472890 171.87 535.573499824633 67.657 0.55868 67.657 67.416 67.975 0 38 18 3 0.968603834882949 0.00103737207204042 0.012704264006708 0.013314 1 15900 63.827 43.164 3 6087800 5272 5160.6 5157 5677.7 3529.3 5910.1 3527.3 4750.2 5648.3 2115.9 4988.2 4878 5179.5 5801.8 3679.6 5903.1 3648.7 4873.5 5483.2 2102.3 1 1 1 1 1 1 1 1 1 1 5678 953 4998 5328 6308 6308 1602 TVARTPLGQR 10 Phospho (STY) _TVART(ph)PLGQR_ TVART(1)PLGQR T(-34.41)VART(34.41)PLGQR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 469.927185058594 3 393.539567 1177.59687 45871.7618782315 0.33401 0.00013144 194100 76.388 194100 76.388 469.927485943178 33.021 0.54756 33.021 32.736 33.284 0 81 18 6 0.946171057330692 0.00302742995763183 0.0393560221882671 0.0006894 1 7347 101.43 51.948 2 222060000 17978 13970 18505 14219 12602 17097 11664 14328 13653 2120.6 17014 13199 18530 14631 13125 16978 11972 14543 13387 2328.4 1 1 1 1 1 1 1 1 1 1 5679 2226 4999 5329 6309 6309 4838 TVCSTYLQSR 10 Phospho (STY) _TVCSTY(ph)LQSR_ TVCSTY(1)LQSR T(-110.66)VCS(-48.37)T(-35.23)Y(35.23)LQS(-77.85)R 0 0 1 0 Q9H422 Q9H422 Q9H422 HIPK3 Homeodomain-interacting protein kinase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 762.360412597656 2 647.778502 1293.54245 35446.8832613662 1.6656 0.001079 176880 114.58 176890 114.58 762.360191755068 42.794 0.34672 42.794 42.654 43 0 25 11 3 0.980188524191476 0.000517628589871517 0.00965071151458207 6.4209E-10 1 9804 196.52 131.05 5 10684000 24091 15178 25260 24114 13185 25772 16057 16611 11464 9193.2 22800 14389 25226 24240 14129 25661 16081 17294 11506 9041 1 1 1 1 1 1 1 1 1 1 5680 1935 5000 5330 6310 6310 4885 TVDLGISDLEDDC 13 Unmodified _TVDLGISDLEDDC_ 0 0 0 0 Q8NHQ9 Q8NHQ9 Q8NHQ9 DDX55 ATP-dependent RNA helicase DDX55 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.895751953125 2 726.313954 1450.61335 34265.9904737621 1.2104 0.00087911 157760 114.58 157760 114.58 840.89587965226 87.731 0.4696 87.731 87.438 87.908 1.4211E-14 34 15 3 0.821428515208557 0.000946710150788657 0.0157168755935843 2.17E-06 1 20463 152.86 134.67 1 11424000 7078.8 6568.4 7891.9 7565.1 5841.7 6853.6 8248.2 7345.2 6164.9 30703 6701.4 6210.6 7879.4 7695.4 6081.3 6965.4 8223.3 8273.9 6171.3 29081 1 1 1 1 1 1 1 1 1 1 5681 1528 5001 5331 6311 6311 TVDSQGPTPVCTPTFLER 18 Phospho (STY) _TVDSQGPTPVCT(ph)PTFLER_ TVDSQGPT(0.001)PVCT(0.964)PT(0.036)FLER T(-97.54)VDS(-85.72)QGPT(-31.07)PVCT(14.32)PT(-14.32)FLER 0 0 1 0 Q9BYG3 Q9BYG3 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 772.041442871094 3 695.650134 2083.92857 35369.3970036373 1.6004 0.0011133 109810 76.388 109810 76.389 772.03844059646 76.302 0.49523 76.302 76.035 76.53 0 39 16 3 0.861633557972861 0.00203140552341499 0.0514269019336542 2.8913E-07 1 17884 149.12 125.08 5 9215200 6292.4 5444.6 6488.8 5557.6 4647.1 5787.5 5208.6 5800.9 5610.9 13399 5955 5144 6501.1 5703.1 4833 5816.2 5286 6221.9 5519.2 12751 1 1 1 1 1 1 1 1 1 1 5682 1871 5002 5332 6312 6312 4758 TVFPGAVPVLPASPPPK 17 Phospho (STY) _TVFPGAVPVLPAS(ph)PPPK_ TVFPGAVPVLPAS(1)PPPK T(-76.58)VFPGAVPVLPAS(76.58)PPPK 0 0 1 0 Q9UBC2 Q9UBC2 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 738.423278808594 3 585.314463 1752.92156 36826.6193195066 2.1257 0.0012442 261010 152.78 261020 152.78 738.423874281896 96.267 0.87307 96.267 95.879 96.752 -1.4211E-14 100 29 4 0.876952701505175 0.00224607519363291 0.0622558683319487 6.1668E-05 1 22342 115.46 90.144 2 15675000 4334.5 3383 3994.2 3901.1 3573.4 3682 3554.6 4089.3 3879.2 10836 4100.2 3198.8 4036.3 3970.4 3651.1 3725.9 3628.1 4412.6 3813.8 10298 1 1 1 1 1 1 1 1 1 1 5683 2117 5003 5333 6313 6313 3815 TVFPGAVPVLPASPPPKDSLR 21 Phospho (STY) _TVFPGAVPVLPAS(ph)PPPKDSLR_ TVFPGAVPVLPAS(1)PPPKDSLR T(-91.71)VFPGAVPVLPAS(41.14)PPPKDS(-41.14)LR 0 0 1 1 Q9UBC2 Q9UBC2 Q9UBC2 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.507080078125 3 742.395845 2224.16571 33298.2727949266 1.7308 0.001285 205790 152.78 205790 152.78 895.505303746098 90.791 0.9437 90.791 90.279 91.222 0 118 32 5 0.989114000027634 0.00383805859830141 0.0744292671629565 2.3731E-05 1 21100 125.82 111.56 3 58283000 11012 8369.6 10197 7268 6286.6 8546 6064.3 7510.2 7466.3 22681 10417 7900.2 10266 7550.4 6608.7 8538.7 6222 8256.9 7307.5 21531 1 1 1 1 1 1 1 1 1 1 5684 2117 5004 5334 6314 6314 3815 TVFSPTLPAAR 11 Phospho (STY) _TVFS(ph)PTLPAAR_ T(0.002)VFS(0.995)PT(0.003)LPAAR T(-26.48)VFS(25.11)PT(-25.11)LPAAR 0 0 1 0 Q7Z2W4 Q7Z2W4 Q7Z2W4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.894653320313 2 620.310296 1238.60604 36722.2617685109 1.7518 0.0010867 184720 114.58 184720 114.58 734.892312521718 76.516 0.95728 76.516 76.156 77.113 1.4211E-14 127 32 7 0.896110342817507 0.00365720650704817 0.271854438032975 1.6686E-07 1 17907 171.62 126.25 3 125150000 21874 13315 22219 13576 13956 22950 14802 17314 14235 12721 20699 12580 22254 14074 14662 22539 15011 17969 14069 12379 1 1 1 1 1 1 1 1 1 1 5685 1328 5005 5335 6315 6315 2384 TVGTPIASVPGSTNTGTVPGSEK 23 Phospho (STY) _TVGT(ph)PIASVPGSTNTGTVPGSEK_ T(0.215)VGT(0.785)PIASVPGSTNTGTVPGSEK T(-5.62)VGT(5.62)PIAS(-32.37)VPGS(-92.91)T(-115.74)NT(-136.96)GT(-141.87)VPGS(-162.55)EK 0 0 1 0 Q99460 Q99460 Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 899.473510742188 3 746.361417 2236.06242 32486.6978770226 2.044 0.0015255 204690 152.78 204700 152.78 899.471251118836 66.472 0.57619 66.472 66.2 66.776 -1.4211E-14 73 19 5 0.984403603988476 0.00413097812651421 0.0474159133392944 5.293E-12 1 15580 177.8 148.46 8 84108000 12101 14652 14197 12567 10278 12265 11382 12659 14437 10556 11458 13830 14129 13026 10680 12332 11617 13001 14116 10233 1 1 1 1 1 1 1 1 1 1 5686 1766 5006 5336 6316 6316 4745 TVGTRRQLGLVPR 13 Phospho (STY) _T(ph)VGTRRQLGLVPR_ T(0.5)VGT(0.5)RRQLGLVPR T(0)VGT(0)RRQLGLVPR 0 0 1 2 P52948 P52948 P52948 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 441.254943847656 4 383.965979 1531.83481 49283.0591450183 0.70396 0.0002703 149200 57.289 149200 57.289 441.255022127668 29.619 0.31816 29.619 29.488 29.806 0 22 10 3 0.958591207925888 0.00132132902533622 0.0113752819524691 0.053059 1 6610 44.294 20.618 2 9046500 13618 10893 14497 12517 10501 11941 8490.3 10432 12768 2045.4 12889 10299 14494 12743 10868 11980 8856.1 10584 12417 2167.4 1 1 1 1 1 1 1 1 1 1 5687 699 5007 5337 6317 6317 4481;4482 TVIIEQSWGSPK 12 Phospho (STY) _TVIIEQSWGS(ph)PK_ TVIIEQSWGS(1)PK T(-102.98)VIIEQS(-60.14)WGS(60.14)PK 0 0 1 0 P10809 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.676391601563 3 475.565559 1423.67485 39195.3706713639 1.6632 0.00079096 321250 152.78 321250 152.78 628.340993990514 81.271 1.1858 81.271 80.959 82.145 0 131 40 6 0.908456446744791 0.00423029975609567 0.0915251566455531 2.6093E-07 1 18982 151.8 128.79 3 89876000 6320.8 8489.6 6847.6 9066.9 8276.1 6880.7 7937.5 8596.5 9388.1 8238.6 5983.1 8023.1 6881.7 9239.2 8310.9 7031.5 8135.7 8804.7 9201.7 7956.6 1 1 1 1 1 1 1 1 1 1 5688 357 5008 5338 6318 6318 580 TVLGPDTAEPATAEAAVAPPDAGLPLPGLPAEGSPPPK 38 Phospho (STY) _TVLGPDTAEPATAEAAVAPPDAGLPLPGLPAEGS(ph)PPPK_ TVLGPDTAEPAT(0.006)AEAAVAPPDAGLPLPGLPAEGS(0.994)PPPK T(-46.18)VLGPDT(-42.54)AEPAT(-22.05)AEAAVAPPDAGLPLPGLPAEGS(22.05)PPPK 0 0 1 0 Q92667 Q92667 Q92667 AKAP1 A-kinase anchor protein 1, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1028.54504394531 4 913.710295 3650.81207 31031.0705547868 2.0818 0.0019021 125400 114.58 125400 114.58 1028.79082458043 100.27 0.19496 100.27 100.2 100.39 0 18 6 5 1 0.000219020180273135 0.00974612028459079 0.015215 1 23437 57.763 47.247 4 57504000 2937.7 8932.7 5234 9301.4 7223.9 6667.3 6389 7147.1 7268.6 78472 2788.4 8440.5 5161.1 9485.6 7202.3 6954.4 6567.7 9514.9 7134.6 74056 1 1 1 1 1 1 1 1 1 1 5689 1614 5009 5339 6319 6319 2981 TVMENFVAFVDK 12 Oxidation (M) _TVM(ox)ENFVAFVDK_ TVM(1)ENFVAFVDK TVM(76.59)ENFVAFVDK 0 1 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.344177246094 3 472.567361 1414.68025 40649.0350123419 1.6758 0.00079193 323290 152.78 323290 152.78 625.342475294381 91.951 0.54265 91.951 91.655 92.198 -1.4211E-14 47 18 4 0.935118768110026 0.00200528944366022 0.0484657665540789 0.0077113 1 21401 76.588 55.635 1 6881300 5511.4 5478.5 6166 5608.5 8338.6 6577.1 8808.4 4030.3 7174.2 5939.1 5217.7 5176.1 6198.7 5766.3 8338.9 6528.6 8898.9 4320.3 7148.1 5685.7 1 1 1 1 1 1 1 1 1 1 + 5690 22 5010 5340 6320 6320 1 TVMENFVAFVDK 12 Unmodified _TVMENFVAFVDK_ 0 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 620.012512207031 3 467.235722 1398.68534 40118.9441483013 1.3502 0.00063085 326980 152.78 326980 152.78 620.011718860908 100.91 0.11378 100.91 100.84 100.95 0 12 3 4 0.861200396507815 0.00379620776510424 0.0759084084937383 0.00012509 1 23664 111.39 90.435 1 47170000 9269.3 10288 9868.6 10836 8759.9 11013 11546 4121.7 11932 11906 8773.4 9722.2 9894.4 11095 8994.8 10967 11629 4760.2 11757 11306 1 1 1 1 1 1 1 1 1 1 + 5691 22 5010 5341 6321 6321 TVNSTRETPPK 11 Phospho (STY) _TVNSTRET(ph)PPK_ T(0.012)VNS(0.012)T(0.012)RET(0.964)PPK T(-19.09)VNS(-19.09)T(-19.09)RET(19.09)PPK 0 0 1 1 Q5SSJ5 Q5SSJ5 Q5SSJ5 HP1BP3 Heterochromatin protein 1-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 589.987609863281 3 437.209775 1308.6075 40650.2636051876 0.94323 0.00041239 349430 152.78 349430 152.78 589.985067124775 34.193 1.0535 34.193 33.497 34.55 0 124 35 4 0.649066847276413 0.0022386551585253 0.039348321605521 0.048962 1 7560 58.752 29.425 4 161950000 20741 17819 21991 23565 26564 22831 26078 21286 24026 3742 19631 16865 22127 23833 26679 22905 26513 21524 23794 4016.2 1 1 1 1 1 1 1 1 1 1 5692 1179 5011 5342 6322 6322 4599 TVNSTRETPPKSK 13 Phospho (STY) _TVNSTRET(ph)PPKSK_ T(0.002)VNS(0.002)T(0.002)RET(0.988)PPKS(0.006)K T(-26.43)VNS(-27.16)T(-27.62)RET(22.09)PPKS(-22.09)K 0 0 1 2 Q5SSJ5 Q5SSJ5 Q5SSJ5 HP1BP3 Heterochromatin protein 1-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 554.064575195313 4 381.940898 1523.73449 42301.2804828166 0.7267 0.00027756 450000 171.87 450000 171.87 553.812989239342 34.333 0.9945 34.333 33.556 34.55 0 90 33 4 0.685128669143358 0.0031534741584577 0.0120887026697461 0.041116 1 7674 50.722 41.071 5 81586000 27856 22515 29838 22269 44767 29478 44899 30982 24934 1964.5 26366 21268 30114 22996 44532 29248 45150 31078 25450 2566.9 1 1 1 1 1 1 1 1 1 1 5693 1179 5012 5343 6323 6323 4599 TVSDNSLSNSR 11 Phospho (STY) _TVS(ph)DNSLSNSR_ T(0.026)VS(0.973)DNS(0.001)LSNSR T(-15.74)VS(15.74)DNS(-30.13)LS(-66.74)NS(-71.88)R 0 0 1 0 Q96RU3 Q96RU3 Q96RU3 FNBP1 Formin-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.349182128906 2 630.266813 1258.51907 36042.7396754292 1.2606 0.00079451 181800 114.58 181800 114.58 744.847868797341 37.428 0.85234 37.428 37.183 38.035 0 69 32 4 0.930059942730952 0.000486810118167378 0.00186050332521889 0.00011863 1 8426 123.75 108.21 5 170920000 44556 20477 47517 19969 47022 48263 48292 40025 21759 7384.8 42173 19341 47673 20989 47740 47024 48369 40690 22595 7880 1 1 1 1 1 1 1 1 1 1 5694 1741 5013 5344 6324 6324 3196 TVSEPSLSGLLQIK 14 Phospho (STY) _TVS(ph)EPSLSGLLQIK_ T(0.112)VS(0.887)EPS(0.001)LSGLLQIK T(-8.99)VS(8.99)EPS(-31.92)LS(-99.2)GLLQIK 0 0 1 0 Q6N021 Q6N021 Q6N021 TET2 Methylcytosine dioxygenase TET2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.049560546875 3 517.939173 1550.79569 38772.1033731339 1.9484 0.0010091 294970 152.77 294970 152.78 670.714001714068 100.79 0.2261 100.79 100.67 100.9 0 22 7 4 0.971131764861507 0.00405200433192256 0.0489809909886229 1.0409E-15 1 23616 213.51 172.93 4 36679000 12389 12973 15440 14296 17780 16155 20871 19633 16322 19751 11735 12263 15406 14628 17944 16191 20972 20154 16298 19053 1 1 1 1 1 1 1 1 1 1 5695 1247 5014 5345 6325 6325 2208 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 Oxidation (M),Phospho (STY) _TVSLGAGAKDELHIVEAEAM(ox)NYEGS(ph)PIK_ TVSLGAGAKDELHIVEAEAM(1)NYEGSPIK TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK TVSLGAGAKDELHIVEAEAM(189.55)NYEGSPIK T(-177.05)VS(-174.36)LGAGAKDELHIVEAEAMNY(-102.98)EGS(102.98)PIK 0 1 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 929.234619140625 4 757.11106 3024.41513 32627.3081239167 2.0701 0.0015673 227010 171.87 227010 171.87 929.233570161695 97.047 0.5754 97.047 96.58 97.155 1.4211E-14 90 19 6 0.638044311074349 0.00222035223353694 0.027173862721628 1.0129E-11 2 22529 189.55 164.78 4 23935000 7697 11130 8022 9498.3 10635 9082.5 11517 11165 12335 52488 7284.5 10505 8092.7 9845.4 10652 9247.3 11703 12700 12137 49682 2 2 2 2 2 2 2 2 2 2 5696 315 5015 5346 6326;6327 6326 32 517 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 Oxidation (M),Phospho (STY) _TVSLGAGAKDELHIVEAEAM(ox)NYEGS(ph)PIK_ TVSLGAGAKDELHIVEAEAM(1)NYEGSPIK TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK TVSLGAGAKDELHIVEAEAM(155.86)NYEGSPIK T(-142.71)VS(-142.8)LGAGAKDELHIVEAEAMNY(-44.89)EGS(44.89)PIK 0 1 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 743.790954589844 5 605.890303 3024.41513 36230.8523214833 1.987 0.0012039 226940 137.5 226940 137.5 743.789158098 97.205 0.66585 97.205 96.922 97.588 0 52 22 4 0.943190804823058 0.00361214180917128 0.0532277013129883 1.6546E-07 1 22587 155.86 131.09 4 10201000 1503.6 2930.2 3282.6 2844.1 2767.6 2821.7 3100.3 3225.8 3425.6 11085 1429.5 2767.5 3197.4 2925.1 2843.9 2855.2 3148.8 3554.1 3366.2 10513 1 1 1 1 1 1 1 1 1 1 5697 315 5015 5346 6328 6328 32 517 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 Phospho (STY) _TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK_ TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK T(-234.23)VS(-231.56)LGAGAKDELHIVEAEAMNY(-141.95)EGS(141.95)PIK 0 0 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 740.391967773438 5 602.69132 3008.42022 35924.5229442493 1.8144 0.0010935 228140 137.5 228140 137.5 740.390750799623 98.996 0.23217 98.996 98.863 99.095 0 27 7 6 0.976050219171734 0.0163511515376474 0.34661948369654 4.7211E-25 1 22975 254.33 227.84 4 63626000 12014 18961 15220 19811 14254 14942 20508 18458 22489 9748.1 11380 17916 15142 20211 14613 15257 20629 18672 22106 9606.2 1 1 1 1 1 1 1 1 1 1 5698 315 5015 5347 6329 6329 517 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 Phospho (STY) _TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK_ TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK T(-152.95)VS(-150.32)LGAGAKDELHIVEAEAMNY(-66.35)EGS(66.35)PIK 0 0 1 1 P06748 P06748 P06748 NPM1 Nucleophosmin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 617.159057617188 6 502.410646 3008.42022 39733.2062892561 1.3144 0.00066035 228060 114.58 228060 114.58 617.326595879675 99.022 0.17579 99.022 98.92 99.095 0 17 5 4 0.834996206509514 0.00531193826383028 0.147552646820561 1.1827E-07 1 22980 161.61 139.51 4 19698000 4361.2 5949.8 4116.3 5795.5 4576.5 4770.5 5411.4 5807.8 6311.5 5716.6 4125.9 5619.7 4166.2 5943.6 4629.7 4851.3 5492.9 5957.7 6189.4 5517.3 1 1 1 1 1 1 1 1 1 1 5699 315 5015 5347 6330 6330 517 TVSLPLSSPNIK 12 Phospho (STY) _TVSLPLSS(ph)PNIK_ TVSLPLS(0.003)S(0.997)PNIK T(-82.37)VS(-82.95)LPLS(-25.25)S(25.25)PNIK 0 0 1 0 Q8IWZ3 Q8IWZ3 Q8IWZ3 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 598.678039550781 3 445.902171 1334.68468 41614.9917576625 1.4113 0.0006293 342620 152.78 342620 152.78 598.67736202988 84.407 0.44866 84.407 84.13 84.579 0 46 15 4 0.81704161418552 0.00253035177446717 0.025241546936034 7.6513E-05 1 19719 119.96 75.523 4 13886000 3423.3 8423.7 3436 8524.2 3723.6 3494.1 3884.6 5255.1 9427.8 3495.1 3239.3 7958.2 3463 8665.4 3769.2 3755.5 4098.3 5308.3 9067.3 3412.7 1 1 1 1 1 1 1 1 1 1 5700 1420 5016 5348 6331 6331 2587 TVSPGSVSPIHGQGQVVENLK 21 Phospho (STY) _TVSPGSVS(ph)PIHGQGQVVENLK_ TVSPGS(0.002)VS(0.998)PIHGQGQVVENLK T(-129.52)VS(-87.42)PGS(-27.43)VS(27.43)PIHGQGQVVENLK 0 0 1 0 Q9NZM3 Q9NZM3 Q9NZM3 ITSN2 Intersectin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 891.481018066406 3 738.370247 2212.08891 33165.6577258946 2.6846 0.0019822 206910 152.77 206910 152.78 891.479255488031 68.393 0.63733 68.393 68.005 68.643 0 88 21 6 0.986401243268335 0.00863854937729136 0.321260447865058 1.1448E-42 1 16030 357.88 330.75 4 128100000 14077 12593 16871 12274 20698 17140 26784 19336 14897 14008 13331 11895 16886 12701 20854 17017 26646 19732 15203 13638 1 1 1 1 1 1 1 1 1 1 5701 2084 5017 5349 6332 6332 3775 TVSPSTIR 8 Phospho (STY) _TVS(ph)PSTIR_ T(0.026)VS(0.681)PS(0.289)T(0.003)IR T(-14.15)VS(3.72)PS(-3.72)T(-23.09)IR 0 0 1 0 Q96JH7 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.311279296875 2 470.728607 939.442662 41895.0731141279 1.4267 0.00067157 243410 114.58 243410 114.58 585.310320529844 44.366 0.54461 44.366 44.051 44.596 0 49 18 3 0.572368926569894 0.00251175166736992 0.0573193094615003 0.020872 1 10197 66.273 16.855 4 43421000 55064 42225 54695 43914 39550 58528 48840 47155 46381 6591.1 52103 39898 54928 45221 41159 57883 49202 47940 45868 7297.7 1 1 1 1 1 1 1 1 1 1 5702 1698 5018 5350 6333 6333 3118 TVSQQSFDGVSLDSSGPEDR 20 Phospho (STY) _TVS(ph)QQSFDGVSLDSSGPEDR_ T(0.138)VS(0.857)QQS(0.005)FDGVSLDSSGPEDR T(-7.92)VS(7.92)QQS(-22.67)FDGVS(-110.25)LDS(-125.49)S(-129.77)GPEDR 0 0 1 0 Q6BDS2 Q6BDS2 Q6BDS2 UHRF1BP1 UHRF1-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 807.699035644531 3 730.977743 2189.9114 34978.9232946269 1.7863 0.0013058 104500 76.387 104500 76.388 807.362635941733 70.942 0.68876 70.942 70.596 71.285 -1.4211E-14 41 23 3 0.964639890700871 0.00170229829534155 0.0131509788162359 1.5158E-07 1 16657 141.21 94.323 6 17101000 4750.3 7547.1 5246 6355.7 6714.2 5388.9 6747.9 7238 7064.5 22105 4496.9 7122.7 5272 6583 6727.7 5509.5 6875.8 7854.7 6957.1 20982 1 1 1 1 1 1 1 1 1 1 5703 1234 5019 5351 6334 6334 2177 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 Phospho (STY) _TVSSPIPYTPSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR_ TVSSPIPYT(0.005)PS(0.002)PS(0.03)S(0.03)S(0.03)RPIS(0.902)PGLSYASHTVGFTPPTSLTR T(-114.62)VS(-106.98)S(-99.25)PIPY(-135.75)T(-22.56)PS(-27.3)PS(-14.72)S(-14.72)S(-14.72)RPIS(14.72)PGLS(-74.97)Y(-175.74)AS(-137.44)HT(-179.42)VGFT(-206.86)PPT(-242.64)S(-247.92)LT(-245.91)R 0 0 1 1 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1086.0556640625 4 1028.26095 4109.01469 29846.0968315403 1.2998 0.0013365 55717 57.291 55718 57.292 1086.05419927372 88.399 0.54133 88.399 88.082 88.623 -1.4211E-14 83 18 6 0.990940995567343 0.01202443810336 0.278748741056956 3.2351E-46 3 20619 348.25 319.06 18 52482000 6986 8071.3 7384.2 8188.8 6757.8 14005 16884 17184 9280.2 54642 6612.1 7625.3 7424 8494.3 7030.8 13921 16492 18760 9479.3 51849 3 3 3 3 3 3 3 3 3 3 5704 1101 5020 5352 6335;6336;6337 6337 1917;1918 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 2 Phospho (STY) _TVSS(ph)PIPYTPSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR_ T(0.018)VS(0.14)S(0.842)PIPYT(0.002)PS(0.027)PS(0.083)S(0.072)S(0.063)RPIS(0.753)PGLS(0.001)YASHTVGFTPPTSLTR T(-16.64)VS(-7.81)S(7.81)PIPY(-38.62)T(-26.31)PS(-14.4)PS(-9.6)S(-10.21)S(-10.81)RPIS(9.6)PGLS(-30.5)Y(-69.55)AS(-51.53)HT(-70.12)VGFT(-111.91)PPT(-122.37)S(-123.53)LT(-123.53)R 0 0 2 1 Q16204 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1105.79479980469 4 1048.25253 4188.98102 29726.3867681902 1.5149 0.001588 54654 57.291 54655 57.293 1106.29350260315 89.675 0.3224 89.675 89.548 89.87 0 24 10 4 0.945540439880883 0.00159018091464925 0.0172653408367804 1.2426E-10 4 20919 175.74 151.67 153 16307000 6969.3 9450.1 6205.7 8759.4 8059.4 7317.2 12115 13377 8876.7 80188 6591.9 8923.3 6323 9012.8 8123.6 7625.7 12049 15599 8896 75816 4 4 4 4 4 4 4 4 4 4 5705 1101 5020 5353 6338;6339;6340;6341 6340 1917;1918 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 Phospho (STY) _TVSS(ph)PPTSPRPGSAATVSASTSNIIPPR_ TVS(0.039)S(0.959)PPT(0.001)SPRPGSAATVSASTSNIIPPR T(-50.89)VS(-13.88)S(13.88)PPT(-28.71)S(-42.1)PRPGS(-68.16)AAT(-101.63)VS(-110.05)AS(-125.18)T(-123.47)S(-130.14)NIIPPR 0 0 1 1 O76094 O76094 O76094 SRP72 Signal recognition particle subunit SRP72 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1015.86199951172 3 939.13771 2814.3913 31179.5877047464 1.171 0.0010997 81339 76.388 81340 76.389 1015.86032311966 61.779 2.4822 61.779 61.009 63.491 0 307 84 4 0.955854389958188 0.00402026812130206 0.072381295456913 3.2839E-18 2 14592 241.37 193.61 11 47266000 6559.5 15300 7523.3 13785 16561 8216.7 18530 16653 16272 25454 6210.5 14445 7634.5 14157 16298 8638.3 18706 17144 16151 24354 2 2 2 2 2 2 2 2 2 2 5706 211 5021 5354 6342;6343 6343 369;370 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 2 Phospho (STY) _TVSS(ph)PPTS(ph)PRPGSAATVSASTSNIIPPR_ T(0.009)VS(0.029)S(0.961)PPT(0.24)S(0.76)PRPGSAATVSASTSNIIPPR T(-20.16)VS(-15.19)S(15.19)PPT(-5.02)S(5.02)PRPGS(-61.78)AAT(-80.54)VS(-82.04)AS(-94)T(-99.83)S(-105.57)NIIPPR 0 0 2 1 O76094 O76094 O76094 SRP72 Signal recognition particle subunit SRP72 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1042.51721191406 3 965.793154 2894.35763 29924.6667143989 1.0292 0.00099398 79094 76.389 79095 76.39 1042.51615804777 65.424 2.9973 65.424 64.271 67.269 0 430 102 6 0.983578531064045 0.00917002377589114 0.187843911694848 3.5741E-12 3 15373 203.96 169.55 55 47219000 12241 23561 13067 24881 36917 14432 43160 29647 25899 50402 11586 22264 13414 25298 36127 15218 43161 30667 26287 48146 3 3 3 3 3 3 3 3 3 3 5707 211 5021 5355 6344;6345;6346 6345 369;370 TVSSSSLPSLEEYEPR 16 Phospho (STY) _TVS(ph)SSSLPSLEEYEPR_ T(0.002)VS(0.916)S(0.075)S(0.006)S(0.001)LPSLEEYEPR T(-26.57)VS(10.85)S(-10.85)S(-21.5)S(-31.94)LPS(-55.44)LEEY(-86.47)EPR 0 0 1 0 P42694 P42694 P42694 HELZ Probable helicase with zinc finger domain MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1046.00354003906 2 930.916778 1859.819 30489.3529901788 1.3458 0.0012528 123080 114.58 123090 114.58 1045.49908060793 82.712 0.57236 82.712 82.428 83 0 30 19 2 0.220310902286857 0.000337121302391275 0.00480921060289656 0.00016383 1 19372 110.97 92.707 7 9887300 4460.4 5903.9 4780.6 5805.2 5245.3 3933.7 5552.7 7753.4 6334 59813 4221.8 5576.6 4801.6 5936.6 5300.6 4187 5658.8 9431.4 6216.6 56501 1 1 1 1 1 1 1 1 1 1 5708 591 5022 5356 6347 6347 963 TVSTSSQPEENVDR 14 Phospho (STY) _TVSTS(ph)SQPEENVDR_ TVS(0.033)T(0.033)S(0.467)S(0.467)QPEENVDR T(-40.59)VS(-11.57)T(-11.57)S(0)S(0)QPEENVDR 0 0 1 0 P42684 P42684 P42684 ABL2 Abelson tyrosine-protein kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 929.427429199219 2 814.843614 1627.67267 32784.0822516881 1.9719 0.0016068 140620 114.58 140620 114.58 929.92708022727 36.33 0.54553 36.33 36.145 36.691 0 36 18 3 0.926116366951324 0.00020505397382613 0.00784797418758665 7.2872E-23 1 8215 273.99 192.42 5 8859600 6938.8 6620.5 9055.9 7267 11283 7211.8 10730 8989.4 8310.9 10701 6573.8 6257.9 9023.3 7421.2 11308 7273.7 10883 9270.6 8303 10285 1 1 1 1 1 1 1 1 1 1 5709 590 5023 5357 6348 6348 959;960 TVTCVTVVEPEAPPSPDVLQAATHR 25 Phospho (STY) _TVTCVTVVEPEAPPS(ph)PDVLQAATHR_ TVTCVTVVEPEAPPS(1)PDVLQAATHR T(-104.16)VT(-97.37)CVT(-75.73)VVEPEAPPS(50.19)PDVLQAAT(-50.19)HR 0 0 1 0 Q9P1Y6 Q9P1Y6 Q9P1Y6 PHRF1 PHD and RING finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 995.500366210938 3 918.777125 2753.30955 31482.1777285561 2.2389 0.002057 83141 76.388 83143 76.39 995.499471527744 79.363 0.62643 79.363 79.078 79.704 1.4211E-14 82 21 5 0.974922784944006 0.00243513617125409 0.0565886733588729 5.0451E-08 1 18576 162.58 144.85 5 22055000 3453.3 3174.7 3490.5 3367.2 4819.7 3698.5 3493.1 3448.4 3511.7 19044 3267.8 3000.1 3526.3 3450.9 4793.8 3725.2 3619.9 4042.5 3464.2 18012 1 1 1 1 1 1 1 1 1 1 5710 2096 5024 5358 6349 6349 3790 TVTPASSAK 9 Phospho (STY) _TVT(ph)PASSAK_ T(0.044)VT(0.956)PASSAK T(-13.38)VT(13.38)PAS(-40.48)S(-52.43)AK 0 0 1 0 Q16555 Q16555 Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 700.384521484375 2 471.220615 940.426677 37493.7168822364 2.337 0.0011012 486320 229.16 486320 229.16 700.383476498012 38.01 0.46957 38.01 37.741 38.211 0 51 15 4 0.813172081741075 0.00286329579449276 0.079571641651157 6.0949E-05 1 8580 136.49 38.256 4 71337000 86255 18477 86599 20407 31004 78598 28407 44723 21040 5890.6 81620 17465 86495 21770 34702 75772 28838 46351 21073 6581.8 1 1 1 1 1 1 1 1 1 1 5711 1107 5025 5359 6350 6350 4584 TVTVTRPTGVSFKK 14 Phospho (STY) _TVTVTRPTGVS(ph)FKK_ TVTVTRPT(0.006)GVS(0.994)FKK T(-74.34)VT(-69.15)VT(-57.91)RPT(-22)GVS(22)FKK 0 0 1 2 A5YKK6 A5YKK6 A5YKK6 CNOT1 CCR4-NOT transcription complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 573.090576171875 4 400.966916 1599.83856 40591.2384655299 1.5873 0.00063645 428640 171.87 428650 171.87 572.83905322843 61.702 0.4734 61.702 61.476 61.949 0 64 15 6 0.974197547733785 0.00931805219943672 0.0899668386139261 0.00017321 1 14475 104.45 65.417 5 70980000 37520 36767 38652 40105 38394 39104 35349 43089 39299 3123.3 35508 34752 38846 40959 38938 39297 36236 43161 38609 3938.2 1 1 1 1 1 1 1 1 1 1 5712 7 5026 5360 6351 6351 17 TVYLQSALSSSTSAEK 16 Phospho (STY) _TVYLQSALSSSTS(ph)AEK_ TVYLQSALSS(0.004)S(0.012)T(0.245)S(0.738)AEK T(-90.12)VY(-100.37)LQS(-74.22)ALS(-41.63)S(-22.57)S(-17.82)T(-4.79)S(4.79)AEK 0 0 1 0 O14681 O14681 O14681 EI24 Etoposide-induced protein 2.4 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.717102050781 3 584.608152 1750.80263 37486.9279541616 2.2513 0.0013162 261330 152.77 261330 152.78 737.717338938194 77.291 0.37274 77.291 77.085 77.458 0 32 12 4 0.950042349460927 0.00158007213878548 0.0197309427263318 9.8825E-05 1 18133 110.75 96.186 8 6083200 4824.5 4785.9 4377.7 4407.1 5260.2 4162 5675 5213.2 4634.9 12640 4563.6 4518.9 4445.4 4544.2 5290.9 4219.7 5728.2 5569.3 4617.4 12023 1 1 1 1 1 1 1 1 1 1 5713 61 5027 5361 6352 6352 100 TWGDLGAAAGGGTPSK 16 Phospho (STY) _TWGDLGAAAGGGT(ph)PSK_ TWGDLGAAAGGGT(0.985)PS(0.015)K T(-87.33)WGDLGAAAGGGT(18.1)PS(-18.1)K 0 0 1 0 P31323 P31323 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.338928222656 3 509.227606 1524.66099 38390.8208097901 2.678 0.0013637 300010 152.77 300020 152.78 662.001931470493 74.074 0.5174 74.074 73.785 74.302 1.4211E-14 51 17 4 0.985810718347168 0.00342561558011337 0.0371522961108511 0.00012791 1 17375 115.74 89.595 3 22414000 4974.1 13085 5226.6 13084 5054.5 4867.8 6109 7630.7 14298 6417.9 4707.8 12361 5248.2 13302 5162.1 5292.7 6392.1 7740.5 13760 6219.8 1 1 1 1 1 1 1 1 1 1 5714 519 5028 5362 6353 6353 4444 TWSEKDLR 8 Phospho (STY) _TWS(ph)EKDLR_ T(0.355)WS(0.645)EKDLR T(-2.6)WS(2.6)EKDLR 0 0 1 1 Q92879 Q92879 Q92879 CELF1 CUGBP Elav-like family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 524.945434570313 3 372.169139 1113.48559 42850.1797033096 1.2794 0.00047614 410500 152.77 410500 152.78 524.944001344951 56.594 0.50431 56.594 56.337 56.841 0 44 16 4 0.81378642160702 0.00228969575096018 0.0858866250952892 0.011378 1 13220 69.261 35.375 2 11237000 9138.2 13212 10296 12414 8854 10167 7760.5 11583 15611 3622.3 8651.4 12476 10282 12758 9062.1 10316 8167 11673 15070 3678.9 1 1 1 1 1 1 1 1 1 1 5715 1627 5029 5363 6354 6354 3009 TWTLCGTPEYLAPEIILSK 19 Phospho (STY) _TWT(ph)LCGTPEYLAPEIILSK_ T(0.492)WT(0.508)LCGTPEYLAPEIILSK T(-0.13)WT(0.13)LCGT(-35)PEY(-101.31)LAPEIILS(-180.28)K 0 0 1 0 P22694;P22612;P17612 P22694 P22694 PRKACB;PRKACG;PRKACA cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma;cAMP-dependent protein kinase catalytic subunit alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 911.148376464844 3 758.037217 2271.08982 32075.9934512855 1.4998 0.0011369 201540 152.78 201540 152.78 911.14773875301 102.14 0.12006 102.14 102.07 102.19 0 9 3 4 0.951043536872879 0.00849459780712145 0.0936465297067882 4.4381E-11 1 24060 197.85 173.5 5 40441000 14801 8628.9 15278 8384.6 19557 16715 22205 15040 9101.3 114440 14007 8150 15414 8757.8 19619 16577 22117 18599 9536 108110 1 1 1 1 1 1 1 1 1 1 5716 462 5030 5364 6355 6355 4424 TYADYESVNECMEGVCK 17 Unmodified _TYADYESVNECMEGVCK_ 0 0 0 0 P84090 P84090 P84090 ERH Enhancer of rudimentary homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.054443359375 3 685.609519 2053.80673 33894.5439331699 1.8396 0.0012612 222830 152.78 222830 152.78 838.717817630589 70.852 0.69885 70.852 70.333 71.032 0 72 23 5 0.933535379025751 0.00311382416294329 0.0234262722446824 6.4728E-05 1 16618 117 95.222 1 32084000 12257 15909 11595 15540 16592 15036 21886 17355 19801 17287 11596 15027 11785 15971 16616 15156 21967 17840 19627 16680 1 1 1 1 1 1 1 1 1 1 5717 811 5031 5365 6356 6356 TYSAPAINAIQGGSFESPK 19 Phospho (STY) _TYS(ph)APAINAIQGGSFESPK_ T(0.147)YS(0.853)APAINAIQGGSFESPK T(-7.64)Y(-56.64)S(7.64)APAINAIQGGS(-129)FES(-150.35)PK 0 0 1 0 Q9H4L5 Q9H4L5 Q9H4L5 OSBPL3 Oxysterol-binding protein-related protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 826.424438476563 3 673.313739 2016.91939 34294.6545393697 2.1467 0.0014454 226900 152.78 226900 152.78 826.423569050633 82.784 0.45701 82.784 82.543 83 0 47 15 4 0.978394242733597 0.00415639448811106 0.0196214998828592 6.447E-11 1 19375 177.91 154.34 5 18410000 5495.7 19572 5285.5 18146 8523.5 4929.6 8065.6 9615 20363 13686 5199.6 18481 5373.1 18507 8463.7 5615.6 8568.8 9875.4 19570 13109 1 1 1 1 1 1 1 1 1 1 5718 1939 5032 5366 6357 6357 3514 TYSAPAINAIQGGSFESPKK 20 Phospho (STY) _TYS(ph)APAINAIQGGSFESPKK_ TYS(1)APAINAIQGGSFESPKK T(-41.15)Y(-105.31)S(41.15)APAINAIQGGS(-134.71)FES(-161.17)PKK 0 0 1 1 Q9H4L5 Q9H4L5 Q9H4L5 OSBPL3 Oxysterol-binding protein-related protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 945.511535644531 3 716.01206 2145.01435 32408.3818495205 2.1348 0.0015285 320060 229.16 320060 229.17 945.510517932071 77.483 0.40903 77.483 77.281 77.69 0 46 13 4 0.980162679928771 0.00508716838162218 0.0955396572153043 9.7305E-17 1 18163 243.35 220.92 5 17820000 3330.9 23967 3292.1 21600 7417.5 4225.4 9333.2 11192 25265 17559 3151.7 22627 3371.3 22044 7325.9 5131.3 9844.6 11486 24254 16793 1 1 1 1 1 1 1 1 1 1 5719 1939 5033 5367 6358 6358 3514 TYSLTTPAR 9 Phospho (STY) _TYS(ph)LTTPAR_ T(0.038)YS(0.962)LTTPAR T(-14.03)Y(-69.26)S(14.03)LT(-33.87)T(-51.08)PAR 0 0 1 0 Q9Y4H2 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.834899902344 2 545.252447 1088.49034 NaN NaN NaN NaN NaN NaN NaN NaN 52.411 1 52.411 51.911 52.911 0 NaN NaN NaN 0.0013339 1 12198 102.52 56.062 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5720 2281 5034 5368 6359 6359 4218 TYSSPGSFK 9 Phospho (STY) _TYSS(ph)PGSFK_ T(0.001)YS(0.274)S(0.724)PGS(0.002)FK T(-31.43)Y(-69.4)S(-4.22)S(4.22)PGS(-26.29)FK 0 0 1 0 Q8N3Z6 Q8N3Z6 Q8N3Z6 ZCCHC7 Zinc finger CCHC domain-containing protein 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 756.385314941406 2 527.218072 1052.42159 37001.3522225153 1.7973 0.00094756 434670 229.16 434670 229.17 756.382697675027 59.794 0.68033 59.794 59.427 60.107 7.1054E-15 58 23 3 0.910198728994494 0.00121333662997643 0.013825212197931 0.00039761 1 14007 117.25 74.913 5 19454000 38922 41373 37900 36203 22980 39679 24638 35379 38065 15902 36826 39054 38042 37544 24238 39593 25368 36133 36989 15792 1 1 1 1 1 1 1 1 1 1 5721 1465 5035 5369 6360 6360 2712 TYTHEVVTLWYR 12 Phospho (STY) _TYT(ph)HEVVTLWYR_ T(0.049)YT(0.951)HEVVTLWYR T(-12.9)Y(-55.65)T(12.9)HEVVT(-78.74)LWY(-113.34)R 0 0 1 0 P24941;Q00526 P24941 P24941 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.311096191406 3 549.923746 1646.74941 39355.8435420612 1.1895 0.00065415 138910 76.387 138910 76.388 626.645345327193 85.881 0.88623 85.881 85.505 86.391 1.4211E-14 102 30 5 0.98310094603071 0.0022784244796634 0.022108403745718 6.4347E-05 1 20003 128.73 107.17 5 32413000 3613.7 4549.3 3199 3743.3 3121.4 3456.4 3311.6 4379.6 4769.2 4408.1 3417.9 4293 3244.5 3888.1 3176.2 3497.2 3401.7 4490.1 4644 4252.1 1 1 1 1 1 1 1 1 1 1 5722 471 5036 5370 6361 6361 4432 VAAAAGSGPSPPGSPGHDR 19 2 Phospho (STY) _VAAAAGSGPS(ph)PPGS(ph)PGHDR_ VAAAAGS(0.007)GPS(0.993)PPGS(1)PGHDR VAAAAGS(-21.29)GPS(21.29)PPGS(46.57)PGHDR 0 0 2 0 Q9BTU6 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.976745605469 3 616.587295 1846.74006 37360.2632187097 1.9435 0.0011983 123890 76.387 123890 76.389 693.308432520196 38.542 1.5642 38.542 37.829 39.393 0 157 53 4 0.962679623333455 0.00192461372769157 0.0358167442278796 8.5244E-05 1 8675 106.11 94.051 3 40857000 11160 10493 13095 10360 12839 11643 12791 12864 11964 5257.1 10568 9911.7 13072 10666 13043 11639 13000 13015 11840 5247.9 1 1 1 1 1 1 1 1 1 1 5723 1827 5037 5371 6362 6362 3345;3346 VAAAPDEDLDGDDEDDAEDENNIDNR 26 Unmodified _VAAAPDEDLDGDDEDDAEDENNIDNR_ 0 0 0 0 Q9BXV9 Q9BXV9 Q9BXV9 C14orf142 Uncharacterized protein C14orf142 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1021.43719482422 3 944.711457 2831.11254 31760.8204015093 1.0522 0.00099398 80858 76.388 80859 76.389 1021.43328232594 55.52 0.37841 55.52 55.335 55.713 0 36 12 4 0.976696619474167 0.00141299732229052 0.0170835982515425 1.253E-25 1 12961 285.38 268.85 1 14549000 3926.7 3214.9 3575.9 3004.2 3019.6 2969.4 3191.5 4084.6 3857.3 5854.1 3714.3 3035.8 3614.4 3096.9 3100.2 3002.9 3258.6 4230.3 3777.7 5606.8 1 1 1 1 1 1 1 1 1 1 5724 1867 5038 5372 6363 6363 VAAETQSPSLFGSTK 15 Phospho (STY) _VAAETQS(ph)PSLFGSTK_ VAAET(0.003)QS(0.9)PS(0.097)LFGSTK VAAET(-24.92)QS(9.66)PS(-9.66)LFGS(-89.03)T(-94.51)K 0 0 1 0 Q9UKX7 Q9UKX7 Q9UKX7 NUP50 Nuclear pore complex protein Nup50 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 687.694396972656 3 534.918549 1601.73382 37785.5882842552 2.369 0.0012672 285600 152.77 285610 152.78 687.693420748554 73.964 0.65763 73.964 73.616 74.273 0 75 22 4 0.737258345339099 0.0029110751633541 0.0409859538195232 3.2048E-05 1 17344 131.67 108.43 5 37299000 15384 14856 13911 16114 8771.5 16326 11160 14539 16256 8802.3 14552 14041 14034 16472 9243.4 16349 11385 14918 15823 8624.9 1 1 1 1 1 1 1 1 1 1 5725 2181 5039 5373 6364 6364 3944 VADNSFDAK 9 Phospho (STY) _VADNS(ph)FDAK_ VADNS(1)FDAK VADNS(107.52)FDAK 0 0 1 0 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.874206542969 2 523.713154 1045.41176 35893.6631279647 1.6401 0.00085896 437570 229.16 437570 229.16 752.875721693008 55.167 0.93324 55.167 54.868 55.801 -7.1054E-15 72 31 3 0.78503643712453 0.00180721614343837 0.0162997036547644 0.00057412 1 12857 107.52 76.092 1 35020000 43514 55576 45625 49361 34483 43248 41598 50354 54424 74828 41184 52466 45697 50963 35764 43852 42353 52488 53156 71625 1 1 1 1 1 1 1 1 1 1 5726 1035 5040 5374 6365 6365 1783 VADNSFDAKR 10 Phospho (STY) _VADNS(ph)FDAKR_ VADNS(1)FDAKR VADNS(86.4)FDAKR 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.928039550781 2 601.76371 1201.51287 NaN NaN NaN NaN NaN NaN NaN NaN 46.145 1 46.145 45.645 46.645 0 NaN NaN NaN 0.01543 1 10647 86.405 57.106 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5727 1035 5041 5375 6366 6366 1783 VAGAATPK 8 Phospho (STY) _VAGAAT(ph)PK_ VAGAAT(1)PK VAGAAT(93.11)PK 0 0 1 0 P16402 P16402 P16402 HIST1H1D Histone H1.3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.857727050781 2 397.694036 793.373519 40184.9021334449 1.7024 0.00067702 576230 229.16 576230 229.16 626.856775922878 39.49 0.54549 39.49 39.197 39.742 0 35 15 3 0.998887613597037 0.00185292961166774 0.0383868489311314 0.0076369 1 8984 93.111 52.759 1 19216000 19006 25180 22018 25362 23750 19548 21334 21267 29171 4827.2 17996 23788 22014 25936 23973 19884 22047 21411 28450 5037.6 1 1 1 1 1 1 1 1 1 1 5728 408 5042 5376 6367 6367 4403 VAGGAAPSKPASAK 14 Phospho (STY) _VAGGAAPSKPAS(ph)AK_ VAGGAAPS(0.005)KPAS(0.995)AK VAGGAAPS(-23.32)KPAS(23.32)AK 0 0 1 1 Q14978 Q14978 Q14978 NOLC1 Nucleolar and coiled-body phosphoprotein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.382873535156 3 431.218382 1290.63332 38143.6133309998 2.3126 0.00099722 531430 229.16 531430 229.16 660.381096826092 42.949 0.35267 42.949 42.737 43.09 0 25 11 3 0.844205137063419 0.00164921657730365 0.0125410950763334 0.0050096 1 9827 87.654 62.861 2 28386000 24933 25796 24184 25999 25131 25575 24494 27768 31152 5624.7 23590 24369 24406 26676 25444 25692 25146 27937 30455 5938.9 1 1 1 1 1 1 1 1 1 1 5729 1035 5043 5377 6368 6368 1784 VAIAALEVLEEENLAENADK 20 Unmodified _VAIAALEVLEEENLAENADK_ 0 0 0 0 P04181 P04181 P04181 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.148498535156 3 714.370591 2140.08994 NaN NaN NaN NaN NaN NaN NaN NaN 101.69 1 101.69 101.19 102.19 0 NaN NaN NaN 0.00016298 1 23921 103.17 89.141 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5730 291 5044 5378 6369 6369 VAKSPAK 7 Phospho (STY) _VAKS(ph)PAK_ VAKS(1)PAK VAKS(50.29)PAK 0 0 1 1 Q02539 Q02539 Q02539 HIST1H1A Histone H1.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 489.968505859375 3 260.805361 779.394255 45691.1148634918 1.1129 0.00029026 878670 229.16 878670 229.16 489.968123342736 37.658 0.70304 37.658 37.48 38.183 0 72 23 5 0.991665287531146 0.00264065873898166 0.0148011345442924 0.030704 1 8516 50.292 24.25 1 40428000 64307 33492 30240 17773 11638 57340 26098 54243 19447 2516.3 60723 31549 32208 19844 13107 55674 25689 54606 19471 3624.8 1 1 1 1 1 1 1 1 1 1 5731 851 5045 5379 6370 6370 1373 VALSDDETKETENMR 15 Phospho (STY) _VALS(ph)DDETKETENMR_ VALS(0.997)DDET(0.003)KETENMR VALS(25.48)DDET(-25.48)KET(-37.89)ENMR 0 0 1 1 Q15054 Q15054 Q15054 POLD3 DNA polymerase delta subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.703796386719 3 606.592284 1816.75502 35687.9137360489 1.6146 0.00097943 251860 152.77 251860 152.78 759.701475495807 56.106 1.3923 56.106 55.536 56.928 7.1054E-15 109 46 4 0.949940117958491 0.0034316741126732 0.0279616846936588 0.00010742 1 13092 114.46 98.695 3 46395000 35963 20009 34923 21076 23917 36366 23875 28057 20534 22613 34026 18908 35091 21821 24917 35708 24214 29147 20403 21942 1 1 1 1 1 1 1 1 1 1 5732 1052 5046 5380 6371 6371 1818 VANSPTMVNLLLGK 14 Phospho (STY) _VANS(ph)PTMVNLLLGK_ VANS(0.917)PT(0.083)MVNLLLGK VANS(10.44)PT(-10.44)MVNLLLGK 0 0 1 0 Q6UB99 Q6UB99 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 666.04296875 3 512.933365 1535.77827 38415.3370347628 1.0933 0.00056078 297850 152.78 297850 152.78 665.708788568564 101.49 0.16764 101.49 101.39 101.56 0 18 5 5 0.979601983663871 0.0108716214235247 0.249985571319912 1.3582E-10 1 23859 188.58 136.7 2 47394000 6543.3 34126 8391.8 34037 27387 6990.3 27997 24879 35903 14056 6198.6 32237 8577.5 34519 26687 8464.7 28686 24686 35090 13811 1 1 1 1 1 1 1 1 1 1 5733 1280 5047 5381 6372 6372 2278 VAPEEHPVLLTEAPLNPK 18 Unmodified _VAPEEHPVLLTEAPLNPK_ 0 0 0 0 P60709;P63261 P60709;P63261 P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.853515625 4 489.271558 1953.05713 41629.1706615785 1.4122 0.00069097 234190 114.58 234190 114.58 603.853218629984 76.739 0.90333 76.739 76.095 76.998 0 52 30 4 0.860291904547256 0.00116147258276238 0.0222355014196605 1.6076E-07 1 18012 149.44 31.109 1 10121000 4878 3266.1 4435.5 3259.9 4601.2 4592.8 4938.5 3642.9 3608 2656.9 4614.2 3085.3 4494.4 3369 4663 4537.2 4974.3 3771 3616.5 2586.1 1 1 1 1 1 1 1 1 1 1 5734 742;783 5048 5382 6373 6373 VAPVINNGSPTILGK 15 Phospho (STY) _VAPVINNGS(ph)PTILGK_ VAPVINNGS(1)PTILGK VAPVINNGS(38.57)PT(-38.57)ILGK 0 0 1 0 Q13330 Q13330 Q13330 MTA1 Metastasis-associated protein MTA1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.387268066406 3 520.611279 1558.81201 37915.6224214623 1.7625 0.00091758 293450 152.78 293460 152.78 673.38690696507 84.022 0.62896 84.022 83.615 84.244 0 70 21 4 0.766275866926895 0.0028780985368922 0.040235703478224 5.0106E-05 1 19591 127.61 107.48 2 51542000 10042 8893.2 11084 9425 9103.7 9554.8 10151 10505 9818.9 14055 9506.4 8404.1 11078 9646.9 9369.8 9609.8 10273 10924 9702.3 13478 1 1 1 1 1 1 1 1 1 1 5735 946 5049 5383 6374 6374 1574 VAQRSPVDSGTILR 14 Phospho (STY) _VAQRS(ph)PVDSGTILR_ VAQRS(0.996)PVDS(0.002)GT(0.002)ILR VAQRS(26.59)PVDS(-26.59)GT(-26.59)ILR 0 0 1 1 P49454 P49454 P49454 CENPF Centromere protein F MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.324523925781 3 526.938167 1577.79267 45200.8556615813 0.53008 0.00027932 144960 76.386 144960 76.386 603.32435074437 51.714 0.40399 51.714 51.517 51.921 0 21 13 3 0.787747310717477 0.000774671542132587 0.0045895183902486 0.0020659 1 12032 96.012 52.63 3 39676000 17172 21517 18171 19683 14076 16931 14991 17253 21411 3244.4 16253 20316 18192 20277 14545 17104 15392 17391 20854 3454.3 1 1 1 1 1 1 1 1 1 1 5736 640 5050 5384 6375 6375 1059 VAQRSPVDSGTILREPTTK 19 Phospho (STY) _VAQRS(ph)PVDSGTILREPTTK_ VAQRS(1)PVDSGTILREPTTK VAQRS(42)PVDS(-42)GT(-54.16)ILREPT(-119.6)T(-123.41)K 0 0 1 2 P49454 P49454 P49454 CENPF Centromere protein F MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.362426757813 4 534.526863 2134.07835 39403.8168153796 1.5717 0.00084011 214360 114.58 214360 114.58 649.359920068411 56.244 0.4426 56.244 56.011 56.454 0 41 14 4 0.963578905770111 0.00320945789928883 0.0313183140196646 1.2702E-07 1 13129 153.31 132.11 5 19577000 10902 12291 10887 12638 8139.6 9763 8978.3 10552 14574 5680.6 10316 11613 10932 12909 8439.5 9934.8 9252.1 10725 14143 5593.1 1 1 1 1 1 1 1 1 1 1 5737 640 5051 5385 6376 6376 1059 VASDTEEADR 10 Phospho (STY) _VASDT(ph)EEADR_ VAS(0.379)DT(0.621)EEADR VAS(-2.15)DT(2.15)EEADR 0 0 1 0 Q9P2R6 Q9P2R6 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.310180664063 2 586.72699 1171.43943 37688.4195510489 1.6171 0.00094878 195290 114.58 195290 114.58 701.307580374735 31.963 0.47631 31.963 31.791 32.267 3.5527E-15 26 15 2 0.947788142767862 0.000641727235510947 0.0425291409139037 0.00037821 1 7163 113.67 76.824 2 5502600 9913.6 11015 10608 10514 12535 8787.5 11346 9997.9 11603 4230 9383.4 10403 10663 10798 12590 8908.3 11614 10109 11438 4214.4 1 1 1 1 1 1 1 1 1 1 5738 2114 5052 5386 6377 6377 4799 VASEAPLEHKPQVEASSPR 19 Phospho (STY) _VASEAPLEHKPQVEAS(ph)SPR_ VASEAPLEHKPQVEAS(0.813)S(0.187)PR VAS(-130.81)EAPLEHKPQVEAS(6.37)S(-6.37)PR 0 0 1 1 Q8TD19 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.592529296875 4 528.758488 2111.00485 40883.5765326009 0.89704 0.00047432 216700 114.58 216700 114.58 643.590704055527 51.794 0.52307 51.794 51.488 52.011 0 42 17 3 0.580997851329719 0.00132728213588435 0.00405548696628446 1.4607E-07 1 12033 154.86 126.28 3 25048000 25190 26646 28462 29292 23720 31654 28686 31701 32420 12941 23849 25187 28423 29953 24424 31648 29064 32187 31831 12920 1 1 1 1 1 1 1 1 1 1 5739 1546 5053 5387 6378 6378 2839 VASMPLISSTCDMVSAAYASTK 22 Phospho (STY) _VAS(ph)MPLISSTCDMVSAAYASTK_ VAS(1)MPLISSTCDMVSAAYASTK VAS(60.05)MPLIS(-60.05)S(-84.54)T(-89.6)CDMVS(-134.6)AAY(-150.32)AS(-162.95)T(-164.81)K 0 0 1 0 O60664 O60664 O60664 PLIN3 Perilipin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 944.132263183594 3 790.68575 2369.03542 31940.3455235453 0.90918 0.00071888 193220 152.77 193220 152.78 943.793692017782 101.49 0.40161 101.49 101.3 101.7 0 40 13 6 0.953341482525699 0.0215935312560811 0.7383477677307 1.1542E-08 1 23848 170.58 150.49 8 156810000 36902 33114 41118 34021 17597 41708 26661 44230 37541 83487 34934 31287 40890 34999 19385 41652 27001 46784 36580 79636 1 1 1 1 1 1 1 1 1 1 5740 152 5054 5388 6379 6379 258 VASPLDQNGSFNVVIK 16 Phospho (STY) _VAS(ph)PLDQNGSFNVVIK_ VAS(1)PLDQNGSFNVVIK VAS(70.38)PLDQNGS(-70.38)FNVVIK 0 0 1 0 Q8IWI9 Q8IWI9 Q8IWI9 MGA MAX gene-associated protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.739929199219 3 589.960748 1766.86042 NaN NaN NaN NaN NaN NaN NaN NaN 91.112 1 91.112 90.612 91.612 0 NaN NaN NaN 2.0605E-05 1 21230 132.76 85.474 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5741 1416 5055 5389 6380 6380 2582 VASPPIK 7 Unmodified _VASPPIK_ 0 0 0 0 Q06203 Q06203 Q06203 PPAT Amidophosphoribosyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 390.593353271484 3 237.818168 710.432676 50969.7883108885 0.58014 0.00013797 642400 152.78 642400 152.78 390.593373602168 53.806 0.58507 53.806 53.534 54.119 0 52 19 4 0.985654721342148 0.00213325051291651 0.0321673415540273 0.054794 1 12526 35.633 6.323 1 24902000 55245 29757 54173 30011 36216 52371 38212 39677 31773 818.8 52272 28112 54395 31158 37835 51339 38624 40315 31624 1689.3 1 1 1 1 1 1 1 1 1 1 5742 874 5056 5390 6381 6381 VASPTSGVK 9 Phospho (STY) _VAS(ph)PTSGVK_ VAS(0.998)PT(0.002)SGVK VAS(27.02)PT(-27.02)S(-47.22)GVK 0 0 1 0 Q9Y4H2 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.387512207031 2 463.223158 924.431763 37827.9763130947 1.3608 0.00063035 494710 229.16 494720 229.16 692.386156063764 47.125 0.46783 47.125 46.799 47.267 0 35 15 3 0.888157593811877 0.00331023326057838 0.135996391062696 4.8954E-06 1 10869 155.53 109.38 3 48562000 61220 20209 57360 20299 28150 54781 29428 35638 21362 8438.2 57915 19091 57625 21391 30301 53146 29673 36743 21420 8770.3 1 1 1 1 1 1 1 1 1 1 5743 2281 5057 5391 6382 6382 4219 VASSPVMVSNPATR 14 Phospho (STY) _VASS(ph)PVMVSNPATR_ VAS(0.002)S(0.998)PVMVSNPATR VAS(-27.1)S(27.1)PVMVS(-88.31)NPAT(-140.92)R 0 0 1 0 P51610 P51610 P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.934509277344 2 748.352366 1494.69018 33326.1863611127 1.3397 0.0010026 153110 114.58 153110 114.58 862.933482052893 55.005 0.57942 55.005 54.728 55.307 0 56 19 4 0.966777214373567 0.000579217299768446 0.00404743194157282 1.9526E-31 1 12822 306.65 271.9 4 31176000 13213 17928 13408 19335 13644 15942 13734 16263 17867 14130 12504 16944 13493 19713 13837 16161 14088 16726 17454 13681 1 1 1 1 1 1 1 1 1 1 5744 681 5058 5392 6383 6383 1145 VASSSSSPK 9 Phospho (STY) _VASSSS(ph)SPK_ VASS(0.001)S(0.001)S(0.824)S(0.175)PK VAS(-56.35)S(-30.63)S(-30.84)S(6.74)S(-6.74)PK 0 0 1 0 Q15652 Q15652 Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.363220214844 2 465.202422 928.390292 37386.7753792261 1.9651 0.00091415 492610 229.16 492610 229.16 694.365041473896 33.461 0.59123 33.461 33.284 33.875 0 37 20 3 0.981695748406191 0.00145898378392581 0.00730819773228492 3.7294E-09 1 7485 188.6 127.01 5 30317000 35496 19488 35767 18498 12421 38484 12765 23245 20094 3511.4 33590 18404 35715 19374 13995 37498 13178 24012 19515 3844.4 1 1 1 1 1 1 1 1 1 1 5745 1086 5059 5393 6384 6384 1888 VATLNSEEESDPPTYK 16 Phospho (STY) _VATLNS(ph)EEESDPPTYK_ VAT(0.001)LNS(0.999)EEESDPPTYK VAT(-31.04)LNS(31.04)EEES(-39.65)DPPT(-103.04)Y(-112.92)K 0 0 1 0 Q00341 Q00341 Q00341 HDLBP Vigilin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.381530761719 3 620.603066 1858.78737 35354.8966174557 1.6556 0.0010275 246170 152.78 246170 152.78 773.378171624715 64.365 0.67523 64.365 64.035 64.711 0 68 22 4 0.992224276840532 0.00245340691435379 0.0148656665881522 3.2802E-08 1 15095 174.02 145.69 5 26355000 11462 10490 10470 9946.9 11860 12432 13133 12051 10920 8880.6 10842 9906.7 10619 10286 11969 12362 13247 12370 10869 8641 1 1 1 1 1 1 1 1 1 1 5746 821 5060 5394 6385 6385 1316 VAVATPAK 8 Phospho (STY) _VAVAT(ph)PAK_ VAVAT(1)PAK VAVAT(77.66)PAK 0 0 1 0 P19338 P19338 P19338 NCL Nucleolin MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.881164550781 2 418.717511 835.42047 NaN NaN NaN NaN NaN NaN NaN NaN 49.618 1 49.618 49.118 50.118 0 NaN NaN NaN 0.033959 1 11519 77.662 49.454 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5747 437 5061 5395 6386 6386 4418 VAVATPAKK 9 Phospho (STY) _VAVAT(ph)PAKK_ VAVAT(1)PAKK VAVAT(98.9)PAKK 0 0 1 1 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.341918945313 3 322.179087 963.515433 42449.2565483848 1.4258 0.00045936 711290 229.16 711290 229.16 551.342087021673 47.775 0.49702 47.775 47.511 48.008 7.1054E-15 61 16 5 0.992799644934697 0.00398744884481259 0.0395198224286668 0.0039232 1 11043 98.902 61.574 1 63001000 55260 21966 61173 19364 12391 57357 12064 31545 22442 1865.4 52313 20735 60660 20652 15460 55476 12580 32698 21703 2486.5 1 1 1 1 1 1 1 1 1 1 5748 437 5062 5396 6387 6387 4418 VDATEESDLAQQYGVR 16 Unmodified _VDATEESDLAQQYGVR_ 0 0 0 0 P07237 P07237 P07237 P4HB Protein disulfide-isomerase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 670.670959472656 3 594.283117 1779.82752 38441.1745411645 1.8772 0.0011156 128540 76.387 128540 76.388 670.669848510519 67.018 0.34228 67.018 66.807 67.149 0 29 11 3 0.91472585341466 0.00217004616432433 0.037391417746969 8.2944E-16 1 15744 222.16 185.01 1 8939300 6320.3 5329.7 6556.7 5798.4 6365.5 5311.6 6028.5 5632.4 5382.7 5877 5981.5 5037.4 6585.7 5917.2 6465.6 5360.9 6134.9 5814.4 5338.5 5664.3 1 1 1 1 1 1 1 1 1 1 5749 316 5063 5397 6388 6388 VDDFLANEAK 10 Unmodified _VDDFLANEAK_ 0 0 0 0 P52209 P52209 P52209 PGD 6-phosphogluconate dehydrogenase, decarboxylating MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.437805175781 2 561.277303 1120.54005 35258.5702357725 2.2172 0.0012445 408280 229.16 408280 229.16 790.435577632523 76.797 0.38131 76.797 76.617 76.998 0 21 12 2 0.704335583637767 0.000880060022296704 0.0099526127538298 0.043575 1 18034 75.566 53.522 1 7761400 11861 8226 11853 7880 13644 11629 15680 11994 8671.5 15178 11223 7768.8 11961 8172.3 13762 11522 15672 12474 8853.4 14569 1 1 1 1 1 1 1 1 1 1 5750 687 5064 5398 6389 6389 VDDKPSSPGDSSK 13 Phospho (STY) _VDDKPSS(ph)PGDSSK_ VDDKPS(0.016)S(0.984)PGDSSK VDDKPS(-17.99)S(17.99)PGDS(-45.14)S(-52)K 0 0 1 1 Q9HC52 Q9HC52 Q9HC52 CBX8 Chromobox protein homolog 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 696.027587890625 3 466.864333 1397.57117 37809.0552591672 1.5905 0.00074256 490860 229.16 490860 229.16 696.027338945109 40.555 0.95893 40.555 40.265 41.224 0 68 32 4 0.984053803576808 0.00411751194195687 0.0370881694672518 3.4815E-07 1 9211 155.88 111.68 4 43469000 35775 28895 37119 28388 26597 39220 26065 34065 28749 17133 33858 27293 37169 29353 27607 38796 26631 34885 28253 16921 1 1 1 1 1 1 1 1 1 1 5751 1983 5065 5399 6390 6390 3602 VDEFPLCGHMVSDEYEQLSSEALEAAR 27 Unmodified _VDEFPLCGHMVSDEYEQLSSEALEAAR_ 0 0 0 0 P27635 P27635 P27635 RPL10 60S ribosomal protein L10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1105.18676757813 3 1028.13047 3081.36957 29647.1364031241 1.3932 0.0014324 74296 76.386 74298 76.388 1105.18622522156 99.48 0.08466 99.48 99.438 99.522 0 4 2 2 0.74841581108709 0.00041927691134544 0.0104803517180798 0.0050118 1 23129 90.097 78.131 1 46990000 6019 8072.7 5381.9 7063.4 6294.5 5994.4 6170.6 8304.5 5858.4 90402 5693.1 7620.2 5466.8 7296.9 6331.7 6255.4 6278.6 10964 5793.7 85316 1 1 1 1 1 1 1 1 1 1 5752 486 5066 5400 6391 6391 VDFGSSER 8 Phospho (STY) _VDFGS(ph)SER_ VDFGS(0.943)S(0.057)ER VDFGS(12.21)S(-12.21)ER 0 0 1 0 Q6ZUM4 Q6ZUM4 Q6ZUM4 ARHGAP27 Rho GTPase-activating protein 27 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 603.2724609375 2 488.692222 975.369891 40534.7833703842 1.5041 0.00073506 234470 114.58 234470 114.58 603.273413874628 51.47 0.58285 51.47 51.136 51.718 0 59 19 4 0.955074946540948 0.00210949495546841 0.0224958080692533 0.010951 1 11930 84.31 41.446 2 47611000 17258 8575.2 18770 8918 34210 18688 36865 21441 9113.8 3983.2 16337 8102.7 19008 9292.8 33816 18338 36638 21520 10170 4246.9 1 1 1 1 1 1 1 1 1 1 5753 1304 5067 5401 6392 6392 2329 VDGPRSPSYGR 11 Phospho (STY) _VDGPRS(ph)PSYGR_ VDGPRS(1)PSYGR VDGPRS(37.01)PS(-37.01)Y(-102.44)GR 0 0 1 1 Q07955 Q07955 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 500.578979492188 3 424.190715 1269.55031 44051.5615153407 0.76901 0.00032621 180080 76.388 180080 76.388 500.578824607163 32.631 1.048 32.631 32.208 33.256 0 137 35 6 0.970036933840931 0.0404724370697987 0.338384748143944 3.4891E-10 1 7266 179.56 124.33 3 725790000 70662 83081 74114 73187 100770 68018 109260 91138 88012 1302.1 66878 78427 74772 75667 100790 68701 110230 90562 87742 3335.3 1 1 1 1 1 1 1 1 1 1 5754 884 5068 5402 6393 6393 1436;1437 VDGPRSPSYGR 11 2 Phospho (STY) _VDGPRS(ph)PS(ph)YGR_ VDGPRS(0.999)PS(0.997)Y(0.005)GR VDGPRS(29.23)PS(24.54)Y(-24.54)GR 0 0 2 1 Q07955 Q07955 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.349365234375 2 675.765599 1349.51665 35561.5204502373 1.1924 0.00080576 169560 114.58 169560 114.58 790.347403006056 34.533 2.4704 34.533 33.556 36.026 0 203 84 3 0.978587739835701 0.000885425178780793 0.0205819497832486 0.0083171 3 7606 83.541 62.502 3 44752000 38999 37467 38611 37517 31189 37598 33332 35691 39199 17749 36901 35394 38815 38519 32125 37692 33987 36410 38429 17539 3 3 3 3 3 3 3 3 3 3 5755 884 5068 5403 6394;6395;6396 6394 1436;1437 VDIDVPDVNIEGPDAK 16 Unmodified _VDIDVPDVNIEGPDAK_ 0 0 0 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 719.063415527344 3 565.952708 1694.8363 37148.8443355216 1.7449 0.00098755 269940 152.78 269950 152.78 718.727890759547 86.65 0.51775 86.65 86.419 86.936 1.4211E-14 57 17 5 0.889089966347603 0.00385926852602881 0.0569393191415459 6.7959E-07 1 20225 138.91 0 1 17490000 16700 10436 19558 11661 6798.6 19044 6086.1 12882 13251 15145 15813 9865.5 19372 12017 7649.2 18710 6425.5 13616 12770 14559 1 1 1 1 1 1 1 1 1 1 5756 896 5069 5404 6397 6397 VDIDVPDVNLEAPEGK 16 Unmodified _VDIDVPDVNLEAPEGK_ 0 0 0 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 723.736083984375 3 570.624592 1708.85195 39968.2886515888 2.0087 0.0011462 267730 152.78 267740 152.78 723.73449895686 88.464 0.37062 88.464 88.253 88.623 0 29 12 4 0.706643235596168 0.000506464174686249 0.0143691542556016 0.011937 1 20654 72.446 56.308 1 5306900 5819.8 4702.2 7140.1 5391.7 5690.8 6281.1 5587.5 6077.5 6307.8 9956.2 5512 4445.9 7095.9 5508.3 5859.8 6272.4 5712.3 6404 6193.4 9515.6 1 1 1 1 1 1 1 1 1 1 5757 896 5070 5405 6398 6398 VDIEAPDVSLEGPEGK 16 Unmodified _VDIEAPDVSLEGPEGK_ 0 0 0 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.054992675781 3 552.277192 1653.80975 37125.1082492031 1.4705 0.0008121 276630 152.78 276630 152.78 705.387891952539 81.034 0.49653 81.034 80.81 81.307 0 42 16 4 0.889669437907828 0.00148762045766891 0.0345622523241165 6.2113E-07 1 18973 142.1 117.54 1 10681000 10379 6252.5 10018 6704.6 4170.5 10096 4317.5 7130.1 7549.4 23094 9820.2 5909.1 10037 6910.9 4582.6 9974.4 4476.3 7962.8 7312 21910 1 1 1 1 1 1 1 1 1 1 5758 896 5071 5406 6399 6399 VDKGVVPLAGTDGETTTQGLDGLSER 26 Unmodified _VDKGVVPLAGTDGETTTQGLDGLSER_ 0 0 0 1 P09972 P09972 P09972 ALDOC Fructose-bisphosphate aldolase C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1025.55456542969 3 872.443478 2614.3086 30912.2015026246 1.4923 0.0013019 175110 152.78 175110 152.78 1025.5534334415 76.165 0.61283 76.165 75.832 76.444 0 63 20 5 0.951962571573643 0.00523353732996579 0.0718056134091962 1.0025E-32 1 17862 306.47 284.67 1 20454000 5708.2 6240.4 6989.6 5314.2 9814.2 6616.5 11520 7660.9 6802.3 20798 5406.2 5889.8 7002.3 5533.9 9812.4 6626.2 11515 8270.6 6911.9 19761 1 1 1 1 1 1 1 1 1 1 5759 346 5072 5407 6400 6400 VDLHTSGEHSELVQEENLSPGTQTPSNDK 29 Phospho (STY) _VDLHTSGEHSELVQEENLS(ph)PGTQTPSNDK_ VDLHTSGEHSELVQEENLS(1)PGTQTPSNDK VDLHT(-90.67)S(-91.13)GEHS(-84.66)ELVQEENLS(43)PGT(-43)QT(-79.6)PS(-95.6)NDK 0 0 1 0 Q9Y2X9 Q9Y2X9 Q9Y2X9 ZNF281 Zinc finger protein 281 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 922.699157714844 4 807.86367 3227.42557 33240.8216149486 1.5006 0.0012123 141830 114.58 141830 114.58 922.696073458816 59.809 0.45797 59.809 59.621 60.079 -7.1054E-15 46 15 4 0.87324593820902 0.000876812437857607 0.015976187698817 7.5706E-12 2 14057 186.23 159.18 7 13877000 6500.5 7234.1 6567.7 7236.3 7854.8 7490.1 7925.2 7517.1 8234.3 45638 6151.4 6833.8 6625.3 7433.9 7896.3 7582.6 8072.2 8914.3 8111.7 43148 2 2 2 2 2 2 2 2 2 2 5760 2260 5073 5408 6401;6402 6402 4188 VDNLTYRTSPDTLR 14 Phospho (STY) _VDNLTYRTS(ph)PDTLR_ VDNLTYRT(0.023)S(0.977)PDTLR VDNLT(-59.57)Y(-105.77)RT(-16.35)S(16.35)PDT(-34.48)LR 0 0 1 1 Q01130 Q01130 Q01130 SRSF2 Serine/arginine-rich splicing factor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.331176757813 3 577.608486 1729.80363 38318.6656431986 1.5924 0.00091979 132250 76.387 132250 76.388 653.996129690834 59.151 0.8042 59.151 58.817 59.621 7.1054E-15 112 27 6 0.990325792184011 0.0154767624721008 0.292643043832865 2.6781E-07 1 13827 164.59 151.47 5 357910000 19184 27959 18696 24481 26861 21690 34986 26902 28876 6654 18151 26392 18969 25303 26886 21944 35055 26983 28751 6888.2 1 1 1 1 1 1 1 1 1 1 5761 832 5074 5409 6403 6403 1341;4505 VDPFTPR 7 Unmodified _VDPFTPR_ 0 0 0 0 REV__P51813 REV__P51813 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.802795410156 2 416.221603 830.428653 44107.8882335279 0.71952 0.00029948 275290 114.58 275290 114.58 530.803029728721 55.002 0.49722 55.002 54.782 55.279 0 28 16 2 0.948409584723241 0.000638925335723778 0.00427994896465105 0.051745 1 12837 77.748 41.353 1 11390000 56122 98238 57672 90802 57961 58282 64829 75904 97837 1796.9 53112 92760 57999 93164 58931 60095 66564 75508 95136 3448.7 1 1 1 1 1 1 1 1 1 1 + 5762 2331 5075 5410 6404 6404 VDPSLMEDSDDGPSLPTK 18 Unmodified _VDPSLMEDSDDGPSLPTK_ 0 0 0 0 O15258 O15258 O15258 RER1 Protein RER1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 787.737426757813 3 634.959423 1901.85644 35600.6897941073 1.8293 0.0011615 240610 152.78 240610 152.78 787.734970387014 78.654 0.34417 78.654 78.432 78.777 0 22 11 3 0.950531937323888 0.000987264161746189 0.0154485402329989 5.3201E-05 1 18434 113.33 102.06 1 11323000 11533 14086 12394 13694 9070.1 10699 10656 12212 12257 10673 10916 13305 12393 14036 9424.6 10897 10815 12512 12026 10332 1 1 1 1 1 1 1 1 1 1 5763 86 5076 5411 6405 6405 VDSLLENLEK 10 Unmodified _VDSLLENLEK_ 0 0 0 0 P07910;P0DMR1;O60812;B7ZW38;B2RXH8 P07910 P07910 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.474731445313 2 580.313886 1158.61322 36809.345751622 2.2348 0.0012969 394900 229.16 394900 229.16 809.477188748949 98.069 0.28905 98.069 97.876 98.165 0 15 9 2 0.966124880577176 0.000329657677115971 0.0260401181368274 0.00097827 1 22780 113.47 49.175 1 3789600 5293 4832.5 5568.5 5654.4 5318.8 5274.5 5887.2 5524.5 5189.6 21008 5009.5 4569.8 5589.4 5749.5 5419.6 5346.6 5946.3 6164.8 5150.2 19910 1 1 1 1 1 1 1 1 1 1 5764 324 5077 5412 6406 6406 VDSPSHGLVTSSLCIPSPAR 20 Phospho (STY) _VDS(ph)PSHGLVTSSLCIPSPAR_ VDS(0.988)PS(0.012)HGLVTSSLCIPSPAR VDS(19.05)PS(-19.05)HGLVT(-116.52)S(-148.28)S(-180.5)LCIPS(-251.87)PAR 0 0 1 0 Q9UER7 Q9UER7 Q9UER7 DAXX Death domain-associated protein 6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.399780273438 3 720.676683 2159.00822 35047.9763046218 1.967 0.0014176 105990 76.387 106000 76.389 797.398104766343 77.085 1.2126 77.085 76.245 77.458 0 130 38 5 0.995210633087339 0.0176644403340622 0.0707779010810014 2.0549E-31 1 18070 292.49 273.2 6 79280000 10002 15305 10803 13352 11288 9797.8 15219 14000 14731 11862 9467.3 14447 10845 13772 11482 10055 15289 14238 14556 11494 1 1 1 1 1 1 1 1 1 1 5765 2135 5078 5413 6407 6407 3842 VDSPTVTTTLK 11 Phospho (STY) _VDS(ph)PTVTTTLK_ VDS(1)PTVTTTLK VDS(36.8)PT(-36.8)VT(-68.69)T(-91.38)T(-100.53)LK 0 0 1 0 Q07866 Q07866 Q07866 KLC1 Kinesin light chain 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 850.468444824219 2 621.304876 1240.5952 34470.1960401019 1.5888 0.00098714 368840 229.16 368840 229.16 850.468092388499 64.55 0.40905 64.55 64.356 64.765 0 36 13 3 0.983214007018489 0.00166809470357378 0.0452632999281224 1.1961E-14 1 15165 213.77 142.83 5 20252000 18943 31892 18986 31257 23654 18208 22569 26168 34652 18139 17925 30124 19171 31923 23725 18967 23356 26487 33679 17686 1 1 1 1 1 1 1 1 1 1 5766 882 5079 5414 6408 6408 1428 VDSTTCLFPVEEK 13 Phospho (STY) _VDS(ph)TTCLFPVEEK_ VDS(0.787)T(0.207)T(0.006)CLFPVEEK VDS(5.8)T(-5.8)T(-21.33)CLFPVEEK 0 0 1 0 Q06210 Q06210 Q06210 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.678527832031 3 535.56864 1603.68409 37109.9224503365 1.3054 0.00069912 285260 152.78 285260 152.78 688.345801464954 88.172 1.8422 88.172 87.734 89.576 0 228 63 7 0.974931850792314 0.0137036424103873 0.251763428230469 2.7206E-08 1 20520 174.47 142.41 3 324300000 13057 17876 15793 19917 15607 12580 16591 17025 19731 9953.7 12365 16899 15745 20208 15866 13011 16927 17205 19335 9766.6 1 1 1 1 1 1 1 1 1 1 5767 875 5080 5415 6409 6409 1418 VDVEVPDVSLEGPEGK 16 Unmodified _VDVEVPDVSLEGPEGK_ 0 0 0 0 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.724853515625 3 556.949075 1667.8254 37584.4731602806 1.7156 0.00095548 274310 152.78 274310 152.78 709.724413226744 84.909 0.4635 84.909 84.663 85.127 -1.4211E-14 46 15 4 0.984432068176779 0.00498277709267755 0.117982466370805 1.1783E-10 1 19822 188.39 157.66 1 19759000 12724 7227.9 12394 8773.2 4259.8 13821 4275.8 7832.5 9798.8 7872.9 12039 6836.8 12400 8994.8 4808.6 13568 4502.9 8325.9 9434.2 7594.5 1 1 1 1 1 1 1 1 1 1 5768 896 5081 5416 6410 6410 VDVKSPK 7 Phospho (STY) _VDVKS(ph)PK_ VDVKS(1)PK VDVKS(55.75)PK 0 0 1 1 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.975341796875 3 284.812405 851.415384 43782.2046142537 0.97374 0.00027733 804610 229.16 804610 229.16 513.975630618215 47.826 0.82105 47.826 47.571 48.392 0 86 27 5 0.922251914568174 0.00835953028602273 0.127189489181927 0.024167 1 11056 55.754 30.095 1 232160000 111840 32684 113260 32937 5757.9 98675 7765.7 48459 32970 2087.5 105830 30877 112650 34860 12243 95347 8498.5 50617 31462 3087.2 1 1 1 1 1 1 1 1 1 1 5769 896 5082 5417 6411 6411 1477 VEAEAGGSGARTPPLSR 17 Phospho (STY) _VEAEAGGSGART(ph)PPLSR_ VEAEAGGS(0.001)GART(0.999)PPLSR VEAEAGGS(-29.45)GART(29.45)PPLS(-74.42)R 0 0 1 1 Q9Y3Q8 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.330688476563 3 578.943869 1733.80978 37914.7622800724 1.4041 0.00081287 131940 76.387 131940 76.387 655.329018436595 41.026 1.2192 41.026 40.12 41.339 0 131 41 5 0.97831403737273 0.00771315895320739 0.0353110652818807 7.303E-07 1 9309 150.91 125.46 3 159860000 20946 32891 21373 34931 34499 20512 33911 27722 34906 8240.5 19822 31083 21656 35510 34228 21310 34574 27776 34400 8401 1 1 1 1 1 1 1 1 1 1 5770 2269 5083 5418 6412 6412 4849 VEAKEESEESDEDMGFGLFD 20 Oxidation (M),Phospho (STY) _VEAKEES(ph)EESDEDM(ox)GFGLFD_ VEAKEESEESDEDM(1)GFGLFD VEAKEES(0.754)EES(0.246)DEDMGFGLFD VEAKEESEESDEDM(160.67)GFGLFD VEAKEES(4.87)EES(-4.87)DEDMGFGLFD 0 1 1 1 Q8NHW5;P05388 Q8NHW5 Q8NHW5 RPLP0P6;RPLP0 60S acidic ribosomal protein P0-like;60S acidic ribosomal protein P0 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 940.076477050781 3 786.966293 2357.87705 33081.4611193936 2.0885 0.0016436 194130 152.78 194130 152.78 940.0769725999 93.905 0.87006 93.905 93.673 94.543 0 82 29 4 0.973735713388157 0.00258395930653216 0.0772201750446327 1.182E-07 1 21858 160.67 145.08 2 8417800 3408.5 3322.7 3098.2 3645.7 3662.9 3496.7 2908 3750.7 3349.3 37975 3224.1 3140.7 3143 3721.2 3673.5 3586.3 3008.4 4896.7 3286 35845 1 1 1 1 1 1 1 1 1 1 5771 303 5084 5419 6413 6413 27 499 VEEASPGRPSSVDTLLSPTALIDSILR 27 Phospho (STY) _VEEAS(ph)PGRPSSVDTLLSPTALIDSILR_ VEEAS(1)PGRPSSVDTLLSPTALIDSILR VEEAS(46.91)PGRPS(-49.19)S(-46.91)VDT(-65.7)LLS(-112.85)PT(-112.04)ALIDS(-152.3)ILR 0 0 1 1 Q00613 Q00613 Q00613 HSF1 Heat shock factor protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1044.89343261719 3 968.496904 2902.46888 30826.4270654685 1.014 0.00098205 78873 76.388 78874 76.389 1045.21847310319 102.74 0.34874 102.74 102.65 103 -1.4211E-14 38 11 5 0.984677424881164 0.0133756731594748 0.209469831433761 1.5839E-18 2 24215 246.32 222.75 7 92142000 15545 13791 16952 12450 11675 19710 12375 18077 14004 180700 14715 13020 16925 12982 12171 19752 12608 23640 13749 170570 2 2 2 2 2 2 2 2 2 2 5772 826 5085 5420 6414;6415 6414 1326 VEEEKRGSVSR 11 Phospho (STY) _VEEEKRGS(ph)VSR_ VEEEKRGS(0.98)VS(0.02)R VEEEKRGS(16.98)VS(-16.98)R 0 0 1 2 Q08170 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 605.659240722656 3 452.548679 1354.62421 40188.5617281089 1.6528 0.00074795 337590 152.78 337590 152.78 605.324242731304 29.638 0.40594 29.638 29.429 29.835 3.5527E-15 37 13 4 0.945106525608479 0.00740261338871346 0.0562083490222701 0.015353 1 6600 71.567 60.354 2 58325000 15904 17419 16279 15829 32445 15325 33897 23565 20245 3232.4 15051 16446 16571 16342 31979 15493 34060 23415 20554 3589 1 1 1 1 1 1 1 1 1 1 5773 886 5086 5421 6416 6416 1446 VEEEQEADEEDVSEEEAESK 20 Phospho (STY) _VEEEQEADEEDVS(ph)EEEAESK_ VEEEQEADEEDVS(1)EEEAESK VEEEQEADEEDVS(108.97)EEEAES(-108.97)K 0 0 1 0 Q9H3N1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 950.077026367188 3 797.302398 2388.88536 32115.6595870072 1.1964 0.00095389 191620 152.78 191620 152.78 950.411920015707 53.229 1.0759 53.229 52.984 54.06 0 150 37 6 0.987646553301651 0.00233092190762892 0.01060507126006 1.5897E-31 2 12384 299.94 276.54 2 184530000 44690 28096 47381 28324 33024 42379 34442 35564 26324 18293 42298 26543 47382 29295 34373 41800 34769 36489 26318 18048 2 2 2 2 2 2 2 2 2 2 5774 1931 5087 5422 6417;6418 6418 3502 VEEGGRHPSPCQFTIATPK 19 Phospho (STY) _VEEGGRHPS(ph)PCQFTIATPK_ VEEGGRHPS(1)PCQFTIATPK VEEGGRHPS(33.83)PCQFT(-33.83)IAT(-100.4)PK 0 0 1 1 O14686 O14686 O14686 KMT2D Histone-lysine N-methyltransferase 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.339111328125 4 548.505502 2189.9929 37630.5670410902 1.9484 0.0010687 208900 114.58 208900 114.58 663.337050592195 61.471 0.64334 61.471 61.067 61.71 0 60 21 4 0.909266566479203 0.002135444274215 0.0284652631205891 1.2561E-07 1 14432 157.83 123.11 3 17360000 8722.8 11432 9141.2 12714 8681.6 9085.8 7300.6 9465.5 10567 5858.3 8255.6 10806 9172.4 12918 8820.8 9284.9 7587.2 9656.4 10288 5735.3 1 1 1 1 1 1 1 1 1 1 5775 63 5088 5423 6419 6419 106 VEFMDDTSR 9 Unmodified _VEFMDDTSR_ 0 0 0 0 P62857 P62857 P62857 RPS28 40S ribosomal protein S28 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 664.822875976563 2 550.239864 1098.46517 37725.5497281814 2.2301 0.0012271 208240 114.58 208240 114.58 664.821665586231 61.308 0.43996 61.308 61.095 61.535 0 41 14 4 0.801804327726148 0.00171256202560885 0.0504597756780501 1.4874E-05 1 14374 156.62 75.933 1 20941000 24643 27729 24436 26766 21244 27610 23176 27545 32310 6596.7 23317 26189 24582 27555 21783 27649 23748 27831 31493 6849.1 1 1 1 1 1 1 1 1 1 1 5776 772 5089 5424 6420 6420 VEHSPGPPPVDK 12 Phospho (STY) _VEHS(ph)PGPPPVDK_ VEHS(1)PGPPPVDK VEHS(97.77)PGPPPVDK 0 0 1 0 Q9H869 Q9H869 Q9H869 YY1AP1 YY1-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 599.985717773438 3 446.874504 1337.60168 40578.126396169 1.6434 0.0007344 341880 152.78 341880 152.78 599.650354841487 44.052 0.47084 44.052 43.815 44.286 -7.1054E-15 45 15 4 0.912347238534651 0.00348369633109682 0.0568211502969015 0.0013274 1 10103 97.767 75.189 1 21839000 18095 20131 19390 22280 14277 17747 15809 18952 18798 3411.3 17128 19029 19390 22673 14814 18013 16101 19067 18421 3650.8 1 1 1 1 1 1 1 1 1 1 5777 1957 5090 5425 6421 6421 3565 VEKEEAGGGISEEEAAQYDR 20 Unmodified _VEKEEAGGGISEEEAAQYDR_ 0 0 0 1 Q9UBE0 Q9UBE0 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 876.10888671875 3 722.997705 2165.97129 34433.1519421115 1.1076 0.00080082 211310 152.78 211310 152.78 875.773576112795 52.119 0.25463 52.119 52.011 52.266 0 17 8 3 0.939118080915342 0.00170609974826033 0.0105396562431383 3.3691E-23 1 12127 281.29 251.71 1 21947000 20988 22554 20251 19203 23529 22535 24979 23988 22482 8635.1 19857 21287 20477 19975 23702 22473 25289 24266 22288 8686.2 1 1 1 1 1 1 1 1 1 1 5778 2118 5091 5426 6422 6422 VEKEEAGGGISEEEAAQYDR 20 Phospho (STY) _VEKEEAGGGIS(ph)EEEAAQYDR_ VEKEEAGGGIS(1)EEEAAQYDR VEKEEAGGGIS(70.73)EEEAAQY(-70.73)DR 0 0 1 1 Q9UBE0 Q9UBE0 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 902.429443359375 3 749.653148 2245.93762 32584.493225724 2.1418 0.0016056 203790 152.77 203800 152.78 902.427984107896 53.979 0.40686 53.979 53.801 54.207 0 36 13 4 0.977878185590118 0.00146879306912565 0.025774794483279 4.3837E-11 1 12584 178.91 153.5 2 14678000 6384.2 9526 6784.7 9660.3 10057 6617.5 9540.9 9980.6 9411.6 68337 6042.6 8999.7 6847.8 9861.8 10005 6939.7 9733.1 11940 9291.9 64578 1 1 1 1 1 1 1 1 1 1 5779 2118 5091 5427 6423 6423 3816 VELELSMTK 9 Phospho (STY) _VELELS(ph)MTK_ VELELS(0.5)MT(0.5)K VELELS(0)MT(0)K 0 0 1 0 Q5TZA2 Q5TZA2 Q5TZA2 CROCC Rootletin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.426452636719 2 565.264165 1128.51378 35424.1148375034 2.2422 0.0012674 405400 229.16 405410 229.16 794.424221879129 97.736 0.5778 97.736 97.472 98.05 0 41 19 3 0.979499443788788 0.0014657097962935 0.0254503355896807 0.02312 1 22695 62.2 22.179 2 9670100 7163.3 13633 6910.8 12681 9479.8 7485.7 9650.3 10899 15315 21884 6777.4 12873 7005 12995 9476.2 7819.2 9970.1 11459 14871 20859 1 1 1 1 1 1 1 1 1 1 5780 1196 5092 5428 6424 6424 2088;4608 VELEMAIDTLNPNYCRSK 18 2 Phospho (STY) _VELEMAIDT(ph)LNPNY(ph)CRSK_ VELEMAIDT(0.997)LNPNY(0.982)CRS(0.021)K VELEMAIDT(25.37)LNPNY(17.34)CRS(-17.34)K 0 0 2 1 Q9NVU0 Q9NVU0 Q9NVU0 POLR3E DNA-directed RNA polymerase III subunit RPC5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 924.771911621094 3 771.661255 2311.96194 31959.9156570655 2.0972 0.0016183 197980 152.78 197990 152.78 924.770944268168 38.881 0.4165 38.881 38.725 39.141 0 42 13 4 0.984855593326566 0.0024526597460028 0.0347767841431812 0.04383 1 8836 41.136 10.83 3 15694000 6050.6 12890 6281.7 13697 18642 6457.9 20799 15229 15917 5193.4 5726.3 12182 6467.4 13898 18214 6916 20934 15093 15912 5242.7 1 1 1 1 1 1 1 1 1 1 5781 2049 5093 5429 6425 6425 4786;4887 VELSPGPPKPAGR 13 Phospho (STY) _VELS(ph)PGPPKPAGR_ VELS(1)PGPPKPAGR VELS(89.14)PGPPKPAGR 0 0 1 1 Q8IZ73 Q8IZ73 Q8IZ73 RPUSD2 RNA pseudouridylate synthase domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 615.347778320313 3 462.237665 1383.69117 39540.5534587229 0.98255 0.00045417 330510 152.78 330510 152.78 615.013290222787 54.858 0.52227 54.858 54.582 55.104 0 56 17 4 0.982348562720743 0.00574895330509253 0.0627924955916316 0.0043068 1 12774 89.136 75.736 1 64254000 22877 28406 25399 24407 17052 22057 17958 23728 28135 4612.1 21657 26811 25330 25266 17819 22243 18515 23875 27329 4892 1 1 1 1 1 1 1 1 1 1 5782 1441 5094 5430 6426 6426 2674 VEMGTSSQNDVDMSWIPQETLNQINKASPR 30 Oxidation (M),Phospho (STY) _VEMGTSSQNDVDM(ox)SWIPQETLNQINKAS(ph)PR_ VEMGTSSQNDVDM(1)SWIPQETLNQINKASPR VEMGTSSQNDVDMSWIPQET(0.001)LNQINKAS(0.999)PR VEM(-130.66)GTSSQNDVDM(130.66)SWIPQETLNQINKASPR VEMGT(-177.8)S(-172.92)S(-167.4)QNDVDMS(-77.1)WIPQET(-32.47)LNQINKAS(32.47)PR 0 1 1 1 P43307 P43307 P43307 SSR1 Translocon-associated protein subunit alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 983.730102539063 4 868.644364 3470.54835 31151.8608026289 0.86338 0.00074997 131910 114.58 131910 114.58 983.478060300303 88.128 0.74363 88.128 87.764 88.507 0 80 25 4 0.965764948761538 0.00555774002341657 0.0861515570565558 1.3608E-17 1 20536 213.43 196.31 12 24636000 5836 4837.7 7185.4 4266.6 6258.8 6308.9 6649.2 7077.8 5851.4 20671 5527.4 4566.8 7147.1 4448.5 6410.9 6281.2 6727.7 7692.6 5807.4 19628 1 1 1 1 1 1 1 1 1 1 5783 596 5095 5431 6427 6427 77;78 972 VEMGTSSQNDVDMSWIPQETLNQINKASPR 30 Oxidation (M),Phospho (STY) _VEM(ox)GTSSQNDVDMSWIPQETLNQINKAS(ph)PR_ VEM(1)GTSSQNDVDMSWIPQETLNQINKASPR VEMGTSSQNDVDMSWIPQET(0.001)LNQINKAS(0.999)PR VEM(156.64)GTSSQNDVDM(-156.64)SWIPQETLNQINKASPR VEMGT(-198.58)S(-193.67)S(-188.54)QNDVDMS(-76.64)WIPQET(-30.45)LNQINKAS(30.45)PR 0 1 1 1 P43307 P43307 P43307 SSR1 Translocon-associated protein subunit alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 983.730590820313 4 868.644364 3470.54835 31396.0066700211 1.7961 0.0015602 131910 114.58 131910 114.58 983.7274454095 92.254 0.74545 92.254 91.969 92.715 0 104 25 6 0.976210569237201 0.00911734634638967 0.143934095275352 3.3062E-18 1 21493 241.64 218.34 12 49532000 10183 2577 8508.8 5795.3 7625.1 10649 9412.2 9169.1 4772.4 23750 9629.4 2452.8 8656.7 5832 7811 10483 9367.9 9970.3 4905.7 22576 1 1 1 1 1 1 1 1 1 1 5784 596 5095 5431 6428 6428 77;78 972 VEMGTSSQNDVDMSWIPQETLNQINKASPR 30 Phospho (STY) _VEMGTSSQNDVDMSWIPQETLNQINKAS(ph)PR_ VEMGTSSQNDVDMSWIPQET(0.037)LNQINKAS(0.963)PR VEMGT(-233.48)S(-226.83)S(-219.95)QNDVDMS(-88.32)WIPQET(-14.16)LNQINKAS(14.16)PR 0 0 1 1 P43307 P43307 P43307 SSR1 Translocon-associated protein subunit alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.7294921875 4 864.645635 3454.55343 31519.8955914655 1.5772 0.0013637 132520 114.58 132520 114.58 979.728191857486 97.081 1.0358 97.081 96.752 97.788 0 179 35 7 0.988838386555666 0.0192153394920037 0.172489004650759 1.3148E-34 2 22540 296.91 266.54 6 109600000 11560 6125.6 14279 6005.1 12347 12802 13958 12434 4717.4 33453 10949 5786 14202 6282.4 12658 12587 13877 13494 5046.6 31788 2 2 2 2 2 2 2 2 2 2 5785 596 5095 5432 6429;6430 6430 972 VENQENVSNLVIEDTELK 18 Unmodified _VENQENVSNLVIEDTELK_ 0 0 0 0 Q01518 Q01518 Q01518 CAP1 Adenylyl cyclase-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.126159667969 3 691.683058 2072.02734 34413.1078053813 1.9053 0.0013178 220870 152.78 220880 152.78 844.792683562451 87.233 0.47269 87.233 87.028 87.5 0 61 15 5 0.749010174070282 0.00314657537495321 0.033822394041289 2.8036E-07 1 20342 139.46 114.41 1 40120000 12110 10791 13003 12674 13466 12429 13025 15513 12283 95906 11462 10204 13047 12895 13631 12688 13259 18331 12151 90666 1 1 1 1 1 1 1 1 1 1 5786 838 5096 5433 6431 6431 VEPSSQSPGRSPR 13 Phospho (STY) _VEPSSQSPGRS(ph)PR_ VEPSSQS(0.002)PGRS(0.998)PR VEPS(-61.73)S(-54.41)QS(-27.24)PGRS(27.24)PR 0 0 1 1 Q8IUD2 Q8IUD2 Q8IUD2 ERC1 ELKS/Rab6-interacting/CAST family member 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 565.282104492188 3 488.559467 1462.65657 41384.5358557389 1.4825 0.00072429 156350 76.388 156350 76.388 564.947127376838 27.573 0.40026 27.573 27.35 27.751 0 30 13 3 0.889059089796821 0.00433232709511252 0.028366769298219 0.00013892 1 6135 107.98 83.595 4 17913000 6799.2 5086.4 7309 5576.4 8481.3 7480.5 8505.2 7191.3 5270.9 2611.4 6435.7 4807.8 7344.9 5726.3 8534.9 7414.4 8567.9 7303.3 5338 2625.4 1 1 1 1 1 1 1 1 1 1 5787 1408 5097 5434 6432 6432 2566 VEQATKPSFESGR 13 Phospho (STY) _VEQATKPS(ph)FESGR_ VEQATKPS(0.991)FES(0.009)GR VEQAT(-40.66)KPS(20.44)FES(-20.44)GR 0 0 1 1 P38159 P38159 P38159 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.008544921875 3 505.899489 1514.67664 38702.1685602951 1.7074 0.0008638 301990 152.77 301990 152.78 658.674437776582 50.174 0.66787 50.174 49.865 50.533 7.1054E-15 84 22 5 0.997076919298321 0.00608295988985809 0.0440678873635544 5.287E-07 1 11616 145.43 124.67 3 162310000 27002 33348 26773 33376 24169 23289 22206 28524 36981 6584.4 25550 31502 26936 34106 24667 23872 23102 28607 35862 6860.1 1 1 1 1 1 1 1 1 1 1 5788 561 5098 5435 6433 6433 910 VEQEEPISPGSTLPEVK 17 Phospho (STY) _VEQEEPIS(ph)PGSTLPEVK_ VEQEEPIS(1)PGSTLPEVK VEQEEPIS(48.66)PGS(-48.66)T(-67.41)LPEVK 0 0 1 0 Q92608 Q92608 Q92608 DOCK2 Dedicator of cytokinesis protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.41748046875 3 640.306361 1917.89725 34946.6078642101 2.1535 0.0013789 238600 152.78 238600 152.78 793.416203055531 77.882 0.80283 77.882 77.515 78.318 -1.4211E-14 106 27 6 0.970259627224536 0.00334556449759725 0.0413545422060246 3.2471E-07 1 18206 147.35 123.87 3 82035000 13023 6365.3 11544 7665.7 13930 13036 14758 11291 6615.4 11446 12318 6020.5 11740 7877.8 13999 12826 14760 11738 6872.8 11039 1 1 1 1 1 1 1 1 1 1 5789 1605 5099 5436 6434 6434 2953 VEQNSEPCAGSSSESDLQTVFK 22 Phospho (STY) _VEQNSEPCAGSSS(ph)ESDLQTVFK_ VEQNSEPCAGSS(0.012)S(0.988)ES(0.001)DLQTVFK VEQNS(-163.74)EPCAGS(-41.06)S(-19.31)S(19.31)ES(-32.29)DLQT(-97.03)VFK 0 0 1 0 Q8N806 Q8N806 Q8N806 UBR7 Putative E3 ubiquitin-protein ligase UBR7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 979.792724609375 3 827.015869 2478.02578 31583.9914361045 1.6534 0.0013674 184730 152.78 184730 152.78 980.125451421897 78.868 0.86665 78.868 78.551 79.418 0 112 29 6 0.989833731197095 0.00250113227736549 0.0411958070437392 2.8681E-17 1 18464 239.25 219.35 6 41400000 9159.8 6730 9971.8 8384.1 13054 8637.8 13547 11978 6416.6 16111 8670.5 6367 10033 8511.7 13065 8719 13571 12371 6633.7 15448 1 1 1 1 1 1 1 1 1 1 5790 1485 5100 5437 6435 6435 2734 VERPPSPFSMAPQASLPPVPPR 22 Phospho (STY) _VERPPS(ph)PFSMAPQASLPPVPPR_ VERPPS(0.991)PFS(0.009)MAPQASLPPVPPR VERPPS(20.61)PFS(-20.61)MAPQAS(-98.9)LPPVPPR 0 0 1 1 P22681 P22681 P22681 CBL E3 ubiquitin-protein ligase CBL MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.7978515625 3 813.074777 2436.2025 33051.8425273325 1.5116 0.001229 93951 76.389 93952 76.39 889.464883905787 84.552 2.2944 84.552 83.324 85.618 0 233 79 4 0.9850883797263 0.00436872717720854 0.0739710951898247 2.6868E-12 4 19755 204.25 184.54 3 17725000 28570 26489 29513 29176 24117 31848 23788 27046 33263 61737 27038 25039 29597 29836 24796 31860 24489 29175 32419 58758 4 4 4 4 4 4 4 4 4 4 5791 461 5101 5438 6436;6437;6438;6439 6437 757 VERPPSPFSMAPQASLPPVPPR 22 Phospho (STY) _VERPPS(ph)PFSMAPQASLPPVPPR_ VERPPS(0.979)PFS(0.021)MAPQASLPPVPPR VERPPS(16.67)PFS(-16.67)MAPQAS(-96.96)LPPVPPR 0 0 1 1 P22681 P22681 P22681 CBL E3 ubiquitin-protein ligase CBL MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 889.464172363281 3 813.074777 2436.2025 NaN NaN NaN NaN NaN NaN NaN NaN 83.764 1 83.764 83.264 84.264 0 NaN NaN NaN 1.0404E-12 1 19582 178.69 160.39 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5792 461 5101 5438 6440 6440 757 VESGGPGTSAASAR 14 Phospho (STY) _VES(ph)GGPGTSAASAR_ VES(0.955)GGPGT(0.04)S(0.006)AASAR VES(13.82)GGPGT(-13.82)S(-22.28)AAS(-41.58)AR 0 0 1 0 Q9BU76 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.870666503906 2 663.787913 1325.56127 35076.7391050269 1.6387 0.0010878 172610 114.58 172620 114.58 778.365740523927 32.974 0.37403 32.974 32.794 33.168 0 27 12 3 0.93297731326146 0.000727677315467399 0.0227362498820713 0.025905 2 7381 62.69 46.847 4 10077000 34088 19974 36325 18419 22088 33373 23443 26915 23024 8093.8 32264 18860 36276 19247 23274 32718 23787 27492 22735 8244.2 2 2 2 2 2 2 2 2 2 2 5793 1831 5102 5439 6441;6442 6441 3351 VEVTEFEDIK 10 Unmodified _VEVTEFEDIK_ 0 0 0 0 Q01105;P0DME0 Q01105 Q01105 SET;SETSIP Protein SET;Protein SETSIP MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.969970703125 2 604.805894 1207.59723 34741.5076347134 1.9785 0.0011966 378900 229.16 378910 229.16 833.969192704494 83.153 0.58854 83.153 82.823 83.412 0 64 19 5 0.969071760243916 0.00464734922194896 0.0391747384633494 4.457E-09 1 19423 214.83 162.98 1 58035000 35640 55100 35896 50985 45613 35149 50986 47005 55543 24127 33725 52028 36259 52346 45795 36132 51766 47417 54611 23807 1 1 1 1 1 1 1 1 1 1 5794 831 5103 5440 6443 6443 VFGSLER 7 Phospho (STY) _VFGS(ph)LER_ VFGS(1)LER VFGS(73.57)LER 0 0 1 0 Q14680 Q14680 Q14680 MELK Maternal embryonic leucine zipper kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 558.786987304688 2 444.204768 886.394983 41994.8008000498 1.7237 0.00076569 257950 114.58 257950 114.58 558.786213639505 69.27 0.78647 69.27 68.912 69.699 1.4211E-14 61 26 3 0.988693479641151 0.00220541170577434 0.0623553252452579 0.018564 1 16233 73.573 49.451 1 25473000 9242.8 19872 9118.5 19802 5472.7 9166.4 5129.4 12108 22734 4817 8745.6 18772 9143.6 20165 5780.7 9708.6 5719.9 12177 21685 4816 1 1 1 1 1 1 1 1 1 1 5795 1019 5104 5441 6444 6444 1738 VFIDQNLSPGK 11 Phospho (STY) _VFIDQNLS(ph)PGK_ VFIDQNLS(1)PGK VFIDQNLS(102.73)PGK 0 0 1 0 Q14186 Q14186 Q14186 TFDP1 Transcription factor Dp-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 586.321899414063 3 433.211116 1296.61152 40882.3017448178 1.7699 0.00076674 352660 152.78 352660 152.78 585.98639979706 81.377 0.60653 81.377 81.105 81.712 0 57 20 4 0.942334378384459 0.00311124075136518 0.0850754516961809 0.00016966 1 19023 102.73 71.499 1 23644000 9062.7 6974.7 9198 6055.7 5794.5 9483.7 5676.1 6941.4 7935.8 5832.3 8576.1 6583.5 9212.2 6328.9 6081.7 9332.1 5845.4 7237 7734.4 5652.4 1 1 1 1 1 1 1 1 1 1 5796 997 5105 5442 6445 6445 1697 VFLENVIR 8 Unmodified _VFLENVIR_ 0 0 0 0 P62805 P62805 P62805 HIST1H4A Histone H4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 609.875305175781 2 495.292559 988.570566 39748.5210146953 1.268 0.00062804 231340 114.58 231340 114.58 609.874071103745 89.217 0.49516 89.217 88.939 89.434 0 44 16 3 0.991406189496635 0.00206600099372423 0.0816257716566971 0.0045014 1 20775 105.57 63.676 1 15378000 10724 11351 10882 9658.7 9253 11179 10440 11478 10948 7519 10148 10713 10931 10045 9503.4 11155 10584 11728 10781 7345.7 1 1 1 1 1 1 1 1 1 1 5797 769 5106 5443 6446 6446 VFPSVASPQK 10 Phospho (STY) _VFPSVAS(ph)PQK_ VFPSVAS(1)PQK VFPS(-36.02)VAS(36.02)PQK 0 0 1 0 Q9BXL5 Q9BXL5 Q9BXL5 HEMGN Hemogen MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 533.296813964844 3 380.521402 1138.54238 42152.5951545421 1.7663 0.00067213 401490 152.78 401490 152.78 533.296917959083 73.9 1.4109 73.9 73.3 74.711 0 178 48 6 0.989855059331222 0.00593847607103986 0.0796794381624065 7.1329E-05 1 17267 129.04 105.29 2 582650000 5415.1 19758 5643.4 16823 5516.1 6178.1 5099.4 9442.5 19492 2003.4 5124.9 18648 5667.1 17282 5613 6712.5 5604.9 9405.4 18623 2105 1 1 1 1 1 1 1 1 1 1 5798 1864 5107 5444 6447 6447 3398 VFSSSQGVEQVVLGLYIVR 19 Phospho (STY) _VFSS(ph)SQGVEQVVLGLYIVR_ VFS(0.091)S(0.502)S(0.408)QGVEQVVLGLYIVR VFS(-7.44)S(0.9)S(-0.9)QGVEQVVLGLY(-117.92)IVR 0 0 1 0 O95777 O95777 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.096862792969 3 720.7082 2159.10277 34141.4713148744 1.5211 0.0010962 105990 76.386 105990 76.387 797.095681984653 102.73 0.14761 102.73 102.65 102.8 0 9 4 3 0.905376546943731 0.00197048328198307 0.0272716894190306 3.5998E-05 1 24219 119.41 97.191 4 24179000 4313.2 5842.2 4367.2 4750.9 3909.3 4007.6 4655.5 4563.6 4988.5 28380 4081.6 5512.7 4390.2 4932.7 4005.1 4110.6 4712.2 5411.2 4908.1 26829 1 1 1 1 1 1 1 1 1 1 5799 260 5108 5445 6448 6448 434 VFVGEEDPEAESVTLR 16 Unmodified _VFVGEEDPEAESVTLR_ 0 0 0 0 Q86UX7 Q86UX7 Q86UX7 FERMT3 Fermitin family homolog 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 669.348815917969 3 592.959863 1775.85776 38806.4061539947 1.9891 0.0011795 128820 76.387 128830 76.388 669.681081607462 77.268 0.45953 77.268 76.998 77.458 0 32 15 3 0.976159368073666 0.000787106456798061 0.011847073143504 0.003647 1 18150 92.773 72.109 1 9422600 5487.2 6407 6911.9 6806.4 5196.8 5700.9 4796.1 5657.9 7513.5 6654.6 5197.6 6054.8 6856.2 6946.5 5371.9 5775.6 4975.7 5877.4 7298.3 6397 1 1 1 1 1 1 1 1 1 1 5800 1375 5109 5446 6449 6449 VGAEDADGIDMAYR 14 Unmodified _VGAEDADGIDMAYR_ 0 0 0 0 P49588 P49588 P49588 AARS Alanine--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 856.410949707031 2 741.830105 1481.64566 31808.1550895449 1.8704 0.0013875 154460 114.58 154460 114.58 856.411084097938 63.419 0.35255 63.419 63.225 63.578 7.1054E-15 28 11 3 1 0.00100461378317343 0.0108954874093718 0.00043771 1 14901 122.55 85.356 1 11584000 14481 13459 12336 15298 14291 14079 13702 15350 13189 16937 13695 12724 12568 15576 14378 14214 13962 15858 13036 16304 1 1 1 1 1 1 1 1 1 1 5801 642 5110 5447 6450 6450 VGDSTPVSEKPVSAAVDANASESP 24 Phospho (STY) _VGDSTPVSEKPVSAAVDANASES(ph)P_ VGDSTPVSEKPVSAAVDANASES(1)P VGDS(-191.93)T(-186.37)PVS(-174.17)EKPVS(-145.06)AAVDANAS(-40)ES(40)P 0 0 1 1 Q9H8Y8 Q9H8Y8 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 951.805236816406 3 798.695125 2393.06354 32135.1702619819 1.0768 0.00086 191280 152.78 191280 152.78 951.80497055818 65.685 0.68041 65.685 65.399 66.079 0 126 22 7 0.990254761659588 0.0095825254472042 0.12423118415016 1.6944E-18 1 15402 246.4 226.4 6 115810000 6611.1 23319 7386.3 25102 9082.5 6856.4 9442.6 14663 26838 15006 6258.7 22039 7414.4 25372 9138.3 7813.1 10071 14857 25743 14470 1 1 1 1 1 1 1 1 1 1 5802 1964 5111 5448 6451 6451 3576;4771 VGDSTPVSEKPVSAAVDANASESP 24 Phospho (STY) _VGDST(ph)PVSEKPVSAAVDANASESP_ VGDS(0.13)T(0.677)PVS(0.176)EKPVS(0.016)AAVDANASESP VGDS(-7.18)T(5.84)PVS(-5.84)EKPVS(-16.16)AAVDANAS(-65.17)ES(-64.22)P 0 0 1 1 Q9H8Y8 Q9H8Y8 Q9H8Y8 GORASP2 Golgi reassembly-stacking protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 951.807861328125 3 798.695125 2393.06354 31886.4857917896 1.8427 0.0014718 191280 152.78 191280 152.78 951.805465853003 66.271 0.81447 66.271 66.049 66.863 0 80 27 5 0.95865327387253 0.00373862167757521 0.0571936391324792 3.149E-17 1 15587 219.95 206.47 6 29382000 5113.5 10152 4272.1 10052 8853.1 5915.7 10871 8799.2 9710.4 28503 4835.5 9590 4410 10260 8741.1 6204 10937 9573.3 9630.5 27043 1 1 1 1 1 1 1 1 1 1 5803 1964 5111 5448 6452 6452 3576;4771 VGDTEKPEPERSPPNR 16 Phospho (STY) _VGDTEKPEPERS(ph)PPNR_ VGDTEKPEPERS(1)PPNR VGDT(-46.39)EKPEPERS(46.39)PPNR 0 0 1 2 Q9NZ63 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.733581542969 3 629.958066 1886.85237 35538.6602233565 1.5166 0.00095542 242520 152.78 242520 152.78 782.733418661777 36.579 1.1357 36.579 35.88 37.015 0 119 38 4 0.985238914701461 0.00154308005985294 0.0152366486183677 0.00012137 1 8156 117.38 96.934 2 72060000 12393 18355 12538 19886 11354 10498 13181 15120 17725 14705 11727 17348 12605 20174 11622 11027 13454 15431 17297 14196 1 1 1 1 1 1 1 1 1 1 5804 2080 5112 5449 6453 6453 3771 VGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVK 32 Phospho (STY) _VGEDEDGS(ph)DEEVVHNEDIHFEPIVSLPEVEVK_ VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK VGEDEDGS(230.87)DEEVVHNEDIHFEPIVS(-230.87)LPEVEVK 0 0 1 0 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1033.49829101563 4 918.413458 3669.62473 30541.6897577136 1.3038 0.0011974 124760 114.58 124760 114.58 1033.4951149494 99.062 0.66065 99.062 98.632 99.292 0 67 22 4 0.816836257998687 0.00414420514116405 0.128011515468795 6.4781E-27 2 22937 286.79 271.97 2 43674000 6578.5 9581.2 8198.2 10286 7449.9 6164.8 7137.8 10576 8792.7 126020 6231 9055.1 8152.3 10452 7601.5 6655.9 7325.9 14235 8605.6 118910 2 2 2 2 2 2 2 2 2 2 5805 655 5113 5450 6454;6455 6455 1104 VGGSDEEASGIPSR 14 Phospho (STY) _VGGS(ph)DEEASGIPSR_ VGGS(1)DEEASGIPSR VGGS(35.58)DEEAS(-35.58)GIPS(-118.37)R 0 0 1 0 Q9NQ55 Q9NQ55 Q9NQ55 PPAN Suppressor of SWI4 1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 835.385498046875 2 720.80376 1439.59297 34131.9074487854 1.5982 0.001152 158960 114.58 158960 114.58 835.385234653558 45.143 1.726 45.143 44.71 46.436 0 197 58 5 0.991364292934683 0.00258618492964896 0.0261099086052335 6.8182E-23 2 10518 274.89 241.68 3 305560000 59932 65946 57164 66757 44983 57643 44913 57940 65295 15262 56701 62302 57571 68348 46386 58217 46279 58567 63562 15712 2 2 2 2 2 2 2 2 2 2 5806 2001 5114 5451 6456;6457 6457 3633 VGGTSDVEVNEK 12 Unmodified _VGGTSDVEVNEK_ 0 0 0 0 P10809 P10809 P10809 HSPD1 60 kDa heat shock protein, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 846.461608886719 2 617.301507 1232.58846 35451.0233690883 0.77625 0.00047918 371230 229.16 371230 229.16 846.463673441213 47.431 0.25575 47.431 47.373 47.629 7.1054E-15 17 10 2 0.898669021263473 0.000694207257447498 0.00395688500649159 4.0562E-16 1 10976 245.08 184.28 1 34666000 32265 32920 35443 31336 47404 31876 47781 39416 32653 16776 30543 31089 35653 32280 47390 32053 48205 39750 32860 16709 1 1 1 1 1 1 1 1 1 1 5807 357 5115 5452 6458 6458 VGMADANSPPKPLSKPR 17 Phospho (STY) _VGMADANS(ph)PPKPLSKPR_ VGMADANS(0.997)PPKPLS(0.003)KPR VGMADANS(24.93)PPKPLS(-24.93)KPR 0 0 1 2 P26358 P26358 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.857666015625 4 461.982669 1843.90157 40174.1351309691 1.7284 0.00079847 372030 171.87 372030 171.87 634.105261598984 58.807 0.72857 58.807 58.433 59.162 7.1054E-15 72 24 5 0.770612762136415 0.000788591281026424 0.00910487665397706 0.013053 1 13743 66.045 46.206 2 12732000 10748 7722.3 9962.2 8621.3 6869.2 10900 8101.3 6777.4 8759.8 4688 10167 7300.1 10041 8833.8 7171.5 10781 8205.3 7099.3 8615.3 4571.1 1 1 1 1 1 1 1 1 1 1 5808 479 5116 5453 6459 6459 794 VGNESPVQELK 11 Phospho (STY) _VGNES(ph)PVQELK_ VGNES(1)PVQELK VGNES(209.84)PVQELK 0 0 1 0 Q5JSH3 Q5JSH3 Q5JSH3 WDR44 WD repeat-containing protein 44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 869.464050292969 2 640.300125 1278.5857 34041.9989810794 2.2824 0.0014614 357900 229.16 357900 229.16 869.463380128409 62.918 0.58105 62.918 62.644 63.225 0 65 19 4 0.779967677303488 0.00968335606702203 0.149586931805283 6.129E-11 1 14771 209.84 144.69 1 119010000 67774 121870 62120 113370 80123 56114 86702 79866 125820 17638 64111 115070 63110 116000 80376 59133 89011 79722 122490 18456 1 1 1 1 1 1 1 1 1 1 5809 1167 5117 5454 6460 6460 2021 VGPATPSAQVGK 12 Phospho (STY) _VGPAT(ph)PSAQVGK_ VGPAT(0.941)PS(0.059)AQVGK VGPAT(12.02)PS(-12.02)AQVGK 0 0 1 0 Q13428 Q13428 Q13428 TCOF1 Treacle protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 825.456176757813 2 596.292103 1190.56965 36100.6028977349 2.8758 0.0017148 384310 229.16 384320 229.16 825.455528033719 51.131 0.31956 51.131 50.964 51.283 0 25 10 3 0.785034131410977 0.000741768907910485 0.00831562151983746 5.2826E-07 1 11880 152.55 127.62 2 7876000 18818 22949 17112 23894 16232 17112 17248 19537 22262 9640.6 17800 21685 17320 24367 16543 17504 17646 19793 21753 9530 1 1 1 1 1 1 1 1 1 1 5810 953 5118 5455 6461 6461 4537 VGSGQGGSPCWK 12 Phospho (STY) _VGSGQGGS(ph)PCWK_ VGS(0.025)GQGGS(0.975)PCWK VGS(-15.88)GQGGS(15.88)PCWK 0 0 1 0 Q9UMN6 Q9UMN6 Q9UMN6 KMT2B Histone-lysine N-methyltransferase 2B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.42431640625 2 650.26302 1298.51149 31730.5784994923 1.8195 0.0011832 352420 229.16 352420 229.16 879.425872339534 59.873 0.3425 59.873 59.736 60.079 0 25 11 3 0.970823466025839 0.000880742787748183 0.00922071539504344 0.0004261 1 14022 101.04 63.424 2 16002000 20900 17437 20861 18382 15582 20585 15099 18649 19007 9984.6 19776 16477 20942 18852 16121 20529 15500 19082 18589 9833.2 1 1 1 1 1 1 1 1 1 1 5811 2197 5119 5456 6462 6462 3979 VGSLDNVGHLPAGGAVK 17 Phospho (STY) _VGS(ph)LDNVGHLPAGGAVK_ VGS(1)LDNVGHLPAGGAVK VGS(166.01)LDNVGHLPAGGAVK 0 0 1 0 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.390014648438 3 557.613571 1669.81888 37361.876168681 1.8914 0.0010546 273980 152.78 273980 152.78 710.389037531819 71.422 0.80778 71.422 71.087 71.895 0 101 27 5 0.915972051915701 0.00522892751009356 0.107239886645652 1.1348E-07 1 16735 166.01 140.69 1 71560000 9261.3 15063 9401.4 12495 19506 9502.9 21128 13849 13692 9523.9 8764.1 14215 9585.4 12938 19214 9731.2 21225 14010 13825 9288.4 1 1 1 1 1 1 1 1 1 1 5812 491 5120 5457 6463 6463 813 VGSLDNVGHLPAGGAVK 17 Phospho (STY) _VGS(ph)LDNVGHLPAGGAVK_ VGS(1)LDNVGHLPAGGAVK VGS(89.82)LDNVGHLPAGGAVK 0 0 1 0 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.391296386719 3 557.613571 1669.81888 36888.5818860168 1.9876 0.0011083 273980 152.78 273980 152.78 710.38871171571 72.392 0.37699 72.392 72.196 72.573 0 28 12 3 0.846329506568238 0.000897368817558768 0.0112554389690669 0.0043065 1 17006 89.816 70.238 1 14061000 9125.1 10609 8801 11949 11608 8953.4 11539 12602 12081 7489 8633.5 10029 8915 12139 11614 9168 11764 12725 11897 7343.5 1 1 1 1 1 1 1 1 1 1 5813 491 5120 5457 6464 6464 813 VGSLPLEKGSPVTTTK 16 Phospho (STY) _VGSLPLEKGS(ph)PVTTTK_ VGSLPLEKGS(0.985)PVT(0.013)T(0.001)TK VGS(-63.01)LPLEKGS(18.68)PVT(-18.68)T(-29.58)T(-34.38)K 0 0 1 1 Q7Z2K8 Q7Z2K8 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 794.796081542969 3 565.297249 1692.86992 35477.063537666 2.4416 0.0013802 405390 229.16 405390 229.16 794.794489040089 72.847 0.43554 72.847 72.634 73.069 0 42 14 4 0.857782154679124 0.00231286236567616 0.039283208778201 0.00012903 1 17088 101.75 77.706 5 18691000 10701 25090 11936 25120 4981 11895 4465.9 14647 28864 13462 10130 23702 11862 25578 5481.1 12573 5238.7 14991 27446 13015 1 1 1 1 1 1 1 1 1 1 5814 1327 5121 5458 6465 6465 2376 VGSLTPPSSPK 11 2 Phospho (STY) _VGSLT(ph)PPS(ph)SPK_ VGS(0.006)LT(0.994)PPS(0.514)S(0.486)PK VGS(-22.55)LT(22.55)PPS(0.24)S(-0.24)PK 0 0 2 0 Q2M2I8 Q2M2I8 Q2M2I8 AAK1 AP2-associated protein kinase 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 844.428405761719 2 615.264369 1228.51419 NaN NaN NaN NaN NaN NaN NaN NaN 62.025 1 62.025 61.525 62.525 0 NaN NaN NaN 4.3991E-05 1 14561 135.5 107.1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5815 1122 5122 5459 6466 6466 1954;4590 VGSPLDYSLVDLPSTNGQSPGK 22 Phospho (STY) _VGSPLDYSLVDLPSTNGQS(ph)PGK_ VGSPLDYSLVDLPS(0.163)T(0.163)NGQS(0.674)PGK VGS(-52.6)PLDY(-47.61)S(-40.4)LVDLPS(-6.16)T(-6.16)NGQS(6.16)PGK 0 0 1 0 Q96T23 Q96T23 Q96T23 RSF1 Remodeling and spacing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 924.483154296875 3 771.033301 2310.07807 32615.3156809748 1.5445 0.0011909 198140 152.78 198150 152.78 924.478537221691 99.226 0.25853 99.226 99.123 99.382 0 14 8 3 0.808951726188148 0.0010928014859438 0.0217809266588404 0.015721 1 23053 63.115 38.093 6 17907000 7257.8 10413 7637.2 6353.2 8003 7489.1 9978.5 11104 9659.2 57475 6869.1 9813.6 7676.6 6789.3 8127.5 7609.5 10054 12729 9544.3 54376 1 1 1 1 1 1 1 1 1 1 5816 1754 5123 5460 6467 6467 3218 VGSPLTLTDAQTR 13 Phospho (STY) _VGS(ph)PLTLTDAQTR_ VGS(0.998)PLT(0.002)LTDAQTR VGS(26.16)PLT(-26.16)LT(-59.75)DAQT(-132.87)R 0 0 1 0 Q99569 Q99569 Q99569 PKP4 Plakophilin-4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 834.43408203125 2 719.850513 1437.68647 33555.9501631855 1.8084 0.0013018 159170 114.58 159180 114.58 834.433052179777 67.877 0.64895 67.877 67.446 68.095 0 56 21 5 0.993776293424376 0.00127595075193142 0.0284536110187069 5.1703E-11 1 15919 205.37 178.23 4 23184000 11420 15545 12123 15109 6870.3 12311 7631.1 11177 16596 18645 10809 14682 12104 15495 7301.4 12486 7976.8 11817 15995 17815 1 1 1 1 1 1 1 1 1 1 5817 1773 5124 5461 6468 6468 3262 VGSPQPSSSGGEK 13 Phospho (STY) _VGS(ph)PQPSSSGGEK_ VGS(1)PQPSSSGGEK VGS(41.3)PQPS(-41.3)S(-45.35)S(-49.4)GGEK 0 0 1 0 O94761 O94761 O94761 RECQL4 ATP-dependent DNA helicase Q4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 878.443969726563 2 648.777014 1295.53948 33522.951387084 1.4034 0.00091053 353230 229.16 353230 229.17 877.940616466275 36.837 0.41602 36.837 36.628 37.044 0 34 13 3 0.978836452300301 0.000795366949403741 0.00904236224790154 0.00018367 1 8298 114.69 70.075 4 22212000 18860 14545 22992 14587 17379 20845 16522 20696 17691 2848.9 17862 13740 22844 15076 17956 20618 16891 20851 17407 3161.6 1 1 1 1 1 1 1 1 1 1 5818 213 5125 5462 6469 6469 372 VGSSNFR 7 Phospho (STY) _VGS(ph)SNFR_ VGS(0.587)S(0.413)NFR VGS(1.52)S(-1.52)NFR 0 0 1 0 CON__P05787;P05787 CON__P05787 CON__P05787 KRT8 Keratin, type II cytoskeletal 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.2607421875 2 423.678917 845.343282 42515.2787068788 1.0086 0.00042733 270440 114.58 270450 114.58 538.26057022631 42.821 0.872 42.821 42.538 43.41 0 67 29 4 0.89162562648717 0.00633024555916983 0.0662699288350261 0.0020355 1 9776 106.88 106.88 2 112800000 11813 110330 13530 108270 12949 7028.2 10352 44465 119480 3749.6 11184 104210 13513 109670 13241 12040 13651 43264 113260 4559.7 1 1 1 1 1 1 1 1 1 1 + 5819 24 5126 5463 6470 6470 43 VGSTENIK 8 Phospho (STY) _VGS(ph)TENIK_ VGS(0.846)T(0.154)ENIK VGS(7.39)T(-7.39)ENIK 0 0 1 0 P27816 P27816 P27816 MAP4 Microtubule-associated protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.377136230469 2 464.21279 926.411027 37174.8593344821 2.2385 0.0010391 493660 229.16 493660 229.16 693.375450407579 49.9 0.64614 49.9 49.481 50.128 7.1054E-15 44 21 3 0.957954801642097 0.00625859723459171 0.238740232602354 2.7451E-05 1 11589 145.75 101.44 2 67894000 56978 82740 58000 77112 74769 54639 65886 70729 95988 6467.8 53919 78129 58532 79158 74789 55984 68318 70518 93435 7727.2 1 1 1 1 1 1 1 1 1 1 5820 491 5127 5464 6471 6471 810 VGTNYQAVIPECKPESPAR 19 Phospho (STY) _VGTNYQAVIPECKPES(ph)PAR_ VGTNYQAVIPECKPES(1)PAR VGT(-139.28)NY(-143.84)QAVIPECKPES(139.28)PAR 0 0 1 1 Q8IZ40 Q8IZ40 Q8IZ40 RCOR2 REST corepressor 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 885.784912109375 3 732.676683 2195.00822 32622.0436542395 1.5742 0.0011534 208520 152.78 208520 152.78 885.785806847274 66.005 0.45242 66.005 65.748 66.2 -1.4211E-14 47 14 4 0.990004198938531 0.00399230431703886 0.0415645501316915 4.5995E-11 1 15486 187.78 167.34 3 26571000 17942 11053 19192 10415 4938 18646 5176.8 13106 13082 11286 16982 10438 19079 10865 5863.6 18275 5474.5 13701 12572 10930 1 1 1 1 1 1 1 1 1 1 5821 1440 5128 5465 6472 6472 2673 VHGLPTTSPSGMNMAELAQQVVK 23 Phospho (STY) _VHGLPTTS(ph)PSGMNMAELAQQVVK_ VHGLPT(0.026)T(0.296)S(0.656)PS(0.022)GMNMAELAQQVVK VHGLPT(-14.02)T(-3.46)S(3.46)PS(-14.7)GMNMAELAQQVVK 0 0 1 0 P19484 P19484 P19484 TFEB Transcription factor EB MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 978.841552734375 3 825.73057 2474.16988 31993.351835623 1.6325 0.001348 185020 152.78 185020 152.78 978.841391028945 97.97 0.37706 97.97 97.788 98.165 -1.4211E-14 40 12 4 0.916781044804498 0.00444861699116552 0.083710105263871 2.9601E-24 1 22747 256.75 225.79 4 12031000 8839.5 2291 9541 2392.6 2358.4 8928 2405.7 4731.9 3244.7 18581 8367.1 2164.8 9479.1 2555.5 2818.8 8639.7 2469.5 5469 3165.9 17605 1 1 1 1 1 1 1 1 1 1 5822 438 5129 5466 6473 6473 714 VHNDAQSFDYDHDAFLGAEEAK 22 2 Phospho (STY) _VHNDAQS(ph)FDY(ph)DHDAFLGAEEAK_ VHNDAQS(1)FDY(1)DHDAFLGAEEAK VHNDAQS(84.36)FDY(84.36)DHDAFLGAEEAK 0 0 2 0 O43852 O43852 O43852 CALU Calumenin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1033.45251464844 3 880.342295 2638.00506 31100.0723437011 1.8991 0.0016718 173540 152.77 173540 152.77 1033.78262240437 75.017 0.80728 75.017 74.737 75.545 -1.4211E-14 84 27 5 0.970720461173325 0.00353524202781198 0.0198496583387364 0.010086 1 17593 84.365 63.74 1 24648000 1941.6 2926.1 2252.6 2619.8 3214.9 2397.5 2864.3 3774 2658.7 51629 1838.4 2762.5 2261.5 2705.1 3200.6 2527.5 2926.8 5287.9 2632.1 48702 1 1 1 1 1 1 1 1 1 1 5823 132 5130 5467 6474 6474 229;4864 VHNNSPDTSRR 11 Phospho (STY) _VHNNS(ph)PDTSRR_ VHNNS(0.982)PDT(0.009)S(0.009)RR VHNNS(20.28)PDT(-20.28)S(-20.28)RR 0 0 1 1 Q9BRD0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.591430664063 3 454.868523 1361.58374 42969.0076497223 1.4715 0.00066932 167930 76.388 167930 76.388 531.256251530593 20.067 0.3627 20.067 19.927 20.29 0 29 11 4 0.958946147719243 0.0105213638607294 0.0687036185699487 0.025509 1 4558 56.569 32.144 3 2494500 387.69 0 395.69 439.15 404.79 443.81 205.5 910.59 356.2 330.21 366.89 0 397.71 424.18 407.57 451.12 222.88 905.25 345.07 332.01 1 0 1 1 1 1 1 1 1 1 5824 1810 5131 5468 6475 6475 3323 VHRPRSPILEEK 12 Phospho (STY) _VHRPRS(ph)PILEEK_ VHRPRS(1)PILEEK VHRPRS(110.56)PILEEK 0 0 1 2 Q12830 Q12830 Q12830 BPTF Nucleosome-remodeling factor subunit BPTF MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 500.536773681641 4 385.955346 1539.79228 45282.3175937797 0.67181 0.00025929 296880 114.58 296880 114.58 500.536684448829 42.865 0.46102 42.865 42.598 43.059 -7.1054E-15 40 15 4 0.910191561415727 0.000994072807356863 0.01145732859293 0.00011541 1 9816 110.56 57.983 1 19942000 11766 12805 12945 12876 13562 13952 14211 12698 13097 2278.7 11138 12097 12976 13234 13734 13925 14404 12854 12970 2439.6 1 1 1 1 1 1 1 1 1 1 5825 904 5132 5469 6476 6476 1490 VHSPPASLVPR 11 Phospho (STY) _VHS(ph)PPASLVPR_ VHS(1)PPASLVPR VHS(64.06)PPAS(-64.06)LVPR 0 0 1 0 Q9BTE3 Q9BTE3 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 490.267608642578 3 413.8797 1238.61727 44668.4588241725 0.47212 0.0001954 184560 76.388 184570 76.388 490.267326046997 55.01 1.4172 55.01 54.473 55.89 0 126 48 3 0.987516771177677 0.0023896395771926 0.0113568374521222 6.728E-08 1 12817 173.06 141 2 40971000 8981.6 7612.6 8096.1 8296.2 7554.5 8670.3 9324.1 9624.7 7995.9 2238.7 8495.6 7195.3 8199.9 8482.6 7722.1 8690.2 9369.7 9684.7 7945.9 2330.7 1 1 1 1 1 1 1 1 1 1 5826 1823 5133 5470 6477 6477 3340 VHVQFFDDSPTR 12 Phospho (STY) _VHVQFFDDS(ph)PTR_ VHVQFFDDS(0.991)PT(0.009)R VHVQFFDDS(20.46)PT(-20.46)R 0 0 1 0 P52701 P52701 P52701 MSH6 DNA mismatch repair protein Msh6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 586.279846191406 3 509.892446 1526.65551 41326.8052478324 1.9465 0.00099252 149810 76.387 149810 76.388 586.279512987677 74.053 1.0083 74.053 73.674 74.682 0 112 34 5 0.834045780865215 0.00229140687834752 0.0286919363256358 2.536E-07 1 17352 152.48 141.87 2 35861000 5351.1 6726.9 5218.2 7164.5 5114.8 4548 4726 5834.4 6149.7 6662.8 5063 6357.2 5260.1 7287.6 5192.5 4704.1 4868.4 6003.2 6007.5 6408.9 1 1 1 1 1 1 1 1 1 1 5827 695 5134 5471 6478 6478 1168 VHVQFFDDSPTR 12 Phospho (STY) _VHVQFFDDS(ph)PTR_ VHVQFFDDS(0.825)PT(0.175)R VHVQFFDDS(6.72)PT(-6.72)R 0 0 1 0 P52701 P52701 P52701 MSH6 DNA mismatch repair protein Msh6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 879.416748046875 2 764.33503 1526.65551 32761.0178672739 2.2306 0.0017049 149910 114.58 149910 114.58 878.919301458515 74.041 1.1259 74.041 73.556 74.682 0 80 38 3 0.953259447526356 0.000983407443697519 0.021638490462652 0.020151 1 17354 65.043 44.141 2 20409000 4950.9 6052 4745.2 7237.4 5027.3 3916.2 6066.6 6528.9 6602.1 32172 4684.1 5723.8 4795.4 7305.4 5100.2 4166.9 6140 7417.2 6491.6 30445 1 1 1 1 1 1 1 1 1 1 5828 695 5134 5471 6479 6479 1168 VIAINVDDPDAANYNDINDVK 21 Unmodified _VIAINVDDPDAANYNDINDVK_ 0 0 0 0 Q15181 Q15181 Q15181 PPA1 Inorganic pyrophosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 916.486511230469 3 763.372883 2287.09682 33529.4121738029 1.4357 0.001096 200130 152.78 200130 152.78 916.148013846148 86.63 0.45376 86.63 86.335 86.789 0 46 15 4 0.979430340302395 0.00198889116885321 0.0456378563136821 1.0842E-11 1 20206 200.99 184.87 1 16684000 8384.4 12428 6595.4 13446 8670.9 8004.8 8971.6 10131 14573 26231 7927.1 11746 6770 13657 8686.2 8342.5 9271.2 10870 14141 24934 1 1 1 1 1 1 1 1 1 1 5829 1063 5135 5472 6480 6480 VIAINVDDPDAANYNDINDVKR 22 Unmodified _VIAINVDDPDAANYNDINDVKR_ 0 0 0 1 Q15181 Q15181 Q15181 PPA1 Inorganic pyrophosphatase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 968.856994628906 3 815.406587 2443.19793 32335.9321443138 1.752 0.0014286 187360 152.78 187360 152.78 968.516718636479 78.547 0.54358 78.547 78.205 78.749 0 45 18 4 0.979684118069762 0.0023768680810078 0.043668100410257 3.4444E-05 1 18398 127.1 108.32 1 16679000 6882.6 9106.8 6768.6 10012 6420.6 6300 7705.1 8187.6 10590 19470 6512.3 8608 6820.3 10165 6557.1 6540.8 7860.5 8726.3 10327 18523 1 1 1 1 1 1 1 1 1 1 5830 1063 5136 5473 6481 6481 VIPSPFK 7 Phospho (STY) _VIPS(ph)PFK_ VIPS(1)PFK VIPS(71.61)PFK 0 0 1 0 P34897 P34897 P34897 SHMT2 Serine hydroxymethyltransferase, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 663.385620117188 2 434.222429 866.430306 38848.1653885275 2.4507 0.0010641 527750 229.16 527760 229.16 663.385196108629 83.875 0.71831 83.875 83.498 84.216 0 66 24 4 0.916668917592648 0.00203643959588786 0.0633508435290624 0.019705 1 19567 71.614 32.466 1 18893000 20126 24483 18762 21012 10679 19367 10569 17236 23310 7960.5 19039 23108 18872 21760 11325 19474 11113 17611 22459 7894.7 1 1 1 1 1 1 1 1 1 1 5831 538 5137 5474 6482 6482 872 VIQLMPSPIMHPLILNPR 18 Phospho (STY) _VIQLMPS(ph)PIMHPLILNPR_ VIQLMPS(1)PIMHPLILNPR VIQLMPS(50.54)PIMHPLILNPR 0 0 1 0 P41212 P41212 P41212 ETV6 Transcription factor ETV6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 793.775634765625 3 717.052368 2148.13527 36665.4959343212 1.4251 0.0010219 106530 76.388 106530 76.389 793.774103121355 101.05 0.17661 101.05 100.95 101.13 0 14 5 4 1 0.000782711560464305 0.0237557512724114 0.034578 1 23718 50.539 32.622 1 20328000 6508.8 5662.9 6935.6 4695.9 6179.8 7130.3 7850.4 7133.2 4691.3 29599 6160.6 5344.1 6953.1 4919.7 6336.5 7094.2 7824.3 8046.8 4762.8 28036 1 1 1 1 1 1 1 1 1 1 5832 577 5138 5475 6483 6483 927 VIQPMGMSPR 10 Phospho (STY) _VIQPMGMS(ph)PR_ VIQPMGMS(1)PR VIQPMGMS(137.4)PR 0 0 1 0 Q9NPQ8 Q9NPQ8 Q9NPQ8 RIC8A Synembryn-A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.855041503906 2 598.271802 1194.52905 37480.8867104992 2.3814 0.0014247 191520 114.58 191520 114.58 712.853179338439 68.1 0.56172 68.1 67.855 68.417 1.4211E-14 49 18 3 0.889070791670356 0.00296124361522516 0.204720546845157 1.9418E-05 1 15980 137.4 109.22 1 27602000 18378 24507 18677 22415 15561 19229 15056 21190 25690 10844 17391 23139 18750 23091 15978 19462 15641 21506 24897 10702 1 1 1 1 1 1 1 1 1 1 5833 1999 5139 5476 6484 6484 3629 VISRPPPSVSPPK 13 Phospho (STY) _VISRPPPSVS(ph)PPK_ VISRPPPS(0.013)VS(0.987)PPK VIS(-47.63)RPPPS(-18.96)VS(18.96)PPK 0 0 1 1 Q8NHM5 Q8NHM5 Q8NHM5 KDM2B Lysine-specific demethylase 2B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 633.70166015625 3 480.925198 1439.75377 38829.9511691228 1.9057 0.00091652 317670 152.78 317670 152.78 633.700435641223 56.734 1.9844 56.734 55.89 57.875 0 206 67 5 0.881589043971683 0.00446661864810196 0.0739769178746084 0.0037925 2 13158 90.654 60.216 3 66674000 35865 35667 35007 37229 32120 33620 33444 37262 35612 18245 33934 33702 35267 38072 32786 33940 34039 37786 35046 18043 2 2 2 2 2 2 2 2 2 2 5834 1527 5140 5477 6485;6486 6485 2806 VKAQTPPGPSLSGSK 15 Phospho (STY) _VKAQT(ph)PPGPSLSGSK_ VKAQT(1)PPGPSLSGSK VKAQT(39.46)PPGPS(-39.46)LS(-61.11)GS(-78.53)K 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.091613769531 3 511.927267 1532.75997 36370.2354152551 2.7572 0.0014115 447650 229.16 447650 229.16 741.090356339346 53.76 1.0006 53.76 53.118 54.119 0 86 33 3 0.945576556645735 0.00544349958374181 0.0568627780741693 8.3512E-05 1 12500 131.56 115.62 4 109800000 41642 29297 44920 29426 48753 45230 54625 46821 31121 9612.8 39416 27676 45102 30460 49309 44669 54678 47193 31704 10135 1 1 1 1 1 1 1 1 1 1 5835 2226 5141 5478 6487 6487 4033;4819 VKAQTPPGPSLSGSKSPCPQEK 22 2 Phospho (STY) _VKAQT(ph)PPGPSLSGSKS(ph)PCPQEK_ VKAQT(1)PPGPS(0.001)LS(0.031)GS(0.313)KS(0.655)PCPQEK VKAQT(44.63)PPGPS(-27.34)LS(-13.3)GS(-3.2)KS(3.2)PCPQEK 0 0 2 2 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.1943359375 4 610.779937 2439.09064 34919.0034923937 1.6132 0.00098528 375200 229.16 375200 229.16 840.193539766134 55.843 0.83008 55.843 55.449 56.279 0 87 27 5 0.950412312969963 0.001569044391028 0.011663032395025 0.001052 1 13065 98.636 87.633 10 43666000 17579 23149 18467 20247 8978.1 20427 9763.4 15996 24641 15081 16637 21851 18430 20969 9696.5 20440 10308 16671 23682 14570 1 1 1 1 1 1 1 1 1 1 5836 2226 5142 5479 6488 6488 4033;4034;4819 VKDSSPGEK 9 Phospho (STY) _VKDSS(ph)PGEK_ VKDS(0.032)S(0.968)PGEK VKDS(-14.78)S(14.78)PGEK 0 0 1 1 Q99590 Q99590 Q99590 SCAF11 Protein SCAF11 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 571.984924316406 3 342.821628 1025.44306 40691.815513623 2.0058 0.00068764 668460 229.16 668460 229.16 571.984552817441 37.708 0.78891 37.708 37.508 38.297 0 88 26 5 0.621206420727536 0.00618456691158372 0.0447389586915854 0.0057381 1 8523 83.243 61.012 2 65966000 72807 57797 71068 56455 41877 67889 46772 58875 59733 9727.5 68888 54591 71313 58232 44302 67444 47729 59698 58388 10522 1 1 1 1 1 1 1 1 1 1 5837 1774 5143 5480 6489 6489 3274 VKESSIIAPAPAEDVDTPPR 20 Phospho (STY) _VKESSIIAPAPAEDVDT(ph)PPR_ VKESSIIAPAPAEDVDT(1)PPR VKES(-109.47)S(-104)IIAPAPAEDVDT(104)PPR 0 0 1 1 Q15910 Q15910 Q15910 EZH2 Histone-lysine N-methyltransferase EZH2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 877.468322753906 3 724.690986 2171.05113 33688.8152826626 1.8123 0.0013134 210820 152.78 210820 152.78 877.80155151917 66.164 0.62369 66.164 65.836 66.46 0 59 20 4 0.982944459450858 0.00228583369062893 0.0456522476950501 3.4418E-08 1 15528 172.95 159.5 3 17904000 8408.5 7179.6 8579.2 8646.1 7712.2 7732.7 8701.1 8141 8475.4 13137 7957.3 6790.7 8620.2 8773.3 7891.4 7821.5 8803.3 8546 8372.2 12558 1 1 1 1 1 1 1 1 1 1 5838 1098 5144 5481 6490 6490 4580 VKLNFDMTASPK 12 Phospho (STY) _VKLNFDMTAS(ph)PK_ VKLNFDMT(0.052)AS(0.948)PK VKLNFDMT(-12.59)AS(12.59)PK 0 0 1 1 Q9ULU4 Q9ULU4 Q9ULU4 ZMYND8 Protein kinase C-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 707.059997558594 3 477.563161 1429.66765 38212.6651703369 2.0516 0.00097979 479860 229.16 479860 229.16 706.726649333044 81.274 0.86783 81.274 80.928 81.795 0 75 27 4 0.836212504605363 0.00265242290300726 0.0512564816777223 0.0059812 1 19005 83.37 56.896 2 15750000 7764.5 10429 7530.2 10316 9583.3 7314.7 9390.1 9017.8 10165 61241 7346.3 9851.4 7620.7 10551 9601.9 7602.5 9588.8 10825 9996.9 57875 1 1 1 1 1 1 1 1 1 1 5839 2190 5145 5482 6491 6491 3964 VKPASPVAQPK 11 Phospho (STY) _VKPAS(ph)PVAQPK_ VKPAS(1)PVAQPK VKPAS(128.44)PVAQPK 0 0 1 1 Q96EV2 Q96EV2 Q96EV2 RBM33 RNA-binding protein 33 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.379577636719 3 401.216201 1200.62677 39473.694242071 1.4444 0.00057954 571170 229.16 571170 229.16 630.379265270303 46.531 0.51193 46.531 46.287 46.799 0 70 17 5 0.974322906175072 0.0204761223899943 0.095102538107075 4.8411E-05 1 10737 128.44 99.111 1 246030000 82320 103230 78273 94244 86551 76864 89494 97011 114890 15862 77881 97469 79156 97037 87409 78103 91651 97006 112290 17181 1 1 1 1 1 1 1 1 1 1 5840 1674 5146 5483 6492 6492 3081 VKPETPPR 8 Phospho (STY) _VKPET(ph)PPR_ VKPET(1)PPR VKPET(90.91)PPR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 487.946014404297 3 335.170592 1002.48995 44069.9204348376 1.5564 0.00052165 455810 152.78 455810 152.78 487.945824302726 38.284 1.2287 38.284 37.44 38.668 0 134 42 4 0.970014046808994 0.00311651120963519 0.0434606929566846 0.011245 1 8557 90.913 65.476 1 223200000 27110 24956 27255 26724 16013 26142 19857 24073 25353 2268.3 25654 23585 27305 27322 16973 26208 20178 24295 24782 2693 1 1 1 1 1 1 1 1 1 1 5841 2226 5147 5484 6493 6493 4839 VKPETPPR 8 Phospho (STY) _VKPET(ph)PPR_ VKPET(1)PPR VKPET(54.27)PPR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 731.417053222656 2 502.25225 1002.48995 36980.328858411 2.5962 0.001304 456270 229.16 456270 229.16 731.415111720717 38.298 1.0433 38.298 37.538 38.581 0 93 35 4 0.626290974260789 0.000635103221317679 0.0164481125211992 0.047613 1 8566 54.267 34.79 1 73151000 24792 17938 27032 17167 15966 25121 14395 20142 18090 4643.6 23468 16941 26952 17802 16837 24772 14829 20537 17693 4838.7 1 1 1 1 1 1 1 1 1 1 5842 2226 5147 5484 6494 6494 4839 VKQDSESPK 9 Phospho (STY) _VKQDSES(ph)PK_ VKQDS(0.188)ES(0.812)PK VKQDS(-6.34)ES(6.34)PK 0 0 1 1 Q2TB10 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 595.663757324219 3 366.500666 1096.48017 39683.8584349018 1.8888 0.00069223 625270 229.16 625270 229.16 595.662684418305 36.135 0.4916 36.135 35.908 36.4 0 36 16 3 0.631688864808795 0.000890942945002068 0.00904781158074825 0.025866 1 8157 52.5 30.943 2 13667000 16024 14892 16735 15777 11082 18291 10610 13902 15908 4473.6 15165 14073 16740 16186 11578 18175 10968 14250 15472 4534.2 1 1 1 1 1 1 1 1 1 1 5843 1123 5148 5485 6495 6495 1957 VKSGTPPR 8 Phospho (STY) _VKSGT(ph)PPR_ VKS(0.048)GT(0.952)PPR VKS(-12.94)GT(12.94)PPR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 460.599243164063 3 307.823304 920.448081 45306.9478920379 0.32009 9.8531E-05 496310 152.78 496310 152.78 460.59891724469 32.111 0.79645 32.111 31.674 32.471 0 63 26 3 0.793881286965068 0.00620763286543378 0.252760344833429 0.012717 1 7159 89.171 73.017 2 39638000 33999 31742 33990 30289 22261 32278 24426 30248 34333 4899.2 32171 29977 34087 31220 23323 32249 25031 30567 33456 5313.2 1 1 1 1 1 1 1 1 1 1 5844 2226 5149 5486 6496 6496 4829 VKSPQRPSDWSK 12 Phospho (STY) _VKS(ph)PQRPSDWSK_ VKS(0.999)PQRPS(0.001)DWSK VKS(29.34)PQRPS(-29.34)DWS(-50.07)K 0 0 1 2 Q5UIP0 Q5UIP0 Q5UIP0 RIF1 Telomere-associated protein RIF1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 728.4052734375 3 498.908207 1493.70279 37019.9617341324 2.7512 0.0013726 459330 229.16 459330 229.16 728.070567298674 49.655 1.0125 49.655 48.969 49.982 -7.1054E-15 119 34 5 0.950184679726652 0.00666883020992074 0.034920594201761 0.0064051 1 11511 89.661 60.333 3 51074000 39633 48151 34749 51004 25948 34539 27519 40158 54998 10254 37485 45502 35167 51931 26900 35444 28689 40373 53101 10585 1 1 1 1 1 1 1 1 1 1 5845 1197 5150 5487 6497 6497 2096 VKSPSPK 7 2 Phospho (STY) _VKS(ph)PS(ph)PK_ VKS(1)PS(1)PK VKS(55.72)PS(55.72)PK 0 0 2 1 O15042 O15042 O15042 U2SURP U2 snRNP-associated SURP motif-containing protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.627136230469 3 301.464326 901.37115 43350.2446027546 1.6018 0.0004829 760170 229.16 760170 229.16 530.627540732346 41.08 1.3358 41.08 40.8 42.136 0 72 46 2 0.90365815983115 0.0035056981320878 0.0464755110536784 0.027753 1 9411 55.718 12.09 1 31688000 17834 24721 17340 24849 22181 16526 20663 22458 25941 5360.5 16874 23354 17545 25373 22208 17021 21250 22458 25372 5567.3 1 1 1 1 1 1 1 1 1 1 5846 77 5151 5488 6498 6498 137;138 VKSPSPK 7 2 Phospho (STY) _VKS(ph)PS(ph)PK_ VKS(1)PS(1)PK VKS(56.4)PS(56.4)PK 0 0 2 1 O15042 O15042 O15042 U2SURP U2 snRNP-associated SURP motif-containing protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 530.626586914063 3 301.464326 901.37115 NaN NaN NaN NaN NaN NaN NaN NaN 42.281 1 42.281 41.781 42.781 0 NaN NaN NaN 0.036738 1 9661 56.404 22.519 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5847 77 5151 5488 6499 6499 137;138 VKSSPLIEK 9 Phospho (STY) _VKSS(ph)PLIEK_ VKS(0.144)S(0.856)PLIEK VKS(-7.73)S(7.73)PLIEK 0 0 1 1 Q6JBY9 Q6JBY9 Q6JBY9 RCSD1 CapZ-interacting protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.025268554688 3 360.861535 1079.56278 40410.5808836934 2.3783 0.00085823 635040 229.16 635050 229.16 590.024380287995 60.236 0.92411 60.236 59.879 60.803 0 115 31 5 0.973622816421697 0.00509275047016433 0.096865319323416 3.6626E-06 1 14069 150.11 110.4 2 384930000 30989 22010 30255 19032 12180 27375 14297 20627 20985 3414.3 29320 20775 30290 19857 13464 26989 14634 21055 20423 3692.4 1 1 1 1 1 1 1 1 1 1 5848 1243 5152 5489 6500 6500 2198;2199 VKVDGPRSPSYGR 13 Phospho (STY) _VKVDGPRS(ph)PSYGR_ VKVDGPRS(0.977)PS(0.023)YGR VKVDGPRS(16.21)PS(-16.21)Y(-41.21)GR 0 0 1 2 Q07955 Q07955 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.021484375 3 499.91184 1496.71369 38574.9815815801 1.6545 0.00082713 305600 152.77 305610 152.78 652.687317004112 39.874 1.3485 39.874 39.452 40.8 0 158 45 6 0.918482392409626 0.00619823091748752 0.0626591796187106 0.016393 1 9004 72.075 57.38 3 1144400000 18117 20599 18362 18762 25780 18976 28474 22079 22156 4740.7 17144 19448 18571 19379 25756 19059 28681 22169 22129 4975 1 1 1 1 1 1 1 1 1 1 5849 884 5153 5490 6501 6501 1436;1437 VKVDGPRSPSYGR 13 2 Phospho (STY) _VKVDGPRS(ph)PS(ph)YGR_ VKVDGPRS(0.999)PS(0.938)Y(0.063)GR VKVDGPRS(31.69)PS(11.79)Y(-11.79)GR 0 0 2 2 Q07955 Q07955 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1018.51159667969 2 789.347287 1576.68002 31596.499566301 1.5653 0.0012356 290320 229.16 290320 229.16 1018.51007565543 42.803 1.1588 42.803 42.223 43.382 0 91 39 3 0.962782946508575 0.000477482407492917 0.00583832051507728 0.0027157 1 9788 93.424 66.089 3 13317000 9439 9431.8 10249 9011.7 8703.1 10163 9580.3 9147.9 10669 3381.7 8934.8 8907.5 10256 9297.1 8936.7 10129 9739.6 9317.3 10481 3396 1 1 1 1 1 1 1 1 1 1 5850 884 5153 5491 6502 6502 1436;1437 VKVDGPRSPSYGR 13 2 Phospho (STY) _VKVDGPRS(ph)PS(ph)YGR_ VKVDGPRS(0.997)PS(0.984)Y(0.019)GR VKVDGPRS(25.27)PS(17.8)Y(-17.8)GR 0 0 2 2 Q07955 Q07955 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.3427734375 3 526.567284 1576.68002 37626.3233058223 1.6742 0.0008816 290130 152.78 290140 152.78 679.342468035563 42.766 3.5812 42.766 41.77 45.351 0 469 123 6 0.934358726770254 0.00343363855273635 0.00875570252750515 0.012964 1 9998 70.615 56.783 3 367830000 41492 44597 39977 39959 40260 48144 45315 44311 46555 6649.4 39257 42103 40355 41443 40912 47857 45918 44796 45884 7286.7 1 1 1 1 1 1 1 1 1 1 5851 884 5153 5491 6503 6503 1436;1437 VKVDGPRSPSYGR 13 2 Phospho (STY) _VKVDGPRS(ph)PS(ph)YGR_ VKVDGPRS(0.998)PS(0.989)Y(0.013)GR VKVDGPRS(26.9)PS(19.5)Y(-19.5)GR 0 0 2 2 Q07955 Q07955 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 679.340148925781 3 526.567284 1576.68002 37687.9452544938 1.5393 0.00081056 290130 152.77 290140 152.78 679.676504984942 45.484 1.998 45.484 45.18 47.178 7.1054E-15 157 68 3 0.76151883660744 0.000426312026956929 0.00184192689197448 0.055698 1 10463 41.513 26.092 3 44788000 14237 13223 13024 12293 17221 13419 17052 14681 12898 7407.4 13467 12486 13235 12697 17222 13430 17252 14900 12903 7314.7 1 1 1 1 1 1 1 1 1 1 5852 884 5153 5491 6504 6504 1436;1437 VLAGETLSVNDPPDVLDR 18 Unmodified _VLAGETLSVNDPPDVLDR_ 0 0 0 0 Q12906 Q12906 Q12906 ILF3 Interleukin enhancer-binding factor 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.722534179688 3 637.3337 1908.97927 37133.0793966899 1.488 0.00094834 119860 76.388 119860 76.389 714.055845251655 85.556 0.74465 85.556 85.185 85.929 1.4211E-14 93 25 6 0.991558160879072 0.0040183775378885 0.0278490242739814 4.2666E-08 1 19942 170.47 149.82 1 54273000 4190.3 3593.1 5611.7 4137.5 4635 5242.9 4786 4094.9 4077.6 5937 3970.4 3397.3 5557.2 4232.8 4762.8 5202.7 4845.1 4330.8 4053.5 5685.2 1 1 1 1 1 1 1 1 1 1 5853 912 5154 5492 6505 6505 VLDEEGSER 9 Phospho (STY) _VLDEEGS(ph)ER_ VLDEEGS(1)ER VLDEEGS(195.8)ER 0 0 1 0 O43719 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.809204101563 2 557.226626 1112.4387 38220.2308482773 1.5997 0.00089142 205630 114.58 205630 114.58 671.808276009058 45.221 1.2503 45.221 44.859 46.109 0 99 42 4 0.948286362144415 0.00571241137142725 0.180985455480568 2.6453E-09 1 10375 195.8 134.15 1 104040000 38938 41023 35017 40121 32375 40931 31620 39326 43586 7208.8 36830 38748 35452 41263 33011 40985 32550 39727 42499 7698.1 1 1 1 1 1 1 1 1 1 1 5854 124 5155 5493 6506 6506 214 VLDNYLTSPLPEEVDETSAEDEGVSQR 27 Unmodified _VLDNYLTSPLPEEVDETSAEDEGVSQR_ 0 0 0 0 O00299 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1074.85876464844 3 998.135038 2991.38328 29824.8010722653 1.6718 0.0016687 76530 76.387 76532 76.389 1074.85691967327 93.511 0.84748 93.511 93.149 93.997 0 146 28 7 0.997553347335371 0.0168112397893485 0.411699338824651 3.7044E-18 2 21724 241.69 228.9 1 420060000 5977.5 9775 6253.7 9974.4 5458.3 6548.7 4954.5 9859.9 11400 46571 5657.3 9235.2 6270.6 10174 5585.1 6846.2 5244 11165 10975 44081 2 2 2 2 2 2 2 2 2 2 5855 41 5156 5494 6507;6508 6507 VLDTSSLTQSAPASPTNK 18 Phospho (STY) _VLDTSSLTQSAPAS(ph)PTNK_ VLDTSSLTQS(0.001)APAS(0.992)PT(0.008)NK VLDT(-67.11)S(-67.76)S(-60.35)LT(-45.47)QS(-32.48)APAS(21)PT(-21)NK 0 0 1 0 Q8N122 Q8N122 Q8N122 RPTOR Regulatory-associated protein of mTOR MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 786.080200195313 3 632.969861 1895.88775 35224.1932894395 1.696 0.0010735 241360 152.78 241360 152.78 786.079846653389 70.775 0.55551 70.775 70.476 71.032 0 75 18 5 0.943984767948486 0.00519600917940347 0.0263612865281232 9.6189E-06 1 16573 133.65 111.49 7 107920000 10744 13896 11038 14409 14912 11331 17288 14274 17655 42190 10168 13130 11150 14714 14938 11611 17494 15475 17405 40058 1 1 1 1 1 1 1 1 1 1 5856 1450 5157 5495 6509 6509 2686 VLEDSDLK 8 Unmodified _VLEDSDLK_ 0 0 0 0 P11021 P11021 P11021 HSPA5 78 kDa glucose-regulated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 688.906494140625 2 459.742565 917.470577 39042.0026197625 2.3359 0.0010739 498460 229.16 498460 229.16 688.905080094482 64.897 0.37193 64.897 64.711 65.082 0 23 12 2 0.86442110874636 0.000641174509222248 0.0125537647779673 0.045672 1 15247 78.334 24.177 1 8699300 16764 16920 17061 16284 24460 15488 22905 18872 15326 7007.6 15864 15980 17250 16746 24356 15616 23183 19010 15444 7035.2 1 1 1 1 1 1 1 1 1 1 5857 358 5158 5496 6510 6510 VLEEGSVEAR 10 Phospho (STY) _VLEEGS(ph)VEAR_ VLEEGS(1)VEAR VLEEGS(115.04)VEAR 0 0 1 0 Q96CT7 Q96CT7 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 699.347290039063 2 584.765918 1167.51728 38117.2533263583 1.0344 0.00060488 195940 114.58 195950 114.58 699.347543767359 52.132 0.51453 52.132 51.892 52.406 7.1054E-15 37 17 3 0.900836678785642 0.00119508583759952 0.0142393591857217 0.0002863 1 12122 115.04 74.504 1 27984000 30895 16229 28287 17097 38895 26870 35794 26827 15513 7891.4 29225 15336 28758 17658 38781 26512 36029 27149 16167 8051.5 1 1 1 1 1 1 1 1 1 1 5858 1664 5159 5497 6511 6511 3062 VLEQLEDLDSR 11 Unmodified _VLEQLEDLDSR_ 0 0 0 0 P26358 P26358 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.419189453125 2 658.838256 1315.66196 35166.1534928047 2.2358 0.001473 173910 114.58 173920 114.58 773.419565037438 89.982 0.61573 89.982 89.72 90.336 0 32 20 2 0.792018614382275 0.00129996469582966 0.0592080007147387 2.8285E-06 1 20974 152.67 109.04 1 8284400 10440 8107.8 11099 9058.1 7959 11206 8143.2 10164 9561.3 21051 9881.3 7664.5 11100 9277.1 8266.1 11163 8319.1 10870 9374 20057 1 1 1 1 1 1 1 1 1 1 5859 479 5160 5498 6512 6512 VLGENYTLEDEEDSQICTVGR 21 Unmodified _VLGENYTLEDEEDSQICTVGR_ 0 0 0 0 Q15029 Q15029 Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 886.760986328125 3 809.704193 2426.09075 32265.752768136 1.9791 0.0016025 94342 76.389 94344 76.391 886.42752330276 77.285 0.37175 77.285 77.057 77.428 0 26 12 3 0.832508453578813 0.00214123222766598 0.0563673498117426 0.0053693 1 18130 88.872 73.913 1 10737000 7461 6602.7 7199.3 6638.3 6048.1 6688 5665.7 6279.7 6100.6 17576 7059.1 6237.5 7249.5 6814.6 6200.6 6729.5 5797.4 6844.4 6001 16695 1 1 1 1 1 1 1 1 1 1 5860 1047 5161 5499 6513 6513 VLIEDTDDEANT 12 Unmodified _VLIEDTDDEANT_ 0 0 0 0 Q9UBH6 Q9UBH6 Q9UBH6 XPR1 Xenotropic and polytropic retrovirus receptor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.385192871094 2 667.801536 1333.58852 34904.0433489331 1.553 0.0010371 171580 114.58 171590 114.58 782.385460961534 67.64 0.49973 67.64 67.416 67.916 0 26 16 2 0.96761964269553 0.000795224575788345 0.0433263378578781 5.0226E-07 1 15882 167.33 156.92 1 8069100 9864 9402.9 9730 9375 9913.1 8837.1 9537 10259 10193 16606 9333.4 8882.5 9806.8 9619 10044 8931 9743.9 10736 10030 15874 1 1 1 1 1 1 1 1 1 1 5861 2121 5162 5500 6514 6514 VLIPLEDGPPPPANSPPPQAPAGSSK 26 Phospho (STY) _VLIPLEDGPPPPANS(ph)PPPQAPAGSSK_ VLIPLEDGPPPPANS(1)PPPQAPAGSSK VLIPLEDGPPPPANS(64.25)PPPQAPAGS(-65.25)S(-64.25)K 0 0 1 0 Q7Z6P3 Q7Z6P3 Q7Z6P3 RAB44 Ras-related protein Rab-44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 768.662170410156 4 654.07946 2612.28873 35476.5665448574 2.1925 0.0014341 175180 114.58 175180 114.58 768.912739218806 90.191 0.92788 90.191 89.75 90.677 1.4211E-14 139 31 6 0.708324883026978 0.00706970441455308 0.250616672357113 2.6961E-05 2 20992 127.95 112.95 3 43109000 38360 4595.1 41443 6112.6 23325 37577 26196 26902 7504.5 32896 36310 4349.5 41337 6689.2 24763 36189 26016 28390 8197.5 31598 2 2 2 2 2 2 2 2 2 2 5862 1355 5163 5501 6515;6516 6515 2461 VLIPLEDGPPPPANSPPPQAPAGSSK 26 Phospho (STY) _VLIPLEDGPPPPANS(ph)PPPQAPAGSSK_ VLIPLEDGPPPPANS(1)PPPQAPAGSSK VLIPLEDGPPPPANS(67.54)PPPQAPAGS(-68.38)S(-67.54)K 0 0 1 0 Q7Z6P3 Q7Z6P3 Q7Z6P3 RAB44 Ras-related protein Rab-44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1024.87683105469 3 871.770188 2612.28873 33398.8280923174 2.0673 0.0018022 175250 152.78 175250 152.78 1024.88040601291 90.179 0.54788 90.179 89.927 90.475 0 45 18 3 0.926812540987528 0.0011830568922521 0.045013884054864 1.5914E-07 1 21049 141.09 125.08 3 10763000 5712.9 2073.8 5059.3 2016.1 4494.7 4828.7 5118.5 5699.1 2694.2 43176 5403.4 1958.7 5126.3 2118.8 4601.1 4806.7 5113.9 6983.9 2761.2 40787 1 1 1 1 1 1 1 1 1 1 5863 1355 5163 5501 6517 6517 2461 VLLQASQDENFGNTTPR 17 Phospho (STY) _VLLQAS(ph)QDENFGNTTPR_ VLLQAS(1)QDENFGNTTPR VLLQAS(127.19)QDENFGNT(-127.86)T(-127.19)PR 0 0 1 0 P57740 P57740 P57740 NUP107 Nuclear pore complex protein Nup107 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.027160644531 3 657.305355 1968.89423 35738.417738993 2.1426 0.0014083 116210 76.387 116210 76.388 734.025918072713 75.117 0.48558 75.117 74.945 75.431 0 38 16 3 0.733613288493787 0.00251231588531407 0.0370688798827249 1.6108E-07 1 17639 161.8 141.36 3 14365000 5695.8 5797 6371.5 6606.4 5791.5 6298.2 6724.4 5997.5 6263.3 13425 5392.3 5480.9 6371.6 6728.9 5924.3 6348.3 6787.4 6432.1 6199.6 12780 1 1 1 1 1 1 1 1 1 1 5864 736 5164 5502 6518 6518 1222 VLNNMEIGTSLFDEEGAK 18 Oxidation (M) _VLNNM(ox)EIGTSLFDEEGAK_ VLNNM(1)EIGTSLFDEEGAK VLNNM(168.64)EIGTSLFDEEGAK 0 1 0 0 P00558 P00558 P00558 PGK1 Phosphoglycerate kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.759582519531 3 661.6507 1981.93027 35167.1365146538 2.0782 0.0013751 230900 152.78 230900 152.78 814.760071668895 88.66 0.40297 88.66 88.452 88.855 0 32 13 3 0.616956529786748 0.00189713206126484 0.0839790201556582 4.705E-08 1 20675 168.64 148.82 1 7958000 7653.6 6064.5 7208.4 6390.3 9085.6 6746 12210 9854.6 7845.6 19578 7240.6 5730.8 7312.9 6547.2 9149.3 6821.8 12159 10354 7926.4 18663 1 1 1 1 1 1 1 1 1 1 5865 282 5165 5503 6519 6519 24 VLNNMEIGTSLFDEEGAK 18 Unmodified _VLNNMEIGTSLFDEEGAK_ 0 0 0 0 P00558 P00558 P00558 PGK1 Phosphoglycerate kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.429016113281 3 656.319062 1965.93536 34946.0303805584 1.8581 0.0012195 232770 152.77 232780 152.78 809.427773227883 99.65 0.17054 99.65 99.522 99.693 0 18 5 5 0.994024286679252 0.00187814144247338 0.019307201953291 8.1249E-06 1 23187 134.93 118.05 1 69178000 13946 9121.4 10139 14246 16707 10709 14725 15243 14196 38545 13182 8645.8 10505 14257 16538 11022 15070 16275 14030 36648 1 1 1 1 1 1 1 1 1 1 5866 282 5165 5504 6520 6520 VLNTGSDVEEAVADALK 17 Phospho (STY) _VLNTGS(ph)DVEEAVADALK_ VLNT(0.109)GS(0.891)DVEEAVADALK VLNT(-9.11)GS(9.11)DVEEAVADALK 0 0 1 0 O75122 O75122 O75122 CLASP2 CLIP-associating protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.065979003906 3 604.28719 1809.83974 35409.7614449336 1.0229 0.00061811 252820 152.78 252820 152.78 757.062211936701 101.34 0.25596 101.34 101.27 101.53 0 24 8 4 0.983759977566844 0.00574338153479364 0.0686053275255916 7.964E-09 1 23811 175.33 139.44 2 57873000 6553.2 9909.1 5056.4 9477.8 7712.2 6734.9 8385.8 10068 9225.8 135500 6195.4 9358.3 5211.3 9713.8 7679.9 7170.1 8526.6 14053 9067.4 127820 1 1 1 1 1 1 1 1 1 1 5867 168 5166 5505 6521 6521 293 VLPAQATEYAFAFIQVPQDDDAR 23 Unmodified _VLPAQATEYAFAFIQVPQDDDAR_ 0 0 0 0 Q7KZF4 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 932.483764648438 3 855.758849 2564.25472 33131.8899041278 1.2457 0.001066 89263 76.388 89264 76.389 932.482588592856 101.23 0.2846 101.23 101.16 101.44 0 17 9 4 0.805372332633855 0.00358039840901242 0.0666768327395045 7.5203E-05 1 23772 105.16 87.561 1 66387000 6794 10726 7854.6 8086.7 5811.5 9722.3 6440.9 10324 11974 73831 6432.8 10117 7824.3 8490.5 6032.3 9818.7 6677.6 12557 11580 69759 1 1 1 1 1 1 1 1 1 1 5868 1314 5167 5506 6522 6522 VLPQGPPTPAK 11 Phospho (STY) _VLPQGPPT(ph)PAK_ VLPQGPPT(1)PAK VLPQGPPT(110.77)PAK 0 0 1 0 Q8IWY9 Q8IWY9 Q8IWY9 CDAN1 Codanin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 548.316528320313 3 395.540685 1183.60022 42135.4002699508 1.1869 0.00046948 386240 152.78 386250 152.78 548.315968571524 64.423 0.70239 64.423 64.035 64.738 0 82 23 5 0.911207678595238 0.00324168578499345 0.021422208695339 0.00020758 1 15088 110.77 57.985 1 52263000 9588.5 12482 10316 10072 7519 9049.5 6838.5 9886.5 10384 1547.5 9075.9 11778 10311 10473 7789.2 9129.8 7090.8 9931.1 10096 1685.9 1 1 1 1 1 1 1 1 1 1 5869 1419 5168 5507 6523 6523 4655 VLPSISLSPGPQPPK 15 Phospho (STY) _VLPSIS(ph)LSPGPQPPK_ VLPS(0.007)IS(0.535)LS(0.458)PGPQPPK VLPS(-18.55)IS(0.68)LS(-0.68)PGPQPPK 0 0 1 0 Q99638 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.061645507813 3 532.951413 1595.83241 39132.2317820924 2.1022 0.0011204 286660 152.78 286660 152.78 685.726282192291 92.443 0.45869 92.443 92.142 92.6 0 38 15 3 0.940451735956624 0.00129373723960177 0.0284396289268705 0.0074066 1 21544 81.317 57.518 3 6653400 4192.5 3610.9 3632.9 4359.3 5153.2 4030.5 5143.7 4518.2 4008 14725 3965.1 3415.4 3708.9 4425 5138.5 4088.5 5205.2 4956.8 4002.8 13970 1 1 1 1 1 1 1 1 1 1 5870 1779 5169 5508 6524 6524 3281 VLSAPPK 7 Phospho (STY) _VLS(ph)APPK_ VLS(1)APPK VLS(57.55)APPK 0 0 1 0 Q86YV0 Q86YV0 Q86YV0 RASAL3 RAS protein activator like-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.370849609375 2 396.206779 790.399006 40640.9972808353 2.0176 0.00079937 578390 229.16 578390 229.16 625.369356299942 60.257 1.1279 60.257 59.851 60.979 0 109 38 4 0.52078813712956 0.00100160999573245 0.0371994688800497 0.037209 1 14070 57.55 37.763 1 35231000 27462 12250 23707 11771 21487 26446 24933 19252 13044 5169.8 25972 11570 24067 12351 21973 25773 24888 19746 13375 5313.6 1 1 1 1 1 1 1 1 1 1 5871 1404 5170 5509 6525 6525 2552 VLSGHLLGR 9 Phospho (STY) _VLS(ph)GHLLGR_ VLS(1)GHLLGR VLS(81.09)GHLLGR 0 0 1 0 O00116 O00116 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.854736328125 2 516.273516 1030.53248 39386.19968947 1.4819 0.00076507 221940 114.58 221940 114.58 630.854568961207 68.766 0.79195 68.766 68.472 69.264 0 59 26 3 0.29496500996889 0.00103435083469803 0.020920981097525 0.010769 1 16135 81.09 70.061 1 14485000 7808.5 28032 7128 27351 7960.9 7228.6 6504.8 13795 28284 4736.4 7386.3 26477 7224.1 27801 8029.5 8235 7287.6 13726 26984 4779.2 1 1 1 1 1 1 1 1 1 1 5872 30 5171 5510 6526 6526 52 VLSGHLLGRPR 11 Phospho (STY) _VLS(ph)GHLLGRPR_ VLS(1)GHLLGRPR VLS(101.53)GHLLGRPR 0 0 1 1 O00116 O00116 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.290679931641 3 428.902728 1283.68635 43858.9048129341 0.95947 0.00041152 178100 76.388 178100 76.388 505.290307225533 59.325 0.9776 59.325 59.018 59.995 -7.1054E-15 104 33 5 0.924771803643665 0.0045303743359085 0.109354442281181 0.00017334 1 13865 101.53 73.911 1 80955000 5285.6 20813 5302.6 20288 4574.6 5799 5112.3 10660 20041 2952.6 5001.6 19658 5330.5 20630 4707 6525.8 5586.9 10594 19141 3027 1 1 1 1 1 1 1 1 1 1 5873 30 5172 5511 6527 6527 52 VLSGQDDEEQGLTAQVLDASSLSFNTR 27 Phospho (STY) _VLS(ph)GQDDEEQGLTAQVLDASSLSFNTR_ VLS(1)GQDDEEQGLTAQVLDASSLSFNTR VLS(66.95)GQDDEEQGLT(-66.95)AQVLDAS(-124.43)S(-129.02)LS(-136.4)FNT(-138.78)R 0 0 1 0 Q8WV19 Q8WV19 Q8WV19 SFT2D1 Vesicle transport protein SFT2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1064.51721191406 3 987.455545 2959.3448 29775.3456279579 2.0223 0.0019969 77358 76.387 77360 76.389 1064.17766114806 100.39 0.44579 100.39 100.31 100.76 0 42 15 6 0.938204145290556 0.00124456341894965 0.0435113349298572 1.8537E-07 1 23504 141.23 126.74 6 121920000 3851.3 6259.2 4850.6 4847.5 5869.1 5824.2 5553.3 5823.3 5146.1 77791 3648.1 5904.8 4838.7 5079.1 5891 5940.8 5656.8 8185.2 5094.9 73384 1 1 1 1 1 1 1 1 1 1 5874 1569 5173 5512 6528 6528 2881 VLSGQDTEDR 10 Phospho (STY) _VLS(ph)GQDTEDR_ VLS(0.991)GQDT(0.009)EDR VLS(20.48)GQDT(-20.48)EDR 0 0 1 0 O95562 O95562 O95562 SFT2D2 Vesicle transport protein SFT2B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.833312988281 2 600.250632 1198.48671 37156.7750530932 1.9826 0.00119 190890 114.58 190890 114.58 714.832041752696 41.748 0.5419 41.748 41.512 42.054 0 42 18 3 0.984485297424269 0.00123347080589767 0.0172873218742837 0.0029362 1 9542 96.469 60.023 2 21611000 36214 25211 35199 25891 16646 36630 18890 29045 27415 7762.7 34264 23819 35279 26715 18028 36156 19354 29662 26689 7981.7 1 1 1 1 1 1 1 1 1 1 5875 252 5174 5513 6529 6529 424 VLSLETYPVSSPK 13 Phospho (STY) _VLSLETYPVSS(ph)PK_ VLSLETYPVS(0.14)S(0.86)PK VLS(-90.21)LET(-74.29)Y(-60.98)PVS(-7.89)S(7.89)PK 0 0 1 0 Q9H7F0 Q9H7F0 Q9H7F0 ATP13A3 Probable cation-transporting ATPase 13A3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.695129394531 3 500.584619 1498.73203 40121.2409282424 0.82339 0.00041218 305190 152.78 305200 152.78 653.359826272534 87.964 0.54881 87.964 87.704 88.253 0 39 18 4 0.873589077755839 0.00196948077117076 0.0400761093287483 0.00016595 1 20524 102.38 81.715 5 4961600 3842.1 4906.8 6223 5397 4281.2 4912.2 5116.3 5460.4 4989.4 9894 3644.5 4638.1 6107.2 5503.8 4470.9 4970.9 5164.4 5754 4928.4 9442.7 1 1 1 1 1 1 1 1 1 1 5876 1950 5175 5514 6530 6530 3544 VLSLLSAPLGSGGFTLLHAAAAAGR 25 Phospho (STY) _VLSLLSAPLGS(ph)GGFTLLHAAAAAGR_ VLSLLS(0.003)APLGS(0.993)GGFT(0.004)LLHAAAAAGR VLS(-40.73)LLS(-25.24)APLGS(23.57)GGFT(-23.57)LLHAAAAAGR 0 0 1 0 Q9H8Y5 Q9H8Y5 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 887.82861328125 3 810.768341 2429.28319 34332.6601274104 1.389 0.0011262 94218 76.389 94220 76.39 887.49173451444 102.25 0.14569 102.25 102.16 102.3 0 13 4 4 0.751122072068337 0.00244112398143105 0.0367559989089644 0.011522 1 24090 71.651 56.059 4 13544000 4286.1 3564.8 4052.5 5247.9 3576.8 3538 4880.9 6171.4 4600.3 43141 4054.8 3377.1 4090.7 5258.2 3676 3736.9 4898 7388.2 4551 40765 1 1 1 1 1 1 1 1 1 1 5877 1963 5176 5515 6531 6531 3575 VLSPLIIK 8 Phospho (STY) _VLS(ph)PLIIK_ VLS(1)PLIIK VLS(145.89)PLIIK 0 0 1 0 Q8NCN4 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.951477050781 2 481.787937 961.56132 37923.0468975494 2.1957 0.0010578 475650 229.16 475650 229.16 710.95135755809 99.705 0.28606 99.705 99.55 99.836 1.4211E-14 26 9 4 0.962529439481502 0.00365572815469894 0.0963271103261049 2.7326E-05 1 23188 145.89 89.323 1 57122000 29122 41558 26943 41210 41456 28308 41137 38577 43726 16938 27549 39257 27432 42127 41211 29111 41960 38808 43035 16842 1 1 1 1 1 1 1 1 1 1 5878 1498 5177 5516 6532 6532 2751 VLSPPHIK 8 Phospho (STY) _VLS(ph)PPHIK_ VLS(1)PPHIK VLS(77.38)PPHIK 0 0 1 0 Q9NZ09 Q9NZ09 Q9NZ09 UBAP1 Ubiquitin-associated protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 476.950897216797 3 324.175566 969.504868 45787.8476615756 0.74302 0.00024087 471270 152.78 471270 152.78 476.950853021593 69.788 1.3619 69.788 68.971 70.333 0 122 46 3 0.856504683570575 0.00210496796894706 0.0334141421175014 0.0088334 1 16307 77.379 77.379 1 14425000 10036 5295.5 11570 5383.4 3490 10815 2830.3 6248.3 5895.6 1685.4 9502.7 5003 11462 5609.4 4012.3 10544 2996.6 6495.3 5687.2 1731.6 1 1 1 1 1 1 1 1 1 1 5879 2078 5178 5517 6533 6533 3769 VLSPPKLNEVSSDANR 16 Phospho (STY) _VLS(ph)PPKLNEVSSDANR_ VLS(0.999)PPKLNEVS(0.001)SDANR VLS(30.66)PPKLNEVS(-30.66)S(-34.75)DANR 0 0 1 1 Q9H6Z4 Q9H6Z4 Q9H6Z4 RANBP3 Ran-binding protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.741882324219 3 602.631291 1804.87204 35595.7822612222 1.6822 0.0010137 253510 152.78 253520 152.78 755.74072005168 70.857 1.8248 70.857 69.577 71.401 0 261 62 5 0.994802432285216 0.0257856091655979 0.109123713652038 1.4072E-10 2 16625 179.5 145.82 3 203340000 116070 116610 104270 124140 76108 109780 79185 109580 125390 25725 109780 110200 105330 126770 78984 110730 81721 110700 121760 26760 2 2 2 2 2 2 2 2 2 2 5880 1948 5179 5518 6534;6535 6535 3541 VLSPTAAK 8 Phospho (STY) _VLS(ph)PTAAK_ VLS(0.851)PT(0.149)AAK VLS(7.58)PT(-7.58)AAK 0 0 1 0 Q96QC0 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.886596679688 2 433.722794 865.431034 38707.2708684779 2.2655 0.0009826 528370 229.16 528370 229.17 662.887438917958 59.153 0.48924 59.153 58.876 59.365 0 38 16 3 0.897727440766459 0.00120600850428 0.0583897764423555 0.011993 1 13836 82.417 42.794 2 18855000 20170 21351 19462 24801 16057 21023 19489 21903 21777 7900.1 19083 20190 19603 25194 16547 21267 19736 22174 21391 7945.8 1 1 1 1 1 1 1 1 1 1 5881 1730 5180 5519 6536 6536 3178 VLSPTAAKPSPFEGK 15 Phospho (STY) _VLS(ph)PTAAKPSPFEGK_ VLS(0.941)PT(0.059)AAKPSPFEGK VLS(12.07)PT(-12.07)AAKPS(-70.88)PFEGK 0 0 1 1 Q96QC0 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 766.437561035156 3 536.939285 1607.79602 35762.6583619503 2.7608 0.0014824 426790 229.16 426800 229.16 766.436174571117 75.238 0.76905 75.238 74.859 75.628 0 118 26 6 0.974308541354557 0.0144198003417207 0.0990648436054849 1.7945E-10 1 17618 178.54 157.72 3 295740000 44386 48818 47783 51793 31853 45283 32891 47992 52831 10730 42014 46134 47727 52893 33298 45735 33976 48358 51283 11214 1 1 1 1 1 1 1 1 1 1 5882 1730 5181 5520 6537 6537 3178 VLTANSNPSSPSAAK 15 Phospho (STY) _VLTANSNPSS(ph)PSAAK_ VLTANSNPS(0.003)S(0.973)PS(0.024)AAK VLT(-80.23)ANS(-70.11)NPS(-25.43)S(16.04)PS(-16.04)AAK 0 0 1 0 Q9NV56 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.682922363281 3 508.574894 1522.70285 37633.6517197238 1.4333 0.00072896 300400 152.77 300400 152.78 661.683289483933 54.801 0.86617 54.801 54.207 55.074 0 65 29 4 0.982416031349883 0.00231379775065024 0.0153264351115828 0.00010975 2 12764 114.21 93.649 5 29621000 25975 23685 25981 24468 23289 26402 20221 24294 23597 19355 24579 22378 26122 25106 23753 26387 20823 25034 23140 18787 2 2 2 2 2 2 2 2 2 2 5883 2043 5182 5521 6538;6539 6539 3705 VLTPEEQLADKLR 13 Phospho (STY) _VLT(ph)PEEQLADKLR_ VLT(1)PEEQLADKLR VLT(105.99)PEEQLADKLR 0 0 1 1 O75822 O75822 O75822 EIF3J Eukaryotic translation initiation factor 3 subunit J MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.0517578125 3 531.274556 1590.80184 40624.3396440839 1.4212 0.00075506 287570 152.78 287570 152.78 684.050490020064 85.766 0.45247 85.766 85.562 86.014 0 34 15 3 0.825887239157397 0.00155323087015379 0.0262284653448842 0.00038396 1 20030 105.99 63.198 1 8489200 5360.2 8736.6 5103.7 8815.5 5289.4 6034.6 7169.6 6764.6 9020 7466.5 5071.2 8253.6 5159.7 9002 5385 6196.1 7258.4 6982 8821.6 7187.1 1 1 1 1 1 1 1 1 1 1 5884 204 5183 5522 6540 6540 4346 VMPTKSPPPPGGGNLGMNSR 20 Phospho (STY) _VMPTKS(ph)PPPPGGGNLGMNSR_ VMPT(0.292)KS(0.707)PPPPGGGNLGMNS(0.001)R VMPT(-3.84)KS(3.84)PPPPGGGNLGMNS(-27.59)R 0 0 1 1 Q02078 Q02078 Q02078 MEF2A Myocyte-specific enhancer factor 2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 845.101684570313 3 691.991837 2072.95368 34030.3250084722 1.9465 0.0013469 220770 152.77 220780 152.77 845.099714802721 60.964 0.70584 60.964 60.685 61.391 0 82 23 5 0.77226098443461 0.00184113581616756 0.0253697434753627 0.04987 1 14336 40.819 19.204 3 17394000 14835 13572 14248 13977 17227 14973 16511 18840 14882 15707 14035 12823 14416 14342 17295 15042 16796 19221 14753 15226 1 1 1 1 1 1 1 1 1 1 5885 848 5184 5523 6541 6541 1370 VMSSSNPDLAGTHSAADEEVK 21 Oxidation (M),Phospho (STY) _VM(ox)SSS(ph)NPDLAGTHSAADEEVK_ VM(1)SSSNPDLAGTHSAADEEVK VMS(0.005)S(0.025)S(0.971)NPDLAGTHSAADEEVK VM(240.4)SSSNPDLAGTHSAADEEVK VMS(-23.15)S(-15.96)S(15.96)NPDLAGT(-115.83)HS(-147.86)AADEEVK 0 1 1 0 Q8NF50 Q8NF50 Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 900.758911132813 3 747.65075 2239.93042 33284.1434844774 1.818 0.0013593 204340 152.77 204340 152.78 900.759791887555 49.923 0.5543 49.923 49.658 50.212 0 56 18 4 0.888367948400559 0.00303164394380784 0.053980897791938 7.3827E-17 1 11585 240.4 208.07 5 27350000 21609 11807 23267 11710 17328 26764 21229 19420 12294 7902.6 20454 11153 23268 12271 17982 26078 21177 20002 12509 7890.7 1 1 1 1 1 1 1 1 1 1 5886 1520 5185 5524 6542 6542 178 2794 VMSSSNPDLAGTHSAADEEVK 21 Phospho (STY) _VMSSS(ph)NPDLAGTHSAADEEVK_ VMS(0.001)S(0.028)S(0.971)NPDLAGTHSAADEEVK VMS(-30.64)S(-15.41)S(15.41)NPDLAGT(-104.78)HS(-134.35)AADEEVK 0 0 1 0 Q8NF50 Q8NF50 Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 895.431030273438 3 742.319112 2223.93551 32381.8518214371 1.7983 0.0013349 205810 152.78 205810 152.78 895.428766057563 58.576 0.72663 58.576 58.262 58.988 0 108 24 6 0.989109942968851 0.00481857641670965 0.100475229950571 1.1302E-31 1 13680 296.37 224.78 5 88774000 21610 10533 21848 12056 16164 23078 18622 20236 11433 7096.8 20449 9958.5 21921 12463 16767 22618 18640 20622 11585 7150.9 1 1 1 1 1 1 1 1 1 1 5887 1520 5185 5525 6543 6543 2794 VMTIPYQPMPASSPVICAGGQDR 23 2 Oxidation (M),Phospho (STY) _VM(ox)TIPYQPM(ox)PAS(ph)SPVICAGGQDR_ VM(1)TIPYQPM(1)PASSPVICAGGQDR VMTIPYQPMPAS(0.599)S(0.401)PVICAGGQDR VM(113.92)TIPYQPM(113.92)PASSPVICAGGQDR VMT(-66.87)IPY(-46.04)QPMPAS(1.75)S(-1.75)PVICAGGQDR 0 2 1 0 Q15365 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 939.774353027344 3 863.051203 2586.13178 32195.3150727134 1.6043 0.0013846 88507 76.386 88509 76.388 939.772835749477 70.256 0.57219 70.256 69.904 70.476 0 74 19 6 0.944247448470819 0.00989217109840881 0.165023514834996 5.3669E-05 1 16470 113.92 93.293 4 62743000 5518.8 8780 6538.6 7175.6 7590.1 7008.9 6728.6 7953.7 8235 38069 5226 8285 6536.6 7462.9 7629.6 7116.4 6931.7 9088.7 8061.6 36031 1 1 1 1 1 1 1 1 1 1 5888 1070 5186 5526 6544 6544 140;141 1848;1849 VMTIPYQPMPASSPVICAGGQDR 23 Oxidation (M),Phospho (STY) _VM(ox)TIPYQPMPASS(ph)PVICAGGQDR_ VM(1)TIPYQPMPASSPVICAGGQDR VMTIPYQPMPAS(0.077)S(0.923)PVICAGGQDR VM(60.57)TIPYQPM(-60.57)PASSPVICAGGQDR VMT(-67.9)IPY(-44.7)QPMPAS(-10.82)S(10.82)PVICAGGQDR 0 1 1 0 Q15365 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 934.777099609375 3 857.719565 2570.13687 32374.5235027806 1.9936 0.0017099 89059 76.388 89061 76.389 934.442754665009 77.761 0.52111 77.761 77.515 78.036 0 92 17 7 0.937209795093368 0.00969627184434207 0.129093040928405 7.0596E-05 1 18210 104.83 80.375 8 105130000 3430.1 6881.1 5432.5 6515.2 6126.1 4220 7717.1 6873.7 6966.3 39650 3253.3 6498.2 5366.6 6675 6197.6 4440.3 7758.4 7986.7 6905.5 37494 1 1 1 1 1 1 1 1 1 1 5889 1070 5186 5527 6545 6545 140;141 1848;1849 VMTIPYQPMPASSPVICAGGQDR 23 Oxidation (M),Phospho (STY) _VMTIPYQPM(ox)PAS(ph)SPVICAGGQDR_ VMTIPYQPM(1)PASSPVICAGGQDR VMTIPYQPMPAS(0.593)S(0.407)PVICAGGQDR VM(-89.03)TIPYQPM(89.03)PASSPVICAGGQDR VMT(-94.9)IPY(-67.24)QPMPAS(1.63)S(-1.63)PVICAGGQDR 0 1 1 0 Q15365 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 934.447021484375 3 857.719565 2570.13687 32080.0359263214 2.0081 0.0017224 89059 76.387 89061 76.389 934.441870631741 82.457 0.79799 82.457 81.998 82.796 0 123 27 7 0.94194605342019 0.00240213420792903 0.0243694322918126 5.4651E-08 1 19256 150.48 131.16 8 140120000 4339.4 5961.4 4021.5 4885.2 4498 4346.9 4565.2 4821.6 4912.4 33379 4105 5625.3 4073.7 5073 4537.7 4450 4653.3 5823.7 4832.3 31541 1 1 1 1 1 1 1 1 1 1 5890 1070 5186 5527 6546 6546 140;141 1848;1849 VMTIPYQPMPASSPVICAGGQDR 23 Phospho (STY) _VMTIPYQPMPAS(ph)SPVICAGGQDR_ VMTIPYQPMPAS(0.62)S(0.38)PVICAGGQDR VMT(-99.17)IPY(-71)QPMPAS(2.12)S(-2.12)PVICAGGQDR 0 0 1 0 Q15365 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 929.110534667969 3 852.387927 2554.14195 32572.6056586024 1.9721 0.001681 89615 76.387 89617 76.389 929.109981624854 89.788 0.67033 89.788 89.491 90.161 0 130 22 8 0.91261317100955 0.013005780360094 0.0556021575703597 4.662E-08 1 20899 153.27 125.95 4 317360000 14083 16959 14943 21924 12657 14633 15786 20438 22818 37923 13330 16049 14976 22090 13030 15137 16111 21418 22216 36182 1 1 1 1 1 1 1 1 1 1 5891 1070 5186 5528 6547 6547 1848;1849 VNDAEPGSPEAPQGK 15 Phospho (STY) _VNDAEPGS(ph)PEAPQGK_ VNDAEPGS(1)PEAPQGK VNDAEPGS(220.64)PEAPQGK 0 0 1 0 Q8N8A6 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1017.50262451172 2 788.337967 1574.66138 32175.7697698852 1.3861 0.0010927 290690 229.16 290690 229.16 1017.50146303179 44.492 0.33791 44.492 44.286 44.624 0 30 11 4 0.924729449244015 0.000254051932045663 0.00854892542545285 1.4205E-15 1 10236 220.64 195.51 1 9268200 7365.7 6599.1 7909.9 6595.4 6174.9 8445 6548.6 7295.1 7196.6 2666.3 6971.9 6233.9 7913 6801.9 6374.7 8372.9 6665.7 7442.4 7073.4 2679.5 1 1 1 1 1 1 1 1 1 1 5892 1486 5187 5529 6548 6548 2735 VNDGVCDCCDGTDEYNSGVICENTCK 26 Unmodified _VNDGVCDCCDGTDEYNSGVICENTCK_ 0 0 0 0 P14314 P14314 P14314 PRKCSH Glucosidase 2 subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1167.82653808594 3 1014.38225 3040.12492 29070.0352521768 1.6995 0.001724 150610 152.77 150610 152.78 1167.82559468687 61.002 0.4997 61.002 60.747 61.247 0 85 16 7 0.983138161141415 0.00495212696667546 0.0891073553068197 3.4056E-18 1 14285 242.64 230.21 1 54668000 11293 7878.1 13767 8369.8 10349 11623 12050 11526 10317 6330 10695 7444.9 13682 8616.1 10727 11515 12136 11756 10253 6227.2 1 1 1 1 1 1 1 1 1 1 5893 386 5188 5530 6549 6549 VNEEKDGPISPK 12 Phospho (STY) _VNEEKDGPIS(ph)PK_ VNEEKDGPIS(1)PK VNEEKDGPIS(72.82)PK 0 0 1 1 Q8WWQ0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.047912597656 3 464.885068 1391.63338 NaN NaN NaN NaN NaN NaN NaN NaN 50.697 1 50.697 50.197 51.197 0 NaN NaN NaN 0.03148 1 11786 72.819 39.824 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5894 1577 5189 5531 6550 6550 2902 VNLEESSGVENSPAGARPK 19 Phospho (STY) _VNLEESSGVENS(ph)PAGARPK_ VNLEESSGVENS(1)PAGARPK VNLEES(-53.77)S(-56.96)GVENS(53.77)PAGARPK 0 0 1 1 Q8WVM8 Q8WVM8 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 827.42529296875 3 674.316031 2019.92626 34249.0221147353 1.5395 0.0010381 226560 152.78 226570 152.78 827.09218714026 53.18 0.91835 53.18 53.027 53.945 0 67 31 4 0.889838913499264 0.00295392963414846 0.0117698624642683 1.2722E-07 1 12399 152.88 129.16 3 54932000 31895 51654 33956 46381 31141 34385 30344 42499 51896 10900 30188 48766 34037 47752 31777 35123 31516 42644 50291 11247 1 1 1 1 1 1 1 1 1 1 5895 1571 5190 5532 6551 6551 2883 VNPTVFFDIAVDGEPLGR 18 Unmodified _VNPTVFFDIAVDGEPLGR_ 0 0 0 0 P62937 P62937 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1088.15759277344 2 973.50454 1944.99453 31147.459082373 0.97936 0.00095341 117700 114.58 117700 114.58 1088.08822797455 101.66 0.089874 101.66 101.58 101.67 0 4 2 2 0.490890539504161 0.000253601206092503 0.00934777249621646 1.0185E-06 1 23905 183.23 133.11 1 23082000 16720 17708 18457 19197 18217 17845 19220 18582 20218 111950 15828 16737 18485 19598 18516 18167 19543 21984 19907 105840 1 1 1 1 1 1 1 1 1 1 5896 774 5191 5533 6552 6552 VNPTVFFDIAVDGEPLGR 18 Unmodified _VNPTVFFDIAVDGEPLGR_ 0 0 0 0 P62937 P62937 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 726.061462402344 3 649.338786 1944.99453 37006.5818693399 1.1441 0.00074291 117640 76.388 117640 76.389 726.060947201503 101.66 0.14666 101.66 101.56 101.7 0 14 4 5 0.982740228186882 0.00991025287505079 0.0869758122298825 9.8005E-11 1 23911 176.68 164.32 1 76992000 6624.9 6026.6 5777.8 8105.4 6850.3 6692.3 7079.8 5928.3 6709.5 19226 6265.7 5705 5880.2 8172.8 6891.3 6797.7 7185.5 6555.5 6635.9 18241 1 1 1 1 1 1 1 1 1 1 5897 774 5191 5533 6553 6553 VNPTVFFDIAVDGEPLGR 18 Acetyl (Protein N-term) _(ac)VNPTVFFDIAVDGEPLGR_ 1 0 0 0 P62937 P62937 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 994.511962890625 2 994.509822 1987.00509 31365.3884981571 1.6967 0.0016874 0.040485 4.0263E-05 1.7372 0.0017277 994.510303836162 103.72 0.19919 103.72 103.6 103.8 0 19 6 5 0.942830997172625 0.00614510529908152 0.300096860611511 8.6744E-23 1 24442 155.86 125.92 1 27254000 1392 1614.9 1865.7 2594.8 2258.7 2107.4 2037.6 2097.6 1613.2 20482 1319 1531.1 1855.8 2596.6 2265.4 2172.6 2073.1 2721.6 1609.7 19335 1 1 1 1 1 1 1 1 1 1 5898 774 5191 5534 6554 6554 VNQSALEAVTPSPSFQQR 18 Phospho (STY) _VNQSALEAVTPS(ph)PSFQQR_ VNQSALEAVT(0.004)PS(0.951)PS(0.045)FQQR VNQS(-93.19)ALEAVT(-24.32)PS(13.24)PS(-13.24)FQQR 0 0 1 0 Q9UKG1 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.047607421875 3 680.324638 2037.95208 35530.1640309677 1.8044 0.0012276 112280 76.388 112280 76.389 756.712411737554 71.778 0.46267 71.778 71.461 71.924 0 24 15 2 0.744435639374517 0.00149952031229284 0.0183170894116723 2.2014E-05 1 16836 126.97 97.883 4 10467000 6521.4 6037.8 5636.8 5187.7 6613.9 6591.5 7174.3 6476.8 6668.8 11119 6167.6 5698.8 5739.8 5401 6661.5 6563.8 7262 6836.2 6601.5 10620 1 1 1 1 1 1 1 1 1 1 5899 2171 5192 5535 6555 6555 3912 VNSGDTEVGSSLLR 14 Phospho (STY) _VNS(ph)GDTEVGSSLLR_ VNS(0.737)GDT(0.263)EVGSSLLR VNS(4.48)GDT(-4.48)EVGS(-45.78)S(-49.52)LLR 0 0 1 0 O75592 O75592 O75592 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 872.431091308594 2 757.348335 1512.68212 33103.833712833 1.8893 0.0014308 151290 114.58 151290 114.58 871.929161626518 69.37 0.63781 69.37 69.12 69.758 0 62 21 4 0.866098067289877 0.00132634488715843 0.0424570510055038 0.0027943 1 16249 97.183 72.832 4 28128000 10192 10558 11738 9398.4 15267 11014 16253 14633 8893.5 20535 9649.7 9966.8 11776 9746.7 15292 11051 16295 15157 9087.3 19675 1 1 1 1 1 1 1 1 1 1 5900 194 5193 5536 6556 6556 340 VNSMVAYK 8 Phospho (STY) _VNS(ph)MVAYK_ VNS(1)MVAYK VNS(64.18)MVAY(-64.18)K 0 0 1 0 Q13257 Q13257 Q13257 MAD2L1 Mitotic spindle assembly checkpoint protein MAD2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.384765625 2 496.219561 990.424569 36286.3943546597 2.4859 0.0012335 461820 229.16 461820 229.16 725.383384343707 67.132 0.43658 67.132 66.891 67.328 -1.4211E-14 26 14 2 0.837045732847027 0.0019295716092141 0.0810370752619721 0.0059813 1 15764 93.345 64.387 2 17535000 19306 9736.4 20181 9486.9 11232 22857 11485 15201 9426.9 7468.5 18272 9196.2 20162 9970.9 11929 22232 11622 15770 9388.8 7384.3 1 1 1 1 1 1 1 1 1 1 5901 941 5194 5537 6557 6557 1556 VNSQPGPQK 9 Phospho (STY) _VNS(ph)QPGPQK_ VNS(1)QPGPQK VNS(96.07)QPGPQK 0 0 1 0 Q8TF42 Q8TF42 Q8TF42 UBASH3B Ubiquitin-associated and SH3 domain-containing protein B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 746.899841308594 2 517.736964 1033.45937 36915.8087975453 1.5578 0.00080655 442620 229.16 442630 229.16 746.899127289334 37.443 0.38986 37.443 37.325 37.714 0 27 15 2 0.964691554656302 0.00128011713332055 0.00527122074864386 0.0033152 1 8470 96.067 70.631 1 74466000 18178 6904.1 17164 7854.8 106450 18001 104830 46079 6847 4945.9 17198 6527.5 18431 8170.1 102640 17952 104100 45281 10912 5723.6 1 1 1 1 1 1 1 1 1 1 5902 1558 5195 5538 6558 6558 2866 VNSTANAETQATSAFQTQKPLK 22 Phospho (STY) _VNS(ph)TANAETQATSAFQTQKPLK_ VNS(0.809)T(0.191)ANAETQATSAFQTQKPLK VNS(6.26)T(-6.26)ANAET(-87.8)QAT(-132.24)S(-137.64)AFQT(-162.6)QKPLK 0 0 1 1 P06400 P06400 P06400 RB1 Retinoblastoma-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.665954589844 4 604.544247 2414.14788 36624.9264849206 1.4538 0.00087886 284300 171.87 284300 171.87 776.666617531758 70.423 0.41145 70.423 70.185 70.596 0 34 13 4 0.791041161612832 0.000860780408801957 0.0019704781124983 6.6605E-12 2 16536 195.38 168.57 6 38909000 25399 14070 26334 16341 14503 29228 13450 21735 16556 23780 24038 13304 26316 16846 15404 28673 13827 22809 16204 22895 2 2 2 2 2 2 2 2 2 2 5903 310 5196 5539 6559;6560 6559 512 VNVEDAGGETLGR 13 Unmodified _VNVEDAGGETLGR_ 0 0 0 0 P69892;P69891 P69892 P69892 HBG2;HBG1 Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 773.4072265625 2 658.82568 1315.63681 35594.6406032239 1.3271 0.00087435 173920 114.58 173920 114.58 773.406815602435 52.797 0.40919 52.797 52.52 52.929 0 42 13 4 0.988789272273524 0.00178141859961249 0.0434436672242786 3.3346E-15 1 12269 221.09 149.4 1 53818000 13836 66387 13270 62776 12357 11747 11347 28272 69043 11071 13090 62693 13382 63857 12634 14281 13178 28052 65677 11079 1 1 1 1 1 1 1 1 1 1 5904 791 5197 5540 6561 6561 VNVTVDYIRPASPATETVPAFSER 24 Phospho (STY) _VNVTVDYIRPAS(ph)PATETVPAFSER_ VNVTVDYIRPAS(1)PATETVPAFSER VNVT(-56.25)VDY(-141.91)IRPAS(36.04)PAT(-36.04)ET(-72.75)VPAFS(-157.19)ER 0 0 1 1 Q7KZF4 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 977.165100097656 3 900.44073 2698.30036 31744.3537197013 1.4366 0.0012936 84834 76.388 84835 76.389 977.162515930561 84.462 0.5661 84.462 84.187 84.753 -1.4211E-14 94 19 7 0.981637641779287 0.00538187461287355 0.0416469334902061 2.4538E-24 1 19708 255.56 234.66 6 72239000 8814.5 13464 7264.4 11528 6030 8439.9 6867.2 9785.9 13142 26069 8334.9 12708 7390.4 11905 6210 8663.6 7121.8 10549 12701 24774 1 1 1 1 1 1 1 1 1 1 5905 1314 5198 5541 6562 6562 2348 VPADQSPAGSGAYEDVAGGAQTGGLGFNLR 30 Phospho (STY) _VPADQS(ph)PAGSGAYEDVAGGAQTGGLGFNLR_ VPADQS(1)PAGSGAYEDVAGGAQTGGLGFNLR VPADQS(33.92)PAGS(-33.92)GAY(-73.22)EDVAGGAQT(-123.45)GGLGFNLR 0 0 1 0 Q99952 Q99952 Q99952 PTPN18 Tyrosine-protein phosphatase non-receptor type 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1058.51293945313 3 981.448724 2941.32434 31240.5245130871 0.92356 0.00090643 77832 76.388 77833 76.389 1058.50496916981 87.822 0.52815 87.822 87.47 87.998 1.4211E-14 33 17 3 0.949283137557651 0.00136405303821193 0.0167382308271526 1.0546E-07 1 20465 153.66 140.99 4 12476000 1519.6 1966.2 1648.4 2003 3284.8 1519.5 2863.6 3216 1999 30194 1438.4 1857.6 1671.7 2046.6 3230 1622.8 2911.4 4070 2009.1 28506 1 1 1 1 1 1 1 1 1 1 5906 1796 5199 5542 6563 6563 3304 VPAKLSPMK 9 Oxidation (M),Phospho (STY) _VPAKLS(ph)PM(ox)K_ VPAKLSPM(1)K VPAKLS(1)PMK VPAKLSPM(56.23)K VPAKLS(56.23)PMK 0 1 1 1 P35658 P35658 P35658 NUP214 Nuclear pore complex protein Nup214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.347290039063 3 356.183733 1065.52937 40203.7477939665 2.18 0.00077647 643380 229.16 643390 229.16 585.346556864045 56.771 0.55952 56.771 56.513 57.072 -7.1054E-15 46 18 3 0.988154448589569 0.00425522162631882 0.0725061974034078 0.037855 1 13250 56.225 34.718 1 44441000 18844 21858 17631 22076 18109 19140 16971 20398 24250 3566.7 17827 20649 17826 22606 18340 19338 17529 20519 23619 3830.5 1 1 1 1 1 1 1 1 1 1 5907 551 5200 5543 6564 6564 73 899 VPAKLSPMK 9 Phospho (STY) _VPAKLS(ph)PMK_ VPAKLS(1)PMK VPAKLS(88.8)PMK 0 0 1 1 P35658 P35658 P35658 NUP214 Nuclear pore complex protein Nup214 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.015441894531 3 350.852094 1049.53445 40556.0925491632 1.9627 0.0006886 653160 229.16 653160 229.16 580.014893813217 65.559 0.64169 65.559 65.284 65.926 0 86 21 6 0.808197304864265 0.0099214192002067 0.243141727391598 0.004101 1 15374 88.803 67.253 1 91848000 26488 44374 28588 42924 28437 24952 33050 33910 44378 1851.6 25072 41910 28673 43873 28942 25928 33730 33722 43307 2528.3 1 1 1 1 1 1 1 1 1 1 5908 551 5200 5544 6565 6565 899 VPASPLPGLER 11 Phospho (STY) _VPAS(ph)PLPGLER_ VPAS(1)PLPGLER VPAS(164.21)PLPGLER 0 0 1 0 Q7KZI7 Q7KZI7 Q7KZI7 MARK2 Serine/threonine-protein kinase MARK2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 722.893493652344 2 608.310296 1214.60604 36279.0088999528 2.0758 0.0012627 188360 114.58 188360 114.58 722.89176445511 72.797 0.73107 72.797 72.454 73.185 0 85 24 5 0.851597948850095 0.00356366393711399 0.118670649750142 4.4628E-07 1 17053 164.21 123.97 1 108840000 18191 31432 21241 31084 20517 23517 18858 24795 31277 21988 17225 29691 21201 31816 20852 23967 19616 25484 30334 21278 1 1 1 1 1 1 1 1 1 1 5909 1315 5201 5545 6566 6566 2351 VPCNVEGISPELEK 14 Phospho (STY) _VPCNVEGIS(ph)PELEK_ VPCNVEGIS(1)PELEK VPCNVEGIS(122.57)PELEK 0 0 1 0 Q86VQ1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 704.032775878906 3 550.919673 1649.73719 37539.4591873803 2.0568 0.0011331 277310 152.78 277310 152.78 703.694714470746 76.966 0.4303 76.966 76.766 77.196 0 54 14 5 0.900655231813066 0.00226590739318687 0.0113033851375284 8.1536E-05 1 18038 122.57 87.615 1 10638000 8369.9 6080.5 7996.5 6564.1 6317.1 9265.1 5918.8 6246.2 6507.2 7304.7 7918.7 5746.8 8052.2 6753.7 6504.7 9142.2 6060.1 6602.5 6395.7 7022.8 1 1 1 1 1 1 1 1 1 1 5910 1382 5202 5546 6567 6567 2507 VPDSPSPAPSLEEGR 15 Phospho (STY) _VPDS(ph)PSPAPSLEEGR_ VPDS(0.998)PS(0.002)PAPSLEEGR VPDS(27.07)PS(-27.07)PAPS(-96.53)LEEGR 0 0 1 0 Q9UI36 Q9UI36 Q9UI36 DACH1 Dachshund homolog 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.9453125 2 809.361442 1616.70833 32852.6932036475 1.8042 0.0014602 141570 114.58 141570 114.58 923.944563704471 56.834 0.64832 56.834 56.541 57.19 0 57 21 4 0.970728726842947 0.00147753618140869 0.0390516617198192 1.4074E-22 1 13263 262.42 234.13 3 20175000 13779 5431.3 15089 5528.4 9520 14360 10888 10411 5680.5 12087 13043 5131.3 15053 5812.3 10004 13973 10875 10960 5825.8 11623 1 1 1 1 1 1 1 1 1 1 5911 2154 5203 5547 6568 6568 3877 VPKSPEHSAEPIR 13 Phospho (STY) _VPKS(ph)PEHSAEPIR_ VPKS(0.961)PEHS(0.039)AEPIR VPKS(13.96)PEHS(-13.96)AEPIR 0 0 1 1 Q9ULH0 Q9ULH0 Q9ULH0 KIDINS220 Kinase D-interacting substrate of 220 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.69384765625 3 509.583612 1525.72901 39431.4975283628 2.2875 0.0011657 299800 152.78 299810 152.78 662.358921822665 41.917 0.42462 41.917 41.711 42.136 7.1054E-15 46 14 4 0.881543893698844 0.00370569860497616 0.0289534237998304 0.0001265 1 9556 110.74 94.745 2 39282000 15318 38568 15338 36046 17758 17056 19044 26030 39853 9102.1 14494 36420 15475 36860 17916 18074 19893 26036 38440 9173.2 1 1 1 1 1 1 1 1 1 1 5912 2183 5204 5548 6569 6569 3949 VPLAPITDPQQLQLSPLK 18 Phospho (STY) _VPLAPITDPQQLQLS(ph)PLK_ VPLAPITDPQQLQLS(1)PLK VPLAPIT(-190.38)DPQQLQLS(190.38)PLK 0 0 1 0 P31350 P31350 P31350 RRM2 Ribonucleoside-diphosphate reductase subunit M2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.148498535156 3 680.037658 2037.09114 34417.053416375 1.8583 0.0012637 224660 152.78 224660 152.78 833.147349255167 100.63 0.44917 100.63 100.51 100.95 1.4211E-14 55 15 7 0.988646470297375 0.0917565144493019 1 6.3766E-23 1 23540 270.68 242.97 2 1121100000 75359 263040 84046 255330 19093 86852 20066 118770 293410 30793 71341 248440 83337 259930 23482 95035 27864 118830 277920 31744 1 1 1 1 1 1 1 1 1 1 5913 520 5205 5549 6570 6570 849 VPLSPLSLLAGPADAR 16 Phospho (STY) _VPLS(ph)PLSLLAGPADAR_ VPLS(0.978)PLS(0.022)LLAGPADAR VPLS(16.5)PLS(-16.5)LLAGPADAR 0 0 1 0 Q53ET0 Q53ET0 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 943.521057128906 2 828.939663 1655.86477 33868.0692639981 1.409 0.001168 138230 114.58 138230 114.58 943.519787753337 102.09 0.11745 102.09 102.01 102.13 0 7 3 3 0.645754356687624 0.000571179836521558 0.0184205070769554 7.7867E-05 1 24054 125.61 91.736 2 8242700 6911.1 8353.8 7381.9 8197.7 5784.5 6572.7 5539.1 8904.6 9857.1 95872 6541.4 7890.7 7386.1 8400.6 5965 6870.4 5768.4 11730 9542.9 90481 1 1 1 1 1 1 1 1 1 1 5914 1146 5206 5550 6571 6571 1993 VPPAPVPCPPPSPGPSAVPSSPK 23 Phospho (STY) _VPPAPVPCPPPS(ph)PGPSAVPSSPK_ VPPAPVPCPPPS(0.517)PGPS(0.159)AVPS(0.162)S(0.162)PK VPPAPVPCPPPS(5.03)PGPS(-5.12)AVPS(-5.03)S(-5.03)PK 0 0 1 0 O95817 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.366638183594 4 575.535265 2298.11196 37564.7385093165 1.8957 0.001091 199090 114.58 199090 114.58 690.366382489123 72.425 1.8132 72.425 71.372 73.185 0 138 61 3 0.829576174157457 0.000657107770583508 0.0156776510791061 0.044029 1 16785 42.468 19.566 4 18115000 4439.7 5384.2 4560 6257.7 4542.5 4622.8 3921.1 5099.2 5575.5 7354.7 4201.5 5091.2 4583.3 6345.7 4603.6 4726.4 4066.5 5318 5431.2 7043.4 1 1 1 1 1 1 1 1 1 1 5915 265 5207 5551 6572 6572 443 VPPPRSPQAQEAPVNIDEGLTGCTIQLLPAQDK 33 Phospho (STY) _VPPPRS(ph)PQAQEAPVNIDEGLTGCTIQLLPAQDK_ VPPPRS(1)PQAQEAPVNIDEGLTGCTIQLLPAQDK VPPPRS(140.34)PQAQEAPVNIDEGLT(-140.34)GCT(-186.8)IQLLPAQDK 0 0 1 1 P78559 P78559 P78559 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1020.78802490234 4 905.701104 3618.77531 31437.0413585073 1.5881 0.0014383 126510 114.58 126510 114.58 1020.78393578314 93.602 1.1619 93.602 93.24 94.402 0 127 39 5 0.776752388894156 0.00197327413030002 0.0381231183338668 2.6961E-18 2 21755 239 224.46 3 30089000 2803.9 16645 2497.1 17887 5157.6 4610.3 5379.4 9740.3 18522 73327 2652 15731 2565.1 18077 5092.4 5416.1 5825 11781 17718 69272 2 2 2 2 2 2 2 2 2 2 5916 806 5208 5552 6573;6574 6573 1290 VPSAGSSLVPLNAK 14 Phospho (STY) _VPS(ph)AGSSLVPLNAK_ VPS(0.996)AGS(0.004)SLVPLNAK VPS(24.38)AGS(-24.38)S(-42.41)LVPLNAK 0 0 1 0 Q8IX21 Q8IX21 Q8IX21 FAM178A Protein FAM178A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 626.688415527344 3 473.912958 1418.71705 41232.8399565953 1.9899 0.00094304 322370 152.78 322370 152.78 626.688293160226 82.37 0.45338 82.37 82.173 82.626 1.4211E-14 37 15 3 0.935839517346962 0.00112594144957353 0.0165240988456531 2.6924E-05 1 19274 133.48 100.07 3 9952700 6804.4 3973.5 7544.3 4758.8 5754.3 8192.9 4417.7 5413.9 4788.7 3879.7 6441.5 3758.1 7529.7 4893.5 5926.6 8031.3 4571.1 5655.2 4709.3 3778.5 1 1 1 1 1 1 1 1 1 1 5917 1423 5209 5553 6575 6575 2593 VPSEGAYDIILPR 13 Phospho (STY) _VPS(ph)EGAYDIILPR_ VPS(1)EGAYDIILPR VPS(67.63)EGAY(-67.63)DIILPR 0 0 1 0 Q9NQ84 Q9NQ84 Q9NQ84 GPRC5C G-protein coupled receptor family C group 5 member C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 580.639221191406 3 503.91648 1508.72761 40818.8151443484 1.5286 0.0007703 151590 76.388 151590 76.388 580.304061601105 93.744 0.60743 93.744 93.475 94.082 1.4211E-14 62 20 4 0.950272422700756 0.00283066993077854 0.0915545589981229 8.2706E-05 1 21809 120.66 107.9 2 17589000 1892.4 2775 1588.6 2826.8 1582.1 1793.4 1327.1 2137 2239 8050.9 1789.5 2621.8 1616.6 2882.7 1603.1 1863.2 1388.1 2372.8 2170.5 7630.4 1 1 1 1 1 1 1 1 1 1 5918 2002 5210 5554 6576 6576 3634 VPSPGMEEAGCSR 13 Phospho (STY) _VPS(ph)PGMEEAGCSR_ VPS(1)PGMEEAGCSR VPS(142.55)PGMEEAGCS(-142.55)R 0 0 1 0 Q96RL1 Q96RL1 Q96RL1 UIMC1 BRCA1-A complex subunit RAP80 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.36474609375 2 728.783459 1455.55236 34259.1363212743 2.2104 0.0016109 157220 114.58 157220 114.58 843.364614386012 49.612 0.55819 49.612 49.367 49.925 7.1054E-15 67 18 5 0.976490842272865 0.00159488974087658 0.0127122137857737 7.0768E-16 1 11493 230.54 207.62 2 69613000 11743 20774 12982 19051 13936 13005 14293 14761 20473 9018.9 11117 19615 13013 19569 14097 13344 14702 15010 19939 8834 1 1 1 1 1 1 1 1 1 1 5919 1738 5211 5555 6577 6577 3192 VPSPLEGSEGDGDTD 15 Unmodified _VPSPLEGSEGDGDTD_ 0 0 0 0 Q9Y606 Q9Y606 Q9Y606 PUS1 tRNA pseudouridine synthase A, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 852.396362304688 2 737.812632 1473.61071 31659.4547805858 1.924 0.0014195 155300 114.58 155300 114.58 852.393805277926 63.999 0.69439 63.999 63.633 64.328 7.1054E-15 50 23 3 0.977164173581647 0.00103752815603475 0.022712024945547 1.332E-10 1 14991 208.59 200.37 1 27710000 11163 8923 13545 8149.9 9086.6 12246 8842.3 10439 7325.9 24517 10572 8424.9 13447 8481 9479.5 12115 8970.9 11279 7292.8 23327 1 1 1 1 1 1 1 1 1 1 5920 2303 5212 5556 6578 6578 VPSPTPAPK 9 Phospho (STY) _VPS(ph)PTPAPK_ VPS(0.835)PT(0.165)PAPK VPS(7.05)PT(-7.05)PAPK 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 477.939117431641 3 325.163326 972.468148 45780.9741915949 0.6507 0.00021158 469840 152.78 469840 152.78 477.938565220105 50.044 0.61558 50.044 49.658 50.274 7.1054E-15 50 20 4 0.96037318332765 0.00295148922554547 0.0666233798249848 0.0037752 1 11593 90.05 61.092 2 32910000 14282 12032 15391 12489 10499 14693 10132 10662 12279 1643.8 13518 11369 15373 12831 10940 14582 10390 10900 12025 1794.6 1 1 1 1 1 1 1 1 1 1 5921 2226 5213 5557 6579 6579 4073 VPSTPPPK 8 Phospho (STY) _VPS(ph)TPPPK_ VPS(0.5)T(0.5)PPPK VPS(0)T(0)PPPK 0 0 1 0 Q9H7N4 Q9H7N4 Q9H7N4 SCAF1 Splicing factor, arginine/serine-rich 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 454.259552001953 3 301.484288 901.431034 47222.9516986504 0.35705 0.00010764 506740 152.78 506740 152.78 454.259587588159 48.873 1.6505 48.873 47.803 49.453 7.1054E-15 117 56 3 0.963331147650068 0.000733227209118499 0.00802985256761048 0.0077443 1 11302 80.688 58.696 2 18063000 11525 10918 13484 9932.5 10768 12562 10905 10968 11155 1444 10913 10308 13432 10301 11090 12457 11101 11107 10996 1613.5 1 1 1 1 1 1 1 1 1 1 5922 1953 5214 5558 6580 6580 3559;4767 VPSVESLFR 9 Phospho (STY) _VPS(ph)VESLFR_ VPS(1)VESLFR VPS(37.09)VES(-37.09)LFR 0 0 1 0 Q13439 Q13439 Q13439 GOLGA4 Golgin subfamily A member 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 671.853210449219 2 557.270639 1112.52673 38922.106015292 1.8257 0.0010174 205610 114.58 205610 114.58 671.852094280511 99.982 0.33484 99.982 99.807 100.14 0 34 11 4 0.94685427007439 0.00508984204872576 0.387419502321324 4.4876E-09 1 23281 183.57 112.12 2 123590000 25782 51151 27668 51536 33091 26472 37294 38163 51586 19018 24403 48322 27826 52489 33333 27835 38151 38400 50294 18791 1 1 1 1 1 1 1 1 1 1 5923 955 5215 5559 6581 6581 1605 VPVLISPTLK 10 Phospho (STY) _VPVLIS(ph)PTLK_ VPVLIS(0.884)PT(0.116)LK VPVLIS(8.8)PT(-8.8)LK 0 0 1 0 P42684 P42684 P42684 ABL2 Abelson tyrosine-protein kinase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.994323730469 2 573.830333 1145.64611 36187.4796624386 2.4487 0.0014051 399360 229.16 399360 229.16 802.993160218964 96.019 0.43861 96.019 95.792 96.231 -1.4211E-14 33 14 3 0.690563733586925 0.00116839101355261 0.0860464235930537 0.00031715 1 22324 112.45 87.602 2 7666700 8293 10350 8503.5 10102 9154.1 7716.9 8997.7 10218 11233 19694 7848.1 9776.1 8558.1 10349 9251.1 7910 9227.6 10746 10989 18780 1 1 1 1 1 1 1 1 1 1 5924 590 5216 5560 6582 6582 961 VQAGPGSPR 9 Phospho (STY) _VQAGPGS(ph)PR_ VQAGPGS(1)PR VQAGPGS(99.32)PR 0 0 1 0 Q6PK04 Q6PK04 Q6PK04 CCDC137 Coiled-coil domain-containing protein 137 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 589.300842285156 2 474.718574 947.422595 40786.9500084371 1.9177 0.00091035 241370 114.58 241370 114.58 589.299646653226 30.439 0.44741 30.439 30.224 30.672 0 40 14 4 0.734279016751592 0.0025265326152686 0.115498665058823 0.0016974 1 6815 99.318 40.12 1 30615000 25462 27116 22970 26605 16312 24191 18598 25162 28810 4142 24084 25613 23195 27310 16989 24375 19101 25327 27994 4482.5 1 1 1 1 1 1 1 1 1 1 5925 1272 5217 5561 6583 6583 2254 VQDDEVGDGTTSVTVLAAELLR 22 Unmodified _VQDDEVGDGTTSVTVLAAELLR_ 0 0 0 0 P78371 P78371 P78371 CCT2 T-complex protein 1 subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.114929199219 3 763.392055 2287.15433 34096.2828422937 1.0227 0.00078069 100060 76.388 100060 76.389 840.113938608126 101.32 0.20011 101.32 101.16 101.36 1.4211E-14 15 6 4 0.834113665738713 0.00719755564879422 0.165888530085557 4.9745E-08 1 23804 155.11 135.3 1 195890000 13398 16235 12555 13358 13281 12497 16407 15246 10092 117990 12674 15320 12705 13877 13473 12822 16378 18742 10225 111450 1 1 1 1 1 1 1 1 1 1 5926 800 5218 5562 6584 6584 VQDTSNTGLGEDIIHQLSK 19 Phospho (STY) _VQDTS(ph)NTGLGEDIIHQLSK_ VQDT(0.35)S(0.648)NT(0.002)GLGEDIIHQLSK VQDT(-2.68)S(2.68)NT(-24.79)GLGEDIIHQLS(-252)K 0 0 1 0 Q8IWA0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.114807128906 3 712.338724 2133.99434 32976.8333602431 1.963 0.0013983 214470 152.77 214470 152.78 865.448025751473 95.647 1.2672 95.647 95.282 96.549 -1.4211E-14 161 43 6 0.983655906296744 0.00281722268185424 0.0369221169058721 4.1784E-32 1 22203 320.57 279.12 4 101200000 11286 12225 10875 11827 5627.5 12634 6270 11763 13862 19942 10678 11547 10911 12181 6036.8 12655 6559.4 12434 13356 19050 1 1 1 1 1 1 1 1 1 1 5927 1413 5219 5563 6585 6585 2575;4652 VQDTSNTGLGEDIIHQLSK 19 Phospho (STY) _VQDT(ph)SNTGLGEDIIHQLSK_ VQDT(0.541)S(0.344)NT(0.114)GLGEDIIHQLSK VQDT(1.96)S(-1.96)NT(-6.76)GLGEDIIHQLS(-149.21)K 0 0 1 0 Q8IWA0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 865.115173339844 3 712.338724 2133.99434 NaN NaN NaN NaN NaN NaN NaN NaN 96.414 1 96.414 95.914 96.914 0 NaN NaN NaN 1.4327E-08 1 22418 158.67 122.96 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5928 1413 5219 5563 6586 6586 2575;4652 VQEHEDSGDSEVENEAK 17 2 Phospho (STY) _VQEHEDS(ph)GDS(ph)EVENEAK_ VQEHEDS(1)GDS(1)EVENEAK VQEHEDS(176.57)GDS(176.57)EVENEAK 0 0 2 0 Q9Y5J1 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.690368652344 3 687.915583 2060.72492 NaN NaN NaN NaN NaN NaN NaN NaN 45.388 1 45.388 44.888 45.888 0 NaN NaN NaN 1.8165E-13 1 10448 176.57 144.8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5929 2293 5220 5564 6587 6587 4234;4235 VQEKPDSPGGSTQIQR 16 Phospho (STY) _VQEKPDS(ph)PGGSTQIQR_ VQEKPDS(1)PGGSTQIQR VQEKPDS(39.99)PGGS(-39.99)T(-45.21)QIQR 0 0 1 1 Q13459 Q13459 Q13459 MYO9B Unconventional myosin-IXb MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 756.061279296875 3 602.950912 1805.83091 35557.2047770463 1.3532 0.00081591 253380 152.77 253380 152.78 755.725818353864 40.469 0.47656 40.469 40.238 40.714 7.1054E-15 55 15 5 0.931638748755452 0.0104242750569198 0.110297415507701 7.6366E-08 2 9232 171.29 148.08 3 95810000 57853 57958 58543 63842 104690 65880 110210 82162 76088 14472 54746 54784 59485 65224 103560 66175 110980 82220 76523 15529 2 2 2 2 2 2 2 2 2 2 5930 958 5221 5565 6588;6589 6588 1611 VQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 35 Phospho (STY) _VQGEAVSNIQENTQTPTVQEES(ph)EEEEVDETGVEVK_ VQGEAVSNIQENTQTPTVQEES(1)EEEEVDETGVEVK VQGEAVS(-164.16)NIQENT(-125.36)QT(-83)PT(-42.01)VQEES(42.01)EEEEVDET(-67.2)GVEVK 0 0 1 0 Q13765;E9PAV3 Q13765 Q13765 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1467.69592285156 3 1314.24962 3939.72702 26051.0220365134 1.5526 0.0020406 116250 152.78 116250 152.78 1467.69409067855 73.212 1.6429 73.212 72.897 74.54 1.4211E-14 197 56 7 0.991958589804034 0.00620597495473636 0.0954131708998471 2.6764E-18 3 17190 228.86 206.43 6 68890000 370.73 534.9 885.94 925.63 521.94 901.9 485.36 4527.2 1598.3 116630 350.37 506.44 853.86 922.25 513.72 1170.2 505.45 7915 1529.8 109930 1 1 2 2 2 3 2 3 3 3 5931 28 5222 5566 6590;6591;6592 6591 48;4315 VQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 35 Phospho (STY) _VQGEAVSNIQENTQTPT(ph)VQEESEEEEVDETGVEVK_ VQGEAVSNIQENT(0.002)QT(0.039)PT(0.416)VQEES(0.416)EEEEVDET(0.128)GVEVK VQGEAVS(-44.71)NIQENT(-24.37)QT(-10.33)PT(0)VQEES(0)EEEEVDET(-5.11)GVEVK 0 0 1 0 Q13765;E9PAV3 Q13765 Q13765 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.020568847656 5 788.952681 3939.72702 33264.6682416626 1.7481 0.0013792 116190 91.665 116190 91.667 880.818635596544 73.163 1.4358 73.163 72.867 74.302 0 196 49 7 0.728514897081398 0.00496761998926701 0.0334433693168258 0.0076139 1 17238 75.186 61.133 6 145120000 8383.9 6531.9 8782.2 8667.2 6716.7 10234 7920.4 10921 8034.5 77431 7934.8 6182.6 8797.2 8794.1 6955.2 10343 8007.6 13261 7922.8 73163 1 1 1 1 1 1 1 1 1 1 5932 28 5222 5566 6593 6593 48;4315 VQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 35 Phospho (STY) _VQGEAVSNIQENTQTPT(ph)VQEESEEEEVDETGVEVK_ VQGEAVSNIQENTQTPT(0.984)VQEES(0.016)EEEEVDETGVEVK VQGEAVS(-129.76)NIQENT(-86.11)QT(-40.77)PT(17.82)VQEES(-17.82)EEEEVDET(-74.9)GVEVK 0 0 1 0 Q13765;E9PAV3 Q13765 Q13765 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1101.02416992188 4 985.939032 3939.72702 29601.19670821 1.7033 0.0016794 116220 114.58 116220 114.58 1101.02180639936 73.197 5.7468 73.197 72.542 78.289 0 858 198 9 0.987839745329975 0.0106450501679132 0.159560815341107 5.5381E-18 4 17479 223.1 195.77 6 781020000 9827.5 11259 10532 11132 8694.9 8864.1 8924.3 12807 10101 194650 9301.9 10636 10543 11401 8936.4 9402.1 9105.4 18559 9916.6 183590 4 4 4 4 4 4 4 4 4 4 5933 28 5222 5566 6594;6595;6596;6597 6594 48;4315 VQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 35 Phospho (STY) _VQGEAVSNIQENTQTPT(ph)VQEESEEEEVDETGVEVK_ VQGEAVSNIQENTQT(0.002)PT(0.499)VQEES(0.499)EEEEVDETGVEVK VQGEAVS(-87.38)NIQENT(-48.38)QT(-24.86)PT(0)VQEES(0)EEEEVDET(-38.13)GVEVK 0 0 1 0 Q13765;E9PAV3 Q13765 Q13765 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1100.77197265625 4 985.939032 3939.72702 30998.9707562937 1.6675 0.0016441 116210 114.58 116220 114.58 1100.77035732887 80.771 0.43563 80.771 80.434 80.87 1.4211E-14 26 14 3 0.604792581998781 0.000375946210672876 0.00904713982964866 1.4458E-06 1 18925 137.5 117.47 6 7147300 1500.7 1508.7 1343.4 2019.5 1434.2 1953 1286 1944.3 1617.4 23075 1419.5 1428.1 1362.6 2041.3 1448.3 2003.9 1325.3 2645.9 1581.9 21773 1 1 1 1 1 1 1 1 1 1 5934 28 5222 5566 6598 6598 48;4315 VQGLLENGDSVTSPEK 16 Phospho (STY) _VQGLLENGDSVTS(ph)PEK_ VQGLLENGDSVT(0.041)S(0.959)PEK VQGLLENGDS(-37.64)VT(-13.72)S(13.72)PEK 0 0 1 0 P41229 P41229 P41229 KDM5C Lysine-specific demethylase 5C MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.71630859375 3 584.939901 1751.79787 36816.1750842389 1.8375 0.0010748 261180 152.78 261180 152.78 737.715168804872 76.419 0.5507 76.419 76.126 76.676 0 29 18 2 0.599448853225388 0.00181419806388285 0.0670139187894921 1.0362E-05 1 17933 135.91 114.04 3 9590300 9249.6 6195.2 7545.6 5926.8 6959.4 7586.7 6685 7484.9 6984.9 8480.9 8746.1 5850.8 7688.3 6128.5 7093.4 7545.1 6826.1 7767.4 6879.3 8159 1 1 1 1 1 1 1 1 1 1 5935 579 5223 5567 6599 6599 932 VQISPDSGGLPER 13 Phospho (STY) _VQIS(ph)PDSGGLPER_ VQIS(1)PDSGGLPER VQIS(41.77)PDS(-41.77)GGLPER 0 0 1 0 Q92945 Q92945 Q92945 KHSRP Far upstream element-binding protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 832.418884277344 2 717.834863 1433.65517 33899.4741264974 2.0609 0.0014794 159620 114.58 159620 114.58 832.416636674155 61.136 0.84568 61.136 60.776 61.621 0 82 28 4 0.904777186829019 0.00583095051981816 0.327499805864541 6.8633E-11 1 14305 202.76 163.97 2 109680000 30713 43873 29018 39169 44275 29795 48742 40389 43485 19118 29056 41419 29513 40354 44088 30452 49257 40679 43130 18936 1 1 1 1 1 1 1 1 1 1 5936 1634 5224 5568 6600 6600 3021 VQMTSPSSTGSPMFK 15 Oxidation (M),Phospho (STY) _VQM(ox)T(ph)SPSSTGSPMFK_ VQM(1)TSPSSTGSPMFK VQMT(0.423)S(0.423)PS(0.154)STGSPMFK VQM(89.15)TSPSSTGSPM(-89.15)FK VQMT(0)S(0)PS(-4.39)S(-31.06)T(-40.17)GS(-56.25)PMFK 0 1 1 0 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 713.681457519531 3 560.905146 1679.69361 36147.8417936917 2.0486 0.0011491 272370 152.77 272370 152.78 713.67987994382 66.884 0.54592 66.884 66.544 67.09 0 61 18 4 0.960436391999669 0.00435366206553536 0.142058294644132 0.0007427 1 15693 100.21 69.381 12 26871000 13303 14909 15497 14792 7728.9 13366 9155.2 14628 15381 6800.2 12597 14083 15386 15172 8328 13490 9421.2 14829 14912 6741.7 1 1 1 1 1 1 1 1 1 1 5937 654 5225 5569 6601 6601 83 1090;1091;4471 VQMTSPSSTGSPMFK 15 Phospho (STY) _VQMTSPS(ph)STGSPMFK_ VQMT(0.054)S(0.359)PS(0.546)S(0.039)T(0.002)GSPMFK VQMT(-10.08)S(-1.82)PS(1.82)S(-11.42)T(-25.28)GS(-37.99)PMFK 0 0 1 0 P49790 P49790 P49790 NUP153 Nuclear pore complex protein Nup153 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 708.68359375 3 555.573508 1663.69869 36854.4695071387 2.0908 0.0011616 274990 152.78 274990 152.78 708.348993531726 76.938 0.60717 76.938 76.647 77.254 0 87 20 6 0.997061633790302 0.00852779715595861 0.064368003505724 0.00098325 1 18020 99.092 77.251 6 67150000 12763 14994 13635 13079 6756.1 12892 7168.9 13104 14772 7153.1 12080 14153 13596 13543 7275.3 12946 7485.7 13351 14253 7038.8 1 1 1 1 1 1 1 1 1 1 5938 654 5225 5570 6602 6602 1090;1091;4471 VQPQWSPPAGTQPCR 15 Phospho (STY) _VQPQWS(ph)PPAGTQPCR_ VQPQWS(0.999)PPAGT(0.001)QPCR VQPQWS(30.01)PPAGT(-30.01)QPCR 0 0 1 0 P49589 P49589 P49589 CARS Cysteine--tRNA ligase, cytoplasmic MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.323547363281 3 596.934428 1787.78145 37386.6637874883 1.7584 0.0010496 127970 76.388 127970 76.389 673.32364784852 61.019 1.0469 61.019 60.314 61.36 0 95 35 4 0.546861357973037 0.00198287228129751 0.0355830392774472 0.019329 1 14339 60.329 47.562 2 18255000 15305 14805 14721 12590 12740 14701 11666 13227 14961 8342.9 14480 13973 14830 13096 13034 14638 12017 13576 14623 8162 1 1 1 1 1 1 1 1 1 1 5939 643 5226 5571 6603 6603 1064 VQRPHSSPPR 10 Phospho (STY) _VQRPHSS(ph)PPR_ VQRPHS(0.258)S(0.742)PPR VQRPHS(-4.59)S(4.59)PPR 0 0 1 1 Q9NUJ3 Q9NUJ3 Q9NUJ3 TCP11L1 T-complex protein 11-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 490.590911865234 3 414.203066 1239.58737 44735.732222987 1.0255 0.00042475 184420 76.388 184420 76.388 490.590585495387 24.15 0.61096 24.15 23.7 24.311 -3.5527E-15 44 20 3 0.732848774138429 0.00361341279381055 0.0848697210815607 0.031039 1 5402 48.998 33.732 2 5576700 5297.8 5322.4 6193.6 5672.3 5115.5 6211 5189.9 6885 5443.6 2853.2 5016.4 5029.9 6172.1 5811.5 5256.2 6215.4 5286.3 6966 5360.5 2845.9 1 1 1 1 1 1 1 1 1 1 5940 2037 5227 5572 6604 6604 3699 VQSLEGEKLSPK 12 Phospho (STY) _VQSLEGEKLS(ph)PK_ VQSLEGEKLS(1)PK VQS(-39.87)LEGEKLS(39.87)PK 0 0 1 1 P46821 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.732604980469 3 465.56908 1393.68541 37633.72094188 2.2461 0.0010457 492220 229.16 492220 229.16 694.731603630347 64.124 0.40697 64.124 63.894 64.3 0 42 13 4 0.906210195578541 0.00179238315888295 0.0373995896963617 0.0014692 1 15051 97.284 77.706 2 19786000 7636 31943 7369.9 31729 7819.8 7083.3 5929.8 15875 35213 5986.5 7224.6 30174 7438.3 32195 7909.9 8321.5 6928.7 15764 33503 6004.4 1 1 1 1 1 1 1 1 1 1 5941 616 5228 5573 6605 6605 1019 VQSLPSVPLSCAAYR 15 Phospho (STY) _VQS(ph)LPSVPLSCAAYR_ VQS(0.994)LPS(0.006)VPLSCAAYR VQS(22.54)LPS(-22.54)VPLS(-75.6)CAAY(-89.36)R 0 0 1 0 Q96AD5 Q96AD5 Q96AD5 PNPLA2 Patatin-like phospholipase domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 653.332885742188 3 576.611062 1726.81136 38820.8553727818 1.5617 0.00090051 132480 76.388 132480 76.389 652.998866803049 83.126 0.55813 83.126 82.854 83.412 0 73 18 5 0.880200325708001 0.00421578117610298 0.0157619595093865 0.0016414 1 19402 97.271 63.385 4 42025000 4089.7 3511.8 3834.5 3646.8 4116.7 5209.2 5421.2 4475 3871.4 7581.5 3868.9 3318.2 3881.7 3761.3 4177.9 5156.8 5413.2 4745.6 3885.6 7242.5 1 1 1 1 1 1 1 1 1 1 5942 1645 5229 5574 6606 6606 3039 VQSPEPPAPER 11 Phospho (STY) _VQS(ph)PEPPAPER_ VQS(1)PEPPAPER VQS(175)PEPPAPER 0 0 1 0 Q14160 Q14160 Q14160 SCRIB Protein scribble homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.375793457031 2 643.792467 1285.57038 35867.4548237383 1.9959 0.0012849 177980 114.58 177980 114.58 758.374164200978 38.793 0.55482 38.793 38.467 39.022 0 34 18 2 0.976399853167372 0.0023191787322542 0.0536402496366889 3.9067E-08 1 8796 175 145.47 1 28183000 33599 14332 33154 13480 12757 34000 13037 19103 14362 7816.4 31792 13534 33161 14222 14155 32992 13294 19974 14115 7802.2 1 1 1 1 1 1 1 1 1 1 5943 994 5230 5575 6607 6607 1690 VQSPKPITGGLGAFTK 16 Phospho (STY) _VQS(ph)PKPITGGLGAFTK_ VQS(0.936)PKPIT(0.064)GGLGAFTK VQS(11.68)PKPIT(-11.68)GGLGAFT(-97.75)K 0 0 1 1 Q9ULM3 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 790.1259765625 3 560.962201 1679.86477 36138.1077613049 1.8161 0.0010188 408520 229.16 408520 229.16 790.125867206724 80.998 0.52548 80.998 80.752 81.278 0 59 17 5 0.889703638593106 0.00163647503729993 0.0181866257616638 4.3055E-07 1 18934 149.32 116.77 3 25539000 14280 16732 14971 17928 15938 14157 15440 16871 18719 14560 13515 15813 15046 18274 16113 14420 15831 17257 18331 14100 1 1 1 1 1 1 1 1 1 1 5944 2187 5231 5576 6608 6608 3958 VQTTPPPAVQGQK 13 Phospho (STY) _VQTT(ph)PPPAVQGQK_ VQT(0.237)T(0.763)PPPAVQGQK VQT(-5.09)T(5.09)PPPAVQGQK 0 0 1 0 Q2M2I8 Q2M2I8 Q2M2I8 AAK1 AP2-associated protein kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 630.349548339844 3 477.572825 1429.69664 39737.3227088623 2.2508 0.0010749 319900 152.78 319900 152.78 630.348132169764 49.586 1.3025 49.586 48.709 50.012 7.1054E-15 126 44 4 0.662293907102905 0.00449518185571109 0.0582583737890469 1.0186E-06 1 11525 138.98 114.45 2 33663000 33456 14467 33986 15164 14039 35535 15153 19486 15993 4967.2 31660 13670 33950 15855 15441 34517 15394 20318 15745 5128.2 1 1 1 1 1 1 1 1 1 1 5945 1122 5232 5577 6609 6609 4591 VQTTPSKPGGDR 12 Phospho (STY) _VQTT(ph)PSKPGGDR_ VQT(0.127)T(0.866)PS(0.007)KPGGDR VQT(-8.32)T(8.32)PS(-21.11)KPGGDR 0 0 1 1 Q12834 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 594.317077636719 3 441.541525 1321.60274 40697.104363702 1.4918 0.0006587 346010 152.78 346010 152.78 594.316852373662 35.243 0.7044 35.243 34.887 35.591 0 101 23 6 0.978651220417694 0.00503568924864313 0.0321167515717332 0.012242 1 7902 87.275 57.972 3 97345000 39611 25248 36159 24926 13277 32842 14726 22823 23673 835.8 37470 23849 36331 25740 14854 32442 15166 23307 22978 1315.2 1 1 1 1 1 1 1 1 1 1 5946 905 5233 5578 6610 6610 4519 VRPASTGGLSLLPPPPGGK 19 Phospho (STY) _VRPAS(ph)TGGLSLLPPPPGGK_ VRPAS(0.729)T(0.25)GGLS(0.021)LLPPPPGGK VRPAS(4.65)T(-4.65)GGLS(-15.3)LLPPPPGGK 0 0 1 1 Q9NVZ3 Q9NVZ3 Q9NVZ3 NECAP2 Adaptin ear-binding coat-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.450378417969 3 627.671309 1879.9921 35492.1008367562 1.6695 0.0010479 243400 152.78 243400 152.78 780.446701141106 80.733 0.70751 80.733 80.313 81.021 0 77 23 4 0.775418199227127 0.000868811876115671 0.011830153710201 0.0046014 1 18837 88.976 73.132 3 27237000 5100.8 6449.3 5691.5 4640 5764.2 5892.8 5195.5 5767.8 5327.5 14323 4828.8 6082.1 5696.9 4894.7 5837.3 5876.1 5319.5 6222 5251 13620 1 1 1 1 1 1 1 1 1 1 5947 2051 5234 5579 6611 6611 3712 VRTAGSR 7 Phospho (STY) _VRTAGS(ph)R_ VRTAGS(1)R VRT(-36.12)AGS(36.12)R 0 0 1 1 REV__Q9ULD4 REV__Q9ULD4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 528.282470703125 2 413.700184 825.385815 40570.9055065299 1.3842 0.00057266 276970 114.58 276970 114.58 528.281966333184 23.608 0.78339 23.608 23.324 24.107 0 49 26 4 0.942474396509573 0.0405867821790554 1 0.056604 1 5285 44.98 44.98 2 58004000 10807 18538 11326 19254 17098 11132 17216 17593 19827 23242 10229 17516 11446 19595 17014 11645 17591 18097 19453 22292 1 1 1 1 1 1 1 1 1 1 + 5948 2352 5235 5580 6612 6612 4309 VRVDSTAK 8 Phospho (STY) _VRVDS(ph)TAK_ VRVDS(0.794)T(0.206)AK VRVDS(5.87)T(-5.87)AK 0 0 1 1 P78371 P78371 P78371 CCT2 T-complex protein 1 subunit beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 471.934112548828 3 319.158463 954.453561 45740.4245397249 1.0159 0.00032424 478680 152.78 478680 152.78 471.933861328443 38.526 0.37054 38.526 38.383 38.754 0 30 12 3 0.926522727381651 0.00289650318042129 0.0398895065774841 0.012045 1 8728 67.214 47.453 2 24849000 40760 15885 43947 17414 17349 41871 18940 25212 18219 2715 38582 15015 43746 18180 19198 40674 19183 26017 18008 3140 1 1 1 1 1 1 1 1 1 1 5949 800 5236 5581 6613 6613 1279 VRYDSSNQVK 10 Phospho (STY) _VRYDS(ph)SNQVK_ VRYDS(0.756)S(0.244)NQVK VRY(-47.69)DS(4.91)S(-4.91)NQVK 0 0 1 1 O95983 O95983 O95983 MBD3 Methyl-CpG-binding domain protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 578.638488769531 3 425.862487 1274.56563 40978.0527735122 1.5744 0.00067048 358740 152.78 358740 152.78 578.637833088955 41.115 0.59804 41.115 40.857 41.455 0 72 20 5 0.896642112508904 0.00525266125220671 0.0656387194545144 0.0030868 1 9347 91.993 44.078 3 87990000 15348 26569 16944 26779 19936 15939 20465 23522 30202 3599.7 14529 25100 17008 27309 20072 16562 21073 23409 29388 3933.9 1 1 1 1 1 1 1 1 1 1 5950 271 5237 5582 6614 6614 452;453 VSADAAPDCPETSNQTPPGPGAAAGPGID 29 Phospho (STY) _VSADAAPDCPETSNQT(ph)PPGPGAAAGPGID_ VSADAAPDCPETSNQT(1)PPGPGAAAGPGID VS(-99.63)ADAAPDCPET(-47.36)S(-39.71)NQT(39.71)PPGPGAAAGPGID 0 0 1 0 Q9NXH9 Q9NXH9 Q9NXH9 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1010.78643798828 3 934.063771 2799.16948 30860.2998635451 1.6443 0.0015358 81780 76.388 81782 76.39 1010.78556788898 63.952 0.40202 63.952 63.75 64.152 7.1054E-15 40 13 4 0.973693184551866 0.00123347828941709 0.0317169149679467 5.9702E-08 1 15026 169.18 144.13 4 11057000 2555.1 2838.8 3383.6 2961.1 3336.3 2850.6 3087.2 3119.4 2852.9 23106 2420.9 2682.4 3358.5 3031.1 3384.7 2909.1 3148 3814.8 2824.9 21829 1 1 1 1 1 1 1 1 1 1 5951 2066 5238 5583 6615 6615 4787 VSASSPTTK 9 Phospho (STY) _VSAS(ph)SPTTK_ VSAS(0.451)S(0.451)PT(0.096)T(0.002)K VS(-39.13)AS(0)S(0)PT(-6.71)T(-23.93)K 0 0 1 0 Q9BVI0 Q9BVI0 Q9BVI0 PHF20 PHD finger protein 20 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 708.383239746094 2 479.218072 956.421592 38079.3902291657 2.7074 0.0012974 478200 229.16 478210 229.16 708.382473408864 38.388 0.45757 38.388 38.211 38.668 0 28 15 3 0.837245597004411 0.00128625824537816 0.0322474013516258 0.00016476 1 8702 130.09 93.851 5 15782000 25529 24831 23930 25291 26667 25355 27417 25606 26107 8675 24151 23459 24223 25941 26910 25431 27836 25936 25816 8761.2 1 1 1 1 1 1 1 1 1 1 5952 1843 5239 5584 6616 6616 3371;3372 VSDQNSPVLPK 11 Phospho (STY) _VSDQNS(ph)PVLPK_ VSDQNS(1)PVLPK VS(-40.51)DQNS(40.51)PVLPK 0 0 1 0 Q9UPU5 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 574.646911621094 3 421.870871 1262.59078 40944.6202916264 1.5112 0.00063755 362140 152.78 362140 152.78 574.646146391694 59.678 0.71525 59.678 59.335 60.05 0 88 24 5 0.665649209341995 0.00640998685499306 0.168572741147468 0.00012602 1 13945 112.02 81.817 2 210640000 18609 17254 18940 19041 23157 20915 28421 19435 21759 2657.6 17610 16310 19114 19472 23319 20867 28495 19632 21753 2952.2 1 1 1 1 1 1 1 1 1 1 5953 2220 5240 5585 6617 6617 4019;4020 VSDQNSPVLPKK 12 Phospho (STY) _VS(ph)DQNSPVLPKK_ VS(0.512)DQNS(0.488)PVLPKK VS(0.21)DQNS(-0.21)PVLPKK 0 0 1 1 Q9UPU5 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.068786621094 3 464.569192 1390.68575 39154.9373423964 1.9667 0.00091365 493280 229.16 493280 229.16 694.065668415974 56.263 0.35794 56.263 56.067 56.425 0 30 11 3 0.63350745080242 0.0015652480428408 0.0207883199114638 0.031057 1 13140 53.777 31.904 2 11270000 14750 15029 18301 16960 26065 17801 23747 20847 19739 10391 13970 14208 18314 17309 25956 17863 24174 21106 19646 10267 1 1 1 1 1 1 1 1 1 1 5954 2220 5241 5586 6618 6618 4019;4020 VSDSESEGPQK 11 Phospho (STY) _VS(ph)DSESEGPQK_ VS(0.947)DS(0.05)ES(0.003)EGPQK VS(12.76)DS(-12.76)ES(-24.56)EGPQK 0 0 1 0 Q96ST2 Q96ST2 Q96ST2 IWS1 Protein IWS1 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 850.914245605469 2 621.747922 1241.48129 33928.3415750369 1.5132 0.00094081 368580 229.16 368580 229.16 850.91133441183 40.322 0.47983 40.322 40.149 40.629 0 24 15 2 0.898692906587952 0.000122641884646551 0.00430226038047907 1.3083E-06 1 9214 141.37 76.641 3 8832800 10951 11299 11872 12000 11092 9983.8 11262 11666 12294 7077.7 10366 10677 11892 12246 11306 10132 11484 11849 12086 6934.5 1 1 1 1 1 1 1 1 1 1 5955 1751 5242 5587 6619 6619 3213 VSEEQTQPPSPAGAGMSTAMGR 22 Oxidation (M),Phospho (STY) _VSEEQTQPPS(ph)PAGAGM(ox)STAMGR_ VSEEQTQPPSPAGAGM(0.789)STAM(0.211)GR VSEEQT(0.002)QPPS(0.95)PAGAGMS(0.029)T(0.019)AMGR VSEEQTQPPSPAGAGM(6.08)STAM(-6.08)GR VS(-43.43)EEQT(-26.76)QPPS(16.31)PAGAGMS(-16.31)T(-18.38)AMGR 0 1 1 0 Q16666 Q16666 Q16666 IFI16 Gamma-interferon-inducible protein 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.046508789063 3 762.32398 2283.95011 34749.0836905002 2.168 0.0016527 100200 76.387 100200 76.389 839.045162274843 46.14 0.64539 46.14 45.761 46.406 0 52 21 3 0.683514436506596 0.00198483468464987 0.0526823883153831 0.015901 1 10636 63.427 44.594 10 16560000 13816 10296 13610 12161 19625 12586 19036 15685 12671 11666 13073 9736.5 13789 12380 19546 12657 19231 15965 12772 11348 1 1 1 1 1 1 1 1 1 1 5956 1113 5243 5588 6620 6620 150;151 1938 VSEEQTQPPSPAGAGMSTAMGR 22 Oxidation (M),Phospho (STY) _VSEEQTQPPS(ph)PAGAGMSTAM(ox)GR_ VSEEQTQPPSPAGAGM(0.06)STAM(0.94)GR VSEEQT(0.001)QPPS(0.991)PAGAGMS(0.004)T(0.004)AMGR VSEEQTQPPSPAGAGM(-12.22)STAM(12.22)GR VS(-49.36)EEQT(-31.88)QPPS(26.52)PAGAGMS(-26.52)T(-26.52)AMGR 0 1 1 0 Q16666 Q16666 Q16666 IFI16 Gamma-interferon-inducible protein 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 839.046264648438 3 762.32398 2283.95011 33731.765348935 1.3672 0.0010423 100200 76.387 100200 76.388 839.045588050684 47.762 0.49656 47.762 47.541 48.038 0 50 16 4 0.990278614401535 0.00246777310651478 0.0310174190432517 0.012314 1 11053 70.572 54.266 10 27631000 8042.9 5335.7 7713.2 5715.4 14813 8664 16883 9906 6776.4 11837 7609.4 5042.6 7876.6 5892.6 14632 8590.6 16809 10245 7114.9 11375 1 1 1 1 1 1 1 1 1 1 5957 1113 5243 5588 6621 6621 150;151 1938 VSEEQTQPPSPAGAGMSTAMGR 22 Phospho (STY) _VSEEQTQPPS(ph)PAGAGMSTAMGR_ VSEEQT(0.001)QPPS(0.999)PAGAGMSTAMGR VS(-52.45)EEQT(-30.41)QPPS(30.41)PAGAGMS(-37.16)T(-36.19)AMGR 0 0 1 0 Q16666 Q16666 Q16666 IFI16 Gamma-interferon-inducible protein 16 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.716918945313 3 756.992342 2267.9552 34013.8244893403 1.414 0.0010704 100910 76.388 100910 76.389 833.714791495643 57.782 0.60001 57.782 57.393 57.993 -7.1054E-15 91 20 6 0.957835401094768 0.00621828178610996 0.243043693805552 0.0016139 1 13482 97.295 83.687 5 105860000 11393 9502.6 12635 9557.4 24221 14657 28696 17289 8987.6 24522 10786 8977 12801 9891.8 23940 14543 28455 17979 9703.9 23491 1 1 1 1 1 1 1 1 1 1 5958 1113 5243 5589 6622 6622 1938 VSEMQKLDAQVKELVLK 17 Unmodified _VSEMQKLDAQVKELVLK_ 0 0 0 2 P04843 P04843 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1437.89770507813 2 979.553176 1957.0918 NaN NaN NaN NaN NaN NaN NaN NaN 104.84 1 104.84 104.34 105.34 0 NaN NaN NaN 0.05284 1 24671 32.946 19.041 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5959 295 5244 5590 6623 6623 VSGAGFSPSSK 11 Phospho (STY) _VSGAGFS(ph)PSSK_ VSGAGFS(0.696)PS(0.288)S(0.015)K VS(-41.32)GAGFS(3.83)PS(-3.83)S(-16.52)K 0 0 1 0 Q9C0C2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 781.401000976563 2 552.242079 1102.4696 34577.7765111319 1.6131 0.00089084 414970 229.16 414970 229.16 781.403724424946 57.747 0.56997 57.747 57.393 57.963 0 45 19 3 0.835917270792709 0.00174362362791609 0.111377676672487 0.011429 1 13485 80.187 60.023 4 22607000 21403 31341 21059 30787 16725 21034 17768 24307 35122 20088 20251 29604 21174 31488 17260 21598 18512 24860 33919 19478 1 1 1 1 1 1 1 1 1 1 5960 1885 5245 5591 6624 6624 3434 VSGAQEMVSSAK 12 Phospho (STY) _VS(ph)GAQEMVSSAK_ VS(1)GAQEMVSSAK VS(72.32)GAQEMVS(-72.32)S(-75.1)AK 0 0 1 0 O60664 O60664 O60664 PLIN3 Perilipin-3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.439392089844 2 637.278335 1272.54212 33539.0962584412 2.2636 0.0014426 359600 229.16 359600 229.16 866.441004817897 66.388 0.43402 66.388 66.11 66.544 0 38 14 3 0.891902640672206 0.00113912818059272 0.061634811417046 1.4643E-05 1 15561 136.63 95.862 3 21608000 23504 10554 24748 9999.7 7380.3 25348 10977 16449 10099 16483 22245 9966.6 24642 10548 8565.1 24642 10976 17341 10002 15902 1 1 1 1 1 1 1 1 1 1 5961 152 5246 5592 6625 6625 259 VSGEEELHTGPPAPQGPLSVPQGLPTQSLASPPAR 35 Phospho (STY) _VSGEEELHTGPPAPQGPLSVPQGLPTQSLAS(ph)PPAR_ VSGEEELHTGPPAPQGPLSVPQGLPT(0.129)QS(0.023)LAS(0.848)PPAR VS(-94.6)GEEELHT(-86.61)GPPAPQGPLS(-45.72)VPQGLPT(-8.17)QS(-15.65)LAS(8.17)PPAR 0 0 1 0 Q9UPN7 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 953.991821289063 4 896.196349 3580.75629 31850.5112796146 1.72 0.0015415 63929 57.293 63931 57.295 953.991570878363 82.285 0.86116 82.285 81.682 82.543 -1.4211E-14 81 29 5 0.754311859806569 0.00170158301998302 0.0156405658742647 2.1169E-05 1 19248 105.98 90.335 6 19020000 3618 3678.4 3596.9 4522.6 3799.6 4774.9 4200.2 4202.8 4419.9 13785 3423.5 3479.7 3626.3 4596.2 3849.8 4793.6 4262.2 4653.2 4351.8 13078 1 1 1 1 1 1 1 1 1 1 5962 2214 5247 5593 6626 6626 4008 VSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 32 Phospho (STY) _VSGPDPKPGSNCS(ph)PAQSVLSEVPSVPTNGMAK_ VS(0.001)GPDPKPGS(0.012)NCS(0.987)PAQS(0.001)VLSEVPSVPTNGMAK VS(-30.71)GPDPKPGS(-19.29)NCS(19.29)PAQS(-31.7)VLS(-72.27)EVPS(-96.63)VPT(-95.73)NGMAK 0 0 1 1 P22314 P22314 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 991.755981445313 4 819.38345 3273.50469 31223.8320546396 1.7249 0.0014134 209760 171.87 209760 171.87 991.754395257196 84.889 0.40448 84.889 84.663 85.068 0 26 13 3 0.908922001428599 0.00171731875328348 0.0649695238180982 3.2311E-05 1 19845 124.17 103.86 7 8708500 4463.7 2164 3200.3 1780 3508.5 4064.9 3037 2805.7 2093.4 19068 4219.1 2042 3298 1887.8 3534.7 3992.6 3088.2 3437.7 2105.6 18020 1 1 1 1 1 1 1 1 1 1 5963 457 5248 5594 6627 6627 745;746 VSGRTSPPLLDR 12 Phospho (STY) _VSGRT(ph)SPPLLDR_ VS(0.15)GRT(0.584)S(0.266)PPLLDR VS(-5.91)GRT(3.41)S(-3.41)PPLLDR 0 0 1 1 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 536.288940429688 3 459.901053 1376.68133 42716.87818326 0.42955 0.00019755 166100 76.388 166100 76.388 536.289164824584 51.647 0.98855 51.647 51.195 52.183 0 132 33 6 0.925265731577418 0.00379258778192241 0.022502755105569 0.01429 1 11941 84.842 71.251 3 652760000 14790 11219 15566 12363 11275 13468 10028 11409 12472 1779.5 13998 10605 15574 12642 11679 13428 10334 11578 12202 1939.7 1 1 1 1 1 1 1 1 1 1 5964 2226 5249 5595 6628 6628 4837 VSGSPEQAVEENLSSYSLDR 20 Phospho (STY) _VSGS(ph)PEQAVEENLSSYSLDR_ VS(0.171)GS(0.829)PEQAVEENLSSYSLDR VS(-6.85)GS(6.85)PEQAVEENLS(-150.41)S(-152.06)Y(-151.88)S(-158.99)LDR 0 0 1 0 Q9Y6A5 Q9Y6A5 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 826.387512207031 3 749.665277 2245.974 34700.7899239448 1.4317 0.0010733 101900 76.387 101900 76.389 826.053019051859 87.774 0.73438 87.774 87.292 88.027 0 100 24 5 0.979423733087576 0.00434882641744466 0.0549221602730573 1.6182E-08 1 20418 172.32 143.18 6 42079000 4318 5163.3 4263.5 6459.6 4567 3708.7 5008 4882.4 5980.5 14237 4085.7 4884.9 4300.8 6509.2 4623.8 3881.7 5103.2 5280.9 5859.7 13518 1 1 1 1 1 1 1 1 1 1 5965 2310 5250 5596 6629 6629 4262 VSGSPEQAVEENLSSYSLDR 20 Phospho (STY) _VSGS(ph)PEQAVEENLSSYSLDR_ VS(0.016)GS(0.984)PEQAVEENLSSYSLDR VS(-17.88)GS(17.88)PEQAVEENLS(-132.86)S(-138.57)Y(-145.32)S(-127.77)LDR 0 0 1 0 Q9Y6A5 Q9Y6A5 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1239.08190917969 2 1123.99428 2245.974 28406.6895737499 1.2061 0.0013557 101940 114.58 101940 114.58 1239.07684625407 87.707 0.55939 87.707 87.378 87.938 0 31 18 3 0.972190516562622 0.000895481177784231 0.0219332577873707 1.4232E-11 1 20442 206.74 180.77 6 9993500 1942.6 6075.1 1582.7 5895.2 1833.6 1876.3 1666.1 5128.7 6646.1 38528 1836.8 5737.9 1617.1 5999.4 1848.3 2173.4 1840.4 6179.3 6346.5 36397 1 1 1 1 1 1 1 1 1 1 5966 2310 5250 5596 6630 6630 4262 VSLERLDLDLTADSQPPVFK 20 Phospho (STY) _VS(ph)LERLDLDLTADSQPPVFK_ VS(0.982)LERLDLDLT(0.012)ADS(0.005)QPPVFK VS(18.98)LERLDLDLT(-18.98)ADS(-22.84)QPPVFK 0 0 1 1 Q13263 Q13263 Q13263 TRIM28 Transcription intermediary factor 1-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 928.169677734375 3 775.057558 2322.15084 32784.8088938331 2.2603 0.0017519 197120 152.78 197120 152.78 928.166940249098 100.14 0.17146 100.14 100.06 100.23 0 17 5 5 0.622002557416739 0.00302268757733869 0.0766140269724425 0.012319 1 23377 68.231 44.505 3 91001000 23728 29003 25979 26923 37595 27499 32739 41539 27483 425770 22461 27387 26163 27780 37392 28516 33414 53952 27340 401870 1 1 1 1 1 1 1 1 1 1 5967 942 5251 5597 6631 6631 1566 VSLLGPVTTPEHQLLK 16 Phospho (STY) _VSLLGPVTT(ph)PEHQLLK_ VSLLGPVT(0.103)T(0.897)PEHQLLK VS(-64.48)LLGPVT(-9.41)T(9.41)PEHQLLK 0 0 1 0 Q9H0H5 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 757.436950683594 3 604.66041 1810.9594 36937.6995515564 2.011 0.001216 252660 152.78 252670 152.78 757.435800927293 92.073 0.42868 92.073 91.853 92.281 0 39 14 3 0.906174844690213 0.00209322510542131 0.0402913951537385 7.0575E-07 1 21434 148.52 112.13 3 12646000 5607.5 7722.8 6483.3 7679.7 5068.3 4747 5826.2 6765.6 7800.6 17180 5309.4 7295.2 6462 7840.8 5239.5 4946.7 5948.2 7225.9 7613.2 16334 1 1 1 1 1 1 1 1 1 1 5968 1905 5252 5598 6632 6632 4761 VSMPDVELNLKSPK 14 Phospho (STY) _VSMPDVELNLKS(ph)PK_ VSMPDVELNLKS(1)PK VS(-92.19)MPDVELNLKS(92.19)PK 0 0 1 1 Q09666 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 775.768249511719 3 546.272046 1635.79431 35888.5897335579 1.8124 0.00099004 419500 229.16 419510 229.16 775.76942378881 86.645 0.57928 86.645 86.419 86.998 0 51 19 4 0.974775991018873 0.00280154143082729 0.0491154492950843 6.4229E-05 1 20212 125.88 93.497 2 13284000 18435 13906 22816 14241 4578.2 23467 6253.9 15999 13782 23245 17460 13139 22502 14750 5753.6 23061 6491.6 17038 13280 22258 1 1 1 1 1 1 1 1 1 1 5969 896 5253 5599 6633 6633 1478 VSNGSPSLER 10 Phospho (STY) _VSNGS(ph)PSLER_ VS(0.045)NGS(0.795)PS(0.16)LER VS(-12.5)NGS(6.96)PS(-6.96)LER 0 0 1 0 P46527 P46527 P46527 CDKN1B Cyclin-dependent kinase inhibitor 1B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.832641601563 2 563.250435 1124.48632 37284.2649890413 2.0713 0.0011667 203430 114.58 203430 114.58 677.831889636427 38.338 0.51691 38.338 38.093 38.61 0 36 17 3 0.801102120637262 0.0007488632007083 0.0175259594641725 0.012585 1 8685 77.527 62.853 3 10674000 18647 15369 18031 16301 23151 19180 23312 19731 16470 4519.2 17642 14524 18254 16726 23187 19112 23535 19907 16541 4712 1 1 1 1 1 1 1 1 1 1 5970 611 5254 5600 6634 6634 1008 VSNLQVSPK 9 Phospho (STY) _VSNLQVS(ph)PK_ VSNLQVS(1)PK VS(-43.04)NLQVS(43.04)PK 0 0 1 0 O00443 O00443 O00443 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 503.953491210938 3 351.177635 1050.51108 44088.0566589519 0.56953 0.00020001 435040 152.78 435040 152.78 503.952997738879 59.038 0.52149 59.038 58.786 59.307 0 32 17 2 0.437650686496257 0.00128750311100694 0.0378577815491662 0.024316 1 13839 53.947 34.816 2 8729700 9578.9 10250 9262.7 9586.2 8259.6 10258 8037.8 8273.6 10872 820.83 9062.9 9678.8 9332.5 9894.1 8440.6 10229 8270 8400.6 10607 964.39 1 1 1 1 1 1 1 1 1 1 5971 48 5255 5601 6635 6635 73 VSPAAAQLADTLFSK 15 Phospho (STY) _VS(ph)PAAAQLADTLFSK_ VS(1)PAAAQLADTLFSK VS(66.04)PAAAQLADT(-66.04)LFS(-96.41)K 0 0 1 0 O14686 O14686 O14686 KMT2D Histone-lysine N-methyltransferase 2D MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.37548828125 3 533.599039 1597.77529 37680.4551567915 1.1571 0.00061744 286310 152.78 286310 152.78 686.374842698401 101.23 0.1991 101.23 101.13 101.33 0 18 6 5 0.985407233062966 0.000734296018473055 0.0187630953113435 0.0002328 1 23773 101.17 79.611 3 48391000 7852.5 6026.2 6280.2 5113.6 5285.2 6402.6 5898.2 6761.8 7492.5 21080 7424.6 5687.6 6403.1 5326.9 5432.4 6404.3 6018.1 7403.9 7325.2 20006 1 1 1 1 1 1 1 1 1 1 5972 63 5256 5602 6636 6636 107 VSPAHRSPTVLCQK 14 2 Phospho (STY) _VS(ph)PAHRSPT(ph)VLCQK_ VS(1)PAHRS(0.202)PT(0.798)VLCQK VS(73.02)PAHRS(-5.96)PT(5.96)VLCQK 0 0 2 1 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 733.704223632813 3 580.594845 1738.76271 35954.6007091907 1.6301 0.00094642 263140 152.77 263140 152.78 733.369849812219 47.844 0.46523 47.844 47.629 48.094 0 56 15 5 0.916060081610358 0.00413436298441288 0.0807026345466719 1.0707E-06 1 11083 159.01 133.81 3 41351000 37320 41215 37888 40240 17624 39365 20618 34340 41367 10914 35316 38929 37876 41363 19144 39454 21412 34969 39936 11072 1 1 1 1 1 1 1 1 1 1 5973 1204 5257 5603 6637 6637 2119;4610 VSPAHSPPENGLDK 14 2 Phospho (STY) _VS(ph)PAHS(ph)PPENGLDK_ VS(1)PAHS(1)PPENGLDK VS(157.98)PAHS(157.98)PPENGLDK 0 0 2 0 Q04726 Q04726 Q04726 TLE3 Transducin-like enhancer protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.329162597656 3 536.554932 1606.64297 37215.2892737632 1.3225 0.00070958 284730 152.77 284730 152.77 689.663083517998 52.117 1.0655 52.117 51.747 52.812 0 110 36 4 0.982329558357402 0.00104959055905145 0.0134833178710703 5.9987E-07 1 12090 157.98 116.58 1 25818000 12275 11490 13370 13302 15052 12279 14456 14394 12542 7000.7 11619 10865 13420 13531 15165 12393 14691 14568 12457 6925.1 1 1 1 1 1 1 1 1 1 1 5974 864 5258 5604 6638 6638 1404;1405 VSPATPK 7 Phospho (STY) _VS(ph)PATPK_ VS(1)PATPK VS(38.54)PAT(-38.54)PK 0 0 1 0 Q9HAH7 Q9HAH7 Q9HAH7 FBRS Probable fibrosin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 619.352661132813 2 390.188587 778.36262 40921.7170876435 1.7104 0.00066737 587320 229.16 587320 229.16 619.352629036976 42.985 0.56342 42.985 42.708 43.272 0 29 18 2 0.979535584605237 0.00113005613991586 0.0163674794968701 0.0014224 1 9825 116.73 91.558 2 24263000 24110 33827 22470 29762 26337 22604 27850 26975 34573 4877.2 22808 31932 22770 30692 26526 23041 28460 27035 33828 5216.8 1 1 1 1 1 1 1 1 1 1 5975 1970 5259 5605 6639 6639 3586 VSPDFTQESR 10 Phospho (STY) _VS(ph)PDFTQESR_ VS(1)PDFTQESR VS(47.94)PDFT(-47.94)QES(-93.83)R 0 0 1 0 Q6N021 Q6N021 Q6N021 TET2 Methylcytosine dioxygenase TET2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.844665527344 2 623.261 1244.50745 37199.1430420495 2.0874 0.001301 183840 114.58 183840 114.58 737.842932148258 53.488 0.39175 53.488 53.353 53.744 0 22 12 2 0.845279179508833 0.00045092190169167 0.00831616879019896 2.8496E-06 1 12483 149.58 117.17 3 13045000 13957 13953 14310 14814 17399 15001 16446 16809 16035 8577.5 13209 13186 14425 15161 17460 15067 16775 17049 15839 8465.8 1 1 1 1 1 1 1 1 1 1 5976 1247 5260 5606 6640 6640 2209 VSPENLVDK 9 Phospho (STY) _VS(ph)PENLVDK_ VS(1)PENLVDK VS(182.49)PENLVDK 0 0 1 0 O75376 O75376 O75376 NCOR1 Nuclear receptor corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.916687011719 2 540.752279 1079.49001 36253.2489161767 2.3856 0.00129 423790 229.16 423790 229.16 769.914989742252 72.367 0.7919 72.367 71.986 72.778 1.4211E-14 91 26 5 0.998218449304388 0.00456175109579695 0.0532018450517077 4.65E-09 1 16961 182.49 99.063 1 83862000 55729 48451 55419 46206 51148 53502 49490 50389 50364 15385 52733 45757 55766 47697 52135 53292 50480 51128 49657 15653 1 1 1 1 1 1 1 1 1 1 5977 180 5261 5607 6641 6641 315 VSPGLPSPNLENGAPAVGPVQPR 23 Phospho (STY) _VS(ph)PGLPSPNLENGAPAVGPVQPR_ VS(0.581)PGLPS(0.419)PNLENGAPAVGPVQPR VS(1.42)PGLPS(-1.42)PNLENGAPAVGPVQPR 0 0 1 0 Q9UGP4 Q9UGP4 Q9UGP4 LIMD1 LIM domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.115173339844 3 778.393163 2332.15766 33254.5241609596 1.1498 0.00089499 98131 76.385 98132 76.385 855.445275457286 79.899 0.63115 79.899 79.589 80.22 0 78 21 5 0.751664990080179 0.00470150997033287 0.0431395611638604 0.0093739 1 18706 77.065 65.433 2 30017000 6115.1 7910.1 7136.7 7821.7 6968.8 6933.3 7434.2 6571.6 8305.8 27649 5790.3 7471.9 7126.3 8022.2 7089.3 7036.8 7568.9 7438.9 8158.4 26187 1 1 1 1 1 1 1 1 1 1 5978 2139 5262 5608 6642 6642 3850 VSPHHPAPTPNPR 13 Phospho (STY) _VS(ph)PHHPAPTPNPR_ VS(1)PHHPAPTPNPR VS(50.49)PHHPAPT(-50.49)PNPR 0 0 1 0 Q01196 Q01196 Q01196 RUNX1 Runt-related transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 572.625305175781 3 496.236547 1485.68781 42378.5757138141 1.4942 0.00074149 153930 76.388 153940 76.389 572.624308366136 29.159 0.78898 29.159 28.581 29.37 -3.5527E-15 58 26 4 0.487572012061311 0.00551525706380943 0.0722209268575097 0.0084463 1 6498 77.191 63.034 2 26003000 28922 16301 29249 19748 24813 27824 23312 22477 20657 4389.2 27369 15419 29376 20196 25418 27470 23729 22886 20495 4653.2 1 1 1 1 1 1 1 1 1 1 5979 834 5263 5609 6643 6643 1347 VSPLNLSSVTP 11 Phospho (STY) _VSPLNLSSVT(ph)P_ VSPLNLSSVT(1)P VS(-126.41)PLNLS(-76.86)S(-52.65)VT(52.65)P 0 0 1 0 Q9UJX2 Q9UJX2 Q9UJX2 CDC23 Cell division cycle protein 23 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 711.8759765625 2 597.294311 1192.57407 37785.3895625144 1.8271 0.0010913 191830 114.58 191840 114.58 711.875501082231 90.839 0.83122 90.839 90.364 91.195 0 77 28 4 0.947518740052371 0.00105324526128562 0.0414136534632575 2.2549E-07 1 21124 171.26 159.35 4 20799000 6878.3 4835.6 6388.9 5592.5 4889.5 7097 6104.2 6740.3 6476.3 15134 6506.8 4572.3 6445.4 5720.2 5067.9 7070.6 6165.4 7230.9 6374.4 14406 1 1 1 1 1 1 1 1 1 1 5980 2162 5264 5610 6644 6644 3894;4811 VSPPASPGP 9 Phospho (STY) _VS(ph)PPASPGP_ VS(1)PPASPGP VS(40.21)PPAS(-40.21)PGP 0 0 1 0 Q9Y4U1 Q9Y4U1 Q9Y4U1 MMACHC Methylmalonic aciduria and homocystinuria type C protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 559.279174804688 2 444.696776 887.378999 42072.6555715817 1.0981 0.00048834 257660 114.58 257660 114.58 559.278332391971 52.845 0.97228 52.845 52.011 52.984 0 71 33 3 0.802024469702213 0.00129929324746044 0.0295634147926087 0.0003456 1 12268 120.12 116.27 2 14794000 13393 11534 14102 12093 10898 16467 10673 12073 10663 3585.8 12675 10899 14119 12453 11245 16262 10874 12389 10521 3655.9 1 1 1 1 1 1 1 1 1 1 5981 2286 5265 5611 6645 6645 4226 VSPSFSAELK 10 Phospho (STY) _VS(ph)PSFSAELK_ VS(0.968)PS(0.032)FSAELK VS(14.85)PS(-14.85)FS(-42.2)AELK 0 0 1 0 Q13416 Q13416 Q13416 ORC2 Origin recognition complex subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.932861328125 2 572.767929 1143.52131 36738.1501774378 2.4152 0.0013834 400100 229.16 400100 229.16 801.930923309583 78.044 0.39519 78.044 77.923 78.318 0 31 13 3 0.405427947623053 0.000782794109327844 0.0270720324927292 0.00094623 1 18298 100.38 44.976 3 10531000 21553 21950 24489 20597 40148 20887 34603 25806 25088 17235 20406 20728 24671 21235 39731 21017 35228 26214 25158 16826 1 1 1 1 1 1 1 1 1 1 5982 949 5266 5612 6646 6646 1578 VSPSPTTYR 9 Phospho (STY) _VS(ph)PSPTTYR_ VS(0.999)PS(0.001)PTTYR VS(29.65)PS(-29.65)PT(-83.68)T(-102.67)Y(-141.74)R 0 0 1 0 P11274 P11274 P11274 BCR Breakpoint cluster region protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 658.826538085938 2 544.244621 1086.47469 38044.4509176664 1.9241 0.0010472 210530 114.58 210530 114.58 658.82522063512 42.67 0.86474 42.67 42.194 43.059 0 71 29 3 0.911985780286172 0.00229728049311226 0.0436236709856618 5.0678E-09 1 9756 179.72 144.57 5 28950000 17452 36840 16507 38354 29339 15416 29405 28335 38620 16633 16511 34810 16833 38920 29025 16669 30181 28423 37716 16318 1 1 1 1 1 1 1 1 1 1 5983 362 5267 5613 6647 6647 590 VSPSTSYTPSR 11 Phospho (STY) _VSPSTSYT(ph)PSR_ VSPS(0.001)T(0.002)S(0.006)YT(0.966)PS(0.025)R VS(-44.97)PS(-32.83)T(-26.86)S(-21.82)Y(-34.99)T(15.82)PS(-15.82)R 0 0 1 0 Q9BTE3 Q9BTE3 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.858276367188 2 631.27665 1260.53875 36503.0385400268 1.3404 0.00084615 181510 114.58 181510 114.58 745.856481513291 40.742 0.43118 40.742 40.48 40.911 0 27 14 2 0.515623196075085 0.000724546295706674 0.00722743277262267 0.018211 2 9290 74.216 49.834 7 16108000 72900 42241 71836 40933 35800 76899 42473 53616 46294 12669 68978 39896 71967 42687 38556 75207 43018 55065 45516 13170 2 2 2 2 2 2 2 2 2 2 5984 1823 5268 5614 6648;6649 6648 3341;4754 VSPSTSYTPSR 11 Phospho (STY) _VS(ph)PSTSYTPSR_ VS(0.966)PS(0.031)T(0.003)SYTPSR VS(14.89)PS(-14.89)T(-25.58)S(-47.2)Y(-112.51)T(-81.87)PS(-122.56)R 0 0 1 0 Q9BTE3 Q9BTE3 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.859130859375 2 631.27665 1260.53875 35236.9441580201 1.7192 0.0010853 181500 114.58 181510 114.58 745.858056117573 42.879 0.84512 42.879 42.337 43.182 0 116 28 7 0.823267609202458 0.00449536076897459 0.0474622497784379 1.2471E-10 1 9777 206.21 167.85 7 172310000 89267 47083 82410 49232 57919 91717 56360 64838 51727 7475.5 84444 44490 83074 51102 60196 89714 57317 66305 51235 8539.7 1 1 1 1 1 1 1 1 1 1 5985 1823 5268 5614 6650 6650 3341;4754 VSQGSAESLSPSFR 14 Phospho (STY) _VSQGSAESLS(ph)PSFR_ VSQGS(0.002)AES(0.131)LS(0.806)PS(0.061)FR VS(-45.2)QGS(-27.07)AES(-7.89)LS(7.89)PS(-11.2)FR 0 0 1 0 Q86YV5 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 881.428283691406 2 766.343052 1530.67155 32872.179435476 1.4987 0.0011485 149520 114.58 149520 114.58 881.426143475233 59.062 0.54928 59.062 58.698 59.247 0 29 18 2 0.655099863038934 0.000757489691577181 0.0354568638134766 0.034369 1 13838 59.359 43.416 5 12281000 16261 6591.6 17367 6781.3 9389.4 16913 7733.6 13371 6544.3 29102 15391 6227.9 17323 7114 9974.9 16511 7919.1 14426 6507.7 27712 1 1 1 1 1 1 1 1 1 1 5986 1405 5269 5615 6651 6651 2557 VSRSPGASR 9 Phospho (STY) _VSRS(ph)PGASR_ VS(0.253)RS(0.746)PGAS(0.001)R VS(-4.7)RS(4.7)PGAS(-31.52)R 0 0 1 1 Q12872 Q12872 Q12872 SFSWAP Splicing factor, suppressor of white-apricot homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 613.317199707031 2 498.734755 995.454958 39150.2289493648 1.9235 0.00095932 229740 114.58 229750 114.58 613.316394421822 22.789 0.20222 22.789 22.689 22.891 0 13 6 3 0.990862474249252 0.00176085476273381 0.0665207652633316 0.039413 1 5126 52.549 25.548 3 3011000 3006.2 1889.8 2784.9 2772 2335.9 2532.3 2338.5 2289.6 2398.2 1995.7 2843.8 1790.2 2811.5 2788.5 2397.1 2549.7 2381.9 2366.2 2363.7 1932.1 1 1 1 1 1 1 1 1 1 1 5987 908 5270 5616 6652 6652 1495 VSRTPEPK 8 Phospho (STY) _VSRT(ph)PEPK_ VS(0.287)RT(0.713)PEPK VS(-3.96)RT(3.96)PEPK 0 0 1 1 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 484.605773925781 3 331.830347 992.469211 44707.4798444465 1.1806 0.00039175 460400 152.78 460400 152.78 484.605814385849 32.664 0.78432 32.664 32.384 33.168 0 73 23 5 0.956931837951973 0.00352932366448536 0.0462726400941686 0.013576 1 7280 88.155 50.428 2 120610000 18808 30205 19602 29984 21433 18251 20313 22171 28997 2662.2 17800 28533 19713 30611 21635 18872 20969 22168 28243 3019.9 1 1 1 1 1 1 1 1 1 1 5988 1436 5271 5617 6653 6653 2659;4665 VSSGFGLSK 9 Phospho (STY) _VSS(ph)GFGLSK_ VS(0.131)S(0.869)GFGLSK VS(-8.22)S(8.22)GFGLS(-54.6)K 0 0 1 0 Q8IZQ1 Q8IZQ1 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 710.388366699219 2 481.223158 960.431763 37664.3129621 2.2728 0.0010937 476210 229.16 476210 229.16 710.386689419297 73.087 0.607 73.087 72.721 73.328 0 49 20 4 0.914567228465073 0.0010012717606882 0.0349807243356268 0.0024783 1 17142 97.749 19.067 3 21774000 22799 15978 21402 16730 16824 21165 16749 20047 18086 9057.1 21568 15099 21574 17203 17344 21020 17089 20424 17789 8992.3 1 1 1 1 1 1 1 1 1 1 5989 1447 5272 5618 6654 6654 2684 VSSIDLEIDSLSSLLDDMTK 20 Oxidation (M),Phospho (STY) _VS(ph)SIDLEIDSLSSLLDDM(ox)TK_ VSSIDLEIDSLSSLLDDM(1)TK VS(0.499)S(0.499)IDLEIDS(0.001)LSSLLDDMTK VSSIDLEIDSLSSLLDDM(53.59)TK VS(0)S(0)IDLEIDS(-26.8)LS(-40.54)S(-43.6)LLDDMT(-50.49)K 0 1 1 0 Q15942 Q15942 Q15942 ZYX Zyxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.463195800781 3 759.68669 2276.03824 32586.7190054897 1.5243 0.001158 201100 152.78 201100 152.78 912.796269016729 102.79 0.34874 102.79 102.65 103 0 40 11 5 0.929222150501765 0.000167979334594483 0.00375719412844457 0.031741 1 24266 53.589 30.26 6 23027000 3354.9 3435.8 3638.3 3269.4 3317.8 3298.7 3505.4 5256.8 2971.7 47620 3175.6 3244.7 3643.7 3367.6 3388 3419.3 3544.6 6631.9 2954.8 44962 1 1 1 1 1 1 1 1 1 1 5990 1099 5273 5619 6655 6655 147 1909;1910 VSSIDLEIDSLSSLLDDMTK 20 Phospho (STY) _VSS(ph)IDLEIDSLSSLLDDMTK_ VS(0.133)S(0.867)IDLEIDSLSSLLDDMTK VS(-8.14)S(8.14)IDLEIDS(-123.6)LS(-145.75)S(-165.57)LLDDMT(-202.23)K 0 0 1 0 Q15942 Q15942 Q15942 ZYX Zyxin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 907.468322753906 3 754.355052 2260.04333 32576.6817911928 2.1335 0.0016094 202520 152.78 202530 152.78 907.465215549877 104.43 0.6985 104.43 104.23 104.93 0 41 24 4 0.956226002612452 0.00371661414707664 0.0682198288503571 9.1272E-13 2 24574 212.65 189.77 6 7357400 2624.8 968.9 3049.2 2550.5 1620.7 3381.2 1593.7 2751.2 2100.3 43697 2485.4 924.3 3028.5 2535.6 1729.2 3426.5 1637.4 4100.8 2050.9 41210 2 2 2 2 2 2 2 2 2 2 5991 1099 5273 5620 6656;6657 6656 1909;1910 VSSLAGFTDCHR 12 Phospho (STY) _VSS(ph)LAGFTDCHR_ VS(0.112)S(0.888)LAGFTDCHR VS(-8.98)S(8.98)LAGFT(-115.17)DCHR 0 0 1 0 Q96QT4 Q96QT4 Q96QT4 TRPM7 Transient receptor potential cation channel subfamily M member 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 553.590270996094 3 477.202514 1428.58571 42511.735923578 1.2476 0.00059537 160070 76.388 160070 76.388 553.590059256286 65.146 0.49245 65.146 64.851 65.343 0 38 16 3 0.742310754083003 0.00139324743943339 0.0518131456200275 3.9194E-07 1 15304 139.64 107.81 3 9287700 4440.7 4441.3 6165.3 5164.9 4591 5480.8 4090 4668.6 4965 1676.5 4208.5 4199.6 6088.7 5264 4745.7 5472.6 4211.3 4764.9 4861.9 1686.7 1 1 1 1 1 1 1 1 1 1 5992 1734 5274 5621 6658 6658 3184 VSSPAPMEGGEEEEELLGPK 20 Phospho (STY) _VSS(ph)PAPMEGGEEEEELLGPK_ VS(0.371)S(0.629)PAPMEGGEEEEELLGPK VS(-2.3)S(2.3)PAPMEGGEEEEELLGPK 0 0 1 0 O14497 O14497 O14497 ARID1A AT-rich interactive domain-containing protein 1A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 875.426818847656 3 722.316709 2163.9283 32916.2453468979 1.7448 0.0012603 211510 152.78 211510 152.78 875.426046196893 82.851 1.1573 82.851 82.428 83.585 0 113 39 5 0.975141471145213 0.00277875923215551 0.0321524801793141 4.2282E-05 1 19351 115.99 100.9 2 17374000 6856.3 7339.4 6492.2 8751.4 7353.7 6895.7 6085.1 9181.2 7540.6 21891 6486.4 6941.4 6566.3 8869.7 7395.1 7064.6 6294.8 9780.5 7378.5 20826 1 1 1 1 1 1 1 1 1 1 5993 57 5275 5622 6659 6659 92 VSSPLSPLSPGIKSPTIPR 19 Phospho (STY) _VSSPLSPLSPGIKS(ph)PTIPR_ VSSPLSPLSPGIKS(0.891)PT(0.109)IPR VS(-149.08)S(-137.98)PLS(-107.91)PLS(-46.29)PGIKS(9.14)PT(-9.14)IPR 0 0 1 1 Q9P2B4 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 824.807556152344 3 671.697524 2012.07074 35047.3290931366 2.0943 0.0014067 227450 152.78 227450 152.78 824.807119709501 82.987 0.49353 82.987 82.71 83.204 0 40 16 3 0.897379122468306 0.00502345884156554 0.0148332248692153 2.4128E-11 1 19393 199.94 174.43 6 26441000 9729.5 19276 9853.6 17296 11649 10139 13487 14219 19183 11640 9207 18198 9940.3 17765 11746 10555 13797 14455 18686 11290 1 1 1 1 1 1 1 1 1 1 5994 2105 5276 5623 6660 6660 3803 VSSPTKPK 8 Phospho (STY) _VSS(ph)PTKPK_ VS(0.016)S(0.983)PT(0.002)KPK VS(-17.95)S(17.95)PT(-27.84)KPK 0 0 1 1 Q8WUA4 Q8WUA4 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.654846191406 3 308.491442 922.452498 42541.787992251 1.1035 0.00034042 742850 229.16 742850 229.16 537.654610285548 40.151 0.67957 40.151 39.889 40.568 0 59 22 4 0.986237689935506 0.00802788600746852 0.0466677220828972 0.00053794 1 9115 117.52 66.428 3 157830000 87804 85316 72603 77575 48821 81317 52462 75241 92912 3826.6 83028 80551 73697 80184 51037 81272 54335 75823 89961 5344.5 1 1 1 1 1 1 1 1 1 1 5995 1562 5277 5624 6661 6661 2874 VSSPTVNTTLR 11 Phospho (STY) _VSS(ph)PTVNTTLR_ VS(0.153)S(0.846)PTVNTTLR VS(-7.41)S(7.41)PT(-34.84)VNT(-69.73)T(-77.35)LR 0 0 1 0 Q9NSK0 Q9NSK0 Q9NSK0 KLC4 Kinesin light chain 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 742.391784667969 2 627.808117 1253.60168 36648.4186247025 2.573 0.0016153 182510 114.58 182510 114.58 742.390195375781 51.259 0.35254 51.259 51.051 51.403 0 26 11 3 0.977108767893014 0.00131428705229313 0.0355857620867223 1.2007E-07 1 11900 172.86 122.77 5 14303000 15212 16382 15786 15391 16671 15854 17127 15448 14619 7865.3 14397 15470 15874 15871 16870 15881 17343 15749 14531 7763.6 1 1 1 1 1 1 1 1 1 1 5996 2029 5278 5625 6662 6662 3689 VSSPVFGATSSIK 13 Phospho (STY) _VSS(ph)PVFGATSSIK_ VS(0.061)S(0.939)PVFGATSSIK VS(-11.91)S(11.91)PVFGAT(-83.97)S(-79.43)S(-99.56)IK 0 0 1 0 Q99708 Q99708 Q99708 RBBP8 DNA endonuclease RBBP8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 909.494934082031 2 680.331425 1358.6483 33655.4560969375 1.9607 0.0013339 336840 229.16 336840 229.16 909.494781946162 76.52 0.52042 76.52 76.245 76.766 0 30 17 2 0.653313092903408 0.00255237847658547 0.129619799211508 2.0835E-11 1 17949 210.14 146.02 5 24906000 22058 20231 23341 18119 16961 27098 17765 20460 22609 64239 20877 19100 23353 18877 17604 26799 18177 22716 22102 60962 1 1 1 1 1 1 1 1 1 1 5997 1785 5279 5626 6663 6663 3293 VSSQAEDTSSSFDNLFIDR 19 Phospho (STY) _VSS(ph)QAEDTSSSFDNLFIDR_ VS(0.13)S(0.87)QAEDTSSSFDNLFIDR VS(-8.25)S(8.25)QAEDT(-97.77)S(-112.57)S(-120.31)S(-126.73)FDNLFIDR 0 0 1 0 P0CAP2;Q9BZD3 P0CAP2 P0CAP2 POLR2M;GCOM2 DNA-directed RNA polymerase II subunit GRINL1A;Putative GRINL1B complex locus protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 810.037902832031 3 733.314356 2196.92124 34423.4205523315 1.8329 0.0013441 104170 76.388 104170 76.39 810.036392118878 95.634 0.80453 95.634 95.282 96.087 0 75 27 4 0.967469634565796 0.00529881380844424 0.0907728872676063 3.9919E-11 1 22251 191.41 159.58 6 14330000 3171.3 4112.6 4728.1 3169.1 3380.7 3599.9 3764.6 4393.2 2762.9 15413 3006.7 3879.7 4655.6 3318.5 3514.8 3628.1 3786.2 4840.4 2768.7 14615 1 1 1 1 1 1 1 1 1 1 5998 349 5280 5627 6664 6664 567 VSSSPGVK 8 Phospho (STY) _VSS(ph)SPGVK_ VSS(0.5)S(0.5)PGVK VS(-30.68)S(0)S(0)PGVK 0 0 1 0 P32519 P32519 P32519 ELF1 ETS-related transcription factor Elf-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 649.860717773438 2 420.696776 839.378999 38856.7932785393 2.4942 0.0010493 544720 229.16 544730 229.16 649.85996327327 42.039 0.56906 42.039 41.711 42.281 0 63 17 4 0.919741288647786 0.00273977731655022 0.0709267596022129 0.00030123 1 9568 132.22 85.886 3 121520000 56915 24515 55303 26301 19611 46630 23899 33522 24447 8447.6 53850 23169 55351 27223 22070 45684 24136 34388 24099 8730.2 1 1 1 1 1 1 1 1 1 1 5999 528 5281 5628 6665 6665 857;858 VSSSPQKEGR 10 Phospho (STY) _VSS(ph)SPQKEGR_ VS(0.166)S(0.417)S(0.417)PQKEGR VS(-3.99)S(0)S(0)PQKEGR 0 0 1 1 Q7Z5J4 Q7Z5J4 Q7Z5J4 RAI1 Retinoic acid-induced protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 538.287841796875 3 385.511565 1153.51287 42895.2985812617 1.247 0.00048071 396290 152.78 396290 152.78 538.287135025993 28.937 0.46871 28.937 28.751 29.22 0 36 15 3 0.749359204841262 0.00211565666366801 0.0301306898864115 0.0087458 1 6447 73.219 70.23 3 9863100 12496 9461.9 12428 9601.8 12376 12561 13784 10134 10040 2502.4 11824 8939.2 12520 9897.8 12578 12433 13861 10335 10065 2590.8 1 1 1 1 1 1 1 1 1 1 6000 1348 5282 5629 6666 6666 2435;2436 VSTSSQESK 9 Phospho (STY) _VSTSS(ph)QESK_ VS(0.005)T(0.003)S(0.106)S(0.868)QES(0.019)K VS(-22.81)T(-24.75)S(-9.12)S(9.12)QES(-16.7)K 0 0 1 0 Q6PJT7 Q6PJT7 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 745.881591796875 2 516.715894 1031.41723 35922.4349640869 1.2952 0.00066927 443500 229.16 443500 229.16 745.879812651473 34.161 0.25924 34.161 33.962 34.221 0 11 8 2 1 0.000237515864436143 0.00253806180455133 0.051519 1 7667 48.822 21.568 5 22500000 20875 17848 19552 17217 23831 18474 23436 22190 19566 7975 19748 16857 19816 17737 23922 18523 23769 22354 19469 8023 1 1 1 1 1 1 1 1 1 1 6001 1271 5283 5630 6667 6667 2253 VSTTTDSPVSPAQAASPFIPLDELSSK 27 Phospho (STY) _VSTTTDSPVS(ph)PAQAASPFIPLDELSSK_ VS(0.042)T(0.042)T(0.042)T(0.123)DS(0.333)PVS(0.416)PAQAAS(0.001)PFIPLDELSSK VS(-9.91)T(-9.91)T(-9.91)T(-5.27)DS(-0.97)PVS(0.97)PAQAAS(-28.67)PFIPLDELS(-46.74)S(-46.54)K 0 0 1 0 Q96E09 Q96E09 Q96E09 FAM122A Protein FAM122A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1095.56750488281 3 942.454594 2824.34195 30023.0564060531 1.6721 0.0015759 162100 152.78 162110 152.78 1095.56590789701 100.74 0.16813 100.74 100.67 100.84 0 24 5 7 0.820667941202933 0.0021560339335827 0.0297355134549876 0.025328 1 23614 57.443 42.353 9 200050000 10141 14843 10466 14712 11147 10732 16289 15754 9920.8 108650 9597.1 14021 10538 15050 11339 11203 16159 18881 10059 102670 1 1 1 1 1 1 1 1 1 1 6002 1668 5284 5631 6668 6668 3074 VSVSPGR 7 Phospho (STY) _VSVS(ph)PGR_ VSVS(1)PGR VS(-34.11)VS(34.11)PGR 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.765655517578 2 391.183836 780.353118 43492.9515474169 0.29822 0.00011666 292910 114.58 292910 114.58 505.765624708082 36.879 0.67138 36.879 36.54 37.211 0 76 22 5 0.78619862065338 0.00222115364025948 0.0318999486136585 0.012694 1 8272 83.647 49.245 2 279400000 27157 28807 26348 26960 26263 27662 31474 27524 28237 5026.9 25695 27202 26587 27805 26727 27703 31699 27765 27999 5370.5 1 1 1 1 1 1 1 1 1 1 6003 1436 5285 5632 6669 6669 2637;2638 VTAGWPSEPGQGDLNPESPAALGQDLLEPR 30 Phospho (STY) _VTAGWPSEPGQGDLNPES(ph)PAALGQDLLEPR_ VTAGWPSEPGQGDLNPES(1)PAALGQDLLEPR VT(-64.74)AGWPS(-42.51)EPGQGDLNPES(42.51)PAALGQDLLEPR 0 0 1 0 Q92766 Q92766 Q92766 RREB1 Ras-responsive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1138.22204589844 3 1061.16611 3180.47649 29320.163435662 1.3361 0.0014178 71985 76.388 71986 76.389 1138.22175995255 100.35 0.16621 100.35 100.28 100.45 0 9 5 2 0.718073121705119 0.00257308908841906 0.0567714867515585 2.9966E-05 1 23450 127.02 112.65 3 56475000 7419.7 9703.1 8666 7606.4 6488.7 7761.7 5598.4 8775.1 7684.4 73462 7025.6 9154.2 8626.2 7940.5 6702.6 7924.1 5798.5 10976 7493.7 69376 1 1 1 1 1 1 1 1 1 1 6004 1618 5286 5633 6670 6670 2992 VTENGGSPQGIK 12 Phospho (STY) _VTENGGS(ph)PQGIK_ VTENGGS(1)PQGIK VT(-46.8)ENGGS(46.8)PQGIK 0 0 1 0 Q92766 Q92766 Q92766 RREB1 Ras-responsive element-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 862.954956054688 2 633.789924 1265.5653 33999.7429994429 2.0823 0.0013197 361580 229.16 361580 229.16 862.952843491333 48.985 0.34455 48.985 48.824 49.169 0 29 11 3 0.961954921875444 0.000657059813680277 0.010126873971175 3.1273E-07 1 11371 158.65 100.06 2 11577000 22866 15947 23125 16264 13227 22906 13493 18102 16777 9321 21638 15066 23150 16787 14014 22621 13812 18625 16414 9195.8 1 1 1 1 1 1 1 1 1 1 6005 1618 5287 5634 6671 6671 2993 VTFSEDDEIINPEDVDPSVGR 21 Unmodified _VTFSEDDEIINPEDVDPSVGR_ 0 0 0 0 Q12972 Q12972 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.087890625 3 778.364165 2332.07066 33871.1617096095 1.2833 0.00099884 98139 76.388 98140 76.389 854.750998689406 87.656 0.52781 87.656 87.349 87.877 -1.4211E-14 50 17 4 0.96607701584876 0.00328287250864348 0.0387428135428966 1.1489E-05 1 20431 133.24 115.08 1 13943000 3696.4 4048.3 4333.9 4129.4 4692.2 4427.6 4226.5 5155.2 3603.6 15580 3500.2 3824.8 4330.9 4239.8 4733.3 4463.1 4307.5 5612.3 3582.1 14790 1 1 1 1 1 1 1 1 1 1 6006 916 5288 5635 6672 6672 VTGSLETK 8 Phospho (STY) _VTGS(ph)LETK_ VT(0.005)GS(0.995)LETK VT(-23.08)GS(23.08)LET(-34.24)K 0 0 1 0 P21796 P21796 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 686.879821777344 2 457.715166 913.415778 38560.8227168882 2.2441 0.0010272 500670 229.16 500670 229.16 686.878593689515 53.485 0.36202 53.485 53.294 53.656 -7.1054E-15 23 11 3 0.444225194756174 0.000399665604992428 0.00645919605213226 0.039192 1 12479 55.806 26.657 3 13625000 17126 28395 17338 25616 18762 16579 19635 22026 28802 10099 16207 26808 17465 26326 18977 17108 20196 22187 28030 10019 1 1 1 1 1 1 1 1 1 1 6007 453 5289 5636 6673 6673 741 VTGTEGSSSTLVDYTSTSSTGGSPVR 26 Phospho (STY) _VTGTEGSSSTLVDYTSTSSTGGS(ph)PVR_ VTGTEGSSSTLVDYTSTSSTGGS(0.999)PVR VT(-104.05)GT(-92.43)EGS(-71.04)S(-63.64)S(-69.88)T(-87.77)LVDY(-88.76)T(-50.48)S(-34.98)T(-45.7)S(-33.95)S(-36.11)T(-36.14)GGS(33.95)PVR 0 0 1 0 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 948.447021484375 3 871.723631 2612.14906 32229.9750504085 1.8015 0.0015704 87628 76.387 87629 76.389 948.444922452703 63.746 0.51468 63.746 63.462 63.977 7.1054E-15 62 17 5 0.879136436500894 0.00490009868373477 0.0503698047132028 8.4693E-18 1 14943 228.21 216.78 14 49534000 4809.8 4022 3855.6 3785.9 4128.7 4474 4136.8 5501.6 3775 34241 4547.7 3798.1 3940.6 3912.7 4173.5 4531.1 4200.7 6510.4 3740.1 32369 1 1 1 1 1 1 1 1 1 1 6008 1353 5290 5637 6674 6674 2454 VTGTEGSSSTLVDYTSTSSTGGSPVRK 27 Phospho (STY) _VTGTEGSSSTLVDYTSTSSTGGS(ph)PVRK_ VTGTEGSSSTLVDYTS(0.001)T(0.004)S(0.068)S(0.303)T(0.09)GGS(0.534)PVRK VT(-219.91)GT(-212.99)EGS(-166.03)S(-151.88)S(-135.91)T(-132.32)LVDY(-143.88)T(-42.4)S(-25.89)T(-21.12)S(-8.95)S(-2.46)T(-7.72)GGS(2.46)PVRK 0 0 1 1 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1067.52954101563 3 914.421952 2740.24403 30398.379757404 1.9902 0.0018199 167070 152.77 167070 152.78 1067.53084973212 61.966 0.49828 61.966 61.71 62.209 0 79 16 6 0.991495661851197 0.00542250120959831 0.0458444421486151 2.6401E-33 1 14519 305.56 260.59 14 110860000 6611.7 9763.8 6705 7056.9 6015.1 6957.5 7692.3 9347.4 8392.1 64752 6256.7 9208.1 6740.9 7409.4 6169.3 7130.2 7768.7 11235 8250.8 61188 1 1 1 1 1 1 1 1 1 1 6009 1353 5291 5638 6675 6675 2454 VTGTEGSSSTLVDYTSTSSTGGSPVRK 27 Phospho (STY) _VTGTEGSSSTLVDYTSTSSTGGS(ph)PVRK_ VTGTEGSSSTLVDY(0.036)T(0.002)S(0.007)T(0.03)S(0.163)S(0.163)T(0.109)GGS(0.49)PVRK VT(-77.76)GT(-71.39)EGS(-48.45)S(-40.2)S(-40.2)T(-48.45)LVDY(-11.31)T(-24.99)S(-18.62)T(-12.18)S(-4.78)S(-4.78)T(-6.55)GGS(4.78)PVRK 0 0 1 1 Q7Z6E9 Q7Z6E9 Q7Z6E9 RBBP6 E3 ubiquitin-protein ligase RBBP6 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.403991699219 4 686.068283 2740.24403 34103.8906860428 1.9833 0.0013607 167010 114.58 167010 114.58 800.900566749574 61.97 0.49828 61.97 61.71 62.209 0 74 16 6 0.952559779805765 0.00373904749612958 0.0284903575092873 4.6959E-05 1 14520 123.29 102.2 14 94500000 6077.5 6156.7 5280.3 6493.3 6584.9 5844.2 5344.9 7990.6 7270.9 24698 5747.8 5818 5376.5 6636.1 6589.6 5960.3 5552.9 8676.2 7092.5 23441 1 1 1 1 1 1 1 1 1 1 6010 1353 5291 5638 6676 6676 2454 VTKNEEPSEEEIDAPKPK 18 Phospho (STY) _VTKNEEPS(ph)EEEIDAPKPK_ VTKNEEPS(1)EEEIDAPKPK VT(-79.72)KNEEPS(79.72)EEEIDAPKPK 0 0 1 2 Q9NR30 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.16455078125 4 530.750329 2118.97221 35934.8563310716 1.7149 0.00091018 431770 229.16 431770 229.16 760.164016595048 55.29 0.66719 55.29 55.016 55.683 0 88 22 6 0.95120561823992 0.00659023516556722 0.0388367671898401 2.3057E-11 1 12907 203.72 190.85 2 59530000 77391 81073 79243 78241 41731 74742 42245 69040 90603 16024 73239 76571 79229 80452 44616 75032 44301 69956 87347 16687 1 1 1 1 1 1 1 1 1 1 6011 2012 5292 5639 6677 6677 3656 VTKSPQK 7 Phospho (STY) _VTKS(ph)PQK_ VT(0.109)KS(0.891)PQK VT(-9.13)KS(9.13)PQK 0 0 1 1 Q9NVP1 Q9NVP1 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 518.979614257813 3 289.816038 866.426283 43650.9688187922 1.7804 0.000516 790720 229.16 790720 229.16 518.979040659598 38.612 0.84436 38.612 38.297 39.141 0 99 28 5 0.752760234628308 0.00604115312003869 0.098236315705286 0.010855 1 8717 73.951 13.849 2 375980000 73899 46319 73863 52717 32386 66626 25208 49267 55546 2572.1 69928 43793 73856 53961 35242 65949 26835 50169 53521 3562.2 1 1 1 1 1 1 1 1 1 1 6012 2047 5293 5640 6678 6678 3708 VTNDISPESSPGVGR 15 Phospho (STY) _VTNDISPES(ph)SPGVGR_ VT(0.017)NDIS(0.222)PES(0.743)S(0.018)PGVGR VT(-16.37)NDIS(-5.24)PES(5.24)S(-16.27)PGVGR 0 0 1 0 Q15154 Q15154 Q15154 PCM1 Pericentriolar material 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.943176269531 2 797.859067 1593.70358 33018.981185033 1.2352 0.00098551 143610 114.58 143610 114.58 912.440955940771 50.406 0.69069 50.406 50.07 50.761 -7.1054E-15 86 23 5 0.985373987268483 0.00129812755720601 0.0132297165873085 7.7943E-07 1 11672 154.43 114.16 4 118360000 17902 17848 21865 16684 14048 19535 13975 18465 21389 6611.7 16955 16854 21693 17247 14723 19452 14431 18763 20790 6653.1 1 1 1 1 1 1 1 1 1 1 6013 1062 5294 5641 6679 6679 1836 VTQHESDNENEIQIQNK 17 Phospho (STY) _VTQHES(ph)DNENEIQIQNK_ VT(0.001)QHES(0.999)DNENEIQIQNK VT(-31.94)QHES(31.94)DNENEIQIQNK 0 0 1 0 Q5VZL5 Q5VZL5 Q5VZL5 ZMYM4 Zinc finger MYM-type protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 855.752319335938 3 702.642695 2104.90626 33619.9686295942 2.2236 0.0015624 217430 152.77 217430 152.78 855.751857288104 51.257 0.72664 51.257 50.992 51.718 0 93 24 6 0.974715324978695 0.00425685230231816 0.0318489032134746 1.1329E-22 1 11893 256.53 217.96 2 58064000 14594 16676 14970 17351 12996 13981 15426 15810 18163 9360.7 13811 15757 15033 17720 13342 14205 15660 16070 17806 9180.1 1 1 1 1 1 1 1 1 1 1 6014 1216 5295 5642 6680 6680 2142 VTRSPPETAAPVEDMAR 17 Phospho (STY) _VTRS(ph)PPETAAPVEDMAR_ VT(0.095)RS(0.904)PPETAAPVEDMAR VT(-9.77)RS(9.77)PPET(-36.28)AAPVEDMAR 0 0 1 1 Q9Y3L3 Q9Y3L3 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 712.680725097656 3 636.295802 1905.86558 36877.1826946829 1.1347 0.00072201 120050 76.387 120050 76.387 712.682029533419 54.536 1.0378 54.536 53.859 54.896 0 93 35 3 0.617371597373895 0.00121552598293219 0.00409241542973614 2.8256E-05 2 12715 128.01 99.811 3 45685000 45842 40770 53484 42938 41779 47784 42691 45531 47076 17242 43407 38526 53274 44033 43106 47684 43532 46278 46263 17289 2 2 2 2 2 2 2 2 2 2 6015 2268 5296 5643 6681;6682 6682 4199 VTSFSTPPTPER 12 Phospho (STY) _VTSFSTPPT(ph)PER_ VTSFSTPPT(1)PER VT(-96.62)S(-94.13)FS(-64.26)T(-48.49)PPT(48.49)PER 0 0 1 0 Q6ICG6 Q6ICG6 Q6ICG6 KIAA0930 Uncharacterized protein KIAA0930 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 814.401611328125 2 699.818682 1397.62281 34822.554721096 1.9505 0.001365 163730 114.58 163730 114.58 814.401358733492 58.568 0.78634 58.568 58.231 59.018 7.1054E-15 58 19 4 0.985816636014091 0.00144142043648238 0.0817521799670153 3.5836E-08 1 13693 174.44 129.59 5 27160000 32021 11017 31921 11161 10124 31733 12151 17819 11636 11386 30300 10409 31885 11781 11589 30736 12257 18756 11503 11133 1 1 1 1 1 1 1 1 1 1 6016 1240 5297 5644 6683 6683 4617 VTSLETVAQFR 11 Phospho (STY) _VTS(ph)LETVAQFR_ VT(0.026)S(0.948)LET(0.026)VAQFR VT(-15.62)S(15.62)LET(-15.67)VAQFR 0 0 1 0 Q9H9J4 Q9H9J4 Q9H9J4 USP42 Ubiquitin carboxyl-terminal hydrolase 42 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 780.40673828125 2 665.823767 1329.63298 35933.1102804216 1.5167 0.0010099 172090 114.58 172090 114.58 780.405422882017 83.922 0.51458 83.922 83.643 84.157 0 46 17 4 0.979841447450183 0.00153955927368238 0.041883979468805 6.8997E-15 1 19597 229.4 172.83 3 16910000 8855.8 15697 8311.4 16026 14699 8943.4 13830 12241 16391 16944 8377.8 14831 8476.9 16321 14529 9353.8 14190 12661 16064 16238 1 1 1 1 1 1 1 1 1 1 6017 1969 5298 5645 6684 6684 3583 VTSPEKAEEAK 11 Phospho (STY) _VTS(ph)PEKAEEAK_ VT(0.194)S(0.806)PEKAEEAK VT(-6.19)S(6.19)PEKAEEAK 0 0 1 1 P56211 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.694946289063 3 423.530514 1267.56971 38938.4103898291 2.3026 0.00097523 541080 229.16 541080 229.16 652.693686762858 46.296 0.43966 46.296 46.079 46.519 0 37 14 3 0.879802634623163 0.00253864247094214 0.0469936547614766 0.0001566 1 10680 105.14 76.125 2 17732000 21708 20457 20904 20919 18233 19500 17480 21478 21860 13887 20538 19328 21061 21428 18654 19660 17950 21886 21384 13574 1 1 1 1 1 1 1 1 1 1 6018 729 5299 5646 6685 6685 1211 VTSSMSSPSMQPK 13 Phospho (STY) _VTSSMSS(ph)PSMQPK_ VT(0.008)S(0.006)S(0.005)MS(0.112)S(0.869)PSMQPK VT(-20.38)S(-21.5)S(-22.61)MS(-8.89)S(8.89)PS(-33.25)MQPK 0 0 1 0 Q13136 Q13136 Q13136 PPFIA1 Liprin-alpha-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.647521972656 3 482.871665 1445.59317 39458.3128689512 1.7468 0.00084346 316390 152.77 316390 152.78 635.647059099647 56.266 0.41674 56.266 56.067 56.484 7.1054E-15 40 13 4 0.952531250336345 0.00110478610233329 0.0215862384363532 0.00015339 1 13161 105.14 86.079 6 11314000 9139.2 8790 10013 10091 6481 9771.3 6577.1 8601.6 9758.3 4676.8 8651.3 8311.1 9989.6 10277 6789.9 9802.7 6777.4 8814.3 9493.5 4602.9 1 1 1 1 1 1 1 1 1 1 6019 928 5300 5647 6686 6686 1529 VTSSVPLPSGSTSSPGR 17 Phospho (STY) _VTSSVPLPSGSTSS(ph)PGR_ VTSSVPLPSGSTS(0.003)S(0.997)PGR VT(-144.8)S(-138.25)S(-126.65)VPLPS(-51.22)GS(-49.92)T(-50.01)S(-25.36)S(25.36)PGR 0 0 1 0 Q15036 Q15036 Q15036 SNX17 Sorting nexin-17 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 963.484924316406 2 848.401099 1694.78764 31854.1337872681 1.3636 0.0011569 135060 114.58 135060 114.58 962.982324365925 60.727 0.78539 60.727 60.282 61.067 0 80 26 4 0.98786026000834 0.00169163141400133 0.0442438515362953 1.642E-10 1 14208 183.17 145.49 8 63731000 11725 12543 11066 11928 9003.2 12762 9330.7 12900 13386 10361 11093 11846 11156 12298 9266.7 12776 9593.2 13246 13036 10054 1 1 1 1 1 1 1 1 1 1 6020 1049 5301 5648 6687 6687 1811 VVAVHLHQTVQVDDELEIK 19 Unmodified _VVAVHLHQTVQVDDELEIK_ 0 0 0 0 Q5TA45 Q5TA45 Q5TA45 CPSF3L Integrator complex subunit 11 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1315.75415039063 2 1086.58659 2171.15863 NaN NaN NaN NaN NaN NaN NaN NaN 98.436 1 98.436 97.936 98.936 0 NaN NaN NaN 0.051168 1 22841 41.052 17.817 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6021 1190 5302 5649 6688 6688 VVDYSQFQESDDADEDYGR 19 Phospho (STY) _VVDYSQFQES(ph)DDADEDYGR_ VVDYSQFQES(1)DDADEDYGR VVDY(-111)S(-91.37)QFQES(91.37)DDADEDY(-108.86)GR 0 0 1 0 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 850.0185546875 3 773.297142 2316.8696 34133.4213129775 1.5975 0.0012353 98782 76.388 98784 76.389 850.019171790509 70.675 7.6217 70.675 69.32 76.941 0 582 262 4 0.982022484048642 0.00326043546112886 0.00609597928320091 2.7613E-08 6 16517 171.06 157.47 4 63692000 35845 46017 35461 43897 39674 40747 43467 43632 46977 216920 33917 43458 35788 45151 40069 41428 44160 50190 46203 205260 6 6 6 6 6 6 6 6 6 6 6022 1913 5303 5650 6689;6690;6691;6692;6693;6694 6690 3476 VVDYSQFQESDDADEDYGR 19 Phospho (STY) _VVDYSQFQES(ph)DDADEDYGR_ VVDYSQFQES(1)DDADEDYGR VVDY(-72.51)S(-65.75)QFQES(65.75)DDADEDY(-69.04)GR 0 0 1 0 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.685485839844 3 773.297142 2316.8696 34676.9816625838 1.7987 0.0013909 98781 76.387 98783 76.389 850.019124627264 77.366 1.2927 77.366 76.941 78.234 0 63 44 2 0.924202576241919 0.000922224549507746 0.0209782174248758 6.3377E-05 1 18132 104.67 100.14 4 6930600 5318.2 4400.2 3591.2 6164.6 5765.2 3933.5 6074.8 5874.2 5230.3 22495 5025.9 4166.7 3742.6 6186.1 5725.8 4109 6145.7 6494.9 5196.6 21318 1 1 1 1 1 1 1 1 1 1 6023 1913 5303 5650 6695 6695 3476 VVDYSQFQESDDADEDYGR 19 Phospho (STY) _VVDYSQFQES(ph)DDADEDYGR_ VVDYSQFQES(1)DDADEDYGR VVDY(-98.47)S(-91.44)QFQES(91.44)DDADEDY(-97.87)GR 0 0 1 0 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.688293457031 3 773.297142 2316.8696 NaN NaN NaN NaN NaN NaN NaN NaN 75.399 1 75.399 74.899 75.899 0 NaN NaN NaN 2.8903E-08 1 17694 145.55 131.08 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6024 1913 5303 5650 6696 6696 3476 VVDYSQFQESDDADEDYGR 19 Phospho (STY) _VVDYSQFQES(ph)DDADEDYGR_ VVDYSQFQES(1)DDADEDYGR VVDY(-104.97)S(-94.41)QFQES(85.87)DDADEDY(-85.87)GR 0 0 1 0 Q9H1E3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 849.684936523438 3 773.297142 2316.8696 NaN NaN NaN NaN NaN NaN NaN NaN 76.24 1 76.24 75.74 76.74 0 NaN NaN NaN 5.0306E-06 1 17888 136.59 125.78 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6025 1913 5303 5650 6697 6697 3476 VVGGSLR 7 Phospho (STY) _VVGGS(ph)LR_ VVGGS(1)LR VVGGS(89.54)LR 0 0 1 0 P18031 P18031 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 498.776031494141 2 384.194203 766.373854 44551.0808243181 -0.062063 -2.3844E-05 298240 114.58 298240 114.58 498.775936557287 48.367 1.3006 48.367 48.038 49.338 0 115 44 5 0.960742076768453 0.00336633300924776 0.0497023353878342 0.0092599 1 11172 89.542 24.068 1 328440000 16603 38627 15489 39816 19809 15271 18695 25151 40274 3210.4 15706 36496 15711 40415 19852 16533 19674 24942 38823 3605 1 1 1 1 1 1 1 1 1 1 6026 425 5304 5651 6698 6698 685 VVGSMPTAGSAGSVPENLNLFPEPGSK 27 Phospho (STY) _VVGSMPTAGSAGS(ph)VPENLNLFPEPGSK_ VVGS(0.001)MPT(0.008)AGS(0.17)AGS(0.821)VPENLNLFPEPGSK VVGS(-32.09)MPT(-19.88)AGS(-6.83)AGS(6.83)VPENLNLFPEPGS(-60.38)K 0 0 1 0 Q8WU79 Q8WU79 Q8WU79 SMAP2 Stromal membrane-associated protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.152465820313 4 681.325301 2721.2721 33622.1885070585 1.8066 0.0012309 168170 114.58 168170 114.58 796.4049065451 99.614 0.31314 99.614 99.494 99.807 0 20 10 3 0.929196806001345 0.00269211085378357 0.0123758927687298 0.0037129 1 23168 90.98 70.089 5 34440000 6157.6 7518.7 7872.2 8664.1 6952.4 8795.4 6944.9 10295 8907.6 38539 5833.1 7109.2 7817 8828.2 7111.4 8901.6 7123.4 11429 8705.8 36528 1 1 1 1 1 1 1 1 1 1 6027 1560 5305 5652 6699 6699 2870 VVIKLSPQACSFTK 14 Phospho (STY) _VVIKLS(ph)PQACSFTK_ VVIKLS(1)PQACSFTK VVIKLS(41.92)PQACS(-41.92)FT(-69.34)K 0 0 1 1 Q5VUA4 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 782.448791503906 3 553.284286 1656.83103 35612.3127807255 1.8682 0.0010337 414190 229.16 414190 229.16 782.782305326026 82.807 0.48592 82.807 82.514 83 0 48 16 4 0.980214490827142 0.0021972645729533 0.0346758618758629 7.2587E-07 1 19350 145.02 121.54 3 18849000 17953 17635 19691 18961 6989.2 17661 6917 14797 18605 11701 16995 16667 19572 19367 7852.7 17747 7364.5 15306 17862 11361 1 1 1 1 1 1 1 1 1 1 6028 1204 5306 5653 6700 6700 2120 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 Phospho (STY) _VVLGDGVQLPPGDYSTTPGGTLFSTT(ph)PGGTR_ VVLGDGVQLPPGDYSTT(0.001)PGGT(0.017)LFS(0.253)T(0.164)T(0.523)PGGT(0.042)R VVLGDGVQLPPGDY(-40.07)S(-39.56)T(-35.72)T(-29.94)PGGT(-14.97)LFS(-3.14)T(-5.03)T(3.14)PGGT(-10.92)R 0 0 1 0 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 840.173034667969 4 782.630045 3126.49107 34014.5697115407 1.7352 0.0013581 73202 57.29 73204 57.292 840.171193446337 99.993 0.72666 99.993 99.75 100.48 1.4211E-14 106 25 7 0.929013262386486 0.00454311648195896 0.125873487642675 0.0059068 1 23271 90.036 76.14 9 63414000 5588.6 4798.3 5169 6906.9 7181.5 7000.3 5511.4 6523.8 5794.8 35308 5286.7 4544.8 5250.5 6964.6 7145.6 7073.1 5698.1 7626.2 5705.7 33398 1 1 1 1 1 1 1 1 1 1 6029 964 5307 5654 6701 6701 1635;4544;4545;4546 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 2 Phospho (STY) _VVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR_ VVLGDGVQLPPGDY(0.045)S(0.054)T(0.064)T(0.837)PGGTLFS(0.003)T(0.039)T(0.956)PGGT(0.002)R VVLGDGVQLPPGDY(-12.67)S(-11.99)T(-11.2)T(11.2)PGGT(-38.46)LFS(-26.23)T(-13.94)T(13.94)PGGT(-27.67)R 0 0 2 0 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1146.88439941406 3 1069.82641 3206.45741 29400.9112516798 1.22 0.0013052 71403 76.389 71405 76.39 1146.55026918287 100.59 1.1026 100.59 100.2 101.3 0 113 38 4 0.927417561476691 0.00256062248354925 0.072464061829734 1.8754E-05 1 23468 131.01 113.48 36 38014000 5419.6 4678.6 6491.6 5290 4856.4 5595.4 4263 7383.4 7812.7 81159 5132.4 4423.2 6453.9 5399.2 5019.8 5770.1 4465.1 9782.2 7558.3 76592 1 1 1 1 1 1 1 1 1 1 6030 964 5307 5655 6702 6702 1635;4544;4545;4546 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 2 Phospho (STY) _VVLGDGVQLPPGDYSTT(ph)PGGTLFS(ph)TTPGGTR_ VVLGDGVQLPPGDY(0.18)S(0.172)T(0.172)T(0.457)PGGT(0.199)LFS(0.327)T(0.251)T(0.195)PGGT(0.047)R VVLGDGVQLPPGDY(-4.38)S(-4.99)T(-4.99)T(4.38)PGGT(-2.17)LFS(1.55)T(-1.55)T(-3.04)PGGT(-10.09)R 0 0 2 0 Q13541 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 860.164611816406 4 802.621628 3206.45741 34461.2644525205 1.1325 0.00090901 71380 57.291 71381 57.292 860.163533788096 101.07 0.63102 101.07 100.84 101.47 0 35 21 2 0.683507985425832 0.00187823686968285 0.0856539935217275 0.020705 1 23731 59.678 42.031 36 24707000 5065.3 6331.8 4891.4 5273.8 4353.3 3878.3 4987.3 5704.6 6602.4 27237 4792.4 5975.4 4930 5457.1 4460 4023.9 5090.5 6472 6446.1 25779 1 1 1 1 1 1 1 1 1 1 6031 964 5307 5655 6703 6703 1635;4544;4545;4546 VVNTDHGSPEQLQIPVTDSGR 21 Phospho (STY) _VVNTDHGS(ph)PEQLQIPVTDSGR_ VVNTDHGS(1)PEQLQIPVTDSGR VVNT(-37.56)DHGS(37.56)PEQLQIPVT(-140.13)DS(-159.06)GR 0 0 1 0 Q6IQ49 Q6IQ49 Q6IQ49 SDE2 Protein SDE2 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 853.755126953125 3 777.032183 2328.07472 32663.8213605828 1.099 0.00085398 98307 76.387 98308 76.388 853.753807199733 65.675 0.67572 65.675 65.343 66.019 0 81 22 5 0.989935034569759 0.0125018754382433 0.17710063093923 2.2878E-12 1 15422 210.43 170.77 4 57368000 12704 10384 16285 15246 9675.1 13344 10609 14899 13514 12863 12035 9837.3 16113 15327 10225 13504 10834 15273 13211 12457 1 1 1 1 1 1 1 1 1 1 6032 1242 5308 5656 6704 6704 2187 VVPEDGSPEKR 11 Phospho (STY) _VVPEDGS(ph)PEKR_ VVPEDGS(1)PEKR VVPEDGS(74.65)PEKR 0 0 1 1 Q02040 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 584.64453125 3 431.534258 1291.58095 40984.2442146281 1.6046 0.00069242 354030 152.78 354030 152.78 584.643812811268 42.8 0.8745 42.8 42.425 43.299 -7.1054E-15 102 29 5 0.598120304467059 0.00418668099981241 0.0275191908174863 0.009938 1 9749 74.649 57.43 1 177840000 41605 33938 41811 36599 34371 36473 35543 33835 36282 4620.5 39369 32075 42000 37414 35337 36540 36144 34180 35768 5133.8 1 1 1 1 1 1 1 1 1 1 6033 847 5309 5657 6705 6705 1368 VVPQQITHTSPR 12 Phospho (STY) _VVPQQITHTS(ph)PR_ VVPQQIT(0.004)HT(0.365)S(0.631)PR VVPQQIT(-21.65)HT(-2.38)S(2.38)PR 0 0 1 0 Q9H0E3 Q9H0E3 Q9H0E3 SAP130 Histone deacetylase complex subunit SAP130 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 558.298461914063 3 481.576569 1441.70788 41931.1298566384 0.55013 0.00026493 158620 76.388 158620 76.388 557.964491946231 47.574 0.55936 47.574 47.386 47.946 7.1054E-15 58 20 4 0.862119207791835 0.00436375653344834 0.0292810137558229 0.010024 1 11033 71.241 35.134 3 56040000 16604 20334 17081 24347 14494 16328 15749 17923 22287 3604.4 15714 19231 17143 24624 14886 16751 16149 18025 21714 3808.8 1 1 1 1 1 1 1 1 1 1 6034 1903 5310 5658 6706 6706 3459 VVPSPLQFCAATPK 14 Phospho (STY) _VVPS(ph)PLQFCAATPK_ VVPS(1)PLQFCAATPK VVPS(90.17)PLQFCAAT(-90.17)PK 0 0 1 0 Q9Y2F5 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.040161132813 3 532.261482 1593.76262 41578.9468000285 1.68 0.00089421 287030 152.78 287030 152.78 685.037722031041 89.557 0.69942 89.557 89.141 89.841 0 38 23 3 0.930520535260514 0.000526555222455409 0.00304782407410688 0.00011294 1 20883 116.29 98.592 2 10100000 4984.5 5948 5675.1 5846.5 4263.6 6292.8 3548.2 4928.6 6165.9 9494.4 4719.2 5618.3 5656.1 6016.3 4402.4 6288.4 3717.8 5282.7 5972.9 9054.1 1 1 1 1 1 1 1 1 1 1 6035 2243 5311 5659 6707 6707 4142 VVSSTSEEEEAFTEK 15 Phospho (STY) _VVSS(ph)TSEEEEAFTEK_ VVS(0.017)S(0.485)T(0.485)S(0.014)EEEEAFTEK VVS(-14.63)S(0)T(0)S(-15.41)EEEEAFT(-157.03)EK 0 0 1 0 Q8N573 Q8N573 Q8N573 OXR1 Oxidation resistance protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 737.691528320313 3 584.58015 1750.71862 35884.0726270073 2.0446 0.0011952 261340 152.78 261350 152.78 737.691148008029 71.665 0.73336 71.665 71.314 72.047 0 87 24 5 0.978567167164227 0.00651582347759792 0.107311726605233 1.9578E-07 1 16788 166.96 63.02 5 40326000 11204 8221.6 10405 10070 7896.9 11601 7985.1 10794 10793 11573 10599 7777.2 10493 10252 8165.8 11572 8200.8 11208 10531 11147 1 1 1 1 1 1 1 1 1 1 6036 1470 5312 5660 6708 6708 2717;4680 VVSSVSSSPR 10 Phospho (STY) _VVSSVSSS(ph)PR_ VVSSVSS(0.001)S(0.999)PR VVS(-82.89)S(-71.98)VS(-52.31)S(-29.35)S(29.35)PR 0 0 1 0 P29375 P29375 P29375 KDM5A Lysine-specific demethylase 5A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.337890625 2 542.755353 1083.49615 39360.2439316517 1.5375 0.00083448 211110 114.58 211110 114.58 657.337579257333 40.248 0.43844 40.248 39.979 40.417 -7.1054E-15 31 14 3 0.71682285180363 0.00105110521507437 0.0201104163836941 3.8725E-06 1 9152 140.09 125.01 5 29384000 28846 24150 29105 24014 25238 31846 23846 25817 28946 4584.1 27297 22813 29242 24791 25825 31504 24480 26268 28345 4914 1 1 1 1 1 1 1 1 1 1 6037 500 5313 5661 6709 6709 827 VVTDTDETELAR 12 Unmodified _VVTDTDETELAR_ 0 0 0 0 P05198 P05198 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 789.916259765625 2 674.833171 1347.65179 35317.9841455111 1.3276 0.00089589 169790 114.58 169790 114.58 789.414316227098 52.2 0.42559 52.2 51.952 52.378 0 26 14 2 0.970650955751231 0.000434644910186545 0.0054995507965076 0.0021633 1 12135 100.58 64.641 1 21447000 16878 24052 17103 23060 19455 18482 19003 22038 26556 14250 15972 22716 17237 23665 19605 18801 19572 22397 25882 13929 1 1 1 1 1 1 1 1 1 1 6038 300 5314 5662 6710 6710 VVVPATEEEAEVDEFPTDGEMSAQEEDR 28 Unmodified _VVVPATEEEAEVDEFPTDGEMSAQEEDR_ 0 0 0 0 O00541 O00541 O00541 PES1 Pescadillo homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1113.51220703125 3 1036.78731 3107.3401 29275.8633353693 0.82027 0.00085044 73674 76.384 73675 76.385 1113.50771651139 81.05 0.60706 81.05 80.87 81.477 1.4211E-14 32 20 2 0.677748679141231 0.00186652869448365 0.0512779788652123 6.0495E-18 2 18981 235.57 222.77 1 15422000 4119.5 5316 4117 4883.5 4487 4602.3 4644.8 6451.5 4579.3 45193 3898.1 5019.4 4150.5 5036.1 4533.7 4734 4718.7 7761.4 4521.2 42704 2 2 2 2 2 2 2 2 2 2 6039 52 5315 5663 6711;6712 6712 VVVSPTK 7 Phospho (STY) _VVVS(ph)PTK_ VVVS(0.993)PT(0.007)K VVVS(21.39)PT(-21.39)K 0 0 1 0 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 634.3759765625 2 405.212062 808.409571 39379.9018984341 2.8018 0.0011353 565540 229.16 565540 229.16 634.374994521787 53.837 0.88508 53.837 53.475 54.36 -7.1054E-15 106 29 5 0.902906930352749 0.00485563708824506 0.0965513530736582 0.0015614 1 12501 114.5 74.954 2 712270000 79603 46206 80364 46224 46592 67646 54881 54503 45611 4694.8 75328 43649 80481 47805 49384 66693 55212 55322 45397 5682.1 1 1 1 1 1 1 1 1 1 1 6040 437 5316 5664 6713 6713 711 VVVSPTKK 8 Phospho (STY) _VVVS(ph)PTKK_ VVVS(0.937)PT(0.063)KK VVVS(11.74)PT(-11.74)KK 0 0 1 1 P19338 P19338 P19338 NCL Nucleolin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.339172363281 3 313.175454 936.504534 42336.2878884307 0.31482 9.8595E-05 731740 229.16 731740 229.16 542.339100534196 51.761 1.5297 51.761 51.136 52.665 0 191 52 6 0.996510464056866 0.00654719683408346 0.0204744185350412 0.0028938 1 11986 96.626 69.67 2 5643600000 64264 39782 66046 39834 39576 50384 45218 48447 36803 1146 60817 37581 66089 41067 41796 50009 45526 48706 36670 2200.3 1 1 1 1 1 1 1 1 1 1 6041 437 5317 5665 6714 6714 711 VWAPSCQRRR 10 Unmodified _VWAPSCQRRR_ 0 0 0 2 P32745 P32745 P32745 SSTR3 Somatostatin receptor type 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 386.965148925781 4 329.675466 1314.67276 51615.3155171974 0.40604 0.00013386 173780 57.289 173780 57.29 386.964674074514 20.186 0.26978 20.186 20.02 20.29 0 24 8 4 0.703789631729853 0.00628147828748049 0.127632499856279 0.053972 1 4589 17.864 0.1636 1 1571400 1935.3 2554.5 2178.5 2101 2560.1 1915.6 2331.8 2315.6 2571.2 1986.4 1832.2 2410.6 2183.9 2182 2572.4 1937.2 2391.1 2367.1 2526.8 1924.1 1 1 1 1 1 1 1 1 1 1 6042 529 5318 5666 6715 6715 VWDPDNPLTDR 11 Unmodified _VWDPDNPLTDR_ 0 0 0 0 O94776 O94776 O94776 MTA2 Metastasis-associated protein MTA2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 778.900329589844 2 664.317491 1326.62043 35538.8660825173 1.801 0.0011964 172480 114.58 172480 114.58 778.899133625926 76.932 0.48848 76.932 76.737 77.225 0 41 16 3 0.981090612043 0.000597453180737622 0.00925693308960763 0.00012731 1 18028 133.81 93.763 1 12047000 11227 10053 10897 11227 8965.8 10069 10412 10203 10862 17249 10623 9503.4 10970 11437 9233.4 10179 10542 10748 10699 16478 1 1 1 1 1 1 1 1 1 1 6043 216 5319 5667 6716 6716 VWGSPGGEGTGDLDEFDF 18 Unmodified _VWGSPGGEGTGDLDEFDF_ 0 0 0 0 Q13438 Q13438 Q13438 OS9 Protein OS-9 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1057.48034667969 2 942.89977 1883.78499 NaN NaN NaN NaN NaN NaN NaN NaN 101.58 1 101.58 101.08 102.08 0 NaN NaN NaN 1.2119E-08 1 23888 138.25 122.36 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6044 954 5320 5668 6717 6717 VWLDPNETNEIANANSR 17 Unmodified _VWLDPNETNEIANANSR_ 0 0 0 0 P84098 P84098 P84098 RPL19 60S ribosomal protein L19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.036437988281 3 648.313299 1941.91807 36666.3889247159 1.8782 0.0012177 117820 76.387 117830 76.388 725.034583636546 78.295 0.62587 78.295 77.895 78.521 1.4211E-14 70 21 4 0.993022710728928 0.00428426674207216 0.0947693654680222 9.7392E-11 1 18354 186.72 151.37 1 15502000 4688 5062.6 5988.8 5920.4 5874.1 5083.5 5562.4 6408.4 4775.4 10876 4440.9 4787.3 5953.6 6013 5962.7 5169.9 5655.5 6704.4 4745.2 10389 1 1 1 1 1 1 1 1 1 1 6045 812 5321 5669 6718 6718 VWSPLVTEEGK 11 Phospho (STY) _VWS(ph)PLVTEEGK_ VWS(0.998)PLVT(0.002)EEGK VWS(26.09)PLVT(-26.09)EEGK 0 0 1 0 O00151 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 891.978637695313 2 662.812868 1323.61118 33531.008251091 2.1418 0.0014196 345740 229.16 345740 229.16 891.975912034837 90.47 0.48316 90.47 90.279 90.762 -1.4211E-14 40 16 3 0.876998902384747 0.00167782880683698 0.123329019884683 4.6397E-10 1 21073 186.76 165.72 2 18146000 22398 9880 22568 8571.9 9992.7 20252 11198 15026 10331 22362 21195 9325.8 22563 9068.9 10899 19755 11317 15948 10230 21404 1 1 1 1 1 1 1 1 1 1 6046 32 5322 5670 6719 6719 55 VWSPLVTEEGKR 12 Phospho (STY) _VWS(ph)PLVTEEGKR_ VWS(1)PLVTEEGKR VWS(37.98)PLVT(-37.98)EEGKR 0 0 1 1 O00151 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 647.020568847656 3 494.244708 1479.71229 38871.8614964291 1.7015 0.00084098 309110 152.78 309110 152.78 647.020125784669 79.725 0.76982 79.725 79.362 80.132 0 104 26 5 0.97230610621108 0.00393506947071388 0.163955630107694 2.0967E-07 1 18634 159.22 133.9 2 97059000 16599 6056.3 16562 5901.1 6810.4 15799 8095.8 10290 5702.8 4532.9 15707 5720.3 16562 6227.6 7502.8 15334 8113.6 10672 5728.4 4506.4 1 1 1 1 1 1 1 1 1 1 6047 32 5323 5671 6720 6720 55 VYEDSGIPLPAESPK 15 Phospho (STY) _VYEDSGIPLPAES(ph)PK_ VYEDSGIPLPAES(1)PK VY(-98.08)EDS(-74.73)GIPLPAES(74.73)PK 0 0 1 0 Q8IXM2 Q8IXM2 Q8IXM2 BAP18 Chromatin complexes subunit BAP18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 714.373474121094 3 561.262204 1680.76478 36097.3830411131 1.8411 0.0010333 272200 152.77 272200 152.78 714.371309344765 81.266 1.2456 81.266 80.928 82.173 0 155 42 5 0.9612394003383 0.00519271843434582 0.0974871620632873 0.00010368 2 18976 115.57 94.036 3 143510000 26831 10334 32240 9699.4 12588 29847 14623 18283 10495 22367 25409 9758.6 31916 10322 13959 28915 14674 19461 10531 21485 2 2 2 2 2 2 2 2 2 2 6048 1426 5324 5672 6721;6722 6721 2598 VYQWDDPDPR 10 Unmodified _VYQWDDPDPR_ 0 0 0 0 P49327 P49327 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 760.374816894531 2 645.791109 1289.56767 35957.8516623532 1.8969 0.001225 177430 114.58 177430 114.58 760.37345114089 64.098 0.66575 64.098 63.662 64.328 0 36 22 2 0.97547176610923 0.000678367599807192 0.0326552503411733 7.9453E-06 1 15038 153.05 118.15 1 14414000 18840 19348 18686 19034 15528 18136 16958 18561 19037 14398 17827 18276 18789 19548 15967 18251 17250 19035 18696 13987 1 1 1 1 1 1 1 1 1 1 6049 636 5325 5673 6723 6723 VYQYSNSRSPSLER 14 Phospho (STY) _VYQYSNSRS(ph)PSLER_ VYQYSNS(0.02)RS(0.765)PS(0.215)LER VY(-71.49)QY(-63.54)S(-35.74)NS(-15.72)RS(5.52)PS(-5.52)LER 0 0 1 1 O60315 O60315 O60315 ZEB2 Zinc finger E-box-binding homeobox 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 665.992004394531 3 589.268352 1764.78323 39013.9362178453 1.52 0.00089566 129630 76.388 129630 76.388 665.656006896314 47.757 0.43681 47.757 47.571 48.008 0 35 14 3 0.887504704106395 0.00285301132208084 0.0548691248587501 0.0051557 1 11092 87.24 61.092 6 22834000 16093 8431 18079 9389.5 12531 18113 13715 15146 10454 23068 15236 7969.9 18025 9722.5 13058 17773 13814 16002 10453 22071 1 1 1 1 1 1 1 1 1 1 6050 142 5326 5674 6724 6724 242 VYSPYNHR 8 Phospho (STY) _VYS(ph)PYNHR_ VYS(0.999)PY(0.001)NHR VY(-45.1)S(32.42)PY(-32.42)NHR 0 0 1 0 Q9NS56 Q9NS56 Q9NS56 TOPORS E3 ubiquitin-protein ligase Topors MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 672.820251464844 2 558.237131 1114.45971 37706.0422751685 1.9469 0.0010868 205260 114.58 205260 114.58 672.818551887651 39.241 0.37128 39.241 39.022 39.393 0 23 12 2 0.977163175774962 0.00121164340937396 0.0373998475403693 0.012296 1 8905 81.865 54.536 3 11678000 19418 13664 19059 14878 13767 20414 15333 17595 15324 4570.8 18373 12915 19151 15291 14305 20189 15532 17896 15121 4711.1 1 1 1 1 1 1 1 1 1 1 6051 2023 5327 5675 6725 6725 3675 VYTHEVVTLWYR 12 Phospho (STY) _VYT(ph)HEVVTLWYR_ VYT(1)HEVVTLWYR VY(-61.35)T(61.35)HEVVT(-81.4)LWY(-125.84)R 0 0 1 0 P06493 P06493 P06493 CDK1 Cyclin-dependent kinase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 625.651489257813 3 549.263991 1644.77014 39328.5629264659 0.82319 0.00045215 139070 76.388 139070 76.388 625.651913063324 88.095 1.0616 88.095 87.764 88.825 0 112 36 4 0.795239583024589 0.00402364608007331 0.119088557080828 5.5896E-07 1 20517 143.05 114.76 4 31215000 3656.5 5777 3360.7 4781.1 3266.4 4727.6 3658.8 4685.5 5318 6446.8 3458.8 5451.6 3400.7 4969 3327.4 4752.7 3750.9 4895.8 5176.9 6178.9 1 1 1 1 1 1 1 1 1 1 6052 312 5328 5676 6726 6726 4373 VYYSPPVAR 9 Phospho (STY) _VYYS(ph)PPVAR_ VYY(0.001)S(0.999)PPVAR VY(-38.96)Y(-32.69)S(32.69)PPVAR 0 0 1 0 O94964 O94964 O94964 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.847229003906 2 566.265357 1130.51616 38054.423819268 1.4265 0.00080777 202350 114.58 202350 114.58 680.846026212367 60.872 1.1374 60.872 60.165 61.302 0 66 38 2 0.593315300129202 0.00114868539328127 0.0372738859041665 0.0073018 1 14332 88.056 53.968 3 23805000 19666 30286 19225 24307 15233 18056 16777 21754 28908 7029.1 18608 28576 19338 25222 15727 18437 17336 21889 28009 7122.2 1 1 1 1 1 1 1 1 1 1 6053 229 5329 5677 6727 6727 397 WCNVQSTQDEFEELTMSQK 19 Oxidation (M),Phospho (STY) _WCNVQSTQDEFEELTM(ox)S(ph)QK_ WCNVQSTQDEFEELTM(1)SQK WCNVQSTQDEFEELT(0.091)MS(0.909)QK WCNVQSTQDEFEELTM(111.67)SQK WCNVQS(-63.62)T(-55.81)QDEFEELT(-10)MS(10)QK 0 1 1 0 P27707 P27707 P27707 DCK Deoxycytidine kinase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 972.771606445313 3 819.330912 2454.97091 32334.9109318855 1.6793 0.0013759 186460 152.77 186460 152.78 972.439936228908 89.026 0.61296 89.026 88.708 89.321 0 55 20 5 0.955533079044796 0.00212395420512586 0.0182558678350462 5.2609E-05 1 20745 111.67 95.973 4 6650000 3415.3 2638.4 4273.6 2901.2 4517.8 3487.3 5047.4 4598 2711.4 21556 3235 2493.9 4257.9 2972.2 4575.6 3523.8 5048.4 5218.6 2774.4 20404 1 1 1 1 1 1 1 1 1 1 6054 488 5330 5678 6728 6728 67 800 WDETPASQMGGSTPVLTPGK 20 Phospho (STY) _WDETPASQMGGS(ph)TPVLTPGK_ WDETPAS(0.006)QMGGS(0.476)T(0.476)PVLT(0.04)PGK WDET(-33.43)PAS(-18.66)QMGGS(0)T(0)PVLT(-10.72)PGK 0 0 1 0 O75533 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 867.09912109375 3 713.653655 2137.93914 33157.4523900441 2.2178 0.0015827 214070 152.77 214080 152.78 866.762499918828 81.54 0.46021 81.54 81.335 81.795 0 38 15 3 0.643517254049209 0.00176531916659421 0.0248995978205922 0.026095 1 19092 56.327 31.008 5 18659000 9313.2 9255.6 13361 9160.6 8705.7 10534 8303.1 10560 10067 19982 8827.8 8742.9 13164 9433.7 9105.5 10535 8519.4 11193 9858.2 19059 1 1 1 1 1 1 1 1 1 1 6055 190 5331 5679 6729 6729 334;4341 WDGSEEDEDNSK 12 Phospho (STY) _WDGS(ph)EEDEDNSK_ WDGS(1)EEDEDNSK WDGS(86.72)EEDEDNS(-86.72)K 0 0 1 0 O60841 O60841 O60841 EIF5B Eukaryotic translation initiation factor 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 974.916076660156 2 745.75139 1489.48823 32156.2646219971 1.6365 0.0012204 307290 229.16 307290 229.16 974.914321791764 52.439 0.7441 52.439 52.155 52.899 0 89 25 4 0.97805678946595 0.00166062100820912 0.0502871238801804 1.0696E-40 1 12168 327.79 259.27 2 45630000 30698 40848 29885 39378 20710 27216 23921 30439 42337 7430.8 29045 38580 30033 40326 21621 27877 24700 30631 40993 7701.4 1 1 1 1 1 1 1 1 1 1 6056 160 5332 5680 6730 6730 274 WDGSEEDEDNSK 12 Phospho (STY) _WDGS(ph)EEDEDNSK_ WDGS(1)EEDEDNSK WDGS(56.72)EEDEDNS(-56.72)K 0 0 1 0 O60841 O60841 O60841 EIF5B Eukaryotic translation initiation factor 5B MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 974.913879394531 2 745.75139 1489.48823 NaN NaN NaN NaN NaN NaN NaN NaN 53.569 1 53.569 53.069 54.069 0 NaN NaN NaN 5.3378E-11 1 12489 197.25 164.16 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6057 160 5332 5680 6731 6731 274 WDGSEEDEDNSKK 13 Phospho (STY) _WDGS(ph)EEDEDNSKK_ WDGS(1)EEDEDNSKK WDGS(40.85)EEDEDNS(-40.85)KK 0 0 1 1 O60841 O60841 O60841 EIF5B Eukaryotic translation initiation factor 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.698913574219 3 540.201673 1617.58319 34750.1982650684 2.7142 0.0014662 424220 229.16 424220 229.16 769.363981541438 51.181 0.86765 51.181 50.822 51.69 0 114 29 5 0.931297950200213 0.00210377071151509 0.00792757109749208 0.0041224 1 11853 91.457 37.683 2 88446000 30013 30184 29522 30868 21143 26619 22565 27669 33276 8945.3 28398 28518 29655 31584 21981 26901 23195 27983 32379 9063.4 1 1 1 1 1 1 1 1 1 1 6058 160 5333 5681 6732 6732 274 WDGSEEDEDNSKK 13 Phospho (STY) _WDGS(ph)EEDEDNSKK_ WDGS(1)EEDEDNSKK WDGS(43.63)EEDEDNS(-43.63)KK 0 0 1 1 O60841 O60841 O60841 EIF5B Eukaryotic translation initiation factor 5B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 769.366027832031 3 540.201673 1617.58319 35238.5030567029 1.4711 0.0007947 424220 229.16 424220 229.16 769.697658957976 51.892 0.97422 51.892 51.604 52.578 0 89 33 4 0.940196631856581 0.000750778262392741 0.00534983621075158 0.0002779 1 12130 101.15 67.451 2 35177000 20516 25048 21137 25119 14435 21186 17184 23107 28248 11382 19415 23662 21171 25724 15094 21456 17663 23446 27403 11253 1 1 1 1 1 1 1 1 1 1 6059 160 5333 5681 6733 6733 274 WDQTADQTPGATPK 14 Phospho (STY) _WDQTADQTPGAT(ph)PK_ WDQTADQTPGAT(1)PK WDQT(-91.65)ADQT(-34.81)PGAT(34.81)PK 0 0 1 0 O75533 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1027.50561523438 2 798.34051 1594.66647 30536.9054909026 1.8653 0.0014891 287050 229.16 287050 229.16 1028.00133993413 58.247 0.38086 58.247 58.053 58.433 0 19 12 2 0.892600786065146 0.000492656113500791 0.0103562021191916 1.2433E-10 1 13638 202.5 172.69 3 12742000 14227 7291.5 12417 7253.9 6386.1 13222 7937.8 9530.1 7403.1 8915.1 13455 6887.8 12536 7546.3 6858.1 12957 7990.8 9971.1 7327.3 8615.2 1 1 1 1 1 1 1 1 1 1 6060 190 5334 5682 6734 6734 4340 WEYCTIPSCESSPLSTER 18 Phospho (STY) _WEYCTIPSCESSPLS(ph)TER_ WEYCTIPSCES(0.001)S(0.007)PLS(0.738)T(0.253)ER WEY(-88.2)CT(-72.04)IPS(-36.37)CES(-27.14)S(-19.99)PLS(4.65)T(-4.65)ER 0 0 1 0 CON__P06868 CON__P06868 CON__P06868 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 838.033630371094 3 761.30956 2280.90685 34250.8373507891 2.0712 0.0015768 100340 76.387 100340 76.389 838.031605241616 81.699 0.89439 81.699 81.307 82.201 0 153 30 7 0.859692418978692 0.0135840248842795 0.110981013056067 3.6032E-05 1 19096 119.43 85.421 7 141530000 17704 26988 21747 27582 20722 20551 26535 23687 30950 15596 16767 25498 21664 28171 21176 20982 26852 24108 30351 15233 1 1 1 1 1 1 1 1 1 1 + 6061 25 5335 5683 6735 6735 44 WGDAGAEYVVESTGVFTTMEK 21 Unmodified _WGDAGAEYVVESTGVFTTMEK_ 0 0 0 0 P04406 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 912.795715332031 3 759.684181 2276.03071 32206.8160876399 1.9871 0.0015096 201110 152.78 201110 152.78 912.794962009883 100.44 0.1945 100.44 100.31 100.51 0 18 6 5 0.940260231922194 0.00340430575511993 0.0332926450989611 9.0277E-08 1 23489 150.98 122.33 1 58549000 13274 13897 17352 11054 19105 15636 19165 16123 10714 65265 12576 13112 17260 11597 19278 15597 19274 18121 10930 61828 1 1 1 1 1 1 1 1 1 1 6062 293 5336 5684 6736 6736 WGPRPGSSR 9 Phospho (STY) _WGPRPGS(ph)SR_ WGPRPGS(0.632)S(0.368)R WGPRPGS(2.35)S(-2.35)R 0 0 1 1 P48634 P48634 P48634 PRRC2A Protein PRRC2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 436.88525390625 3 360.49759 1078.47094 47964.0942713179 0.017316 6.2424E-06 211890 76.388 211890 76.388 436.88515187059 40.651 0.84566 40.651 40.293 41.139 -7.1054E-15 64 28 3 0.980786113014991 0.00447011818654198 0.0682843819274161 0.0086264 1 9228 73.435 54.81 2 41973000 22096 29310 21392 28566 16784 21274 17702 23021 30429 1677.3 20906 27684 21526 29259 17330 21674 18324 23074 29485 2112.2 1 1 1 1 1 1 1 1 1 1 6063 624 5337 5685 6737 6737 1036 WGQPPSPTPVPRPPDADPNTPSPK 24 Phospho (STY) _WGQPPS(ph)PTPVPRPPDADPNTPSPK_ WGQPPS(0.735)PT(0.265)PVPRPPDADPNTPSPK WGQPPS(4.43)PT(-4.43)PVPRPPDADPNT(-72.57)PS(-90.5)PK 0 0 1 1 Q14839 Q14839 Q14839 CHD4 Chromodomain-helicase-DNA-binding protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1025.52502441406 3 872.414515 2614.22172 31382.1490490829 1.933 0.0016864 175120 152.78 175120 152.78 1025.52473622753 69.402 0.81712 69.402 68.941 69.758 0 72 27 4 0.930632288218687 0.00191890360743855 0.0242878568819549 6.1662E-08 1 16299 154.66 135.78 4 10256000 5428 5389.8 5234.5 5167.4 6361.6 5025.8 5218.3 5677.3 6997.6 21169 5135.6 5090.3 5293.6 5317 6374.8 5091.9 5415.5 6307.4 6829.1 20064 1 1 1 1 1 1 1 1 1 1 6064 1030 5338 5686 6738 6738 1770 WKEPGSGGPQNLSGPGGR 18 Phospho (STY) _WKEPGSGGPQNLS(ph)GPGGR_ WKEPGSGGPQNLS(1)GPGGR WKEPGS(-60.97)GGPQNLS(60.97)GPGGR 0 0 1 1 Q9H0W8 Q9H0W8 Q9H0W8 SMG9 Protein SMG9 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 774.061462402344 3 620.951135 1859.83157 36150.5704425809 1.8665 0.001159 246030 152.77 246040 152.78 774.059939098164 56.44 0.47802 56.44 56.186 56.664 0 55 15 5 0.840123791319134 0.00328007361938596 0.0372220618326952 0.001621 1 13175 97.068 79.58 2 22074000 23363 14323 25140 15421 24318 24927 22365 22241 18018 10383 22114 13537 25199 15919 24695 24547 22741 22727 17963 10291 1 1 1 1 1 1 1 1 1 1 6065 1909 5339 5687 6739 6739 3465 WLDDLLASPPPSGGGAR 17 Phospho (STY) _WLDDLLAS(ph)PPPSGGGAR_ WLDDLLAS(1)PPPSGGGAR WLDDLLAS(37.22)PPPS(-37.22)GGGAR 0 0 1 0 Q9C0C2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 673.671813964844 3 596.948731 1787.82436 38573.9314747569 1.6564 0.0009888 127960 76.387 127960 76.388 673.67058969464 100.73 0.36459 100.73 100.53 100.9 0 27 12 4 0.979639585001413 0.00645824128890045 0.191129730022612 0.0086726 1 23581 77.847 58.269 2 44988000 8443 10903 7942 9856.9 6923.6 7540.2 7462.9 8576.7 10862 20860 7987.3 10294 8014.5 10147 7097.1 7713.6 7663.8 9191.5 10574 19841 1 1 1 1 1 1 1 1 1 1 6066 1885 5340 5688 6740 6740 3435 WLDESDAEMELR 12 Oxidation (M),Phospho (STY) _WLDES(ph)DAEM(ox)ELR_ WLDESDAEM(1)ELR WLDES(1)DAEMELR WLDESDAEM(111.95)ELR WLDES(111.95)DAEMELR 0 1 1 0 Q9P035 Q9P035 Q9P035 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 909.898193359375 2 795.313103 1588.61165 33111.1548464951 1.4931 0.0011875 144070 114.58 144070 114.58 909.894146268628 85.248 2.2083 85.248 84.496 86.704 0 196 76 3 0.752620901618467 0.00157071345848663 0.0635374680646163 0.00015818 1 19803 111.95 83.144 1 17636000 7422.9 9750.7 6457.1 7856 7424.2 7991.8 8933 9673.8 10048 40421 7020.4 9200.4 6572.1 8184.2 7499.4 8101.8 9051.1 10856 9867.4 38285 1 1 1 1 1 1 1 1 1 1 6067 2089 5341 5689 6741 6741 220 3779 WLDESDAEMELR 12 Phospho (STY) _WLDES(ph)DAEMELR_ WLDES(1)DAEMELR WLDES(214.23)DAEMELR 0 0 1 0 Q9P035 Q9P035 Q9P035 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 901.899780273438 2 787.315646 1572.61674 33062.6700210514 2.033 0.0016006 145530 114.58 145540 114.58 901.897207661623 92.212 3.091 92.212 91.794 94.885 0 284 106 3 0.737876897822379 0.00273820397580764 0.0837950999179843 8.21E-16 4 21442 214.23 167.05 1 39441000 31657 63848 36105 57675 43912 32018 41362 49655 64905 134430 29972 60280 36191 59183 44087 33713 42870 53175 63043 127730 4 4 4 4 4 4 4 4 4 4 6068 2089 5341 5690 6742;6743;6744;6745 6742 3779 WLISPVK 7 Phospho (STY) _WLIS(ph)PVK_ WLIS(1)PVK WLIS(93.65)PVK 0 0 1 0 Q8NCD3 Q8NCD3 Q8NCD3 HJURP Holliday junction recognition protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 690.908386230469 2 461.743529 921.472505 38007.4276152947 2.3355 0.0010784 496300 229.16 496300 229.16 690.906605472581 96.411 0.69319 96.411 96.087 96.78 1.4211E-14 56 23 3 0.796779423238412 0.0033698521529 0.0747351173536092 0.0068671 1 22398 93.649 57.705 1 19356000 13154 20655 14040 18075 8025 10741 7818.5 13384 20436 16712 12451 19497 14013 18599 8507.9 11159 8314 13827 19629 16046 1 1 1 1 1 1 1 1 1 1 6069 1495 5342 5691 6746 6746 2747 WLPSSPSGVAK 11 Phospho (STY) _WLPSS(ph)PSGVAK_ WLPS(0.029)S(0.964)PS(0.007)GVAK WLPS(-15.25)S(15.25)PS(-21.35)GVAK 0 0 1 0 Q8IWI9 Q8IWI9 Q8IWI9 MGA MAX gene-associated protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.953308105469 2 604.789196 1207.56384 34614.1446010761 1.6805 0.0010163 378910 229.16 378920 229.16 833.952768843662 81.138 0.66449 81.138 80.87 81.534 0 73 22 4 0.820318474316768 0.00312725042782283 0.105402768305757 2.6219E-10 1 18968 198.33 147.06 3 58187000 27642 32857 30761 30506 19032 28351 20487 24928 31634 32684 26168 31026 30654 31431 20037 28532 21089 26122 30741 31353 1 1 1 1 1 1 1 1 1 1 6070 1416 5343 5692 6747 6747 2583 WNSPAEEGSSDCEVFSK 17 Unmodified _WNSPAEEGSSDCEVFSK_ 0 0 0 0 P34932 P34932 P34932 HSPA4 Heat shock 70 kDa protein 4 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.382446289063 3 643.60375 1927.78942 35206.908013947 2.0431 0.0013149 237370 152.78 237380 152.78 796.712997532852 72.427 0.43786 72.427 72.196 72.634 0 43 14 4 0.959692247790228 0.00147817415890243 0.0174289150597279 1.136E-10 1 17001 182.28 153.48 1 15040000 10408 12675 12447 12110 10390 11283 12378 12649 13621 14714 9856.5 11971 12395 12456 10694 11391 12538 13079 13387 14148 1 1 1 1 1 1 1 1 1 1 6071 539 5344 5693 6748 6748 WPFSGKTSPPCSPANLSR 18 Phospho (STY) _WPFSGKTS(ph)PPCSPANLSR_ WPFS(0.363)GKT(0.239)S(0.399)PPCSPANLSR WPFS(-0.41)GKT(-2.23)S(0.41)PPCS(-34.3)PANLS(-37.49)R 0 0 1 1 P49585 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 843.428405761719 3 690.315197 2067.92376 33075.8873678624 1.7097 0.0011802 221310 152.77 221310 152.78 843.424759524033 84.049 1.0544 84.049 83.47 84.524 0 129 36 6 0.984210533416971 0.00460178470853776 0.0417338296771773 0.0091808 1 19578 76.21 47.56 5 49125000 8185 11943 9385 12957 21295 9439.5 23061 16200 11349 13788 7749.6 11288 9530.3 13186 20921 9729.4 23068 16403 11695 13358 1 1 1 1 1 1 1 1 1 1 6072 641 5345 5694 6749 6749 1063 WPSLVDR 7 Phospho (STY) _WPS(ph)LVDR_ WPS(1)LVDR WPS(54.07)LVDR 0 0 1 0 Q99698 Q99698 Q99698 LYST Lysosomal-trafficking regulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 591.301879882813 2 476.718043 951.421532 40844.5039011904 1.5357 0.00073211 240360 114.58 240360 114.58 591.299920831073 81.331 0.95543 81.331 80.84 81.795 0 82 32 4 0.493962240844979 0.00122860445001082 0.0547931133961799 0.044255 1 18997 54.066 31.98 1 27052000 6998.3 5177.5 7411.7 3985.6 5306.9 8413.5 4759.8 5222.6 5356.1 5063.8 6623.7 4884.2 7412.6 4236.2 5502.5 8205.2 4887.7 5514.9 5259.5 4889 1 1 1 1 1 1 1 1 1 1 6073 1783 5346 5695 6750 6750 3288 WQPDTEEEYEDSSGNVVNKK 20 Unmodified _WQPDTEEEYEDSSGNVVNKK_ 0 0 0 1 Q12874 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1014.84704589844 3 785.352148 2353.03461 29844.1069278667 1.1791 0.00092604 291790 229.16 291790 229.16 1014.84619758532 64.648 0.46264 64.648 64.446 64.908 0 21 15 2 0.960247346571585 0.000576553660694532 0.0135085410397095 0.00856 1 15200 87.208 67.916 1 10768000 9241.6 9212.6 11042 8561.4 8986.6 11247 10232 10319 9775.1 9478 8751.7 8699.1 10992 8873.4 9258.1 11160 10343 10673 9664.5 9163.5 1 1 1 1 1 1 1 1 1 1 6074 910 5347 5696 6751 6751 WRPHSPDGPR 10 Phospho (STY) _WRPHS(ph)PDGPR_ WRPHS(1)PDGPR WRPHS(148.08)PDGPR 0 0 1 1 Q6Y7W6 Q6Y7W6 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 505.246978759766 3 428.859299 1283.55607 43822.0469554342 0.062955 2.6999E-05 178120 76.388 178120 76.388 505.24705758233 34.267 1.1294 34.267 33.934 35.064 0 102 38 4 0.907782075511272 0.00886485696749159 0.0431964998750854 1.7821E-06 1 7672 148.08 63.328 1 178980000 45934 44304 49008 42333 41702 52752 41557 42093 44173 7376.6 43477 41841 49082 43754 42751 52291 42380 42858 43474 7920.2 1 1 1 1 1 1 1 1 1 1 6075 1288 5348 5697 6752 6752 2301 WSLNTYK 7 Phospho (STY) _WS(ph)LNTYK_ WS(1)LNTYK WS(42.96)LNT(-42.96)Y(-63.53)K 0 0 1 0 P53367 P53367 P53367 ARFIP1 Arfaptin-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 725.382934570313 2 496.217875 990.421198 37082.6341463356 1.9967 0.00099079 461820 229.16 461820 229.16 725.381460745457 80.947 0.47041 80.947 80.752 81.223 0 35 14 3 0.973881870121726 0.000698664683989094 0.0140805878817348 0.013502 1 18935 82.261 50.839 3 14945000 15383 8479.3 15376 9102.2 20994 17008 22461 17563 9017.4 18373 14556 8013.6 15555 9434.8 20981 16736 22425 18149 9467.6 17707 1 1 1 1 1 1 1 1 1 1 6076 701 5349 5698 6753 6753 1178 WSPPQNYK 8 Phospho (STY) _WS(ph)PPQNYK_ WS(1)PPQNYK WS(75.32)PPQNY(-75.32)K 0 0 1 0 Q96K21 Q96K21 Q96K21 ZFYVE19 Abscission/NoCut checkpoint regulator MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 779.398803710938 2 550.234057 1098.45356 35059.9960980286 1.9614 0.0010792 416480 229.16 416480 229.16 779.397044210644 68.964 1.4533 68.964 68.035 69.489 0 162 49 4 0.635632535949602 0.00289977502319682 0.0566088266036647 0.00077952 2 16200 120.65 89.585 2 49818000 57080 87879 58459 77456 76758 56177 83010 73179 86653 53871 54017 82957 59021 79823 76906 57573 84297 74369 85346 52420 2 2 2 2 2 2 2 2 2 2 6077 1705 5350 5699 6754;6755 6755 3141 WTGTFRVSDK 10 2 Phospho (STY) _WT(ph)GT(ph)FRVSDK_ WT(0.987)GT(0.701)FRVS(0.312)DK WT(17.1)GT(3.62)FRVS(-3.62)DK 0 0 2 1 Q96PS1 Q96PS1 Q96PS1 FANCD2OS FANCD2 opposite strand protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 907.935607910156 2 678.772893 1355.53123 33079.0291901388 1.9132 0.0012986 337610 229.16 337610 229.16 907.934487606219 44.341 0.54343 44.341 44.08 44.624 0 48 18 3 0.894124817919105 0.000801185531987069 0.0178564686346267 0.030612 1 10162 47.302 11.76 3 33564000 27205 28228 26085 27208 16471 28560 19152 25202 29996 9682.6 25738 26660 26218 28020 17331 28543 19664 25701 29137 9700.5 1 1 1 1 1 1 1 1 1 1 6078 1724 5351 5700 6756 6756 4735;4736 WTKPSSFSDSER 12 Phospho (STY) _WTKPSSFS(ph)DSER_ WTKPS(0.001)S(0.012)FS(0.819)DS(0.169)ER WT(-57.46)KPS(-31.72)S(-18.47)FS(6.85)DS(-6.85)ER 0 0 1 1 Q8NC56 Q8NC56 Q8NC56 LEMD2 LEM domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.991149902344 3 502.880206 1505.61879 38992.2669998145 1.5014 0.000755 303800 152.78 303800 152.78 655.990123155769 62.485 0.77993 62.485 62.181 62.961 0 91 26 5 0.962760688311556 0.00613303836490621 0.147005797956433 0.0002465 1 14640 101.05 82.719 5 69177000 20240 28535 20466 26736 15323 22006 19006 21356 28345 4985.2 19153 26945 20539 27486 15914 22270 19426 21597 27572 5188.4 1 1 1 1 1 1 1 1 1 1 6079 1494 5352 5701 6757 6757 2742 WVEENVPSSVTDVALPALLDSDEER 25 Phospho (STY) _WVEENVPSSVTDVALPALLDS(ph)DEER_ WVEENVPSSVTDVALPALLDS(1)DEER WVEENVPS(-109.01)S(-103.35)VT(-114.5)DVALPALLDS(103.35)DEER 0 0 1 0 Q8NBN3 Q8NBN3 Q8NBN3 TMEM87A Transmembrane protein 87A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1027.49682617188 3 950.774215 2849.30081 30486.2221128293 1.1253 0.0010699 80342 76.388 80344 76.389 1027.49538126939 101.12 0.49067 101.12 100.93 101.42 0 40 16 4 0.989232606548888 0.0171421188938168 0.497444010172199 6.9733E-12 1 23734 177.91 165.27 4 112280000 7668 5444.4 11917 6489.3 9961.6 6426.8 13270 10406 10150 164410 7271.8 5149.1 11738 6598.2 10268 6804.2 13264 15238 10147 155050 1 1 1 1 1 1 1 1 1 1 6080 1492 5353 5702 6758 6758 2740 YAALSVDGEDENEGEDYAE 19 Unmodified _YAALSVDGEDENEGEDYAE_ 0 0 0 0 P23588 P23588 P23588 EIF4B Eukaryotic translation initiation factor 4B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1152.99755859375 2 1038.41364 2074.81272 29175.9337392403 1.3628 0.0014151 110340 114.58 110340 114.58 1153.49689992802 71.383 0.6922 71.383 71.087 71.779 -1.4211E-14 97 23 6 0.959760332860767 0.000929652862298769 0.0234086275700529 1.9679E-15 1 16710 228.12 210.45 1 132240000 3880.7 5176 3986.8 4959.5 4580 3911.7 5695.3 4855.2 5499.8 16341 3672.6 4888.4 4017.8 5088.6 4628.3 4010.2 5738.4 5326 5434.9 15500 1 1 1 1 1 1 1 1 1 1 6081 468 5354 5703 6759 6759 YADLTEDQLPSCESLK 16 Unmodified _YADLTEDQLPSCESLK_ 0 0 0 0 P18669 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 776.735900878906 3 623.624263 1867.85096 35332.1052427515 2.1193 0.0013217 244980 152.78 244980 152.78 776.73416312553 77.139 0.48398 77.139 76.884 77.368 0 46 16 4 0.988388569097888 0.00419016687974289 0.0240992758931352 4.7556E-07 1 18087 150.05 122.72 1 16161000 10426 7837.6 11500 8631.2 10092 11572 10376 10567 8767 11472 9869.6 7408.4 11501 8861.1 10327 11477 10504 10984 8718.7 11047 1 1 1 1 1 1 1 1 1 1 6082 431 5355 5704 6760 6760 YADSPGASSPEQPK 14 Phospho (STY) _YADSPGASS(ph)PEQPK_ YADSPGAS(0.04)S(0.96)PEQPK Y(-90.48)ADS(-55.4)PGAS(-13.84)S(13.84)PEQPK 0 0 1 0 P32519 P32519 P32519 ELF1 ETS-related transcription factor Elf-1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 657.987243652344 3 505.211733 1512.61337 38399.9106501937 1.7175 0.00086771 302400 152.77 302400 152.78 657.986691221089 43.633 0.6388 43.633 43.326 43.965 0 68 21 5 0.688439863880194 0.00134631575522132 0.00352057152238271 0.00011923 1 9967 115.04 97.548 4 127640000 35018 29573 34682 29957 26398 40143 26953 32274 31631 6952.8 33134 27939 34842 30899 27290 39697 27537 32887 31012 7293.9 1 1 1 1 1 1 1 1 1 1 6083 528 5356 5705 6761 6761 859 YAGALRASGEMASAQYITAALR 22 Oxidation (M),Phospho (STY) _YAGALRAS(ph)GEM(ox)ASAQYITAALR_ YAGALRASGEM(1)ASAQYITAALR YAGALRAS(1)GEMASAQYITAALR YAGALRASGEM(179.89)ASAQYITAALR Y(-109.55)AGALRAS(61.29)GEMAS(-61.29)AQY(-120.56)IT(-131.83)AALR 0 1 1 1 P54578 P54578 P54578 USP14 Ubiquitin carboxyl-terminal hydrolase 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 866.433715820313 3 789.710275 2366.109 33875.2893006628 1.4565 0.0011502 96729 76.388 96730 76.389 866.43346357295 84.937 0.69409 84.937 84.579 85.273 -1.4211E-14 107 23 5 0.922328360041009 0.0088671979975295 0.164453788988254 1.7642E-11 1 19832 179.89 162.82 5 21487000 5064.2 5404.1 5272.5 5911.7 3887.5 6639.1 6160.6 5961.7 7215.2 43426 4792.8 5108 5284.5 6050.7 4059.9 6695.5 6190.6 7314.8 7074.5 41029 1 1 1 1 1 1 1 1 1 1 6084 711 5357 5706 6762 6762 92 1191 YAGALRASGEMASAQYITAALR 22 Phospho (STY) _YAGALRAS(ph)GEMASAQYITAALR_ YAGALRAS(1)GEMASAQYITAALR Y(-124.09)AGALRAS(89.26)GEMAS(-89.26)AQY(-148.4)IT(-134.72)AALR 0 0 1 1 P54578 P54578 P54578 USP14 Ubiquitin carboxyl-terminal hydrolase 14 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.101867675781 3 784.378637 2350.11408 34049.2858176739 1.7372 0.0013626 97385 76.387 97387 76.388 861.099830590204 94.529 0.71838 94.529 94.196 94.914 0 121 24 7 0.985326870510279 0.00567893936919309 0.15320522838209 4.1568E-12 1 21978 199.27 178.61 5 27291000 5116.2 6602.6 5068.3 6913.2 5144.3 5689.7 6675.7 8183.6 7615.5 36214 4841.1 6239 5110.1 7059.7 5238.5 5857.2 6747.4 9203.3 7474.4 34290 1 1 1 1 1 1 1 1 1 1 6085 711 5357 5707 6763 6763 1191 YASSPKPNNSYMFK 14 Phospho (STY) _YASS(ph)PKPNNSYMFK_ YAS(0.017)S(0.983)PKPNNSYMFK Y(-79.75)AS(-17.53)S(17.53)PKPNNS(-56.33)Y(-102.51)MFK 0 0 1 1 Q86VQ1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 801.417175292969 3 571.916263 1712.72696 35282.130027508 3.3302 0.0019046 400690 229.16 400700 229.17 801.414683051163 68.301 0.48935 68.301 68.066 68.555 0 59 16 5 0.94107270285889 0.00496702133199869 0.112821534268319 2.6781E-07 1 16036 164.59 137.86 5 22925000 34928 21679 36364 19753 11645 44085 15674 30870 22846 13234 33056 20469 36239 20790 13340 42962 15958 31876 22238 13176 1 1 1 1 1 1 1 1 1 1 6086 1382 5358 5708 6764 6764 2508 YATSPKPNNSYMFK 14 Phospho (STY) _YATS(ph)PKPNNSYMFK_ YAT(0.017)S(0.983)PKPNNSYMFK Y(-53.09)AT(-17.52)S(17.52)PKPNNS(-45.64)Y(-62.39)MFK 0 0 1 1 Q6P1L5 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 806.089721679688 3 576.588146 1726.74261 35039.9204973415 2.286 0.0013181 397450 229.16 397450 229.17 805.751560463737 69.572 0.4359 69.572 69.293 69.728 0 35 14 3 0.935492993892784 0.00310255621610984 0.0577885666254318 0.00012657 1 16313 113.29 76.65 5 11206000 12667 11836 13992 12538 20024 14307 24433 17983 13556 13221 11991 11185 14095 12860 20016 14332 24361 18294 13837 12866 1 1 1 1 1 1 1 1 1 1 6087 1255 5359 5709 6765 6765 2226 YCPQGTVADGAPSGTGDCPDPGEVPEYPPYYQEEAGY 37 Unmodified _YCPQGTVADGAPSGTGDCPDPGEVPEYPPYYQEEAGY_ 0 0 0 0 Q99439 Q99439 Q99439 CNN2 Calponin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1056.95678710938 4 999.164913 3992.63054 30314.9972695791 1.33 0.0013289 57338 57.29 57339 57.291 1056.70629195268 84.13 0.59838 84.13 83.841 84.439 0 83 20 6 0.957784759766659 0.00234715779710619 0.0335810830788775 0.010507 2 19641 61.09 55.931 1 21069000 2995.7 2945.4 2634.5 3237.4 5322.4 3770.5 6009.6 3892.5 3430.7 35784 2833.4 2784 2707.8 3314.8 5249.7 3824.5 6013.6 4978 3494.4 33785 2 2 2 2 2 2 2 2 2 2 6088 1763 5360 5710 6766;6767 6766 YCPQGTVADGAPSGTGDCPDPGEVPEYPPYYQEEAGY 37 Unmodified _YCPQGTVADGAPSGTGDCPDPGEVPEYPPYYQEEAGY_ 0 0 0 0 Q99439 Q99439 Q99439 CNN2 Calponin-2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1408.94653320313 3 1331.88412 3992.63054 26569.2899575277 1.2528 0.0016686 57353 76.388 57354 76.389 1408.9419283468 84.072 0.48659 84.072 83.784 84.271 0 45 16 5 0.934852646192579 0.00140161618982167 0.0214835254947666 0.0021514 1 19663 90.955 80.897 1 11634000 398.52 456.85 1239.7 1015.9 908.14 974.17 1995.2 1898.2 416.56 6892 380.25 434.75 1198 1008.3 955.04 1002.9 1935.5 2075.9 477.97 6533.5 1 1 1 1 1 1 1 1 1 1 6089 1763 5360 5710 6768 6768 YCSHPLLGQNVENISQQER 19 Phospho (STY) _YCS(ph)HPLLGQNVENISQQER_ YCS(1)HPLLGQNVENISQQER Y(-56.52)CS(56.52)HPLLGQNVENIS(-146.59)QQER 0 0 1 0 Q8TF40 Q8TF40 Q8TF40 FNIP1 Folliculin-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.406799316406 3 784.686129 2351.03656 33505.7896857992 1.3995 0.0010982 97347 76.387 97349 76.388 861.407204052268 64.671 0.37673 64.671 64.446 64.822 0 34 12 4 0.955630373416352 0.00122950214954254 0.0159705668360722 5.0272E-11 1 15187 185.71 167.22 3 9218500 6938.6 7576.7 6882 6136.1 4986.9 6829.4 5525.6 7749.4 7056.4 11214 6565.4 7149.3 6910.9 6399.4 5181.7 6847.2 5640.6 8075.5 6897.7 10739 1 1 1 1 1 1 1 1 1 1 6090 1557 5361 5711 6769 6769 2865 YDERPGPSPLPHR 13 Phospho (STY) _YDERPGPS(ph)PLPHR_ YDERPGPS(1)PLPHR Y(-53.52)DERPGPS(53.52)PLPHR 0 0 1 1 P08621 P08621 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 610.970031738281 3 534.247112 1599.71951 39689.9328694652 1.1843 0.00063273 142980 76.388 142980 76.388 610.635022231848 39.678 1.3664 39.678 38.754 40.12 0 188 46 5 0.93023016902001 0.00750586132619884 0.101611667043263 0.0035146 1 8896 91.475 72.151 2 283590000 18480 17392 19567 17677 12382 17315 14551 18669 15433 3299.8 17490 16431 19557 18127 13021 17395 14731 18773 15190 3539.2 1 1 1 1 1 1 1 1 1 1 6091 335 5362 5712 6770 6770 548 YDSSNQVK 8 Phospho (STY) _YDS(ph)SNQVK_ YDS(0.5)S(0.5)NQVK Y(-44.67)DS(0)S(0)NQVK 0 0 1 0 O95983 O95983 O95983 MBD3 Methyl-CpG-binding domain protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 739.870178222656 2 510.705329 1019.39611 36222.5463716892 2.0332 0.0010384 448720 229.16 448720 229.16 739.868529381835 41.039 0.53913 41.039 40.8 41.339 0 54 18 4 0.989162845281527 0.00152047151164671 0.0143557314033875 0.00068216 1 9326 123.01 83.986 3 66017000 36409 64697 34637 62524 50202 32980 54250 53725 66137 43755 34446 61105 35178 63855 50095 34719 55353 54404 64753 42444 1 1 1 1 1 1 1 1 1 1 6092 271 5363 5713 6771 6771 452;453 YEEIDNAPEER 11 Unmodified _YEEIDNAPEER_ 0 0 0 0 P49411 P49411 P49411 TUFM Elongation factor Tu, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.380615234375 2 682.801871 1363.58919 35840.9773957642 1.0688 0.00072978 167810 114.58 167810 114.58 797.381657897565 45.532 0.41135 45.532 45.379 45.791 -7.1054E-15 28 13 3 0.938626286698309 0.000795978673805827 0.00483019243580377 1.1704E-09 1 10503 192.44 160.95 1 34330000 29524 32961 28032 28595 30961 28341 32536 34709 32561 14501 27932 31112 28352 29622 31268 28526 33044 35006 32127 14458 1 1 1 1 1 1 1 1 1 1 6093 638 5364 5714 6772 6772 YEPQSPGYEPR 11 Phospho (STY) _YEPQS(ph)PGYEPR_ YEPQS(1)PGYEPR Y(-120.88)EPQS(112.65)PGY(-112.65)EPR 0 0 1 0 Q9H5H4 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 816.368591308594 2 701.787382 1401.56021 34692.7390106449 1.5488 0.0010869 163270 114.58 163270 114.58 816.368878504218 46.633 0.60009 46.633 46.346 46.946 7.1054E-15 74 20 5 0.992965291291899 0.00282266670908517 0.0254024586932255 8.4039E-15 1 10740 224.75 203.6 3 99791000 17503 44473 15563 39066 41667 16973 43391 35432 40092 15736 16555 41982 16106 40087 40764 18260 43995 35300 39698 15638 1 1 1 1 1 1 1 1 1 1 6094 1943 5365 5715 6773 6773 3523 YEPSDKDRQSPPPAK 15 Phospho (STY) _YEPSDKDRQS(ph)PPPAK_ YEPS(0.001)DKDRQS(0.999)PPPAK Y(-50.81)EPS(-29.51)DKDRQS(29.51)PPPAK 0 0 1 2 Q86VM9 Q86VM9 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 621.58056640625 4 449.456912 1793.79854 39398.9258257184 1.4023 0.00063027 382400 171.87 382400 171.87 621.579549290827 39.651 1.3657 39.651 38.844 40.21 7.1054E-15 160 46 5 0.77348796421094 0.0018921266152498 0.0285440004713772 0.012258 1 8889 68.088 48.765 3 59735000 9525.3 11827 10349 11657 10759 9688.2 10181 10035 12210 2223.4 9016.4 11172 10377 11948 10888 9807.4 10446 10120 11961 2325.9 1 1 1 1 1 1 1 1 1 1 6095 1380 5366 5716 6774 6774 2502 YESLKGVDPK 10 Phospho (STY) _YES(ph)LKGVDPK_ Y(0.001)ES(0.999)LKGVDPK Y(-31.02)ES(31.02)LKGVDPK 0 0 1 1 P47914 P47914 P47914 RPL29 60S ribosomal protein L29 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 635.023254394531 3 405.860083 1214.55842 40637.9126295328 2.3067 0.00093619 564630 229.16 564640 229.16 635.022695732294 62.813 0.64153 62.813 62.523 63.165 0 64 21 4 0.758992163500193 0.00228931481324343 0.0186527643280396 0.0085604 1 14758 73.834 58.632 2 23093000 20650 18730 23862 17411 13110 24169 10459 17840 18646 13163 19552 17686 23706 18066 13909 23870 10998 18537 18051 12808 1 1 1 1 1 1 1 1 1 1 6096 622 5367 5717 6775 6775 1023 YESQEPLAGQESPLPLATR 19 Phospho (STY) _YESQEPLAGQES(ph)PLPLATR_ YESQEPLAGQES(1)PLPLATR Y(-139.25)ES(-127.69)QEPLAGQES(56.93)PLPLAT(-56.93)R 0 0 1 0 Q9C0C2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 799.401123046875 3 722.675336 2165.00418 35790.428679526 1.9482 0.0014079 105700 76.388 105700 76.389 799.397740778539 74.784 0.72698 74.784 74.449 75.176 0 75 24 5 0.892600869708291 0.00476789817035868 0.0864518437496801 4.5972E-11 1 17540 188.08 174.66 4 33343000 8335.4 8913 8319.8 9363.8 6726.7 8333.5 7392.3 9587.7 10170 17565 7887.4 8422.4 8360.2 9570.4 6932.3 8447.8 7568.9 10098 9916.5 16762 1 1 1 1 1 1 1 1 1 1 6097 1885 5368 5718 6776 6776 3436 YETPSDAIEVISPASSPAPPQEK 23 Phospho (STY) _YETPSDAIEVIS(ph)PASSPAPPQEK_ YETPSDAIEVIS(1)PASSPAPPQEK Y(-70.85)ET(-51.41)PS(-50.52)DAIEVIS(42.93)PAS(-44.08)S(-42.93)PAPPQEK 0 0 1 0 O75376 O75376 O75376 NCOR1 Nuclear receptor corepressor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 984.835388183594 3 831.71927 2492.13598 32224.9087054509 1.8058 0.001502 183690 152.78 183690 152.78 984.83209811954 77.432 0.46695 77.432 77.254 77.721 1.4211E-14 42 15 3 0.909135346926808 0.00210290850171044 0.0310763921601119 3.2363E-05 1 18156 122.5 97.705 6 9799200 6685.8 4100.3 6460.4 4821.5 5008.4 6734.5 5897.8 6487.4 6160.1 33026 6325.7 3877.5 6502.1 4937.3 5181.1 6724 5968 7512 6067.1 31248 1 1 1 1 1 1 1 1 1 1 6098 180 5369 5719 6777 6777 316 YEYDPDISPPR 11 Phospho (STY) _YEYDPDIS(ph)PPR_ YEYDPDIS(1)PPR Y(-113.65)EY(-97.87)DPDIS(97.87)PPR 0 0 1 0 Q9BRD0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 830.877746582031 2 716.29504 1430.57553 34403.774870264 1.7154 0.0012287 159960 114.58 159960 114.58 830.875622320183 66.201 1.5777 66.201 65.343 66.921 1.4211E-14 125 53 4 0.984370180142383 0.000769822192754105 0.0171930783320085 3.6984E-07 1 15494 166.24 151.57 3 19067000 12627 14966 14575 15752 15637 15512 16674 16454 15547 20379 11956 14143 14579 16122 15820 15609 16892 17083 15389 19570 1 1 1 1 1 1 1 1 1 1 6099 1810 5370 5720 6778 6778 3324 YFAESDEEEDDVDFAMFN 18 Oxidation (M),Phospho (STY) _YFAES(ph)DEEEDDVDFAM(ox)FN_ YFAESDEEEDDVDFAM(1)FN YFAES(1)DEEEDDVDFAMFN YFAESDEEEDDVDFAM(202.5)FN Y(-136.55)FAES(136.55)DEEEDDVDFAMFN 0 1 1 0 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 833.656921386719 3 756.932812 2267.77661 35145.6229810151 1.7853 0.0013514 100920 76.387 100920 76.389 833.654417859178 100.41 0.95918 100.41 100.26 101.22 0 57 33 3 0.946126656103784 0.00406813286233026 0.0981794252997502 2.6984E-11 1 23467 202.5 183.96 2 38826000 6323.1 6963.2 6389.9 7432.6 7570.5 6127.2 6909 8736.3 6873.5 52131 5983.6 6580.5 6443.6 7581.9 7603.5 6330.8 7063.6 10233 6783.6 49289 1 1 1 1 1 1 1 1 1 1 6100 855 5371 5721 6779 6779 116 1381 YFAESDEEEDDVDFAMFN 18 Oxidation (M),Phospho (STY) _YFAES(ph)DEEEDDVDFAM(ox)FN_ YFAESDEEEDDVDFAM(1)FN YFAES(1)DEEEDDVDFAMFN YFAESDEEEDDVDFAM(256.53)FN Y(-168.86)FAES(168.86)DEEEDDVDFAMFN 0 1 1 0 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1249.986328125 2 1134.89558 2267.77661 29619.6442331925 1.7462 0.0019818 100960 114.58 100970 114.59 1249.98218325366 100.45 0.44579 100.45 100.31 100.76 0 23 15 3 0.683260988462929 0.000510440991324092 0.01234138964698 1.6789E-22 2 23491 256.53 238.61 2 16671000 8937.9 10383 8894 8390.2 8980.5 9191.8 11916 14605 9824.7 216320 8457.4 9797.4 8964.8 8749.3 9147.8 9652.9 11931 20958 9782.7 204030 2 2 2 2 2 2 2 2 2 2 6101 855 5371 5721 6780;6781 6780 116 1381 YFAESDEEEDDVDFAMFN 18 Phospho (STY) _YFAES(ph)DEEEDDVDFAMFN_ YFAES(1)DEEEDDVDFAMFN Y(-159.78)FAES(159.78)DEEEDDVDFAMFN 0 0 1 0 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1241.984375 2 1126.89812 2251.78169 28569.0909914074 1.3153 0.0014822 101680 114.58 101680 114.58 1241.98174247979 102.58 0.61077 102.58 102.25 102.86 0 60 20 4 0.975038770832794 0.00100878957143747 0.0204974110664202 1.2984E-22 1 24142 266.89 251.51 2 57365000 2400.5 2857.1 3306.1 3150.9 2768.7 3167.1 2962.6 4108.6 2787.2 69104 2274.9 2700.7 3270.7 3217.6 2844 3315.8 3001.6 6167 2757.6 65165 1 1 1 1 1 1 1 1 1 1 6102 855 5371 5722 6782 6782 1381 YFAESDEEEDDVDFAMFN 18 Phospho (STY) _YFAES(ph)DEEEDDVDFAMFN_ YFAES(1)DEEEDDVDFAMFN Y(-169.83)FAES(169.83)DEEEDDVDFAMFN 0 0 1 0 Q02880 Q02880 Q02880 TOP2B DNA topoisomerase 2-beta MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1241.49194335938 2 1126.89812 2251.78169 NaN NaN NaN NaN NaN NaN NaN NaN 102.92 1 102.92 102.42 103.42 0 NaN NaN NaN 1.3378E-27 1 24259 259.1 236.94 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6103 855 5371 5722 6783 6783 1381 YFDSGDYNMAK 11 Phospho (STY) _YFDS(ph)GDYNMAK_ YFDS(0.931)GDY(0.069)NMAK Y(-52.14)FDS(11.32)GDY(-11.32)NMAK 0 0 1 0 O43768;P56211 O43768;P56211 O43768 ENSA;ARPP19 Alpha-endosulfine;cAMP-regulated phosphoprotein 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 925.419311523438 2 695.754693 1389.49483 31678.6368397599 2.6053 0.0018126 329370 229.16 329370 229.16 924.917649058057 75.161 0.54408 75.161 74.945 75.489 0 42 18 3 0.96272490951762 0.00169893873154686 0.0564911757457667 0.00021768 2 17650 111.12 93.797 3 13803000 31408 31844 37619 29461 17533 39310 18799 31354 34695 60722 29744 30068 37280 30553 19011 38977 19510 33588 33559 57902 2 2 2 2 2 2 2 2 2 2 6104 128;729 5372 5723 6784;6785 6784 225 YFEADPPGQVAASPDPTT 18 Phospho (STY) _YFEADPPGQVAAS(ph)PDPTT_ YFEADPPGQVAAS(0.935)PDPT(0.049)T(0.016) Y(-101.06)FEADPPGQVAAS(12.84)PDPT(-12.84)T(-17.65) 0 0 1 0 O43598 O43598 O43598 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 724.665405273438 3 648.275061 1941.80335 37041.1410698708 1.8842 0.0012215 117830 76.388 117830 76.389 724.996899391615 75.46 1.2104 75.46 74.945 76.156 0 114 41 4 0.716983282668425 0.00344173157815088 0.0617867576092989 6.4137E-05 1 17669 104.3 87.637 4 26176000 7842.7 10901 7308.3 10791 7371.2 6952.5 7620.2 8920.6 10607 14253 7419.2 10297 7391 11025 7482.9 7191.7 7826.5 9301.2 10339 13628 1 1 1 1 1 1 1 1 1 1 6105 120 5373 5724 6786 6786 209 YFPSSLSPVTPSESLPRPR 19 Phospho (STY) _YFPSSLS(ph)PVTPSESLPRPR_ YFPS(0.001)S(0.014)LS(0.985)PVTPSESLPRPR Y(-78.24)FPS(-29.33)S(-18.63)LS(18.63)PVT(-33.79)PS(-56.56)ES(-61.9)LPRPR 0 0 1 1 Q9P0U4 Q9P0U4 Q9P0U4 CXXC1 CXXC-type zinc finger protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 809.749694824219 3 733.027821 2196.06163 35980.1593871629 1.9779 0.0014499 104210 76.388 104210 76.39 809.749967278783 82.21 0.71908 82.21 81.795 82.514 0 88 24 5 0.908340491923459 0.00481855047720357 0.128253426419308 3.503E-05 1 19191 119.72 102.43 7 26336000 8531.3 9038.1 8100.2 8185.8 7126.1 7785.9 9920.7 9636.4 9535.9 10976 8071.1 8533.1 8174.6 8450.5 7328.2 7865.9 9953.7 9925 9425.4 10558 1 1 1 1 1 1 1 1 1 1 6106 2094 5374 5725 6787 6787 3783 YFQINQDEEEEEDED 15 Unmodified _YFQINQDEEEEEDED_ 0 0 0 0 P35268 P35268 P35268 RPL22 60S ribosomal protein L22 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1080.95373535156 2 966.368697 1930.72284 29871.6425883742 1.6795 0.001623 118570 114.58 118570 114.58 1081.45149437118 72.28 4.7266 72.28 71.549 76.276 0 520 162 7 0.975837587217926 0.00162189541262041 0.0844412437946899 8.5127E-16 5 17408 245.08 236.56 1 1659600000 63372 74201 64995 66944 63654 57890 63811 67899 72759 223410 59972 70054 65337 69034 64686 58977 65192 74452 71412 211940 5 5 5 5 5 5 5 5 5 5 6107 545 5375 5726 6788;6789;6790;6791;6792 6791 YFQINQDEEEEEDED 15 Unmodified _YFQINQDEEEEEDED_ 0 0 0 0 P35268 P35268 P35268 RPL22 60S ribosomal protein L22 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1080.95349121094 2 966.368697 1930.72284 NaN NaN NaN NaN NaN NaN NaN NaN 76.219 1 76.219 75.719 76.719 0 NaN NaN NaN 3.1411E-13 1 17883 189.57 181.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6108 545 5375 5726 6793 6793 YFQINQDEEEEEDED 15 Unmodified _YFQINQDEEEEEDED_ 0 0 0 0 P35268 P35268 P35268 RPL22 60S ribosomal protein L22 MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1080.95715332031 2 966.368697 1930.72284 NaN NaN NaN NaN NaN NaN NaN NaN 77.6 1 77.6 77.1 78.1 0 NaN NaN NaN 4.6667E-05 1 18192 127.83 119.32 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6109 545 5375 5726 6794 6794 YFQSPSR 7 Phospho (STY) _YFQS(ph)PSR_ YFQS(0.843)PS(0.157)R Y(-53.5)FQS(7.29)PS(-7.29)R 0 0 1 0 Q16629 Q16629 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.281433105469 2 482.69985 963.385147 40692.802121013 0.52965 0.00025566 237380 114.58 237380 114.58 597.281305327868 47.584 0.70919 47.584 47.267 47.976 -7.1054E-15 50 28 2 0.841736789712247 0.00853984598608215 0.0859584362380503 0.0015389 1 11016 114.86 76.683 3 195600000 133070 87025 135870 80110 55143 145540 47419 92079 87458 1432.3 125930 82170 135650 83728 60654 142290 49736 94477 84597 3479.7 1 1 1 1 1 1 1 1 1 1 6110 1109 5376 5727 6795 6795 1931 YFQSPSRSR 9 2 Phospho (STY) _YFQS(ph)PSRS(ph)R_ Y(0.001)FQS(0.968)PS(0.085)RS(0.946)R Y(-30.75)FQS(14.75)PS(-12.29)RS(12.29)R 0 0 2 1 Q16629 Q16629 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.833801269531 2 644.249585 1286.48462 36449.7472959769 1.7378 0.0011196 177850 114.58 177860 114.58 758.831346100531 44.524 1.1243 44.524 44.111 45.236 0 110 38 4 0.849701733802971 0.000939642441520121 0.01668620660654 0.029008 1 10171 57.212 33.395 6 37309000 24837 18048 23288 16885 18900 24659 21033 20758 18265 6603.4 23496 17042 23489 17533 19466 24334 21232 21172 18140 6698.3 1 1 1 1 1 1 1 1 1 1 6111 1109 5377 5728 6796 6796 1931;1932 YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 31 Phospho (STY) _YGGSVGSQPPPVAPEPGPVPSS(ph)PSQEPPTKR_ YGGSVGSQPPPVAPEPGPVPS(0.064)S(0.76)PS(0.159)QEPPT(0.018)KR Y(-199.27)GGS(-184.88)VGS(-169.26)QPPPVAPEPGPVPS(-10.76)S(6.8)PS(-6.8)QEPPT(-16.36)KR 0 0 1 1 Q04323 Q04323 Q04323 UBXN1 UBX domain-containing protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 906.467224121094 4 791.632854 3162.50231 32708.035313101 1.5927 0.0012608 144740 114.58 144740 114.58 906.465352962089 60.816 1.252 60.816 60.398 61.65 -7.1054E-15 125 42 5 0.972818875309593 0.00340269081780636 0.0360284361465539 2.7086E-18 1 14242 240.07 219.36 7 33306000 6262.6 8695.9 6282 7243.5 4844.6 6695.3 5456 6869.3 7870.6 9490.3 5926.1 8206.4 6308.1 7517.2 5012.1 6755.6 5590.5 7169.6 7663.5 9095.3 1 1 1 1 1 1 1 1 1 1 6112 860 5378 5729 6797 6797 1390 YGLIYHASLVGQTSPK 16 Phospho (STY) _YGLIYHASLVGQTS(ph)PK_ YGLIYHASLVGQT(0.209)S(0.791)PK Y(-118.88)GLIY(-112.04)HAS(-63.44)LVGQT(-5.77)S(5.77)PK 0 0 1 0 Q9Y2X3 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.076049804688 3 605.300993 1812.88115 36327.7735218958 1.8348 0.0011106 252400 152.78 252400 152.78 758.076000086931 80.724 0.73615 80.724 80.313 81.049 1.4211E-14 65 24 4 0.436449405417003 0.00189717226965884 0.0261635549536874 1.527E-05 1 18870 134.52 104.88 5 9664600 3587.5 4501.8 4023.3 4193.1 3947.7 4258.6 5530.8 4382.6 4077 63869 3396.3 4250.9 4028.2 4325.3 4031.6 4387.5 5514.1 6315.8 4084.4 60242 1 1 1 1 1 1 1 1 1 1 6113 2258 5379 5730 6798 6798 4186 YGLSPGPVTESTRPVYLK 18 Phospho (STY) _YGLS(ph)PGPVTESTRPVYLK_ Y(0.002)GLS(0.953)PGPVT(0.024)ES(0.016)T(0.005)RPVYLK Y(-27.2)GLS(16.07)PGPVT(-16.07)ES(-17.63)T(-22.62)RPVY(-37.18)LK 0 0 1 1 Q9Y2U8 Q9Y2U8 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 834.787902832031 3 682.009879 2043.00781 34435.5359196688 2.2541 0.0015373 224010 152.78 224010 152.78 834.785093839761 79.489 0.30997 79.489 79.334 79.644 0 19 10 3 0.727887234950101 0.000439479006956425 0.0261017912964871 0.049352 1 18636 40.622 25.694 6 4683800 6127.6 7462.7 5879.6 7249.7 4563.2 6424.9 5607.2 6145.5 8016.2 14532 5797.4 7048.5 5920.5 7443.5 4725.5 6500.7 5723.5 6613.1 7807.4 13826 1 1 1 1 1 1 1 1 1 1 6114 2255 5380 5731 6799 6799 4163 YGMGTSVER 9 Oxidation (M),Phospho (STY) _YGM(ox)GTS(ph)VER_ YGM(1)GTSVER YGMGT(0.028)S(0.972)VER YGM(74.77)GTSVER Y(-52.69)GMGT(-15.35)S(15.35)VER 0 1 1 0 P08559 P08559 P08559 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 662.795227050781 2 548.212464 1094.41038 38059.6705269784 1.2524 0.0006866 209010 114.58 209010 114.58 662.793806152519 34.12 0.497 34.12 33.816 34.313 0 56 16 4 0.894687626134516 0.00250329475495046 0.0577317799539821 0.01207 1 7605 74.772 40.051 3 146550000 24740 13206 23488 13980 24284 24290 28239 22370 14046 4455.5 23406 12480 23740 14473 24639 23871 28166 22648 14461 4713.1 1 1 1 1 1 1 1 1 1 1 6115 332 5381 5732 6800 6800 37 541 YGMGTSVER 9 Phospho (STY) _YGMGTS(ph)VER_ YGMGT(0.009)S(0.991)VER Y(-76.29)GMGT(-20.49)S(20.49)VER 0 0 1 0 P08559 P08559 P08559 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 654.797668457031 2 540.215007 1078.41546 38702.0202885581 0.52557 0.00028392 212100 114.58 212100 114.58 654.796417798129 47.306 1.0283 47.306 46.917 47.946 0 115 39 4 0.815794560362385 0.0100209691184355 0.228038436128969 0.00051928 1 10890 110.54 66.583 3 917720000 109100 52390 108960 53306 101370 120740 148590 110370 54628 263110 103240 49496 109720 55760 103900 118380 146410 119040 57887 250300 1 1 1 1 1 1 1 1 1 1 6116 332 5381 5733 6801 6801 541 YGQFSGLNPGGRPITPPR 18 Phospho (STY) _YGQFSGLNPGGRPIT(ph)PPR_ YGQFSGLNPGGRPIT(1)PPR Y(-60.36)GQFS(-48.64)GLNPGGRPIT(48.64)PPR 0 0 1 1 P62136 P62136 P62136 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 741.715209960938 3 665.326313 1992.95711 36097.063829766 1.6894 0.001124 114810 76.388 114810 76.389 742.04841059181 70.209 1.4765 70.209 69.234 70.711 0 175 50 5 0.992719789670216 0.00357004011447621 0.146935454768931 0.030556 1 16342 69.071 48.132 3 76291000 7576 7608.2 7256.6 6933.4 7845.8 7261.9 8559.2 8251.5 8603.1 5493.5 7167.7 7183.4 7333.9 7165.5 7937.3 7287.1 8679.5 8404 8486.9 5363.7 1 1 1 1 1 1 1 1 1 1 6117 754 5382 5734 6802 6802 4489 YGSIVDDER 9 Phospho (STY) _YGS(ph)IVDDER_ YGS(1)IVDDER Y(-55.14)GS(55.14)IVDDER 0 0 1 0 Q13576 Q13576 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 681.811828613281 2 567.229168 1132.44378 38065.6176396599 0.9731 0.00055197 202000 114.58 202000 114.58 681.811024679913 54.745 0.66041 54.745 54.473 55.134 0 55 22 3 0.673963971338277 0.00266993005714082 0.0445362145559684 7.3437E-06 1 12766 145.28 49.501 2 43331000 36308 25003 41846 20705 59260 40856 60650 44917 23144 5428.6 34378 23595 42034 21846 59093 40114 60643 45062 24427 6151.2 1 1 1 1 1 1 1 1 1 1 6118 968 5383 5735 6803 6803 1641 YGSPPQRDPNWNGER 15 Phospho (STY) _YGS(ph)PPQRDPNWNGER_ Y(0.009)GS(0.991)PPQRDPNWNGER Y(-20.61)GS(20.61)PPQRDPNWNGER 0 0 1 1 O15234 O15234 O15234 CASC3 Protein CASC3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 694.98681640625 3 618.263601 1851.76897 37587.7271161476 1.5825 0.00097838 123550 76.388 123550 76.389 694.65238557795 44.399 1.2487 44.399 43.58 44.829 0 139 42 4 0.75762303555673 0.00256369444159642 0.0486073716040242 0.0083675 1 10121 78.401 52.271 2 40553000 22338 26500 25341 27225 27788 22530 29006 29928 29262 5630.2 21148 25038 25377 27834 28073 22896 29474 29903 28862 5994.2 1 1 1 1 1 1 1 1 1 1 6119 85 5384 5736 6804 6804 149 YGSQEHPIGDK 11 Phospho (STY) _YGS(ph)QEHPIGDK_ YGS(1)QEHPIGDK Y(-35.63)GS(35.63)QEHPIGDK 0 0 1 0 Q14644 Q14644 Q14644 RASA3 Ras GTPase-activating protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 590.294860839844 3 437.518608 1309.534 40482.1464964441 1.6296 0.00071299 349190 152.78 349190 152.78 590.294320452033 43.863 0.47083 43.863 43.609 44.08 0 51 15 5 0.856522459878848 0.00309897476105333 0.0732096210712942 0.0022 1 10059 94.922 73.049 2 26541000 24297 12997 25372 13921 15867 25998 16456 17428 13398 2803.3 22995 12283 25371 14431 16669 25418 16639 17899 13349 3043 1 1 1 1 1 1 1 1 1 1 6120 1013 5385 5737 6805 6805 1720 YGVYEDENYEVGSDDEEIPFK 21 Phospho (STY) _YGVYEDENYEVGS(ph)DDEEIPFK_ YGVYEDENYEVGS(1)DDEEIPFK Y(-79.66)GVY(-79.66)EDENY(-42.31)EVGS(42.31)DDEEIPFK 0 0 1 0 O15541 O15541 O15541 RNF113A RING finger protein 113A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1012.78839111328 3 859.67914 2576.01559 31472.822274953 1.4935 0.0012839 177710 152.78 177710 152.78 1012.7892409549 93.584 1.874 93.584 93.179 95.053 0 219 64 5 0.901614546003862 0.00363478461205174 0.0673454576878358 5.7354E-05 3 21740 107.83 92.768 4 53297000 12117 17740 13060 19797 12556 14055 12965 24084 20084 261110 11470 16770 13092 20109 12785 14962 13373 31637 19515 246430 3 3 3 3 3 3 3 3 3 3 6121 97 5386 5738 6806;6807;6808 6806 164 YGVYEDENYEVGSDDEEIPFK 21 Phospho (STY) _YGVYEDENYEVGS(ph)DDEEIPFK_ YGVYEDENYEVGS(1)DDEEIPFK Y(-72.71)GVY(-69.29)EDENY(-34.14)EVGS(34.14)DDEEIPFK 0 0 1 0 O15541 O15541 O15541 RNF113A RING finger protein 113A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 759.843078613281 4 645.011174 2576.01559 37156.7980533699 1.7941 0.0011572 177640 114.58 177640 114.58 760.093573989757 93.588 0.43248 93.588 93.389 93.822 0 22 14 2 0.924332986465352 0.000773360917845761 0.0268714282854668 0.0051343 1 21789 86.44 72.279 4 8686600 2828.2 3170.7 2453.6 3475.7 3007.5 2461.1 2990.6 3794.2 3522.9 52247 2674.8 2997 2498.9 3533.9 3019.6 2627.3 3059.6 5328.5 3453.4 49285 1 1 1 1 1 1 1 1 1 1 6122 97 5386 5738 6809 6809 164 YGVYEDENYEVGSDDEEIPFK 21 Phospho (STY) _YGVYEDENYEVGS(ph)DDEEIPFK_ YGVYEDENY(0.001)EVGS(0.999)DDEEIPFK Y(-67.05)GVY(-67.05)EDENY(-31.73)EVGS(31.73)DDEEIPFK 0 0 1 0 O15541 O15541 O15541 RNF113A RING finger protein 113A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1013.12084960938 3 859.67914 2576.01559 31539.1517833402 1.4428 0.0012404 177710 152.78 177710 152.78 1012.78902185645 98.389 1.535 98.389 97.531 99.066 1.4211E-14 65 52 2 0.762848489534226 0.00119365706693299 0.0152486314656786 0.0053018 1 22724 87.49 73.329 4 9909600 2400.2 3461.7 2858.8 2930.4 3393.7 2792.6 4048.7 3758.7 3042.7 42082 2272.9 3267.1 2860.1 3039.1 3420.7 2896.7 4062.3 5000.8 3044.9 39712 1 1 1 1 1 1 1 1 1 1 6123 97 5386 5738 6810 6810 164 YGVYEDENYEVGSDDEEIPFK 21 Phospho (STY) _YGVYEDENYEVGS(ph)DDEEIPFK_ YGVYEDENYEVGS(1)DDEEIPFK Y(-74.86)GVY(-74.66)EDENY(-44.63)EVGS(44.63)DDEEIPFK 0 0 1 0 O15541 O15541 O15541 RNF113A RING finger protein 113A MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1012.45874023438 3 859.67914 2576.01559 NaN NaN NaN NaN NaN NaN NaN NaN 95.221 1 95.221 94.721 95.721 0 NaN NaN NaN 0.014901 1 22156 87.792 69.998 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6124 97 5386 5738 6811 6811 164 YGVYEDENYEVGSDDEEIPFK 21 Phospho (STY) _YGVYEDENYEVGS(ph)DDEEIPFK_ YGVYEDENYEVGS(1)DDEEIPFK Y(-75.94)GVY(-75.94)EDENY(-41.01)EVGS(41.01)DDEEIPFK 0 0 1 0 O15541 O15541 O15541 RNF113A RING finger protein 113A MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1012.45379638672 3 859.67914 2576.01559 NaN NaN NaN NaN NaN NaN NaN NaN 96.925 1 96.925 96.425 97.425 0 NaN NaN NaN 0.0055837 1 22524 96.019 81.858 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6125 97 5386 5738 6812 6812 164 YHGHSMSDPGVSYR 14 2 Phospho (STY) _YHGHSMS(ph)DPGVS(ph)YR_ YHGHS(0.324)MS(0.676)DPGVS(1)YR Y(-78.38)HGHS(-3.2)MS(3.2)DPGVS(41.76)Y(-41.76)R 0 0 2 0 P08559;P29803 P08559 P08559 PDHA1;PDHA2 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 661.267822265625 3 584.879422 1751.61644 39600.9829501264 1.925 0.0011259 130600 76.387 130610 76.388 661.266895879949 41.263 1.0832 41.263 40.911 41.994 7.1054E-15 80 37 3 0.87664329397735 0.00134984851231397 0.0128222655653051 5.351E-05 1 9428 131.25 115.9 10 14075000 11338 8012.5 11699 8577 9997.4 9578.4 11695 10181 8695.7 9886.7 10730 7572.3 11742 8788.2 10267 9582.4 11740 10487 8707.2 9545.1 1 1 1 1 1 1 1 1 1 1 6126 332 5387 5739 6813 6813 542;543 YHTPPRSR 8 2 Phospho (STY) _YHT(ph)PPRS(ph)R_ Y(0.001)HT(0.999)PPRS(1)R Y(-31.07)HT(31.07)PPRS(86.65)R 0 0 2 1 P30414 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 701.816650390625 2 587.233738 1172.45292 37430.0920723152 1.8385 0.0010796 195120 114.58 195120 114.58 701.815250152905 24.151 0.37572 24.151 23.964 24.34 0 25 12 3 0.975376615597318 0.00175183412286814 0.0470220435256648 0.003069 1 5408 97.749 73.945 3 4553400 3466.2 4035.2 3792.8 3483.4 2655.9 4257.6 3358 3065.6 3673 2220.5 3281.1 3808.8 3787.8 3622.7 2772.6 4222.3 3393.1 3188.1 3610.8 2161.8 1 1 1 1 1 1 1 1 1 1 6127 516 5388 5740 6814 6814 843;4442 YIAENGTDPINNQPLSEEQLIDIK 24 Unmodified _YIAENGTDPINNQPLSEEQLIDIK_ 0 0 0 0 Q9UMS4 Q9UMS4 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1058.56823730469 3 905.455495 2713.34465 31273.4309164651 1.7874 0.0016184 168730 152.77 168730 152.78 1058.56501367618 94.583 0.33619 94.583 94.402 94.738 0 28 11 4 0.945052646948236 0.000917118771698914 0.0389456300259466 5.1964E-12 1 22024 181.82 159.81 1 7483600 4406.9 4629 4495.1 3262.9 4191.1 4432.3 4111.7 4457.6 4247.6 25500 4170.4 4365.1 4517.4 3452.4 4270.1 4438.9 4192.9 5238.7 4185.3 24114 1 1 1 1 1 1 1 1 1 1 6128 2198 5389 5741 6815 6815 YIASVQGSTPSPR 13 Phospho (STY) _YIASVQGSTPS(ph)PR_ YIASVQGS(0.054)T(0.133)PS(0.813)PR Y(-73.94)IAS(-57.39)VQGS(-11.81)T(-7.86)PS(7.86)PR 0 0 1 0 P49792 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 558.282470703125 3 481.560696 1441.66026 45014.0547491158 0.68375 0.00032927 158630 76.388 158630 76.388 557.948686789225 54.459 0.37465 54.459 54.207 54.582 0 27 12 3 0.841677942987776 0.000654590977505988 0.00336067132814253 0.0080029 1 12694 78.486 66.62 5 13530000 11625 9201.5 10535 10854 6988.3 12595 6342.2 10166 10781 2326.2 10996 8701.8 10626 11071 7296.2 12521 6608.4 10361 10450 2425.7 1 1 1 1 1 1 1 1 1 1 6129 655 5390 5742 6816 6816 1105 YIDQEELNK 9 Unmodified _YIDQEELNK_ 0 0 0 0 P07900;Q14568;P08238;Q58FF8 P07900;P08238 P08238 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 537.299743652344 3 384.524149 1150.55062 42290.9789723139 0.67731 0.00026044 397310 152.78 397310 152.78 537.299583147319 60.572 0.48948 60.572 60.314 60.803 -7.1054E-15 48 16 4 0.964625149971468 0.00367788163115089 0.120540867043474 2.8356E-06 1 14187 158.37 82.266 1 28730000 13392 14893 13498 13291 9390.4 13702 11098 12203 15263 2134.5 12672 14060 13538 13751 9800 13701 11329 12363 14884 2292.3 1 1 1 1 1 1 1 1 1 1 6130 331;323 5391 5743 6817 6817 YIEVFKSSQEEVR 13 Phospho (STY) _YIEVFKSS(ph)QEEVR_ YIEVFKS(0.163)S(0.837)QEEVR Y(-96.95)IEVFKS(-7.11)S(7.11)QEEVR 0 0 1 1 P52597 P52597 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 718.377380371094 3 565.265949 1692.77602 37142.6999928923 1.7744 0.001003 270270 152.78 270270 152.78 718.37582795489 76.239 0.75656 76.239 75.86 76.617 0 78 25 4 0.912201051222469 0.00426877705977865 0.0677255805763753 6.5485E-05 1 17860 124.29 90.49 3 30010000 7662 7156.7 7179.2 9782.1 11437 7978.6 12193 11732 9815 67099 7248.4 6775.6 7310.4 9854.8 11363 8251.2 12310 13644 9785.3 63454 1 1 1 1 1 1 1 1 1 1 6131 694 5392 5744 6818 6818 1164 YISPDQLADLYK 12 Unmodified _YISPDQLADLYK_ 0 0 0 0 P06733 P06733 P06733 ENO1 Alpha-enolase MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 628.690124511719 3 475.913525 1424.71875 38902.5381191103 1.4233 0.00067739 321020 152.78 321020 152.78 628.689100647557 94.817 0.45552 94.817 94.654 95.11 0 35 15 3 0.909280700906119 0.00144932839346858 0.00934960349994047 2.4948E-05 1 22073 133.32 75.829 1 5601200 4755 4973.1 4769.9 4941.7 5254.4 5008.7 6106.5 5556.6 5211.2 6296.8 4499.5 4697.7 4809.7 5077 5314.8 5036.2 6150.4 5742.2 5179.9 6057.8 1 1 1 1 1 1 1 1 1 1 6132 314 5393 5745 6819 6819 YLFNQLFGEEDADQEVSPDR 20 Unmodified _YLFNQLFGEEDADQEVSPDR_ 0 0 0 0 Q9UBT2 Q9UBT2 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 868.083923339844 3 791.360755 2371.06043 33720.094875953 1.9092 0.0015109 96526 76.387 96527 76.388 868.081887987129 100.38 0.30542 100.38 100.23 100.53 0 29 10 5 0.98258623258174 0.0148501065918035 0.219913430994877 6.8456E-23 1 23456 257.37 239.67 1 95498000 9691.2 9781.7 14941 13715 13884 11937 10194 13261 14337 40000 9190.1 9262.9 14723 13814 14104 12136 10667 14456 13970 37971 1 1 1 1 1 1 1 1 1 1 6133 2129 5394 5746 6820 6820 YLLGDAPVSPSSQK 14 Phospho (STY) _YLLGDAPVS(ph)PSSQK_ YLLGDAPVS(0.999)PS(0.001)SQK Y(-133.24)LLGDAPVS(28.71)PS(-28.71)S(-55.92)QK 0 0 1 0 Q9NYB0 Q9NYB0 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 667.355285644531 3 514.579756 1540.71744 38459.3298848864 2.1931 0.0011285 296890 152.78 296900 152.78 667.355308749818 78.131 1.0281 78.131 77.721 78.749 0 135 33 6 0.966712328851 0.0032165874833641 0.0199504162240966 1.0806E-10 1 18258 193.64 154.01 4 214840000 7917.4 8441.7 7895.7 8806.5 8215.8 7590.9 9847.2 7939.8 8218.4 6838.3 7491.8 7976.6 7958.8 9000.4 8340 7680.3 9900.7 8156.8 8178.2 6622.8 1 1 1 1 1 1 1 1 1 1 6134 2070 5395 5747 6821 6821 3741 YLSDSCSPR 9 Phospho (STY) _YLSDSCS(ph)PR_ YLSDS(0.002)CS(0.997)PR Y(-84.17)LS(-35.2)DS(-26.33)CS(26.33)PR 0 0 1 0 P83436 P83436 P83436 COG7 Conserved oligomeric Golgi complex subunit 7 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 697.305603027344 2 582.723196 1163.43184 36432.4386204765 2.04 0.0011887 196630 114.58 196630 114.58 697.30486381751 44.905 0.55523 44.905 44.596 45.151 -7.1054E-15 35 18 3 0.992104101255541 0.0014274876933672 0.0251870340129848 0.00064358 1 10323 103.69 76.308 4 9777500 20685 24339 23243 25990 16904 22723 17551 22355 25233 6552.4 19582 23002 23181 26532 17545 22930 18045 22636 24571 6687.2 1 1 1 1 1 1 1 1 1 1 6135 809 5396 5748 6822 6822 1294 YLSFTPPEK 9 Phospho (STY) _YLS(ph)FTPPEK_ Y(0.004)LS(0.97)FT(0.026)PPEK Y(-23.81)LS(15.64)FT(-15.64)PPEK 0 0 1 0 Q13177 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 540.621520996094 3 387.845774 1160.51549 42220.0555780111 1.1209 0.00043472 393910 152.78 393910 152.78 540.621251294353 84.379 1.1123 84.379 83.87 84.982 0 118 38 5 0.71536971961546 0.00234814843151738 0.0310405302730594 0.0094278 1 19660 71.066 46.012 3 52727000 8472.4 3657.5 9652.9 3689.5 5356.7 8624.6 4854.5 5260.5 4176.4 2608.6 8021.5 3455.3 9598.5 3865.6 5681.9 8387.3 4947.1 5485.6 4149.6 2578.1 1 1 1 1 1 1 1 1 1 1 6136 933 5397 5749 6823 6823 1535 YLSFTPPEKDGFPSGTPALNAK 22 Phospho (STY) _YLS(ph)FTPPEKDGFPSGTPALNAK_ YLS(0.637)FT(0.363)PPEKDGFPSGTPALNAK Y(-93.93)LS(2.45)FT(-2.45)PPEKDGFPS(-87.37)GT(-112.68)PALNAK 0 0 1 1 Q13177 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 777.164489746094 4 605.041075 2416.13519 35379.4431709487 1.9683 0.0011909 284070 171.87 284070 171.87 777.163849419586 93.456 1.0803 93.456 92.916 93.997 0 138 36 6 0.845011572112198 0.00272784284953081 0.0323771178708704 1.0992E-11 1 21692 183.69 165.19 5 53402000 12832 4358.7 13072 4182 6116.8 11675 7569.4 10125 3718.5 12745 12143 4116.6 13066 4425.1 6634.9 11372 7529.8 10600 3832.4 12235 1 1 1 1 1 1 1 1 1 1 6137 933 5398 5750 6824 6824 1535 YLSSPSGPLR 10 Phospho (STY) _YLSS(ph)PSGPLR_ YLS(0.068)S(0.83)PS(0.102)GPLR Y(-63.7)LS(-10.85)S(9.13)PS(-9.13)GPLR 0 0 1 0 Q7Z591 Q7Z591 Q7Z591 AKNA AT-hook-containing transcription factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 693.355407714844 2 578.773546 1155.53254 39491.8704987019 1.8822 0.0010893 197970 114.58 197970 114.58 693.353232387731 64.972 0.48877 64.972 64.738 65.226 0 35 16 3 0.753243612623885 0.000739826632949151 0.0154645644459718 0.00030739 1 15264 113.27 87.743 4 8932200 12951 8640.7 13865 9396.8 8290.8 13581 8650.9 11359 9336.3 7264.1 12258 8166.9 13841 9669.4 8748.4 13412 8807.4 11698 9183.1 7102.9 1 1 1 1 1 1 1 1 1 1 6138 1346 5399 5751 6825 6825 2429 YMNSDTTSPELR 12 Phospho (STY) _YMNSDTTS(ph)PELR_ YMNSDTT(0.003)S(0.997)PELR Y(-135.45)MNS(-76.67)DT(-48.29)T(-24.61)S(24.61)PELR 0 0 1 0 Q96ST3 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 861.885437011719 2 747.302539 1492.59052 33146.6842968787 2.1731 0.001624 153330 114.58 153330 114.58 861.883887448662 53.676 0.76675 53.676 53.323 54.089 0 73 25 4 0.918010257029635 0.00345653803489027 0.0807172300143177 3.3665E-11 1 12521 203.93 166.82 5 62547000 43175 46632 42787 42782 42223 48326 52279 50596 47411 16538 40853 44029 43118 44251 43019 48252 52599 51161 46986 16743 1 1 1 1 1 1 1 1 1 1 6139 1752 5400 5752 6826 6826 3214 YMSGQTSPR 9 Phospho (STY) _YMSGQTS(ph)PR_ YMS(0.002)GQT(0.026)S(0.972)PR Y(-47.73)MS(-26.82)GQT(-15.71)S(15.71)PR 0 0 1 0 Q9UJ41 Q9UJ41 Q9UJ41 RABGEF1 Rab5 GDP/GTP exchange factor MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 668.302917480469 2 553.720456 1105.42636 37809.1573945696 1.162 0.00064345 206930 114.58 206930 114.58 668.302314292763 36.992 0.64278 36.992 36.569 37.211 0 55 21 4 0.683105408003444 0.0026549608892068 0.0727490691089854 0.028861 1 8345 59.496 23.114 4 38983000 35375 25199 36679 21549 22065 38336 22946 30322 25948 4516.2 33479 23784 36682 22618 23270 37585 23397 30862 25475 4954.3 1 1 1 1 1 1 1 1 1 1 6140 2160 5401 5753 6827 6827 3890 YMSQMSVPEQAELEK 15 Phospho (STY) _YMSQMS(ph)VPEQAELEK_ YMS(0.013)QMS(0.987)VPEQAELEK Y(-54.83)MS(-18.91)QMS(18.91)VPEQAELEK 0 0 1 0 Q15154 Q15154 Q15154 PCM1 Pericentriolar material 1 protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 770.039001464844 3 617.263111 1848.7675 35699.8339233964 2.1084 0.0013015 247500 152.77 247510 152.78 770.371836824434 79.603 0.59402 79.603 79.307 79.901 0 78 20 5 0.714341493361981 0.0059331927074472 0.246363598136813 0.00055328 1 18633 100.28 78.725 3 43891000 17442 14026 17220 12892 14491 18269 17074 17266 15049 25034 16504 13244 17324 13393 14901 18107 17201 18112 14935 23972 1 1 1 1 1 1 1 1 1 1 6141 1062 5402 5754 6828 6828 1837 YNLDASEEEDSNK 13 Phospho (STY) _YNLDAS(ph)EEEDSNK_ YNLDAS(1)EEEDSNK Y(-175.97)NLDAS(55.76)EEEDS(-55.76)NK 0 0 1 0 O95218 O95218 O95218 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1026.46435546875 2 797.301247 1592.58794 30872.8808006282 1.5003 0.0011962 287420 229.16 287430 229.16 1026.46404830665 55.121 0.96263 55.121 54.838 55.801 7.1054E-15 75 32 4 0.983061711092736 0.00126681207300148 0.00858808597497656 1.8679E-32 1 12839 324.17 290.98 3 33722000 22675 22154 22354 20077 19850 24115 24419 24457 21067 37410 21455 20916 22506 20806 20353 24066 24545 25646 20929 35792 1 1 1 1 1 1 1 1 1 1 6142 235 5403 5755 6829 6829 406 YNLDASEEEDSNKK 14 Phospho (STY) _YNLDAS(ph)EEEDSNKK_ YNLDAS(1)EEEDSNKK Y(-134.65)NLDAS(53.64)EEEDS(-53.64)NKK 0 0 1 1 O95218 O95218 O95218 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 803.731872558594 3 574.568245 1720.6829 35151.5304662954 2.6037 0.001496 398840 229.16 398850 229.16 804.065504941403 53.561 1.0004 53.561 53.177 54.178 0 111 33 5 0.953852830145178 0.00677963030233062 0.0593945370588945 1.2579E-10 1 12485 193.54 167.3 3 66707000 77340 76407 81305 75213 65029 88844 74777 84407 87227 62176 73199 72172 81461 77518 67103 88506 75989 86712 85539 60500 1 1 1 1 1 1 1 1 1 1 6143 235 5404 5756 6830 6830 406 YNLDASEEEDSNKKK 15 Phospho (STY) _YNLDAS(ph)EEEDSNKKK_ YNLDAS(1)EEEDSNKKK Y(-93.92)NLDAS(40.6)EEEDS(-40.6)NKKK 0 0 1 2 O95218 O95218 O95218 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 692.366149902344 4 463.201743 1848.77787 37408.7518036123 1.2531 0.00058044 494740 229.16 494740 229.16 692.615655351264 51.674 1.2953 51.674 51.312 52.607 0 132 44 5 0.992339517799128 0.00280208953713854 0.0109984102172212 3.8215E-07 1 11991 158.44 143.35 3 138060000 31030 30257 36631 26890 34072 31099 39765 33485 28584 5676.3 29383 28564 36543 27883 34798 31025 39898 33667 28678 6119.9 1 1 1 1 1 1 1 1 1 1 6144 235 5405 5757 6831 6831 406 YNLSAGTIK 9 Phospho (STY) _YNLS(ph)AGTIK_ YNLS(0.995)AGT(0.005)IK Y(-68.61)NLS(23.02)AGT(-23.02)IK 0 0 1 0 Q6P0N0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 752.914978027344 2 523.74954 1045.48453 36380.4547381407 1.9637 0.0010285 437540 229.16 437550 229.16 752.912781755904 69.06 0.4165 69.06 68.763 69.179 -1.4211E-14 28 13 3 0.955681329499118 0.00049381730802496 0.011118972167403 0.00051456 1 16205 110.8 68.591 3 6214400 21940 14271 24357 13652 14631 27003 16483 19029 14310 12105 20770 13478 24271 14270 15445 26393 16630 19761 14212 11838 1 1 1 1 1 1 1 1 1 1 6145 1252 5406 5758 6832 6832 2219 YNTEGRVSPSPSQESLSSSK 20 Phospho (STY) _YNTEGRVS(ph)PSPSQESLSSSK_ YNTEGRVS(0.995)PS(0.004)PS(0.001)QESLSSSK Y(-86.76)NT(-42.54)EGRVS(23.79)PS(-23.79)PS(-31.68)QES(-56.6)LS(-86.22)S(-87.83)S(-94.97)K 0 0 1 1 Q5JSH3 Q5JSH3 Q5JSH3 WDR44 WD repeat-containing protein 44 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 893.4404296875 3 740.665388 2218.97434 33514.6158341104 1.3475 0.00099804 206270 152.77 206270 152.78 893.440049982557 48.738 0.40506 48.738 48.564 48.969 0 30 13 3 0.954781653237509 0.000918945927417464 0.00909117907881615 1.7618E-08 1 11312 171.94 148.55 9 25889000 12023 20850 14995 19965 23260 13461 28791 21406 22242 11617 11388 19691 15040 20449 23188 13905 28862 21514 22224 11434 1 1 1 1 1 1 1 1 1 1 6146 1167 5407 5759 6833 6833 2022 YPEPERPSSR 10 Phospho (STY) _YPEPERPSS(ph)R_ YPEPERPS(0.111)S(0.889)R Y(-78.25)PEPERPS(-9.02)S(9.02)R 0 0 1 1 O15027 O15027 O15027 SEC16A Protein transport protein Sec16A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 763.8642578125 2 649.282267 1296.54998 36345.3607492793 1.345 0.00087327 176470 114.58 176480 114.58 763.864081828332 35.079 0.5275 35.079 34.803 35.33 0 40 17 3 0.957351774426068 0.000601712014169056 0.00952935243913157 0.0078078 1 7863 85.274 60.134 3 15181000 15027 10761 14855 11333 14281 17081 13767 13976 10553 5005.1 14219 10169 14960 11694 14516 16835 13951 14290 10549 5036.4 1 1 1 1 1 1 1 1 1 1 6147 75 5408 5760 6834 6834 133 YPIEHGIITNWDDMEK 16 Oxidation (M) _YPIEHGIITNWDDM(ox)EK_ YPIEHGIITNWDDM(1)EK YPIEHGIITNWDDM(99.34)EK 0 1 0 0 P63267;P68133;P68032;P62736 P63267 P63267 ACTG2;ACTA1;ACTC1;ACTA2 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 812.750549316406 3 659.640136 1975.89858 34237.461824314 1.7404 0.001148 231610 152.78 231610 152.78 812.41652802707 76.345 0.55183 76.345 76.095 76.647 0 67 18 5 0.965927336342883 0.00378708100605415 0.0931706951498083 0.00080237 1 17896 99.344 80.511 1 15572000 10401 7169.4 9940.1 7671.7 12285 9848.4 12706 10108 7307.2 18810 9840.7 6775.5 10065 7881.4 12330 9813 12765 10695 7439 17946 1 1 1 1 1 1 1 1 1 1 6148 766 5409 5761 6835 6835 103 YPSLGQKPGGSDFLMK 16 Phospho (STY) _YPS(ph)LGQKPGGSDFLMK_ YPS(1)LGQKPGGSDFLMK Y(-44.93)PS(44.93)LGQKPGGS(-52.85)DFLMK 0 0 1 1 O43768 O43768 O43768 ENSA Alpha-endosulfine MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 831.780395507813 3 602.282834 1803.82667 35002.0759323183 2.0149 0.0012136 380490 229.16 380490 229.16 831.445530193027 86.808 0.55165 86.808 86.533 87.085 -1.4211E-14 45 18 4 0.986304385603837 0.00226378746170714 0.0275353105090065 0.00012903 1 20246 101.75 84.506 3 19355000 17976 19167 17610 18275 18633 19216 21699 20175 21478 17351 17009 18102 17772 18833 18892 19264 21935 20722 21201 16805 1 1 1 1 1 1 1 1 1 1 6149 128 5410 5762 6836 6836 226 YPSPPMGSVSAPNLPTAEDNLEYVR 25 Oxidation (M),Phospho (STY) _YPS(ph)PPM(ox)GSVSAPNLPTAEDNLEYVR_ YPSPPM(1)GSVSAPNLPTAEDNLEYVR YPS(1)PPMGSVSAPNLPTAEDNLEYVR YPSPPM(181.95)GSVSAPNLPTAEDNLEYVR Y(-60.39)PS(44.25)PPMGS(-44.25)VS(-99.44)APNLPT(-158.51)AEDNLEY(-179.27)VR 0 1 1 0 P46109 P46109 P46109 CRKL Crk-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1010.47808837891 3 934.089369 2799.24628 30421.572964254 1.3551 0.0012658 81778 76.388 81779 76.389 1010.81061237974 83.854 0.80814 83.854 83.293 84.102 0 91 27 5 0.886938542419668 0.00293314634816676 0.0585588019881373 6.4538E-12 1 19558 181.95 151.55 6 19742000 2458.5 2630.6 2649.9 3515.4 2771.6 1764.9 2602.8 2878.9 2682.8 17024 2327.1 2490.1 2658.5 3527.4 2803.1 1893.2 2659.7 3357.5 2643.7 16096 1 1 1 1 1 1 1 1 1 1 6150 608 5411 5763 6837 6837 80 1003 YPSPPMGSVSAPNLPTAEDNLEYVR 25 Phospho (STY) _YPS(ph)PPMGSVSAPNLPTAEDNLEYVR_ YPS(1)PPMGSVSAPNLPTAEDNLEYVR Y(-61.96)PS(48.03)PPMGS(-48.03)VS(-91.38)APNLPT(-168.9)AEDNLEY(-189.65)VR 0 0 1 0 P46109 P46109 P46109 CRKL Crk-like protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1005.48150634766 3 928.75773 2783.25136 30659.6022822783 1.7077 0.0015861 82247 76.387 82249 76.389 1005.4793600503 90.349 0.95115 90.349 89.956 90.907 0 103 32 5 0.981824217427193 0.00618107782642216 0.185438511522602 4.0507E-12 1 21020 192.77 174.23 6 49919000 2235.1 3670 1733.1 3755.4 2667 2157.6 2703.9 4212 3047.1 25564 2113.1 3467.4 1785.5 3825.1 2652.2 2307.9 2759.9 4915.6 2992 24169 1 1 1 1 1 1 1 1 1 1 6151 608 5411 5764 6838 6838 1003 YPSSISSSPQKDLTQAK 17 Phospho (STY) _YPSSISSS(ph)PQKDLTQAK_ YPSSIS(0.001)S(0.049)S(0.951)PQKDLTQAK Y(-85.42)PS(-59.93)S(-53.4)IS(-32.47)S(-12.92)S(12.92)PQKDLT(-73.3)QAK 0 0 1 1 Q14157 Q14157 Q14157 UBAP2L Ubiquitin-associated protein 2-like MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 652.104614257813 4 479.980486 1915.89284 39493.1091405624 2.2612 0.0010853 358080 171.87 358080 171.87 652.103337400906 63.738 0.57378 63.738 63.433 64.007 0 60 19 4 0.781705293634869 0.00220665734950002 0.02170367836286 3.5669E-07 1 14948 150.65 129.99 7 23314000 10193 9466.4 10665 9397.2 6456.1 10811 5938.6 9670.8 10204 4783.2 9647 8942.2 10659 9675.7 6796.9 10768 6186.6 9888.8 9887.8 4727.8 1 1 1 1 1 1 1 1 1 1 6152 993 5412 5765 6839 6839 1679;1680;1681 YQDEVFGGFVTEPQEESEEEVEEPEER 27 Phospho (STY) _YQDEVFGGFVTEPQEES(ph)EEEVEEPEER_ YQDEVFGGFVTEPQEES(1)EEEVEEPEER Y(-121.03)QDEVFGGFVT(-70.28)EPQEES(70.28)EEEVEEPEER 0 0 1 0 Q13283 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1176.17016601563 3 1099.44867 3295.32419 28449.7028936592 1.2954 0.0014242 69478 76.387 69479 76.389 1176.1709755183 91.162 7.4232 91.162 90.279 97.702 -1.4211E-14 1087 257 9 0.967305651322906 0.00322737913779708 0.0247373701681353 9.9948E-08 7 22097 157.26 137.57 3 2719600000 6695.5 7915.5 5981.5 8099.1 7282 8190.9 6803.1 16506 7858.5 261280 6333 7478.6 6079.1 8306.2 7307.2 8802.4 6976.9 24108 7709.2 246410 7 7 7 7 7 7 7 7 7 7 6153 943 5413 5766 6840;6841;6842;6843;6844;6845;6846 6844 1568;4530 YQDEVFGGFVTEPQEESEEEVEEPEER 27 Phospho (STY) _YQDEVFGGFVT(ph)EPQEESEEEVEEPEER_ YQDEVFGGFVT(0.5)EPQEES(0.5)EEEVEEPEER Y(-66.34)QDEVFGGFVT(0)EPQEES(0)EEEVEEPEER 0 0 1 0 Q13283 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1764.75268554688 2 1648.66937 3295.32419 23766.7734505675 1.1267 0.0018576 69499 114.58 69500 114.58 1763.75354706747 91.12 0.95018 91.12 90.789 91.74 0 101 32 5 0.85321537292142 0.000285682858690656 0.00892859200158424 0.0002158 1 21315 104.44 91.811 3 32668000 0 0 194.75 0 0 0 0 132.4 0 9262 0 0 182.52 0 0 0 0 406.76 0 8724.3 0 0 1 0 0 0 0 1 0 1 6154 943 5413 5766 6847 6847 1568;4530 YQDEVFGGFVTEPQEESEEEVEEPEER 27 Phospho (STY) _YQDEVFGGFVTEPQEES(ph)EEEVEEPEER_ YQDEVFGGFVTEPQEES(1)EEEVEEPEER Y(-122.07)QDEVFGGFVT(-73.21)EPQEES(73.21)EEEVEEPEER 0 0 1 0 Q13283 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 882.381530761719 4 824.838324 3295.32419 33139.8851307752 1.5004 0.0012376 69457 57.29 69458 57.292 882.379993351936 91.181 4.206 91.181 90.42 94.626 0 673 145 8 0.996657110711083 0.0271612231629412 0.327103218645949 1.5277E-07 3 21339 144.2 129.03 3 1000500000 8695.1 9857.9 5944.8 9419.6 9612.4 9587 8276.1 13393 7769.4 112280 8217.5 9309.9 6186.6 9701.2 9518.8 9861.2 8474.7 16670 7687.5 106030 3 3 3 3 3 3 3 3 3 3 6155 943 5413 5766 6848;6849;6850 6848 1568;4530 YQDEVFGGFVTEPQEESEEEVEEPEER 27 Phospho (STY) _YQDEVFGGFVTEPQEES(ph)EEEVEEPEER_ YQDEVFGGFVT(0.027)EPQEES(0.973)EEEVEEPEER Y(-53.42)QDEVFGGFVT(-15.61)EPQEES(15.61)EEEVEEPEER 0 0 1 0 Q13283 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1176.17114257813 3 1099.44867 3295.32419 30360.8473049233 1.9023 0.0020915 69478 76.387 69480 76.389 1176.50414900476 100.21 0.47654 100.21 100.11 100.59 0 20 16 2 0.973360186756672 0.00146125044215185 0.0624509105846262 0.014276 1 23395 64.701 49.997 3 68858000 4267.9 5421.4 5051.5 2127.4 6655.7 1879.8 6322.9 7479.7 4783 69764 4041.5 5102.6 5060.6 2381.5 6653.4 2096.9 6409.9 9387.8 4784.7 65864 1 1 1 1 1 1 1 1 1 1 6156 943 5413 5766 6851 6851 1568;4530 YQESPGIQMK 10 Phospho (STY) _YQES(ph)PGIQMK_ YQES(1)PGIQMK Y(-58.76)QES(58.76)PGIQMK 0 0 1 0 Q9UHI6 Q9UHI6 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 573.625915527344 3 420.84919 1259.52574 41565.9667012977 1.2591 0.00052987 363020 152.78 363020 152.78 573.624664584708 60.616 0.52413 60.616 60.369 60.893 0 53 17 4 0.866829383004792 0.00205270926097002 0.0280020684889938 0.00023353 1 14204 106.32 79.186 2 16186000 10578 11399 11024 10265 8129.5 11123 8438.1 10533 12960 4085.1 10011 10762 11040 10622 8429.4 11111 8698.3 10711 12596 4090.3 1 1 1 1 1 1 1 1 1 1 6157 2148 5414 5767 6852 6852 3871 YQIEDDEDD 9 Unmodified _YQIEDDEDD_ 0 0 0 0 Q9UNS1 Q9UNS1 Q9UNS1 TIMELESS Protein timeless homolog MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 685.793518066406 2 571.212023 1140.40949 38859.10163698 1.1049 0.00063111 200590 114.58 200590 114.58 685.793213867056 50.734 0.40212 50.734 50.562 50.964 0 19 13 2 0.98114664266559 0.000400941850804765 0.0114681226217855 1.1713E-05 1 11806 160.75 145.66 1 8739900 13896 12173 13428 11442 11141 13261 9483.9 12185 12181 6863 13148 11495 13517 11823 11420 13210 9807.2 12471 11905 6744.3 1 1 1 1 1 1 1 1 1 1 6158 2208 5415 5768 6853 6853 YQKSTELLIR 10 Phospho (STY) _YQKST(ph)ELLIR_ YQKS(0.358)T(0.642)ELLIR Y(-46.24)QKS(-2.54)T(2.54)ELLIR 0 0 1 1 P84243;Q6NXT2;Q71DI3;Q16695;P68431 P84243;Q71DI3 Q71DI3 H3F3A;H3F3C;HIST2H3A;HIST3H3;HIST1H3A Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1t;Histone H3.1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.009155273438 3 444.230399 1329.66937 40595.4691177906 1.6857 0.00074883 343910 152.78 343910 152.78 597.006242492111 66.643 0.54677 66.643 66.374 66.921 0 56 18 4 0.920292674277871 0.00374242743622186 0.0734823974677687 0.0089071 1 15629 90.853 50.377 3 19821000 7686.8 16414 8009.6 14667 10361 8311.7 9439.1 10914 16834 2202.6 7274.9 15496 8073.7 15064 10369 8651.7 9854.9 10913 16297 2326.6 1 1 1 1 1 1 1 1 1 1 6159 790;815 5416 5769 6854 6854 1264;4500 YQNFSKGSR 9 Phospho (STY) _YQNFSKGS(ph)R_ YQNFS(0.041)KGS(0.959)R Y(-50.3)QNFS(-13.71)KGS(13.71)R 0 0 1 1 Q9GZY6 Q9GZY6 Q9GZY6 LAT2 Linker for activation of T-cells family member 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 542.280578613281 3 389.504522 1165.49174 42784.927947459 1.3969 0.00054411 392230 152.78 392230 152.78 542.280440402296 45.131 0.43564 45.131 44.859 45.294 0 39 14 3 0.771027413187704 0.00337330793869211 0.0466592530077669 0.027581 1 10362 51.135 27.385 3 26971000 35015 8346.4 38583 7222.5 11447 37037 13003 19637 9071.8 2127.7 33147 7878.1 38316 7963.5 13237 35579 13054 20436 9117.9 2458 1 1 1 1 1 1 1 1 1 1 6160 1894 5417 5770 6855 6855 3448 YRLSPTLSSTK 11 Phospho (STY) _YRLS(ph)PTLSSTK_ YRLS(0.968)PT(0.032)LSSTK Y(-45.24)RLS(14.81)PT(-14.81)LS(-62.8)S(-84.9)T(-90.11)K 0 0 1 1 Q8NEM0 Q8NEM0 Q8NEM0 MCPH1 Microcephalin MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.665893554688 3 444.890154 1331.64863 40641.2377920379 1.1277 0.00050172 343400 152.78 343400 152.78 597.665543268552 62.281 0.51674 62.281 62.007 62.523 0 66 17 5 0.983745869132537 0.00701229292002462 0.168758080868545 9.5946E-05 1 14613 118.2 88.392 6 48326000 26045 20212 27350 21419 14643 25205 16116 22605 20449 3116.6 24650 19100 27312 21979 15635 25068 16452 22869 19993 3457.8 1 1 1 1 1 1 1 1 1 1 6161 1516 5418 5771 6856 6856 2782 YRSPEPDPYLSYR 13 Phospho (STY) _YRS(ph)PEPDPYLSYR_ YRS(1)PEPDPYLSYR Y(-40.58)RS(40.58)PEPDPY(-99.9)LS(-95.47)Y(-117.48)R 0 0 1 1 P49761 P49761 P49761 CLK3 Dual specificity protein kinase CLK3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 651.644836425781 3 574.922294 1721.74505 39031.8519189191 1.352 0.0007773 132870 76.387 132870 76.388 651.309500359612 60.49 0.667 60.49 60.136 60.803 -7.1054E-15 91 22 5 0.923974894453353 0.00604856722741394 0.0613076476131126 3.6196E-07 1 14150 155.08 130.18 5 50142000 13279 16031 13801 13331 17731 13998 18861 16101 17356 5765.2 12568 15128 13917 13863 17776 14038 19103 16243 17189 5801.3 1 1 1 1 1 1 1 1 1 1 6162 653 5419 5772 6857 6857 1083 YRSPYSGPK 9 Phospho (STY) _YRS(ph)PYSGPK_ Y(0.188)RS(0.811)PY(0.001)SGPK Y(-6.36)RS(6.36)PY(-28.88)S(-51.68)GPK 0 0 1 1 Q14498 Q14498 Q14498 RBM39 RNA-binding protein 39 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 531.612915039063 3 378.837501 1133.49067 42587.685741645 1.4243 0.00053957 403270 152.78 403280 152.78 531.613261942319 41.728 1.2573 41.728 41.311 42.568 -7.1054E-15 169 43 6 0.955103681522243 0.00742391065543939 0.089631800544247 0.00025105 1 9462 115.78 85.527 4 1455700000 25372 31067 27216 29232 24987 28021 27826 26707 31741 3266.9 24015 29338 27277 30107 25532 28131 28295 26938 31153 3694.3 1 1 1 1 1 1 1 1 1 1 6163 1009 5420 5773 6858 6858 1716 YRTSGSDEEQEGAGAINQNVALAIAGNNFNLK 32 Phospho (STY) _YRT(ph)SGSDEEQEGAGAINQNVALAIAGNNFNLK_ YRT(0.463)S(0.463)GS(0.074)DEEQEGAGAINQNVALAIAGNNFNLK Y(-67.19)RT(0)S(0)GS(-7.98)DEEQEGAGAINQNVALAIAGNNFNLK 0 0 1 1 Q8NF50 Q8NF50 Q8NF50 DOCK8 Dedicator of cytokinesis protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 973.732421875 4 858.65204 3430.57906 31767.9981208726 1.6562 0.0014221 133440 114.58 133450 114.58 973.732803678769 96.318 0.49292 96.318 96.087 96.58 -1.4211E-14 57 16 5 0.956361376908115 0.00284802249612847 0.0248679368853893 4.5805E-35 2 22408 311.16 294.08 4 10583000 5302 1823.4 6108.2 2907 4061.7 5736.7 4111.8 6149.7 3490.9 52405 5020.1 1728.7 6079.3 2964.1 4242.8 5727.8 4166 7731.7 3470.8 49488 2 2 2 2 2 2 2 2 2 2 6164 1520 5421 5774 6859;6860 6860 2792;2793;4690 YSDEQLNSGRQSPSQNER 18 Phospho (STY) _YSDEQLNSGRQS(ph)PSQNER_ YSDEQLNS(0.003)GRQS(0.979)PS(0.018)QNER Y(-125.31)S(-100.97)DEQLNS(-25.41)GRQS(17.29)PS(-17.29)QNER 0 0 1 1 P25054 P25054 P25054 APC Adenomatous polyposis coli protein MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 802.359497070313 3 725.641466 2173.90257 34926.6422401918 1.0365 0.00075211 105270 76.387 105270 76.388 802.029250274516 34.394 0.23863 34.394 34.282 34.52 0 18 7 3 0.977203095141945 0.00149193222491814 0.0191633381460734 7.6544E-08 1 7710 164.69 133.42 5 18360000 8565.7 11819 9733.4 11084 10610 9152.1 9448.8 11181 12254 3203.4 8109.8 11160 9742.3 11395 10702 9291.3 9750.7 11233 11972 3275.1 1 1 1 1 1 1 1 1 1 1 6165 472 5422 5775 6861 6861 786 YSEEGLSPSK 10 Phospho (STY) _YSEEGLS(ph)PSK_ YSEEGLS(0.982)PS(0.017)K Y(-57.54)S(-46.1)EEGLS(17.5)PS(-17.5)K 0 0 1 0 Q9UIF9 Q9UIF9 Q9UIF9 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 818.408325195313 2 588.744651 1175.47475 35200.4334067679 1.649 0.00097082 389240 229.16 389240 229.16 817.907917975752 53.227 0.47224 53.227 53.092 53.564 0 35 15 3 0.968698101754198 0.000473667558814854 0.00446812910517964 0.0036369 1 12393 95.094 40.896 4 32711000 36085 31836 38193 33368 17261 39576 17906 30593 33768 11136 34153 30083 38082 34268 18777 39300 18630 31371 32646 11194 1 1 1 1 1 1 1 1 1 1 6166 2157 5423 5776 6862 6862 3883 YSGAYGASVSDEELK 15 Phospho (STY) _YS(ph)GAYGASVSDEELK_ YS(1)GAYGASVSDEELK Y(-47.9)S(47.9)GAY(-56.47)GAS(-52.95)VS(-107.15)DEELK 0 0 1 0 Q9NX63 Q9NX63 Q9NX63 CHCHD3 MICOS complex subunit MIC19 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 705.342712402344 3 552.566064 1654.67636 37257.7587395726 2.1572 0.001192 276480 152.77 276480 152.77 705.671838780689 69.319 0.66589 69.319 69.003 69.669 0 52 22 3 0.967243401946629 0.00205843260261588 0.0262802679722194 2.8148E-07 1 16293 163 127.77 5 10809000 8520.3 7745.5 9777.8 7928.2 9851.7 9241.6 9042.5 9981.5 8868.2 9768.8 8067.1 7317.9 9772.8 8150.3 9981.5 9232.4 9238.6 10278 8757.6 9429.5 1 1 1 1 1 1 1 1 1 1 6167 2062 5424 5777 6863 6863 3729 YSHSGSSSPDTK 12 Phospho (STY) _YSHSGSS(ph)SPDTK_ YSHS(0.001)GS(0.018)S(0.824)S(0.157)PDTK Y(-68.6)S(-45.62)HS(-29.35)GS(-16.59)S(7.2)S(-7.2)PDT(-49.16)K 0 0 1 0 Q9UQ35 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 597.952209472656 3 444.84164 1331.50309 40696.5440246801 1.5352 0.00068294 343440 152.78 343440 152.78 597.616882464663 29.164 0.29409 29.164 29.016 29.31 0 25 9 4 0.844300861277697 0.00223273801614242 0.0322372151791993 0.0017545 1 6487 96.464 69.791 7 15766000 10645 12180 10985 11203 8629.8 14126 10420 14481 13399 2684.3 10074 11500 11016 11610 8924.8 14039 10602 14593 13094 2862.8 1 1 1 1 1 1 1 1 1 1 6168 2226 5425 5778 6864 6864 4117 YSISLSPPEQQKK 13 Phospho (STY) _YSISLS(ph)PPEQQKK_ YS(0.001)IS(0.027)LS(0.972)PPEQQKK Y(-49.18)S(-29.44)IS(-15.57)LS(15.57)PPEQQKK 0 0 1 1 Q15057 Q15057 Q15057 ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 758.426330566406 3 528.927156 1583.75964 36998.8022065113 2.2364 0.0011829 433260 229.16 433260 229.16 758.0906105809 69.296 1.0843 69.296 68.732 69.816 0 124 36 4 0.974351722617287 0.00101915504060303 0.00934845301108752 0.00010871 1 16195 118.21 94.019 4 14919000 17276 16081 17363 15360 11445 19420 11304 15888 18551 11092 16348 15187 17406 15881 11969 19261 11712 16408 17997 10812 1 1 1 1 1 1 1 1 1 1 6169 1054 5426 5779 6865 6865 1821 YSLSPSK 7 Phospho (STY) _YSLS(ph)PSK_ YS(0.078)LS(0.901)PS(0.022)K Y(-52.97)S(-10.65)LS(10.65)PS(-16.2)K 0 0 1 0 P49792;Q7Z3J3;P0DJD0;P0DJD1;A6NKT7;Q99666;O14715 P49792 P49792 RANBP2;RGPD4;RGPD1;RGPD2;RGPD3;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 660.355346679688 2 431.191326 860.3681 38583.2739610151 2.4658 0.0010632 531460 229.16 531470 229.16 660.354158005611 56.513 0.71086 56.513 56.186 56.897 0 71 23 4 0.947821898993278 0.00244717176284692 0.0692358959522048 0.0013303 1 13156 118.21 69.113 4 134860000 24939 28286 25512 27999 14749 23677 17967 25115 30376 5968 23600 26720 25530 28697 15660 23955 18475 25316 29446 6200.8 1 1 1 1 1 1 1 1 1 1 6170 655 5427 5780 6866 6866 1106 YSLTVAVK 8 Phospho (STY) _Y(ph)SLTVAVK_ Y(0.761)S(0.238)LT(0.001)VAVK Y(5.05)S(-5.05)LT(-27.13)VAVK 0 0 1 0 P42684;P00519 P42684;P00519 P42684 ABL2;ABL1 Abelson tyrosine-protein kinase 2;Tyrosine-protein kinase ABL1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 709.909851074219 2 480.743726 959.472899 36355.5910807453 2.3249 0.0011177 476690 229.16 476690 229.17 709.908526457969 67.914 0.50949 67.914 67.645 68.154 0 29 16 2 0.888009405780028 0.00231390287461831 0.049006523540388 0.0010241 2 15937 101.54 40.782 3 21623000 21293 98756 22395 96324 24096 18901 24605 50124 107160 23667 20153 93278 22509 97807 24437 22837 27282 49782 102240 23445 2 2 2 2 2 2 2 2 2 2 6171 590;281 5428 5781 6867;6868 6867 4867 YSPGMDAYHCVK 12 Phospho (STY) _YS(ph)PGMDAYHCVK_ YS(1)PGMDAYHCVK Y(-38.8)S(38.8)PGMDAY(-74.06)HCVK 0 0 1 0 Q5VTD9 Q5VTD9 Q5VTD9 GFI1B Zinc finger protein Gfi-1b MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 655.972778320313 3 503.196372 1506.56729 38422.2913215638 1.6347 0.00082258 303610 152.78 303610 152.78 655.971886587841 58.832 0.55537 58.832 58.549 59.105 0 59 18 4 0.985717115102198 0.00501013360191034 0.0535807189127307 2.7397E-07 1 13781 150.59 128.06 3 28478000 7886.5 30877 6334.6 26800 20788 9275.7 21944 20068 29120 5219.7 7456.8 29146 6646.9 27485 20265 10225 22478 19869 28428 5379.5 1 1 1 1 1 1 1 1 1 1 6172 1202 5429 5782 6869 6869 2106 YSPKTPPR 8 Phospho (STY) _YSPKT(ph)PPR_ Y(0.001)S(0.017)PKT(0.982)PPR Y(-30.01)S(-17.7)PKT(17.7)PPR 0 0 1 1 P49792;Q7Z3J3;P0DJD0;P0DJD1;A6NKT7 P49792 P49792 RANBP2;RGPD4;RGPD1;RGPD2;RGPD3 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 495.273864746094 3 342.498709 1024.4743 44872.2565636809 0.60356 0.00020672 446060 152.78 446060 152.78 495.274167117433 39.825 0.78412 39.825 39.336 40.12 -7.1054E-15 62 26 4 0.854345129695513 0.00236041129538777 0.0556719331127665 0.033903 1 9033 64.103 35.806 3 16111000 10212 22914 11045 21157 10191 11268 11671 14193 21792 1666.1 9666.3 21636 11066 21672 10422 11775 12086 14173 21073 1897.3 1 1 1 1 1 1 1 1 1 1 6173 655 5430 5783 6870 6870 1102;4473 YSPPAISPLVSEK 13 Phospho (STY) _YSPPAIS(ph)PLVSEK_ YS(0.002)PPAIS(0.998)PLVSEK Y(-49.15)S(-28.11)PPAIS(28.11)PLVS(-38.3)EK 0 0 1 0 Q14694 Q14694 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 643.01904296875 3 489.909214 1466.70581 40316.3556499091 2.0621 0.0010102 311840 152.77 311850 152.78 642.684149275387 83.676 0.63238 83.676 83.353 83.985 0 40 21 3 0.984709382359466 0.00153230514863744 0.0250855995822202 0.0066797 1 19562 82.349 46.327 4 8194100 3629.2 6762.8 4633.6 7239.5 4537 4182.1 5600.9 5274.2 6581.3 5889.3 3437.9 6391.3 4608.9 7355 4625.8 4353.1 5677 5425.5 6452.2 5667.5 1 1 1 1 1 1 1 1 1 1 6174 1024 5431 5784 6871 6871 1750;1751 YSPPAISPLVSEK 13 Phospho (STY) _YS(ph)PPAISPLVSEK_ Y(0.003)S(0.997)PPAISPLVSEK Y(-24.93)S(24.93)PPAIS(-46.48)PLVS(-125.46)EK 0 0 1 0 Q14694 Q14694 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 642.684997558594 3 489.909214 1466.70581 39514.6194285244 1.5713 0.00076977 311850 152.78 311850 152.78 643.019407959349 86.088 1.609 86.088 85.533 87.142 0 165 55 4 0.950366339390315 0.00273099012030352 0.0357282959504966 6.3825E-07 1 20034 139.49 98.091 4 23548000 4612.5 8310.7 4802.9 8598.6 5051 5064.8 6081 6074.5 7824.6 5372.2 4365.3 7852.4 4830.3 8754.4 5127.3 5257.2 6188.2 6215.9 7646.6 5199.2 1 1 1 1 1 1 1 1 1 1 6175 1024 5431 5784 6872 6872 1750;1751 YSPPIQR 7 Phospho (STY) _YS(ph)PPIQR_ Y(0.173)S(0.827)PPIQR Y(-6.8)S(6.8)PPIQR 0 0 1 0 Q8IYB3 Q8IYB3 Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 585.299255371094 2 470.718043 939.421532 41458.4843935508 0.60229 0.00028351 243420 114.58 243420 114.58 585.300280757783 47.542 1.475 47.542 46.742 48.217 0 161 54 4 0.98666648599725 0.00696987395142094 0.0570327865178069 0.0023729 1 11008 101.46 58.377 2 162890000 45726 37305 47096 33038 109320 48375 130900 67718 37023 4073.1 43273 35216 48147 34429 107480 48054 129640 67299 40512 5402.6 1 1 1 1 1 1 1 1 1 1 6176 1436 5432 5785 6873 6873 2660 YSPPRDDDKVDNQAK 15 Phospho (STY) _YS(ph)PPRDDDKVDNQAK_ Y(0.033)S(0.967)PPRDDDKVDNQAK Y(-14.62)S(14.62)PPRDDDKVDNQAK 0 0 1 2 Q14669 Q14669 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 629.576843261719 4 457.703182 1826.78362 39937.9486382023 2.1018 0.00096202 375510 171.87 375510 171.87 629.825598209131 44.983 0.89713 44.983 44.426 45.323 0 85 30 4 0.877199297872677 0.00143000548077791 0.0291387926490926 0.0053085 1 10380 87.208 66.394 2 16974000 13307 9895.8 15367 10519 14824 15089 16808 14701 11587 2580 12599 9351.8 15352 10836 15099 14921 16871 14839 11654 2769.6 1 1 1 1 1 1 1 1 1 1 6177 1014 5433 5786 6874 6874 1725 YSPRHSR 7 2 Phospho (STY) _YS(ph)PRHS(ph)R_ Y(0.09)S(0.91)PRHS(1)R Y(-10.04)S(10.04)PRHS(47.49)R 0 0 2 1 Q07955 Q07955 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 646.281494140625 2 531.699531 1061.38451 39070.4887812541 1.953 0.0010384 215500 114.58 215500 114.58 646.281166415532 23.816 1.3325 23.816 23.324 24.656 0 106 45 4 0.996316804693189 0.00404213779107524 0.135922927425817 0.02518 2 5276 61.48 37.259 3 23470000 4585.5 4791 5912.3 4154.6 4597.9 4885.9 5834.5 5447.1 5802.8 15703 4344 4522.3 5863.3 4316.4 4761 4901.3 5878.7 5915.2 5727 14912 2 2 2 2 2 2 2 2 2 2 6178 884 5434 5787 6875;6876 6875 1435;1438 YSPSNGPPQPTPPPHYR 17 Phospho (STY) _YS(ph)PSNGPPQPTPPPHYR_ YS(0.807)PS(0.193)NGPPQPTPPPHYR Y(-73.5)S(6.2)PS(-6.2)NGPPQPT(-167.14)PPPHY(-203.29)R 0 0 1 0 O75081 O75081 O75081 CBFA2T3 Protein CBFA2T3 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 734.685302734375 3 657.963152 1970.86763 36148.8522225367 1.4874 0.00097868 116100 76.387 116100 76.388 734.684289892756 46.445 1.0721 46.445 46.05 47.122 0 125 36 4 0.954352660085895 0.00390797920359719 0.0430884756821928 1.6549E-12 2 10679 212.85 198.76 5 60946000 17784 18597 17449 20525 24351 17866 26223 22982 21257 19515 16827 17579 17678 20914 24326 18127 26466 23443 21185 18907 2 2 2 2 2 2 2 2 2 2 6179 166 5435 5788 6877;6878 6877 287 YSPSQNSPIHHIPSR 15 Phospho (STY) _YSPSQNS(ph)PIHHIPSR_ YS(0.024)PS(0.06)QNS(0.916)PIHHIPSR Y(-92.65)S(-15.76)PS(-11.83)QNS(11.83)PIHHIPS(-75.95)R 0 0 1 0 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 677.001098632813 3 600.612342 1798.8152 37603.7264423608 1.733 0.0010409 127180 76.388 127190 76.389 677.334540952896 41.873 0.4832 41.873 41.597 42.08 0 38 16 3 0.980174834578134 0.00214812252811862 0.0196436732194426 3.8962E-07 1 9552 157.99 123.06 5 23490000 10767 9569.2 10193 9610.2 7579.4 13174 9943.5 11816 9379.8 4316.1 10187 9039.9 10269 9922.2 7878.8 13037 9992.7 12035 9279 4337.5 1 1 1 1 1 1 1 1 1 1 6180 2072 5436 5789 6879 6879 3754;3755 YSPSQNSPIHHIPSR 15 2 Phospho (STY) _YS(ph)PSQNS(ph)PIHHIPSR_ Y(0.021)S(0.965)PS(0.015)QNS(0.999)PIHHIPSR Y(-16.72)S(16.72)PS(-18.26)QNS(33.28)PIHHIPS(-62.64)R 0 0 2 0 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 703.989929199219 3 627.267785 1878.78153 37258.5760381946 1.605 0.0010068 121780 76.388 121780 76.389 703.655766515066 46.867 1.1871 46.867 46.05 47.237 0 150 40 6 0.915582774016458 0.00631436241882102 0.0658575981256147 3.709E-07 1 10778 163.8 139.91 10 241440000 26971 22215 26246 25089 24277 31551 26885 28484 24911 5944.1 25518 21002 26450 25689 24788 31310 27187 28869 24664 6256.3 1 1 1 1 1 1 1 1 1 1 6181 2072 5436 5790 6880 6880 3754;3755 YSPSQNSPIHHIPSRR 16 2 Phospho (STY) _YS(ph)PSQNS(ph)PIHHIPSRR_ YS(0.999)PS(0.001)QNS(1)PIHHIPSRR Y(-39.05)S(29.83)PS(-29.83)QNS(63.67)PIHHIPS(-63.67)RR 0 0 2 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 567.27001953125 4 509.727936 2034.88264 41414.5387692575 1.2538 0.00063912 112390 57.291 112400 57.291 567.269402844513 41.058 0.70991 41.058 40.714 41.424 0 79 24 4 0.877149392117 0.00272243295872418 0.0211766818130303 2.2228E-08 1 9346 175.02 156.19 10 25445000 8568.8 10839 9873 9702.1 8354.7 9977.8 10682 11460 12341 3045.5 8113.1 10233 9852.4 10036 8602.5 10013 10807 11530 12107 3132.9 1 1 1 1 1 1 1 1 1 1 6182 2072 5437 5791 6881 6881 3754;3755 YSPSQNSPIHHIPSRR 16 2 Phospho (STY) _YS(ph)PSQNS(ph)PIHHIPSRR_ Y(0.259)S(0.695)PS(0.401)QNS(0.545)PIHHIPS(0.1)RR Y(-3.64)S(3.64)PS(-1.25)QNS(1.25)PIHHIPS(-6.08)RR 0 0 2 1 Q9NYF8 Q9NYF8 Q9NYF8 BCLAF1 Bcl-2-associated transcription factor 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 755.691528320313 3 679.301489 2034.88264 36070.0934979711 1.4611 0.00099252 112450 76.387 112450 76.388 756.023477785988 41.094 0.74048 41.094 40.714 41.455 0 78 25 4 0.478224382008517 0.00109141214237152 0.0159759779798595 0.010114 1 9403 70.828 53.546 10 30175000 16275 14757 16106 14311 11204 18792 13607 15730 13715 10608 15400 13938 16173 14793 11693 18618 13738 16217 13528 10352 1 1 1 1 1 1 1 1 1 1 6183 2072 5437 5791 6882 6882 3754;3755 YSPTSPK 7 Phospho (STY) _YSPTS(ph)PK_ YSPT(0.044)S(0.956)PK Y(-67.78)S(-45.33)PT(-13.4)S(13.4)PK 0 0 1 0 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 659.347961425781 2 430.183501 858.35245 38349.6789133543 2.4719 0.0010634 532710 229.16 532710 229.16 659.346523893168 44.145 1.1308 44.145 43.698 44.829 -7.1054E-15 110 34 5 0.918434658519456 0.00872915321984852 0.290861468940382 0.0021846 1 10107 104.48 48.917 4 170550000 123340 81102 121140 69511 64275 117800 81458 95938 80330 9368.7 116700 76548 121440 72855 68826 115660 82061 97362 79309 11042 1 1 1 1 1 1 1 1 1 1 6184 470 5438 5792 6883 6883 776;777 YSPTSPKYSPTSPK 14 2 Phospho (STY) _YS(ph)PTSPKYS(ph)PTSPK_ Y(0.005)S(0.747)PT(0.094)S(0.155)PKY(0.002)S(0.45)PT(0.446)S(0.1)PK Y(-18.96)S(6.9)PT(-9.15)S(-6.9)PKY(-26.76)S(0)PT(0)S(-6.63)PK 0 0 2 1 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 796.400817871094 3 567.238721 1698.69433 35677.2400915688 2.3521 0.0013342 403990 229.16 404000 229.16 796.400644240728 56.767 0.47231 56.767 56.513 56.985 7.1054E-15 25 15 2 0.463772117626623 0.0011804145780296 0.0207722124192252 0.012407 1 13270 71.148 54.482 28 14186000 19947 25262 20398 23413 19570 20951 19644 21837 24200 28080 18877 23854 20504 24113 19914 21174 20117 22716 23685 26946 1 1 1 1 1 1 1 1 1 1 6185 470 5439 5793 6884 6884 776;777;778;4429 YSPTSPTYSPTSPK 14 Phospho (STY) _YSPTSPTYS(ph)PTSPK_ YSPTSPT(0.007)YS(0.976)PT(0.017)SPK Y(-108.69)S(-75.08)PT(-67.86)S(-60.43)PT(-21.71)Y(-67.23)S(17.64)PT(-17.64)S(-37.7)PK 0 0 1 0 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.678283691406 3 531.567516 1591.68072 37403.2707901624 1.7688 0.00094024 287400 152.78 287410 152.78 684.342553581841 56.893 0.82274 56.893 56.308 57.131 -7.1054E-15 96 27 5 0.961360557595321 0.00343475163553391 0.0967113114458286 1.2617E-05 1 13224 136.34 90.093 9 99401000 15931 12923 15144 12349 16425 16831 18481 16313 13239 15931 15072 12205 15314 12786 16616 16694 18570 16863 13285 15379 1 1 1 1 1 1 1 1 1 1 6186 470 5440 5794 6885 6885 779;780;4430 YSPTSPTYSPTSPK 14 Phospho (STY) _YSPTS(ph)PTYSPTSPK_ YS(0.018)PT(0.121)S(0.856)PT(0.005)YSPTSPK Y(-62.43)S(-16.78)PT(-8.51)S(8.51)PT(-22.12)Y(-54.65)S(-62.06)PT(-88.74)S(-93.02)PK 0 0 1 0 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 684.344116210938 3 531.567516 1591.68072 36663.2539169406 1.757 0.00093399 287410 152.78 287410 152.78 684.343103233788 57.515 0.68525 57.515 57.19 57.875 0 103 23 6 0.8799166309168 0.00660167495229243 0.139291690656038 9.1679E-05 1 13425 120.54 88.842 9 104150000 22460 18041 24874 19887 29169 26132 35707 27807 20768 11260 21262 17053 24973 20407 29426 25957 35624 28166 21126 11246 1 1 1 1 1 1 1 1 1 1 6187 470 5440 5794 6886 6886 779;780;4430 YSPTSPTYSPTSPK 14 2 Phospho (STY) _YSPTS(ph)PTYSPT(ph)SPK_ YS(0.274)PT(0.263)S(0.462)PTYS(0.37)PT(0.621)S(0.009)PK Y(-32.49)S(-1.79)PT(-2.52)S(1.79)PT(-30.31)Y(-36.21)S(-1.96)PT(1.96)S(-17.58)PK 0 0 2 0 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 711.332946777344 3 558.22296 1671.64705 37069.9449963401 1.8562 0.0010362 273680 152.78 273680 152.78 710.997687065636 59.211 1.644 59.211 58.463 60.107 -7.1054E-15 155 56 4 0.833804650546337 0.0025652036615549 0.0645536544366508 0.00011064 1 13822 128.59 100.29 36 26623000 16677 14648 15897 14648 10865 17829 9787.8 14208 18127 8370.5 15778 13837 15989 15091 11316 17699 10243 14645 17533 8210.6 1 1 1 1 1 1 1 1 1 1 6188 470 5440 5795 6887 6887 779;780;4430 YSPTSPTYSPTSPVYTPTSPK 21 Phospho (STY) _YSPTSPTYSPTSPVYTPT(ph)SPK_ YSPTSPTYSPTSPVYT(0.098)PT(0.785)S(0.116)PK Y(-131.13)S(-107.87)PT(-101.97)S(-95.27)PT(-88.3)Y(-93.94)S(-75.05)PT(-54.81)S(-48.05)PVY(-32.25)T(-9.03)PT(8.29)S(-8.29)PK 0 0 1 0 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 933.133544921875 3 780.022402 2337.04538 32688.3586635169 2.0518 0.0016004 195860 152.78 195860 152.78 933.465376169224 70.984 0.83463 70.984 70.567 71.401 0 116 28 6 0.992493872742663 0.00695618463442877 0.110772908342224 8.7799E-08 1 16687 158.65 137.63 13 46072000 14783 18283 16758 15314 12827 16466 15558 19785 17200 60009 13996 17254 16717 15923 13289 16607 15751 21525 16901 56964 1 1 1 1 1 1 1 1 1 1 6189 470 5441 5796 6888 6888 781;782;4431 YSPTSPTYSPTSPVYTPTSPK 21 Phospho (STY) _YSPTS(ph)PTYSPTSPVYTPTSPK_ YS(0.027)PT(0.158)S(0.657)PT(0.158)YSPTSPVYTPTSPK Y(-70.38)S(-13.84)PT(-6.18)S(6.18)PT(-6.18)Y(-50.07)S(-51.7)PT(-74.67)S(-90.89)PVY(-137.1)T(-141.8)PT(-153.57)S(-157.87)PK 0 0 1 0 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 933.132568359375 3 780.022402 2337.04538 32403.8535678948 2.077 0.0016201 195860 152.77 195860 152.78 933.130588230124 72.374 0.76844 72.374 71.895 72.663 1.4211E-14 72 25 5 0.987701754189341 0.00441899490900563 0.0240794402308014 1.8175E-10 2 16982 175.97 149.24 13 44220000 22631 20247 24214 20094 22701 30010 28334 28855 21199 103490 21421 19125 24283 20801 23199 29818 28375 32106 21220 98111 2 2 2 2 2 2 2 2 2 2 6190 470 5441 5796 6889;6890 6889 781;782;4431 YSPTSPTYSPTSPVYTPTSPK 21 2 Phospho (STY) _YSPTS(ph)PTYSPTSPVYTPTS(ph)PK_ YS(0.011)PT(0.081)S(0.614)PT(0.288)YS(0.006)PTSPVYT(0.011)PT(0.263)S(0.726)PK Y(-52.79)S(-17.38)PT(-8.8)S(3.28)PT(-3.28)Y(-39.29)S(-19.96)PT(-59.14)S(-78.97)PVY(-62.76)T(-17.96)PT(-4.4)S(4.4)PK 0 0 2 0 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 959.789245605469 3 806.677845 2417.01171 31952.5326845875 1.9477 0.0015712 189390 152.78 189390 152.78 959.45521405214 74.738 1.1079 74.738 74.041 75.149 0 71 37 4 0.972792596523549 0.00238855256841005 0.0559088464084613 5.8079E-08 1 17560 163.14 144.42 78 14362000 7420.5 9538.1 7248.8 9720.6 9527.5 8769 11596 10859 12492 33492 7021 9011.3 7340.8 9954.3 9564.1 8921.3 11729 11820 12288 31788 1 1 1 1 1 1 1 1 1 1 6191 470 5441 5797 6891 6891 781;782;4431 YSPTSPTYSPTTPK 14 Phospho (STY) _YSPTS(ph)PTYSPTTPK_ YS(0.014)PT(0.192)S(0.645)PT(0.148)YSPTTPK Y(-39.54)S(-16.55)PT(-5.26)S(5.26)PT(-6.4)Y(-31.91)S(-44.78)PT(-76.52)T(-79.97)PK 0 0 1 0 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 689.351501464844 3 536.2394 1605.69637 37478.0845401557 2.0024 0.0010738 284900 152.78 284900 152.78 689.014835303873 58.452 0.70541 58.452 58.111 58.817 0 82 23 5 0.967265411033142 0.0050384270836531 0.0583225370640552 0.0017528 1 13656 96.956 76.003 9 101920000 18213 15615 19363 15880 15439 19282 14832 18581 17237 5594.8 17238 14753 19382 16343 15893 19177 15193 18834 16906 5698.2 1 1 1 1 1 1 1 1 1 1 6192 470 5442 5798 6892 6892 783 YSQGDDDGSSSSGGSSVAGSQSTLFKDSPLR 31 Phospho (STY) _YSQGDDDGSSSSGGSSVAGSQSTLFKDS(ph)PLR_ YSQGDDDGSSSSGGSSVAGSQSTLFKDS(0.999)PLR Y(-332.85)S(-302.25)QGDDDGS(-211.48)S(-204.76)S(-189.75)S(-167.22)GGS(-120.07)S(-106.74)VAGS(-54.88)QS(-39.26)T(-33.39)LFKDS(33.39)PLR 0 0 1 1 Q9UH99 Q9UH99 Q9UH99 SUN2 SUN domain-containing protein 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1206.89965820313 3 1053.78439 3158.33134 28655.532169142 2.4763 0.0026095 144980 152.77 144980 152.78 1206.89305104873 68.234 0.43641 68.234 68.035 68.472 0 53 14 5 0.955934162907783 0.00197886283404367 0.0662091832735404 1.4424E-45 1 16011 344.08 317.51 12 12200000 1564.2 1117.4 1789.5 1045.1 1192.4 1521.8 0 2306.7 1058.9 41838 1481 1055.1 1779.4 1085.2 1229.5 1592.7 0 3544 999.92 39449 1 1 1 1 1 1 0 1 1 1 6193 2143 5443 5799 6893 6893 3857 YSSPTAGSAK 10 Phospho (STY) _YSS(ph)PTAGSAK_ YS(0.004)S(0.989)PT(0.007)AGSAK Y(-85.74)S(-24.23)S(21.35)PT(-21.35)AGS(-62.85)AK 0 0 1 0 P28749 P28749 P28749 RBL1 Retinoblastoma-like protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 753.884521484375 2 524.720979 1047.42741 35998.4083108454 2.0802 0.0010915 436730 229.16 436740 229.16 753.883926457565 39.341 0.43034 39.341 39.112 39.543 0 34 14 3 0.895662567722476 0.00151860133818108 0.0539912613471372 1.193E-09 1 8911 192.95 108.95 5 27127000 35255 16368 35288 15983 11664 33148 12494 22135 17051 4124.6 33360 15460 35243 16710 13248 32330 12803 22754 16631 4396.1 1 1 1 1 1 1 1 1 1 1 6194 496 5444 5800 6894 6894 825 YSSSQPEPR 9 Phospho (STY) _YSS(ph)SQPEPR_ YS(0.084)S(0.458)S(0.458)QPEPR Y(-56.43)S(-7.35)S(0)S(0)QPEPR 0 0 1 0 O14757 O14757 O14757 CHEK1 Serine/threonine-protein kinase Chk1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 680.311584472656 2 565.729336 1129.44412 37084.6686451853 1.6269 0.00092038 202540 114.58 202540 114.58 680.311386205067 31.725 0.58621 31.725 31.441 32.027 0 27 19 2 0.964587881287776 0.000551612800511023 0.00589614004161061 0.0026241 1 7087 97.456 63.496 4 8777600 12642 15536 13933 14403 15633 13688 17671 14861 14581 4767 11968 14670 13980 14846 15790 13776 17805 15004 14518 4832.7 1 1 1 1 1 1 1 1 1 1 6195 65 5445 5801 6895 6895 109;110 YSVGSLSPVSASVLK 15 Phospho (STY) _YSVGSLS(ph)PVSASVLK_ YSVGS(0.003)LS(0.997)PVSASVLK Y(-126)S(-48.1)VGS(-25.1)LS(25.1)PVS(-74.93)AS(-124.47)VLK 0 0 1 0 Q9UBU7 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 678.377624511719 3 525.26729 1572.78004 38854.8300783818 2.1075 0.001107 290850 152.77 290850 152.78 678.376356548496 89.854 0.46642 89.854 89.605 90.072 -1.4211E-14 42 15 4 0.890405261520913 0.00303890288181865 0.0479352987059077 5.4482E-08 1 20934 173.51 141.87 6 12412000 5100.3 12781 5529.6 9509.7 4388.6 6641.6 5529.4 8986.7 11559 8605.8 4827.8 12056 5531.5 9917.8 4542.7 6830.9 5738.8 9182.8 11150 8311.4 1 1 1 1 1 1 1 1 1 1 6196 2130 5446 5802 6896 6896 3828;3829 YSVGSLSPVSASVLKK 16 Phospho (STY) _YSVGS(ph)LSPVSASVLKK_ YS(0.001)VGS(0.65)LS(0.344)PVS(0.006)ASVLKK Y(-36.15)S(-29.45)VGS(2.77)LS(-2.77)PVS(-20.67)AS(-42.59)VLKK 0 0 1 1 Q9UBU7 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 797.464904785156 3 567.965611 1700.875 35553.045230624 2.2507 0.0012783 403480 229.16 403480 229.16 797.463948960489 84.452 0.42172 84.452 84.271 84.692 0 43 14 5 0.759980071643458 0.00308701325187389 0.0497002317695659 0.009638 1 19749 78.794 57.237 6 14584000 12812 18894 14378 17685 11564 13922 11544 16199 22525 19815 12129 17841 14353 18172 11912 14188 12053 16757 21760 19033 1 1 1 1 1 1 1 1 1 1 6197 2130 5447 5803 6897 6897 3828;3829 YTGEEDGAGGHSPAPPQTEECLR 23 Phospho (STY) _YTGEEDGAGGHS(ph)PAPPQTEECLR_ YTGEEDGAGGHS(1)PAPPQTEECLR Y(-126.07)T(-96.92)GEEDGAGGHS(74.72)PAPPQT(-74.72)EECLR 0 0 1 0 O94762 O94762 O94762 RECQL5 ATP-dependent DNA helicase Q5 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 923.403381347656 3 846.67948 2537.01661 32985.2734723153 2.231 0.0018889 90221 76.388 90223 76.39 923.400941645752 45.969 0.43868 45.969 45.731 46.17 0 51 14 5 0.98318196422052 0.00233512340380961 0.0384146396776999 5.4658E-09 2 10593 173.36 138.95 4 20112000 14663 15652 15074 14515 12638 17939 14337 16410 16863 9608.2 13877 14779 15128 15028 12995 17828 14581 16809 16532 9427.1 2 2 2 2 2 2 2 2 2 2 6198 214 5448 5804 6898;6899 6898 373 YTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 34 Phospho (STY) _YTLENKEEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK_ YTLENKEEGS(0.021)LS(0.978)DTEADAVSGQLPDPTTNPSAGK Y(-199.15)T(-65.17)LENKEEGS(-16.59)LS(16.59)DT(-33.63)EADAVS(-162.1)GQLPDPT(-238.3)T(-244.03)NPS(-260.29)AGK 0 0 1 1 Q8N1G4 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 1073.53039550781 4 901.157087 3600.59924 30227.8353950785 1.9005 0.0017126 190720 171.87 190730 171.87 1073.28066653248 78.909 0.83874 78.909 78.636 79.474 0 90 28 5 0.968906088941096 0.00300154023269934 0.0427120441418682 8.7907E-35 1 18486 303.87 286.96 9 35537000 3637.2 7754.3 6046.7 6971.6 7723.6 6062.7 8980.8 7506.6 10706 19025 3450.8 7320.7 5973 7191.4 7758.3 6171.4 9128.5 8047 10491 18088 1 1 1 1 1 1 1 1 1 1 6199 1457 5449 5805 6900 6900 2700 YTPASPSSPDFTTWSCAK 18 Phospho (STY) _YTPAS(ph)PSSPDFTTWSCAK_ YT(0.027)PAS(0.914)PS(0.041)S(0.018)PDFTTWSCAK Y(-48.65)T(-15.28)PAS(13.49)PS(-13.49)S(-17.08)PDFT(-70.63)T(-70.05)WS(-86.49)CAK 0 0 1 0 O75808 O75808 O75808 CAPN15 Calpain-15 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 848.068420410156 3 694.955334 2081.84417 34307.8499891188 1.9899 0.0013829 219830 152.77 219840 152.78 848.399376192324 82.483 0.79879 82.483 81.97 82.768 0 52 27 4 0.948911818167712 0.0010512002904776 0.015022862018203 6.7611E-05 1 19327 102.43 82.326 8 9249000 6186.7 8328.8 6542.8 8464.3 6688.8 7690.7 7562.2 8327.9 9412 18731 5855.6 7868.7 6571.2 8670.2 6793.3 7786.6 7706.4 8893.2 9208.4 17830 1 1 1 1 1 1 1 1 1 1 6200 202 5450 5806 6901 6901 352 YTPTSPSYSPSSPEYTPTSPK 21 Phospho (STY) _YTPTSPS(ph)YSPSSPEYTPTSPK_ YT(0.005)PT(0.031)S(0.155)PS(0.785)YS(0.024)PS(0.001)SPEYTPTSPK Y(-96.99)T(-22.08)PT(-14.01)S(-7.04)PS(7.04)Y(-65.21)S(-15.23)PS(-29.98)S(-51.68)PEY(-109.32)T(-106.36)PT(-127.26)S(-132.21)PK 0 0 1 0 P24928 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 938.452514648438 3 785.341911 2353.0039 32165.7532693442 1.5894 0.0012482 194530 152.78 194540 152.78 938.45085903703 64.542 0.52202 64.542 64.3 64.822 0 56 17 4 0.974268233248472 0.00310081033222796 0.0446828039718574 2.614E-08 2 15192 167.88 145.63 13 32473000 21145 20899 24778 18904 18893 27083 23351 25930 22329 29746 20023 19731 24678 19663 19582 26823 23527 26950 22075 28609 2 2 2 2 2 2 2 2 2 2 6201 470 5451 5807 6902;6903 6903 784 YVASYLLAALGGNSSPSAK 19 Phospho (STY) _YVASYLLAALGGNSS(ph)PSAK_ YVASYLLAALGGNS(0.045)S(0.93)PS(0.025)AK Y(-141.22)VAS(-141.02)Y(-135.86)LLAALGGNS(-13.18)S(13.18)PS(-15.74)AK 0 0 1 0 P05387 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 602.82373046875 4 487.990854 1947.93431 40252.1151748607 1.0401 0.00050754 234800 114.58 234800 114.58 602.823432956166 102.29 0.14637 102.29 102.22 102.37 0 15 4 4 0.973612558498073 0.0146562799282166 0.134489708120376 6.616E-08 1 24101 162.82 145.6 6 84606000 4612 11055 5033.9 8315 4502.5 6381.2 7458.8 8408.7 11386 4494.6 4365.7 10428 5043.7 8673.7 4646.1 6516.4 7558 8491.4 11068 4426.8 1 1 1 1 1 1 1 1 1 1 6202 302 5452 5808 6904 6904 498 YVGFGNTPPPQKK 13 Phospho (STY) _YVGFGNT(ph)PPPQKK_ YVGFGNT(1)PPPQKK Y(-72.17)VGFGNT(72.17)PPPQKK 0 0 1 1 Q8N6T3 Q8N6T3 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 551.060791015625 4 378.936621 1511.71738 42989.3985516683 1.1107 0.00042088 453570 171.87 453570 171.87 551.060316327338 62.361 0.58148 62.361 62.122 62.703 0 42 19 3 0.941945874353634 0.0010465423366234 0.0355792301880809 0.0001804 1 14642 101.15 87.725 2 7482000 5405.3 6049.4 5372.4 5675.7 4355 4850 4833.9 6186 7429 1303.8 5114.6 5712.5 5400 5837.1 4488.7 4917.4 4968.5 6192.5 7220.2 1370.9 1 1 1 1 1 1 1 1 1 1 6203 1481 5453 5809 6905 6905 4683 YWHRSLNPR 9 Phospho (STY) _YWHRS(ph)LNPR_ Y(0.001)WHRS(0.999)LNPR Y(-30.44)WHRS(30.44)LNPR 0 0 1 1 P30419;O60551 P30419 P30419 NMT1;NMT2 Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2 MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 513.257873535156 3 436.871428 1307.59245 43589.1827789844 0.70572 0.00030831 174850 76.386 174850 76.387 513.257613091085 43.329 0.37481 43.329 43.09 43.465 -7.1054E-15 31 12 4 0.696046872157835 0.00217620402622292 0.0259785187957482 0.02339 1 9908 54.471 16.282 2 18755000 9589 10226 11626 10656 20979 10104 18941 12858 10016 1534.2 9081.2 9662.8 11700 10906 20700 10190 19134 12837 10262 1742.3 1 1 1 1 1 1 1 1 1 1 6204 517 5454 5810 6906 6906 845 YYGGGSEGGR 10 Phospho (STY) _YYGGGS(ph)EGGR_ YYGGGS(1)EGGR Y(-75.9)Y(-83.51)GGGS(75.9)EGGR 0 0 1 0 P14866 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L MULTI-MSMS PhosMD_TMT_EXPT3_Cancer_SetC_NoBoost_04Sept18_Pippin_REP-18-07-03 656.282409667969 2 541.700578 1081.3866 38318.0763048624 1.7353 0.00094002 211520 114.58 211520 114.58 656.281881736343 35.411 0.41116 35.411 35.24 35.651 0 33 13 3 0.891725085128265 0.00116144491186773 0.0517498590725153 0.00033049 1 7964 111.33 90.5 3 10928000 17361 20728 17576 20983 13357 16835 13224 16660 20214 4025.8 16429 19583 17633 21463 13808 17065 13659 16840 19649 4176.4 1 1 1 1 1 1 1 1 1 1 6205 391 5455 5811 6907 6907 623