Sequence Modifications Mass Mass Fractional Part Protein Groups Proteins Gene Names Protein Names Unique (Groups) Unique (Proteins) Acetyl (Protein N-term) Deamidation (NQ) Oxidation (M) Missed cleavages Identification type 1_1 Identification type 1_2 Identification type 1_3 Identification type 2_1 Identification type 2_2 Identification type 2_3 Identification type 3_1 Identification type 3_2 Experiment 1_1 Experiment 1_2 Experiment 1_3 Experiment 2_1 Experiment 2_2 Experiment 2_3 Experiment 3_1 Experiment 3_2 Retention time Calibrated retention time Charges PEP MS/MS scan number Raw file Score Delta score Intensity Intensity 1_1 Intensity 1_2 Intensity 1_3 Intensity 2_1 Intensity 2_2 Intensity 2_3 Intensity 3_1 Intensity 3_2 Reverse Potential contaminant id Protein group IDs Peptide ID Evidence IDs MS/MS IDs Best MS/MS Deamidation (NQ) site IDs Oxidation (M) site IDs MS/MS Count AAAAAAAAAAGAAGGR Acetyl (Protein N-term) 1239.632 0.63199703 1893 Q86U42-2;Q86U42 PABPN1 Polyadenylate-binding protein 2 yes no 1 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 58.242 58.452 2 0.0014342 24010 20181213_JW_Orientia_Karp_1_3 159.79 108.53 26407000 3870900 4815400 6031500 0 6615400 5073600 0 0 0 1893 0 0;1;2;3;4 0;1 0 2 AAAAAAALQAK Unmodified 955.54508 0.5450795 1660 Q59GY2;P36578;B4DMJ6;H3BU31;H3BM89 RPL4 60S ribosomal protein L4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 29.258 29.631 2 2.9842E-05 8200 20181213_JW_Orientia_Karp_1_1 164.72 112.94 84599000 20118000 28984000 18928000 5342400 0 1507300 7923100 1796100 1 1660 1 5;6;7;8;9;10;11 2;3;4;5;6;7 2 6 AAAAAAGAGPEMVR Acetyl (Protein N-term);Oxidation (M) 1299.6241 0.62413446 1638 Q499G7;Q1HBJ4;P28482-2;P28482 MAPK1 Mitogen-activated protein kinase;Mitogen-activated protein kinase 1 yes no 1 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.944 46.127 2 0.0016076 16267 20181213_JW_Orientia_Karp_1_2 119.16 85.234 41047000 13430000 15998000 11619000 0 0 0 0 0 2 1638 2 12;13;14 8;9;10;11;12 10 1263 5 AAAAEGVLATR Acetyl (Protein N-term) 1070.572 0.57202253 916 F1T0F0;Q6QNY1 BLOC1S2 Biogenesis of lysosome-related organelles complex 1 subunit 2 yes no 1 0 0 0 By MS/MS By MS/MS 1 1 58.723 58.975 2 0.0036033 22354 20181213_JW_Orientia_Karp_2_2 109.79 33.568 2606000 0 0 0 0 2606000 0 0 0 3 916 3 15;16 13;14 13 2 AAAAELSLLEK Acetyl (Protein N-term) 1156.634 0.63395409 761 D6RBD7;C9J1V9;O43324-2;O43324 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 73.078 73.147 2 1.5636E-05 29536 20181213_JW_Orientia_Karp_2_2 170.99 110.56 52484000 9512500 6200600 7704300 0 3690800 0 25376000 0 4 761 4 17;18;19;20;21;22;23;24 15;16;17;18;19;20 18 6 AAAALNGVDRR Acetyl (Protein N-term);Deamidation (NQ) 1155.5996 0.59963426 969 H0YCH8 AKIP1 yes yes 1 1 0 1 By MS/MS By matching By matching 1 1 1 31.02 31.254 3 0.028884 8858 20181213_JW_Orientia_Karp_1_1 50.353 10.807 15336000 12352000 2716900 0 0 267130 0 0 0 5 969 5 25;26;27 21 21 342 1 AAAASAAEAGIATTGTEDSDDALLK Unmodified 2319.1078 0.10777871 1707 P55036;H0Y3Y9 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.344 54.61 3 5.6178E-05 20265 20181213_JW_Orientia_Karp_2_3 77.543 45.79 79498000 26251000 19027000 16991000 4440400 6304300 6483400 0 0 6 1707 6 28;29;30;31;32;33 22;23;24;25;26;27 27 6 AAAAVSESWPELELAER Acetyl (Protein N-term) 1869.9109 0.91085723 94 A0A024R4G1;Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 75.508 75.537 2 0.0013375 35269 20181213_JW_Orientia_Karp_1_1 115.34 82.396 42225000 12107000 10272000 12000000 978900 0 1451100 4787500 628760 7 94 7 34;35;36;37;38;39;40 28;29;30 28 3 AAAAVVEFQR Acetyl (Protein N-term) 1102.5771 0.57710791 1489 O00231;O00231-2;J3QRY4;B4DTS5 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 1 0 0 0 By MS/MS By MS/MS 1 1 64.125 64.125 2 3.2187E-05 28282 20181213_JW_Orientia_Karp_1_1 158.87 71.566 5833600 5833600 0 0 0 0 0 0 0 8 1489 8 41;42 31;32 31 2 AAALEFLNR Unmodified 1003.5451 0.5450795 377 V9HW72;A8K690;P31948;P31948-2;F5GXD8;F5H783 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 52.508 52.758 2 0.00081465 18956 20181213_JW_Orientia_Karp_2_1 136.27 80.764 153470000 41569000 39354000 20702000 35998000 15846000 0 0 0 9 377 9 43;44;45;46;47;48 33;34;35;36;37;38 36 6 AAALVLQTIWGYK Unmodified 1432.8078 0.80783613 781 Q96FS1;Q68DU0;C9JZR2;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;O60716-7;O60716-5;O60716-3;O60716-6;O60716-4;O60716-2;O60716;Q7KZJ3;A0A024R4Z0;A0A024R4Y7;O60716-32;O60716-31;O60716-29;O60716-27;O60716-30;O60716-28;O60716-26;O60716-25 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 69.868 69.985 2 0.0015035 31316 20181213_JW_Orientia_Karp_1_3 131.83 79.036 18362000 7008000 4052000 2221400 0 1326200 717610 3036700 0 10 781 10 49;50;51;52;53;54 39;40;41 40 1 AAAPAPEEEMDECEQALAAEPK Unmodified 2356.0199 0.019891683 1634 Q53YD7;P26641;P26641-2;Q2F840 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS 1 53.182 53.38 2 0.030154 20791 20181213_JW_Orientia_Karp_1_3 91.657 73.912 0 0 0 0 0 0 0 0 0 11 1634 11 55 42 42 1 AAAPQAWAGPMEEPPQAQAPPR Unmodified 2270.0902 0.090235351 1815 Q16643;Q16643-3;Q16643-2;B7Z2Z0;D6R9Q9;B3KSQ7 DBN1 Drebrin yes no 0 0 0 0 By MS/MS 1 53.71 53.71 3 0.037318 21696 20181213_JW_Orientia_Karp_1_1 47.089 22.679 9565700 9565700 0 0 0 0 0 0 0 12 1815 12 56 43 43 1 AAAQLLQSQAQQSGAQQTK Unmodified 1956.0025 0.0024662011 850 H0Y9G8;H0Y961;Q96KC0;D6RGI3;D6RER5;Q9NVA2;Q9NVA2-2 SEPT11 Septin-11 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 36.832 37.132 2 5.044E-102 11867 20181213_JW_Orientia_Karp_1_1 337.22 265.12 40687000 12177000 15662000 10538000 0 0 0 2309400 0 13 850 13 57;58;59;60;61 44;45;46;47;48 44 5 AAATGAVAASAASGQAEGK Acetyl (Protein N-term) 1629.7958 0.79582747 983 H0YLW7;H0YMW8;H0YNF3;H0YMR6;H0YLE6;H0YL55;H7BXE3;Q9NWH9 SLTM SAFB-like transcription modulator yes no 1 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 47.771 48.171 2 0.0011636 17787 20181213_JW_Orientia_Karp_1_1 153.09 118.08 19038000 0 10501000 8013300 0 0 0 523500 0 14 983 14 62;63;64;65 49;50 49 2 AAATPESQEPQAK Unmodified 1326.6416 0.64155866 1682 P49006 MARCKSL1 MARCKS-related protein yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 23.454 23.805 2 0.0069755 5250 20181213_JW_Orientia_Karp_1_2 103.91 57.453 5842300 0 834290 0 1694600 1150300 583210 1579900 0 15 1682 15 66;67;68;69;70;71 51;52;53;54 52 4 AAAVAAAGAGEPQSPDELLPK Acetyl (Protein N-term) 2004.0164 0.016384931 1828 Q549C5;Q53GB0;Q9NS69 MST065;TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 2 72.348 72.397 2;3 1.3722E-16 33167 20181213_JW_Orientia_Karp_1_1 180.97 139.58 64368000 24879000 0 27563000 0 0 0 11926000 0 16 1828 16 72;73;74;75 55;56;57 55 3 AAAVLPVLDLAQR Unmodified 1335.7874 0.78743503 383 Q9UEH5;Q6IPW4;Q6IB76;A8K750;E7EPT4;P19404 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 67.526 67.792 2 0.0035758 29910 20181213_JW_Orientia_Karp_1_3 115.91 87.188 14534000 0 4791400 7989100 0 0 0 1753000 0 17 383 17 76;77;78;79 58;59;60;61 60 4 AADRLPNLSSPSAEGPPGPPSGPAPR Unmodified 2494.2564 0.25644906 535 B3KUF5;B4DJ44;B4DKQ5;O60784-3;O60784-4;O60784;O60784-2 TOM1 Target of Myb protein 1 yes no 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 48.497 48.647 3 0.0055096 17693 20181213_JW_Orientia_Karp_1_3 68.361 36.607 20754000 8450700 0 6493700 0 3701700 2107700 0 0 18 535 18 80;81;82;83 62 62 1 AAEAAPPTQEAQGETEPTEQAPDALEQAADTSR Unmodified 3379.5288 0.52877991 529 B3KTJ9;Q8N163-2;Q8N163;G3V119;H0YB24 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 52.19 52.524 3 4.3202E-06 20798 20181213_JW_Orientia_Karp_1_1 84.549 70.066 31138000 13069000 16749000 0 0 0 0 1320600 0 19 529 19 84;85;86 63;64 63 2 AAEDYGVIK Unmodified 964.48656 0.48656157 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9;Q59FA5 TAGLN Transgelin yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 37.223 37.545 2 0.014285 11545 20181213_JW_Orientia_Karp_1_3 87.639 38.103 95496000 38426000 21342000 17988000 2355100 2294600 6050100 7040800 0 20 1761 20 87;88;89;90;91;92;93 65 65 1 AAEEAFVNDIDESSPGTEWER Unmodified 2351.019 0.018963706 1577 P09496-5;P09496-2 CLTA Clathrin light chain A yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 60.508 60.898 2 2.9034E-60 23642 20181213_JW_Orientia_Karp_2_3 271.43 184.73 19809000 0 7947600 0 6080400 3764600 0 0 2016400 21 1577 21 94;95;96;97;98 66;67;68 67 3 AAEIAISNPLLDNSSIR Unmodified 1782.9476 0.94757708 1404 Karp_02212 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 1 1 1 2 1 1 1 64.698 64.899 2;3 9.7528E-32 28022 20181213_JW_Orientia_Karp_1_3 284.91 211.41 372470000 117110000 83942000 69636000 10189000 58045000 930110 21770000 10845000 22 1404 22 99;100;101;102;103;104;105;106;107;108 69;70;71;72;73;74 72 6 AAEIAISNPLLDNSSIR Deamidation (NQ) 1783.9316 0.93159267 1404 Karp_02212 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.438 67.639 2 2.9156E-16 29814 20181213_JW_Orientia_Karp_1_3 201.3 139.49 74870000 22448000 13431000 14423000 0 9347700 5260100 6415000 3545200 23 1404 22 109;110;111;112;113;114;115 75;76;77;78;79;80;81 78 917 7 AAELEMELNEHSLVIDTLK Oxidation (M) 2170.0827 0.082749937 440 B1AQP2;Q9UHV9 PFDN2 Prefoldin subunit 2 yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 59.661 59.986 3 0.039097 23036 20181213_JW_Orientia_Karp_2_1 60.542 33.393 36700000 0 8405500 0 9120000 11204000 7970600 0 0 24 440 23 116;117;118;119 82;83 82 2 AAFDDAIAELDTLSEESYK Unmodified 2086.9583 0.95826093 1728 V9HW98;P62258;G9K389;G9K388;P62258-2;B7ZA86;K7EM20 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 1 1 1 74.156 74.181 2;3 3.6218E-17 34399 20181213_JW_Orientia_Karp_1_2 196.37 148.66 432950000 183250000 91801000 119190000 8621600 0 8837800 20718000 525470 25 1728 24 120;121;122;123;124;125;126;127;128;129;130 84;85;86;87;88 85 5 AAFGGSGGR Unmodified 778.3722 0.37220051 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 18.105 18.485 2 0.0013008 2132 20181213_JW_Orientia_Karp_3_2 127.46 91.843 25477000 4636700 6337900 0 7039400 684190 3489200 1900900 1388900 + 26 804;1657 25 131;132;133;134;135;136;137 89;90;91;92;93 93 5 AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unmodified 2500.0599 0.059934093 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 28.357 28.558 3 3.2413E-15 6797 20181213_JW_Orientia_Karp_2_3 153.77 131.54 12221000 1717100 0 0 0 8478700 2025500 0 0 + 27 804;1657 26 138;139;140;141 94;95;96;97 97 4 AAFTECCQAADK Unmodified 1370.5595 0.55948529 620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;B7WNR0;B4DPR2;H0YA55;D6RHD5 ALB Serum albumin yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 30.292 30.655 2 0.004236 8699 20181213_JW_Orientia_Karp_1_1 111.5 57.9 70047000 58394000 0 0 8878700 0 308000 2466200 0 + 28 620 27 142;143;144;145 98 98 1 AAGFDEIEQDLTQR Unmodified 1591.7478 0.74781464 1534 O95786-2;O95786;B3KWW1;B3KN51;A2A376;B4DWT9 DDX58 Probable ATP-dependent RNA helicase DDX58 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 60.436 60.619 2 0.00031696 25446 20181213_JW_Orientia_Karp_1_3 150.51 90.256 40637000 16815000 15179000 8643700 0 0 0 0 0 29 1534 28 146;147;148 99 99 1 AAGSAQGNNQACNSTSEVKDLLEQK 3 Deamidation (NQ) 2622.1715 0.17151796 1784 Q0VF96;Q6P5Q2 CGNL1 Cingulin-like protein 1 yes no 0 3 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 77.284 77.266 2 0.037434 31748 20181213_JW_Orientia_Karp_2_3 61.649 36.04 191430000 44370000 0 34560000 19289000 25327000 24085000 43800000 0 30 1784 29 149;150;151;152;153;154 100 100 1981;1982;1983 1 AAGSGELGVTMK Oxidation (M) 1135.5543 0.55432356 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 30.066 30.391 2 0.0030413 8423 20181213_JW_Orientia_Karp_1_1 113.67 77.337 31811000 9971600 8950800 12652000 0 0 0 236340 0 31 1520 30 155;156;157;158 101;102 101 1126 2 AAGTLYTYPENWR Acetyl (Protein N-term) 1582.7416 0.74160705 1634 Q53YD7;P26641;B4DUK7;Q2F838;B4DSR4 EEF1G Elongation factor 1-gamma yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 70.451 70.575 2 0.00024519 31996 20181213_JW_Orientia_Karp_1_2 159.83 110.77 47759000 22872000 8758800 10089000 0 0 0 6039400 0 32 1634 31 159;160;161;162 103;104;105 104 3 AAGVEAAAEVAATEIK Acetyl (Protein N-term) 1541.7937 0.7937022 1701 P52272-2;P52272;M0R019;B4DEG4;M0R0N3;M0R2T0;M0R0Y6;M0QYQ7 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 73.958 73.99 2 4.3044E-28 33976 20181213_JW_Orientia_Karp_1_3 236.08 152.08 333680000 112550000 83831000 107280000 1305800 10152000 4780100 13625000 162690 33 1701 32 163;164;165;166;167;168;169;170 106;107;108;109;110;111;112 108 7 AAGVNVEPFWPGLFAK Unmodified 1701.8879 0.88787736 1860;125 Q6FG99;Q6ICQ4;A0A024R608;P05386;Q7Z612 RPLP1 60S acidic ribosomal protein P1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 73.362 73.394 2 2.7675E-13 29964 20181213_JW_Orientia_Karp_2_3 196.38 150.47 2449800000 688230000 158510000 431820000 142730000 199010000 141890000 386020000 301590000 34 1860;125 33 171;172;173;174;175;176;177;178 113;114;115;116;117;118;119;120;121 119 9 AAIADVISR Unmodified 914.51853 0.5185304 1087 Karp_00223 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.522 44.789 2 0.0021337 15598 20181213_JW_Orientia_Karp_1_2 117.89 58.973 411700000 156480000 160990000 53620000 0 19840000 8428300 12337000 0 35 1087 34 179;180;181;182;183;184 122;123;124;125;126;127 123 6 AAIDWFDGK Unmodified 1021.4869 0.48689592 359;1884 Q59H57;B4DR70;A8K4H1;Q8TBR3;Q6IBQ5;H3BPE7;Q13344;P35637-2;P35637;B4E312;A0A075B7D9;Q92804-2;Q92804;Q70T18 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.555 57.785 2 0.0098883 21729 20181213_JW_Orientia_Karp_2_2 94.309 19.39 83631000 25203000 0 16924000 4360000 9261000 27883000 0 0 36 359;1884 35 185;186;187;188;189;190 128;129;130;131;132 131 5 AAINAPIQSTASDIAK Unmodified 1569.8362 0.83623572 1329 Karp_01364 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.848 48.194 2 2.9896E-09 17620 20181213_JW_Orientia_Karp_1_2 195.71 149.32 72678000 11203000 21794000 19049000 5304200 4410400 4380600 1172500 5364400 37 1329 36 191;192;193;194;195;196;197;198 133;134 133 2 AAIVDYK Unmodified 778.4225 0.42250475 1277 Karp_01109 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 33.606 33.906 2 0.028142 9780 20181213_JW_Orientia_Karp_1_2 91.906 29.192 26809000 13320000 10118000 0 3370200 0 0 0 0 38 1277 37 199;200;201;202 135;136 135 2 AALAHSEEVTASQVAATK Unmodified 1782.9112 0.91119158 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;H0YDN1 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 34.527 34.877 3 1.3811E-12 10712 20181213_JW_Orientia_Karp_1_1 189.33 131.06 75483000 19050000 18190000 31726000 1195500 0 0 5321900 0 39 1803 38 203;204;205;206;207 137;138;139;140 137 4 AALAVGSPGPGGGSFAR Unmodified 1470.7579 0.75792582 1967 Q9BYB0-3;Q9BYB0 SHANK3 SH3 and multiple ankyrin repeat domains protein 3 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 46.52 46.907 2 0.026406 17113 20181213_JW_Orientia_Karp_1_1 78.653 26.374 20492000 17588000 0 0 0 0 0 918050 1986000 40 1967 39 208;209;210 141 141 1 AALEAVGGTVVLE Unmodified 1227.6711 0.67106787 1702 P52815;Q96Q74 MRPL12;MRPL7/L12 39S ribosomal protein L12, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.007 68.208 2 0.00048415 30630 20181213_JW_Orientia_Karp_1_1 160.59 104.02 75237000 26180000 8238800 7028500 0 13100000 11492000 4248200 4948700 41 1702 40 211;212;213;214;215;216;217 142;143;144;145;146;147;148 142 7 AALGPSSQNVTEYVVR Acetyl (Protein N-term) 1731.8792 0.87916317 550 M0R0Z3;B4DDB5;Q6IBK5;P35269 GTF2F1 General transcription factor IIF subunit 1 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.474 67.676 2 0.00021929 29789 20181213_JW_Orientia_Karp_1_3 143.42 101.88 69607000 20881000 11293000 12235000 0 8841600 4954400 5758100 5644300 42 550 41 218;219;220;221;222;223;224 149;150;151;152;153;154 151 6 AALLELWELR Unmodified 1212.6867 0.68665836 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 1 72.743 72.743 2 0.011847 33463 20181213_JW_Orientia_Karp_1_1 114.84 72.862 0 0 0 0 0 0 0 0 0 43 316 42 225 155 155 1 AALLMPRRNK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1227.6758 0.6757761 849 D6RD36;P57771 RGS8 Regulator of G-protein signaling 8 yes no 1 1 1 2 By matching By matching By matching By MS/MS 1 1 1 1 23.826 24.202 3 0.028145 5213 20181213_JW_Orientia_Karp_3_1 52.482 6.0251 658250000 0 0 0 113100000 121000000 266710000 157450000 0 44 849 43 226;227;228;229 156 156 307 1 AALPAQELEEYNK Unmodified 1474.7304 0.73037367 1020 I3UJJ7;P12821-2;P12821;F6X3S4;B4DXK6;D3DU13;L7MUH0;I6L9B3;P12821-4;P12821-3;J3KSQ5 ACE Angiotensin-converting enzyme;Angiotensin-converting enzyme, soluble form yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 48.147 48.497 2 0.036231 18175 20181213_JW_Orientia_Karp_1_1 75.088 43.666 67006000 19435000 22337000 15566000 9164700 0 0 503380 0 45 1020 44 230;231;232;233;234 157;158 157 2 AALQELLSK Unmodified 971.56515 0.56514624 1737 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.196 50.446 2 6.6286E-06 19034 20181213_JW_Orientia_Karp_1_2 199.89 104.08 345020000 74088000 99751000 48859000 64514000 24551000 33255000 0 0 46 1737 45 235;236;237;238;239;240 159;160;161;162;163;164 160 6 AALRPLVKPK Unmodified 1091.7179 0.71789891 70 D3YTB1;A0A024R2G7;F8W727;P62910;D3YTI8 RPL32 60S ribosomal protein L32 yes no 0 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 24.302 24.704 3 0.032979 5586 20181213_JW_Orientia_Karp_1_3 96.034 85.747 38021000 0 16445000 5361400 3495700 4654300 0 4561100 3502900 47 70 46 241;242;243;244;245;246;247 165;166 166 2 AALTIDEK Unmodified 859.4651 0.46509784 803 CON__P34955 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 34.551 34.882 2 0.020972 10191 20181213_JW_Orientia_Karp_1_3 87.696 21.267 29394000 1076800 0 9711300 5243600 7402700 0 5959700 0 + 48 803 47 248;249;250;251;252 167;168 167 2 AALVDLEPGTMDSVR Oxidation (M) 1588.7767 0.77667193 1964 Q9BUF5;B4DP54;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 TUBB6 Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 53.367 53.667 2 1.5608E-13 21594 20181213_JW_Orientia_Karp_1_1 206.1 131.56 122170000 40521000 38658000 40702000 0 0 0 2292600 0 49 1964 48 253;254;255;256;257 169;170;171;172 169 1519 4 AALVDLEPGTMDSVR Unmodified 1572.7818 0.78175731 1964 Q9BUF5;B4DP54;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 TUBB6 Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 59.069 59.456 2 0.0034023 25044 20181213_JW_Orientia_Karp_1_2 128.36 88.578 68645000 0 29250000 36506000 2202400 0 0 687260 0 50 1964 48 258;259;260;261 173;174 173 2 AALVLEDGSVLR Acetyl (Protein N-term) 1283.7085 0.70851601 936 Q53SZ4;G1UI39;F8VPD4;P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 1 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 75.905 75.888 2 0.00077016 35269 20181213_JW_Orientia_Karp_1_3 138.66 39.006 12159000 5666200 0 3864300 0 0 0 2628800 0 51 936 49 262;263;264;265 175;176;177 176 3 AANSLEAFIFETQDK Unmodified 1682.8152 0.81516593 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;B7Z602 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 67.788 67.954 3 0.0015009 30500 20181213_JW_Orientia_Karp_1_1 141.82 81.415 6569400 0 847280 4594700 0 0 1127400 0 0 52 545 50 266;267;268;269;270 178;179;180;181 178 4 AAPFGASQDGAGWVQLVKR 2 Deamidation (NQ) 1958.985 0.98502522 1988 Q9NW32 hCG_1770745 yes yes 0 2 0 1 By MS/MS 1 67.153 67.401 3 0.035169 26932 20181213_JW_Orientia_Karp_2_1 66.436 11.625 0 0 0 0 0 0 0 0 0 53 1988 51 271 182 182 2095;2096 1 AAPMTPAARPEDYEAALNAALADVPELAR Acetyl (Protein N-term);Oxidation (M) 3051.4971 0.49714961 1768 Q04446 GBE1 1,4-alpha-glucan-branching enzyme yes yes 1 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 75.432 75.456 3 0.0010786 35238 20181213_JW_Orientia_Karp_1_1 67.388 48.357 53669000 17191000 8675300 17670000 0 0 0 10133000 0 54 1768 52 272;273;274;275 183;184;185;186 183 1383 4 AAPVDLELK Acetyl (Protein N-term) 996.54916 0.54916182 868 E5RGS4;O60925;D6RGG5 PFDN1 Prefoldin subunit 1 yes no 1 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 67.462 67.562 2 0.0083659 26955 20181213_JW_Orientia_Karp_2_3 95.815 44.469 59009000 16752000 0 15081000 0 16895000 10281000 0 0 55 868 53 276;277;278;279 187;188 188 2 AAQDSGYLNDVNEQLLDIK Deamidation (NQ) 2106.0117 0.011693483 1320 Karp_01282 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 66.765 66.982 2 1.0628E-40 29344 20181213_JW_Orientia_Karp_1_1 244.18 157.45 83974000 44630000 18902000 0 0 0 0 20442000 0 56 1320 54 280;281;282;283;284;285 189;190;191;192;193 189 757;758;1839 4 AAQDSGYLNDVNEQLLDIK Unmodified 2105.0277 0.027677899 1320 Karp_01282 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 2 2 2 1 65.787 65.999 2;3 1.2021E-68 23043 20181213_JW_Orientia_Karp_3_1 327.1 237.91 143330000 13983000 35211000 39234000 1334900 15025000 8563400 20201000 9774700 57 1320 54 286;287;288;289;290;291;292;293;294;295;296;297;298 194;195;196;197;198 198 4 AAQDSGYLNDVNEQLLDIK 2 Deamidation (NQ) 2106.9957 0.99570907 1320 Karp_01282 yes yes 0 2 0 0 By MS/MS 1 67.649 67.8 2 0.0040223 26757 20181213_JW_Orientia_Karp_2_2 99.344 44.304 0 0 0 0 0 0 0 0 0 58 1320 54 299 199 199 757;758;1839 1 AAQGQPQVQFK Acetyl (Protein N-term);Deamidation (NQ) 1243.6197 0.619701 1783 Q96QB7;Q0EFC9 TC4 yes no 1 1 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 51.196 51.548 2 0.00083351 19562 20181213_JW_Orientia_Karp_1_3 149.94 6.0465 101990000 0 0 75674000 10684000 4980700 9595000 0 1053700 59 1783 55 300;301;302;303;304 200;201 200 1980 2 AAQLAIR Unmodified 741.44972 0.44972255 70 D3YTB1;A0A024R2G7;F8W727;P62910 RPL32 60S ribosomal protein L32 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 32.201 32.384 2 0.018801 8985 20181213_JW_Orientia_Karp_1_3 104.11 6.5147 22083000 5885900 13633000 2564600 0 0 0 0 0 60 70 56 305;306;307 202;203 203 2 AASAAAASAAAASAASGSPGPGEGSAGGEK Acetyl (Protein N-term) 2428.1102 0.11023833 474 B2R8R5;Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 1 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 55.697 56.019 3 8.8503E-06 23032 20181213_JW_Orientia_Karp_1_1 97.085 73.789 168580000 60027000 30848000 39431000 8797200 9452400 6901000 13123000 0 61 474 57 308;309;310;311;312;313;314 204;205;206 204 2 AASADSTTEGTPADGFTVLSTK Unmodified 2126.0015 0.0015227276 1518 O75367-2;O75367-3;O75367 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.4 55.667 2 1.1817E-22 22157 20181213_JW_Orientia_Karp_1_3 237.05 167.23 163600000 48756000 53855000 50106000 2895700 4048200 3935200 0 0 62 1518 58 315;316;317;318;319;320 207;208;209;210;211;212 209 6 AASGFNAMEDAQTLR Oxidation (M) 1596.7202 0.72021968 554 Q6P452;B4DDZ4;V9HW59;Q6LES2;P09525;B4E1S2 ANXA4;HEL-S-274 Annexin;Annexin A4 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 40.679 40.956 2 0.0076656 12721 20181213_JW_Orientia_Karp_2_1 98.407 58.534 8621400 2929000 0 0 2421600 1645000 0 0 1625800 63 554 59 321;322;323;324;325 213;214;215 214 346 3 AASGFNAMEDAQTLR Unmodified 1580.7253 0.72530506 554 Q6P452;B4DDZ4;V9HW59;Q6LES2;P09525;B4E1S2 ANXA4;HEL-S-274 Annexin;Annexin A4 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 49.087 49.39 2 0.041278 18160 20181213_JW_Orientia_Karp_1_3 70.373 19.281 14261000 0 0 5283800 0 1864100 4109600 0 3003000 64 554 59 326;327;328;329 216 216 1 AASGGAALASPGPGTGSGAPAGSGGK Unmodified 2009.9766 0.97664538 1484 M0R148;Q8IUR2;Q5U651 RASIP1 Ras-interacting protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 36.258 36.532 2 8.3942E-05 11068 20181213_JW_Orientia_Karp_1_2 139.67 90.042 23799000 0 6445100 17354000 0 0 0 0 0 65 1484 60 330;331 217;218 217 2 AATAPLLEAVDNLSAFASNPEFSSIPAQISPEGR Unmodified 3469.7365 0.73652826 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 1 77.016 76.966 4 0.041362 29116 20181213_JW_Orientia_Karp_3_1 34.267 7.6075 5411300 0 0 0 0 0 0 5411300 0 66 2016 61 332 219 219 1 AATASAGAGGIDGKPR Acetyl (Protein N-term) 1440.7321 0.732105 1015 I3L1P8;Q6IBH0;Q02978-2;Q02978 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 1 0 0 1 By MS/MS By MS/MS By matching 1 1 1 35.254 35.791 2 0.00026898 10704 20181213_JW_Orientia_Karp_1_2 146.5 93.924 14104000 0 9670100 0 0 0 0 3130400 1304000 67 1015 62 333;334;335 220;221 220 1 AATSPALFNR Unmodified 1046.5509 0.55089316 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 40.833 41.245 2 0.010115 13401 20181213_JW_Orientia_Karp_1_3 93.143 21.848 26505000 0 14645000 7516100 632100 0 0 3711600 0 68 1796 63 336;337;338;339 222;223 223 2 AAVATFLQSVQVPEFTPK Unmodified 1932.0357 0.03566381 42 A0A024R1A3;P22314-2;P22314;B4DDE4;B4DL67;Q5JRR6;B3KUJ2 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 72.346 72.404 2;3 1.6262E-06 32916 20181213_JW_Orientia_Karp_1_3 153.7 105.13 173450000 63156000 37078000 39730000 0 0 0 33482000 0 69 42 64 340;341;342;343;344;345 224;225;226;227 226 4 AAVDIIGGR Unmodified 870.49232 0.49231565 1257 Karp_00937 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 42.7 43.042 2 0.010469 14540 20181213_JW_Orientia_Karp_1_2 93.162 33.813 98350000 0 47124000 27132000 3780900 6635000 4449400 9228800 0 70 1257 65 346;347;348;349;350;351;352 228;229 229 2 AAVEEGIVLGGGCALLR Unmodified 1683.8978 0.89779012 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.191 63.461 2 2.3096E-31 23892 20181213_JW_Orientia_Karp_3_2 226.73 177.29 106760000 35883000 22130000 18504000 2227600 12578000 6507400 173060 8759100 71 81 66 353;354;355;356;357;358;359;360 230;231;232;233;234;235;236 236 7 AAVEEGIVPGGGVALFYASR Unmodified 1962.0211 0.021076378 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 69.593 69.72 2;3 5.0229E-05 28084 20181213_JW_Orientia_Karp_2_3 172.43 146.02 6874500000 2770300000 0 0 0 875440000 631860000 1916500000 680450000 72 1296 67 361;362;363;364;365;366 237;238;239;240;241;242;243;244 241 8 AAVENLPTFLVELSR Unmodified 1657.9039 0.90392136 490 B2RBR9;Q14974;J3QR48 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 73.591 73.615 2 0.001831 34058 20181213_JW_Orientia_Karp_1_1 125.53 36.261 41795000 18446000 11491000 10868000 989600 0 0 0 0 73 490 68 367;368;369;370 245;246;247 245 3 AAVESLGFILFR Unmodified 1321.7394 0.73942221 454 B2R6D0;Q99460-2;Q99460;H7C378;Q05BX4;Q05CW6 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS 1 73.411 73.409 2 3.4425E-11 33606 20181213_JW_Orientia_Karp_1_3 200.6 132.59 3460300 0 0 3460300 0 0 0 0 0 74 454 69 371 248 248 1 AAVLQQVLER Acetyl (Protein N-term) 1167.6612 0.66117189 1589 P12270;Q58F23;Q504U6;Q15624 TPR Nucleoprotein TPR yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 76.114 76.097 2 1.4162E-06 35411 20181213_JW_Orientia_Karp_1_3 182.39 114.4 54913000 19082000 10418000 5995400 0 5394800 5545500 8477000 0 75 1589 70 372;373;374;375;376;377 249;250;251;252;253;254;255 252 7 AAVNELQNLVEEAVDK Unmodified 1740.8894 0.8893935 1316 Karp_01272 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 2 1 70.638 70.777 2;3 4.6213E-60 28722 20181213_JW_Orientia_Karp_2_1 318.07 240.41 551710000 72778000 230680000 79941000 0 29184000 22734000 116390000 0 76 1316 71 378;379;380;381;382;383;384;385;386;387;388 256;257;258;259;260;261;262;263;264 260 8 AAVPQNNLQEQLER Acetyl (Protein N-term);3 Deamidation (NQ) 1653.7846 0.78459408 484 H0YLV8;Q3B7X0;H0YNU5;B2RAN0;P54132 BLM Bloom syndrome protein yes no 1 3 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 86.619 86.509 2 0.040429 34217 20181213_JW_Orientia_Karp_2_2 53.327 20.998 22532000 5234700 3111300 6167700 0 4765700 3252400 0 0 77 484 72 389;390;391;392;393 265 265 1471;1472 1 AAVPSGASTGIYEALELR Unmodified 1803.9367 0.93667805 93 A0A024R4F1;P06733;K7EM90;F5H1C3;E5RI09;E5RG95;K7EPM1;K7EKN2;B4DUJ6;E5RGZ4;F5H0C8;Q6FHV6;A8K3B0;P13929-3;P09104-2;P13929-2;P13929;P09104 ENO1;ENO2;ENO3 Alpha-enolase;Enolase;Beta-enolase;Gamma-enolase yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 2 2 1 63.628 63.828 2;3 0.0003826 28037 20181213_JW_Orientia_Karp_1_1 127.36 86.859 166100000 25105000 40666000 25024000 7599600 42546000 25010000 147750 0 78 93 73 394;395;396;397;398;399;400;401;402;403;404 266;267;268;269 266 4 AAYDIEVNTR Unmodified 1150.5619 0.56185177 289 A2VCL5;Q6IB58;Q5ST80;Q53HQ0;O75955-2;O75955;A2AB09;A2ABJ5;A2AB12;A2AB10 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS By matching 1 1 42.06 42.235 2 0.0092708 14584 20181213_JW_Orientia_Karp_1_1 94.692 53.263 19012000 11779000 7232500 0 0 0 0 0 0 79 289 74 405;406 270 270 1 AAYEAELGDAR Unmodified 1164.5411 0.54111633 1543;1544 P02545;P02545-3;P02545-6;Q5I6Y5;Q8N519;W5X314;P02545-2;W8QEH3;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 37.912 38.262 2 0.0037874 11964 20181213_JW_Orientia_Karp_1_2 110.39 49.627 86605000 20618000 28383000 32423000 3204300 0 0 1976600 0 80 1543;1544 75 407;408;409;410;411 271;272;273 271 3 AAYLQETGKPLDETLK Unmodified 1775.9305 0.93053004 1548 Q5TZZ9;P04083;B5BU38;Q5T3N1;Q5T3N0 ANXA1 Annexin;Annexin A1 yes no 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 1 44.699 45.065 2;3 1.9465E-18 14193 20181213_JW_Orientia_Karp_3_2 234.04 160.08 1079600000 251670000 343040000 246590000 21668000 0 105020000 80336000 31306000 81 1548 76 412;413;414;415;416;417;418;419;420;421 274;275;276;277 277 4 ACGLVASNLNLK Acetyl (Protein N-term) 1300.6809 0.68092105 1576 P09382;F8WEI7 LGALS1 Galectin-1 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 66.843 67.07 2 0.0020214 29946 20181213_JW_Orientia_Karp_1_1 119.22 74.063 10617000 6334800 0 0 0 0 3192000 74336 1015600 82 1576 77 422;423;424;425;426;427 278;279;280 278 3 ACLISLGYDIGNDPQGEAEFAR Unmodified 2395.1114 0.1114243 133 A0A024R694;P12814 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 1 2 1 2 1 2 68.773 68.946 2;3 7.499E-11 30603 20181213_JW_Orientia_Karp_1_3 164.69 137.89 80739000 30251000 4932100 26674000 901560 6584800 0 1889000 9505600 83 133 78 428;429;430;431;432;433;434;435;436;437;438 281;282;283;284;285 283 5 ACLISLGYDVENDR Unmodified 1623.7563 0.75627084 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 60.383 60.633 2 0.00020368 26046 20181213_JW_Orientia_Karp_1_1 156.36 94.713 123220000 44125000 30550000 31355000 4483100 8827000 3883300 0 0 84 1509 79 439;440;441;442;443;444 286;287;288 286 3 ACQSIYPLHDVFVR Unmodified 1703.8454 0.84536062 363 H0Y9Y4;D6RG13;Q6NXR8;A8K4W0;P61247;D6R9B6;D6RAT0;D6RB09 RPS3A 40S ribosomal protein S3a yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 53.856 54.123 3 0.027726 21517 20181213_JW_Orientia_Karp_1_2 85.837 48.282 93191000 34386000 12948000 26646000 6386100 4816500 8008500 0 0 85 363 80 445;446;447;448;449;450 289;290 290 2 ADALYQKHAGHTLLQIPMGGK Oxidation (M);2 Deamidation (NQ) 2266.1416 0.14160222 549 B3KY51;Q8NC60 NOA1 Nitric oxide-associated protein 1 yes no 0 2 1 1 By MS/MS 1 62.421 62.769 3 0.0081559 24676 20181213_JW_Orientia_Karp_2_1 79.393 12.239 7901500 0 0 0 7901500 0 0 0 0 86 549 81 451 291 291 1511;1512 345 1 ADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAK Unmodified 3894.6915 0.69150492 138 A0A024R6K8;P23381;P23381-2;B4DTK8;G3V277;G3V3H8;G3V3Y5;G3V423;G3V3P2;G3V227;G3V5U1;G3V456;G3V2Y7;G3V4C7;G3V4N8;G3V5W1;G3V3S7;G3V3X0 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 60.208 60.391 3 1.7707E-09 25580 20181213_JW_Orientia_Karp_1_2 97.118 85.53 46236000 17778000 16208000 12250000 0 0 0 0 0 87 138 82 452;453;454 292;293;294;295 293 4 ADDADEFGYSR Unmodified 1244.4946 0.49456007 451 B2R5U1;B4E299;B3KU67;Q59FF0;Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 0 0 0 0 By MS/MS By matching 1 1 39.879 40.153 2 0.0027066 12997 20181213_JW_Orientia_Karp_1_2 114.89 88.005 7192200 0 3506000 3686200 0 0 0 0 0 88 451 83 455;456 296 296 1 ADDGRPFPQVIK Unmodified 1341.7041 0.70409934 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 42.977 43.336 3 0.0062343 14691 20181213_JW_Orientia_Karp_1_2 105.13 67.954 175830000 50593000 63075000 36103000 11692000 0 0 13905000 460240 89 1546 84 457;458;459;460;461;462 297;298;299;300 298 4 ADDILASPPR Unmodified 1053.5455 0.54547343 835 D3DSM4;D3DSM5;P39060-2;P39060-1;P39060;H7BXV5;H7C457 COL18A1 Collagen alpha-1(XVIII) chain;Endostatin yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 43.367 43.701 2 0.009271 14210 20181213_JW_Orientia_Karp_3_1 94.692 27.198 20878000 0 0 13965000 0 2713700 0 4199500 0 90 835 85 463;464;465 301 301 1 ADDKVAILTDDEEEQKR Acetyl (Protein N-term) 2015.9647 0.96474329 760 C9JAZ7;C9J134;C9JJH2;Q6ZSS7 MFSD6 Major facilitator superfamily domain-containing protein 6 yes no 1 0 0 2 By MS/MS 1 47.923 47.923 2 0.0019947 17780 20181213_JW_Orientia_Karp_1_1 109.72 13.608 0 0 0 0 0 0 0 0 0 91 760 86 466 302 302 1 ADDLDFETGDAGASATFPMQCSALR Acetyl (Protein N-term) 2687.1479 0.14794574 1018 I3L397;I3L504;P63241;Q6IS14 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 1 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 75.613 75.665 3 0.0080483 28402 20181213_JW_Orientia_Karp_3_1 61.345 29.427 18945000 6104200 7321900 0 0 0 0 4176100 1342900 92 1018 87 467;468;469;470 303 303 1 ADDVDQQQTTNTVEEPLDLIR Acetyl (Protein N-term) 2441.1558 0.15579154 1732 P62310 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 1 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 74.976 74.976 3 0.00073706 28013 20181213_JW_Orientia_Karp_3_1 104.89 69.146 36533000 10560000 6949700 7373900 0 3747300 3714700 4188100 0 93 1732 88 471;472;473;474;475;476 304;305;306 306 3 ADEELEALR Acetyl (Protein N-term) 1086.5193 0.51931826 1492 O14737;O14737-2;K7ESJ4;Q3HM38;X6R2P6 PDCD5 Programmed cell death protein 5 yes no 1 0 0 0 By MS/MS 1 61.536 61.787 2 0.0073368 23831 20181213_JW_Orientia_Karp_2_2 98.033 11.239 2285200 0 0 0 0 2285200 0 0 0 94 1492 89 477 307 307 1 ADEGIVALAVDNNK Deamidation (NQ) 1428.7096 0.70963822 1346 Karp_01522 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.839 57.197 2 1.828E-05 23213 20181213_JW_Orientia_Karp_1_3 176.32 110.82 101890000 21065000 21171000 23839000 10719000 8250800 8284300 2680300 5884700 95 1346 90 478;479;480;481;482;483;484;485 308;309;310;311;312;313;314 310 787 7 ADEWLMK Oxidation (M) 907.41095 0.41095378 47;944 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 38.214 38.594 2 0.0054731 12149 20181213_JW_Orientia_Karp_1_2 157.99 19.164 52348000 0 19174000 19784000 1560400 1440600 0 10389000 0 96 47;944 91 486;487;488;489;490;491 315;316;317;318 315 30 4 ADEWLMK Unmodified 891.41604 0.41603916 47;944 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By MS/MS 1 46.906 47.104 2 0.0089425 16703 20181213_JW_Orientia_Karp_1_3 143.02 4.1939 0 0 0 0 0 0 0 0 0 97 47;944 91 492 319 319 1 ADFCIIHYAGK Unmodified 1293.6176 0.61759251 47;944 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 47.525 47.725 2 0.0012276 17631 20181213_JW_Orientia_Karp_1_1 126.07 81.864 67592000 21079000 24902000 19087000 0 0 2524700 0 0 98 47;944 92 493;494;495;496;497 320;321;322 320 3 ADFDTYDDR Acetyl (Protein N-term) 1158.4465 0.44654725 603 Q75MU1;B4DMV6;Q75MU2;Q15056-2;Q15056 WBSCR1;EIF4H Eukaryotic translation initiation factor 4H yes no 1 0 0 0 By MS/MS By matching 1 1 56.854 57.285 2 0.0035786 21686 20181213_JW_Orientia_Karp_2_3 109.44 75.642 3686700 0 0 0 0 0 2632600 0 1054100 99 603 93 498;499 323 323 1 ADFQELGAK Unmodified 977.48181 0.48181054 689 B4E3H8;Q9H8L6;V9GY43;V9GYS9 MMRN2 Multimerin-2 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 38.93 39.193 2 0.012561 13078 20181213_JW_Orientia_Karp_1_1 89.029 36.092 8559700 5079100 2070000 0 934800 475790 0 0 0 100 689 94 500;501;502;503 324;325 325 2 ADGELNVDSLITR Acetyl (Protein N-term) 1443.7205 0.72053726 1724 V9HW04;P62140;C9J9S3;C9JP48 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 1 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 73.603 73.627 2 0.010599 34065 20181213_JW_Orientia_Karp_1_1 133.32 54.666 28324000 16232000 4570500 6555600 966070 0 0 0 0 101 1724 95 504;505;506;507 326 326 0 ADHQPLTEASYVNLPTIALCNTDSPLR Unmodified 2995.4709 0.47093486 71;150 C9J9K3;A0A024R2P0;P08865;A6NE09;A0A024R7P5 RPSA;RPSAP58;LOC388524 40S ribosomal protein SA no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.485 68.693 3 4.6785E-09 30775 20181213_JW_Orientia_Karp_1_2 133.58 101.31 218580000 49461000 35852000 19908000 11089000 25004000 17705000 31112000 28444000 102 71;150 96 508;509;510;511;512;513;514;515 327;328;329;330;331;332;333;334;335 330 9 ADHSFSDGVPSDSVEAAK Acetyl (Protein N-term) 1859.8174 0.81735077 239 E9PNW0;E9PJJ2;E9PS34;E9PNJ7;C9J6D1;A0A024RCC9;B7ZAK9;B7ZB83;B4DS05;Q99733;Q99733-2;E9PKI2;E9PP22;E9PKT8;C9JZI7;B7ZAC7;C9J1B1 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.104 48.449 2 5.1818E-09 18000 20181213_JW_Orientia_Karp_1_1 208.27 151.12 53369000 8864000 14481000 15247000 5243500 2224100 3214300 317780 3776100 103 239 97 516;517;518;519;520;521;522;523 336;337;338;339;340;341;342;343 336 8 ADIDISGPNVDVDVPDVNIEGPDAK Unmodified 2563.229 0.22895648 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 2 1 71.09 71.185 2;3 4.8321E-06 32113 20181213_JW_Orientia_Karp_1_3 120.82 94.093 201890000 39983000 66152000 47499000 2498900 13509000 11166000 21087000 0 104 1782 98 524;525;526;527;528;529;530;531;532;533;534 344;345;346 345 3 ADIDVSGPSVDTDAPDLDIEGPEGK Unmodified 2511.15 0.15003746 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 64.712 64.944 2;3 4.0906E-08 22616 20181213_JW_Orientia_Karp_3_1 176.17 125.7 114600000 50081000 14011000 20199000 1752000 9776400 7470900 9628500 1677800 105 1782 99 535;536;537;538;539;540;541;542 347;348 348 2 ADIEMPFDPSK Unmodified 1248.5696 0.56963927 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 59.288 59.537 2 0.012514 25015 20181213_JW_Orientia_Karp_1_2 91.701 18.822 72573000 25364000 17818000 27045000 2346800 0 0 0 0 106 1520 100 543;544;545;546 349 349 1 ADKPDMGEIASFDK Acetyl (Protein N-term) 1564.7079 0.70792366 1744 P63313 TMSB10 Thymosin beta-10 yes yes 1 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 55.686 56.044 2 3.527E-07 19567 20181213_JW_Orientia_Karp_3_2 180.61 117.19 212240000 50002000 30225000 44754000 23551000 25422000 23271000 11062000 3955100 107 1744 101 547;548;549;550;551;552;553;554 350;351;352;353;354;355;356;357 357 8 ADKPDMGEIASFDK Acetyl (Protein N-term);Oxidation (M) 1580.7028 0.70283829 1744 P63313 TMSB10 Thymosin beta-10 yes yes 1 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.698 47.018 2 2.1768E-07 15837 20181213_JW_Orientia_Karp_2_1 184.96 141.55 320660000 60322000 32273000 51622000 38776000 23564000 55323000 15054000 43721000 108 1744 101 555;556;557;558;559;560;561;562 358;359;360;361;362 358 1368 5 ADLDVSGPK Unmodified 900.45526 0.45526144 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 33.895 34.191 2 0.0013863 10310 20181213_JW_Orientia_Karp_1_1 126.24 0 615420000 276110000 107120000 200830000 0 21016000 0 4392400 5955500 109 1782 102 563;564;565;566;567;568;569;570;571 363;364;365;366;367;368 363 6 ADLEMQIESLTEELAYLK Unmodified 2095.0395 0.039488138 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 2 2 2 1 77.138 77.127 2;3 6.2198E-142 31725 20181213_JW_Orientia_Karp_2_1 344.71 247.54 160710000 42747000 1611900 23047000 21403000 25893000 18294000 27211000 504090 + 110 798 103 572;573;574;575;576;577;578;579;580;581;582;583;584;585;586;587 369;370;371;372;373;374;375;376;377 373 9 ADLEMQIESLTEELAYLK Oxidation (M) 2111.0344 0.03440276 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 2 2 1 77.22 77.213 2;3 2.7398E-101 31755 20181213_JW_Orientia_Karp_2_3 310.9 243.65 337440000 76235000 11862000 36042000 53022000 47356000 37712000 74862000 352980 + 111 798 103 588;589;590;591;592;593;594;595;596;597;598;599;600 378;379;380;381;382;383;384;385;386;387;388 386 462 11 ADLEMQIESLTEELAYLKK Oxidation (M) 2239.1294 0.12936578 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 1 By MS/MS By matching By MS/MS 1 1 1 73.911 73.928 3 0.00056907 27452 20181213_JW_Orientia_Karp_3_1 104.78 73.461 21563000 0 0 0 0 7528900 3358600 10675000 0 + 112 798 104 601;602;603 389;390 390 462 2 ADLIAYLK Unmodified 905.52222 0.52221879 772 C9JFR7;G4XXL9;P99999;Q6LER6 CYCS Cytochrome c yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 57.122 57.487 2 0.00493 23766 20181213_JW_Orientia_Karp_1_2 123.69 36.367 22178000 0 3515600 0 0 4850100 11858000 0 1953900 113 772 105 604;605;606;607;608 391;392;393;394;395 392 5 ADLINNLGTIAK Unmodified 1241.698 0.69795133 1057;251;1838 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;B4DTA5;Q86SX1;Q14568;B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;O14942;Q58FF8 EL52;HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.255 56.613 2 5.7917E-31 21036 20181213_JW_Orientia_Karp_2_2 252.14 140.03 292000000 50531000 77842000 119130000 18378000 11244000 13424000 455890 1000200 114 1057;251;1838 106 609;610;611;612;613;614;615;616 396;397;398;399;400;401;402;403;404 401 9 ADLINNLGTIAK Deamidation (NQ) 1242.682 0.68196691 1057;251;1838 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;B4DTA5;Q86SX1;Q14568;B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;O14942;Q58FF8 EL52;HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 1 2 2 59.535 59.825 2 0.0016286 26761 20181213_JW_Orientia_Karp_1_1 137.01 62.841 35189000 10049000 6165900 9805800 0 3019400 4640200 0 1508600 115 1057;251;1838 106 617;618;619;620;621;622;623;624;625 405;406;407;408;409 405 93 5 ADLNQGIGEPQSPSR Unmodified 1567.759 0.75904803 12 A0A024QZ77;Q96C19 EFHD2 EF-hand domain-containing protein D2 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 39.526 39.83 2 0.038666 12467 20181213_JW_Orientia_Karp_2_3 71.548 31.923 2221500 0 0 0 0 1224100 825980 0 171380 116 12 107 626;627;628 410 410 1 ADLSGITK Unmodified 803.43888 0.43888309 803 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.379 34.738 2 0.004443 9449 20181213_JW_Orientia_Karp_2_1 131.03 40.255 95281000 24248000 0 20078000 8954000 13027000 5449900 12948000 10576000 + 117 803 108 629;630;631;632;633;634;635;636 411;412;413;414;415;416;417;418 414 8 ADLSLADALTEPSPDIEGEIK Acetyl (Protein N-term) 2225.0951 0.095088762 879 E7EVA0;P27816;P27816-2;P27816-6;B4DM10;P27816-5;A0A024R2V2;A0A024R2S1;Q6NX68;Q05D06;P27816-7 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 77.511 77.502 2 4.3869E-75 31561 20181213_JW_Orientia_Karp_2_2 276.19 198.59 48828000 13228000 5179800 0 8242400 5855500 6058900 10263000 0 118 879 109 637;638;639;640;641;642;643 419;420;421;422;423;424 423 5 ADLSYVR Unmodified 822.42357 0.42356738 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 1 35.381 35.754 2 0.0094346 10367 20181213_JW_Orientia_Karp_3_1 148.33 40.583 404240000 247010000 82058000 44791000 6903000 11041000 0 6776000 5656900 119 1121 110 644;645;646;647;648;649;650;651;652 425;426;427;428;429;430;431;432 431 8 ADLTALFLPR Unmodified 1115.6339 0.63389451 583 Q59H95;B4DIX0;Q13045-2;Q13045-3;Q13045 FLII Protein flightless-1 homolog yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 72.053 72.136 2 0.0012382 32726 20181213_JW_Orientia_Karp_1_3 128.36 77.754 10457000 2771500 0 3412600 0 0 0 4272500 0 120 583 111 653;654;655;656 433;434;435;436 435 4 ADLTEYLSTHYK Unmodified 1439.6933 0.69325988 1649 P31930;B4DUL5 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 50.024 50.274 3 0.0067783 18899 20181213_JW_Orientia_Karp_1_2 109.39 35.488 155970000 41570000 17733000 64075000 19935000 1939300 10721000 0 0 121 1649 112 657;658;659;660;661;662 437;438;439;440 437 4 ADMEDLMSSK Oxidation (M) 1141.4631 0.46312529 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 1 1 34.059 34.342 2 0.0017286 10426 20181213_JW_Orientia_Karp_1_1 114.97 87.838 11103000 5914700 0 3129400 0 0 0 2059300 0 122 944 113 663;664;665 441;442 441 530;531 2 ADMEDLMSSK 2 Oxidation (M) 1157.458 0.45803991 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 23.306 23.796 2 0.0018643 5177 20181213_JW_Orientia_Karp_1_2 111.06 88.975 3281700 0 1155400 0 523620 0 0 806720 795960 123 944 113 666;667;668;669;670 443;444;445;446;447;448 444 530;531 6 ADMQNLVER Acetyl (Protein N-term) 1116.5234 0.52335778 498 D3DPU2;B2RDY9;B4DNW7;Q01518;Q5T0R1;Q01518-2;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R9;B4DNA3;B4DUZ8;Q5T0S3;Q5T0R8 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 1 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 59.202 59.462 2 0.0066246 24662 20181213_JW_Orientia_Karp_1_3 99.568 49.528 47167000 21732000 6804800 12804000 0 1819200 3400300 0 607060 124 498 114 671;672;673;674;675;676 449;450 450 2 ADNLDEIK Unmodified 916.45018 0.45017606 1074 Karp_00050 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.815 34.188 2 0.0041589 9924 20181213_JW_Orientia_Karp_1_2 146.79 42.42 147940000 55348000 38056000 27729000 7012500 11027000 0 5427900 3334500 125 1074 115 677;678;679;680;681;682;683 451;452;453;454;455;456 451 6 ADNSSIMDEISEIK Oxidation (M) 1566.7083 0.70831759 1170 Karp_00624 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.003 51.348 2 9.0288E-26 17589 20181213_JW_Orientia_Karp_3_1 238.07 121.55 94527000 19483000 25117000 16137000 8989900 8301600 7176000 7000600 2322800 126 1170 116 684;685;686;687;688;689;690;691 457;458;459;460;461;462;463;464 463 713 8 ADNSSIMDEISEIK Deamidation (NQ) 1551.6974 0.69741856 1170 Karp_00624 yes yes 0 1 0 0 By MS/MS By MS/MS 1 1 66.672 66.797 2 0.011046 29785 20181213_JW_Orientia_Karp_1_1 107.99 54.243 0 0 0 0 0 0 0 0 0 127 1170 116 692;693 465;466 465 568 2 ADNSSIMDEISEIK Unmodified 1550.7134 0.71340297 1170 Karp_00624 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 61.785 62.288 2 0.023954 23277 20181213_JW_Orientia_Karp_3_2 82.705 35.909 4175400 0 0 0 1754700 0 0 133720 2287000 128 1170 116 694;695;696 467 467 1 ADPAAASHPLLLNGDATVAQK Deamidation (NQ) 2060.0538 0.05383307 1611 P20591;F8W8T1;Q8NAA8;P20591-2;H9KVC7;H9KVC9;H9KVD0;H9KVC4;H9KVD3 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 1 1 2 1 49.319 49.661 2;3 0.012905 18296 20181213_JW_Orientia_Karp_1_3 82.859 40.212 522520000 104390000 189830000 152950000 7326600 17011000 37807000 819820 12389000 129 1611 117 697;698;699;700;701;702;703;704;705;706;707 468;469;470 470 1069 3 ADQLTEEQIAEFK Acetyl (Protein N-term) 1562.7464 0.74641766 497 Q9BRL5;B4DJ51;B2RDW0;H0Y7A7;P62158;F8WBR5;M0QZ52;G3V479 CALM3;CALM2;CALM1 Calmodulin yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.642 68.879 2 1.7936E-45 27703 20181213_JW_Orientia_Karp_2_1 260.57 168.34 417210000 0 63933000 86954000 25348000 104310000 68792000 41954000 25922000 130 497 118 708;709;710;711;712;713;714 471;472;473;474;475;476;477;478 474 7 ADQVDTQQLMR Oxidation (M) 1319.614 0.6139637 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 1 0 By MS/MS 1 33.418 33.616 2 0.0059008 9628 20181213_JW_Orientia_Karp_1_3 100.88 37.595 9516000 0 0 9516000 0 0 0 0 0 131 185 119 715 479 479 139 1 ADRDESSPYAAMLAAQDVAQR Oxidation (M) 2280.0441 0.044073019 1729 P62263;H0YB22;E5RH77 RPS14 40S ribosomal protein S14 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.721 45.896 3 1.7887E-05 16066 20181213_JW_Orientia_Karp_1_2 144.27 113.13 109550000 28294000 38566000 40959000 0 1731700 0 0 0 132 1729 120 716;717;718;719 480;481;482 481 1358 3 ADRDESSPYAAMLAAQDVAQR Unmodified 2264.0492 0.049158397 1729 P62263;H0YB22;E5RH77 RPS14 40S ribosomal protein S14 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 54.893 55.242 3 7.0699E-05 21891 20181213_JW_Orientia_Karp_1_3 129.51 73.099 146450000 55140000 37712000 51134000 1887600 0 0 572910 0 133 1729 120 720;721;722;723;724 483;484;485 484 3 ADSGTAGGAALAAPAPGPGSGGPGPR Acetyl (Protein N-term) 2158.0403 0.04030827 1935 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B yes yes 1 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 2 1 1 56.698 56.972 2;3 0.00090861 21467 20181213_JW_Orientia_Karp_2_1 83.436 57.024 151250000 39108000 14412000 19468000 10370000 36522000 22698000 0 8669800 134 1935 121 725;726;727;728;729;730;731;732;733 486;487;488;489;490;491 488 5 ADSIDNITVGMR Oxidation (M) 1306.6187 0.61871473 1438 Karp_02403 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 44.315 44.657 2 7.1003E-05 15297 20181213_JW_Orientia_Karp_1_3 163.9 103.88 46472000 18515000 13979000 8679900 0 0 0 4573000 724520 135 1438 122 734;735;736;737;738;739 492;493;494;495 493 1040 4 ADSLLAVVK Unmodified 914.54368 0.54368251 346 B7Z5X3;B7ZLP5;A8K329;Q15424;Q15424-4;Q15424-3;B7Z1C7;B7Z2F6;B7Z2Z1;Q15424-2;A0PJ47;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 51.817 52.066 2 0.00080231 18653 20181213_JW_Orientia_Karp_2_2 139.97 43.78 87541000 20404000 20345000 12219000 14362000 10885000 9326500 0 0 136 346 123 740;741;742;743;744;745 496 496 1 ADSSQAFNQVR Unmodified 1221.5738 0.57381344 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.958 33.279 2 6.1831E-10 9885 20181213_JW_Orientia_Karp_1_1 208.63 133.25 382620000 92399000 102070000 92788000 36778000 19525000 10576000 28487000 0 137 1169 124 746;747;748;749;750;751;752;753 497;498;499;500;501;502;503;504 497 8 ADSVGETK Unmodified 805.38176 0.38176214 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 10.823 11.275 2 0.0070035 1653 20181213_JW_Orientia_Karp_2_2 113.41 30.124 334110 0 0 0 0 133490 200620 0 0 138 1371 125 754;755;756;757 505;506;507;508 507 4 ADSVGETKADSVGGK Unmodified 1419.6842 0.68415175 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 2 2 2 2 21.877 22.3 2;3 0.00011632 4581 20181213_JW_Orientia_Karp_1_3 149.82 94.713 113300000 0 85505000 1946800 8318700 7606900 3692000 4165800 2066800 139 1371 126 758;759;760;761;762;763;764;765;766;767;768;769 509;510;511 510 3 ADSVGGKDAPIR Unmodified 1184.6149 0.61494998 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 24.78 25.138 3 0.0042786 6196 20181213_JW_Orientia_Karp_1_1 126.71 58.338 97368000 8244100 51126000 3992300 11388000 6667700 4875000 5870500 5205100 140 1371 127 770;771;772;773;774;775;776;777 512;513;514;515;516;517 512 6 ADSVGGKDAPIRK Unmodified 1312.7099 0.709913 1371 Karp_02001 yes yes 0 0 0 2 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 19.449 19.713 3 0.042196 3901 20181213_JW_Orientia_Karp_1_1 106.79 73.244 115600000 30561000 35671000 20847000 11107000 3919900 8714500 4776900 0 141 1371 128 778;779;780;781;782;783;784 518 518 1 ADTLTDEINFLR Unmodified 1406.7042 0.70415892 341;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;CON__P04259;P04259;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT6B;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 67.201 67.363 2 3.8738E-05 26143 20181213_JW_Orientia_Karp_3_2 169.99 95.821 67628000 12082000 0 17867000 0 13179000 7130300 0 17369000 + 142 341;793;805 129 785;786;787;788;789 519;520;521 521 3 ADTQTYQPYNK Unmodified 1327.6044 0.60444487 135 A0A024R6D4;P84090 ERH Enhancer of rudimentary homolog yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 29.962 30.372 2 6.1831E-10 8495 20181213_JW_Orientia_Karp_1_1 208.63 136.02 30631000 10677000 0 5395000 5678800 2560100 0 4205700 2114400 143 135 130 790;791;792;793;794;795 522 522 1 ADVQSIIGLQR Unmodified 1198.667 0.66698555 474 B2R8R5;Q13263;Q13263-2;M0R0K9 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 54.909 55.231 2 0.0045725 22215 20181213_JW_Orientia_Karp_1_2 107.11 51.1 114100000 26778000 36022000 29702000 6343600 8832500 6278500 144730 0 144 474 131 796;797;798;799;800;801;802 523;524;525 524 3 ADVVESWIGEK Unmodified 1231.6085 0.60846762 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16;Q14917 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 55.607 55.782 2 0.0010155 22300 20181213_JW_Orientia_Karp_1_3 129.16 80.873 27618000 10327000 0 11547000 0 2288100 3456000 0 0 145 316 132 803;804;805;806;807 526;527;528;529;530;531 528 6 ADYVSVSTIVK Unmodified 1180.634 0.63395408 1196 Karp_00815 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 51.268 51.518 2 0.00069602 18369 20181213_JW_Orientia_Karp_2_2 133.81 58.888 96151000 25357000 22836000 15663000 12783000 7772200 11740000 0 0 146 1196 133 808;809;810;811;812;813 532;533;534 534 3 AEAAQELAMNLLK Oxidation (M) 1416.7283 0.72826518 1265 Karp_02493;Karp_01306;Karp_01677;Karp_01055;Karp_02464;Karp_01711;Karp_00202;Karp_01500;Karp_01603 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 57.676 58.021 2 9.348E-07 22105 20181213_JW_Orientia_Karp_2_3 179.94 107.33 468970000 82637000 132860000 80985000 49583000 73717000 33394000 672530 15128000 147 1265 134 814;815;816;817;818;819;820;821 535;536;537;538;539;540;541;542 540 825 8 AEAAQELAMNLLK Unmodified 1400.7334 0.73335055 1265 Karp_02493;Karp_01306;Karp_01677;Karp_01055;Karp_02464;Karp_01711;Karp_00202;Karp_01500;Karp_01603 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 62.79 63.085 2 2.3649E-58 27576 20181213_JW_Orientia_Karp_1_1 275.48 173.42 371630000 142770000 19198000 125120000 6818000 39002000 29395000 64465 9265600 148 1265 134 822;823;824;825;826;827;828;829 543;544;545;546;547;548;549;550;551 543 9 AEAAQGLAR Unmodified 885.46683 0.46682918 1258 Karp_01914;Karp_02350;Karp_01437;Karp_00991;Karp_02171 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 23.475 23.776 2 0.0013863 5287 20181213_JW_Orientia_Karp_1_2 126.24 58.749 35714000 0 27415000 0 5073200 534290 2692000 0 0 149 1258 135 830;831;832;833;834 552;553 552 2 AEAEAWYQTK Unmodified 1195.551 0.55095274 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q96GE1;CON__Q9DCV7;Q3KNV1;Q3B834 KRT7 Keratin, type II cytoskeletal 7 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 38.772 39.022 2 4.8954E-06 12426 20181213_JW_Orientia_Karp_1_2 196.52 135.84 85369000 37577000 0 30567000 0 1924400 2500100 12800000 0 + 150 811 136 835;836;837;838;839;840;841 554;555;556;557;558;559 555 6 AEAERPEEQAEASGLK Unmodified 1713.817 0.81695684 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 29.218 29.401 3 0.037602 7580 20181213_JW_Orientia_Karp_1_3 72.523 26.632 4169800 882750 0 2778300 0 508800 0 0 0 151 1764 137 842;843;844 560 560 1 AEAESLYQSK Unmodified 1124.535 0.53496832 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 30.831 31.181 2 9.1808E-59 7356 20181213_JW_Orientia_Karp_2_2 301.78 225.3 968620000 216620000 193140000 218510000 120260000 60655000 47498000 111940000 0 + 152 995;996 138 845;846;847;848;849;850;851;852;853 561;562;563;564;565;566;567;568;569;570 565 9 AEAESWYQTK Unmodified 1211.5459 0.54586736 341;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;CON__O95678;O95678;CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT75;KRT6B;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 0 0 0 By MS/MS 1 36.947 37.598 2 0.00089698 11233 20181213_JW_Orientia_Karp_3_1 126.39 84.039 6562100 0 0 0 0 0 0 6562100 0 + 153 341;793;805 139 854 571 571 1 AEAGAGSATEFQFR Unmodified 1440.6634 0.66335673 1675 P46783;Q59GE4;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 46.083 46.427 2 1.9403E-17 16846 20181213_JW_Orientia_Karp_1_1 214.04 156.87 139490000 28488000 25490000 53480000 12706000 0 7168500 3229800 8930000 154 1675 140 855;856;857;858;859;860;861 572;573;574;575 572 4 AEAGDNLGALVR Unmodified 1184.6149 0.61494998 1683 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 47.13 47.41 2 0.0021959 17079 20181213_JW_Orientia_Karp_1_2 119.34 56.119 49086000 0 26102000 15291000 2491100 2975700 2227300 0 0 155 1683 141 862;863;864;865;866 576 576 1 AEAGPEGVAPAPEGEK Unmodified 1507.7155 0.71545188 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;B7Z602 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 36.038 36.22 2 0.013107 10931 20181213_JW_Orientia_Karp_1_2 90.861 60.037 13906000 3193000 6386900 4325900 0 0 0 0 0 156 545 142 867;868;869 577;578;579 578 3 AEAPLPSPK Unmodified 908.49673 0.49673232 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 34.997 35.327 2 0.00302 10128 20181213_JW_Orientia_Karp_3_1 113.66 59.047 78709000 27099000 16823000 13722000 0 2570600 1163800 8432900 8898600 157 1782 143 870;871;872;873;874;875;876 580;581;582;583;584 583 5 AEASIQAGAGDGEWEESEVK Unmodified 2061.9127 0.91270772 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 47.261 47.641 2 6.9683E-48 16886 20181213_JW_Orientia_Karp_1_3 241.39 173.87 23670000 0 9851000 9102000 2442700 1736600 0 537310 0 158 1782 144 877;878;879;880;881;882;883 585;586;587;588;589;590 587 6 AEATQGLAR Unmodified 915.47739 0.47739386 1132 Karp_00384;Karp_00536 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 23.497 23.924 2 0.00302 4179 20181213_JW_Orientia_Karp_3_2 113.66 22.949 19313000 0 6718300 0 2304900 3427400 1592400 2871600 2398700 159 1132 145 884;885;886;887;888;889 591;592;593 593 3 AEDGATPSPSNETPK Unmodified 1499.674 0.673981 1642 P29966;Q6NVI1 MARCKS Myristoylated alanine-rich C-kinase substrate yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 28.341 28.641 2 0.002948 7698 20181213_JW_Orientia_Karp_1_1 117.2 68.011 10818000 2314700 4514500 3177000 0 0 0 811750 0 160 1642 146 890;891;892;893 594;595 594 2 AEDGSVIDYELIDQDAR Unmodified 1907.8749 0.87486565 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;H0YM50;H0YNP5;B3KRQ1;H0YN28;H0YL33;H0YNA0 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 62.545 62.896 2 3.0413E-69 27007 20181213_JW_Orientia_Karp_1_2 286.53 206.21 632230000 375480000 202660000 0 16265000 0 0 240970 37581000 161 124 147 894;895;896;897;898;899;900 596;597;598;599;600;601;602 597 7 AEEDEILNR Unmodified 1087.5146 0.51456723 1637 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 37.772 38.06 2 0.0013744 11932 20181213_JW_Orientia_Karp_1_2 126.41 70.398 18173000 9261600 3604400 0 0 453740 0 4853500 0 162 1637 148 901;902;903;904 603;604 603 2 AEEGIAAGGVMDVNTALQEVLK Acetyl (Protein N-term);Oxidation (M) 2272.1257 0.12567738 1627 P25398 RPS12 40S ribosomal protein S12 yes yes 1 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 76.777 76.769 3 5.5223E-09 31184 20181213_JW_Orientia_Karp_2_2 153.83 119.91 370890000 102020000 43690000 57382000 20432000 36537000 37013000 73824000 0 163 1627 149 905;906;907;908;909;910;911 605;606;607;608;609;610;611;612;613 610 1253 9 AEEGIAAGGVMDVNTALQEVLK Acetyl (Protein N-term) 2256.1308 0.13076276 1627 P25398 RPS12 40S ribosomal protein S12 yes yes 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 78.408 78.373 2;3 1.0082E-38 32342 20181213_JW_Orientia_Karp_2_1 248.97 213.85 251540000 77995000 38434000 36110000 15222000 22597000 17552000 43629000 0 164 1627 149 912;913;914;915;916;917;918;919;920;921;922;923;924 614;615;616;617;618;619;620;621 617 8 AEEGIAAGGVMDVNTALQEVLK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 2273.1097 0.10969297 1627 P25398 RPS12 40S ribosomal protein S12 yes yes 1 1 1 0 By MS/MS By matching By matching By matching 1 1 1 1 76.651 76.652 2 4.0854E-13 35756 20181213_JW_Orientia_Karp_1_3 174.18 133.3 52395000 0 0 25986000 3601000 0 0 18787000 4021200 165 1627 149 925;926;927;928 622 622 1086 1253 1 AEEQPQVELFVK Acetyl (Protein N-term) 1457.7402 0.74021007 1491 Q5SRT3;Q53FB0;O00299 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.309 70.459 2 0.00204 28141 20181213_JW_Orientia_Karp_2_2 119.03 60.398 88198000 0 13467000 0 3866800 22930000 11725000 36210000 0 166 1491 150 929;930;931;932;933;934;935 623;624;625;626;627;628;629;630 628 8 AEEWGVQYVETSAK Unmodified 1595.7468 0.74675201 200 B4E364;A0A024RAG3;P11234;P11234-3;P11234-2;C9J6B1 RALB Ras-related protein Ral-B yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 51.895 52.289 2 0.00062979 20606 20181213_JW_Orientia_Karp_1_1 143.42 108.73 90724000 28117000 20548000 28124000 12143000 0 0 601500 1191000 167 200 151 936;937;938;939;940;941 631 631 1 AEEYEFLTPVEEAPK Unmodified 1750.8301 0.83014729 1035 J3KRE2;J3KTF8;V9HWE8;J3QQX2;P52565 ARHGDIA;HEL-S-47e Rho GDP-dissociation inhibitor 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 60.833 61.153 2 2.1645E-19 25689 20181213_JW_Orientia_Karp_1_3 216.91 170.09 274300000 90345000 72351000 42831000 11743000 17484000 11393000 13534000 14616000 168 1035 152 942;943;944;945;946;947;948;949 632;633;634;635;636;637;638;639;640 634 9 AEFVEVTK Unmodified 921.48075 0.48074791 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 38.466 38.787 2 0.0042154 11200 20181213_JW_Orientia_Karp_2_2 136.27 43.798 1012700000 433060000 285550000 94918000 55741000 43409000 29980000 70032000 0 + 169 792 153 950;951;952;953;954;955;956;957;958;959 641;642;643;644;645;646;647;648 645 8 AEFVNFIHK Deamidation (NQ) 1104.5604 0.56039521 1442 Karp_02417 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 4 3 3 4 3 4 1 4 48.715 49.038 2;3 0.0039322 17735 20181213_JW_Orientia_Karp_1_2 117.81 51.012 1868000000 478510000 558450000 177020000 329520000 73935000 145790000 368060 104440000 170 1442 154 960;961;962;963;964;965;966;967;968;969;970;971;972;973;974;975;976;977;978;979;980;981;982;983;984;985 649;650;651;652;653;654;655;656 652 955 8 AEFVNFIHK Unmodified 1103.5764 0.57637963 1442 Karp_02417 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 5 3 4 4 4 3 1 44.948 45.256 2;3 0.0044502 14266 20181213_JW_Orientia_Karp_3_2 128.61 67.926 8835500000 1711900000 1459600000 2711300000 26670000 2319600000 334290000 272190000 0 171 1442 154 986;987;988;989;990;991;992;993;994;995;996;997;998;999;1000;1001;1002;1003;1004;1005;1006;1007;1008;1009;1010;1011;1012 657;658;659;660;661;662;663;664 664 8 AEGIEIGEIK Unmodified 1057.5655 0.56554017 1132 Karp_00384 no no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 47.685 47.986 2 0.00019216 16298 20181213_JW_Orientia_Karp_2_2 145.46 70.417 141410000 32604000 39949000 29394000 1188000 12588000 14371000 0 11312000 172 1132 155 1013;1014;1015;1016;1017;1018;1019 665;666;667;668 667 4 AEGIEIGEVK Unmodified 1043.5499 0.5498901 1373 Karp_02079 no no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 43.354 43.891 2 0.011376 14199 20181213_JW_Orientia_Karp_2_1 90.827 34.098 27405000 0 0 0 21472000 0 0 1540600 4392300 173 1373 156 1020;1021;1022 669;670 669 2 AEGNPKPEIIWLR Unmodified 1521.8304 0.83036248 1927 Q92626;H7C1W1;Q92626-2 PXDN Peroxidasin homolog yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 51.296 51.52 3 0.002412 20207 20181213_JW_Orientia_Karp_1_1 123.28 90.541 26351000 7154700 0 8430600 8521400 2244600 0 0 0 174 1927 157 1023;1024;1025;1026 671;672 671 2 AEGPDVAVDLPK Unmodified 1209.6241 0.62411768 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.244 50.545 2 0.00083701 19080 20181213_JW_Orientia_Karp_1_2 138.76 97.881 194670000 47732000 37629000 33342000 36590000 14225000 23627000 0 1520600 175 1782 158 1027;1028;1029;1030;1031;1032;1033 673;674;675;676;677;678 674 6 AEGPEVDVNLPK Unmodified 1266.6456 0.6455814 1782 Q09666;B4DTV0;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.773 49.119 2 5.0923E-11 16076 20181213_JW_Orientia_Karp_3_2 195.83 149.37 1326500000 203450000 344120000 247260000 229900000 66329000 129610000 888960 104960000 176 1782 159 1034;1035;1036;1037;1038;1039;1040;1041 679;680;681;682;683;684;685;686 686 8 AEGSDVANAVLDGADCIMLSGETAK Unmodified 2493.1363 0.13631842 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 72.412 72.492 3 6.3203E-09 32946 20181213_JW_Orientia_Karp_1_3 158.8 126.83 114430000 0 41480000 39046000 10191000 0 3568500 20143000 0 177 1597 160 1042;1043;1044;1045;1046 687;688;689 688 3 AEGVLIHIIGGNDLTLMEVDEAVNR Unmodified 2677.3745 0.37451528 1404 Karp_02212 yes yes 0 0 0 0 By MS/MS By matching 1 1 72.548 72.647 3 0.002065 29644 20181213_JW_Orientia_Karp_2_1 71.002 40.12 22925000 0 0 0 6785300 0 0 16140000 0 178 1404 161 1047;1048 690 690 1 AEGVLIHIIGGNDLTLMEVDEAVNR 2 Deamidation (NQ) 2679.3425 0.34254645 1404 Karp_02212 yes yes 0 2 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 72.136 72.214 3 0.021075 29644 20181213_JW_Orientia_Karp_2_1 60.991 27.566 159250000 20203000 13284000 24889000 27613000 30238000 15327000 27694000 0 179 1404 161 1049;1050;1051;1052;1053;1054;1055 691 691 918;919 0 AEHDQLLLNYAK Unmodified 1413.7252 0.72522871 1613 P20700;E9PBF6;Q6DC98 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 43.235 43.506 3 0.0085839 14796 20181213_JW_Orientia_Karp_1_2 105.36 53.632 107710000 33230000 35575000 16723000 0 7070900 0 15111000 0 180 1613 162 1056;1057;1058;1059;1060 692;693 693 2 AEIGVMYLTNITAQVEEGK Oxidation (M) 2081.0351 0.035071462 1371 Karp_02001 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 7 5 5 7 6 7 69.005 69.186 2;3 1.4341E-165 30095 20181213_JW_Orientia_Karp_1_3 360.06 308.08 1678000000 370730000 223330000 267590000 62676000 129390000 135020000 266910000 222400000 181 1371 163 1061;1062;1063;1064;1065;1066;1067;1068;1069;1070;1071;1072;1073;1074;1075;1076;1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087;1088;1089;1090;1091;1092;1093;1094;1095;1096;1097;1098;1099;1100;1101;1102;1103;1104;1105;1106;1107;1108 694;695;696;697;698;699;700;701;702;703;704;705;706;707;708;709;710;711;712;713;714;715;716;717;718;719;720;721;722;723;724;725;726 704 950 30 AEIGVMYLTNITAQVEEGK Unmodified 2065.0402 0.04015684 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 7 7 9 3 2 2 4 3 75.52 75.552 2;3 4.2111E-84 32945 20181213_JW_Orientia_Karp_1_2 290.37 237.58 3166900000 1039000000 453400000 873690000 81818000 155220000 135890000 397180000 30773000 182 1371 163 1109;1110;1111;1112;1113;1114;1115;1116;1117;1118;1119;1120;1121;1122;1123;1124;1125;1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144;1145 727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749 732 23 AEIGVMYLTNITAQVEEGK Oxidation (M);Deamidation (NQ) 2082.0191 0.019087047 1371 Karp_02001 yes yes 0 1 1 0 By MS/MS 1 71.601 71.751 2 0.010659 26178 20181213_JW_Orientia_Karp_3_1 93.424 63.366 7780700 0 0 0 0 0 0 7780700 0 183 1371 163 1146 750 750 834 950 1 AEISELPSIVQDLANGNITWADVEAR Deamidation (NQ) 2811.3927 0.39266777 1667 P41250 GARS Glycine--tRNA ligase yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 75.855 75.881 3 0.0010823 35491 20181213_JW_Orientia_Karp_1_1 91.202 59.383 48348000 18075000 12444000 4049500 2395300 0 0 10565000 820150 184 1667 164 1147;1148;1149;1150;1151;1152 751;752;753 751 1116 3 AEKPPLSASSPQQRPPEPETGESAGTSR Unmodified 2890.4057 0.40569207 2012 Q9Y3Q8;Q8IV54 TSC22D4 TSC22 domain family protein 4 yes no 0 0 0 2 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 33.825 34.235 4 0.02964 9956 20181213_JW_Orientia_Karp_1_2 50.47 30.921 30590000 0 12021000 0 1035300 6470000 4562100 6501500 0 185 2012 165 1153;1154;1155;1156;1157 754 754 1 AELDVIGWQDIDILSH Unmodified 1822.9101 0.91012895 1147 Karp_00502 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 75.934 75.933 2 0.024067 31109 20181213_JW_Orientia_Karp_2_1 81.185 41.624 118960000 21521000 21077000 25052000 10770000 0 6660500 33882000 0 186 1147 166 1158;1159;1160;1161;1162;1163 755 755 1 AELEGEIGDNNIGLQAR Unmodified 1797.8857 0.88570511 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS 1 53.128 53.128 2 1.2705E-06 21312 20181213_JW_Orientia_Karp_1_1 184.11 129.62 40739000 40739000 0 0 0 0 0 0 0 187 1245 167 1164 756;757 757 2 AELGLNEHHQNEVINYMR Acetyl (Protein N-term);Oxidation (M) 2224.0331 0.033114403 1980 Q9NQ48 LZTFL1 Leucine zipper transcription factor-like protein 1 yes yes 1 0 1 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 47.229 47.58 3 0.023688 15249 20181213_JW_Orientia_Karp_3_2 51.147 31.056 26097000 0 4876500 2507900 2426900 9200700 4288400 0 2796100 188 1980 168 1165;1166;1167;1168;1169;1170 758;759 759 1525 2 AELIVQPELK Unmodified 1138.6598 0.6597749 1601 Q4LE79;P15924-2;P15924-3;P15924;B4E2A0;G1UI31;Q6ZP16 DSP variant protein;DSP Desmoplakin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 51.971 52.221 2 0.010924 20295 20181213_JW_Orientia_Karp_1_2 91.658 51.657 29969000 3589400 5988400 4990400 7031500 4131600 4237900 0 0 189 1601 169 1171;1172;1173;1174;1175;1176 760;761 761 2 AELKQQREEEATWQEQEAPR 3 Deamidation (NQ) 2458.1248 0.12482576 664 B4DYS3;O94851-2;O94851-5;O94851-6;O94851-4;O94851-3;O94851 MICAL2 Protein-methionine sulfoxide oxidase MICAL2 yes no 0 3 0 2 By matching By MS/MS 1 1 79.66 79.56 2 0.029429 30033 20181213_JW_Orientia_Karp_3_1 67.118 15.392 18403000 0 0 0 0 0 4690100 13713000 0 190 664 170 1177;1178 762 762 1564;1565;1566 1 AELLFQK Unmodified 847.48035 0.48035398 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 45.192 45.359 2 0.013891 16250 20181213_JW_Orientia_Karp_1_1 114.19 18.138 656960000 434810000 208870000 0 0 13285000 0 0 0 191 1273 171 1179;1180;1181;1182;1183 763;764;765;766 763 4 AELLVTEAPSK Unmodified 1156.634 0.63395408 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS 1 1 44.547 44.821 2 0.0051286 15440 20181213_JW_Orientia_Karp_1_3 104.79 50.638 9569500 0 6832100 2737400 0 0 0 0 0 192 195 172 1184;1185 767 767 1 AELLVTEAPSKPITVTVEEQR Unmodified 2309.2478 0.24784143 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.287 54.553 3 1.7424E-05 22213 20181213_JW_Orientia_Karp_1_1 140.8 120.06 417300000 105390000 126810000 99995000 21863000 32428000 30818000 0 0 193 195 173 1186;1187;1188;1189;1190;1191 768;769;770;771;772 768 5 AELNEFLTR Unmodified 1091.5611 0.56112349 1623 Q53G83;P23396;P23396-2;F2Z2S8;H0YCJ7;E9PPU1;E9PL09;E9PQ96;E9PJH4;H0YF32;E9PK82;H0YEU2;E9PQX2;H0YES8 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS 1 50.988 51.639 2 0.011802 17733 20181213_JW_Orientia_Karp_3_1 114.4 64.686 0 0 0 0 0 0 0 0 0 194 1623 174 1192 773 773 1 AELQQLR Acetyl (Protein N-term) 898.48723 0.48723027 762 C9J2Y4;E7EQY1;Q96C01 FAM136A Protein FAM136A yes no 1 0 0 0 By matching By matching By MS/MS 1 1 1 53.206 53.473 2 0.033643 19664 20181213_JW_Orientia_Karp_2_3 85.212 26.982 13013000 4510800 0 0 2534200 0 5968200 0 0 195 762 175 1193;1194;1195 774 774 1 AELSANYNYLENEPK Unmodified 1753.8159 0.81589421 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.903 50.22 2 1.1297E-113 18664 20181213_JW_Orientia_Karp_1_3 325.68 222.37 240060000 67845000 53475000 52048000 27178000 25207000 0 14305000 0 196 1149 176 1196;1197;1198;1199;1200;1201 775;776;777;778;779;780 777 6 AELTISHNLFNGGQDIIK Deamidation (NQ) 1970.0109 0.010905622 1392 Karp_02141 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 2 60.538 60.789 3 0.0031082 25444 20181213_JW_Orientia_Karp_1_3 103.39 68.779 341530000 71733000 96337000 76600000 4080400 57322000 26971000 0 8486400 197 1392 177 1202;1203;1204;1205;1206;1207;1208;1209;1210;1211;1212;1213;1214;1215;1216;1217 781;782;783;784;785;786;787;788;789 783 889;1867 9 AEMEVLLASK Unmodified 1089.574 0.57399637 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By MS/MS 1 50.79 50.988 2 0.016241 19185 20181213_JW_Orientia_Karp_1_3 105.98 57.692 0 0 0 0 0 0 0 0 0 198 1803 178 1218 790 790 1 AENDDVDLTPGGSSGGSSAAVSAFMAMAALGSDTGGSVR Unmodified 3614.6101 0.61008347 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 75.586 75.586 3 1.892E-06 35360 20181213_JW_Orientia_Karp_1_1 74.171 51.967 33743000 21271000 9453900 0 0 3018500 0 0 0 199 1318 179 1219;1220;1221 791;792 791 2 AENDDVDLTPGGSSGGSSAAVSAFMAMAALGSDTGGSVR Deamidation (NQ) 3615.5941 0.59409906 1318 Karp_01280 yes yes 0 1 0 0 By MS/MS By matching 1 1 76.578 76.602 3 8.3135E-07 36011 20181213_JW_Orientia_Karp_1_1 86.483 63.115 5839800 4406900 0 0 1432900 0 0 0 0 200 1318 179 1222;1223 793 793 753 1 AENFFILR Unmodified 1008.5393 0.53926584 947;1714 F8WCF6;P59998;P59998-3;R4GN08;F8WDD7;P59998-4;P59998-2 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 no no 0 0 0 0 By MS/MS By MS/MS 2 1 59.701 59.8 2 0.0082425 25615 20181213_JW_Orientia_Karp_1_1 122.19 45.71 13266000 11721000 0 1545500 0 0 0 0 0 201 947;1714 180 1224;1225;1226 794;795 794 2 AEPPKAPEQEQAAPGPAAGGEAPK Unmodified 2297.1288 0.12878893 1751 P80723 BASP1 Brain acid soluble protein 1 yes yes 0 0 0 1 By matching By MS/MS 1 1 33.231 33.832 3 0.026089 9606 20181213_JW_Orientia_Karp_3_1 57.216 26.149 5903800 0 0 0 3300900 0 0 2602900 0 202 1751 181 1227;1228 796 796 1 AEPPSEVIDAYR Unmodified 1345.6514 0.65139506 1105 Karp_00283 yes yes 0 0 0 0 By MS/MS 1 47.625 48.276 2 0.04263 16376 20181213_JW_Orientia_Karp_3_1 72.434 36.1 6402400 0 0 0 0 0 0 6402400 0 203 1105 182 1229 797 797 1 AEQALIHAIQTLGEEYTINR Unmodified 2269.1703 0.17025981 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 1 1 2 1 1 1 67.638 67.812 3;4 0.00010079 29897 20181213_JW_Orientia_Karp_1_3 118.72 81.168 179150000 36155000 16078000 32622000 0 39057000 15224000 18315000 21699000 204 1376 183 1230;1231;1232;1233;1234;1235;1236;1237;1238 798;799;800 799 3 AEQEEEFISNTLFK Unmodified 1683.7992 0.79918151 16 Q05CP8;A0A024QZJ7;Q16204 CCDC6 Coiled-coil domain-containing protein 6 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 63.055 63.255 2 0.00086763 26959 20181213_JW_Orientia_Karp_1_3 160.18 104.17 18390000 7939800 1802300 0 924390 3926900 3796400 0 0 205 16 184 1239;1240;1241;1242;1243;1244 801;802;803 801 3 AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK Acetyl (Protein N-term) 3605.6758 0.6757785 1035 J3KRE2;J3KTF8;V9HWE8;J3QQX2;P52565;J3KS60;J3QW41;J3KRY1;P52565-2 ARHGDIA;HEL-S-47e Rho GDP-dissociation inhibitor 1 yes no 1 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 58.198 58.485 3 2.9675E-07 24728 20181213_JW_Orientia_Karp_1_1 103.59 87.318 546110000 155760000 172780000 141510000 30045000 16430000 28363000 0 1217100 206 1035 185 1245;1246;1247;1248;1249;1250;1251 804;805;806 804 3 AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK Acetyl (Protein N-term);Deamidation (NQ) 3606.6598 0.65979408 1035 J3KRE2;J3KTF8;V9HWE8;J3QQX2;P52565;J3KS60;J3QW41;J3KRY1;P52565-2 ARHGDIA;HEL-S-47e Rho GDP-dissociation inhibitor 1 yes no 1 1 0 1 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 58.794 59.121 3 0.00065309 23893 20181213_JW_Orientia_Karp_1_2 65.248 50.431 53796000 8384100 24983000 14433000 3562200 0 0 0 2433900 207 1035 185 1252;1253;1254;1255;1256;1257 807;808;809 809 381;382 3 AEQINQAAGEASAVLAK Unmodified 1669.8635 0.8635131 1999 Q9UJZ1-2;Q9UJZ1;F2Z2I8;Q6ZNW0 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 48.544 48.86 2 2.7745E-06 17816 20181213_JW_Orientia_Karp_1_3 153.2 95.978 58062000 22543000 17034000 12366000 0 2762500 1575000 234650 1547100 208 1999 186 1258;1259;1260;1261;1262;1263;1264 810;811;812 811 2 AEQWNVNYVETSAK Unmodified 1637.7686 0.76855009 1588 P11233;H7C3P7 RALA Ras-related protein Ral-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 48.475 48.776 2 4.34E-12 18309 20181213_JW_Orientia_Karp_1_1 206.74 137.96 202850000 48422000 58398000 36112000 19788000 17661000 12004000 0 10467000 209 1588 187 1265;1266;1267;1268;1269;1270;1271 813;814;815;816;817;818 813 6 AESGESGGPPGSQDSAAGAEGAGAPAAAASAEPK Acetyl (Protein N-term) 2951.3017 0.30168051 65 A0A024R258;B3KNI8;B3KNI2;A0A024R284;Q9UMX0-2;Q9UMX0 UBQLN1 Ubiquilin-1 yes no 1 0 0 0 By matching By MS/MS 1 1 49.657 50.082 3 6.5307E-06 16905 20181213_JW_Orientia_Karp_3_1 82.151 62.94 14555000 0 0 11931000 0 0 0 2624100 0 210 65 188 1272;1273 819 819 1 AESIIYTTEK Unmodified 1153.5867 0.58666954 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 38.917 39.207 2 3.8926E-28 11844 20181213_JW_Orientia_Karp_2_1 247.58 162.66 2114000000 534150000 582710000 722010000 0 0 43888000 231230000 0 211 1074 189 1274;1275;1276;1277;1278;1279;1280;1281 820;821;822;823;824;825;826;827 823 8 AETECQNTEYQQLLDIK Unmodified 2081.9575 0.95754942 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 2 1 2 57.514 57.834 2;3 1.0736E-304 23890 20181213_JW_Orientia_Karp_1_2 430.14 300.4 464510000 156300000 112810000 76031000 0 38190000 49234000 121570 31818000 + 212 798 190 1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292 828;829;830;831;832;833;834;835;836 830 9 AETECQNTEYQQLLDIK Deamidation (NQ) 2082.9416 0.94156501 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 0 0 By MS/MS 1 60.357 60.707 2 0.038235 25791 20181213_JW_Orientia_Karp_1_2 86.498 50.82 0 0 0 0 0 0 0 0 0 + 213 798 190 1293 837 837 1 AETIDITSGER Unmodified 1190.5779 0.57789577 1426 Karp_02372 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 39.862 40.206 2 6.886E-06 12983 20181213_JW_Orientia_Karp_1_2 176.6 96.369 70274000 22608000 20595000 11071000 5088300 0 1902200 8110700 898990 214 1426 191 1294;1295;1296;1297;1298;1299;1300 838;839 839 2 AETSTNINSEQTIK Unmodified 1534.7475 0.74748029 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS 1 32.134 32.332 2 0.026659 9022 20181213_JW_Orientia_Karp_1_3 80.69 36.381 4606100 0 0 4606100 0 0 0 0 0 215 1366 192 1301 840 840 1 AEVAGIDIQEVR Unmodified 1298.683 0.68302954 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 2 4 2 2 52.492 52.831 2;3 1.7695E-16 19194 20181213_JW_Orientia_Karp_2_2 214.82 124.94 20843000000 4048300000 7665300000 3363000000 1944400000 1676600000 1446500000 555450000 143270000 216 1296 193 1302;1303;1304;1305;1306;1307;1308;1309;1310;1311;1312;1313;1314;1315;1316;1317;1318;1319;1320;1321;1322 841;842;843;844;845;846;847;848;849;850;851;852;853;854;855;856;857;858;859;860 852 19 AEVQVLVLDGR Acetyl (Protein N-term) 1239.6823 0.68230126 1666 Q5QTS3;Q53H34;P40429;M0QZU1;B4DNC8 RPL13A 60S ribosomal protein L13a yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 74.237 74.253 2 0.00096119 34203 20181213_JW_Orientia_Karp_1_3 128.67 72.111 54316000 27797000 7646000 18874000 0 0 0 0 0 217 1666 194 1323;1324;1325 861;862;863 863 3 AEVVLNSEAAK Unmodified 1129.5979 0.59790293 1104 Karp_00281 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 34.265 34.623 2 0.00037866 10614 20181213_JW_Orientia_Karp_1_1 160.77 100.33 136560000 41851000 41837000 21814000 6224800 4264600 2832100 8648400 9089600 218 1104 195 1326;1327;1328;1329;1330;1331;1332;1333 864;865;866;867;868;869 864 6 AEYEGDGIPTVFVAVAGR Unmodified 1849.921 0.92102798 252 E9PBS1;A0A024RD93;P22234;P22234-2;D6RF62 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 69.9 70.066 2 0.02349 31360 20181213_JW_Orientia_Karp_1_3 107.39 70.243 14208000 0 4103800 4113300 0 0 0 5990800 0 219 252 196 1334;1335;1336 870 870 1 AFADAMEVIPSTLAENAGLNPISTVTELR Unmodified 3029.538 0.53795179 349 B7Z9L0;B7Z2Z8;A8K3C3;P50991;P50991-2;B7Z2F4 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS 1 76.474 76.523 3 0.025822 36071 20181213_JW_Orientia_Karp_1_2 42.057 23.152 5287900 0 5287900 0 0 0 0 0 0 220 349 197 1337 871 871 1 AFAIAGYSK Unmodified 926.48617 0.48616764 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 43.895 44.195 2 0.036052 15702 20181213_JW_Orientia_Karp_1_1 74.301 39.006 84011000 23179000 22796000 13521000 15502000 4009300 0 5004300 0 221 1168 198 1338;1339;1340;1341;1342;1343 872 872 1 AFDLIVDRPVTLVR Unmodified 1612.9301 0.93007653 384 H3BPJ9;A8K761;O96000-2;O96000;Q96RX5;H3BV16 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 0 0 0 1 By MS/MS By matching By matching By MS/MS By matching 1 1 1 2 1 61.411 61.663 3 0.00806 26851 20181213_JW_Orientia_Karp_1_1 101.89 75.764 26353000 8772200 4385200 0 0 5856000 6225400 0 1114700 222 384 199 1344;1345;1346;1347;1348;1349 873;874 873 2 AFEAAVTTGINNLMLK Unmodified 1691.8916 0.89164211 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 66.935 67.036 2 3.6916E-08 25972 20181213_JW_Orientia_Karp_3_2 186.58 125.37 12833000 0 0 0 0 9038000 3795400 0 0 223 1428 200 1350;1351;1352;1353 875;876;877 877 3 AFEAAVTTGINNLMLK Oxidation (M) 1707.8866 0.88655673 1428 Karp_02381 yes yes 0 0 1 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 61.563 61.865 2 0.0099322 23810 20181213_JW_Orientia_Karp_2_2 99.732 62.588 54212000 14440000 15107000 0 0 10525000 7411100 2739700 3988500 224 1428 200 1354;1355;1356;1357;1358;1359 878;879 878 1029 1 AFEDEMSGR Oxidation (M) 1056.4182 0.418224 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2;F8W6C1 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 24.993 25.304 2 0.0021926 5923 20181213_JW_Orientia_Karp_1_2 115.49 85.687 7525100 2253200 2443100 2050900 0 270140 154300 0 353410 225 506 201 1360;1361;1362;1363;1364;1365 880 880 325 1 AFFSPFR Unmodified 870.43882 0.43882351 1927 Q92626 PXDN Peroxidasin homolog yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 56.77 56.98 2 0.039556 23858 20181213_JW_Orientia_Karp_1_1 83.614 55.36 17662000 9722500 1468600 3871900 0 448190 2150500 0 0 226 1927 202 1366;1367;1368;1369;1370 881 881 1 AFGPGLEGGLVNK Unmodified 1257.6717 0.67173657 1797 Q14315-2;Q14315 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.636 51.981 2 0.00040258 19949 20181213_JW_Orientia_Karp_1_3 156.16 89.199 63267000 18686000 14184000 20116000 3297700 1331600 2833600 1689500 1128200 227 1797 203 1371;1372;1373;1374;1375;1376;1377;1378 882;883;884 884 3 AFGPGLQGGSAGSPAR Unmodified 1428.711 0.71097563 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 40.34 40.67 2 0.00050227 13076 20181213_JW_Orientia_Karp_1_3 135.04 93.338 859360000 250780000 140270000 178310000 37935000 9580500 0 118610000 123880000 228 1615 204 1379;1380;1381;1382;1383;1384;1385 885;886;887;888;889 887 5 AFGYYGPLR Unmodified 1042.5236 0.52361577 456 B2R6F3;P84103-2;P84103 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.736 51.043 2 0.00075452 17287 20181213_JW_Orientia_Karp_3_1 150.02 102.17 272050000 52306000 53653000 32538000 58980000 27693000 43662000 3219100 0 229 456 205 1386;1387;1388;1389;1390;1391;1392 890;891;892;893;894;895;896 896 7 AFITNIPFDVK Unmodified 1263.6863 0.68632401 1701 P52272-2;P52272;M0R019;B4DEG4;M0R0N3;M0R2T0;M0R0Y6;M0QYQ7 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 66.336 66.538 2 6.7211E-05 29697 20181213_JW_Orientia_Karp_1_1 174.98 98.038 111190000 37897000 7647100 25851000 0 6332600 5487500 2031500 25945000 230 1701 206 1393;1394;1395;1396;1397;1398;1399 897;898;899;900;901;902;903;904 897 8 AFLADPSAFVAAAPVAAATTAAPAAAAAPAK Unmodified 2751.4596 0.45956554 229 Q53HW2;A8K4Z4;A0A024RBS2;P05388;Q6NSF2;F8VWS0;Q53HK9;P05388-2;B4E3D5;F8W1K8;Q3MHV2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 73.326 73.369 3 2.1935E-06 33671 20181213_JW_Orientia_Karp_1_3 99.873 82.033 254660000 113570000 25511000 68214000 0 0 4317800 30819000 12226000 231 229 207 1400;1401;1402;1403;1404;1405;1406 905;906;907;908;909;910 908 6 AFLASGPYLTHQQK Acetyl (Protein N-term) 1601.8202 0.82019173 727 E9PH64;B7Z7N1;E7EWZ0;E9PF49;Q9Y6M9;Q5JVG7 NDUFB9;DKFZp566O173 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 61.255 61.575 2 0.00014765 26780 20181213_JW_Orientia_Karp_1_1 158.56 96.397 104910000 43625000 21317000 15746000 3038700 5902900 6588600 3813800 4879300 232 727 208 1407;1408;1409;1410;1411;1412;1413;1414 911;912;913;914;915 911 5 AFLASPEYVNLPINGNGK 2 Deamidation (NQ) 1904.952 0.95199376 1574 V9HWE9;P09211;A8MX94 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 72.094 72.195 2 1.8801E-23 32966 20181213_JW_Orientia_Karp_1_2 221.86 168.65 127710000 31391000 51364000 32583000 9476300 0 0 0 2890800 233 1574 209 1415;1416;1417;1418;1419;1420 916;917;918;919;920 917 1056;1057 5 AFLASPEYVNLPINGNGKQ 2 Deamidation (NQ) 2033.0106 0.010571271 1574 V9HWE9;P09211;A8MX94 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 2 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 5 4 4 5 4 2 70.888 70.99 2;3 1.1116E-17 26201 20181213_JW_Orientia_Karp_3_1 209.25 153.99 295640000 76796000 43676000 52319000 12312000 21216000 20361000 62856000 6100500 234 1574 210 1421;1422;1423;1424;1425;1426;1427;1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438;1439;1440;1441;1442;1443;1444;1445;1446;1447;1448;1449;1450;1451;1452;1453 921;922;923;924;925;926;927;928;929;930;931;932;933 931 1056;1057;1923 10 AFLLSLMR Unmodified 949.54191 0.54190838 1353 Karp_01624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 65.779 65.877 2 0.0050335 28670 20181213_JW_Orientia_Karp_1_3 122.13 83.166 2245200 0 0 2245200 0 0 0 0 0 235 1353 211 1454;1455;1456 934;935;936 936 3 AFLTLAEDILR Unmodified 1260.7078 0.70778773 1720 P61026;Q53T70 RAB10 Ras-related protein Rab-10 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 72.947 73.022 2 4.6919E-07 33675 20181213_JW_Orientia_Karp_1_2 183.43 132.24 38285000 9338400 12817000 2912100 0 0 0 13218000 0 236 1720 212 1457;1458;1459;1460 937;938 938 2 AFNASTQSMESGIPVPVEITAYENK Unmodified 2682.2847 0.28469722 1174 Karp_00628 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 1 1 1 69.644 69.77 2;3 2.9424E-08 31165 20181213_JW_Orientia_Karp_1_3 145.99 111.56 168480000 71954000 21568000 42978000 0 6491800 4199700 15500000 5791800 237 1174 213 1461;1462;1463;1464;1465;1466;1467;1468;1469;1470 939;940;941;942;943;944 943 6 AFNASTQSMESGIPVPVEITAYENK Oxidation (M) 2698.2796 0.27961184 1174 Karp_00628 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 2 65.774 65.969 2;3 0.0025146 28951 20181213_JW_Orientia_Karp_1_2 79.837 49.924 131270000 50915000 35037000 21523000 1635300 2716500 6248300 13194000 0 238 1174 213 1471;1472;1473;1474;1475;1476;1477;1478;1479;1480;1481 945;946;947 945 729 2 AFNNNQNFDINIFR Deamidation (NQ) 1726.8063 0.80633258 1116 Karp_00304 yes yes 0 1 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 70.334 70.506 2 0.0024054 31662 20181213_JW_Orientia_Karp_1_3 132.03 98.619 19697000 0 6190600 4441300 0 0 1891100 4910900 2263300 239 1116 214 1482;1483;1484;1485;1486 948;949 948 492;493 2 AFQIMQEELR Oxidation (M);Deamidation (NQ) 1280.6071 0.60708741 917 F1T0J2;Q14789;Q14789-2 GOLGB1 Golgin subfamily B member 1 yes no 0 1 1 0 By MS/MS By matching 1 1 61.177 61.607 2 0.032655 26393 20181213_JW_Orientia_Karp_1_2 86.833 17.987 26164000 0 25010000 0 0 0 0 0 1154500 240 917 215 1487;1488 950 950 1713 1 AFQYDIVCNGVELSSGAIR Deamidation (NQ) 2098.9994 0.99935466 1168 Karp_00622 yes yes 0 1 0 0 By MS/MS By matching By MS/MS 1 1 1 66.247 66.363 2 0.011555 29824 20181213_JW_Orientia_Karp_1_1 99.711 64.704 474820000 258330000 100200000 116300000 0 0 0 0 0 241 1168 216 1489;1490;1491 951;952 951 562 1 AFSAVDTDGNGTINAQELGAALK Deamidation (NQ) 2263.0968 0.096820096 1992 Q9NZT1 CALML5 Calmodulin-like protein 5 yes yes 0 1 0 0 By MS/MS 1 65.817 66.268 2 1.452E-44 23232 20181213_JW_Orientia_Karp_3_1 231.13 166.3 8671900 0 0 0 0 0 0 8671900 0 242 1992 217 1492 953 953 1230 1 AFSYYGPLR Unmodified 1072.5342 0.53418046 558 B4DEK2;C9JAB2;Q16629-3;Q16629-2;Q16629-4;Q16629;Q8NB80 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 50.414 50.652 2 0.00077991 18064 20181213_JW_Orientia_Karp_2_3 153.71 103.01 75174000 17975000 0 0 26994000 14130000 16075000 0 0 243 558 218 1493;1494;1495;1496 954;955;956;957 957 4 AFTELQAK Unmodified 906.48108 0.48108226 868 E5RGS4;O60925 PFDN1 Prefoldin subunit 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 35.907 36.177 2 0.010003 9768 20181213_JW_Orientia_Karp_2_2 103.83 47.112 48357000 19470000 0 8565100 0 8010000 2097900 10214000 0 244 868 219 1497;1498;1499;1500;1501 958 958 1 AFVDFLSDEIK Unmodified 1282.6445 0.64451877 374 A8K651;Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.247 70.368 2 3.8451E-07 28483 20181213_JW_Orientia_Karp_2_3 185.6 117.7 202830000 50456000 23806000 17672000 13283000 29075000 16133000 52408000 0 245 374 220 1502;1503;1504;1505;1506;1507;1508 959;960;961;962;963;964;965;966 964 8 AFVHWYVGEGMEEGEFSEAR Oxidation (M) 2345.0059 0.005896599 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;B4DN58;Q15670;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;C9J2C0;Q9NY65-2;Q9NY65 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-8 chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.566 54.882 3 7.5475E-06 20147 20181213_JW_Orientia_Karp_2_2 146.88 115.42 332310000 84080000 46987000 149970000 15143000 18078000 15054000 0 2996900 246 512;1887 221 1509;1510;1511;1512;1513;1514;1515 967;968;969;970;971;972;973 972 328 7 AFVHWYVGEGMEEGEFSEAR Unmodified 2329.011 0.010981977 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;B4DN58;Q15670;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;C9J2C0;Q9NY65-2;Q9NY65 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-8 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 58.995 59.288 3 7.9163E-08 24869 20181213_JW_Orientia_Karp_1_2 154.52 133.51 131820000 31732000 58247000 17980000 7351200 7446100 8815700 246550 0 247 512;1887 221 1516;1517;1518;1519;1520;1521;1522 974;975;976;977;978;979 975 6 AFVLSSVDELEQQR Unmodified 1619.8155 0.81550028 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.367 60.627 2 3.442E-87 25403 20181213_JW_Orientia_Karp_1_3 322.27 213.7 202520000 80248000 86423000 0 10228000 13289000 12330000 0 0 248 1466;1549 222 1523;1524;1525;1526;1527;1528;1529 980;981;982;983;984;985;986 982 7 AGAAPYVQAFDSLLAGPVAEYLK Unmodified 2350.2209 0.2208984 498 D3DPU2;B2RDY9;B4DI38;Q01518;Q5T0R1;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 76.643 76.642 3 0.035822 35741 20181213_JW_Orientia_Karp_1_3 39.367 9.4028 20496000 10088000 3280900 5261300 0 1865900 0 0 0 249 498 223 1530;1531;1532;1533 987 987 1 AGAGSAAVSGAGTPVAGPTGR Acetyl (Protein N-term) 1752.8755 0.87547477 1531 O95295 SNAPIN SNARE-associated protein Snapin yes yes 1 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1 1 1 51.596 51.942 2 9.6885E-05 18045 20181213_JW_Orientia_Karp_3_1 164.93 122.46 68564000 17606000 18702000 11766000 5105000 5075200 3763000 6225300 322540 250 1531 224 1534;1535;1536;1537;1538;1539;1540;1541;1542 988;989;990 990 3 AGAIAPCEVTVPAQNTGLGPEK Unmodified 2179.0943 0.094317676 229 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;P05388-2;F8VPE8;G3V210;F8VW21;B4E3D5;Q8NHW5;F8VQY6;F8VRK7 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By MS/MS 1 53.886 53.886 2 0.0072948 21751 20181213_JW_Orientia_Karp_1_1 86.548 62.034 7239000 7239000 0 0 0 0 0 0 0 251 229 225 1543 991 991 1 AGAISASGPELQGAGHSK Unmodified 1636.8169 0.81689726 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 31.802 32.179 3 0.018904 8918 20181213_JW_Orientia_Karp_1_3 86.367 58.161 88892000 33244000 0 13067000 4957300 0 3982100 21513000 12128000 252 1782 226 1544;1545;1546;1547;1548;1549;1550 992;993;994;995;996;997 994 6 AGAWFSYK Unmodified 928.4443 0.44430282 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 47.916 48.165 2 0.0059101 17570 20181213_JW_Orientia_Karp_1_2 116.9 53.756 95116000 17811000 35869000 10550000 13222000 2902600 14762000 0 0 253 1245 227 1551;1552;1553;1554;1555;1556 998;999;1000;1001;1002 999 5 AGDIIEVITPK Unmodified 1154.6547 0.65468953 1184 Karp_00677 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.329 58.616 2 0.00018675 24778 20181213_JW_Orientia_Karp_1_1 156.16 102.4 254370000 110340000 49049000 37685000 3170400 16936000 29033000 0 8154100 254 1184 228 1557;1558;1559;1560;1561;1562;1563 1003;1004;1005;1006;1007;1008;1009 1003 7 AGDMLIDSDLQENITR Oxidation (M) 1805.8465 0.84654241 1444 Karp_02422 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 55.611 55.98 2 4.3367E-09 22628 20181213_JW_Orientia_Karp_1_2 185.2 105.1 67769000 0 27402000 16845000 6362300 8080100 8955100 0 124280 255 1444 229 1564;1565;1566;1567;1568;1569;1570 1010;1011;1012 1011 1045 3 AGDSIELSEQAK Unmodified 1246.6041 0.60411052 1131 Karp_00376 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 36.521 36.879 2 9.6434E-18 11265 20181213_JW_Orientia_Karp_1_2 225.22 149.16 77612000 12049000 25797000 19738000 2497000 6261500 831860 9091200 1346500 256 1131 230 1571;1572;1573;1574;1575;1576;1577;1578 1013;1014;1015;1016 1014 4 AGEAQAYQWSSK Unmodified 1324.6048 0.60477922 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 36.401 36.651 2 0.00064432 11557 20181213_JW_Orientia_Karp_1_1 145.09 97.887 62609000 30155000 0 21293000 4803700 6357100 0 0 0 257 1251 231 1579;1580;1581;1582;1583 1017;1018;1019;1020 1017 3 AGEARPGPTAESASGPSEDPSVNFLK Unmodified 2570.2249 0.22487416 693 B4E3V2;Q13501-2;Q13501;E9PFW8;E7EMC7;E3WH17 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 47.946 48.216 3 0.021942 17369 20181213_JW_Orientia_Karp_1_3 77.939 31.237 21496000 7749900 0 9055800 0 0 0 0 4690600 258 693 232 1584;1585;1586 1021 1021 1 AGELTPEEEAQYKK Acetyl (Protein N-term) 1633.7835 0.78353145 1992 Q9NZT1;Q53H37 CALML5 Calmodulin-like protein 5 yes no 1 0 0 1 By MS/MS 1 42.995 42.995 2 0.029975 14968 20181213_JW_Orientia_Karp_1_1 76.332 37.184 0 0 0 0 0 0 0 0 0 259 1992 233 1587 1022 1022 1 AGEVLLLENLR Unmodified 1225.703 0.7030367 1433 Karp_02390 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1 62.512 62.752 2 0.0012496 24205 20181213_JW_Orientia_Karp_2_2 125.75 63.967 14108000 6265100 0 3976900 0 3147900 0 0 718310 260 1433 234 1588;1589;1590;1591;1592;1593;1594 1023;1024;1025;1026 1025 4 AGFAGDDAPR Unmodified 975.44101 0.44100836 1717;1743;351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;P63267-2;F8WCH0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;G5E9R0;E7EVS6;C9JZR7;C9JUM1;C9JTX5;Q6S8J3;A5A3E0;P0CG38;L0R5C4;P0CG39;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;POTEE;POTEF;POTEI;POTEM;POTEJ;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 1 2 1 30.653 31.054 2 0.00091289 8061 20181213_JW_Orientia_Karp_2_3 126.07 67.15 2373700000 660380000 751300000 334600000 180300000 44969000 35727000 180100000 186340000 261 351;1717;1743 235 1595;1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606 1027;1028;1029;1030;1031;1032;1033;1034 1032 8 AGFDDLGINVGATK Unmodified 1376.6936 0.69359423 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.508 59.801 2 1.6087E-46 24871 20181213_JW_Orientia_Karp_1_3 269.44 191.18 343760000 129030000 33779000 74800000 3866400 44734000 36058000 21491000 0 262 1066 236 1607;1608;1609;1610;1611;1612;1613 1035;1036;1037;1038;1039;1040;1041 1037 7 AGFSVEFISENTGLSK Unmodified 1684.8308 0.83081599 1132;1373;1258;1265 Karp_00384;Karp_00536;Karp_01914;Karp_02350;Karp_01437;Karp_00991;Karp_02493;Karp_01306;Karp_01677;Karp_01055;Karp_02464;Karp_01711;Karp_00202;Karp_01500;Karp_02079 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1 1 63.837 64.063 2 2.1237E-179 25152 20181213_JW_Orientia_Karp_2_3 364.34 209 1279400000 493550000 224520000 136600000 31595000 192030000 132690000 5742200 62649000 263 1132;1258;1265;1373 237 1614;1615;1616;1617;1618;1619;1620;1621;1622;1623 1042;1043;1044;1045;1046;1047;1048;1049;1050;1051;1052 1050 11 AGFSVEFISENTGLSK Deamidation (NQ) 1685.8148 0.81483158 1132;1373;1258;1265 Karp_00384;Karp_00536;Karp_01914;Karp_02350;Karp_01437;Karp_00991;Karp_02493;Karp_01306;Karp_01677;Karp_01055;Karp_02464;Karp_01711;Karp_00202;Karp_01500;Karp_02079 no no 0 1 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 65.956 66.207 2 2.3846E-13 23205 20181213_JW_Orientia_Karp_3_1 203.88 116.24 47038000 0 1940000 11394000 1803900 8064100 8535500 13726000 1574300 264 1132;1258;1265;1373 237 1624;1625;1626;1627;1628;1629;1630 1053 1053 526 1 AGGADAVQTVTGGLR Unmodified 1371.7106 0.71064128 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 46.455 46.8 2 5.1138E-06 16682 20181213_JW_Orientia_Karp_1_2 169.09 107.53 186290000 53936000 60408000 54706000 2788700 0 2441400 233170 11781000 265 185 238 1631;1632;1633;1634;1635;1636;1637 1054;1055 1054 2 AGGEAGVTLGQPHLSR Acetyl (Protein N-term) 1590.8114 0.81141795 232 F8W810;Q53HK3;B2R5N2;A8K2Y2;A0A024RBY4;Q2VIR3-2;Q2VIR3;P41091 EIF2S3;EIF2S3L Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 49.007 49.315 2 5.8947E-06 18680 20181213_JW_Orientia_Karp_1_1 163.71 103.65 108340000 27440000 36910000 29474000 5263100 3263700 5437400 553250 0 266 232 239 1638;1639;1640;1641;1642;1643;1644 1056;1057;1058;1059 1056 4 AGGPATPLSPTR Unmodified 1123.5986 0.59857163 1044 J9JID7;Q03252 LMNB2 Lamin-B2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 36.291 36.649 2 0.0022051 10169 20181213_JW_Orientia_Karp_3_2 119.22 70.164 87065000 19733000 16956000 29250000 2899600 1719600 2915900 10451000 3139700 267 1044 240 1645;1646;1647;1648;1649;1650;1651;1652 1060;1061;1062;1063;1064 1064 5 AGGPGLER Unmodified 755.3926 0.3926016 1520;1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91;H0Y5C6;O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;H7C5L4 FLNA;FLJ00119;FLNB;DKFZp686A1668 Filamin-A;Filamin-B no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 22.869 23.169 2 0.0078189 4949 20181213_JW_Orientia_Karp_1_3 110.81 40.809 13342000 0 6425900 3956600 1118500 0 699200 1142200 0 268 1615;1520 241 1653;1654;1655;1656;1657 1065;1066;1067 1066 3 AGGPTTPLSPTR Unmodified 1153.6091 0.60913632 1613 P20700;E9PBF6;Q6DC98 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 36.425 36.782 2 0.0022051 11142 20181213_JW_Orientia_Karp_1_3 119.22 71.649 168480000 41144000 40108000 45803000 8324200 5578100 4759300 14881000 7881500 269 1613 242 1658;1659;1660;1661;1662;1663;1664;1665 1068;1069;1070;1071;1072;1073;1074;1075 1070 8 AGGSAALSPSK Unmodified 944.49271 0.49270958 1926 Q92522 H1FX Histone H1x yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 22.798 23.063 2 1.898E-05 4786 20181213_JW_Orientia_Karp_3_1 169.93 99.679 17141000 2618000 8287600 2214000 997780 742500 838900 1442500 0 270 1926 243 1666;1667;1668;1669;1670;1671;1672 1076;1077;1078;1079;1080;1081 1081 6 AGGSPAPGPETPAISPSK Unmodified 1619.8155 0.81550028 1652 P33316;H0YKI0 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 41.024 41.404 2 0.015382 13514 20181213_JW_Orientia_Karp_1_3 85.457 50.279 14810000 0 3878700 4585200 1912700 0 2392200 2041100 0 271 1652 244 1673;1674;1675;1676;1677 1082 1082 1 AGITTIEAVK Acetyl (Protein N-term) 1043.5863 0.58627561 494 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-3;P06753-5;P06753-6;Q5VU61;P06753-4;Q8NAG3;B4DWT5;D6R904;D6RFM2 DKFZp686J1372;TPM3 Tropomyosin alpha-3 chain yes no 1 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 61.742 62.069 2 0.0078285 26296 20181213_JW_Orientia_Karp_1_3 96.034 47.751 95856000 0 10249000 33744000 0 48140000 0 0 3723400 272 494 245 1678;1679;1680;1681 1083;1084 1084 2 AGIVDPTK Unmodified 799.44397 0.44396847 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.089 32.447 2 0.013321 7932 20181213_JW_Orientia_Karp_3_2 98.458 29.075 1028400000 215820000 415820000 123670000 34078000 58249000 21682000 115290000 43815000 273 1296 246 1682;1683;1684;1685;1686;1687;1688;1689 1085;1086;1087;1088 1088 4 AGIVDPTKVVR Unmodified 1153.6819 0.68190733 1296 Karp_01187 yes yes 0 0 0 1 By MS/MS By MS/MS 1 1 42.562 42.737 3 0.032947 14372 20181213_JW_Orientia_Karp_1_2 85.355 35.001 23486000 16611000 6874700 0 0 0 0 0 0 274 1296 247 1690;1691 1089;1090 1090 1 AGLAPLEVR Unmodified 924.53927 0.53926584 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 47.146 47.455 2 0.022263 17106 20181213_JW_Orientia_Karp_1_2 82.75 35.008 128320000 69200000 41648000 9143300 3699600 0 3245400 0 1380500 275 1520 248 1692;1693;1694;1695;1696;1697 1091;1092;1093;1094 1091 4 AGLDALAIK Unmodified 870.51747 0.51746776 2047 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 53.291 53.581 2 0.0041869 20973 20181213_JW_Orientia_Karp_1_3 108.09 20.333 617220000 79938000 0 475940000 16679000 0 44483000 0 184150 + 276 2047 249 1698;1699;1700;1701;1702;1703;1704;1705;1706;1707 1095;1096;1097;1098;1099 1096 5 AGLLGQPR Unmodified 810.47119 0.47118627 126 A0A024R648;Q9Y5J7;G3V502 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 34.903 35.233 2 0.025135 9971 20181213_JW_Orientia_Karp_2_3 85.359 19.556 10473000 4476800 0 2461000 961980 0 1038500 1534900 0 277 126 250 1708;1709;1710;1711;1712 1100 1100 1 AGLNCSTENMPIK Oxidation (M) 1449.6592 0.65919933 956 H0YJS4;G3V4T5;Q53XC0;P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 0 0 1 0 By MS/MS 1 33.458 33.458 2 0.0067913 10021 20181213_JW_Orientia_Karp_1_1 118.23 49.386 0 0 0 0 0 0 0 0 0 278 956 251 1713 1101 1101 538 1 AGLNSLEAVK Acetyl (Protein N-term);Deamidation (NQ) 1043.5499 0.5498901 649 B4DVY2;V9HW56;P67936;B4DTB1 HEL-S-108;TPM4 Tropomyosin alpha-4 chain yes no 1 1 0 0 By MS/MS By MS/MS By matching 2 2 1 61.737 62.027 2 0.0021068 25029 20181213_JW_Orientia_Karp_2_2 115.7 43.469 12726000 0 0 0 0 7346600 4459100 0 920200 + 279 649 252 1714;1715;1716;1717;1718 1102;1103;1104 1102 227 3 AGLQFPVGR Unmodified 943.52395 0.52395013 28;1602;1580;1899 A3KPC7;A0A024RAS2;Q08AJ9;B2R5B3;A4FTV9;A0A024R017;Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;B2R5B6;Q96QV6;Q9BTM1-2;V9GZN0;Q71UI9-5;P16104;Q8IUE6;Q71UI9;P0C0S5;C9J0D1;Q71UI9-2 HIST1H2AH;H2AFJ;HIST1H2AB;HIST1H2AK;HIST1H2AC;HIST1H2AJ;HIST2H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AA;H2AFV;H2AFX;HIST2H2AB;H2AFZ Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2A.V;Histone H2AX;Histone H2A type 2-B;Histone H2A.Z no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 1 2 3 2 2 50.368 50.634 2 0.00035555 18923 20181213_JW_Orientia_Karp_1_1 161.68 92.298 78715000000 23660000000 30396000000 18470000000 3217500000 556760000 1753100000 3453900 658970000 280 28;1602;1899;1580 253 1719;1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736;1737;1738;1739 1105;1106;1107;1108;1109;1110;1111;1112;1113;1114;1115;1116;1117;1118;1119;1120 1105 15 AGLQVYNK Unmodified 891.48142 0.48141661 906 E9PNW4;Q6FHM9;E9PR17;P13987 CD59 CD59 glycoprotein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 31.794 32.203 2 6.1706E-05 9484 20181213_JW_Orientia_Karp_1_1 185.22 83.624 115900000 0 48743000 22285000 6736300 6184800 5228000 17146000 9572500 281 906 254 1740;1741;1742;1743;1744;1745;1746;1747 1121;1122;1123;1124;1125;1126;1127;1128;1129 1121 9 AGLVDDFEK Unmodified 992.48148 0.48147619 1526 O75947;O75947-2;F5H608;A0PJH2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.547 47.797 2 0.0044811 17308 20181213_JW_Orientia_Karp_1_2 106.68 40.254 128430000 25929000 42378000 28405000 14409000 6536400 10770000 0 0 282 1526 255 1748;1749;1750;1751;1752;1753;1754 1130;1131;1132;1133;1134;1135;1136 1131 7 AGLYQSAEQQQKRWQR 4 Deamidation (NQ) 1979.9337 0.93371793 686 B4E2Y8 yes yes 0 4 0 2 By MS/MS 1 37.038 37.236 2 0.038495 11291 20181213_JW_Orientia_Karp_1_3 57.225 10.382 120940000 0 0 120940000 0 0 0 0 0 283 686 256 1755 1137 1137 1574;1575;1576;1577 1 AGMTHIVR Oxidation (M) 899.46472 0.46472069 524 H7C3M2;H7C422;B3KS36;Q8TBW1;Q96QL0;P39023;B4DN06;F8WCR1 RPL3 60S ribosomal protein L3 yes no 0 0 1 0 By MS/MS 1 16.731 16.731 2 0.041406 2894 20181213_JW_Orientia_Karp_1_1 89.369 40.011 0 0 0 0 0 0 0 0 0 284 524 257 1756 1138 1138 1 AGNLGGGVVTIER Unmodified 1241.6728 0.67279921 1051 K7EJT5;K7EP65;K7EKS7;K7ELC4;K7EMH1;K7ERI7;Q7Z4W8;P35268 RPL22 60S ribosomal protein L22 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 44.743 45.093 2 0.00069322 15764 20181213_JW_Orientia_Karp_1_2 167.2 103.66 149250000 0 149250000 0 0 0 0 0 0 285 1051 258 1757;1758;1759;1760;1761;1762;1763 1139;1140;1141;1142;1143;1144;1145;1146 1141 8 AGPGTLSVTIEGPSK Unmodified 1412.7511 0.75110911 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 49.149 49.495 2 2.962E-19 16298 20181213_JW_Orientia_Karp_3_2 213.63 129.32 313190000 65822000 86065000 95249000 18051000 8266800 15205000 319660 24207000 286 1520 259 1764;1765;1766;1767;1768;1769;1770;1771 1147;1148;1149;1150;1151;1152;1153 1153 7 AGPIWDLR Unmodified 926.4974 0.49740102 475;469 Q05CK9;B2R8Z8;O60506-4;O60506-3;O60506-2;O60506;Q59GL1;B7Z645;O60506-5;Q0VGD6;B2R7W4;O43390;B4DT28;B4DMB1;Q6MZS5;O43390-4;O43390-3;O43390-2 SYNCRIP;HNRPR;HNRNPR;DKFZp686A13234 Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 54.342 54.622 2 0.0085537 19961 20181213_JW_Orientia_Karp_2_2 108.46 62.11 109650000 69844000 18905000 0 4143300 4865500 11893000 0 0 287 475;469 260 1772;1773;1774;1775;1776 1154;1155;1156;1157 1156 4 AGQSAAGAAPGGGVDTR Unmodified 1441.691 0.69096847 1615 P21333-2;P21333;Q5HY54 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 27.506 27.868 2 7.1622E-07 7350 20181213_JW_Orientia_Karp_1_1 161.87 106.41 13070000 3935900 0 5372400 0 0 626590 1519500 1615900 288 1615 261 1777;1778;1779;1780;1781 1158;1159 1158 2 AGQSVIGLQMGTNK Unmodified 1402.7238 0.7238485 1807 Q15417-2;Q15417;E9PDU6;Q15417-3 CNN3 Calponin-3;Calponin yes no 0 0 0 0 By MS/MS 1 47.276 47.276 2 0.003613 17350 20181213_JW_Orientia_Karp_1_1 122.46 76.301 0 0 0 0 0 0 0 0 0 289 1807 262 1782 1160 1160 1 AGQVVTIWAAGAGATHSPPTDLVWK Unmodified 2532.3125 0.31250737 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;P02545-2;W8QEH3;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 64.388 64.518 3 0.00019914 28465 20181213_JW_Orientia_Karp_1_1 101 70.586 89234000 25584000 30272000 14418000 0 11615000 7344900 0 0 290 1543;1544;1851 263 1783;1784;1785;1786;1787;1788 1161;1162;1163;1164;1165 1161 5 AGSIGIISR Unmodified 872.50797 0.50796571 1120 Karp_00318 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 40.162 40.472 2 0.0036279 13692 20181213_JW_Orientia_Karp_1_1 110.76 44.458 86917000 34324000 14276000 21092000 0 2582700 0 14146000 496740 291 1120 264 1789;1790;1791;1792;1793;1794 1166;1167;1168;1169;1170 1166 5 AGTGIIAGGAMR Oxidation (M) 1089.5601 0.56007764 1225 Karp_00892 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 32.899 33.261 2 0.00010195 9459 20181213_JW_Orientia_Karp_1_3 162.64 109.55 74256000 26641000 24935000 15071000 0 0 0 4014900 3594600 292 1225 265 1795;1796;1797;1798;1799 1171;1172;1173 1172 788 3 AGTGIIAGGAMR Unmodified 1073.5652 0.56516301 1225 Karp_00892 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 39.968 40.151 2 0.025662 12818 20181213_JW_Orientia_Karp_1_3 99.013 41.423 33658000 18945000 7464400 7248500 0 0 0 0 0 293 1225 265 1800;1801;1802 1174 1174 0 AGTGVDNVDLEAATR Unmodified 1487.7216 0.72159989 1505 O43175;V9HW79;Q5SZU1;B3KSC3 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 45.851 46.144 2 1.4345E-08 16080 20181213_JW_Orientia_Karp_1_3 182.37 113.74 67446000 15449000 18494000 22638000 5374800 0 2822000 0 2668400 294 1505 266 1803;1804;1805;1806;1807;1808 1175;1176;1177;1178;1179 1177 5 AGTMIAFGEFGLK Oxidation (M) 1356.6748 0.67477304 1235 Karp_00902 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 61.503 61.79 2 1.1183E-07 22914 20181213_JW_Orientia_Karp_3_2 190.57 119.67 94659000 25802000 2062700 27519000 0 19063000 11309000 1815900 7087200 295 1235 267 1809;1810;1811;1812;1813;1814;1815 1180;1181;1182;1183;1184 1184 798 5 AGTQIENIDEDFR Unmodified 1506.6951 0.69505079 1509 O43707;F5GXS2;O43707-3;B4E337;B4DSX0;K7EP19;B3W6H4 ACTN4;MLL-ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 50.384 50.729 2 1.4056E-07 19051 20181213_JW_Orientia_Karp_1_3 190.36 118.74 166330000 59982000 35879000 34135000 8184500 6108600 7993200 10006000 4042500 296 1509 268 1816;1817;1818;1819;1820;1821;1822;1823 1185;1186;1187;1188 1187 4 AGTQIENIEEDFR Unmodified 1520.7107 0.71070086 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;Q86TX4;G3V2N5;B4DRP5;P35609-2;P35609;B2R8Y4;Q08043;B7Z4V1;B4DZQ2;G3V5M4;G3V380 ACTN1;ACTN2;ACTN3 Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.71 54.068 2 3.1792E-34 21844 20181213_JW_Orientia_Karp_1_1 245.13 164.44 197350000 78846000 30258000 54509000 11643000 8988300 7838300 3526200 1745300 297 133 269 1824;1825;1826;1827;1828;1829;1830;1831 1189;1190;1191;1192;1193 1189 5 AGVAPLQVK Unmodified 881.53345 0.53345218 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 38.746 38.92 2 0.0097096 12835 20181213_JW_Orientia_Karp_1_1 94.662 43.959 58400000 23508000 18891000 15285000 0 715190 0 0 0 298 1615 270 1832;1833;1834;1835;1836 1194;1195;1196;1197;1198 1194 5 AGVGIMPK Oxidation (M) 787.42621 0.42620992 1359 Karp_01808 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 28.447 28.862 2 0.014052 6168 20181213_JW_Orientia_Karp_3_2 92.692 48 11141000 0 8625600 0 827720 0 759280 0 928540 299 1359 271 1837;1838;1839;1840;1841;1842 1199;1200;1201;1202;1203 1203 937 5 AGVLAHLEEER Unmodified 1222.6306 0.63060004 47;944 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 37.413 37.697 2;3 0.0027151 11622 20181213_JW_Orientia_Karp_1_3 114.86 71.088 84315000 22737000 43110000 14862000 742410 961250 0 1901200 0 300 47;944 272 1843;1844;1845;1846;1847;1848;1849;1850;1851 1204;1205;1206 1206 3 AGVSFSGHR Acetyl (Protein N-term) 958.46208 0.46207815 1815 Q16643;Q16643-3;D6R9W4;D6RFI1 DBN1 Drebrin yes no 1 0 0 0 By matching By matching By MS/MS 1 1 1 37.144 37.345 2 0.029792 11049 20181213_JW_Orientia_Karp_2_3 76.478 36.815 21303000 12235000 5999700 0 0 0 3067800 0 0 301 1815 273 1852;1853;1854 1207 1207 1 AGVVGPELHEQLLSAEK Unmodified 1775.9418 0.94176342 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 48.011 48.321 3 0.036214 15515 20181213_JW_Orientia_Karp_3_2 48.112 14.426 72339000 13560000 29759000 10978000 4104800 3966300 0 0 9971500 302 1803 274 1855;1856;1857;1858;1859;1860 1208;1209 1209 2 AGWNAYIDNLMADGTCQDAAIVGYK Acetyl (Protein N-term);Oxidation (M) 2774.2316 0.23161579 1567 P07737;CON__P02584 PFN1 Profilin-1 yes no 1 0 1 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 76.016 76.01 3 1.1108E-21 28630 20181213_JW_Orientia_Karp_3_1 186.58 163.69 48166000 8407800 6735400 0 2949700 6384300 3769700 17727000 2191800 303 1567 275 1861;1862;1863;1864;1865;1866;1867 1210;1211;1212 1211 1184 3 AGYIEVNTPMVLNQK Unmodified 1675.8603 0.86034198 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By matching 1 1 57.66 57.965 2 1.7652E-13 24486 20181213_JW_Orientia_Karp_1_1 206.36 124.83 7521600 6006800 0 0 0 0 0 0 1514800 304 1376 276 1868;1869 1213;1214 1214 2 AGYQSTLTR Unmodified 995.50361 0.50360861 1654 P35555;Q75N88 FBN1 Fibrillin-1 yes no 0 0 0 0 By MS/MS 1 28.956 29.708 2 0.021121 7382 20181213_JW_Orientia_Karp_3_1 99.013 35.594 0 0 0 0 0 0 0 0 0 305 1654 277 1870 1215 1215 1 AGYYFDGISR Unmodified 1147.5298 0.52982336 784 CON__ENSEMBL:ENSBTAP00000016046 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 50.085 50.285 2 0.040324 18960 20181213_JW_Orientia_Karp_1_2 72.325 30.877 22025000 10104000 7084200 0 0 0 4836700 0 0 + 306 784 278 1871;1872;1873 1216 1216 1 AHAFAVQQK Unmodified 998.52976 0.52976379 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 20.422 20.687 2 0.0045372 4323 20181213_JW_Orientia_Karp_1_1 106.42 65.113 22447000 7584000 7889200 3221000 1185100 440250 687250 1440300 0 307 1803 279 1874;1875;1876;1877;1878;1879;1880 1217;1218;1219;1220 1217 4 AHATTSNTVSK Unmodified 1115.5571 0.55710075 1868 Q6NZI2;B3KRY5 PTRF Polymerase I and transcript release factor yes no 0 0 0 0 By MS/MS By matching 1 1 5.7 5.6995 2 0.00035012 921 20181213_JW_Orientia_Karp_1_2 147.73 97.1 833970 0 417840 0 0 0 0 416130 0 308 1868 280 1881;1882 1221 1221 1 AHEPTYFTVDCAEAGQGDVSIGIK Unmodified 2564.1853 0.18531753 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By matching 1 1 55.873 56.147 3 0.033384 22904 20181213_JW_Orientia_Karp_1_2 39.999 20.836 21067000 0 12627000 8440800 0 0 0 0 0 309 1615 281 1883;1884 1222 1222 1 AHFNLDESGVLSLDR Unmodified 1671.8216 0.82164829 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;B7Z602;E9PJ21;Q05D91;Q6IN67;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 55.138 55.404 3 0.036289 22819 20181213_JW_Orientia_Karp_1_1 56.514 23.581 28408000 3827300 10193000 8555000 603250 2732900 2496900 0 0 310 545 282 1885;1886;1887;1888;1889;1890 1223 1223 1 AHFSANQHPELCDNTQITSTDK Unmodified 2513.1241 0.12411425 1135 Karp_00415 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 35.891 36.182 3 0.0066095 10516 20181213_JW_Orientia_Karp_3_1 119.62 88.157 17122000 3370400 5822100 2940800 0 669190 0 4319800 0 311 1135 283 1891;1892;1893;1894;1895 1224;1225;1226;1227 1227 4 AHGPGLEGGLVGK Unmodified 1190.6408 0.6407708 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 33.72 34.153 3 0.0013746 9857 20181213_JW_Orientia_Karp_1_3 139.31 57.278 47995000 24998000 20203000 0 1212200 0 0 947400 634340 312 1520 284 1896;1897;1898;1899;1900;1901 1228;1229;1230 1230 3 AHIANPSGASTECFVTDNADGTYQVEYTPFEK Unmodified 3518.5572 0.55724327 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS 1 58.233 58.583 3 1.8512E-06 24404 20181213_JW_Orientia_Karp_1_2 97.482 80.943 52213000 0 52213000 0 0 0 0 0 0 313 1520 285 1902 1231 1231 1 AHIANPSGASTECFVTDNADGTYQVEYTPFEK Deamidation (NQ) 3519.5413 0.54125885 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 1 0 0 By matching By MS/MS By MS/MS 1 2 1 60.071 60.17 3 1.2474E-07 25195 20181213_JW_Orientia_Karp_1_3 114.9 95.025 15098000 7295200 0 7802800 0 0 0 0 0 314 1520 285 1903;1904;1905;1906 1232;1233;1234 1232 1020 3 AHLGTALK Unmodified 809.47594 0.4759373 366 A8K517;P62266;D6RDJ2;D6RIX0;D6R9I7;D6RD47 RPS23 40S ribosomal protein S23 yes no 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 21.018 21.296 2 0.031504 3986 20181213_JW_Orientia_Karp_2_3 81.784 28.23 27323000 6784700 8163100 6216600 1924100 1114100 1250000 1870400 0 315 366 286 1907;1908;1909;1910;1911;1912;1913 1235;1236;1237 1237 3 AHLLSLVDVMQR Unmodified 1380.7548 0.7547547 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 57.082 57.485 3 0.0061201 23825 20181213_JW_Orientia_Karp_1_2 104.07 69.385 8022500 0 2175700 0 0 0 3550000 0 2296800 316 1466;1549 287 1914;1915;1916;1917;1918;1919 1238;1239;1240;1241 1239 4 AHLLSLVDVMQR Oxidation (M) 1396.7497 0.74966932 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 1 1 1 48.95 49.318 2;3 0.00051014 18317 20181213_JW_Orientia_Karp_1_2 146.11 109.41 73484000 0 45699000 14689000 6161100 2168500 2431000 108830 2226700 317 1466;1549 287 1920;1921;1922;1923;1924;1925;1926;1927;1928 1242;1243 1242 1081 1 AHLMEIQVNGGTVAEK Deamidation (NQ) 1696.8454 0.8454202 524 H7C3M2;H7C422;B3KS36;Q8TBW1;Q96QL0;P39023;Q49AJ9;B5MCW2;Q9BT63;Q9NY85;G5E9G0 RPL3;rpl3 60S ribosomal protein L3 yes no 0 1 0 0 By MS/MS By MS/MS By matching 1 1 1 46.265 46.448 3 0.02093 16563 20181213_JW_Orientia_Karp_1_2 85.493 42.111 56491000 26482000 17304000 12704000 0 0 0 0 0 318 524 288 1929;1930;1931 1244;1245 1245 192 2 AHNNQQILSYGLSSYGYDAR Unmodified 2256.056 0.055958335 1454 Karp_02591 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.41 50.717 3 7.2552E-05 17870 20181213_JW_Orientia_Karp_2_2 123 90.636 309500000 99011000 61346000 51961000 34614000 22949000 27153000 12467000 0 319 1454 289 1932;1933;1934;1935;1936;1937;1938 1246;1247;1248;1249;1250;1251;1252 1250 7 AHNNQQILSYGLSSYGYDAR Deamidation (NQ) 2257.04 0.039973919 1454 Karp_02591 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 56.122 56.399 3 0.00068391 23028 20181213_JW_Orientia_Karp_1_2 114.55 91.679 91257000 19822000 16991000 32550000 0 12683000 8762900 0 447090 320 1454 289 1939;1940;1941;1942;1943;1944 1253;1254;1255 1254 984;985;1879;1880 3 AHQVVEDGYEFFAK Unmodified 1638.7678 0.7678218 1724 V9HW04;P62140;Q9UPN1;B7ZB67;B4DJ75;F8VYE8;A0A024RBP2;F8W0W8;B3KXM2;P62136-3;P36873;P62136;P36873-2;P62136-2;E9PMD7;C4TNW6;B4DNE3 HEL-S-80p;PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 0 0 0 0 By matching By MS/MS 1 1 48.982 49.157 2 0.023954 18198 20181213_JW_Orientia_Karp_1_2 82.705 63.738 10647000 4433700 6213500 0 0 0 0 0 0 321 1724 290 1945;1946 1256 1256 1 AHSIQIMK Oxidation (M) 942.49569 0.49568646 443 M0R3D6;M0R1A7;B4DM94;M0R117;B4DM74;B4DUV3;Q53HD3;B2R4C0;Q02543;Q76N54;M0R0P7 RPL18A 60S ribosomal protein L18a yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 19.6 19.97 2 0.011422 2258 20181213_JW_Orientia_Karp_3_2 97.798 57.02 14274000 4988000 3183100 2174300 1087000 910580 756330 752070 422810 322 443 291 1947;1948;1949;1950;1951;1952;1953;1954 1257;1258;1259;1260;1261 1261 292 5 AHSSMVGVNLPQK Oxidation (M) 1382.6976 0.69763375 1539 V9HWF4;P00558-2;P00558;B4E1H9 HEL-S-68p;PGK1 Phosphoglycerate kinase;Phosphoglycerate kinase 1 yes no 0 0 1 0 By MS/MS By matching 1 1 30.625 30.801 3 0.03717 8820 20181213_JW_Orientia_Karp_1_1 69.846 36.807 17190000 13211000 0 0 0 3978500 0 0 0 323 1539 292 1955;1956 1262 1262 1 AHVQEVAQHNLK Unmodified 1372.7211 0.72114638 128 A0A024R663;Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2;G3V4Y7 KTN1 Kinectin yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 19.443 19.8 3 0.00049599 4268 20181213_JW_Orientia_Karp_1_1 129.74 98.02 17355000 4133500 5009500 3402200 1327000 757350 831370 1429400 464280 324 128 293 1957;1958;1959;1960;1961;1962;1963;1964 1263;1264;1265;1266 1263 4 AIADLTETSIPSVSAECK Unmodified 1890.9245 0.92445838 1069 Karp_00038 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.464 58.757 2 7.3572E-17 20373 20181213_JW_Orientia_Karp_3_1 255.85 201.38 874690000 248900000 233570000 244710000 42528000 55368000 47200000 2417800 0 325 1069 294 1965;1966;1967;1968;1969;1970;1971 1267;1268;1269;1270;1271;1272;1273 1273 7 AIAELGIYPAVDPLDSTSR Unmodified 1987.0262 0.026221336 1560 Q0QEN7;V9HW31;P06576;H0YH81 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 72.273 72.366 2 0.0067597 29237 20181213_JW_Orientia_Karp_3_2 121.45 61.292 287530000 74110000 53460000 72245000 15897000 0 0 46870000 24945000 326 1560 295 1972;1973;1974;1975;1976;1977 1274;1275 1275 2 AIAFSEALMPQYK Unmodified 1467.7432 0.74318696 1140 Karp_00452 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 61.833 62.16 2 0.0022885 26794 20181213_JW_Orientia_Karp_1_2 151.15 108.43 30074000 20125000 0 5161100 763690 2678400 0 279230 1066300 327 1140 296 1978;1979;1980;1981;1982;1983;1984 1276;1277 1277 2 AIAFSEALMPQYK Oxidation (M) 1483.7381 0.73810158 1140 Karp_00452 yes yes 0 0 1 0 By MS/MS 1 55.885 56.235 2 0.00075169 22864 20181213_JW_Orientia_Karp_1_2 175.65 130.8 0 0 0 0 0 0 0 0 0 328 1140 296 1985 1278 1278 675 1 AIAHYEQSADYYK Unmodified 1557.71 0.70997257 35 M0R0Y2;A0A024R0R9;P54920;M0R2M1;M0R027;A0A024R0V6;M0R058;B4DGP9;B4DIV0;Q9H115-3;Q9H115-2;Q9H115 NAPA;NAPB Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 33.457 33.747 3 0.039348 9747 20181213_JW_Orientia_Karp_1_2 50.897 30.801 44387000 16957000 13749000 12020000 0 0 0 0 1660900 329 35 297 1986;1987;1988;1989 1279 1279 1 AIANECQANFISIK Unmodified 1577.7872 0.78717704 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.671 52.016 2 3.808E-06 20518 20181213_JW_Orientia_Karp_1_1 184.87 114.81 126140000 31584000 27352000 37810000 6244700 4217900 2539400 13860000 2530100 330 1708 298 1990;1991;1992;1993;1994;1995;1996;1997 1280;1281;1282;1283;1284;1285 1280 6 AIDALIPIGK Unmodified 1009.6172 0.61718181 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 60.948 61.235 2 3.4453E-06 26472 20181213_JW_Orientia_Karp_1_1 175.91 134.88 948420000 480080000 127210000 131820000 10880000 64830000 81752000 0 51849000 331 1380 299 1998;1999;2000;2001;2002;2003;2004;2005 1286;1287;1288;1289;1290;1291;1292;1293 1286 8 AIDIGCVSQLR Unmodified 1230.6391 0.63905624 1331 Karp_01369 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.497 52.842 2 0.0060635 18423 20181213_JW_Orientia_Karp_3_1 104.79 49.246 94984000 21158000 24630000 26830000 7954800 7624500 5564700 917580 303880 332 1331 300 2006;2007;2008;2009;2010;2011;2012;2013 1294;1295 1294 2 AIDIGNNNPDLVR Unmodified 1409.7263 0.72629134 1289 Karp_01161 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.526 48.871 2 5.6707E-05 17093 20181213_JW_Orientia_Karp_2_3 153.34 106.92 176550000 37411000 54642000 25012000 21115000 10823000 16225000 315910 11003000 333 1289 301 2014;2015;2016;2017;2018;2019;2020;2021 1296;1297;1298;1299;1300;1301 1300 6 AIDIGNNNPDLVR Deamidation (NQ) 1410.7103 0.71030693 1289 Karp_01161 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.788 52.09 2 0.0040552 18895 20181213_JW_Orientia_Karp_2_3 124.12 64.774 72601000 19062000 14890000 18059000 7378400 5552000 6540500 0 1118300 334 1289 301 2022;2023;2024;2025;2026;2027;2028 1302;1303;1304;1305 1305 703;704;705 4 AIDIILR Unmodified 812.51199 0.51198846 227 A8KA84;A0A024RBQ5;Q9Y6K5 OAS3 2'-5'-oligoadenylate synthase 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1 56.331 56.619 2 0.0094639 22361 20181213_JW_Orientia_Karp_1_3 148.21 19.39 291540000 121410000 24323000 72763000 3629500 15190000 54007000 0 211560 335 227 302 2029;2030;2031;2032;2033;2034;2035;2036 1306;1307;1308;1309;1310;1311;1312 1308 7 AIDLFTDAIK Unmodified 1105.6019 0.60192568 676 B4E0U6;P50502;Q3KNR6;Q1XBU6;B7ZA40;Q0IJ56;Q8NFI4;H7C3I1;F6VDH7;Q8IZP2;D6W507 ST13;ST13P5;ST13P4;hCG_1990625 Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.042 63.301 2 2.8983E-06 24764 20181213_JW_Orientia_Karp_2_3 177.3 81.49 97616000 22782000 20262000 21121000 775120 18969000 8203600 0 5503700 336 676 303 2037;2038;2039;2040;2041;2042;2043 1313;1314;1315;1316;1317;1318;1319;1320 1319 8 AIDTTQLFSLPK Unmodified 1332.7289 0.7289171 1818 Q6IB91;Q16822;H0YML5;B4DW73 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 65.434 65.678 2 0.00064694 28446 20181213_JW_Orientia_Karp_1_3 157.68 93.638 46322000 13881000 13609000 10135000 295950 0 1520400 5533400 1347500 337 1818 304 2044;2045;2046;2047;2048;2049;2050 1321;1322 1321 2 AIDYVNNQNK Unmodified 1177.5728 0.57275081 1365 Karp_01875 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 29.889 30.072 2 0.0001578 7875 20181213_JW_Orientia_Karp_1_3 146.69 85.015 9045800 3189600 3051300 2804900 0 0 0 0 0 338 1365 305 2051;2052;2053 1323;1324;1325 1325 3 AIEGIFNVNVIK Unmodified 1315.75 0.7499869 1240 Karp_00907 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 64.963 65.093 2 6.1783E-23 28465 20181213_JW_Orientia_Karp_1_2 233.09 160.84 176520000 70957000 29296000 50950000 0 14077000 11242000 0 0 339 1240 306 2054;2055;2056;2057;2058;2059;2060 1326;1327;1328;1329;1330;1331 1326 6 AIEHFDLAIK Unmodified 1155.6288 0.62880913 1323 Karp_01308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 47.762 47.762 3 0.0038496 17665 20181213_JW_Orientia_Karp_1_1 92.538 34.68 15252000 15252000 0 0 0 0 0 0 0 340 1323 307 2061;2062;2063 1332;1333;1334 1332 3 AIEINPDSAQPYK Unmodified 1444.7198 0.71980898 676 B4E0U6;P50502;Q3KNR6;Q1XBU6;B7ZA40;Q0IJ56;Q8NFI4;H7C3I1;F6VDH7;Q8IZP2 ST13;ST13P5;ST13P4 Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.064 46.349 2 6.1893E-05 14664 20181213_JW_Orientia_Karp_3_2 168.85 117.32 211480000 58439000 39878000 0 41040000 33826000 23532000 0 14770000 341 676 308 2064;2065;2066;2067;2068;2069 1335;1336;1337;1338;1339;1340 1340 6 AIELFQR Unmodified 875.4865 0.48650199 1495 Q5T765;O14879;B4DLS7 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 48.501 48.751 2 0.012366 17661 20181213_JW_Orientia_Karp_1_3 128.86 18.524 76558000 23047000 25119000 15050000 7699100 2145200 3497300 0 0 342 1495 309 2070;2071;2072;2073;2074;2075 1341;1342;1343;1344 1343 4 AIENFNLAIK Unmodified 1131.6288 0.62880913 1186 Karp_02088;Karp_00690 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.649 54.965 2 2.6036E-12 22496 20181213_JW_Orientia_Karp_1_1 218.55 114.71 396980000 47241000 107140000 107790000 34177000 41982000 58177000 0 473410 343 1186 310 2076;2077;2078;2079;2080;2081;2082 1345;1346;1347;1348;1349;1350;1351 1345 7 AIENFNLAIK Deamidation (NQ) 1132.6128 0.61282471 1186 Karp_02088;Karp_00690 yes no 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 56.609 56.876 2 1.7224E-05 23222 20181213_JW_Orientia_Karp_1_2 164.46 10.444 81045000 10373000 21167000 19398000 10334000 6747100 13026000 0 0 344 1186 310 2083;2084;2085;2086;2087;2088 1352;1353;1354;1355;1356 1353 595 4 AIENGHDINIVGFGSFCVR Deamidation (NQ) 2105 2.3360099E-05 1442 Karp_02417 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 1 1 2 66.398 66.637 3 1.6287E-05 29305 20181213_JW_Orientia_Karp_1_2 147.37 97.81 284850000 88052000 38428000 46558000 6523600 15185000 13481000 7285000 69333000 345 1442 311 2089;2090;2091;2092;2093;2094;2095;2096;2097;2098;2099;2100 1357;1358;1359;1360;1361;1362 1358 956;957 6 AIENYDLAIK Unmodified 1148.6077 0.60773933 1340;1186 Karp_02088;Karp_00690;Karp_01512 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.218 49.519 2 1.8003E-08 17422 20181213_JW_Orientia_Karp_2_3 198.61 0 382410000 33310000 82317000 73052000 73499000 46453000 53928000 0 19852000 346 1186;1340 312 2101;2102;2103;2104;2105;2106;2107 1363;1364;1365;1366;1367;1368;1369;1370;1371 1368 9 AIESMEQQLSELK Unmodified 1504.7443 0.74430917 1589 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS 1 54.968 54.968 2 0.010026 22465 20181213_JW_Orientia_Karp_1_1 111.94 53.26 0 0 0 0 0 0 0 0 0 347 1589 313 2108 1372 1372 1 AIFLADGNVFTTGFSR Unmodified 1714.8679 0.8678702 225 B7Z9V0;B4E3S0;B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin;Coronin-1C yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 72.016 72.138 2 1.3315E-13 33042 20181213_JW_Orientia_Karp_1_2 203.74 156.76 74778000 23101000 21212000 20489000 0 0 0 7509900 2466300 348 225 314 2109;2110;2111;2112;2113 1373;1374;1375 1373 3 AIGAVPLIQGEYMIPCEK Oxidation (M) 2004.006 0.0060199404 1009 H7C469;V9HWI3;P07339;H7C1V0 HEL-S-130P;CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 0 0 1 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 64.652 64.904 2 0.010364 25687 20181213_JW_Orientia_Karp_2_1 88.087 57.214 29108000 10710000 0 0 1035600 4566500 5567300 5607500 1621500 349 1009 315 2114;2115;2116;2117;2118;2119 1376;1377 1376 556 2 AIGGGLSSVGGGSSTIK Unmodified 1446.7678 0.7678218 341;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.761 43.082 2 1.5025E-31 13857 20181213_JW_Orientia_Karp_3_1 231.74 168.32 165170000 27612000 24822000 13595000 14122000 8110300 3968600 58112000 14824000 + 350 341;805 316 2120;2121;2122;2123;2124;2125;2126;2127 1378;1379;1380;1381;1382;1383;1384;1385 1384 8 AIGLSYDWSR Unmodified 1166.572 0.57202253 1423 Karp_02309 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.813 56.08 2 0.0021688 22760 20181213_JW_Orientia_Karp_1_2 114.51 74.446 76220000 36778000 10243000 13017000 3084000 4111700 8985300 0 0 351 1423 317 2128;2129;2130;2131;2132;2133 1386;1387;1388 1387 3 AIGVLTSGGDAQGMNAAVR Unmodified 1786.8996 0.89958103 1760;1607 Q01813;P17858 PFKP;PFKL ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, liver type no no 0 0 0 0 By matching By MS/MS By matching 1 1 1 50.988 51.388 2 0.0018379 19592 20181213_JW_Orientia_Karp_1_3 103.83 53.9 19996000 0 8335700 8037900 0 0 0 3622300 0 352 1760;1607 318 2134;2135;2136 1389 1389 1 AIGYSDDMQK Oxidation (M) 1142.4914 0.49138895 1109 Karp_00291 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 27.607 27.897 2 0.03286 6578 20181213_JW_Orientia_Karp_3_1 72.643 36.763 15284000 3605600 3214800 5701600 0 0 989430 1772300 0 353 1109 319 2137;2138;2139;2140;2141 1390;1391;1392 1392 3 AIHHFIEGVK Unmodified 1149.6295 0.62947783 639 Q05DN2;B4DTZ5;Q8IZ03;P09913 IFIT2 Interferon-induced protein with tetratricopeptide repeats 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 27.235 27.556 3 0.00028532 6803 20181213_JW_Orientia_Karp_1_2 128.86 90.107 15384000 4940800 5029300 3544900 958450 0 0 0 910160 354 639 320 2142;2143;2144;2145;2146 1393;1394;1395;1396 1394 4 AIIIFVPVPQLK Unmodified 1336.8482 0.84824438 703 B5MCP9;P62081 RPS7 40S ribosomal protein S7 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 73.864 73.888 2 0.0027572 34255 20181213_JW_Orientia_Karp_1_1 117.04 90.363 45485000 21135000 12416000 8745300 0 0 0 3189400 0 355 703 321 2147;2148;2149;2150 1397;1398 1397 2 AIIIIGEIGGSAEEEAADFLK Unmodified 2145.1205 0.12051565 1120 Karp_00318 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 1 1 1 2 74.482 74.509 2;3 1.701E-48 27702 20181213_JW_Orientia_Karp_3_1 249.41 206.57 130510000 30664000 30194000 43597000 587570 8591200 5799200 11074000 0 356 1120 322 2151;2152;2153;2154;2155;2156;2157;2158;2159 1399;1400;1401;1402;1403 1403 5 AIINQSIK Unmodified 885.52837 0.5283668 1452 Karp_02533 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.848 35.207 2 0.001532 9959 20181213_JW_Orientia_Karp_2_3 169.06 67.85 388390000 135120000 0 102390000 11901000 46250000 15941000 47582000 29204000 357 1452 323 2160;2161;2162;2163;2164;2165;2166;2167 1404;1405;1406;1407;1408;1409;1410;1411 1409 8 AIIPGGSSVPLIPK Unmodified 1347.8126 0.81258715 1409 Karp_02226 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 61.471 61.758 2 0.0024766 26160 20181213_JW_Orientia_Karp_1_3 121.36 63.575 212710000 75686000 36081000 45775000 0 19870000 21669000 2836000 10795000 358 1409 324 2168;2169;2170;2171;2172;2173;2174 1412;1413;1414;1415;1416;1417 1414 6 AILAEEYSNIGSSFLR Unmodified 1768.8996 0.89956426 1447 Karp_02466 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.267 67.439 2 9.9206E-38 26186 20181213_JW_Orientia_Karp_3_2 248.67 184.44 71576000 30019000 14318000 0 0 9400200 6651000 0 11188000 359 1447 325 2175;2176;2177;2178;2179 1418;1419;1420;1421;1422 1422 5 AILLYFK Unmodified 866.52658 0.52657589 1192 Karp_00723 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.131 59.281 2 0.013656 25316 20181213_JW_Orientia_Karp_1_1 114.67 69.946 29301000 8264900 0 11482000 0 0 9553600 0 0 360 1192 326 2180;2181;2182;2183;2184;2185 1423;1424;1425;1426;1427;1428 1423 6 AILPGSTLGVGAAINITK Unmodified 1694.9931 0.99307071 1069 Karp_00038 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 65.929 66.122 2 2.6625E-08 28808 20181213_JW_Orientia_Karp_1_3 164.7 133.55 85081000 20073000 20701000 20121000 3474100 9240900 5607700 5863800 0 361 1069 327 2186;2187;2188;2189;2190;2191;2192;2193 1429;1430;1431;1432;1433;1434;1435 1431 7 AILQFYPK Unmodified 978.55385 0.55385327 1020 I3UJJ7;P12821-2;P12821;F6X3S4;B4DXK6;D3DU13;L7MUH0;I6L9B3;P12821-4;P12821-3;J3KTB8 ACE Angiotensin-converting enzyme;Angiotensin-converting enzyme, soluble form yes no 0 0 0 0 By MS/MS By MS/MS 1 1 53.66 53.66 2 0.0063624 21685 20181213_JW_Orientia_Karp_1_1 115.46 76.206 5224100 5224100 0 0 0 0 0 0 0 362 1020 328 2194;2195 1436;1437 1436 2 AILQSANLTAADAR Unmodified 1413.7576 0.75759147 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.89 47.21 2 1.6326E-11 16985 20181213_JW_Orientia_Karp_1_2 213.99 107.79 181510000 55462000 47044000 40938000 10960000 5436700 10635000 2168500 8866500 363 1162 329 2196;2197;2198;2199;2200;2201;2202;2203 1438;1439;1440;1441;1442;1443;1444;1445 1439 8 AILVDLEPGTMDSVR Oxidation (M) 1630.8236 0.82362212 1566;602 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;B4DMJ5 TUBB Tubulin beta chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 59.021 59.314 2 3.481E-37 24866 20181213_JW_Orientia_Karp_1_2 241.31 178.1 1209400000 327680000 296700000 314670000 70781000 110740000 85067000 3745900 0 364 1566;602 330 2204;2205;2206;2207;2208;2209;2210;2211 1446;1447;1448;1449;1450;1451;1452;1453;1454;1455 1447 373 10 AILVDLEPGTMDSVR Unmodified 1614.8287 0.8287075 1566;602 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;B4DMJ5 TUBB Tubulin beta chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 2 64.547 64.748 2 2.9884E-19 27883 20181213_JW_Orientia_Karp_1_3 228.93 146.91 793610000 271860000 260520000 183600000 10415000 34069000 31292000 0 1858200 365 1566;602 330 2212;2213;2214;2215;2216;2217;2218;2219 1456;1457;1458;1459;1460;1461 1458 6 AIMAQLPQEQK Oxidation (M) 1271.6544 0.65437195 684 G3XAM7;B4E2G8;P35221;P35221-2;B4DKT9;B4DU00;P35221-3;B3KSR8 CTNNA1 Catenin alpha-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 37.492 37.814 2 0.00029086 12160 20181213_JW_Orientia_Karp_1_1 147.75 56.685 58036000 16565000 10760000 15038000 1996500 1592000 789580 11295000 0 366 684 331 2220;2221;2222;2223;2224;2225;2226 1462;1463;1464;1465 1462 422 4 AIMEANLGVSIISDDNQIIR Oxidation (M) 2187.1205 0.12053243 1456 Karp_02593 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 67.124 67.274 2 1.4841E-37 29689 20181213_JW_Orientia_Karp_1_2 231.41 173.31 34742000 9018000 7844900 7678100 3770700 4011400 2418800 0 0 367 1456 332 2227;2228;2229;2230;2231;2232;2233 1466;1467;1468;1469 1466 1068 4 AINHGMTK Unmodified 870.43817 0.43817159 1089 Karp_00229 yes yes 0 0 0 0 By MS/MS 1 13.635 13.635 2 0.01373 2212 20181213_JW_Orientia_Karp_1_1 116.88 60.629 0 0 0 0 0 0 0 0 0 368 1089 333 2234 1470 1470 1 AINHIFDIQNQSLLK Unmodified 1752.9523 0.95226853 1143 Karp_00458 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 56.902 57.112 3 0.0042427 23180 20181213_JW_Orientia_Karp_1_3 142.39 84.967 42332000 5753100 8961800 13623000 0 6631500 7362600 0 0 369 1143 334 2235;2236;2237;2238;2239 1471;1472;1473;1474 1472 4 AINKLDQLEK Unmodified 1170.6608 0.66083754 1347 Karp_01523 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 32.382 32.734 3 0.030663 9233 20181213_JW_Orientia_Karp_1_2 78.513 33.532 26706000 14638000 7384900 0 847900 3347700 0 0 488040 370 1347 335 2240;2241;2242;2243;2244 1475 1475 1 AINLPDQYFK Unmodified 1207.6237 0.62372375 1443 Karp_02418 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.237 56.559 2 0.00056131 22740 20181213_JW_Orientia_Karp_1_3 133.13 100.14 734190000 232670000 105570000 137460000 118650000 56541000 82055000 1248100 0 371 1443 336 2245;2246;2247;2248;2249;2250;2251 1476;1477;1478;1479;1480;1481 1478 6 AINQQTGAFVEISR Unmodified 1532.7947 0.79470526 1930 Q92945;M0R3J3 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.774 49.12 2 1.4616E-34 18132 20181213_JW_Orientia_Karp_1_2 244.18 158.89 146250000 25386000 38331000 26213000 12933000 11248000 20191000 547040 11397000 372 1930 337 2252;2253;2254;2255;2256;2257;2258;2259 1482;1483;1484;1485;1486;1487;1488;1489 1483 8 AINSYSQQSK Unmodified 1124.5462 0.54620171 1431 Karp_02388 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 21.582 21.923 2 0.0087663 4381 20181213_JW_Orientia_Karp_1_3 102.06 63.901 3611500 0 1028300 1837800 0 211740 333790 199940 0 373 1431 338 2260;2261;2262;2263;2264 1490;1491 1490 2 AIPDLTAPVAAVQAAVSNLVR Unmodified 2075.1739 0.17388863 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B4DTM7 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 2 1 2 2 77.254 77.244 2;3 0.011262 36150 20181213_JW_Orientia_Karp_1_3 101.08 86.2 61302000 17563000 8221300 16803000 709380 3252200 0 14753000 0 374 19 339 2265;2266;2267;2268;2269;2270;2271;2272;2273;2274 1492;1493 1493 2 AIPQLQGYLR Unmodified 1157.6557 0.65569258 226 Q8TBK5;Q8N5Z7;B2R4K7;A0A024RBK3;Q9HBB3;Q02878 RPL6 60S ribosomal protein L6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.355 54.671 2 0.0054838 21880 20181213_JW_Orientia_Karp_1_2 101.64 54.069 381490000 177750000 75417000 51617000 24328000 25398000 24852000 0 2132300 375 226 340 2275;2276;2277;2278;2279;2280;2281 1494;1495;1496;1497;1498;1499;1500 1495 7 AIQAYGMK Oxidation (M) 896.44259 0.44258826 1807 Q15417-2;Q15417;E9PDU6;Q9BWY6 CNN3 Calponin-3;Calponin yes no 0 0 1 0 By MS/MS 1 24.944 25.194 2 0.03473 5835 20181213_JW_Orientia_Karp_1_2 76.035 25.915 4889400 0 4889400 0 0 0 0 0 0 376 1807 341 2282 1501 1501 1 AIQEAAESAGGR Unmodified 1158.5629 0.56291441 1360 Karp_01811 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 26.398 26.735 2 0.0016831 6513 20181213_JW_Orientia_Karp_1_2 131.43 73.473 44426000 12636000 18152000 0 6018300 0 0 7619800 0 377 1360 342 2283;2284;2285;2286;2287 1502;1503;1504;1505;1506 1503 5 AIQHEVDHLDGILLVDYLSNLK Unmodified 2504.3275 0.32748873 1113 Karp_00296 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 71.49 71.556 4 0.00194 32609 20181213_JW_Orientia_Karp_1_2 94.188 66.758 270120000 52896000 29481000 22201000 0 61486000 27545000 76515000 0 378 1113 343 2288;2289;2290;2291;2292;2293 1507;1508;1509;1510;1511;1512;1513 1508 7 AIQHEVDHLDGILLVDYLSNLKK Unmodified 2632.4225 0.42245175 1113 Karp_00296 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 64.544 64.721 4 1.308E-14 25166 20181213_JW_Orientia_Karp_2_2 171.42 127.31 166080000 43268000 40255000 24283000 0 28177000 26055000 0 4038300 379 1113 344 2294;2295;2296;2297;2298;2299 1514;1515;1516;1517;1518;1519 1517 6 AIQLVIPSK Unmodified 967.60662 0.60661712 1127 Karp_00330 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 51.922 52.172 2 0.0050402 18891 20181213_JW_Orientia_Karp_2_3 104.01 18.802 30290000 9632500 0 11188000 5164300 0 4305300 0 0 380 1127 345 2300;2301;2302;2303 1520 1520 1 AIQYLEAVIK Unmodified 1146.6649 0.66486028 1301 Karp_01234 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 57.873 58.123 2 0.0069794 24586 20181213_JW_Orientia_Karp_1_1 94.309 46.026 48089000 14642000 10286000 16226000 1587600 0 5348100 0 0 381 1301 346 2304;2305;2306;2307;2308 1521;1522;1523 1521 3 AISNQTVTAK Unmodified 1031.5611 0.56112349 1113 Karp_00296 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 23.968 24.3 2 3.2815E-06 5416 20181213_JW_Orientia_Karp_1_3 176.33 96.875 85852000 9405500 35135000 9735800 6767700 6273800 4269600 8451900 5812900 382 1113 347 2309;2310;2311;2312;2313;2314;2315;2316 1524;1525;1526;1527;1528;1529;1530;1531 1526 8 AITEVEFLGTILDADIASK Unmodified 2005.0619 0.06193814 1356 Karp_01685 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 75.747 75.798 2 2.9834E-13 28439 20181213_JW_Orientia_Karp_3_1 193.51 137.78 16501000 0 0 7762300 2170400 0 0 5921300 647480 383 1356 348 2317;2318;2319;2320 1532;1533;1534 1534 3 AITGASLADIMAK Oxidation (M) 1276.6697 0.66968766 774 C9JXB8;C9JNW5;V9HW01;P83731 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.018 49.363 2 0.0012823 18765 20181213_JW_Orientia_Karp_1_1 131.42 74.137 112790000 29549000 27320000 29199000 8631800 3112900 6370600 108500 8503000 384 774 349 2321;2322;2323;2324;2325;2326;2327;2328 1535;1536 1535 448 2 AITGASLADIMAK Unmodified 1260.6748 0.67477304 774 C9JXB8;C9JNW5;V9HW01;P83731 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 58.619 58.912 2 1.9291E-17 24652 20181213_JW_Orientia_Karp_1_2 220.82 155.35 217360000 31768000 103530000 61734000 5125600 6358700 7816200 1032800 0 385 774 349 2329;2330;2331;2332;2333;2334;2335 1537;1538;1539;1540;1541;1542;1543;1544 1539 8 AITIAGIPQSIIECVK Unmodified 1711.9542 0.95424237 594 B4DLC0;Q15366-6;Q15366-3;Q15366;Q15366-2;F8VXH9;B4DRD7;H3BRU6;F8VZX2;Q15366-7;B4DXP5;Q15366-4;Q15366-5;F8VRH0 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 71.026 71.155 2 0.0043924 32626 20181213_JW_Orientia_Karp_1_1 103.97 40.567 30889000 8524300 7302800 4942600 425570 2095700 0 5883100 1714800 386 594 350 2336;2337;2338;2339;2340;2341;2342 1545;1546 1545 2 AITIAGVPQSVTECVK Unmodified 1671.8866 0.88655673 1806 Q53SS8;Q15365 PCBP1 Poly(rC)-binding protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 56.155 56.513 2 1.6945E-05 23476 20181213_JW_Orientia_Karp_1_1 177.42 104.49 97328000 32133000 26422000 17149000 9012900 4483900 3000700 4586800 539490 387 1806 351 2343;2344;2345;2346;2347;2348;2349;2350 1547;1548 1547 2 AITIASQTNCPLYVTK Unmodified 1778.9237 0.92367052 1795 Q6DEN2;Q14195-2;Q8IXW6;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 52.361 52.962 2 3.0015E-06 18541 20181213_JW_Orientia_Karp_3_1 166.24 113.45 4573000 0 0 0 1630300 0 0 2942600 0 388 1795 352 2351;2352 1549;1550 1550 1 AIVAIENPADVSVISSR Unmodified 1739.9418 0.94176342 71;150 C9J9K3;A0A024R2P0;P08865;Q96RS2;A6NE09;A0A024R7P5 RPSA;RPSAP58;LOC388524 40S ribosomal protein SA no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 62.457 62.7 2 8.7673E-42 27279 20181213_JW_Orientia_Karp_1_1 247.11 208.15 104180000 21247000 17217000 41082000 0 11020000 9197000 0 4419400 389 71;150 353 2353;2354;2355;2356;2357;2358 1551;1552;1553;1554;1555;1556 1551 6 AIVCHLK Unmodified 839.46874 0.46874343 1182 Karp_00659 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 22.649 22.913 2 0.018164 4520 20181213_JW_Orientia_Karp_2_1 105.42 62.352 71089000 10602000 22267000 7900800 9101800 5214000 2990600 13013000 0 390 1182 354 2359;2360;2361;2362;2363;2364;2365;2366 1557;1558;1559;1560;1561 1558 5 AIVEGIVYEK Unmodified 1119.6176 0.61757574 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.263 48.608 2 0.0026459 18221 20181213_JW_Orientia_Karp_1_1 112.75 64.465 601890000 140090000 186250000 95684000 71351000 24491000 34210000 65505 49752000 391 1262 355 2367;2368;2369;2370;2371;2372;2373;2374 1562;1563;1564;1565;1566;1567;1568 1562 7 AIVWSNEDLGAK Unmodified 1301.6616 0.66156582 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 50.328 50.635 2 2.2458E-16 17094 20181213_JW_Orientia_Karp_3_1 211.86 123.49 766690000 226740000 152940000 143250000 98070000 41111000 77571000 27007000 0 392 1094 356 2375;2376;2377;2378;2379;2380;2381 1569;1570;1571 1571 3 AIYDIERPDLITYEPFYTSGYDDK Unmodified 2883.3491 0.34907162 525 J3QSX6;Q5JVV3;B3KSG3;H0Y3K7;F8W8M4;Q5T6N4;O14639-4;O14639-3;O14639-5;Q5T6N2;O14639-2;B3KVH2;O14639;B4DQA3;B7Z4H1;H0Y7N6;F6XFR5 ABLIM1 Actin-binding LIM protein 1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 71.309 71.378 3 0.006013 26008 20181213_JW_Orientia_Karp_3_1 111.99 68.791 77532000 35745000 0 14667000 4748800 0 9935400 12436000 0 393 525 357 2382;2383;2384;2385;2386 1572;1573;1574;1575 1575 4 AIYHDLEQSIR Unmodified 1343.6834 0.68336389 103 A0A024R4X1;Q6FIA3;Q9UNF0-2;Q9UNF0 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 41.134 41.4 3 0.0012423 13513 20181213_JW_Orientia_Karp_1_3 112.13 59.847 8284800 0 0 5471200 1232600 1581000 0 0 0 394 103 358 2387;2388;2389;2390 1576;1577;1578;1579 1577 4 AKDPFAHLPK Unmodified 1122.6186 0.61857879 1634 Q53YD7;P26641;P26641-2;B4DUP0 EEF1G Elongation factor 1-gamma yes no 0 0 0 1 By MS/MS By matching 1 1 31.597 31.898 3 0.038205 8756 20181213_JW_Orientia_Karp_1_2 96.171 39.256 6073200 0 5990500 0 0 82659 0 0 0 395 1634 359 2391;2392 1580 1580 1 AKEEIELLYHAQQILR Unmodified 1953.0684 0.068360922 1101 Karp_00270 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 55.37 55.663 3;4 0.0021794 20766 20181213_JW_Orientia_Karp_2_1 116.86 86.69 208970000 76491000 30864000 17667000 12903000 45883000 24477000 0 687160 396 1101 360 2393;2394;2395;2396;2397;2398;2399;2400;2401;2402;2403;2404;2405 1581;1582;1583;1584;1585;1586;1587;1588 1585 8 AKFEELNMDLFR Oxidation (M) 1527.7392 0.73916421 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS 1 1 1 50.946 51.263 3 0.0016067 18406 20181213_JW_Orientia_Karp_2_3 136.53 87.45 19897000 0 0 0 10341000 4849200 4706800 0 0 397 1585 361 2406;2407;2408 1589;1590;1591 1591 1203 3 AKHDELTYF Unmodified 1122.5346 0.53457439 1547 Q76LA1;P04080 CSTB Cystatin-B yes no 0 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 40.027 40.387 2 0.039955 12551 20181213_JW_Orientia_Karp_3_1 121.09 59.413 99218000 10354000 15447000 12215000 18366000 0 0 38182000 4653600 398 1547 362 2409;2410;2411;2412;2413;2414 1592 1592 1 AKLESLVGDLITK Unmodified 1385.813 0.81298108 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 56.351 56.67 2;3 1.8313E-23 23217 20181213_JW_Orientia_Karp_1_2 231.66 172.59 665030000 82930000 162830000 114030000 59552000 111850000 118350000 6737600 8759000 399 1074 363 2415;2416;2417;2418;2419;2420;2421;2422;2423;2424;2425;2426;2427;2428 1593;1594;1595;1596;1597;1598;1599 1594 7 AKPPPGGGEQEPPPPPAPQDVEMK Oxidation (M) 2465.1897 0.18967462 619 F5H8K4;B4DPM7;Q96N86;Q6IBN0;O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 37.43 37.58 3 0.00043462 11519 20181213_JW_Orientia_Karp_1_3 111.97 75.983 22564000 6798800 0 12681000 0 3084200 0 0 0 400 619 364 2429;2430;2431;2432 1600;1601;1602;1603;1604;1605 1602 379 6 AKPPPGGGEQEPPPPPAPQDVEMK Unmodified 2449.1948 0.19476 619 F5H8K4;B4DPM7;Q96N86;Q6IBN0;O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 41.389 41.654 3 0.01749 14189 20181213_JW_Orientia_Karp_1_1 63.536 34.41 42309000 7852200 15177000 18750000 0 0 0 0 529630 401 619 364 2433;2434;2435;2436 1606 1606 1 AKQEELEAALQR Unmodified 1384.731 0.73104237 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q96GE1 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 35.532 35.732 3 0.001855 11198 20181213_JW_Orientia_Karp_1_1 124.6 43.683 80743000 26889000 37893000 14330000 0 1631600 0 0 0 + 402 811 365 2437;2438;2439;2440;2441 1607;1608;1609;1610 1607 4 AKTEPIIVTGEVIK Unmodified 1496.8814 0.881395 1136 Karp_00448 yes yes 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 45.495 45.67 3 0.023072 15843 20181213_JW_Orientia_Karp_1_3 125.84 74.228 72126000 20776000 25985000 19631000 0 5734300 0 0 0 403 1136 366 2442;2443;2444;2445 1611 1611 1 ALAAAGYDVEK Unmodified 1106.5608 0.56078914 1605;1606;291;1763 P16402;A1L407;P22492;Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16403;Q02539 HIST1H1D;HIST1H1T;HIST1H1E;HIST1H1C;HIST1H1A Histone H1.3;Histone H1t;Histone H1.4;Histone H1.2;Histone H1.1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 38.784 39.091 2 0.002034 11347 20181213_JW_Orientia_Karp_2_2 117.7 68.942 6824900000 2330100000 2629300000 1389800000 102300000 64281000 41997000 267120000 0 404 1605;291;1606;1763 367 2446;2447;2448;2449;2450;2451;2452;2453;2454 1612;1613;1614;1615;1616;1617;1618;1619;1620 1617 9 ALAAFLK Unmodified 732.45341 0.45341094 433 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 RPS19 40S ribosomal protein S19 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 48.39 48.62 2 0.038822 16703 20181213_JW_Orientia_Karp_2_1 84.025 21.686 77352000 16062000 0 36739000 16653000 3096100 4801300 0 0 405 433 368 2455;2456;2457;2458;2459 1621 1621 1 ALAAGGVGSIVR Unmodified 1069.6244 0.62439245 1504 O15511;O15511-2 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.157 45.45 2 6.1287E-06 15757 20181213_JW_Orientia_Karp_1_3 178.55 106.67 615990000 120370000 129910000 156110000 69811000 79824000 55558000 4419600 0 406 1504 369 2460;2461;2462;2463;2464;2465;2466 1622;1623;1624;1625;1626;1627;1628 1624 7 ALAAGGYDVEK Unmodified 1092.5451 0.54513908 1604 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.109 37.399 2 0.0012343 12053 20181213_JW_Orientia_Karp_1_1 125.97 91.077 3579200000 2093600000 13256000 1199300000 0 42983000 0 230110000 0 407 1604 370 2467;2468;2469;2470;2471 1629;1630;1631;1632 1629 4 ALADYIR Unmodified 820.4443 0.44430282 1961 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.667 45.929 2 0.020582 16150 20181213_JW_Orientia_Karp_1_2 101.69 0 26686000 14723000 9489200 0 1619400 0 854180 0 0 408 1961 371 2472;2473;2474;2475;2476 1633;1634;1635 1634 3 ALAEAQAQLQESSQK 4 Deamidation (NQ) 1604.7417 0.74172621 164 Q05BU1;A0A024R8D6;Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 yes no 0 4 0 0 By MS/MS 1 58.407 58.855 2 0.041681 22496 20181213_JW_Orientia_Karp_2_1 46.844 10.51 0 0 0 0 0 0 0 0 0 409 164 372 2477 1636 1636 1310;1311;1312;1313 1 ALALGALQNIR Unmodified 1138.6822 0.68224168 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y5N9 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 55.767 56.03 2 0.00060404 22820 20181213_JW_Orientia_Karp_1_2 136.8 105.72 14633000 0 3989100 6604000 0 2043200 1996200 0 0 410 852 373 2478;2479;2480;2481 1637;1638;1639 1637 3 ALANSLACQGK Unmodified 1131.5706 0.57064232 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BR68 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 32.286 32.666 2 0.00052706 9672 20181213_JW_Orientia_Karp_1_1 140.11 87.63 27912000 12611000 4783100 0 1734100 2437300 687420 3853300 1805400 411 1546 374 2482;2483;2484;2485;2486;2487;2488 1640;1641 1640 2 ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEK Unmodified 3807.9214 0.92138569 125 Q6ICQ4;A0A024R608;P05386;Q7Z612 RPLP1 60S acidic ribosomal protein P1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 70.683 70.783 3;4 8.8338E-05 25588 20181213_JW_Orientia_Karp_3_1 59.325 45.376 360730000 37613000 32847000 56958000 503790 40805000 35186000 156820000 0 412 125 375 2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500 1642;1643;1644;1645;1646;1647 1647 6 ALAPTWEQLALGLEHSETVK Unmodified 2192.1477 0.14773345 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 67.628 67.798 3 0.042336 29775 20181213_JW_Orientia_Karp_1_3 61.015 48.923 356070000 158490000 62413000 75334000 384310 59451000 0 0 0 413 25 376 2501;2502;2503;2504;2505 1648 1648 1 ALAQYFIK Unmodified 952.5382 0.53820321 1059 Karp_00003 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.109 51.416 2 0.0041791 19730 20181213_JW_Orientia_Karp_1_2 143.02 79.54 267580000 42286000 49480000 73273000 53656000 23196000 20050000 5637000 0 414 1059 377 2506;2507;2508;2509;2510;2511;2512 1649;1650;1651;1652;1653;1654;1655 1650 7 ALASPEQLAQLPSSGVPR Unmodified 1819.9792 0.97921156 2012 Q9Y3Q8;H7BZ77;Q9Y3Q8-2 TSC22D4 TSC22 domain family protein 4 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 59.485 59.748 2 0.00042347 24856 20181213_JW_Orientia_Karp_1_3 145.7 112.7 16588000 0 4909200 6988200 0 3078800 1612000 0 0 415 2012 378 2513;2514;2515;2516 1656 1656 1 ALASQLQDSLK Unmodified 1172.6401 0.6401021 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 45.257 45.709 2 0.001254 15883 20181213_JW_Orientia_Karp_1_3 125.68 60.525 100380000 0 0 86240000 6029600 0 0 3670300 4437900 416 19 379 2517;2518;2519;2520 1657;1658;1659;1660 1657 4 ALAVGGLGSIIR Unmodified 1125.687 0.68699271 163 B3KPC7;A0A024R897;Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.051 60.344 2 1.5142E-07 23221 20181213_JW_Orientia_Karp_2_1 188.87 120.86 153060000 32662000 17348000 45201000 8199700 23075000 26159000 418270 0 417 163 380 2521;2522;2523;2524;2525;2526;2527 1661;1662;1663;1664;1665;1666;1667;1668 1664 8 ALCNTHQFLK Unmodified 1230.6179 0.61792687 1126 Karp_00329 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 1 32.175 32.556 2;3 0.0040367 8425 20181213_JW_Orientia_Karp_2_1 94.692 55.886 260420000 9910600 110750000 52370000 2430500 13212000 0 59978000 11770000 418 1126 381 2528;2529;2530;2531;2532;2533;2534;2535;2536;2537 1669;1670;1671;1672;1673;1674;1675 1671 7 ALDDFVLGSAR Unmodified 1162.5982 0.59823728 10 A6NP52;B3KN29;A0A024QZ22;O60831 PRAF2 PRA1 family protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 59.555 59.985 2 0.001403 25311 20181213_JW_Orientia_Karp_1_2 123.51 50.585 6365100 0 5460000 0 0 0 0 0 905100 419 10 382 2538;2539 1676;1677 1676 2 ALDEVTSSQPPPLPPPPPPAQETQEPSPILDSEETR Unmodified 3845.8847 0.88470864 1815 Q16643;Q16643-3;Q16643-2;B7Z2Z0;D6R9Q9;B3KSQ7 DBN1 Drebrin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 68.092 68.328 3;4 0.0090597 30155 20181213_JW_Orientia_Karp_1_3 45.536 23.771 57494000 9955300 6867600 28923000 3073900 0 0 3037100 5636700 420 1815 383 2540;2541;2542;2543;2544;2545;2546 1678;1679;1680;1681 1680 4 ALDFIASK Unmodified 863.47527 0.4752686 1509;133 O43707;B4E337;B4DSX0;G3V2E8;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;Q86TX4;G3V2N5;B4DRP5;G3V2W4;B2R8Y4;Q08043;B4DZQ2;G3V2X9;G3V5M4 ACTN4;ACTN1;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-3 no no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 48.077 48.347 2 0.034292 17431 20181213_JW_Orientia_Karp_1_3 80.219 15.461 64527000 26819000 11741000 21444000 2955100 0 1569200 0 0 421 1509;133 384 2547;2548;2549;2550;2551 1682 1682 1 ALDGAFTEENR Unmodified 1221.5626 0.56258006 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 40.827 41.127 2 0.00034985 13491 20181213_JW_Orientia_Karp_1_2 147.74 100.9 36822000 17321000 7236700 8835600 0 0 0 3428800 0 422 2016 385 2552;2553;2554;2555;2556 1683;1684;1685;1686 1684 4 ALDLESLSLLGFVYK Unmodified 1666.9182 0.91817444 1578 P09914-2;P09914 IFIT1 Interferon-induced protein with tetratricopeptide repeats 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 76.678 76.698 2 0.0019594 35754 20181213_JW_Orientia_Karp_1_3 124.39 89.69 16755000 6660400 4246900 4831900 618920 0 0 0 397330 423 1578 386 2557;2558;2559;2560;2561 1687 1687 1 ALDLFSDNAPPPELLEIINEDIAK Unmodified 2636.3585 0.35851409 1802 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 77.695 77.67 3 1.4846E-06 36635 20181213_JW_Orientia_Karp_1_1 131.33 96.135 71640000 27430000 0 23008000 2968400 0 4828500 12771000 633720 424 1802 387 2562;2563;2564;2565;2566;2567 1688;1689;1690;1691 1688 4 ALDTMNFDVIK Unmodified 1265.6326 0.63257388 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E7ERJ7;B4DQX0;E5RGH3;B1ANR0;Q6IQ30;Q13310-2;Q13310;Q13310-3;E5RH24;E5RJB9;H0YBN4;B1ANR1;H0YEQ8 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 61.379 61.579 2 5.1902E-07 26406 20181213_JW_Orientia_Karp_1_2 182.16 111.6 35647000 14998000 8332700 8830500 0 0 3485800 0 0 425 179 388 2568;2569;2570;2571;2572 1692;1693;1694;1695;1696 1693 5 ALDYYMLR Oxidation (M) 1059.5059 0.5059168 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 47.995 48.297 2 0.0069725 18054 20181213_JW_Orientia_Karp_1_1 109.01 66.725 19827000 8305100 0 5390400 2044100 1827700 0 0 2259500 426 2016 389 2573;2574;2575;2576;2577 1697 1697 1540 1 ALEAVENYDLAIK Unmodified 1447.7559 0.75586013 1323;1152 Karp_01552;Karp_00538;Karp_01308 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.966 57.311 2 1.7434E-07 23244 20181213_JW_Orientia_Karp_1_3 189.17 87.706 319400000 51576000 50239000 88049000 29742000 37517000 30497000 8850800 22929000 427 1152;1323 390 2578;2579;2580;2581;2582;2583;2584;2585 1698;1699;1700;1701;1702;1703;1704 1700 7 ALEAVFGK Unmodified 833.4647 0.46470391 1663 P38159;H0Y6E7;H3BT71;P38159-2;H3BR27;P38159-3;H3BNC1 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.158 46.348 2 0.0097168 16218 20181213_JW_Orientia_Karp_1_3 104.75 49.242 81162000 40770000 20806000 5905300 0 4653800 9027100 0 0 428 1663 391 2586;2587;2588;2589;2590;2591 1705;1706;1707;1708 1705 4 ALEDANLK Unmodified 872.46035 0.46034682 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.195 32.553 2 7.8623E-05 9125 20181213_JW_Orientia_Karp_1_2 201.49 95.073 459390000 184680000 140240000 35008000 19079000 15774000 233440 58795000 5579000 429 1074 392 2592;2593;2594;2595;2596;2597;2598;2599 1709;1710;1711;1712;1713;1714;1715 1710 7 ALEEALEAK Unmodified 972.51278 0.51277632 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;O14729;O14794;Q68D89;Q66K75 MYH10;DKFZp686D10126;MYH11 Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 38.952 39.259 2 0.00081176 12396 20181213_JW_Orientia_Karp_1_3 137.14 65.443 47231000 13746000 16113000 10976000 2116300 747290 482760 3050300 0 430 944 393 2600;2601;2602;2603;2604;2605;2606 1716;1717;1718;1719;1720;1721 1718 6 ALEEAMEQK Oxidation (M) 1063.4856 0.48557529 47 A0A024R1N1;P35579;P35579-2;Q2PS10 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.979 22.338 2 0.00020263 4663 20181213_JW_Orientia_Karp_1_2 176.6 121.88 60422000 11347000 20254000 11450000 0 3271300 2680200 8196600 3222800 431 47 394 2607;2608;2609;2610;2611;2612;2613;2614 1722;1723;1724;1725;1726;1727;1728;1729 1723 31 8 ALEEAMEQK Unmodified 1047.4907 0.49066067 47 A0A024R1N1;P35579;P35579-2;Q2PS10 MYH9 Myosin-9 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 32.085 32.268 2 0.00079556 8993 20181213_JW_Orientia_Karp_1_2 135.71 66.113 107210000 31994000 34937000 40283000 0 0 0 0 0 432 47 394 2615;2616;2617 1730;1731 1730 1 ALEEANADLEVK Unmodified 1300.6511 0.65106071 790;795;277 CON__P02533;P02533;CON__Q6IFX2;CON__P19012;P19012;B3KVF5;B4E204;CON__P08779;P08779;B4DWU0;B4E2J5;CON__P13646-1;A8K2H9;A1A4E9;B4DL17 KRT14;KRT15;KRT16;KRT13 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16 no no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 43.091 43.443 2 2.1909E-07 13779 20181213_JW_Orientia_Karp_2_2 185.99 16.788 111220000 19355000 29840000 0 24907000 19813000 0 16458000 851570 + 433 790;795;277 395 2618;2619;2620;2621;2622;2623;2624 1732;1733;1734;1735 1732 4 ALEEQNELLSAELGGLR Unmodified 1840.9531 0.95305639 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 65.042 65.257 2 1.5163E-16 28914 20181213_JW_Orientia_Karp_1_1 201.76 132.54 99889000 22377000 23993000 25702000 0 6867700 3877900 15341000 1731000 434 839 396 2625;2626;2627;2628;2629;2630;2631 1736 1736 1 ALEESNYELEGK Unmodified 1380.6409 0.64088996 798;791 CON__P02535-1;CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 39.998 40.328 2 1.0608E-22 12567 20181213_JW_Orientia_Karp_3_1 227.36 163.83 1565600000 293270000 197140000 276760000 241860000 179430000 0 326090000 51051000 + 435 791;798 397 2632;2633;2634;2635;2636;2637;2638;2639;2640 1737;1738;1739;1740;1741;1742;1743;1744;1745;1746 1745 10 ALEFEGQR Unmodified 948.46649 0.46649483 1317 Karp_01279 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 36.222 36.555 2 0.004443 11151 20181213_JW_Orientia_Karp_1_2 131.03 68.567 157380000 50311000 40742000 43196000 3916300 0 4346600 14872000 0 436 1317 398 2641;2642;2643;2644;2645;2646;2647 1747;1748;1749;1750;1751 1748 5 ALEHFTDLYDIK Unmodified 1463.7296 0.72964538 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 54.209 54.384 3 0.015403 22068 20181213_JW_Orientia_Karp_1_1 117.09 57.673 0 0 0 0 0 0 0 0 0 437 1757 399 2648;2649 1752;1753 1752 2 ALEIIPR Unmodified 810.49634 0.49633839 1832 Q6IBT3;Q53HV2;Q99832;B7Z1C9;B7Z7I4;Q99832-2;Q99832-4;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 48.506 48.78 2 0.01363 17654 20181213_JW_Orientia_Karp_1_3 114.72 37.347 23968000 6347100 9544100 6038400 2038800 0 0 0 0 438 1832 400 2650;2651;2652;2653 1754;1755 1755 2 ALELAGAK Unmodified 771.44905 0.44905385 1235 Karp_00902 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 34.201 34.534 2 0.022059 8987 20181213_JW_Orientia_Karp_3_2 108.09 19.445 12206000 0 0 6521900 1913100 3771500 0 0 0 439 1235 401 2654;2655;2656;2657 1756;1757 1757 2 ALELDPNLYR Unmodified 1202.6295 0.62953741 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 no no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 56.443 56.643 2 0.017595 22826 20181213_JW_Orientia_Karp_1_3 85.533 45.488 50561000 18903000 14388000 14874000 0 0 2395300 0 0 440 944 402 2658;2659;2660;2661 1758 1758 1 ALELTGLK Unmodified 843.50657 0.50656873 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338 NCL Nucleolin yes no 0 0 0 0 By MS/MS 1 47.343 47.494 2 0.0050395 15975 20181213_JW_Orientia_Karp_2_2 138.83 32.41 0 0 0 0 0 0 0 0 0 441 88 403 2662 1759 1759 1 ALEQQVEEMK Oxidation (M) 1219.5755 0.57545293 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 29.943 30.293 2 6.5023E-07 7939 20181213_JW_Orientia_Karp_1_3 188.87 137.68 28656000 14014000 0 5088700 2350200 1574000 0 5628700 0 442 47 404 2663;2664;2665;2666;2667;2668 1760;1761;1762;1763;1764;1765 1761 32 6 ALESGDVNTVWK Unmodified 1317.6565 0.65648044 235 A4QPB0;A0A024RC65;P46940;Q6P1N4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 48.107 48.451 2 0.0012087 17508 20181213_JW_Orientia_Karp_1_3 131.42 78.632 45173000 15557000 0 16789000 4976500 2639300 2029600 57055 3124600 443 235 405 2669;2670;2671;2672;2673;2674;2675 1766;1767 1767 2 ALEVAEYLTPVLK Unmodified 1444.8177 0.81773211 948 F8WDI0;Q9NT62-2;Q9NT62 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 69.81 69.992 2 0.00053233 25137 20181213_JW_Orientia_Karp_3_1 152.64 110.3 22854000 0 0 0 2377600 6879200 3201600 9482600 913220 444 948 406 2676;2677;2678;2679;2680 1768 1768 1 ALFHQLFTNGLLLFTNLSKDMQTYLFGHK Oxidation (M);2 Deamidation (NQ) 3414.7322 0.73223493 1354 Karp_01636 yes yes 0 2 1 1 By MS/MS By matching By matching 1 1 1 74.091 74.107 3 0.018208 34311 20181213_JW_Orientia_Karp_1_1 58.272 19.735 501680000 229440000 0 261620000 0 10610000 0 0 0 445 1354 407 2681;2682;2683 1769 1769 812;1844 930 1 ALFLIPR Unmodified 828.52216 0.52215921 717 E7ENQ1;G3XAA2;H7C360;V9HWH3;B7Z3V5;Q53TX8;E7EN19;E7ESS2;B7Z388;G5E948;O95819-4;O95819-2;O95819;O95819-5;O95819-3;C9J338;I3L2I2;Q9UKE5-8;Q8N4C8-5;Q9UKE5-5;Q8N4C8-2;Q9UKE5-7;Q8N4C8-3;Q9UKE5-3;Q8N4C8-4;Q9UKE5-6;Q9UKE5-2;Q8N4C8;Q9UKE5-4;Q9UKE5 MAP4K4;HEL-S-31;TNIK;MINK1 Mitogen-activated protein kinase kinase kinase kinase 4;TRAF2 and NCK-interacting protein kinase;Misshapen-like kinase 1 yes no 0 0 0 0 By matching By MS/MS 1 1 59.401 59.5 2 0.023712 24673 20181213_JW_Orientia_Karp_1_3 97.64 23.043 6318700 3375500 0 2943200 0 0 0 0 0 446 717 408 2684;2685 1770 1770 1 ALFMPLR Unmodified 846.47858 0.47857984 1285 Karp_01156 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 56.714 56.915 2 0.030676 23832 20181213_JW_Orientia_Karp_1_1 88.627 55.134 11449000 7702000 2274200 0 0 0 1472600 0 0 447 1285 409 2686;2687;2688 1771 1771 1 ALFMPLR Oxidation (M) 862.47349 0.47349446 1285 Karp_01156 yes yes 0 0 1 0 By matching By MS/MS By matching 1 1 1 49.735 49.935 2 0.036799 18667 20181213_JW_Orientia_Karp_1_2 80.999 31.64 12688000 4887100 4571000 0 0 0 3230100 0 0 448 1285 409 2689;2690;2691 1772 1772 1 ALGALAAALR Unmodified 925.5709 0.57090032 227 A8KA84;A0A024RBQ5;Q9Y6K5;F8VWK9;F8VS35 OAS3 2'-5'-oligoadenylate synthase 3 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 52.391 52.66 2 0.00026062 20645 20181213_JW_Orientia_Karp_1_2 143 80.287 25118000 6069800 8568500 6751000 1768300 0 1960300 0 0 449 227 410 2692;2693;2694;2695;2696 1773 1773 1 ALGALVDSCAPGLCPDWESWDPQKPVDNAR Unmodified 3323.5339 0.53394582 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;O75369-5;O75369-4 FLNB Filamin-B yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 69.212 69.377 3 0.00030037 24813 20181213_JW_Orientia_Karp_3_1 72.935 55.719 38945000 11457000 0 14055000 0 0 0 8337700 5094600 450 1520 411 2697;2698;2699;2700 1774;1775;1776 1775 3 ALGDLISATK Unmodified 987.56006 0.56006086 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 51.186 51.46 2 0.020954 20111 20181213_JW_Orientia_Karp_1_1 83.499 43.432 25640000 6609300 8673500 7998400 2359000 0 0 0 0 451 2016 412 2701;2702;2703;2704 1777;1778 1777 2 ALGGEDVR Unmodified 815.41373 0.41373097 797 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 26.106 26.451 2 0.0051444 6815 20181213_JW_Orientia_Karp_1_1 120.46 57.74 558890000 112620000 164170000 91738000 45477000 25372000 11590000 81603000 26317000 + 452 797 413 2705;2706;2707;2708;2709;2710;2711;2712 1779;1780;1781;1782;1783;1784;1785;1786 1779 8 ALGQNPTNAEVLK Unmodified 1353.7252 0.72522871 724 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660-2;P60660;Q6IBG5;F8VPF3;F8W1I5;A0A024RB31;B4E368;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.723 41.043 2 3.3941E-17 13255 20181213_JW_Orientia_Karp_1_3 217.02 150.59 2209200000 636980000 332180000 426250000 198290000 147480000 81731000 295570000 90675000 453 724 414 2713;2714;2715;2716;2717;2718;2719;2720 1787;1788;1789;1790;1791;1792;1793;1794 1789 8 ALGQNPTNAEVLK Deamidation (NQ) 1354.7092 0.70924429 724 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660-2;P60660;Q6IBG5;F8VPF3;F8W1I5;A0A024RB31;B4E368;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 43.881 44.225 2 2.6213E-07 15609 20181213_JW_Orientia_Karp_1_1 190.26 124.79 260100000 47057000 67898000 40686000 15501000 0 63060000 22827000 3073400 454 724 414 2721;2722;2723;2724;2725;2726;2727;2728 1795;1796;1797;1798;1799 1795 237 5 ALGVEQDLALPAIAVIGDQSSGK Unmodified 2251.206 0.20597662 1611;1612 P20591;P20591-2;H9KVC7;H9KVC9;Q75MY7;P20592-2;C9JEL4;P20592 MX1;MX2 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed;Interferon-induced GTP-binding protein Mx2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 73.863 73.884 3 4.8545E-06 33883 20181213_JW_Orientia_Karp_1_3 128.38 87.179 326860000 110390000 101110000 72883000 283280 12105000 3036800 27056000 0 455 1611;1612 415 2729;2730;2731;2732;2733;2734;2735 1800;1801;1802;1803;1804;1805 1802 6 ALHHGIDLEK Unmodified 1131.6037 0.60365701 829 D3DP78;P14868-2;P14868;Q53T60;H7BZ35 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 24.127 24.502 3 0.0037718 5480 20181213_JW_Orientia_Karp_1_3 117.71 68.283 18587000 0 15692000 0 402210 869350 0 1622700 0 456 829 416 2736;2737;2738;2739;2740;2741 1806;1807;1808;1809 1808 4 ALIAGGGAPEIELALR Unmodified 1549.8828 0.88279198 349 B7Z9L0;B7Z2Z8;A8K3C3;P50991;P50991-2;B7Z2F4 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 66.322 66.564 2 0.010995 29693 20181213_JW_Orientia_Karp_1_1 108.68 75.645 20413000 7340500 5612800 5549600 0 0 0 1031800 878230 457 349 417 2742;2743;2744;2745;2746 1810;1811;1812 1810 3 ALIEILATR Unmodified 998.61243 0.61243078 1570 P08133-2;P08133;Q6ZP35;E7EMC6;E5RK69;B7Z582;A8K3Q7 ANXA6 Annexin A6;Annexin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 60.005 60.281 2 0.00080756 23213 20181213_JW_Orientia_Karp_2_1 138.4 45.956 24853000 3385900 0 7392500 597470 5462000 7194300 0 820990 458 1570 418 2747;2748;2749;2750;2751;2752;2753 1813;1814;1815;1816;1817 1815 5 ALIESYQNLTR Unmodified 1306.6881 0.68811492 706 B6VEX5;B6VEX4;F5H1G9;B6VEX3;F8WA55;Q59G41;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;Q8IZP0-11 ABI1 Abl interactor 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 49.513 49.763 2 0.03152 19030 20181213_JW_Orientia_Karp_1_1 78.653 35.909 72674000 18075000 15577000 22667000 9871300 6484600 0 0 0 459 706 419 2754;2755;2756;2757;2758 1818 1818 1 ALIEVLQPLIAEHQAR Unmodified 1800.0258 0.025767826 138 A0A024R6K8;P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.996 64.197 3 0.0016256 27591 20181213_JW_Orientia_Karp_1_3 103.88 83.138 411170000 134750000 158610000 43640000 1273800 27875000 28120000 0 16900000 460 138 420 2759;2760;2761;2762;2763;2764;2765 1819;1820;1821;1822;1823;1824 1821 6 ALINSVIAGDDSFK Unmodified 1448.7511 0.75110911 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS 1 60.527 60.527 2 1.4863E-05 25981 20181213_JW_Orientia_Karp_1_1 174.46 121.37 135450000 135450000 0 0 0 0 0 0 0 461 1266 421 2766 1825 1825 1 ALINSVIAGDDSFK Deamidation (NQ) 1449.7351 0.73512469 1266 Karp_01074 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 61.64 61.913 2 0.0018765 21630 20181213_JW_Orientia_Karp_3_1 143.55 81.081 117240000 29314000 20774000 28245000 6199400 16349000 13005000 0 3354700 462 1266 421 2767;2768;2769;2770;2771;2772;2773;2774 1826;1827;1828;1829;1830 1829 675 5 ALISEYADLEK Unmodified 1250.6394 0.63943339 1128 Karp_00331 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 2 53.575 53.907 2 1.7161E-25 18451 20181213_JW_Orientia_Karp_3_1 246.93 172.77 2335700000 647340000 530720000 386540000 274810000 195660000 237280000 48970000 14353000 463 1128 422 2775;2776;2777;2778;2779;2780;2781;2782;2783;2784;2785;2786;2787;2788;2789 1831;1832;1833;1834;1835;1836 1835 5 ALIVAPPR Unmodified 835.52797 0.52797287 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 44.223 44.49 2 0.016891 14518 20181213_JW_Orientia_Karp_3_1 92.692 29.714 227710000 66835000 114180000 23592000 0 7099400 3327100 12679000 0 464 1333 423 2790;2791;2792;2793;2794;2795 1837;1838;1839;1840 1840 4 ALLAEGVILR Unmodified 1053.6546 0.65462995 1042 J3QLR8;Q9Y3D9 MRPS23 28S ribosomal protein S23, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 2 58.462 58.645 2 0.00034517 24839 20181213_JW_Orientia_Karp_1_1 139.97 77.506 20902000 12602000 4188300 4111400 0 0 0 0 0 465 1042 424 2796;2797;2798;2799 1841;1842;1843 1841 3 ALLFIPR Unmodified 828.52216 0.52215921 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50 HSP90AB1 Heat shock protein HSP 90-beta yes no 0 0 0 0 By MS/MS By matching 1 1 58.196 58.626 2 0.036531 24572 20181213_JW_Orientia_Karp_1_2 85.306 23.309 5085500 0 4759700 0 0 0 0 0 325800 466 251 425 2800;2801 1844 1844 1 ALLFVPR Unmodified 814.50651 0.50650915 1057 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q96HX7;Q86U12 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS 1 55.237 55.237 2 0.042925 22639 20181213_JW_Orientia_Karp_1_1 91.093 0 0 0 0 0 0 0 0 0 0 467 1057 426 2802 1845 1845 1 ALLLLCGEDD Unmodified 1117.5325 0.53252548 1573 V9HWE0;P08758;D6RBL5;D6RBE9 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 73.529 73.53 2 0.0015098 27281 20181213_JW_Orientia_Karp_3_1 147.69 107.64 41674000 7220300 0 0 0 0 2828300 31626000 0 468 1573 427 2803;2804;2805 1846 1846 1 ALLLPQEVILLPR Unmodified 1473.9283 0.92828561 1063 Karp_00007 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.74 73.761 2 0.0010859 34137 20181213_JW_Orientia_Karp_1_1 118.48 94.961 761620000 331550000 152280000 156860000 10243000 24911000 9859300 75921000 0 469 1063 428 2806;2807;2808;2809;2810;2811;2812 1847;1848;1849;1850;1851;1852;1853;1854 1847 8 ALLLTFFYR Unmodified 1142.6488 0.64881629 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS 1 73.008 73.058 2 0.032194 27004 20181213_JW_Orientia_Karp_3_1 89.752 45.983 0 0 0 0 0 0 0 0 0 470 1262 429 2813 1855 1855 1 ALLPQQK Unmodified 796.48069 0.48068833 1107 Karp_00285 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 32.232 32.625 2 0.012607 8824 20181213_JW_Orientia_Karp_3_1 131.65 47.63 2513000000 664110000 987590000 438050000 134530000 0 0 284550000 4203700 471 1107 430 2814;2815;2816;2817;2818;2819;2820 1856;1857;1858;1859 1859 4 ALLQSSASR Unmodified 931.50869 0.50869399 217 A8K6Y1;Q6PIN5;A0A024RB85;Q05D08;Q9UQ80 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By matching 1 1 28.353 28.679 2 0.023569 7870 20181213_JW_Orientia_Karp_1_1 81.95 30.001 11854000 9276800 0 0 0 0 0 2577300 0 472 217 431 2821;2822 1860 1860 1 ALLSDIVK Unmodified 857.52222 0.52221879 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 52.502 52.752 2 0.0047891 21062 20181213_JW_Orientia_Karp_1_1 125.81 63.1 544030000 156330000 115830000 65214000 75732000 44744000 86180000 0 0 473 1358 432 2823;2824;2825;2826;2827;2828 1861;1862;1863;1864;1865;1866 1861 6 ALLVEPVINSYLLAER Unmodified 1799.0193 0.019285464 582 B4DIT7;V9HWG3;P21980;B4DTN7 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 73.216 73.273 2 0.0009478 33498 20181213_JW_Orientia_Karp_1_3 128.73 95.796 219880000 68715000 37332000 34481000 16701000 10622000 7546100 32411000 12076000 474 582 433 2829;2830;2831;2832;2833;2834;2835;2836 1867;1868;1869;1870;1871;1872 1869 6 ALLVTASQCQQPAENK Unmodified 1756.8778 0.87778296 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;Q01518;Q5T0R1;Q01518-2;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R9;B4DNY3 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.716 41.036 2 1.2052E-19 13901 20181213_JW_Orientia_Karp_1_1 267.23 183.35 69752000 20122000 11255000 18843000 3538100 1683000 1223300 9566700 3521700 475 498 434 2837;2838;2839;2840;2841;2842;2843;2844 1873;1874;1875;1876;1877;1878;1879;1880;1881 1873 9 ALLYLCGGDD Unmodified 1095.4907 0.49066067 124 V9HW65;A0A024R5Z7;P07355;P07355-2;A6NMY6;B4DNH8;B3KRQ1 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 68.309 68.443 2 0.00017139 27057 20181213_JW_Orientia_Karp_2_2 146.21 117.04 6405000 0 0 3010400 0 1923700 1470900 0 0 476 124 435 2845;2846;2847;2848;2849 1882;1883;1884;1885 1884 4 ALMDEVVK Oxidation (M) 919.46847 0.46846866 1539 V9HWF4;P00558-2;P00558;B4DHB3;B4E1H9;B4DWQ3;B4DHM5 HEL-S-68p;PGK1 Phosphoglycerate kinase;Phosphoglycerate kinase 1 yes no 0 0 1 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 33.577 33.904 2 0.033634 8670 20181213_JW_Orientia_Karp_2_2 76.774 11.511 32155000 9908500 6395200 7754000 4873400 2243300 0 0 980220 477 1539 436 2850;2851;2852;2853;2854;2855 1886 1886 1 ALMGANMQR 2 Oxidation (M) 1022.4637 0.46373441 1170 Karp_00624 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 2 17.505 17.927 2 0.00015854 3329 20181213_JW_Orientia_Karp_2_1 177.71 128.27 123870000 26377000 18672000 13086000 8744700 1631900 4675600 6985000 43699000 478 1170 437 2856;2857;2858;2859;2860;2861;2862;2863;2864;2865 1887;1888;1889;1890;1891;1892;1893;1894;1895;1896 1890 714;715 10 ALMGANMQR 2 Oxidation (M);Deamidation (NQ) 1023.4477 0.44774999 1170 Karp_00624 yes yes 0 1 2 0 By MS/MS 1 21.57 21.819 2 0.007999 4396 20181213_JW_Orientia_Karp_1_2 90.777 51.472 5451700 0 5451700 0 0 0 0 0 0 479 1170 437 2866 1897 1897 569 714;715 1 ALMGANMQR Oxidation (M) 1006.4688 0.46881979 1170 Karp_00624 yes yes 0 0 1 0 By MS/MS 1 26.141 26.492 2 0.0077867 5306 20181213_JW_Orientia_Karp_2_2 120.65 57.339 0 0 0 0 0 0 0 0 0 480 1170 437 2867 1898 1898 714;715 1 ALMGSPQLVAAVVR Unmodified 1410.8017 0.80170489 924;555;59 B4DE59;C9JTX4;C9J826;C9JK18;C9JKY1;F5GWP8;A0A024R1X8;P14923 JUP;KRT17 Junction plakoglobin no no 0 0 0 0 By MS/MS By matching 1 1 61.424 61.875 2 0.025538 26725 20181213_JW_Orientia_Karp_1_2 81.525 47.658 4186700 0 4065600 0 0 0 0 121100 0 481 555;924;59 438 2868;2869 1899 1899 1 ALMLQGVDLLADAVAVTMGPK 2 Oxidation (M) 2144.1221 0.12211233 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;Q53SE2;E7ESH4;E7EXB4;C9JL25;P10809-2;C9JL19;C9JCQ4;C9J0S9 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 74.815 74.845 3 1.3864E-08 30513 20181213_JW_Orientia_Karp_2_3 162.42 123.53 101130000 32517000 19956000 25324000 898020 12301000 7870400 0 2268800 482 81 439 2870;2871;2872;2873;2874;2875;2876 1900;1901;1902;1903;1904;1905 1904 87;88 6 ALMLQGVDLLADAVAVTMGPK Oxidation (M) 2128.1272 0.12719771 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;Q53SE2;E7ESH4;E7EXB4;C9JL25;P10809-2;C9JL19;C9JCQ4;C9J0S9 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 3 2 3 4 2 2 3 1 76.151 76.148 2;3 4.3481E-06 36053 20181213_JW_Orientia_Karp_1_1 146.68 107.16 212150000 67080000 19073000 56384000 11874000 13383000 8506700 34551000 1298600 483 81 439 2877;2878;2879;2880;2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896 1906;1907;1908;1909 1906 87;88 4 ALMLQGVDLLADAVAVTMGPK Unmodified 2112.1323 0.13228309 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;Q53SE2;E7ESH4;E7EXB4;C9JL25;P10809-2;C9JL19;C9JCQ4;C9J0S9 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 77.754 77.715 3 0.00036138 36711 20181213_JW_Orientia_Karp_1_1 111.57 71.66 26656000 18412000 0 0 1073400 0 1531800 5638700 0 484 81 439 2897;2898;2899;2900 1910 1910 1 ALNFCMPILEK Unmodified 1334.6727 0.67266455 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 66.885 67.135 2 0.00047484 29638 20181213_JW_Orientia_Karp_1_2 142.36 48.763 8729000 0 8729000 0 0 0 0 0 0 485 1058 440 2901;2902 1911;1912 1911 2 ALNFCMPILEK Oxidation (M) 1350.6676 0.66757917 1058 Karp_00002 yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.872 56.214 2 0.0012634 21064 20181213_JW_Orientia_Karp_2_3 121.83 54.623 65158000 17346000 12611000 0 5679700 9081400 6478100 13961000 0 486 1058 440 2903;2904;2905;2906;2907;2908 1913;1914;1915;1916 1915 577 4 ALNLILR Unmodified 811.52797 0.52797287 1442 Karp_02417 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 3 4 4 2 1 53.365 53.683 2 0.00064486 20892 20181213_JW_Orientia_Karp_2_2 178.02 50.362 21527000000 5039400000 5406100000 2824600000 3190600000 1727400000 3330000000 7337000 1562000 487 1442 441 2909;2910;2911;2912;2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934 1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;1939;1940;1941 1934 25 ALNMLISQYK Oxidation (M) 1195.6271 0.62709457 1392 Karp_02141 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 47.574 47.919 2 2.0042E-05 17751 20181213_JW_Orientia_Karp_1_1 161.27 116.82 75269000 16365000 21063000 13870000 7172400 3327500 4802600 119340 8550100 488 1392 442 2935;2936;2937;2938;2939;2940;2941;2942 1942;1943;1944;1945;1946;1947 1942 989 6 ALNNFNPELHSVLK Unmodified 1594.8467 0.84674083 1414 Karp_02240 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.401 49.703 3 0.0023666 18360 20181213_JW_Orientia_Karp_1_3 103.97 74.425 1143000000 225830000 244090000 238990000 192740000 109720000 109960000 0 21659000 489 1414 443 2943;2944;2945;2946;2947;2948;2949 1948;1949;1950;1951;1952;1953;1954;1955;1956 1951 9 ALNNFNPELHSVLK Deamidation (NQ) 1595.8308 0.83075641 1414 Karp_02240 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 1 52.783 53.123 2;3 0.0018827 18506 20181213_JW_Orientia_Karp_3_1 135.1 68.809 798580000 92310000 408490000 60204000 75297000 57387000 94901000 8825400 1165500 490 1414 443 2950;2951;2952;2953;2954;2955;2956;2957;2958;2959;2960;2961;2962;2963 1957;1958;1959;1960;1961 1961 928;929 4 ALNNVMK Oxidation (M) 804.41637 0.41637351 1266 Karp_01074 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 19.099 19.364 2 0.010187 3917 20181213_JW_Orientia_Karp_1_1 117.56 52.231 23135000 6800300 6662100 3283900 3129300 253780 1998800 1006800 0 491 1266 444 2964;2965;2966;2967;2968;2969;2970 1962;1963;1964 1962 826 3 ALNTAIQIFEHK Unmodified 1383.751 0.75104953 1161 Karp_00600 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 50.927 51.187 3 0.0050309 18290 20181213_JW_Orientia_Karp_2_3 91.858 56.18 85032000 13009000 7536700 0 38287000 6118500 20081000 0 0 492 1161 445 2971;2972;2973;2974;2975 1965;1966;1967;1968 1968 4 ALNVEPDGTGLTCSLAPNIISQL Unmodified 2382.2101 0.21007572 1645 V9HW35;P30044-2;P30044;P30044-3;P30044-4 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 77.1 77.086 2 0.026658 31740 20181213_JW_Orientia_Karp_2_1 59.606 24.651 29909000 0 0 6109500 5125900 4018600 0 14656000 0 493 1645 446 2976;2977;2978;2979 1969 1969 1 ALPAVQQNNLDEDLIR Unmodified 1807.9428 0.94282606 42 A0A024R1A3;P22314-2;P22314 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 57.856 58.17 2 0.0074184 23870 20181213_JW_Orientia_Karp_1_3 124.42 62.458 36636000 17174000 0 14467000 2275400 0 0 0 2718900 494 42 447 2980;2981;2982;2983;2984 1970;1971;1972 1972 1 ALPFWNEEIVPQIK Unmodified 1682.9032 0.90319307 1608 Q6P6D7;Q6FHU2;Q53G35;P18669;B4DMJ7;B4DKL5;Q6FHK8;B7Z9E5;B4DJA4;A4D2J6;P15259;B7ZW15;Q8N0Y7 PGAM1;hCG_2015269;PGAM2;PGAM4 Phosphoglycerate mutase;Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 72.67 72.739 2 0.012327 26825 20181213_JW_Orientia_Karp_3_1 109.72 52.374 592510000 125640000 85611000 118360000 23494000 42548000 21221000 100090000 75552000 495 1608 448 2985;2986;2987;2988;2989;2990;2991;2992 1973 1973 1 ALPGQLKPFETLLSQNQGGK Unmodified 2125.1532 0.15315318 1574;756 V9HWE9;P09211;C7DJS1;C7DJS2 HEL-S-22;GSTP1 Glutathione S-transferase P no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 60.192 60.557 3 0.0014392 23449 20181213_JW_Orientia_Karp_2_1 105.01 65.482 247430000 0 69387000 61701000 28744000 34094000 40603000 6507900 6390200 496 1574;756 449 2993;2994;2995;2996;2997;2998;2999 1974;1975;1976 1976 3 ALPLEAEVAPVK Unmodified 1235.7125 0.71253876 879 E7EVA0;P27816;P27816-2;P27816-6;B4DM10;A0A024R2V2;A0A024R2S1;Q6NX68 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.7 55.015 2 0.0045337 20417 20181213_JW_Orientia_Karp_2_3 110.38 77.157 139520000 18988000 23314000 22339000 18226000 25777000 30396000 0 479460 497 879 450 3000;3001;3002;3003;3004;3005;3006 1977;1978;1979;1980 1979 4 ALQALEELR Unmodified 1041.5819 0.58185893 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 2 49.294 49.627 2 0.0047506 18387 20181213_JW_Orientia_Karp_1_3 105.4 9.0652 76589000 13988000 26902000 23424000 7816100 3310300 0 0 1147900 498 1803 451 3007;3008;3009;3010;3011;3012;3013;3014 1981;1982 1982 2 ALQDLENAASGDATVR Unmodified 1629.7958 0.79582747 1981 Q9NQG5;A2A2M0 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 49.321 49.736 2 0.0011751 17288 20181213_JW_Orientia_Karp_2_2 153.14 95.606 18765000 0 8237500 0 5287500 4923000 0 0 316450 499 1981 452 3015;3016;3017;3018;3019 1983;1984;1985 1985 3 ALQDLGLR Unmodified 884.50797 0.50796571 1536 V9HW53;O95865;Q5SSV3;Q5SRR8;H0Y7N1 HEL-S-277;DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 46.758 47.038 2 0.0090088 15770 20181213_JW_Orientia_Karp_2_2 107.01 29.267 35729000 0 21784000 7063300 1339100 3198400 2344000 0 0 500 1536 453 3020;3021;3022;3023;3024;3025 1986;1987;1988;1989 1989 4 ALQDLQLDQGNQK Unmodified 1469.7474 0.74742071 1980 Q9NQ48;H7C488;Q9NQ48-2;Q9NQ48-3 LZTFL1 Leucine zipper transcription factor-like protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 44.415 44.727 2 0.0017797 15373 20181213_JW_Orientia_Karp_1_3 128.85 78.739 12520000 0 5222700 3787600 1693100 0 1816400 0 0 501 1980 454 3026;3027;3028;3029 1990;1991 1990 2 ALQEGEGDLSISADR Unmodified 1559.7427 0.74272927 242 A8K067;B4DI19;Q53HG6;A8MVQ3;B4DKY1;A0A024RCG3;B4DPV7;P49589-2;P49589;P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 1 45.911 45.911 2 0.010518 16533 20181213_JW_Orientia_Karp_1_1 96.371 59.924 8841300 8841300 0 0 0 0 0 0 0 502 242 455 3030 1992 1992 1 ALQFLEEVK Unmodified 1075.5914 0.59136099 262 A1JUI8;B4DPJ8;Q59ET3;B2R9K8;A0A024RDL1;P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 55.564 55.774 2 0.0030099 23090 20181213_JW_Orientia_Karp_1_1 113.71 47.355 95604000 46308000 20906000 20488000 0 3668400 4232900 0 0 503 262 456 3031;3032;3033;3034;3035 1993;1994;1995 1993 3 ALQRTQAEIQEMK Oxidation (M);3 Deamidation (NQ) 1563.745 0.74503745 1976 Q9H7C4-2;Q9H7C4 SYNC Syncoilin yes no 0 3 1 1 By MS/MS 1 68.647 68.647 2 0.00071265 30906 20181213_JW_Orientia_Karp_1_1 125.68 18.802 0 0 0 0 0 0 0 0 0 504 1976 457 3036 1996 1996 2084;2085;2086 1524 1 ALQSVGQIVGEVLK Unmodified 1439.8348 0.83477916 1735 V9HW24;P62333;H0YJE9;H0YJT1;H0YJC0 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 66.833 67.053 2 0.00028807 29632 20181213_JW_Orientia_Karp_1_2 152 98.407 19963000 0 9514500 3976900 0 4153600 2183500 134820 0 505 1735 458 3037;3038;3039;3040;3041 1997;1998 1997 2 ALQVELVPTGEIIR Acetyl (Protein N-term) 1578.8981 0.8981077 1488 O00159 MYO1C Unconventional myosin-Ic yes yes 1 0 0 0 By MS/MS By matching By matching 1 1 1 76.472 76.472 2 0.0051672 35943 20181213_JW_Orientia_Karp_1_1 107.18 64.091 20795000 12770000 6759400 0 0 0 1266100 0 0 506 1488 459 3042;3043;3044 1999 1999 1 ALQYSYR Unmodified 899.45012 0.45011648 1249 Karp_00926 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.169 33.82 2 0.012436 9440 20181213_JW_Orientia_Karp_3_1 129.68 62.883 9341700 0 0 0 0 0 0 9341700 0 507 1249 460 3045;3046;3047;3048;3049;3050;3051 2000;2001;2002;2003;2004;2005;2006 2006 7 ALREEAWSVLEEAQK Unmodified 1757.8948 0.89481323 1095 Karp_00244 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.06 53.31 3 1.4789E-05 21052 20181213_JW_Orientia_Karp_1_2 163.62 57.957 283030000 91384000 51233000 74994000 17188000 15276000 32954000 0 0 508 1095 461 3052;3053;3054;3055;3056;3057 2007;2008;2009;2010;2011;2012 2008 6 ALSAIADLLTNEHER Unmodified 1651.8529 0.85294842 781 Q96FS1;Q68DU0;C9JZR2;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;O60716-7;O60716-5;O60716-3;O60716-6;O60716-4;O60716-2;O60716;Q7KZJ3;A0A024R4Z0;A0A024R4Y7;O60716-32;O60716-31;O60716-29;O60716-27;O60716-30;O60716-28;O60716-26;O60716-25 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 2 2 1 1 57.755 57.947 2;3 0.0023167 24015 20181213_JW_Orientia_Karp_1_2 121.21 57.087 47736000 14692000 20281000 8708700 0 0 4054300 0 0 509 781 462 3058;3059;3060;3061;3062;3063 2013;2014 2014 2 ALSDHHIYLEGTLLK Unmodified 1708.9148 0.91482039 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;A4UCS9;H3BU78;A4UCT0 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 48.329 48.63 3 0.018252 16738 20181213_JW_Orientia_Karp_2_1 77.192 28.963 75588000 20339000 25061000 13384000 4855300 3029400 4239200 0 4680600 510 1546 463 3064;3065;3066;3067;3068;3069;3070 2015 2015 1 ALSEHIASITAVQNLEK Unmodified 1822.9789 0.97887721 1392 Karp_02141 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 50.376 50.708 2;3 2.603E-16 19294 20181213_JW_Orientia_Karp_1_2 239.38 179.95 798730000 172230000 252860000 146470000 101920000 43710000 65180000 8850500 7517100 511 1392 464 3071;3072;3073;3074;3075;3076;3077;3078;3079;3080;3081;3082;3083;3084;3085 2016;2017;2018;2019;2020;2021;2022;2023;2024 2017 8 ALSFEELSFK Unmodified 1169.5968 0.5968403 1230 Karp_00897 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.113 62.386 2 1.6079E-08 26508 20181213_JW_Orientia_Karp_1_3 199.89 128.01 994920000 316380000 226590000 160320000 8468900 46002000 195640000 0 41513000 512 1230 465 3086;3087;3088;3089;3090;3091;3092 2025;2026;2027;2028;2029;2030;2031 2026 7 ALSMPLNGLK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1101.574 0.57399637 1863 Q6FIC5;Q9Y696;B4DWC4;Q9NVF8;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 1 1 1 0 By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 66.69 66.812 2 0.0006915 29972 20181213_JW_Orientia_Karp_1_1 117.81 63.035 42571000 28257000 0 9181600 0 1653900 0 0 3478700 513 1863 466 3093;3094;3095;3096;3097;3098;3099;3100 2032;2033;2034;2035;2036;2037;2038 2033 1179 1474 6 ALSMPLNGLK Acetyl (Protein N-term);Deamidation (NQ) 1085.5791 0.57908174 1863 Q6FIC5;Q9Y696;B4DWC4;Q9NVF8;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 1 1 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 74.59 74.643 2 0.00015716 34643 20181213_JW_Orientia_Karp_1_1 147.19 89.326 20286000 14487000 5200100 0 0 0 0 0 599620 514 1863 466 3101;3102;3103;3104 2039;2040;2041 2039 1179 3 ALSNLESIPGGYNALR Unmodified 1673.8737 0.87368386 65 A0A024R258;B3KNI8;B3KNI2;A0A024R284;Q9UMX0-2;Q9UMX0;Q59FJ2;H0YDS0;D3DVA8;B4DZF6;Q59F94;Q9NRR5 UBQLN1;UBQLN4 Ubiquilin-1;Ubiquilin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.85 58.202 2 0.00068073 24189 20181213_JW_Orientia_Karp_1_2 171.99 103.21 93496000 0 31862000 19912000 12084000 13946000 10111000 0 5580600 515 65 467 3105;3106;3107;3108;3109;3110 2042;2043;2044;2045;2046;2047;2048 2042 7 ALSVGNIDDALQCYSEAIK Unmodified 2065.999 0.99902031 377 V9HW72;A8K690;P31948;P31948-2;P31948-3;F5GXD8;F5H783 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 70.324 70.474 2 0.0016044 25314 20181213_JW_Orientia_Karp_3_1 106.3 51.039 13898000 0 2126700 0 1522800 2653600 2645700 4949000 0 516 377 468 3111;3112;3113;3114;3115 2049 2049 1 ALTGHLEEVVLALLK Unmodified 1604.9501 0.95014327 1548 Q5TZZ9;P04083;B5BU38;Q5T3N1;Q5T3N0 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 1 73.274 73.301 2;3 3.0227E-05 33855 20181213_JW_Orientia_Karp_1_2 160.86 126.48 306650000 16813000 29584000 10154000 13740000 22112000 21692000 145500000 47047000 517 1548 469 3116;3117;3118;3119;3120;3121;3122;3123;3124;3125;3126;3127;3128 2050;2051;2052;2053;2054;2055;2056;2057 2051 8 ALTQTGGPHVK Unmodified 1107.6037 0.60365701 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 22.014 22.358 2 0.0036259 4680 20181213_JW_Orientia_Karp_1_2 111.06 54.25 11648000 2572500 3963100 2017800 827560 0 232050 1404600 630370 518 1615 470 3129;3130;3131;3132;3133;3134;3135 2058;2059 2058 2 ALTSEIALLQSR Unmodified 1300.7351 0.73506511 1554 Q6IBR0;Q53EP4;P04843;Q96HX3;B4DL99;B4DNJ5;B7Z4L4 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.8 58.101 2 5.5972E-23 24097 20181213_JW_Orientia_Karp_1_2 233.84 159.46 139000000 31627000 32472000 44592000 6163200 12116000 5892600 0 6132700 519 1554 471 3136;3137;3138;3139;3140;3141;3142 2060;2061;2062;2063;2064;2065;2066;2067 2061 8 ALTSELANAR Unmodified 1044.5564 0.55637247 1630 V9HWC0;P26038;B7Z4C7 HEL70;MSN Moesin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 37.345 37.679 2 0.00046388 11686 20181213_JW_Orientia_Karp_1_2 135.71 65.187 180120000 59790000 48679000 23015000 15068000 16182000 0 17386000 0 520 1630 472 3143;3144;3145;3146;3147;3148;3149 2068;2069 2068 2 ALTSELANAR Deamidation (NQ) 1045.5404 0.54038805 1630 V9HWC0;P26038;B7Z4C7 HEL70;MSN Moesin yes no 0 1 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 38.787 39.147 2 0.005339 11817 20181213_JW_Orientia_Karp_2_1 110.76 60.723 12676000 0 0 2908700 2506100 1744900 1019600 4496300 0 521 1630 472 3150;3151;3152;3153;3154 2070;2071;2072 2070 1087 3 ALTVPELTQQMFDAK Unmodified 1690.86 0.86000763 1747;1550 P04350;B4DJ43;B4DE77;B4DFH6;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0 TUBB4A;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta-4B chain no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 68.257 68.444 2 0.00089313 30819 20181213_JW_Orientia_Karp_1_1 141.34 89.416 187450000 67075000 30510000 56192000 9399800 9698500 8425100 0 6151200 522 1550;1747 473 3155;3156;3157;3158;3159;3160;3161 2073;2074;2075 2073 3 ALTVPELTQQMFDAR Oxidation (M) 1734.8611 0.86107026 1964 Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB6 Tubulin beta-6 chain yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 59.701 60.001 2 0.00067215 25224 20181213_JW_Orientia_Karp_1_2 135.04 89.609 49524000 19524000 10660000 9297100 1244500 2866600 0 5932300 0 523 1964 474 3162;3163;3164;3165;3166;3167 2076;2077;2078;2079 2077 1520 4 ALTVPELTQQMFDAR Unmodified 1718.8662 0.86615564 1964 Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB6 Tubulin beta-6 chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 69.161 69.32 2 7.5165E-20 30850 20181213_JW_Orientia_Karp_1_3 222.73 152.67 96128000 29468000 0 17950000 4654900 5732700 3338200 22647000 12337000 524 1964 474 3168;3169;3170;3171;3172;3173;3174;3175 2080;2081;2082;2083;2084 2082 5 ALTVPELTQQVFDAK Unmodified 1658.8879 0.88793694 1566 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8 TUBB;XTP3TPATP1 Tubulin beta chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 67.361 67.531 2;3 3.4709E-13 29863 20181213_JW_Orientia_Karp_1_2 202.29 127.45 1217000000 368490000 240660000 315750000 0 112320000 47332000 0 132430000 525 1566 475 3176;3177;3178;3179;3180;3181;3182;3183;3184;3185;3186 2085;2086;2087;2088;2089;2090 2086 6 ALVDDIDHLGNR Unmodified 1336.6735 0.67352749 1170 Karp_00624 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 49.03 49.331 3 0.023384 18112 20181213_JW_Orientia_Karp_1_3 75.695 32.091 242970000 54131000 65527000 42554000 47183000 8194800 20709000 0 4674200 526 1170 476 3187;3188;3189;3190;3191;3192;3193 2091;2092;2093 2092 3 ALVDMVASGLITK Unmodified 1316.7374 0.7373733 1311 Karp_01258 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 2 1 1 67.971 68.173 2 0.00069664 30656 20181213_JW_Orientia_Karp_1_1 140.39 98.39 12456000 6227300 0 5554400 0 0 0 0 674090 527 1311 477 3194;3195;3196;3197 2094;2095 2094 2 ALVDMVASGLITK Oxidation (M) 1332.7323 0.73228792 1311 Karp_01258 yes yes 0 0 1 0 By MS/MS 1 61.025 61.224 2 0.019336 25783 20181213_JW_Orientia_Karp_1_3 101.35 62.596 0 0 0 0 0 0 0 0 0 528 1311 477 3198 2096 2096 864 1 ALVEMQDVVAELLR Unmodified 1584.8545 0.85452832 156 A0A024R816;Q9C0H2-3;Q9C0H2-2;Q9C0H2;Q9C0H2-4 TTYH3 Protein tweety homolog;Protein tweety homolog 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 75.4 75.439 2 0.002357 34910 20181213_JW_Orientia_Karp_1_3 122.46 55.306 34050000 10196000 9010400 13852000 0 0 0 0 991810 529 156 478 3199;3200;3201;3202 2097;2098;2099 2099 3 ALVILAK Unmodified 726.50036 0.50036114 1956 V9HWC2;Q99497;K7ELW0 HEL-S-67p;PARK7 Protein deglycase DJ-1 yes no 0 0 0 0 By MS/MS 1 46.078 46.229 2 0.018395 15285 20181213_JW_Orientia_Karp_2_2 104.94 44.541 2010900 0 0 0 0 2010900 0 0 0 530 1956 479 3203 2100 2100 1 ALVLDCHYPEDEVGQEDEAESDIFSIR Unmodified 3135.3979 0.39788908 374 A8K651;Q07021;I3L3Q7;I3L3B0 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 67.449 67.726 3 0.00029969 23872 20181213_JW_Orientia_Karp_3_1 87.457 69.141 17743000 0 0 4661700 0 5159000 0 5303300 2618800 531 374 480 3204;3205;3206;3207 2101;2102 2101 2 ALVQNDTLLQVK Deamidation (NQ) 1341.7504 0.75038083 1926 Q92522 H1FX Histone H1x yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 58.202 58.469 2 0.00047554 24700 20181213_JW_Orientia_Karp_1_1 157.97 51.091 127360000 35064000 43564000 35544000 0 5426700 7601300 161720 0 532 1926 481 3208;3209;3210;3211;3212;3213 2103;2104;2105;2106 2103 1202 4 ALVQNDTLLQVK Unmodified 1340.7664 0.76636524 1926 Q92522 H1FX Histone H1x yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 52.166 52.54 2 2.6378E-05 18812 20181213_JW_Orientia_Karp_2_1 173.24 82.635 495300000 254430000 77180000 67514000 27170000 27795000 28277000 2810900 10131000 533 1926 481 3214;3215;3216;3217;3218;3219;3220;3221;3222 2107;2108;2109;2110;2111;2112 2109 6 ALVSAQWVAEALR Unmodified 1412.7776 0.77759863 434 Q2VEU0;Q2VEU1;B1AH49;Q59HD5;P25325;P25325-2 MPST Sulfurtransferase;3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 67.128 67.331 2 0.001433 26108 20181213_JW_Orientia_Karp_3_2 132.59 80.66 7102100 0 0 1966500 0 3289000 1100500 0 746080 534 434 482 3223;3224;3225;3226;3227;3228 2113;2114;2115;2116 2116 4 ALWTGALTPGR Unmodified 1141.6244 0.62439245 810 CON__Q2KJF1 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 55.025 55.259 2 0.014739 20327 20181213_JW_Orientia_Karp_2_2 94.309 61.559 13845000 0 0 5876800 0 4328200 3639800 0 0 + 535 810 483 3229;3230;3231 2117;2118 2117 2 ALYDAELSQMQTHISDTSVVLSMDNNR 2 Oxidation (M) 3069.4019 0.4019286 341;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT6B;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 0 2 0 By MS/MS 1 55.541 56.193 3 0.0044368 19579 20181213_JW_Orientia_Karp_3_1 61.039 11.773 9003100 0 0 0 0 0 0 9003100 0 + 536 341;793;805 484 3232 2119 2119 226;227 1 ALYDAELSQMQTHISDTSVVLSMDNNR 2 Oxidation (M);Deamidation (NQ) 3070.3859 0.38594418 341;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT6B;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 1 2 0 By MS/MS 1 57.437 58.047 3 0.017765 20520 20181213_JW_Orientia_Karp_3_2 53.496 9.6011 947720 0 0 0 0 0 0 0 947720 + 537 341;793;805 484 3233 2120 2120 129 226;227 1 ALYEAGER Unmodified 907.43995 0.43994572 1548 Q5TZZ9;P04083;B5BU38;B4DL19 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 2 1 1 29.193 29.569 2 0.004709 6626 20181213_JW_Orientia_Karp_2_2 127.02 55.329 137990000 40763000 42071000 10247000 12718000 7039800 5521400 16226000 3404600 538 1548 485 3234;3235;3236;3237;3238;3239;3240;3241;3242;3243;3244 2121;2122;2123;2124;2125;2126 2124 6 ALYESELADAR Unmodified 1236.5986 0.59863121 1044 J9JID7;Q03252 LMNB2 Lamin-B2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.638 44.938 2 0.0039211 15526 20181213_JW_Orientia_Karp_1_3 109.83 61.87 67410000 17710000 23534000 14521000 3268000 5190800 0 3186000 0 539 1044 486 3245;3246;3247;3248;3249;3250 2127 2127 1 ALYETELADAR Unmodified 1250.6143 0.61428128 1613 P20700;E9PBF6;Q6DC98 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 46.238 46.558 2 2.6646E-09 15626 20181213_JW_Orientia_Karp_3_1 202.2 113.38 217530000 57914000 59710000 41629000 18485000 12303000 10326000 4417100 12746000 540 1613 487 3251;3252;3253;3254;3255;3256;3257;3258 2128;2129;2130;2131 2131 4 ALYLTVK Unmodified 806.49019 0.49019038 1268 Karp_01076 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 44.353 44.646 2 0.01363 15963 20181213_JW_Orientia_Karp_1_1 114.72 37.347 387750000 258310000 81003000 32452000 4586800 2772700 2268400 6352600 0 541 1268 488 3259;3260;3261;3262;3263;3264;3265 2132;2133;2134;2135;2136 2132 5 ALYTFEPR Unmodified 995.50763 0.50763136 373 A8K646;Q92882 OSTF1 Osteoclast-stimulating factor 1 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 47.237 47.486 2 0.01658 16166 20181213_JW_Orientia_Karp_2_1 93.195 45.538 28550000 17503000 0 5934100 5112600 0 0 0 0 542 373 489 3266;3267;3268 2137 2137 1 AMAAEAEASR Oxidation (M) 1021.4499 0.44985848 160 B4E2V5;B4DZK8;A0A024R882;P27105 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 1 0 By MS/MS By MS/MS 1 1 17.276 17.5 2 0.0026478 2939 20181213_JW_Orientia_Karp_1_3 109.44 56.35 2735400 0 1749400 986040 0 0 0 0 0 543 160 490 3269;3270 2138;2139 2139 130 2 AMAAEAEASR Unmodified 1005.4549 0.45494386 160 B4E2V5;B4DZK8;A0A024R882;P27105 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 By MS/MS 1 23.367 23.617 2 0.031468 5200 20181213_JW_Orientia_Karp_1_2 89.08 43.064 0 0 0 0 0 0 0 0 0 544 160 490 3271 2140 2140 1 AMADELSEK Oxidation (M) 1008.4434 0.44337612 1766 Q2TNI1;Q03135;E9PCT5;A9XTE5;Q59E85 CAV1 Caveolin;Caveolin-1 yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 24.026 24.336 2 0.0027299 5458 20181213_JW_Orientia_Karp_1_2 112.41 50.304 25626000 4586200 8050400 5741000 1701600 2661200 0 0 2885800 545 1766 491 3272;3273;3274;3275;3276;3277 2141;2142 2141 1382 2 AMDSDWFAENYMGR 2 Oxidation (M) 1723.6607 0.6606559 1710 P55084-2;P55084;F5GZQ3;B4DDC9;B4DY96;B5MD38 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 2 0 By MS/MS By matching By matching 1 1 1 53.455 53.855 2 0.001951 21301 20181213_JW_Orientia_Karp_1_2 117.98 94.6 14554000 0 7755700 6348700 0 0 0 449710 0 546 1710 492 3278;3279;3280 2143 2143 1334;1335 1 AMDVYQK Oxidation (M) 869.3953 0.39530372 377 V9HW72;A8K690;P31948;P31948-2;P31948-3;H0YGI8 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 19.673 19.84 2 0.030312 3635 20181213_JW_Orientia_Karp_2_3 85.359 25.066 2433000 1594100 0 0 220000 0 618900 0 0 547 377 493 3281;3282;3283 2144 2144 1 AMEAVAAQGK Oxidation (M) 990.48043 0.48043033 1608 Q6P6D7;Q6FHU2;Q53G35;P18669;B4DMJ7;B4DKL5;Q0D2Q6;Q6FHK8;B7Z9E5;B4DJA4;A4D2J6;P15259;B7ZW15 PGAM1;hCG_2015269;PGAM2 Phosphoglycerate mutase;Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 18.083 18.366 2 0.00066454 3572 20181213_JW_Orientia_Karp_1_2 128.36 89.569 17437000 5341800 5634900 3681200 1403900 120670 0 1254300 0 548 1608 494 3284;3285;3286;3287;3288;3289 2145;2146;2147;2148;2149;2150;2151 2146 1229 7 AMEKLAAQQEEDAK Oxidation (M) 1576.7403 0.74028642 1371 Karp_02001 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 2 1 1 21.977 22.303 3 0.0006153 4838 20181213_JW_Orientia_Karp_1_1 149.32 102.1 181200000 22149000 97804000 16286000 10874000 8193500 9994500 9541400 6355500 549 1371 495 3290;3291;3292;3293;3294;3295;3296;3297;3298;3299 2152;2153;2154;2155;2156;2157;2158 2152 951 7 AMEKLAAQQEEDAK Unmodified 1560.7454 0.7453718 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 26.937 27.227 3 4.1847E-05 6682 20181213_JW_Orientia_Karp_1_2 164.93 109.83 110170000 27663000 48845000 26325000 0 0 1599800 5735800 0 550 1371 495 3300;3301;3302;3303;3304 2159;2160;2161;2162 2160 4 AMELQVAAER Unmodified 1116.5597 0.55974328 1104 Karp_00281 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 42.433 42.75 2 0.00075923 13709 20181213_JW_Orientia_Karp_3_1 129.16 71.196 250300000 114860000 64354000 49032000 4716200 0 3875300 13461000 0 551 1104 496 3305;3306;3307;3308;3309;3310 2163;2164;2165;2166;2167;2168 2168 6 AMELQVAAER Oxidation (M) 1132.5547 0.55465791 1104 Karp_00281 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 34.651 34.941 2 0.0006013 9974 20181213_JW_Orientia_Karp_3_1 129.89 66.073 183340000 47320000 45968000 51534000 0 18751000 0 19769000 0 552 1104 496 3311;3312;3313;3314;3315;3316 2169;2170;2171;2172;2173 2172 620 5 AMEQQKPPIYLVAPGR Oxidation (M) 1812.9556 0.95563935 1344 Karp_01520 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 46.89 47.21 3 0.025442 16695 20181213_JW_Orientia_Karp_1_3 88.561 54.259 163840000 39465000 31629000 37313000 14602000 7203600 15215000 483050 17931000 553 1344 497 3317;3318;3319;3320;3321;3322;3323;3324 2174;2175;2176;2177;2178;2179 2176 909 5 AMEVDERPTEQYSDIGGLDK Oxidation (M) 2268.0216 0.021606243 905 E9PM69;P17980;R4GNH3;A8K781;E9PN50;E9PMD8 PSMC3 26S protease regulatory subunit 6A yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 44.398 44.627 3 0.02354 15289 20181213_JW_Orientia_Karp_1_3 83.063 53.937 64989000 25171000 19517000 14792000 2553400 2956300 0 0 0 554 905 498 3325;3326;3327;3328;3329 2180;2181;2182;2183 2182 518 4 AMFDHLSYLLENSSVGLASPAMR 2 Oxidation (M);Deamidation (NQ) 2541.188 0.18796006 997 H7BY35;Q92736;Q92736-2 RYR2 Ryanodine receptor 2 yes no 0 1 2 0 By matching By matching By MS/MS By matching 1 1 1 1 64.874 65.039 3 0.016612 25662 20181213_JW_Orientia_Karp_2_3 59.975 14.06 55423000 29101000 0 10888000 0 0 10296000 0 5137400 555 997 499 3330;3331;3332;3333 2184 2184 364 552;553 1 AMGIMNSFVNDIFER 2 Oxidation (M);Deamidation (NQ) 1775.7859 0.78585641 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 1 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 6 5 3 4 4 6 67.401 67.596 2;3 1.4284E-134 27070 20181213_JW_Orientia_Karp_1_3 340.88 254 4706600000 1524700000 909930000 1336600000 105140000 162390000 81981000 321660000 264250000 556 449;1624;1817 500 3334;3335;3336;3337;3338;3339;3340;3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353;3354;3355;3356;3357;3358;3359;3360;3361;3362;3363;3364;3365;3366;3367;3368;3369;3370;3371;3372;3373;3374 2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195;2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228 2204 175;176 297;298 43 AMGIMNSFVNDIFER 2 Oxidation (M) 1774.8018 0.80184082 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 1 1 2 2 2 65.412 65.59 2;3 2.1181E-88 24785 20181213_JW_Orientia_Karp_3_2 296.17 143.49 4084200000 1132000000 1038000000 1158000000 2220300 161540000 105570000 310490000 176390000 557 449;1624;1817 500 3375;3376;3377;3378;3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392 2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240 2240 297;298 10 AMGIMNSFVNDIFER 2 Oxidation (M);2 Deamidation (NQ) 1776.7699 0.76987199 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 2 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 2 2 3 2 68.027 68.204 2 1.3825E-37 32608 20181213_JW_Orientia_Karp_1_1 244.72 164.7 1291800000 332840000 298620000 376960000 11056000 37103000 20761000 138530000 75952000 558 449;1624;1817 500 3393;3394;3395;3396;3397;3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408;3409 2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263 2242 175;176 297;298 22 AMGIMNSFVNDIFER Oxidation (M);Deamidation (NQ) 1759.7909 0.79094179 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 6 6 6 3 6 5 71.924 72.023 2 3.3355E-62 25364 20181213_JW_Orientia_Karp_3_1 277.11 218.48 7268600000 2873200000 1271800000 1812400000 75862000 113890000 48121000 796660000 276660000 559 449;1624;1817 500 3410;3411;3412;3413;3414;3415;3416;3417;3418;3419;3420;3421;3422;3423;3424;3425;3426;3427;3428;3429;3430;3431;3432;3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3444;3445;3446;3447;3448;3449;3450;3451;3452;3453 2264;2265;2266;2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277;2278;2279;2280;2281;2282;2283;2284;2285;2286;2287;2288;2289;2290;2291;2292;2293;2294;2295;2296 2290 175;176 297;298 32 AMGIMNSFVNDIFER Oxidation (M) 1758.8069 0.8069262 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 3 2 3 2 70.129 70.277 2 7.5193E-114 24568 20181213_JW_Orientia_Karp_3_1 327.06 245.53 11949000000 3849400000 3117000000 2780000000 180690000 235670000 163740000 1216300000 406000000 560 449;1624;1817 500 3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466;3467;3468;3469;3470;3471;3472;3473;3474 2297;2298;2299;2300;2301;2302;2303;2304;2305;2306;2307;2308;2309;2310;2311;2312;2313;2314;2315 2313 297;298 19 AMGIMNSFVNDIFER Oxidation (M);2 Deamidation (NQ) 1760.775 0.77495737 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 2 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 3 2 71.713 71.797 2 1.5551E-37 32129 20181213_JW_Orientia_Karp_1_3 249.98 186.12 1630100000 463430000 479740000 533530000 3339000 12771000 13018000 104760000 19566000 561 449;1624;1817 500 3475;3476;3477;3478;3479;3480;3481;3482;3483;3484;3485;3486;3487;3488;3489 2316;2317;2318;2319;2320;2321;2322;2323;2324;2325 2318 175;176 297;298 7 AMGIMNSFVNDIFER Deamidation (NQ) 1743.796 0.79602716 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 2 2 3 2 2 73.961 74.003 2 8.7187E-114 33766 20181213_JW_Orientia_Karp_1_2 329.67 252 3706900000 1540200000 1160500000 880820000 9041300 9007900 15420000 39730000 52121000 562 449;1624;1817 500 3490;3491;3492;3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508 2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337 2329 175;176 12 AMGIMNSFVNDIFER Unmodified 1742.812 0.81201158 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 73.649 73.692 2 1.4951E-113 29832 20181213_JW_Orientia_Karp_3_2 323.44 204.41 5070300000 1870300000 1930400000 904190000 20073000 32738000 0 188020000 124540000 563 449;1624;1817 500 3509;3510;3511;3512;3513;3514;3515;3516 2338;2339;2340;2341;2342;2343;2344;2345 2345 8 AMGIMNSFVNDIFER 2 Deamidation (NQ) 1744.78 0.78004275 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 2 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 73.835 73.864 2 4.9846E-05 33909 20181213_JW_Orientia_Karp_1_3 161.87 123.9 665400000 270770000 170330000 216300000 754510 0 0 7245100 0 564 449;1624;1817 500 3517;3518;3519;3520;3521 2346 2346 175;176 1 AMGNLQIDFADPSR Oxidation (M) 1549.7195 0.7194914 1555 P04899;P04899-4;B3KP24;B3KX51;Q96C71;P04899-6;P04899-3;P04899-5;P04899-2;Q93020 GNAI2;WUGSC:H_LUCA16.1 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 1 0 By MS/MS 1 55.126 55.126 2 0.002978 22554 20181213_JW_Orientia_Karp_1_1 115.57 70.497 11846000 11846000 0 0 0 0 0 0 0 565 1555 501 3522 2347 2347 1168 1 AMGVDEDLAHTSLR Oxidation (M) 1529.7144 0.71440603 1276 Karp_01108 yes yes 0 0 1 0 By MS/MS 1 39.39 39.939 3 0.0061759 12117 20181213_JW_Orientia_Karp_2_1 101.53 47.19 23073000 0 0 0 23073000 0 0 0 0 566 1276 502 3523 2348;2349 2348 839 2 AMQEQLENYDFTK Oxidation (M) 1631.7137 0.71373732 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 45.875 46.117 2 9.6178E-25 16136 20181213_JW_Orientia_Karp_1_3 227.48 145.96 85847000 22011000 23356000 28731000 0 7092100 0 0 4655700 567 185 503 3524;3525;3526;3527;3528;3529;3530 2350;2351;2352;2353;2354;2355 2352 140 6 AMQEQLENYDFTK Unmodified 1615.7188 0.7188227 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 50.774 50.957 2 1.2449E-45 19248 20181213_JW_Orientia_Karp_1_3 264.3 192.8 86951000 30128000 32872000 23951000 0 0 0 0 0 568 185 503 3531;3532;3533;3534;3535 2356;2357;2358;2359;2360 2358 5 AMQNYAGVFR Oxidation (M) 1171.5444 0.54442757 1427 Karp_02373 yes yes 0 0 1 0 By MS/MS By matching 1 1 40.534 40.808 2 0.0021538 13388 20181213_JW_Orientia_Karp_1_2 112.41 62.284 16931000 0 6447500 10484000 0 0 0 0 0 569 1427 504 3536;3537 2361 2361 1024 1 AMTMEINAGR 2 Oxidation (M) 1124.4954 0.49542847 1427 Karp_02373 yes yes 0 0 2 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 24.178 24.515 2 0.0035754 5169 20181213_JW_Orientia_Karp_2_1 101.65 66.028 7190300 0 0 1987000 1418700 0 1465800 2318700 0 570 1427 505 3538;3539;3540;3541 2362;2363 2363 1025;1026 2 AMVSEFLK Acetyl (Protein N-term);Oxidation (M) 981.48412 0.48411873 1548 Q5TZZ9;P04083;B5BU38;Q5T3N0 ANXA1 Annexin;Annexin A1 yes no 1 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 65.83 66.074 2 0.0018321 26156 20181213_JW_Orientia_Karp_2_3 138.83 67.53 72327000 13629000 9171000 5317700 50405 7673800 0 9302700 27183000 571 1548 506 3542;3543;3544;3545;3546;3547;3548;3549 2364;2365;2366;2367;2368;2369;2370;2371 2368 1151 8 AMVSEFLK Acetyl (Protein N-term) 965.4892 0.4892041 1548 Q5TZZ9;P04083;B5BU38;Q5T3N0 ANXA1 Annexin;Annexin A1 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 74.681 74.697 2 0.0045769 34748 20181213_JW_Orientia_Karp_1_1 122.74 66.62 33602000 14239000 8876100 10487000 0 0 0 0 0 572 1548 506 3550;3551;3552 2372;2373;2374;2375 2372 4 AMWGTAR Oxidation (M) 807.36976 0.36975767 1227 Karp_00894 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 25.462 25.839 2 0.024701 5035 20181213_JW_Orientia_Karp_2_2 89.903 12.529 48243000 10813000 0 8381500 5699200 8303400 0 8945600 6100800 573 1227 507 3553;3554;3555;3556;3557;3558 2376 2376 790 1 AMYLPDTLSPADQLK Unmodified 1661.8335 0.83345853 840 D3DVQ1;O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 63.638 63.903 2 0.033484 27715 20181213_JW_Orientia_Karp_1_2 74.326 49.983 31870000 5039800 6989700 0 0 18104000 0 493160 1243300 574 840 508 3559;3560;3561;3562;3563 2377 2377 1 ANAVAYLDLINEIAMHK Oxidation (M) 1900.9717 0.97168334 1449 Karp_02529 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.842 70.942 3 0.00095961 25595 20181213_JW_Orientia_Karp_3_1 116.87 85.763 140390000 45469000 24520000 0 0 16088000 10938000 43378000 0 575 1449 509 3564;3565;3566;3567;3568;3569 2378;2379;2380;2381;2382;2383 2383 1049 6 ANDDIIVNWVNR Deamidation (NQ) 1428.6997 0.69974224 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;B4DG31;A7E2S2;B4DI60 PLS3 Plastin-3 yes no 0 1 0 0 By MS/MS 1 68.096 68.294 2 0.028636 30126 20181213_JW_Orientia_Karp_1_3 88.596 50.628 6292600 0 0 6292600 0 0 0 0 0 576 623 510 3570 2384 2384 218 1 ANDQDLSNPK Unmodified 1100.5098 0.5098162 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS 1 22.495 22.495 2 0.015703 5072 20181213_JW_Orientia_Karp_1_1 107.55 47.624 0 0 0 0 0 0 0 0 0 577 1428 511 3571 2385 2385 1 ANEWLMK Oxidation (M);Deamidation (NQ) 907.41095 0.41095378 919 F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4;M0QY43;B3KWH4 MYH14 Myosin-14 yes no 0 1 1 0 By MS/MS 1 38.338 38.537 2 0.035355 12110 20181213_JW_Orientia_Karp_1_3 120.46 13.14 16861000 0 0 16861000 0 0 0 0 0 578 919 512 3572 2386 2386 0 ANIQAVSLK Unmodified 942.54983 0.54983053 100 M0R1L7;A0A024R4S0;O43633;M0R1T5 CHMP2A Charged multivesicular body protein 2a yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 38.583 38.766 2 0.0015887 12082 20181213_JW_Orientia_Karp_1_3 123.35 40.09 34583000 13114000 10334000 11136000 0 0 0 0 0 579 100 513 3573;3574;3575 2387;2388 2388 2 ANITEDIQAVYAEAK Unmodified 1634.8152 0.81516593 1191 Karp_00710 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 59.591 59.872 2;3 2.0959E-134 23079 20181213_JW_Orientia_Karp_2_3 340.85 276.19 3023900000 878660000 546810000 723600000 110450000 294240000 367850000 102340000 0 580 1191 514 3576;3577;3578;3579;3580;3581;3582;3583;3584;3585;3586;3587;3588;3589 2389;2390;2391;2392;2393;2394;2395;2396;2397;2398;2399;2400 2397 11 ANITEDIQAVYAEAK Deamidation (NQ) 1635.7992 0.79918151 1191 Karp_00710 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 2 1 1 1 2 1 2 65.895 66.127 2 1.4884E-08 27311 20181213_JW_Orientia_Karp_1_3 187.97 135.28 80030000 25080000 25819000 14468000 1409700 2482800 3570900 2836900 4362700 581 1191 514 3590;3591;3592;3593;3594;3595;3596;3597;3598;3599;3600 2401;2402;2403;2404;2405 2404 603 4 ANKNGVSGGIISK Deamidation (NQ) 1244.6725 0.67246486 1231 Karp_00898 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 27.5 27.885 3 0.0047095 7008 20181213_JW_Orientia_Karp_1_3 103.13 53.027 28986000 13040000 7461500 0 1833200 0 1565700 3568700 1516800 582 1231 515 3601;3602;3603;3604;3605;3606;3607 2406;2407;2408;2409;2410;2411;2412 2408 634 7 ANLEAFTVDK Unmodified 1106.5608 0.56078914 834 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1VPF7;M1VRN0;M1VKI9;M1VE89;M1V481 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12;KIF5B-ALK_K17;A20 Kinesin-like protein;Kinesin-1 heavy chain yes no 0 0 0 0 By MS/MS 1 46.917 47.267 2 0.0085502 16964 20181213_JW_Orientia_Karp_1_2 96.015 28.983 17602000 0 17602000 0 0 0 0 0 0 583 834 516 3608 2413 2413 1 ANLPQSFQVDTSK Unmodified 1433.7151 0.71505795 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 47.166 47.468 2 3.0336E-11 16027 20181213_JW_Orientia_Karp_3_1 198.97 143.51 385050000 2747900 159550000 144670000 0 13267000 20351000 11681000 32774000 584 1615 517 3609;3610;3611;3612;3613;3614;3615 2414;2415 2414 2 ANLQIDQINTDLNLER Unmodified 1868.9592 0.9592044 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 61.7 61.943 2;3 1.9616E-156 26269 20181213_JW_Orientia_Karp_1_3 352.08 275.15 700440000 318160000 15802000 178770000 0 85400000 64527000 0 37784000 585 47 518 3616;3617;3618;3619;3620;3621;3622;3623;3624;3625;3626;3627 2416;2417;2418;2419;2420;2421 2417 6 ANLQIDQINTDLNLER Deamidation (NQ) 1869.9432 0.94321999 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 63.411 63.55 2 1.6959E-49 26846 20181213_JW_Orientia_Karp_1_2 268.93 186.44 53924000 24406000 21914000 7604300 0 0 0 0 0 586 47 518 3628;3629;3630;3631;3632;3633 2422;2423;2424;2425;2426;2427 2424 11;12;13 6 ANLQIDQINTDLNLER 2 Deamidation (NQ) 1870.9272 0.92723557 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 2 0 0 By MS/MS 1 63.831 63.93 2 8.1678E-05 27532 20181213_JW_Orientia_Karp_1_3 152 98.99 12252000 0 0 12252000 0 0 0 0 0 587 47 518 3634 2428 2428 11;12;13 1 ANLSLLR Unmodified 785.47594 0.4759373 1622 Q9BSV4;Q86VG2;P23246;P23246-2;Q6PIX2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 43.779 44.042 2 0.029329 15151 20181213_JW_Orientia_Karp_1_2 90.37 5.4543 72315000 27728000 28316000 0 14461000 0 1810300 0 0 588 1622 519 3635;3636;3637;3638 2429 2429 1 ANLTNSSFVAANMSR Oxidation (M) 1597.7519 0.75185416 1162 Karp_00605 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 41.533 41.7 2 1.6846E-27 14326 20181213_JW_Orientia_Karp_1_1 231.07 159.46 17938000 8698600 7982400 0 0 1257100 0 0 0 589 1162 520 3639;3640;3641;3642;3643 2430;2431;2432 2430 693 3 ANLTNSSFVAANMSR Unmodified 1581.7569 0.75693954 1162 Karp_00605 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 47.839 48.201 2 5.0833E-05 17330 20181213_JW_Orientia_Karp_1_3 157.33 94.261 29554000 5045800 13350000 8541600 0 0 0 341530 2275800 590 1162 520 3644;3645;3646;3647;3648 2433 2433 1 ANNGDAWVEANGNK 2 Deamidation (NQ) 1460.6168 0.61680047 1074 Karp_00050 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 3 3 4 3 2 2 41.263 41.574 2 3.1856E-05 13162 20181213_JW_Orientia_Karp_1_2 174.21 133.09 302780000 82394000 57745000 78712000 33536000 5289200 9288000 28524000 7293200 591 1074 521 3649;3650;3651;3652;3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663;3664;3665;3666;3667;3668;3669;3670 2434;2435;2436;2437;2438;2439;2440;2441;2442;2443;2444 2435 408;409;410 9 ANPPAGFAIHNHEQWR Unmodified 1843.8866 0.88664858 1371 Karp_02001 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 4 36.404 36.754 2;4 0.008843 10789 20181213_JW_Orientia_Karp_3_1 86.738 60.76 47737000000 21042000000 11256000000 11866000000 60789000 0 412670000 3100700000 0 592 1371 522 3671;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688;3689 2445;2446;2447;2448;2449;2450;2451 2450 5 ANPPAGFAIHNHEQWR Deamidation (NQ) 1844.8707 0.87066417 1371 Karp_02001 yes yes 0 1 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 2 2 2 1 40.846 41.144 2;3 2.7365E-06 13444 20181213_JW_Orientia_Karp_2_1 173.19 113.82 1480300000 527760000 355140000 360370000 27199000 59887000 18758000 125050000 6097700 593 1371 522 3690;3691;3692;3693;3694;3695;3696;3697;3698;3699;3700;3701;3702;3703 2452;2453;2454 2453 835 3 ANPSPPIGPALGQR Unmodified 1373.7415 0.74154747 1174 Karp_00628 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.663 46.983 2 0.00091914 15804 20181213_JW_Orientia_Karp_2_1 137.4 110.72 1506600000 556190000 297930000 238240000 110670000 66001000 131190000 19167000 87189000 594 1174 523 3704;3705;3706;3707;3708;3709;3710;3711 2455;2456;2457;2458;2459;2460;2461;2462 2458 8 ANQVAGNSQIAQDYYK Unmodified 1768.838 0.83802663 1343 Karp_01518 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 40.566 40.969 2 1.2791E-49 13207 20181213_JW_Orientia_Karp_1_3 267.93 165.95 8100900 0 0 4609900 0 0 946340 1824100 720560 595 1343 524 3712;3713;3714;3715;3716 2463;2464;2465;2466 2463 4 ANTTAFLTPLEIK Unmodified 1417.7817 0.78168095 2018 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.653 63.886 2 1.438E-11 25256 20181213_JW_Orientia_Karp_2_1 205.07 130.54 33337000 8990700 3659200 3530700 1242900 8965900 4968000 101480 1877900 596 2018 525 3717;3718;3719;3720;3721;3722;3723;3724 2467;2468;2469;2470 2467 4 ANVGEWR Unmodified 830.4035 0.40350064 1288 Karp_01160 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 31.45 31.796 2 0.037976 8063 20181213_JW_Orientia_Karp_2_1 84.498 36.755 26554000 4145500 14901000 3485200 1528400 707480 0 1786400 0 597 1288 526 3725;3726;3727;3728;3729;3730 2471 2471 1 ANVPENIYSDNEPLYSNTDEFR Unmodified 2586.151 0.15104051 1150 Karp_00511 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 59.985 60.281 2;3 9.22E-12 25188 20181213_JW_Orientia_Karp_1_3 164.8 128.91 738570000 122390000 80171000 90717000 119900000 172580000 152240000 0 562360 598 1150 527 3731;3732;3733;3734;3735;3736;3737;3738;3739;3740 2472;2473;2474;2475;2476;2477;2478;2479;2480 2476 9 ANVPENIYSDNEPLYSNTDEFR Deamidation (NQ) 2587.1351 0.1350561 1150 Karp_00511 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 62.577 62.813 2;3 5.2154E-06 26708 20181213_JW_Orientia_Karp_1_2 141.1 86.758 105750000 21462000 33229000 30973000 1590000 10465000 4845600 0 3188000 599 1150 527 3741;3742;3743;3744;3745;3746;3747;3748;3749;3750 2481;2482;2483;2484;2485 2482 540;541 5 ANVTVLDTQIR Unmodified 1228.6776 0.67755023 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14;Q9NZM1-5 MYOF Myoferlin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 47.826 48.22 2 0.0011065 17334 20181213_JW_Orientia_Karp_1_3 127.83 70.484 47159000 0 18570000 16875000 4318400 1545000 1952000 32868 3864700 600 1991 528 3751;3752;3753;3754;3755;3756;3757 2486 2486 1 ANWEAQQR Unmodified 1001.4679 0.46789181 2 B4DNE4;G3V1Q4;B4DPQ6;A0A023T695;B4DUD6;Q8TC62;Q3LIE9;A4GYY8;E7ES33;E7EPK1;A8K3D0;Q16181-2;Q16181;A4D1Y2;Q5JXL7 SEPT7;Nbla02942;DKFZp686F17268;LOC392884;DKFZp586I031 Septin-7 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 24.751 25.064 2 0.018329 5800 20181213_JW_Orientia_Karp_1_2 90.37 53.609 9423700 2235600 4580700 0 0 907660 0 1699700 0 601 2 529 3758;3759;3760;3761 2487 2487 1 APAMFNIR Oxidation (M) 934.46947 0.46947171 363 H0Y9Y4;D6RG13;Q6NXR8;A8K4W0;P61247;B7Z3M5;H0Y8L7;E9PFI5;D6RI02 RPS3A 40S ribosomal protein S3a yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 38.875 39.208 2 0.01125 11855 20181213_JW_Orientia_Karp_2_1 98.133 57.212 44257000 9790100 14568000 13064000 2432000 0 859650 3543000 0 602 363 530 3762;3763;3764;3765;3766;3767 2488;2489;2490 2489 251 3 APAMVHIPLIYGPDGTK Unmodified 1778.9389 0.93892665 1383 Karp_02122 yes yes 0 0 0 0 By MS/MS 1 59.761 59.96 3 0.0086994 25025 20181213_JW_Orientia_Karp_1_3 93.716 67.592 0 0 0 0 0 0 0 0 0 603 1383 531 3768 2491 2491 1 APAPASAPPGPSEELLR Unmodified 1658.8628 0.86278482 2019 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 50.178 50.498 2 0.023051 17018 20181213_JW_Orientia_Karp_3_1 81.278 62.035 13866000 0 3276200 3816600 0 1870800 1650500 3251700 0 604 2019 532 3769;3770;3771;3772;3773 2492;2493 2493 2 APASEEEFQFLR Unmodified 1422.6779 0.67794416 1640 P29590-4;P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;Q9BZY1;H3BT57;Q59H09;Q15156;P29590-14;P29590-10;P29590-12;P29590-13;P29590-11;B4DV67 PML;PML-RAR Protein PML yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 56.203 56.576 2 1.7192E-05 23147 20181213_JW_Orientia_Karp_1_2 175.65 135.71 130270000 29675000 36346000 35890000 12812000 0 10352000 3291700 1904600 605 1640 533 3774;3775;3776;3777;3778;3779;3780 2494;2495;2496 2495 3 APDEETLIALLAHAK Unmodified 1590.8617 0.86172219 1033 Q96ME4;J3KQ48;Q9Y3E5 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 1 66.589 66.589 3 0.0027148 29704 20181213_JW_Orientia_Karp_1_1 129.76 100.97 6136300 6136300 0 0 0 0 0 0 0 606 1033 534 3781;3782 2497;2498 2497 2 APDFVFYAPR Unmodified 1181.5869 0.58694431 1630;457 V9HWC0;P26038;Q6PJT4;Q6PKD3;Q05CU6;B0YJ88;P35241;P35241-5;Q9UJZ6;Q9UK20;B7Z2S7;P35241-4;Q9UJU1;Q9UJZ2;Q9UJZ8;E7EQR4;Q6NUR7;B2R6J2;P15311;B7Z437;B7Z5V2;V9HW42;J7M2B1 HEL70;MSN;RDX;VIL2;EZR;HEL-S-105;EZR-ROS1 Moesin;Radixin;Ezrin;Tyrosine-protein kinase receptor no no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 60.375 60.625 2 0.014235 23517 20181213_JW_Orientia_Karp_2_3 90.906 52.338 47298000 13052000 6964800 14319000 1392200 4141000 7429200 0 0 607 1630;457 535 3783;3784;3785;3786;3787;3788 2499;2500;2501 2501 3 APDMSSSEEFPSFGAQVAPK Unmodified 2080.9412 0.94117108 92 B2R5V9;A0A024R4E5;Q00341;H0Y394;Q00341-2;Q6ZS03;Q96CF6;Q2HJC8 HDLBP Vigilin yes no 0 0 0 0 By MS/MS 1 60.454 60.804 2 0.0023692 25852 20181213_JW_Orientia_Karp_1_2 118.16 88.948 0 0 0 0 0 0 0 0 0 608 92 536 3789 2502 2502 1 APDVDVNIAGPDAALK Unmodified 1564.8097 0.80968662 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 56.391 56.749 2 1.1074E-21 23151 20181213_JW_Orientia_Karp_1_2 225.72 151.56 272240000 80200000 58848000 68479000 19535000 26507000 15670000 281470 2716400 609 1782 537 3790;3791;3792;3793;3794;3795;3796;3797 2503;2504;2505;2506;2507;2508;2509 2504 7 APDVEGQGLDWSLK Unmodified 1513.7413 0.7412727 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 58.919 59.212 2 1.6566E-17 24779 20181213_JW_Orientia_Karp_1_2 215.77 143.67 201910000 46190000 77136000 27478000 11541000 21885000 15827000 1854200 0 610 1782 538 3798;3799;3800;3801;3802;3803;3804 2510;2511;2512;2513;2514;2515;2516 2511 7 APEAMKEVVPEMK 2 Oxidation (M) 1489.7157 0.71565158 1925 Q8WZ42-12 TTN Titin yes yes 0 0 2 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 28.888 29.205 3 0.038541 7045 20181213_JW_Orientia_Karp_3_1 42.475 13.26 115990000 19282000 0 16384000 4642400 7602300 13050000 55034000 0 611 1925 539 3805;3806;3807;3808;3809;3810 2517 2517 0 APEAWDYGQGFVNEEMIR Oxidation (M) 2126.9368 0.9367544 102 A0A024R4X0;P00387-2;P00387;P00387-3;Q6ZVI6 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 61.348 61.598 2 6.4092E-09 26342 20181213_JW_Orientia_Karp_1_2 168.67 128.16 37919000 11961000 10057000 9924000 1565500 4411500 0 0 0 612 102 540 3811;3812;3813;3814;3815 2518;2519;2520;2521 2519 103 4 APEAWDYGQGFVNEEMIR Unmodified 2110.9418 0.94183978 102 A0A024R4X0;P00387-2;P00387;P00387-3;Q6ZVI6 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 66.483 66.599 2 3.9434E-09 29183 20181213_JW_Orientia_Karp_1_3 174.24 130.44 38797000 15104000 12043000 11650000 0 0 0 0 0 613 102 540 3816;3817;3818 2522;2523;2524 2524 3 APECFIIENK Unmodified 1219.5907 0.59070906 1336 Karp_01409 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.44 46.762 2 0.00093054 17040 20181213_JW_Orientia_Karp_1_1 125.71 48.18 102700000 36870000 0 47130000 0 0 9533600 459130 8703300 614 1336 541 3819;3820;3821;3822;3823;3824 2525;2526;2527 2525 3 APEDAGPQPGSYEIR Unmodified 1585.7372 0.73724996 1771 Q05DB4;Q9Y5Z4;Q5THN1 HEBP2 Heme-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 42.309 42.647 2 0.00023773 13560 20181213_JW_Orientia_Karp_2_1 146.67 102.25 35368000 13944000 0 0 8561000 0 1962400 10900000 0 615 1771 542 3825;3826;3827;3828;3829;3830 2528;2529;2530;2531;2532 2530 5 APEEPNIQVNPLGIPVNSK Unmodified 2015.0688 0.068754852 79 B2R642;A0A024R3I5;P43121;A8K6A6;B3KXZ9 MCAM Cell surface glycoprotein MUC18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 63.265 63.454 2 1.6645E-12 27695 20181213_JW_Orientia_Karp_1_1 195.6 141.4 85465000 35351000 14765000 25457000 393790 5699300 3799700 0 0 616 79 543 3831;3832;3833;3834;3835;3836 2533;2534;2535;2536;2537;2538 2533 6 APEEPNIQVNPLGIPVNSK Deamidation (NQ) 2016.0528 0.052770437 79 B2R642;A0A024R3I5;P43121;A8K6A6;B3KXZ9 MCAM Cell surface glycoprotein MUC18 yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 66.43 66.579 2 2.2834E-12 29634 20181213_JW_Orientia_Karp_1_1 187.75 144.72 39714000 15729000 12241000 10133000 1611200 0 0 0 0 617 79 543 3837;3838;3839;3840 2539;2540 2539 33 2 APEQEQAAPGPAAGGEAPK Unmodified 1774.8486 0.84859132 1751 P80723 BASP1 Brain acid soluble protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 32.208 32.588 2 0.00019633 9083 20181213_JW_Orientia_Karp_1_2 147.51 107.77 14846000 4675800 3126900 0 2053400 2180900 901040 1079200 828440 618 1751 544 3841;3842;3843;3844;3845;3846;3847 2541;2542 2542 2 APEVNLNAPDVDVHGPDWNLK Unmodified 2299.1233 0.12330962 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 59.475 59.874 3 5.6337E-08 25030 20181213_JW_Orientia_Karp_1_3 151.03 120.54 180110000 0 0 75713000 28259000 0 0 76136000 0 619 1782 545 3848;3849;3850 2543;2544;2545 2543 2 APGFAQMLK Oxidation (M) 977.50044 0.50043749 1695 Q53HU0;P50990 CCT8 T-complex protein 1 subunit theta yes no 0 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 37.928 38.328 2 0.035762 11574 20181213_JW_Orientia_Karp_3_1 71.296 28.172 19644000 0 6780900 8357000 1190600 0 520890 2794300 0 620 1695 546 3851;3852;3853;3854;3855 2546 2546 1 APGFGDR Unmodified 718.33984 0.33983775 1296 Karp_01187 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 26.326 26.791 2 0.033742 5310 20181213_JW_Orientia_Karp_3_2 86.866 19.873 128450000 0 55832000 0 13738000 31847000 0 0 27034000 621 1296 547 3856;3857;3858;3859 2547;2548 2548 2 APGIIPR Unmodified 722.44391 0.44390889 1628 V9HW26;P25705-2;P25705;P25705-3;K7EK77;B4DGW3;K7ENJ4;K7ERX7;K7EJP1 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.036 37.32 2 0.022267 10351 20181213_JW_Orientia_Karp_2_2 99.511 28.444 65369000 35621000 9044400 7656600 0 3750100 4914100 4382700 0 622 1628 548 3860;3861;3862;3863;3864;3865;3866 2549;2550;2551;2552;2553;2554;2555 2551 7 APIHFTIEK Unmodified 1054.5811 0.58113065 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;A0A075B727;A0A075B728 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 39.022 39.373 3 0.0052311 11547 20181213_JW_Orientia_Karp_2_2 104.01 75.932 4685600 0 0 0 0 3541500 775550 368570 0 623 274 549 3867;3868;3869 2556 2556 1 APIIAVTR Unmodified 839.52289 0.52288749 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 41.337 41.63 2 0.008381 13063 20181213_JW_Orientia_Karp_2_1 109.01 48.214 557330000 257630000 103520000 130960000 5513000 14052000 12886000 32763000 0 624 1597 550 3870;3871;3872;3873;3874;3875;3876;3877 2557;2558;2559;2560;2561;2562 2560 6 APILIATDVASR Unmodified 1225.703 0.7030367 1929 Q92841;H3BLZ8;Q59F66;Q92841-1;Q92841-3;Q92841-2;B4DZQ7;Q7Z2V5;Q59E92;B4DNG2;B4DN41;J3KTA4;B5BUE6;P17844-2;P17844 DDX17;DKFZp686J01190;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 53.773 54.088 2 2.8955E-05 21496 20181213_JW_Orientia_Karp_1_2 172.56 132.91 102370000 36845000 22756000 30953000 3494100 2610700 5315400 0 391930 625 1929 551 3878;3879;3880;3881;3882;3883;3884 2563;2564;2565;2566;2567 2564 5 APIPWAHLDIASVAWNK Unmodified 1887.9996 0.99955308 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 68.013 68.203 2;3 1.0043E-06 30401 20181213_JW_Orientia_Karp_1_2 153.41 117.89 709230000 155320000 128970000 108460000 7292700 125210000 69291000 48984000 65701000 626 1349 552 3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897;3898 2568;2569;2570;2571;2572;2573;2574;2575 2569 8 APIRPDIVNFVHTNLR Unmodified 1861.0323 0.032250187 1660 Q59GY2;P36578;B4DMJ6;H3BU31;B4DFI6;B4DP82;H3BTP7 RPL4 60S ribosomal protein L4 yes no 0 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 2 52.584 52.917 3;4 0.02727 20592 20181213_JW_Orientia_Karp_1_3 56.339 39.271 149390000 13335000 59132000 51435000 10065000 6392900 7418300 1609500 0 627 1660 553 3899;3900;3901;3902;3903;3904;3905;3906;3907 2576;2577 2576 2 APISPETHAHNVTSIK Unmodified 1700.8846 0.8845829 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 2 1 29.321 29.587 3;4 0.020878 7654 20181213_JW_Orientia_Karp_1_2 103.66 59.231 618070000 177020000 282420000 23299000 50246000 0 38000000 0 47090000 628 1266 554 3908;3909;3910;3911;3912;3913;3914;3915;3916;3917 2578;2579;2580;2581;2582 2580 5 APKPDGPGGGPGGSHMGGNYGDDR Oxidation (M) 2267.9614 0.96140602 359 Q59H57;B4DR70;A8K4H1;Q8TBR3;Q6IBQ5;H3BPE7;Q13344;P35637-2;P35637 FUS RNA-binding protein FUS yes no 0 0 1 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 23.184 23.606 4 0.018694 4794 20181213_JW_Orientia_Karp_2_3 53.278 19.611 33381000 0 282980 0 10981000 0 7851900 5648900 8616600 629 359 555 3918;3919;3920;3921;3922 2583;2584 2584 250 2 APKPEDIDEEDDDVPDLVENFDEASK Unmodified 2930.2829 0.28290212 1870 Q6PJ77;Q96K17;Q96K17-2 BTF3L4 Transcription factor BTF3;Transcription factor BTF3 homolog 4 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 63.262 63.538 3 4.3159E-18 27117 20181213_JW_Orientia_Karp_1_3 166.65 141.5 154110000 0 36670000 52960000 2144200 26959000 23982000 0 11395000 630 1870 556 3923;3924;3925;3926;3927;3928 2585 2585 1 APLATGEDDDDEVPDLVENFDEASK Unmodified 2690.1719 0.17189511 1610 P20290-2;P20290 BTF3 Transcription factor BTF3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1 2 1 71.01 71.12 2;3 3.0975E-06 31994 20181213_JW_Orientia_Karp_1_3 181.81 132.75 272020000 76589000 43440000 36277000 0 40647000 14443000 50690000 9935200 631 1610 557 3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939 2586;2587;2588;2589;2590;2591 2588 6 APLDIPVPDPVK Unmodified 1259.7125 0.71253876 1772 Q6FHU3;Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.496 63.753 2 0.00061681 27702 20181213_JW_Orientia_Karp_1_2 145.99 109.67 149900000 50562000 18400000 31731000 4282400 17860000 16763000 417910 9888900 632 1772 558 3940;3941;3942;3943;3944;3945;3946;3947 2592;2593;2594;2595;2596;2597;2598;2599 2593 8 APLQVAVLGPTGVAEPVEVR Unmodified 2001.1259 0.1258758 1797 Q14315-2;Q14315;Q59H94 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 66.608 66.798 2 0.014847 29804 20181213_JW_Orientia_Karp_1_1 94.454 76.789 36651000 14763000 9712900 10426000 0 0 0 0 1748800 633 1797 559 3948;3949;3950;3951 2600;2601;2602 2600 3 APNISMPDVDLNLK Unmodified 1525.781 0.78102903 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 63.977 64.16 2 0.00051415 27611 20181213_JW_Orientia_Karp_1_3 145.83 110.16 87230000 28206000 25485000 14700000 0 10974000 6338200 1525400 0 634 1782 560 3952;3953;3954;3955;3956;3957;3958;3959 2603;2604;2605;2606;2607;2608;2609;2610 2605 8 APNISMPDVDLNLK Oxidation (M) 1541.7759 0.77594365 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 55.145 55.412 2 0.0075514 20444 20181213_JW_Orientia_Karp_2_1 99.669 57.458 73226000 16653000 15729000 15237000 3411600 13441000 8753500 0 0 635 1782 560 3960;3961;3962;3963;3964;3965 2611;2612 2611 1388 2 APNSMASLTDPNQMQQLFTPLQR 5 Deamidation (NQ) 2592.1724 0.17236958 2024 yes no 0 5 0 0 By MS/MS 1 79.186 79.235 2 0.042987 37561 20181213_JW_Orientia_Karp_1_2 78.985 18.049 0 0 0 0 0 0 0 0 0 + 636 2024 561 3966 2613 2613 2119 1 APNSMASLTDPNQMQQLFTPLQR 4 Deamidation (NQ) 2591.1884 0.18835399 2024 yes no 0 4 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 80.611 80.56 2 0.042987 37844 20181213_JW_Orientia_Karp_1_2 108.23 29.725 1121000000 627540000 13622000 371450000 104310000 4052700 0 0 0 + 637 2024 561 3967;3968;3969;3970;3971 2614;2615 2614 2119 0 APNTPASGANGDGSMSQTQSGSTVK Oxidation (M);Deamidation (NQ) 2366.0292 0.029210816 801 CON__P15636 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 11 9 13 11 8 11 7 30.003 30.367 2;3;4 3.7951E-69 9630 20181213_JW_Orientia_Karp_1_3 260.44 222.26 8033200000 1045800000 1384900000 3616100000 638140000 430890000 83502000 557400000 276470000 + 638 801 562 3972;3973;3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993;3994;3995;3996;3997;3998;3999;4000;4001;4002;4003;4004;4005;4006;4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032;4033;4034;4035;4036;4037;4038;4039;4040;4041;4042;4043;4044;4045;4046;4047;4048;4049;4050;4051;4052 2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637;2638;2639;2640;2641;2642;2643;2644;2645;2646;2647;2648;2649 2628 284;285;1653;1654 466 34 APNTPASGANGDGSMSQTQSGSTVK Oxidation (M) 2365.0452 0.045195231 801 CON__P15636 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 3 1 2 2 26.07 26.414 2;3 1.115E-118 6336 20181213_JW_Orientia_Karp_2_1 308.24 255.11 3791000000 633270000 519690000 309300000 866730000 346550000 765930 797070000 317630000 + 639 801 562 4053;4054;4055;4056;4057;4058;4059;4060;4061;4062;4063;4064;4065;4066;4067;4068 2650;2651;2652;2653;2654;2655;2656;2657;2658;2659;2660;2661;2662 2656 466 13 APNTPASGANGDGSMSQTQSGSTVK Deamidation (NQ) 2350.0343 0.034296194 801 CON__P15636 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 7 8 9 4 4 6 4 33.811 34.146 2;3 3.133E-138 9572 20181213_JW_Orientia_Karp_1_3 318.94 250.68 26101000000 10457000000 4188600000 5567000000 1885000000 1463200000 1054500000 1052400000 432980000 + 640 801 562 4069;4070;4071;4072;4073;4074;4075;4076;4077;4078;4079;4080;4081;4082;4083;4084;4085;4086;4087;4088;4089;4090;4091;4092;4093;4094;4095;4096;4097;4098;4099;4100;4101;4102;4103;4104;4105;4106;4107;4108;4109;4110;4111;4112;4113;4114;4115;4116;4117;4118;4119 2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;2674;2675;2676;2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694 2672 284;285;1653;1654 30 APNTPASGANGDGSMSQTQSGSTVK Oxidation (M);2 Deamidation (NQ) 2367.0132 0.013226401 801 CON__P15636 yes yes 0 2 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 5 3 2 3 3 3 2 30.107 30.448 2;3 3.8863E-29 8540 20181213_JW_Orientia_Karp_1_2 204.51 175.87 11809000000 3033400000 2750200000 284410000 1486600000 1829000000 684150000 1073800000 667240000 + 641 801 562 4120;4121;4122;4123;4124;4125;4126;4127;4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143;4144 2695;2696;2697;2698;2699;2700;2701;2702;2703;2704;2705;2706;2707;2708;2709 2697 284;285;1653;1654 466 13 APNTPASGANGDGSMSQTQSGSTVK Unmodified 2349.0503 0.050280609 801 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 4 2 32.05 32.394 2;3 3.2738E-15 8337 20181213_JW_Orientia_Karp_2_1 180.68 135.95 1338900000 526020000 0 445180000 146910000 33317000 0 147540000 39958000 + 642 801 562 4145;4146;4147;4148;4149;4150;4151;4152;4153;4154;4155;4156;4157;4158;4159;4160 2710;2711;2712;2713;2714;2715;2716;2717;2718;2719 2715 10 APNTPASGANGDGSMSQTQSGSTVK 2 Deamidation (NQ) 2351.0183 0.018311779 801 CON__P15636 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 3 2 2 2 35.579 35.938 2;3 1.5791E-52 9685 20181213_JW_Orientia_Karp_3_2 254.82 217.89 487490000 149830000 138410000 8323100 60592000 64957000 0 18208000 47174000 + 643 801 562 4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171;4172;4173;4174;4175;4176;4177 2720;2721;2722;2723;2724;2725;2726;2727;2728;2729;2730;2731 2731 284;285;1653;1654 12 APPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIK Unmodified 4304.9721 0.97207968 1893 Q86U42-2;Q86U42 PABPN1 Polyadenylate-binding protein 2 yes no 0 0 0 0 By MS/MS 1 66.634 67.043 4 0.041956 26064 20181213_JW_Orientia_Karp_3_2 17.789 2.0098 979190 0 0 0 0 0 0 0 979190 644 1893 563 4178 2732 2732 0 APQETYADIGGLDNQIQEIK Unmodified 2202.0804 0.080441751 1725 Q53XL8;Q53HB3;P62191-2;P62191;G3V4X1 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 2 1 1 60.537 60.72 2;3 7.2282E-17 25478 20181213_JW_Orientia_Karp_1_3 219.03 119.37 34962000 12187000 13274000 9501600 0 0 0 0 0 645 1725 564 4179;4180;4181;4182 2733;2734;2735 2735 3 APRPFGSVSSPK Unmodified 1228.6564 0.65642086 257 A0A024RDE8;Q96HC4;F5H7Y0;Q4W5K9 PDLIM5;LIM PDZ and LIM domain protein 5 no no 0 0 0 1 By matching By MS/MS By matching By MS/MS By matching 1 2 1 1 1 30.439 30.77 3 0.012603 7165 20181213_JW_Orientia_Karp_2_2 94.538 45.072 35894000 25885000 2898400 3654300 0 1172300 0 2284400 0 646 257 565 4183;4184;4185;4186;4187;4188 2736;2737 2737 2 APSTYGGGLSVSSR Unmodified 1337.6575 0.65754307 795 CON__P08779;P08779 KRT16 Keratin, type I cytoskeletal 16 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 38.364 38.697 2 8.3606E-14 11300 20181213_JW_Orientia_Karp_3_2 184.87 123.11 131510000 17777000 23185000 27885000 14246000 7969900 990770 36719000 2737800 + 647 795 566 4189;4190;4191;4192;4193;4194;4195;4196;4197 2738;2739;2740;2741 2741 3 APSTYGGGLSVSSSR Unmodified 1424.6896 0.68957148 790 CON__P02533;P02533 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 38.168 38.518 2 4.8652E-13 11535 20181213_JW_Orientia_Karp_2_1 198.97 157.85 208750000 35440000 22447000 30228000 23679000 23820000 0 73132000 0 + 648 790 567 4198;4199;4200;4201;4202;4203;4204 2742;2743;2744;2745;2746;2747 2745 6 APTCGLCEVAR Unmodified 1232.5642 0.56417674 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37 37.3 2 0.0037888 11384 20181213_JW_Orientia_Karp_1_3 110.38 81.584 150910000 56062000 54715000 25159000 0 0 0 14976000 0 649 1466;1549 568 4205;4206;4207;4208;4209 2748;2749;2750;2751 2749 4 APTLHCLSIQAFEPVLIEDK Unmodified 2280.1824 0.1824044 1169 Karp_00623 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.68 67.882 3 0.00050498 29960 20181213_JW_Orientia_Karp_1_3 105.01 78.531 241810000 57244000 42628000 46248000 0 41443000 16427000 11538000 26279000 650 1169 569 4210;4211;4212;4213;4214;4215;4216 2752;2753;2754;2755;2756;2757 2753 6 APVDITGQFEK Unmodified 1203.6136 0.61355299 242 A8K067;B4DI19;Q53HG6;A8MVQ3;B4DKY1;A0A024RCG3;B4DPV7;P49589-2;P49589;P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 1 49.013 49.013 2 0.017055 18501 20181213_JW_Orientia_Karp_1_1 88.681 49.659 6214400 6214400 0 0 0 0 0 0 0 651 242 570 4217 2758 2758 1 APVGSVVSVPSQSSASSDK Unmodified 1787.8901 0.89012178 84 B4DHC5;A0A024R458;P52594-2;P52594-3;P52594;P52594-4 HRB;AGFG1 Arf-GAP domain and FG repeat-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 42.888 43.218 2 4.244E-05 13953 20181213_JW_Orientia_Karp_3_1 142.85 103 60853000 17422000 19630000 10178000 4770900 2486300 0 5300800 1065300 652 84 571 4218;4219;4220;4221;4222;4223;4224 2759;2760;2761;2762;2763 2763 5 APVIRPGGTLGLSEAADSDAHLFQDSTEPR Unmodified 3106.532 0.53195521 106 A0A024R542;Q9C0C2;Q86TK2 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 55.846 56.167 4 1.1375E-05 22902 20181213_JW_Orientia_Karp_1_2 88.856 60.445 206450000 38400000 24780000 46154000 18610000 32308000 23794000 22406000 0 653 106 572 4225;4226;4227;4228;4229;4230;4231 2764;2765;2766 2764 3 APVITVMGHVDHGK Unmodified 1459.7606 0.76056836 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 35.037 35.37 3 0.027327 11080 20181213_JW_Orientia_Karp_1_1 78.705 54.353 148330000 50013000 40286000 37619000 3150900 0 3111800 14148000 0 654 1366 573 4232;4233;4234;4235;4236;4237 2767;2768;2769;2770 2767 4 APVITVMGHVDHGK Oxidation (M) 1475.7555 0.75548298 1366 Karp_01876 yes yes 0 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 28.356 28.594 4 0.036904 7225 20181213_JW_Orientia_Karp_1_2 49.333 17.079 8205700 1574900 4351700 0 0 1641900 637220 0 0 655 1366 573 4238;4239;4240;4241 2771 2771 0 APVMLLDEATNAIDSK Oxidation (M) 1702.8448 0.8447515 1429 Karp_02383 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 61.414 61.716 2 0.0093005 23784 20181213_JW_Orientia_Karp_2_2 118.76 80.013 31245000 9794600 0 8347300 2513100 4212500 4263100 849350 1264800 656 1429 574 4242;4243;4244;4245;4246;4247;4248 2772;2773;2774;2775 2774 1037 3 APVMLLDEATNAIDSK Unmodified 1686.8498 0.84983687 1429 Karp_02383 yes yes 0 0 0 0 By MS/MS 1 64.812 64.911 2 0.026044 28026 20181213_JW_Orientia_Karp_1_3 79.639 46.639 7888000 0 0 7888000 0 0 0 0 0 657 1429 574 4249 2776 2776 1 APVPASELLASGVLSR Unmodified 1565.8777 0.8777066 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 64.02 64.28 2 0.00051569 28095 20181213_JW_Orientia_Karp_1_2 134.61 116.28 54176000 17985000 21401000 12699000 641160 0 0 291240 1158600 658 1803 575 4250;4251;4252;4253;4254;4255 2777;2778;2779 2778 3 APVPTGEVYFADSFDR Unmodified 1769.8261 0.82606496 1637 P27824;P27824-2;Q16094;H0Y9Q7;D6RB85;D6RDP7;D6RAU8;D6RAQ8;D6RHJ3;D6RD16 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 62.835 63.13 2 1.0444E-05 23701 20181213_JW_Orientia_Karp_3_2 162.31 134.07 605110000 228270000 135020000 132990000 10992000 43760000 26754000 402530 26917000 659 1637 576 4256;4257;4258;4259;4260;4261;4262;4263 2780;2781;2782;2783;2784;2785;2786;2787 2787 8 APVQPQQSPAAAPGGTDEKPSGK Unmodified 2217.1026 0.10257418 599 B4DM22;Q59EG8;Q13200;F8WBS8;C9JPC0;Q9NSM5 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 30.526 30.851 3 0.0018421 8628 20181213_JW_Orientia_Karp_1_1 99.964 66.657 33889000 14127000 5088300 11296000 0 0 0 3378500 0 660 599 577 4264;4265;4266;4267;4268 2788;2789;2790;2791 2788 4 APWIEQEGPEYWDQETR Unmodified 2132.9439 0.94394827 268;1906 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HLA-A;HLA;HLA-A*03;HLA-B;HLA-A*01;HLA-All;HLA-A null;HLA-DQB1 HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 61.588 61.826 2 8.0847E-32 26159 20181213_JW_Orientia_Karp_1_3 236.05 0 116400000 0 33890000 63352000 0 11501000 7657900 0 0 661 268;1906 578 4269;4270;4271;4272 2792;2793;2794;2795 2794 4 APWIEQEGPQYWDGETR Deamidation (NQ) 2061.9068 0.90683448 755 M1F4B6;K7P5I8;I6TMZ2;G0KXH3;D3U474;C5IZN8 HLA-A yes no 0 1 0 0 By matching By matching By MS/MS 1 1 1 61.533 61.903 2 3.1061E-21 23021 20181213_JW_Orientia_Karp_3_2 213.67 9.3211 13022000 0 0 0 3230400 0 5312300 0 4479600 662 755 579 4273;4274;4275 2796 2796 1628 1 APWLEQEGPEYWDR Unmodified 1774.7951 0.79509919 754 C9E1I4;C0KK01 HLA-C yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.396 60.712 2 1.1063E-34 25445 20181213_JW_Orientia_Karp_1_3 247.13 0 396720000 136590000 0 151620000 25068000 30756000 20884000 13473000 18337000 663 754 580 4276;4277;4278;4279;4280;4281;4282 2797;2798;2799;2800;2801;2802;2803 2798 7 APWVEQEGPEYWDR Unmodified 1760.7794 0.77944912 915;933;2063 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HLA-C;HLA-Cw;HLA-Cw*03MAC;HLA-Cw*03;HLA-B;HLA-Cw*07;HLA-Cw*0707;HLA-Cw*15P;Cw*08;HLA;HLA-Cw* HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-3 alpha chain no no 0 0 0 0 By MS/MS By matching 1 1 56.959 57.439 2 0.0010552 23852 20181213_JW_Orientia_Karp_1_2 134.56 0 33531000 0 29814000 0 0 0 0 0 3717600 664 915;933;2063 581 4283;4284 2804 2804 1 AQAAAPASVPAQAPK Unmodified 1376.7412 0.74121312 75 A0A024R326;Q6IPI1;P47914 RPL29 60S ribosomal protein L29 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.046 35.403 2 0.00012899 10144 20181213_JW_Orientia_Karp_3_1 148.89 112.57 882490000 141390000 314150000 197210000 21562000 28053000 21583000 127230000 31315000 665 75 582 4285;4286;4287;4288;4289;4290;4291;4292 2805;2806;2807;2808;2809;2810;2811;2812 2811 8 AQAEAQQPTFDALR Unmodified 1544.7583 0.75831975 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 46.605 46.829 2 0.00014301 17077 20181213_JW_Orientia_Karp_1_1 159.5 76.666 52060000 27347000 0 13774000 7274500 0 3664100 0 0 666 1803 583 4293;4294;4295;4296;4297 2813;2814;2815;2816 2813 4 AQDAPLSLLQTQGGR Unmodified 1553.8162 0.81616898 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 55.749 56.019 2 1.9634E-05 22758 20181213_JW_Orientia_Karp_1_2 162.67 114.07 78031000 20723000 21166000 31639000 1970900 2532100 0 0 0 667 839 584 4298;4299;4300;4301;4302 2817;2818 2817 2 AQDEGLLSDVVPFK Unmodified 1516.7773 0.77732386 1710 P55084-2;P55084;F5GZQ3;B4DDC9;B4DY96;D6W539 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.581 69.726 2 0.00075717 31129 20181213_JW_Orientia_Karp_1_3 174.46 116.03 65303000 13674000 5815200 24602000 2917900 3093400 1803100 9810300 3587000 668 1710 585 4303;4304;4305;4306;4307;4308;4309;4310 2819;2820;2821;2822;2823;2824;2825 2821 7 AQDGAAMEMQPLK 2 Oxidation (M) 1420.6327 0.63265023 219 A0A024RBC7;P20020-5;P20020-2;P20020-6;P20020-3;P20020-4;P20020;E7ERY9 ATP2B1 Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 1 yes no 0 0 2 0 By MS/MS 1 28.401 28.751 2 0.019728 7317 20181213_JW_Orientia_Karp_1_2 105.36 75.615 0 0 0 0 0 0 0 0 0 669 219 586 4311 2826 2826 166;167 1 AQDLSNLENTVAALK Unmodified 1585.8312 0.83115034 1980 Q9NQ48;H7C488;Q9NQ48-2;Q9NQ48-3 LZTFL1 Leucine zipper transcription factor-like protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 61.205 61.556 2 0.016011 23754 20181213_JW_Orientia_Karp_2_2 88.163 35.15 16319000 0 0 0 3594000 7515400 4012600 1196900 0 670 1980 587 4312;4313;4314;4315 2827 2827 1 AQEPESGLSEETQVK Unmodified 1630.7686 0.76860967 878 E7EUY0;P78527-2;P78527 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 1 36.724 37.074 2 0.0023847 11367 20181213_JW_Orientia_Karp_1_2 120.6 64.171 2738000 0 2738000 0 0 0 0 0 0 671 878 588 4316 2828 2828 1 AQEQQQQMAELHSK Oxidation (M) 1670.7682 0.76823251 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5 RRBP1 Ribosome-binding protein 1 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 19.06 19.3 3 0.0036154 3678 20181213_JW_Orientia_Karp_1_1 111.31 85.595 11525000 4773600 3606000 0 772990 0 1393700 979180 0 672 279 589 4317;4318;4319;4320;4321 2829;2830;2831 2829 200 3 AQEQQSLIHTNQAESHTAVGR Unmodified 2304.1207 0.12068386 1789 Q13201;E7EPG1;B7Z7R8;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 29.591 30.011 4 0.021365 7869 20181213_JW_Orientia_Karp_1_3 56.708 31.995 108340000 0 35905000 21566000 14884000 8406800 0 27580000 0 673 1789 590 4322;4323;4324;4325;4326 2832;2833;2834 2833 3 AQFEGIVTDLIR Unmodified 1360.7351 0.73506511 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;B7Z4T3;A1XP52;H0YBG6 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.624 67.826 2 2.6041E-11 29907 20181213_JW_Orientia_Karp_1_3 203.03 74.172 101500000 18561000 11607000 23250000 0 17564000 8786100 10588000 11141000 674 721 591 4327;4328;4329;4330;4331;4332;4333 2835;2836;2837;2838;2839;2840;2841;2842 2838 8 AQGHGVGVVQMGPR Oxidation (M);2 Deamidation (NQ) 1409.6721 0.67214728 1877 Q6ZNZ0 CD151 yes yes 0 2 1 0 By MS/MS 1 38.278 38.429 3 0.039948 11041 20181213_JW_Orientia_Karp_2_2 51.612 29.283 0 0 0 0 0 0 0 0 0 675 1877 592 4334 2843 2843 2019;2020 1 AQGPAASAEEPKPVEAPAANSDQTVTVK Unmodified 2762.3723 0.37226668 1751 P80723;P80723-2 BASP1 Brain acid soluble protein 1 yes no 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 40.855 41.185 3 0.0018851 13030 20181213_JW_Orientia_Karp_3_1 126.86 102.13 90279000 12421000 17066000 15221000 18206000 0 0 27365000 0 676 1751 593 4335;4336;4337;4338;4339 2844;2845;2846 2845 3 AQGPAASAEEPKPVEAPAANSDQTVTVK Deamidation (NQ) 2763.3563 0.35628226 1751 P80723;P80723-2 BASP1 Brain acid soluble protein 1 yes no 0 1 0 1 By MS/MS By matching 1 1 42.564 42.965 3 0.0004265 13447 20181213_JW_Orientia_Karp_2_2 95.052 73.211 13145000 0 0 0 0 6809700 0 6334900 0 677 1751 593 4340;4341 2847;2848 2847 1149 2 AQGPAASAEEPKPVEAPAANSDQTVTVKE Unmodified 2891.4149 0.41485977 1751 P80723;P80723-2 BASP1 Brain acid soluble protein 1 yes no 0 0 0 2 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 41.816 42.154 3 2.3935E-11 13920 20181213_JW_Orientia_Karp_1_3 136.2 109.54 23941000 0 6784800 10383000 0 2377900 0 4395500 0 678 1751 594 4342;4343;4344;4345 2849;2850;2851;2852;2853 2852 5 AQGPAASAEEPKPVEAPAANSDQTVTVKE Deamidation (NQ) 2892.3989 0.39887536 1751 P80723;P80723-2 BASP1 Brain acid soluble protein 1 yes no 0 1 0 2 By matching By MS/MS By matching 1 1 1 43.605 43.755 3 0.00025585 14765 20181213_JW_Orientia_Karp_1_3 93.126 74.566 12476000 3512100 0 7669100 0 0 1295100 0 0 679 1751 594 4346;4347;4348 2854 2854 1149 1 AQGVVLK Unmodified 713.44357 0.44357454 163 B3KPC7;A0A024R897;Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 27.306 27.628 2 0.034375 6870 20181213_JW_Orientia_Karp_1_3 86.512 20.083 11892000 2670600 5566100 2202100 0 673310 0 0 780230 680 163 595 4349;4350;4351;4352;4353 2855 2855 1 AQGYSGLSVK Unmodified 1008.524 0.52400971 186 A0A024R9Q1;P07996;P07996-2;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 34.419 34.749 2 0.0016096 10170 20181213_JW_Orientia_Karp_1_3 117.31 64.909 134630000 47238000 0 47042000 7283200 6598800 0 26472000 0 + 681 186 596 4354;4355;4356;4357;4358 2856;2857;2858 2857 3 AQHEDQVEQYK Unmodified 1373.6212 0.62115757 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.072 21.418 3 0.00049506 4473 20181213_JW_Orientia_Karp_1_1 124.39 84.37 18999000 4511700 6374500 2408300 1674100 767210 1593300 1032600 636980 682 1543;1544;1851 597 4359;4360;4361;4362;4363;4364;4365;4366 2859;2860;2861;2862;2863;2864;2865;2866 2859 8 AQHEDQVEQYKK Unmodified 1501.7161 0.71612058 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 17.872 18.101 3 0.00098075 3269 20181213_JW_Orientia_Karp_1_2 120.59 80.073 9879400 3975800 2686800 2188900 547250 0 0 480640 0 683 1543;1544;1851 598 4367;4368;4369;4370;4371 2867;2868;2869 2868 3 AQIHDLVLVGGSTR Unmodified 1464.8049 0.80487601 369 A8K5I0;P08107-2;P08107;B4DFN9;B4DNT8;Q59EJ3;B4E388;B4DI39;B4DWK5;B4DVU9;B4E1S9;V9GZ37;B3KTT5 HEL-S-103;HSPA1A Heat shock 70 kDa protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 1 1 45.306 45.481 3 0.032929 16346 20181213_JW_Orientia_Karp_1_1 52.527 29.047 48547000 29730000 18817000 0 0 0 0 0 0 684 369 599 4372;4373 2870;2871;2872 2870 3 AQIHGGILR Unmodified 963.5614 0.56139826 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 27.849 28.19 2 0.039838 7104 20181213_JW_Orientia_Karp_1_2 72.485 0.2512 26918000 4094900 13677000 5457600 1991400 0 0 0 1696700 685 195 600 4374;4375;4376;4377;4378 2873 2873 1 AQILPIR Acetyl (Protein N-term) 851.52289 0.52288749 1757 Q00610-2;Q00610;J3KS13;J3QL20;J3KSQ2 CLTC Clathrin heavy chain 1 yes no 1 0 0 0 By MS/MS By MS/MS 1 1 69.334 69.383 2 0.02214 30869 20181213_JW_Orientia_Karp_1_3 97.071 28.156 6188200 4105200 0 2083000 0 0 0 0 0 686 1757 601 4379;4380 2874;2875 2875 2 AQITGYR Unmodified 807.4239 0.42390173 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 26.243 26.747 2 0.039309 6488 20181213_JW_Orientia_Karp_1_2 83.753 33.626 69895000 0 64221000 0 0 2797700 0 0 2876000 687 85 602 4381;4382;4383 2876 2876 1 AQLADSFHLQQFFR Unmodified 1706.8529 0.85288884 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 62.871 62.987 3 0.041043 26855 20181213_JW_Orientia_Karp_1_3 45.28 19.156 18619000 6854200 0 7953900 0 0 3810600 0 0 688 316 603 4384;4385;4386 2877 2877 1 AQLFALTGVQPAR Unmodified 1370.767 0.76703394 322 A6NJA2;D3DUG9;B2RD79;P54578-2;B7Z4N8;P54578;J3QQT6;J3KS55;B3KTG4 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 By MS/MS 1 58.992 58.992 2 0.012752 24979 20181213_JW_Orientia_Karp_1_1 107.97 60.779 0 0 0 0 0 0 0 0 0 689 322 604 4387 2878 2878 1 AQLGGPEAAK Unmodified 940.49779 0.49779495 1553 V9HW43;P04792;B4DL87;C9J3N8 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 25.154 25.499 2 5.8934E-06 6367 20181213_JW_Orientia_Karp_1_1 169.65 108.68 914570000 88147000 201210000 83341000 131740000 91371000 56038000 174740000 87985000 690 1553 605 4388;4389;4390;4391;4392;4393;4394;4395 2879;2880;2881;2882;2883 2879 5 AQLHDTNMELTDLK Unmodified 1627.7876 0.78757097 482 B2RAH5;O14974-5;O14974-4;O14974-3;O14974;H0YIM2;H0YIS3 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 43.188 43.498 3 0.030497 14783 20181213_JW_Orientia_Karp_1_2 66.784 33.58 22466000 4274700 10666000 3636700 0 361920 0 3472800 53327 691 482 606 4396;4397;4398;4399;4400;4401 2884 2884 1 AQLHGASEEPGHFSLTNAASTHTTNEGIFSPTPGELGFSSFHR Unmodified 4523.1167 0.1166677 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 55.76 55.909 5 0.023129 23108 20181213_JW_Orientia_Karp_1_1 31.16 19.184 28855000 12434000 0 10597000 0 5823700 0 0 0 692 195 607 4402;4403;4404 2885 2885 1 AQLLGLIQR Unmodified 1010.6237 0.62366417 651 B4DWN0;G5E9W9;B4DWA5;Q9NUV9 GIMAP4 GTPase IMAP family member 4 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 55.259 55.528 2 0.00097677 22914 20181213_JW_Orientia_Karp_1_1 132.08 65.285 70801000 31149000 13249000 20865000 1226200 4310900 0 0 0 693 651 608 4405;4406;4407;4408;4409 2886;2887;2888 2886 3 AQLTSQLNSK Unmodified 1088.5826 0.58258722 1170 Karp_00624 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 30.119 30.449 2 0.0017045 7665 20181213_JW_Orientia_Karp_2_3 117.02 63.248 81341000 24226000 16939000 17396000 9189000 5328400 4763600 0 3499500 694 1170 609 4410;4411;4412;4413;4414;4415;4416;4417 2889;2890;2891;2892;2893;2894 2891 6 AQMVQEDLEK Oxidation (M) 1205.5598 0.55980286 1630 V9HWC0;P26038;B7Z4C7 HEL70;MSN Moesin yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 29.708 29.908 2 0.0043728 8273 20181213_JW_Orientia_Karp_1_1 102.06 54.875 3968800 2198900 0 0 0 990720 779240 0 0 695 1630 610 4418;4419;4420 2895 2895 1254 1 AQNTWGCGNSLR Unmodified 1362.6099 0.60988137 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;P02545-2;W8QEH3;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 35.364 35.726 2 2.3248E-16 10708 20181213_JW_Orientia_Karp_1_2 211.37 143.48 66214000 23946000 7445900 11637000 0 0 0 12465000 10720000 696 1543;1544;1851 611 4421;4422;4423;4424;4425 2896;2897;2898;2899;2900 2897 5 AQPSASLGVGYR Unmodified 1204.62 0.62003536 1949 Q96PK6;Q59GV2 RBM14 RNA-binding protein 14 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 39.866 40.183 2 0.010028 13475 20181213_JW_Orientia_Karp_1_1 97.734 49.451 82355000 31137000 20402000 14511000 3699300 0 1772200 10834000 0 697 1949 612 4426;4427;4428;4429;4430;4431 2901 2901 1 AQPSVSLGAAYR Unmodified 1218.6357 0.63568542 1949 Q96PK6;Q59GV2 RBM14 RNA-binding protein 14 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 42.558 42.858 2 0.019069 14267 20181213_JW_Orientia_Karp_1_3 86.463 53.238 66638000 32024000 12805000 14097000 0 0 0 7711000 0 698 1949 613 4432;4433;4434;4435 2902 2902 1 AQPSVSLGAPYR Unmodified 1244.6513 0.65133548 1949 Q96PK6;Q59GV2 RBM14 RNA-binding protein 14 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 44.172 44.524 2 0.012599 15866 20181213_JW_Orientia_Karp_1_1 93.561 34.746 41201000 15939000 16089000 0 1503500 1643900 0 5294600 731170 699 1949 614 4436;4437;4438;4439;4440;4441 2903;2904 2903 2 AQPVQVAEGSEPDGFWEALGGK Unmodified 2271.0808 0.080776102 716 B7Z2X4;B7Z992;P06396-2;B7Z9A0;B7Z6N2;P06396-4;P06396-3;P06396;B7Z4U6;Q5T0H7;Q5T0H8;Q5T0H9;B3KS49 GSN Gelsolin yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 2 1 2 2 67.921 68.136 2;3 0.0014118 30309 20181213_JW_Orientia_Karp_1_2 102.72 84.514 147130000 45323000 18875000 21513000 4228800 10585000 3004800 28263000 15339000 700 716 615 4442;4443;4444;4445;4446;4447;4448;4449;4450;4451;4452;4453 2905;2906;2907;2908 2905 4 AQPVQVAEGSEPDGFWEALGGK Deamidation (NQ) 2272.0648 0.064791686 716 B7Z2X4;B7Z992;P06396-2;B7Z9A0;B7Z6N2;P06396-4;P06396-3;P06396;B7Z4U6;Q5T0H7;Q5T0H8;Q5T0H9;B3KS49 GSN Gelsolin yes no 0 1 0 0 By MS/MS By matching 1 1 67.883 68.187 2 0.001492 30119 20181213_JW_Orientia_Karp_1_3 129.05 80.446 25996000 0 0 21171000 0 0 0 0 4824900 701 716 615 4454;4455 2909 2909 1604 1 AQQAADKYLYVDK Acetyl (Protein N-term) 1553.7726 0.77257283 47 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99 MYH9 Myosin-9 yes no 1 0 0 1 By MS/MS 1 50.649 50.649 2 0.0397 19634 20181213_JW_Orientia_Karp_1_1 85.522 45.025 7432000 7432000 0 0 0 0 0 0 0 702 47 616 4456 2910 2910 1 AQQEFAAGVFSNPAVR Unmodified 1690.8427 0.84271808 1494 Q6FHJ5;O14828-2;O14828 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 0 By MS/MS 1 55.525 55.875 2 0.013854 22664 20181213_JW_Orientia_Karp_1_2 89.747 42.792 5808600 0 5808600 0 0 0 0 0 0 703 1494 617 4457 2911 2911 1 AQQEQELAADAFK Unmodified 1447.6943 0.69432251 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314;A2VCQ4 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 44.946 45.299 2 3.2272E-13 15659 20181213_JW_Orientia_Karp_1_3 210.44 160.41 135940000 0 50682000 66178000 0 0 0 0 19078000 704 588 618 4458;4459;4460;4461;4462 2912;2913;2914;2915 2913 4 AQQEQELAADAFK Deamidation (NQ) 1448.6783 0.6783381 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314;A2VCQ4 PRKCSH Glucosidase 2 subunit beta yes no 0 1 0 0 By MS/MS 1 45.205 45.356 2 0.0087491 14825 20181213_JW_Orientia_Karp_2_2 145.14 101.49 0 0 0 0 0 0 0 0 0 705 588 618 4463 2916 2916 1530 1 AQQNVSQNNIDDDSDQEDEELTNAAAINR Unmodified 3216.4039 0.40391375 1337 Karp_01411 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 50.618 50.952 3 5.5508E-07 18344 20181213_JW_Orientia_Karp_2_3 112.42 95.817 187100000 35007000 61180000 40975000 11902000 13442000 9993800 14603000 0 706 1337 619 4464;4465;4466;4467;4468;4469;4470;4471;4472 2917;2918;2919;2920;2921;2922;2923;2924;2925 2923 9 AQQNVSQNNIDDDSDQEDEELTNAAAINR Deamidation (NQ) 3217.3879 0.38792933 1337 Karp_01411 yes yes 0 1 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 1 2 1 52.449 52.749 3 5.0415E-09 19200 20181213_JW_Orientia_Karp_2_1 125.99 99.494 118890000 25846000 42528000 26656000 8026200 13577000 0 2253900 0 707 1337 619 4473;4474;4475;4476;4477;4478;4479;4480 2926;2927;2928 2927 777;778 3 AQQVAVQEQEIAR Unmodified 1468.7634 0.76340513 289 A2VCL5;Q6IB58;Q5ST80;Q53HQ0;O75955-2;O75955;A2AB09 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 36.827 37.096 2 2.0933E-05 11852 20181213_JW_Orientia_Karp_1_1 176.32 106.5 8094700 4803700 0 3061100 0 0 0 0 229980 708 289 620 4481;4482;4483;4484 2929;2930;2931 2929 3 AQQVSQGLDVLTAK Unmodified 1456.7886 0.78855725 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.454 49.755 2 6.0812E-73 18364 20181213_JW_Orientia_Karp_1_3 293.47 222.57 359750000 79637000 114410000 75751000 24981000 24406000 20135000 0 20434000 709 19 621 4485;4486;4487;4488;4489;4490;4491 2932;2933;2934;2935;2936;2937;2938;2939 2934 8 AQSINITELNLPQLEMLK Acetyl (Protein N-term) 2096.1187 0.11874151 1955 Q99471;H3BMQ1;Q99471-3;Q99471-2;F8VNW6;F8VQZ2 PFDN5 Prefoldin subunit 5 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 77.863 77.828 2 1.3765E-06 36743 20181213_JW_Orientia_Karp_1_1 188.19 127.83 29905000 8645100 5739200 5180500 3196000 0 2813400 4330700 0 710 1955 622 4492;4493;4494;4495;4496;4497 2940;2941;2942;2943;2944;2945 2940 6 AQSINITELNLPQLEMLK Acetyl (Protein N-term);Oxidation (M) 2112.1137 0.11365613 1955 Q99471;H3BMQ1;Q99471-3;Q99471-2;F8VNW6;F8VQZ2 PFDN5 Prefoldin subunit 5 yes no 1 0 1 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 76.623 76.614 2 5.7028E-05 31465 20181213_JW_Orientia_Karp_2_1 140.84 91.721 51883000 14287000 7070600 0 8812000 8318600 3103600 10290000 0 711 1955 622 4498;4499;4500;4501;4502;4503 2946;2947 2946 1513 2 AQSTWLK Unmodified 832.4443 0.44430282 1108 Karp_00286 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 33.482 33.839 2 0.0068155 9432 20181213_JW_Orientia_Karp_3_1 157.21 55.997 1656900000 470940000 367410000 477870000 138430000 331050 44659000 113440000 43798000 712 1108 623 4504;4505;4506;4507;4508;4509;4510;4511 2948;2949;2950;2951;2952;2953 2952 6 AQVIYTR Unmodified 849.47085 0.47085192 1737 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 29.657 30.058 2 0.016957 8363 20181213_JW_Orientia_Karp_1_1 107.9 58.306 70316000 14944000 20621000 14611000 4239700 5303300 0 7929400 2668100 713 1737 624 4512;4513;4514;4515;4516;4517;4518 2954;2955 2954 2 AQYEDIAQK Unmodified 1064.5138 0.51383895 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 30.702 31.104 2 0.00024326 8061 20181213_JW_Orientia_Karp_3_1 177.3 84.109 1029400000 262370000 0 227500000 53068000 84942000 170650000 142320000 88546000 + 714 995;996 625 4519;4520;4521;4522;4523;4524;4525 2956;2957;2958;2959;2960;2961;2962;2963;2964 2962 9 AQYEEIANR Unmodified 1092.52 0.51998696 799;679 B4E1T1;B4DL32;H0YIN9;H0YI76;CON__P13647;P13647 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 31.366 31.768 2 0.00081068 9131 20181213_JW_Orientia_Karp_1_1 143.37 38.937 60672000 12413000 19176000 0 11770000 6030900 0 8166400 3114500 + 715 679;799 626 4526;4527;4528;4529;4530;4531 2965;2966 2965 2 AQYEEIAQR Unmodified 1106.5356 0.53563702 804;1657;341;793;805;590 CON__P35908;P35908;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0;B4DRW1;B4DRR7;B4DKJ0;B4DRS2;CON__P19013;P19013 KRT2;KRT6A;KRT6B;KRT6C;KRT4 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 4 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.152 32.51 2 0.00022157 8631 20181213_JW_Orientia_Karp_2_3 181.41 114.98 324620000 55772000 57005000 51163000 28664000 14813000 8547500 87884000 20771000 + 716 804;1657;341;793;805;590 627 4532;4533;4534;4535;4536;4537;4538;4539 2967;2968;2969;2970;2971;2972;2973;2974 2972 8 AQYGSILLVTDGQEVTK Unmodified 1820.952 0.95199376 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 59.664 59.864 2 1.5297E-11 25593 20181213_JW_Orientia_Karp_1_1 181.58 116.85 42133000 18685000 10665000 9933600 0 0 2850100 0 0 717 1169 628 4540;4541;4542;4543 2975 2975 1 AQYSMVFSHYEQVSR Oxidation (M) 1846.8308 0.83083277 1094 Karp_00243 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 42.816 43.175 3 0.0078093 14406 20181213_JW_Orientia_Karp_1_3 97.2 69.993 216350000 63915000 69230000 42878000 11914000 0 0 25043000 3363700 718 1094 629 4544;4545;4546;4547;4548;4549 2976;2977 2977 605 2 AQYSMVFSHYEQVSR Unmodified 1830.8359 0.83591814 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.756 46.999 3 0.0096536 16522 20181213_JW_Orientia_Karp_1_3 80.102 48.427 227870000 95865000 50273000 40897000 0 7031100 12079000 0 21727000 719 1094 629 4550;4551;4552;4553;4554;4555 2978;2979;2980;2981;2982;2983 2980 6 AQYYAAK Unmodified 813.4021 0.40210366 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 21.701 22.078 2 0.0078236 4544 20181213_JW_Orientia_Karp_1_3 153.88 59.878 69016000 0 22521000 13694000 9880500 8313500 5944100 5643100 3019400 720 1068;1081;1083;1086;1151;1356 630 4556;4557;4558;4559;4560;4561;4562;4563 2984;2985;2986;2987;2988;2989;2990 2985 7 AQYYLPDGSTIEIGPSR Unmodified 1865.9159 0.9159426 601 R4GMT0;B4DM97;P61163;B4DXP9 ACTR1A Alpha-centractin no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 64.171 64.392 2 0.00025676 27738 20181213_JW_Orientia_Karp_1_3 133.98 72.741 36836000 9878400 15751000 9706500 487680 0 0 0 1011800 721 601 631 4564;4565;4566;4567;4568 2991;2992;2993 2993 3 ARDDLITDLLNEAK Unmodified 1585.8312 0.83115034 1659 Q53Y06;P36543-2;P36543;C9J8H1 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 0 0 0 1 By matching By MS/MS 1 1 65.64 65.689 3 0.018802 28485 20181213_JW_Orientia_Karp_1_3 123.1 62.16 4921700 1702100 0 3219700 0 0 0 0 0 722 1659 632 4569;4570 2994 2994 1 ARPFPDGLAEDIDK Unmodified 1542.7678 0.7678218 1593 P13639;Q8TA90;B4DPU3;Q6W6M8;M0R0I6 EEF2 Elongation factor 2 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 1 1 1 1 1 1 49.2 49.501 3 0.0017651 18226 20181213_JW_Orientia_Karp_1_3 163.62 130.31 126840000 12547000 33071000 15466000 39863000 8812200 15717000 0 1365000 723 1593 633 4571;4572;4573;4574;4575;4576;4577;4578 2995;2996;2997;2998;2999 2998 5 ASAEGPLLGPEAAPSGEGAGSK Unmodified 1951.9487 0.9486993 777 C9JQV0;Q9BRJ6 C7orf50 Uncharacterized protein C7orf50 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 46.999 47.319 2 0.00066185 17037 20181213_JW_Orientia_Karp_1_2 109.84 73.554 35428000 8268500 5484400 8013600 2775000 2609600 3162700 1598600 3516000 724 777 634 4579;4580;4581;4582;4583;4584;4585;4586 3000;3001;3002;3003;3004 3000 5 ASAGHAVSIAQDDAGADDWETDPDFVNDVSEK Unmodified 3331.4389 0.43890227 117 A0A024R5M3;Q53HG7;Q14247-3;Q14247;Q14247-2;Q76MU0 CTTN;EMS1 Src substrate cortactin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 58.491 58.725 3 4.2528E-25 24217 20181213_JW_Orientia_Karp_1_3 173.55 155.05 78197000 19887000 0 11689000 20575000 17939000 8107300 0 0 725 117 635 4587;4588;4589;4590;4591;4592 3005;3006;3007;3008;3009 3006 5 ASAGPQPLLVQSCK Unmodified 1454.7551 0.75514863 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 43.486 43.806 2 2.5932E-18 15431 20181213_JW_Orientia_Karp_1_1 224.25 156.54 94812000 25984000 20648000 26161000 2380300 2020500 1396100 12898000 3325000 726 2016 636 4593;4594;4595;4596;4597;4598;4599;4600 3010;3011;3012;3013 3010 4 ASASGSGAQVGGPISSGSSASSVTVTR Unmodified 2364.1517 0.15170921 1543 P02545;P02545-3;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 43.115 43.412 2;3 6.9345E-25 15124 20181213_JW_Orientia_Karp_1_1 217.73 152.79 258180000 54246000 75423000 64474000 0 1661600 34683000 26333000 1361400 727 1543 637 4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612 3014;3015;3016;3017;3018;3019;3020 3015 7 ASCLYGQLPK Unmodified 1135.5696 0.56957969 1574 V9HWE9;P09211;A8MX94 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 42.608 42.938 2 0.0014941 13794 20181213_JW_Orientia_Karp_3_1 117.89 66.544 118480000 47069000 22843000 18481000 1053500 0 0 29032000 0 728 1574 638 4613;4614;4615;4616;4617 3021;3022 3022 2 ASDESMFDIGDK Unmodified 1313.5445 0.54454673 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.304 52.649 2 1.981E-23 20882 20181213_JW_Orientia_Karp_1_1 238.51 187.45 193470000 87223000 32687000 40133000 11253000 12479000 7899900 884330 910090 729 1449 639 4618;4619;4620;4621;4622;4623;4624;4625 3023;3024;3025;3026;3027;3028;3029 3023 7 ASDESMFDIGDK Oxidation (M) 1329.5395 0.53946135 1449 Karp_02529 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.454 42.784 2 1.5955E-07 13355 20181213_JW_Orientia_Karp_2_2 187.16 162.38 136350000 34582000 26978000 26097000 12570000 14214000 0 17534000 4375700 730 1449 639 4626;4627;4628;4629;4630;4631;4632 3030;3031;3032;3033;3034;3035 3032 1050 6 ASDHAPVIASFE Unmodified 1242.5881 0.58806652 1102 Karp_00272 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 51.306 51.758 2 0.0038769 18644 20181213_JW_Orientia_Karp_2_3 112.84 60.987 76387000 0 0 25489000 27846000 0 18069000 3419700 1562600 731 1102 640 4633;4634;4635;4636;4637 3036;3037 3037 2 ASDIHEVILVGGMTR Oxidation (M) 1612.8243 0.82429083 1074 Karp_00050 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 46.118 46.391 2;3 0.0032722 15329 20181213_JW_Orientia_Karp_2_2 111.31 63.398 3305700000 748340000 1098500000 764650000 233890000 101560000 298060000 0 60632000 732 1074 641 4638;4639;4640;4641;4642;4643;4644;4645;4646;4647;4648;4649;4650;4651;4652 3038;3039;3040;3041;3042;3043;3044;3045 3042 592 8 ASDIHEVILVGGMTR Unmodified 1596.8294 0.8293762 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 51.596 51.923 2;3 5.6585E-06 17784 20181213_JW_Orientia_Karp_3_2 190.35 130.19 2486300000 619790000 673170000 460420000 352500000 142170000 183940000 45604000 8722700 733 1074 641 4653;4654;4655;4656;4657;4658;4659;4660;4661;4662;4663;4664;4665;4666;4667 3046;3047;3048;3049;3050;3051;3052;3053;3054 3054 9 ASEDNDSQVASDGNIYEIPTFLR Unmodified 2540.1667 0.16669058 1404 Karp_02212 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 72.196 72.291 2;3 1.5205E-35 33160 20181213_JW_Orientia_Karp_1_2 213.02 159.88 537650000 163120000 54802000 116820000 20230000 57118000 24370000 82468000 18725000 734 1404 642 4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683 3055;3056;3057;3058;3059;3060;3061;3062;3063 3056 9 ASEDNDSQVASDGNIYEIPTFLR Deamidation (NQ) 2541.1507 0.15070616 1404 Karp_02212 yes yes 0 1 0 0 By MS/MS By matching By MS/MS 1 1 1 73.834 73.849 2 2.6396E-18 34201 20181213_JW_Orientia_Karp_1_1 180.56 115.07 81534000 31733000 29891000 19910000 0 0 0 0 0 735 1404 642 4684;4685;4686 3064;3065 3064 1872 2 ASEVMGPVEAAPEYR Oxidation (M) 1620.7454 0.7453718 653 E7EU94;E7ESX0;E7EN72;B4DWW8;E7EVX8;F1T0A5;Q8WWY3-2;E7ESA8;F1T0A4;Q8WWY3 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 1 0 By MS/MS 1 42.551 42.749 2 0.0016101 14245 20181213_JW_Orientia_Karp_1_3 124.6 82.124 4779300 0 0 4779300 0 0 0 0 0 736 653 643 4687 3066 3066 404 1 ASEVYEALK Unmodified 1008.5128 0.51277632 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS By matching 1 1 38.987 39.262 2 0.00302 13001 20181213_JW_Orientia_Karp_1_1 113.66 51.194 80914000 68980000 0 0 11934000 0 0 0 0 737 1380 644 4688;4689 3067 3067 1 ASEVYEALKK Unmodified 1136.6077 0.60773933 1380 Karp_02117 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 30.424 30.99 2 0.0054655 7732 20181213_JW_Orientia_Karp_2_1 120.31 42.157 8427800 0 0 0 2332700 1843800 0 2921200 1330200 738 1380 645 4690;4691;4692;4693;4694 3068;3069;3070 3069 2 ASEWVQQVSGLMDGK Oxidation (M) 1649.7719 0.7719209 628 P49588;B4DR45 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS 1 52.523 52.721 2 0.0085247 20359 20181213_JW_Orientia_Karp_1_3 110.38 59.896 0 0 0 0 0 0 0 0 0 739 628 646 4695 3071 3071 387 1 ASFSVLGDILGSAMR Unmodified 1522.7814 0.78136338 786 CON__ENSEMBL:ENSBTAP00000024146 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 74.178 74.213 2 0.00065381 34439 20181213_JW_Orientia_Karp_1_1 158.42 119.11 21102000 12405000 0 8001700 0 0 0 0 695800 + 740 786 647 4696;4697;4698;4699 3072;3073;3074;3075 3072 3 ASFSVLGDILGSAMR Oxidation (M) 1538.7763 0.776278 786 CON__ENSEMBL:ENSBTAP00000024146 yes yes 0 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 72.12 72.202 2 0.00076694 28982 20181213_JW_Orientia_Karp_3_2 155.99 101.27 55993000 14261000 8992500 9012100 4287400 0 3563300 15876000 0 + 741 786 647 4700;4701;4702;4703;4704;4705;4706 3076;3077 3077 449 2 ASGNYATVISHNPETK Unmodified 1687.8166 0.81656291 899 E9PKZ0;P62917;G3V1A1;B4DVG7 RPL8 60S ribosomal protein L8 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 33.525 33.918 3 0.01004 10300 20181213_JW_Orientia_Karp_1_1 116.58 86.017 672360000 192800000 170170000 226820000 29896000 0 0 47044000 5632600 742 899 648 4707;4708;4709;4710;4711;4712 3078;3079;3080;3081 3078 4 ASGPGLNTTGVPASLPVEFTIDAK Unmodified 2341.2165 0.2165413 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 72.026 72.119 2 3.4903E-14 32680 20181213_JW_Orientia_Karp_1_3 167.35 120.12 175070000 56459000 0 74716000 4736500 0 6549700 27623000 4985600 743 1615 649 4713;4714;4715;4716;4717;4718 3082;3083;3084 3083 3 ASGPPVSELITK Unmodified 1197.6605 0.66050319 1605;1606;291 P16402;Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16403 HIST1H1D;HIST1H1E;HIST1H1C Histone H1.3;Histone H1.4;Histone H1.2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 2 2 2 1 2 47.786 48.093 2 0.00057671 15651 20181213_JW_Orientia_Karp_3_2 147.3 86.475 20637000000 5279300000 7078500000 4898800000 954890000 311430000 482130000 2541700 1629500000 744 1605;291;1606 650 4719;4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735 3085;3086;3087;3088;3089;3090;3091;3092;3093;3094 3094 10 ASGQAFELILSPR Unmodified 1387.746 0.74596415 282 A2A2D0;B5BU83;P16949;P16949-2;Q59G27;Q96CE4 STMN1 Stathmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1 62.832 63.075 2 3.77E-11 24612 20181213_JW_Orientia_Karp_2_3 196.16 118.43 64273000 12314000 6377900 10096000 0 21168000 11663000 0 2653000 745 282 651 4736;4737;4738;4739;4740;4741;4742;4743;4744 3095;3096;3097;3098;3099;3100;3101;3102 3101 8 ASGVAVSDGVIK Acetyl (Protein N-term) 1143.6136 0.61355299 1625 V9HWI5;P23528;E9PP50;B4E112;E9PS23 HEL-S-15;CFL1 Cofilin-1 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 3 2 1 57.003 57.292 2 2.9698E-07 21310 20181213_JW_Orientia_Karp_2_1 181.53 108.92 1120800000 212380000 181890000 85388000 183490000 207070000 249480000 0 1092600 746 1625 652 4745;4746;4747;4748;4749;4750;4751;4752;4753;4754;4755;4756;4757 3103;3104;3105;3106;3107;3108;3109;3110;3111;3112 3108 9 ASGVQVADEVCR Acetyl (Protein N-term) 1331.614 0.6139637 935 F6RFD5;V9HWA6;P60981 DSTN;HEL32 Destrin yes no 1 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 52.592 52.867 2 0.0053142 21019 20181213_JW_Orientia_Karp_1_1 105.65 57.366 62058000 35212000 13066000 10048000 3731700 0 0 0 0 747 935 653 4758;4759;4760;4761 3113 3113 1 ASIDNIDFVDEQAVVSQPLPNK Unmodified 2398.2016 0.20161952 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 67.326 67.476 3 0.011402 30144 20181213_JW_Orientia_Karp_1_1 61.345 30.481 21715000 7354300 3961900 3572700 0 6826200 0 0 0 748 1162 654 4762;4763;4764;4765 3114 3114 1 ASIGTCWQIDTK Unmodified 1378.6551 0.65510023 1150 Karp_00511 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 50.247 50.555 2 5.2853E-05 18904 20181213_JW_Orientia_Karp_1_3 166.29 111.21 64297000 15134000 14163000 11299000 7272400 6369800 8311500 1747500 0 749 1150 655 4766;4767;4768;4769;4770;4771;4772 3115;3116;3117;3118 3116 4 ASIHEAWTDGK Unmodified 1213.5728 0.57275081 1509;133 O43707;O43707-2;Q96BG6;B4E337;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;Q86TX4 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 30.308 30.745 2;3 0.00091247 7182 20181213_JW_Orientia_Karp_3_2 130.66 83.837 319760000 240710000 29912000 14706000 7779100 5294400 590850 12007000 8769200 750 1509;133 656 4773;4774;4775;4776;4777;4778;4779;4780;4781;4782;4783;4784;4785;4786;4787 3119;3120;3121;3122;3123;3124;3125 3125 7 ASIPFSVVGSNQLIEAK Unmodified 1758.9516 0.95159983 704 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 65.209 65.426 2 0.0040508 28274 20181213_JW_Orientia_Karp_1_3 115.37 46.156 57475000 14949000 14077000 15770000 730690 0 2897200 9049800 0 751 704 657 4788;4789;4790;4791;4792;4793 3126;3127;3128;3129 3128 4 ASITALEAK Unmodified 902.5073 0.50729701 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.298 37.588 2 6.7446E-06 10511 20181213_JW_Orientia_Karp_2_2 199.7 72.243 293470000 78870000 108020000 90198000 0 6114600 0 10264000 0 752 47 658 4794;4795;4796;4797;4798 3130;3131;3132;3133;3134 3133 5 ASIWVGHR Acetyl (Protein N-term) 966.50355 0.50354903 1590 P12429;D6RFG5;D6RCA8;D6RAZ8 ANXA3 Annexin A3;Annexin yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 49.701 50.053 2 0.00354 19243 20181213_JW_Orientia_Karp_1_1 151.29 84.941 144940000 48431000 59761000 0 20409000 0 10505000 0 5837800 753 1590 659 4799;4800;4801;4802;4803 3135;3136;3137;3138;3139;3140;3141;3142;3143 3135 9 ASLENSLEETK Unmodified 1219.5932 0.59321148 790;795 CON__P02533;P02533;A0A024R1X6;Q13092;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6;Q16195 KRT14;K14;KRT16;keratin Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 37.616 38.054 2 0.0021689 11877 20181213_JW_Orientia_Karp_1_2 117.14 60.702 21180000 0 6182600 8010800 2785300 0 0 4201300 0 + 754 790;795 660 4804;4805;4806;4807 3144;3145 3144 2 ASLESWWQNPVPGLR Unmodified 1738.8791 0.87910359 227 A8KA84;A0A024RBQ5;Q9Y6K5;F8VWK9;F8VS35 OAS3 2'-5'-oligoadenylate synthase 3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 71.188 71.288 2 0.0021143 32640 20181213_JW_Orientia_Karp_1_1 123.01 86.337 23135000 9356100 5389000 5814500 0 0 0 2575200 0 755 227 661 4808;4809;4810;4811 3146;3147 3146 2 ASLGSLEGEAEAEASSPK Unmodified 1731.8163 0.81628814 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS 1 48.352 48.962 2 0.03157 16017 20181213_JW_Orientia_Karp_3_2 87.083 54.585 0 0 0 0 0 0 0 0 0 756 1782 662 4812 3148 3148 1 ASLHGGEPTTIIR Unmodified 1350.7256 0.72556306 1596 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 34.962 35.362 3 0.0077581 10585 20181213_JW_Orientia_Karp_1_2 85.522 36.524 24679000 0 11786000 6323500 641890 0 592750 5335200 0 757 1596 663 4813;4814;4815;4816;4817 3149 3149 1 ASLQTQSFISAASFQETTR Unmodified 2072.0174 0.017447563 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 59.617 59.856 2;3 1.122E-142 25602 20181213_JW_Orientia_Karp_1_1 345.69 269.37 204610000 83665000 46874000 51546000 0 9983700 7290900 5252200 0 758 1169 664 4818;4819;4820;4821;4822;4823;4824;4825;4826 3150;3151;3152;3153;3154 3150 5 ASLSLAPVNIFK Acetyl (Protein N-term) 1300.7391 0.73908786 923 F8VQ14;F5GWF6;V9HW96;P78371;B7Z4R3 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 1 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 76.976 76.959 2 0.013476 36312 20181213_JW_Orientia_Karp_1_1 90.15 37.361 135630000 64874000 23295000 26306000 0 4217700 2372500 14561000 0 759 923 665 4827;4828;4829;4830;4831;4832 3155 3155 1 ASMQQQQQLASAR Oxidation (M) 1461.6994 0.69942466 2014 X6R700;Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 23.607 23.987 2 6.6323E-25 4274 20181213_JW_Orientia_Karp_3_2 231.7 135.56 21599000 0 3678700 7778800 2283900 1191400 1125400 2498600 3042300 760 2014 666 4833;4834;4835;4836;4837;4838;4839 3156;3157;3158;3159;3160;3161;3162 3162 1537 7 ASNGINFIETVWGR Deamidation (NQ) 1563.7682 0.76815616 1321 Karp_01283 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 2 2 1 1 2 1 73.514 73.565 2 1.4249E-05 34160 20181213_JW_Orientia_Karp_1_3 177.16 104.73 147100000 22692000 39908000 66387000 3827900 0 1358900 10242000 2679900 761 1321 667 4840;4841;4842;4843;4844;4845;4846;4847;4848;4849 3163;3164;3165;3166;3167 3165 763 5 ASNIFGTPEENQASWAK Acetyl (Protein N-term);2 Deamidation (NQ) 1892.8428 0.84283724 2000 Q9UK76-3;J3KSH8 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed yes no 1 2 0 0 By matching By matching By MS/MS By matching 1 1 1 1 51.289 51.676 2 0.025915 18344 20181213_JW_Orientia_Karp_2_2 58.781 14.167 35173000 0 0 11158000 6099300 12817000 0 5098600 0 762 2000 668 4850;4851;4852;4853 3168 3168 1234;2105 1 ASNLENSTYDLYTIPK Unmodified 1827.8891 0.88905915 1704 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 56.854 57.037 2 5.9312E-07 23462 20181213_JW_Orientia_Karp_1_2 177.36 129.17 28578000 10284000 7891200 10403000 0 0 0 0 0 763 1704 669 4854;4855;4856 3169;3170;3171 3170 3 ASNVHDQINILK Unmodified 1350.7256 0.72556306 1261 Karp_01021 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 37.495 37.845 3 0.0047843 11082 20181213_JW_Orientia_Karp_2_1 92.943 49.525 64412000 15370000 25842000 20048000 2569300 0 0 583150 0 764 1261 670 4857;4858;4859;4860;4861;4862 3172;3173;3174;3175 3174 4 ASPATQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVK Unmodified 3725.988 0.98799192 465 B2R7B5;Q07666-3;Q07666 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 72.38 72.429 3 0.0028982 32918 20181213_JW_Orientia_Karp_1_3 51.415 40.414 97090000 39801000 0 34888000 0 0 0 22400000 0 765 465 671 4863;4864;4865 3176;3177;3178 3177 3 ASPINNQSLAGLVER Unmodified 1567.8318 0.83181904 1388 Karp_02136 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 54.48 54.783 2 0.026806 22378 20181213_JW_Orientia_Karp_1_1 79.614 45.653 19972000 7794000 9239300 0 0 2329800 0 0 608690 766 1388 672 4866;4867;4868;4869 3179 3179 1 ASQSQGIQQLLQAEK Acetyl (Protein N-term) 1669.8635 0.8635131 161 A0A024R883;O75348;F2Z307;O95670-2;O95670 ATP6V1G1;ATP6V1G2-DDX39B;ATP6V1G2 V-type proton ATPase subunit G 1;V-type proton ATPase subunit G 2 yes no 1 0 0 0 By MS/MS By MS/MS 1 1 66.64 66.689 2 2.8558E-12 29699 20181213_JW_Orientia_Karp_1_1 204.13 106.22 0 0 0 0 0 0 0 0 0 767 161 673 4870;4871 3180;3181 3180 2 ASREEILAQAK Unmodified 1214.6619 0.66190017 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 1 By matching By MS/MS 1 1 27.613 27.788 3 0.038325 6925 20181213_JW_Orientia_Karp_1_2 75.788 26.508 40867000 17597000 23270000 0 0 0 0 0 0 768 47 674 4872;4873 3182 3182 1 ASSESISENLSTAITSK Unmodified 1723.8476 0.84758827 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 49.836 50.181 2 8.0847E-32 17581 20181213_JW_Orientia_Karp_2_1 236.05 161.09 244370000 42339000 64058000 45107000 26368000 34214000 17480000 2825800 11975000 769 1428 675 4874;4875;4876;4877;4878;4879;4880;4881 3183;3184;3185;3186;3187;3188;3189;3190 3186 8 ASSGMTRRDPLANK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1561.7519 0.75185416 1963 Q9BTZ2-8 yes yes 1 1 1 2 By MS/MS 1 58.863 59.312 2 0.032079 22781 20181213_JW_Orientia_Karp_2_1 52.693 10.988 0 0 0 0 0 0 0 0 0 770 1963 676 4882 3191 3191 1212 1 ASSVTTFTGEPNTCPR Unmodified 1723.7835 0.78354822 975 H0YFA4;Q53FN1;P52943;P52943-2 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 41.444 41.788 2 5.1254E-49 13726 20181213_JW_Orientia_Karp_1_3 256.95 203.38 244600000 24387000 41193000 23084000 64959000 0 25338000 49196000 16446000 771 975 677 4883;4884;4885;4886;4887;4888;4889;4890;4891 3192;3193;3194;3195;3196;3197;3198;3199;3200 3194 8 ASSVTTFTGEPNTCPR Deamidation (NQ) 1724.7676 0.76756381 975 H0YFA4;Q53FN1;P52943;P52943-2 CRIP2 Cysteine-rich protein 2 yes no 0 1 0 0 By MS/MS 1 43.506 43.856 2 0.0053993 15058 20181213_JW_Orientia_Karp_1_2 129.34 82.041 0 0 0 0 0 0 0 0 0 772 975 677 4892 3201 3201 344 1 ASWSSLSMDEK Unmodified 1239.5442 0.5441528 1592 P13073;Q86WV2;H3BN72;H3BNV9;H3BPG0 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 46.901 47.084 2 0.0037888 16885 20181213_JW_Orientia_Karp_1_2 110.38 65.518 24671000 13262000 5979500 5429400 0 0 0 0 0 773 1592 678 4893;4894;4895 3202 3202 1 ASYAQQPAESR Unmodified 1206.5629 0.56291441 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 23.824 24.204 2 0.00068885 5402 20181213_JW_Orientia_Karp_1_2 133.91 84.376 22019000 0 8465500 6135400 1067000 993390 913880 2528700 1915200 774 195 679 4896;4897;4898;4899;4900;4901;4902;4903 3203;3204 3204 2 ASYDVSDSGQLEHVQPWSV Unmodified 2102.9545 0.95451296 1760 Q01813;Q01813-2;Q49A78;B1APP8;O14943;Q8WTZ9 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 62.924 63.166 2 7.1014E-13 27319 20181213_JW_Orientia_Karp_1_2 191.01 145.25 82132000 32762000 15743000 23888000 0 0 5840500 0 3898500 775 1760 680 4904;4905;4906;4907;4908 3205;3206;3207;3208 3206 4 ASYVAPLTAQPATYR Unmodified 1607.8308 0.83075641 1949 Q96PK6;Q59GV2 RBM14 RNA-binding protein 14 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.926 50.272 2 0.014837 17634 20181213_JW_Orientia_Karp_2_1 91.961 53.993 99876000 23070000 34479000 21751000 6660000 4331800 4541100 1398200 3644200 776 1949 681 4909;4910;4911;4912;4913;4914;4915;4916 3209 3209 1 ATAAPAGAPPQPQDLEFTK Unmodified 1908.9581 0.95814177 1621 P22695;H3BRG4;H3BSJ9;H3BUE4;H3BUI9 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.941 52.334 2 0.00075592 20694 20181213_JW_Orientia_Karp_1_1 115.26 79.485 81397000 19614000 22511000 30619000 3653100 0 0 4912900 86846 777 1621 682 4917;4918;4919;4920;4921;4922 3210;3211;3212 3210 3 ATAEGIEQLAQAINNTGGSDAVSLR Unmodified 2485.2409 0.24085857 1104 Karp_00281 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 2 2 2 1 68.695 68.892 2;3 1.2168E-100 31068 20181213_JW_Orientia_Karp_1_1 297.55 249.92 520800000 105210000 133570000 115590000 9784400 54955000 33513000 64100000 4079400 778 1104 683 4923;4924;4925;4926;4927;4928;4929;4930;4931;4932;4933;4934;4935;4936;4937;4938 3213;3214;3215;3216;3217;3218;3219;3220;3221;3222;3223 3213 11 ATAEGIEQLAQAINNTGGSDAVSLR Deamidation (NQ) 2486.2249 0.22487416 1104 Karp_00281 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 3 1 2 1 2 2 1 1 68.908 69.046 2;3 5.8156E-53 29940 20181213_JW_Orientia_Karp_1_1 251.74 205.26 248290000 89464000 27573000 50032000 8219500 25621000 14390000 26987000 6005900 779 1104 683 4939;4940;4941;4942;4943;4944;4945;4946;4947;4948;4949;4950;4951 3224;3225;3226 3224 456;457 2 ATAEVLNIGK Acetyl (Protein N-term) 1056.5815 0.58152458 252 E9PBS1;A0A024RD93;P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase no no 1 0 0 0 By MS/MS By matching By matching 1 1 1 63.961 64.044 2 0.0005658 28170 20181213_JW_Orientia_Karp_1_1 132.01 73.029 28313000 23190000 0 3487200 0 0 1636000 0 0 780 252 684 4952;4953;4954 3227 3227 1 ATAPQTQHVSPMR Oxidation (M) 1438.6987 0.69869638 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;E9PK01;P29692-4;Q71RH4;Q9H7G6;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PL71;E9PK06 EEF1D Elongation factor 1-delta yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 21.568 21.913 2 0.0097542 4469 20181213_JW_Orientia_Karp_1_2 96.334 61.613 11070000 1137300 1741000 2255600 1086600 555650 1135800 1602300 1555900 781 1641 685 4955;4956;4957;4958;4959;4960;4961;4962 3228;3229 3228 1266 2 ATAPQTQHVSPMR Unmodified 1422.7038 0.70378176 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;E9PK01;P29692-4;Q71RH4;Q9H7G6;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PL71;E9PK06 EEF1D Elongation factor 1-delta yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 26.006 26.378 3 0.030871 6302 20181213_JW_Orientia_Karp_1_3 69.229 38.324 54736000 0 0 20545000 16140000 8272500 4575000 0 5203000 782 1641 685 4963;4964;4965;4966;4967 3230 3230 1 ATATSCRPCPCPYIDASR Unmodified 2081.9081 0.90811358 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 36.343 36.686 3 0.033438 11120 20181213_JW_Orientia_Karp_1_2 80.508 59.569 84745000 17960000 21406000 28289000 0 0 825360 11596000 4668500 783 195 686 4968;4969;4970;4971;4972;4973 3231 3231 0 ATAVMPDGQFK Oxidation (M) 1179.5594 0.55940893 1773 Q06830;B2R4P2 PRDX1 Peroxiredoxin-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 34.607 34.897 2 0.00033516 9976 20181213_JW_Orientia_Karp_3_1 145.46 98.467 136480000 40570000 30864000 32974000 0 13126000 0 18944000 0 784 1773 687 4974;4975;4976;4977;4978;4979 3232;3233;3234;3235;3236;3237 3236 1385 6 ATAVMPDGQFK Unmodified 1163.5645 0.56449431 1773 Q06830;B2R4P2 PRDX1 Peroxiredoxin-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 42.398 42.691 2 0.021114 14805 20181213_JW_Orientia_Karp_1_1 84.658 47.467 217700000 96143000 54776000 40170000 2682400 3834100 2568000 17524000 0 785 1773 687 4980;4981;4982;4983;4984;4985;4986 3238 3238 1 ATCAPQHGAPGPGPADASK Unmodified 1788.8213 0.82133071 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4E2F9;Q86TQ3 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 24.672 25.03 3 0.0081631 6094 20181213_JW_Orientia_Karp_1_1 76.068 57.613 37577000 7228300 12337000 3866900 2343800 1011900 2363300 3307500 5118600 786 1615 688 4987;4988;4989;4990;4991;4992;4993;4994 3239;3240;3241;3242;3243 3239 5 ATDGVTLTGINQTGDQSLPSK Unmodified 2102.0491 0.049141622 103 A0A024R4X1;Q6FIA3;Q9UNF0-2;Q9UNF0 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 51.865 52.04 2 1.8182E-05 20539 20181213_JW_Orientia_Karp_1_1 151.44 85.967 8800600 3485500 5315100 0 0 0 0 0 0 787 103 689 4995;4996 3244;3245 3244 2 ATDTALNDVVNAIK Unmodified 1443.7569 0.75692277 1061 Karp_00005 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 59.942 60.157 2 8.7148E-59 25580 20181213_JW_Orientia_Karp_1_1 276.95 179.38 98924000 94859000 0 3132400 932640 0 0 0 0 788 1061 690 4997;4998;4999 3246 3246 1 ATDTALNDVVNAIK Deamidation (NQ) 1444.7409 0.74093835 1061 Karp_00005 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 3 3 1 3 3 3 1 58.654 58.959 2 1.6098E-05 25949 20181213_JW_Orientia_Karp_1_2 176.78 101.39 180820000 46390000 57105000 28053000 9457400 21554000 14150000 1891100 2218100 789 1061 690 5000;5001;5002;5003;5004;5005;5006;5007;5008;5009;5010;5011;5012;5013;5014;5015;5016;5017 3247;3248;3249;3250;3251 3248 390;391 5 ATDTALNDVVNAIKK Unmodified 1571.8519 0.85188578 1061 Karp_00005 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 51.831 52.081 3 0.040076 18863 20181213_JW_Orientia_Karp_2_3 57.106 42.879 38695000 4261000 8972900 6419100 6646400 7752600 4643000 0 0 790 1061 691 5018;5019;5020;5021;5022;5023 3252;3253 3253 2 ATDTSQGELVHPK Acetyl (Protein N-term) 1423.6943 0.69432251 1846 Q5SSJ5;X6RGJ2;B0QZK8;Q5SSJ5-5;B0QZK9 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 38.08 38.247 2 3.3339E-11 12424 20181213_JW_Orientia_Karp_1_1 196.67 141.6 31285000 17297000 11980000 0 0 2007800 0 0 0 791 1846 692 5024;5025;5026;5027 3254;3255;3256 3254 3 ATEEFIIR Acetyl (Protein N-term) 1019.5288 0.52876073 1800 X5D7K9;X5DNU0;X5D2M8;Q14764;B4DP93;B4DXN0;B4DDR2;X5D7S8;X5DP24;H3BUK7;H3BNF6;H3BRL2;H3BQK6;X5DP17;X5D7R7;H3BP76;H3BPZ2;H3BNF2;H3BUP3;H3BQE7 MVP Major vault protein yes no 1 0 0 0 By MS/MS By MS/MS 1 1 67.092 67.192 2 0.0041191 29963 20181213_JW_Orientia_Karp_1_1 130.27 61.85 13076000 6653000 0 6423300 0 0 0 0 0 792 1800 693 5028;5029 3257;3258 3257 2 ATEMVEVGADDDEGGAER Oxidation (M) 1865.7585 0.75851526 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5;Q6NZI2-2;Q6NZI2-3 PTRF Polymerase I and transcript release factor yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 36.037 36.45 2 1.7624E-31 10974 20181213_JW_Orientia_Karp_1_2 243.49 174.97 5320900 0 0 3125800 620260 0 260740 1314100 0 793 1868 694 5030;5031;5032;5033;5034;5035 3259;3260;3261;3262;3263 3259 1477 5 ATENDIANFFSPLNPIR Unmodified 1917.9585 0.95847612 17 A0A024QZP1;B4DHY1;Q53F48;A0A024QZK8;P31942-4;P31942-3;P31942-2;P31942;P31942-6;P31942-5 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 2 73.722 73.757 2;3 1.4289E-08 34118 20181213_JW_Orientia_Karp_1_2 206.45 147.7 125030000 37330000 26677000 46256000 712370 0 0 14052000 0 794 17 695 5036;5037;5038;5039;5040;5041;5042;5043 3264;3265;3266;3267 3264 3 ATENDIYNFFSPLNPVR Unmodified 1995.969 0.96904081 888;151 A0A024R7T3;P52597;B4DKS8;B4DP51;H0YBG7;Q68DG4;H0YBD7;E9PCY7;G8JLB6;P31943;H0YB39 HNRPF;HNRNPF;HNRNPH1;DKFZp686A15170 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 73.634 73.676 2 1.3252E-41 34066 20181213_JW_Orientia_Karp_1_1 242.4 177.76 117870000 46204000 26501000 28593000 989560 0 0 10379000 5207300 795 151;888 696 5044;5045;5046;5047;5048;5049 3268;3269;3270;3271 3268 4 ATENDIYNFFSPLNPVR Deamidation (NQ) 1996.9531 0.95305639 888;151 A0A024R7T3;P52597;B4DKS8;B4DP51;H0YBG7;Q68DG4;H0YBD7;E9PCY7;G8JLB6;P31943;H0YB39 HNRPF;HNRNPF;HNRNPH1;DKFZp686A15170 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed no no 0 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 74.64 74.683 2 2.1141E-16 34650 20181213_JW_Orientia_Karp_1_1 203.85 140.25 60625000 21095000 9364500 19645000 0 2226800 0 4857300 3436400 796 151;888 696 5050;5051;5052;5053;5054;5055 3272;3273;3274 3272 61 3 ATEPVIAFYEK Unmodified 1266.6496 0.64960415 1540 Q6FGX9;Q53EY8;Q5T9B7;P00568;H0Y4J6 AK1 Adenylate kinase isoenzyme 1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 53.892 54.25 2 0.0026254 19783 20181213_JW_Orientia_Karp_2_2 115.23 78.675 88572000 26048000 14684000 12190000 10120000 9559900 11502000 461840 4006200 797 1540 697 5056;5057;5058;5059;5060;5061;5062;5063 3275;3276;3277;3278 3277 4 ATFIIDQEFVLR Unmodified 1450.782 0.78201531 1399 Karp_02188 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.995 70.14 2 1.4041E-64 31783 20181213_JW_Orientia_Karp_1_2 294.15 192.69 386650000 84872000 35949000 93244000 17460000 34184000 22145000 75954000 22839000 798 1399 698 5064;5065;5066;5067;5068;5069;5070;5071 3279;3280;3281;3282;3283;3284;3285;3286;3287 3280 9 ATFITLLSK Unmodified 992.59063 0.59063271 1106 Karp_00284 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.228 60.438 2 1.3551E-05 23034 20181213_JW_Orientia_Karp_2_2 195.05 128.25 187400000 57769000 12233000 80315000 0 19401000 17685000 0 0 799 1106 699 5072;5073;5074;5075;5076;5077 3288;3289;3290;3291;3292;3293 3291 6 ATFMVGSYGPRPEEYEFLTPVEEAPK Unmodified 2943.4001 0.40006133 205 H0YGX7;A0A024RAS5;P52566 ARHGDIB Rho GDP-dissociation inhibitor 2 yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 66.827 66.877 3 0.0012958 29814 20181213_JW_Orientia_Karp_1_1 86.987 60.114 47276000 18693000 0 25449000 0 0 3134000 0 0 800 205 700 5078;5079;5080 3294 3294 1 ATFSEFAAK Unmodified 970.476 0.47599688 1493 O14776-2;O14776;G3V220 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 41.309 41.639 2 0.010479 13633 20181213_JW_Orientia_Karp_1_3 93.143 34.539 44268000 12490000 10719000 14263000 956680 0 0 5838600 0 801 1493 701 5081;5082;5083;5084;5085 3295 3295 1 ATFSSVPLAASISAVSLEVAQPGPSNRPR Unmodified 2908.5407 0.54066941 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 68.304 68.483 3 0.017225 24209 20181213_JW_Orientia_Karp_3_1 55.631 30.799 180420000 79774000 11918000 44165000 13587000 8921000 5433200 16621000 0 802 195 702 5086;5087;5088;5089;5090;5091;5092 3296 3296 1 ATFYGEQVDYYK Unmodified 1482.6667 0.66671078 235 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 49.335 49.609 2 0.00066062 18324 20181213_JW_Orientia_Karp_1_3 144.55 111.51 37521000 0 21284000 16237000 0 0 0 0 0 803 235 703 5093;5094 3297;3298 3298 2 ATFYLNVLEQK Deamidation (NQ) 1325.6867 0.68671794 541 B3KW21;Q8WUI6;Q9Y678 COPG;COPG1 Coatomer subunit gamma-1 yes no 0 1 0 0 By MS/MS 1 61.396 61.595 2 0.014149 26020 20181213_JW_Orientia_Karp_1_3 99.788 22.596 10888000 0 0 10888000 0 0 0 0 0 804 541 704 5095 3299 3299 197 1 ATGANATPLDFPSK Acetyl (Protein N-term) 1430.7042 0.70415892 107 A0A024R588;A0A024R566;B4DJU4;A0A024R5D9;A0A024R572;Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;B4DSE4;Q14820;F8WEV5 SF1 Splicing factor 1 yes no 1 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 64.089 64.218 2 0.003844 24981 20181213_JW_Orientia_Karp_2_2 113.07 76.375 37341000 13162000 6442200 6321800 0 7199900 4214800 0 0 805 107 705 5096;5097;5098;5099;5100 3300;3301;3302;3303 3302 4 ATGEADVEFVTHEDAVAAMSK Unmodified 2176.9947 0.99466321 17 A0A024QZP1;B4DHY1;Q53F48;A0A024QZK8;P31942-4;P31942-3;P31942-2;P31942;P31942-6;P31942-5 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 52.172 52.442 3 0.036815 20469 20181213_JW_Orientia_Karp_1_2 62.589 41.939 49543000 17871000 7388800 13011000 5876500 0 5395300 0 0 806 17 706 5101;5102;5103;5104;5105 3304 3304 1 ATGEAGMPQGEMLGKQEPQTSSSPK 2 Oxidation (M) 2577.1687 0.16868119 1900 Q8IUW6 CLSTN3 yes yes 0 0 2 1 By MS/MS By matching By matching By matching 1 1 1 1 78.595 78.556 2 0.01407 37497 20181213_JW_Orientia_Karp_1_2 60.968 9.9635 3409600000 0 805670000 1437200000 416860000 0 749800000 0 0 807 1900 707 5106;5107;5108;5109 3305 3305 1493;1494 0 ATGGGLSSVGGGSSTIK Unmodified 1434.7314 0.7314363 793 CON__P04259;P04259;B4DKV4 KRT6B Keratin, type II cytoskeletal 6B yes no 0 0 0 0 By MS/MS By MS/MS 1 1 35.83 36.204 2 0.014635 10838 20181213_JW_Orientia_Karp_1_3 87.863 16.514 8639900 0 0 6492700 2147200 0 0 0 0 + 808 793 708 5110;5111 3306;3307 3306 2 ATGPPVSELITK Unmodified 1211.6762 0.67615325 1604 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 1 1 1 48.253 48.548 2 0.00026003 18473 20181213_JW_Orientia_Karp_1_2 157.97 98.818 13449000000 3993300000 4366500000 3207100000 834100000 345920000 697640000 0 4104600 809 1604 709 5112;5113;5114;5115;5116;5117;5118;5119;5120 3308;3309;3310;3311;3312 3308 5 ATGPPVSELITKAVAASK Unmodified 1738.9829 0.98289996 1604 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 1 By MS/MS 1 56.81 57.16 3 0.025712 23510 20181213_JW_Orientia_Karp_1_2 82.349 61.96 0 0 0 0 0 0 0 0 0 810 1604 710 5121 3313 3313 1 ATGQRPHHFLR Unmodified 1318.7007 0.70068571 138 A0A024R6K8;P23381;P23381-2;B4DTK8;G3V277;G3V3H8;G3V3Y5;G3V423;G3V3P2;G3V227;G3V5U1;G3V456;G3V2Y7 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 16.769 16.943 3 0.040895 2791 20181213_JW_Orientia_Karp_1_3 77.744 39.776 34200000 16822000 5344900 10868000 1165000 0 0 0 0 811 138 711 5122;5123;5124;5125 3314 3314 1 ATGSYIAGTNGNPNGLVPMLRVYNNTAR Deamidation (NQ) 2921.4454 0.44538881 675 B4E0I8 Ribonucleoside-diphosphate reductase yes yes 0 1 0 1 By MS/MS By matching By matching 1 1 1 77.285 77.3 3 0.024998 36455 20181213_JW_Orientia_Karp_1_1 59.561 29.917 23601000 11661000 5873500 6066200 0 0 0 0 0 812 675 712 5126;5127;5128 3315 3315 233 0 ATGVFTTLQPGSSIPPYNTEVTETTIVITWTPAPR Unmodified 3744.9251 0.92505731 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching 1 1 74.874 74.899 3 0.012123 34877 20181213_JW_Orientia_Karp_1_1 42.845 28.471 16646000 11499000 5147400 0 0 0 0 0 0 813 85 713 5129;5130 3316 3316 1 ATIAGGGVIPHIHK Unmodified 1369.783 0.78301836 1580 Q71UI9;P0C0S5;Q71UI9-3;Q71UI9-4 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 36.067 36.401 3 0.0045421 10924 20181213_JW_Orientia_Karp_1_3 94.538 45.072 1369800000 456080000 613200000 161120000 3058800 9163400 0 127170000 0 814 1580 714 5131;5132;5133;5134;5135;5136 3317;3318;3319;3320;3321 3319 5 ATIANFLLSEASK Unmodified 1363.7347 0.73473076 1431 Karp_02388 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 64.58 64.718 2 3.827E-11 28327 20181213_JW_Orientia_Karp_1_2 225.55 163.78 60170000 26702000 14160000 0 0 10050000 9258700 0 0 815 1431 715 5137;5138;5139;5140 3322 3322 1 ATISALEAK Unmodified 902.5073 0.50729701 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 36.156 36.444 2 0.0090156 11079 20181213_JW_Orientia_Karp_1_2 96.034 30.568 18331000 10596000 7365900 0 168270 200910 0 0 0 816 944 716 5141;5142;5143;5144 3323 3323 1 ATLDNIVK Unmodified 872.49673 0.49673232 1449 Karp_02529 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 40.789 40.979 2 0.030691 13223 20181213_JW_Orientia_Karp_1_3 82.241 18.934 41069000 17777000 9868900 11116000 0 2046500 260190 0 0 817 1449 717 5145;5146;5147;5148;5149 3324 3324 1 ATLECTPPELSADIADK Unmodified 1829.8717 0.87169453 1360 Karp_01811 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 55.631 56.003 2 0.00014828 22341 20181213_JW_Orientia_Karp_1_3 140.33 81.697 82976000 0 0 50867000 11818000 10287000 9548500 0 455620 818 1360 718 5150;5151;5152;5153;5154 3325;3326;3327 3325 3 ATLIDGSFHEVDSSVLAFEIAAK Unmodified 2419.2271 0.22710599 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.247 72.325 3 2.0161E-21 33253 20181213_JW_Orientia_Karp_1_2 193.42 138.21 407360000 94882000 51052000 96103000 10942000 56469000 20460000 77451000 0 819 1094 719 5155;5156;5157;5158;5159;5160;5161 3328;3329;3330;3331;3332;3333;3334 3329 7 ATMELYQISQR Oxidation (M) 1354.6551 0.65510023 236 A0A024RC76;Q96AZ6;H0YMM4;Q59F22 ISG20 Interferon-stimulated gene 20 kDa protein yes no 0 0 1 0 By MS/MS 1 41.372 41.722 2 0.033322 13888 20181213_JW_Orientia_Karp_1_2 89.9 25.189 0 0 0 0 0 0 0 0 0 820 236 720 5162 3335 3335 1 ATMQNLNDR Oxidation (M) 1077.4873 0.48730662 807 CON__Q04695;CON__Q9QWL7;Q04695;K7EPJ9;B4E2P9;B4DJM5;J3QR55;Q8TC04;CON__Q9C075;CON__Q99PS0;A0A024R1X9;Q9C075 KRT17;KRT23 Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 23 yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 18.775 19.009 2 0.023697 3441 20181213_JW_Orientia_Karp_3_1 78.939 39.276 1433400 749690 199820 0 0 0 0 483910 0 + 821 807 721 5163;5164;5165 3336 3336 470 1 ATMYNLLAYIK Unmodified 1299.6897 0.68969482 1495 Q5T765;O14879 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 68.904 69.12 2 0.0029913 31417 20181213_JW_Orientia_Karp_1_1 113.71 58.176 8380900 4629500 0 0 0 1142200 0 1942400 666730 822 1495 722 5166;5167;5168;5169 3337 3337 1 ATNANLEIVK Unmodified 1071.5924 0.59242362 1256 Karp_00936 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.127 39.398 2 1.7792E-05 12124 20181213_JW_Orientia_Karp_3_1 162.64 92.638 211110000 64809000 61379000 58057000 0 6898500 0 19970000 0 823 1256 723 5170;5171;5172;5173;5174;5175 3338;3339;3340;3341;3342;3343 3342 6 ATNFLAHEK Acetyl (Protein N-term) 1071.5349 0.53490874 1641 P29692;P29692-3;E9PQZ1;E9PK01;P29692-4;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PL71;E9PN91;E9PK06;E9PKK3;E9PK72;E9PNW6;E9PJD0 EEF1D Elongation factor 1-delta yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 45.437 45.763 2 0.00056776 15165 20181213_JW_Orientia_Karp_2_1 153.97 75.706 613670000 191950000 192900000 134540000 48862000 13747000 24986000 5098500 1582200 824 1641 724 5176;5177;5178;5179;5180;5181;5182;5183;5184;5185 3344;3345;3346;3347;3348;3349;3350;3351;3352;3353 3349 9 ATNGDTFLGGEDFDMR Oxidation (M);Deamidation (NQ) 1761.7152 0.71519389 1074 Karp_00050 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 1 1 58.822 59.099 2;3 9.3276E-20 24646 20181213_JW_Orientia_Karp_1_2 219.97 151.35 903380000 269600000 224100000 272000000 122780000 5358300 8147100 1404600 0 825 1074 725 5186;5187;5188;5189;5190;5191;5192;5193;5194;5195;5196 3354;3355;3356;3357;3358;3359 3355 411 593 6 ATNGDTFLGGEDFDMR Deamidation (NQ) 1745.7203 0.72027926 1074 Karp_00050 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 1 63.973 64.227 2 1.8908E-78 28883 20181213_JW_Orientia_Karp_1_1 300.49 221.93 1052900000 266440000 301070000 294850000 15855000 62033000 48413000 58989000 5300100 826 1074 725 5197;5198;5199;5200;5201;5202;5203;5204;5205;5206;5207;5208;5209;5210 3360;3361;3362;3363;3364;3365;3366;3367;3368;3369;3370;3371;3372 3361 411 11 ATNQVFDINK Deamidation (NQ) 1149.5666 0.5666028 1324 Karp_01330 yes yes 0 1 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.905 48.198 2 0.011422 15541 20181213_JW_Orientia_Karp_3_2 100.25 21.729 131560000 22735000 0 31637000 24319000 12299000 11861000 0 28713000 827 1324 726 5211;5212;5213;5214;5215;5216;5217 3373;3374;3375;3376;3377 3377 766 5 ATNVVMNYSEIESK Oxidation (M) 1599.745 0.74503745 1799 Q14677;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.237 42.554 2 1.4012E-11 14687 20181213_JW_Orientia_Karp_1_1 195.72 137.02 48256000 12800000 7941400 9842500 3856200 0 3111200 10704000 0 828 1799 727 5218;5219;5220;5221;5222;5223;5224 3378;3379;3380;3381;3382;3383 3378 1444 6 ATNVVMNYSEIESK Unmodified 1583.7501 0.75012283 1799 Q14677;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 48.224 48.582 2 2.2608E-17 17554 20181213_JW_Orientia_Karp_1_3 212.1 166.19 93863000 20959000 31617000 22283000 7418000 4332600 0 827430 6426600 829 1799 727 5225;5226;5227;5228;5229;5230;5231 3384;3385;3386;3387;3388;3389 3386 6 ATPYAAQVIVEK Unmodified 1288.7027 0.70270235 1220 Karp_00887 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.976 46.249 2 0.0085789 16134 20181213_JW_Orientia_Karp_1_3 100.09 37.263 231360000 53408000 60210000 56866000 24324000 10077000 9608000 0 16870000 830 1220 728 5232;5233;5234;5235;5236;5237;5238 3390;3391;3392;3393;3394;3395;3396 3392 7 ATQQQHDFTLTQTADGR Unmodified 1916.8977 0.89766678 878 E7EUY0;P78527-2;P78527 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 35.26 35.602 3 0.0011614 11100 20181213_JW_Orientia_Karp_1_1 104.16 59.703 51951000 12430000 26774000 6427900 5162400 0 0 0 1155700 831 878 729 5239;5240;5241;5242;5243 3397;3398;3399;3400 3397 4 ATSFLLALEPELEAR Unmodified 1658.8879 0.88793694 1554 Q6IBR0;Q53EP4;P04843;Q96HX3;F8WF32 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 0 0 0 0 By MS/MS 1 73.079 73.079 2 0.0038527 33678 20181213_JW_Orientia_Karp_1_1 135.1 67.713 0 0 0 0 0 0 0 0 0 832 1554 730 5244 3401 3401 1 ATSNVFAMFDQSQIQEFK Oxidation (M) 2105.9728 0.97280556 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;P24844-2;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 64.566 64.782 2 0 27842 20181213_JW_Orientia_Karp_1_3 426.3 340.63 644390000 202920000 131520000 173690000 0 78789000 53089000 3034800 1342900 833 1498;1626;1831 731 5245;5246;5247;5248;5249;5250;5251 3402;3403;3404;3405;3406;3407;3408;3409 3403 1102 8 ATSNVFAMFDQSQIQEFK Unmodified 2089.9779 0.97789093 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;P24844-2;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 71.638 71.738 2 0 32809 20181213_JW_Orientia_Karp_1_1 487.26 399.11 619290000 237520000 185690000 0 35651000 51014000 0 109410000 0 834 1498;1626;1831 731 5252;5253;5254;5255;5256 3410;3411;3412;3413;3414 3410 5 ATSNVFAMFDQSQIQEFK Oxidation (M);Deamidation (NQ) 2106.9568 0.95682114 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;P24844-2;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 1 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 70.627 70.76 2 0.021369 31418 20181213_JW_Orientia_Karp_1_2 88.282 53.078 11445000 0 0 2941300 0 3806100 0 4697500 0 835 1498;1626;1831 731 5257;5258;5259;5260 3415;3416 3415 1005 1102 2 ATTLSNAVSSLASTGLSLTK Unmodified 1921.0368 0.036786022 116 Q8N6B4;B5BU72;A0A024R5L7;A8K5U9;A0A024R5P1;Q13492-4;Q13492-3;Q13492-2;Q13492-5;Q13492 MLL/CALM fusion;PICALM Phosphatidylinositol-binding clathrin assembly protein yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 69.309 69.434 2 4.5617E-12 31332 20181213_JW_Orientia_Karp_1_2 177.66 136.28 20239000 3505400 7531700 4004100 0 0 0 5197500 0 836 116 732 5261;5262;5263;5264 3417;3418;3419;3420 3417 4 ATVHIQVNDVNEYAPVFKEK 2 Deamidation (NQ) 2302.1481 0.14812739 692 B4E3Q1;O94985-2;O94985 CLSTN1 Calsyntenin-1;Soluble Alc-alpha;CTF1-alpha yes no 0 2 0 1 By MS/MS 1 64.238 64.689 3 0.033634 22333 20181213_JW_Orientia_Karp_3_1 61.015 14.767 0 0 0 0 0 0 0 0 0 837 692 733 5265 3421 3421 1584 1 ATVNANNNISAEQK Unmodified 1472.7219 0.72193424 1393 Karp_02145 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 27.101 27.478 2 1.8203E-05 6763 20181213_JW_Orientia_Karp_1_3 173.19 29.814 12345000 2887900 0 3453700 1052000 956090 0 3075000 920120 838 1393 734 5266;5267;5268;5269;5270;5271;5272 3422;3423;3424;3425;3426;3427;3428 3424 7 ATVNANNNISAEQK Deamidation (NQ) 1473.7059 0.70594983 1393 Karp_02145 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 29.95 30.15 2 0.00096764 7556 20181213_JW_Orientia_Karp_3_1 155.88 76.736 5366300 3265100 1694500 0 0 0 406740 0 0 839 1393 734 5273;5274;5275;5276;5277;5278 3429;3430;3431;3432 3432 893;894 4 ATVQQLEGR Acetyl (Protein N-term) 1042.5407 0.5407224 871 E7DVW5;Q01469 FABP5 Fatty acid-binding protein, epidermal yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.812 50.061 2 0.00072817 17524 20181213_JW_Orientia_Karp_2_2 142.36 59.611 128220000 28629000 23233000 25373000 27981000 11428000 11576000 0 0 840 871 735 5279;5280;5281;5282;5283;5284;5285 3433;3434;3435;3436;3437;3438;3439 3437 7 ATYATSDFTLLELNNAANPAFNLFWAGWDRR Unmodified 3544.7164 0.71640194 801 CON__P15636 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 76.215 76.189 3 2.2952E-07 31257 20181213_JW_Orientia_Karp_2_3 108.94 95.418 68532000 0 0 0 19260000 23872000 13067000 12333000 0 + 841 801 736 5286;5287;5288;5289 3440;3441;3442 3442 3 AVAALLTIPEAEK Unmodified 1324.7602 0.76021723 395 B3KM30;B3KMG3;A8K8U1;Q86VP6-2;Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 59.751 59.952 2 0.0060681 25679 20181213_JW_Orientia_Karp_1_1 107.11 63.817 25846000 16019000 7867300 0 0 0 1959600 0 0 842 395 737 5290;5291;5292 3443;3444 3443 2 AVAEQIPLLVQGVR Unmodified 1491.8773 0.87731267 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 63.968 64.017 3 0.00071389 28186 20181213_JW_Orientia_Karp_1_1 126.32 94.793 11268000 9244100 0 2024000 0 0 0 0 0 843 2016 738 5293;5294;5295 3445;3446 3445 2 AVAFQNPQTHVIENLHAAAYR Unmodified 2349.1978 0.19781197 1621 P22695;H3BRG4;H3BSJ9;H3BP04 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 47.157 47.519 3 0.0044779 15222 20181213_JW_Orientia_Karp_3_2 81.878 47.704 26898000 6136800 9439900 6604800 0 0 0 1720400 2996000 844 1621 739 5296;5297;5298;5299;5300 3447;3448;3449 3449 3 AVAGNISDPGLQK Unmodified 1268.6725 0.67246486 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13;B4DKC9 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 38.675 38.968 2 0.0010484 12405 20181213_JW_Orientia_Karp_1_2 145.46 91.489 163590000 47317000 69235000 36308000 5012400 1890000 0 0 3826400 845 19 740 5301;5302;5303;5304;5305;5306 3450;3451 3451 2 AVALFPSISAAQK Unmodified 1301.7343 0.73433683 1305 Karp_01246 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 58.457 58.657 2 0.033554 24438 20181213_JW_Orientia_Karp_1_2 76.927 37.674 117150000 56372000 27837000 21189000 0 0 11749000 0 0 846 1305 741 5307;5308;5309;5310 3452 3452 1 AVALFTAGTEQAPK Unmodified 1402.7456 0.7456298 1196 Karp_00815 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 49.545 49.795 2 1.0323E-13 17382 20181213_JW_Orientia_Karp_2_1 203.03 141.34 101770000 26488000 29035000 26728000 7473000 5461500 6585800 0 0 847 1196 742 5311;5312;5313;5314;5315;5316 3453;3454;3455;3456 3456 3 AVANQTSATFLR Unmodified 1277.6728 0.67279921 1725 Q53XL8;Q53HB3;P62191-2;P62191 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 41.918 42.218 2 3.8738E-05 14080 20181213_JW_Orientia_Karp_1_2 169.99 82.297 38029000 16521000 9147000 9101000 0 0 0 3260100 0 848 1725 743 5317;5318;5319;5320 3457 3457 1 AVCMLSNTTAIAEAWAR Oxidation (M) 1879.8921 0.89205282 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;B4DN58;Q15670;Q71U36-2;Q71U36;Q1ZYQ1;Q13748;B4DQK4;Q9UQM3;Q13748-2;Q6PEY2;C9J2C0;Q9NY65-2;Q9NY65;Q7Z3M3;V9GZ17 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E;TUBA8;DKFZp686L04275 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain no no 0 0 1 0 By MS/MS By matching By MS/MS By matching 2 2 2 1 59.266 59.496 2;3 9.0441E-05 24620 20181213_JW_Orientia_Karp_1_3 142.85 100.01 54364000 19954000 12575000 19036000 0 0 0 0 2799100 849 512;1887 744 5321;5322;5323;5324;5325;5326;5327 3458;3459;3460;3461 3460 329 4 AVCMLSNTTAIAEAWAR Unmodified 1863.8971 0.89713819 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;B4DN58;Q15670;Q71U36-2;Q71U36;Q1ZYQ1;Q13748;B4DQK4;Q9UQM3;Q13748-2;Q6PEY2;C9J2C0;Q9NY65-2;Q9NY65;Q7Z3M3;V9GZ17 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E;TUBA8;DKFZp686L04275 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 2 1 1 66.039 66.126 2;3 1.0393E-11 28788 20181213_JW_Orientia_Karp_1_3 225.72 173.03 52246000 26249000 11700000 14297000 0 0 0 0 0 850 512;1887 744 5328;5329;5330;5331 3462;3463;3464;3465;3466 3466 5 AVDEAADALLK Unmodified 1114.587 0.58700389 592 B4DS66;B4DKR1;Q16891-2;Q16891;H7C463;C9J406;B9A067;B4DQY2;Q16891-3;Q16891-4;B4DT20;Q05DN3;B4E2B5 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 49.186 49.487 2 0.012583 18245 20181213_JW_Orientia_Karp_1_3 91.584 28.05 54042000 18972000 13493000 9727600 3862100 2164800 3454100 0 2369300 851 592 745 5332;5333;5334;5335;5336;5337;5338 3467 3467 1 AVDEIRPIICEAGLFNTVHGSALFTR Unmodified 2885.4858 0.48579707 1127 Karp_00330 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 67.33 67.483 4 0.018977 30292 20181213_JW_Orientia_Karp_1_1 48.331 29.599 138790000 80319000 0 0 0 19472000 21221000 0 17784000 852 1127 746 5339;5340;5341;5342 3468;3469;3470;3471 3468 4 AVDLGPPKPSDQETGEQVSSPSSHPALHTTTEDSAGVQTEF Unmodified 4232.9622 0.96218369 158 A0A024R872;Q96TA1-2;Q96TA1;Q2YD88;Q9H8K1;Q9H6L6 C9orf88;FAM129B Niban-like protein 1 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.697 51.013 4 0.031425 19500 20181213_JW_Orientia_Karp_1_3 30.944 15.165 87707000 10420000 23679000 25443000 7210900 5463200 0 15493000 0 853 158 747 5343;5344;5345;5346;5347;5348 3472 3472 1 AVDMLSTFSVIELLELTK Oxidation (M) 2024.0751 0.075145363 1171 Karp_00625 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 77.241 77.238 2;3 5.6421E-101 36489 20181213_JW_Orientia_Karp_1_2 304.08 219.26 1968200000 574690000 204220000 291620000 152640000 206860000 135340000 394600000 8274300 854 1171 748 5349;5350;5351;5352;5353;5354;5355;5356;5357;5358;5359;5360;5361;5362;5363 3473;3474;3475;3476;3477;3478;3479;3480;3481;3482 3474 723 10 AVDMLSTFSVIELLELTK Unmodified 2008.0802 0.080230741 1171 Karp_00625 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 78.737 78.719 2 3.2836E-54 32429 20181213_JW_Orientia_Karp_2_1 264.58 175.31 106160000 50246000 21002000 10501000 4734000 6718400 0 12956000 0 855 1171 748 5364;5365;5366;5367;5368;5369 3483;3484;3485;3486;3487;3488 3486 6 AVDSLVPIGR Unmodified 1025.5869 0.58694431 1628 V9HW26;P25705-2;P25705;P25705-3;K7EK77;B4DGW3;K7ENJ4;K7ERX7 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 52.484 52.744 2 0.00024027 19209 20181213_JW_Orientia_Karp_2_3 143.73 76.565 258160000 86956000 86416000 0 34667000 17262000 32855000 0 0 856 1628 749 5370;5371;5372;5373;5374 3489;3490;3491 3491 3 AVDSQILPK Unmodified 969.5495 0.54949617 226 Q8TBK5;Q8N5Z7;B2R4K7;A0A024RBK3;Q9HBB3;Q02878;B4DRX3 RPL6 60S ribosomal protein L6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 40.954 41.254 2 0.00081965 12950 20181213_JW_Orientia_Karp_3_1 134.77 45.47 108850000 35146000 35623000 23577000 0 0 0 14506000 0 857 226 750 5375;5376;5377;5378;5379;5380 3492;3493;3494;3495;3496;3497 3496 6 AVEAVIADVR Unmodified 1041.5819 0.58185893 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 5 3 1 1 3 47.206 47.52 2 6.4688E-07 15557 20181213_JW_Orientia_Karp_3_1 190.02 109.58 21229000000 6334500000 5051200000 4938400000 1511600000 1012200000 1505000000 58516000 817560000 858 1296 751 5381;5382;5383;5384;5385;5386;5387;5388;5389;5390;5391;5392;5393;5394;5395;5396;5397;5398;5399;5400;5401 3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508;3509;3510;3511;3512;3513;3514;3515;3516;3517;3518;3519 3517 22 AVEAVIADVRK Unmodified 1169.6768 0.67682195 1296 Karp_01187 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 1 2 2 2 37.501 37.847 2;3 0.023774 11616 20181213_JW_Orientia_Karp_1_3 104.42 46.874 99029000 18448000 21037000 13127000 4131900 32325000 0 9959100 0 859 1296 752 5402;5403;5404;5405;5406;5407;5408;5409;5410;5411;5412 3520;3521 3520 2 AVEHLDDLPGALSELSDLHAHK Unmodified 2366.1866 0.18663816 789 CON__P01966 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 1 2 55.998 56.395 3;4;5 1.2285E-06 19652 20181213_JW_Orientia_Karp_3_2 157.88 97.119 271570000 0 49346000 5182100 13736000 66061000 127840000 4992600 4404100 + 860 789 753 5413;5414;5415;5416;5417;5418;5419;5420;5421;5422 3522;3523;3524;3525 3525 4 AVELLGDIVQNCSLEDSQIEK Unmodified 2359.1577 0.15770579 1649 P31930;B4DUL5;B4DZB9 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 68.18 68.406 3 2.8331E-08 24247 20181213_JW_Orientia_Karp_3_1 157.88 124.48 40970000 10399000 5004700 6699900 0 4173600 0 11436000 3257000 861 1649 754 5423;5424;5425;5426;5427;5428 3526;3527;3528;3529;3530 3529 5 AVENFNLAIK Unmodified 1117.6132 0.61315906 1264 Karp_01053 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.437 51.737 2 0.0098671 18645 20181213_JW_Orientia_Karp_2_3 93.598 40.812 76326000 0 19219000 16583000 16377000 8254500 15892000 0 0 862 1264 755 5429;5430;5431;5432;5433 3531;3532;3533;3534 3533 4 AVENYLIQMAR Unmodified 1306.6704 0.67035637 1492 O14737;K7EQA1;O14737-2;Q59GR9 PDCD5 Programmed cell death protein 5 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.626 56.902 2 2.8143E-06 21262 20181213_JW_Orientia_Karp_2_2 178.84 119.86 45203000 11559000 6823200 8888000 0 9450400 8384600 0 97840 863 1492 756 5434;5435;5436;5437;5438;5439 3535;3536;3537;3538;3539 3537 5 AVENYLIQMAR Oxidation (M) 1322.6653 0.66527099 1492 O14737;K7EQA1;O14737-2;Q59GR9 PDCD5 Programmed cell death protein 5 yes no 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 47.283 47.685 2 0.0081302 16120 20181213_JW_Orientia_Karp_3_1 96.342 51.589 37372000 0 0 4521600 8230700 7783900 10304000 1141300 5389900 864 1492 756 5440;5441;5442;5443;5444;5445 3540;3541 3541 1100 1 AVEVQGPSLESGDHGK Unmodified 1608.7744 0.77436375 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 34.42 34.858 2 0.028251 10271 20181213_JW_Orientia_Karp_1_2 77.912 20.076 5376000 0 922790 3798200 374370 0 0 280640 0 865 1782 757 5446;5447;5448;5449 3542 3542 1 AVEYLLMGIPGDR Unmodified 1432.7384 0.73843593 557 B7ZA74;B7Z4W4;B4DEA3;P54727-2;P54727 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 67.608 67.81 2 0.0096807 29906 20181213_JW_Orientia_Karp_1_3 99.568 45.029 18272000 4732200 0 6360700 0 0 2699800 1906000 2573200 866 557 758 5450;5451;5452;5453;5454 3543;3544 3544 2 AVEYLLMGIPGDR Oxidation (M) 1448.7334 0.73335055 557 B7ZA74;B7Z4W4;B4DEA3;P54727-2;P54727 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 61.158 61.435 2 0.00027712 23638 20181213_JW_Orientia_Karp_2_2 158.05 109.07 53873000 12754000 0 9463100 4722900 15275000 8511100 0 3148100 867 557 758 5455;5456;5457;5458;5459;5460 3545;3546;3547 3546 349 3 AVFDETYPDPVR Unmodified 1407.667 0.66704513 628 P49588;B4DR45;H3BPK7 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 54.029 54.371 2 0.00087673 22015 20181213_JW_Orientia_Karp_1_1 137.46 72.619 87787000 36371000 23080000 21709000 5410700 0 0 0 1215700 868 628 759 5461;5462;5463;5464;5465 3548;3549;3550 3548 3 AVFPSIVGR Unmodified 944.54435 0.54435122 1717;1743;351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;P63267-2;F8WCH0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;G5E9R0;E7EVS6;C9JZR7;C9JUM1;C9JTX5;Q6S8J3;A5A3E0;P0CG38;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;POTEE;POTEF;POTEI;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 53.601 53.958 2 0.00065133 21182 20181213_JW_Orientia_Karp_1_3 153.04 109.39 6972900000 4712100000 686710000 545760000 282870000 251950000 491900000 1009800 575770 869 351;1717;1743 760 5466;5467;5468;5469;5470;5471;5472;5473 3551;3552;3553;3554 3551 4 AVFPSIVGRPR Unmodified 1197.6982 0.6982261 1717;1743;351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;P63267-2;F8WCH0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;G5E9R0;E7EVS6;C9JZR7;C9JUM1;C9JTX5;Q6S8J3;A5A3E0;P0CG38;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;POTEE;POTEF;POTEI;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 44.328 44.654 2 0.005988 13931 20181213_JW_Orientia_Karp_3_2 152.06 100.73 1227100000 272400000 494080000 147780000 0 0 97851000 182030000 32967000 870 351;1717;1743 761 5474;5475;5476;5477;5478;5479 3555;3556;3557 3557 2 AVFQANQENLPILK Unmodified 1583.8671 0.86714192 719 B7Z3V1;P05023-3;P05023-4;P05023;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 58.73 59.023 2 0.0019748 24387 20181213_JW_Orientia_Karp_1_3 125.97 54.886 43952000 10618000 8067600 15615000 2630800 2593700 3496900 930990 0 871 719 762 5480;5481;5482;5483;5484;5485;5486 3558;3559;3560;3561;3562;3563 3560 6 AVFVDLEPTVIDEVR Unmodified 1700.8985 0.89850163 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;F8VVB9;B4DN58;F8VRZ4;F8VS66;F8VWV9;F8VX09;F8VRK0;Q71U36-2;Q71U36;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;F8VQQ4 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 71.37 71.465 2 1.567E-62 28575 20181213_JW_Orientia_Karp_3_2 280.38 181.37 3997200000 1049200000 1174500000 635430000 145880000 166140000 138740000 547310000 140050000 872 512;1887 763 5487;5488;5489;5490;5491;5492;5493;5494 3564;3565;3566;3567;3568;3569;3570;3571;3572 3572 9 AVGAYSK Unmodified 694.36499 0.36498987 801 CON__P15636 yes yes 0 0 0 0 By matching By MS/MS 1 1 11.317 12.099 1 0.026988 1861 20181213_JW_Orientia_Karp_3_2 105.2 47.737 1285700000 0 0 0 0 251670000 0 0 1034000000 + 873 801 764 5495;5496 3573 3573 0 AVGEAEAILLVAK Unmodified 1282.7497 0.74965254 1104 Karp_00281 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 60.354 60.674 2 3.8953E-17 23195 20181213_JW_Orientia_Karp_2_2 215.72 157.86 753080000 181780000 143870000 249310000 19187000 56355000 79837000 7889600 14853000 874 1104 765 5497;5498;5499;5500;5501;5502;5503;5504 3574;3575;3576;3577;3578;3579;3580;3581;3582;3583 3580 10 AVGWNELEGR Unmodified 1129.5516 0.55162144 1722 Q6LEE2;Q6FGB3;P61457 PCBD;PCBD1 Pterin-4-alpha-carbinolamine dehydratase yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 46.874 47.214 2 0.02522 15904 20181213_JW_Orientia_Karp_2_2 80.916 46.114 22765000 0 0 0 6172300 5775600 5936600 0 4880700 875 1722 766 5505;5506;5507;5508 3584;3585 3585 2 AVINHIK Unmodified 793.48102 0.48102268 1150 Karp_00511 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 17.652 18.055 2 0.017124 4237 20181213_JW_Orientia_Karp_1_1 107.55 9.9119 23623000 10085000 0 9712500 0 0 0 0 3826300 876 1150 767 5509;5510;5511 3586;3587;3588 3586 3 AVITVPAYFNDAQR Unmodified 1563.8045 0.80454166 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 1 1 59.517 59.792 2 0.00018313 25215 20181213_JW_Orientia_Karp_1_2 179.94 60.255 3675700000 1008900000 7857400 807160000 342490000 319320000 400500000 789400000 0 877 1074 768 5512;5513;5514;5515;5516;5517;5518;5519;5520;5521;5522;5523 3589;3590;3591;3592;3593;3594;3595;3596;3597;3598 3591 10 AVITVPAYFNDAQR Deamidation (NQ) 1564.7886 0.78855725 1074 Karp_00050 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1 1 1 2 62.423 62.729 2 0.00049301 26811 20181213_JW_Orientia_Karp_1_3 152.96 86.902 1953200000 666910000 445930000 466860000 49714000 152840000 90711000 337260 79867000 878 1074 768 5524;5525;5526;5527;5528;5529;5530;5531;5532;5533;5534;5535 3599;3600;3601;3602;3603;3604 3600 412 6 AVIVLVENFYK Deamidation (NQ) 1294.7173 0.71728978 1937 Q96FQ6 S100A16 Protein S100-A16 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 67.911 68.164 2 0.018166 26979 20181213_JW_Orientia_Karp_2_2 99.653 64.429 10079000 5932100 338300 0 0 0 0 2251900 1556600 879 1937 769 5536;5537;5538;5539;5540 3605;3606 3605 1205 2 AVIYNNLQNK Unmodified 1175.6299 0.62987176 1179 Karp_00654 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 36.224 36.508 2 3.1499E-06 10618 20181213_JW_Orientia_Karp_2_3 176.66 111.2 70997000 17360000 13786000 17916000 0 15374000 2078400 4482000 0 880 1179 770 5541;5542;5543;5544;5545;5546 3607;3608;3609;3610;3611 3611 5 AVIYNNLQNK Deamidation (NQ) 1176.6139 0.61388734 1179 Karp_00654 yes yes 0 1 0 0 By MS/MS 1 40.413 40.413 2 0.0099097 13590 20181213_JW_Orientia_Karp_1_1 116.9 72.787 0 0 0 0 0 0 0 0 0 881 1179 770 5547 3612 3612 593 1 AVIYNPATQADWTAK Unmodified 1647.8257 0.82567103 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;E7ERA5;G1UI33;Q9UE82 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 53.539 53.939 2 1.434E-08 19015 20181213_JW_Orientia_Karp_3_1 205.02 136.8 99056000 0 33335000 62768000 0 0 0 2954000 0 882 944 771 5548;5549;5550 3613;3614;3615;3616 3616 4 AVLCPPPVK Unmodified 979.55247 0.55247306 302 A4D2P2;A4D2P1;A4D2P0;P63000;P63000-2;A0A024R9T5;P60763 RAC1;hCG_20693;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 41.275 41.599 2 0.020854 13626 20181213_JW_Orientia_Karp_1_3 83.614 29.089 26927000 9048500 0 11226000 558940 0 0 6093200 0 883 302 772 5551;5552;5553;5554 3617 3617 1 AVLDILNEHPGLVNFQQDGDFK Unmodified 2468.2336 0.23358835 1350 Karp_01526 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 69.842 69.959 3 4.3241E-09 25082 20181213_JW_Orientia_Karp_3_1 158.15 134.5 484270000 78123000 103590000 58590000 0 77081000 26790000 140090000 0 884 1350 773 5555;5556;5557;5558;5559;5560 3618;3619;3620;3621;3622;3623;3624;3625;3626 3626 9 AVLDILNEHPGLVNFQQDGDFK Deamidation (NQ) 2469.2176 0.21760393 1350 Karp_01526 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 71.579 71.654 3 0.016436 29175 20181213_JW_Orientia_Karp_2_1 74.657 44.505 49805000 10307000 10119000 0 5443900 6040700 5755000 12139000 0 885 1350 773 5561;5562;5563;5564;5565;5566 3627 3627 803 1 AVLFCLSEDK Unmodified 1180.5798 0.57981002 1625 V9HWI5;P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;B4E112;E9PLJ3;E9PS23 HEL-S-15;CFL1 Cofilin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 55.117 55.462 2 0.00074603 20527 20181213_JW_Orientia_Karp_2_1 129.42 87.973 111350000 21004000 17071000 13524000 15413000 22183000 21577000 0 582470 886 1625 774 5567;5568;5569;5570;5571;5572;5573;5574 3628;3629;3630;3631;3632;3633;3634;3635 3631 8 AVLHHGADVNAR Unmodified 1258.6531 0.65306682 1350;1185 Karp_00684;Karp_01526 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 18.976 19.21 3 0.0080125 3634 20181213_JW_Orientia_Karp_1_1 116.84 74.501 176330000 30446000 56527000 24001000 7457500 0 52855000 5045900 0 887 1185;1350 775 5575;5576;5577;5578;5579;5580 3636;3637;3638;3639 3636 4 AVLHVHGGGGPR Unmodified 1155.6261 0.62612379 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 16.508 16.927 3 0.014681 3361 20181213_JW_Orientia_Karp_2_1 82.831 45.486 35767000 26787000 0 0 2846600 1015600 2656000 2251600 210790 888 195 776 5581;5582;5583;5584;5585;5586 3640;3641;3642 3640 3 AVLLGPPGAGK Unmodified 978.58622 0.58621603 943 F8W1A4;P54819-3;P54819-5;P54819-2;P54819;F8VY04;B4DLK2;G3V213;F8VZG5;F8VPP1 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.494 44.787 2 0.017346 15412 20181213_JW_Orientia_Karp_1_3 86.833 26.045 95669000 36916000 33437000 19374000 2902600 0 2673100 0 367350 889 943 777 5587;5588;5589;5590;5591;5592 3643 3643 1 AVLVDLEPGTMDSVR Oxidation (M) 1616.808 0.80797206 1747;1550;1823 P04350;B4DJ43;B4DE77;M0R278;M0QY85;M0QZL7;M0R0X0;M0QY37;M0QX14;A0A075B724;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;B4DNW1;Q3ZCM7 TUBB4A;TUBB8;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-8 chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 55.997 56.355 2 5.4518E-21 21075 20181213_JW_Orientia_Karp_2_1 225.55 175.52 579370000 130180000 90317000 214750000 37730000 43696000 38363000 17460000 6871500 890 1550;1747;1823 778 5593;5594;5595;5596;5597;5598;5599;5600 3644;3645;3646;3647;3648;3649;3650 3648 1153 7 AVLVDLEPGTMDSVR Unmodified 1600.8131 0.81305744 1747;1550;1823 P04350;B4DJ43;B4DE77;M0R278;M0QY85;M0QZL7;M0R0X0;M0QY37;M0QX14;A0A075B724;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;B4DNW1;Q3ZCM7 TUBB4A;TUBB8;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-8 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 61.873 62.048 2 1.4348E-19 26956 20181213_JW_Orientia_Karp_1_1 219.92 164.45 204370000 132340000 72033000 0 0 0 0 0 0 891 1550;1747;1823 778 5601;5602;5603 3651;3652;3653 3651 3 AVMDHVSDSFLETNVPLLVLIEAAK Unmodified 2710.4252 0.42515387 684 G3XAM7;B4E2G8;P35221;P35221-2;B4DKT9;B4DU00;P35221-3;B3KSR8;E5RJP7;E5RGD2;E5RGG4;E5RJ43;E5RGS1;E5RGU3;E5RHJ5;E5RFG3;E5RFK9;E5RFM5 CTNNA1 Catenin alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 76.337 76.349 3 0.019431 35554 20181213_JW_Orientia_Karp_1_3 48.489 14.824 29580000 0 11538000 12232000 2084200 0 0 3725700 0 892 684 779 5604;5605;5606;5607 3654;3655 3655 2 AVMLAQGSILTNK Unmodified 1344.7435 0.74352131 1140 Karp_00452 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.793 52.138 2 3.0076E-17 20637 20181213_JW_Orientia_Karp_1_1 256.48 158.84 179340000 57803000 30307000 52949000 13002000 9258400 12667000 2173600 1178800 893 1140 780 5608;5609;5610;5611;5612;5613;5614;5615 3656;3657;3658;3659;3660;3661;3662;3663 3656 8 AVNLSELIDPEEDNTR Unmodified 1813.8694 0.86938634 1338 Karp_01468 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 65.478 65.711 2 1.397E-27 22848 20181213_JW_Orientia_Karp_3_1 226.23 152.34 149050000 24722000 33280000 18963000 4529300 28540000 15313000 21574000 2124800 894 1338 781 5616;5617;5618;5619;5620;5621;5622;5623 3664;3665;3666;3667;3668;3669;3670 3670 7 AVNRLLQELRAK 2 Deamidation (NQ) 1411.8147 0.81471242 271 E9PDN5;A0A075B6G3;P11532-3;P11532-2;P11532-4;P11532;Q8WYC5;H0Y304;Q59HC3 DMD Dystrophin yes no 0 2 0 2 By MS/MS 1 39.133 39.384 3 0.0022237 12179 20181213_JW_Orientia_Karp_2_3 122.69 49.457 0 0 0 0 0 0 0 0 0 895 271 782 5624 3671 3671 100;1354 1 AVNVYSTSVTSDNLSR Acetyl (Protein N-term) 1753.8483 0.84825697 290 A2VCR0;B4DM33;Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes no 1 0 0 0 By matching By MS/MS By MS/MS 1 1 1 62.676 62.859 2 0.00036652 27124 20181213_JW_Orientia_Karp_1_2 138.31 87.823 28223000 10671000 11363000 6188800 0 0 0 0 0 896 290 783 5625;5626;5627 3672;3673 3672 2 AVNYFSK Unmodified 827.41775 0.41775372 1757 Q00610-2;Q00610;J3KS13 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 33.781 34.081 2 0.042012 9874 20181213_JW_Orientia_Karp_1_2 82.241 36.225 88068000 15800000 15136000 56156000 0 0 0 976080 0 897 1757 784 5628;5629;5630;5631 3674 3674 1 AVQLHPVTEFINHIDFILVEQNGGIQK 2 Deamidation (NQ) 3060.592 0.59203628 1100 Karp_00268 yes yes 0 2 0 0 By MS/MS By matching By matching 2 1 1 71.544 71.618 4 0.00042164 32630 20181213_JW_Orientia_Karp_1_1 83.606 53.358 119910000 102680000 13903000 0 3325200 0 0 0 0 898 1100 785 5632;5633;5634;5635 3675;3676 3675 454;1800;1801 1 AVQLHPVTEFINHIDFILVEQNGGIQK Deamidation (NQ) 3059.608 0.60802069 1100 Karp_00268 yes yes 0 1 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 1 72.519 72.574 3;4 1.9684E-07 33414 20181213_JW_Orientia_Karp_1_2 124.1 103.62 398940000 16227000 83905000 10313000 0 74003000 71180000 131390000 11922000 899 1100 785 5636;5637;5638;5639;5640;5641;5642;5643;5644;5645;5646 3677;3678;3679;3680;3681;3682;3683 3677 454;1800;1801 7 AVSDALQQPR Unmodified 1083.5673 0.5672715 1109 Karp_00291 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.316 34.632 2 0.00025032 10616 20181213_JW_Orientia_Karp_1_1 143.37 81.266 74272000 30526000 23649000 10814000 2686100 1725800 2606000 0 2264900 900 1109 786 5647;5648;5649;5650;5651;5652;5653;5654 3684;3685;3686;3687;3688;3689;3690 3684 6 AVSDWIDEQEK Unmodified 1318.6041 0.60411052 147;922 A0A024R7C7;Q12906;F4ZW64;A8K590;Q12906-5;Q12906-2;Q12906-3;B4DFG4;F4ZW65;Q59GP7;K7EKJ9;K7EQ75;K7ERM6;K7ENK6;K7EM82;K7EJ09;K7ER69;F4ZW66;Q12906-7;Q12906-4;Q12906-6 ILF3 Interleukin enhancer-binding factor 3 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 48.885 49.187 2 0.00057037 18177 20181213_JW_Orientia_Karp_1_2 138.25 85.969 160320000 27525000 48950000 31411000 23877000 12588000 8192300 0 7775400 901 147;922 787 5655;5656;5657;5658;5659;5660;5661 3691;3692;3693;3694 3692 4 AVSSAIAQLLGEVAQGNENYAGIAAR Unmodified 2572.3245 0.32452862 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 74.316 74.341 3 0.00025868 34518 20181213_JW_Orientia_Karp_1_1 95.052 68.528 59439000 24450000 0 29569000 0 1932200 0 3488300 0 902 2016 788 5662;5663;5664;5665 3695;3696 3695 2 AVSVTPIR Acetyl (Protein N-term) 883.51272 0.51271674 776 C9JP00;Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56 MBNL1 Muscleblind-like protein 1 yes no 1 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 56.855 57.171 1 0.015061 23809 20181213_JW_Orientia_Karp_1_1 90.777 35.272 61587000 16999000 14283000 11599000 7423400 6162400 3711000 0 1409300 903 776 789 5666;5667;5668;5669;5670;5671;5672 3697;3698 3697 0 AVSVTPIRDTK Acetyl (Protein N-term) 1227.6823 0.68230126 776 C9JP00;Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56 MBNL1 Muscleblind-like protein 1 yes no 1 0 0 1 By MS/MS By MS/MS 1 1 44.721 45.372 2 1.5263E-05 14982 20181213_JW_Orientia_Karp_3_1 175.93 109.64 1523000 0 0 0 0 0 0 1523000 0 904 776 790 5673;5674 3699;3700 3700 2 AVTELNEPLSNEDR Unmodified 1585.7584 0.75837933 45 A0A024R1K7;Q04917 YWHAH 14-3-3 protein eta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 44.299 44.576 2 5.7608E-26 15260 20181213_JW_Orientia_Karp_1_3 239.48 182.33 42963000 15582000 13130000 11448000 1003600 490830 0 0 1309100 905 45 791 5675;5676;5677;5678;5679;5680 3701;3702;3703;3704 3703 4 AVTEQGAELSNEER Unmodified 1531.7114 0.71142914 1635 P27348;E9PG15;Q53RR5 YWHAQ 14-3-3 protein theta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 32.807 33.107 2 1.1667E-34 9388 20181213_JW_Orientia_Karp_1_3 246.63 180.33 25126000 7847200 6385200 8430300 0 0 0 2463200 0 906 1635 792 5681;5682;5683;5684 3705;3706;3707 3707 3 AVTEQGHELSNEER Unmodified 1597.7332 0.73322721 1650 V9HWD6;P31946-2;P31946;B5BU24;Q4VY20;Q4VY19;Q59EQ2 HEL-S-1;YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 24.074 24.404 3 0.0069702 5806 20181213_JW_Orientia_Karp_1_1 96.135 61.957 35019000 3562100 7619600 2728100 2973000 0 2361600 7351300 8423600 907 1650 793 5685;5686;5687;5688;5689;5690;5691 3708;3709;3710;3711;3712;3713 3708 6 AVTEVLAR Unmodified 857.49707 0.49706667 1861 Q9UQD4;Q6FGM0;Q99961;M0QYE0;M0R0I3;Q99961-3;Q99961-2;M0R2K6 SH3GL1 Endophilin-A2 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 36.525 36.925 2 0.018329 10224 20181213_JW_Orientia_Karp_2_2 90.37 16.115 31740000 0 15863000 9100500 1455300 2917500 0 2403800 0 908 1861 794 5692;5693;5694;5695;5696 3714;3715 3715 2 AVTGYNDPETGNIISLFQAMNK Oxidation (M) 2398.1475 0.14747546 1601 Q4LE79;P15924-2;P15924-3;P15924 DSP variant protein;DSP Desmoplakin yes no 0 0 1 0 By matching By MS/MS 1 1 70.353 70.503 3 0.026834 28191 20181213_JW_Orientia_Karp_2_2 69.747 43.404 6621200 0 0 0 1645600 4975700 0 0 0 909 1601 795 5697;5698 3716 3716 1227 0 AVTVGFILR Unmodified 974.5913 0.59130141 1123 Karp_00323 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 58.337 58.597 2 0.00022891 24161 20181213_JW_Orientia_Karp_1_3 180.93 116.12 54267000 20571000 7870500 8331300 0 3759300 12157000 0 1578200 910 1123 796 5699;5700;5701;5702;5703;5704 3717;3718;3719;3720;3721 3719 5 AVVGVVAGGGR Unmodified 940.54541 0.54541385 899 E9PKZ0;P62917;E9PP36;E9PKU4 RPL8 60S ribosomal protein L8 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.244 35.616 2 8.5588E-05 11193 20181213_JW_Orientia_Karp_1_1 161.68 107.48 126350000 42209000 26458000 31942000 4030200 5377300 0 12700000 3636300 911 899 797 5705;5706;5707;5708;5709;5710;5711;5712 3722;3723;3724;3725;3726;3727;3728 3722 7 AVYDEQGTVDEDSPVLTQDRDWEAYWR Unmodified 3242.4429 0.44286544 18 A0A024QZN2;Q8WXX5 hCG_2024613;DNAJC9 DnaJ homolog subfamily C member 9 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 65.821 66.021 3 0.0011653 29331 20181213_JW_Orientia_Karp_1_1 80.702 66.617 19470000 10355000 3167700 4180900 0 0 0 1767100 0 912 18 798 5713;5714;5715;5716 3729;3730 3729 2 AVYLTAHYNQEGK Unmodified 1492.731 0.73104237 1266 Karp_01074 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 33.003 33.304 2 0.022841 8978 20181213_JW_Orientia_Karp_2_3 84.289 51.065 21328000 16587000 0 0 0 0 1364300 3376200 0 913 1266 799 5717;5718;5719 3731 3731 1 AVYTQDCPLAAAK Unmodified 1406.6864 0.68640036 628 P49588;B4DR45;H3BPK7 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 42.138 42.48 2 0.00040803 14068 20181213_JW_Orientia_Karp_1_3 156.01 120.47 56754000 14238000 14867000 15742000 0 0 0 10414000 1492800 914 628 800 5720;5721;5722;5723;5724 3732;3733;3734;3735;3736 3734 5 AWDDFFPGSDR Unmodified 1311.552 0.55201537 76 F8WF90;C9JQU6;F8WF33;B4DWQ6;B4DZZ0;B3KQB4;A0A024R371;O75915 ARL6IP5 PRA1 family protein 3 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 65.746 65.862 2 0.0047919 29282 20181213_JW_Orientia_Karp_1_1 106.2 58.108 20335000 10343000 4543200 5449300 0 0 0 0 0 915 76 801 5725;5726;5727 3737 3737 1 AWGPGLEGGVVGK Unmodified 1225.6455 0.64552182 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.144 51.445 2 0.0011043 20102 20181213_JW_Orientia_Karp_1_1 140.17 88.22 374800000 114190000 53239000 151970000 22805000 12885000 18994000 0 725030 916 1615 802 5728;5729;5730;5731;5732;5733;5734 3738;3739;3740;3741;3742;3743;3744 3738 7 AWGPGLHGGIVGR Unmodified 1275.6836 0.68363867 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 42.9 43.2 3 0.034977 14453 20181213_JW_Orientia_Karp_1_3 65.241 28.288 166550000 110020000 38649000 10429000 1115500 346260 0 5984200 0 917 1520 803 5735;5736;5737;5738;5739;5740 3745 3745 1 AWHTQQK Unmodified 897.4457 0.4456998 1134 Karp_00400 yes yes 0 0 0 0 By MS/MS 1 8.0488 7.6978 2 0.033557 1527 20181213_JW_Orientia_Karp_3_1 94.262 29.459 0 0 0 0 0 0 0 0 0 918 1134 804 5741 3746 3746 1 AWLSSQAAELER Unmodified 1359.6783 0.67827852 839 D3DVC4;Q05BW3;A5PKT9 NES yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 50.425 50.742 2 0.0033795 17149 20181213_JW_Orientia_Karp_3_1 130.56 79.276 60439000 28957000 6561000 10251000 6097300 3140200 0 5433300 0 919 839 805 5742;5743;5744;5745;5746;5747 3747 3747 1 AWPFIEAQK Unmodified 1088.5655 0.56548059 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 56.948 57.343 2 0.01833 21470 20181213_JW_Orientia_Karp_2_2 85.161 50.009 143290000 0 57776000 26397000 7211700 12704000 26039000 578810 12581000 920 1118 806 5748;5749;5750;5751;5752;5753;5754 3748;3749;3750;3751 3750 4 AWTVEQLR Unmodified 1001.5294 0.52942943 1758 Q53GD8;Q00688;G3V5F2 FKBP3 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 46.867 47.14 2 0.0012264 15918 20181213_JW_Orientia_Karp_2_1 178.99 83.638 119590000 32427000 21576000 18532000 19268000 9741900 15863000 0 2185200 921 1758 807 5755;5756;5757;5758;5759;5760;5761 3752;3753;3754;3755;3756 3754 5 AYAALAALEK Unmodified 1019.5651 0.56514624 147;922 A0A024R7C7;Q12906;F4ZW64;A8K590;Q12906-5;Q12906-2;Q12906-3;B4DFG4;F4ZW65;B4DDF3;F4ZW66;Q12906-7;Q12906-4;Q12906-6 ILF3 Interleukin enhancer-binding factor 3 no no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.96 49.27 2 0.00038906 18064 20181213_JW_Orientia_Karp_1_3 138.4 94.047 60686000 15250000 20614000 15671000 4782200 2306600 0 0 2062400 922 147;922 808 5762;5763;5764;5765;5766;5767 3757;3758;3759;3760;3761 3757 5 AYCAAFNFR Unmodified 1118.4967 0.4967491 1315 Karp_01271 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 48.499 48.801 2 0.0026428 16816 20181213_JW_Orientia_Karp_2_1 115.46 79.034 38656000 7487400 12746000 5920300 5619600 3095400 1192700 0 2594900 923 1315 809 5768;5769;5770;5771;5772;5773;5774 3762;3763 3763 2 AYDIYSR Unmodified 886.41848 0.418482 1352 Karp_01574 no no 0 0 0 0 By MS/MS By matching By matching 1 1 1 36.279 36.479 2 0.030159 11559 20181213_JW_Orientia_Karp_1_1 89.296 6.6244 112030000 73919000 33320000 0 0 0 4795200 0 0 924 1352 810 5775;5776;5777 3764 3764 1 AYEALDQFNWSEDELITYEQELK Unmodified 2833.297 0.29703605 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 74.264 74.28 3 1.8718E-07 34482 20181213_JW_Orientia_Karp_1_2 139.95 112.02 63444000 15313000 15106000 18530000 0 4443800 3872900 6177600 0 925 1068;1081;1083;1086;1151;1356 811 5778;5779;5780;5781;5782;5783 3765;3766;3767;3768;3769;3770 3766 6 AYEFGGTVDGYTLR Unmodified 1547.7256 0.72562264 1332 Karp_01370 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.508 56.792 2 0.00015021 23711 20181213_JW_Orientia_Karp_1_1 181.31 100.86 96885000 28970000 22840000 27882000 0 9348300 4693100 3152000 0 926 1332 812 5784;5785;5786;5787;5788;5789;5790 3771;3772;3773;3774;3775;3776 3771 6 AYFHLLNQIAPK Unmodified 1413.7769 0.77687035 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;H7C4N2;Q14651;C9JAM8 PLS3;PLS1 Plastin-3;Plastin-1 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.066 52.336 3 0.0037652 18966 20181213_JW_Orientia_Karp_2_3 134.84 97.832 144230000 80904000 16982000 19183000 11291000 0 15869000 0 0 927 623 813 5791;5792;5793;5794;5795 3777 3777 1 AYFNNILQPINEGVVLAR Unmodified 2030.0949 0.094910023 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 1 72.254 72.332 2;3 1.3537E-23 29207 20181213_JW_Orientia_Karp_3_2 219.97 152.04 1894400000 495550000 302170000 367310000 80484000 152010000 110140000 318550000 68198000 928 1349 814 5796;5797;5798;5799;5800;5801;5802;5803;5804;5805;5806;5807;5808 3778;3779;3780;3781;3782;3783;3784;3785;3786;3787 3787 9 AYFNNILQPINEGVVLAR Deamidation (NQ) 2031.0789 0.078925608 1349 Karp_01525 yes yes 0 1 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 2 2 2 73.117 73.152 2 1.6575E-19 33557 20181213_JW_Orientia_Karp_1_3 199.13 139.56 547200000 87135000 107280000 133340000 31856000 3709800 36373000 101550000 45960000 929 1349 814 5809;5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821 3788;3789;3790;3791 3789 799;800;801 3 AYFNNILQPINEGVVLAR 2 Deamidation (NQ) 2032.0629 0.062941193 1349 Karp_01525 yes yes 0 2 0 0 By matching By MS/MS 1 1 74.025 74.024 2 0.0037231 34059 20181213_JW_Orientia_Karp_1_3 109.44 57.601 17550000 11354000 0 6196000 0 0 0 0 0 930 1349 814 5822;5823 3792 3792 799;800;801 1 AYGPGIEPTGNMVK Oxidation (M) 1448.697 0.69696505 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.752 39.934 2 0.011132 13387 20181213_JW_Orientia_Karp_1_1 92.866 39.299 36050000 9546200 15959000 10545000 0 0 0 0 0 931 1615 815 5824;5825;5826 3793;3794;3795 3793 1237 3 AYGPGLEK Unmodified 833.42832 0.42831841 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 30.552 30.954 2 0.020869 8826 20181213_JW_Orientia_Karp_1_1 87.754 39.839 65526000 24823000 23158000 8826500 1229900 1602300 0 4608200 1278100 932 1520 816 5827;5828;5829;5830;5831;5832;5833 3796 3796 1 AYGQALAK Unmodified 820.4443 0.44430282 527 B3KSI4;V9HWD9;Q53EM5;P29401;P29401-2;B4DVU1;B4E022;B3KPZ8 HEL107;TKT Transketolase yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 25.738 26.132 2 0.037148 6264 20181213_JW_Orientia_Karp_1_2 78.616 31.57 18562000 0 7369800 1747800 3087700 1740800 2178300 873150 1564200 933 527 817 5834;5835;5836;5837;5838;5839;5840 3797 3797 1 AYHEQLSVAEITNACFEPANQMVK Oxidation (M) 2765.2789 0.27890034 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;C9JDS9;Q71U36-2;Q71U36;Q1ZYQ1;Q13748;B4DQK4;Q9UQM3;Q13748-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 54.76 55.042 3 1.5923E-07 22127 20181213_JW_Orientia_Karp_1_2 142.79 108.64 245510000 96696000 37005000 92540000 0 0 18752000 0 518430 934 512;1887 818 5841;5842;5843;5844;5845 3798;3799;3800;3801 3799 330 4 AYHEQLSVAEITNACFEPANQMVK Unmodified 2749.284 0.28398571 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;C9JDS9;Q71U36-2;Q71U36;Q1ZYQ1;Q13748;B4DQK4;Q9UQM3;Q13748-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 58.591 58.9 3 3.4301E-10 25005 20181213_JW_Orientia_Karp_1_1 152.09 114.21 115130000 23706000 60083000 0 6831000 13789000 7759400 2958500 0 935 512;1887 818 5846;5847;5848;5849;5850;5851 3802;3803 3802 2 AYHPHCFTCVVCAR Unmodified 1776.7647 0.76468423 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;Q9BUS0;B4DQX7;B4DQR8;C9JJK5 ZYX Zyxin yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 33.347 33.747 3 0.00049322 9384 20181213_JW_Orientia_Karp_3_1 137.84 118.83 22441000 0 3204100 9231100 0 0 0 10006000 0 936 1812 819 5852;5853;5854 3804 3804 1 AYHSFLVEPISCHAWNK Acetyl (Protein N-term) 2099.9887 0.98873039 301 A4D275;O15143;C9JM51;F8WEB3;C9JTT6;C9JBJ7;C9K057;C9J4Z7;F8VXW2;C9JEY1;C9JQM8;C9JFG9;C9J6C8 ARPC1B Actin-related protein 2/3 complex subunit 1B yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 59.043 59.314 3 0.00027256 24571 20181213_JW_Orientia_Karp_1_3 133.48 99.584 67912000 24326000 30368000 7951400 0 0 4693000 573680 0 937 301 820 5855;5856;5857;5858;5859;5860 3805;3806;3807;3808;3809 3807 5 AYIDIKPIK Unmodified 1059.6328 0.63283187 1256 Karp_00936 yes yes 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 42.913 43.113 3 0.037951 15071 20181213_JW_Orientia_Karp_1_1 80.455 50.788 16495000 12794000 0 2688300 448200 564610 0 0 0 938 1256 821 5861;5862;5863;5864 3810 3810 1 AYIVQLQIEDLTR Unmodified 1560.8512 0.8511575 107 A0A024R588;A0A024R566;B4DJU4;A0A024R5D9;A0A024R572;Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5;C9J792 SF1 Splicing factor 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.704 67.906 2 1.1285E-24 26761 20181213_JW_Orientia_Karp_2_2 227.81 167.37 59762000 5162300 5661800 6393000 0 18768000 4952500 10319000 8504500 939 107 822 5865;5866;5867;5868;5869;5870;5871 3811;3812;3813;3814;3815;3816;3817;3818;3819 3816 9 AYLDGTCVEWLR Unmodified 1481.6973 0.6972994 268 R9WYX8;Q4A1H0;M1KE04;L7X986;I2E8C4;E7BBA1;D1MYY8;C7U1K2;C7E539;C6H0N8;B7VBV1;B6VA02;B6ECH6;B6ECH2;A7MAK2;D0AB29;A5PHP7;Q6IVJ9;Q5SRN7;Q861B7;F6IQV8;F6IQV7;B4E2X4;X5MFE4;A0A060VCY6;A0A060VCY5;Q29840;X5D2K4;D5H3U2;D5H3U1;B2R7U3;B1PKY1;A9YWM1;Q5SRN5;P04439;A0ZXY8;E1B2D6;J7SBK9;D0W032;G8FQ53;D6CIB2;E1Y422;G5CJS3;B7VCC4;W6CHX3;Q7YPW4;F6IQV6;A7DZQ5;X5MPH3;X5MI21;X5MBH2;X5MFD7;A0A060VHD0;A7MAP4;C5IWY0;I0J2M4;A1Z1D7;A0A060VD16;V9N3G0;V9N2U2;U5IQK9;S5CRT1;S4TZI2;S4TZE1;R9R080;R9QZR4;R4I501;R4I3H2;Q9MYA8;Q9GJM2;Q95IY8;Q8HWS5;Q6V117;Q6UJZ9;Q5XLD1;Q5JZM7;Q5FYV2;Q45FD6;Q1M2R8;Q05G01;O78081;M9WP47;M9PNR0;M9PAA7;M9PAA4;M9P8Z4;M9P8Q7;M9P8G3;M4YQG8;M4SNZ1;M4N7U4;M4N6L9;M4N6H6;M1SQT4;M1FYE6;M1FYE3;M1FXT8;M1FWW6;M1FUQ9;M1F5P2;M1F4C0;L7PHV2;L7PHU7;L7PH16;L7PH13;L7PH07;L7PEX4;L7PEW5;L0BVP5;K9LDJ0;K9LCM8;K9LC07;K9LC01;K9L7Y8;K7WPD7;K7P600;K7P5W6;K7P5V7;K7P5U2;K7P5R4;K7P5E0;K7P5B6;K7P562;K7P560;K7P558;K0A058;J9UP83;J9TNR8;J9PWV5;J9PWL3;J7GM07;J7FNZ2;J7F8L2;J7F4Y9;I6SJ64;I6RGW8;I6RGW0;I6QU16;I6NWN3;I6NS25;I6NS19;I6M537;I3UI58;I3UI47;I3QHQ4;I2B305;I2B2Z9;I1W1L8;H9C5F8;H9C5F6;H9BQ78;H6V073;H6UV72;H6UV69;H6UV68;H6UV64;H2DML9;H2BE80;H2BDP5;G9I2J6;G9HW64;G9HW24;G9HRL1;G3DR81;G1EPH8;G1EPG4;G1EPG0;G1EPD3;G1EPB3;G1EPB1;G1EP98;G1EP96;G1EP95;G1EP93;G1EP88;G1EP78;G1EP71;G1EP55;G1EP53;G1EP50;G1EP19;G1EP18;G1EP05;G1ENY5;G1ENC7;G0ZMG9;G0ZMG4;G0ZMG3;G0ZMF4;G0ZDS9;G0WVA6;G0WVA0;F8RHD6;F8RHD1;F8RHC2;F8RHB9;F8R8I1;F8R8I0;F8R119;F8R116;F8R115;F8R110;F8R107;F8R103;F6KRP1;F6KRM4;F6KRL8;F6KRK7;F6KRJ5;F4YU26;F4YU20;F2X609;F2X604;F2X5Y9;F2X5Y4;F2X5Y0;F2X5X9;F2VP64;F2VP60;F2VP51;F2VNJ6;F2VNJ4;F2VNJ2;F2VNJ1;F2VNH3;F2VNH2;F2VNH0;F2VNG0;F2VNF7;F2VNF2;F2VNE0;F2VND5;F2VND0;F2VNC4;F1AQL5;E9LY14;E9LY02;E9LY00;E8ZF52;E7BY93;E7BY85;E5DCM4;E5DCM2;E5DCM1;E5DCM0;E3SWG7;E3SWG4;E3SG86;E3SG82;E2GJD4;E2GJD3;E2DH82;E2DH80;E2DH75;E2DH72;E2D5M3;E2D5L9;E2D5L6;E2D5K9;E0YTJ0;E0YTI8;E0YTI1;E0X9K3;E0X9K2;E0WBY8;E0WBY5;E0WBX4;E0WBX1;E0WBW7;D9IFQ7;D7NSP9;D7NSP0;D7NSN9;D7NPL2;D7NPA6;D7NPA3;D7NP98;D7NP92;D7NP85;D7NP83;D7NNU1;D7NNT9;D7NNT6;D7NNT3;D7NNS8;D7NNS2;D7NNR5;D7NNR3;D7NNP4;D7NNN7;D7NNM6;D6MLN9;D6MLN8;D6MLN3;D6MLM4;D6MLL1;D6MLK6;D6MLK2;D6MLJ4;D6MLJ1;D6MLI3;D6ML63;D6ML56;D6ML55;D6ML54;D6ML50;D6ML46;D6ML44;D6ML42;D6ML40;D6ML35;D6ML33;D6ML18;D6ML17;D6ML16;D6ML10;D6ML09;D6ML06;D6ML04;D6ML01;D6MKY9;D6MJF7;D5M8G4;D5M8G1;D5M8E9;D5M8E4;D5L9A3;D5G2J2;D5FZV4;D5FZI6;D5FIG9;D5FIG8;D5FIG2;D5FHQ9;D5FHN7;D5FHM5;D5FHM3;D5FHM1;D5FHK5;D5FHG0;D5FHF9;D3U484;D3U454;D3U442;D3JT97;D2SSL9;D0RAY3;D0EZK0;D0EZJ9;C9WEL9;C9WEL6;C9WEL3;C9WEL2;C9WEL1;C9E846;C9E1E8;C9E1E7;C8XTP8;C8XTP7;C8XTP2;C8XTN9;C8XTN8;C8XTN7;C8CH74;C8CH66;C7E580;C6K4J6;C6K4I6;C6K4I1;C6K4H8;C6K4H6;C6K4H4;C6K4H3;C6K4H0;C6K4G4;C6K4G0;C6K4F7;C6K4E3;C5J029;C5J027;C5IZR4;C5IZR2;C5IZQ6;C5IZQ3;C4PFZ1;C4PFY9;C0M144;B8YCR7;B8Y1X8;B1PQ33;A7E1C1;A4USG8;A2VBX5;F4NC94;Q3BK35;X2L4X5;U5IT50;S4TZK2;Q95IH7;Q2WBP4;Q29634;M9PA41;M9P9Z3;M9P9G0;M4MD01;M1FWW1;L7PH02;K7P518;J7F7A9;I6MHG0;I3UI56;I2B303;H9BNV2;H6A2C5;H6A2C1;H2DML8;G9HRN9;G9HRL2;G1EPD7;G1EP62;G1EP22;G0X8R5;F8SKV8;F8RHD5;F8RHC9;F6KRL4;F2VYI5;F2VYI1;F2VNI8;F2VNI4;F2VNG7;F2VND6;F2VND2;F1AQL3;E5D6K3;E3SWG1;E3SG81;E0YTI3;E0YTG4;E0YTG3;E0X9Q1;E0X9K1;E0WBZ1;D7NQT1;D7NPA2;D7NNS5;D7NNQ6;D6MLM5;D6ML52;D6ML12;D6MKZ6;D6MKZ4;D6MKY7;D6C6A4;D6BPR1;D5M8G7;D5FIH0;D5FIG6;D5FHQ8;D5FHP0;D3U764;D3U481;D3U477;D2XUR7;D0EP75;C9WEN1;C9WEM4;C8CJN5;C6K4H5;C5IZR9;C0M146;B5LZ21;A8DA04;A7X571;A6H583;A3RKJ9;K7P5I9;G1EP09;F6KRN6;F2VYH3;F2VNH9;E5G0Y7;D5FHR9;Q000J8;K9LC23;I6QU03;E7DZZ8;E2GJG4;D7NPL4;D5FHR2;C9E1D6;C6K4J0;C6K4I3;Q9TQF3;Q9TQF2;G1EP75;F8RHD8;F8R126;F2VNF1;E5D6K2;E3SWG9;D7NQU0;D6MLP4;D6MLN5;D6ML13;D5FHK0;D5FHH3;C7C5G4;C0M140;B8Y6A7;B5ATU8;B5ATU6;Q208P6;Q1G4P0;I6QU20;I3UI62;H2BE91;G1ENE6;G0X8R3;F2VNJ3;F2VNI6;E5G0Y5;D7NSP6;D7NNS3;D7NNN5;D7NNN1;D7NNN0;D7NNM8;D7NNM7;D7NNM2;D6MLH8;D6MLH5;D6MLH3;D6MLH2;D6MLH1;D5L999;D2JZZ8;D1MEQ1;A7E1B9;A5Z1D4;B4DVB9;B4DVC4;I2GUK1;J7FKW9;D4P2Y0;D4P2X9;J7FR13;D6C6C7;A0A060VG20;K7P5E7;O62920;O78168;Q30177;O78086;U5YEJ4;U5YEE9;U5YCH5;H9C3K5;H9C3K4;H9C3I5;H9C3I4;H9C3I2 HLA-A;HLA HLA class I histocompatibility antigen, A-3 alpha chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.229 63.469 2 3.0211E-07 27522 20181213_JW_Orientia_Karp_1_2 182.46 0 57536000 20534000 11827000 19566000 0 0 5170400 438310 0 940 268 823 5872;5873;5874;5875;5876;5877;5878 3820;3821;3822;3823;3824;3825;3826;3827 3822 8 AYLEGECVEWLR Unmodified 1523.7079 0.70786408 267;741 B8XPR9;R9USF5;G1UK08;E9RKA5;T2MJP9;R7RTM7;R4U4H5;R4KW00;Q8SNC9;Q5XNP8;Q06BD1;N0BQN4;L0BUI6;G4V4C1;F8LFN9;F8LFN8;F8LFN6;E9RKA8;D7GM42;C5J3R3;A3F718;Q9GJF1;F4YTD8;B1GYE9;R4ZGR8;F4NC13;F4NBT6;U6BR57;U6BN72;U6BN38;F4NBT0;F4NBS9;F4NBS8;F4NBS7;F4NBS6;F4NBS5;F4NBS4;F4NBS3;F4NBS2;F4NBS1;Q2A133;O19589;Q29934;Q29700;V9HVZ9;S6FM58;S6FC63;Q7YQB0;Q546J0;Q3BK34;P79612;O78189;C7EXL9;C5MK52;C5MK50;C5IUS6;P03989;Q861E8;F4YTD9;Q1ELT3;W0NX86;W0HIK2;U5IS95;U5IRK0;T1WEP8;T1R3B4;T1R3B1;T1R345;S5CK34;R4I500;R4I3I1;Q9TQM3;Q9TPW5;Q9MYH5;Q9MYG2;Q9MYC9;Q9GIM7;Q9GIK7;Q9BD41;Q95ID7;Q8MHM8;Q861A2;Q860P6;Q7YNX0;Q5ND70;Q5K100;Q5EJW0;Q571R8;Q56SH8;Q50HP8;Q50HP7;Q4JHL0;Q4F7G3;Q2KT94;Q2HY01;Q29760;Q1PBK2;Q1PBK1;Q0PF70;O78142;O02861;N0BYB4;N0BX84;N0BSJ1;N0BP58;M9ZRC7;M9PNX0;M9PNT0;M9P9Z9;M9P9L5;M9P8Z2;M4MD28;M4MD08;L7PF05;K7XHB3;K4JES3;J9UMW5;J9TNT0;J7GL06;J7FM87;J7FK28;J7F7C6;J7F7C4;J7F7B2;I6R709;I4ENX3;I3VZ21;I3QHR5;I2B2Y4;H6A2D3;H2E2A5;H2BEA9;G9I2L4;G3LX85;G3D6K3;G3D6J7;G3CC82;G1EPX5;G1EPX3;G1EPU9;G1EPS1;G1EPQ1;G1EPP7;G1EPJ0;G1ENL5;G1ENG9;G1ENG5;G1ENF5;G1EML7;G1EML6;G1EML1;G0ZMH6;G0Z8D6;G0Z8D3;G0Z8C7;G0KXF1;F8R196;F8R192;F8R179;F8R178;F6KS39;F6KRU4;F6KRT5;F5CJE0;F4ZZU4;F4YZT9;F4YU49;F2X5V4;F2X5U8;F2X5U6;F2X5T9;F2X5T8;F2VYI9;F2VNM8;F1AQN8;E9LY48;E7BYA4;E7BY99;E5BD99;E3SWH2;E2GJM9;E2GJJ3;E2DH85;E2D5P8;E0X9J7;D9IFR1;D7NQW2;D7NQW0;D7NPN7;D7GL14;D6Q000;D6MJF1;D6MJB6;D5M8D7;D5FWD4;D5FI30;D5FI29;D5FI22;D5FI04;D5FHX7;D5FHX0;D5FHW9;D5FHW8;D4HPL4;D3U3V9;D3U3U9;D3U3T3;D3U3T2;D3JTA2;D3G9J1;D2SSK6;D2DKR5;D1MER2;D1FXG4;C9WEQ2;C9WEP7;C9WCY2;C9WCT3;C9WCR8;C9E1F6;C7E597;C5IZU0;C5IZT9;C0KLR7;B6D4Y0;B2ZCW3;B2CYA1;B2CY96;B0LUY6;B0FP46;A9YQA1;A1Z3E0;A1Z289;A0A068B2K5;A9XFY2;R4ZGR6;Q9TQI6;Q9TPS7;O19508;Q14838;A0A060CZ20;I7EQF7;A7MAE1;D2KZ34 HLA-B;HLA-B*27;HEL-S-83;HLA-B27;HLA-C;HLA-A HLA class I histocompatibility antigen, B-27 alpha chain no no 0 0 0 0 By matching By matching By MS/MS 1 1 1 60.046 60.463 2 0.016484 20935 20181213_JW_Orientia_Karp_3_1 88.056 6.5317 30531000 0 0 0 11741000 15476000 0 3314100 0 941 741;267 824 5879;5880;5881 3828 3828 1 AYLEGLCVEWLR Unmodified 1507.7493 0.74933497 915;933 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HLA-C;HLA-Cw*03MAC;HLA-Cw*03;HLA-Cw;HLA-B;HLA-B15;HLA-B52v;HLA-B*5603;HLA-B*;HLA-B*1522;HLA-B*5101 variant;HLA-B*15IL;HLA-B*15MD;HLA-B*51IM;HLA-A;HLA-B*58;HLA;HLA-B51;HLA-B*35JAC;HLA-B*35KM;HLA-B35;HLA-B*13;HLA-B1501V2;HLA-B*15UL;HLA-Cw* HLA class I histocompatibility antigen, Cw-3 alpha chain no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 70.91 71.061 2 0.00085358 32130 20181213_JW_Orientia_Karp_1_3 138.22 82.014 44968000 0 0 7369100 6355400 8791900 0 17120000 5331400 942 915;933 825 5882;5883;5884;5885;5886 3829;3830;3831;3832 3829 4 AYLEGTCVQWLR Deamidation (NQ) 1495.7129 0.71294946 861 E2FIL8 HLA-A no no 0 1 0 0 By MS/MS By MS/MS 1 1 60.437 60.967 2 5.7118E-06 22459 20181213_JW_Orientia_Karp_3_2 191.4 12.558 13231000 0 0 0 0 0 0 3076400 10154000 943 861 826 5887;5888 3833;3834 3834 1686 2 AYLPVNESFGFTADLR Unmodified 1798.889 0.88899957 1593 P13639;Q8TA90;B4DPU3 EEF2 Elongation factor 2 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.93 70.074 2 0.0012421 27735 20181213_JW_Orientia_Karp_3_2 133.48 88.362 178560000 40475000 29184000 19190000 11278000 17216000 7808600 41598000 11808000 944 1593 827 5889;5890;5891;5892;5893;5894;5895;5896 3835;3836;3837;3838 3838 4 AYLQQLR Unmodified 890.4974 0.49740102 445 B4DM63;B2R4D5;O15145;Q2LE71 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.453 37.828 2 0.0029371 12199 20181213_JW_Orientia_Karp_1_1 167.23 98.139 151840000 0 41750000 65006000 9260400 8051200 4150000 23618000 0 945 445 828 5897;5898;5899;5900;5901;5902;5903 3839;3840;3841;3842;3843;3844;3845 3839 7 AYNTVVPSSGK Unmodified 1121.5717 0.57168818 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 33.004 33.292 2 0.0035214 9231 20181213_JW_Orientia_Karp_3_1 111.5 71.145 76971000 49977000 0 0 0 10145000 5280200 11569000 0 946 1333 829 5904;5905;5906;5907 3846;3847;3848;3849 3849 4 AYPDVAALSDGYWVVSNR Unmodified 1981.9534 0.95339074 634 B4DSE2;B4E0C7;Q53HP2;D3DQU2;O14773-2;O14773;B2R608;B4DIV8;B4DE89 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 70.627 70.736 2;3 6.2937E-05 25568 20181213_JW_Orientia_Karp_3_1 156.72 119.35 163990000 34147000 47888000 27286000 5192700 13251000 9973900 26251000 0 947 634 830 5908;5909;5910;5911;5912;5913;5914;5915;5916;5917;5918;5919;5920;5921 3850;3851;3852;3853;3854;3855;3856;3857;3858;3859;3860 3860 11 AYQWYIIR Unmodified 1111.5815 0.581465 1175 Karp_00629 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 57.508 57.853 2 0.0041812 22018 20181213_JW_Orientia_Karp_2_3 142.64 83.655 158530000 38160000 16581000 39551000 7520100 19985000 27360000 51427 9323400 948 1175 831 5922;5923;5924;5925;5926;5927;5928;5929;5930 3861;3862;3863;3864;3865;3866;3867 3866 7 AYSDPSTGEPATYGELQQR Unmodified 2068.9338 0.93377751 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS 1 44.952 45.302 2 1.8126E-82 15860 20181213_JW_Orientia_Karp_1_2 302.85 242.6 0 0 0 0 0 0 0 0 0 949 1803 832 5931 3868 3868 1 AYSEAHEISK Unmodified 1133.5353 0.53530267 556 B4DE78;P61981;B3KNB4;B4DHC4 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 19.245 19.663 2;3 0.00379 2254 20181213_JW_Orientia_Karp_3_2 107.15 60.996 8023200 0 4355000 1313700 1112800 569110 551350 0 121200 950 556 833 5932;5933;5934;5935;5936;5937 3869;3870 3870 2 AYSGGVHK Unmodified 817.40825 0.40825167 1293 Karp_01182 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 7.4785 7.7308 2 0.025135 1577 20181213_JW_Orientia_Karp_3_1 85.359 22.381 476780 0 0 51048 0 80927 0 101190 243620 951 1293 834 5938;5939;5940;5941 3871;3872 3872 2 AYSSFGGGR Unmodified 900.40898 0.40897995 603 Q75MU1;B4DMV6;Q75MU2;Q15056-2;Q15056 WBSCR1;EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 28.121 28.471 2 0.011131 6072 20181213_JW_Orientia_Karp_2_2 91.853 61.185 7646900 0 0 0 2572900 3139100 1934900 0 0 952 603 835 5942;5943;5944 3873;3874;3875 3874 3 AYTNFDAER Unmodified 1085.4778 0.47778779 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YKS4;B4DNH8;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 35.433 35.767 2 0.00024661 11141 20181213_JW_Orientia_Karp_1_1 169.41 113.88 643910000 209550000 196190000 142920000 20172000 11665000 0 63413000 0 953 124 836 5945;5946;5947;5948;5949;5950;5951 3876;3877;3878;3879;3880;3881;3882 3876 7 AYVVLGQFLVLK Unmodified 1348.8119 0.81185887 112 A0A024R5H0;O75531;B2R4V4 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.928 72.986 2 4.607E-23 33664 20181213_JW_Orientia_Karp_1_2 235.12 183.59 689780000 159270000 115320000 97037000 0 23425000 22634000 260910000 11188000 954 112 837 5952;5953;5954;5955;5956;5957;5958 3883;3884;3885;3886;3887;3888;3889 3884 7 CCTESLVNR Unmodified 1137.4907 0.49067744 792;620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;B2RBS8;B7WNR0;B4DPR2;Q8IUK7;C9JKR2;H0YA55;D6RHD5;P02768-2;CON__P02769 ALB Serum albumin no no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 30.06 30.538 2 0.0062275 8657 20181213_JW_Orientia_Karp_1_1 101.54 68.65 4778100 3116300 0 0 620550 0 0 743230 298080 + 955 620;792 838 5959;5960;5961;5962 3890 3890 1 CEDILQQLQAVVPQIDMEGDR Oxidation (M);Deamidation (NQ) 2473.1465 0.14648918 1714 P59998-2;E5RGZ6;C9JSD3;B2RCJ2;H3BLT7;H0Y5E3;B4DM47;J3KQB2;Q9Y4R7-2;Q9Y4R7-5;Q9Y4R7 ARPC4;TTLL3 Actin-related protein 2/3 complex subunit 4;Tubulin monoglycylase TTLL3 yes no 0 1 1 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 62.872 63.15 3 0.023844 27278 20181213_JW_Orientia_Karp_1_2 59.585 18.73 36410000 12738000 17704000 0 0 4213100 0 0 1754700 956 1714 839 5963;5964;5965;5966 3891;3892 3891 1958;1959 1337 0 CGLVMLNNLVK Oxidation (M);2 Deamidation (NQ) 1277.6359 0.63594469 62 H0Y7P8;A0A024R223;A0A024R238;Q96RL7-4;Q96RL7-2;Q96RL7-3;Q96RL7 VPS13A Vacuolar protein sorting-associated protein 13A yes no 0 2 1 0 By MS/MS 1 75.381 75.379 2 0.011158 34860 20181213_JW_Orientia_Karp_1_3 87.616 40.725 0 0 0 0 0 0 0 0 0 957 62 840 5967 3893 3893 24;25 65 1 CLHMFLQDEIIDK Unmodified 1660.7953 0.79529888 1514 O60493;O60493-4;O60493-2 SNX3 Sorting nexin-3 yes no 0 0 0 0 By MS/MS 1 58.975 59.173 2 0.025966 24502 20181213_JW_Orientia_Karp_1_3 93.598 17.945 0 0 0 0 0 0 0 0 0 958 1514 841 5968 3894 3894 1 CLWSPWMDVSR Unmodified 1435.6377 0.63767603 1755 T1S9D5;P98088 MUC5AC Mucin-5AC yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 61.211 61.536 2 0.0025626 23974 20181213_JW_Orientia_Karp_2_1 115.49 70.472 28450000 0 4435700 4379500 5719800 7145700 5847200 922000 0 959 1755 842 5969;5970;5971;5972;5973;5974 3895 3895 1 CVAIEQSYGPPK Unmodified 1347.6493 0.64928657 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 40.882 41.182 2 0.00092079 13592 20181213_JW_Orientia_Karp_1_2 144.55 88.002 246460000 62703000 64623000 51288000 30621000 1362500 0 35863000 0 960 1296 843 5975;5976;5977;5978;5979;5980;5981 3896;3897;3898;3899;3900 3897 5 CVDLVIQELINTVR 2 Deamidation (NQ) 1672.8706 0.87057232 1693 P50570-2;P50570-5;P50570 DNM2 Dynamin-2 yes no 0 2 0 0 By MS/MS 1 70.977 71.126 3 0.0182 32394 20181213_JW_Orientia_Karp_1_2 89.46 22.441 0 0 0 0 0 0 0 0 0 961 1693 844 5982 3901 3901 1124;1956 1 CVENQIYEFRVQTK Deamidation (NQ) 1813.8669 0.86688392 1925 Q8WZ42-12;D3DPF9;C0JYZ2;D3DPG0;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13 TTN Titin yes no 0 1 0 1 By MS/MS By MS/MS 1 1 74.852 74.877 2 0.026619 34778 20181213_JW_Orientia_Karp_1_1 125.74 46.078 460220000 222670000 0 0 0 0 0 237550000 0 962 1925 845 5983;5984 3902;3903 3902 1200;2061;2062 2 CVENQIYEFRVQTK 3 Deamidation (NQ) 1815.8349 0.83491509 1925 Q8WZ42-12;D3DPF9;C0JYZ2;D3DPG0;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13 TTN Titin yes no 0 3 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 76.748 76.74 2 0.011289 36313 20181213_JW_Orientia_Karp_1_2 93.258 14.605 79053000 11514000 20509000 7200800 6770400 7741100 6490800 18827000 0 963 1925 845 5985;5986;5987;5988;5989;5990;5991 3904 3904 1200;2061;2062 0 CVERINEMVNRAK Oxidation (M) 1633.8028 0.80284388 971 H7C1L7;H0YEB7;H7C3G9;Q9UJ70;Q9UJ70-2 NAGK N-acetyl-D-glucosamine kinase yes no 0 0 1 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 58.206 58.506 2 0.020956 24297 20181213_JW_Orientia_Karp_1_2 96.143 17.63 61725000 17948000 15264000 14893000 6118600 7448800 0 51775 0 964 971 846 5992;5993;5994;5995;5996;5997 3905 3905 541 0 DAALATALGDKK Unmodified 1172.6401 0.6401021 1613 P20700;E9PBF6;Q6DC98 LMNB1 Lamin-B1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 37.301 37.634 2 0.00070931 11589 20181213_JW_Orientia_Karp_1_3 161.51 84.194 62346000 20903000 14398000 18442000 4231700 1662500 0 2708900 0 965 1613 847 5998;5999;6000;6001;6002;6003 3906;3907;3908;3909;3910 3908 5 DAASLESQLQDTQELLQEETR Unmodified 2403.1401 0.14014147 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 72.732 72.801 2;3 0.0032125 33462 20181213_JW_Orientia_Karp_1_1 131.31 101.03 78966000 44456000 0 30697000 0 0 0 0 3812200 966 944 848 6004;6005;6006;6007 3911;3912;3913 3911 1 DADDAVYELDGK Unmodified 1309.5674 0.56739066 136 A0A024R6D8;Q59EK7;Q13243;G3V5K8;B4DJK0;B4DUA4;Q13243-2;Q13243-3;B5BUD8 SFRS5;SRSF5 Serine/arginine-rich splicing factor 5 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 50.978 51.285 2 0.0017146 18226 20181213_JW_Orientia_Karp_2_1 125.23 10.221 27806000 3890000 4575600 4544100 5519200 3292500 4973500 1011400 0 967 136 849 6008;6009;6010;6011;6012;6013;6014 3914 3914 1 DADPILISLR Unmodified 1111.6237 0.62372375 113 Q9NSK3;A0A024R5K1;Q9BR76 DKFZp762I166;CORO1B Coronin;Coronin-1B yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 66.531 66.606 2 0.00093054 29134 20181213_JW_Orientia_Karp_1_3 125.71 60.248 56623000 37314000 0 11104000 0 5416000 2790000 0 0 968 113 850 6015;6016;6017;6018;6019 3915;3916;3917 3916 3 DAEAWFNEK Unmodified 1108.4825 0.48253882 798 CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 51.536 51.881 2 5.0491E-09 18527 20181213_JW_Orientia_Karp_2_2 214.29 128.15 2152100000 262450000 304570000 253060000 603560000 271960000 421410000 22940000 12179000 + 969 798 851 6020;6021;6022;6023;6024;6025;6026;6027 3918;3919;3920;3921;3922;3923 3922 6 DAEAWFNEK Deamidation (NQ) 1109.4666 0.46655441 798 CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.783 54.099 2 0.001462 19695 20181213_JW_Orientia_Karp_2_1 140.83 82.231 104820000 9673300 21831000 15822000 15868000 13483000 25319000 0 2827300 + 970 798 851 6028;6029;6030;6031;6032;6033;6034 3924;3925;3926;3927;3928;3929 3927 275 6 DAEDAVYGR Unmodified 994.43559 0.43558863 1040 Q59FA2;J3KTL2;Q07955-3;Q07955;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 By MS/MS 1 34.763 34.763 2 0.011735 10675 20181213_JW_Orientia_Karp_1_1 114.5 60.293 0 0 0 0 0 0 0 0 0 971 1040 852 6035 3930 3930 1 DAEDWFFSK Unmodified 1143.4873 0.48728985 924;807 CON__Q04695;CON__Q9QWL7;Q04695;Q14666;K7ESE1;F5GWP8 KRT17 Keratin, type I cytoskeletal 17 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.606 67.768 2 0.00079715 26400 20181213_JW_Orientia_Karp_3_2 141.52 91.984 16128000 5587400 0 2918400 0 3194100 1908700 0 2519400 + 972 807;924 853 6036;6037;6038;6039;6040 3931;3932;3933;3934;3935 3935 5 DAEEWFFTK Unmodified 1171.5186 0.51858998 790 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.953 66.12 2 1.8168E-09 25476 20181213_JW_Orientia_Karp_3_2 209.84 147.73 133260000 19926000 8411600 23839000 0 48751000 21595000 10735000 0 + 973 790 854 6041;6042;6043;6044;6045;6046;6047 3936;3937;3938;3939;3940;3941;3942 3942 7 DAEEWFHAK Unmodified 1131.4985 0.49852324 277 CON__P13646-1;A8K2H9;A1A4E9;B4DL17;A4FUA1 KRT13;GUCA1B yes no 0 0 0 0 By MS/MS By MS/MS 1 1 42.754 43.335 2 0.0044131 13987 20181213_JW_Orientia_Karp_3_1 107.01 77.837 10326000 0 0 0 0 0 0 9239300 1087000 + 974 277 855 6048;6049 3943;3944 3943 2 DAETWFLSK Unmodified 1095.5237 0.52367535 795 CON__P08779;P08779;K7ENW6;Q16195 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 62.492 62.745 2 0.00024542 23470 20181213_JW_Orientia_Karp_3_2 172.21 84.891 34705000 16226000 1843700 0 0 8259600 5076200 0 3299000 + 975 795 856 6050;6051;6052;6053;6054;6055;6056 3945;3946;3947;3948;3949;3950 3950 6 DAFADAVQR Unmodified 991.47231 0.47230849 1930;645 B4DV73;Q92945;M0R0I5 KHSRP Far upstream element-binding protein 2 no no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 42.441 42.893 2 0.0163 13620 20181213_JW_Orientia_Karp_2_1 107.57 13.926 10371000 0 0 0 0 0 1290900 9080000 0 976 645;1930 857 6057;6058;6059 3951;3952 3951 2 DAFASGGSDGYDHK Unmodified 1425.5797 0.57968668 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 29.94 30.189 2 0.012765 7953 20181213_JW_Orientia_Karp_1_3 93.839 55.035 13700000 5505500 0 5101300 1527900 1565200 0 0 0 977 1449 858 6060;6061;6062;6063 3953;3954 3954 2 DAFLGSFLYEYSR Unmodified 1566.7355 0.73545904 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 74.47 74.504 2 2.4423E-58 34599 20181213_JW_Orientia_Karp_1_1 275.11 160.25 1635400000 220440000 260860000 323910000 75813000 257320000 139100000 231230000 126710000 + 978 792 859 6064;6065;6066;6067;6068;6069;6070;6071;6072 3955;3956;3957;3958;3959;3960;3961;3962;3963;3964 3955 10 DAFVAIVQSVK Unmodified 1175.655 0.65502388 1570 P08133-2;P08133;Q6ZP35;E7EMC6;E5RK69;B7Z582;A8K3Q7 ANXA6 Annexin A6;Annexin yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 63.668 63.835 2 0.00096513 27385 20181213_JW_Orientia_Karp_1_3 129.89 74.777 14187000 0 2437800 9447500 0 0 2301800 0 0 979 1570 860 6073;6074;6075;6076 3965;3966;3967 3966 3 DAGEGGLSLAIEGPSK Unmodified 1499.7468 0.74675201 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;B4DTD5 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 1 1 58.298 58.85 2 0.00076947 20379 20181213_JW_Orientia_Karp_3_1 131.08 95.083 6461200 0 0 0 0 0 0 6461200 0 980 1615 861 6077;6078 3968;3969 3969 2 DAGEGLLAVQITDPEGKPK Unmodified 1937.0106 0.010571271 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 57.075 57.385 2 8.0294E-16 23612 20181213_JW_Orientia_Karp_1_2 196.8 96.115 83331000 28486000 23960000 13278000 5231400 4242200 0 0 8133700 981 1615 862 6079;6080;6081;6082;6083;6084 3970;3971;3972 3971 3 DAGEGLLAVQITDQEGK Unmodified 1742.8687 0.86865806 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 63.819 64.041 2 3.1658E-06 27550 20181213_JW_Orientia_Karp_1_3 151.56 115.88 23526000 9055900 7705900 6000800 212380 0 0 0 551260 982 1520 863 6085;6086;6087;6088;6089 3973;3974 3974 2 DAGEGLLAVQITDQEGKPK Unmodified 1968.0164 0.016384931 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.257 54.524 3 1.4098E-05 21769 20181213_JW_Orientia_Karp_1_2 147.53 74.873 427140000 161810000 144550000 68584000 13635000 19644000 18914000 0 0 983 1520 864 6090;6091;6092;6093;6094;6095 3975;3976;3977;3978;3979;3980 3976 6 DAGQIAGLEVLR Unmodified 1240.6776 0.67755023 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 1 1 1 1 1 2 62.381 62.7 2 3.9806E-40 24196 20181213_JW_Orientia_Karp_2_2 262.07 160.74 5013900000 1547900000 662900000 1596000000 61030000 519240000 455970000 200900 170570000 984 1074 865 6096;6097;6098;6099;6100;6101;6102;6103;6104;6105;6106 3981;3982;3983;3984;3985;3986;3987;3988 3986 8 DAGQISGLNVLR Unmodified 1241.6728 0.67279921 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;B7Z4T3 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.701 58.003 2 3.8616E-23 24007 20181213_JW_Orientia_Karp_1_2 270.36 147.15 172850000 26418000 76709000 29410000 5814200 17882000 11323000 0 5293000 985 721 866 6107;6108;6109;6110;6111;6112;6113 3989;3990;3991;3992;3993;3994;3995 3990 7 DAGTIAGLNVLR Unmodified 1198.667 0.66698555 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;B4E1Q1;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PI65;A4D111 HEL-S-72p;HSPA8;LOC401308 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 62.002 62.245 2 3.4064E-11 24304 20181213_JW_Orientia_Karp_2_3 200.71 128.48 235880000 57511000 66210000 21714000 0 34773000 47688000 0 7984700 986 1586 867 6114;6115;6116;6117;6118;6119;6120;6121 3996;3997;3998;3999;4000;4001;4002 4001 7 DAGTIAGLNVMR Oxidation (M) 1232.6183 0.6183208 1585 V9HWB4;P11021;B4DEF7 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.657 49.959 2 1.5495E-11 17685 20181213_JW_Orientia_Karp_2_3 205.18 146.74 194590000 50192000 23903000 27622000 39381000 18624000 27304000 0 7563800 987 1585 868 6122;6123;6124;6125;6126;6127;6128 4003;4004;4005;4006;4007;4008;4009 4008 1204 7 DAGTIAGLNVMR Unmodified 1216.6234 0.62340617 1585 V9HWB4;P11021;B4DEF7 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 57.736 58.058 2 1.7211E-07 24054 20181213_JW_Orientia_Karp_1_2 187.99 123.79 70789000 15318000 33286000 14845000 5219900 0 0 0 2119800 988 1585 868 6129;6130;6131;6132;6133 4010;4011;4012;4013 4011 4 DAGTITFQNHNTGK Unmodified 1502.7114 0.71136956 1118 Karp_00308 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 31.9 32.25 2 0.00086989 8924 20181213_JW_Orientia_Karp_1_3 138.42 78.025 22900000 6771300 6379600 5356900 1073500 0 0 3318900 0 989 1118 869 6134;6135;6136;6137;6138;6139 4014;4015;4016;4017;4018 4014 5 DAGVIAGLNVLR Unmodified 1196.6877 0.68772099 369 A8K5I0;P08107-2;P08107;B4DNT8;Q59EJ3;B4DI39;B4DWK5;B4DVU9;B4E1S9;Q9UQC1 HEL-S-103;HSPA1A;HSP70-1 Heat shock 70 kDa protein 1A no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 66.767 66.877 2 0.0035874 26584 20181213_JW_Orientia_Karp_2_3 113.93 30.662 24195000 8164900 2643100 5610400 0 3469500 4307400 0 0 990 369 870 6140;6141;6142;6143;6144 4019;4020;4021;4022 4022 4 DAGYGGISLAVEGPSK Unmodified 1519.7518 0.75183739 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 58.71 58.98 2 1.3817E-06 24356 20181213_JW_Orientia_Karp_1_3 173.72 35.697 112820000 34027000 33869000 38201000 0 0 4540900 2179700 0 991 1520 871 6145;6146;6147;6148;6149;6150 4023;4024 4023 2 DAHNNDYSSDDNLLATGQQNK Unmodified 2319 0.9999596 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 41.495 41.678 3 0.00041769 14262 20181213_JW_Orientia_Karp_1_1 105.5 68.409 70875000 27400000 27154000 16321000 0 0 0 0 0 992 1358 872 6151;6152;6153 4025;4026 4025 2 DAHNNDYSSDDNLLATGQQNK Deamidation (NQ) 2319.984 0.98397518 1358 Karp_01807 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 44.192 44.422 3 0.02913 15678 20181213_JW_Orientia_Karp_1_1 68.411 39.8 22573000 7570300 6080100 6410900 682600 1829000 0 0 0 993 1358 872 6154;6155;6156;6157;6158 4027 4027 814;815;816 1 DAIFELDEQK Unmodified 1206.5768 0.57683314 1103 Karp_00280 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 57.361 57.681 2 2.6144E-05 24146 20181213_JW_Orientia_Karp_1_1 160.82 89.208 85455000 39398000 0 0 10390000 22535000 13040000 91610 0 994 1103 873 6159;6160;6161;6162;6163 4028;4029 4028 2 DAIHFYNK Unmodified 1006.4872 0.48723027 377 V9HW72;A8K690;P31948;P31948-2;P31948-3 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.198 36.489 2 0.0051335 9958 20181213_JW_Orientia_Karp_2_2 120.62 54.548 35652000 13018000 11078000 5197900 0 2674700 0 3683600 0 995 377 874 6164;6165;6166;6167;6168;6169 4030;4031;4032;4033 4032 4 DAIPENLPPLTADFAEDK Unmodified 1954.9524 0.95238769 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 2 72.597 72.655 2;3 0.00070486 33421 20181213_JW_Orientia_Karp_1_2 118.52 80.285 8589400000 1240000000 757460000 926660000 683410000 1065500000 1110900000 2143900000 661620000 + 996 792 875 6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183 4034;4035;4036;4037;4038;4039;4040;4041 4035 8 DALLLIFANK Unmodified 1116.6543 0.6542956 403 A8K9U9;P36406-3;P36406-2;P36406 TRIM23 E3 ubiquitin-protein ligase TRIM23 yes no 0 0 0 0 By MS/MS 1 72.52 72.57 2 0.002582 26698 20181213_JW_Orientia_Karp_3_1 143.28 0 0 0 0 0 0 0 0 0 0 997 403 876 6184 4042 4042 1 DALLSQEHEQK Unmodified 1296.631 0.63099397 1201 Karp_00820 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 27.623 27.981 2 1.3414E-25 7421 20181213_JW_Orientia_Karp_1_1 223.87 156.38 143090000 28595000 13140000 61861000 10374000 8126800 4991000 9015900 6989700 998 1201 877 6185;6186;6187;6188;6189;6190;6191;6192 4043;4044;4045;4046;4047;4048;4049;4050;4051 4043 9 DALNIDGLGR Unmodified 1042.5407 0.5407224 1202 Karp_00823 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 55.486 55.697 2 0.0035126 22899 20181213_JW_Orientia_Karp_1_1 107.79 50.74 20578000 7515500 3101600 5095500 0 2050800 2815000 0 0 999 1202 878 6193;6194;6195;6196;6197 4052;4053;4054 4052 3 DALNIETAIK Unmodified 1086.5921 0.59208927 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YKS4;B4DNH8;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 54.844 55.16 2 0.00012885 20483 20181213_JW_Orientia_Karp_2_3 147.73 54.537 1085300000 2204300 235960000 539550000 141600000 72917000 92580000 0 463000 1000 124 879 6198;6199;6200;6201;6202;6203;6204;6205 4055;4056;4057;4058;4059;4060;4061 4060 7 DANVSGTLVSSSTLEK Unmodified 1606.805 0.80499517 1942 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 50.197 50.548 2 3.086E-05 17958 20181213_JW_Orientia_Karp_2_3 155.14 90.324 8037300 0 0 0 0 3087300 2857400 2092600 0 1001 1942 880 6206;6207;6208 4062 4062 1 DAPSGIGSIFLSASELEDGSEEMGQGAVSSSPR Unmodified 3266.4885 0.488495 1495 Q5T765;O14879;B4DLS7 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 75.271 75.304 3 0.00044924 28154 20181213_JW_Orientia_Karp_3_1 65.73 39.602 36741000 21559000 12794000 0 0 0 0 2387700 0 1002 1495 881 6209;6210;6211 4063;4064 4064 2 DAPVSYPDSQLMQAAQVKLTCANEKVIFAPPMR Oxidation (M);4 Deamidation (NQ) 3694.7569 0.75687105 2022 yes no 0 4 1 2 By MS/MS 1 67.693 67.943 3 0.042987 30284 20181213_JW_Orientia_Karp_1_2 42.828 14.786 6080200 0 6080200 0 0 0 0 0 0 + 1003 2022 882 6212 4065 4065 2116;2117;2118 0 DAQFYCELNYR Unmodified 1477.6296 0.62961376 79 B2R642;A0A024R3I5;P43121;A8K6A6;B3KXZ9;P43121-2 MCAM Cell surface glycoprotein MUC18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 1 1 55.057 55.401 2 0.00067026 22035 20181213_JW_Orientia_Karp_1_3 146.71 107.96 55609000 18761000 8783100 13833000 3153700 5583300 4460000 0 1034300 1004 79 883 6213;6214;6215;6216;6217;6218;6219;6220 4066;4067;4068;4069;4070;4071 4068 6 DAQHYGGWEHR Unmodified 1354.5803 0.58029581 111 B4DIW2;F5H6X6;B4DSM6;A0A024R592;E9PKU7;B4DZ53;V9HWJ0;B4DJ30;Q14697;Q14697-2 GANAB;HEL-S-164nA Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 24.634 25.116 3 0.0063441 4831 20181213_JW_Orientia_Karp_2_2 86.911 58.997 15657000 0 7084200 0 2519100 2084800 0 2883100 1085500 1005 111 884 6221;6222;6223;6224;6225;6226 4072;4073;4074;4075;4076 4075 5 DASGYVVNQDNADSQQVDNK Unmodified 2165.9461 0.94613311 1144 Karp_00459 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 40.603 40.87 2;3 4.6724E-173 13716 20181213_JW_Orientia_Karp_1_1 386.06 300.54 205300000 78067000 37803000 51696000 0 6867000 5496700 25372000 0 1006 1144 885 6227;6228;6229;6230;6231;6232;6233;6234;6235;6236;6237;6238;6239 4077;4078;4079;4080;4081;4082;4083 4077 7 DASGYVVNQDNADSQQVDNK Deamidation (NQ) 2166.9301 0.9301487 1144 Karp_00459 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS 2 1 1 42.261 42.561 2 1.6743E-74 14310 20181213_JW_Orientia_Karp_1_3 276.1 223.06 13166000 0 7584500 5581700 0 0 0 0 0 1007 1144 885 6240;6241;6242;6243 4084;4085;4086 4085 532 3 DASIVGFFDDSFSEAHSEFLK Unmodified 2347.0645 0.064457335 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 74.041 74.083 3 0.0041145 34043 20181213_JW_Orientia_Karp_1_3 83.253 52.825 138520000 44945000 30776000 40473000 11368000 10058000 0 0 896850 1008 516 886 6244;6245;6246;6247;6248;6249 4087;4088;4089;4090 4089 4 DASTTIELVPYQANELTPEK Unmodified 2218.1005 0.10050849 1182 Karp_00659 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.781 68.951 2 6.7688E-17 24519 20181213_JW_Orientia_Karp_3_1 244 192.39 1010900000 170410000 128850000 210970000 51822000 103850000 67707000 208900000 68390000 1009 1182 887 6250;6251;6252;6253;6254;6255;6256;6257 4091;4092;4093;4094;4095;4096;4097;4098;4099;4100 4098 10 DASTTIELVPYQANELTPEK Deamidation (NQ) 2219.0845 0.084524076 1182 Karp_00659 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 70.13 70.274 2;3 1.0027E-19 31491 20181213_JW_Orientia_Karp_1_3 196.18 134.1 202180000 57715000 23886000 37986000 5457800 19255000 11086000 37779000 9018500 1010 1182 887 6258;6259;6260;6261;6262;6263;6264;6265;6266;6267;6268;6269;6270;6271;6272;6273 4101;4102;4103;4104;4105;4106;4107;4108;4109 4104 594;1819 9 DASVAEAWLLGQEPYLSSR Unmodified 2091.0273 0.027283968 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2;B4DIF8 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 74.59 74.631 2 0.0069828 34696 20181213_JW_Orientia_Karp_1_2 94.45 52.873 21855000 5980300 5657800 7150800 0 0 0 1321600 1744300 1011 506 888 6274;6275;6276;6277;6278 4110;4111 4110 2 DATGAAMTSCK Oxidation (M) 1127.4587 0.45870861 1346 Karp_01522 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 17.659 18.051 2 8.5343E-05 3567 20181213_JW_Orientia_Karp_1_3 160.75 121.45 11533000 0 793210 3658500 1175800 0 1312600 0 4593300 1012 1346 889 6279;6280;6281;6282;6283;6284 4112;4113;4114;4115;4116 4113 912 5 DATGAAMTSCK Unmodified 1111.4638 0.46379399 1346 Karp_01522 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 26.77 27.152 2 0.034733 6647 20181213_JW_Orientia_Karp_1_3 105.2 65.194 9458100 1440500 2492300 3122800 0 0 0 2027100 375410 1013 1346 889 6285;6286;6287;6288;6289 4117 4117 0 DATGNLEAPLR Unmodified 1155.5884 0.58840088 1386 Karp_02134 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 47.259 47.549 2 0.012743 16935 20181213_JW_Orientia_Karp_1_3 91.313 43.465 24944000 6498600 9688300 6036000 0 0 0 0 2721300 1014 1386 890 6290;6291;6292;6293 4118;4119;4120 4120 3 DAVEDLESVGK Unmodified 1160.5561 0.55609769 1752 P81605;P81605-2 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 51.095 51.345 2 0.0033149 18417 20181213_JW_Orientia_Karp_2_3 112.36 64.266 50865000 5691700 10713000 9293100 9741900 6202900 9221600 0 0 1015 1752 891 6294;6295;6296;6297;6298;6299 4121;4122;4123 4123 3 DAVLLLFANK Unmodified 1102.6386 0.63864553 767 U3KQF2;C9JPM4;C9JAK5;P18085 ARF4 ADP-ribosylation factor 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 71.992 72.092 2 5.0787E-06 32693 20181213_JW_Orientia_Karp_1_3 171.73 117.77 29392000 9360200 3498500 9666900 0 0 0 6866400 0 1016 767 892 6300;6301;6302;6303 4124;4125;4126 4126 2 DAVLLVFANK Unmodified 1088.623 0.62299547 38 B4E190;C9J1Z8;B4DEB9;A4D0Z3;A0A024R3Q3;A0A024R0Y6;F5H423;B4DLJ3;B7ZB63;P84085;P84077;P61204 ARF5;ARF1;ARF3 ADP-ribosylation factor 3;ADP-ribosylation factor 5;ADP-ribosylation factor 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.006 67.292 2 1.4308E-07 29556 20181213_JW_Orientia_Karp_1_3 194.29 154.23 84143000 0 4796900 66731000 0 0 0 0 12615000 1017 38 893 6304;6305;6306;6307;6308;6309 4127;4128;4129;4130;4131;4132 4129 6 DAVQELLTSSMYK Oxidation (M) 1499.7178 0.71776007 1361 Karp_01814 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.988 61.308 2 2.6165E-11 23858 20181213_JW_Orientia_Karp_2_1 198.55 150.12 105450000 17329000 18651000 27227000 6020900 18283000 12626000 1175900 4142300 1018 1361 894 6310;6311;6312;6313;6314;6315;6316;6317 4133;4134;4135;4136;4137;4138;4139 4136 939 7 DAVQELLTSSMYK Unmodified 1483.7228 0.72284545 1361 Karp_01814 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 68.009 68.216 2 3.0336E-11 30641 20181213_JW_Orientia_Karp_1_1 198.97 103.61 62295000 20421000 6503200 12161000 2981200 6249500 2538400 8892900 2548000 1019 1361 894 6318;6319;6320;6321;6322;6323;6324;6325 4140 4140 1 DAVTYTEHAK Unmodified 1133.5353 0.53530267 447 B2R4R0;P62805;Q0VAS5 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 4 2 2 3 3 2 24.195 24.529 2;3 3.9793E-12 5425 20181213_JW_Orientia_Karp_1_2 195.05 126.66 2388800000 864830000 802010000 281400000 25679000 23257000 23450000 205710000 162400000 1020 447 895 6326;6327;6328;6329;6330;6331;6332;6333;6334;6335;6336;6337;6338;6339;6340;6341;6342;6343;6344;6345;6346;6347;6348 4141;4142;4143;4144;4145;4146;4147;4148;4149;4150;4151;4152;4153;4154;4155 4143 15 DAVVYPILVEFTR Unmodified 1520.8239 0.82388012 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;E9PJ21;Q05D91;Q6IN67;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 75.59 75.61 2 0.014898 35422 20181213_JW_Orientia_Karp_1_2 91.313 48.017 83263000 24549000 23045000 20832000 1653200 1951500 2353300 7707500 1172400 1021 545 896 6349;6350;6351;6352;6353;6354;6355;6356 4156 4156 1 DAYQVILDGVK Unmodified 1219.6449 0.64485312 553 E9PQK6;B4DDR3;G3V1C3;Q9BZZ5-3;Q9BZZ5-2;Q9BZZ5;B4E283 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 62.574 62.749 2 0.0042764 27089 20181213_JW_Orientia_Karp_1_2 108.35 65.546 14685000 11175000 3510100 0 0 0 0 0 0 1022 553 897 6357;6358 4157;4158 4158 2 DCIGGCSDLVSLQQSGELLTR Unmodified 2307.0835 0.083494993 203 A0A024RAM2;P35754 GLRX Glutaredoxin-1 yes no 0 0 0 0 By MS/MS 1 68.542 68.892 2 0.0049133 24510 20181213_JW_Orientia_Karp_3_1 117.13 73.14 2729400 0 0 0 0 0 0 2729400 0 1023 203 898 6359 4159 4159 1 DCLFDTVAFSNHSIK Unmodified 1752.8141 0.81412007 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 58.846 59.056 3 0.010803 25092 20181213_JW_Orientia_Karp_1_1 77.633 33.642 66429000 15347000 13441000 21447000 0 6922900 9270900 0 0 1024 1162 899 6360;6361;6362;6363;6364 4160;4161;4162;4163 4160 4 DDATTNMLLITNK Unmodified 1448.7181 0.71809442 1213 Karp_00875 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 61.181 61.181 2 3.4925E-42 26118 20181213_JW_Orientia_Karp_1_2 265 182.58 25166000 25166000 0 0 0 0 0 0 0 1025 1213 900 6365;6366 4164;4165 4165 2 DDATTNMLLITNK Oxidation (M) 1464.713 0.71300904 1213 Karp_00875 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 50.954 51.291 2 2.0625E-11 19549 20181213_JW_Orientia_Karp_1_2 201.09 125.71 35226000 0 14564000 11267000 5025700 0 4369500 0 0 1026 1213 900 6367;6368;6369;6370 4166;4167;4168 4166 772 3 DDDIAALVVDNGSGMCK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1837.771 0.77099421 1717 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;B4DW52;G5E9R0;E7EVS6;C9JZR7;C9JTX5 PS1TP5BP1;ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 1 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 1 74.749 74.779 2 1.0367E-23 34446 20181213_JW_Orientia_Karp_1_1 220.32 192.41 534780000 127450000 84728000 150450000 0 20837000 28951000 66432000 55925000 1027 1717 901 6371;6372;6373;6374;6375;6376;6377;6378;6379;6380;6381 4169;4170;4171;4172;4173;4174;4175;4176;4177;4178;4179 4169 1131 1339 10 DDDIAALVVDNGSGMCK Acetyl (Protein N-term);Deamidation (NQ) 1821.7761 0.77607958 1717 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;B4DW52;G5E9R0;E7EVS6;C9JZR7;C9JTX5 PS1TP5BP1;ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 1 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 75.969 75.97 2 2.4563E-83 35354 20181213_JW_Orientia_Karp_1_1 292.8 253.02 661000000 196370000 75409000 119500000 25303000 26509000 24381000 165760000 27769000 1028 1717 901 6382;6383;6384;6385;6386;6387;6388;6389;6390;6391;6392;6393;6394;6395;6396 4180;4181;4182;4183;4184;4185;4186;4187;4188;4189;4190 4180 1131 9 DDDIAALVVDNGSGMCK Acetyl (Protein N-term) 1820.7921 0.792064 1717 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;B4DW52;G5E9R0;E7EVS6;C9JZR7;C9JTX5 PS1TP5BP1;ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 1 0 0 0 By MS/MS By matching 1 1 74.723 74.722 2 0.035379 34741 20181213_JW_Orientia_Karp_1_1 67.095 42.586 13595000 9523100 0 4072400 0 0 0 0 0 1029 1717 901 6397;6398 4191 4191 0 DDEMIAIVPK Oxidation (M) 1145.5638 0.56382561 1427 Karp_02373 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 52.319 52.319 2 0.00097468 20656 20181213_JW_Orientia_Karp_1_1 120.87 79.986 14684000 14684000 0 0 0 0 0 0 0 1030 1427 902 6399;6400;6401;6402;6403 4192;4193;4194;4195;4196 4192 1027 5 DDEMIAIVPK Unmodified 1129.5689 0.56891099 1427 Karp_02373 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 61.018 61.218 2 0.0011716 23831 20181213_JW_Orientia_Karp_2_3 120.87 72.909 59174000 30013000 9739100 12608000 0 0 6814100 0 0 1031 1427 902 6404;6405;6406;6407;6408 4197;4198;4199;4200 4199 3 DDEYDYLFK Unmodified 1206.5081 0.50808487 1811 Q15907;B4DQU5;H3BMH2;H3BSC1;A0A024R5Z8;B4DMN1;P62491-2;Q15907-2;P62491 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 By MS/MS By MS/MS 1 2 64.274 64.399 2 0.00076148 28392 20181213_JW_Orientia_Karp_1_1 157.58 100.53 4950500 3290600 1659900 0 0 0 0 0 0 1032 1811 903 6409;6410;6411 4201;4202 4201 2 DDFDHDSVPDIDDICPENVDISETDFR Unmodified 3179.3149 0.31494731 186 A0A024R9Q1;P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 72.572 72.683 3 8.1528E-08 26805 20181213_JW_Orientia_Karp_3_1 121.38 103.73 280070000 0 70208000 95170000 10745000 0 0 76260000 27685000 + 1033 186 904 6412;6413;6414;6415;6416 4203;4204;4205;4206;4207 4206 5 DDFTEFGK Unmodified 957.40798 0.40797689 120 A0A024R5S5;O75822-3;O75822;H0YGJ7;H0YLP3 EIF3S1;EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 48.896 49.247 2 0.008381 17044 20181213_JW_Orientia_Karp_2_1 109.01 56.329 28743000 0 7400100 3340400 7579900 2961700 6709300 0 751500 1034 120 905 6417;6418;6419;6420;6421;6422 4208;4209;4210;4211;4212 4210 5 DDFVELGVTR Unmodified 1149.5666 0.5666028 1967 Q9BYB0-3;Q9BYB0 SHANK3 SH3 and multiple ankyrin repeat domains protein 3 yes no 0 0 0 0 By MS/MS 1 58.735 58.934 2 0.039432 24374 20181213_JW_Orientia_Karp_1_3 85.355 47.051 0 0 0 0 0 0 0 0 0 1035 1967 906 6423 4213 4213 1 DDGLFSGDPNWFPK Unmodified 1593.71 0.70997257 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 73.912 73.944 2 1.2966E-34 33947 20181213_JW_Orientia_Karp_1_3 271.65 211.13 1423500000 524420000 312210000 362380000 17910000 110640000 22150000 73393000 440730 1036 1662 907 6424;6425;6426;6427;6428;6429;6430;6431 4214;4215;4216;4217;4218;4219;4220 4216 7 DDGLFSGDPNWFPK Deamidation (NQ) 1594.694 0.69398816 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 1 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 75.215 75.244 2 0.0011894 35238 20181213_JW_Orientia_Karp_1_2 143 74.37 54940000 27383000 5904100 13924000 5147800 2580800 0 0 0 1037 1662 907 6432;6433;6434;6435;6436 4221;4222 4221 1108 2 DDGTVIHFNNPK Unmodified 1355.647 0.64697839 1870 Q6PJ77;Q96K17;E9PL10;Q96K17-2 BTF3L4 Transcription factor BTF3;Transcription factor BTF3 homolog 4 yes no 0 0 0 0 By MS/MS 1 41.107 41.617 2 0.022197 12675 20181213_JW_Orientia_Karp_3_2 73.841 39.635 0 0 0 0 0 0 0 0 0 1038 1870 908 6437 4223 4223 1 DDIDLDALAAEIEGAGAAK Unmodified 1856.9004 0.90035212 1516 Q8N5A0;O60841;A0JLR8;Q05CQ1 EIF5B Eukaryotic translation initiation factor 5B yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 76.01 76.034 2 0.0016915 35731 20181213_JW_Orientia_Karp_1_2 146.59 106.86 7904400 6698800 0 0 1205600 0 0 0 0 1039 1516 909 6438;6439;6440 4224;4225 4225 2 DDIEQHFSK Unmodified 1117.504 0.50400254 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 32.776 33.126 2 0.00080184 9099 20181213_JW_Orientia_Karp_3_1 140.11 82.301 79867000 12239000 30203000 28427000 4392500 0 0 4605300 0 1040 1396 910 6441;6442;6443;6444;6445 4226;4227;4228;4229;4230;4231 4231 6 DDITGEPLIR Unmodified 1127.5823 0.58225287 943 F8W1A4;P54819-3;P54819-5;P54819-2;P54819;F8VY04;P54819-4;P54819-6 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 1 1 53.301 53.651 2 0.0083779 21279 20181213_JW_Orientia_Karp_1_2 96.331 39.05 10007000 0 10007000 0 0 0 0 0 0 1041 943 911 6446;6447 4232;4233 4232 2 DDKESVPISDTIIPAVPPPTDLR Unmodified 2474.2904 0.29043453 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-10;P02751-4;Q6N084;Q5CZ99 FN1;DKFZp686L11144;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 70.961 71.096 3 0.004769 32044 20181213_JW_Orientia_Karp_1_3 88.945 49.559 55419000 0 15810000 13200000 0 6344500 1950400 14768000 3345900 1042 85 912 6448;6449;6450;6451;6452;6453;6454 4234;4235;4236;4237;4238;4239 4235 6 DDLDVTELTNEDLLDQLVK Unmodified 2187.0794 0.079438698 222 A0A024RBE7;P42167;G5E972;A0A024RBH7;P42167-2;Q59G12;P42167-3;P42166;H0YJH7 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 77.164 77.156 2 7.0694E-24 36458 20181213_JW_Orientia_Karp_1_2 263.98 151.14 109940000 29884000 11031000 28816000 4398100 8036500 3121200 24651000 0 1043 222 913 6455;6456;6457;6458;6459;6460;6461 4240;4241;4242;4243;4244;4245 4242 6 DDLITDLLNEAK Unmodified 1358.6929 0.69292553 1659 Q53Y06;P36543-2;P36543;C9J8H1 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 0 0 0 0 By MS/MS By matching 1 1 76.654 76.658 2 0.0060174 36155 20181213_JW_Orientia_Karp_1_1 104.82 66.074 3207900 2879200 0 0 0 0 0 0 328690 1044 1659 914 6462;6463 4246 4246 1 DDNPNLPR Unmodified 939.44101 0.44100836 620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;Q8IUK7;H7C013 ALB Serum albumin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 33.525 33.927 2 0.0047891 10229 20181213_JW_Orientia_Karp_1_1 125.81 78.071 123710000 106750000 3390900 0 7673700 1806000 0 3676200 413160 + 1045 620 915 6464;6465;6466;6467;6468;6469 4247;4248;4249 4247 3 DDPHACYSTVFDK Unmodified 1553.6457 0.64565776 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 1 2 2 1 43.388 43.706 2;3 0.010605 13673 20181213_JW_Orientia_Karp_3_2 98.105 69.9 590710000 115000000 107260000 74212000 61986000 95498000 40199000 75415000 21145000 + 1046 792 916 6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483 4250;4251;4252;4253;4254 4254 5 DDPLTNLNTAFDVAEK Unmodified 1761.8421 0.84210896 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;Q86TX4;G3V2N5;B4DRP5;G3V2W4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 72.153 72.253 2 2.3576E-13 33122 20181213_JW_Orientia_Karp_1_2 198.48 146.72 128300000 71553000 46256000 0 10489000 0 0 0 0 1047 133 917 6484;6485;6486 4255 4255 1 DDPVTNLNNAFEVAEK Deamidation (NQ) 1775.8214 0.82137352 1509 O43707;B4E337;B4DSX0;K7EJH8 ACTN4 Alpha-actinin-4 yes no 0 1 0 0 By MS/MS By matching 1 1 63.128 63.303 2 0.019236 27605 20181213_JW_Orientia_Karp_1_1 94.717 59.194 20563000 10443000 10120000 0 0 0 0 0 0 1048 1509 918 6487;6488 4256 4256 1012 1 DDPVTNLNNAFEVAEK Unmodified 1774.8374 0.83735793 1509 O43707;B4E337;B4DSX0;K7EJH8 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS 1 65.475 65.885 2 2.62E-06 25322 20181213_JW_Orientia_Karp_3_2 168 105.2 3609400 0 0 0 0 0 0 0 3609400 1049 1509 918 6489 4257 4257 1 DDQLEEK Unmodified 875.38724 0.38724145 1077 Karp_00059 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 22.673 22.949 2 0.0062124 4790 20181213_JW_Orientia_Karp_3_1 159.2 42.946 24754000 4847700 9373400 0 3713100 2479400 2017200 2323000 0 1050 1077 919 6490;6491;6492;6493;6494;6495;6496 4258;4259;4260;4261;4262;4263 4262 6 DDSLSLLHSSSIR Unmodified 1428.7209 0.72087161 1404 Karp_02212 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 50.31 50.591 2;3 2.0158E-12 19541 20181213_JW_Orientia_Karp_1_1 209.8 141.43 974200000 238890000 173800000 146080000 188750000 58649000 114480000 53547000 0 1051 1404 920 6497;6498;6499;6500;6501;6502;6503;6504;6505;6506;6507;6508;6509 4264;4265;4266;4267;4268;4269 4264 6 DDSPDLPK Unmodified 885.40798 0.40797689 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 35.984 36.434 2 0.022405 10971 20181213_JW_Orientia_Karp_1_3 107.43 51.925 39382000 0 30198000 0 9184300 0 0 0 0 + 1052 792 921 6510;6511;6512;6513;6514;6515 4270;4271;4272;4273;4274 4272 5 DDTSFVLSPNSELFK Unmodified 1697.8148 0.81483158 1106 Karp_00284 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.684 72.77 2 5.586E-29 33487 20181213_JW_Orientia_Karp_1_2 240.8 136.75 746820000 201540000 117630000 182370000 45186000 67882000 0 96562000 35657000 1053 1106 922 6516;6517;6518;6519;6520;6521;6522;6523 4275;4276;4277;4278;4279;4280;4281 4276 7 DDWLIIK Unmodified 901.49092 0.49091866 1457 Karp_02594 yes yes 0 0 0 0 By matching By MS/MS 1 1 66.394 66.443 2 0.012698 28940 20181213_JW_Orientia_Karp_1_3 132.72 48.359 19992000 17737000 0 2254100 0 0 0 0 0 1054 1457 923 6524;6525 4282 4282 1 DEAHIYSK Unmodified 961.45051 0.45051041 1456 Karp_02593 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 22.302 22.668 2 0.004443 4479 20181213_JW_Orientia_Karp_2_1 131.03 68.924 86667000 18772000 36752000 0 7717000 6043100 4496300 8288600 4598200 1055 1456 924 6526;6527;6528;6529;6530;6531;6532 4283;4284;4285;4286;4287;4288;4289 4285 7 DEDEEDQLELR Unmodified 1389.5896 0.58958267 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 48.393 48.738 2 1.7214E-34 18124 20181213_JW_Orientia_Karp_1_1 261.03 204.4 419370000 114670000 137240000 87255000 37363000 9744300 14435000 345970 18318000 1056 1121 925 6533;6534;6535;6536;6537;6538;6539;6540 4290;4291;4292;4293;4294 4290 5 DEDFSPDGGYIPR Unmodified 1466.6314 0.6313879 1537 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 56.149 56.507 2 0.0009394 21062 20181213_JW_Orientia_Karp_2_2 142.43 100.08 25932000 2418700 2989300 5531800 3892200 6987600 3788900 155590 168240 1057 1537 926 6541;6542;6543;6544;6545;6546;6547;6548 4295;4296;4297 4296 3 DEEEDQTLVNLDTYTSDLHFQVSK Unmodified 2825.2879 0.28792792 994 H3BQZ7;Q1KMD3 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 71.142 71.243 3 0.0027581 32484 20181213_JW_Orientia_Karp_1_1 127.1 91.905 49999000 28341000 0 0 0 7833000 0 13825000 0 1058 994 927 6549;6550;6551 4298 4298 1 DEEEEEEEEK Unmodified 1293.4732 0.47321551 1928 Q9UEI6;Q92692-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 20.132 20.502 2 1.1465E-88 4120 20181213_JW_Orientia_Karp_1_2 328.66 276.18 8415500 3034700 1535800 1424200 693470 427020 396020 843350 61010 1059 1928 928 6552;6553;6554;6555;6556;6557;6558;6559 4299;4300;4301;4302;4303;4304;4305;4306 4300 8 DEEFPEQK Unmodified 1020.44 0.4400053 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13;B4DKC9;B4DTM7 VCL;HEL114 Vinculin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 33.878 34.24 2 0.0041521 9898 20181213_JW_Orientia_Karp_1_2 148.04 57.266 41601000 15704000 9412900 8613600 0 0 0 5888100 1982800 1060 19 929 6560;6561;6562;6563;6564 4307 4307 1 DEEINQQSQLVEK Unmodified 1558.7475 0.74748029 834 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1VPF7;M1VRN0;M1VKI9;M1VE89;M1V481 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12;KIF5B-ALK_K17;A20 Kinesin-like protein;Kinesin-1 heavy chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 40.435 40.777 2 4.6849E-17 13123 20181213_JW_Orientia_Karp_1_3 223.31 137.3 23841000 9280000 4220700 7088200 0 0 0 1941300 1311400 1061 834 930 6565;6566;6567;6568;6569;6570 4308;4309;4310;4311 4310 4 DEEVHAGLGELLR Unmodified 1436.726 0.72595699 115 A0A024R5K8;P50454;E9PJH8;E9PIG2;E9PRS3;E9PNX1;E9PK86;E9PMI5;E9PR70;E9PPV6;E9PQ34 SERPINH1 Serpin H1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.657 53.923 3 5.6546E-05 19814 20181213_JW_Orientia_Karp_2_3 162.93 66.169 94388000 21034000 19693000 8425600 12025000 13651000 19559000 0 0 1062 115 931 6571;6572;6573;6574;6575;6576 4312;4313;4314;4315;4316;4317;4318 4318 7 DEFEGLFK Unmodified 983.46001 0.46001246 42 A0A024R1A3;P22314-2;P22314;B4DDE4;B4DL67;Q5JRR6;B3KUJ2 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 62.314 62.314 2 0.0041682 27108 20181213_JW_Orientia_Karp_1_1 145.04 67.122 26139000 26139000 0 0 0 0 0 0 0 1063 42 932 6577;6578 4319;4320 4319 2 DEFLIQASPR Unmodified 1174.5982 0.59823728 1696 P51149;C9J592;B4DPH9 RAB7A Ras-related protein Rab-7a yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.996 55.322 2 0.00012885 22014 20181213_JW_Orientia_Karp_1_3 147.73 69.468 68215000 15655000 13929000 26269000 4504000 0 7635100 0 222460 1064 1696 933 6579;6580;6581;6582;6583;6584 4321;4322;4323;4324 4321 4 DEFYNEVDK Unmodified 1157.4877 0.48768378 1428 Karp_02381 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 44.004 44.317 2 0.012127 14540 20181213_JW_Orientia_Karp_3_1 89.886 47.017 24639000 8242600 8242800 0 0 0 2489800 5663500 0 1065 1428 934 6585;6586;6587;6588 4325 4325 1 DEGNYLDDALVR Unmodified 1378.6365 0.63647328 554 Q6P452;B4DDZ4;V9HW59;Q6LES2;P09525;Q59FK3;B4DE02;P09525-2 ANXA4;HEL-S-274 Annexin;Annexin A4 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 59.827 60.127 2 1.7192E-05 23255 20181213_JW_Orientia_Karp_2_3 175.65 74.186 21061000 0 6420500 4757800 3022200 2201700 4658300 0 0 1066 554 935 6589;6590;6591;6592;6593 4326;4327;4328 4328 3 DEGVELFAIGIK Unmodified 1289.6867 0.68671794 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y4P7 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS 1 73.213 73.213 2 0.014995 33765 20181213_JW_Orientia_Karp_1_1 105.98 70.434 0 0 0 0 0 0 0 0 0 1067 852 936 6594 4329 4329 1 DEIVEIHEENEVASGTQSGGTEAEAVPAQK Unmodified 3123.448 0.44801039 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 48.608 48.901 3 7.6592E-06 16992 20181213_JW_Orientia_Karp_2_1 93.667 69.315 38669000 8955000 0 9083400 5315600 6040500 4267800 0 5006900 1068 1764 937 6595;6596;6597;6598;6599;6600 4330;4331;4332;4333;4334 4331 5 DELADEIANSSGK Unmodified 1347.6154 0.61540349 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 47.225 47.598 2 3.7252E-25 17402 20181213_JW_Orientia_Karp_1_1 236.69 167.85 276950000 86443000 88723000 55181000 12219000 0 14522000 2342000 17516000 1069 47 938 6601;6602;6603;6604;6605;6606;6607 4335;4336;4337;4338;4339 4335 5 DELADEIANSSGK Deamidation (NQ) 1348.5994 0.59941907 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 1 0 0 By matching By matching By MS/MS By matching 1 1 1 1 46.654 46.904 2 0.022432 16670 20181213_JW_Orientia_Karp_1_3 95.477 40.107 31058000 10832000 9836100 9590900 798630 0 0 0 0 1070 47 938 6608;6609;6610;6611 4340 4340 14 1 DELHIVEAEAMNYEGSPIK Oxidation (M) 2160.0045 0.0044996155 1562 P06748-2;P06748;A4ZU86;P06748-3 NPM1 Nucleophosmin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 58.846 59.133 2;3 9.3453E-18 24354 20181213_JW_Orientia_Karp_1_3 205.88 141.96 424810000 103460000 74180000 66181000 34153000 66222000 66546000 0 14070000 1071 1562 939 6612;6613;6614;6615;6616;6617;6618;6619;6620;6621;6622;6623;6624;6625 4341;4342;4343;4344;4345;4346;4347;4348;4349 4345 1178 9 DELHIVEAEAMNYEGSPIK Unmodified 2144.0096 0.0095849934 1562 P06748-2;P06748;A4ZU86;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.832 63.091 3 5.0281E-05 27320 20181213_JW_Orientia_Karp_1_2 204.23 118.95 259930000 80721000 16678000 94510000 5244300 35288000 19476000 0 8012400 1072 1562 939 6626;6627;6628;6629;6630;6631;6632 4350;4351;4352;4353;4354;4355;4356;4357 4352 8 DELLQVLR Unmodified 984.5604 0.56039521 184 A0A024R9M9;Q99653 CHP;CHP1 Calcineurin B homologous protein 1 yes no 0 0 0 0 By MS/MS 1 61.099 61.35 2 0.008803 23875 20181213_JW_Orientia_Karp_2_3 107.66 41.314 3169300 0 0 0 0 0 3169300 0 0 1073 184 940 6633 4358 4358 1 DELMEIVDFLR Oxidation (M) 1394.6752 0.67516697 1458 Karp_02603 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 76.276 76.271 2 3.4075E-18 35491 20181213_JW_Orientia_Karp_1_3 227.99 165.52 67122000 18738000 11800000 15309000 5378300 3498700 4442800 6929300 1026100 1074 1458 941 6634;6635;6636;6637;6638;6639;6640;6641 4359;4360;4361;4362;4363;4364;4365 4361 1072 7 DELTDLDQSNVTEETPEGEEHHPVADTENK Unmodified 3377.4655 0.46551095 832 Q63HR1;Q5VU21;D3DQ69;Q8NC51-4;Q8NC51-3 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 46.188 46.585 3;4 2.3058E-05 15523 20181213_JW_Orientia_Karp_2_1 86.131 61.513 161230000 0 24234000 33291000 26145000 28057000 30075000 7809200 11617000 1075 832 942 6642;6643;6644;6645;6646;6647;6648;6649;6650;6651 4366;4367;4368;4369;4370 4367 5 DEQIILIESFPPIR Unmodified 1668.9087 0.90867238 1063 Karp_00007 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 75.03 75.059 2 1.0016E-07 35046 20181213_JW_Orientia_Karp_1_2 187.44 125.03 149650000 58358000 29801000 31093000 6347000 0 9139100 14557000 351650 1076 1063 943 6652;6653;6654;6655;6656;6657;6658 4371;4372;4373;4374;4375;4376;4377;4378 4373 8 DEQMVFDSLR Unmodified 1238.5601 0.56013721 1123 Karp_00323 yes yes 0 0 0 0 By MS/MS 1 59.502 59.502 2 0.019556 25317 20181213_JW_Orientia_Karp_1_1 96.229 35.974 0 0 0 0 0 0 0 0 0 1077 1123 944 6659 4379 4379 1 DEQTQQTTMNK Oxidation (M) 1338.5722 0.57215846 1067 Karp_00016 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 14.989 15.381 2 8.8724E-73 2575 20181213_JW_Orientia_Karp_1_1 310.49 203.61 85442000 10566000 7542000 12237000 7358400 12772000 4281000 5621900 25064000 1078 1067 945 6660;6661;6662;6663;6664;6665;6666;6667;6668;6669;6670;6671;6672;6673;6674 4380;4381;4382;4383;4384;4385;4386;4387;4388;4389 4380 586 10 DEQTQQTTMNK Unmodified 1322.5772 0.57724384 1067 Karp_00016 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.53 21.875 2 3.983E-89 4472 20181213_JW_Orientia_Karp_1_2 326.07 216.63 28513000 4289400 4091400 8622100 2216400 1611700 2551200 2989000 2141700 1079 1067 945 6675;6676;6677;6678;6679;6680;6681;6682 4390;4391;4392;4393;4394;4395;4396;4397 4391 8 DESSPYAAMLAAQDVAQR Oxidation (M) 1937.8789 0.87890517 1729 P62263;H0YB22;E5RH77 RPS14 40S ribosomal protein S14 yes no 0 0 1 0 By matching By MS/MS By MS/MS 1 1 1 53.83 54.23 2 0.0001904 19771 20181213_JW_Orientia_Karp_2_2 132.31 58.874 6892600 0 0 0 3299500 3593100 0 0 0 1080 1729 946 6683;6684;6685 4398;4399 4398 1358 2 DEVLYVFPSDFCR Unmodified 1645.7446 0.74464352 260 A0A024RDG6;Q14108;Q14108-2 SCARB2 Lysosome membrane protein 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 73.167 73.225 2 0.02414 27120 20181213_JW_Orientia_Karp_3_1 83.397 49.511 63976000 16097000 7755200 10770000 0 4381900 3908100 16492000 4571600 1081 260 947 6686;6687;6688;6689;6690;6691;6692 4400;4401 4401 2 DEVVVQNWMTK Unmodified 1347.6493 0.64928657 1418 Karp_02255 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 57.235 57.6 2 0.0045786 23477 20181213_JW_Orientia_Karp_1_3 116.23 44.732 21886000 9670600 0 9843300 0 0 0 175730 2196600 1082 1418 948 6693;6694;6695;6696 4402 4402 1 DFAISDIK Unmodified 907.4651 0.46509784 1361 Karp_01814 yes yes 0 0 0 0 By MS/MS 1 54.16 54.16 2 0.024176 21959 20181213_JW_Orientia_Karp_1_1 104.06 32.761 0 0 0 0 0 0 0 0 0 1083 1361 949 6697 4403 4403 1 DFALSGYSQVK Unmodified 1213.5979 0.59790293 1407 Karp_02223 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.327 53.537 2 0.0002531 20941 20181213_JW_Orientia_Karp_1_3 152.54 79.306 102180000 20004000 29410000 29713000 0 9053300 13995000 0 0 1084 1407 950 6698;6699;6700;6701;6702;6703 4404;4405;4406;4407;4408;4409 4406 6 DFATVYVEAIK Unmodified 1254.6496 0.64960415 800 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 65.23 65.28 2 2.5889E-09 28935 20181213_JW_Orientia_Karp_1_1 202.44 143.63 51170000 30708000 0 20463000 0 0 0 0 0 + 1085 800 951 6704;6705 4410;4411 4410 2 DFCDNYLELVK Unmodified 1414.6439 0.64386684 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.69 68.869 2 7.6387E-06 30814 20181213_JW_Orientia_Karp_1_2 179.42 112.85 23252000 3276800 3832000 4673000 1878900 2740500 2025800 4824600 0 1086 1149 952 6706;6707;6708;6709;6710;6711;6712 4412;4413;4414;4415;4416;4417;4418 4413 7 DFEQPLAISR Unmodified 1174.5982 0.59823728 1487 V9HW92;O00151 HEL-S-112;PDLIM1 PDZ and LIM domain protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 56.153 56.419 2 0.003384 22992 20181213_JW_Orientia_Karp_1_2 108.43 47.75 129670000 24682000 10955000 20176000 26887000 20436000 26529000 0 0 1087 1487 953 6713;6714;6715;6716;6717;6718 4419;4420 4420 2 DFETIGQNK Unmodified 1050.4982 0.49818889 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-5;Q9NZM1-7;Q9NZM1-4;Q9NZM1-8 MYOF Myoferlin yes no 0 0 0 0 By MS/MS 1 40.242 40.242 2 0.024226 13531 20181213_JW_Orientia_Karp_1_1 81.548 24.738 6011600 6011600 0 0 0 0 0 0 0 1088 1991 954 6719 4421 4421 1 DFFAENLFK Unmodified 1129.5444 0.5444108 1167 Karp_00621 yes yes 0 0 0 0 By MS/MS By MS/MS 1 2 72.659 72.708 2 0.011993 33465 20181213_JW_Orientia_Karp_1_1 89.698 34.022 18476000 15778000 0 2698200 0 0 0 0 0 1089 1167 955 6720;6721;6722 4422;4423 4422 2 DFFQSYGNVVELR Unmodified 1572.7573 0.75725712 1790 Q6FI03;Q5U0Q1;Q53HH4;Q13283;B7Z8K4;Q6ZP53;Q32P45 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 70.584 70.714 2 1.4247E-11 32131 20181213_JW_Orientia_Karp_1_1 205.12 127.01 61954000 16899000 15598000 13219000 0 3528200 1545000 10189000 975910 1090 1790 956 6723;6724;6725;6726;6727;6728;6729 4424;4425 4424 2 DFGIDIPNIPQQQAQAAQPQLNDEQR Unmodified 2933.4268 0.42676186 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 5 2 3 3 5 4 72.042 72.127 2;3;4 1.1096E-25 28811 20181213_JW_Orientia_Karp_2_3 192.16 146.42 51222000000 14589000000 3720600000 8660500000 4225000000 5420400000 5607700000 8916600000 81920000 1091 1371 957 6730;6731;6732;6733;6734;6735;6736;6737;6738;6739;6740;6741;6742;6743;6744;6745;6746;6747;6748;6749;6750;6751;6752;6753;6754;6755;6756;6757;6758;6759;6760 4426;4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437;4438;4439;4440;4441;4442;4443;4444;4445 4441 20 DFGIDIPNIPQQQAQAAQPQLNDEQR Deamidation (NQ) 2934.4108 0.41077745 1371 Karp_02001 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 5 5 5 5 5 72.589 72.66 2;3 1.5857E-33 29530 20181213_JW_Orientia_Karp_2_3 206.99 164.05 30180000000 5530900000 2766400000 7413100000 691150000 3498300000 2703900000 5643300000 1932600000 1092 1371 957 6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6776;6777;6778;6779;6780;6781;6782;6783;6784;6785;6786;6787;6788;6789;6790;6791;6792;6793;6794 4446;4447;4448;4449;4450;4451;4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462 4455 836;1846;1847 16 DFHVDEQTTVK Unmodified 1317.6201 0.62009493 803 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 36.687 37.072 3 4.9583E-06 10948 20181213_JW_Orientia_Karp_3_1 174.57 133.46 24990000 0 0 0 0 10922000 2571500 11496000 0 + 1093 803 958 6795;6796;6797 4463;4464;4465 4465 3 DFHVHCYR Unmodified 1132.4872 0.48724704 730 B7Z871;B7ZLW0;Q93052;B7Z8W0 LPP Lipoma-preferred partner yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 25.353 25.869 3 0.034422 5034 20181213_JW_Orientia_Karp_3_2 54.611 39.712 3205500 0 0 0 0 977590 429850 1126000 671990 1094 730 959 6798;6799;6800;6801 4466 4466 1 DFINNVVEK Unmodified 1076.5502 0.55022446 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 51.917 52.092 2 0.0017546 20567 20181213_JW_Orientia_Karp_1_1 120.99 52.202 9382100 3267500 6114600 0 0 0 0 0 0 1095 1270 960 6802;6803 4467;4468 4467 2 DFIVSIAAILK Unmodified 1188.7118 0.71181048 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS 1 76.519 76.469 2 0.00045922 28886 20181213_JW_Orientia_Karp_3_1 143.03 87.664 4854800 0 0 0 0 0 0 4854800 0 1096 1396 961 6804 4469 4469 1 DFKEDNDDIVGIISSINAESSDQVTSNNANAQQAEYVDVK 2 Deamidation (NQ) 4343.9677 0.96772258 1108 Karp_00286 yes yes 0 2 0 1 By MS/MS 1 73.762 73.76 3 0.019157 33868 20181213_JW_Orientia_Karp_1_3 54.634 30.878 7350400 0 0 7350400 0 0 0 0 0 1097 1108 962 6805 4470;4471 4471 482;483;484;485;1806;1807 2 DFKPGDLIFAK Unmodified 1249.6707 0.67067394 1523 O75475-3;O75475-2;O75475;Q05CM9;Q8N4N4 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 59.668 59.978 3 0.0031423 25050 20181213_JW_Orientia_Karp_1_3 141.91 54.104 35908000 21780000 3952700 3081500 309900 0 0 6784200 0 1098 1523 963 6806;6807;6808;6809;6810 4472;4473 4473 2 DFLAGGIAAAISK Unmodified 1232.6765 0.6764876 1023 I7HJJ0;Q6I9V5;P12236;Q59EI9 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.713 68.921 2 0.00050719 30554 20181213_JW_Orientia_Karp_1_3 187.31 122.15 76816000 19383000 15031000 15149000 1188400 4173700 5315200 13246000 3329900 1099 1023 964 6811;6812;6813;6814;6815;6816;6817;6818 4474;4475;4476;4477;4478 4476 4 DFLAGGVAAAISK Unmodified 1218.6608 0.66083754 1557 P05141;Q6NVC0 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.609 63.785 2 9.5952E-05 27709 20181213_JW_Orientia_Karp_1_2 164.48 114.44 81772000 26782000 10767000 32718000 0 3756400 3762000 0 3986200 1100 1557 965 6819;6820;6821;6822;6823;6824;6825 4479;4480;4481;4482;4483;4484;4485 4480 7 DFLDGVYAFEYYPSTPGR Unmodified 2095.9527 0.95272204 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 75.599 75.598 2 0.00014924 35015 20181213_JW_Orientia_Karp_1_3 182.72 127 101910000 36697000 0 49180000 2574400 2876600 2333700 8252900 0 1101 1520 966 6826;6827;6828;6829;6830;6831 4486;4487;4488;4489 4487 4 DFLISDDFSK Unmodified 1185.5554 0.55536941 1067 Karp_00016 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 66.261 66.462 2 0.0076884 23332 20181213_JW_Orientia_Karp_3_1 96.034 59.477 54440000 10695000 11127000 14718000 0 6429600 5966500 860630 4643400 1102 1067 967 6832;6833;6834;6835;6836;6837;6838 4490;4491;4492;4493;4494 4493 5 DFLLTAR Unmodified 834.45995 0.45995289 167 J3KT73;J3QL01;A0A024R8P8;P63173;J3KSP2 RPL38 60S ribosomal protein L38 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 55.27 55.536 2 0.012793 20477 20181213_JW_Orientia_Karp_2_2 133.81 68.009 98072000 21708000 8717300 24807000 811390 9329300 32699000 0 0 1103 167 968 6839;6840;6841;6842;6843;6844;6845;6846 4495;4496;4497;4498;4499;4500 4499 6 DFLNCINIDK Unmodified 1250.5965 0.59652272 1348 Karp_01524 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 62.386 62.646 2 0.00024966 27275 20181213_JW_Orientia_Karp_1_1 143.4 64.881 18224000 5384000 0 6873000 281300 3286200 2005400 0 394240 1104 1348 969 6847;6848;6849;6850;6851;6852 4501;4502;4503 4501 3 DFNVPLSISR Unmodified 1146.6033 0.60332266 1984 Q9NR12;Q9NR12-2;D6RH06;Q9NR12-5;Q9NR12-6;Q9NR12-4;D6RF83;H7BYK4;Q9NR12-3;D6RAN1 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 63.648 63.825 2 0.040648 28013 20181213_JW_Orientia_Karp_1_1 72.2 19.034 44417000 12211000 2884700 24349000 0 1961900 2070900 0 939580 1105 1984 970 6853;6854;6855;6856;6857;6858 4504 4504 1 DFPDVISGAYIIEVIPDTPAEAGGLK Unmodified 2686.3742 0.37416416 522 Q05DJ8;B3KRN4;Q92743;H0Y7G9;A8K224 HTRA1 Serine protease HTRA1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 77.871 77.87 3 0.028396 36740 20181213_JW_Orientia_Karp_1_1 41.672 14.617 15250000 4637400 3719900 3233500 0 0 0 3659700 0 1106 522 971 6859;6860;6861;6862 4505;4506;4507 4505 3 DFPQQALPLQREMK 2 Deamidation (NQ) 1701.8396 0.83960654 1998 Q9UDY6-2;Q9UDY6 TRIM10 Tripartite motif-containing protein 10 yes no 0 2 0 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 33.314 33.687 3 0.042693 8627 20181213_JW_Orientia_Karp_2_2 45.115 11.333 678650000 190770000 182640000 209240000 37890000 28566000 0 25685000 3866100 1107 1998 972 6863;6864;6865;6866;6867;6868;6869 4508 4508 2102;2103;2104 0 DFQPVLHLVALNSPLSGGMR Oxidation (M) 2166.1256 0.12555822 835 D3DSM4;D3DSM5;P39060-2;P39060-1;P39060;H7BXV5;H7C457;Q8NG19 COL18A1 Collagen alpha-1(XVIII) chain;Endostatin yes no 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 71.641 71.723 3 0.0029288 32824 20181213_JW_Orientia_Karp_1_1 99.011 68.055 38626000 23491000 0 12923000 2212600 0 0 0 0 1108 835 973 6870;6871;6872 4509;4510 4509 478 2 DFQQLIEER Unmodified 1176.5775 0.57750184 1289 Karp_01161 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 2 57.92 58.196 2 0.00078672 24552 20181213_JW_Orientia_Karp_1_1 144.65 62.371 98447000 21782000 22918000 22464000 0 9253900 15397000 0 6632000 1109 1289 974 6873;6874;6875;6876;6877;6878;6879;6880;6881 4511;4512;4513;4514;4515 4511 5 DFSALESQLQDTQELLQEENR Unmodified 2492.1667 0.16669058 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 74.396 74.425 2;3 0 34227 20181213_JW_Orientia_Karp_1_3 453.54 357.31 1255300000 509180000 269550000 344650000 7328300 35732000 4358700 76285000 8250600 1110 47 975 6882;6883;6884;6885;6886;6887;6888;6889;6890;6891;6892;6893 4516;4517;4518;4519;4520;4521;4522;4523;4524 4518 9 DFSALESQLQDTQELLQEENR Deamidation (NQ) 2493.1507 0.15070616 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 1 0 0 By matching By matching By MS/MS 1 1 1 74.835 74.867 3 0.024627 27923 20181213_JW_Orientia_Karp_3_1 71.001 52.755 21107000 0 2540900 13298000 0 0 0 5267300 0 1111 47 975 6894;6895;6896 4525 4525 15 1 DFSAPLTISR Unmodified 1105.5768 0.57677356 1692 P50479;P50479-2 PDLIM4 PDZ and LIM domain protein 4 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 58.329 58.589 2 0.0031827 22151 20181213_JW_Orientia_Karp_2_2 109.44 59.724 34279000 11903000 5384200 6318700 0 2955700 6523700 0 1193500 1112 1692 976 6897;6898;6899;6900;6901;6902 4526 4526 1 DFSFTFIELPK Unmodified 1342.6809 0.68090428 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 2 2 2 2 1 75.606 75.618 2 2.3358E-34 35141 20181213_JW_Orientia_Karp_1_3 257.27 186.45 2974900000 870650000 420180000 334050000 156650000 412230000 234740000 509000000 37444000 1113 1068;1081;1083;1086;1151;1356 977 6903;6904;6905;6906;6907;6908;6909;6910;6911;6912;6913;6914;6915 4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538 4531 12 DFSISTAAILQNIGYK Unmodified 1739.9094 0.90940066 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 74.502 74.534 2 1.9467E-37 27700 20181213_JW_Orientia_Karp_3_1 295.26 210.66 366550000 114630000 75769000 84294000 7190900 17290000 13683000 48391000 5307900 1114 1395 978 6916;6917;6918;6919;6920;6921;6922;6923 4539;4540;4541;4542;4543;4544;4545 4545 7 DFSLEQLR Unmodified 1006.5084 0.50835964 1502 O15173;O15173-2 PGRMC2 Membrane-associated progesterone receptor component 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 57.979 58.242 2 0.004196 24573 20181213_JW_Orientia_Karp_1_1 139.88 42.807 39162000 23249000 0 7450400 0 2386300 3827100 0 2249500 1115 1502 979 6924;6925;6926;6927;6928;6929 4546;4547;4548;4549;4550 4546 5 DFTPVCTTELGR Unmodified 1394.65 0.65001485 1644 V9HWC7;P30041 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.805 55.147 2 0.0012443 22569 20181213_JW_Orientia_Karp_1_1 130.98 86.119 37945000 7862500 12957000 0 4112800 7856400 4279100 877170 0 1116 1644 980 6930;6931;6932;6933;6934;6935 4551;4552;4553 4551 3 DFTSLENTVEER Unmodified 1438.6576 0.65760265 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 56.56 56.902 2 0.0020615 22967 20181213_JW_Orientia_Karp_1_3 161.19 98.006 55201000 16745000 15265000 18786000 3471400 0 0 0 932220 1117 224 981 6936;6937;6938;6939;6940 4554 4554 0 DFTVSAMHGDMDQK 2 Oxidation (M) 1612.6498 0.64975686 387 A8K7F6;P60842;J3KT12;A8K088;P60842-2;J3KSZ0;B4DNH2;J3QL52 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 2 0 By matching By MS/MS By matching 1 1 1 31.997 32.297 3 0.039819 8975 20181213_JW_Orientia_Karp_1_2 45.28 13.933 11760000 5878100 5700800 0 181490 0 0 0 0 1118 387 982 6941;6942;6943 4555 4555 0 DFVAEPMGEK Unmodified 1121.5063 0.50631073 112 A0A024R5H0;O75531;E9PJJ8 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 0 0 By MS/MS 1 47.522 47.522 2 0.029483 17509 20181213_JW_Orientia_Karp_1_1 78.334 47.105 26807000 26807000 0 0 0 0 0 0 0 1119 112 983 6944 4556 4556 1 DFVAEPMGEK Oxidation (M) 1137.5012 0.50122535 112 A0A024R5H0;O75531;E9PJJ8 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 39.408 39.81 2 0.0099762 12123 20181213_JW_Orientia_Karp_2_1 89.698 43.236 57435000 0 26029000 17811000 1761800 1970600 0 8419300 1442300 1120 112 983 6945;6946;6947;6948;6949;6950 4557;4558;4559 4558 106 3 DFVAEPMGEKPVGSLAGIGEVLGK Oxidation (M) 2415.2356 0.23556218 112 A0A024R5H0;O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 1 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.252 65.459 3 0.00055552 29029 20181213_JW_Orientia_Karp_1_1 109.84 80.96 253340000 35619000 47499000 41773000 4508400 29374000 16752000 77814000 0 1121 112 984 6951;6952;6953;6954;6955;6956;6957 4560;4561;4562;4563;4564;4565 4560 106 6 DFVAEPMGEKPVGSLAGIGEVLGK Unmodified 2399.2406 0.24064756 112 A0A024R5H0;O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 69.101 69.246 3 3.7588E-07 31175 20181213_JW_Orientia_Karp_1_2 137.64 115.6 164900000 43326000 23752000 28125000 0 7324100 6069600 37081000 19224000 1122 112 984 6958;6959;6960;6961;6962;6963;6964 4566;4567;4568;4569;4570;4571 4567 6 DFVNYLVR Unmodified 1024.5342 0.53418046 1777 Q08211;Q58F26;Q6PJK6 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 By MS/MS By MS/MS 1 1 62.17 62.425 2 0.0041521 27152 20181213_JW_Orientia_Karp_1_1 148.04 93.838 25144000 24344000 0 0 0 0 0 0 799510 1123 1777 985 6965;6966 4572;4573 4572 2 DFVTYVDNEWK Unmodified 1414.6405 0.64049603 1290 Karp_01163 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 65.625 65.815 2 1.7515E-09 28872 20181213_JW_Orientia_Karp_1_2 200.71 106.41 36978000 9201200 9673700 8914700 0 0 2212600 6975600 0 1124 1290 986 6967;6968;6969;6970;6971 4574;4575;4576;4577 4575 4 DFWNNEAR Unmodified 1050.4519 0.45190739 1063 Karp_00007 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 47.458 47.746 2 0.017742 17247 20181213_JW_Orientia_Karp_1_2 91.318 48.195 17549000 5021900 8261700 0 2584500 0 1681300 0 0 1125 1063 987 6972;6973;6974;6975 4578;4579 4578 2 DGAGDVAFVK Unmodified 977.48181 0.48181054 578 B4DI57;Q53H26;Q06AH7;P02787;B4E1B2;C9JVG0;A0PJA6 TF Serotransferrin yes no 0 0 0 0 By MS/MS 1 45.92 45.92 2 0.017067 16541 20181213_JW_Orientia_Karp_1_1 103.55 36.747 0 0 0 0 0 0 0 0 0 1126 578 988 6976 4580 4580 1 DGDGTITTK Unmodified 906.42944 0.42944062 497 Q9BRL5;B4DJ51;B2RDW0;H0Y7A7;P62158;E7ETZ0;E7EMB3;A8K1M2;F8WBR5;M0QZ52;G3V479 CALM3;CALM2;CALM1 Calmodulin yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 22.848 23.216 2 9.4637E-06 4699 20181213_JW_Orientia_Karp_2_1 195.32 96.185 35714000 4885800 8147000 0 9680000 5894400 0 4412200 2694300 1127 497 989 6977;6978;6979;6980;6981;6982;6983 4581;4582;4583;4584;4585;4586;4587 4582 7 DGEDQTQDTELVETRPAGDGTFQK Unmodified 2636.1838 0.1837972 268;267;709;857;1906;915;933;861 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HLA-A;HLA;HLA-B;HLA-A24AK;HLA-C;HLA-Cw;MHC class I HLA-A;HLA-A*0226;HLA-A*02;HLA A;HLA-A*31;HLA-A*33;HLA-A*0201V3;HLA-DQB1 HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-23 alpha chain;HLA class I histocompatibility antigen, A-24 alpha chain;HLA class I histocompatibility antigen, A-80 alpha chain;Beta-2-microglobulin;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-29 alpha chain;HLA class I histocompatibility antigen, A-43 alpha chain;HLA class I histocompatibility antigen, A-26 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain no no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 1 1 47.102 47.398 3 3.4861E-14 15716 20181213_JW_Orientia_Karp_2_2 167.97 0 387450000 85537000 78586000 137810000 11540000 18153000 18733000 10506000 26586000 1128 268;915;933;267;709;857;1906;861 990 6984;6985;6986;6987;6988;6989;6990;6991;6992;6993;6994 4588;4589;4590;4591;4592;4593;4594 4591 7 DGEDQTQDTELVETRPAGDR Unmodified 2230.9938 0.99381159 2066;741;2063;858 B8XPR9;R9USF5;G1UK08;E9RKA5;T2MJP9;R7RTM7;R4U4H5;R4KW00;Q8SNC9;Q5XNP8;Q06BD1;N0BQN4;L0BUI6;G4V4C1;F8LFN9;F8LFN8;F8LFN6;E9RKA8;D7GM42;C5J3R3;A3F718;Q9GJF1;F4YTD8;B1GYE9;R4ZGR8;F4NC13;F4NBT6;U6BR57;U6BN72;U6BN38;F4NBT0;F4NBS9;F4NBS8;F4NBS7;F4NBS6;F4NBS5;F4NBS4;F4NBS3;F4NBS2;F4NBS1;Q2A133;O19589;Q29934;Q29700;V9HVZ9;S6FM58;S6FC63;Q7YQB0;Q546J0;Q3BK34;P79612;O78189;C7EXL9;C5MK52;C5MK50;C5IUS6;P03989;Q6J4L1;K4N0X3;I7HFK0;I0DFJ4;C7C3M7;B2DFX1;F4YTD9;U6BR60;S4VE60;Q1M2R9;W6JM27;Q8MGY9;Q861D3;Q861D2;Q861D1;Q861D0;Q861C9;Q861C8;Q861C7;C9E311;B4XKD1;Q8MHM7;Q5QR51;Q5QR50;Q5QR49;Q5QR38;D9UB12;S5LQY8;X2L7S8;Q29945;Q29947 HLA-B;HLA-B*27;HEL-S-83;HLA-A HLA class I histocompatibility antigen, B-27 alpha chain no no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.889 40.249 3 0.0086973 12873 20181213_JW_Orientia_Karp_1_3 89.484 65.827 55242000 15561000 9712600 14525000 3869000 0 0 9901400 1672000 1129 741;858;2063;2066 991 6995;6996;6997;6998;6999;7000 4595 4595 1 DGEEAGAYDGPR Unmodified 1235.5055 0.50545911 516;999 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98;H7BZJ3 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 no no 0 0 0 0 By MS/MS By matching 1 1 33.196 33.471 2 0.0070768 9997 20181213_JW_Orientia_Karp_1_1 102.52 43.543 6921100 6031000 0 0 890130 0 0 0 0 1130 516;999 992 7001;7002 4596 4596 1 DGELPVEDDIDLSDVELDDLGK Unmodified 2400.1068 0.10677566 1802 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 75.586 75.586 2 1.4013E-38 28345 20181213_JW_Orientia_Karp_3_1 231.17 198.54 74175000 48941000 0 0 0 0 3935000 21299000 0 1131 1802 993 7003;7004;7005 4597;4598;4599 4599 3 DGFIDLMELK Unmodified 1179.5846 0.58456105 12 A0A024QZ77;Q96C19;H0Y4Y4;Q53SA2;Q7Z2R5;B4DEE0;A0A024R493;Q59EU6;Q9BUP0-2;Q9BUP0 EFHD2;FLJ13612;MST133;EFHD1 EF-hand domain-containing protein D2;EF-hand domain-containing protein D1 yes no 0 0 0 0 By MS/MS By matching 1 1 74.59 74.614 2 0.0074424 34706 20181213_JW_Orientia_Karp_1_1 98.048 29.825 9449900 6583400 2866500 0 0 0 0 0 0 1132 12 994 7006;7007 4600 4600 1 DGFYYDFAR Unmodified 1152.4876 0.4876242 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1 1 61.242 61.516 2 0.0027687 26281 20181213_JW_Orientia_Karp_1_2 120.87 74.407 40357000 16350000 6345700 5818700 1208400 4978800 4301100 0 1353900 1133 1376 995 7008;7009;7010;7011;7012;7013;7014;7015 4601;4602;4603 4602 3 DGGAWGTEQR Unmodified 1075.4683 0.46828574 1576 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 32.274 32.631 2 2.4091E-05 8743 20181213_JW_Orientia_Karp_2_3 161.27 92.092 97602000 26234000 30321000 12068000 5874700 7266500 4932900 8068700 2836300 1134 1576 996 7016;7017;7018;7019;7020;7021;7022;7023 4604;4605;4606;4607 4606 4 DGGFDLSDALPDNENK Unmodified 1705.7431 0.7431232 1004 H7C2F2 CD99 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 64.366 64.535 2 0.0020446 28382 20181213_JW_Orientia_Karp_1_1 117.03 68.938 44562000 14391000 10016000 12663000 1249400 6242200 0 0 0 1135 1004 997 7024;7025;7026;7027;7028 4608 4608 1 DGIELIK Unmodified 786.44872 0.4487195 1456 Karp_02593 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 50.932 51.162 2 0.0094346 19339 20181213_JW_Orientia_Karp_1_3 148.33 0.25339 52685000 7587800 0 3806700 26195000 3276400 11819000 0 0 1136 1456 998 7029;7030;7031;7032;7033;7034 4609;4610;4611;4612 4610 4 DGLAFNALIHR Unmodified 1225.6568 0.65675521 1509 O43707;B4E337;B4DSX0;Q71S06;M0QZQ3;E9PDB1;A0A024R0N6;Q9H254-2;Q9H254-4;Q9H254 ACTN4;SPTBN4 Alpha-actinin-4;Spectrin beta chain, non-erythrocytic 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 56.678 56.804 3 0.0031143 23739 20181213_JW_Orientia_Karp_1_1 126.39 76.672 6055200 4041800 0 0 0 0 2013400 0 0 1137 1509 999 7035;7036;7037 4613;4614;4615 4613 3 DGLEEYSVYMHAK Unmodified 1540.6868 0.68679429 1396 Karp_02152 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 50.379 50.562 2 0.013916 18939 20181213_JW_Orientia_Karp_1_3 92.866 39.183 20318000 6935400 7923600 5458700 0 0 0 0 0 1138 1396 1000 7038;7039;7040 4616;4617 4617 2 DGLFCAK Unmodified 809.37417 0.37417435 1169 Karp_00623 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 43.181 43.469 2 0.036436 14141 20181213_JW_Orientia_Karp_3_1 85.359 30.573 20907000 8207700 7107900 0 0 4565600 0 1026200 0 1139 1169 1001 7041;7042;7043;7044 4618 4618 1 DGMDNQGGYGSVGR Oxidation (M) 1427.5736 0.57355545 17 A0A024QZP1;B4DHY1;Q53F48;A0A024QZK8;P31942-4;P31942-3;P31942-2;P31942 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 30.905 31.377 2 1.2739E-11 8501 20181213_JW_Orientia_Karp_1_3 197.07 131.85 15230000 0 0 7739700 3790100 1045000 0 1842200 812720 1140 17 1002 7045;7046;7047;7048;7049 4619;4620;4621 4619 5 3 DGMEYPFIGEGEPHVDGEPGDLR Oxidation (M) 2531.0911 0.091082791 1997 Q9UBS4;H7C2Y5;B3KW63 DNAJB11 DnaJ homolog subfamily B member 11 yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 60.827 61.12 3 0.023479 25674 20181213_JW_Orientia_Karp_1_3 65.924 49.172 37595000 16641000 6651100 3678800 2067400 5053300 2645100 858630 0 1141 1997 1003 7050;7051;7052;7053;7054;7055;7056 4622;4623;4624 4623 1531 2 DGNASGTTLLEALDCILPPTRPTDK Unmodified 2654.3221 0.32214536 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q53HR1;Q53G89;Q9H2I7;Q16577 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 74.423 74.458 3 8.9666E-11 27651 20181213_JW_Orientia_Karp_3_1 160.52 97.966 278590000 82933000 134070000 0 0 9020200 3847500 38381000 10337000 1142 1746 1004 7057;7058;7059;7060;7061;7062 4625;4626;4627;4628;4629 4628 5 DGNASGTTLLEALDCILPPTRPTDK Deamidation (NQ) 2655.3062 0.30616094 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q53HR1;Q53G89;Q9H2I7;Q16577 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 1 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 75.981 75.975 3 0.0055814 30791 20181213_JW_Orientia_Karp_3_2 77.959 49.547 141660000 38290000 10334000 46813000 4099000 4625900 2711600 29563000 5218600 1143 1746 1004 7063;7064;7065;7066;7067;7068;7069;7070 4630;4631;4632 4632 1148 3 DGNASGTTLLEALDCILPPTRPTDKPLR Unmodified 3020.5601 0.56008422 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q53HR1;Q53G89;Q9H2I7 EEF1A1;EEF1A1P5;EEF1A1L14 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 2 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 72.408 72.489 4 0.00059593 33370 20181213_JW_Orientia_Karp_1_2 75.177 50.533 272020000 77540000 64805000 29277000 0 0 0 93550000 6845400 1144 1746 1005 7071;7072;7073;7074;7075 4633 4633 1 DGNASGTTLLEALDCILPPTRPTDKPLR Deamidation (NQ) 3021.5441 0.54409981 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q53HR1;Q53G89;Q9H2I7 EEF1A1;EEF1A1P5;EEF1A1L14 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 1 0 2 By matching By MS/MS 1 1 73.361 73.434 4 0.020303 33823 20181213_JW_Orientia_Karp_1_3 51.001 31.264 17779000 0 4097500 13682000 0 0 0 0 0 1145 1746 1005 7076;7077 4634 4634 1148 1 DGNGYISAAELR Deamidation (NQ) 1265.5888 0.58879481 497 Q9BRL5;B4DJ51;B2RDW0;H0Y7A7;P62158;E7ETZ0;E7EMB3;G3V361;Q96HY3 CALM3;CALM2;CALM1 Calmodulin yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 54.144 54.41 2 0.0012963 19905 20181213_JW_Orientia_Karp_2_2 142.97 79.893 103160000 12108000 11782000 43218000 11423000 13146000 11489000 0 0 1146 497 1006 7078;7079;7080;7081;7082;7083 4635;4636;4637;4638;4639 4638 183 5 DGNTPLHFAAR Unmodified 1197.5891 0.58906958 1350 Karp_01526 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 39.778 39.968 3 0.034005 12725 20181213_JW_Orientia_Karp_1_3 70.942 30.445 50038000 15617000 6360400 25444000 0 2246200 370510 0 0 1147 1350 1007 7084;7085;7086;7087;7088 4640 4640 1 DGQVINETSQHHDDLE Unmodified 1835.7922 0.79219865 1571 V9HWE1;P08670;Q53HU8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 3 3 3 1 1 3 2 2 36.6 36.904 2;3 0.00088388 11257 20181213_JW_Orientia_Karp_1_1 115.06 74.787 664890000 201850000 129520000 224770000 1563400 930900 10337000 92808000 3105300 1148 1571 1008 7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102;7103;7104;7105;7106 4641;4642;4643;4644;4645;4646;4647;4648;4649 4641 9 DGQVINETSQHHDDLE Deamidation (NQ) 1836.7762 0.77621424 1571 V9HWE1;P08670;Q53HU8 HEL113;VIM Vimentin yes no 0 1 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 39.996 40.356 3 0.030385 13470 20181213_JW_Orientia_Karp_1_1 78.932 56.457 73050000 34852000 12228000 14237000 4523300 0 0 6920800 288960 1149 1571 1008 7107;7108;7109;7110;7111;7112 4650 4650 1042 1 DGSCGVAYVVQEPGDYEVSVK Unmodified 2257.0209 0.020877961 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91;H0Y5C6 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 1 1 61.37 61.644 2 0.0012287 26414 20181213_JW_Orientia_Karp_1_2 136.81 99.801 10879000 0 5620200 5258800 0 0 0 0 0 1150 1615 1009 7113;7114 4651;4652 4651 2 DGTIEYEYNTDCQIK Unmodified 1847.7884 0.78835883 1396 Karp_02152 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 49.579 49.849 2 0.00016632 18600 20181213_JW_Orientia_Karp_1_2 148.13 102.36 27114000 5988900 10105000 8635600 0 2228500 0 156280 0 1151 1396 1010 7115;7116;7117;7118;7119 4653 4653 1 DGTVLCELINALYPEGQAPVK Unmodified 2286.1566 0.15658358 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 77.664 77.627 2;3 0.0021063 31994 20181213_JW_Orientia_Karp_2_3 92.671 60.87 68793000 11502000 0 3178500 7222400 10481000 9878900 26530000 0 1152 1662 1011 7120;7121;7122;7123;7124;7125;7126;7127;7128;7129;7130 4654;4655;4656;4657 4656 4 DGTYAVTYIPDK Unmodified 1341.6452 0.64524705 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 53.278 53.477 2 0.00042428 21159 20181213_JW_Orientia_Karp_1_2 179.57 121.14 120470000 47766000 42375000 27096000 0 0 3237400 0 0 1153 1520 1012 7131;7132;7133;7134;7135 4658;4659;4660;4661 4659 4 DGVIADFK Unmodified 863.43888 0.43888309 1360 Karp_01811 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 49.541 49.808 2 0.029783 17627 20181213_JW_Orientia_Karp_2_3 82.75 31.415 13857000 0 7851800 1416100 0 0 4588700 0 0 1154 1360 1013 7136;7137;7138 4662 4662 1 DGVVEITGK Unmodified 916.48656 0.48656157 1553 V9HW43;P04792;B4DL87 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 42.972 43.249 2 0.00024541 13083 20181213_JW_Orientia_Karp_2_1 172.25 97.205 422130000 115510000 77442000 42151000 46585000 18790000 18642000 103010000 0 1155 1553 1014 7139;7140;7141;7142;7143;7144;7145;7146;7147;7148;7149;7150 4663;4664;4665;4666;4667;4668;4669;4670;4671;4672;4673 4667 11 DGVVLFK Unmodified 776.44324 0.44324019 171 B4DNL5;A0A024R8S5;P07237;F5H8J2;B4DLN6;H7BZ94;B4DUA5;I3L398;B4DJS0;I3L312;I3L3U6 P4HB Protein disulfide-isomerase yes no 0 0 0 0 By MS/MS 1 53.817 53.817 2 0.0069482 21711 20181213_JW_Orientia_Karp_1_1 159.19 78.815 0 0 0 0 0 0 0 0 0 1156 171 1015 7151 4674 4674 1 DGYDNIDGIWNTGESTQVR Unmodified 2138.9505 0.95049021 1316 Karp_01272 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 65.324 65.524 2 1.0719E-24 28701 20181213_JW_Orientia_Karp_1_2 224.06 168.71 50225000 20067000 10370000 11364000 0 0 0 8424400 0 1157 1316 1016 7152;7153;7154;7155 4675;4676;4677;4678 4676 4 DGYNAVILGYK Unmodified 1211.6186 0.61863837 1242 Karp_00909 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 57.363 57.669 2 8.0921E-06 23813 20181213_JW_Orientia_Karp_1_2 175.93 109.58 78586000 0 27554000 34370000 6141800 10520000 0 0 0 1158 1242 1017 7156;7157;7158;7159;7160;7161;7162 4679;4680;4681 4679 3 DGYNYTLSK Unmodified 1059.4873 0.48728985 450 B2R5H0;V9HWH9;P31949 HEL-S-43;S100A11 Protein S100;Protein S100-A11;Protein S100-A11, N-terminally processed yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.844 41.174 2 0.00080861 13366 20181213_JW_Orientia_Karp_1_3 138.08 70.91 95354000 19865000 24582000 14387000 8888400 0 0 27631000 0 1159 450 1018 7163;7164;7165;7166;7167;7168;7169 4682;4683;4684;4685;4686;4687 4683 6 DHAMYNVGQLPK Oxidation (M) 1387.6554 0.65543458 1364 Karp_01859 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 2 1 37.97 38.308 2;3 0.0049304 12055 20181213_JW_Orientia_Karp_1_2 105.17 62.817 74343000 24546000 12446000 24021000 0 0 0 10623000 2706000 1160 1364 1019 7170;7171;7172;7173;7174;7175;7176;7177 4688;4689;4690;4691 4689 940 4 DHASIQMNVAEVDK Unmodified 1555.7301 0.73005609 1742 Q8WVC2;Q6FGH5;P63220;Q9BYK1 RPS21 40S ribosomal protein S21 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 2 2 1 2 42.495 42.816 2;3 3.0205E-05 14231 20181213_JW_Orientia_Karp_1_3 168.61 125.3 70553000 12303000 15948000 20253000 3218200 4564700 1015300 13251000 0 1161 1742 1020 7178;7179;7180;7181;7182;7183;7184;7185;7186;7187;7188;7189 4692;4693;4694;4695 4693 4 DHASIQMNVAEVDK Oxidation (M) 1571.725 0.72497071 1742 Q8WVC2;Q6FGH5;P63220;Q9BYK1 RPS21 40S ribosomal protein S21 yes no 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 2 2 2 34.292 34.658 2;3 0.00015568 9357 20181213_JW_Orientia_Karp_2_1 156.6 104.1 83197000 15697000 15971000 11963000 13215000 2154300 9140300 11188000 3869700 1162 1742 1020 7190;7191;7192;7193;7194;7195;7196;7197;7198;7199;7200;7201;7202;7203;7204 4696;4697;4698;4699;4700;4701 4696 1364 6 DHAVVVGVYRPPPK Unmodified 1532.8463 0.8463469 1619 Q96BS4;P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 35.313 35.656 3 0.00033296 11157 20181213_JW_Orientia_Karp_1_1 150.51 117.19 109820000 28802000 50435000 13433000 0 5427900 0 9553900 2171200 1163 1619 1021 7205;7206;7207;7208;7209;7210 4702;4703;4704;4705 4702 4 DHFEEAMR Oxidation (M) 1049.4236 0.42364373 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.227 21.572 2 0.0062859 3172 20181213_JW_Orientia_Karp_3_2 111.65 77.476 11940000 2190400 2935400 2586100 1196100 521550 708080 1154100 648130 1164 1708 1022 7211;7212;7213;7214;7215;7216;7217;7218 4706;4707;4708;4709;4710 4710 1328 5 DHFEEAMR Unmodified 1033.4287 0.42872911 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 29.476 29.659 2 0.030691 8181 20181213_JW_Orientia_Karp_1_1 82.241 54.986 12836000 5881300 4219900 2734900 0 0 0 0 0 1165 1708 1022 7219;7220;7221 4711 4711 1 DHGGALGPEEFK Unmodified 1255.5833 0.5833155 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 37.956 38.177 3 0.016736 12403 20181213_JW_Orientia_Karp_1_1 89.403 34.864 19116000 14076000 0 0 0 4284200 0 0 755340 1166 1509 1023 7222;7223;7224 4712 4712 1 DHIFLHLNHLDSK Unmodified 1587.8158 0.81577505 1427 Karp_02373 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 39.808 40.108 4 0.0023465 13496 20181213_JW_Orientia_Karp_1_1 95.273 57.305 183430000 57483000 76165000 21960000 10507000 6516700 0 10802000 0 1167 1427 1024 7225;7226;7227;7228;7229;7230 4713;4714;4715;4716 4713 4 DHLVTAYNHLFETK Unmodified 1686.8366 0.83657007 1758 Q53GD8;Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 46.677 46.95 3 0.0012882 16097 20181213_JW_Orientia_Karp_2_3 158.31 93.013 134590000 33304000 24124000 13673000 14201000 25576000 16190000 0 7517700 1168 1758 1025 7231;7232;7233;7234;7235;7236;7237 4717;4718;4719;4720;4721;4722;4723;4724;4725 4724 9 DHMINQHIYSK Oxidation (M) 1400.6507 0.65068356 1118 Karp_00308 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 23.674 24.052 3 0.00063214 5288 20181213_JW_Orientia_Karp_1_3 132.17 90.467 26553000 0 0 9239000 0 4040300 7438400 0 5834900 1169 1118 1026 7238;7239;7240;7241;7242;7243;7244 4726;4727;4728;4729;4730;4731;4732 4727 635 7 DHPFGFVAVPTK Unmodified 1313.6768 0.67682195 365 H3BQQ9;A8K503;Q7KZS0;B0QYN7;P63279;H3BPC4 UBE2I SUMO-conjugating enzyme UBC9 yes no 0 0 0 0 By MS/MS By matching 1 1 53.354 53.453 2 0.0018546 21533 20181213_JW_Orientia_Karp_1_1 123.51 80.649 35091000 18297000 0 16794000 0 0 0 0 0 1170 365 1027 7245;7246 4733 4733 1 DHPLPEVAHVK Unmodified 1240.6564 0.65642086 1592 P13073;Q86WV2;H3BN72;H3BNV9;H3BPG0 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 31.477 31.747 3 0.00016636 8681 20181213_JW_Orientia_Karp_1_3 136.49 82.072 215910000 44546000 122320000 37753000 3323700 0 7965100 0 0 1171 1592 1028 7247;7248;7249;7250;7251;7252 4734;4735;4736;4737;4738;4739 4736 6 DHQYQFLEDAVR Unmodified 1519.7056 0.7055559 474 B2R8R5;Q13263;Q13263-2;M0R2I3;M0R3C0 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS 1 51.002 51.352 3 0.0010056 19679 20181213_JW_Orientia_Karp_1_2 136.53 61.586 0 0 0 0 0 0 0 0 0 1172 474 1029 7253 4740 4740 1 DHSGTLGPEEFK Unmodified 1315.6044 0.60444487 133 A0A024R694;P12814;P12814-3;B7Z2W3;A1L0V1 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 37.891 38.207 3 0.0041768 12407 20181213_JW_Orientia_Karp_1_1 95.618 58.947 20299000 8607200 6198700 2650700 941610 1011400 0 889430 0 1173 133 1030 7254;7255;7256;7257;7258;7259;7260 4741;4742;4743;4744 4741 4 DHTEDPKDPTEDAIEALAR Unmodified 2121.9815 0.98145599 1193 Karp_00798 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.624 51.969 3 0.010611 19990 20181213_JW_Orientia_Karp_1_3 88.781 58.354 279710000 78280000 51485000 60394000 32697000 19185000 22554000 12878000 2233200 1174 1193 1031 7261;7262;7263;7264;7265;7266;7267;7268 4745 4745 1 DHTIFSLVSGK Unmodified 1202.6295 0.62953741 1155 Karp_00570 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 55.039 55.397 2 3.8077E-09 20489 20181213_JW_Orientia_Karp_2_1 198.61 121.08 732300000 153580000 131990000 188170000 65520000 101510000 80245000 815080 10484000 1175 1155 1032 7269;7270;7271;7272;7273;7274;7275;7276 4746;4747;4748;4749;4750;4751 4748 6 DHTTIVHDK Unmodified 1064.5251 0.52507234 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 1 14.417 14.755 2;3 0.0002471 2470 20181213_JW_Orientia_Karp_3_1 164.72 108.6 160970000 6681200 69216000 27162000 15887000 2887900 4748800 7808400 26582000 1176 1296 1033 7277;7278;7279;7280;7281;7282;7283;7284;7285;7286;7287;7288 4752;4753;4754;4755;4756;4757;4758 4757 7 DHTTIVHDKNNSDIEK Unmodified 1864.8915 0.89151877 1296 Karp_01187 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 21.17 21.454 4 0.024656 4088 20181213_JW_Orientia_Karp_2_3 58.658 25.924 14530000 2053300 0 2376400 2662300 2520800 3751500 1165500 0 1177 1296 1034 7289;7290;7291;7292;7293;7294 4759;4760 4760 2 DHYIPNTLNPVFGR Unmodified 1641.8263 0.82633974 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 56.694 56.894 3 0.040625 23749 20181213_JW_Orientia_Karp_1_1 59.294 14.854 14140000 7002400 4634500 0 0 0 2503500 0 0 1178 1991 1035 7295;7296;7297 4761 4761 1 DIAQQLQATCTSLGSSIQGLPTNVK Unmodified 2629.3381 0.33812978 1515 O60664-4;O60664-3;O60664;K7ERZ3;O60664-2 PLIN3 Perilipin-3 yes no 0 0 0 0 By matching By MS/MS 1 1 71.728 71.878 3 0.0264 26258 20181213_JW_Orientia_Karp_3_1 43.658 21.614 9813000 0 0 0 660790 0 0 9152200 0 1179 1515 1036 7298;7299 4762 4762 1 DICNDVLSLLEK Unmodified 1417.7123 0.71228076 824 D0PNI1;P63104;E7EX29;B0AZS6;E7ESK7 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 75.198 75.213 2 3.065E-05 28093 20181213_JW_Orientia_Karp_3_1 172.11 63.005 164350000 53680000 17695000 22466000 0 11455000 9392100 46379000 3284600 1180 824 1037 7300;7301;7302;7303;7304;7305;7306 4763 4763 1 DIDAFWLQR Unmodified 1162.5771 0.57710791 304 A4FU77;O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 By MS/MS By MS/MS 1 1 70.936 70.985 2 0.004485 32360 20181213_JW_Orientia_Karp_1_1 125.31 55.49 0 0 0 0 0 0 0 0 0 1181 304 1038 7307;7308 4764;4765 4764 2 DIDEVSSLLR Unmodified 1145.5928 0.59281755 1695 Q53HU0;P50990;P50990-2;H7C4C8;Q7Z759;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 63.998 64.18 2 7.7933E-05 28213 20181213_JW_Orientia_Karp_1_1 149.57 58.864 19029000 12900000 2214500 2097500 0 1325000 0 0 492310 1182 1695 1039 7309;7310;7311;7312;7313;7314 4766;4767 4766 2 DIDPQNDLTFLR Unmodified 1445.7151 0.71505795 436;993 B1AKR6;Q9NP97;B4DFR2;Q8TF09;H3BQI1 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 67.994 68.201 2 1.6821E-05 24123 20181213_JW_Orientia_Karp_3_1 175.74 119.31 138130000 28367000 14253000 16986000 10754000 17065000 12031000 28443000 10231000 1183 436;993 1040 7315;7316;7317;7318;7319;7320;7321;7322 4768;4769;4770;4771;4772;4773;4774;4775;4776 4775 9 DIDPQNDLTFLR Deamidation (NQ) 1446.6991 0.69907354 436;993 B1AKR6;Q9NP97;B4DFR2;Q8TF09;H3BQI1 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 no no 0 1 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 69.582 69.717 2 0.027881 27774 20181213_JW_Orientia_Karp_2_2 89.266 44.513 28844000 6017100 1656800 8282200 2614300 4200100 1842800 4231100 0 1184 436;993 1040 7323;7324;7325;7326;7327;7328;7329 4777 4777 169 1 DIDYIAIPSQNK Unmodified 1375.6983 0.69834526 1123 Karp_00323 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 58.531 58.824 2 0.0011407 24871 20181213_JW_Orientia_Karp_1_1 132.25 88.953 90492000 30622000 19663000 18061000 7324300 6899800 7256600 665450 0 1185 1123 1041 7330;7331;7332;7333;7334;7335;7336 4778;4779 4778 2 DIEDVFYK Unmodified 1027.4862 0.48622722 1040 Q59FA2;J3KTL2;Q07955-3;Q07955;Q07955-2;J3QQV5;J3KSW7;A8K1L8 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 58.987 59.237 2 0.025926 22801 20181213_JW_Orientia_Karp_2_3 84.916 32.13 23031000 4386300 3203500 2838000 2536200 4453200 5613700 0 0 1186 1040 1042 7337;7338;7339;7340;7341;7342 4780 4780 1 DIEEIIDELK Unmodified 1215.6234 0.62344898 383 Q9UEH5;Q6IPW4;Q6IB76;A8K750;E7EPT4;P19404 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 74.017 74.04 2 2.5382E-12 34338 20181213_JW_Orientia_Karp_1_2 218.73 36.339 18880000 0 9400700 9479600 0 0 0 0 0 1187 383 1043 7343;7344;7345 4781;4782;4783 4782 3 DIELVMSQANVSR Oxidation (M) 1476.7242 0.72424243 213 F8VZJ2;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3-2;E9PAV3;B4DDI8 NACA;hCG_2016482 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.731 50.033 2 8.6487E-19 17479 20181213_JW_Orientia_Karp_2_2 225.55 171.95 267420000 37649000 24303000 31138000 59100000 53291000 49823000 0 12120000 1188 213 1044 7346;7347;7348;7349;7350;7351;7352 4784;4785;4786;4787;4788;4789;4790 4788 165 7 DIELVMSQANVSR Unmodified 1460.7293 0.72932781 213 F8VZJ2;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3-2;E9PAV3;B4DDI8 NACA;hCG_2016482 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 58.801 59.071 2 3.741E-11 24689 20181213_JW_Orientia_Karp_1_2 196.27 14.607 200190000 50958000 44973000 62986000 0 0 37678000 3592700 0 1189 213 1044 7353;7354;7355;7356;7357;7358 4791;4792;4793;4794;4795 4791 5 DIENQYETQITQIEHEVSSSGQEVQSSAK Unmodified 3263.5066 0.5065879 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 2 3 1 65.996 66.211 3 1.5369E-12 29262 20181213_JW_Orientia_Karp_1_1 140.57 115.93 3833800000 702710000 366310000 278240000 34111000 903480000 508570000 1029800000 10541000 + 1190 1653 1045 7359;7360;7361;7362;7363;7364;7365;7366;7367;7368;7369;7370;7371;7372;7373;7374;7375;7376 4796;4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807;4808;4809;4810;4811;4812;4813 4796 18 DIENQYETQITQIEHEVSSSGQEVQSSAK Deamidation (NQ) 3264.4906 0.49060349 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 4 2 2 66.655 66.838 3 7.1057E-09 25565 20181213_JW_Orientia_Karp_2_3 122.59 93.772 464940000 50348000 70679000 45298000 0 82918000 68903000 139590000 7204900 + 1191 1653 1045 7377;7378;7379;7380;7381;7382;7383;7384;7385;7386;7387;7388;7389;7390;7391;7392;7393 4814;4815;4816;4817;4818;4819;4820;4821;4822;4823;4824 4820 1095;1938;1939;1940 10 DIFEVTAR Unmodified 949.4869 0.48689592 1127 Karp_00330 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 54.286 54.574 2 0.034849 22174 20181213_JW_Orientia_Karp_1_1 79.906 19.788 32186000 18083000 6839800 0 2824800 4437800 0 0 0 1192 1127 1046 7394;7395;7396;7397 4825;4826 4825 2 DIFLDDGVDEQVLMELK Oxidation (M) 1993.9554 0.95542416 1027 J3KNC0;P52655 GTF2A1 Transcription initiation factor IIA subunit 1;Transcription initiation factor IIA alpha chain;Transcription initiation factor IIA beta chain yes no 0 0 1 0 By MS/MS 1 75.287 75.287 2 0.040287 35138 20181213_JW_Orientia_Karp_1_1 87.498 37.215 0 0 0 0 0 0 0 0 0 1193 1027 1047 7398 4827 4827 1 DIFQADFLQENLQMDFK Oxidation (M) 2116.9776 0.97755658 1222 Karp_00889 yes yes 0 0 1 0 By MS/MS 1 75.038 75.038 2 0.0063016 34966 20181213_JW_Orientia_Karp_1_1 120.92 79.87 0 0 0 0 0 0 0 0 0 1194 1222 1048 7399 4828 4828 787 1 DIFTELK Unmodified 864.45928 0.45928418 1226 Karp_00893 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 58.248 58.423 2 0.012576 24674 20181213_JW_Orientia_Karp_1_1 116.88 15.193 423610000 346680000 0 51432000 0 2591800 22907000 0 0 1195 1226 1049 7400;7401;7402;7403;7404 4829;4830;4831;4832 4829 4 DIGAIAQVHAENGDIIAEEQQR Deamidation (NQ) 2377.151 0.15098093 1814 Q53ET2;Q59GB4;Q16555-2;Q16555;Q86U75 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 57.294 57.596 3 1.0213E-05 23444 20181213_JW_Orientia_Karp_1_3 133.21 97.1 66311000 21593000 13618000 12517000 5325900 4590000 4621000 0 4045600 1196 1814 1050 7405;7406;7407;7408;7409;7410;7411 4833;4834 4834 1166 2 DIIALNPLYR Unmodified 1186.671 0.67100829 533 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776-3;P36776-2;P36776;B4DPX0;A4VCH6 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 0 0 0 0 By MS/MS By matching 1 1 68.468 68.797 2 0.022956 30844 20181213_JW_Orientia_Karp_1_2 82.287 5.3437 1558500 0 1215500 0 0 0 0 0 343080 1197 533 1051 7412;7413 4835 4835 1 DIIDESTGIVNR Unmodified 1330.6729 0.67285879 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 55.876 56.234 2 7.7298E-12 21115 20181213_JW_Orientia_Karp_2_3 228.2 138.51 565590000 122710000 135580000 144220000 39654000 52487000 57737000 12990000 213450 1198 1169 1052 7414;7415;7416;7417;7418;7419;7420;7421 4836;4837;4838;4839;4840;4841;4842;4843;4844 4842 9 DIIFAIK Unmodified 818.49019 0.49019038 1587 P11177-3;P11177-2;P11177 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS 1 62.812 62.812 2 0.03052 27426 20181213_JW_Orientia_Karp_1_1 101.21 46.447 0 0 0 0 0 0 0 0 0 1199 1587 1053 7422 4845 4845 1 DIINEEEVQFLK Unmodified 1475.7508 0.75077476 628 P49588;B4DR45 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 67.367 67.543 2 5.8507E-17 29709 20181213_JW_Orientia_Karp_1_3 222.18 104.48 61915000 23164000 12319000 18949000 0 2558200 1633600 0 3292400 1200 628 1054 7423;7424;7425;7426;7427;7428 4846;4847;4848 4847 3 DIIRAVGAYSK Unmodified 1191.6612 0.66117189 801 CON__P15636 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 2 1 1 1 1 42.755 43.101 2;3 0.0090271 13851 20181213_JW_Orientia_Karp_2_1 120.86 42.521 167170000 21404000 32337000 10659000 51452000 10411000 0 36190000 4716100 + 1201 801 1055 7429;7430;7431;7432;7433;7434;7435;7436;7437;7438 4849;4850;4851;4852 4849 3 DIISDTSGDFR Unmodified 1224.5622 0.5622457 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YM50;H0YKS4;H0YNP5;B3KRQ1;H0YN28;H0YL33;H0YNA0;H0YN52 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.369 54.685 2 5.1568E-13 22136 20181213_JW_Orientia_Karp_1_1 218.94 164.33 1494900000 582880000 341930000 265590000 76653000 115080000 111330000 0 1441200 1202 124 1056 7439;7440;7441;7442;7443;7444;7445 4853;4854;4855;4856;4857;4858 4853 6 DIISDTSGDFRK Unmodified 1352.6572 0.65720872 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YM50;H0YKS4;H0YNP5;B3KRQ1;H0YN28;H0YL33;H0YNA0;H0YN52 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 1 1 1 44.381 44.646 2;3 0.0022348 14725 20181213_JW_Orientia_Karp_2_1 150.15 67.699 731080000 247850000 271880000 169030000 16439000 17160000 0 0 8710400 1203 124 1057 7446;7447;7448;7449;7450;7451;7452;7453;7454;7455;7456 4859;4860;4861;4862 4860 4 DILADLIPK Unmodified 996.58555 0.58554733 941 F8W031;F8W0J2;F8VP03;F8VWQ5;F8VU34;F8VR34;F8VTT8;F8W4S1;B4DJV2;A0A024RB75;O75390 CS Citrate synthase;Citrate synthase, mitochondrial yes no 0 0 0 0 By MS/MS 1 73.695 73.695 2 0.02593 34101 20181213_JW_Orientia_Karp_1_1 93.162 53.095 0 0 0 0 0 0 0 0 0 1204 941 1058 7457 4863 4863 1 DILAQSPAAEPLK Unmodified 1351.7347 0.73473076 958 G3XAI2;P07942;Q8TAS6 LAMB1 Laminin subunit beta-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 54.167 54.35 2 0.010394 21465 20181213_JW_Orientia_Karp_1_3 103.88 56.057 30062000 8032600 9164500 12865000 0 0 0 0 0 1205 958 1059 7458;7459;7460 4864;4865 4865 2 DILGGTCLNVGCIPSK Unmodified 1702.8382 0.83822633 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 64.58 64.696 2 1.1008E-12 22363 20181213_JW_Orientia_Karp_3_1 209.11 150.48 139680000 44000000 49842000 45841000 0 0 0 0 0 1206 1066 1060 7461;7462;7463;7464 4866;4867;4868 4868 3 DILGNDWR Unmodified 987.47739 0.47739386 1410 Karp_02227 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 55.369 55.636 2 0.0050296 22454 20181213_JW_Orientia_Karp_1_2 122.19 63.583 241390000 61040000 71883000 38140000 7018500 23523000 39786000 0 0 1207 1410 1061 7465;7466;7467;7468;7469;7470 4869;4870;4871;4872 4870 4 DILGNDWR Deamidation (NQ) 988.46141 0.46140945 1410 Karp_02227 yes yes 0 1 0 0 By matching By matching By MS/MS 1 1 1 58.599 58.782 2 0.0097549 24294 20181213_JW_Orientia_Karp_1_3 118.74 48.218 22011000 15994000 2268700 3748500 0 0 0 0 0 1208 1410 1061 7471;7472;7473 4873 4873 922 1 DILHYWK Unmodified 973.50215 0.50215205 1123 Karp_00323 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 49.605 49.855 2 0.030664 17590 20181213_JW_Orientia_Karp_2_3 88.643 35.291 43020000 11850000 9322000 8057500 6091800 3966700 3732500 0 0 1209 1123 1062 7474;7475;7476;7477;7478;7479 4874;4875;4876;4877 4877 4 DILIQYDR Unmodified 1034.5397 0.53965977 1727 P62249;M0R210 RPS16 40S ribosomal protein S16 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 52.926 53.245 2 0.026462 21357 20181213_JW_Orientia_Karp_1_1 84.615 32.666 75988000 23327000 19483000 0 12356000 7689800 12945000 0 186790 1210 1727 1063 7480;7481;7482;7483;7484;7485 4878 4878 1 DILLQQQQQLGHGGPEAAPR Unmodified 2155.1134 0.11341363 1891 Q7Z5L9-2;Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 47.007 47.22 3 0.0039274 16258 20181213_JW_Orientia_Karp_2_3 86.213 58.57 52073000 31444000 0 0 8873700 3399100 8356400 0 0 1211 1891 1064 7486;7487;7488;7489 4879;4880;4881 4881 3 DILLRPELEELR Unmodified 1494.8406 0.84059282 102 A0A024R4X0;P00387-2;P00387;P00387-3;Q6ZVI6 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 60.616 60.928 3 0.015089 25950 20181213_JW_Orientia_Karp_1_2 90.697 52.063 97465000 0 6547700 46894000 0 12204000 11814000 0 20006000 1212 102 1065 7490;7491;7492;7493;7494 4882;4883 4882 2 DILNPDSSMETSPDFFF Oxidation (M) 1976.835 0.83497467 838 D3DUZ3;Q16666-2;Q16666;Q16666-3;Q16666-6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 81.99 81.905 2 0.012863 38533 20181213_JW_Orientia_Karp_1_2 87.216 61.743 12026000 6457000 1208100 4360700 0 0 0 0 0 1213 838 1066 7495;7496;7497 4884;4885;4886 4885 480 3 DILSQLGIK Unmodified 985.5808 0.5807963 783 CON__REFSEQ:XP_001252647;CON__A2I7N3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 70.642 70.767 2 0.00302 28309 20181213_JW_Orientia_Karp_2_2 113.66 45.237 9590400 1966400 0 1884200 0 2061800 0 3678000 0 + 1214 783 1067 7498;7499;7500;7501;7502 4887;4888;4889;4890 4889 4 DIMAEIYK Oxidation (M) 997.47903 0.47903335 77;1867 B4DL49;A0A024R374;P07858;B4DMY4;B3KUJ8;A8K2H4;Q6LAF9 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 45.265 45.558 2 0.0034483 15885 20181213_JW_Orientia_Karp_1_2 149.4 67.16 339040000 155030000 78875000 83609000 308050 16134000 3998000 1089500 0 1215 77;1867 1068 7503;7504;7505;7506;7507;7508;7509;7510 4891;4892;4893;4894;4895;4896;4897 4892 81 7 DINAVLIDMER Unmodified 1287.6493 0.64928657 3 D3DV75;B7Z8Y3;H0YCK3;A0A024DAK3;Q59EC0;P55265-5;P55265-3;P55265-2;P55265;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 68.616 68.791 2 0.0051382 30495 20181213_JW_Orientia_Karp_1_3 130.1 80.057 6079200 3372900 0 0 0 0 0 2706300 0 1216 3 1069 7511;7512;7513;7514 4898;4899;4900 4899 3 DINEFNNR Unmodified 1020.4625 0.46247208 1164 Karp_00616 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 36.291 36.591 2 0.012901 11558 20181213_JW_Orientia_Karp_1_1 99.136 63.642 78135000 30070000 17995000 22057000 0 0 0 8012100 0 1217 1164 1070 7515;7516;7517;7518 4901;4902;4903 4901 3 DINEFNNRFPGLFTTK Deamidation (NQ) 1912.9319 0.93192702 1164 Karp_00616 yes yes 0 1 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 68.719 68.897 3 0.0083121 31046 20181213_JW_Orientia_Karp_1_1 103.14 49.043 43380000 6959400 2969000 8969400 1138300 6289400 7979100 9075000 0 1218 1164 1071 7519;7520;7521;7522;7523;7524;7525 4904;4905;4906;4907 4904 554;555 4 DINLNLVNAQQAR Unmodified 1467.7794 0.77938954 1109 Karp_00291 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.415 57.664 2 8.5161E-25 21844 20181213_JW_Orientia_Karp_2_1 240.21 151.13 138120000 35180000 29543000 41933000 9747700 12087000 9631000 0 0 1219 1109 1072 7526;7527;7528;7529;7530;7531 4908;4909;4910;4911;4912 4910 5 DINYVNPVIK Unmodified 1173.6394 0.63937381 1541 P01031 C5 Complement C5;Complement C5 beta chain;Complement C5 alpha chain;C5a anaphylatoxin;Complement C5 alpha' chain yes yes 0 0 0 0 By MS/MS 1 75.612 75.612 2 0.0069169 35476 20181213_JW_Orientia_Karp_1_1 99.013 44.597 42956000 42956000 0 0 0 0 0 0 0 1220 1541 1073 7532 4913 4913 1 DIPGLTDTTVPR Unmodified 1283.6721 0.67213051 285 Q96DV6;A2A3R6;P62753;A2A3R5;Q9BZU1 RPS6 40S ribosomal protein S6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 57.959 58.209 2 0.00092051 23918 20181213_JW_Orientia_Karp_1_3 136.02 86.6 240590000 73378000 63508000 77510000 7249100 8236100 10705000 0 0 1221 285 1074 7533;7534;7535;7536;7537;7538 4914;4915;4916;4917;4918 4916 5 DIPNVNDESLR Unmodified 1270.6153 0.61534391 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 48.432 48.74 2 0.00125 17865 20181213_JW_Orientia_Karp_1_2 125.74 76.204 370660000 108850000 104260000 54142000 65906000 18131000 19238000 128080 0 1222 1170 1075 7539;7540;7541;7542;7543;7544;7545 4919;4920;4921;4922;4923;4924 4920 6 DIQNIADNIGK Unmodified 1199.6146 0.61461563 1382 Karp_02121 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 51.876 52.059 2 0.011251 20138 20181213_JW_Orientia_Karp_1_2 93.839 49.522 31326000 12331000 9513300 9482200 0 0 0 0 0 1223 1382 1076 7546;7547;7548 4925 4925 1 DISAQLSQETLDTK Unmodified 1547.7679 0.76788138 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 53.805 54.127 2 3.1713E-46 19700 20181213_JW_Orientia_Karp_2_2 267.37 210.73 178720000 43666000 33222000 54482000 16613000 12967000 14042000 3730000 0 1224 1428 1077 7549;7550;7551;7552;7553;7554;7555 4926;4927 4927 1 DISCFFEEVIK Unmodified 1385.6537 0.65370325 1317 Karp_01279 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 75.074 75.083 2 2.5889E-09 34959 20181213_JW_Orientia_Karp_1_1 202.44 133.59 128970000 50523000 0 37728000 0 8156500 6442900 25629000 492830 1225 1317 1078 7556;7557;7558;7559;7560;7561;7562 4928;4929;4930;4931;4932;4933;4934 4928 7 DISEASVFDAYVLPK Unmodified 1652.8298 0.82975336 212 Q75MH1;A0A024RB14;P62854 RPS26 40S ribosomal protein S26 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 73.413 73.445 2 4.8024E-13 33643 20181213_JW_Orientia_Karp_1_3 199.12 133.28 238590000 84271000 40461000 64424000 5688100 5513400 3467500 27277000 7488300 1226 212 1079 7563;7564;7565;7566;7567;7568;7569;7570 4935;4936;4937;4938;4939 4937 5 DISLSDYK Unmodified 939.45493 0.45492709 1773 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.828 47.061 2 0.0052141 16824 20181213_JW_Orientia_Karp_1_2 119.41 41.484 73269000 29392000 18885000 10251000 5745800 3470900 5523200 0 0 1227 1773 1080 7571;7572;7573;7574;7575;7576 4940;4941;4942;4943;4944;4945;4946 4941 7 DISNYLK Unmodified 851.43888 0.43888309 1167 Karp_00621 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 48.321 48.571 2 0.036436 16920 20181213_JW_Orientia_Karp_2_3 85.359 3.0545 158900000 15763000 89054000 10780000 29645000 3594100 10065000 0 0 1228 1167 1081 7577;7578;7579;7580;7581;7582 4947 4947 1 DISQAYYTVYK Unmodified 1349.6503 0.65033243 1590 P12429;D6RFG5;D6RA82 ANXA3 Annexin A3;Annexin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 2 1 1 1 1 1 1 1 53.808 54.166 2 0.00057102 21255 20181213_JW_Orientia_Karp_1_3 138.22 92.09 247320000 50126000 72680000 44918000 20576000 23331000 25075000 3611400 6998100 1229 1590 1082 7583;7584;7585;7586;7587;7588;7589;7590;7591 4948;4949;4950 4949 3 DISTNYYASQK Deamidation (NQ) 1289.5776 0.57756142 1598 Q5CAQ5;V9HWP2;P14625;B4DU71;B4DHT9;H0YIV0 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 1 0 0 By MS/MS 1 40.667 40.667 2 0.029263 13725 20181213_JW_Orientia_Karp_1_1 90.149 50.082 0 0 0 0 0 0 0 0 0 1230 1598 1083 7592 4951 4951 1065 1 DISTNYYASQK Unmodified 1288.5935 0.59354583 1598 Q5CAQ5;V9HWP2;P14625;B4DU71;B4DHT9;H0YIV0 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 39.422 39.802 2 9.5809E-19 12745 20181213_JW_Orientia_Karp_1_2 238.01 152.34 151700000 0 67359000 47563000 6307900 4312100 0 26159000 0 1231 1598 1083 7593;7594;7595;7596;7597 4952;4953 4952 2 DITDTSIGAYWTSAPGMVR Oxidation (M) 2055.9572 0.95715549 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 69.023 69.165 2 0.00027303 31175 20181213_JW_Orientia_Karp_1_1 122.52 78.221 34461000 12339000 0 7224400 0 0 2363100 8606900 3927900 1232 852 1084 7598;7599;7600;7601;7602 4954;4955;4956 4954 486 3 DITGGLPR Unmodified 827.45012 0.45011648 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 43.584 43.893 2 0.0051335 14312 20181213_JW_Orientia_Karp_3_1 120.62 54.818 77261000 34267000 30244000 0 4954000 3438300 2345100 2012200 0 1233 1169 1085 7603;7604;7605;7606;7607;7608 4957;4958;4959 4959 3 DITSDTSGDFR Unmodified 1212.5259 0.5258602 1548 Q5TZZ9;P04083;B5BU38;B4DL19;Q5T3N1 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 43.508 43.853 2 2.6144E-18 14582 20181213_JW_Orientia_Karp_2_3 232.72 159.84 262270000 56617000 69678000 65348000 17802000 0 7451100 44712000 666360 1234 1548 1086 7609;7610;7611;7612;7613;7614;7615 4960 4960 1 DIVAQYAENCGQYYVTHR Unmodified 2185.9851 0.98510158 1347 Karp_01523 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 52.713 53.056 3 0.027332 20598 20181213_JW_Orientia_Karp_1_3 71.601 49.798 106850000 33676000 25895000 29673000 0 0 11459000 5267900 874660 1235 1347 1087 7616;7617;7618;7619;7620;7621 4961 4961 1 DIVENYFMR Oxidation (M) 1201.5438 0.54375887 474 B2R8R5;Q13263;M0R2I3 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 56.963 57.308 2 0.0043369 23269 20181213_JW_Orientia_Karp_1_3 103.55 55.972 38338000 5388100 7615000 13279000 1398100 2924000 3442700 73137 4218000 1236 474 1088 7622;7623;7624;7625;7626;7627;7628;7629 4962 4962 309 1 DIVEYILPYK Unmodified 1251.6751 0.67509062 1246 Karp_00917 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.419 72.477 2 0.00057229 33052 20181213_JW_Orientia_Karp_1_3 132.9 90.919 767290000 331830000 79776000 122540000 0 49380000 29573000 149440000 4752800 1237 1246 1089 7630;7631;7632;7633;7634;7635;7636 4963;4964;4965;4966;4967 4963 5 DIVEYILPYKK Unmodified 1379.7701 0.77005364 1246 Karp_00917 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 61.051 61.326 2;3 1.4748E-06 26216 20181213_JW_Orientia_Karp_1_2 175.91 120.35 185880000 64308000 37015000 28088000 6135800 22709000 15282000 0 12341000 1238 1246 1090 7637;7638;7639;7640;7641;7642;7643;7644;7645;7646;7647;7648;7649 4968;4969;4970;4971;4972;4973;4974 4970 6 DIVILNASNGDEILSK Deamidation (NQ) 1700.8832 0.88324549 1300 Karp_01233 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 70.715 70.831 2 5.1659E-28 32185 20181213_JW_Orientia_Karp_1_1 238.07 177.67 65727000 16362000 16471000 9738200 6385400 6609700 0 10160000 0 1239 1300 1091 7650;7651;7652;7653;7654;7655;7656 4975;4976;4977;4978 4975 726 4 DIVQFVPFR Unmodified 1119.6077 0.60767976 1904 Q8IYJ1;Q4G168;B3KWK1;B2RD40;A0A024R994;A8K8A4;E7ENV7;B7Z370;Q86YQ8-2;Q9HCH3-2;Q96FN4-2;O75131;Q96FN4;Q96A23;O95741;Q9UBL6-2;Q86YQ8;Q96A23-2;Q9HCH3;O95741-2;Q9UBL6 CPNE9;CPNE4;CPNE6;CPNE3;CPNE8;CPNE5;CPNE2;CPNE7 Copine-9;Copine-8;Copine-5;Copine-2;Copine-3;Copine-4;Copine-6;Copine-7 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 71.329 71.428 2 0.0040497 32261 20181213_JW_Orientia_Karp_1_3 108.74 60.319 14492000 1211500 3003800 5514400 0 0 0 4762000 0 1240 1904 1092 7657;7658;7659;7660 4979;4980 4979 2 DIVQFVPYR Unmodified 1135.6026 0.60259438 431 Q59EI4;F2Z2V0;B0QZ18;Q99829;H0Y524 CPNE1 Copine-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 63.017 63.253 2 0.0027611 27635 20181213_JW_Orientia_Karp_1_1 114.89 68.438 13556000 5247100 0 7564000 0 0 0 0 744540 1241 431 1093 7661;7662;7663 4981;4982 4981 2 DIVVQETMEDIDK Oxidation (M) 1549.7182 0.718154 514 Q6IAW5;B3KQF5;O43852;O43852-3;B3KNG6;A0A024R755;O43852-2;O43852-4;H0Y875;O43852-15;O43852-10;O43852-6 CALU Calumenin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 48.975 49.402 2 0.0078151 17144 20181213_JW_Orientia_Karp_2_1 100.02 58.333 27291000 0 8456000 7655700 8199700 0 0 0 2979900 1242 514 1094 7664;7665;7666;7667 4983;4984;4985 4985 333 3 DIYPPQSVLR Unmodified 1186.6346 0.63462279 1104 Karp_00281 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 55.095 55.411 2 0.018777 20662 20181213_JW_Orientia_Karp_2_3 84.817 30.095 626620000 154540000 156610000 201450000 28742000 39926000 44687000 0 658430 1243 1104 1095 7668;7669;7670;7671;7672;7673;7674 4986;4987 4987 2 DKEAEFDLSMIVGQVK Oxidation (M) 1823.8975 0.89751535 1371 Karp_02001 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 63.756 63.949 3 2.8577E-13 24806 20181213_JW_Orientia_Karp_2_2 202.32 154.78 97561000 22967000 0 18333000 851390 25579000 22474000 0 7356700 1244 1371 1096 7675;7676;7677;7678;7679;7680 4988;4989;4990;4991;4992;4993 4991 952 6 DKEAEFDLSMIVGQVK Unmodified 1807.9026 0.90260073 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 68.163 68.38 2;3 7.6687E-13 24210 20181213_JW_Orientia_Karp_3_1 246.31 175.82 295400000 89745000 42425000 48547000 8845700 48470000 22291000 18726000 16349000 1245 1371 1096 7681;7682;7683;7684;7685;7686;7687;7688;7689;7690;7691;7692;7693;7694;7695 4994;4995;4996;4997;4998;4999;5000;5001;5002;5003;5004 5003 9 DKFHSAEITLIK Unmodified 1400.7664 0.76636524 1395 Karp_02151 yes yes 0 0 0 1 By MS/MS By matching By matching 1 1 1 41.256 41.674 3 0.015444 13805 20181213_JW_Orientia_Karp_1_2 78.705 31.908 19237000 0 12712000 0 0 0 1391900 5132800 0 1246 1395 1097 7696;7697;7698 5005 5005 1 DKIETTSYGK Unmodified 1140.5663 0.56626845 1108 Karp_00286 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 23.475 23.845 2 0.00010497 5267 20181213_JW_Orientia_Karp_1_2 172.98 85.8 54664000 0 20212000 10787000 6157400 4789400 3013800 4933200 4770900 1247 1108 1098 7699;7700;7701;7702;7703;7704;7705;7706 5006;5007;5008;5009;5010;5011 5006 6 DKLESEMEDAYHEHQANLLR Oxidation (M) 2443.1074 0.10740156 1622 Q9BSV4;Q86VG2;P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.002 37.335 4 3.8181E-05 10766 20181213_JW_Orientia_Karp_2_1 132.14 98.765 153840000 46195000 29430000 27813000 22076000 10603000 0 17722000 0 1248 1622 1099 7707;7708;7709;7710;7711;7712 5012;5013;5014;5015;5016;5017;5018;5019;5020 5017 1245 9 DKLESEMEDAYHEHQANLLR Unmodified 2427.1125 0.11248694 1622 Q9BSV4;Q86VG2;P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 47.765 48.11 4 7.2112E-06 17800 20181213_JW_Orientia_Karp_1_1 144.17 108.87 361220000 40320000 93572000 55353000 60794000 24413000 27252000 129050 59384000 1249 1622 1099 7713;7714;7715;7716;7717;7718;7719;7720 5021;5022;5023;5024;5025;5026 5021 6 DKNGAQYIIEMQVDPTQGFEK Oxidation (M);Deamidation (NQ) 2427.1264 0.12640567 1151;1356;1083 Karp_00131;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 1 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.252 59.502 3 2.6893E-17 24835 20181213_JW_Orientia_Karp_1_2 194.7 129.62 267170000 81858000 70874000 74548000 6817700 33078000 0 0 0 1250 1083;1151;1356 1100 7721;7722;7723;7724;7725 5027;5028;5029;5030;5031;5032 5028 433;1795 600 6 DKNGAQYIIEMQVDPTQGFEK Deamidation (NQ) 2411.1315 0.13149104 1151;1356;1083 Karp_00131;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 1 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 66.197 66.399 3 0.00015939 25757 20181213_JW_Orientia_Karp_3_2 126.26 77.226 169480000 82932000 19344000 14767000 0 23539000 9038400 4890700 14965000 1251 1083;1151;1356 1100 7726;7727;7728;7729;7730;7731;7732 5033;5034;5035;5036;5037;5038 5038 433;1795 4 DKNGTQYIIEMQVDPTQGFEK Oxidation (M);Deamidation (NQ) 2457.137 0.13697035 1081;1086 Karp_00113;Karp_01301;Karp_00209 no no 0 1 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 2 2 2 2 1 2 58.527 58.852 3 8.0852E-05 22364 20181213_JW_Orientia_Karp_2_2 139.43 90.292 150600000 26869000 28059000 41166000 15261000 21953000 13191000 793070 3308600 1252 1081;1086 1101 7733;7734;7735;7736;7737;7738;7739;7740;7741;7742;7743;7744;7745 5039;5040;5041;5042;5043 5042 430;1793;1794 598 5 DKNGTQYIIEMQVDPTQGFEK Deamidation (NQ) 2441.1421 0.14205573 1081;1086 Karp_00113;Karp_01301;Karp_00209 no no 0 1 0 1 By MS/MS By matching By matching By matching 1 1 1 1 66.182 66.434 3 0.00031258 29017 20181213_JW_Orientia_Karp_1_3 128.29 69.868 46138000 0 0 22927000 0 0 7901400 8398800 6911000 1253 1081;1086 1101 7746;7747;7748;7749 5044 5044 430;1793;1794 1 DKPDNFQLFQSPHGK Unmodified 1756.8533 0.85328277 808 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 41.597 41.913 3 0.0034975 12864 20181213_JW_Orientia_Karp_2_2 115.38 79.857 82369000 8583900 0 14997000 11030000 13178000 9362600 23850000 1368800 + 1254 808 1102 7750;7751;7752;7753;7754;7755;7756 5045;5046;5047;5048;5049;5050;5051 5047 7 DKPHCNIGTIGHVDHGK Unmodified 1883.9061 0.9060634 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 21.903 22.248 4 0.023389 4249 20181213_JW_Orientia_Karp_2_3 62.861 39.853 255410000 19967000 69854000 19752000 25869000 21397000 16139000 54126000 28302000 1255 1176;1244 1103 7757;7758;7759;7760;7761;7762;7763;7764 5052;5053;5054;5055;5056 5056 4 DKPVYDELFYTLSPINGK Deamidation (NQ) 2099.0463 0.046288076 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 1 0 1 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 72.557 72.607 3 0.00039371 33199 20181213_JW_Orientia_Karp_1_3 132.25 88.393 45910000 14432000 6303700 13181000 0 0 7082600 4910800 0 1256 185 1104 7765;7766;7767;7768;7769 5057;5058 5057 69 2 DKYDYMQR Oxidation (M) 1133.4812 0.48115861 1134 Karp_00400 yes yes 0 0 1 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 22.282 22.59 3 0.0074678 4389 20181213_JW_Orientia_Karp_2_3 137.9 89.148 8322300 0 2600500 664350 2428600 1386600 829880 412370 0 1257 1134 1105 7770;7771;7772;7773;7774;7775 5059;5060 5060 668 2 DLAEDAPWK Unmodified 1043.4924 0.49237523 1520;1615;1797 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98;O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.013 53.263 2 0.0006652 20952 20181213_JW_Orientia_Karp_1_2 152.63 93.385 245030000 29774000 126720000 47739000 15768000 6831800 18202000 0 0 1258 1615;1520;1797 1106 7776;7777;7778;7779;7780;7781 5061;5062;5063;5064;5065;5066;5067 5063 7 DLAEDAPWKK Unmodified 1171.5873 0.58733824 1520;1615;1797 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98;O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 0 0 0 1 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 42.191 42.571 2 0.032585 14246 20181213_JW_Orientia_Karp_1_2 98.582 33.33 72302000 0 25056000 27534000 3218600 0 971820 15522000 0 1259 1615;1520;1797 1107 7782;7783;7784;7785;7786 5068;5069;5070 5069 3 DLAEITTLDR Unmodified 1145.5928 0.59281755 1961 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 57.826 58.108 2 7.435E-05 24482 20181213_JW_Orientia_Karp_1_1 150.35 80.753 38210000 14568000 5844500 13560000 0 3065500 0 0 1172100 1260 1961 1108 7787;7788;7789;7790;7791 5071;5072;5073 5071 3 DLAFNILNNTIGLK Unmodified 1544.8562 0.85624288 1089 Karp_00229 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 75.134 75.152 2 5.4071E-12 35108 20181213_JW_Orientia_Karp_1_2 205.8 123.05 85237000 39240000 16105000 0 0 8235500 5441300 15368000 847920 1261 1089 1109 7792;7793;7794;7795;7796;7797;7798;7799 5074;5075;5076;5077;5078;5079;5080 5075 7 DLAFNILNNTIGLK Deamidation (NQ) 1545.8403 0.84025847 1089 Karp_00229 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 75.351 75.367 2 0.0019456 34863 20181213_JW_Orientia_Karp_1_3 134.38 51.737 30188000 11418000 4183300 7916500 2372700 0 1349300 2948100 0 1262 1089 1109 7800;7801;7802;7803;7804;7805 5081 5081 438 1 DLAGSIIGK Unmodified 872.49673 0.49673232 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;B4DFF1;B3KU16;S4R359 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 52.059 52.319 2 0.00087179 20693 20181213_JW_Orientia_Karp_1_1 133.58 35.059 106950000 52284000 20010000 0 16653000 2387100 15619000 0 0 1263 63 1110 7806;7807;7808;7809;7810 5082;5083;5084;5085 5082 4 DLAMLIIDCLNPILK Oxidation (M) 1756.9467 0.94671415 1369 Karp_01981 yes yes 0 0 1 0 By MS/MS By matching 1 1 79.217 79.216 2 0.041929 37341 20181213_JW_Orientia_Karp_1_1 66.267 33.209 5727100 4365900 0 1361200 0 0 0 0 0 1264 1369 1111 7811;7812 5086 5086 1 DLASIAR Unmodified 744.413 0.41300269 186 A0A024R9Q1;P07996;P07996-2;A0PJG0;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS 1 41.689 41.689 2 0.02652 14281 20181213_JW_Orientia_Karp_1_1 94.006 0 27591000 27591000 0 0 0 0 0 0 0 + 1265 186 1112 7813 5087 5087 1 DLASVQALLR Unmodified 1084.6241 0.6240581 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 65.846 66.039 2 7.2973E-06 28732 20181213_JW_Orientia_Karp_1_3 166.07 64.524 29391000 10785000 0 2899000 0 4182600 1777700 4812700 4933800 1266 316 1113 7814;7815;7816;7817;7818;7819;7820 5088;5089;5090;5091;5092;5093;5094 5090 7 DLATDLSLIEVK Unmodified 1315.7235 0.72349737 82 A0A024R407;A0A024R3Z1;P11137-3;P11137;Q6NYC5 MAP2 Microtubule-associated protein;Microtubule-associated protein 2 yes no 0 0 0 0 By MS/MS 1 73.341 73.391 2 0.011452 27190 20181213_JW_Orientia_Karp_3_1 111.27 55.804 0 0 0 0 0 0 0 0 0 1267 82 1114 7821 5095 5095 1 DLAVAGPEMQVK Unmodified 1256.6435 0.64347291 1800 X5D7K9;X5DNU0;X5D2M8;Q14764;B4DP93;B4DXN0;B4DDR2 MVP Major vault protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 52.58 52.755 2 0.0066474 20541 20181213_JW_Orientia_Karp_1_2 103.22 49.538 42288000 23102000 8392700 8640100 0 2153800 0 0 0 1268 1800 1115 7822;7823;7824;7825 5096;5097 5097 2 DLDDFQSWLSR Unmodified 1380.631 0.63099397 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 2 1 73.68 73.704 2 0.00061093 33855 20181213_JW_Orientia_Karp_1_3 136.5 84.972 18848000 0 7820900 11028000 0 0 0 0 0 1269 506 1116 7826;7827;7828;7829 5098;5099;5100;5101 5101 4 DLDEDELLGNLSETELK Unmodified 1931.9211 0.92114714 1845 Q5HYL6;Q9NYL9;H0YNU8 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 72.896 72.995 2 7.7757E-09 29443 20181213_JW_Orientia_Karp_2_2 173.59 120.58 42200000 0 0 0 17923000 24277000 0 0 0 1270 1845 1117 7830;7831 5102;5103 5103 2 DLDFSHLAALAR Unmodified 1327.6884 0.68844927 1062 Karp_00006 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 65.587 65.761 3 0.0016412 28849 20181213_JW_Orientia_Karp_1_2 143.97 43.888 0 0 0 0 0 0 0 0 0 1271 1062 1118 7832;7833 5104;5105 5104 2 DLDIIDNYDYSHTVK Unmodified 1809.8421 0.84210896 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 57.377 57.689 2;3 1.6961E-38 23797 20181213_JW_Orientia_Karp_1_2 249.69 162.12 390010000 204250000 66060000 106260000 3579300 0 0 129840 9734200 1272 1520 1119 7834;7835;7836;7837;7838;7839;7840;7841;7842 5106;5107;5108 5107 3 DLDQASLAAVSQQLAPR Unmodified 1781.9272 0.92717599 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 67.529 67.832 2;3 9.1882E-05 23917 20181213_JW_Orientia_Karp_3_1 143.93 95.485 32353000 0 7701100 15066000 0 0 0 5562200 4023900 1273 2016 1120 7843;7844;7845;7846;7847 5109;5110;5111 5111 3 DLDSLHR Unmodified 854.42463 0.42463001 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 28.498 28.82 2 0.015622 7774 20181213_JW_Orientia_Karp_1_1 110.63 9.3491 66092000 21759000 17624000 14552000 532160 2041400 2998300 6584800 0 1274 25 1121 7848;7849;7850;7851;7852;7853;7854 5112;5113;5114 5112 3 DLEAEHVEVEDTTLNR Unmodified 1868.8752 0.8752 1973 Q9H3K6-2;Q9H3K6;H3BV85;H3BTW0;H3BVE0 BOLA2;BOLA2B BolA-like protein 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 46.982 47.309 3 0.00030727 16050 20181213_JW_Orientia_Karp_2_1 130.24 91.093 31450000 11330000 0 0 6674100 0 6885100 0 6560800 1275 1973 1122 7855;7856;7857;7858 5115;5116 5115 2 DLEAHIDSANK Unmodified 1211.5782 0.57823012 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 32.094 32.417 2;3 0.00027736 9517 20181213_JW_Orientia_Karp_1_1 151.22 92.62 192300000 86214000 72140000 25165000 1361000 0 0 6185200 1239700 1276 47 1123 7859;7860;7861;7862;7863;7864;7865;7866;7867;7868;7869 5117;5118;5119;5120;5121 5117 5 DLEALLNSK Unmodified 1001.5393 0.53932542 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.77 60.02 2 0.00022157 25303 20181213_JW_Orientia_Karp_1_2 181.41 104.09 94116000 30779000 15009000 15301000 3635200 14861000 14531000 0 0 1277 1543;1544;1851 1124 7870;7871;7872;7873;7874;7875;7876 5122;5123;5124;5125;5126;5127;5128 5123 7 DLEALLNSK Deamidation (NQ) 1002.5233 0.523341 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 60.178 60.345 2 0.0032087 23331 20181213_JW_Orientia_Karp_2_3 120.99 28.549 18476000 8985800 0 0 0 4231300 5258400 0 0 1278 1543;1544;1851 1124 7877;7878;7879;7880;7881 5129;5130;5131;5132;5133 5133 1026 5 DLEAQIEAANK Unmodified 1200.5986 0.59863121 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 47.428 47.855 2 0.00026173 17296 20181213_JW_Orientia_Karp_1_2 152.07 56.495 32116000 0 13820000 12200000 2333300 0 0 0 3762500 1279 944 1125 7882;7883;7884;7885 5134;5135;5136;5137 5135 4 DLEDLFYK Unmodified 1041.5019 0.50187728 352 H0YIB4;S4R3G0;B4DFT9;A8K3M9;Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.789 67.919 2 0.0086706 30437 20181213_JW_Orientia_Karp_1_1 108.09 56.752 14573000 2701400 389600 5096400 0 3832000 2553700 0 0 1280 352 1126 7886;7887;7888;7889;7890 5138;5139;5140;5141 5138 4 DLEDSLAR Unmodified 917.44543 0.44542503 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 44.131 44.465 2 0.0042726 15752 20181213_JW_Orientia_Karp_1_1 133.6 46.806 34362000 22635000 10889000 0 0 0 0 838350 0 1281 1543;1544;1851 1127 7891;7892;7893;7894 5142;5143 5142 2 DLEEAGGLGTEFSELPGK Unmodified 1847.8789 0.8788884 839 D3DVC4;P48681;Q2YDX4 NES Nestin no no 0 0 0 0 By matching By MS/MS By matching 1 1 1 66.594 66.71 2 0.00025857 29261 20181213_JW_Orientia_Karp_1_3 131.35 78.339 46609000 16316000 0 22889000 7404700 0 0 0 0 1282 839 1128 7895;7896;7897 5144 5144 1 DLEGENIEIVFAKPPDQK Unmodified 2041.0368 0.036786022 475 Q05CK9;B2R8Z8;O60506-4;O60506-3;O60506-2;O60506;Q59GL1;B7Z645;O60506-5;B7Z213 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 62.341 62.491 3 0.019508 27186 20181213_JW_Orientia_Karp_1_1 82.59 47.661 71635000 40467000 0 10889000 0 9851600 10428000 0 0 1283 475 1129 7898;7899;7900;7901 5145 5145 1 DLEGLCHSGHLGWEK Unmodified 1736.7941 0.79405333 1095 Karp_00244 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 44.1 44.367 3 0.015671 15352 20181213_JW_Orientia_Karp_1_2 98.253 54.871 245100000 78666000 65405000 54988000 0 5884300 9497500 30658000 0 1284 1095 1130 7902;7903;7904;7905;7906;7907 5146;5147;5148;5149 5147 4 DLEGLSQR Unmodified 916.46141 0.46140945 47 A0A024R1N1;P35579 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 38.981 39.251 2 0.0041745 12440 20181213_JW_Orientia_Karp_1_3 143.89 35.799 166990000 47809000 59640000 55116000 0 3332400 0 1094600 0 1285 47 1131 7908;7909;7910;7911;7912 5150;5151;5152;5153 5152 4 DLEIIEQEMQDIITK Oxidation (M) 1832.9077 0.90774568 1376 Karp_02113 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 66.874 67.086 2 3.099E-05 29620 20181213_JW_Orientia_Karp_1_2 159.66 98.444 30442000 15211000 4369100 0 4231200 3495800 0 0 3134800 1286 1376 1132 7913;7914;7915;7916;7917 5154;5155;5156 5155 969 3 DLEIIEQEMQDIITK Unmodified 1816.9128 0.91283106 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.344 76.338 2 5.9824E-20 35533 20181213_JW_Orientia_Karp_1_3 223.36 125.58 240890000 44245000 66236000 62550000 11948000 11860000 9264800 28855000 5930700 1287 1376 1132 7918;7919;7920;7921;7922;7923;7924;7925 5157;5158;5159;5160;5161;5162;5163;5164;5165 5160 9 DLESLFHR Unmodified 1015.5087 0.50869399 1044 J9JID7;Q03252 LMNB2 Lamin-B2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.781 53.106 2 0.0059101 19203 20181213_JW_Orientia_Karp_2_1 116.9 48.117 104780000 25315000 53151000 0 8897500 7513100 9190500 714530 0 1288 1044 1133 7926;7927;7928;7929;7930;7931;7932 5166;5167;5168;5169;5170;5171 5169 6 DLFEDELVPLFEK Unmodified 1592.7974 0.7973906 475 Q05CK9;B2R8Z8;O60506-4;O60506-3;O60506-2;O60506;Q59GL1;B7Z645;F6UXX1;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.892 76.892 2 3.97E-07 36220 20181213_JW_Orientia_Karp_1_1 181.31 98.668 123630000 48162000 24888000 5789900 9104400 8263500 0 24608000 2817600 1289 475 1134 7933;7934;7935;7936;7937;7938;7939;7940 5172;5173;5174;5175;5176;5177;5178 5172 7 DLFQVIYNVK Unmodified 1237.6707 0.67067394 29 B2RAW0;A0A024R036;P98082-2;P98082-3;P98082 DAB2 Disabled homolog 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 72.54 72.614 2 0.00025979 26706 20181213_JW_Orientia_Karp_3_1 143.03 86.118 8161300 0 0 4215200 0 0 0 3946100 0 1290 29 1135 7941;7942 5179;5180 5180 2 DLGAYLR Unmodified 806.42865 0.42865276 1850 Q5TAQ0;V5IRT4;Q9BRT2 UQCC2 Ubiquinol-cytochrome-c reductase complex assembly factor 2 yes no 0 0 0 0 By MS/MS 1 51.321 51.87 2 0.033742 18553 20181213_JW_Orientia_Karp_2_1 86.866 11.556 2236000 0 0 0 2236000 0 0 0 0 1291 1850 1136 7943 5181 5181 1 DLGEEHFK Unmodified 973.45051 0.45051041 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 30.553 30.934 2 0.0070035 7279 20181213_JW_Orientia_Karp_2_2 113.41 67.46 647940000 192480000 146340000 0 84688000 111570000 0 112850000 0 + 1292 792 1137 7944;7945;7946;7947;7948;7949 5182;5183;5184;5185 5184 4 DLGEELEALK Unmodified 1115.571 0.57101948 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 3 62.008 62.336 2 1.6442E-06 26867 20181213_JW_Orientia_Karp_1_2 181.55 82.967 84200000 38111000 28100000 0 798960 0 10714000 0 6475800 1293 47 1138 7950;7951;7952;7953;7954;7955;7956;7957 5186;5187;5188;5189;5190;5191;5192;5193 5187 8 DLGEENFK Unmodified 950.43453 0.434526 620 F6KPG5;CON__P02768-1;B4DPP6;P02768;Q56G89;B2RBS8;B7WNR0;B4DPR2;Q8IUK7;C9JKR2;P02768-2;H7C013 ALB Serum albumin yes no 0 0 0 0 By MS/MS 1 39.938 39.938 2 0.042273 13341 20181213_JW_Orientia_Karp_1_1 75.738 29.722 67193000 67193000 0 0 0 0 0 0 0 + 1294 620 1139 7958 5194 5194 1 DLGLENIGIK Unmodified 1070.5972 0.59717465 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 63.232 63.465 2 1.0715E-06 27087 20181213_JW_Orientia_Karp_1_3 186.41 114.7 74391000 0 16144000 44003000 0 0 14244000 0 0 1295 1066 1140 7959;7960;7961;7962;7963;7964;7965;7966 5195;5196;5197;5198;5199;5200;5201 5197 7 DLGLSESGEDVNAAILDESGK Unmodified 2117.9964 0.99643735 1594 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 66.378 66.54 2 0.00070974 29287 20181213_JW_Orientia_Karp_1_2 111.34 65.186 25261000 11436000 5337300 5239000 0 0 1911200 0 1337600 1296 1594 1141 7967;7968;7969;7970;7971;7972 5202;5203;5204 5203 3 DLIALITR Unmodified 913.55967 0.55966693 1430 Karp_02387 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 70.042 70.042 2 0.0061147 31775 20181213_JW_Orientia_Karp_1_1 116.25 55.49 13803000 13803000 0 0 0 0 0 0 0 1297 1430 1142 7973;7974 5205;5206 5205 2 DLIGVQNLLK Unmodified 1111.6601 0.66010926 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.675 68.837 2 0.00049024 31042 20181213_JW_Orientia_Karp_1_1 134.77 80.043 22879000 7193400 0 7622300 0 2312000 3647800 0 2103100 1298 316 1143 7975;7976;7977;7978;7979;7980;7981 5207;5208;5209;5210;5211;5212 5207 6 DLISHDEMFSDIYK Oxidation (M) 1727.7713 0.7712522 1595 Q5W0H4;P13693;Q9UP43;B4DKJ4;B4DLD6 TPT1 Translationally-controlled tumor protein yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 54.84 55.12 3 0.025556 20280 20181213_JW_Orientia_Karp_2_1 81.278 34.481 35422000 5425500 5393600 0 6900000 8729900 8972700 0 0 1299 1595 1144 7982;7983;7984;7985;7986 5213 5213 1217 0 DLLAVVFYGTEK Unmodified 1353.718 0.71801807 48 A0A024R1N4;P12956;B1AHC9;B2RDN9 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 74.851 74.866 2 0.0013762 34870 20181213_JW_Orientia_Karp_1_1 144.17 89.564 21452000 6415200 6322200 8714800 0 0 0 0 0 1300 48 1145 7987;7988;7989 5214;5215;5216;5217 5214 4 DLLDDLK Unmodified 830.43855 0.43854874 1573 V9HWE0;P08758;E9PHT9;B4DNG6 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 60.72 61.061 2 0.022664 22460 20181213_JW_Orientia_Karp_3_2 98.997 0 25779000 0 6644400 0 0 4501400 6430800 0 8202700 1301 1573 1146 7990;7991;7992;7993 5218;5219 5219 2 DLLEVADVLEK Unmodified 1242.6707 0.67073352 652 B4DWV5;Q9HAV7 GRPEL1 GrpE protein homolog;GrpE protein homolog 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 73.223 73.273 2 4.9289E-05 29608 20181213_JW_Orientia_Karp_2_2 163.66 89.49 70956000 17760000 8336800 15984000 0 5474000 3951100 19450000 0 1302 652 1147 7994;7995;7996;7997;7998;7999 5220;5221;5222;5223 5222 4 DLLGETLAQLIR Unmodified 1340.7664 0.76636524 559 B4DND4;B4DEL3;P36269-2;P36269;P36269-3 GGT5 Gamma-glutamyltransferase 5;Gamma-glutamyltransferase 5 heavy chain;Gamma-glutamyltransferase 5 light chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 77.154 77.137 2 0.00020529 36478 20181213_JW_Orientia_Karp_1_2 159.83 76.046 27800000 13293000 4746100 4027900 0 1514700 1179900 3038500 0 1303 559 1148 8000;8001;8002;8003;8004;8005 5224;5225;5226 5225 3 DLLLDPAWEK Unmodified 1198.6234 0.6233894 1509;133 O43707;O43707-2;F5GXS2;O43707-3;B4E337;B4DSX0;K7EP19;D6RH00;B3W6H3;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;P35609-2;P35609;B2R8Y4;Q08043;B7Z4V1 ACTN4;ACTN3;ACTN4-MLL;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.569 68.776 2 0.00034122 30760 20181213_JW_Orientia_Karp_1_2 140.11 85.336 218400000 48275000 37533000 62446000 3508500 16002000 12358000 21395000 16879000 1304 1509;133 1149 8006;8007;8008;8009;8010;8011;8012;8013 5227;5228;5229;5230;5231;5232;5233;5234;5235;5236 5229 10 DLLLTSSYLSDSGSTGEHTK Unmodified 2110.0066 0.0066081055 687 B4E2Z3;F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;A0A024R599;H0YFX4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 55.918 56.326 3 0.031176 20887 20181213_JW_Orientia_Karp_2_2 47.568 14.573 62828000 0 21386000 22240000 3518100 10352000 3582500 1265900 483880 1305 687 1150 8014;8015;8016;8017;8018;8019;8020 5237 5237 1 DLLQSSYNKQR 2 Deamidation (NQ) 1352.6572 0.65720872 1697 V9GYJ3;V9GY11;V9GZ03;V9GYJ9;V9GYL9;P51398-2;P51398-3;P51398 DAP3 28S ribosomal protein S29, mitochondrial yes no 0 2 0 1 By MS/MS By matching 1 1 44.343 44.723 3 0.028516 15046 20181213_JW_Orientia_Karp_2_3 79.489 12.104 4709400 0 0 0 0 0 4473000 0 236340 1306 1697 1151 8021;8022 5238 5238 1125;1957 1 DLMVGDEASELR Oxidation (M) 1349.6133 0.613295 1721 P61160;B4DHK9 ACTR2 Actin-related protein 2 yes no 0 0 1 0 By MS/MS By matching 1 1 49.803 49.978 2 0.035774 19219 20181213_JW_Orientia_Karp_1_1 72.289 21.197 24760000 9931200 14829000 0 0 0 0 0 0 1307 1721 1152 8023;8024 5239 5239 1 DLMVGDEASELR Unmodified 1333.6184 0.61838038 1721 P61160;B4DHK9 ACTR2 Actin-related protein 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 55.248 55.431 2 0.005086 22388 20181213_JW_Orientia_Karp_1_2 108.31 63.291 31361000 13423000 6778100 11160000 0 0 0 0 0 1308 1721 1152 8025;8026;8027 5240;5241 5240 1 DLMVLNDVYR Unmodified 1236.6173 0.61725816 234 A0A024RC61;Q59E93;P15144;B4DV63;H0YMC1 ANPEP Aminopeptidase N yes no 0 0 0 0 By MS/MS 1 65.383 65.482 2 0.0072762 28397 20181213_JW_Orientia_Karp_1_3 95.573 67.831 1945600 0 0 1945600 0 0 0 0 0 1309 234 1153 8028 5242 5242 1 DLNTATRMTAQNAMTKALL 2 Oxidation (M);2 Deamidation (NQ) 2097.0082 0.0082047849 992 H3BVF2;H3BQA9 STOML1 yes no 0 2 2 2 By MS/MS By matching By matching 1 1 1 52.202 52.54 3 0.0062899 18881 20181213_JW_Orientia_Karp_2_2 82.59 21.18 50656000 0 0 0 0 30174000 19383000 0 1099200 1310 992 1154 8029;8030;8031 5243 5243 352;1751 545;546 1 DLPLLLFR Unmodified 985.59605 0.59605244 1505 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q9UMY3;Q8N5M8;Q96RV7;Q96RV6 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 0 0 0 0 By matching By MS/MS 1 1 75.518 75.543 2 0.0058298 35181 20181213_JW_Orientia_Karp_1_2 117.16 77.057 12970000 1381400 11589000 0 0 0 0 0 0 1311 1505 1155 8032;8033 5244 5244 1 DLQFVEVTDVK Unmodified 1291.666 0.66598249 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 62.514 62.783 2 1.1708E-07 27346 20181213_JW_Orientia_Karp_1_1 192.44 98.845 173820000 90030000 40492000 0 1939500 19069000 11330000 0 10959000 1312 85 1156 8034;8035;8036;8037;8038;8039;8040 5245;5246;5247;5248;5249 5245 5 DLQLVLPDYFPER Unmodified 1603.8246 0.8246084 548 B3KY04;Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 74.702 74.726 2 0.028078 34747 20181213_JW_Orientia_Karp_1_1 80.69 35.613 44453000 18395000 10852000 14935000 271320 0 0 0 0 1313 548 1157 8041;8042;8043;8044 5250;5251 5250 2 DLQNFLK Unmodified 876.47052 0.47051757 446 B2R4M6;P06702 S100A9 Protein S100;Protein S100-A9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 55.566 55.733 2 0.012441 20832 20181213_JW_Orientia_Karp_2_3 117.16 26.174 14613000 2635100 0 0 0 2879200 9099200 0 0 1314 446 1158 8045;8046;8047 5252;5253;5254 5254 3 DLQQQLVDAK Unmodified 1156.6088 0.60880197 1664 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 46.669 46.844 2 0.012546 16742 20181213_JW_Orientia_Karp_1_2 88.681 46.286 23169000 7931200 8225000 5861100 0 1151300 0 0 0 1315 1664 1159 8048;8049;8050;8051 5255 5255 1 DLQVAVSSTMLNSER Oxidation (M) 1664.8039 0.80394931 1107 Karp_00285 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 3 1 2 2 3 1 51.435 51.76 2 3.7496E-179 19838 20181213_JW_Orientia_Karp_1_2 364.53 297.61 3159200000 700640000 638060000 572700000 283200000 268580000 347810000 302580000 45652000 1316 1107 1160 8052;8053;8054;8055;8056;8057;8058;8059;8060;8061;8062;8063;8064;8065;8066;8067 5256;5257;5258;5259;5260;5261;5262;5263 5258 626 8 DLQVAVSSTMLNSER Oxidation (M);Deamidation (NQ) 1665.788 0.7879649 1107 Karp_00285 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1 2 54.165 54.55 2 2.7105E-62 19904 20181213_JW_Orientia_Karp_2_1 278.93 211.82 990330000 311720000 271410000 167080000 72190000 64627000 66672000 277970 36361000 1317 1107 1160 8068;8069;8070;8071;8072;8073;8074;8075;8076;8077 5264;5265;5266;5267;5268;5269;5270;5271;5272;5273 5269 462 626 10 DLQVAVSSTMLNSER Unmodified 1648.809 0.80903469 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 59.477 59.77 2 1.93E-62 25123 20181213_JW_Orientia_Karp_1_2 325.57 249.92 1777200000 380550000 264720000 609260000 76698000 167590000 135620000 142720000 0 1318 1107 1160 8078;8079;8080;8081;8082;8083;8084;8085 5274;5275;5276;5277;5278;5279;5280;5281;5282;5283 5276 10 DLQVAVSSTMLNSER Deamidation (NQ) 1649.7931 0.79305028 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 61.549 61.857 2 5.2425E-49 26463 20181213_JW_Orientia_Karp_1_2 267.77 207.67 632320000 228080000 107890000 159080000 16735000 50102000 42685000 8569100 19172000 1319 1107 1160 8086;8087;8088;8089;8090;8091;8092;8093 5284;5285;5286;5287;5288;5289;5290;5291;5292;5293;5294 5285 462 11 DLSAAGIGLLAAATQSLSMPASLGR Oxidation (M) 2386.2526 0.25260923 418 D6REM6;A8MXP9;P43243;D6R991;Q68D11;D6R8Z5;D6RB45;D6RGW7;D6R9F3;D6RBS2;D6RCM3;D6REK4 MATR3;DKFZp686K23100 Matrin-3 yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 77.735 77.717 3 0.0015216 29463 20181213_JW_Orientia_Karp_3_1 88.04 60.517 16407000 7856500 0 3302200 0 0 0 5248300 0 1320 418 1161 8094;8095;8096 5295 5295 283 1 DLSFENPDPINSLFK Unmodified 1734.8465 0.84646606 1453 Karp_02590 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 74.698 74.727 2 3.2348E-37 34748 20181213_JW_Orientia_Karp_1_2 244.72 167.18 359550000 98453000 71337000 82821000 12391000 0 13291000 59199000 22060000 1321 1453 1162 8097;8098;8099;8100;8101;8102;8103 5296;5297;5298;5299;5300;5301;5302 5297 7 DLSFENPDPINSLFK Deamidation (NQ) 1735.8305 0.83048164 1453 Karp_02590 yes yes 0 1 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 76.128 76.109 2 0.001217 28668 20181213_JW_Orientia_Karp_3_1 137.95 63.027 23482000 0 0 0 2447400 3257000 2892100 9682600 5202700 1322 1453 1162 8104;8105;8106;8107;8108 5303 5303 983 1 DLSFSEVTSYGFK Unmodified 1478.6929 0.69292553 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 68.466 68.676 2 0.0020256 30914 20181213_JW_Orientia_Karp_1_1 126.19 73.947 17378000 4589100 2525600 4269200 0 0 1083300 2992000 1918300 1323 852 1163 8109;8110;8111;8112;8113;8114 5304;5305 5304 2 DLSLEEIQK Unmodified 1073.5605 0.56045479 282 A2A2D0;B5BU83;P16949;P16949-2;Q59G27;B7Z4K3;E5RGX5;B7Z4N6;Q93045;Q93045-2 STMN1;STMN2 Stathmin;Stathmin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.926 52.284 2 7.1697E-06 18964 20181213_JW_Orientia_Karp_2_3 199.02 76.832 132800000 0 11314000 5042500 44318000 28271000 42458000 1394500 0 1324 282 1164 8115;8116;8117;8118;8119;8120;8121 5306;5307;5308;5309;5310;5311 5311 6 DLSNQELVALR Deamidation (NQ) 1257.6565 0.65648044 1221 Karp_00888 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 59.635 59.928 2 9.6939E-07 25243 20181213_JW_Orientia_Karp_1_2 181.87 98.868 40456000 21647000 5311000 7088400 2169300 2994300 0 0 1246700 1325 1221 1165 8122;8123;8124;8125;8126;8127 5312;5313;5314;5315 5313 626 4 DLSNQELVALR Unmodified 1256.6725 0.67246486 1221 Karp_00888 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 56.755 57.113 2 7.1639E-13 20037 20181213_JW_Orientia_Karp_3_2 201.84 113.67 1056700000 273030000 274980000 267720000 15616000 96618000 111500000 11936000 5259100 1326 1221 1165 8128;8129;8130;8131;8132;8133;8134;8135 5316;5317;5318 5318 2 DLSSVQTLLTK Unmodified 1203.6711 0.67106787 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16;Q14917 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 62.606 62.794 2 0.00037866 24224 20181213_JW_Orientia_Karp_2_2 160.77 69.504 17360000 8553000 2495900 0 0 3368300 2942900 0 0 1327 316 1166 8136;8137;8138;8139 5319;5320;5321 5319 2 DLSTVEALQNLK Unmodified 1329.714 0.71399532 907 E9PPH5;Q53F20;Q9BTT0-3;Q9BTT0 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 61.443 61.778 2 3.0137E-11 26166 20181213_JW_Orientia_Karp_1_3 201.84 99.783 18979000 0 5980900 4127300 0 3156400 3348000 264450 2102100 1328 907 1167 8140;8141;8142;8143;8144;8145 5322;5323;5324 5323 1 DLTALSNMLPK Oxidation (M) 1217.6326 0.63257388 234 A0A024RC61;Q59E93;P15144;H0YLZ8 ANPEP Aminopeptidase N yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 58.505 58.705 2 2.0037E-05 24832 20181213_JW_Orientia_Karp_1_1 167.12 102.7 32018000 14145000 6175900 8327200 0 0 3370300 0 0 1329 234 1168 8146;8147;8148;8149 5325;5326 5325 173 2 DLTALSNMLPK Unmodified 1201.6377 0.63765925 234 A0A024RC61;Q59E93;P15144;H0YLZ8 ANPEP Aminopeptidase N yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1 70.694 70.813 2 7.2802E-06 32210 20181213_JW_Orientia_Karp_1_2 176.38 92.513 18968000 0 7010000 5925100 0 1644600 1047100 3340800 0 1330 234 1168 8150;8151;8152;8153;8154;8155;8156 5327;5328;5329;5330 5328 4 DLTDGHFENILADNSVNDQTK 3 Deamidation (NQ) 2348.0292 0.029194041 68 B4DWS9;A0A024R2B6;P36952-2;P36952 SERPINB5 Serpin B5 yes no 0 3 0 0 By matching By matching By matching By MS/MS 1 1 1 1 29.194 29.597 3 0.03335 6600 20181213_JW_Orientia_Karp_3_2 51.225 21.876 329700000 0 148770000 90265000 0 36647000 0 0 54014000 1331 68 1169 8157;8158;8159;8160 5331 5331 1274 1 DLTDTIFSSK Unmodified 1125.5554 0.55536941 1418 Karp_02255 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 61.894 62.093 2 0.00042669 26730 20181213_JW_Orientia_Karp_1_2 137.05 85.979 11860000 3197100 2680200 2622000 0 3360300 0 0 0 1332 1418 1170 8161;8162;8163;8164;8165 5332;5333;5334;5335 5333 4 DLTDYLMK Unmodified 997.47903 0.47903335 1717;1743;351;1836 B7Z6P1;A8K3K1;P68133;P68032;D2JYH4;P63267;P62736;Q5T8M7;B3KUD3;B3KW67;Q13707;B4DUI8;P63267-2;K4EQ44;K4EP00;K4ENJ5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;A0AUL6;P63261;B4E3A4;I3L3I0;I3L1U9;I3L4N8;Q562R1 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;HEL-176;ACTBL2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 64.357 64.495 2 0.0068541 25362 20181213_JW_Orientia_Karp_2_3 113.89 40.273 204530000 107680000 66441000 0 0 16792000 13624000 0 0 1333 351;1717;1743;1836 1171 8166;8167;8168;8169;8170;8171 5336;5337;5338;5339;5340 5339 5 DLTDYLMK Oxidation (M) 1013.4739 0.47394797 1717;1743;351;1836 B7Z6P1;A8K3K1;P68133;P68032;D2JYH4;P63267;P62736;Q5T8M7;B3KUD3;B3KW67;Q13707;B4DUI8;P63267-2;K4EQ44;K4EP00;K4ENJ5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;A0AUL6;P63261;B4E3A4;I3L3I0;I3L1U9;I3L4N8;Q562R1 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;HEL-176;ACTBL2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.039 56.354 2 0.0039123 22574 20181213_JW_Orientia_Karp_1_3 127.12 53.501 774200000 242510000 78709000 211010000 19584000 71785000 150500000 0 99969 1334 351;1717;1743;1836 1171 8172;8173;8174;8175;8176;8177;8178 5341;5342;5343;5344;5345 5342 239 5 DLTEYLSR Unmodified 995.49238 0.49237523 258 B4DTA2;A0A024RDF6;O14979-3;O14979-2;O14979 HNRPDL;HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.664 55.934 2 0.004443 20872 20181213_JW_Orientia_Karp_2_1 131.03 65.785 57177000 27762000 7848400 13793000 2317800 5455600 0 0 0 1335 258 1172 8179;8180;8181;8182;8183;8184 5346;5347;5348;5349;5350 5348 5 DLTFEYEYNK Unmodified 1320.5874 0.58739782 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 55.666 56.024 2 1.3266E-24 22392 20181213_JW_Orientia_Karp_1_3 249.93 200.87 265230000 83081000 55430000 49382000 14343000 18681000 23246000 20795000 273180 1336 1395 1173 8185;8186;8187;8188;8189;8190;8191;8192 5351;5352;5353;5354;5355;5356;5357;5358 5353 8 DLTFEYEYNKPNSLFK Deamidation (NQ) 2007.9466 0.94657403 1395 Karp_02151 yes yes 0 1 0 1 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 63.718 63.94 3 0.0012554 24363 20181213_JW_Orientia_Karp_3_2 131.53 84.642 102450000 62105000 16110000 19272000 936740 0 0 0 4022000 1337 1395 1174 8193;8194;8195;8196;8197 5359;5360;5361 5361 895 2 DLTFEYEYNKPNSLFK Unmodified 2006.9626 0.96255845 1395 Karp_02151 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 60.318 60.62 2;3 1.3067E-36 21006 20181213_JW_Orientia_Karp_3_1 251.91 206.02 166570000 32067000 26337000 2955600 0 38088000 40706000 8671100 17746000 1338 1395 1174 8198;8199;8200;8201;8202;8203;8204 5362;5363;5364 5364 3 DLTLDQAYSYAVENAK Unmodified 1799.8578 0.85775902 138 A0A024R6K8;P23381;P23381-2;G3V3H8;G3V3Y5 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By matching 1 1 66.712 66.836 2 0.031355 29791 20181213_JW_Orientia_Karp_1_1 75.483 42.985 23724000 15836000 7888400 0 0 0 0 0 0 1339 138 1175 8205;8206 5365 5365 1 DLTMDLSNYK Oxidation (M) 1214.5489 0.54890383 1253 Karp_00933 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.945 51.264 2 4.3789E-05 18179 20181213_JW_Orientia_Karp_2_1 155.07 103.72 42325000 10638000 13196000 0 7942400 3789300 6533900 0 225270 1340 1253 1176 8207;8208;8209;8210;8211;8212 5366;5367;5368;5369;5370;5371 5368 817 6 DLTMDLSNYK Unmodified 1198.554 0.5539892 1253 Karp_00933 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 57.412 57.623 2 0.02071 24167 20181213_JW_Orientia_Karp_1_1 83.647 40.205 28603000 11718000 4269800 6513600 0 2990100 3110700 0 0 1341 1253 1176 8213;8214;8215;8216;8217 5372 5372 1 DLTNVQNLQK Unmodified 1171.6197 0.619701 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 42.701 42.991 2 0.0083721 14482 20181213_JW_Orientia_Karp_1_2 96.342 43.175 43273000 23748000 7845300 5456200 0 0 603950 5619700 0 1342 316 1177 8218;8219;8220;8221;8222 5373;5374 5374 2 DLTSVNILLK Unmodified 1114.6598 0.6597749 506;1499 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2;O15020-2;O15020 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 67.541 67.755 2 3.3261E-05 29845 20181213_JW_Orientia_Karp_1_3 159.28 79.047 16996000 8550700 1469100 5714200 0 0 0 0 1262100 1343 506;1499 1178 8223;8224;8225;8226 5375;5376;5377 5377 3 DLTSWVTEMK Oxidation (M) 1224.5696 0.56963927 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 59.835 60.084 2 0.00020826 25378 20181213_JW_Orientia_Karp_1_2 143.37 88.651 14844000 4832900 4916900 2628100 531540 0 1935000 0 0 1344 316 1179 8227;8228;8229;8230;8231 5378;5379 5379 216 2 DLTSWVTEMK Unmodified 1208.5747 0.57472465 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 1 68.453 68.703 2 0.03602 30652 20181213_JW_Orientia_Karp_1_2 74.376 38.468 1299500 0 1299500 0 0 0 0 0 0 1345 316 1179 8232 5380 5380 1 DLVFNTESLPSVDNR Deamidation (NQ) 1705.8159 0.81589421 1883 Q70CQ2-3;Q70CQ2-2;Q70CQ2 USP34 Ubiquitin carboxyl-terminal hydrolase 34 yes no 0 1 0 0 By MS/MS By matching By matching 1 1 1 40.95 41.254 2 0.027207 12428 20181213_JW_Orientia_Karp_2_2 89.561 12.634 32564000 0 0 0 0 23682000 1643700 0 7238900 1346 1883 1180 8233;8234;8235 5381 5381 1190 1 DLYANTVLSGGSTMYPGIADR Oxidation (M) 2216.0419 0.041947754 1836 Q562R1 ACTBL2 Beta-actin-like protein 2 yes yes 0 0 1 0 By MS/MS By matching 1 1 72.206 72.329 2 0.022056 33185 20181213_JW_Orientia_Karp_1_2 115.58 57.468 56786000 0 33685000 23102000 0 0 0 0 0 1347 1836 1181 8236;8237 5382 5382 1464 0 DLYANTVLSGGTTMYPGIADR Oxidation (M) 2230.0576 0.057597819 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q96FU6;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9UE89;P63261;B4E3A4;B4DVQ0 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 1 2 66.368 66.559 2;3 1.1906E-150 25702 20181213_JW_Orientia_Karp_3_2 345.3 277.78 2413800000 1000600000 268960000 682140000 23004000 188030000 149610000 11171000 90349000 1348 1717;1743 1182 8238;8239;8240;8241;8242;8243;8244;8245;8246;8247;8248;8249;8250;8251;8252;8253;8254 5383;5384;5385;5386;5387;5388;5389;5390;5391;5392;5393;5394;5395 5395 1340 13 DLYANTVLSGGTTMYPGIADR Oxidation (M);Deamidation (NQ) 2231.0416 0.041613403 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q96FU6;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9UE89;P63261;B4E3A4;B4DVQ0 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 1 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 2 4 2 3 68.19 68.361 2;3 1.9452E-128 29778 20181213_JW_Orientia_Karp_1_3 320.06 271.78 333400000 88559000 47882000 89272000 4251500 33022000 28407000 21341000 20667000 1349 1717;1743 1182 8255;8256;8257;8258;8259;8260;8261;8262;8263;8264;8265;8266;8267;8268;8269;8270;8271;8272;8273;8274;8275;8276;8277 5396;5397;5398;5399;5400;5401;5402;5403;5404;5405;5406;5407;5408;5409;5410;5411 5404 1132 1340 15 DLYANTVLSGGTTMYPGIADR Unmodified 2214.0627 0.062683196 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q96FU6;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9UE89;P63261;B4E3A4;B4DVQ0 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 71.157 71.276 2 1.9903E-173 32465 20181213_JW_Orientia_Karp_1_2 406.55 351.26 1520700000 356670000 284120000 594030000 31484000 49141000 44635000 126640000 33989000 1350 1717;1743 1182 8278;8279;8280;8281;8282;8283;8284;8285;8286 5412;5413;5414;5415;5416;5417;5418;5419;5420;5421;5422 5414 11 DLYANTVLSGGTTMYPGIADR Deamidation (NQ) 2215.0467 0.046698781 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q96FU6;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9UE89;P63261;B4E3A4;B4DVQ0 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 1 72.291 72.372 2 1.7232E-28 32864 20181213_JW_Orientia_Karp_1_3 210.91 172.61 149470000 68755000 0 53456000 4165000 0 0 17795000 5295500 1351 1717;1743 1182 8287;8288;8289;8290;8291;8292 5423;5424;5425 5424 1132 3 DLYDAANVK Unmodified 1007.4924 0.49237523 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 43.822 44.132 2 0.00081303 14409 20181213_JW_Orientia_Karp_3_1 136.75 71.995 1685300000 508130000 540350000 404440000 0 0 46952000 183190000 2282000 1352 1375 1183 8293;8294;8295;8296;8297;8298;8299;8300;8301;8302;8303 5426;5427;5428;5429;5430;5431;5432 5431 7 DLYDAGVK Unmodified 879.4338 0.43379771 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;H0YM50;H0YNP5;B3KRQ1;H0YN28;H0YL33 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 2 2 1 41.544 41.89 1;2 0.0089188 14259 20181213_JW_Orientia_Karp_1_1 107.29 13.18 612090000 193150000 213780000 113020000 19691000 171000 7027400 52004000 13250000 1353 124 1184 8304;8305;8306;8307;8308;8309;8310;8311;8312;8313 5433;5434;5435 5433 2 DLYLENPEIK Unmodified 1232.6289 0.62886871 582 B4DIT7;V9HWG3;P21980;B4DTN7 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 55.926 56.303 2 3.0882E-05 22493 20181213_JW_Orientia_Karp_1_3 159.79 40.046 188240000 107810000 0 43543000 1376300 0 25740000 9432300 339110 1354 582 1185 8314;8315;8316;8317;8318;8319;8320 5436;5437;5438;5439;5440 5438 5 DMAIATGGAVFGEEGLTLNLEDVQPHDLGK Oxidation (M) 3112.5023 0.50229457 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;B7Z532 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 72.454 72.586 3 8.498E-06 32998 20181213_JW_Orientia_Karp_1_3 98.766 75.091 87131000 0 35725000 44535000 6870700 0 0 0 0 1355 81 1186 8321;8322;8323 5441 5441 89 1 DMAQLPETEIAPAK Oxidation (M) 1528.7443 0.74430917 879 E7EVA0;P27816;P27816-2;P27816-6;B4DM10;A0A024R2V2;A0A024R2S1 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 49.769 50.063 2 0.00064258 17576 20181213_JW_Orientia_Karp_2_2 140.45 104.12 118160000 14352000 0 41790000 19382000 11894000 23761000 0 6976500 1356 879 1187 8324;8325;8326;8327;8328;8329;8330 5442;5443;5444 5444 500 3 DMDFFPLSVYYR Unmodified 1551.7068 0.70680145 1127 Karp_00330 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 76.117 76.14 2 0.036745 35731 20181213_JW_Orientia_Karp_1_1 75.566 37.844 24239000 12769000 2727000 7483100 1260100 0 0 0 0 1357 1127 1188 8331;8332;8333;8334 5445 5445 1 DMEIAQTQK Oxidation (M) 1078.4965 0.49647433 879 E7EVA0;P27816;P27816-6;B4DM10;A0A024R2V0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 24.158 24.573 2 0.0075005 5201 20181213_JW_Orientia_Karp_2_1 96.034 35.235 1919800 0 0 0 519080 711460 313640 0 375610 1358 879 1189 8335;8336;8337;8338 5446;5447 5446 501 2 DMFQETMEAMR 3 Oxidation (M) 1435.5418 0.54178631 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 3 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.909 34.243 2 1.3384E-12 9969 20181213_JW_Orientia_Karp_1_3 211.86 178.12 68740000 22079000 14149000 17580000 2587000 3258600 0 9087600 0 1359 47 1190 8339;8340;8341;8342;8343;8344;8345 5448;5449;5450;5451;5452;5453;5454;5455 5450 33;34;35 8 DMFQETMEAMR 2 Oxidation (M) 1419.5469 0.54687169 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 3 3 3 2 1 1 2 3 43.189 43.51 2 0.00013252 14125 20181213_JW_Orientia_Karp_1_2 155.26 133.18 157370000 46849000 49730000 42324000 2065900 763840 2405400 10243000 2983800 1360 47 1190 8346;8347;8348;8349;8350;8351;8352;8353;8354;8355;8356;8357;8358;8359;8360;8361;8362;8363 5456;5457;5458;5459;5460;5461;5462;5463 5459 33;34;35 7 DMFQETMEAMR Oxidation (M) 1403.552 0.55195707 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 53.301 53.484 2 0.00012611 21163 20181213_JW_Orientia_Karp_1_2 158.08 113.33 88604000 33492000 26931000 28182000 0 0 0 0 0 1361 47 1190 8364;8365;8366 5464;5465;5466 5465 33;34;35 3 DMFQETMEAMR Unmodified 1387.557 0.55704245 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 64.455 64.571 2 0.00048586 27874 20181213_JW_Orientia_Karp_1_3 141.89 105.13 33346000 13464000 7704200 12178000 0 0 0 0 0 1362 47 1190 8367;8368;8369 5467;5468;5469 5469 3 DMGLSFTDDAISENINNDVK Oxidation (M) 2212.9794 0.97940708 1252 Karp_00931 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 65.302 65.497 2;3 4.0494E-110 28609 20181213_JW_Orientia_Karp_1_2 316.86 263.83 73436000 14889000 12509000 13901000 724760 13721000 7893800 9797500 0 1363 1252 1191 8370;8371;8372;8373;8374;8375;8376;8377;8378 5470;5471;5472;5473;5474;5475;5476;5477 5473 814 8 DMGLSFTDDAISENINNDVK Unmodified 2196.9845 0.98449245 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 70.504 70.613 2 0.00094032 32105 20181213_JW_Orientia_Karp_1_1 145.52 116.89 34194000 13713000 0 11037000 1457700 0 1955000 6030400 0 1364 1252 1191 8379;8380;8381;8382;8383 5478;5479 5478 2 DMGLSFTDDAISENINNDVK Deamidation (NQ) 2197.9685 0.96850804 1252 Karp_00931 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 71.895 72.016 2 1.9745E-22 32904 20181213_JW_Orientia_Karp_1_2 209.6 177.13 44734000 12822000 12441000 15745000 2255600 0 0 0 1470000 1365 1252 1191 8384;8385;8386;8387;8388 5480;5481;5482 5481 656;657 3 DMGLSFTDDAISENINNDVK Oxidation (M);Deamidation (NQ) 2213.9634 0.96342266 1252 Karp_00931 yes yes 0 1 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1 2 66.231 66.428 2;3 1.2324E-07 29188 20181213_JW_Orientia_Karp_1_2 160.63 131.41 54981000 16995000 8146400 20683000 205270 3565300 0 0 5386100 1366 1252 1191 8389;8390;8391;8392;8393;8394;8395;8396;8397 5483;5484;5485;5486 5483 656;657 814 3 DMGLSFTDDAISENINNDVK Oxidation (M);2 Deamidation (NQ) 2214.9474 0.94743825 1252 Karp_00931 yes yes 0 2 1 0 By MS/MS By matching By MS/MS 1 1 1 68.245 68.565 2 0.002832 26923 20181213_JW_Orientia_Karp_3_2 100.11 64.815 7545300 0 0 4422900 0 0 0 1678000 1444400 1367 1252 1191 8398;8399;8400 5487;5488 5488 656;657 814 1 DMIILPEMVGSMVGVYNGK 2 Oxidation (M);Deamidation (NQ) 2084.9832 0.98323559 1048 S4R456;K7EM56;K7EJ78;K7EQJ5;K7ELC2;P62841 RPS15 40S ribosomal protein S15 yes no 0 1 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 73.02 73.104 2 0.00025709 33523 20181213_JW_Orientia_Karp_1_3 120.14 73.097 51621000 12836000 13930000 19207000 0 0 0 0 5647300 1368 1048 1192 8401;8402;8403;8404;8405;8406;8407 5489;5490;5491;5492 5491 387 570;571;572 4 DMIILPEMVGSMVGVYNGK Deamidation (NQ) 2052.9934 0.99340634 1048 S4R456;K7EM56;K7EJ78;K7EQJ5;K7ELC2;P62841 RPS15 40S ribosomal protein S15 yes no 0 1 0 0 By MS/MS By MS/MS 1 1 77.771 77.795 2 0.00026985 36926 20181213_JW_Orientia_Karp_1_2 131.66 102.36 19392000 12235000 7157200 0 0 0 0 0 0 1369 1048 1192 8408;8409 5493;5494 5494 387 2 DMKDEEKEQQLTMK Oxidation (M);Deamidation (NQ) 1768.7859 0.78591599 659 B4DXQ2;Q5VVM6 CCDC30 Coiled-coil domain-containing protein 30 yes no 0 1 1 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 49.055 49.399 2 0.040776 18750 20181213_JW_Orientia_Karp_1_1 120.45 39.746 103530000 23297000 30051000 20283000 0 0 15731000 134410 14031000 1370 659 1193 8410;8411;8412;8413;8414;8415 5495 5495 1561 1 DMNQVLDAYENK Oxidation (M) 1454.6348 0.63475872 138 A0A024R6K8;P23381;P23381-2;B4DTK8;G3V277;G3V3H8;G3V3Y5;G3V423;G3V5U1;G3V456 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 46.013 46.277 2 3.9615E-12 16334 20181213_JW_Orientia_Karp_1_2 209.19 132.97 42077000 13659000 13674000 11168000 0 0 0 0 3575800 1371 138 1194 8416;8417;8418;8419 5496;5497;5498 5497 123 3 DMNQVLDAYENK Unmodified 1438.6398 0.6398441 138 A0A024R6K8;P23381;P23381-2;B4DTK8;G3V277;G3V3H8;G3V3Y5;G3V423;G3V5U1;G3V456 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 56.155 56.528 2 4.803E-11 23023 20181213_JW_Orientia_Karp_1_2 196.67 146.37 75875000 25647000 19505000 23997000 3633500 0 1881000 725520 486430 1372 138 1194 8420;8421;8422;8423;8424;8425;8426 5499;5500;5501;5502 5500 4 DMQPSMESDMALVK 3 Oxidation (M) 1628.6732 0.67319442 879 E7EVA0;P27816;P27816-2;P27816-6;B4DM10;P27816-5;A0A024R2V2;A0A024R2S1;Q6NX68;Q05D06;H7C456 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 3 0 By MS/MS 1 37.984 38.636 2 0.04009 11744 20181213_JW_Orientia_Karp_3_1 45.764 18.12 0 0 0 0 0 0 0 0 0 1373 879 1195 8427 5503 5503 1 DMSGTMGFNEFK 2 Oxidation (M) 1394.5483 0.5482519 759 C9J0K6;P30626-3;P30626-2;P30626;B4DHQ6 SRI Sorcin yes no 0 0 2 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.791 46.064 2 0.0014321 15195 20181213_JW_Orientia_Karp_2_2 119.34 87.015 43921000 7427300 11895000 8556600 4681700 5243700 2915000 0 3202200 1374 759 1196 8428;8429;8430;8431;8432;8433;8434 5504;5505;5506;5507;5508;5509 5507 445;446 6 DMSNTTLLSR Oxidation (M) 1152.5445 0.54448715 1398 Karp_02184 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 40.018 40.378 2 1.722E-06 13536 20181213_JW_Orientia_Karp_1_1 179.42 101.27 177130000 60054000 29216000 33972000 25423000 0 0 23903000 4560000 1375 1398 1197 8435;8436;8437;8438;8439;8440 5510;5511 5510 1001 2 DMTLPPETNVILTK Oxidation (M) 1586.8226 0.82255949 879 E7EVA0;P27816;P27816-2;P27816-6;B4DM10;A0A024R2V2;A0A024R2S1 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 59.193 59.587 2 0.020525 22888 20181213_JW_Orientia_Karp_2_1 82.171 29.681 16825000 0 3566300 0 4283700 3876500 4099700 124070 874850 1376 879 1198 8441;8442;8443;8444;8445;8446 5512 5512 502 1 DMVCNMLGLNKQHKQR Oxidation (M);4 Deamidation (NQ) 1990.8911 0.89106654 2003 Q9ULK4-6;Q9ULK4-4;Q9ULK4-5;Q9ULK4 MED23 Mediator of RNA polymerase II transcription subunit 23 yes no 0 4 1 2 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 77.237 77.231 2 0.0403 29255 20181213_JW_Orientia_Karp_3_1 47.559 12.553 119110000 0 29920000 38642000 7658900 12117000 5562800 24509000 699770 1377 2003 1199 8447;8448;8449;8450;8451;8452;8453 5513 5513 2108;2109 1 DMVGIAQTGSGK Oxidation (M) 1178.5601 0.56013721 1929 Q92841;H3BLZ8;Q59F66;Q92841-1;Q92841-3;Q92841-2;B4DZQ7 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 32.722 32.905 2 0.011355 9725 20181213_JW_Orientia_Karp_1_1 91.858 52.553 14400000 4542900 6425100 3432200 0 0 0 0 0 1378 1929 1200 8454;8455;8456 5514 5514 1503 1 DMVGLDALDAQPLLK Oxidation (M) 1613.8335 0.83345853 1020 I3UJJ7;P12821-2;P12821;J3QLR4 ACE Angiotensin-converting enzyme;Angiotensin-converting enzyme, soluble form yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 71.184 71.334 2 0.00024251 32201 20181213_JW_Orientia_Karp_1_3 166.24 109.06 7586800 0 0 0 788180 2855900 0 3942700 0 1379 1020 1201 8457;8458;8459;8460;8461 5515;5516;5517 5515 561 3 DNCQYVYNVDQR Unmodified 1572.6627 0.66270481 186 A0A024R9Q1;P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 43.603 43.903 2 1.7534E-07 15006 20181213_JW_Orientia_Karp_1_2 187.85 121.56 35773000 12857000 7153800 11305000 0 0 0 4457700 0 + 1380 186 1202 8462;8463;8464;8465 5518;5519;5520;5521;5522 5520 5 DNCWPALK Unmodified 1002.4593 0.45930096 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.971 50.221 2 0.0041955 18668 20181213_JW_Orientia_Karp_1_3 139.97 57.665 139480000 37011000 32350000 22710000 27063000 8450900 11896000 0 0 1381 1126 1203 8466;8467;8468;8469;8470;8471 5523;5524;5525;5526;5527;5528 5525 6 DNCWPALK Deamidation (NQ) 1003.4433 0.44331654 1126 Karp_00329 yes yes 0 1 0 0 By MS/MS 1 54.604 55.154 2 0.038017 20335 20181213_JW_Orientia_Karp_2_1 88.819 32.697 0 0 0 0 0 0 0 0 0 1382 1126 1203 8472 5529 5529 1 DNEIAQLNDDLLR Unmodified 1527.7529 0.75290002 1144 Karp_00459 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.116 65.323 2 1.6478E-34 28176 20181213_JW_Orientia_Karp_1_3 282.05 182.08 929030000 138830000 146100000 172470000 24747000 149030000 87823000 210020000 0 1383 1144 1204 8473;8474;8475;8476;8477;8478;8479 5530;5531;5532;5533;5534;5535;5536 5532 7 DNEIAQLNDDLLR Deamidation (NQ) 1528.7369 0.73691561 1144 Karp_00459 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 2 4 4 4 4 68.185 68.366 2 4.2232E-34 29257 20181213_JW_Orientia_Karp_1_2 248.19 167.27 447280000 115190000 70306000 82740000 9127500 64992000 30745000 49083000 25092000 1384 1144 1204 8480;8481;8482;8483;8484;8485;8486;8487;8488;8489;8490;8491;8492;8493;8494;8495;8496;8497;8498;8499;8500;8501;8502;8503;8504;8505;8506;8507;8508 5537;5538;5539;5540;5541;5542;5543;5544;5545;5546;5547;5548;5549;5550;5551;5552;5553;5554 5539 533;534 17 DNFMDPVAAK Oxidation (M) 1122.5016 0.5015597 1352 Karp_01574 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 41.61 41.877 2 2.7119E-06 14288 20181213_JW_Orientia_Karp_1_1 176.38 99.607 351820000 91145000 94051000 56292000 0 34959000 14834000 60535000 0 1385 1352 1205 8509;8510;8511;8512;8513;8514 5555;5556;5557;5558;5559;5560 5555 927 6 DNFMDPVAAK Unmodified 1106.5066 0.50664508 1352 Karp_01574 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 51.186 51.436 2 0.00019216 20021 20181213_JW_Orientia_Karp_1_1 145.46 92.524 147270000 32309000 33050000 34252000 22428000 10996000 14235000 0 0 1386 1352 1205 8515;8516;8517;8518;8519;8520 5561;5562 5561 2 DNFVHVSGHPAIEELK Unmodified 1790.8951 0.89514758 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 44.608 44.988 3 0.011557 15689 20181213_JW_Orientia_Karp_1_2 125.39 84.586 200650000 0 61924000 86230000 20131000 0 7757000 24608000 0 1387 1320 1206 8521;8522;8523;8524;8525 5563;5564 5563 2 DNFVILDR Unmodified 990.51345 0.51344502 1370 Karp_01999 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 57.207 57.417 2 0.019128 21853 20181213_JW_Orientia_Karp_2_3 89.08 7.6983 16404000 7277900 2253600 2936000 0 1426600 2509800 0 0 1388 1370 1207 8526;8527;8528;8529;8530 5565 5565 1 DNHLLGTFDLTGIPPAPR Unmodified 1933.0058 0.005760665 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 69.028 69.138 3 0.030673 31138 20181213_JW_Orientia_Karp_1_1 51.089 8.5203 35777000 11415000 0 6184300 0 7840600 4214600 6122000 0 1389 1585 1208 8531;8532;8533;8534;8535 5566;5567;5568 5566 3 DNIFQLIEQQIK Unmodified 1487.7984 0.79839365 1199 Karp_00818 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 75.457 75.476 2 1.7155E-64 30853 20181213_JW_Orientia_Karp_2_3 303.31 150.21 940500000 267780000 105600000 259200000 39973000 41437000 56354000 147820000 22338000 1390 1199 1209 8536;8537;8538;8539;8540;8541;8542;8543 5569;5570;5571;5572;5573;5574;5575;5576;5577 5575 9 DNIQGITK Unmodified 887.47125 0.47124585 447 B2R4R0;P62805;Q0VAS5 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 32.312 32.669 2 0.00079971 9627 20181213_JW_Orientia_Karp_1_1 185.72 61.73 1678900000 781430000 24579000 663230000 30014000 31372000 11695000 106440000 30121000 1391 447 1210 8544;8545;8546;8547;8548;8549;8550;8551;8552 5578;5579;5580;5581;5582;5583;5584;5585;5586 5578 9 DNIQGITKPAIR Unmodified 1324.7463 0.7462985 447 B2R4R0;P62805;Q0VAS5 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 5 6 3 4 1 3 1 39.659 39.951 2;3 0.0021621 11711 20181213_JW_Orientia_Karp_2_2 121.02 81.396 29168000000 11708000000 6900500000 7552200000 985940000 411670000 26143000 1548300000 35352000 1392 447 1211 8553;8554;8555;8556;8557;8558;8559;8560;8561;8562;8563;8564;8565;8566;8567;8568;8569;8570;8571;8572;8573;8574;8575;8576;8577;8578;8579 5587;5588;5589;5590;5591;5592;5593;5594;5595;5596;5597;5598;5599 5598 13 DNIQGITKPAIR Deamidation (NQ) 1325.7303 0.73031409 447 B2R4R0;P62805;Q0VAS5 HIST1H4H;HIST1H4A Histone H4 yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 1 1 43.253 43.528 3 0.0072197 13959 20181213_JW_Orientia_Karp_1_2 111.52 78.467 200200000 74824000 57395000 54440000 1932800 0 0 11610000 0 1393 447 1211 8580;8581;8582;8583;8584;8585;8586;8587;8588;8589 5600;5601;5602;5603;5604;5605;5606 5602 173;1453 7 DNLAEDIMR Oxidation (M) 1091.4917 0.4917233 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 43.642 43.968 2 0.00021686 14579 20181213_JW_Orientia_Karp_2_3 164.46 99.888 1484200000 432300000 497420000 359220000 0 0 42271000 151540000 1497900 1394 1571 1212 8590;8591;8592;8593;8594;8595 5607;5608;5609;5610;5611;5612 5611 1188 6 DNLAEDIMR Unmodified 1075.4968 0.49680868 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 56.774 57.08 2 3.8167E-06 21117 20181213_JW_Orientia_Karp_2_3 204.42 125.31 1390000000 655150000 89211000 433570000 29482000 63464000 103940000 13675000 1528700 1395 1571 1212 8596;8597;8598;8599;8600;8601;8602;8603;8604;8605;8606 5613;5614;5615;5616;5617;5618;5619;5620;5621;5622 5621 10 DNLAEELEGVAGR Unmodified 1371.663 0.66302238 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 63.2 63.379 2 0.0012999 24802 20181213_JW_Orientia_Karp_2_3 143.55 80.889 32484000 9511500 10159000 6597800 0 3063000 3152500 0 0 1396 839 1213 8607;8608;8609;8610;8611 5623;5624;5625;5626 5626 4 DNLEYISEPSR Unmodified 1321.615 0.61500956 1125 Karp_00328 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 47.491 47.836 2 0.00025068 17117 20181213_JW_Orientia_Karp_1_3 152.67 83.825 270940000 48859000 78426000 60710000 19587000 16498000 23288000 294520 23279000 1397 1125 1214 8612;8613;8614;8615;8616;8617;8618;8619 5627;5628;5629 5627 3 DNLIEAVVIGSDDQIK Unmodified 1727.8941 0.89414453 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 2 1 2 1 72.942 73.005 2;3 0.00065462 26996 20181213_JW_Orientia_Karp_3_1 118.52 59.699 194190000 57824000 43453000 31777000 4438500 9741200 7188200 33041000 6729400 1398 1380 1215 8620;8621;8622;8623;8624;8625;8626;8627;8628;8629;8630;8631 5630;5631;5632;5633;5634;5635 5634 6 DNLSYIEHIFEISR Unmodified 1734.8577 0.85769944 437 Q6FHL9;B1AKZ4;Q15121;Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 0 0 By MS/MS By MS/MS 2 1 72.78 72.831 2;3 0.0018268 26895 20181213_JW_Orientia_Karp_3_1 109.95 5.1493 32001000 0 0 0 0 16411000 0 15590000 0 1399 437 1216 8632;8633;8634 5636;5637 5637 2 DNLTLWTSDMQGDGEEQNK Oxidation (M) 2195.9277 0.92770586 1728 V9HW98;P62258;P62258-2;B7ZA86 HEL2;YWHAE 14-3-3 protein epsilon yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 57.615 57.814 2 8.0819E-55 23896 20181213_JW_Orientia_Karp_1_2 263.72 193.63 41314000 8370000 17984000 11706000 0 0 3253300 0 0 1400 1728 1217 8635;8636;8637;8638;8639 5638;5639;5640;5641 5639 1354 4 DNLTLWTSDMQGDGEEQNK Unmodified 2179.9328 0.93279124 1728 V9HW98;P62258;P62258-2;B7ZA86 HEL2;YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 63.371 63.513 2 3.2331E-24 27779 20181213_JW_Orientia_Karp_1_1 220.52 182.34 37187000 17763000 8562900 10861000 0 0 0 0 0 1401 1728 1217 8640;8641;8642 5642;5643 5642 2 DNLTLWTSDTQGDEAEAGEGGEN Unmodified 2407.9888 0.98878579 824 D0PNI1;P63104;B0AZS6;P63104-2;B7Z2E6;H0YB80;Q2F831 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS 1 1 73.094 73.217 2 6.7491E-45 33727 20181213_JW_Orientia_Karp_1_2 232.62 191.61 16954000 0 8244600 8708900 0 0 0 0 0 1402 824 1218 8643;8644 5644;5645;5646 5644 3 DNPLDPVLAK Unmodified 1080.5815 0.58152458 1931 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 56.444 56.644 2 0.0040429 23534 20181213_JW_Orientia_Karp_1_1 101.66 71.498 40804000 14549000 15016000 8440600 0 0 2798900 0 0 1403 1931 1219 8645;8646;8647;8648 5647;5648 5647 2 DNPQTHYYAVAVVK Unmodified 1603.7995 0.79945628 808 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 43.279 43.816 2 0.010879 13699 20181213_JW_Orientia_Karp_3_2 96.82 50.662 4667100 0 0 0 2355100 0 0 1782900 529110 + 1404 808 1220 8649;8650;8651 5649 5649 1 DNQNFCVPCYEK Unmodified 1572.6337 0.63371286 1030 Q6I9R8;Q2TSB7;Q2XQU9;J3KNW4;Q14192;I0CE67;Q53T40 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 48.752 49.144 2 0.033212 17002 20181213_JW_Orientia_Karp_2_2 77.744 48.788 7548900 0 1806700 2230900 0 1818400 0 64208 1628700 1405 1030 1221 8652;8653;8654;8655;8656 5650 5650 1 DNQVAPWVDSK Unmodified 1257.599 0.59896556 1154 Karp_00560 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.364 50.709 2 0.017055 19197 20181213_JW_Orientia_Karp_1_2 87.001 55.066 78260000 13431000 21384000 13840000 13794000 3906400 8791100 2227600 886100 1406 1154 1222 8657;8658;8659;8660;8661;8662;8663;8664 5651 5651 1 DNRNLFEVQENEPQK 2 Deamidation (NQ) 1860.849 0.84898525 771 C9JE82;C9JVC9;Q9NY47-4;Q9NY47-2;Q9NY47-3;Q9NY47;Q9NY47-5 CACNA2D2 Voltage-dependent calcium channel subunit alpha-2/delta-2;Voltage-dependent calcium channel subunit alpha-2-2;Voltage-dependent calcium channel subunit delta-2 yes no 0 2 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 1 3 3 3 3 64.102 64.326 2;3 0.0044305 26541 20181213_JW_Orientia_Karp_1_1 132.03 66.401 17607000000 4157900000 2968600000 4157800000 880430000 3141600000 2168100000 77115000 55185000 1407 771 1223 8665;8666;8667;8668;8669;8670;8671;8672;8673;8674;8675;8676;8677;8678;8679;8680;8681;8682;8683;8684;8685;8686 5652;5653;5654;5655;5656;5657;5658;5659 5652 254;255;1637;1638 2 DNRNLFEVQENEPQK 3 Deamidation (NQ) 1861.833 0.83300084 771 C9JE82;C9JVC9;Q9NY47-4;Q9NY47-2;Q9NY47-3;Q9NY47;Q9NY47-5 CACNA2D2 Voltage-dependent calcium channel subunit alpha-2/delta-2;Voltage-dependent calcium channel subunit alpha-2-2;Voltage-dependent calcium channel subunit delta-2 yes no 0 3 0 1 By MS/MS By matching By matching By matching 1 1 1 1 66.244 66.433 2 0.022819 29580 20181213_JW_Orientia_Karp_1_1 73.666 31.977 66447000 30249000 9359200 21540000 0 0 0 0 5299800 1408 771 1223 8687;8688;8689;8690 5660 5660 254;255;1637;1638 0 DNSQVNAVTVLTLLDK Unmodified 1728.9258 0.92577901 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 2 1 74.64 74.675 2 8.3169E-180 34398 20181213_JW_Orientia_Karp_1_3 372.86 291.94 962660000 283350000 127780000 263370000 35318000 56322000 39516000 156170000 819430 1409 345 1224 8691;8692;8693;8694;8695;8696;8697;8698;8699;8700 5661;5662;5663;5664;5665;5666;5667 5663 7 DNSQVNAVTVLTLLDK Deamidation (NQ) 1729.9098 0.90979459 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 2 1 1 75.863 75.868 2 6.2564E-95 35211 20181213_JW_Orientia_Karp_1_1 312.25 196.96 311970000 147550000 43228000 0 15307000 33130000 19960000 32969000 19833000 1410 345 1224 8701;8702;8703;8704;8705;8706;8707;8708;8709;8710 5668;5669;5670;5671;5672;5673;5674 5669 131;132;1405 7 DNSTMGYMAAK 2 Oxidation (M) 1219.4849 0.48492336 1057 K9JA46;P07900;P07900-2;Q8TBA7;O75322;Q96HX7 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 2 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 24.165 24.534 2 0.00030967 5477 20181213_JW_Orientia_Karp_3_1 142.36 85.184 7962500 887680 2716300 0 456110 686670 0 1959500 1256200 1411 1057 1225 8711;8712;8713;8714;8715;8716;8717;8718 5675;5676;5677;5678;5679;5680 5680 574;575 6 DNSTMGYMMAK 3 Oxidation (M) 1295.4832 0.4832088 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 3 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 23.941 24.273 2 2.1968E-09 5756 20181213_JW_Orientia_Karp_1_1 205.18 177.43 19990000 4073800 3887200 2326800 1188400 842640 774040 4813400 2083700 1412 251 1226 8719;8720;8721;8722;8723;8724;8725;8726 5681;5682;5683;5684;5685;5686;5687;5688 5681 179;180;181 8 DNSTMGYMMAK 3 Oxidation (M);Deamidation (NQ) 1296.4672 0.46722439 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 1 3 0 By MS/MS By MS/MS By matching 1 2 1 26.59 27.043 2 0.028336 6357 20181213_JW_Orientia_Karp_1_3 56.563 44.337 2261800 0 1212200 944740 0 0 0 0 104790 1413 251 1226 8727;8728;8729;8730 5689;5690 5690 94 179;180;181 2 DNTTLLTQVQTTMR Oxidation (M) 1636.809 0.80903469 930 V9HW58;Q53H88;F5H2S7;Q13561;Q13561-3;Q13561-2;A8K8J9;B3KTX4;H0YI98 HEL-S-77;DCTN2 Dynactin subunit 2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 51.789 52.098 2 0.0011248 20506 20181213_JW_Orientia_Karp_1_1 131.69 82.71 34903000 8712900 8044100 7336400 5105200 4928300 0 0 775710 1414 930 1227 8731;8732;8733;8734;8735;8736;8737 5691;5692;5693;5694 5691 525 4 DNYPQSVPR Unmodified 1074.5094 0.50942227 1488 O00159;D3DTH7;F5H6E2;B7Z3E5;O00159-2;O00159-3 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 35.273 35.573 2 0.015867 10996 20181213_JW_Orientia_Karp_1_1 86.67 8.5213 19796000 9239600 4163600 4266500 0 0 0 2126600 0 1415 1488 1228 8738;8739;8740;8741 5695 5695 1 DNYQSVVSYR Unmodified 1229.5677 0.56766543 1317 Karp_01279 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 43.611 43.971 2 1.1937E-17 14920 20181213_JW_Orientia_Karp_1_3 233.09 145.39 302130000 100060000 63038000 83299000 1492500 0 0 51506000 2735000 1416 1317 1229 8742;8743;8744;8745;8746;8747;8748 5696;5697;5698;5699 5698 4 DNYVPEVSALDQEIIEVDPDTK Unmodified 2488.1857 0.18569468 1572 P0CW22;P08708;H0YN88;A0A075B716 RPS17L;RPS17 40S ribosomal protein S17-like;40S ribosomal protein S17 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 2 2 2 1 74.095 74.135 2;3 5.8546E-05 34069 20181213_JW_Orientia_Karp_1_3 146.81 105.45 307390000 62595000 99707000 118450000 14958000 0 0 11509000 173790 1417 1572 1230 8749;8750;8751;8752;8753;8754;8755;8756;8757;8758 5700;5701;5702;5703 5702 4 DPDAGIDEAQVEQDAQALFQAGELK Unmodified 2657.2457 0.24566918 1573 V9HWE0;P08758;D6RBL5;D6RBE9 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 2 1 75.163 75.177 2;3 1.5987E-11 34747 20181213_JW_Orientia_Karp_1_3 164.01 133.87 151030000 58688000 42085000 17353000 0 12053000 6712400 13719000 421100 1418 1573 1231 8759;8760;8761;8762;8763;8764;8765;8766;8767;8768;8769 5704;5705;5706;5707;5708;5709;5710 5706 7 DPDAQPGGELMLGGTDSK Oxidation (M) 1802.7993 0.79925787 1009 H7C469;V9HWI3;P07339;F8WD96;C9JH19 HEL-S-130P;CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 0 0 1 0 By MS/MS By matching 1 1 49.659 49.933 2 0.020232 18705 20181213_JW_Orientia_Karp_1_2 77.42 36.693 10694000 0 5623200 5070900 0 0 0 0 0 1419 1009 1232 8770;8771 5711 5711 557 1 DPDLLSK Unmodified 786.41233 0.41233399 1255 Karp_00935 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 40.82 41.12 2 0.012566 12760 20181213_JW_Orientia_Karp_2_1 116.9 40.129 79520000 16090000 24135000 12661000 14814000 4294200 0 7525600 0 1420 1255 1233 8772;8773;8774;8775;8776;8777;8778;8779 5712;5713;5714;5715;5716;5717;5718 5715 7 DPELWGSVLLESNPYR Unmodified 1873.921 0.92102798 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 74.554 74.586 2 4.4138E-05 34668 20181213_JW_Orientia_Karp_1_2 150.49 107.4 16182000 0 6234000 8021400 0 0 0 1927000 0 1421 1757 1234 8780;8781;8782 5719 5719 1 DPENFPFVVLGNK Unmodified 1474.7456 0.7456298 1696 P51149;C9J592 RAB7A Ras-related protein Rab-7a yes no 0 0 0 0 By matching By MS/MS 1 1 73.184 73.209 2 0.00693 26974 20181213_JW_Orientia_Karp_3_1 104.07 28.18 71405000 6428600 0 0 0 0 0 64977000 0 1422 1696 1235 8783;8784 5720 5720 1 DPFAHLPK Unmodified 923.4865 0.48650199 1634 Q53YD7;P26641;P26641-2;B4DUP0 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 40.369 40.689 2 0.018077 13291 20181213_JW_Orientia_Karp_1_2 90.777 34.655 124120000 35250000 49420000 21678000 919190 1478600 1943900 11502000 1925200 1423 1634 1236 8785;8786;8787;8788;8789;8790;8791;8792 5721;5722;5723 5722 3 DPGLVDQLVK Unmodified 1082.5972 0.59717465 1685 Q0VGA5;Q53HA4;Q5T5C7;P49591 SARS Serine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 58.592 58.805 2 0.00080334 24567 20181213_JW_Orientia_Karp_1_2 128.27 72.739 45654000 25809000 8944300 0 0 4347700 6553500 0 0 1424 1685 1237 8793;8794;8795;8796;8797 5724;5725;5726;5727 5724 4 DPGVLDR Unmodified 770.39227 0.39226725 450 B2R5H0;V9HWH9;P31949 HEL-S-43;S100A11 Protein S100;Protein S100-A11;Protein S100-A11, N-terminally processed yes no 0 0 0 0 By MS/MS 1 35.1 35.351 2 0.02358 9398 20181213_JW_Orientia_Karp_2_2 113.5 56.036 0 0 0 0 0 0 0 0 0 1425 450 1238 8798 5728 5728 1 DPIDVDLPEEAER Unmodified 1496.6995 0.69946747 1640 P29590-4;P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;H3BVD2;H3BT29 PML Protein PML yes no 0 0 0 0 By MS/MS 1 58.996 58.996 2 0.018394 24982 20181213_JW_Orientia_Karp_1_1 105.2 74.38 0 0 0 0 0 0 0 0 0 1426 1640 1239 8799 5729 5729 1 DPLAVDK Unmodified 756.40177 0.4017693 1719 Q6FGE5;P60903;D3DV26 S100A10 Protein S100-A10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 34.825 35.183 2 0.02303 9656 20181213_JW_Orientia_Karp_2_1 98.523 33.72 71848000 20765000 13196000 6609900 3558300 6341000 2754600 4526200 14097000 1427 1719 1240 8800;8801;8802;8803;8804;8805;8806;8807 5730;5731;5732;5733;5734;5735 5733 6 DPLNPIK Unmodified 795.44905 0.44905385 1804 Q5SQT6;V9HWB5;Q15181 PPA1;HEL-S-66p Inorganic pyrophosphatase yes no 0 0 0 0 By MS/MS 1 42.896 42.896 2 0.031261 14914 20181213_JW_Orientia_Karp_1_1 99.375 20.759 0 0 0 0 0 0 0 0 0 1428 1804 1241 8808 5736 5736 1 DPLVIELGQK Unmodified 1110.6285 0.62847478 939 H0YHM7;Q86SR8;F8VU90;Q9NYL4-2;Q9NYL4 FKBP11 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP11 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 59.321 59.648 2 0.00042669 25109 20181213_JW_Orientia_Karp_1_2 137.05 104.15 11595000 0 4526700 4038400 0 0 2346700 0 683130 1429 939 1242 8809;8810;8811;8812;8813 5737;5738;5739 5738 3 DPPSWSVLAGHSR Unmodified 1407.6895 0.6895119 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 48.892 49.142 3 0.0025434 18615 20181213_JW_Orientia_Karp_1_1 104.17 68.58 38565000 12278000 14784000 7527000 3145900 830390 0 0 0 1430 2016 1243 8814;8815;8816;8817;8818 5740;5741;5742 5740 3 DPSASPGDAGEQAIR Unmodified 1469.6746 0.6746497 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 37.679 37.979 2 0.0032894 12237 20181213_JW_Orientia_Karp_1_1 115.57 62.785 49166000 16118000 11552000 17465000 0 0 0 4030700 0 1431 19 1244 8819;8820;8821;8822 5743;5744 5743 2 DPTEDAIEALAR Unmodified 1299.6307 0.63065962 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 63.995 64.196 2 3.4859E-08 28155 20181213_JW_Orientia_Karp_1_1 193.83 140.74 59183000 26484000 6742000 9382400 1160700 8222900 4967000 0 2223600 1432 1193 1245 8823;8824;8825;8826;8827;8828;8829 5745;5746;5747;5748;5749;5750 5745 6 DPVAATSHAQANNVQTDSTENE Unmodified 2297.9996 0.99962525 1337 Karp_01411 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.272 36.556 3 2.0542E-13 11025 20181213_JW_Orientia_Karp_1_2 176.39 136.2 97706000 22422000 22798000 40324000 0 1938600 1953500 8270600 0 1433 1337 1246 8830;8831;8832;8833;8834;8835;8836 5751;5752;5753;5754;5755;5756;5757 5752 7 DPVAATSHAQANNVQTDSTENE Deamidation (NQ) 2298.9836 0.98364083 1337 Karp_01411 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 2 1 2 37.762 38.107 2;3 1.1171E-38 12210 20181213_JW_Orientia_Karp_1_1 236.75 192.96 72385000 30791000 7080400 9935900 5729400 3738600 0 15110000 0 1434 1337 1246 8837;8838;8839;8840;8841;8842;8843;8844;8845 5758;5759;5760;5761 5758 779;780 3 DPVLLGLCNQVELDTIVK Unmodified 2025.0816 0.081627724 1122 Karp_00322 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 74.501 74.511 2 1.2331E-24 34306 20181213_JW_Orientia_Karp_1_3 225.29 173.51 51245000 18648000 12562000 9414100 0 0 2087800 8533300 0 1435 1122 1247 8846;8847;8848;8849;8850 5762;5763;5764;5765;5766 5764 4 DPVQEAWAEDVDLR Unmodified 1641.7635 0.76346471 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;B4DRT3;Q8WUW7;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 64.6 64.917 2 0.0016049 25670 20181213_JW_Orientia_Karp_2_1 129.37 92.84 16063000 0 0 0 2403400 10851000 0 2808300 0 1436 1597 1248 8851;8852;8853 5767;5768 5767 2 DPVQLNLLYVQAR Unmodified 1527.8409 0.84092717 2016 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.387 69.567 2 0.0013781 31490 20181213_JW_Orientia_Karp_1_1 163.12 104.98 61574000 0 6688400 19020000 3198600 4319700 5950000 15401000 6996500 1437 2016 1249 8854;8855;8856;8857;8858;8859;8860;8861 5769;5770;5771;5772 5769 4 DPWYSWDQPGLR Unmodified 1518.6892 0.68917755 909 K9J7I2;E9PQ68;O95169-3;O95169-2;O95169 NDUFB8 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial yes no 0 0 0 0 By MS/MS 1 67.199 67.199 2 0.021152 29996 20181213_JW_Orientia_Karp_1_1 97.734 55.016 0 0 0 0 0 0 0 0 0 1438 909 1250 8862 5773 5773 1 DPYTGQSVSLFQALK Unmodified 1652.841 0.84098675 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 68.984 69.106 2 7.1038E-49 30709 20181213_JW_Orientia_Karp_1_3 262.15 164.19 41823000 11471000 11720000 14694000 0 0 1626800 0 2310700 1439 1803 1251 8863;8864;8865;8866;8867;8868 5774;5775;5776;5777 5776 4 DQALQLQVLNSR Deamidation (NQ) 1384.731 0.73104237 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 60.049 60.442 2 1.2765E-05 23168 20181213_JW_Orientia_Karp_2_2 178.32 123.85 17007000 0 5019900 0 3858800 4424000 2569900 212950 921400 1440 1789 1252 8869;8870;8871;8872;8873;8874 5778;5779;5780 5780 1159 3 DQAPLALVGK Unmodified 1010.576 0.57604528 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 1 1 1 52.696 52.997 1;2 0.00025032 19113 20181213_JW_Orientia_Karp_2_1 143.37 77.908 519160000 168560000 84997000 87834000 68342000 33636000 74470000 1169600 151630 1441 1349 1253 8875;8876;8877;8878;8879;8880;8881;8882;8883;8884;8885 5781;5782;5783;5784;5785;5786 5785 5 DQAVENILVSPVVVASSLGLVSLGGK Unmodified 2550.4269 0.42686843 115 A0A024R5K8;P50454;B4DN87;A8K259;E9PJH8;E9PIG2;E9PRS3;E9PNX1;E9PK86;E9PMI5;E9PR70;E9PPV6;E9PLA6 SERPINH1 Serpin H1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 79.581 79.519 3 0.036094 37442 20181213_JW_Orientia_Karp_1_1 36.864 9.9488 23591000 12319000 0 0 0 3305400 1956500 6010000 0 1442 115 1254 8886;8887;8888;8889 5787 5787 1 DQDLEPGAPSMGAK Oxidation (M) 1430.6348 0.63475872 1568 P07814;B4DP50 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 36.313 36.463 2 0.018159 11568 20181213_JW_Orientia_Karp_1_1 84.289 47.605 7780600 3413800 0 3590600 0 776150 0 0 0 1443 1568 1255 8890;8891;8892 5788 5788 1187 1 DQDQTLLAGLGLNK Unmodified 1484.7835 0.78347187 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.54 68.748 2 1.0138E-245 30930 20181213_JW_Orientia_Karp_1_1 416.62 308.05 255640000 46668000 37364000 33937000 14595000 36873000 24520000 47307000 14373000 1444 1162 1256 8893;8894;8895;8896;8897;8898;8899;8900 5789;5790;5791;5792;5793;5794;5795;5796 5789 8 DQEFTVDTR Unmodified 1109.4989 0.49891717 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 41.677 42.017 2 0.00024791 14336 20181213_JW_Orientia_Karp_1_1 166.34 63.824 44148000 21127000 0 18849000 0 0 0 3878900 292330 1445 1520 1257 8901;8902;8903;8904;8905 5797;5798 5797 2 DQELVPYNIVR Unmodified 1344.7038 0.70376498 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 61.84 62.142 2 7.1357E-10 23163 20181213_JW_Orientia_Karp_3_2 219.72 153.42 1967400000 325580000 0 998690000 77122000 348070000 167560000 3194900 47213000 1446 1074 1258 8906;8907;8908;8909;8910;8911;8912;8913;8914 5799;5800;5801;5802;5803;5804;5805;5806;5807;5808 5808 10 DQELVPYNIVR Deamidation (NQ) 1345.6878 0.68778057 1074 Karp_00050 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 64.666 64.846 2 0.00074579 28540 20181213_JW_Orientia_Karp_1_1 145.25 62.831 50120000 18776000 11275000 0 1105200 10416000 8547700 0 0 1447 1074 1258 8915;8916;8917;8918;8919 5809;5810;5811;5812;5813 5810 413 5 DQFTTTEVNMAR Oxidation (M) 1427.6351 0.63509307 841 D3DWY7;P61758;Q6FH24;F5H2A7;B4DWR3 VBP1 Prefoldin subunit 3 yes no 0 0 1 0 By MS/MS 1 39.956 39.956 2 0.021623 13365 20181213_JW_Orientia_Karp_1_1 98.407 69.68 0 0 0 0 0 0 0 0 0 1448 841 1259 8920 5814 5814 484 1 DQGEVGVEEEPFALGAEASNFQQEPAPR Unmodified 3000.3737 0.37372324 329 A7MD96;Q8N3V7-3;Q8N3V7-2;B3KXB8;Q8N3V7 SYNPO Synaptopodin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 70.598 70.704 3 4.8119E-09 32151 20181213_JW_Orientia_Karp_1_1 132.81 113.91 45199000 11070000 4904800 11879000 2838500 3707200 3597800 7202000 0 1449 329 1260 8921;8922;8923;8924;8925;8926;8927 5815;5816;5817;5818 5815 4 DQGEYETFWNNFGAVLK Deamidation (NQ) 2017.9058 0.90577185 1251 Karp_00928 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 74.853 74.874 2 5.303E-215 34859 20181213_JW_Orientia_Karp_1_2 379.01 297.24 179480000 56412000 25286000 54405000 1668100 13715000 9931500 18063000 0 1450 1251 1261 8928;8929;8930;8931;8932;8933;8934 5819;5820;5821;5822;5823;5824;5825 5820 646;647 7 DQGEYETFWNNFGAVLK Unmodified 2016.9218 0.92175626 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 75.398 75.417 2 4.5581E-120 28217 20181213_JW_Orientia_Karp_3_1 322.18 243.67 346530000 101530000 59041000 78373000 25483000 24975000 23309000 33309000 505970 1451 1251 1261 8935;8936;8937;8938;8939;8940;8941;8942 5826;5827;5828;5829;5830;5831;5832;5833 5833 8 DQGTYEDYVEGLR Unmodified 1543.6791 0.67906638 724 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660-2;P60660;G3V1Y7;Q6IBG5;F8VPF3;F8VZU9;F8W180;H0YI43 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 57.284 57.629 2 1.1252E-72 21918 20181213_JW_Orientia_Karp_2_3 295.34 248.88 1692800000 323510000 348000000 242580000 289360000 196350000 152370000 24649000 115930000 1452 724 1262 8943;8944;8945;8946;8947;8948;8949;8950 5834;5835;5836;5837;5838;5839;5840;5841;5842 5839 9 DQIAQLEASLAAAK Unmodified 1427.762 0.76200815 1613 P20700;E9PBF6 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 65.091 65.317 2 9.7677E-18 28916 20181213_JW_Orientia_Karp_1_1 219.89 145.94 57569000 11561000 5688600 14238000 0 9725000 0 12782000 3573700 1453 1613 1263 8951;8952;8953;8954;8955;8956;8957 5843;5844;5845;5846;5847 5843 5 DQISETLFSGPR Unmodified 1348.6623 0.6622941 1288 Karp_01160 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 59.404 59.704 2 0.0053446 22760 20181213_JW_Orientia_Karp_2_2 107.34 65.917 16323000 0 9161100 0 0 7161800 0 0 0 1454 1288 1264 8958;8959 5848;5849 5849 2 DQIVDLTVGNNK Unmodified 1314.6779 0.67794416 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.649 52.995 2 7.4881E-52 19096 20181213_JW_Orientia_Karp_2_1 322.92 141.51 1324400000 210000000 159320000 138910000 238610000 268770000 218830000 72133000 17799000 + 1455 1653 1265 8960;8961;8962;8963;8964;8965;8966;8967 5850;5851;5852;5853;5854;5855;5856 5853 7 DQIVDLTVGNNK Deamidation (NQ) 1315.662 0.66195975 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 54.959 55.312 2 0.0016351 21376 20181213_JW_Orientia_Karp_2_2 168.85 113.32 95467000 17202000 0 0 0 42576000 31814000 721920 3152400 + 1456 1653 1265 8968;8969;8970;8971;8972;8973;8974 5857;5858;5859 5857 1096 2 DQLIYNLLK Unmodified 1118.6336 0.63356015 587 B4DJI1;V9HWB9;P00338-4;P00338;P00338-3;P00338-5;P00338-2;F5H8H6;F5GXC7;F5GWW2;F5GXU1;F5GZQ4;F5H5J4;F5H6W8;F5GXH2;F5GYU2;F5GXY2 HEL-S-133P;LDHA L-lactate dehydrogenase;L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.435 67.611 2 8.6525E-05 26948 20181213_JW_Orientia_Karp_2_3 190.26 76.85 25813000 11134000 1965900 2738600 0 4154000 2858300 0 2962600 1457 587 1266 8975;8976;8977;8978;8979;8980 5860;5861;5862;5863;5864;5865 5864 6 DQLLLGPTYATPK Unmodified 1415.766 0.76603089 1710 P55084-2;P55084;F5GZQ3;B4DDC9;B4DY96;B5MD38 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 59.275 59.619 2 8.104E-05 25440 20181213_JW_Orientia_Karp_1_1 165.35 76.323 86806000 32983000 22123000 20410000 8120700 0 0 72447 3096700 1458 1710 1267 8981;8982;8983;8984;8985;8986;8987 5866;5867;5868;5869;5870;5871 5866 6 DQLLPNLR Unmodified 967.54508 0.5450795 1722 Q6LEE2;Q6FGB3;P61457 PCBD;PCBD1 Pterin-4-alpha-carbinolamine dehydratase yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.932 55.252 2 0.012087 20597 20181213_JW_Orientia_Karp_2_3 100.45 44.44 41583000 0 8764900 7804100 2836000 7943500 14235000 0 0 1459 1722 1268 8988;8989;8990;8991;8992 5872 5872 1 DQLNMAKNTWPILK Deamidation (NQ) 1671.8654 0.86542736 564 B4DF95;Q15735-3;Q15735-2;Q15735 INPP5J Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A yes no 0 1 0 1 By MS/MS 1 58.634 58.885 3 0.02825 22313 20181213_JW_Orientia_Karp_2_2 88.224 32.085 4943100 0 0 0 0 4943100 0 0 0 1460 564 1269 8993 5873 5873 200 1 DQLQEQLQALK Unmodified 1312.6987 0.69867961 118 A0A024R5M9;Q4LE64;Q14980-2;Q14980;Q59HB8;Q14980-4;Q14980-3;A0A024R5G4;F5H4J1;A8K394 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By matching 1 1 54.067 54.166 2 0.0098733 21958 20181213_JW_Orientia_Karp_1_1 96.171 37.191 15217000 8914300 0 6302600 0 0 0 0 0 1461 118 1270 8994;8995 5874 5874 1 DQLQTFSEEHPVLLTEAPLNPR Unmodified 2533.2813 0.28126682 601 R4GMT0;B4DM97;P61163;B4DXP9 ACTR1A Alpha-centractin no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 64.813 64.963 3 2.158E-05 28035 20181213_JW_Orientia_Karp_1_3 145.44 121.21 103570000 42435000 0 35908000 2116800 15084000 8030200 0 0 1462 601 1271 8996;8997;8998;8999;9000 5875;5876 5876 2 DQMQQQLNDYEQLLDVK Oxidation (M) 2122.9841 0.98409852 1613 P20700;E9PBF6;B4DZT3 LMNB1 Lamin-B1 yes no 0 0 1 0 By MS/MS By matching 1 1 66.935 67.034 2 8.0217E-05 29876 20181213_JW_Orientia_Karp_1_1 143.64 91.91 11069000 5375700 0 5693800 0 0 0 0 0 1463 1613 1272 9001;9002 5877 5877 1233 1 DQMQQQLNDYEQLLDVK Unmodified 2106.9892 0.9891839 1613 P20700;E9PBF6;B4DZT3 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By matching 1 1 71.976 72.155 2 2.5224E-05 33087 20181213_JW_Orientia_Karp_1_2 148.18 100.75 6633800 0 5078600 0 0 0 0 0 1555200 1464 1613 1272 9003;9004 5878 5878 1 DQNFVILEFPVEEQDR Unmodified 1976.948 0.94797101 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;A0A075B727 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 74.839 74.863 2 0.00011482 34903 20181213_JW_Orientia_Karp_1_2 147.39 93.365 125070000 36696000 25722000 60024000 2631600 0 0 0 0 1465 274 1273 9005;9006;9007;9008 5879;5880;5881;5882 5880 4 DQNYPGAIAIHHPNVAEK Unmodified 1972.9755 0.97552317 801 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 21 15 19 19 20 22 9 6 44.749 45.025 2;3;4 2.6668E-23 11676 20181213_JW_Orientia_Karp_3_2 226.7 113.86 621040000000 182180000000 114320000000 140200000000 73379000000 16548000000 17981000000 74806000000 1619100000 + 1466 801 1274 9009;9010;9011;9012;9013;9014;9015;9016;9017;9018;9019;9020;9021;9022;9023;9024;9025;9026;9027;9028;9029;9030;9031;9032;9033;9034;9035;9036;9037;9038;9039;9040;9041;9042;9043;9044;9045;9046;9047;9048;9049;9050;9051;9052;9053;9054;9055;9056;9057;9058;9059;9060;9061;9062;9063;9064;9065;9066;9067;9068;9069;9070;9071;9072;9073;9074;9075;9076;9077;9078;9079;9080;9081;9082;9083;9084;9085;9086;9087;9088;9089;9090;9091;9092;9093;9094;9095;9096;9097;9098;9099;9100;9101;9102;9103;9104;9105;9106;9107;9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9121;9122;9123;9124;9125;9126;9127;9128;9129;9130;9131;9132;9133;9134;9135;9136;9137;9138;9139 5883;5884;5885;5886;5887;5888;5889;5890;5891;5892;5893;5894;5895;5896;5897;5898;5899;5900;5901;5902;5903;5904;5905;5906;5907;5908;5909;5910;5911;5912;5913;5914;5915;5916;5917;5918;5919;5920;5921;5922;5923;5924;5925;5926;5927;5928;5929;5930;5931;5932;5933;5934;5935;5936;5937;5938;5939;5940;5941;5942;5943;5944;5945;5946;5947 5946 56 DQNYPGAIAIHHPNVAEK Deamidation (NQ) 1973.9595 0.95953875 801 CON__P15636 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 4 5 4 5 4 2 5 1 42.141 42.463 2;3;4 0.0023727 13466 20181213_JW_Orientia_Karp_1_2 113.67 63.207 9816700000 2955900000 3386100000 1858400000 339110000 82146000 34549000 1154400000 6043100 + 1467 801 1274 9140;9141;9142;9143;9144;9145;9146;9147;9148;9149;9150;9151;9152;9153;9154;9155;9156;9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168;9169 5948;5949;5950;5951;5952;5953;5954;5955;5956 5949 286;287;1655 7 DQNYPGAIAIHHPNVAEKR Unmodified 2129.0766 0.076634197 801 CON__P15636 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 1 2 42.681 43.051 3;5 0.035257 18678 20181213_JW_Orientia_Karp_2_1 58.635 21.997 5877300000 3409300000 25493000 1065300000 6656400 0 0 405530000 964990000 + 1468 801 1275 9170;9171;9172;9173;9174;9175;9176;9177;9178;9179;9180 5957;5958 5957 1 DQPQNVSENLLPQNAPNYWYLQGLIHK Unmodified 3178.5836 0.58359685 1495 Q5T765;O14879;B4DLS7 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 72.529 72.603 3 0.0021419 29645 20181213_JW_Orientia_Karp_2_1 65.677 42.431 92977000 34840000 0 29753000 4948000 0 0 23436000 0 1469 1495 1276 9181;9182;9183;9184 5959 5959 1 DQQEAALVDMVNDGVEDLR Unmodified 2115.9743 0.97426212 1574;756 V9HWE9;P09211;A8MX94;C7DJS1;B2C310;C7DJS2 HEL-S-22;GSTP1 Glutathione S-transferase P no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 73.274 73.323 2 3.8379E-24 33816 20181213_JW_Orientia_Karp_1_2 219.53 172.73 93698000 30621000 26933000 29878000 6266200 0 0 0 0 1470 1574;756 1277 9185;9186;9187;9188 5960;5961;5962 5961 3 DQQEAALVDMVNDGVEDLR Oxidation (M) 2131.9692 0.96917674 1574;756 V9HWE9;P09211;A8MX94;C7DJS1;B2C310;C7DJS2 HEL-S-22;GSTP1 Glutathione S-transferase P no no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 64.133 64.306 2;3 1.0544E-31 28161 20181213_JW_Orientia_Karp_1_1 239.19 176.85 37740000 3269100 11091000 12613000 0 3627400 6201000 0 938830 1471 1574;756 1277 9189;9190;9191;9192;9193;9194;9195;9196;9197;9198;9199 5963;5964;5965;5966 5963 443 4 DQQEQVKEDMEVFSDVSYKQR Oxidation (M);2 Deamidation (NQ) 2605.149 0.1489916 607 B4DN98 yes yes 0 2 1 2 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 76.61 76.602 3 0.013825 28980 20181213_JW_Orientia_Karp_3_1 63.447 31.477 161460000 34781000 18290000 13926000 13704000 4178000 21919000 54666000 0 1472 607 1278 9200;9201;9202;9203;9204;9205;9206 5967 5967 1537;1538 377 1 DQTVVGPALAAYR Unmodified 1359.7147 0.71466402 493 B3KWK5;B3KRV6;Q6FHL8;Q5M8T4;B2RCP7;P29279 CTGF Connective tissue growth factor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 55.617 55.952 2 3.3574E-11 20846 20181213_JW_Orientia_Karp_2_1 197.73 144.05 106840000 40151000 29536000 0 11684000 12529000 12067000 0 875930 1473 493 1279 9207;9208;9209;9210;9211;9212 5968;5969;5970;5971;5972 5970 5 DQVANSAFVER Unmodified 1234.5942 0.59421454 1057 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q96HX7;Q86U12 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 41.548 41.818 2 0.00048994 13731 20181213_JW_Orientia_Karp_1_3 141.71 80.032 92709000 26175000 19537000 29880000 0 2130700 0 14987000 0 1474 1057 1280 9213;9214;9215;9216;9217 5973;5974;5975;5976 5975 4 DQVEQNITVDQLLSNVPQSSATIAK Unmodified 2697.3821 0.38210308 1319 Karp_01281 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 3 1 72.13 72.217 2;3 2.4811E-21 32752 20181213_JW_Orientia_Karp_1_3 180.21 123.46 1575700000 404830000 179820000 333670000 10233000 228110000 79612000 336880000 2506700 1475 1319 1281 9218;9219;9220;9221;9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232 5977;5978;5979;5980;5981;5982;5983;5984 5980 8 DQVIDLGVGGIK Unmodified 1212.6714 0.67140222 1240 Karp_00907 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 61.254 61.546 2 1.7082E-23 25985 20181213_JW_Orientia_Karp_1_3 238.86 164.56 667180000 164060000 122500000 188100000 0 87990000 71713000 2047900 30766000 1476 1240 1282 9233;9234;9235;9236;9237;9238;9239;9240 5985;5986;5987;5988;5989;5990;5991;5992;5993;5994;5995 5989 11 DQVTAQEIFQDNHEDGPTAK Unmodified 2242.0138 0.013818748 1591 Q53T09;P13010 XRCC5 X-ray repair cross-complementing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 47.701 47.971 3 0.00012064 17666 20181213_JW_Orientia_Karp_1_1 118.05 81.595 109990000 23732000 47624000 34289000 0 4135900 0 209050 0 1477 1591 1283 9241;9242;9243;9244;9245 5996;5997;5998 5996 3 DQYEQMAEK Oxidation (M) 1156.4707 0.47065351 795 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6;Q16195 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 22.688 23.02 2 0.00020194 4812 20181213_JW_Orientia_Karp_3_1 178.55 38.577 13304000 2171900 2893000 1018300 1066400 1041600 1519500 2389800 1203700 + 1478 795 1284 9246;9247;9248;9249;9250;9251;9252;9253 5999;6000;6001;6002;6003 6002 459 5 DRDMQQLDSNLNSTR Oxidation (M);2 Deamidation (NQ) 1809.7799 0.77991941 882 E7EVV3;Q96M13;Q8TC71-2;Q8TC71 SPATA18 Mitochondria-eating protein yes no 0 2 1 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 2 2 53.59 54.036 2 0.0037415 21081 20181213_JW_Orientia_Karp_1_1 106.4 51.047 78555000 11787000 16032000 0 23847000 0 21400000 4405900 1083000 1479 882 1285 9254;9255;9256;9257;9258;9259;9260;9261;9262 6004;6005;6006;6007;6008 6004 313;314 503 5 DRTDIQCLIPCAIDQDPYFR Unmodified 2495.1573 0.15732864 138 A0A024R6K8;P23381;P23381-2;H0YJP3 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 71.135 71.25 3 0.018415 32603 20181213_JW_Orientia_Karp_1_1 77.899 48.515 39720000 9500700 6981700 4886500 1842900 0 1241700 13148000 2118100 1480 138 1286 9263;9264;9265;9266;9267;9268;9269 6009 6009 1 DRVEDALHATR Unmodified 1281.6426 0.64256171 1296 Karp_01187 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 4 2 4 2 30.483 30.871 2;3 0.0037543 7460 20181213_JW_Orientia_Karp_2_2 125.36 86.179 30401000000 6489300000 6981600000 6593500000 906080000 743800000 4528400000 1722600000 2436000000 1481 1296 1287 9270;9271;9272;9273;9274;9275;9276;9277;9278;9279;9280;9281;9282;9283;9284;9285;9286;9287;9288;9289;9290;9291;9292;9293;9294;9295 6010;6011;6012;6013;6014;6015;6016;6017;6018;6019;6020;6021 6016 12 DRVTDALNATR Unmodified 1230.6317 0.63166267 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 1 By MS/MS 1 37.759 37.759 3 0.0038414 12240 20181213_JW_Orientia_Karp_1_1 110.93 49.719 16734000 16734000 0 0 0 0 0 0 0 1482 81 1288 9296 6022 6022 1 DSALETLQGQLEEK Unmodified 1559.7679 0.76788138 118 A0A024R5M9;Q4LE64;Q14980-2;Q14980;Q59HB8;Q7Z757;Q14980-4;Q14980-3;Q96HN5;H0YFY6;A0A024R5G4 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 58.918 59.167 2 1.6637E-07 24830 20181213_JW_Orientia_Karp_1_2 182.23 92.556 34683000 15121000 13461000 4859400 1241200 0 0 0 0 1483 118 1289 9297;9298;9299;9300 6023;6024 6023 2 DSASAPAVGYNNLHNK Unmodified 1656.7856 0.78559713 1416 Karp_02253 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 2 2 2 1 34.345 34.732 2;3 0.00084408 10139 20181213_JW_Orientia_Karp_1_3 130.1 87.855 128290000 44127000 6870700 44897000 8949500 5373200 0 16229000 1849100 1484 1416 1290 9301;9302;9303;9304;9305;9306;9307;9308;9309;9310;9311;9312 6025;6026;6027;6028;6029 6027 5 DSDLSHVQNK Unmodified 1141.5364 0.53636531 475 Q05CK9;B2R8Z8;O60506-4;O60506-3;O60506-2;O60506;Q59GL1;F6UXX1 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 21.564 21.93 2 0.011745 4777 20181213_JW_Orientia_Karp_1_1 90.15 49.268 3990300 1324200 928330 0 317560 284040 584960 400300 150960 1485 475 1291 9313;9314;9315;9316;9317;9318;9319 6030 6030 1 DSELALFK Unmodified 921.48075 0.48074791 1431 Karp_02388 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 58.398 58.67 2 0.0042016 22193 20181213_JW_Orientia_Karp_2_2 138.83 69.393 43413000 26436000 4897200 0 0 2541200 8874100 0 664620 1486 1431 1292 9320;9321;9322;9323;9324 6031;6032;6033;6034 6032 4 DSGLVISPADGR Unmodified 1185.599 0.59896556 1119 Karp_00311 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.754 50.055 2 0.0053922 17515 20181213_JW_Orientia_Karp_2_2 128.81 70.851 448930000 161210000 78592000 97475000 49998000 20032000 34053000 0 7572800 1487 1119 1293 9325;9326;9327;9328;9329;9330;9331 6035;6036;6037;6038;6039;6040;6041;6042;6043 6040 9 DSINCGAVVR Unmodified 1089.5237 0.52369213 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS 1 36.183 36.533 2 0.0025807 11103 20181213_JW_Orientia_Karp_1_2 143.37 56.703 0 0 0 0 0 0 0 0 0 1488 1168 1294 9332 6044 6044 1 DSISPALIQFEEK Unmodified 1475.7508 0.75077476 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 64.754 64.955 2 7.2457E-25 28383 20181213_JW_Orientia_Karp_1_2 232.56 138.15 147210000 58501000 19921000 30295000 5082600 21635000 10434000 0 1344300 1489 1058 1295 9333;9334;9335;9336;9337;9338;9339 6045;6046;6047;6048;6049;6050;6051 6046 7 DSITLISMK Oxidation (M) 1022.5318 0.5317972 967 H0Y8G8;Q19T08 ECSCR Endothelial cell-specific chemotaxis regulator yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.316 48.585 2 0.0017751 16645 20181213_JW_Orientia_Karp_2_1 117.89 43.762 25806000 5880900 8015700 6783700 3325900 0 1799800 0 0 1490 967 1296 9340;9341;9342;9343;9344;9345 6052;6053;6054;6055 6053 540 4 DSLDPSFTHAMQLLTAEIEK Unmodified 2245.0936 0.093648974 465 B2R7B5;Q07666-3;Q07666;B4DDX2;Q07666-2;B4E043 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 74.762 74.794 3 0.0039274 34849 20181213_JW_Orientia_Karp_1_2 86.213 53.648 32812000 0 13506000 19105000 201470 0 0 0 0 1491 465 1297 9346;9347;9348 6056;6057 6056 2 DSLIFLVDASK Unmodified 1206.6496 0.64960415 48 A0A024R1N4;P12956;B2RDN9;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 71.515 71.581 2 5.5199E-07 26049 20181213_JW_Orientia_Karp_3_1 185.61 138.03 46414000 10262000 10150000 9619200 0 3461900 1920000 11001000 0 1492 48 1298 9349;9350;9351;9352;9353;9354 6058;6059;6060;6061;6062;6063 6063 6 DSLLQDGEFSMDLR Oxidation (M) 1640.7352 0.73520105 1567 P07737;K7EJ44 PFN1 Profilin-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.946 63.205 2 4.0077E-73 23789 20181213_JW_Orientia_Karp_3_2 295.26 219.61 583140000 145740000 84392000 97004000 26908000 122940000 68515000 0 37644000 1493 1567 1299 9355;9356;9357;9358;9359;9360;9361 6064;6065;6066;6067;6068;6069;6070;6071 6071 1185 8 DSLLQDGEFSMDLR Unmodified 1624.7403 0.74028642 1567 P07737;K7EJ44 PFN1 Profilin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.053 71.159 2 1.5603E-88 32039 20181213_JW_Orientia_Karp_1_3 313.52 239.36 440200000 93674000 43086000 84747000 27426000 76494000 26995000 87780000 0 1494 1567 1299 9362;9363;9364;9365;9366;9367;9368 6072;6073;6074;6075;6076;6077;6078 6074 7 DSLSVNEFK Unmodified 1037.5029 0.50293991 1957 Q99584;D3DV53 S100A13 Protein S100-A13 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 46.911 47.184 2 0.0014161 16255 20181213_JW_Orientia_Karp_2_3 125.82 63.271 75775000 16042000 12734000 9964600 12430000 9213600 12659000 0 2731600 1495 1957 1300 9369;9370;9371;9372;9373;9374;9375 6079;6080;6081 6081 3 DSMIWDCTCIGAGR Oxidation (M) 1656.6694 0.66944644 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 56.502 56.817 2 7.7985E-12 22922 20181213_JW_Orientia_Karp_1_3 202.31 173.24 93528000 24469000 15852000 36462000 7624300 5531500 3022900 0 566170 1496 85 1301 9376;9377;9378;9379;9380;9381;9382 6082;6083;6084;6085;6086;6087 6084 93 6 DSMIWDCTCIGAGR Unmodified 1640.6745 0.67453182 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 2 1 1 1 62.481 62.705 2 0.012835 27335 20181213_JW_Orientia_Karp_1_1 107.18 69.562 33534000 8061200 4079800 21130000 263600 0 0 0 0 1497 85 1301 9383;9384;9385;9386;9387 6088;6089 6088 2 DSNINEIYELSR Unmodified 1451.6892 0.68923713 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 58.181 58.481 2 8.8953E-17 24332 20181213_JW_Orientia_Karp_1_2 220.29 156.76 117440000 30330000 29453000 37809000 8415100 11362000 0 69683 0 1498 1318 1302 9388;9389;9390;9391;9392;9393;9394;9395 6090;6091;6092;6093;6094;6095;6096;6097 6092 8 DSNNLCLHFNPR Unmodified 1485.6783 0.67829529 1576 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 By MS/MS 1 44.777 45.428 2 0.0042285 15012 20181213_JW_Orientia_Karp_3_1 122.26 45.793 1190600 0 0 0 0 0 0 1190600 0 1499 1576 1303 9396 6098 6098 1 DSPETFLINIVK Unmodified 1374.7395 0.73948179 1154 Karp_00560 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 73.787 73.828 2 1.8816E-11 27444 20181213_JW_Orientia_Karp_3_1 223.87 142.35 51389000 14337000 14876000 16170000 0 0 0 5737300 267650 1500 1154 1304 9397;9398;9399;9400;9401 6099;6100 6100 2 DSPSVWAAVPGK Unmodified 1212.6139 0.61388734 1567 P07737;CON__P02584;I3L3D5 PFN1 Profilin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.967 55.324 2 4.434E-11 20337 20181213_JW_Orientia_Karp_2_2 218.58 180.77 1338300000 285010000 205390000 343810000 132230000 186600000 182330000 36477 2900300 1501 1567 1305 9402;9403;9404;9405;9406;9407;9408;9409 6101;6102;6103;6104;6105;6106;6107 6105 7 DSPYMAFIHPATGGYNPDLVR Oxidation (M) 2336.0896 0.089566649 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 60.928 61.238 3 0.00091421 26371 20181213_JW_Orientia_Karp_1_1 105.01 80.052 122550000 41608000 37745000 21499000 0 13120000 0 2557500 6023800 1502 1520 1306 9410;9411;9412;9413;9414;9415 6108;6109;6110 6108 1127 3 DSPYMAFIHPATGGYNPDLVR Unmodified 2320.0947 0.094652027 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 65.224 65.496 2;3 0.00012097 28342 20181213_JW_Orientia_Karp_1_3 116.61 87.861 99323000 0 37139000 39587000 1110800 0 0 20434000 1052600 1503 1520 1306 9416;9417;9418;9419;9420;9421;9422 6111;6112;6113 6112 3 DSQVPGPIGCNCDPQGSVSSQCDAAGQCQCK Unmodified 3366.3428 0.34279229 195 A0A024RAB6;P98160;H0Y5A9 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS 1 1 47.972 48.377 3 2.0946E-07 17405 20181213_JW_Orientia_Karp_1_3 107.32 100.22 10562000 0 0 5954800 0 0 0 0 4607000 1504 195 1307 9423;9424 6114;6115 6114 2 DSSLYVPPGITGTVIDVR Unmodified 1887.9942 0.99419293 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 73.084 73.143 2 0.011504 33712 20181213_JW_Orientia_Karp_1_2 98.531 67.981 392480000 90237000 75107000 122950000 0 22658000 13413000 56619000 11495000 1505 1170 1308 9425;9426;9427;9428;9429;9430;9431 6116;6117;6118 6117 3 DSTLIMQLLR Oxidation (M) 1204.6486 0.64855829 1728;824;1650;556;1651;1635;45 B4DE78;P61981;B3KNB4;B4DHC4;Q9H4N8;V9HWD6;P31946-2;P31946;B5BU24;P31947-2;P31947;V9HW98;P62258;G9K389;G9K388;P62258-2;B7ZA86;K7EM20;D0PNI1;P63104;E7EX29;B0AZS6;P63104-2;B7Z2E6;H0YB80;Q2F831;P27348;B4DMT8;B4DY04;Q53S41;A0A024R1K7;Q04917;B2R6N6 YWHAG;HEL-S-1;YWHAB;SFN;HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAZ;YWHAQ;YWHAH 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein eta no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 3 1 70.009 70.138 2 4.3557E-13 27876 20181213_JW_Orientia_Karp_2_2 224.36 120.81 455020000 49083000 40109000 50242000 16470000 48262000 46984000 203870000 0 1506 556;1650;1651;1728;824;1635;45 1309 9432;9433;9434;9435;9436;9437;9438;9439;9440;9441;9442;9443 6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129 6124 27 11 DSTLIMQLLR Unmodified 1188.6536 0.65364367 1728;824;1650;556;1651;1635;45 B4DE78;P61981;B3KNB4;B4DHC4;Q9H4N8;V9HWD6;P31946-2;P31946;B5BU24;P31947-2;P31947;V9HW98;P62258;G9K389;G9K388;P62258-2;B7ZA86;K7EM20;D0PNI1;P63104;E7EX29;B0AZS6;P63104-2;B7Z2E6;H0YB80;Q2F831;P27348;B4DMT8;B4DY04;Q53S41;A0A024R1K7;Q04917;B2R6N6 YWHAG;HEL-S-1;YWHAB;SFN;HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAZ;YWHAQ;YWHAH 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein eta no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 73.743 73.76 2 5.2355E-13 29819 20181213_JW_Orientia_Karp_2_2 224.36 84.003 537740000 216140000 133980000 82784000 0 13475000 3419700 87949000 0 1507 556;1650;1651;1728;824;1635;45 1309 9444;9445;9446;9447;9448;9449;9450 6130;6131;6132;6133;6134;6135;6136 6134 7 DSTSLNVEVPNLR Unmodified 1442.7365 0.73652168 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 59.484 59.801 2 2.9777E-11 25085 20181213_JW_Orientia_Karp_1_2 199.19 121.99 700690000 123170000 117130000 125410000 95289000 113000000 106290000 20417000 0 1508 1318 1310 9451;9452;9453;9454;9455;9456;9457;9458;9459;9460 6137;6138;6139;6140;6141;6142;6143;6144 6138 8 DSVELSMFLDR Unmodified 1310.6177 0.61765209 1390 Karp_02139 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 71.122 71.171 2 1.3633E-05 32040 20181213_JW_Orientia_Karp_1_3 172.88 103.06 35912000 26690000 0 9221500 0 0 0 0 0 1509 1390 1311 9461;9462 6145;6146 6146 2 DSVELSMFLDR Oxidation (M) 1326.6126 0.61256672 1390 Karp_02139 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 64.983 65.184 2 0.00090888 25826 20181213_JW_Orientia_Karp_2_3 128.03 81.573 39545000 11423000 3346800 9901500 1062000 7350600 5246700 0 1214400 1510 1390 1311 9463;9464;9465;9466;9467;9468;9469;9470 6147;6148;6149;6150 6150 986 4 DSVLNEQYNTWVSVSTINK Unmodified 2196.0699 0.069877064 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 2 68.964 69.115 2;3 3.5533E-10 27243 20181213_JW_Orientia_Karp_3_2 222.75 168.75 196000000 50956000 3727400 51980000 661680 19599000 12213000 39791000 17076000 1511 1396 1312 9471;9472;9473;9474;9475;9476;9477;9478;9479;9480;9481;9482;9483;9484 6151;6152;6153;6154;6155;6156;6157 6157 7 DSVLNEQYNTWVSVSTINK Deamidation (NQ) 2197.0539 0.053892649 1396 Karp_02152 yes yes 0 1 0 0 By MS/MS 1 70.347 70.347 2 0.029523 31954 20181213_JW_Orientia_Karp_1_1 82.663 39.281 0 0 0 0 0 0 0 0 0 1512 1396 1312 9485 6158 6158 903 1 DSVNEPMYTGIK Oxidation (M) 1368.6231 0.6231314 1380 Karp_02117 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 41.873 42.203 2 1.771E-05 14477 20181213_JW_Orientia_Karp_1_1 174.57 106.35 174840000 39492000 31925000 44568000 14656000 0 0 44199000 0 1513 1380 1313 9486;9487;9488;9489;9490 6159;6160;6161;6162 6159 977 4 DSVNEPMYTGIK Unmodified 1352.6282 0.62821678 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS 1 47.744 47.744 2 0.0022054 17650 20181213_JW_Orientia_Karp_1_1 172.21 111.3 0 0 0 0 0 0 0 0 0 1514 1380 1313 9491 6163 6163 1 DSVVAGFQWATK Unmodified 1307.651 0.65100113 1593 P13639;Q8TA90;B4DPU3;Q6W6M8 EEF2 Elongation factor 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 62.021 62.293 2 0.0014188 27058 20181213_JW_Orientia_Karp_1_1 128.85 82.385 33845000 21883000 0 0 1512800 5216000 3536900 0 1696400 1515 1593 1314 9492;9493;9494;9495;9496;9497;9498 6164;6165;6166;6167 6164 4 DSVVITYIIDEDKR Unmodified 1664.8621 0.86211612 1444 Karp_02422 yes yes 0 0 0 1 By MS/MS By matching By matching 1 1 1 60.587 60.77 3 0.016767 26181 20181213_JW_Orientia_Karp_1_1 89.43 59.939 16330000 8261100 1859200 6209300 0 0 0 0 0 1516 1444 1315 9499;9500;9501 6168 6168 1 DSYVGDEAQSK Unmodified 1197.515 0.51496116 1717;1743;351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;B3KW67;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;B4DUI8;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;G5E9R0;E7EVS6;C9JZR7;C9JUM1;C9JTX5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;A1E282 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 29.046 29.404 2 8.7131E-26 7965 20181213_JW_Orientia_Karp_1_1 251.56 215.65 403420000 194330000 64033000 53010000 31397000 9351400 6293300 31343000 13662000 1517 351;1717;1743 1316 9502;9503;9504;9505;9506;9507;9508;9509 6169;6170;6171;6172;6173;6174;6175;6176 6169 8 DSYVGDEAQSKR Unmodified 1353.6161 0.61607219 1717;1743;351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;B3KW67;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;B4DUI8;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;G5E9R0;E7EVS6;C9JZR7;C9JUM1;C9JTX5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;A1E282 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 23.657 24.007 2 0.004762 5330 20181213_JW_Orientia_Karp_1_2 133.42 79.823 6028300 0 2972800 0 739330 673430 445560 1197200 0 1518 351;1717;1743 1317 9510;9511;9512;9513;9514;9515 6177;6178 6177 2 DTALSAYEFFLK Unmodified 1403.6973 0.69728262 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 74.058 74.099 2 2.3474E-07 34063 20181213_JW_Orientia_Karp_1_3 185.33 124.17 152740000 89961000 23977000 35112000 2866800 0 0 0 819940 1519 1449 1318 9516;9517;9518;9519;9520;9521 6179;6180;6181;6182;6183;6184 6181 6 DTCVILLPAK Unmodified 1128.6213 0.62128091 1342 Karp_01516 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 59.04 59.223 2 7.7562E-05 24540 20181213_JW_Orientia_Karp_1_3 149.65 89.634 45296000 16355000 7746700 21194000 0 0 0 0 0 1520 1342 1319 9522;9523;9524;9525 6185;6186;6187;6188 6187 4 DTDIVDEAIYYFK Unmodified 1590.7454 0.74535503 445 B4DM63;B2R4D5;O15145;Q2LE71;C9JZD1;F8VR50 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 75.421 75.447 2 5.135E-12 35187 20181213_JW_Orientia_Karp_1_1 208.6 145.42 128910000 53926000 20320000 29394000 0 0 8132400 14236000 2905900 1521 445 1320 9526;9527;9528;9529;9530;9531;9532 6189;6190;6191;6192;6193;6194 6189 6 DTDSEEEIR Unmodified 1092.4571 0.45711193 497 Q9BRL5;B4DJ51;B2RDW0;H0Y7A7;P62158;E7ETZ0;E7EMB3;A8K1M2;G3V361;Q96HY3;G3V226 CALM3;CALM2;CALM1 Calmodulin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 28.443 28.765 2 6.4639E-06 7684 20181213_JW_Orientia_Karp_1_1 200.16 87.746 30856000 15239000 2183900 3813000 2011600 2927300 2714100 1967900 0 1522 497 1321 9533;9534;9535;9536;9537;9538;9539 6195 6195 1 DTGENLETPSSFTIK Unmodified 1637.7784 0.77844607 640 B4DU18;Q59EA3;P33151;I3L1J2;Q4VAI4;P33151-2 CDH5 Cadherin-5 yes no 0 0 0 0 By MS/MS By matching 1 1 56.753 56.978 2 0.0038158 23102 20181213_JW_Orientia_Karp_1_3 113.07 60.79 14747000 0 0 9718100 0 5029000 0 0 0 1523 640 1322 9540;9541 6196 6196 1 DTGIFLDLMHLK Unmodified 1401.7326 0.73262227 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;P12956-2;F5H1I8;B4E356 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 72.483 72.603 2 0.038649 33550 20181213_JW_Orientia_Karp_1_1 74.841 42.521 19511000 11597000 7583300 0 0 0 0 0 330680 1524 48 1323 9542;9543;9544 6197 6197 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK Unmodified 3932.7097 0.7096574 1672 P43487-2;P43487;C9JJ34;B7Z6U1;B4DE76 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 55.753 56.019 4 0.027302 20904 20181213_JW_Orientia_Karp_2_1 39.143 24.258 174230000 25998000 22432000 20047000 24949000 43074000 37730000 0 0 1525 1672 1324 9545;9546;9547;9548;9549;9550 6198 6198 1 DTHKSEIAHR Unmodified 1192.5949 0.59488324 792 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2.9862 3.286 3 0.010487 406 20181213_JW_Orientia_Karp_3_2 110.38 60.028 406180 0 0 0 227120 0 179060 0 0 + 1526 792 1325 9551;9552;9553;9554 6199;6200;6201;6202 6202 4 DTLTSRPAQGVVTTLENVSPPR Unmodified 2337.2288 0.22883732 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 57.264 57.609 3 0.0026265 23495 20181213_JW_Orientia_Karp_1_3 99.407 77.505 104320000 25678000 31931000 23912000 5774600 6680900 4943000 385510 5013700 1527 85 1326 9555;9556;9557;9558;9559;9560;9561;9562 6203;6204;6205;6206;6207;6208 6206 6 DTLYEAVR Unmodified 965.48181 0.48181054 1738 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 43.372 43.663 2 0.0042181 15335 20181213_JW_Orientia_Karp_1_1 135.77 56.298 54751000 15165000 20632000 17155000 0 0 146490 1652200 0 1528 1738 1327 9563;9564;9565;9566;9567 6209;6210 6209 2 DTPDEPWAFPAR Unmodified 1400.6361 0.63607935 451 B2R5U1;B4E299;B3KU67;Q59FF0;Q7KZF4;I6TRR8 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 62.582 62.791 2 0.012534 27058 20181213_JW_Orientia_Karp_1_2 93.667 58.229 43818000 18567000 11293000 12441000 323090 0 1194300 0 0 1529 451 1328 9568;9569;9570;9571;9572 6211;6212;6213 6212 3 DTPENNPDTPFDFTPENYK Unmodified 2239.9546 0.95457253 383 Q9UEH5;Q6IPW4;Q6IB76;A8K750;E7EPT4;P19404 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 0 0 0 0 By MS/MS 1 65.193 65.291 2 7.5104E-07 28242 20181213_JW_Orientia_Karp_1_3 152 124.67 7416500 0 0 7416500 0 0 0 0 0 1530 383 1329 9573 6214 6214 1 DTQESLLPR Unmodified 1057.5404 0.54038805 1366 Karp_01876 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 46.662 46.977 2 0.010461 15652 20181213_JW_Orientia_Karp_2_2 93.178 41.324 56421000 0 39868000 0 0 5635400 7500400 0 3417800 1531 1366 1330 9574;9575;9576;9577 6215 6215 1 DTQLQQIVDKTIINADKDGDGR 3 Deamidation (NQ) 2445.1871 0.18709167 843 F6U1T9;D3YTA9;H7BYZ3;Q86YQ0;P63098 PPP3R1;HZGJ Calcineurin subunit B type 1 yes no 0 3 0 2 By matching By MS/MS 1 1 70.571 70.745 3 0.030558 25410 20181213_JW_Orientia_Karp_3_1 81.639 25.292 43063000 0 0 5310900 0 0 0 37752000 0 1532 843 1331 9578;9579 6216 6216 1673;1674;1675 1 DTQSGSLLFIGR Unmodified 1292.6725 0.67246486 115 A0A024R5K8;P50454;B4DN87;A8K259;E9PKH2;H0YEP8 SERPINH1 Serpin H1 yes no 0 0 0 0 By MS/MS 1 63.926 64.275 2 0.0034827 25390 20181213_JW_Orientia_Karp_2_1 131.83 60.447 0 0 0 0 0 0 0 0 0 1533 115 1332 9580 6217 6217 1 DTSEDIEELVEPVAAHGPK Unmodified 2034.9746 0.9745797 454 B2R6D0;Q99460-2;Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS 2 61.952 62.302 3 0.0020718 26847 20181213_JW_Orientia_Karp_1_2 104.16 49.065 0 0 0 0 0 0 0 0 0 1534 454 1333 9581;9582 6218;6219 6219 2 DTSENADGQSDENK Unmodified 1508.5863 0.5862882 418 D6REM6;A8MXP9;P43243;Q68D11;Q5CZA7;B4DF66;B3KM87;B4DRS1;P43243-2;Q68E03;Q9H4N1 MATR3;DKFZp686K23100;DKFZp686K0542;DKFZp686L22104 Matrin-3 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 16.684 16.917 2 0.0009681 2734 20181213_JW_Orientia_Karp_1_3 136.38 92.742 1289100 0 346700 777090 165280 0 0 0 0 1535 418 1334 9583;9584;9585 6220;6221 6221 2 DTSEQNIEETAVK Unmodified 1462.6787 0.67873203 1362 Karp_01816 yes yes 0 0 0 0 By MS/MS 1 38.637 38.836 2 0.0021734 12260 20181213_JW_Orientia_Karp_1_3 124.6 72.432 4171000 0 0 4171000 0 0 0 0 0 1536 1362 1335 9586 6222 6222 1 DTSTQTASVLTAVK Unmodified 1420.7409 0.74093835 1417 Karp_02254 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 50.148 50.493 2 1.396E-34 19424 20181213_JW_Orientia_Karp_1_1 244.73 162.7 598880000 174550000 131920000 100280000 62461000 51739000 57305000 17659000 2964100 1537 1417 1336 9587;9588;9589;9590;9591;9592;9593;9594 6223;6224;6225;6226;6227;6228;6229;6230 6223 8 DTTIINNTPIDYLDFASPESGLGSK Unmodified 2667.2916 0.29155674 1459 Karp_02609 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 75.418 75.43 3 0.0023476 35216 20181213_JW_Orientia_Karp_1_1 69.981 29.359 29730000 13206000 6311000 0 0 3750900 0 6462200 0 1538 1459 1337 9595;9596;9597;9598 6231;6232 6231 2 DTTSDYEK Unmodified 957.39272 0.39272076 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 21.424 21.661 2 0.040428 4631 20181213_JW_Orientia_Karp_1_1 76.774 51.324 7587700 1865900 0 0 2297600 1379900 2044300 0 0 1539 1296 1338 9599;9600;9601;9602 6233 6233 1 DTVDFQANYDGLEQEPK Unmodified 1967.8749 0.87486565 1139 Karp_00451 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 57.639 57.839 2 4.0237E-101 24251 20181213_JW_Orientia_Karp_1_1 312.91 206.76 123040000 32700000 36428000 37910000 0 16001000 0 0 0 1540 1139 1339 9603;9604;9605;9606 6234;6235;6236;6237;6238 6234 5 DTVIFSSK Unmodified 895.4651 0.46509784 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS By matching 1 1 44.119 44.218 2 0.013215 15653 20181213_JW_Orientia_Karp_1_1 98.629 19.161 8721800 4917600 0 3804200 0 0 0 0 0 1541 1320 1340 9607;9608 6239 6239 1 DTYLSHFNPR Unmodified 1248.5887 0.58873523 1665 Q6FH49;P40261 NNMT Nicotinamide N-methyltransferase yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 43.002 43.185 2 0.011889 14654 20181213_JW_Orientia_Karp_1_2 89.886 59.199 39708000 17078000 15625000 7004600 0 0 0 0 0 1542 1665 1341 9609;9610;9611 6240 6240 1 DTYSWLLK Unmodified 1024.5229 0.52294707 1611 P20591;F8W8T1;Q8NAA8 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 63.896 64.099 2 0.0048263 27949 20181213_JW_Orientia_Karp_1_2 125.25 53.114 14547000 8650600 3880100 0 0 0 1615100 0 401380 1543 1611 1342 9612;9613;9614;9615;9616 6241;6242;6243 6242 3 DTYVSSFPR Unmodified 1070.5033 0.50327426 722 B7Z4W0;P23193-2;P23193 TCEA1 Transcription elongation factor A protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 47.237 47.512 2 0.006374 17101 20181213_JW_Orientia_Karp_1_2 101.25 53.293 44377000 11011000 15042000 13771000 4552800 0 0 0 0 1544 722 1343 9617;9618;9619;9620 6244 6244 1 DVAEEIANYRPTLDTLHEQASALPQEHAESPDVR Unmodified 3800.8242 0.82417407 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 58.832 59.081 4 0.0056938 25203 20181213_JW_Orientia_Karp_1_1 52.255 35.107 67471000 21323000 20804000 20702000 4642400 0 0 0 0 1545 506 1344 9621;9622;9623;9624 6245;6246 6245 2 DVAQIFNNILR Unmodified 1301.7092 0.70918471 87 Q7Z4X0;A0A024R496;Q9Y376 CAB39 Calcium-binding protein 39 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 74.195 74.216 2 0.0046285 34372 20181213_JW_Orientia_Karp_1_2 106.88 44.714 12318000 5914600 2300600 2769000 0 0 550530 0 783740 1546 87 1345 9625;9626;9627;9628;9629 6247;6248;6249 6248 3 DVAVNNLLQSIK Unmodified 1312.7351 0.73506511 1385 Karp_02124 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 65.511 65.749 2 0.011848 28547 20181213_JW_Orientia_Karp_1_3 107.34 70.279 13089000 0 5574900 3485000 0 0 1082900 2945900 0 1547 1385 1346 9630;9631;9632;9633 6250 6250 1 DVDAAYMNK Oxidation (M) 1041.4437 0.44371047 799;341;679;793;805;809 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__O95678;O95678;B4E1T1;B4DL32;H0YIN9;CON__P04259;P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;B2R853;B4DRY0;CON__Q14CN4-1;CON__Q6IME9;Q14CN4-3;Q14CN4-2;Q14CN4;B4DXK4 KRT6A;KRT75;KRT5;KRT6B;KRT6C;KRT72 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 72 no no 0 0 1 0 By matching By matching By MS/MS 1 1 1 29.128 29.478 2 0.0073076 7194 20181213_JW_Orientia_Karp_2_3 96.492 38.633 2785900 0 0 0 1830700 526430 428750 0 0 + 1548 341;679;793;799;805;809 1347 9634;9635;9636 6251 6251 228 1 DVDEIEAWISEK Unmodified 1432.6722 0.67219008 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 71.453 71.515 2 0.0004155 28739 20181213_JW_Orientia_Karp_2_2 152.7 91.535 12937000 0 0 5759600 874040 3954200 2349100 0 0 1549 316 1348 9637;9638;9639;9640;9641 6252;6253;6254;6255;6256 6256 5 DVDETISWIK Unmodified 1204.5976 0.59756858 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 63.209 63.308 2 0.0024331 27676 20181213_JW_Orientia_Karp_1_1 158.76 92.683 0 0 0 0 0 0 0 0 0 1550 316 1349 9642;9643 6257;6258 6257 2 DVDIIDHHDNTYTVK Unmodified 1783.8377 0.83769228 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 41.96 42.27 3 0.0054963 13503 20181213_JW_Orientia_Karp_3_1 89.507 46.549 244810000 82205000 46223000 74318000 0 4429100 0 36120000 1510800 1551 1615 1350 9644;9645;9646;9647;9648;9649 6259;6260;6261;6262;6263 6263 5 DVDLEFLAK Unmodified 1048.5441 0.54407645 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 66.163 66.39 2 0.001215 28918 20181213_JW_Orientia_Karp_1_3 128.69 71.405 50901000 0 10336000 17738000 0 4363500 0 0 18463000 1552 1708 1351 9650;9651;9652;9653;9654 6264;6265;6266;6267;6268 6264 5 DVDNAYMIK Oxidation (M) 1083.4907 0.49066067 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.284 40.604 2 0.00020593 12476 20181213_JW_Orientia_Karp_2_1 167.23 127.58 161050000 25564000 26224000 20849000 12451000 6433100 3460700 57666000 8398700 + 1553 804;1657 1352 9655;9656;9657;9658;9659;9660;9661;9662 6269;6270;6271;6272;6273;6274 6271 467 6 DVDNAYMIK Unmodified 1067.4957 0.49574604 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.64 46.883 2 0.0025189 16523 20181213_JW_Orientia_Karp_1_3 116.05 75.782 36454000 5962900 13739000 10851000 0 1960100 2904500 0 1036200 + 1554 804;1657 1352 9663;9664;9665;9666;9667;9668 6275 6275 1 DVEDEETWIR Unmodified 1290.5728 0.57281039 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 54.479 54.746 2 0.0296 20140 20181213_JW_Orientia_Karp_2_1 78.264 45.265 9739800 6130900 0 0 1641500 1967400 0 0 0 1555 316 1353 9669;9670;9671 6276 6276 1 DVEDEILWVGER Unmodified 1458.6991 0.69907354 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 71.54 71.59 2 0.0038513 32735 20181213_JW_Orientia_Karp_1_1 112.94 66.548 35835000 9242700 12882000 11223000 0 0 2486400 0 0 1556 506 1354 9672;9673;9674;9675 6277;6278;6279;6280 6277 4 DVEITDISLDYLIDR Unmodified 1778.8938 0.89381018 1112 Karp_00294 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.129 76.123 2 1.69E-08 30852 20181213_JW_Orientia_Karp_3_2 210.15 160 65165000 15736000 6098300 13042000 6594900 7387200 2576000 9985000 3745900 1557 1112 1355 9676;9677;9678;9679;9680;9681;9682;9683 6281;6282;6283;6284;6285;6286;6287 6287 7 DVFLGMFLYEYAR Unmodified 1622.7803 0.78030075 620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B7WNR0;B4DPR2;C9JKR2;H0YA55;D6RHD5;P02768-2 ALB Serum albumin yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 77.313 77.304 2 0.0032739 31863 20181213_JW_Orientia_Karp_2_1 127.83 63.887 20791000 0 2950000 5488700 3832400 2453000 1438800 4628000 0 + 1558 620 1356 9684;9685;9686;9687;9688;9689;9690 6288;6289 6289 2 DVGHTLLIGPTGAGK Unmodified 1434.7831 0.78307794 1290 Karp_01163 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 48.142 48.479 3 0.0045556 16838 20181213_JW_Orientia_Karp_2_3 93.494 49.814 34150000 0 16538000 9608000 4888400 0 3115700 0 0 1559 1290 1357 9691;9692;9693;9694 6290;6291 6291 2 DVGRPQPGR Unmodified 980.51518 0.51517635 1662 P37802;P37802-2;X6RJP6;B7Z5A2 TAGLN2 Transgelin-2 yes no 0 0 0 1 By MS/MS By MS/MS By matching 1 1 1 19.538 19.888 2 0.024023 3584 20181213_JW_Orientia_Karp_2_3 131.03 51.58 12910000 0 0 0 0 0 6330300 6579700 0 1560 1662 1358 9695;9696;9697 6292;6293 6293 2 DVHPTHYGR Unmodified 1080.5101 0.51009098 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 2 1 15.973 16.297 2;3 0.001599 2938 20181213_JW_Orientia_Karp_3_1 95.815 63.345 153500000 51958000 40630000 25212000 10029000 2925700 2254400 4741900 15753000 1561 1170 1359 9698;9699;9700;9701;9702;9703;9704;9705;9706;9707;9708;9709;9710 6294;6295;6296;6297;6298;6299;6300;6301 6300 7 DVIEAHLDIGGYPIIVR Unmodified 1879.0203 0.020348097 1450 Karp_02530 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 70.14 70.25 3 0.0037773 28448 20181213_JW_Orientia_Karp_2_3 135.86 93.985 29845000 7333800 0 5163100 0 4359900 2110600 10877000 0 1562 1450 1360 9711;9712;9713;9714;9715 6302;6303;6304;6305;6306 6305 5 DVIEEYFK Unmodified 1041.5019 0.50187728 1627 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 60.183 60.503 2 0.0042016 25594 20181213_JW_Orientia_Karp_1_2 138.83 74.258 379860000 55377000 33640000 90221000 23506000 81655000 68000000 23435000 4021900 1563 1627 1361 9716;9717;9718;9719;9720;9721;9722;9723 6307;6308;6309;6310;6311;6312;6313;6314;6315;6316 6308 10 DVIELTDDSFDK Unmodified 1395.6406 0.64055561 1802 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 62.328 62.601 2 2.4294E-07 27154 20181213_JW_Orientia_Karp_1_1 211.86 169 140780000 75353000 23520000 24559000 1434100 7916900 5558800 0 2434400 1564 1802 1362 9724;9725;9726;9727;9728;9729;9730 6317;6318;6319;6320;6321 6317 5 DVLLQVDDER Unmodified 1200.5986 0.59863121 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.325 53.641 2 0.0041049 21507 20181213_JW_Orientia_Karp_1_1 104.82 59.687 349450000 80694000 139320000 53669000 20127000 17963000 37401000 0 268920 1565 47 1363 9731;9732;9733;9734;9735;9736;9737 6322;6323;6324 6322 3 DVLLQVDDERR Unmodified 1356.6997 0.69974224 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 44.156 44.339 3 0.0353 15718 20181213_JW_Orientia_Karp_1_1 77.062 45.877 150430000 60639000 68489000 21303000 0 0 0 0 0 1566 47 1364 9738;9739;9740 6325 6325 1 DVNAAIATIK Unmodified 1014.571 0.5709599 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;B4DDU2;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;Q9UQM3;Q13748-2;Q6PEY2;Q8N532 TUBA1B;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.85 49.151 2 4.4909E-06 18555 20181213_JW_Orientia_Karp_1_1 173.24 81.609 617640000 139330000 205250000 121380000 68047000 17907000 45603000 0 20124000 1567 512;1887 1365 9741;9742;9743;9744;9745;9746;9747 6326;6327;6328;6329;6330;6331;6332;6333;6334 6326 9 DVNQQEFVR Unmodified 1133.5465 0.54653606 433 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 RPS19 40S ribosomal protein S19 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 39.128 39.566 2 0.00098197 12048 20181213_JW_Orientia_Karp_2_1 132.01 61.098 101140000 70869000 0 0 15423000 0 0 14849000 0 1568 433 1366 9748;9749;9750;9751;9752;9753;9754 6335;6336;6337;6338;6339;6340 6338 6 DVPDLTLIDLPGITR Unmodified 1636.9036 0.903587 1611 P20591;F8W8T1;Q8NAA8;P20591-2;H9KVC7;H9KVC9 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.766 76.76 2 8.2939E-49 36191 20181213_JW_Orientia_Karp_1_2 260.57 204.77 339270000 102790000 57388000 90643000 7748300 7914100 4811100 61087000 6890100 1569 1611 1367 9755;9756;9757;9758;9759;9760;9761;9762 6341;6342;6343;6344;6345;6346;6347;6348 6342 8 DVQEIATVVVPK Unmodified 1296.7289 0.7289171 216 A0A024RB76;Q9BRT6 C12orf31;LLPH Protein LLP homolog yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 61.003 61.443 2 0.0041468 21398 20181213_JW_Orientia_Karp_3_1 120.57 65.221 11458000 0 0 0 879090 6618000 0 511280 3449800 1570 216 1368 9763;9764;9765;9766 6349;6350;6351 6350 3 DVQEIFR Unmodified 905.46068 0.46068117 245 Q5STU3;A0A024RCM3;B4DX78;O00148;Q13838;Q13838-2;F6WLT2;B4DP52;O00148-2;F6S4E6;F6TRA5;F6UJC5;K7EQN7;Q59G92;A0A024R7H0;B1Q2N1;B4DIZ8;B4DIJ6 DDX39B;hCG_2005638;DDX39A;DDX39 ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 50.41 50.593 2 0.015537 19154 20181213_JW_Orientia_Karp_1_2 110.81 35.497 16200000 5854300 6788400 3556900 0 0 0 0 0 1571 245 1369 9767;9768;9769 6352;6353 6352 2 DVQMLQDAISK Unmodified 1246.6227 0.62273747 146 A0A024R7B7;Q16543;A1L0W4;K7EQA9;K7EIU0;K7EL68 CDC37;MBD5 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 54.584 54.95 2 0.0013611 22061 20181213_JW_Orientia_Karp_1_2 124.12 79.775 28391000 0 14607000 11911000 1872500 0 0 0 0 1572 146 1370 9770;9771;9772 6354;6355 6354 2 DVSGEGVQQALLK Unmodified 1342.7092 0.70924429 1435 Karp_02393 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.834 52.135 2 2.4791E-11 18638 20181213_JW_Orientia_Karp_2_1 201.09 101.3 171220000 39825000 33799000 37521000 25350000 14510000 17831000 0 2382600 1573 1435 1371 9773;9774;9775;9776;9777;9778;9779 6356;6357;6358;6359;6360;6361;6362 6359 7 DVSLDFIDGK Unmodified 1107.5448 0.54480473 1444 Karp_02422 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.707 65.89 2 4.9061E-05 28620 20181213_JW_Orientia_Karp_1_3 155.84 66.702 43677000 13778000 8914400 10368000 0 3241600 5042500 2332700 0 1574 1444 1372 9780;9781;9782;9783;9784;9785 6363;6364;6365;6366;6367;6368;6369 6366 7 DVSLGDWEFGK Unmodified 1251.5772 0.57716749 106 A0A024R542;Q9C0C2;B3KXS7;Q9C0C2-2 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 68.268 68.462 2 0.00018675 30752 20181213_JW_Orientia_Karp_1_1 156.16 123.16 17460000 3688400 0 5096500 0 3329000 2438600 1391400 1516400 1575 106 1373 9786;9787;9788;9789;9790;9791 6370;6371;6372;6373;6374 6370 5 DVTHSTMNVFWEPVPGK Unmodified 1942.9247 0.92473315 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y4P7 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 61.789 61.972 3 0.033935 26278 20181213_JW_Orientia_Karp_1_3 74.786 38.194 12631000 6236800 2493800 3900500 0 0 0 0 0 1576 852 1374 9792;9793;9794 6375 6375 1 DVTHSTMNVFWEPVPGK Oxidation (M) 1958.9196 0.91964777 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y4P7 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 55.48 55.792 3 0.013686 20651 20181213_JW_Orientia_Karp_2_2 85.619 53.232 22412000 0 0 12814000 2778900 3271200 3547900 0 0 1577 852 1374 9795;9796;9797;9798 6376 6376 487 1 DVTLNVSDLK Unmodified 1102.587 0.58700389 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.834 55.156 2 4.9361E-12 20248 20181213_JW_Orientia_Karp_2_2 212.03 124.85 476460000 99164000 140480000 89588000 70387000 34584000 41980000 275100 0 1578 1428 1375 9799;9800;9801;9802;9803;9804;9805 6377;6378;6379;6380;6381;6382;6383 6382 7 DVTNTNVAESSSTR Unmodified 1479.6801 0.68012901 1080 Karp_00104 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 31.893 32.286 2 0.00030016 9366 20181213_JW_Orientia_Karp_1_1 174.72 116.13 28726000 7999900 9797800 6801600 1790800 0 0 1518600 817130 1579 1080 1376 9806;9807;9808;9809;9810;9811 6384;6385;6386;6387;6388 6384 5 DVVFNYLHATAFQGTPLAQAVEGPSENVR Unmodified 3129.552 0.55196238 1649 P31930;B4DUL5;B4DZB9 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 72.698 72.767 3 8.1524E-06 29366 20181213_JW_Orientia_Karp_2_2 98.747 73.299 258160000 53180000 54308000 64122000 13057000 15854000 10552000 30506000 16579000 1580 1649 1377 9812;9813;9814;9815;9816;9817;9818;9819 6389;6390;6391;6392;6393 6392 5 DVVILLDSITR Unmodified 1242.7184 0.71835242 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.708 73.717 2 1.9998E-05 30116 20181213_JW_Orientia_Karp_2_3 169.37 111.14 154310000 54363000 33767000 22618000 0 0 4962700 38598000 0 1581 1333 1378 9820;9821;9822;9823;9824;9825 6394;6395;6396;6397;6398;6399 6398 6 DVVTAAGDMLK Oxidation (M) 1134.5591 0.55907458 22 Q53FJ5;A0A024QZQ2;C9JIZ6;Q59EN5;B1AVU8;P07602;P07602-2;P07602-3;B4DRB7;Q5BJH1 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.158 45.458 2 0.00043737 15024 20181213_JW_Orientia_Karp_3_1 140.17 71.544 301980000 95582000 91014000 60434000 38497000 13514000 0 2936700 0 1582 22 1379 9826;9827;9828;9829;9830;9831;9832 6400;6401;6402;6403;6404 6404 15 5 DVVTAAGDMLK Unmodified 1118.5642 0.56415996 22 Q53FJ5;A0A024QZQ2;C9JIZ6;Q59EN5;B1AVU8;P07602;P07602-2;P07602-3;B4DRB7;Q5BJH1 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.014 57.291 2 0.00057426 23253 20181213_JW_Orientia_Karp_1_3 138.08 80.49 218230000 36860000 35116000 84515000 0 17147000 27919000 0 16678000 1583 22 1379 9833;9834;9835;9836;9837;9838;9839 6405;6406;6407;6408;6409;6410;6411 6407 7 DVVYLHR Unmodified 900.48175 0.48175096 1147 Karp_00502 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 34.703 35.004 2 0.028854 10780 20181213_JW_Orientia_Karp_1_1 90.986 33.883 32643000 22130000 0 0 0 1692400 0 8820500 0 1584 1147 1380 9840;9841;9842 6412 6412 1 DVWGIEGPIDAAFTR Unmodified 1645.81 0.81002097 815 CON__Q3ZBS7;B7Z553;D9ZGG2;P04004 VTN Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 74.749 74.78 2 0.0062931 30337 20181213_JW_Orientia_Karp_3_2 102.97 55.411 29485000 0 8963700 9134800 0 0 2271500 6719400 2395800 + 1585 815 1381 9843;9844;9845;9846;9847 6413;6414;6415 6415 3 DVYLSPR Unmodified 848.43922 0.43921744 1663 P38159;H0Y6E7;H3BT71;P38159-2;B4E352;Q2VIN3;Q96E39;B3KRG5;H3BUY5 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 41.208 41.537 2 0.030103 13177 20181213_JW_Orientia_Karp_3_1 89.369 24.566 39392000 17092000 7251800 8774200 1217600 0 0 5056500 0 1586 1663 1382 9848;9849;9850;9851;9852 6416 6416 1 DWILPSDYDHAEAEAR Unmodified 1886.8435 0.84350594 514 Q6IAW5;B3KQF5;O43852;O43852-3;B3KNG6;A0A024R755;O43852-2;O43852-4;O43852-5;H0Y875;O43852-9;O43852-15;B3KQK3 CALU Calumenin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.606 57.957 3 0.024536 22134 20181213_JW_Orientia_Karp_2_3 58.071 26.682 71067000 0 10787000 7492200 14424000 20008000 14750000 0 3604800 1587 514 1383 9853;9854;9855;9856;9857;9858 6417;6418;6419;6420;6421;6422 6421 6 DWNLADQIR Unmodified 1129.5516 0.55162144 1284 Karp_01155 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 59.561 59.849 2 0.0088596 23119 20181213_JW_Orientia_Karp_2_3 96.342 24.841 24334000 14762000 2173900 0 0 0 2924600 4473300 0 1588 1284 1384 9859;9860;9861;9862 6423 6423 1 DWNVDLIPK Unmodified 1098.571 0.5709599 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q5SX87;V9GYJ7;V9GYF8;Q5SX90;B4DHX4;P31150;Q5SX86;G5E9U5;B4DH24 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 67.322 67.503 2 0.0045404 29950 20181213_JW_Orientia_Karp_1_2 119.75 62.157 5778400 3486200 750550 852070 0 0 447990 0 241600 1589 596 1385 9863;9864;9865;9866;9867;9868 6424;6425 6425 2 DWRPAITIK Unmodified 1098.6186 0.61857879 365 H3BQQ9;A8K503;Q7KZS0;B0QYN7;P63279 UBE2I SUMO-conjugating enzyme UBC9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 49.063 49.138 3 0.0029844 18628 20181213_JW_Orientia_Karp_1_1 114.51 77.753 2545200 1820100 0 0 0 725150 0 0 0 1590 365 1386 9869;9870;9871;9872 6426;6427;6428;6429 6426 4 DWSHYFK Unmodified 981.43447 0.43446642 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 46.08 46.27 2 0.018801 16153 20181213_JW_Orientia_Karp_1_3 104.11 56.368 32930000 6096300 11990000 11943000 0 1474900 1426000 0 0 1591 208 1387 9873;9874;9875;9876;9877 6430;6431 6431 2 DWTDTNYYSEK Unmodified 1420.5783 0.5782897 243 A0A024RCI0;B4DRB0;B4DUZ1;B3KQJ7;Q59ED5;O43657 TSPAN6 Tetraspanin;Tetraspanin-6 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 49.246 49.572 2 0.00032267 18714 20181213_JW_Orientia_Karp_1_1 148.91 118.12 84889000 27217000 18182000 23054000 8649200 0 6984800 0 802140 1592 243 1388 9878;9879;9880;9881;9882;9883 6432;6433;6434 6432 2 DWYPHSR Unmodified 959.42496 0.42496436 1553 V9HW43;P04792;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 32.654 33.038 2 0.027146 8903 20181213_JW_Orientia_Karp_2_3 93.195 40.259 295890000 0 0 0 0 168020000 32822000 95044000 0 1593 1553 1389 9884;9885;9886 6435;6436;6437 6436 3 DYDDMLK Oxidation (M) 914.36915 0.36914855 1349 Karp_01525 yes yes 0 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 35.348 35.622 2 0.012834 10456 20181213_JW_Orientia_Karp_1_3 111.04 9.7083 117250000 46098000 33206000 30559000 7385800 0 0 0 0 1594 1349 1390 9887;9888;9889;9890 6438 6438 921 1 DYDDMLK Unmodified 898.37423 0.37423392 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 47.868 48.22 2 0.012366 17277 20181213_JW_Orientia_Karp_1_3 128.86 11.958 59949000 0 0 34129000 14335000 3703700 6732500 0 1048300 1595 1349 1390 9891;9892;9893;9894;9895 6439 6439 1 DYEDELAVIQHFTIVR Unmodified 1946.9738 0.97379183 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 72.947 73.017 3 0.002229 33643 20181213_JW_Orientia_Karp_1_1 127.05 91.96 118620000 38333000 15897000 12574000 0 12544000 0 39268000 0 1596 1170 1391 9896;9897;9898;9899;9900 6440;6441 6440 2 DYEEIGPSICR Unmodified 1337.5922 0.59216562 201 A0A024RAI1;P61158;B4DXW1;B4DT29;Q59FV6;B4DTI0;B4E1U3 ACTR3 Actin-related protein 3 yes no 0 0 0 0 By MS/MS 1 50.41 50.76 2 0.037261 19268 20181213_JW_Orientia_Karp_1_2 87.258 54.508 0 0 0 0 0 0 0 0 0 1597 201 1392 9901 6442 6442 1 DYELQLVTYK Unmodified 1270.6445 0.64451877 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 60.886 61.238 2 0.00049273 26123 20181213_JW_Orientia_Karp_1_2 134.68 62.446 18240000 0 7062900 9850600 0 0 0 0 1326500 1598 1803 1393 9902;9903;9904 6443;6444 6443 2 DYETATLSDIK Unmodified 1254.598 0.59796251 1509 O43707;O43707-2;Q96BG6;B4E337 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 50.531 50.926 2 4.7596E-18 19151 20181213_JW_Orientia_Karp_1_3 225.87 134.8 64586000 0 27835000 13690000 5557500 3272900 5667800 7653700 909720 1599 1509 1394 9905;9906;9907;9908;9909;9910;9911 6445;6446;6447;6448 6446 4 DYETATLSEIK Unmodified 1268.6136 0.61361257 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;Q86TX4;B3KUX9;B7Z2W3;H7C5W8 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 51.486 51.879 2 4.7596E-18 20323 20181213_JW_Orientia_Karp_1_1 225.87 144.68 215760000 61585000 69127000 65114000 13600000 0 0 4622900 1715400 1600 133 1395 9912;9913;9914;9915;9916;9917 6449 6449 1 DYEVELLR Unmodified 1035.5237 0.52367535 397 B4DNQ1;E9PKP7;A8K962;P17480-2;P17480;B4DLB0;O00164 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 57.89 58.172 2 0.014899 24176 20181213_JW_Orientia_Karp_1_2 95.909 38.628 30154000 11015000 5488100 10663000 0 0 2586100 0 401450 1601 397 1396 9918;9919;9920;9921;9922 6450;6451;6452 6451 3 DYEVQDGDVIHFR Unmodified 1591.7267 0.72668527 1101 Karp_00270 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 52.442 52.632 3 0.0054009 20563 20181213_JW_Orientia_Karp_1_2 113.07 72.492 161660000 64323000 25198000 30652000 0 17356000 24129000 0 0 1602 1101 1397 9923;9924;9925;9926;9927 6453;6454;6455;6456 6454 4 DYFEEYGK Unmodified 1049.4342 0.43419164 191 A0A024RA27;A0A024RA61;P22626-2;P22626;I6L957;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.839 47.159 2 0.0044934 15858 20181213_JW_Orientia_Karp_2_2 130.27 5.2883 197710000 50841000 42077000 32806000 25547000 18625000 23668000 189910 3954900 1603 191 1398 9928;9929;9930;9931;9932;9933;9934;9935 6457;6458;6459;6460;6461 6459 5 DYFEQYGK Unmodified 1048.4502 0.45017606 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q0VAC0;F8VZ49;A0A024RC46;A0A024QZ98;Q32P51;F8VTQ5;F8VYN5 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.34 45.528 2 0.010159 14899 20181213_JW_Orientia_Karp_2_2 103.56 59.116 102330000 55211000 33891000 0 0 5859400 7372100 0 0 1604 209 1399 9936;9937;9938;9939 6462;6463;6464 6464 3 DYGVLLEGSGLALR Unmodified 1461.7827 0.78274359 1646 Q53HC2;P30048-2;P30048 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 1 71.82 71.97 2 0.00039065 33014 20181213_JW_Orientia_Karp_1_2 183.99 140.68 8793800 0 8793800 0 0 0 0 0 0 1605 1646 1400 9940;9941 6465;6466 6465 2 DYLALNEDLSSWTAADTAAQITQR Unmodified 2652.2667 0.26673897 2063 S5LQY8 HLA-B yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 73.877 73.897 2;3 1.1029E-09 34185 20181213_JW_Orientia_Karp_1_1 149.74 0 159800000 53434000 47130000 47352000 266610 3483300 1873600 6256200 0 1606 2063 1401 9942;9943;9944;9945;9946;9947;9948;9949;9950;9951 6467;6468;6469;6470;6471 6467 5 DYLFPTK Unmodified 882.44872 0.4487195 1061 Karp_00005 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 53.073 53.342 2 0.026013 19554 20181213_JW_Orientia_Karp_2_3 94.662 11.991 88784000 13205000 18856000 32815000 11663000 0 12245000 0 0 1607 1061 1402 9952;9953;9954;9955;9956 6472;6473;6474 6474 3 DYLHLPPEIVPATLR Unmodified 1732.9512 0.9512059 1675 P46783;F6U211;S4R435 RPS10;RPS10-NUDT3 40S ribosomal protein S10 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.893 69.061 3 0.005137 27705 20181213_JW_Orientia_Karp_2_3 81.185 57.102 81139000 33568000 14940000 0 0 13782000 5065000 11850000 1933300 1608 1675 1403 9957;9958;9959;9960;9961;9962;9963 6475;6476;6477;6478;6479;6480 6478 6 DYLIDGSR Unmodified 937.45051 0.45051041 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;B4DTM7;P18206-3 VCL;HEL114 Vinculin yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 45.373 45.556 2 0.0089188 15848 20181213_JW_Orientia_Karp_1_3 107.29 52.683 44973000 20353000 17279000 7341200 0 0 0 0 0 1609 19 1404 9964;9965;9966 6481 6481 1 DYLLCDYNR Unmodified 1230.5339 0.53392246 467 B2R7T8;P47756-2;B1AK87;B1AK88;B4DWA6;P47756;B1AK85 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.888 53.138 2 0.036802 18660 20181213_JW_Orientia_Karp_3_1 76.17 40.874 15212000 6849400 0 3006800 0 1842500 2158800 1354500 0 1610 467 1405 9967;9968;9969;9970;9971 6482 6482 1 DYPDFSPSVDAEAIQK Unmodified 1780.8156 0.81555986 1590 P12429;D6RFG5;D6RCA8;D6RAZ8 ANXA3 Annexin A3;Annexin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 61.058 61.318 2 4.0677E-05 26120 20181213_JW_Orientia_Karp_1_2 151.7 100.25 83578000 22543000 15186000 26826000 0 8510100 6325100 0 4189300 1611 1590 1406 9972;9973;9974;9975;9976;9977 6483;6484 6483 2 DYQELMNTK Oxidation (M) 1156.507 0.50703901 995;996;814 CON__Q3TTY5;H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 33.649 33.957 2 1.6814E-09 9499 20181213_JW_Orientia_Karp_3_1 210.6 98.784 430000000 100300000 79194000 123850000 43075000 41774000 20055000 0 21752000 + 1612 814;995;996 1407 9978;9979;9980;9981;9982;9983;9984;9985;9986 6485;6486;6487;6488;6489;6490;6491;6492;6493;6494 6493 475 10 DYQELMNTK Unmodified 1140.5121 0.51212439 995;996;814 CON__Q3TTY5;H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 45.053 45.336 2 0.0044031 15014 20181213_JW_Orientia_Karp_2_1 105.98 43.512 299590000 143150000 0 56836000 32528000 57576000 770610 8724300 0 + 1613 814;995;996 1407 9987;9988;9989;9990;9991;9992;9993 6495;6496;6497;6498;6499 6496 5 DYQELMNVK Unmodified 1138.5329 0.53285983 804;1657;796 CON__P12035;P12035;CON__Q01546;H0YID6;CON__P35908;P35908 KRT3;KRT79;KRT2 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.819 51.177 2 0.00024511 19371 20181213_JW_Orientia_Karp_1_3 172.94 95.017 90766000 20943000 20363000 14599000 16964000 7905100 0 8639200 1353600 + 1614 796;804;1657 1408 9994;9995;9996;9997;9998;9999;10000 6500;6501;6502;6503;6504 6502 5 DYQELMNVK Oxidation (M) 1154.5278 0.52777445 804;1657;796 CON__P12035;P12035;CON__Q01546;H0YID6;CON__P35908;P35908 KRT3;KRT79;KRT2 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 epidermal no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 39.807 40.194 2 0.0013303 12805 20181213_JW_Orientia_Karp_1_3 123.21 66.487 77332000 0 0 26891000 16970000 0 4782000 28690000 0 + 1615 796;804;1657 1408 10001;10002;10003;10004;10005;10006 6505;6506;6507;6508;6509 6507 461 5 DYSLDEFEANK Unmodified 1329.5725 0.57247604 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 55.364 55.564 2 0.011353 22818 20181213_JW_Orientia_Karp_1_1 93.667 59.481 22671000 8786200 8211100 4389000 0 1284600 0 0 0 1616 1991 1409 10007;10008;10009;10010 6510;6511 6510 2 DYSPYFK Unmodified 918.41233 0.41233399 790;795 CON__P02533;P02533;CON__Q6IFX2;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;B4DWU0 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 0 0 0 0 By matching By matching By MS/MS 1 1 1 46.578 46.779 2 0.027923 16028 20181213_JW_Orientia_Karp_2_3 92.191 23.792 49208000 12460000 30144000 0 0 0 6604000 0 0 + 1617 790;795 1410 10011;10012;10013 6512 6512 1 DYTQMNELQR Oxidation (M) 1312.5718 0.57176453 1564 Q7L4Q3;P07203;P07203-2 GPX1 Glutathione peroxidase;Glutathione peroxidase 1 yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 35.039 35.442 2 0.0016046 10920 20181213_JW_Orientia_Karp_1_1 115.71 69.258 9941900 4785100 2765500 0 0 0 0 1905300 486130 1618 1564 1411 10014;10015;10016;10017 6513;6514 6513 1181 2 DYTSGAMLTGELK Oxidation (M) 1400.6493 0.64934615 138 A0A024R6K8;P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 49.735 49.935 2 3.282E-07 18482 20181213_JW_Orientia_Karp_1_3 181.4 116.56 117180000 44388000 29304000 35481000 0 0 8003600 0 0 1619 138 1412 10018;10019;10020;10021 6515;6516;6517 6517 124 3 DYTYEELLNR Unmodified 1314.6092 0.6091959 696 Q96I16;Q6IBR8;B5BU01;P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.094 59.387 2 1.485E-09 24624 20181213_JW_Orientia_Karp_1_3 209.58 163.19 89397000 28275000 19139000 18898000 8186600 6049600 8770000 79100 0 1620 696 1413 10022;10023;10024;10025;10026;10027;10028 6518;6519;6520;6521;6522 6520 5 DYVAQFEASALGK Unmodified 1397.6827 0.68269519 800 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 63.237 63.487 2 7.9148E-05 24604 20181213_JW_Orientia_Karp_2_2 165.7 127.13 77165000 15943000 17501000 27244000 0 7963500 8308400 205520 0 + 1621 800 1414 10029;10030;10031;10032;10033;10034;10035;10036 6523;6524;6525;6526;6527;6528 6527 6 DYVILDQK Unmodified 992.51786 0.51786169 1109 Karp_00291 yes yes 0 0 0 0 By MS/MS 1 49.989 49.989 2 0.027026 19191 20181213_JW_Orientia_Karp_1_1 98.629 29.714 0 0 0 0 0 0 0 0 0 1622 1109 1415 10037 6529 6529 1 EAAISLGLMTAEK Unmodified 1332.6959 0.69590241 1281 Karp_01117 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 58.743 59.01 2 0.0026234 24407 20181213_JW_Orientia_Karp_1_3 119.74 49.345 61638000 22125000 11042000 21581000 0 3245300 3255900 388700 0 1623 1281 1416 10038;10039;10040;10041;10042;10043 6530 6530 1 EAAIVSDIPGTTR Unmodified 1328.6936 0.69359423 1450 Karp_02530 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 49.831 50.021 2 0.00064852 19185 20181213_JW_Orientia_Karp_1_1 149.49 78.94 95642000 17477000 29375000 28208000 0 7819500 12762000 0 0 1624 1450 1417 10044;10045;10046;10047;10048 6531;6532;6533 6531 3 EAALNTLSK Unmodified 945.51311 0.51311067 1113 Karp_00296 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 33.665 33.992 2 0.0050011 10339 20181213_JW_Orientia_Karp_1_1 104.2 38.127 315170000 84112000 68539000 138650000 12106000 7843000 0 0 3927900 1625 1113 1418 10049;10050;10051;10052;10053;10054 6534;6535;6536 6534 3 EAALSTALSEK Unmodified 1118.5819 0.58191851 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 40.776 41.078 2 6.886E-06 13298 20181213_JW_Orientia_Karp_1_3 176.6 109.1 143480000 66608000 0 41547000 0 9707400 0 22061000 3558300 1626 1543;1544;1851 1419 10055;10056;10057;10058;10059;10060;10061 6537;6538;6539;6540;6541;6542 6538 6 EAALTSEEVGADLEQVEVLQK Unmodified 2257.1325 0.1325369 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS 1 1 66.243 66.292 2 1.7178E-09 28972 20181213_JW_Orientia_Karp_1_3 164.66 112.93 7293700 4189800 0 3103800 0 0 0 0 0 1627 316 1420 10062;10063 6543 6543 1 EAAVTIDAVSPNK Unmodified 1313.6827 0.68269519 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 44.466 44.782 2 4.6442E-05 15557 20181213_JW_Orientia_Karp_1_2 171.67 105.95 187820000 50312000 69049000 27372000 4984000 0 11466000 24640000 0 1628 1428 1421 10064;10065;10066;10067;10068;10069 6544;6545;6546;6547;6548 6545 5 EACFAVEGPK Unmodified 1106.5066 0.50664508 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.363 40.665 2 0.00025032 12676 20181213_JW_Orientia_Karp_3_1 143.37 86.94 612280000 71735000 53224000 38990000 0 24108000 20567000 347740000 55918000 + 1629 792 1422 10070;10071;10072;10073;10074;10075;10076;10077 6549;6550;6551;6552;6553;6554;6555;6556;6557 6555 9 EADDIVNWLK Unmodified 1201.5979 0.59790293 171 B4DNL5;A0A024R8S5;P07237;B4DJS0;I3L312;I3L3P5 P4HB Protein disulfide-isomerase yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.95 66.12 2 6.519E-05 23102 20181213_JW_Orientia_Karp_3_1 152.34 92.238 68461000 24035000 12124000 19782000 0 0 6517700 6001600 0 1630 171 1423 10078;10079;10080;10081;10082;10083;10084 6558;6559;6560;6561;6562;6563 6562 6 EADESLNFEEQILEAAK Unmodified 1934.9109 0.91091681 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 71.049 71.165 2 4.2196E-164 32075 20181213_JW_Orientia_Karp_1_3 352.08 250.7 94584000 30329000 20169000 20378000 4119800 6185100 0 13403000 0 1631 2016 1424 10085;10086;10087;10088;10089;10090 6564;6565;6566;6567;6568 6566 5 EADGSETPEPFAAEAK Unmodified 1647.7264 0.7264105 451 B2R5U1;B4E299;B3KU67;Q59FF0;Q7KZF4;I6TRR8 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.616 45.799 2 3.1431E-06 16479 20181213_JW_Orientia_Karp_1_1 165.58 126.95 20530000 6125700 7734700 6669900 0 0 0 0 0 1632 451 1425 10091;10092;10093 6569;6570;6571 6569 3 EADSNAFNNTNWR Unmodified 1537.6546 0.65458296 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 43.665 44.009 2 5.6855E-59 14941 20181213_JW_Orientia_Karp_1_3 284.1 172.64 198480000 65656000 42871000 61768000 6907500 0 5991600 11210000 4073700 1633 1178 1426 10094;10095;10096;10097;10098;10099;10100;10101 6572;6573;6574;6575;6576;6577;6578;6579 6574 8 EADSNAFNNTNWR Deamidation (NQ) 1538.6386 0.63859855 1178 Karp_00644 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 45.884 46.185 2 9.6793E-17 16138 20181213_JW_Orientia_Karp_1_3 212.09 131.4 59765000 14757000 17558000 19396000 5287500 0 0 0 2766600 1634 1178 1426 10102;10103;10104;10105;10106 6580;6581;6582;6583;6584 6582 583;584 5 EAEAAIYHLQLFEELR Unmodified 1930.9789 0.97887721 1597 V9HWB8;P14618;P14618-3;B4DNK4;Q8WUW7;Q9UKK4;Q9UN47;Q9NYI7 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 66.363 66.57 3 0.0021367 29721 20181213_JW_Orientia_Karp_1_1 101.75 58.795 255130000 50971000 5211800 28654000 8596200 35949000 42897000 4429800 78425000 1635 1597 1427 10107;10108;10109;10110;10111;10112;10113;10114 6585;6586;6587;6588;6589;6590 6585 6 EAEAAIYHLQLFEELRR Unmodified 2087.08 0.079988241 1597 V9HWB8;P14618;P14618-3;B4DNK4;Q8WUW7;Q9UKK4;Q9UN47;Q9NYI7 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.315 59.602 3 0.00040417 25125 20181213_JW_Orientia_Karp_1_2 119.87 76.569 125970000 40402000 27605000 20802000 10749000 11788000 9352300 0 5275900 1636 1597 1428 10115;10116;10117;10118;10119;10120;10121 6591;6592;6593;6594;6595 6592 5 EAEEEFWYR Unmodified 1257.5302 0.53021729 727 E9PH64;B7Z7N1;E7EWZ0;E9PF49;Q9Y6M9 NDUFB9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 52.092 52.393 2 0.03709 20378 20181213_JW_Orientia_Karp_1_2 73.665 26.09 38184000 10394000 8430900 12131000 3374800 1510400 2100500 0 242120 1637 727 1429 10122;10123;10124;10125;10126;10127;10128 6596 6596 1 EAEEETTNDNGVLVLEPAR Deamidation (NQ) 2085.9702 0.9702226 79 B2R642;A0A024R3I5;P43121;B3KXZ9;P43121-2 MCAM Cell surface glycoprotein MUC18 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 57.833 58.12 2 1.4731E-06 23852 20181213_JW_Orientia_Karp_1_3 151.07 102.12 27088000 0 0 13164000 5662300 5646900 2614800 0 0 1638 79 1430 10129;10130;10131;10132;10133 6597;6598;6599;6600 6598 34;35 4 EAEEETTNDNGVLVLEPAR 2 Deamidation (NQ) 2086.9542 0.95423818 79 B2R642;A0A024R3I5;P43121;B3KXZ9;P43121-2 MCAM Cell surface glycoprotein MUC18 yes no 0 2 0 0 By MS/MS By matching 1 1 60.929 61.359 2 0.0035071 26047 20181213_JW_Orientia_Karp_1_2 105.19 56.21 4870200 0 3880600 0 0 0 0 0 989630 1639 79 1430 10134;10135 6601;6602 6601 34;35 2 EAEFDLSMIVGQVK Oxidation (M) 1580.7756 0.7756093 1371 Karp_02001 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 2 2 3 69.839 69.979 2 4.6613E-73 31288 20181213_JW_Orientia_Karp_1_2 294.15 208.86 3999600000 590500000 550630000 548480000 272330000 461270000 442560000 806400000 327460000 1640 1371 1431 10136;10137;10138;10139;10140;10141;10142;10143;10144;10145;10146;10147;10148;10149;10150;10151;10152;10153;10154;10155;10156 6603;6604;6605;6606;6607;6608;6609;6610;6611;6612;6613;6614;6615;6616;6617;6618;6619;6620 6608 952 17 EAEFDLSMIVGQVK Unmodified 1564.7807 0.78069468 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 72.972 73.042 2 1.6517E-88 29477 20181213_JW_Orientia_Karp_2_2 313.3 171.31 4311500000 866320000 826760000 1043600000 64596000 221220000 264930000 799570000 224450000 1641 1371 1431 10157;10158;10159;10160;10161;10162;10163;10164;10165 6621;6622;6623;6624;6625;6626;6627;6628;6629 6626 9 EAEGEQFVEEALEK Unmodified 1606.7362 0.7362469 1495 Q5T765;O14879;B4DLS7 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 yes no 0 0 0 0 By MS/MS 1 58.302 58.812 2 0.0023965 21079 20181213_JW_Orientia_Karp_3_2 130.15 85.389 0 0 0 0 0 0 0 0 0 1642 1495 1432 10166 6630 6630 1 EAEILQLIDR Unmodified 1198.6558 0.65575216 1418 Karp_02255 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 65.456 65.691 2 1.239E-08 29205 20181213_JW_Orientia_Karp_1_1 204.52 114.83 37871000 0 9240600 10540000 196950 10180000 6353800 0 1359400 1643 1418 1433 10167;10168;10169;10170;10171;10172;10173 6631;6632;6633;6634;6635 6631 5 EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK Unmodified 3310.5268 0.52681154 1823 Q3ZCM7;A0A075B736;Q5SQY0 TUBB8 Tubulin beta-8 chain yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 66.866 67.059 3 3.1794E-06 29929 20181213_JW_Orientia_Karp_1_1 92.552 0 176220000 45400000 38520000 41230000 4649200 0 11412000 0 35007000 1644 1823 1434 10174;10175;10176;10177;10178;10179 6636;6637;6638;6639 6636 4 EAESSPFVER Unmodified 1149.5302 0.5302173 1598 Q5CAQ5;V9HWP2;P14625;B4DU71;B4DHT9 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 37.639 37.972 2 0.0027798 11823 20181213_JW_Orientia_Karp_1_2 111.46 28.705 145130000 30782000 49673000 49325000 3364100 0 403350 11586000 0 1645 1598 1435 10180;10181;10182;10183;10184;10185 6640;6641;6642 6641 3 EAEYFELPELVR Unmodified 1493.7402 0.74021007 548 B3KY04;Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.958 71.058 2 7.5189E-08 31962 20181213_JW_Orientia_Karp_1_3 192.12 103.94 261780000 53070000 100380000 41160000 0 13608000 6494300 47069000 0 1646 548 1436 10186;10187;10188;10189;10190;10191;10192 6643;6644;6645;6646;6647;6648;6649 6645 7 EAFNMIDQNR Oxidation (M) 1252.5506 0.55063516 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;P24844-2;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 36.122 36.454 2 1.8658E-39 10455 20181213_JW_Orientia_Karp_2_3 276.75 156.44 1158700000 378390000 272960000 266690000 29254000 48346000 26057000 135790000 1220500 1647 1498;1626;1831 1437 10193;10194;10195;10196;10197;10198;10199;10200;10201;10202;10203;10204;10205;10206;10207 6650;6651;6652;6653;6654;6655;6656;6657;6658;6659 6657 1103 10 EAFNMIDQNR Oxidation (M);Deamidation (NQ) 1253.5347 0.53465075 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;P24844-2;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 3 2 2 1 3 1 38.598 38.931 2 5.233E-09 13011 20181213_JW_Orientia_Karp_1_2 208.11 148.09 97044000 30307000 26068000 19810000 3419000 2628400 1741700 12577000 493230 1648 1498;1626;1831 1437 10208;10209;10210;10211;10212;10213;10214;10215;10216;10217;10218;10219;10220;10221;10222;10223;10224 6660;6661;6662;6663;6664;6665;6666;6667;6668;6669;6670;6671 6664 1006;1007 1103 12 EAFNMIDQNR Unmodified 1236.5557 0.55572054 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;P24844-2;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.692 46.012 2 3.7937E-72 16164 20181213_JW_Orientia_Karp_1_2 312.24 234.92 531960000 136090000 171830000 138770000 15785000 22010000 15940000 2957400 28579000 1649 1498;1626;1831 1437 10225;10226;10227;10228;10229;10230;10231;10232 6672;6673;6674;6675;6676;6677;6678;6679;6680 6673 9 EAFNMIDQNR Deamidation (NQ) 1237.5397 0.53973612 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;P24844-2;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 1 0 0 By MS/MS 1 49.517 49.867 2 0.0026798 18698 20181213_JW_Orientia_Karp_1_2 118.03 80.689 8745700 0 8745700 0 0 0 0 0 0 1650 1498;1626;1831 1437 10233 6681 6681 1006;1007 1 EAFQLFDR Unmodified 1024.4978 0.49779495 724 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660-2;P60660;G3V1Y7 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.39 56.706 2 0.00014933 21357 20181213_JW_Orientia_Karp_2_3 195.06 88.648 884710000 227930000 79012000 116060000 91374000 70994000 298990000 0 348940 1651 724 1438 10234;10235;10236;10237;10238;10239;10240 6682;6683;6684;6685;6686;6687 6687 6 EAFSLFDK Unmodified 955.4651 0.46509784 497 Q9BRL5;B4DJ51;B2RDW0;H0Y7A7;P62158;E7ETZ0;E7EMB3;A8K1M2;F8WBR5;M0QZ52;G3V479;P27482 CALM3;CALM2;CALM1;CALML3 Calmodulin;Calmodulin-like protein 3 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.639 56.954 2 0.020972 21438 20181213_JW_Orientia_Karp_2_3 87.696 5.3914 180890000 30910000 11204000 13203000 16401000 21375000 87006000 0 787740 1652 497 1439 10241;10242;10243;10244;10245;10246;10247 6688;6689 6689 2 EAFTNKPNVFTVVTR Unmodified 1721.9101 0.91006937 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.143 50.393 3 0.0028061 18986 20181213_JW_Orientia_Karp_1_2 118.52 85.252 236520000 64227000 73185000 60478000 24005000 14621000 0 0 0 1653 1520 1440 10248;10249;10250;10251;10252 6690;6691;6692 6691 3 EAGAGGLAIAVEGPSK Unmodified 1425.7464 0.74635808 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91;H0Y5C6 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.438 50.783 2 4.541E-09 17185 20181213_JW_Orientia_Karp_3_1 186.51 150.19 162660000 65394000 39446000 25198000 8822800 3759700 7305300 9451900 3285200 1654 1615 1441 10253;10254;10255;10256;10257;10258;10259;10260 6693;6694;6695;6696;6697 6696 5 EAGAGGLSIAVEGPSK Unmodified 1441.7413 0.7412727 1520;1797 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;Q14315-2;Q14315;Q59H94 FLNB;DKFZp686A1668;FLNC Filamin-B;Filamin-C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 49.23 49.576 2 1.165E-19 18410 20181213_JW_Orientia_Karp_1_2 215.51 145.1 189980000 39516000 54818000 58714000 10158000 5906400 12880000 76384 7911600 1655 1520;1797 1442 10261;10262;10263;10264;10265;10266;10267;10268 6698;6699;6700;6701;6702;6703;6704 6699 7 EAGEGGEAEAPAAEGGK Unmodified 1528.6641 0.66414459 1642 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 26.388 26.747 2 1.0318E-42 6533 20181213_JW_Orientia_Karp_1_3 255.24 210.22 306410000 44695000 0 31966000 39785000 81839000 42730000 36281000 29117000 1656 1642 1443 10269;10270;10271;10272;10273;10274;10275;10276 6705;6706;6707;6708;6709;6710;6711;6712 6707 8 EAGELKPEEEITVGPVQK Unmodified 1952.0102 0.01023692 1703 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 46.556 46.8 3 7.1625E-09 16719 20181213_JW_Orientia_Karp_1_2 169.98 115.12 65701000 21083000 22551000 9098900 0 3009400 2684400 0 7275400 1657 1703 1444 10277;10278;10279;10280;10281;10282 6713;6714;6715 6714 3 EAGFLRPVTIFGPIADVAR Unmodified 2028.1156 0.11564547 423 Q68DX9;G5E9E7;A9CQZ8;G3V1L9;Q07157-2;Q07157;Q6MZU1 DKFZp686M05161;TJP1;DKFZp686A1195 Tight junction protein ZO-1 yes no 0 0 0 1 By MS/MS By matching 1 1 71.683 71.833 3 0.0013503 32848 20181213_JW_Orientia_Karp_1_2 109.67 68.301 12087000 0 3701800 0 0 0 0 8385200 0 1658 423 1445 10283;10284 6716 6716 1 EAGGGGVGGPGAK Unmodified 1012.4938 0.49377221 832 Q63HR1;Q5VU21;D3DQ69;Q8NC51-4;Q8NC51-3;D3DQ70;Q8NC51-2;Q8NC51 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 19.512 19.702 2 0.00059968 3920 20181213_JW_Orientia_Karp_1_1 150.81 81.612 4501400 1206900 731430 923930 1130200 0 509040 0 0 1659 832 1446 10285;10286;10287;10288;10289 6717 6717 1 EAHQLFLEPEVLDPESVELK Unmodified 2321.1791 0.17909316 655 I3L3E9;B4DWZ4;Q6FHX6;P39748-2;P39748 FEN1 Flap endonuclease 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 68.636 68.819 3 0.0027131 30479 20181213_JW_Orientia_Karp_1_3 91.414 56.11 24469000 3390700 4459400 6155800 1080300 0 2573300 6809000 0 1660 655 1447 10290;10291;10292;10293;10294;10295 6718;6719;6720 6719 3 EAIENYDLAIK Unmodified 1277.6503 0.65033243 1340;1186 Karp_02088;Karp_00690;Karp_01512 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.023 52.273 2 0.00010258 20308 20181213_JW_Orientia_Karp_1_2 160.75 74.084 243340000 45984000 50797000 63084000 41295000 15220000 26960000 0 0 1661 1186;1340 1448 10296;10297;10298;10299;10300;10301;10302 6721;6722;6723;6724;6725;6726;6727 6722 7 EAIESFDLAIK Unmodified 1234.6445 0.64451877 1186 Karp_02088;Karp_00690 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.816 61.066 2 2.4464E-07 26347 20181213_JW_Orientia_Karp_1_1 189.18 66.436 71151000 24333000 10464000 13590000 2170300 9610600 10983000 0 0 1662 1186 1449 10303;10304;10305;10306;10307;10308 6728;6729;6730;6731;6732;6733 6728 6 EAIHSQLLEK Unmodified 1166.6295 0.62953741 868 E5RGS4;O60925 PFDN1 Prefoldin subunit 1 yes no 0 0 0 0 By MS/MS 1 33.019 33.019 3 0.0075621 9785 20181213_JW_Orientia_Karp_1_1 97.472 21.244 0 0 0 0 0 0 0 0 0 1663 868 1450 10309 6734 6734 1 EAIIFYDLAIK Unmodified 1294.7173 0.71728978 1448;1085 Karp_02495;Karp_00200 no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 71.643 71.721 2 0.0102 32818 20181213_JW_Orientia_Karp_1_1 106.18 63.314 79559000 25882000 9343900 6827100 3617000 8409200 5473600 20005000 0 1664 1448;1085 1451 10310;10311;10312;10313;10314;10315;10316 6735;6736;6737;6738;6739;6740 6735 3 EAILAIHK Unmodified 893.53345 0.53345218 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 34.59 34.865 2 0.0036435 10206 20181213_JW_Orientia_Karp_1_3 152.63 79.595 121470000 46268000 0 60330000 0 4908000 0 9963800 0 1665 1509 1452 10317;10318;10319;10320 6741;6742 6742 2 EAILDIITSR Unmodified 1129.6343 0.63428844 1570 P08133-2;P08133;Q6ZP35;E7EMC6;E5RK69;A8K3Q7;E5RFF0;E5RIU8;E5RJR0;E5RJF5;E5RI05;E5RK63 ANXA6 Annexin A6;Annexin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 65.76 65.93 2 1.5069E-08 28637 20181213_JW_Orientia_Karp_1_3 200.56 98.841 27057000 15071000 3378700 5048500 220230 0 3339200 0 0 1666 1570 1453 10321;10322;10323;10324;10325 6743;6744;6745;6746 6745 4 EAINVEQAFQTIAR Unmodified 1588.8209 0.82092001 1696 P51149;C9J4S4;C9J4V0;C9J8S3 RAB7A Ras-related protein Rab-7a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.048 65.255 2 8.909E-46 28933 20181213_JW_Orientia_Karp_1_1 259.75 190.48 90060000 15449000 23542000 34677000 1000000 8548700 2895400 3947200 0 1667 1696 1454 10326;10327;10328;10329;10330;10331;10332 6747;6748;6749;6750;6751;6752 6747 6 EAIQGGIVR Unmodified 941.52943 0.52942943 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;A0A075B727;A0A075B728 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 35.95 36.24 2 0.00027976 10962 20181213_JW_Orientia_Karp_1_2 163.9 62.296 108570000 37271000 26295000 27080000 0 4196100 0 13726000 0 1668 274 1455 10333;10334;10335;10336;10337;10338;10339 6753;6754;6755;6756;6757;6758 6754 6 EAIVTSEELGQDLEHVEVLQK Unmodified 2365.2013 0.20128517 316 A6NG51;Q13813-3;Q13813;Q13813-2;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 62.949 63.139 3 0.038467 24699 20181213_JW_Orientia_Karp_2_3 39.923 19.667 72495000 18395000 0 23656000 3185000 20055000 7204000 0 0 1669 316 1456 10340;10341;10342;10343;10344 6759 6759 1 EALALLLTYSGTEK Unmodified 1507.8134 0.81337501 1982 Q9NQW1-5;Q9NQW1 SEC31B Protein transport protein Sec31B yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 48.478 48.738 3 0.0059645 17958 20181213_JW_Orientia_Karp_1_2 86.772 23.11 34184000 12264000 8341600 6153500 0 3680400 2950800 0 793820 1670 1982 1457 10345;10346;10347;10348;10349;10350 6760 6760 1 EALAQTVLAEVPTQLVSYFR Unmodified 2234.1947 0.19468365 431 Q59EI4;F2Z2V0;B0QZ18;Q99829;A6PVH9 CPNE1 Copine-1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 76.248 76.247 2 0.031129 35909 20181213_JW_Orientia_Karp_1_2 67.846 40.437 14068000 0 5381000 3884700 0 0 0 4802200 0 1671 431 1458 10351;10352;10353 6761 6761 1 EALGAEGLAK Unmodified 957.51311 0.51311067 1067 Karp_00016 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.203 37.536 2 0.00081072 12081 20181213_JW_Orientia_Karp_1_1 128.12 40.367 184180000 77297000 52644000 33767000 4138400 4613800 0 11721000 0 1672 1067 1459 10354;10355;10356;10357;10358;10359 6762;6763;6764;6765;6766;6767;6768;6769 6762 8 EALLGVQEDVDEYVK Unmodified 1705.841 0.84104633 982 H0YL43;Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 62.664 62.964 2 0.0021568 24340 20181213_JW_Orientia_Karp_2_2 134.49 85.139 7447400 0 0 0 1270200 6177200 0 0 0 1673 982 1460 10360;10361 6770;6771 6771 2 EALLQASR Unmodified 886.48723 0.48723027 1630 V9HWC0;P26038 HEL70;MSN Moesin yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1 2 1 34.065 34.441 2 0.0044303 9358 20181213_JW_Orientia_Karp_2_1 131.22 32.699 92561000 31967000 25038000 10442000 5272700 9816100 1565100 5285200 3174600 1674 1630 1461 10362;10363;10364;10365;10366;10367;10368;10369;10370;10371 6772;6773;6774;6775;6776 6774 5 EALNKAEFVNFIHK Unmodified 1658.878 0.87804096 1442 Karp_02417 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 46.826 47.099 3 1.9122E-05 15895 20181213_JW_Orientia_Karp_2_1 173.19 113.96 138590000 29975000 6321500 30549000 22354000 8314200 22658000 0 18415000 1675 1442 1462 10372;10373;10374;10375;10376;10377;10378;10379 6777;6778;6779;6780;6781;6782 6779 6 EALTYDGALLGDR Unmodified 1392.6885 0.68850885 603 Q75MU1;B4DMV6;Q75MU2;Q15056-2;Q15056;A4D198 WBSCR1;EIF4H;LOC392647 Eukaryotic translation initiation factor 4H yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.348 56.716 2 2.6429E-07 21103 20181213_JW_Orientia_Karp_2_2 185.99 117.37 153800000 0 35046000 34881000 23840000 32996000 24981000 0 2061400 1676 603 1463 10380;10381;10382;10383;10384;10385 6783;6784;6785;6786;6787 6786 5 EANIQAVDSEVGLTK Unmodified 1572.7995 0.79951586 669 B4DZC9;Q9H2G2-2;Q9H2G2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 0 By MS/MS 1 50.305 50.504 2 0.004185 18856 20181213_JW_Orientia_Karp_1_3 137.95 50.763 0 0 0 0 0 0 0 0 0 1677 669 1464 10386 6788 6788 1 EANMPLPGYK Unmodified 1118.543 0.54303059 623 B4DPW9;Q53GY0;P13797-2;P13797;U3KQI3;B4DPU6 PLS3 Plastin-3 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 46.105 46.367 2 0.032973 16227 20181213_JW_Orientia_Karp_1_3 76.221 22.87 51021000 15904000 15296000 15675000 0 0 2233400 0 1912000 1678 623 1465 10387;10388;10389;10390;10391 6789 6789 1 EANQQQQFNR Unmodified 1261.58 0.57996145 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching 1 1 22.014 22.289 2 0.0001412 4573 20181213_JW_Orientia_Karp_1_3 147.29 71.435 637300 0 0 499260 0 138040 0 0 0 1679 316 1466 10392;10393 6790 6790 1 EANTSSGNYMVYSYR Oxidation (M) 1756.7363 0.73626368 1105 Karp_00283 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 40.629 40.859 2 2.0213E-05 13807 20181213_JW_Orientia_Karp_1_1 161.87 115.87 20401000 6376100 6352100 3501000 3278500 893200 0 0 0 1680 1105 1467 10394;10395;10396;10397;10398 6791;6792;6793 6791 622 3 EANTSSGNYMVYSYR Unmodified 1740.7413 0.74134906 1105 Karp_00283 yes yes 0 0 0 0 By MS/MS 1 46.209 46.407 2 0.036738 16271 20181213_JW_Orientia_Karp_1_3 90.793 50.639 0 0 0 0 0 0 0 0 0 1681 1105 1467 10399 6794 6794 1 EAPAAIIELEHYGVPFSR Unmodified 1998.0211 0.021076378 1427 Karp_02373 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 67.272 67.486 2 0.00042586 29836 20181213_JW_Orientia_Karp_1_2 123.95 80.266 18172000 5051400 5919700 3207500 0 0 0 0 3993200 1682 1427 1468 10400;10401;10402;10403 6795 6795 1 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK Unmodified 2914.2952 0.29519815 1642 P29966;Q6NVI1 MARCKS Myristoylated alanine-rich C-kinase substrate yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 44.439 44.759 3 2.3189E-06 14741 20181213_JW_Orientia_Karp_3_1 95.746 71.834 178370000 29655000 36964000 34227000 15603000 14858000 21005000 22531000 3527900 1683 1642 1469 10404;10405;10406;10407;10408;10409;10410;10411 6796;6797;6798;6799;6800;6801;6802;6803;6804;6805 6803 10 EAPDSDPVMSMQKTQKPQTTVGQ 2 Oxidation (M) 2534.1629 0.16286753 1885 Q71F78 LCA10 Putative lung carcinoma-associated protein 10 yes yes 0 0 2 2 By matching By MS/MS 1 1 78.197 78.147 2 0.016958 32080 20181213_JW_Orientia_Karp_2_3 71.98 25.276 150890000 0 146790000 0 0 0 4102900 0 0 1684 1885 1470 10412;10413 6806 6806 1486;1487 0 EAPPPLSPPQPASPAEEDK Unmodified 1955.9476 0.94763666 588 K7ELL7;B4DJQ5 PRKCSH yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 49.54 49.913 2 0.02315 17369 20181213_JW_Orientia_Karp_2_2 70.272 42.591 9753900 0 0 3804800 0 2171200 1938200 538370 1301300 1685 588 1471 10414;10415;10416;10417;10418 6807;6808 6808 2 EAQQALGSAAADATEAK Unmodified 1630.7798 0.77984305 176 A0A024R972;P11047 LAMC1 Laminin subunit gamma-1 yes no 0 0 0 0 By MS/MS 1 38.526 38.526 2 1.79E-06 12640 20181213_JW_Orientia_Karp_1_1 157.35 107.15 5273200 5273200 0 0 0 0 0 0 0 1686 176 1472 10419 6809 6809 1 EAQTLDSQIQETSI Unmodified 1561.7471 0.74714594 879 E7EVA0;P27816;P27816-2;A0A024R2V0;Q86Y04;P27816-4;Q8NDS5 MAP4;DKFZp547H1810 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 58.998 59.299 2 0.00079967 22553 20181213_JW_Orientia_Karp_2_2 139.89 107.85 12664000 0 8939100 0 0 3725200 0 0 0 1687 879 1473 10420;10421;10422 6810;6811 6811 2 EAQTSFLHLGYLPNQLFR Unmodified 2133.1007 0.10072368 292 F1T0B3;A3RJH1;Q92499-3;Q92499 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 69.644 69.815 3 0.0099695 31661 20181213_JW_Orientia_Karp_1_2 74.966 28.845 14818000 0 1176200 3979100 1092700 5216400 0 0 3353500 1688 292 1474 10423;10424;10425;10426;10427 6812 6812 1 EAQYRPILQGITK Unmodified 1515.8409 0.84092717 1169 Karp_00623 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 44.475 44.777 2 1.2333E-15 15404 20181213_JW_Orientia_Karp_1_3 220.29 138.52 59856000 12817000 20373000 12204000 0 3670500 4290000 4863900 1638200 1689 1169 1475 10428;10429;10430;10431;10432;10433;10434 6813;6814;6815 6814 2 EASFDQSNLTAANAEK Unmodified 1694.7748 0.77475768 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 42.099 42.337 2 3.8457E-60 14681 20181213_JW_Orientia_Karp_1_1 290.1 197.86 20842000 0 10286000 4837400 0 1972600 3746300 0 0 1690 1162 1476 10435;10436;10437;10438;10439;10440 6816;6817;6818 6816 3 EASMVITESPAALQLR Oxidation (M) 1730.8873 0.88728501 160 B4E2V5;B4DZK8;A0A024R882;P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 2 2 1 1 56.163 56.506 2;3 6.8052E-07 23430 20181213_JW_Orientia_Karp_1_1 176.32 114.76 158940000 26643000 39095000 41703000 23008000 12992000 11772000 3563100 160860 1691 160 1477 10441;10442;10443;10444;10445;10446;10447;10448;10449;10450;10451;10452;10453 6819;6820;6821;6822;6823;6824;6825;6826 6819 131 8 EASMVITESPAALQLR Unmodified 1714.8924 0.89237039 160 B4E2V5;B4DZK8;A0A024R882;P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 61.698 61.971 2 5.5695E-09 26918 20181213_JW_Orientia_Karp_1_1 234.3 148.19 125150000 39465000 33346000 27080000 2076400 11822000 7711200 0 3645200 1692 160 1477 10454;10455;10456;10457;10458;10459;10460 6827;6828;6829;6830;6831;6832 6827 6 EASYSLIR Unmodified 937.4869 0.48689592 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;B0QZK4;Q5SWC8;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 41.896 42.166 2 0.0059101 13917 20181213_JW_Orientia_Karp_1_3 116.9 19.431 93988000 32299000 30259000 20520000 0 766870 0 10142000 0 1693 1846 1478 10461;10462;10463;10464;10465 6833;6834 6834 2 EATASDVAAYINQDIK Deamidation (NQ) 1708.8156 0.81555986 1375 Karp_02111 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 1 2 58.435 58.743 2 7.467E-78 22497 20181213_JW_Orientia_Karp_1_2 295.78 197.02 656580000 161760000 141610000 164560000 42081000 80079000 50399000 6017600 10081000 1694 1375 1479 10466;10467;10468;10469;10470;10471;10472;10473;10474;10475;10476;10477;10478;10479;10480;10481 6835;6836;6837;6838;6839;6840;6841;6842;6843;6844;6845;6846;6847;6848;6849;6850;6851 6837 856;1857 17 EATASDVAAYINQDIK Unmodified 1707.8315 0.83154427 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 2 2 3 1 58.885 59.225 2;3 2.2553E-156 22407 20181213_JW_Orientia_Karp_2_1 350.43 247.12 4111500000 341320000 629470000 1665600000 363300000 504560000 517280000 89946000 0 1695 1375 1479 10482;10483;10484;10485;10486;10487;10488;10489;10490;10491;10492;10493;10494;10495;10496;10497;10498;10499 6852;6853;6854;6855;6856;6857;6858;6859;6860;6861;6862 6858 11 EATSTFTNITYR Unmodified 1402.6729 0.67285879 1463 L7UUZ7;P05106 ITGB3 Integrin beta;Integrin beta-3 yes no 0 0 0 0 By MS/MS By matching 1 1 47.357 47.532 2 0.0049033 17435 20181213_JW_Orientia_Karp_1_1 116.55 68.123 36338000 15371000 20967000 0 0 0 0 0 0 1696 1463 1480 10500;10501 6863 6863 1 EATTEFSVDAR Unmodified 1224.5622 0.5622457 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 41.354 41.654 2 1.2989E-05 13643 20181213_JW_Orientia_Karp_1_3 173.24 126.24 106930000 40425000 37586000 19697000 0 0 0 9217100 0 1697 1615 1481 10502;10503;10504;10505 6864;6865;6866;6867 6866 4 EATWVVDVK Unmodified 1045.5444 0.5444108 464 B2R761;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307;B4E0J3;H0YF61 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.026 51.276 2 0.0011635 19607 20181213_JW_Orientia_Karp_1_2 129.42 57.544 77692000 13335000 19333000 7561200 21729000 6195100 9539300 0 0 1698 464 1482 10506;10507;10508;10509;10510;10511;10512 6868;6869;6870;6871;6872;6873 6868 6 EAVAGDIVALTGLK Unmodified 1355.766 0.76603089 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 65.923 66.143 2 3.3093E-25 25488 20181213_JW_Orientia_Karp_3_2 231.92 154.97 1016300000 275200000 131290000 240640000 20744000 156470000 50663000 73311000 67943000 1699 1094 1483 10513;10514;10515;10516;10517;10518;10519;10520;10521 6874;6875;6876;6877;6878;6879;6880;6881;6882;6883 6883 10 EAVGDLLDAFK Unmodified 1176.6027 0.60265396 877 E7EUU4;Q04637-3;E7EX73;B4DSI9;E9PGM1;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637;Q04637-8;Q04637-9;C9J6B6;C9J2Z7;C9K073;C9JF13 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 69.944 70.131 2 0.0066391 25208 20181213_JW_Orientia_Karp_3_1 101.65 50.943 10718000 3548700 0 0 0 0 0 5935800 1233100 1700 877 1484 10522;10523;10524 6884;6885 6885 2 EAVTFLTK Unmodified 907.50148 0.50148335 1417 Karp_02254 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 46.006 46.196 2 0.013215 16367 20181213_JW_Orientia_Karp_1_2 98.629 26.491 42622000 10039000 19130000 11912000 0 552700 988210 0 0 1701 1417 1485 10525;10526;10527;10528;10529 6886 6886 1 EAVVSLPR Unmodified 869.49707 0.49706667 571 B4DGK4 SYT7 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 2 2 2 2 60.349 60.631 1;2 0.0048263 23198 20181213_JW_Orientia_Karp_2_2 125.25 50.837 103050000 31910000 7609200 13963000 10508000 13392000 21782000 0 3886700 1702 571 1486 10530;10531;10532;10533;10534;10535;10536;10537;10538;10539;10540;10541;10542 6887;6888;6889;6890;6891 6889 4 EAYLVGLFEDTNLCAIHAK Unmodified 2163.067 0.067040293 1853 Q5TEC6 HIST2H3PS2 Histone H3 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 68.712 68.9 2;3 0.0024783 26958 20181213_JW_Orientia_Karp_3_2 94.922 52.214 640420000 179290000 105430000 93241000 18274000 37560000 18259000 144470000 43897000 1703 1853 1487 10543;10544;10545;10546;10547;10548;10549;10550;10551;10552;10553;10554;10555;10556;10557;10558 6892;6893;6894;6895;6896;6897;6898;6899;6900;6901 6901 10 EAYMGNVLQGGEGQAPTR Oxidation (M) 1892.8687 0.86867484 913 H0YEL7;E9PRQ6;Q96FG8;G3XAB4;P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 1 1 41.392 41.822 2 0.0036025 13820 20181213_JW_Orientia_Karp_1_2 141.46 86.993 5984800 0 5025000 0 0 0 0 0 959840 1704 913 1488 10559;10560;10561 6902;6903 6903 521 1 EAYPEEAYIADLDAK Unmodified 1696.7832 0.7831971 54 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396-2;P53396 ACLY;ACLY variant protein ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 1 1 59.843 60.018 2 0.0014075 25316 20181213_JW_Orientia_Karp_1_2 144.28 103.69 22607000 13087000 9519900 0 0 0 0 0 0 1705 54 1489 10562;10563 6904;6905 6905 2 EAYPGDVFYLHSR Unmodified 1552.731 0.73104237 1380;1628 Karp_02117;V9HW26;P25705-2;P25705;P25705-3 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 2 2 2 1 1 51.075 51.354 2;3 0.0027683 18178 20181213_JW_Orientia_Karp_2_1 118.77 87.698 638170000 202480000 119350000 33867000 133540000 75461000 69893000 0 3577600 1706 1380;1628 1490 10564;10565;10566;10567;10568;10569;10570;10571;10572;10573;10574;10575;10576 6906;6907;6908;6909;6910 6907 5 ECADLWPR Unmodified 1045.4651 0.46511462 50 J3KTJ3;Q9BTQ7;A0A024R1Q8;P62829 RPL23 60S ribosomal protein L23 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 47.949 48.251 2 0.017382 17929 20181213_JW_Orientia_Karp_1_1 91.9 15.679 26945000 5747900 8164200 6944300 1943400 688030 1548200 0 1909200 1707 50 1491 10577;10578;10579;10580;10581;10582;10583 6911 6911 1 ECCDKPLLEK Unmodified 1290.5948 0.59480816 792 CON__P02769 yes yes 0 0 0 1 By MS/MS 1 27.917 28.366 2 0.013287 6644 20181213_JW_Orientia_Karp_2_1 134.77 44.165 0 0 0 0 0 0 0 0 0 + 1708 792 1492 10584 6912 6912 1 ECCHGDLLECADDR Unmodified 1748.6553 0.65525294 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 36.332 36.648 2;3 0.00090648 10171 20181213_JW_Orientia_Karp_3_2 127.02 112.33 162380000 20670000 0 47957000 6705700 14653000 10793000 61601000 0 + 1709 792 1493 10585;10586;10587;10588;10589;10590;10591;10592 6913;6914;6915;6916;6917;6918;6919 6919 7 ECDIILAEAYK Unmodified 1323.6381 0.63805318 1106 Karp_00284 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.362 55.688 2 4.5876E-13 20560 20181213_JW_Orientia_Karp_2_2 219.7 135.09 267300000 77271000 54665000 79349000 23638000 29460000 0 0 2915600 1710 1106 1494 10593;10594;10595;10596;10597;10598 6920;6921;6922;6923;6924 6923 5 ECLPLIIFLR Unmodified 1272.7264 0.72641468 442 Q96IR1;Q53HV1;B2R491;P62701;A6NH36;B7Z1M6 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 75.016 75.032 2 0.005253 34646 20181213_JW_Orientia_Karp_1_3 109.01 67.033 15206000 8087700 0 5388100 0 0 0 1730600 0 1711 442 1495 10599;10600;10601 6925 6925 1 EDAANNYAR Unmodified 1022.4417 0.44173664 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;F8VVB9;F8VRZ4;F8VS66;F8VWV9;F8VX09;Q6QMJ5;C9JDL2;C9JEV8;C9JQ00;C9JJQ8;A6NHL2-2;A6NHL2;C9K0S6;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B7Z1K5;Q13748-2;Q8N532;C9J2C0;Q9NY65-2;Q9NY65;F8VQQ4;Q7Z3M3 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA1;TUBAL3;TUBA8;TUBA2;TUBA3C;DKFZp686L04275 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-8 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 21.381 21.74 2 0.00024577 4654 20181213_JW_Orientia_Karp_1_1 171.38 91.788 22934000 4942500 0 8995700 1985500 1039000 2212400 2133900 1624900 1712 512;1887 1496 10602;10603;10604;10605;10606;10607;10608 6926;6927;6928;6929;6930;6931;6932 6927 7 EDAQVAAEILEIADTPSGDK Unmodified 2070.9957 0.99570907 1570 P08133-2;P08133;Q6ZP35;E7EMC6;B7Z582 ANXA6 Annexin A6;Annexin yes no 0 0 0 0 By MS/MS By matching 1 1 72.059 72.238 2 0.004239 33137 20181213_JW_Orientia_Karp_1_2 122.31 75.825 5534500 0 4038400 0 0 0 0 0 1496000 1713 1570 1497 10609;10610 6933 6933 1 EDAVLEYLK Unmodified 1078.5546 0.55464113 1630 V9HWC0;P26038;Q6PJT4 HEL70;MSN Moesin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 57.255 57.255 2 0.0013317 23960 20181213_JW_Orientia_Karp_1_1 127.02 32.759 4185100 4185100 0 0 0 0 0 0 0 1714 1630 1498 10611;10612 6934;6935 6934 2 EDDVPQFTSAGENFDK Unmodified 1797.7693 0.76933795 1639 V9HW38;P28838-2;P28838;H0Y983 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS 1 2 54.258 54.492 2 0.0027029 22217 20181213_JW_Orientia_Karp_1_1 113.37 78.614 110170000 30167000 80002000 0 0 0 0 0 0 1715 1639 1499 10613;10614;10615 6936;6937 6936 2 EDEMEENLTQVGSILGNLK Oxidation (M) 2134.01 0.0099789239 187 A0A024R9R8;A8K287;O00161-2;O00161;H3BV99;H3BP15;H3BQY9 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 70.972 71.091 3 0.00020348 28512 20181213_JW_Orientia_Karp_2_2 125.96 80.238 11905000 0 0 2062700 650300 3000800 1617200 4573800 0 1716 187 1500 10616;10617;10618;10619;10620 6938 6938 144 1 EDENVPFLLVGNK Unmodified 1472.7511 0.75110911 1588 P11233;H7C3P7 RALA Ras-related protein Ral-A yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 66.74 66.899 2 0.0015414 29513 20181213_JW_Orientia_Karp_1_2 131.42 71.251 63291000 0 10258000 22483000 8709000 13335000 8505600 0 0 1717 1588 1501 10621;10622;10623;10624;10625 6939;6940;6941 6939 3 EDEYPFYQK Unmodified 1217.5241 0.52406928 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 46.091 46.427 2 6.5098E-14 16371 20181213_JW_Orientia_Karp_1_2 226.68 130.18 3408600000 568950000 961710000 631660000 403860000 141410000 267880000 45594000 387500000 1718 1375 1502 10626;10627;10628;10629;10630;10631;10632;10633;10634;10635 6942;6943;6944;6945;6946;6947;6948;6949;6950;6951;6952 6943 11 EDGQCFLTEQQTK Unmodified 1582.6933 0.69333623 1139 Karp_00451 yes yes 0 0 0 0 By MS/MS By matching 1 1 41.646 42.147 2 2.2042E-45 14019 20181213_JW_Orientia_Karp_1_2 259.18 142.81 36131000 0 23051000 0 0 0 0 13079000 0 1719 1139 1503 10636;10637 6953;6954 6954 2 EDIEFILGSGK Unmodified 1206.6132 0.61321864 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.284 62.596 2 4.2527E-09 27265 20181213_JW_Orientia_Karp_1_1 214.71 158.27 57994000 0 0 30520000 773920 10471000 7194800 0 9034000 1720 1252 1504 10638;10639;10640;10641;10642;10643;10644 6955;6956;6957;6958;6959;6960;6961 6955 7 EDIINQVSSYDPTFNK Unmodified 1868.8792 0.87922275 1295 Karp_01184 yes yes 0 0 0 0 By MS/MS 1 61.808 62.256 2 0.00034649 24404 20181213_JW_Orientia_Karp_2_1 140.01 94.345 1009300 0 0 0 1009300 0 0 0 0 1721 1295 1505 10645 6962 6962 1 EDIIQGFR Unmodified 976.49779 0.49779495 1591 Q53T09;P13010 XRCC5 X-ray repair cross-complementing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 50.379 50.678 2 0.0041549 19607 20181213_JW_Orientia_Karp_1_1 147.52 28.228 25560000 10747000 10818000 0 3995200 0 0 0 0 1722 1591 1506 10646;10647;10648 6963;6964 6963 2 EDIVEELLR Unmodified 1114.587 0.58700389 1345 Karp_01521 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.953 70.097 2 9.319E-05 25162 20181213_JW_Orientia_Karp_3_1 189.82 62.363 48288000 9162400 5271800 13650000 0 4773300 2471100 11178000 1782000 1723 1345 1507 10649;10650;10651;10652;10653;10654;10655 6965;6966;6967;6968;6969;6970;6971;6972 6971 8 EDIVTEQIDFSAAR Unmodified 1592.7682 0.76821574 40 A0A024R152;Q9Y2D5-6;Q9Y2D5-4;C9JVY5;A0A024R167;B4E2K2;Q9Y2D5;Q9Y2D5-5;Q9Y2D5-7 hCG_28765;AKAP2 A-kinase anchor protein 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 59.865 60.256 2 0.0021365 23003 20181213_JW_Orientia_Karp_2_2 124.48 88.167 8969600 0 0 0 0 4029300 3199700 857010 883600 1724 40 1508 10656;10657;10658;10659 6973 6973 1 EDIYSGGGGGGSR Unmodified 1210.5214 0.52144352 1788 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 27.873 28.163 2 0.0024803 7533 20181213_JW_Orientia_Karp_1_1 121.29 82.265 18597000 9010600 4547700 3592900 0 0 520490 925410 0 1725 1788 1509 10660;10661;10662;10663;10664 6974;6975;6976 6974 3 EDLHDMLASLGK Unmodified 1327.6442 0.6442012 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.784 61.105 2 4.0354E-17 26398 20181213_JW_Orientia_Karp_1_1 223.31 180.96 283520000 72730000 88381000 48065000 9886800 28477000 22826000 575040 12579000 1726 1498;1626;1831 1510 10665;10666;10667;10668;10669;10670;10671;10672 6977;6978;6979;6980;6981;6982;6983 6977 7 EDLHDMLASLGK Oxidation (M) 1343.6391 0.63911582 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 0 1 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 46.534 46.812 2 0.0042049 14873 20181213_JW_Orientia_Karp_3_2 108.43 41.469 136410000 50941000 47463000 0 0 0 15789000 0 22218000 1727 1498;1626;1831 1510 10673;10674;10675;10676;10677 6984;6985 6985 1104 2 EDLRLPEGDLGK Unmodified 1340.6936 0.69359423 1018 I3L397;I3L504;P63241;P63241-2 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 yes no 0 0 0 1 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 46.238 46.488 3 0.026221 15602 20181213_JW_Orientia_Karp_2_1 96.334 67.089 160690000 55365000 69610000 20640000 10179000 0 4895500 0 0 1728 1018 1511 10678;10679;10680;10681;10682 6986;6987 6987 2 EDLRPSAPQQEGEASK Unmodified 1740.8279 0.82785588 1527 Q6FHG5;O76070;A9XXE1 SNCG Gamma-synuclein yes no 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 29.212 29.6 3 0.012407 7338 20181213_JW_Orientia_Karp_3_1 94.339 64.789 30115000 7565100 9397300 0 5439000 0 0 7714100 0 1729 1527 1512 10683;10684;10685;10686 6988 6988 1 EDLTDIILNIR Unmodified 1313.7191 0.7190807 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 74.692 74.718 2 1.7904E-39 27824 20181213_JW_Orientia_Karp_3_1 275 134.91 145650000 58579000 33217000 34744000 0 9680600 6228300 0 3201500 1730 1219 1513 10687;10688;10689;10690;10691;10692;10693 6989;6990;6991;6992;6993;6994 6994 6 EDLTQNLGTIASSGTQK Unmodified 1761.8745 0.87447172 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.207 52.552 2 2.4881E-189 19121 20181213_JW_Orientia_Karp_2_3 374.82 279.34 1284700000 325070000 253660000 388550000 66641000 82872000 63078000 101730000 3119500 1731 1251 1514 10694;10695;10696;10697;10698;10699;10700;10701 6995;6996;6997;6998;6999;7000;7001;7002;7003;7004 7002 10 EDLVFIFWAPESAPLK Unmodified 1860.9662 0.96618726 1625 V9HWI5;P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;Q549N0;Q9Y281-3;Q9Y281 HEL-S-15;CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.678 76.673 2 0.00021209 28938 20181213_JW_Orientia_Karp_3_1 178.1 113.66 319000000 42470000 18751000 33704000 47485000 56501000 25668000 85299000 9125700 1732 1625 1515 10702;10703;10704;10705;10706;10707;10708;10709 7005;7006;7007;7008;7009;7010;7011;7012 7011 8 EDLVYQAK Unmodified 964.48656 0.48656157 1728 V9HW98;P62258;G9K389;G9K388;B4DJF2;I3L3T1;B4DJB0;I3L0W5 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 35.88 36.364 2 0.0042232 10669 20181213_JW_Orientia_Karp_3_1 134.81 55.36 26417000 0 0 0 10189000 0 4049500 12179000 0 1733 1728 1516 10710;10711;10712;10713 7013;7014;7015;7016 7016 4 EDNDDIVGIISSINAESSDQVTSNNANAQQAEYVDVK Unmodified 3951.8094 0.80937145 1108 Karp_00286 yes yes 0 0 0 0 By MS/MS By matching 1 1 73.741 73.765 3 0.008788 34149 20181213_JW_Orientia_Karp_1_1 44.313 31.164 47191000 26298000 20893000 0 0 0 0 0 0 1734 1108 1517 10714;10715 7017 7017 1 EDNDDIVGIISSINAESSDQVTSNNANAQQAEYVDVK Deamidation (NQ) 3952.7934 0.79338703 1108 Karp_00286 yes yes 0 1 0 0 By MS/MS By matching By matching By matching 1 1 1 1 74.902 74.901 3 0.0036536 34836 20181213_JW_Orientia_Karp_1_1 56.957 40.203 41559000 14039000 11330000 14052000 0 0 2138400 0 0 1735 1108 1517 10716;10717;10718;10719 7018 7018 482;483;484;485;1806;1807 1 EDNDDIVGIISSINAESSDQVTSNNANAQQAEYVDVK 2 Deamidation (NQ) 3953.7774 0.77740262 1108 Karp_00286 yes yes 0 2 0 0 By matching By MS/MS By matching 1 1 1 75.473 75.489 3 0.0022014 35245 20181213_JW_Orientia_Karp_1_2 56.211 46.241 34533000 9679600 11482000 13372000 0 0 0 0 0 1736 1108 1517 10720;10721;10722 7019 7019 482;483;484;485;1806;1807 1 EDNHSSFPIVQGDISQVDTLK Unmodified 2328.1234 0.1233692 1326 Karp_01350 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 60.008 60.257 3 0.003819 25238 20181213_JW_Orientia_Karp_1_3 84.371 39.628 55685000 16694000 18393000 15900000 4698100 0 0 0 0 1737 1326 1518 10723;10724;10725;10726 7020;7021;7022 7021 3 EDPNLVPSISNK Unmodified 1311.667 0.66704513 1582 Q6FHM4;P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 49.129 49.43 2 0.0066518 18148 20181213_JW_Orientia_Karp_1_3 103.21 56.751 122900000 27580000 33008000 31077000 10613000 6331700 8505000 0 5786000 1738 1582 1519 10727;10728;10729;10730;10731;10732;10733 7023;7024;7025;7026 7024 4 EDQLLCTDCYSNEYSSK Unmodified 2110.846 0.84595006 1030 Q6I9R8;Q2TSB7;Q2XQU9;J3KNW4;Q14192;Q53QP3;I0CE67 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 49.765 50.417 2 0.0065192 16972 20181213_JW_Orientia_Karp_3_1 115.09 101.13 2276400 0 0 0 0 0 0 2276400 0 1739 1030 1520 10734;10735 7027;7028 7028 2 EDQSILCTGESGAGK Unmodified 1550.6883 0.68825085 47;944;919 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;Q5BKV1;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;E7ERA5;F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4;M0QY43 MYH9;MYH10;MYH14 Myosin-9;Myosin-10;Myosin-14 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 40.485 40.787 2 2.3824E-21 13791 20181213_JW_Orientia_Karp_1_1 225.72 170 120940000 36984000 26652000 22177000 0 2811800 3010500 13625000 15681000 1740 47;944;919 1521 10736;10737;10738;10739;10740;10741;10742 7029;7030;7031 7029 3 EDSNLESSQLTVQAEFDMSAIPR Oxidation (M);3 Deamidation (NQ) 2585.1327 0.13267283 519 B3KRD0;B3KTD2;B3KVE5;Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 3 1 0 By MS/MS By matching By matching By matching 1 1 1 1 41.683 41.858 3 0.038821 14374 20181213_JW_Orientia_Karp_1_1 44.5 13.965 34084000 21438000 7155300 5005000 0 486000 0 0 0 1741 519 1522 10743;10744;10745;10746 7032 7032 1492;1493 1 EDSPTMVRVDSPTMVR Acetyl (Protein N-term);Oxidation (M) 1876.8659 0.86589764 270 J7FH15;K7EKN6;Q96KQ5;M0QYS8;R9S1V0;E9NSU1;A0A068W8S0;G0W2N5;F6IQ87;A0A068WAZ5;A0A068W6W9;Q13336 SLC14A1;UT-B1;HUT11;SLC14A1 JK Urea transporter 1 yes no 1 0 1 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.265 52.555 2 0.023114 18361 20181213_JW_Orientia_Karp_3_1 89.561 20.775 4294000000 416630000 410180000 1289500000 0 0 707860000 1469900000 0 1742 270 1523 10747;10748;10749;10750;10751 7033 7033 191 1 EDTESLEIFQNEVAR Unmodified 1778.8323 0.83227255 1961 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 By MS/MS 1 62.074 62.424 2 0.023054 26913 20181213_JW_Orientia_Karp_1_2 99.669 49.185 0 0 0 0 0 0 0 0 0 1743 1961 1524 10752 7034 7034 1 EDTIVSQTQDFTK Unmodified 1510.7151 0.71511753 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;B7Z8U8 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 47.854 48.104 2 6.6903E-35 17250 20181213_JW_Orientia_Karp_1_3 280.38 225.84 98250000 22060000 30691000 27958000 11745000 5795600 0 0 0 1744 274 1525 10753;10754;10755;10756;10757;10758 7035;7036;7037;7038 7036 4 EDTSPAVLGLAAR Unmodified 1298.683 0.68302954 1794 Q5CZI2;Q14112-2;Q14112 DKFZp686D12108;NID2 Nidogen-2 yes no 0 0 0 0 By MS/MS 1 54.586 54.586 2 0.0098242 22221 20181213_JW_Orientia_Karp_1_1 112.3 40.006 0 0 0 0 0 0 0 0 0 1745 1794 1526 10759 7039 7039 1 EDVFVHQTAIK Unmodified 1285.6667 0.6666512 1745;204;1939 P67809;Q6PKI6;Q05D43;Q7KZ24;H0Y449;B2RCC2;Q9Y2T7;A0A024RAV4;A0A024RAQ1;P16989-2;P16989-3;P16989;Q59EB5;Q96GD7 YBX1;YBX2;CSDA;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 no no 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.353 38.698 2 3.9511E-07 11138 20181213_JW_Orientia_Karp_2_2 185.33 119.06 225520000 24960000 37269000 28408000 60457000 26649000 0 43117000 4665000 1746 1745;204;1939 1527 10760;10761;10762;10763;10764;10765;10766 7040;7041;7042 7040 3 EDVSQYSDAYQYER Unmodified 1751.7275 0.72747313 1327 Karp_01361 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 45.457 45.822 2 3.464E-73 16014 20181213_JW_Orientia_Karp_1_2 297.18 232.47 33058000 0 9947000 14123000 2525500 1300600 1952600 546750 2662600 1747 1327 1528 10767;10768;10769;10770;10771;10772;10773 7043;7044;7045;7046;7047 7043 5 EDVVVNELSK Deamidation (NQ) 1131.5659 0.5659341 1296 Karp_01187 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 2 1 1 44.844 45.144 2 1.4293E-06 16413 20181213_JW_Orientia_Karp_2_2 188.87 126.33 206990000 57317000 0 32525000 41901000 29293000 22457000 23500000 0 1748 1296 1529 10774;10775;10776;10777;10778;10779;10780;10781;10782;10783;10784;10785 7048;7049;7050;7051;7052;7053;7054;7055 7053 708 8 EDVVVNELSK Unmodified 1130.5819 0.58191851 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 3 1 1 1 1 43.751 44.052 2 1.24E-24 14808 20181213_JW_Orientia_Karp_2_3 242.12 159.37 3570700000 931300000 1270000000 851680000 9542200 12639000 238870000 255310000 1415700 1749 1296 1529 10786;10787;10788;10789;10790;10791;10792;10793;10794;10795;10796;10797 7056;7057;7058;7059;7060;7061;7062;7063 7062 8 EEAATTALAGLAR Unmodified 1272.6674 0.66737948 689 B4E3H8;Q9H8L6;B4DEW5 MMRN2 Multimerin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 50.52 50.828 2 3.7806E-07 17206 20181213_JW_Orientia_Karp_3_1 221.5 130.67 39939000 6921100 8428900 4458800 5573700 3622300 5533200 5400800 0 1750 689 1530 10798;10799;10800;10801;10802;10803;10804 7064;7065;7066;7067;7068 7068 5 EEAEALYHSK Unmodified 1175.5459 0.54586736 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS 1 25.873 26.122 2 0.026795 6287 20181213_JW_Orientia_Karp_1_2 91.265 33.035 0 0 0 0 0 0 0 0 0 + 1751 804;1657 1531 10805 7069 7069 1 EEAENTLQSFR Unmodified 1322.6103 0.61025853 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 42.544 42.814 2 8.3468E-20 13252 20181213_JW_Orientia_Karp_3_2 233.09 173.07 8597100000 3474200000 1813000000 1994000000 0 544010000 0 771880000 0 1752 1571 1532 10806;10807;10808;10809;10810;10811;10812;10813 7070;7071;7072;7073;7074;7075;7076;7077 7077 8 EEAENTLQSFR Deamidation (NQ) 1323.5943 0.59427411 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 1 1 1 45.392 45.744 2 3.148E-34 16572 20181213_JW_Orientia_Karp_1_1 261.03 182.92 192310000 38704000 133520000 0 6638900 4280800 0 1367700 7801200 1753 1571 1532 10814;10815;10816;10817;10818;10819;10820;10821;10822 7078;7079;7080;7081;7082;7083;7084 7078 1043 7 EEAENTLQSFRQDVDNASLAR Unmodified 2392.1255 0.12549446 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.797 54.154 3 0.00033134 21247 20181213_JW_Orientia_Karp_1_3 135.43 102.92 197270000 53794000 26340000 71840000 13075000 15008000 8843000 2965900 5405200 1754 1571 1533 10823;10824;10825;10826;10827;10828;10829;10830 7085;7086 7086 2 EEANAIMHAYNNNLR 4 Deamidation (NQ) 1762.7468 0.74682837 1252 Karp_00931 yes yes 0 4 0 0 By MS/MS 1 56.097 56.295 2 0.035421 22550 20181213_JW_Orientia_Karp_1_3 41.689 6.0952 21515000 0 0 21515000 0 0 0 0 0 1755 1252 1534 10831 7087 7087 0 EEAQVTPDSDK Unmodified 1217.5412 0.54117591 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.044 25.401 2 3.5786E-09 6266 20181213_JW_Orientia_Karp_1_1 199.33 131.84 149850000 31930000 41588000 24511000 8327300 4374200 2927900 23593000 12600000 1756 1520 1535 10832;10833;10834;10835;10836;10837;10838;10839 7088;7089;7090;7091;7092;7093;7094;7095;7096 7088 9 EEASDYLELDTIK Unmodified 1524.7195 0.71953421 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;Q96GW1 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 59.904 60.178 2 3.0184E-11 25425 20181213_JW_Orientia_Karp_1_2 199.03 143.95 52020000 0 28105000 23915000 0 0 0 0 0 1757 1598 1536 10840;10841 7097;7098 7097 2 EEAWSVLEEAQK Unmodified 1417.6725 0.67252444 1095 Karp_00244 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 56.003 56.362 2 1.6081E-30 23328 20181213_JW_Orientia_Karp_1_1 265.31 100.86 153360000 47952000 0 35577000 18408000 22177000 23153000 3999900 2094600 1758 1095 1537 10842;10843;10844;10845;10846;10847;10848;10849 7099;7100;7101;7102;7103 7099 5 EEDGVPGIVLR Unmodified 1182.6245 0.62445203 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 55.77 56.091 2 0.00012967 23133 20181213_JW_Orientia_Karp_1_1 159.28 93.006 166490000 44467000 31346000 32983000 5932500 11246000 20395000 20122000 0 1759 1169 1538 10850;10851;10852;10853;10854;10855;10856 7104;7105;7106;7107 7104 4 EEDKEPLIELFVK Unmodified 1587.8396 0.83958976 1863 Q6FIC5;Q9Y696;Q9NVF8 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 65.939 66.081 3 0.0010073 29423 20181213_JW_Orientia_Karp_1_1 142.91 70.205 81470000 49079000 0 7537600 0 10220000 3309900 0 11324000 1760 1863 1539 10857;10858;10859;10860;10861;10862 7108;7109;7110 7108 3 EEEDVSGEPEASPSADTTILFVK Unmodified 2449.1384 0.13841014 459 C9J3L8;C9J5W0;B2R6N9;E9PAL7;C9IZQ1;P43307;C9JBX5 SSR1 Translocon-associated protein subunit alpha yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 65.544 65.627 3 7.6667E-06 28416 20181213_JW_Orientia_Karp_1_3 124.73 85.45 32077000 19945000 0 6061500 0 6070600 0 0 0 1761 459 1540 10863;10864;10865 7111 7111 1 EEEGTAEDGADSK Unmodified 1336.5266 0.52664806 1100 Karp_00268 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 18.366 18.599 2 7.3697E-05 3266 20181213_JW_Orientia_Karp_1_3 166.69 76.806 9156600 2816900 1828100 2708000 612040 0 444970 746660 0 1762 1100 1541 10866;10867;10868;10869;10870;10871 7112;7113;7114;7115;7116 7114 5 EEEIAALVIDNGSGMCK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1893.8336 0.83359446 1743 P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes no 1 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 76.056 76.051 2 1.6675E-141 35492 20181213_JW_Orientia_Karp_1_2 337.53 283.33 902110000 213380000 134620000 195880000 38706000 52961000 34844000 191660000 40067000 1763 1743 1542 10872;10873;10874;10875;10876;10877;10878;10879;10880 7117;7118;7119;7120;7121;7122;7123;7124;7125;7126 7119 1144 1367 10 EEEIAALVIDNGSGMCK Acetyl (Protein N-term);Deamidation (NQ) 1877.8387 0.83867984 1743 P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes no 1 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 77.085 77.079 2 8.3822E-84 35857 20181213_JW_Orientia_Karp_1_3 298.91 248.81 540450000 149230000 125980000 82998000 16358000 19383000 33518000 98923000 14069000 1764 1743 1542 10881;10882;10883;10884;10885;10886;10887;10888 7127;7128;7129;7130;7131;7132;7133;7134;7135;7136;7137 7131 1144 11 EEEIAALVIDNGSGMCK Acetyl (Protein N-term);Oxidation (M) 1892.8496 0.84957888 1743 P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes no 1 0 1 0 By MS/MS 1 75.174 75.224 2 0.0022175 28041 20181213_JW_Orientia_Karp_3_1 109.84 62.55 0 0 0 0 0 0 0 0 0 1765 1743 1542 10889 7138 7138 1367 1 EEEWDPEYTPK Unmodified 1421.5987 0.59869079 2009 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 no no 0 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 47.536 47.881 2 0.017708 15439 20181213_JW_Orientia_Karp_3_2 86.624 52.758 31286000 3583000 6907700 6321700 4295300 3079000 3555700 292980 3250400 1766 2009 1543 10890;10891;10892;10893;10894;10895;10896;10897 7139 7139 1 EEFEHQQK Unmodified 1073.4778 0.47778779 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96BE0;Q96H53;E9PS65;Q9NZ87;Q9NWW3;E9PM13 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 15.066 15.316 2 0.0045088 2707 20181213_JW_Orientia_Karp_1_1 130.04 1.5548 2309500 743330 0 619450 449630 0 0 497120 0 1767 1586 1544 10898;10899;10900;10901 7140;7141;7142 7140 3 EEFTAFLHPEEFEHMK Oxidation (M) 2035.8986 0.89857798 1805 V9HW95;Q15293;Q15293-2;Q5J7V8;E9PP27 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 54.713 55.05 3 0.039026 20294 20181213_JW_Orientia_Karp_2_1 65.895 43.42 49417000 0 12475000 8534800 17449000 0 10959000 0 0 1768 1805 1545 10902;10903;10904;10905 7143 7143 1 EEFTDWIK Unmodified 1066.4971 0.49712625 1153 Karp_00558 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.565 59.775 2 0.012753 23046 20181213_JW_Orientia_Karp_2_3 99.375 8.5983 51766000 31527000 3589000 5211600 0 4531100 6907200 0 0 1769 1153 1546 10906;10907;10908;10909;10910 7144;7145;7146 7146 3 EEGAASTAEEAAK Unmodified 1262.5626 0.56263964 542 F8VSC4;F8VY03;G3V1U3;B3KWL6;F8VRR3;F8VQZ7;P50579-2;B4DUX5;P50579 METAP2 Methionine aminopeptidase;Methionine aminopeptidase 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 25.236 25.558 2 7.5899E-05 6353 20181213_JW_Orientia_Karp_1_1 166.29 94.06 11087000 3243600 0 2830600 1053700 1883600 0 0 2075300 1770 542 1547 10911;10912;10913;10914;10915 7147;7148 7147 2 EEGGENLDQAR Unmodified 1216.532 0.53200821 1570 P08133-2;P08133;Q6ZP35;E7EMC6;E5RK69;B7Z582 ANXA6 Annexin A6;Annexin yes no 0 0 0 0 By MS/MS By matching 1 1 26.24 26.771 2 0.036718 5397 20181213_JW_Orientia_Karp_2_2 75.652 36.902 1230800 0 0 0 0 570230 0 0 660570 1771 1570 1548 10916;10917 7149 7149 1 EEGLYAVDVTYDGHPVPGSPYTVEASLPPDPSK Unmodified 3485.6515 0.65146123 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 67.246 67.456 3 4.0543E-07 30093 20181213_JW_Orientia_Karp_1_1 97.128 68.353 42262000 12671000 3909800 10339000 0 0 3538600 4579200 7225300 1772 1520 1549 10918;10919;10920;10921;10922;10923;10924 7150;7151;7152;7153;7154;7155;7156;7157;7158 7150 9 EEGPYEVEVTYDGVPVPGSPFPLEAVAPTK Unmodified 3172.5492 0.54922799 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 74.862 74.878 3 7.7459E-06 34582 20181213_JW_Orientia_Karp_1_3 93.546 61.727 41338000 12655000 6974900 21708000 0 0 0 0 0 1773 1615 1550 10925;10926;10927 7159;7160;7161;7162 7162 4 EEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK Unmodified 3484.729 0.72898327 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 72.27 72.346 3 2.2899E-09 33277 20181213_JW_Orientia_Karp_1_2 118.67 96.012 329660000 73892000 106170000 66244000 0 16578000 0 48136000 18635000 1774 1615 1551 10928;10929;10930;10931;10932;10933 7163;7164;7165 7164 3 EEHEVAVLGAPHNPAPPTSTVIHIR Unmodified 2670.3878 0.38779758 914 E9PS44;H9NL19;H9NKY4;Q01628 IFITM3 Interferon-induced transmembrane protein 3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 47.209 47.409 5 0.005284 17187 20181213_JW_Orientia_Karp_1_2 57.806 36.634 148820000 35967000 41310000 57900000 0 0 13639000 0 0 1775 914 1552 10934;10935;10936;10937 7166;7167;7168;7169 7168 4 EEHEVAVLGAPPSTILPR Unmodified 1914.0211 0.021076378 61 A0A024R210 IFITM1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.808 58.109 3 0.018632 23848 20181213_JW_Orientia_Karp_1_3 82.663 47.565 213210000 60616000 30408000 84045000 6473200 16443000 9482600 0 5742800 1776 61 1553 10938;10939;10940;10941;10942;10943;10944 7170;7171;7172;7173;7174;7175;7176;7177 7173 8 EEIAHNMQSTLDDATDAWGIK Oxidation (M) 2360.0591 0.059054382 160 B4E2V5;B4DZK8;A0A024R882;P27105 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 1 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 52.019 52.414 3 0.015911 19086 20181213_JW_Orientia_Karp_2_3 71.969 45.823 73937000 0 7691000 18160000 12052000 14736000 13593000 5614800 2090900 1777 160 1554 10945;10946;10947;10948;10949;10950;10951 7178 7178 132 1 EEIFGPVQQIMK Unmodified 1417.7275 0.72753689 1538 V9HW83;V9HVX6;P00352;B4DXX3;B4DDF8 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 63.566 63.802 2 1.9598E-08 28060 20181213_JW_Orientia_Karp_1_1 200.56 134 53099000 17326000 16665000 15681000 0 0 1606500 66638 1753400 1778 1538 1555 10952;10953;10954;10955;10956;10957 7179;7180 7179 2 EEILAQAK Unmodified 900.49165 0.49164694 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 33.2 33.559 2 0.010649 8855 20181213_JW_Orientia_Karp_2_1 102.77 41.801 25076000 6335500 0 5236300 5214700 627590 1153700 5890700 617720 1779 47 1556 10958;10959;10960;10961;10962;10963;10964 7181;7182 7181 2 EEINEYTFNIR Deamidation (NQ) 1427.6569 0.65687437 1375 Karp_02111 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 2 56.891 57.263 2 7.0023E-18 20204 20181213_JW_Orientia_Karp_3_2 228.84 144.96 420390000 75599000 102900000 109310000 29149000 42803000 36427000 3116900 21086000 1780 1375 1557 10965;10966;10967;10968;10969;10970;10971;10972;10973;10974 7183;7184;7185;7186;7187;7188;7189;7190 7190 857 8 EEINEYTFNIR Unmodified 1426.6729 0.67285879 1375 Karp_02111 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.087 55.403 2 7.6834E-89 22269 20181213_JW_Orientia_Karp_1_2 320.02 249.62 6256700000 2212500000 1060100000 1285600000 307560000 852680000 463670000 0 74628000 1781 1375 1557 10975;10976;10977;10978;10979;10980;10981 7191;7192;7193;7194;7195;7196;7197 7191 7 EEIVVEHLVNVNR Unmodified 1548.826 0.82600539 1225 Karp_00892 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 49.544 49.845 2;3 0.0015042 16575 20181213_JW_Orientia_Karp_3_2 131.82 93.543 252260000 63885000 62662000 30747000 48394000 20026000 21581000 0 4967800 1782 1225 1558 10982;10983;10984;10985;10986;10987;10988;10989;10990;10991;10992;10993;10994;10995 7198;7199;7200;7201 7201 4 EELALLDGSNVVFK Unmodified 1532.8086 0.80862399 1503 Q5STK2;O15212;I7HJT1;A2AB88 PFDN6;HKE2 Prefoldin subunit 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.136 69.28 2 3.0014E-73 30844 20181213_JW_Orientia_Karp_1_3 297.83 206.57 435440000 48016000 29654000 17770000 0 91728000 50945000 121980000 75345000 1783 1503 1559 10996;10997;10998;10999;11000;11001;11002 7202;7203;7204;7205;7206;7207;7208;7209 7205 8 EELDFQK Unmodified 907.42871 0.42871234 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 37.942 38.258 2 0.017678 11996 20181213_JW_Orientia_Karp_1_2 106.42 21.056 92546000 34965000 22546000 25941000 3109200 540610 0 5445400 0 1784 1543;1544;1851 1560 11003;11004;11005;11006;11007;11008 7210 7210 1 EELQANGSAPAADK Deamidation (NQ) 1400.642 0.64195259 1642 P29966;Q6NVI1 MARCKS Myristoylated alanine-rich C-kinase substrate yes no 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 2 2 2 1 2 31.983 32.326 2 3.0568E-05 9229 20181213_JW_Orientia_Karp_1_1 173.76 109.34 47694000 3347800 8716600 15113000 4524600 6021300 4365400 4842400 762250 1785 1642 1561 11009;11010;11011;11012;11013;11014;11015;11016;11017;11018;11019;11020;11021;11022 7211;7212;7213;7214;7215;7216 7211 1093 6 EELQSGVDAANSAAQQYQR Unmodified 2063.9508 0.95082456 235 A4QPB0;A0A024RC65;P46940;Q6P1N4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.684 44.859 2 8.728E-186 15574 20181213_JW_Orientia_Karp_1_3 369.51 307.17 41549000 20546000 21003000 0 0 0 0 0 0 1786 235 1562 11023;11024;11025 7217;7218;7219 7219 3 EELSNVLAAMR Oxidation (M) 1247.618 0.61798644 2013 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 47.879 48.251 2 2.16E-25 17345 20181213_JW_Orientia_Karp_1_3 242.12 159.69 113420000 13000000 34643000 27014000 15582000 0 5429900 79145 17668000 1787 2013 1563 11026;11027;11028;11029;11030;11031;11032 7220;7221;7222;7223 7222 1536 4 EELSNVLAAMR Unmodified 1231.6231 0.62307182 2013 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 2 59.859 60.067 2 1.1341E-25 25707 20181213_JW_Orientia_Karp_1_1 250.12 162.94 93825000 41302000 24126000 22037000 1699200 4660300 0 0 0 1788 2013 1563 11033;11034;11035;11036;11037;11038;11039;11040 7224;7225;7226;7227;7228;7229;7230 7224 7 EELVIPDR Unmodified 969.51311 0.51311067 1188 Karp_00703 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 46.149 46.324 2 0.014686 16433 20181213_JW_Orientia_Karp_1_2 96.253 24.957 32041000 10740000 10928000 8756600 0 1617200 0 0 0 1789 1188 1564 11041;11042;11043;11044 7231 7231 1 EELVTPDEVNSDVLYIR Unmodified 1989.9895 0.98950148 1361 Karp_01814 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 67.304 67.536 2 8.4514E-09 26345 20181213_JW_Orientia_Karp_3_2 188.09 119.56 92669000 45048000 14680000 0 0 14707000 0 10139000 8095400 1790 1361 1565 11045;11046;11047;11048;11049 7232;7233;7234 7234 3 EELVTPDEVNSDVLYIR Deamidation (NQ) 1990.9735 0.97351706 1361 Karp_01814 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 68.604 68.824 2 3.8229E-06 24470 20181213_JW_Orientia_Karp_3_1 156.08 120.41 22501000 0 6436200 7316000 2267200 0 2597100 3884800 0 1791 1361 1565 11050;11051;11052;11053;11054 7235;7236 7236 821 2 EELYQNLTR Unmodified 1164.5775 0.57750184 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 43.295 43.615 2 0.0013986 14742 20181213_JW_Orientia_Karp_1_3 126.07 43.615 51023000 14371000 17156000 8996800 3519700 1381600 1270000 3839900 487370 1792 316 1566 11055;11056;11057;11058;11059;11060;11061;11062 7237 7237 1 EELYVPK Unmodified 876.45928 0.45928418 1428 Karp_02381 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 40.17 40.46 2 0.013696 12593 20181213_JW_Orientia_Karp_3_1 114.59 49.828 81248000 34795000 14841000 20406000 0 0 1063500 10142000 0 1793 1428 1567 11063;11064;11065;11066;11067 7238;7239;7240 7240 3 EEMSQLTGQNSGDVNVEINVAPGK Oxidation (M) 2531.181 0.18096043 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 1 1 53.195 53.445 2;3 9.463E-08 19385 20181213_JW_Orientia_Karp_2_2 145.79 96.312 88384000 17493000 11437000 9813000 13983000 25283000 10375000 0 0 + 1794 1653 1568 11068;11069;11070;11071;11072;11073;11074;11075;11076 7241;7242;7243;7244 7243 1270 4 EEMSQLTGQNSGDVNVEINVAPGK Unmodified 2515.186 0.18604581 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 2 57.497 57.806 2;3 5.0989E-15 24224 20181213_JW_Orientia_Karp_1_1 186.72 150.7 63070000 14255000 8986600 22131000 0 11164000 3746500 0 2786700 + 1795 1653 1568 11077;11078;11079;11080;11081;11082;11083;11084;11085 7245;7246;7247;7248;7249;7250;7251 7245 7 EEMSQLTGQNSGDVNVEINVAPGK Oxidation (M);Deamidation (NQ) 2532.165 0.16497602 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 1 0 By matching By matching By MS/MS By MS/MS 1 2 1 2 55.966 56.265 2;3 8.9257E-08 21167 20181213_JW_Orientia_Karp_2_3 143.91 122.81 59630000 0 11136000 27040000 4940000 0 16513000 0 0 + 1796 1653 1568 11086;11087;11088;11089;11090;11091 7252;7253 7253 1097;1941;1942 1270 2 EEPAAAGSGAASPSAAEK Unmodified 1599.7376 0.73764389 1642 P29966;Q6NVI1 MARCKS Myristoylated alanine-rich C-kinase substrate yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.947 29.305 2 7.2356E-42 7177 20181213_JW_Orientia_Karp_2_3 242.8 189.68 70818000 12265000 8375700 7806400 14107000 5959100 5674300 11268000 5362800 1797 1642 1569 11092;11093;11094;11095;11096;11097;11098;11099 7254;7255;7256;7257;7258;7259;7260;7261;7262;7263 7259 10 EEQEVAMLGAPHNPAPPTSTVIHIR Oxidation (M) 2709.3544 0.35444854 1865 Q6IBB0;Q14617 IFITM2 yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 49.058 49.175 4 0.034551 18045 20181213_JW_Orientia_Karp_1_3 43.175 27.061 14324000 5563200 0 7416700 0 1344100 0 0 0 1798 1865 1570 11100;11101;11102 7264 7264 1 EESPLLIGQQSTVSDVPR Unmodified 1954.0007 0.0007348666 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 58.078 58.379 2 1.2442E-09 22042 20181213_JW_Orientia_Karp_2_2 209.53 147.36 379540000 125370000 101430000 77439000 22593000 16757000 17014000 0 18943000 1799 85 1571 11103;11104;11105;11106;11107;11108;11109 7265;7266;7267;7268;7269 7268 5 EESQLPGTGGPEDVLQPVQR Unmodified 2135.0495 0.049475973 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 57.805 57.988 2 0.00010218 24021 20181213_JW_Orientia_Karp_1_2 130.47 66.995 16790000 6204300 4662400 5922900 0 0 0 0 0 1800 1764 1572 11110;11111;11112 7270;7271;7272 7271 3 EESREPAPASPAPAGVEIR Unmodified 1961.9807 0.98066813 1795 Q6DEN2;Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 41.12 41.369 3 0.0063846 13620 20181213_JW_Orientia_Karp_1_2 96.096 69.948 69486000 16767000 31365000 19886000 1467800 0 0 0 0 1801 1795 1573 11113;11114;11115;11116 7273;7274;7275 7274 3 EESSELEQPFAQDTSSVGPDR Unmodified 2307.0139 0.013878328 346 B7Z5X3;B7ZLP5;A8K329;Q15424;Q15424-4;Q15424-3;B7Z1C7;B7Z2F6;B7Z2Z1;Q15424-2;A0PJ47;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 2 1 53.914 54.151 2;3 8.2695E-29 21341 20181213_JW_Orientia_Karp_1_3 254.56 182.67 25194000 12642000 0 9907900 2644100 0 0 0 0 1802 346 1574 11117;11118;11119;11120 7276;7277 7277 2 EESSELEQPFAQDTSSVGPDRK Unmodified 2435.1088 0.10884135 346 B7Z5X3;B7ZLP5;A8K329;Q15424;Q15424-4;Q15424-3;B7Z1C7;B7Z2F6;B7Z2Z1;Q15424-2;A0PJ47;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 46.537 46.81 3 0.0056763 16713 20181213_JW_Orientia_Karp_1_2 78.674 39.554 124010000 35289000 23584000 36723000 4871000 6328400 10586000 0 6630200 1803 346 1575 11121;11122;11123;11124;11125;11126;11127 7278;7279;7280 7279 3 EEVFIQQR Unmodified 1047.5349 0.53490874 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 39.507 39.781 2 0.0034191 13282 20181213_JW_Orientia_Karp_1_1 154.01 80.038 113410000 48128000 35672000 25702000 3908200 0 0 0 0 1804 1466;1549 1576 11128;11129;11130;11131 7281 7281 1 EEVGEEAIVELVENGK Deamidation (NQ) 1743.8414 0.84144026 47 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99 MYH9 Myosin-9 yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 2 2 2 2 69.445 69.621 2 1.1326E-27 30149 20181213_JW_Orientia_Karp_1_3 234.49 158.16 140160000 26503000 39601000 32495000 2203100 8046500 5180200 16271000 9855800 1805 47 1577 11132;11133;11134;11135;11136;11137;11138;11139;11140;11141;11142;11143;11144;11145 7282;7283;7284;7285;7286;7287;7288 7283 16 6 EEVGEEAIVELVENGKK Deamidation (NQ) 1871.9364 0.93640328 47 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99 MYH9 Myosin-9 yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 59.401 59.651 3 0.00097866 25471 20181213_JW_Orientia_Karp_1_1 114.21 86.868 197640000 58717000 50589000 56039000 2867100 12771000 16651000 0 0 1806 47 1578 11146;11147;11148;11149;11150;11151 7289;7290;7291 7289 16 3 EEVVTVETWQEGSLK Unmodified 1732.8519 0.85194536 1574 V9HWE9;P09211;A8MX94 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 56.273 56.572 2 0.0027994 21033 20181213_JW_Orientia_Karp_2_2 160.56 111.28 73397000 26971000 25985000 0 20441000 0 0 0 0 1807 1574 1579 11152;11153;11154;11155 7292;7293;7294 7294 3 EFADSLGIPFLETSAK Unmodified 1723.8669 0.86686715 902 E9PLD0;Q6FIG4;Q9H0U4;E7END7;B7Z8M7;Q5U0I6;P62820-2;Q92928;P62820;Q96RD8 RAB1B;RAB1A;RAB1C Ras-related protein Rab-1B;Ras-related protein Rab-1A;Putative Ras-related protein Rab-1C yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 74.286 74.302 2 1.4719E-05 30305 20181213_JW_Orientia_Karp_2_1 184.1 142.41 194600000 57587000 58312000 59744000 8340100 9465000 1155800 0 0 1808 902 1580 11156;11157;11158;11159;11160;11161 7295;7296 7296 2 EFDGEAWAANGVK Deamidation (NQ) 1393.615 0.61500956 1315 Karp_01271 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 52.948 53.306 2 9.1692E-17 21073 20181213_JW_Orientia_Karp_1_1 212.82 151.26 269710000 71749000 53825000 66295000 21530000 26103000 18734000 8432800 3037900 1809 1315 1581 11162;11163;11164;11165;11166;11167;11168;11169;11170;11171;11172;11173;11174;11175;11176 7297;7298;7299;7300;7301;7302;7303;7304 7297 740 8 EFDPTITDASLSLPSR Unmodified 1747.8628 0.8628444 622 B4DPW5;B7Z6G4;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682;E9PGZ1;Q9NYG1;C9J813;Q05DR4;Q6P707;Q6PJM5 CALD1 Caldesmon yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.792 66.029 2 3.5189E-07 23065 20181213_JW_Orientia_Karp_3_1 195.72 137.05 209730000 26863000 40359000 0 17213000 53015000 20225000 26274000 25785000 1810 622 1582 11177;11178;11179;11180;11181;11182;11183 7305;7306;7307;7308;7309 7308 5 EFEFSQLPLK Unmodified 1236.639 0.63903946 1010 H7C4H2;Q549N5;Q9Y5M8 SRPRB Signal recognition particle receptor subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 1 1 64.215 64.389 2 0.002483 28111 20181213_JW_Orientia_Karp_1_2 149.82 83.517 0 0 0 0 0 0 0 0 0 1811 1010 1583 11184;11185 7310;7311 7310 2 EFEPLLNWMK Oxidation (M) 1321.6377 0.63765925 1598 Q5CAQ5;V9HWP2;P14625;B4DU71;B4DHT9;Q58FF2 TRA1;HEL-S-125m;HSP90B1;GRP94c Endoplasmin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.36 65.543 2 1.4344E-06 28314 20181213_JW_Orientia_Karp_1_3 180.87 121.89 60501000 18114000 11026000 17948000 0 4419800 2739300 6254000 0 1812 1598 1584 11186;11187;11188;11189;11190;11191 7312;7313;7314;7315;7316;7317 7314 1222 6 EFESNMLEYFR Oxidation (M) 1479.634 0.63403044 1380 Karp_02117 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 55.623 55.981 2 1.498E-05 22315 20181213_JW_Orientia_Karp_1_3 170.47 114.04 118360000 32558000 33877000 25892000 7966700 8329000 5830800 2763600 1146500 1813 1380 1585 11192;11193;11194;11195;11196;11197;11198;11199 7318;7319;7320;7321;7322 7320 978 5 EFESNMLEYFR Unmodified 1463.6391 0.63911582 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 67.16 67.387 2 2.6548E-13 30082 20181213_JW_Orientia_Karp_1_1 222.28 151.88 88732000 20289000 17858000 34493000 0 10087000 0 559400 5445800 1814 1380 1585 11200;11201;11202;11203;11204;11205 7323;7324;7325;7326 7323 4 EFEYLTAAAEK Unmodified 1270.6081 0.60813326 1364 Karp_01859 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 51.869 52.119 2 0.017212 18642 20181213_JW_Orientia_Karp_2_1 103.26 34.873 71066000 18466000 13993000 12824000 12022000 4973300 8788800 0 0 1815 1364 1586 11206;11207;11208;11209;11210;11211 7327 7327 1 EFGDLSENAEYK Unmodified 1400.6096 0.60958983 1184 Karp_00677 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 46.56 46.854 2 5.0901E-08 16988 20181213_JW_Orientia_Karp_1_1 220.82 135.46 473780000 204920000 0 135320000 0 42433000 48197000 7914700 35002000 1816 1184 1587 11212;11213;11214;11215;11216;11217;11218;11219 7328;7329;7330;7331;7332;7333;7334;7335 7328 8 EFGSTLSLSGNTKPEEPSEGATGEK Unmodified 2551.1926 0.19257098 1193 Karp_00798 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 1 2 1 45.596 45.947 3 7.8303E-31 15275 20181213_JW_Orientia_Karp_2_1 219.99 174.77 680920000 171390000 144810000 151240000 52281000 0 55824000 54231000 51145000 1817 1193 1588 11220;11221;11222;11223;11224;11225;11226;11227;11228;11229;11230 7336;7337;7338;7339;7340;7341;7342;7343 7340 8 EFGSTLSLSGNTKPEEPSEGATGEK Deamidation (NQ) 2552.1766 0.17658656 1193 Karp_00798 yes yes 0 1 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.556 48.857 3 2.9254E-06 15961 20181213_JW_Orientia_Karp_3_2 129.75 88.332 145050000 29780000 30962000 31335000 14241000 14265000 11726000 0 12742000 1818 1193 1588 11231;11232;11233;11234;11235;11236;11237 7344;7345;7346;7347;7348 7348 605 5 EFHTTGLAWSK Unmodified 1275.6248 0.62478638 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;Q01518;Q5T0R1;Q01518-2;Q5T0R9;B4DNY3;B4DNA3;Q5T0S3 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 42.616 42.854 3 0.032232 14380 20181213_JW_Orientia_Karp_1_2 43.604 2.6106 36387000 21452000 12565000 0 961570 1408500 0 0 0 1819 498 1589 11238;11239;11240;11241 7349 7349 1 EFKAELILYR Unmodified 1280.7129 0.71287311 753 B9EK44;Q9ULD8 KCNH3 Potassium voltage-gated channel subfamily H member 3 yes no 0 0 0 1 By MS/MS 1 31.845 32.496 3 0.0050103 8783 20181213_JW_Orientia_Karp_3_1 102.95 0 649650000 0 0 0 0 0 0 649650000 0 1820 753 1590 11242 7350 7350 1 EFLLIFR Unmodified 936.54329 0.54328858 12 A0A024QZ77;Q96C19;H0Y4Y4 EFHD2 EF-hand domain-containing protein D2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 71.477 71.515 2 0.023331 25945 20181213_JW_Orientia_Karp_3_1 98.133 7.0919 17805000 5642800 0 0 0 2739400 1475400 7946900 0 1821 12 1591 11243;11244;11245;11246 7351;7352;7353 7353 3 EFMEEVIQR Oxidation (M) 1195.5543 0.55432356 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 1 0 By MS/MS By MS/MS 1 1 42.005 42.005 2 0.00061692 14444 20181213_JW_Orientia_Karp_1_1 150.4 58.773 30725000 30725000 0 0 0 0 0 0 0 1822 1466;1549 1592 11247;11248 7354;7355 7354 1082 2 EFMEEVIQR Unmodified 1179.5594 0.55940893 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS 1 52.209 52.559 2 0.0048662 20499 20181213_JW_Orientia_Karp_1_2 147.29 90.742 0 0 0 0 0 0 0 0 0 1823 1466;1549 1592 11249 7356 7356 1 EFMGLSQILLR Oxidation (M) 1321.7064 0.70640752 1252 Karp_00931 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 1 1 1 67.071 67.286 2 1.5539E-19 29559 20181213_JW_Orientia_Karp_1_3 240.47 130.76 191180000 47042000 20118000 70428000 0 23632000 18259000 98508 11597000 1824 1252 1593 11250;11251;11252;11253;11254;11255;11256;11257;11258 7357;7358;7359;7360;7361;7362;7363;7364 7359 815 8 EFPGFLENQK Unmodified 1207.5873 0.58733824 1719 Q6FGE5;P60903;D3DV26 S100A10 Protein S100-A10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 1 1 55.511 55.866 2 5.9771E-06 20572 20181213_JW_Orientia_Karp_2_3 169.44 98.059 1443300000 329850000 310370000 380820000 114680000 159800000 141460000 1586400 4746100 1825 1719 1594 11259;11260;11261;11262;11263;11264;11265;11266;11267;11268;11269;11270 7365;7366;7367;7368;7369;7370;7371;7372;7373 7371 9 EFPGFLENQK Deamidation (NQ) 1208.5714 0.57135383 1719 Q6FGE5;P60903;D3DV26 S100A10 Protein S100-A10 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 2 58.619 58.92 2 1.1183E-05 22844 20181213_JW_Orientia_Karp_2_1 169.09 106.89 113730000 15678000 26051000 20000000 8613400 10147000 31540000 0 1704900 1826 1719 1594 11271;11272;11273;11274;11275;11276;11277;11278;11279;11280 7374;7375;7376;7377;7378;7379;7380;7381 7378 1133 8 EFPGLAGVK Unmodified 916.50182 0.5018177 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 1 1 50.378 50.637 1;2 0.030448 19186 20181213_JW_Orientia_Karp_1_2 76.774 21.988 180920000 30582000 47180000 29484000 41542000 6488700 24151000 1492400 0 1827 25 1595 11281;11282;11283;11284;11285;11286;11287;11288;11289;11290;11291 7382;7383;7384 7384 2 EFSGPSTPTGTLEFEGGEVSLEGGK Unmodified 2511.1653 0.16529359 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 64.77 64.903 2 0.0024808 28352 20181213_JW_Orientia_Karp_1_2 83.964 49.863 85496000 49730000 30212000 0 0 5553800 0 0 0 1828 1782 1596 11292;11293;11294 7385 7385 1 EFSIDVGYER Unmodified 1213.5615 0.56151742 201 A0A024RAI1;P61158;B4DXW1;B4DT29;Q59FV6;B4DTI0 ACTR3 Actin-related protein 3 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 54.823 55.098 2 0.04286 22150 20181213_JW_Orientia_Karp_1_2 71.349 41.095 22379000 3376900 8835700 9505400 660550 0 0 0 0 1829 201 1597 11295;11296;11297;11298 7386 7386 1 EFSPFGTITSAK Unmodified 1283.6398 0.63976774 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E7ERJ7;B4DQX0;H0YAR2;H0YB86;H0YAP2 PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 1 yes no 0 0 0 0 By MS/MS 1 57.738 57.989 2 0.017027 22139 20181213_JW_Orientia_Karp_2_3 103.26 53.837 0 0 0 0 0 0 0 0 0 1830 179 1598 11299 7387 7387 1 EFTATDLVTAHINQMDK Oxidation (M) 1948.92 0.9200417 1318 Karp_01280 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 52.727 53.004 2 0.00041446 20845 20181213_JW_Orientia_Karp_1_2 128.35 89.572 31339000 8190300 19793000 0 0 3164900 0 0 190610 1831 1318 1599 11300;11301;11302;11303 7388;7389 7389 874 2 EFTRPEEIIFLR Unmodified 1548.83 0.83002813 784 CON__ENSEMBL:ENSBTAP00000016046;Q8NBH6;P23142 FBLN1 Fibulin-1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 59.949 60.16 3 0.00090517 25404 20181213_JW_Orientia_Karp_1_2 140.78 52.95 30188000 6876900 6937300 11186000 0 2993800 2193200 0 0 + 1832 784 1600 11304;11305;11306;11307;11308 7390;7391;7392 7391 3 EFVEAVLELR Unmodified 1203.6499 0.6499385 1518 O75367-2;O75367-3;O75367;Q59FH0;B4DJC3 H2AFY Core histone macro-H2A.1;Histone H2A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 66.996 67.173 2 2.2675E-08 29986 20181213_JW_Orientia_Karp_1_1 209.6 81.92 47642000 11107000 8126000 17746000 0 5172100 1979200 0 3511000 1833 1518 1601 11309;11310;11311;11312;11313;11314 7393;7394;7395;7396;7397 7393 5 EFVEQLLTLK Unmodified 1218.686 0.68598966 1116 Karp_00304 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 68.319 68.509 2 2.2196E-08 30315 20181213_JW_Orientia_Karp_1_3 187.5 78.394 49947000 29331000 7937800 5177000 0 3670800 0 3831200 0 1834 1116 1602 11315;11316;11317;11318;11319;11320 7398;7399;7400;7401;7402;7403;7404;7405 7402 8 EGAAHAFAQYNLDQFTPVK Unmodified 2106.0171 0.017053633 295 C9JUG7;F8W9N7;Q53GE2;Q53GC7;A4D0V4;P47755-2;P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 0 0 0 0 By MS/MS 1 56.631 56.981 2 0.0015902 23380 20181213_JW_Orientia_Karp_1_2 121.18 84.17 0 0 0 0 0 0 0 0 0 1835 295 1603 11321 7406 7406 1 EGALCEENMR Oxidation (M) 1223.4911 0.49107137 1593 P13639;Q8TA90;B4DPU3 EEF2 Elongation factor 2 yes no 0 0 1 0 By MS/MS 1 25.388 25.388 2 0.022838 6341 20181213_JW_Orientia_Karp_1_1 93.598 61.663 0 0 0 0 0 0 0 0 0 1836 1593 1604 11322 7407 7407 1212 1 EGALDLSGLR Unmodified 1029.5455 0.54547343 1818 Q6IB91;Q16822;H0YML5;B4DW73 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 53.631 53.831 2 0.040537 21317 20181213_JW_Orientia_Karp_1_2 72.243 6.7779 21110000 8585300 5541800 5799900 0 1182700 0 0 0 1837 1818 1605 11323;11324;11325;11326 7408 7408 1 EGDVLTLLESER Unmodified 1359.6882 0.6881745 448 B2R4R9;P62857 RPS28 40S ribosomal protein S28 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 66.269 66.476 2 1.9354E-30 23296 20181213_JW_Orientia_Karp_3_1 242.35 61.687 346210000 54106000 58630000 51507000 14141000 59244000 56956000 12854000 38772000 1838 448 1606 11327;11328;11329;11330;11331;11332;11333;11334 7409;7410;7411;7412;7413;7414;7415;7416;7417;7418;7419 7417 11 EGEEAGPGDPLLEAVPK Unmodified 1706.8363 0.8362953 146 A0A024R7B7;Q16543;A1L0W4;Q6FG59;K7EL68 CDC37;MBD5 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 60.894 61.154 2 2.8635E-05 26326 20181213_JW_Orientia_Karp_1_1 147.96 89.262 94844000 41438000 20076000 16037000 0 7520200 4602000 0 5170500 1839 146 1607 11335;11336;11337;11338;11339;11340 7420;7421 7420 2 EGEIIDLGVK Unmodified 1071.5812 0.58119023 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.466 55.733 2 8.3679E-06 22548 20181213_JW_Orientia_Karp_1_2 164.68 76.654 71584000 9660600 24368000 20188000 3964700 5510600 7891600 0 0 1840 1245 1608 11341;11342;11343;11344;11345;11346 7422;7423;7424;7425;7426;7427 7423 6 EGESHAENETK Unmodified 1229.516 0.51602379 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS 1 1 0.89582 0.89582 2 0.01208 72 20181213_JW_Orientia_Karp_1_2 112.36 56.827 547270 547270 0 0 0 0 0 0 0 1841 345 1609 11347;11348 7428;7429 7429 2 EGFIHSFLVHEVR Unmodified 1568.81 0.80996139 1228 Karp_00895 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 2 49.181 49.553 2;3 3.0076E-17 18522 20181213_JW_Orientia_Karp_1_2 217.02 151.86 186240000 23508000 64563000 26594000 37063000 4921200 13570000 122760 15897000 1842 1228 1610 11349;11350;11351;11352;11353;11354;11355;11356;11357;11358 7430;7431;7432;7433;7434;7435;7436 7431 7 EGGLGPLNIPLLADVTR Unmodified 1733.9676 0.96758424 321 A6NIW5;B4DF70;V9HW12;P32119 PRDX2;HEL-S-2a Peroxiredoxin-2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 75.438 75.458 2 1.3411E-11 30474 20181213_JW_Orientia_Karp_2_2 183.28 120.64 162560000 52352000 30476000 40363000 5507100 6091500 6141800 14323000 7303300 1843 321 1611 11359;11360;11361;11362;11363;11364;11365;11366 7437;7438;7439;7440;7441;7442;7443 7440 7 EGGNQNKVKSMANQLLAK Oxidation (M);Deamidation (NQ) 1945.9891 0.98912432 664 B4DYS3;O94851-2;O94851-5;O94851-6;O94851-4;O94851-3;O94851 MICAL2 Protein-methionine sulfoxide oxidase MICAL2 yes no 0 1 1 2 By MS/MS By matching 1 1 26.475 27.156 4 0.040779 6641 20181213_JW_Orientia_Karp_3_1 45.14 18.775 1910900000 0 0 0 0 0 0 71369000 1839600000 1844 664 1612 11367;11368 7444 7444 0 EGGPSQIGDALGFAVR Unmodified 1572.7896 0.78961988 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 63.168 63.469 2 1.2556E-37 27728 20181213_JW_Orientia_Karp_1_1 246.63 184.87 148370000 53146000 49297000 33512000 1637900 0 4942000 511340 5321400 1845 1466;1549 1613 11369;11370;11371;11372;11373;11374;11375;11376 7445;7446;7447;7448;7449;7450;7451;7452 7445 8 EGGSYKPYAFGHEAK Unmodified 1639.7631 0.76307078 1360 Karp_01811 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 28.922 29.238 3 0.01788 7464 20181213_JW_Orientia_Karp_1_3 87.363 45.719 101360000 23942000 22718000 13590000 5418700 0 3178800 32517000 0 1846 1360 1614 11377;11378;11379;11380;11381;11382 7453 7453 1 EGILNDDIYCPPETAVLLASYAVQSK Unmodified 2865.4106 0.41062602 1630 V9HWC0;P26038;Q6PJT4 HEL70;MSN Moesin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 75.753 75.794 3 0.00072149 30982 20181213_JW_Orientia_Karp_2_1 75.177 54.699 30327000 12235000 0 7132100 2700500 0 0 5719000 2540800 1847 1630 1615 11383;11384;11385;11386;11387 7454;7455;7456 7455 3 EGIPALDNFLDK Unmodified 1330.6769 0.67688153 1593 P13639;Q8TA90;B4DPU3 EEF2 Elongation factor 2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 69.392 69.576 2 0.033212 28097 20181213_JW_Orientia_Karp_2_1 77.744 23.993 45425000 0 0 4607400 4099000 11718000 6791200 13652000 4556900 1848 1593 1616 11388;11389;11390;11391;11392;11393 7457 7457 1 EGIPALDNFLDKL Unmodified 1443.7609 0.76094551 1593 P13639;Q8TA90;B4DPU3 EEF2 Elongation factor 2 yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 75.354 75.381 2 0.0016372 35261 20181213_JW_Orientia_Karp_1_2 171.67 123.77 49863000 0 14632000 29366000 0 0 3400600 0 2464900 1849 1593 1617 11394;11395;11396;11397 7458 7458 1 EGLCEGTADVDK Unmodified 1292.5554 0.55544577 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 34.512 34.885 2 0.010113 10686 20181213_JW_Orientia_Karp_1_1 97.597 52.733 17604000 6491600 1524300 4863700 661030 1044700 0 1597600 1421200 1850 1251 1618 11398;11399;11400;11401;11402;11403;11404 7459;7460 7459 2 EGLELPEDEEEK Unmodified 1415.6304 0.63038485 1057;251 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q96HX7;Q86U12;Q58FG0;Q58FF6;B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF7 EL52;HSP90AA1;HSP90AA5P;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 47.298 47.614 2 0.0030565 17483 20181213_JW_Orientia_Karp_1_1 115.91 52.839 60703000 22676000 20474000 12381000 2523300 2547600 0 100560 0 1851 1057;251 1619 11405;11406;11407;11408;11409;11410 7461;7462;7463 7461 3 EGLLLWCQR Unmodified 1173.5965 0.59646314 1509;133 O43707;B4E337;B4DSX0;B7Z2N5;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;Q86TX4;G3V2N5;B4DRP5;P35609-2;P35609;G3V2W4;B2R8Y4;Q08043;B7Z4V1;B4DZQ2;G3V2X9 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 2 1 61.467 61.654 2 0.00058426 26802 20181213_JW_Orientia_Karp_1_1 155 77.714 14543000 5030700 2897300 4999400 0 0 1615600 0 0 1852 1509;133 1620 11411;11412;11413;11414;11415 7464;7465 7464 2 EGLSCVLSLK Unmodified 1104.5849 0.5848954 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 56.141 56.461 2 0.0054824 22709 20181213_JW_Orientia_Karp_1_3 101.65 35.573 65080000 0 15952000 16526000 10675000 11213000 10714000 0 0 1853 1262 1621 11416;11417;11418;11419;11420;11421 7466;7467;7468;7469;7470 7468 5 EGMLQSDQTGLSRK Oxidation (M);Deamidation (NQ) 1565.7355 0.7355354 1522 O75417-2;O75417 POLQ DNA polymerase theta yes no 0 1 1 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 49.47 49.828 2 0.030899 17383 20181213_JW_Orientia_Karp_2_2 107.55 7.309 336590000 43894000 59011000 72169000 78449000 61883000 0 195820 20988000 1854 1522 1622 11422;11423;11424;11425;11426;11427;11428 7471 7471 1911 1 EGMNIVEAMER Oxidation (M) 1293.5693 0.56932169 356;1888 V9HWF5;A8K486;P62937;B2RE56;B4DM82;P62937-2;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 42.484 42.734 2 0.00036006 14831 20181213_JW_Orientia_Karp_1_1 144.17 83.343 44904000 26218000 0 0 4600300 2936000 4252100 6898400 0 1855 356;1888 1623 11429;11430;11431;11432;11433;11434;11435;11436 7472;7473;7474;7475;7476;7477;7478;7479 7472 245;246 7 EGMNIVEAMER Unmodified 1277.5744 0.57440707 356;1888 V9HWF5;A8K486;P62937;B2RE56;B4DM82;P62937-2;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 55.28 55.606 2 0.0012056 22448 20181213_JW_Orientia_Karp_1_2 126.39 65.559 77279000 23133000 15132000 16723000 11414000 10567000 0 0 310560 1856 356;1888 1623 11437;11438;11439;11440;11441;11442;11443 7480;7481;7482;7483 7481 4 EGMNIVEAMER 2 Oxidation (M) 1309.5642 0.56423631 356;1888 V9HWF5;A8K486;P62937;B2RE56;B4DM82;P62937-2;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 0 2 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.361 33.695 2 0.00081541 8396 20181213_JW_Orientia_Karp_2_2 125.74 84.855 40281000 4788800 5146800 6823000 11894000 5033400 0 6594700 0 1857 356;1888 1623 11444;11445;11446;11447;11448;11449;11450 7484;7485;7486;7487 7485 245;246 4 EGNFSFGIK Unmodified 997.4869 0.48689592 1230 Karp_00897 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.394 50.72 2 0.011529 17863 20181213_JW_Orientia_Karp_2_1 91.069 44.643 56969000 14493000 13987000 6448600 14625000 0 6771700 0 644510 1858 1230 1624 11451;11452;11453;11454;11455;11456;11457 7488;7489;7490;7491;7492;7493 7491 6 EGNILEYQNNLWIVSK Unmodified 1918.9789 0.97887721 1436 Karp_02394 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 69.609 69.76 2 1.5499E-19 31515 20181213_JW_Orientia_Karp_1_2 212.1 170.72 59699000 19903000 11169000 0 0 5300400 2367500 11507000 9452400 1859 1436 1625 11458;11459;11460;11461;11462;11463 7494;7495;7496;7497;7498;7499 7495 6 EGPFGWYIQAGEDSTNK Unmodified 1897.8483 0.84825697 1109 Karp_00291 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 64.665 64.874 2 3.2393E-09 28025 20181213_JW_Orientia_Karp_1_3 177.38 120.44 50348000 22069000 10375000 7748600 2030600 6058100 0 0 2066700 1860 1109 1626 11464;11465;11466;11467;11468;11469 7500;7501;7502;7503 7502 4 EGPYDVVVLPGGNLGAQNLSESAAVK Unmodified 2583.318 0.31804626 1956 V9HWC2;Q99497;K7EN27 HEL-S-67p;PARK7 Protein deglycase DJ-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 69.737 69.854 2;3 3.4043E-05 31198 20181213_JW_Orientia_Karp_1_3 121.5 95.259 84742000 21690000 6052800 6405600 0 14008000 9561600 27024000 0 1861 1956 1627 11470;11471;11472;11473;11474;11475;11476 7504;7505;7506;7507;7508 7505 5 EGPYSISVLYGDEEVPR Unmodified 1908.9105 0.91052288 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 64.523 64.693 2 4.8724E-23 28443 20181213_JW_Orientia_Karp_1_1 213.99 138.2 280560000 105080000 52718000 102320000 7068900 0 13372000 0 0 1862 1615 1628 11477;11478;11479;11480;11481 7509;7510;7511;7512;7513;7514 7509 4 EGQGQSCCEFISK Unmodified 1528.6286 0.62862749 1162 Karp_00605 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 35.501 35.868 2 0.0085837 10435 20181213_JW_Orientia_Karp_3_1 110.08 64.709 7822000 0 0 5116300 0 0 801460 1904200 0 1863 1162 1629 11482;11483;11484 7515 7515 1 EGSAAQCGIAPGDVITK Unmodified 1672.809 0.80903469 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 46.532 46.889 2 2.0105E-83 15752 20181213_JW_Orientia_Karp_2_1 293.8 190.49 4142300000 998690000 967770000 660380000 276660000 247730000 329960000 167670000 493420000 1864 1107 1630 11485;11486;11487;11488;11489;11490;11491;11492;11493 7516;7517;7518;7519;7520;7521;7522;7523;7524;7525 7519 10 EGTCPEAPTDECK Unmodified 1492.581 0.58100859 578 B4DI57;Q53H26;Q06AH7;P02787;B4E1B2;B4DHZ6 TF Serotransferrin yes no 0 0 0 0 By MS/MS 1 29.112 29.112 2 0.0096807 7946 20181213_JW_Orientia_Karp_1_1 99.568 77.229 2579300 2579300 0 0 0 0 0 0 0 1865 578 1631 11494 7526 7526 1 EHALLAYTLGVK Unmodified 1313.7343 0.73433683 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;A8K9C4;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q9NZS6;Q53HR1;Q53G89;Q9H2I7;Q16577;Q05639;A9X7H1;Q59GP5 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 2 1 2 1 50.52 50.835 2;3 0.00061319 19780 20181213_JW_Orientia_Karp_1_1 146.11 105.22 110640000 23410000 35042000 18067000 13317000 2764900 7763700 10272000 0 1866 1746 1632 11495;11496;11497;11498;11499;11500;11501;11502;11503;11504 7527;7528;7529;7530;7531 7527 5 EHDLVYLIR Unmodified 1156.6241 0.6240581 1060 Karp_00004 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 1 2 2 49.646 49.956 2;3 7.7559E-06 16648 20181213_JW_Orientia_Karp_3_2 198.07 99.077 252070000 70325000 45582000 36913000 52541000 10973000 28707000 0 7030100 1867 1060 1633 11505;11506;11507;11508;11509;11510;11511;11512;11513;11514;11515;11516;11517 7532;7533;7534;7535;7536;7537;7538;7539;7540 7540 9 EHFAQFGHVR Unmodified 1226.5945 0.59448931 954 H0YJ40;G3V4X6;G3V2S9;Q9GZT3-2;Q9GZT3;H0YJ07;H0YJU7;H0YJW7 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 27.93 28.243 3 0.024648 7221 20181213_JW_Orientia_Karp_1_2 56.632 33.946 18931000 6966000 8615600 0 0 0 1092500 2257100 0 1868 954 1634 11518;11519;11520;11521 7541;7542 7541 2 EHHFGSSGMTLHER Oxidation (M) 1639.7161 0.71613736 2009 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 19.298 19.666 4 0.031541 3595 20181213_JW_Orientia_Karp_3_1 60.364 35.428 10651000 0 3520100 2913900 1418300 0 1876200 747940 174370 1869 2009 1635 11522;11523;11524;11525;11526;11527 7543 7543 1 EHLLSYLEK Unmodified 1130.5972 0.59717465 1845 Q5HYL6;Q9NYL9 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 43.632 44.002 2 0.036274 14327 20181213_JW_Orientia_Karp_2_1 84.743 33.55 4939100 0 0 0 3046600 1789900 0 0 102610 1870 1845 1636 11528;11529;11530 7544 7544 1 EHLVQTITNDIVK Deamidation (NQ) 1509.8039 0.80387296 1188 Karp_00703 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.506 45.769 2 0.0013302 16487 20181213_JW_Orientia_Karp_1_1 147.58 96.785 13996000 4947600 6969400 0 1275700 0 803160 0 0 1871 1188 1637 11531;11532;11533;11534 7545;7546;7547 7545 596 3 EHLVQTITNDIVK Unmodified 1508.8199 0.81985737 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 49.048 49.442 2 9.6906E-25 17131 20181213_JW_Orientia_Karp_2_2 229.68 163.11 52070000 0 25103000 8202100 4820900 4833600 4450700 207390 4451600 1872 1188 1637 11535;11536;11537;11538;11539;11540;11541 7548;7549;7550;7551;7552;7553 7551 6 EHPSIALELEQQIR Unmodified 1661.8737 0.87368386 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 2 52.988 53.313 2;3 3.8413E-12 19220 20181213_JW_Orientia_Karp_2_2 201.38 72.381 1276400000 404070000 119750000 205960000 154010000 166730000 216010000 8180200 1674900 1873 1245 1638 11542;11543;11544;11545;11546;11547;11548;11549;11550;11551;11552;11553;11554;11555;11556 7554;7555;7556;7557;7558;7559;7560 7558 7 EHPWEVMPDLYFYR Oxidation (M) 1896.8505 0.85050558 71 C9J9K3;A0A024R2P0;P08865;Q96RS2;A6NE09 RPSA;RPSAP58 40S ribosomal protein SA yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 62.742 62.943 3 0.010468 24346 20181213_JW_Orientia_Karp_2_2 92.856 46.864 8683900 0 0 0 0 5301100 3382700 0 0 1874 71 1639 11557;11558;11559 7561;7562;7563 7562 76 3 EHTLDDVLSIINK Unmodified 1495.7882 0.7882229 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 63.978 64.167 2;3 1.117E-24 27992 20181213_JW_Orientia_Karp_1_2 227.94 172.48 354620000 34277000 137290000 0 0 98567000 83682000 0 799920 1875 1245 1640 11560;11561;11562;11563;11564;11565;11566;11567;11568;11569 7564;7565;7566;7567;7568;7569 7565 6 EHVEEISELFYDAK Unmodified 1707.7992 0.79918151 699 H7C4G5;B5BUB1;Q9Y265 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 57.214 57.413 3 0.0011785 23414 20181213_JW_Orientia_Karp_1_3 164.13 127.18 18584000 8640600 3461900 3871800 0 0 2609900 0 0 1876 699 1641 11570;11571;11572;11573 7570 7570 1 EHVLLAK Unmodified 808.48069 0.48068833 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 24.715 25.06 2 0.012178 5590 20181213_JW_Orientia_Karp_3_1 117.7 33.34 1018400000 138690000 243560000 103970000 107610000 97771000 78813000 154200000 93756000 1877 1176;1244 1642 11574;11575;11576;11577;11578;11579;11580;11581 7571;7572;7573;7574 7574 4 EIAAFSLATTETWR Unmodified 1594.7991 0.79912193 1302 Karp_01239 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 66.574 66.781 2 4.4459E-88 29802 20181213_JW_Orientia_Karp_1_1 306.48 231.94 172030000 52254000 23444000 28859000 14626000 31756000 11735000 1798300 7562100 1878 1302 1643 11582;11583;11584;11585;11586;11587;11588;11589 7575;7576;7577;7578;7579;7580;7581;7582;7583;7584 7576 10 EIAALATHPVPDLVTK Unmodified 1673.9352 0.93522148 1336 Karp_01409 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 54.293 54.56 3 0.03311 21805 20181213_JW_Orientia_Karp_1_2 51.004 18.729 223940000 42753000 62249000 55531000 16362000 19799000 27242000 0 0 1879 1336 1644 11590;11591;11592;11593;11594;11595 7585;7586 7585 2 EIADLGEALATAVIPQWQK Unmodified 2052.0892 0.089155943 628 P49588;B4DR45 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 75.481 75.51 2 0.00018514 35332 20181213_JW_Orientia_Karp_1_2 129.76 67.423 42221000 13366000 10183000 12046000 1312500 0 0 5314100 0 1880 628 1645 11596;11597;11598;11599;11600 7587;7588;7589 7588 3 EIAEAYLGK Unmodified 992.51786 0.51786169 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65;A4D111 HEL-S-72p;HSPA8;LOC401308 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 43.056 43.398 2 0.0037612 14086 20181213_JW_Orientia_Karp_3_1 110.12 27.879 115070000 30734000 45342000 20250000 0 0 0 18185000 558290 1881 1586 1646 11601;11602;11603;11604;11605 7590;7591 7591 2 EIAQDFK Unmodified 849.42323 0.42323303 1749 P68431;Q71DI3;Q16695 HIST1H3A;HIST2H3A;HIST3H3 Histone H3.1;Histone H3.2;Histone H3.1t no no 0 0 0 0 By MS/MS 1 33.25 33.86 2 0.029889 8767 20181213_JW_Orientia_Karp_3_2 102.77 3.3984 0 0 0 0 0 0 0 0 0 1882 1749 1647 11606 7592 7592 1 EIATAYVSNTEAK Unmodified 1395.6882 0.6881745 1360 Karp_01811 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 39.505 39.837 2 0.0014648 13300 20181213_JW_Orientia_Karp_1_1 140.63 71.781 253970000 57279000 90314000 45188000 9051000 7459400 5553700 29987000 9135400 1883 1360 1648 11607;11608;11609;11610;11611;11612;11613;11614 7593 7593 1 EIDIAMEALR Unmodified 1159.5907 0.59070906 1315 Karp_01271 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 60.129 60.339 2 1.2542E-24 25854 20181213_JW_Orientia_Karp_1_1 241.96 122.78 152790000 64258000 13846000 42479000 0 14816000 17392000 0 0 1884 1315 1649 11615;11616;11617;11618;11619;11620;11621;11622 7594;7595;7596;7597;7598;7599;7600;7601 7594 8 EIDIAMEALR Oxidation (M) 1175.5856 0.58562368 1315 Karp_01271 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 52.221 52.554 2 0.0020218 19081 20181213_JW_Orientia_Karp_2_3 158.87 73.958 0 0 0 0 0 0 0 0 0 1885 1315 1649 11623;11624;11625 7602;7603;7604 7604 865 3 EIDISNNQQLHEK Unmodified 1566.7638 0.76379906 1402 Karp_02202 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 33.367 33.709 3 0.036832 10206 20181213_JW_Orientia_Karp_1_1 50.207 12.186 388680000 127210000 140200000 94305000 19004000 0 0 0 7957900 1886 1402 1650 11626;11627;11628;11629;11630 7605;7606 7605 2 EIEELQSQAQALSQEGK Unmodified 1886.9222 0.92215019 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 50.104 50.431 2 8.9921E-07 17016 20181213_JW_Orientia_Karp_3_1 206.67 144.14 62670000 16905000 17414000 18933000 0 4238100 0 4542400 638100 1887 506 1651 11631;11632;11633;11634;11635;11636 7607 7607 1 EIEIDIEPTDK Unmodified 1300.6398 0.63982732 900 F8VSA6;E9PS38;S4R3E9;E9PL57;Q15843 NEDD8;NEDD8-MDP1 NEDD8 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 54.608 54.918 2 1.5105E-09 20381 20181213_JW_Orientia_Karp_2_3 205.83 106.39 164250000 40975000 0 60350000 19313000 18838000 23339000 0 1435300 1888 900 1652 11637;11638;11639;11640;11641;11642 7608;7609;7610;7611;7612 7612 5 EIEQEAAVELSQLR Unmodified 1613.8261 0.82606496 1678 P47985 UQCRFS1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 58.576 58.826 2;3 0.00092647 24296 20181213_JW_Orientia_Karp_1_3 145.52 53.33 60700000 26238000 6546400 25269000 1802900 0 0 844020 0 1889 1678 1653 11643;11644;11645;11646;11647;11648;11649 7613;7614 7614 2 EIESSPQYR Unmodified 1107.5197 0.51965261 1923 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;A0A024QZC0;A0A024QZB7;A0A024QZ91;H3BUF6;Q8WWM7-7;H3BSK9 ATXN2L Ataxin-2-like protein yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 29.251 29.538 2 0.011131 8136 20181213_JW_Orientia_Karp_1_1 91.853 37.886 2853100 1353600 0 0 0 0 319020 0 1180500 1890 1923 1654 11650;11651;11652 7615 7615 1 EIETYHNLLEGGQEDFESSGAGK Unmodified 2509.1245 0.12449141 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 1 3 1 3 2 53.809 54.172 2;3 5.3726E-69 18875 20181213_JW_Orientia_Karp_3_1 309.09 247.53 3037600000 588940000 350950000 868370000 457800000 440420000 304730000 18957000 7471200 + 1891 1653 1655 11653;11654;11655;11656;11657;11658;11659;11660;11661;11662;11663;11664;11665;11666;11667;11668;11669 7616;7617;7618;7619;7620;7621;7622;7623;7624;7625;7626;7627;7628;7629;7630;7631;7632;7633;7634;7635;7636;7637 7635 22 EIETYHNLLEGGQEDFESSGAGK Deamidation (NQ) 2510.1085 0.10850699 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 56.069 56.521 3 0.01004 21308 20181213_JW_Orientia_Karp_2_3 79.143 47.376 39795000 0 0 15581000 14865000 0 8968800 268340 111510 + 1892 1653 1655 11670;11671;11672;11673;11674 7638 7638 1098 1 EIFFNILVPGAEEAQKERQR 3 Deamidation (NQ) 2376.1961 0.19614021 688 Q9BR60;B4E321;B7Z8E7;Q13438-8;Q13438-6;Q13438-5;Q13438-3;Q13438-2;Q13438-7;Q13438-4;Q13438 OS9 Protein OS-9 yes no 0 3 0 2 By MS/MS 1 57.235 57.846 3 0.019352 20377 20181213_JW_Orientia_Karp_3_2 67.418 10.699 0 0 0 0 0 0 0 0 0 1893 688 1656 11675 7639 7639 234;1581;1582 1 EIFMQVEDER Unmodified 1294.5864 0.58635197 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 51.023 51.297 2 0.0033837 19461 20181213_JW_Orientia_Karp_1_3 108.43 47.843 25263000 0 12524000 12739000 0 0 0 0 0 1894 944 1657 11676;11677 7640;7641 7641 2 EIFNFVLK Unmodified 1008.5644 0.56441796 878 E7EUY0;P78527-2;P78527;B4DL41 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 65.727 65.843 2 0.0078735 29317 20181213_JW_Orientia_Karp_1_1 110.63 12.215 6263900 3946900 909590 1407400 0 0 0 0 0 1895 878 1658 11678;11679;11680 7642;7643;7644 7643 3 EIFTAQAR Unmodified 934.48723 0.48723027 1346 Karp_01522 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 36.368 36.726 2 0.0034571 10742 20181213_JW_Orientia_Karp_2_3 153.78 46.349 1060300000 286240000 243410000 251990000 96803000 55694000 19527000 97220000 9378600 1896 1346 1659 11681;11682;11683;11684;11685;11686;11687;11688 7645;7646;7647;7648;7649;7650;7651;7652 7650 8 EIGGTDIAELIR Unmodified 1285.6878 0.68778057 1330 Karp_01368 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.554 63.792 2 4.2561E-11 25221 20181213_JW_Orientia_Karp_2_1 198.25 109.88 92837000 26267000 17465000 29027000 1293800 8445100 7116400 47332 3174800 1897 1330 1660 11689;11690;11691;11692;11693;11694;11695;11696 7653;7654;7655;7656;7657;7658;7659 7656 7 EIGNIISDAMK Unmodified 1189.6013 0.60127375 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;Q53SE2;E7ESH4;B7Z532;E7EXB4 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 56.792 56.992 2 0.00092761 23057 20181213_JW_Orientia_Karp_1_3 154.84 87.674 111790000 42711000 33421000 28632000 0 0 7027800 0 0 1898 81 1661 11697;11698;11699;11700;11701 7660;7661;7662;7663;7664 7662 5 EIGNIISDAMK Oxidation (M) 1205.5962 0.59618837 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;Q53SE2;E7ESH4;B7Z532;E7EXB4 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.279 47.674 2 1.8813E-05 16165 20181213_JW_Orientia_Karp_2_1 167.93 105.39 122550000 0 45473000 22219000 13159000 8839000 11245000 574740 21044000 1899 81 1661 11702;11703;11704;11705;11706;11707;11708;11709 7665;7666;7667;7668;7669;7670;7671 7667 90 7 EIIAISTK Unmodified 873.51713 0.51713341 1427 Karp_02373 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 43.497 43.687 2 0.02667 14919 20181213_JW_Orientia_Karp_1_2 84.498 46.365 33273000 10793000 13138000 8407000 0 709400 225370 0 0 1900 1427 1662 11710;11711;11712;11713;11714 7672 7672 1 EIIDLVLDR Unmodified 1084.6128 0.61282471 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;F8VVB9;F8VRZ4;F8VS66;Q71U36-2;Q71U36;Q53GA7;F5H5D3;Q9BQE3;B4DQK4;B7Z1K5;Q8N532;F8VQQ4 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.677 67.807 2 0.00021941 27048 20181213_JW_Orientia_Karp_2_3 181.55 66.055 179420000 70515000 21547000 41835000 0 31699000 13825000 0 0 1901 512;1887 1663 11715;11716;11717;11718;11719 7673;7674;7675;7676;7677;7678 7678 6 EIIGATNPCDAK Unmodified 1287.6129 0.61290107 1397 Karp_02170 yes yes 0 0 0 0 By matching By MS/MS 1 1 38.447 38.721 2 0.025506 12142 20181213_JW_Orientia_Karp_1_3 82.494 19.31 27506000 0 18495000 9011100 0 0 0 0 0 1902 1397 1664 11720;11721 7679 7679 1 EIIINTMPSVK Unmodified 1243.6846 0.68460945 1305 Karp_01246 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.617 54.944 2 0.0099075 22490 20181213_JW_Orientia_Karp_1_1 96.113 42.786 35403000 5692500 12806000 14054000 1415300 1398200 0 0 36971 1903 1305 1665 11722;11723;11724;11725;11726;11727 7680;7681 7680 2 EIILTVLSNK Unmodified 1128.6754 0.67542497 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.273 60.523 2 2.2061E-18 25376 20181213_JW_Orientia_Karp_1_3 239.6 153.73 151400000 75694000 30654000 20002000 4376700 10910000 9758700 0 0 1904 1449 1666 11728;11729;11730;11731;11732;11733 7682;7683;7684;7685;7686;7687 7684 6 EIISHDTR Unmodified 969.48796 0.48795855 102 A0A024R4X0;P00387-2;P00387;P00387-3;B1AHF3 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 20.276 20.696 2 0.038825 4089 20181213_JW_Orientia_Karp_1_2 77.674 3.5468 1235300 0 573130 323740 0 0 0 0 338460 1905 102 1667 11734;11735;11736 7688 7688 1 EIISLSEQLK Unmodified 1158.6496 0.64960415 1289 Karp_01161 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 53.427 53.777 2 0.00233 19495 20181213_JW_Orientia_Karp_2_2 113.71 31.254 37435000 0 0 0 14873000 6704700 15857000 0 0 1906 1289 1668 11737;11738;11739 7689;7690;7691 7690 3 EILDAFDK Unmodified 949.47566 0.47566253 22 Q53FJ5;A0A024QZQ2;C9JIZ6;Q59EN5;B1AVU8;P07602;P07602-2;P07602-3;B4DEK5;B4DRB7 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 53.67 53.937 2 0.0047583 19599 20181213_JW_Orientia_Karp_2_1 126.28 6.7211 473540000 45206000 80507000 59972000 76076000 73032000 138750000 0 0 1907 22 1669 11740;11741;11742;11743;11744;11745 7692;7693;7694;7695;7696 7694 5 EILGTAQSVGCNVDGR Unmodified 1674.7995 0.79953264 1647 P30050;Q59FI9;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.135 46.455 2 4.2294E-38 16471 20181213_JW_Orientia_Karp_1_2 253.06 210.63 84491000 14766000 17762000 21489000 8484300 2155100 5783900 5723400 8327100 1908 1647 1670 11746;11747;11748;11749;11750;11751;11752;11753 7697;7698;7699;7700;7701;7702;7703 7698 7 EILLALNHK Unmodified 1049.6233 0.62332982 1416 Karp_02253 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.188 43.548 2 0.036335 14723 20181213_JW_Orientia_Karp_1_3 74.127 7.3281 39628000 11606000 15597000 5896300 2358400 0 0 3520400 650190 1909 1416 1671 11754;11755;11756;11757;11758;11759 7704 7704 1 EILVGDVGQTVDDPYATFVK Unmodified 2165.0892 0.089215523 1625 V9HWI5;P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;B4E112;E9PLJ3;E9PS23 HEL-S-15;CFL1 Cofilin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 2 3 2 1 71.195 71.302 2;3 5.1017E-91 32448 20181213_JW_Orientia_Karp_1_2 308.03 257.56 3005400000 461360000 489870000 527480000 172510000 435600000 304940000 612780000 848580 1910 1625 1672 11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776 7705;7706;7707;7708;7709;7710;7711;7712;7713;7714;7715 7708 11 EINLAPDSSSVVVSGLMVATK Oxidation (M) 2132.1035 0.10348538 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.885 68.127 2 1.1304E-05 30316 20181213_JW_Orientia_Karp_1_2 142.4 108.62 38794000 11245000 9906000 12208000 0 0 0 3276100 2159400 1911 85 1673 11777;11778;11779;11780;11781 7716;7717;7718;7719;7720 7717 94 5 EINLAPDSSSVVVSGLMVATK Unmodified 2116.1086 0.10857076 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 72.282 72.357 2 7.5419E-12 33274 20181213_JW_Orientia_Karp_1_2 172.56 129.93 25436000 9758000 15678000 0 0 0 0 0 0 1912 85 1673 11782;11783 7721;7722 7722 2 EINLSIPLVVR Unmodified 1251.7551 0.75507227 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 70.804 70.904 2 3.9892E-13 32408 20181213_JW_Orientia_Karp_1_1 245.5 202.64 209720000 73081000 43151000 23005000 0 15125000 10744000 44616000 0 1913 1121 1674 11784;11785;11786;11787;11788;11789;11790;11791 7723;7724;7725;7726;7727;7728;7729;7730 7723 8 EINQAQAYR Unmodified 1091.536 0.53597137 1105 Karp_00283 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 27.273 27.498 2 0.00024378 6829 20181213_JW_Orientia_Karp_1_3 176.09 105.56 108600000 24014000 50378000 25221000 8990900 0 0 0 0 1914 1105 1675 11792;11793;11794;11795 7731 7731 1 EIQELTDK Unmodified 974.49204 0.49204087 1456 Karp_02593 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 33.209 33.484 2 0.0042232 10014 20181213_JW_Orientia_Karp_1_1 134.81 19.352 30314000 24471000 0 0 5843400 0 0 0 0 1915 1456 1676 11796;11797 7732;7733 7732 2 EIQEPLESVEVNQETFR Unmodified 2045.9906 0.99056411 839 D3DVC4;P48681 NES Nestin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 59.575 59.773 2 0.013811 24946 20181213_JW_Orientia_Karp_1_3 88.507 35.815 12183000 0 0 12183000 0 0 0 0 0 1916 839 1677 11798;11799 7734;7735 7734 2 EIQTAVR Unmodified 815.45012 0.45011648 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;Q96A08;P23527;P33778;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BA;HIST1H2BO;HIST1H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 26.265 26.636 2 0.011643 6053 20181213_JW_Orientia_Karp_2_3 120.49 36.464 5132700000 568010000 2640400000 1387800000 83600000 61826000 108650000 282200000 138250 1917 449;1624;1817 1678 11800;11801;11802;11803;11804;11805;11806;11807 7736;7737;7738;7739 7739 4 EIQTPENASDPNWSNEYE Unmodified 2121.8763 0.87632221 1065 Karp_00013 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.005 59.292 2 1.3781E-31 22545 20181213_JW_Orientia_Karp_2_2 261.17 234.45 53063000 15586000 8185700 17368000 3222000 3095600 4575800 0 1030500 1918 1065 1679 11808;11809;11810;11811;11812;11813;11814 7740;7741;7742;7743;7744;7745;7746 7744 7 EISLWFKPEELVDYK Unmodified 1894.9717 0.97166657 1620 Q6FHN3;Q32Q12;P22392;P22392-2;F6XY72 NME2;NME1-NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 70.228 70.372 3 0.029599 32101 20181213_JW_Orientia_Karp_1_1 78.529 51.88 55535000 13794000 3090500 2191500 0 11105000 7924100 13390000 4040000 1919 1620 1680 11815;11816;11817;11818;11819;11820;11821 7747 7747 1 EISNEDLEQAK Unmodified 1274.599 0.59902514 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS 1 34.378 34.378 2 0.017248 10498 20181213_JW_Orientia_Karp_1_1 103.26 33.98 0 0 0 0 0 0 0 0 0 1920 1458 1681 11822 7748 7748 1 EISQATSPILK Unmodified 1185.6605 0.66050319 1254 Karp_00934 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 43.627 43.947 2 8.0921E-06 14031 20181213_JW_Orientia_Karp_2_2 175.93 62.227 1229500000 330470000 262930000 383040000 57427000 45611000 38694000 109920000 1397600 1921 1254 1682 11823;11824;11825;11826;11827;11828;11829;11830 7749;7750;7751;7752;7753;7754;7755 7753 7 EISQNIQEQDK Unmodified 1330.6365 0.63647328 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 29.608 29.608 2 9.8777E-26 8159 20181213_JW_Orientia_Karp_1_1 250.92 30.526 9627000 9627000 0 0 0 0 0 0 0 1922 1266 1683 11831;11832 7756;7757 7756 2 EITALAPSTMK Oxidation (M) 1176.606 0.60602477 1717;1743;351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;Q13707;B4DUI8;P63267-2;B3KPP5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96FU6;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9UE89;P63261;B4E3A4;B4DVQ0 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 4 2 3 1 41.725 42.031 2 3.809E-07 12308 20181213_JW_Orientia_Karp_2_2 183.72 106.4 8611300000 1642200000 1680300000 2326600000 784350000 724630000 175810000 1177700000 99755000 1923 351;1717;1743 1684 11833;11834;11835;11836;11837;11838;11839;11840;11841;11842;11843;11844;11845;11846;11847;11848;11849;11850;11851;11852 7758;7759;7760;7761;7762;7763;7764;7765;7766;7767;7768;7769;7770;7771;7772;7773;7774;7775 7767 240 18 EITALAPSTMK Unmodified 1160.6111 0.61111015 1717;1743;351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;Q13707;B4DUI8;P63267-2;B3KPP5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96FU6;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9UE89;P63261;B4E3A4;B4DVQ0 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 2 47.123 47.475 2 7.4151E-13 15805 20181213_JW_Orientia_Karp_2_1 215.93 124.03 3472500000 1446500000 894760000 665280000 73011000 98228000 133170000 5164700 156400000 1924 351;1717;1743 1684 11853;11854;11855;11856;11857;11858;11859;11860;11861;11862;11863 7776;7777;7778;7779;7780;7781;7782;7783;7784;7785 7781 10 EITEVEFLGTILDADIASK Unmodified 2063.0674 0.067417448 1081;1151 Karp_00113;Karp_02444;Karp_00527;Karp_02508;Karp_01793 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 76.441 76.442 2 1.5657E-99 31385 20181213_JW_Orientia_Karp_2_3 318.07 230.36 171480000 34938000 29991000 0 19133000 29198000 0 57711000 509240 1925 1081;1151 1685 11864;11865;11866;11867;11868;11869;11870 7786;7787;7788;7789;7790;7791;7792;7793;7794 7792 9 EITLPYIFVIGNEK Unmodified 1634.892 0.89195969 1348 Karp_01524 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 74.655 74.687 2 1.6225E-11 34693 20181213_JW_Orientia_Karp_1_1 196.27 154.03 244770000 43782000 51715000 43785000 6911000 21384000 14548000 45499000 17144000 1926 1348 1686 11871;11872;11873;11874;11875;11876;11877;11878 7795;7796;7797;7798;7799;7800;7801 7795 7 EITLPYIFVIGNEK Deamidation (NQ) 1635.876 0.87597527 1348 Karp_01524 yes yes 0 1 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 76.023 76.017 2 0.0022021 31138 20181213_JW_Orientia_Karp_2_1 133.05 83.549 64125000 12264000 7788200 6833100 5761400 4721900 5459000 18757000 2540300 1927 1348 1686 11879;11880;11881;11882;11883;11884;11885;11886 7802;7803 7802 796 2 EITLQELQESQDLALSNEQR Unmodified 2343.1554 0.15539761 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 64.565 64.693 2;3 3.215E-29 28289 20181213_JW_Orientia_Karp_1_2 223.14 181.14 90989000 31693000 32021000 13700000 0 9336700 4238200 0 0 1928 1428 1687 11887;11888;11889;11890;11891;11892;11893 7804;7805;7806;7807 7805 4 EIVDAINEAIVK Unmodified 1312.7238 0.72383172 1303 Karp_01240 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 59.662 59.949 2 1.7143E-17 25265 20181213_JW_Orientia_Karp_1_2 224.75 122.24 47969000 11986000 11204000 12304000 4410000 4098900 2751500 0 1215300 1929 1303 1688 11894;11895;11896;11897;11898;11899;11900 7808;7809;7810;7811;7812 7809 5 EIVDSYLPVILDIIK Unmodified 1728.9913 0.99133938 22 Q53FJ5;A0A024QZQ2;C9JIZ6;Q59EN5;B1AVU8;P07602;P07602-2;P07602-3;B4DEK5;B4DRB7 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 78.028 78.021 2 4.1528E-05 31403 20181213_JW_Orientia_Karp_3_2 184.03 133.08 333260000 95232000 61573000 50880000 0 27387000 0 84680000 13510000 1930 22 1689 11901;11902;11903;11904;11905;11906 7813;7814;7815 7815 3 EIVHIQAGQCGNQIGTK Unmodified 1851.9261 0.92613014 1964 Q9BUF5;B4DP54;K7ESM5;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 TUBB6 Tubulin beta-6 chain no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 38.039 38.462 3 0.00389 11714 20181213_JW_Orientia_Karp_3_1 93.181 49.369 9410400 0 0 0 1005200 1549400 1686000 4135900 1034000 1931 1964 1690 11907;11908;11909;11910;11911 7816;7817 7817 2 EIVHLQAGQCGNQIGAK Unmodified 1821.9156 0.91556545 1747;1550 P04350;B4DJ43;B4DFH6;M0R2D3;M0R278;M0QY85;M0QZL7;M0R0X0;M0QY37;M0QX14;M0QYM7;M0R042;M0R2T4;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B4DNW1 TUBB4A;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta-4B chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 1 38.312 38.657 2;3 4.2292E-68 12264 20181213_JW_Orientia_Karp_1_2 275.66 0 408430000 107000000 105070000 80816000 13527000 9521200 0 80449000 12043000 1932 1550;1747 1691 11912;11913;11914;11915;11916;11917;11918;11919;11920;11921 7818;7819;7820;7821;7822;7823;7824 7819 7 EIVSLLQK Unmodified 928.55933 0.55933258 1110 Karp_00292 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 50.244 50.513 1;2 0.010649 17739 20181213_JW_Orientia_Karp_2_2 102.77 17.414 263500000 94960000 10205000 7147600 81829000 20865000 48262000 233790 0 1933 1110 1692 11922;11923;11924;11925;11926;11927;11928;11929 7825;7826;7827;7828 7827 4 EIVTNFLAGFEA Unmodified 1309.6554 0.65541781 1628 V9HW26;P25705-2;P25705;P25705-3 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 77.447 77.417 2 4.8453E-31 36508 20181213_JW_Orientia_Karp_1_1 252.82 176.72 158130000 92717000 0 32764000 0 5961300 5546700 21145000 0 1934 1628 1693 11930;11931;11932;11933;11934;11935 7829;7830;7831;7832;7833;7834 7829 6 EIVTNIK Unmodified 815.47527 0.4752686 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 34.062 34.396 2 0.01188 9282 20181213_JW_Orientia_Karp_2_1 138.24 9.3811 317970000 140450000 24185000 93895000 14620000 26581000 0 18239000 0 1935 1107 1694 11936;11937;11938;11939;11940;11941;11942 7835;7836;7837;7838 7836 4 EIVVLETLEDIDK Unmodified 1514.808 0.80795528 1805 V9HW95;Q15293;Q15293-2;Q5J7V8;E9PP27 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 72.91 72.94 2 3.3905E-105 26934 20181213_JW_Orientia_Karp_3_1 328.29 222.89 139730000 12526000 0 17249000 0 29405000 34916000 45636000 0 1936 1805 1695 11943;11944;11945;11946;11947 7839;7840;7841;7842;7843 7843 5 EIYDLDVVTVPTHNPVQR Unmodified 2094.0746 0.074568512 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.486 58.736 3 0.0063206 24874 20181213_JW_Orientia_Karp_1_1 83.869 63.43 113490000 37360000 18914000 35437000 4919900 6597500 10258000 0 0 1937 1374 1696 11948;11949;11950;11951;11952;11953 7844;7845;7846;7847;7848;7849 7844 6 EIYDLFGIK Unmodified 1096.5805 0.58046195 1407 Karp_02223 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 69.394 69.553 2 0.028759 24866 20181213_JW_Orientia_Karp_3_1 78.77 22.049 19253000 5951600 1520500 5224200 0 3094800 0 3075300 386530 1938 1407 1697 11954;11955;11956;11957;11958;11959 7850;7851;7852;7853 7853 4 EIYDLIAK Unmodified 963.5277 0.5276981 1140 Karp_00452 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 55.168 55.435 2 0.031504 22353 20181213_JW_Orientia_Karp_1_2 81.784 28.23 243110000 54328000 64579000 53929000 5050800 22365000 42856000 0 0 1939 1140 1698 11960;11961;11962;11963;11964;11965 7854;7855;7856 7854 3 EIYDLLITR Unmodified 1134.6285 0.62847478 1215 Karp_00879 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 65.873 66.003 2 0.0010372 29338 20181213_JW_Orientia_Karp_1_1 131.22 37.794 12280000 5599000 0 2729800 93468 3027500 830010 0 0 1940 1215 1699 11966;11967;11968;11969;11970;11971;11972 7857;7858;7859;7860;7861 7857 5 EIYTHFTCATDTK Unmodified 1585.7083 0.70825802 1555 P04899;P04899-4;B3KP24;B3KX51;Q96C71;P04899-6;P04899-3;P04899-5;P04899-2;Q6LCB5;P63096;P08754;P63096-2 GNAI2;WUGSC:H_LUCA15.1;GNAI1;GNAI3 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(k) subunit alpha yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 38.537 38.854 3 0.036572 12126 20181213_JW_Orientia_Karp_1_3 56.956 7.6755 44068000 17926000 11936000 8374300 1845900 669560 0 3316200 0 1941 1555 1700 11973;11974;11975;11976;11977;11978 7862 7862 1 EKLEATINELV Unmodified 1257.6816 0.68163256 1012 H9ZYJ2;P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.021 59.353 2 1.3624E-05 22537 20181213_JW_Orientia_Karp_2_2 180.19 121.49 38190000 0 0 4141700 9733500 9434000 12290000 0 2590200 1942 1012 1701 11979;11980;11981;11982;11983 7863;7864;7865;7866 7864 4 EKLQEEMLQR Unmodified 1302.6602 0.66018561 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 34.202 34.614 3 0.012151 9342 20181213_JW_Orientia_Karp_2_1 96.342 41.734 25649000 0 8516700 3163600 0 0 366670 1925200 11677000 1943 1571 1702 11984;11985;11986;11987;11988;11989 7867;7868;7869 7867 3 EKPTEGIVVMVGGGYR Oxidation (M) 1706.8662 0.86615564 1297 Karp_01188 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 6 2 7 5 5 1 6 46.483 46.834 3 3.5967E-06 14284 20181213_JW_Orientia_Karp_2_1 170.74 133.38 4287100000 847190000 608610000 613400000 858770000 217730000 287310000 814310000 39774000 1944 1297 1703 11990;11991;11992;11993;11994;11995;11996;11997;11998;11999;12000;12001;12002;12003;12004;12005;12006;12007;12008;12009;12010;12011;12012;12013;12014;12015;12016;12017;12018;12019;12020;12021;12022;12023;12024 7870;7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883;7884;7885;7886;7887;7888;7889;7890;7891 7877 856 21 EKPTEGIVVMVGGGYR Unmodified 1690.8712 0.87124102 1297 Karp_01188 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 3 2 2 3 2 3 50.022 50.351 2;3 3.6509E-36 16474 20181213_JW_Orientia_Karp_3_2 270.93 217.33 7691100000 1982500000 1739700000 1226500000 1228700000 459140000 820130000 12330000 222070000 1945 1297 1703 12025;12026;12027;12028;12029;12030;12031;12032;12033;12034;12035;12036;12037;12038;12039;12040;12041;12042;12043;12044 7892;7893;7894;7895;7896;7897;7898;7899;7900 7900 9 EKPTEGIVVMVGGGYRNDK Oxidation (M);Deamidation (NQ) 2065.015 0.015004722 1297 Karp_01188 yes yes 0 1 1 2 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 2 2 2 1 1 2 1 39.662 40.022 4 0.00092128 12216 20181213_JW_Orientia_Karp_3_1 104.16 77.669 571300000 42959000 51759000 60153000 177430000 31178000 14601000 191570000 1650700 1946 1297 1704 12045;12046;12047;12048;12049;12050;12051;12052;12053;12054;12055;12056 7901;7902;7903 7903 722 856 3 EKPTEGIVVMVGGGYRNDK Deamidation (NQ) 2049.0201 0.0200901 1297 Karp_01188 yes yes 0 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 45.434 45.672 4 0.00095027 14887 20181213_JW_Orientia_Karp_2_2 105.39 61.095 418050000 36571000 331290000 0 27602000 22587000 0 0 0 1947 1297 1704 12057;12058;12059;12060 7904;7905;7906;7907 7907 722 4 EKPYFPIPEEYTFIQNVPLEDR Unmodified 2723.3483 0.34828376 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 72.09 72.166 3 0.00042957 32715 20181213_JW_Orientia_Karp_1_3 113.71 72.301 536750000 212560000 87254000 142040000 0 24209000 18159000 0 52526000 1948 595 1705 12061;12062;12063;12064;12065;12066 7908;7909;7910 7910 3 EKQALLQNLK 2 Deamidation (NQ) 1185.6605 0.66050319 964 Q9Y6X7;H0Y2S9 KIAA0864;MPRIP yes no 0 2 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 69.468 69.536 2 0.00045029 30993 20181213_JW_Orientia_Karp_1_3 175.51 14.601 16297000 13130000 0 0 0 2320300 846580 0 0 1949 964 1706 12067;12068;12069;12070 7911;7912 7912 337;1740 2 EKTDLLNQFTSISSK Unmodified 1709.8836 0.88357984 1315 Karp_01271 yes yes 0 0 0 1 By MS/MS By MS/MS 1 1 54.248 54.499 3 0.015338 19876 20181213_JW_Orientia_Karp_2_2 89.992 55.809 5004900 0 0 0 0 5004900 0 0 0 1950 1315 1707 12071;12072 7913;7914 7914 2 EKVQLEFENQEMEKK 2 Deamidation (NQ) 1909.8979 0.89790928 410 A8MT70-3;C9J608 ZBBX Zinc finger B-box domain-containing protein 1 yes no 0 2 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 74.284 74.311 2 0.039494 27559 20181213_JW_Orientia_Karp_3_1 90.149 7.6598 90608000 37432000 0 33553000 0 6467100 4742500 6985900 1427800 1951 410 1708 12073;12074;12075;12076;12077;12078 7915 7915 1428 1 ELAAEDEQVFLMK Oxidation (M) 1537.7334 0.73341013 142 J3KRI4;A0A024R6Z0;O43237-2;O43237;J3KSD2 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 0 0 1 0 By MS/MS 1 53.898 54.248 2 0.010791 21644 20181213_JW_Orientia_Karp_1_2 94.363 55.558 1900500 0 1900500 0 0 0 0 0 0 1952 142 1709 12079 7916 7916 126 1 ELAEDDSILK Unmodified 1131.5659 0.5659341 1712 P56385 ATP5I ATP synthase subunit e, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 47.616 47.961 2 0.0003345 16523 20181213_JW_Orientia_Karp_2_3 140.35 51.984 206130000 61817000 71778000 42582000 11636000 4244300 5569600 71723 8432300 1953 1712 1710 12080;12081;12082;12083;12084;12085;12086;12087;12088 7917;7918;7919;7920;7921 7920 4 ELAEDGYSGVEVR Unmodified 1422.6627 0.66268803 1623 Q53G83;P23396;P23396-2;F2Z2S8;H0YCJ7;E9PPU1;E9PL09;E9PQ96;E9PJH4;H0YF32;E9PK82;H0YEU2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 45.281 45.581 2 0.0051267 15824 20181213_JW_Orientia_Karp_1_3 122.33 75.139 35728000 6449500 11159000 17113000 0 0 0 1007300 0 1954 1623 1711 12089;12090;12091;12092 7922;7923;7924 7923 3 ELAEQLGLSTGEK Unmodified 1373.7038 0.70382456 1053 K7ER90;K7EL20;Q6IAM0;O75821;B7Z1G0;A8K5K5 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 49.843 50.203 2 0.031496 19278 20181213_JW_Orientia_Karp_1_1 78.342 29.918 54823000 9259500 20186000 0 10787000 0 14447000 143570 0 1955 1053 1712 12093;12094;12095;12096;12097 7925;7926 7925 2 ELAGSGIIPGLR Unmodified 1181.6768 0.67682195 1229 Karp_00896 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 60.14 60.39 2 2.8093E-23 23299 20181213_JW_Orientia_Karp_2_3 237.44 149.26 1102500000 140650000 178220000 442560000 53565000 128890000 158620000 0 0 1956 1229 1713 12098;12099;12100;12101;12102;12103;12104 7927;7928;7929;7930;7931;7932;7933 7932 7 ELAILESVK Unmodified 1000.5805 0.58046195 1310 Karp_01252 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 55.953 56.326 2 0.00074282 23373 20181213_JW_Orientia_Karp_1_1 150.36 51.732 505970000 145600000 34366000 134340000 21911000 0 154760000 14336000 660220 1957 1310 1714 12105;12106;12107;12108;12109;12110;12111;12112 7934;7935;7936;7937;7938;7939;7940 7934 7 ELAILLGMLDPAEK Unmodified 1511.8269 0.82691659 1644 V9HWC7;P30041;A4UCS6 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 75.595 75.61 2 0.00065168 35034 20181213_JW_Orientia_Karp_1_3 142.97 75.192 12859000 2472900 0 4537700 1386600 1421500 694540 1745500 600830 1958 1644 1715 12113;12114;12115;12116;12117;12118;12119 7941;7942;7943 7941 2 ELALLPFVYHQ Unmodified 1328.7129 0.71287311 1255 Karp_00935 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 74.141 74.17 2 7.4534E-13 34139 20181213_JW_Orientia_Karp_1_3 215.88 159.32 1186800000 627190000 192020000 293790000 25978000 0 8088600 15076000 24685000 1959 1255 1716 12120;12121;12122;12123;12124;12125;12126 7944;7945;7946;7947;7948;7949 7946 6 ELAPYDENWFYTR Unmodified 1702.7627 0.76273643 433 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 RPS19 40S ribosomal protein S19 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 66.068 66.275 2 7.1853E-05 23201 20181213_JW_Orientia_Karp_3_1 178.95 129.77 444270000 140450000 75635000 66489000 4651900 40727000 28268000 64512000 23530000 1960 433 1717 12127;12128;12129;12130;12131;12132;12133;12134 7950;7951;7952;7953;7954;7955;7956;7957;7958;7959 7956 10 ELAVQIYEEAR Unmodified 1319.6721 0.67213051 178 B4E010;B4DLU5;A0A024R9A4;B5BTY4;Q59GX6;O15523-3;O00571-2;O15523-2;O15523;O00571 DDX3Y;DDX3X ATP-dependent RNA helicase DDX3Y;ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 52.91 53.247 2 0.0039211 20907 20181213_JW_Orientia_Karp_1_2 109.83 49.001 149450000 0 57517000 48549000 21988000 0 21396000 0 0 1961 178 1718 12135;12136;12137;12138 7960 7960 1 ELCQGLGQPGSVLR Unmodified 1512.7719 0.77186132 237 A0A024RC87;P13489;H0YCR7 RNH1 Ribonuclease inhibitor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 50.222 50.529 2 0.00026076 19100 20181213_JW_Orientia_Karp_1_2 179.59 91.781 62331000 13329000 16746000 14691000 3545900 2388100 2841100 8789000 0 1962 237 1719 12139;12140;12141;12142;12143;12144;12145 7961;7962;7963;7964 7962 4 ELDALDANDELTPLGR Unmodified 1740.853 0.853008 1777 Q08211;B3KU66 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 65.246 65.445 2 1.7997E-05 28986 20181213_JW_Orientia_Karp_1_1 159.66 111.95 33183000 9006400 6921300 14349000 0 0 0 2906400 0 1963 1777 1720 12146;12147;12148;12149 7965;7966 7965 2 ELDDATEANEGLSR Unmodified 1518.6798 0.67979466 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 40.204 40.387 2 0.00030433 13543 20181213_JW_Orientia_Karp_1_1 151.16 98.885 12033000 6951800 2754700 2326900 0 0 0 0 0 1964 944 1721 12150;12151;12152 7967 7967 1 ELDSTGTPTGK Unmodified 1104.5299 0.52988294 640 B4DU18;Q59EA3;P33151;B4DTP0 CDH5 Cadherin-5 yes no 0 0 0 0 By MS/MS 1 27.276 27.276 2 0.040135 7142 20181213_JW_Orientia_Karp_1_1 85.862 19.433 0 0 0 0 0 0 0 0 0 1965 640 1722 12153 7968 7968 1 ELEALPGVGR Unmodified 1039.5662 0.56620887 1198 Karp_00817 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 49.869 50.139 2 0.00016085 18644 20181213_JW_Orientia_Karp_1_3 146.58 81.338 222280000 63500000 65473000 55508000 25456000 0 12348000 0 0 1966 1198 1723 12154;12155;12156;12157;12158;12159 7969;7970;7971;7972;7973 7971 5 ELEDATETADAMNR Oxidation (M) 1580.6624 0.66243003 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 34.392 34.752 2 1.1941E-105 10596 20181213_JW_Orientia_Karp_1_1 328.29 257.89 138740000 42733000 72037000 0 7156300 3661500 0 13147000 0 1967 47 1724 12160;12161;12162;12163;12164 7974;7975;7976 7974 36 3 ELEDATETADAMNR Unmodified 1564.6675 0.66751541 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.067 42.412 2 5.7427E-88 14019 20181213_JW_Orientia_Karp_1_3 303.31 234.46 164050000 58681000 30537000 40629000 17905000 0 1782800 11999000 2517700 1968 47 1724 12165;12166;12167;12168;12169;12170;12171 7977;7978;7979;7980;7981;7982;7983 7979 7 ELEDLLSPLEELVK Unmodified 1625.8764 0.8763692 15 M0QXN5;A0A024QZF1;P37198 NUP62;hCG_19665 Nuclear pore glycoprotein p62 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 1 1 2 2 77.265 77.266 2 6.8745E-05 36382 20181213_JW_Orientia_Karp_1_1 205.52 111.11 65486000 14933000 9675500 10039000 5141300 6832600 3304500 13330000 2230000 1969 15 1725 12172;12173;12174;12175;12176;12177;12178;12179;12180;12181;12182;12183;12184;12185 7984;7985;7986;7987;7988 7984 5 ELEEIVQPIISK Unmodified 1396.7813 0.7813466 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 61.574 61.881 2 7.7392E-23 24147 20181213_JW_Orientia_Karp_2_1 231.07 176.53 285720000 99690000 31013000 57788000 16594000 36325000 30052000 2322700 11937000 1970 1585 1726 12186;12187;12188;12189;12190;12191;12192;12193 7989;7990;7991;7992;7993;7994;7995;7996 7992 8 ELEELSLEAQGIK Unmodified 1457.7613 0.76133944 1516 Q8N5A0;O60841;A0JLR8;Q05CQ1 EIF5B Eukaryotic translation initiation factor 5B yes no 0 0 0 0 By MS/MS 1 56.668 56.867 2 0.016005 23051 20181213_JW_Orientia_Karp_1_3 89.561 24.404 13029000 0 0 13029000 0 0 0 0 0 1971 1516 1727 12194 7997 7997 1 ELEEWYAR Unmodified 1094.5033 0.50327426 1577 P09496-5;P09496-2;C9J8P9;F8WF69;P09496-4;P09496-3;P09496 CLTA Clathrin light chain A yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 47.874 48.201 2 0.0070035 16494 20181213_JW_Orientia_Karp_2_1 113.41 38.368 67378000 12555000 13133000 14903000 14464000 0 6831500 0 5492100 1972 1577 1728 12195;12196;12197;12198;12199;12200 7998 7998 1 ELEFNKFPFGIGGSLGAYVNR Unmodified 2314.1746 0.17461691 1372 Karp_02002 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 72.087 72.181 3 0.00013595 32724 20181213_JW_Orientia_Karp_1_3 121.77 76.516 100620000 19054000 15679000 9634700 10192000 9592300 9332000 19803000 7335200 1973 1372 1729 12201;12202;12203;12204;12205;12206;12207;12208 7999;8000 8000 2 ELEFYLR Unmodified 968.49673 0.49673232 1726 Q5JR95;Q5JR94;P62241;Q9BS10 RPS8 40S ribosomal protein S8 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.077 57.354 2 0.023841 20142 20181213_JW_Orientia_Karp_3_2 97.473 35.365 129850000 60284000 26503000 12213000 0 4211600 12154000 0 14488000 1974 1726 1730 12209;12210;12211;12212;12213;12214;12215 8001;8002;8003;8004 8004 4 ELEGLQQLLQNVK Unmodified 1510.8355 0.83550744 1778 Q08378-2;Q08378 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 70.399 70.549 2 0.0012516 25462 20181213_JW_Orientia_Karp_3_1 134.84 67.282 11902000 0 0 0 984490 4113500 889610 5914300 0 1975 1778 1731 12216;12217;12218;12219 8005 8005 1 ELENLATNMTEEIDQAITEPDLK Oxidation (M) 2632.2426 0.24255764 2045 yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 1 2 1 1 75.629 75.634 2 0.01991 35396 20181213_JW_Orientia_Karp_1_2 62.077 14.776 705530000 0 137090000 219190000 3793300 150990000 73752000 120710000 0 + 1976 2045 1732 12220;12221;12222;12223;12224;12225;12226;12227;12228 8006;8007;8008 8006 1559 3 ELEQGQAGDNVGILLR Unmodified 1710.8901 0.89006221 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 5 4 4 3 3 1 58.624 58.913 2;3 2.1541E-49 22044 20181213_JW_Orientia_Karp_2_3 291.75 205.94 6596400000 2330200000 1065300000 1736300000 418930000 636170000 402180000 4763700 2551000 1977 1176;1244 1733 12229;12230;12231;12232;12233;12234;12235;12236;12237;12238;12239;12240;12241;12242;12243;12244;12245;12246;12247;12248;12249;12250;12251;12252;12253;12254;12255;12256;12257 8009;8010;8011;8012;8013;8014;8015;8016;8017;8018;8019;8020;8021;8022;8023;8024;8025;8026;8027;8028;8029 8027 18 ELEQGQAGDNVGILLR Deamidation (NQ) 1711.8741 0.87407779 1176;1244 Karp_00632;Karp_00911 no no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 64.141 64.342 2 4.6666E-09 28050 20181213_JW_Orientia_Karp_1_2 190.37 123.29 59678000 11165000 26995000 8290500 1555200 6263500 4177900 0 1231300 1978 1176;1244 1733 12258;12259;12260;12261;12262;12263;12264 8030;8031 8030 581 2 ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK Unmodified 3054.4869 0.48691928 369 A8K5I0;P08107-2;P08107;B4DFN9;B4DNT8;Q59EJ3;B4E388;B4DI39;B4DWK5;B4E1T6;B4DVU9;B4E1S9;V9GZ37;B3KTT5 HEL-S-103;HSPA1A Heat shock 70 kDa protein 1A yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 71.79 71.873 3 1.1137E-05 32849 20181213_JW_Orientia_Karp_1_1 87.025 68.145 38071000 14015000 0 11430000 0 0 0 12626000 0 1979 369 1734 12265;12266;12267 8032 8032 1 ELESQISELQEDLESER Unmodified 2032.9437 0.9436735 47 A0A024R1N1;P35579;Q86XU5;Q99529 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 2 65.293 65.502 2;3 0 28611 20181213_JW_Orientia_Karp_1_2 448.81 263.83 477730000 119270000 106580000 132330000 688990 44286000 18944000 55630000 0 1980 47 1735 12268;12269;12270;12271;12272;12273;12274;12275;12276;12277;12278 8033;8034;8035;8036;8037;8038;8039 8034 6 ELESQVSGLEK Unmodified 1217.6139 0.61394692 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 40.519 40.768 2 7.0938E-06 12979 20181213_JW_Orientia_Karp_1_3 176.48 74.588 22897000 10409000 2146300 9129300 1212300 0 0 0 0 1981 279 1736 12279;12280;12281;12282 8040;8041;8042 8042 3 ELEWINQSPK Unmodified 1242.6245 0.62445203 1315 Karp_01271 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.192 50.442 2 3.7946E-25 19005 20181213_JW_Orientia_Karp_1_2 251.98 152.98 362230000 89943000 74977000 59638000 60508000 27068000 50096000 0 0 1982 1315 1737 12283;12284;12285;12286;12287;12288;12289 8043;8044;8045;8046;8047;8048;8049 8044 7 ELFIQQERFFLNMK Oxidation (M) 1857.9447 0.94474031 483 B2RAK1;Q9UIQ6-3;Q9UIQ6-2;Q9UIQ6 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes no 0 0 1 1 By matching By matching By matching By MS/MS 1 1 1 1 35.505 35.918 4 0.02556 10275 20181213_JW_Orientia_Karp_3_1 65.809 26.861 825670000 0 0 586430000 132690000 2531300 0 104020000 0 1983 483 1738 12290;12291;12292;12293 8050 8050 312 1 ELFLDGLTLLDLTQVK Unmodified 1817.0186 0.018616762 1348 Karp_01524 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 77.819 77.802 2 0.00079957 36536 20181213_JW_Orientia_Karp_1_3 130.69 68.278 20877000 5179100 3450400 4352400 1785100 1717000 0 4392700 0 1984 1348 1739 12294;12295;12296;12297;12298;12299 8051;8052;8053 8053 3 ELGDVVIVDK Unmodified 1085.5968 0.5968403 1110 Karp_00292 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.414 52.714 2 0.02013 19197 20181213_JW_Orientia_Karp_2_3 83.998 0.79221 69084000 0 13458000 24154000 12801000 7698500 10972000 0 0 1985 1110 1740 12300;12301;12302;12303;12304 8054 8054 1 ELGFDASEVELTR Unmodified 1464.7096 0.70963822 579 B4DI61;Q6FI18;Q53FA4;O00622;Q9UID7 CYR61 Protein CYR61 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 60.921 61.292 2 3.8807E-05 23581 20181213_JW_Orientia_Karp_2_2 196.11 127.33 47329000 0 9668100 0 5596700 18830000 10086000 3148200 0 1986 579 1741 12305;12306;12307;12308;12309 8055;8056;8057 8056 3 ELGGESNFGDALLDAGESMK Unmodified 2038.9154 0.91535026 1861 Q9UQD4;Q6FGM0;Q99961;M0QYE0;M0R0I3 SH3GL1 Endophilin-A2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 68.173 68.394 2 1.9686E-48 30221 20181213_JW_Orientia_Karp_1_3 252.1 185.91 49621000 15827000 12390000 16365000 2709800 0 0 0 2330100 1987 1861 1742 12310;12311;12312;12313;12314;12315 8058;8059;8060;8061;8062 8061 5 ELGILTVAVVTK Unmodified 1241.7595 0.75948895 1404 Karp_02212 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 66.495 66.655 2 0.0022599 29422 20181213_JW_Orientia_Karp_1_2 139.15 93.473 33149000 10115000 3666800 8001600 0 4802200 3962300 0 2600900 1988 1404 1743 12316;12317;12318;12319;12320;12321;12322 8063;8064;8065 8063 3 ELGILTVAVVTKPFTLEGGQR Unmodified 2227.2576 0.25761826 1404 Karp_02212 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 71.716 71.794 3 0.0011904 29261 20181213_JW_Orientia_Karp_2_1 105.5 88.131 42604000 5372800 3610200 3281900 2452500 8180200 3724300 15982000 0 1989 1404 1744 12323;12324;12325;12326;12327;12328;12329 8066 8066 1 ELGIQYVVGK Unmodified 1104.6179 0.61791009 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 54.166 54.431 2 3.3804E-07 19935 20181213_JW_Orientia_Karp_2_1 185.72 128.54 411900000 128000000 44594000 140220000 27254000 32903000 38939000 0 0 1990 1066 1745 12330;12331;12332;12333;12334;12335;12336 8067;8068;8069;8070;8071 8069 5 ELGIWEPLAVK Unmodified 1253.702 0.70197407 543 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368-2;P49368 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 68.2 68.401 2 0.00024018 30828 20181213_JW_Orientia_Karp_1_1 153.24 108.22 30400000 6917400 9847000 7699000 0 1633800 1817500 983910 1501200 1991 543 1746 12337;12338;12339;12340;12341;12342;12343 8072;8073;8074;8075;8076 8072 5 ELGLLQPR Unmodified 924.53927 0.53926584 1281 Karp_01117 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 49.484 49.786 2 0.0012383 19064 20181213_JW_Orientia_Karp_1_1 178.6 54.261 325780000 98103000 97553000 47259000 44603000 14119000 23485000 0 660590 1992 1281 1747 12344;12345;12346;12347;12348;12349;12350;12351 8077;8078;8079;8080;8081;8082;8083 8077 7 ELGTVMR Oxidation (M) 820.41129 0.41128813 497 Q9BRL5;B4DJ51;B2RDW0;H0Y7A7;P62158;E7ETZ0;E7EMB3;A8K1M2;F8WBR5;M0QZ52;G3V479;P27482;B4DUI9;C9J7T9;P02585 CALM3;CALM2;CALM1;CALML3;TNNC2 Calmodulin;Calmodulin-like protein 3;Troponin C, skeletal muscle yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 26.208 26.641 2 0.037596 5345 20181213_JW_Orientia_Karp_2_2 80.462 80.462 52305000 5325700 0 0 20865000 15465000 0 7187000 3462300 1993 497 1748 12352;12353;12354;12355;12356 8084 8084 1 ELGVGIALR Unmodified 926.55492 0.5549159 871 E7DVW5;Q01469 FABP5 Fatty acid-binding protein, epidermal yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.074 54.341 2 7.7578E-06 19798 20181213_JW_Orientia_Karp_2_2 198.07 90.175 221440000 30978000 10119000 90819000 21509000 24423000 43594000 0 0 1994 871 1749 12357;12358;12359;12360;12361;12362 8085;8086;8087;8088;8089;8090;8091 8090 7 ELHINLIPNK Unmodified 1189.6819 0.68190733 1057 K9JA46;P07900;P07900-2;Q2VPJ6;G3V2J8;B4DTA5;Q86SX1;Q14568 EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 2 2 1 48.814 49.054 2;3 0.0009178 18103 20181213_JW_Orientia_Karp_1_2 122.52 83.725 63844000 21571000 16525000 12208000 8150500 2889200 2499500 0 0 1995 1057 1750 12363;12364;12365;12366;12367;12368;12369;12370;12371;12372 8092;8093;8094;8095;8096 8093 5 ELIAAVSNIHFNK Unmodified 1454.7882 0.78816332 1398 Karp_02184 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 51.963 52.233 2;3 0.0026942 20734 20181213_JW_Orientia_Karp_1_1 119.03 73.66 93375000 27313000 31824000 9850500 11764000 1026900 7360200 4237100 0 1996 1398 1751 12373;12374;12375;12376;12377;12378;12379;12380;12381;12382 8097;8098;8099 8097 3 ELIEIISGAAALD Unmodified 1313.7078 0.70784731 1658 Q8TAS0;P36542 ATP5C1 ATP synthase subunit gamma;ATP synthase subunit gamma, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 77.171 77.161 2 2.3051E-05 36332 20181213_JW_Orientia_Karp_1_1 175.93 131.98 28509000 16614000 4770400 3685600 0 0 1245000 2194200 0 1997 1658 1752 12383;12384;12385;12386;12387 8100;8101;8102 8100 3 ELIEIISSPLLYR Unmodified 1544.8814 0.881395 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.891 73.912 2 3.0028E-11 34226 20181213_JW_Orientia_Karp_1_2 199.09 148.8 252780000 83946000 64667000 69114000 923320 14897000 4053600 15179000 0 1998 1188 1753 12388;12389;12390;12391;12392;12393;12394 8103;8104;8105;8106;8107;8108 8104 6 ELIEVISSAEAIT Unmodified 1373.729 0.72897668 1381 Karp_02118 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 74.734 74.758 2 7.4402E-86 34469 20181213_JW_Orientia_Karp_1_3 315.22 253.53 94565000 59210000 12234000 0 654000 10583000 7464400 4420100 0 1999 1381 1754 12395;12396;12397;12398;12399;12400;12401 8109;8110;8111;8112;8113 8110 5 ELIIGDR Unmodified 814.45487 0.45486751 1380;1628 Karp_02117;V9HW26;P25705-2;P25705;P25705-3;K7EK77;B4DGW3;K7ENJ4 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 42.634 42.905 2 0.027706 14917 20181213_JW_Orientia_Karp_1_1 92.47 12.531 126220000 86930000 21765000 10438000 0 3310400 0 3780300 0 2000 1380;1628 1755 12402;12403;12404;12405;12406 8114;8115;8116 8114 3 ELIILTAENDDIELGQLTDK Unmodified 2242.158 0.15802337 1390 Karp_02139 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 73.297 73.317 3 0.015808 29971 20181213_JW_Orientia_Karp_2_3 61.304 39.293 46849000 19436000 9190300 0 0 0 6426500 11796000 0 2001 1390 1756 12407;12408;12409;12410 8117 8117 1 ELIPTEEALR Unmodified 1169.6292 0.62920306 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;Q96IE3 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 52.394 52.736 2 0.038885 21015 20181213_JW_Orientia_Karp_1_1 72.879 1.0018 63874000 18180000 24840000 17525000 3281200 0 0 0 47186 2002 1803 1757 12411;12412;12413;12414;12415 8118 8118 1 ELISNASDACDK Unmodified 1321.582 0.58199487 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 34.153 34.328 2 7.4687E-23 10013 20181213_JW_Orientia_Karp_1_2 231.42 170.74 14686000 8415800 6270000 0 0 0 0 0 0 2003 1251 1758 12416;12417;12418 8119;8120;8121 8120 3 ELISNSSDALDK Unmodified 1290.6303 0.63032527 1057 K9JA46;P07900;P07900-2;Q2VPJ6;G3V2J8;B4DTA5;Q86SX1;Q14568 EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 41.954 42.264 2 0.00034421 14523 20181213_JW_Orientia_Karp_1_1 155.11 68.282 54850000 20606000 13023000 10826000 0 1154100 0 8790300 450760 2004 1057 1759 12419;12420;12421;12422;12423;12424 8122;8123;8124 8122 3 ELITTVQEL Unmodified 1044.5703 0.5702912 1110 Karp_00292 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.506 67.636 2 3.8538E-21 30216 20181213_JW_Orientia_Karp_1_1 250.99 132.98 71159000 42126000 3059300 8272000 0 11670000 6031600 0 0 2005 1110 1760 12425;12426;12427;12428;12429 8125;8126;8127;8128;8129 8125 5 ELLDFVPK Unmodified 959.53278 0.53278348 544 B3KX39;H0YBS0;P16157-11;P16157-9;P16157-6;P16157-7;P16157-4;P16157-13;P16157-10;P16157-15;P16157-8;P16157-5;P16157-16;P16157-3;P16157;P16157-21;P16157-12;P16157-14;P16157-2 ANK1 Ankyrin-1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 23.832 24.174 2 0.03566 5374 20181213_JW_Orientia_Karp_1_3 79.451 24.675 8682000 1407500 3736200 1685000 0 0 0 775830 1077600 2006 544 1761 12430;12431;12432;12433;12434 8130 8130 1 ELLGIQISK Unmodified 999.59645 0.59644637 1147 Karp_00502 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 55.289 55.415 2 0.0094176 22294 20181213_JW_Orientia_Karp_1_2 117.81 37.356 37009000 27188000 0 0 0 9820600 0 0 0 2007 1147 1762 12435;12436;12437;12438 8131;8132;8133 8132 3 ELLGQGLLLR Unmodified 1110.6761 0.67609367 5 A0A024QYX7;B3KNZ4;B4DRU0;B4DVU3;B4E2Z6;B4DDN4;B4DVQ5;A1KYQ7;A0A024QYU9;Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 63.737 63.899 2 5.2465E-08 28171 20181213_JW_Orientia_Karp_1_1 195.06 112.39 31723000 22614000 0 5463600 0 1563100 1228500 0 853660 2008 5 1763 12439;12440;12441;12442;12443;12444 8134;8135;8136;8137;8138 8134 5 ELLIIGGVAAR Unmodified 1110.6761 0.67609367 292 F1T0B3;A3RJH1;Q92499-3;Q92499;B4DP70;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 60.669 60.852 2 0.00027323 25890 20181213_JW_Orientia_Karp_1_2 151.44 107.67 15505000 7321400 4396000 3787700 0 0 0 0 0 2009 292 1764 12445;12446;12447 8139 8139 1 ELLLPNWQGSGSHGLTIAQR Unmodified 2176.1389 0.1389001 1782 Q09666;B4DTV0;E9PQE3;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q96EC4;Q9BVU3;Q09666-2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 60.285 60.546 3 0.019334 23144 20181213_JW_Orientia_Karp_2_2 56.959 20.766 311900000 80060000 121480000 0 20994000 43615000 45758000 0 0 2010 1782 1765 12448;12449;12450;12451;12452 8140;8141 8141 2 ELLLQPVTISR Unmodified 1267.75 0.7499869 947;1714 F8WCF6;P59998;P59998-3;F8WDD7;H7C0A3;Q9H7Z5;P59998-2 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 61.101 61.388 2 1.7622E-06 22638 20181213_JW_Orientia_Karp_3_2 179.42 96.996 73757000 19963000 17858000 19442000 941760 6150700 5768000 0 3635200 2011 947;1714 1766 12453;12454;12455;12456;12457;12458;12459 8142;8143;8144;8145;8146;8147;8148;8149 8149 8 ELLLTGPGLEER Unmodified 1325.7191 0.7190807 94 A0A024R4G1;Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes no 0 0 0 0 By MS/MS 1 58.808 58.808 2 0.0059263 24833 20181213_JW_Orientia_Karp_1_1 105.17 7.1995 15013000 15013000 0 0 0 0 0 0 0 2012 94 1767 12460 8150;8151 8150 2 ELLPVLISAMK Unmodified 1212.7152 0.71518129 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;P18206-3 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 72.38 72.454 2 0.002034 33303 20181213_JW_Orientia_Karp_1_1 117.7 45.151 67439000 36984000 8121800 10652000 0 0 0 11681000 0 2013 19 1768 12461;12462;12463;12464 8152;8153;8154 8152 3 ELLPVLISAMK Oxidation (M) 1228.7101 0.71009592 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;P18206-3 VCL;HEL114 Vinculin yes no 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 64.999 65.173 2 0.0068175 28159 20181213_JW_Orientia_Karp_1_3 99.013 60.72 6057100 0 1174300 4882800 0 0 0 0 0 2014 19 1768 12465;12466;12467 8155;8156 8156 6 2 ELLQDICK Unmodified 1017.5165 0.51648149 1316 Karp_01272 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 46.367 46.633 2 0.011348 15968 20181213_JW_Orientia_Karp_2_3 101.64 14.849 43342000 0 17667000 19640000 0 0 6035000 0 0 2015 1316 1769 12468;12469;12470;12471 8157;8158;8159;8160;8161 8160 5 ELLQQFYR Unmodified 1095.5713 0.57129425 1444 Karp_02422 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.878 53.178 2 0.0012965 20942 20181213_JW_Orientia_Karp_1_2 171.38 82.243 147460000 35813000 0 38876000 25897000 17959000 26719000 2195400 0 2016 1444 1770 12472;12473;12474;12475;12476;12477;12478 8162;8163;8164;8165;8166;8167;8168 8163 7 ELLTKYDFPGDTVPIIR Unmodified 1976.0619 0.06187856 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 1 By matching By MS/MS By matching By MS/MS 1 1 1 1 64.784 64.884 3 0.00099759 28027 20181213_JW_Orientia_Karp_1_3 118.71 81.764 49942000 24675000 0 7498500 0 10600000 7168400 0 0 2017 1176;1244 1771 12479;12480;12481;12482 8169;8170 8169 2 ELLTSFGPLK Unmodified 1103.6227 0.62266112 697 K7ENG2;B5BU25;P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 By MS/MS 1 61.175 61.525 2 0.008908 26345 20181213_JW_Orientia_Karp_1_2 95.358 17.436 7256400 0 7256400 0 0 0 0 0 0 2018 697 1772 12483 8171 8171 1 ELLTTMGDR Oxidation (M) 1050.5016 0.5015597 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;P24844-2;Q53HL1;J3QRS3;P19105;Q2F834 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 34.973 35.303 2 0.0011533 10427 20181213_JW_Orientia_Karp_1_2 126.24 59.813 1365700000 320000000 377860000 240000000 0 4952700 26359000 203230000 193270000 2019 1498;1626;1831 1773 12484;12485;12486;12487;12488;12489;12490 8172;8173;8174;8175;8176;8177 8173 1105 6 ELLTTMGDR Unmodified 1034.5066 0.50664508 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;P24844-2;Q53HL1;J3QRS3;P19105;Q2F834 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 44.043 44.356 2 0.00080867 14529 20181213_JW_Orientia_Karp_3_1 138.06 69.276 500620000 194160000 250890000 0 0 0 19952000 35610000 0 2020 1498;1626;1831 1773 12491;12492;12493;12494;12495 8178;8179;8180;8181;8182 8182 5 ELLVGQVAACSLDSIIIGDK Unmodified 2100.1137 0.11365613 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 74.487 74.486 2;3 0.00041158 27720 20181213_JW_Orientia_Karp_3_1 153.48 113.9 7165900 0 5810400 0 0 0 1355500 0 0 2021 1170 1774 12496;12497;12498 8183;8184 8184 2 ELLVPLTSSMYVPGK Unmodified 1632.8797 0.87968044 1955 Q99471 PFDN5 Prefoldin subunit 5 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 69.927 70.078 2 0.02242 25180 20181213_JW_Orientia_Karp_3_1 79.201 44.481 36770000 13444000 6056500 0 1915900 3895900 1726200 7514400 2217200 2022 1955 1775 12499;12500;12501;12502;12503;12504;12505 8185;8186;8187 8187 3 ELLYGGTSPTAETILK Unmodified 1691.8982 0.89816728 372 B3KRE0;Q5JW30;A8K622;Q59F99;O95793-2;O95793-3;O95793;B4DPJ9 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 60.43 60.68 2 0.013112 25458 20181213_JW_Orientia_Karp_1_3 81.676 39.466 17614000 7052600 3129500 5627800 1804000 0 0 0 0 2023 372 1776 12506;12507;12508;12509 8188 8188 1 ELMHPHSSISQWDIFDIK Oxidation (M) 2198.0466 0.046639202 1345 Karp_01521 yes yes 0 0 1 0 By matching By MS/MS By matching 1 1 1 57.794 58.165 4 0.041594 22290 20181213_JW_Orientia_Karp_2_3 49.535 17.355 5563000 0 0 0 0 2156600 3144300 0 262050 2024 1345 1777 12510;12511;12512 8189 8189 1 ELNEASEEGFLSK Unmodified 1451.678 0.67800374 1073 Karp_00049 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.034 48.379 2 9.6194E-59 16815 20181213_JW_Orientia_Karp_2_3 282.21 200.69 443880000 67146000 92147000 89517000 73786000 20468000 24452000 2304400 74064000 2025 1073 1778 12513;12514;12515;12516;12517;12518;12519;12520 8190;8191;8192;8193;8194;8195;8196 8193 7 ELNELVSAIEEHFFQPQK Unmodified 2157.0742 0.074234161 1938 Q96G03;B4DN40 PGM2 Phosphoglucomutase-2 yes no 0 0 0 0 By matching By MS/MS 1 1 73.972 73.997 3 0.034381 34318 20181213_JW_Orientia_Karp_1_2 48.131 5.3179 22297000 10947000 11350000 0 0 0 0 0 0 2026 1938 1779 12521;12522 8197 8197 1 ELNHMLSDTGNRK Oxidation (M) 1529.7256 0.72563941 1937 Q96FQ6 S100A16 Protein S100-A16 yes yes 0 0 1 1 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 2 1 19.55 19.879 3 0.016432 3576 20181213_JW_Orientia_Karp_2_3 68.676 36.052 8629600 0 0 1925900 1536400 1332800 2498600 1335700 0 2027 1937 1780 12523;12524;12525;12526;12527;12528;12529 8198;8199;8200 8200 1508 3 ELNIPIIALSQLSR Unmodified 1565.9141 0.91409211 1298 Karp_01190 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 74.408 74.45 2 1.5597E-34 34253 20181213_JW_Orientia_Karp_1_3 243.37 172.02 90245000 21618000 32042000 30106000 1431900 0 0 2396200 2650100 2028 1298 1781 12530;12531;12532;12533;12534;12535 8201;8202;8203;8204;8205 8203 5 ELNKAEVAGIDIQEVR Deamidation (NQ) 1783.9316 0.93159267 1296 Karp_01187 yes yes 0 1 0 1 By MS/MS By matching By matching 1 1 1 52.815 53.081 3 0.0024463 21219 20181213_JW_Orientia_Karp_1_1 122.33 66.442 11722000 2693500 0 0 4036000 0 4992500 0 0 2029 1296 1782 12536;12537;12538 8206 8206 709 1 ELNKAEVAGIDIQEVR Unmodified 1782.9476 0.94757708 1296 Karp_01187 yes yes 0 0 0 1 By MS/MS 1 49.464 49.615 3 0.0058283 17218 20181213_JW_Orientia_Karp_2_2 122.12 86.352 11939000 0 0 0 0 11939000 0 0 0 2030 1296 1782 12539 8207 8207 0 ELPDLEDLMK Oxidation (M) 1217.585 0.58495498 392 B3KV49;B4DX01;B7Z403;A8K8F0;Q9Y3E8;Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 58.602 58.802 2 0.036809 24548 20181213_JW_Orientia_Karp_1_2 70.816 19.288 12134000 7380500 3275100 0 0 1478000 0 0 0 2031 392 1783 12540;12541;12542 8208 8208 1 ELPDLEDLMK Unmodified 1201.59 0.59004036 392 B3KV49;B4DX01;B7Z403;A8K8F0;Q9Y3E8;Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 70.861 70.97 2 0.00068929 31973 20181213_JW_Orientia_Karp_1_3 130.56 70.498 13996000 4339600 3265300 3140400 170080 0 0 3080600 0 2032 392 1783 12543;12544;12545;12546;12547 8209;8210 8210 2 ELPDPQESIQR Unmodified 1310.6466 0.64664404 808 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 43.835 44.236 2 0.014093 14181 20181213_JW_Orientia_Karp_2_2 89.029 21.013 22165000 0 0 0 0 9917800 0 12247000 0 + 2033 808 1784 12548;12549 8211;8212 8211 2 ELPELLQR Unmodified 996.5604 0.56039521 576 B7Z5C1;B4DHD2;Q4W4Y1;Q8WUM4;Q8WUM4-2 DRIP4;PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 52.761 53.01 2 0.025926 21191 20181213_JW_Orientia_Karp_1_1 84.916 47.756 21629000 8127200 0 7765700 3244600 0 2491700 0 0 2034 576 1785 12550;12551;12552;12553 8213;8214 8213 2 ELPEQLQEHAIEDK Unmodified 1677.821 0.82097959 346 B7Z5X3;B7ZLP5;A8K329;Q15424;Q15424-4;Q15424-3;B7Z2H3 SAFB Scaffold attachment factor B1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 42.587 42.9 3 0.040059 14348 20181213_JW_Orientia_Karp_1_3 46.159 10.422 28612000 0 0 15174000 0 819870 1521800 11096000 0 2035 346 1786 12554;12555;12556;12557 8215 8215 1 ELPGFVNYR Unmodified 1093.5556 0.55564418 1611 P20591;F8W8T1;Q8NAA8 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 53.548 53.73 2 0.0075159 21065 20181213_JW_Orientia_Karp_1_3 98.997 33.75 86033000 29992000 27939000 28102000 0 0 0 0 0 2036 1611 1787 12558;12559;12560 8216;8217;8218 8218 3 ELPPDQAEYCIAR Unmodified 1560.7242 0.72424243 1509;133 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;A1L0V1;H0YJW3 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 48.286 48.631 2 0.0062083 17648 20181213_JW_Orientia_Karp_1_2 106.62 61.02 132960000 32723000 39940000 30424000 8327600 4512400 5278100 1126300 10630000 2037 1509;133 1788 12561;12562;12563;12564;12565;12566;12567;12568 8219 8219 1 ELPTAFDYVEFTR Unmodified 1586.7617 0.76167379 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 70.573 70.682 2 0.00056367 32203 20181213_JW_Orientia_Karp_1_1 151.79 99.509 53385000 20062000 0 12689000 3248100 0 3014200 14372000 0 2038 316 1789 12569;12570;12571;12572;12573;12574;12575 8220;8221;8222;8223 8220 4 ELPVNAQNYVR Unmodified 1301.6728 0.67279921 119 B4E1L0;A0A024R5Q7;P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 47.08 47.35 2 0.0050552 17064 20181213_JW_Orientia_Karp_1_2 105.1 44.665 45389000 15872000 17436000 10208000 0 1580200 0 293920 0 2039 119 1790 12576;12577;12578;12579;12580 8224 8224 1 ELQAQIAELQEDFESEK Unmodified 2005.948 0.94803059 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 66.849 66.966 2 2.6564E-06 29388 20181213_JW_Orientia_Karp_1_3 153.7 71.339 42481000 13487000 0 22584000 0 6410600 0 0 0 2040 944 1791 12581;12582;12583 8225;8226;8227 8227 2 ELQELVQYPVEHPDK Unmodified 1822.9101 0.91012895 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 2 1 1 1 1 49.837 50.182 2;3 0.030963 19317 20181213_JW_Orientia_Karp_1_1 88.092 55.084 125430000 46665000 61712000 5820100 0 0 9298200 1305300 632500 2041 1708 1792 12584;12585;12586;12587;12588;12589;12590 8228;8229;8230 8228 3 ELQEMDK Oxidation (M) 907.3957 0.39569765 205 H0YGX7;A0A024RAS5;P52566;F5H2R5;F5H6Q0;F5H3P3;B2R4F3 ARHGDIB Rho GDP-dissociation inhibitor 2 yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 1 1 17.247 17.413 2 0.019159 3011 20181213_JW_Orientia_Karp_1_2 98.523 21.677 4739900 2498000 1650600 0 591250 0 0 0 0 2042 205 1793 12591;12592;12593 8231;8232 8232 155 2 ELQGQIGDITGK Unmodified 1257.6565 0.65648044 1067 Karp_00016 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 45.459 45.804 2 5.6804E-40 16033 20181213_JW_Orientia_Karp_1_2 258.01 172.15 758330000 209070000 223600000 178320000 45131000 0 53301000 1846500 47065000 2043 1067 1794 12594;12595;12596;12597;12598;12599;12600 8233;8234;8235;8236;8237;8238 8234 6 ELQGQIGDITGKDEQTQQTTMNK Oxidation (M) 2578.2181 0.21807422 1067 Karp_00016 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 39.813 40.12 3 5.1593E-20 12811 20181213_JW_Orientia_Karp_1_3 185.23 168.3 132440000 28534000 25514000 15064000 19857000 0 22696000 20778000 0 2044 1067 1795 12601;12602;12603;12604;12605;12606;12607 8239;8240;8241;8242;8243;8244 8241 586 6 ELQGQIGDITGKDEQTQQTTMNK Unmodified 2562.2232 0.2231596 1067 Karp_00016 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 42.564 42.894 3 0.005303 14413 20181213_JW_Orientia_Karp_1_2 92.289 61.152 53724000 8711800 15227000 15132000 7032200 0 0 7620200 0 2045 1067 1795 12608;12609;12610;12611;12612 8245;8246;8247 8245 3 ELQQELQEYEVVTESEK Unmodified 2079.9848 0.98481003 488 B4DHY7;B4E1C9;Q53GS5;B2RBI2;Q96A49 SYAP1 Synapse-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 58.862 59.045 2 5.4029E-189 24426 20181213_JW_Orientia_Karp_1_3 370.69 238.52 28215000 11225000 6972600 10018000 0 0 0 0 0 2046 488 1796 12613;12614;12615;12616 8248;8249;8250;8251 8250 4 ELSAVTFPDIIR Unmodified 1359.7398 0.73981614 1669 P42224;J3KPM9;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 69.323 69.468 2 0.00084737 24808 20181213_JW_Orientia_Karp_3_1 157.75 91.178 94386000 31416000 12248000 13104000 0 5101400 3907600 19251000 9356900 2047 1669 1797 12617;12618;12619;12620;12621;12622;12623 8252;8253 8252 2 ELSDFISYLQR Unmodified 1369.6878 0.68778057 516 B3KQT9;V9HVY3;P30101;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 71.529 71.607 2 1.0631E-12 28777 20181213_JW_Orientia_Karp_2_2 219.8 133.94 234500000 53158000 34511000 32840000 16625000 28139000 17082000 52146000 0 2048 516 1798 12624;12625;12626;12627;12628;12629;12630;12631 8254;8255;8256;8257;8258;8259;8260 8257 7 ELSDIAHR Unmodified 939.47739 0.47739386 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 27.911 28.211 2 0.015134 6647 20181213_JW_Orientia_Karp_3_1 95.531 28.499 22697000 4977900 5026000 3432200 0 841480 763390 7656100 0 2049 1546 1799 12632;12633;12634;12635;12636;12637;12638 8261;8262;8263 8263 3 ELSEQIQR Unmodified 1001.5142 0.5141733 457 E7EQR4;Q6NUR7;B2R6J2;P15311;B7Z437;B7Z5V2;V9HW42 EZR;HEL-S-105 Ezrin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 31.054 31.397 2 0.038383 8974 20181213_JW_Orientia_Karp_1_1 77.923 0 10759000 4855700 0 3395900 0 0 206490 1821300 479380 2050 457 1800 12639;12640;12641;12642;12643 8264 8264 1 ELSGLPSGPSAGSGPPPPPPGPPPPPVSTSSGSDESASR Unmodified 3589.7172 0.71724938 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;B4DNY3;B4DNA3;B4DUZ8 CAP1 Adenylyl cyclase-associated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 60.314 60.563 3 3.3274E-25 26048 20181213_JW_Orientia_Karp_1_1 139.19 116.99 89316000 32070000 31054000 18522000 7669700 0 0 0 0 2051 498 1801 12644;12645;12646;12647;12648 8265;8266;8267;8268;8269;8270;8271;8272 8267 8 ELSLAGNELGDEGAR Unmodified 1529.7322 0.73216458 237 A0A024RC87;P13489;H0YCR7 RNH1 Ribonuclease inhibitor yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 50.874 51.057 2 0.00026572 19247 20181213_JW_Orientia_Karp_1_3 161.87 94.162 92924000 49333000 24640000 18951000 0 0 0 0 0 2052 237 1802 12649;12650;12651 8273;8274 8274 2 ELSSTQQVEVNLPYITADASGPK Unmodified 2446.2227 0.22274889 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 65.892 66.069 3 5.5499E-21 26205 20181213_JW_Orientia_Karp_2_3 190.09 133.19 3267100000 885760000 696320000 813680000 7519200 497070000 180690000 186050000 0 2053 1074 1803 12652;12653;12654;12655;12656;12657;12658;12659;12660 8275;8276;8277;8278;8279;8280;8281;8282 8281 8 ELSSTQQVEVNLPYITADASGPKHLNVK Unmodified 3037.572 0.57202912 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 55.485 55.806 4 0.036476 23054 20181213_JW_Orientia_Karp_1_1 36.872 1.7018 49467000 22296000 0 20007000 4503600 2481100 0 0 180220 2054 1074 1804 12661;12662;12663;12664;12665 8283 8283 1 ELTPQVVSAAR Unmodified 1169.6404 0.64043645 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.562 43.851 2 0.00038208 14872 20181213_JW_Orientia_Karp_1_3 141.88 50.012 111230000 65247000 0 36850000 8392300 0 0 0 737320 2055 19 1805 12666;12667;12668;12669;12670;12671;12672 8284;8285;8286;8287;8288;8289 8286 6 ELTQNPLKK 2 Deamidation (NQ) 1071.5812 0.58119023 458 F8WDY1;F8WC12;B7Z5L3;Q66S35;B2R6L2;Q16877-2;Q16877 PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase yes no 0 2 0 1 By MS/MS 1 43.573 44.022 2 0.02962 14279 20181213_JW_Orientia_Karp_2_1 80.165 10.354 8376700 0 0 0 8376700 0 0 0 0 2056 458 1806 12673 8290 8290 178;1455 0 ELTTEIDNNIEQISSYK Unmodified 1995.9637 0.96368066 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 1 3 60.35 60.631 2;3 2.4148E-31 26582 20181213_JW_Orientia_Karp_1_1 249.58 176.5 1214600000 184040000 222490000 213810000 134060000 221280000 127970000 52562000 58351000 + 2057 798 1807 12674;12675;12676;12677;12678;12679;12680;12681;12682;12683;12684;12685;12686;12687;12688;12689;12690 8291;8292;8293;8294;8295;8296;8297;8298;8299;8300;8301;8302;8303;8304;8305;8306;8307;8308;8309 8293 19 ELTTEIDNNIEQISSYK Deamidation (NQ) 1996.9477 0.94769624 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 3 2 60.195 60.5 2 1.6342E-188 24301 20181213_JW_Orientia_Karp_1_3 365.69 299.36 717610000 143690000 142010000 198320000 71345000 108310000 53306000 626130 0 + 2058 798 1807 12691;12692;12693;12694;12695;12696;12697;12698;12699;12700;12701;12702 8310;8311;8312;8313;8314;8315;8316 8311 276;277 7 ELTVSNNDINEAGVR Deamidation (NQ) 1630.7798 0.77984305 237 A0A024RC87;P13489;E9PMJ3;E9PLZ3;E9PIM9 RNH1 Ribonuclease inhibitor yes no 0 1 0 0 By MS/MS By matching By matching By matching 1 1 1 1 46.623 46.923 2 0.0082639 17058 20181213_JW_Orientia_Karp_1_1 109.72 35.188 16416000 5636400 6402900 3822800 0 0 0 554040 0 2059 237 1808 12703;12704;12705;12706 8317 8317 91 1 ELVAQLIHR Unmodified 1077.6295 0.62947783 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 1 1 44.377 44.67 2;3 0.00024673 15314 20181213_JW_Orientia_Karp_1_3 144.38 88.934 135250000 63455000 42113000 13717000 3292800 3577300 4482400 3479400 1135700 2060 1358 1809 12707;12708;12709;12710;12711;12712;12713;12714;12715;12716;12717;12718 8318;8319;8320;8321;8322;8323;8324;8325 8320 8 ELVESQFAISSISAK Unmodified 1607.8407 0.8406524 1407 Karp_02223 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 59.493 59.743 2 1.24E-19 24875 20181213_JW_Orientia_Karp_1_3 248.67 188.27 51481000 18011000 7586400 16661000 4000500 3022800 2199500 0 0 2061 1407 1810 12719;12720;12721;12722;12723;12724 8326;8327 8327 2 ELVGPPLAETVFTPK Unmodified 1596.8763 0.87630962 1689 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 68.616 68.858 2 0.0031501 30533 20181213_JW_Orientia_Karp_1_3 116.24 74.698 10714000 3901700 3074400 1995900 0 0 0 1005800 736400 2062 1689 1811 12725;12726;12727;12728;12729 8328;8329 8329 2 ELVTQQLPHLLK Unmodified 1417.8293 0.82929985 1957 Q99584;D3DV53 S100A13 Protein S100-A13 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 1 52.881 53.209 2;3 1.8188E-07 18306 20181213_JW_Orientia_Karp_3_2 187.99 115.9 323600000 25735000 46718000 22751000 55596000 70595000 93226000 6670500 2305300 2063 1957 1812 12730;12731;12732;12733;12734;12735;12736;12737;12738;12739;12740;12741;12742 8330;8331;8332;8333;8334;8335;8336;8337 8337 7 ELVVNTK Unmodified 801.45962 0.45961853 1346 Karp_01522 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 29.953 30.456 2 0.039309 7585 20181213_JW_Orientia_Karp_2_1 83.753 12.038 12465000 0 0 0 2382400 3545400 2062000 3770900 704630 2064 1346 1813 12743;12744;12745;12746;12747 8338;8339 8338 2 ELVVTQLGYDTR Unmodified 1392.7249 0.72489436 1760 Q01813;Q01813-2;V9GY25;B1APP6 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.388 55.715 2 7.9586E-09 22947 20181213_JW_Orientia_Karp_1_1 202.65 147.19 36536000 13646000 7293200 12990000 499130 0 1742100 0 365690 2065 1760 1814 12748;12749;12750;12751;12752;12753 8340;8341;8342;8343 8340 4 ELVYPPDYNPEGK Unmodified 1519.7195 0.71947463 48 A0A024R1N4;P12956;B1AHC9;B4DE32;P12956-2;F5H1I8;B4E356;Q6IC76 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 51.491 51.85 2 0.0026613 20246 20181213_JW_Orientia_Karp_1_1 119.34 70.912 142320000 39258000 40147000 35327000 7335300 8951300 0 8862500 2437400 2066 48 1815 12754;12755;12756;12757;12758;12759;12760 8344;8345 8344 2 ELWAVLNGWR Deamidation (NQ) 1243.635 0.63495714 759 C9J0K6;P30626-3;P30626-2;P30626 SRI Sorcin yes no 0 1 0 0 By MS/MS 1 72.011 72.161 2 1.3022E-05 33130 20181213_JW_Orientia_Karp_1_2 166.52 92.215 5038300 0 5038300 0 0 0 0 0 0 2067 759 1816 12761 8346 8346 250 1 ELWILNR Unmodified 942.5287 0.52870115 234;613 A0A024RC61;Q59E93;P15144;B4DV63;B4DP96;B4DPH5;B4DP01 ANPEP Aminopeptidase N no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 60.038 60.263 2 0.012026 23275 20181213_JW_Orientia_Karp_2_3 118.01 38.56 9120200 0 0 6543000 0 0 2577200 0 0 2068 234;613 1817 12762;12763;12764 8347;8348;8349 8349 3 ELWLVIHGR Unmodified 1121.6346 0.63456321 851 Q5HYD9;D6RFH4;H3BUX2;J3KNF8;O43169;J3QR91 DKFZp686M0619;CYB5B Cytochrome b5 type B yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 52.537 52.719 2 0.0077257 20650 20181213_JW_Orientia_Karp_1_2 93.195 36.474 21780000 11275000 3809500 6694700 0 0 0 0 0 2069 851 1818 12765;12766;12767 8350 8350 1 ELYSESDETFDQISK Unmodified 1789.7894 0.78940469 689 B4E3H8;Q9H8L6;B4DEW5 MMRN2 Multimerin-2 yes no 0 0 0 0 By MS/MS 1 53.192 53.443 2 4.2669E-06 19581 20181213_JW_Orientia_Karp_2_3 182.25 106.86 0 0 0 0 0 0 0 0 0 2070 689 1819 12768 8351 8351 1 EMAYIPLDHELK Oxidation (M) 1473.7174 0.71736614 1257 Karp_00937 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.103 47.376 3 0.0015674 16301 20181213_JW_Orientia_Karp_2_3 121.68 59.721 276480000 54340000 92645000 54771000 30442000 11725000 24440000 0 8117000 2071 1257 1820 12769;12770;12771;12772;12773;12774;12775 8352;8353;8354;8355;8356;8357;8358;8359 8358 821 8 EMAYIPLDHELK Unmodified 1457.7225 0.72245152 1257 Karp_00937 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 51.932 52.232 2 0.0034352 20262 20181213_JW_Orientia_Karp_1_2 114.5 58.065 32556000 6197400 8582900 13010000 0 0 0 4766000 0 2072 1257 1820 12776;12777;12778;12779 8360 8360 1 EMAYVPLDNELK Oxidation (M) 1436.6857 0.68573166 1206 Karp_00847 yes yes 0 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.74 53 2 0.011006 19398 20181213_JW_Orientia_Karp_2_3 92.538 51.421 26755000 6061500 7812600 0 3900300 5150200 3830100 0 0 2073 1206 1821 12780;12781;12782;12783;12784 8361 8361 770 1 EMEENFAVEAANYQDTIGR Oxidation (M) 2201.9535 0.95352668 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 4 2 2 2 2 1 57.934 58.235 2;3 7.3958E-102 21786 20181213_JW_Orientia_Karp_2_2 310.74 212.34 3731700000 1145000000 1211000000 924800000 65378000 205150000 139020000 413720 40920000 2074 1571 1822 12785;12786;12787;12788;12789;12790;12791;12792;12793;12794;12795;12796;12797;12798;12799;12800;12801;12802;12803;12804 8362;8363;8364;8365;8366;8367;8368;8369;8370;8371;8372;8373 8371 1189 10 EMEENFAVEAANYQDTIGR Unmodified 2185.9586 0.95861206 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 2 2 2 2 3 61.124 61.452 2;3 7.9008E-165 26342 20181213_JW_Orientia_Karp_1_1 349.18 264.45 3038700000 1246100000 901710000 586220000 54958000 76513000 63498000 15161000 94623000 2075 1571 1822 12805;12806;12807;12808;12809;12810;12811;12812;12813;12814;12815;12816;12817;12818;12819;12820;12821;12822;12823;12824 8374;8375;8376;8377;8378;8379;8380;8381;8382;8383;8384;8385;8386;8387;8388 8374 15 EMEENFAVEAANYQDTIGR Oxidation (M);Deamidation (NQ) 2202.9375 0.93754226 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 1 1 1 2 60.956 61.269 2;3 1.1776E-120 26095 20181213_JW_Orientia_Karp_1_2 319.74 273.04 131780000 44706000 40209000 28378000 3977700 5465200 3689000 300420 5052200 2076 1571 1822 12825;12826;12827;12828;12829;12830;12831;12832;12833;12834;12835;12836;12837 8389;8390;8391;8392;8393;8394 8391 1044;1045 1189 5 EMEENFAVEAANYQDTIGR Deamidation (NQ) 2186.9426 0.94262764 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 62.888 63.08 2 2.5742E-42 27280 20181213_JW_Orientia_Karp_1_1 246.34 204.77 61014000 33272000 5871800 21055000 0 0 0 0 815310 2077 1571 1822 12838;12839;12840;12841;12842 8395;8396;8397;8398 8395 1044;1045 4 EMFLSHLYSGIDEPEIK Unmodified 2006.9659 0.96592926 1321 Karp_01283 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 63.545 63.757 3 0.0039485 27750 20181213_JW_Orientia_Karp_1_2 92.952 19.744 129850000 70670000 33765000 0 0 11324000 10609000 0 3476900 2078 1321 1823 12843;12844;12845;12846;12847 8399 8399 1 EMFLSHLYSGIDEPEIK Oxidation (M) 2022.9608 0.96084389 1321 Karp_01283 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 59.477 59.745 2;3 0.00051911 24853 20181213_JW_Orientia_Karp_1_3 124.5 78.624 206450000 88560000 7731000 56423000 10051000 21944000 21738000 0 0 2079 1321 1823 12848;12849;12850;12851;12852;12853;12854;12855;12856 8400;8401;8402;8403;8404;8405 8401 884 5 EMGMEISENQKKLAMLNAQK 2 Oxidation (M);2 Deamidation (NQ) 2326.0855 0.085468828 263 E9PFR9;B4DMC2;J3KQJ8;A0A024RDM6;Q96N96-5;Q96N96-2;Q96N96-3;Q96N96-4;Q96N96;Q96N96-6 SPATA13 Spermatogenesis-associated protein 13 yes no 0 2 2 2 By MS/MS 1 45.217 45.727 3 0.033468 14402 20181213_JW_Orientia_Karp_3_2 48.053 17.959 2041400 0 0 0 0 0 0 0 2041400 2080 263 1824 12857 8406 8406 1348 0 EMLEDIAILTNGEVITEQLGIK Oxidation (M);Deamidation (NQ) 2445.256 0.25602285 1296 Karp_01187 yes yes 0 1 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 3 3 3 4 1 75.72 75.725 2;3 7.0639E-27 35201 20181213_JW_Orientia_Karp_1_1 213.51 142.15 174280000 48157000 15232000 12231000 6216400 26282000 13047000 51638000 1478600 2081 1296 1825 12858;12859;12860;12861;12862;12863;12864;12865;12866;12867;12868;12869;12870;12871;12872;12873;12874;12875;12876;12877;12878;12879;12880 8407;8408;8409;8410;8411;8412;8413;8414;8415;8416 8409 710 848 8 EMLEDIAILTNGEVITEQLGIK Oxidation (M) 2444.272 0.27200727 1296 Karp_01187 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 75.002 75.022 2;3 0.00061481 34626 20181213_JW_Orientia_Karp_1_3 108.66 83.067 32309000 16253000 0 6246800 0 3005600 0 6803600 0 2082 1296 1825 12881;12882;12883;12884;12885 8417;8418;8419 8417 848 3 EMLLLNLKK Deamidation (NQ) 1101.6468 0.64676738 396 Q495F8;A8K912;Q9BXU7 USP26 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 26 yes no 0 1 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.695 61.015 2 0.025851 26007 20181213_JW_Orientia_Karp_1_2 121.62 44.792 220540000 78126000 27785000 51374000 1727600 21733000 24657000 71847 15071000 2083 396 1826 12886;12887;12888;12889;12890;12891;12892;12893 8420;8421;8422;8423;8424;8425 8420 148 6 EMLQAQLDREAQVR Oxidation (M);3 Deamidation (NQ) 1704.7989 0.79886394 228 A0A024RBS1;E1NZA1;Q92616 GCN1L1;PRIC295 Translational activator GCN1 yes no 0 3 1 1 By MS/MS 1 36.639 36.639 2 0.031735 11634 20181213_JW_Orientia_Karp_1_1 82.494 29.481 6228300 6228300 0 0 0 0 0 0 0 2084 228 1827 12894 8426 8426 1333;1334;1335 1 EMNDAAMFYTNR 2 Oxidation (M) 1493.5915 0.5915137 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;Q01518;Q5T0R1;Q01518-2;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R9;B4DNY3;B4DNA3;B4DUZ8 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 39.495 39.875 2 0.00027145 12121 20181213_JW_Orientia_Karp_2_1 152.67 103.25 37649000 0 12194000 6716900 4397100 1835800 1487300 9788900 1229700 2085 498 1828 12895;12896;12897;12898;12899;12900;12901 8427;8428;8429;8430;8431;8432 8429 319;320 5 EMNGNQQEQEK Oxidation (M);4 Deamidation (NQ) 1353.4878 0.48781971 122 H0YKK5;H0YKS2;A0A024R5V6;A0A024R5T5;Q6ZNA4-2;Q6ZNA4;Q6ZNA4-4;Q6ZNA4-3 RNF111 E3 ubiquitin-protein ligase Arkadia yes no 0 4 1 0 By MS/MS 1 30.274 30.274 2 0.030678 8435 20181213_JW_Orientia_Karp_1_1 54.982 25.172 0 0 0 0 0 0 0 0 0 2086 122 1829 12902 8433 8433 50;1296;1297;1298 1 EMQPTHPIR Oxidation (M) 1123.5444 0.54442757 824;1650;1635 V9HWD6;P31946-2;P31946;B5BU24;D0PNI1;P63104;E7EX29;B0AZS6;P63104-2;B7Z2E6;H0YB80;Q2F831;P27348;B4DMT8;B4DY04;Q53S41 HEL-S-1;YWHAB;YWHAZ;YWHAQ 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein theta no no 0 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 19.518 19.798 3 0.036688 3711 20181213_JW_Orientia_Karp_1_2 69.812 28.93 14891000 0 7416700 3005500 2039200 0 1551300 878050 0 2087 1650;824;1635 1830 12903;12904;12905;12906;12907 8434 8434 1 EMSGMVPK Oxidation (M) 893.39867 0.39867454 1952 Q96RL6-2;Q96RL6 SIGLEC11 Sialic acid-binding Ig-like lectin 11 yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 21.282 21.545 2 0.008859 4193 20181213_JW_Orientia_Karp_3_1 102.77 20.468 3476600 749870 800420 0 0 0 379650 1546700 0 2088 1952 1831 12908;12909;12910;12911 8435;8436 8436 1512 2 EMSLLLPNALSSYMK 2 Oxidation (M) 1727.8474 0.84739403 1162 Karp_00605 yes yes 0 0 2 0 By MS/MS By matching By matching By matching 1 1 1 1 63.89 64.092 2 0.013731 28232 20181213_JW_Orientia_Karp_1_1 84.169 24.627 22108000 7242400 11086000 0 0 0 2530300 0 1249800 2089 1162 1832 12912;12913;12914;12915 8437 8437 694;695 1 EMVDSAPK Oxidation (M) 891.40078 0.40078303 1171 Karp_00625 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 19.907 20.141 2 0.018141 3794 20181213_JW_Orientia_Karp_1_2 113.41 44.236 37376000 31472000 0 0 0 216030 5688000 0 0 2090 1171 1833 12916;12917;12918;12919 8438;8439 8439 724 2 EMVGSNIIDLNK Oxidation (M) 1347.6704 0.67041595 1341 Karp_01515 yes yes 0 0 1 0 By MS/MS By MS/MS 1 1 50.449 50.723 2 2.2895E-29 19029 20181213_JW_Orientia_Karp_1_3 256.38 129.36 0 0 0 0 0 0 0 0 0 2091 1341 1834 12920;12921 8440;8441 8441 904 2 EMVGSNIIDLNK Oxidation (M);Deamidation (NQ) 1348.6544 0.65443153 1341 Karp_01515 yes yes 0 1 1 0 By MS/MS By matching By matching 1 1 1 50.357 50.59 2 0.00011457 19196 20181213_JW_Orientia_Karp_1_2 169.58 72.912 37064000 0 15750000 10636000 0 10678000 0 0 0 2092 1341 1834 12922;12923;12924 8442 8442 786 904 0 EMVLELIR Unmodified 1001.558 0.55795237 638 B4E0X8;B4DWL1;E9PEB5;B4DT31;Q96AE4;Q96AE4-2;Q6PJY1;Q59FU3 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 By MS/MS 1 61.786 62.296 2 0.018975 23214 20181213_JW_Orientia_Karp_3_2 111.82 0 0 0 0 0 0 0 0 0 0 2093 638 1835 12925 8443 8443 1 EMVMPGDHATLSVNLVAPIAMDQGLSFAIR 3 Oxidation (M) 3230.5774 0.57739054 1176;1244 Karp_00632;Karp_00911 no no 0 0 3 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.143 72.243 3 2.5203E-25 29477 20181213_JW_Orientia_Karp_2_1 178.2 137.43 323400000 60827000 39939000 32487000 26106000 0 37406000 89659000 36975000 2094 1176;1244 1836 12926;12927;12928;12929;12930;12931;12932 8444;8445;8446;8447;8448;8449;8450;8451;8452 8447 737;738;739 9 EMVMPGDHATLSVNLVAPIAMDQGLSFAIR 2 Oxidation (M) 3214.5825 0.58247592 1176;1244 Karp_00632;Karp_00911 no no 0 0 2 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 72.64 72.741 3 1.9549E-07 26767 20181213_JW_Orientia_Karp_3_1 113.8 68.464 127630000 0 0 25938000 18975000 0 0 61566000 21148000 2095 1176;1244 1836 12933;12934;12935;12936 8453;8454;8455;8456 8455 737;738;739 4 EMYTLGITNFPIPGEPGFPLNAIYAK Oxidation (M) 2868.4408 0.44080393 445 B4DM63;B2R4D5;O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 76.387 76.388 3 0.0015602 30989 20181213_JW_Orientia_Karp_2_2 74.561 48.555 24412000 0 7307500 6487600 3590700 4270400 2393400 0 362700 2096 445 1837 12937;12938;12939;12940;12941;12942 8457;8458 8458 293 2 EMYVFLDK Unmodified 1043.4998 0.49976879 1179 Karp_00654 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 56.585 56.866 2 0.017382 21217 20181213_JW_Orientia_Karp_2_2 91.9 20.023 17111000 4324500 4714200 0 1358600 2504600 4209500 0 0 2097 1179 1838 12943;12944;12945;12946;12947 8459;8460 8460 2 ENAGEDPGLAR Unmodified 1127.5207 0.52071524 1752 P81605;P81605-2 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 29.646 29.895 2 1.2989E-05 7309 20181213_JW_Orientia_Karp_2_1 173.24 85.059 41285000 14627000 4844900 9449100 12364000 0 0 0 0 2098 1752 1839 12948;12949;12950;12951;12952;12953 8461;8462;8463;8464;8465;8466 8464 6 ENAPAIIFIDEIDAIATK Unmodified 1943.0252 0.025158703 342 A8K2M0;P43686-2;P43686 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 2 1 2 1 76.76 76.759 2;3 0.012241 35831 20181213_JW_Orientia_Karp_1_3 88.282 53.078 36363000 13714000 10403000 7486000 0 0 0 4759100 0 2099 342 1840 12954;12955;12956;12957;12958;12959 8467;8468 8468 2 ENATNGVQQLSKK 3 Deamidation (NQ) 1418.6889 0.68890278 152 A0A024R7V7;Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes no 0 3 0 1 By matching By MS/MS By matching 1 1 1 49.029 49.532 2 0.01684 17242 20181213_JW_Orientia_Karp_2_1 88.495 10.398 121100000 0 55996000 0 61653000 0 0 0 3452500 2100 152 1841 12960;12961;12962 8469 8469 62;1308;1309 0 ENDILLTLHYTK Unmodified 1458.7718 0.77184455 1444 Karp_02422 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 53.499 53.819 3 0.03909 19788 20181213_JW_Orientia_Karp_2_3 48.568 5.725 40055000 0 1984800 9987600 7642100 6732800 13708000 0 0 2101 1444 1842 12963;12964;12965;12966;12967 8470 8470 1 ENFLLAIK Unmodified 946.54877 0.54876789 1152;1259;1145 Karp_00478;Karp_01552;Karp_00538;Karp_00993 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.388 59.638 2 0.00093735 22892 20181213_JW_Orientia_Karp_2_1 183.74 72.705 177250000 102080000 9656300 34494000 1819700 14185000 15014000 0 0 2102 1145;1152;1259 1843 12968;12969;12970;12971;12972;12973;12974 8471;8472;8473;8474;8475;8476;8477 8474 7 ENFNLAIK Unmodified 947.50763 0.50763136 1323;1448;1447;1355;1085 Karp_01308;Karp_02495;Karp_01675;Karp_00200;Karp_02466 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.886 48.136 2 0.0051335 17271 20181213_JW_Orientia_Karp_1_3 120.62 27.359 174860000 30248000 61724000 18864000 27764000 10183000 26072000 0 0 2103 1323;1448;1355;1085;1447 1844 12975;12976;12977;12978;12979;12980;12981 8478;8479;8480;8481;8482;8483;8484 8480 7 ENFQNWLK Unmodified 1077.5243 0.52434406 1662 P37802;P37802-2;X6RJP6;B7Z5A2 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 2 1 1 52.188 52.53 2 0.0039357 21007 20181213_JW_Orientia_Karp_1_1 150.84 71.386 1669300000 301830000 281820000 285500000 324640000 194830000 278700000 1406900 598600 2104 1662 1845 12982;12983;12984;12985;12986;12987;12988;12989;12990;12991;12992;12993;12994 8485;8486;8487;8488;8489 8485 5 ENFQNWLK Deamidation (NQ) 1078.5084 0.50835964 1662 P37802;P37802-2;X6RJP6;B7Z5A2 TAGLN2 Transgelin-2 yes no 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 3 3 1 1 58.761 59.037 2 0.0048579 20959 20181213_JW_Orientia_Karp_2_1 133.81 39.551 84548000 3480800 5907000 14922000 0 22897000 25078000 10619000 1645100 2105 1662 1845 12995;12996;12997;12998;12999;13000;13001;13002;13003;13004;13005;13006;13007;13008 8490;8491;8492;8493;8494;8495;8496;8497;8498;8499 8493 1109;1110 10 ENGLSTSQQVPAQR 3 Deamidation (NQ) 1516.7005 0.7005301 654 J3KNG6;B4DWX0;Q08AE8-4;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8 SPIRE1 Protein spire homolog 1 yes no 0 3 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 23.014 23.457 3 0.014628 4059 20181213_JW_Orientia_Karp_3_2 83.243 37.479 73180000 0 0 0 17604000 21976000 10973000 12577000 10049000 2106 654 1846 13009;13010;13011;13012;13013 8500;8501;8502;8503 8503 228;1557;1558;1559 4 ENGQERVEVEEDGQLK Acetyl (Protein N-term);2 Deamidation (NQ) 1901.849 0.84904483 589 B4DJY6 yes yes 1 2 0 1 By MS/MS 1 47.168 47.319 2 0.033653 15897 20181213_JW_Orientia_Karp_2_2 55.98 16.714 0 0 0 0 0 0 0 0 0 2107 589 1847 13014 8504 8504 1531 1 ENGVYLIDVK Deamidation (NQ) 1149.5918 0.59175492 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9 FLNA;FLJ00119 Filamin-A yes no 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 59.175 59.385 2 0.0019541 25228 20181213_JW_Orientia_Karp_1_1 122.94 68.328 87269000 36280000 10562000 35071000 0 2794900 2561700 0 0 2108 1615 1848 13015;13016;13017;13018;13019;13020;13021 8505;8506;8507 8505 1074 3 ENILEEFSK Unmodified 1107.5448 0.54480473 469 Q0VGD6;B2R7W4;O43390;B4DT28;B4DMB1;Q6MZS5;O43390-4;O43390-3;O43390-2;B4DMD1 HNRPR;HNRNPR;DKFZp686A13234 Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 57.803 58.065 2 0.0050402 24523 20181213_JW_Orientia_Karp_1_1 104.01 38.548 20586000 9256400 0 5910500 0 2470300 2361900 0 587240 2109 469 1849 13022;13023;13024;13025;13026;13027 8508;8509;8510 8508 3 ENLLDFIK Unmodified 990.5386 0.53859714 171 B4DNL5;A0A024R8S5;P07237;F5H8J2;B4DLN6;H7BZ94;B4DUA5;I3L398;B4DJS0;I3NI03;I3L312;Q96C96;H0Y3Z3;I3L4M2 P4HB Protein disulfide-isomerase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 68.54 68.742 2 0.0042154 30771 20181213_JW_Orientia_Karp_1_2 136.27 53.597 62413000 18998000 13461000 19561000 0 5002700 3492800 1137600 759020 2110 171 1850 13028;13029;13030;13031;13032;13033;13034 8511;8512;8513;8514;8515;8516;8517 8513 7 ENLSGLDFSK Unmodified 1108.5401 0.5400537 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.569 49.819 2 0.00021475 17614 20181213_JW_Orientia_Karp_2_3 144.65 42.136 112510000 16568000 30137000 26585000 18892000 10552000 9778400 0 0 2111 1162 1851 13035;13036;13037;13038;13039;13040;13041 8518;8519;8520;8521;8522;8523 8522 6 ENNLKTCPK Acetyl (Protein N-term);2 Deamidation (NQ) 1146.5227 0.52268908 1517 O75132 ZBED4 Zinc finger BED domain-containing protein 4 yes yes 1 2 0 1 By MS/MS 1 14.95 15.248 3 0.036777 2271 20181213_JW_Orientia_Karp_1_3 47.603 14.34 0 0 0 0 0 0 0 0 0 2112 1517 1852 13042 8524 8524 1 ENPRNFSDNQLQEGK Deamidation (NQ) 1775.8075 0.80745479 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 1 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 34.934 35.267 3 0.00092189 9326 20181213_JW_Orientia_Karp_2_2 130.47 89.085 65494000 7647700 24983000 17547000 3751600 0 1756300 9808700 0 2113 1662 1853 13043;13044;13045;13046;13047;13048;13049 8525;8526;8527;8528 8528 1111;1952 4 ENPSMNEELICLRAIR Oxidation (M);2 Deamidation (NQ) 1961.9187 0.9186615 1995 Q9P2D7-4;Q9P2D7;Q9P2D7-5;Q9P2D7-2 DNAH1 Dynein heavy chain 1, axonemal yes no 0 2 1 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 38.489 38.819 2 0.042947 12738 20181213_JW_Orientia_Karp_1_1 61.213 11.581 60345000 17208000 0 15413000 13602000 0 4428900 9693900 0 2114 1995 1854 13050;13051;13052;13053;13054 8529 8529 1 ENPYYDSR Unmodified 1042.4356 0.43558863 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 28.893 29.142 2 0.0166 7439 20181213_JW_Orientia_Karp_1_3 93.162 26.811 15936000 5167500 4273300 5665100 379790 0 450330 0 0 2115 1757 1855 13055;13056;13057;13058;13059 8530 8530 1 ENQELMIQKMNLEEELDELK 3 Deamidation (NQ) 2478.1393 0.13933812 1990 Q9NXG0;Q9NXG0-2 CNTLN Centlein yes no 0 3 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 82.906 82.806 2 0.0097307 38661 20181213_JW_Orientia_Karp_1_1 94.781 46.505 2211000000 4539800 0 0 3697800 2198500000 4263300 0 0 2116 1990 1856 13060;13061;13062;13063;13064 8531;8532;8533 8531 1227;1228;2097;2098 0 ENQGDETQGQQPPQR Unmodified 1710.7558 0.75575357 1745 P67809;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 22.519 22.929 2 0.0024202 4007 20181213_JW_Orientia_Karp_2_2 149.94 106.64 5913100 0 1740200 0 1345500 1431600 522270 463140 410360 2117 1745 1857 13065;13066;13067;13068;13069;13070;13071 8534;8535;8536 8536 3 ENQILGITLRQR 3 Deamidation (NQ) 1442.7729 0.77290718 714 H7C5T3;C9JU82;B7Z2Q3;J3QT39;Q49A88-4;Q49A88-2;Q49A88-3;Q49A88-5;Q49A88-6;Q49A88 CCDC14 Coiled-coil domain-containing protein 14 yes no 0 3 0 1 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 62.844 63.034 2 0.015956 24357 20181213_JW_Orientia_Karp_2_2 107.21 32.594 81739000 22286000 21472000 20506000 0 11210000 6266000 0 0 2118 714 1858 13072;13073;13074;13075;13076 8537;8538 8537 236;1600;1601 2 ENQQATSGPNQPSVR Unmodified 1611.7601 0.76011066 204;1939 A0A024RAV4;A0A024RAQ1;P16989-2;P16989-3;P16989;Q96GD7 CSDA;YBX3 Y-box-binding protein 3 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 26.739 27.099 2 5.8217E-28 6132 20181213_JW_Orientia_Karp_2_1 238.2 128.91 13482000 0 0 1744800 2971700 4318900 1806700 2640300 0 2119 204;1939 1859 13077;13078;13079;13080;13081 8539;8540;8541;8542 8539 4 ENQVLSVR Unmodified 943.50869 0.50869399 149 A0A024R7H5;B4E0Z6;Q10589-2;Q10589 BST2 Bone marrow stromal antigen 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 34.848 35.192 2 0.013215 10428 20181213_JW_Orientia_Karp_1_2 98.629 26.752 48354000 7596700 15854000 17985000 0 1038200 0 3454300 2426000 2120 149 1860 13082;13083;13084;13085;13086;13087 8543;8544;8545 8544 3 ENSAAIYQR Deamidation (NQ) 1051.4934 0.49343786 1106 Karp_00284 yes yes 0 1 0 0 By MS/MS By matching 1 1 31.726 32.175 2 0.030612 8949 20181213_JW_Orientia_Karp_1_2 86.136 46.883 4421400 0 3987100 0 434250 0 0 0 0 2121 1106 1861 13088;13089 8546 8546 460 1 ENSAAIYQR Unmodified 1050.5094 0.50942227 1106 Karp_00284 yes yes 0 0 0 0 By MS/MS 1 29.013 29.212 2 1.0613E-28 7485 20181213_JW_Orientia_Karp_1_3 254.98 168.51 0 0 0 0 0 0 0 0 0 2122 1106 1861 13090 8547 8547 1 ENSDSNDKGSGDQSAAQR Acetyl (Protein N-term);Deamidation (NQ) 1907.7729 0.77291977 1987 Q9NVW2 RLIM E3 ubiquitin-protein ligase RLIM yes yes 1 1 0 1 By MS/MS 1 44.698 44.849 2 0.032185 14538 20181213_JW_Orientia_Karp_2_2 57.175 27.93 1134800 0 0 0 0 1134800 0 0 0 2123 1987 1862 13091 8548 8548 1226 0 ENTNLQKLQAQK 4 Deamidation (NQ) 1417.6937 0.69365381 441 B3KR37;B7Z240;Q7Z5V0;B1AUU8;P42566-2;P42566 EPS15 Epidermal growth factor receptor substrate 15 yes no 0 4 0 1 By MS/MS 1 44.487 44.638 2 0.0043206 14478 20181213_JW_Orientia_Karp_2_2 100.25 31.399 0 0 0 0 0 0 0 0 0 2124 441 1863 13092 8549 8549 171;172;1451;1452 1 ENVIVGQTIPAGTGFYINEIK Unmodified 2262.1896 0.18959827 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.616 69.76 2 3.7507E-48 31656 20181213_JW_Orientia_Karp_1_1 292.76 243.32 270990000 69575000 45979000 65933000 5532000 13578000 7720600 37487000 25183000 2125 1169 1864 13093;13094;13095;13096;13097;13098;13099;13100 8550;8551;8552;8553;8554;8555;8556;8557;8558 8550 9 ENVIVGQTIPAGTGFYINEIKK Unmodified 2390.2846 0.28456129 1169 Karp_00623 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.96 61.247 3 0.0026711 25818 20181213_JW_Orientia_Karp_1_3 89.669 55.247 89602000 21370000 17266000 19867000 5367400 14815000 5451800 0 5465000 2126 1169 1865 13101;13102;13103;13104;13105;13106;13107 8559;8560;8561;8562;8563;8564;8565;8566 8562 5 ENVVQSVTSVAEK Unmodified 1388.7147 0.7147236 1527 Q6FHG5;O76070 SNCG Gamma-synuclein yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.237 48.582 2 8.7286E-25 16702 20181213_JW_Orientia_Karp_2_1 230.81 135.04 173110000 37981000 34867000 40680000 21415000 10054000 13906000 756340 13450000 2127 1527 1866 13108;13109;13110;13111;13112;13113;13114;13115 8567;8568;8569;8570;8571;8572 8569 6 ENYLNLPVNNR Unmodified 1344.6786 0.67861287 1139 Karp_00451 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 52.073 52.373 2 1.8414E-09 20200 20181213_JW_Orientia_Karp_1_3 204.79 119.97 82153000 0 19279000 30351000 11840000 10329000 10354000 0 0 2128 1139 1867 13116;13117;13118;13119;13120;13121 8573;8574;8575;8576;8577 8575 5 ENYLNLPVNNR Deamidation (NQ) 1345.6626 0.66262845 1139 Karp_00451 yes yes 0 1 0 0 By MS/MS 1 56.595 56.945 2 4.4045E-05 23385 20181213_JW_Orientia_Karp_1_2 167.12 107.97 9941800 0 9941800 0 0 0 0 0 0 2129 1139 1867 13122 8578 8578 527 1 EPACDDPDTEQAALAAVDYINK Unmodified 2405.0693 0.069284717 797 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 2 2 3 1 65.577 65.804 2;3 1.129E-06 29155 20181213_JW_Orientia_Karp_1_1 140.47 106.27 347690000 51614000 74090000 36852000 5271300 41085000 20897000 109500000 8375700 + 2130 797 1868 13123;13124;13125;13126;13127;13128;13129;13130;13131;13132;13133;13134;13135;13136;13137 8579;8580;8581;8582;8583;8584;8585;8586;8587;8588;8589 8581 10 EPALNEANLSNLK Unmodified 1411.7307 0.73070802 1772 Q6FHU3;Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.816 49.161 2 0.00022754 17969 20181213_JW_Orientia_Karp_1_3 160.91 92.067 216160000 44747000 62072000 39087000 22823000 12874000 19060000 708550 14790000 2131 1772 1869 13138;13139;13140;13141;13142;13143;13144;13145 8590;8591;8592;8593;8594;8595;8596 8592 7 EPDLNYQASR Unmodified 1191.552 0.55201537 1451 Karp_02532 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 36.777 37.068 2 0.012356 11245 20181213_JW_Orientia_Karp_1_3 89.029 44.652 72500000 32022000 17025000 13680000 0 0 2484100 7288000 0 2132 1451 1870 13146;13147;13148;13149;13150 8597;8598 8598 2 EPELLEPIPYEFMA Oxidation (M) 1692.7957 0.79567604 1674 Q6IAX2;Q59GK9;P46778 RPL21 60S ribosomal protein L21 yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 76.939 76.922 2 0.0022065 36330 20181213_JW_Orientia_Karp_1_2 119.75 91.885 36309000 11152000 8705000 6065900 0 2063200 1528000 6794700 0 2133 1674 1871 13151;13152;13153;13154;13155;13156 8599;8600 8599 1296 2 EPGEYAVHIMCDDEDIK Unmodified 2019.8554 0.85539254 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 FLNB Filamin-B yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 50.721 51.083 3 0.040979 19363 20181213_JW_Orientia_Karp_1_3 44.312 23.923 57199000 12760000 23864000 13441000 0 0 0 5837000 1297500 2134 1520 1872 13157;13158;13159;13160;13161 8601 8601 1 EPLNSDVQYTEVQVSSAESHK Unmodified 2346.0975 0.097548378 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;B7Z8U8 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.944 46.216 3 0.0042583 15766 20181213_JW_Orientia_Karp_2_3 82.709 57.299 179260000 41193000 40035000 55277000 10463000 10280000 11531000 0 10477000 2135 274 1873 13162;13163;13164;13165;13166;13167;13168 8602;8603;8604;8605;8606;8607;8608 8607 7 EPLPPIQQHIWNMLNPPAEVTTK Unmodified 2652.3734 0.37339307 1591 Q53T09;P13010 XRCC5 X-ray repair cross-complementing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 69.394 69.56 3 0.0037522 31046 20181213_JW_Orientia_Karp_1_3 76.329 47.141 21079000 0 6428100 6280100 0 0 0 8370600 0 2136 1591 1874 13169;13170;13171;13172 8609;8610;8611;8612 8612 4 EPPAPAQQLQPQPVAVQGPEPAR Unmodified 2404.2499 0.24990712 848 D6RBL0;D6RD79;Q9HC07 TMEM165 Transmembrane protein 165 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 52.626 52.876 3 0.0029978 20991 20181213_JW_Orientia_Karp_1_1 80.844 59.002 28472000 11417000 0 12759000 0 2493100 0 1801900 0 2137 848 1875 13173;13174;13175;13176 8613 8613 1 EPSEVPTPK Unmodified 982.49713 0.49712625 247 B4DWA0;A0A024RCT9;P17096;P17096-3 HMGA1 High mobility group protein HMG-I/HMG-Y no no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 31.748 32.114 2 0.011529 8867 20181213_JW_Orientia_Karp_1_2 91.069 54.368 113160000 0 58237000 49783000 5138500 0 0 0 0 2138 247 1876 13177;13178;13179 8614;8615 8614 2 EPSINQYNVIIK Unmodified 1416.7613 0.76127986 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By matching 1 1 53.826 54.251 2 0.042095 21369 20181213_JW_Orientia_Karp_1_3 72.643 14.858 13426000 0 0 13049000 0 0 0 377660 0 2139 1058 1877 13180;13181 8616 8616 1 EPVSLENPIGEEDGSCLSDFIEDK Unmodified 2678.1905 0.19052206 1398 Karp_02184 yes yes 0 0 0 0 By matching By MS/MS By matching 1 2 1 72.493 72.554 2;3 6.7726E-06 33004 20181213_JW_Orientia_Karp_1_3 119.2 80.118 56418000 17082000 0 27902000 0 0 0 11434000 0 2140 1398 1878 13182;13183;13184;13185 8617;8618 8617 2 EQADFALEALAK Unmodified 1304.6612 0.66123147 919 F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4;M0QY43;B3KWH4 MYH14 Myosin-14 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 58.778 59.071 2 1.838E-06 24697 20181213_JW_Orientia_Karp_1_2 199.03 0 221310000 94631000 40221000 63876000 3593100 8819100 9294200 870700 0 2141 919 1879 13186;13187;13188;13189;13190;13191;13192 8619;8620;8621;8622;8623;8624 8620 6 EQAHLSLNYFGLSEFDLDK Unmodified 2225.0641 0.064063405 1416 Karp_02253 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 70.733 70.833 3 0.041658 32452 20181213_JW_Orientia_Karp_1_1 62.658 31.622 33150000 4977600 8185600 2607000 0 4802900 2210000 10367000 0 2142 1416 1880 13193;13194;13195;13196;13197;13198 8625 8625 1 EQAPNLVYMVTGNPASDEIK Oxidation (M) 2191.0467 0.046698781 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 58.883 59.065 2 6.7667E-29 24345 20181213_JW_Orientia_Karp_1_3 219.03 175.53 34731000 11222000 11670000 11839000 0 0 0 0 0 2143 1466;1549 1881 13199;13200;13201 8626;8627;8628;8629 8629 1083 4 EQAPNLVYMVTGNPASDEIK Unmodified 2175.0518 0.051784159 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 67.05 67.265 3 2.3963E-22 29693 20181213_JW_Orientia_Karp_1_2 204.78 158.53 33786000 10841000 6661000 13066000 0 0 0 0 3217900 2144 1466;1549 1881 13202;13203;13204;13205 8630;8631 8631 2 EQAWQRPDGQPATR Unmodified 1638.7863 0.78626584 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 30.598 30.928 3 0.0022443 8355 20181213_JW_Orientia_Karp_1_2 124.48 85.48 84555000 34097000 12923000 25382000 0 2436500 0 9716700 0 2145 195 1882 13206;13207;13208;13209;13210 8632 8632 1 EQDIINL Unmodified 843.4338 0.43379771 1456 Karp_02593 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 1 65.253 65.442 1;2 0.0036284 25533 20181213_JW_Orientia_Karp_2_2 168.74 71.14 227650000 64064000 51432000 54913000 5573100 25916000 2043700 23712000 0 2146 1456 1883 13211;13212;13213;13214;13215;13216;13217;13218;13219 8633;8634;8635;8636 8634 4 EQEELLETYLSALGITS Unmodified 1894.9412 0.9411543 1191 Karp_00710 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 81.262 81.146 2 4.9666E-141 37939 20181213_JW_Orientia_Karp_1_1 333.77 247.31 152330000 53886000 0 0 10825000 28257000 30848000 26098000 2421000 2147 1191 1884 13220;13221;13222;13223;13224;13225 8637;8638;8639;8640;8641;8642 8637 6 EQEGEYYCTAFNR Unmodified 1665.6729 0.67293514 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;B7Z8U8 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.448 45.724 2 8.0116E-46 16006 20181213_JW_Orientia_Karp_1_2 267.07 238.49 93960000 22668000 25119000 30568000 5865700 2897600 0 0 6842100 2148 274 1885 13226;13227;13228;13229;13230;13231;13232 8643;8644;8645;8646;8647;8648;8649 8644 7 EQELQQTLQQEQSVLDQLR Unmodified 2312.1608 0.16081734 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 67.128 67.285 2;3 3.3556E-17 29690 20181213_JW_Orientia_Karp_1_2 257.8 193.27 58354000 8651100 22285000 16741000 0 6817700 3858600 0 0 2149 1803 1886 13233;13234;13235;13236;13237;13238;13239 8650;8651;8652 8651 3 EQFLDGDGWTSR Unmodified 1409.6212 0.62115757 1636 Q53G71;V9HW88;P27797;B4DHR1;K7EJB9 HEL-S-99n;CALR Calreticulin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.545 54.86 2 2.2604E-05 20370 20181213_JW_Orientia_Karp_2_3 174.23 92.197 89522000 19597000 16440000 19862000 10480000 10567000 11792000 0 785120 2150 1636 1887 13240;13241;13242;13243;13244;13245;13246 8653;8654;8655;8656;8657;8658 8658 6 EQFNEFR Unmodified 968.43519 0.4351947 1805 V9HW95;Q15293;Q15293-2;Q5J7V8 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 38.325 38.555 2 0.015127 12026 20181213_JW_Orientia_Karp_1_3 111.65 65.696 32541000 12269000 0 11872000 3780200 4430400 190070 0 0 2151 1805 1888 13247;13248;13249;13250;13251 8659;8660;8661;8662 8660 4 EQFVEFR Unmodified 953.46068 0.46068117 514 Q6IAW5;B3KQF5;O43852;O43852-3;B3KNG6;A0A024R755;O43852-2;O43852-4;H0Y875;O43852-15;B3KQK3 CALU Calumenin yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 46.595 46.829 2 0.012566 15633 20181213_JW_Orientia_Karp_2_2 116.9 22.897 57065000 15808000 18639000 3779700 4180400 6426700 8231700 0 0 2152 514 1889 13252;13253;13254;13255;13256;13257 8663 8663 1 EQGQAPITPQQGQALAK Unmodified 1763.9166 0.91661131 1754 Q6ICQ8;P84095 ARHG;RHOG Rho-related GTP-binding protein RhoG yes no 0 0 0 0 By matching By MS/MS 1 1 40.588 40.863 2 0.00014629 13238 20181213_JW_Orientia_Karp_1_3 140.45 85.101 6156700 0 2463000 3693700 0 0 0 0 0 2153 1754 1890 13258;13259 8664 8664 1 EQGVLSFWR Unmodified 1120.5665 0.56654322 1023;1557 I7HJJ0;Q6I9V5;P12236;Q59EI9;P05141;Q6NVC0 SLC25A6;SLC25A5 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 62.155 62.509 2 0.00080563 26563 20181213_JW_Orientia_Karp_1_3 138.98 39.979 28559000 0 0 18452000 0 0 0 0 10107000 2154 1023;1557 1891 13260;13261;13262;13263;13264 8665;8666;8667;8668 8666 4 EQHHNMQSTTQDFSNK Oxidation (M) 1946.8177 0.8177019 1390 Karp_02139 yes yes 0 0 1 0 By MS/MS By matching 1 1 11.308 12.09 3 0.018014 1853 20181213_JW_Orientia_Karp_2_2 81.992 67.153 10807000 0 0 0 0 2145400 0 0 8661300 2155 1390 1892 13265;13266 8669 8669 987 1 EQHHNMQSTTQDFSNK Unmodified 1930.8228 0.82278728 1390 Karp_02139 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 21.863 22.229 3 0.018684 3511 20181213_JW_Orientia_Karp_3_2 65.528 46.539 17232000 1339100 11454000 0 1067700 833070 628230 1274000 636150 2156 1390 1892 13267;13268;13269;13270;13271;13272;13273 8670;8671 8671 2 EQINQLTSYIDASNVYGSTEHEAR Unmodified 2724.2627 0.26271623 1927 Q92626 PXDN Peroxidasin homolog yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 57.564 57.747 3 0.018866 23857 20181213_JW_Orientia_Karp_1_2 50.226 24.73 90384000 32978000 27866000 29540000 0 0 0 0 0 2157 1927 1893 13274;13275;13276 8672 8672 1 EQIVGPLESPVEDSLWPYK Unmodified 2185.0943 0.094300901 2015 Q9Y3Z3;Q9Y3Z3-4;Q9Y3Z3-2;Q59H15;A6NDZ3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 73.258 73.307 2 0.0054315 33552 20181213_JW_Orientia_Karp_1_3 115.91 82.637 57295000 17964000 17694000 21636000 0 0 0 0 0 2158 2015 1894 13277;13278;13279 8673;8674;8675 8675 3 EQKVNKYNEDLEQQIK 4 Deamidation (NQ) 2008.9477 0.94769624 1029 J3KNF5;O15078-2;O15078 CEP290 Centrosomal protein of 290 kDa yes no 0 4 0 2 By MS/MS By MS/MS 1 1 57.451 57.626 2 0.00068144 23810 20181213_JW_Orientia_Karp_1_2 128.57 45.791 18413000 9066800 9345700 0 0 0 0 0 0 2159 1029 1895 13280;13281 8676;8677 8677 378;379;1773;1774;1775 2 EQLAILNSK Unmodified 1014.571 0.5709599 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 45.195 45.462 2 0.0038567 15325 20181213_JW_Orientia_Karp_2_3 109.66 47.117 177470000 52366000 51018000 40082000 0 25372000 7993700 640750 0 2160 1273 1896 13282;13283;13284;13285;13286;13287 8678;8679;8680;8681;8682 8681 5 EQLAILNSK Deamidation (NQ) 1015.555 0.55497548 1273 Karp_01100 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.873 48.225 2 0.004104 16399 20181213_JW_Orientia_Karp_2_2 134.23 45.858 61056000 15754000 26582000 0 9216000 0 7059700 0 2443300 2161 1273 1896 13288;13289;13290;13291;13292;13293;13294 8683;8684;8685;8686;8687;8688;8689;8690 8688 692 8 EQLDNQLDAYMSK Oxidation (M) 1569.6981 0.69808726 2014 X6R700;Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 44.222 44.464 2 3.1123E-11 15356 20181213_JW_Orientia_Karp_1_2 196.27 136.36 27791000 6493000 11119000 7430400 0 1657500 0 0 1091000 2162 2014 1897 13295;13296;13297;13298;13299 8691;8692;8693;8694;8695 8692 1538 5 EQLDNQLDAYMSK Unmodified 1553.7032 0.70317264 2014 X6R700;Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 52.54 52.83 2 0.0009929 20505 20181213_JW_Orientia_Karp_1_3 141.13 107.59 26675000 12377000 7843500 6123100 0 0 0 0 331510 2163 2014 1897 13300;13301;13302;13303;13304 8696;8697 8696 2 EQLESNIAVALGGR Unmodified 1455.7682 0.76815616 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.23 56.589 2 5.3607E-73 21223 20181213_JW_Orientia_Karp_2_1 294.49 239.41 462200000 152150000 0 149410000 50387000 64762000 34151000 6307800 5027400 2164 1458 1898 13305;13306;13307;13308;13309;13310;13311;13312 8698;8699;8700;8701;8702;8703;8704;8705;8706 8702 9 EQLETLVR Unmodified 986.53966 0.53965977 1270 Karp_01078 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 42.988 43.308 2 0.02258 13484 20181213_JW_Orientia_Karp_3_2 86.794 13.546 114060000 45967000 30715000 17900000 4028300 2487600 1623100 10730000 613830 2165 1270 1899 13313;13314;13315;13316;13317;13318;13319;13320 8707 8707 1 EQLGPVTQEFWDNLEK Unmodified 1931.9265 0.92650729 800 CON__P15497;F8W696;A0A024R3E3;P02647 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 69.966 70.118 2 2.8094E-05 27753 20181213_JW_Orientia_Karp_3_2 165.51 108.36 93160000 28124000 21118000 0 0 7177400 3600100 27012000 6127700 + 2166 800 1900 13321;13322;13323;13324;13325;13326 8708;8709;8710;8711 8711 4 EQLPIFK Unmodified 873.496 0.49600404 863 H7BYN3;Q6LES8;E5KSX8;E5KSU5;Q00059;Q00059-2;Q05D31;Q3SX57 TFAM Transcription factor A, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 51.085 51.334 2 0.028854 18170 20181213_JW_Orientia_Karp_2_1 90.986 12.37 59830000 24435000 0 8935700 16101000 0 10358000 0 0 2167 863 1901 13327;13328;13329;13330 8712;8713 8712 2 EQLTPSQIMSLEK Oxidation (M) 1518.76 0.75995923 863 H7BYN3;Q6LES8;E5KSX8;E5KSU5;Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 48.872 49.179 2 0.0050483 18082 20181213_JW_Orientia_Karp_1_2 107.11 18.034 103790000 21750000 38846000 22414000 8854200 4165300 7296200 467760 0 2168 863 1902 13331;13332;13333;13334;13335;13336;13337 8714;8715;8716;8717;8718 8715 494 5 EQMAQQLAEETQGFQR Unmodified 1892.8687 0.86867484 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By matching By MS/MS 1 1 52.691 52.866 2 0.003 20801 20181213_JW_Orientia_Karp_1_2 111.72 76.757 17068000 6985100 10083000 0 0 0 0 0 0 2169 1803 1903 13338;13339 8719 8719 1 EQMQEQERREQQQK Oxidation (M);4 Deamidation (NQ) 1893.801 0.80104878 370 C9K0S7;Q8WYR3;C9J845;C9JBI8;B4DNC7;A8K5K3;O75030-12;O75030-4;O75030-3;O75030-8;O75030-7;O75030-6;O75030-2;O75030-5;O75030 MITF;MITF-C Microphthalmia-associated transcription factor yes no 0 4 1 2 By MS/MS 1 44.922 45.121 2 0.039975 15559 20181213_JW_Orientia_Karp_1_3 44.543 15.778 0 0 0 0 0 0 0 0 0 2170 370 1904 13340 8720 8720 1411;1412;1413;1414;1415;1416 1 EQQEAIEHIDEVQNEIDR Unmodified 2194.0138 0.013818748 162 B2RCX0;A0A024R895;Q5VXV3;Q01105-3;Q01105-4;Q01105-2;Q01105;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.944 49.204 3 1.6569E-05 17305 20181213_JW_Orientia_Karp_2_3 174.18 118.43 247660000 33732000 78322000 41874000 0 27098000 45351000 0 21279000 2171 162 1905 13341;13342;13343;13344;13345;13346 8721;8722;8723;8724;8725;8726 8725 6 EQQEPSSGGSVVPTVQEPK Unmodified 1981.9593 0.95926398 1944 Q96JJ7 TMX3 Protein disulfide-isomerase TMX3 yes yes 0 0 0 0 By MS/MS 1 44.262 44.262 2 6.9811E-10 15667 20181213_JW_Orientia_Karp_1_1 176.19 128.08 3069900 3069900 0 0 0 0 0 0 0 2172 1944 1906 13347 8727 8727 1 EQQIVIQSSGGLSK Unmodified 1472.7835 0.78347187 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z4T3;H0Y8S0 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 42.829 43.189 2 0.0011845 13975 20181213_JW_Orientia_Karp_3_1 164.13 118.13 55606000 17902000 16619000 11296000 3553300 0 0 4834500 1402400 2173 721 1907 13348;13349;13350;13351;13352;13353 8728;8729;8730;8731;8732 8731 4 EQQVNSSSALWTR Unmodified 1504.727 0.72701962 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 2 3 1 43.688 44.054 2 2.3477E-26 15457 20181213_JW_Orientia_Karp_1_1 240.8 168.15 774370000 215260000 157400000 217830000 57574000 28278000 26980000 61023000 10019000 2174 1251 1908 13354;13355;13356;13357;13358;13359;13360;13361;13362;13363;13364;13365 8733;8734;8735;8736;8737;8738 8733 6 EQQVNSSSALWTR Deamidation (NQ) 1505.711 0.71103521 1251 Karp_00928 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 2 3 2 1 47.273 47.652 2 4.5776E-11 16694 20181213_JW_Orientia_Karp_1_2 201 117.22 319440000 0 113980000 75693000 45357000 29911000 27623000 5058100 21816000 2175 1251 1908 13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376;13377;13378;13379 8739;8740;8741;8742;8743;8744;8745;8746;8747 8740 648 9 EQSILELGSLLAK Unmodified 1399.7922 0.79224564 1489 O00231;O00231-2;J3QRY4;B4DTS5 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 72.476 72.551 2 0.014393 33358 20181213_JW_Orientia_Karp_1_1 92.112 44.406 50227000 14355000 14988000 12049000 0 0 0 8836200 0 2176 1489 1909 13380;13381;13382;13383 8748;8749 8748 2 EQTSHQIIQQMSLSNK Oxidation (M);2 Deamidation (NQ) 1888.8837 0.8836562 1910 Q8N8G6 C15orf54 Putative uncharacterized protein C15orf54 yes yes 0 2 1 0 By MS/MS By matching 1 1 54.862 55.442 2 0.040562 20589 20181213_JW_Orientia_Karp_2_1 52.928 15.601 24719000 0 0 0 24380000 0 0 0 339180 2177 1910 1910 13384;13385 8750 8750 2044;2045 0 EQVANSAFVER Unmodified 1248.6099 0.6098646 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 37.985 38.285 2 0.00015771 12460 20181213_JW_Orientia_Karp_1_1 157.75 78.033 53471000 18163000 14503000 17349000 0 0 0 3457500 0 2178 251 1911 13386;13387;13388;13389 8751;8752 8751 2 EQVINAGGLFVIGTER Unmodified 1701.905 0.90498399 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 67.66 67.868 2 7.4947E-09 29944 20181213_JW_Orientia_Karp_1_3 222.56 173.37 32797000 5773600 7660100 4914300 666190 3917800 1272700 5107300 3484600 2179 1374 1912 13390;13391;13392;13393;13394;13395;13396;13397 8753;8754;8755;8756;8757;8758 8755 6 EQVTNVGGAVVTGVTAVAQK Unmodified 1927.0375 0.037454724 874 H6UYS7;Q4W5L2;H6UYS5;E7EPV7;H6UYS0;P37840-2;P37840-3;P37840 SNCA Alpha-synuclein yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 2 2 2 1 56.357 56.708 2;3 4.6747E-17 21079 20181213_JW_Orientia_Karp_2_2 188.9 143.45 331680000 115520000 100980000 28691000 28408000 29634000 27631000 201880 617860 2180 874 1913 13398;13399;13400;13401;13402;13403;13404;13405;13406;13407;13408;13409;13410;13411 8759;8760;8761;8762;8763;8764;8765 8762 6 EQWANLEQLSAIR Unmodified 1556.7947 0.79470526 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 63.014 63.274 2 2.2404E-11 27012 20181213_JW_Orientia_Karp_1_3 202 106.52 45521000 14052000 15103000 11403000 264670 0 3552500 0 1145800 2181 506 1914 13412;13413;13414;13415;13416;13417 8766;8767;8768 8768 3 EQYGQYALAVR Unmodified 1296.6463 0.64625011 1762 Q02413 DSG1 Desmoglein-1 yes yes 0 0 0 0 By MS/MS By matching 1 1 46.981 47.182 2 0.010269 15867 20181213_JW_Orientia_Karp_2_2 95.502 28.287 21826000 0 0 0 0 11607000 10219000 0 0 2182 1762 1915 13418;13419 8769 8769 1 ERDFTSLENTVEER Unmodified 1723.8013 0.80130678 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 1 By MS/MS 1 45.712 45.712 2 0.0041925 16417 20181213_JW_Orientia_Karp_1_1 153.81 79.968 0 0 0 0 0 0 0 0 0 2183 224 1916 13420 8770 8770 1 ERDVYEELLTQAEIQGNINK Unmodified 2361.1812 0.18121843 235 A4QPB0;A0A024RC65;P46940;Q6P1N4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 1 By MS/MS By matching 1 1 62.968 63.067 3 0.00018047 27530 20181213_JW_Orientia_Karp_1_1 124.98 84.545 33439000 17568000 0 15871000 0 0 0 0 0 2184 235 1917 13421;13422 8771 8771 1 EREINQAQAYR Unmodified 1376.6797 0.6796755 1105 Karp_00283 yes yes 0 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 24.331 24.683 3 0.0045013 5471 20181213_JW_Orientia_Karp_3_1 108.31 66.93 88338000 6134900 31225000 0 13714000 13780000 4761400 11632000 7091500 2185 1105 1918 13423;13424;13425;13426;13427;13428;13429 8772;8773;8774;8775;8776 8775 5 ERESLQQMAEVTR Oxidation (M) 1591.7624 0.76241885 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314;A2VCQ4;K7EPW7;K7EKX1;K7EJ70 PRKCSH Glucosidase 2 subunit beta yes no 0 0 1 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 28.31 28.6 3 0.01952 6249 20181213_JW_Orientia_Karp_2_2 99.844 12.933 55677000 33086000 0 9354200 0 5169400 5697800 2370200 0 2186 588 1919 13430;13431;13432;13433;13434 8777 8777 359 0 ERIDQIVQR Unmodified 1155.636 0.63601977 1110 Karp_00292 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 2 2 1 1 1 2 34.801 35.178 2;3 0.010387 9311 20181213_JW_Orientia_Karp_2_2 94.309 34.96 93884000 9116600 42226000 28327000 2022300 1980400 0 6628400 3583800 2187 1110 1920 13435;13436;13437;13438;13439;13440;13441;13442;13443;13444 8778;8779 8779 2 ERLEQQVPVNQVFGQDEMIDVIGVTK Unmodified 2970.5121 0.5120714 524 H7C3M2;H7C422;B3KS36;Q8TBW1;Q96QL0;P39023;Q49AJ9;B5MCW2;Q9BT63;Q9NY85;G5E9G0 RPL3;rpl3 60S ribosomal protein L3 yes no 0 0 0 1 By MS/MS By MS/MS By matching 1 1 1 69.331 69.447 3 7.8305E-05 30908 20181213_JW_Orientia_Karp_1_3 109.23 79.958 32088000 15346000 0 10133000 0 0 0 6609300 0 2188 524 1921 13445;13446;13447 8780;8781 8781 2 ERMELLQQAQQRIR 4 Deamidation (NQ) 1801.8992 0.89924668 1947 Q96N16-4;Q96N16-5;Q96N16-2 yes no 0 4 0 2 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 21.999 22.315 3 0.023814 4329 20181213_JW_Orientia_Karp_2_1 74.78 11.118 44928000 10814000 11329000 8531800 4376300 3697100 3652200 0 2527500 2189 1947 1922 13448;13449;13450;13451;13452;13453;13454 8782 8782 2066;2067;2068;2069 1 ERNGLSLAALK Deamidation (NQ) 1171.6561 0.65608651 1604 P16401 HIST1H1B Histone H1.5 yes yes 0 1 0 1 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 45.509 45.701 3 0.00016151 16316 20181213_JW_Orientia_Karp_1_1 161.19 94.622 3038900000 1023500000 1244000000 770830000 0 0 623980 0 0 2190 1604 1923 13455;13456;13457;13458;13459;13460;13461 8783;8784;8785;8786;8787 8783 1067 3 ERNGLSLAALKK Deamidation (NQ) 1299.751 0.75104953 1604 P16401 HIST1H1B Histone H1.5 yes yes 0 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 1 36.332 36.657 3 0.0001619 10808 20181213_JW_Orientia_Karp_3_1 173.04 93.966 97617000 44575000 17823000 19700000 1475100 1728600 1822400 10492000 0 2191 1604 1924 13462;13463;13464;13465;13466;13467;13468;13469 8788;8789;8790;8791;8792 8792 1067 5 ERPPAPSSFVFQEETK Unmodified 1847.9054 0.90537792 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 47.537 47.838 3 1.8216E-06 17094 20181213_JW_Orientia_Karp_1_3 172.09 127.49 143130000 9520100 34734000 31617000 25084000 10065000 11276000 0 20829000 2192 1764 1925 13470;13471;13472;13473;13474;13475;13476 8793;8794 8794 2 ERVEAVNMAEGIIHDTETK Oxidation (M) 2157.0372 0.037196727 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z4T3;A1XP52 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 1 1 By MS/MS 1 42.65 42.849 3 0.034479 14273 20181213_JW_Orientia_Karp_1_3 70.114 18.627 0 0 0 0 0 0 0 0 0 2193 721 1926 13477 8795 8795 1 ERVEAVNMAEGIIHDTETK Unmodified 2141.0423 0.042282105 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z4T3;A1XP52 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 50.298 50.559 4 0.022402 17793 20181213_JW_Orientia_Karp_2_2 56.746 13.696 65792000 20934000 18708000 0 11422000 9102600 5625700 0 0 2194 721 1926 13478;13479;13480;13481;13482 8796 8796 1 ESADPLGAWLQDAR Unmodified 1527.7318 0.73177065 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 68.677 68.802 2 0.0048108 30828 20181213_JW_Orientia_Karp_1_2 128.08 66.488 20344000 9892000 10452000 0 0 0 0 0 0 2195 1803 1927 13483;13484 8797;8798;8799 8799 3 ESAEEAWGTEEAPAPAPAR Unmodified 1967.8861 0.88609904 1871 Q6QNY0 BLOC1S3 Biogenesis of lysosome-related organelles complex 1 subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 48.171 48.481 2 1.709E-12 17716 20181213_JW_Orientia_Karp_1_2 184.96 139.85 34349000 7596700 8113600 7171400 4859400 2516800 0 0 4091500 2196 1871 1928 13485;13486;13487;13488;13489;13490 8800;8801;8802;8803 8801 4 ESDILLVK Unmodified 915.5277 0.5276981 1297 Karp_01188 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 1 1 1 49.922 50.218 1;2 0.0089118 19090 20181213_JW_Orientia_Karp_1_1 107.32 22.959 8501300000 1039700000 1816000000 1430700000 2426400000 566650000 1219800000 1424900 569020 2197 1297 1929 13491;13492;13493;13494;13495;13496;13497;13498;13499;13500 8804;8805;8806;8807 8804 3 ESDILLVKS Unmodified 1002.5597 0.55972651 1297 Karp_01188 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 49.659 49.986 2 0.0022441 18726 20181213_JW_Orientia_Karp_1_2 157.68 102.15 48658000 12859000 16619000 11965000 4754600 0 1861200 0 599100 2198 1297 1930 13501;13502;13503;13504;13505;13506 8808;8809;8810 8809 3 ESDQGAYTCEAMNAR Oxidation (M) 1717.6672 0.66719784 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 1 0 By MS/MS By matching 1 1 30.311 30.41 2 0.010408 8479 20181213_JW_Orientia_Karp_1_1 93.258 34.19 2150200 1686200 0 464010 0 0 0 0 0 2199 195 1931 13507;13508 8811 8811 147 1 ESEAVEWQQK Unmodified 1232.5673 0.56733108 1630 V9HWC0;P26038;B7Z4C7 HEL70;MSN Moesin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 35.491 35.85 2 4.1829E-06 11204 20181213_JW_Orientia_Karp_1_1 174.02 32.505 54915000 23477000 0 11844000 6117200 4324300 2370000 5407000 1375900 2200 1630 1932 13509;13510;13511;13512;13513;13514;13515 8812;8813;8814;8815 8812 4 ESFFNDISGIYLEEHNK Unmodified 2040.9429 0.94288564 1396 Karp_02152 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 64.156 64.286 3 0.040332 27648 20181213_JW_Orientia_Karp_1_3 85.28 57.068 190420000 49313000 64240000 40094000 0 23570000 13201000 0 0 2201 1396 1933 13516;13517;13518;13519;13520 8816 8816 1 ESFFNDISGIYLEEHNKK Unmodified 2169.0378 0.037848654 1396 Karp_02152 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 56.731 56.942 4 0.012185 23800 20181213_JW_Orientia_Karp_1_1 68.329 40.371 110160000 41582000 13045000 21903000 0 16673000 16957000 0 0 2202 1396 1934 13521;13522;13523;13524;13525 8817;8818;8819;8820 8817 4 ESGVGQTDWSGVEAGEFLK Unmodified 1994.9222 0.92215019 106 A0A024R542;Q9C0C2;Q9C0C2-2 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 64.526 64.71 2 7.7711E-07 28226 20181213_JW_Orientia_Karp_1_2 151.56 64.784 21045000 0 11170000 0 0 4645200 5229400 0 0 2203 106 1935 13526;13527;13528 8821 8821 1 ESGVVAGYPTIDFK Unmodified 1481.7402 0.74021007 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.479 59.772 2 1.6258E-11 23080 20181213_JW_Orientia_Karp_2_3 196.24 109.36 1336100000 527300000 264400000 274840000 27329000 111790000 130220000 207140 0 2204 1094 1936 13529;13530;13531;13532;13533;13534;13535 8822;8823;8824;8825;8826;8827;8828;8829 8828 8 ESIFTASQDTSSDNLVNEFYQK Unmodified 2522.1449 0.1448925 1125 Karp_00328 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.352 68.582 3 2.1958E-23 26877 20181213_JW_Orientia_Karp_3_2 203.64 153.22 252210000 69047000 24119000 58153000 7254500 39685000 0 31724000 22231000 2205 1125 1937 13536;13537;13538;13539;13540;13541;13542 8830;8831;8832;8833;8834;8835;8836;8837;8838 8837 9 ESIGSTILANLADK Unmodified 1430.7617 0.76167379 1201 Karp_00820 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 64.801 64.994 2 7.7908E-18 25213 20181213_JW_Orientia_Karp_2_2 221.09 143.8 238540000 5590800 128000000 0 0 67099000 36994000 0 859340 2206 1201 1938 13543;13544;13545;13546;13547;13548;13549 8839;8840;8841;8842;8843 8840 5 ESIVDVLCK Unmodified 1061.5427 0.54269624 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 56.982 57.283 2 0.00078503 23217 20181213_JW_Orientia_Karp_1_3 145.16 54.786 972080000 150470000 72646000 389540000 28518000 88997000 156170000 0 85742000 2207 1068;1081;1083;1086;1151;1356 1939 13550;13551;13552;13553;13554;13555;13556 8844;8845;8846;8847;8848;8849 8845 6 ESMDQAMK Oxidation (M) 954.37867 0.37866738 1067 Karp_00016 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 17.931 18.161 2 0.010805 3066 20181213_JW_Orientia_Karp_2_1 98.997 46.36 5398500 1647300 1462800 1600400 533780 0 0 154200 0 2208 1067 1940 13557;13558;13559;13560;13561 8850;8851;8852;8853 8853 587 4 ESMTDAILQTDQTLTEK Oxidation (M) 1938.9092 0.90920225 678 B4E1L5;Q5D1D5;P32455 GBP1 Interferon-induced guanylate-binding protein 1 yes no 0 0 1 0 By MS/MS By matching 1 1 52.722 52.996 2 0.026992 20802 20181213_JW_Orientia_Karp_1_2 73.927 40.839 8632600 0 5445600 3187000 0 0 0 0 0 2209 678 1941 13562;13563 8854 8854 416 1 ESNINIISIK Unmodified 1129.6343 0.63428844 1139 Karp_00451 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 52.18 52.43 2 3.2986E-05 20429 20181213_JW_Orientia_Karp_1_2 159.34 79.623 50118000 9337100 10624000 12469000 7142000 3932500 6613700 0 0 2210 1139 1942 13564;13565;13566;13567;13568;13569 8855;8856;8857 8855 3 ESPESEGPIYEGLIL Unmodified 1631.793 0.7930335 1827 Q53FR4;Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 76.432 76.432 2 1.2556E-05 36007 20181213_JW_Orientia_Karp_1_2 163.88 113.59 21777000 7447800 8306500 0 0 0 0 6022500 0 2211 1827 1943 13570;13571;13572 8858;8859;8860 8859 3 ESSTVFELK Unmodified 1038.5233 0.523341 747 B8ZZU8;I3L0M9;Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 47.194 47.464 2 0.038793 17489 20181213_JW_Orientia_Karp_1_1 72.879 5.8472 46811000 15400000 10621000 7508900 7727500 0 5553500 0 0 2212 747 1944 13573;13574;13575;13576;13577 8861 8861 1 ESTGAQVQVAGDMLPNSTER Oxidation (M) 2104.9695 0.96951109 1806;594 B4DLC0;Q15366-6;Q15366-3;Q15366;Q15366-2;F8VXH9;B4DRD7;H3BRU6;F8VZX2;Q15366-7;B4DXP5;Q15366-4;Q15366-5;F8W0G4;J3QT27;Q5MJP6;E9PFP8;P57721-2;P57721-3;P57721-5;P57721-4;P57721;Q53SS8;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 44.478 44.768 2 8.1757E-62 15922 20181213_JW_Orientia_Karp_1_1 270.99 177.34 33591000 10760000 11487000 7452300 0 0 970540 2920700 0 2213 594;1806 1945 13578;13579;13580;13581;13582 8862;8863;8864;8865;8866;8867 8863 365 6 ESTGAQVQVAGDMLPNSTER Unmodified 2088.9746 0.97459647 1806;594 B4DLC0;Q15366-6;Q15366-3;Q15366;Q15366-2;F8VXH9;B4DRD7;H3BRU6;F8VZX2;Q15366-7;B4DXP5;Q15366-4;Q15366-5;F8W0G4;J3QT27;Q5MJP6;E9PFP8;P57721-2;P57721-3;P57721-5;P57721-4;P57721;Q53SS8;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 2 1 1 51.617 51.8 2;3 1.3137E-28 19885 20181213_JW_Orientia_Karp_1_3 252.25 199.86 41306000 14259000 16063000 10983000 0 0 0 0 0 2214 594;1806 1945 13583;13584;13585;13586 8868;8869;8870;8871 8871 4 ESTGAQVQVAGDMLPNSTER Oxidation (M);Deamidation (NQ) 2105.9535 0.95352668 1806;594 B4DLC0;Q15366-6;Q15366-3;Q15366;Q15366-2;F8VXH9;B4DRD7;H3BRU6;F8VZX2;Q15366-7;B4DXP5;Q15366-4;Q15366-5;F8W0G4;J3QT27;Q5MJP6;E9PFP8;P57721-2;P57721-3;P57721-5;P57721-4;P57721;Q53SS8;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 0 1 1 0 By MS/MS By MS/MS 1 1 47.073 47.553 2 0.026393 15240 20181213_JW_Orientia_Karp_3_2 81.185 46.225 0 0 0 0 0 0 0 0 0 2215 594;1806 1945 13587;13588 8872;8873 8873 208 365 2 ESTLHLVLR Unmodified 1066.6135 0.61349341 1841 Q59EM9;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;Q5RKT7;B2RDW1;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q9UFQ0;Q96C32;Q96MH4;L8B4I8;L8B196;Q96H31;L8B4R0;F5H041;A8K674;L8B4Z6;L8B4M0;L8B4J3;Q66K58;P62987;P62979;P0CG47;P0CG48;M0R1M6;Q8WYN9;M0R2S1;J3QLP7;J3QRK5;K7EMA8;J3KSM4 UBB;RPS27A;UBC;UBA52;HEL112;DKFZp434K0435;UbC;UBBP4 Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 1 42.864 43.215 2 0.00071976 14719 20181213_JW_Orientia_Karp_1_2 151.04 84.001 1587600000 311480000 812980000 246120000 60680000 24315000 0 119090000 12929000 2216 1841 1946 13589;13590;13591;13592;13593;13594;13595;13596;13597;13598;13599 8874;8875;8876;8877;8878;8879;8880;8881 8875 8 ESVFFAEPPFK Unmodified 1296.639 0.63903946 609 B4DNL3;Q9P0K7-4;Q9P0K7-3;Q9P0K7;Q9P0K7-2 RAI14 Ankycorbin yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 65.127 65.296 2 0.015474 28954 20181213_JW_Orientia_Karp_1_1 87.913 45.565 9151600 3731900 0 4940700 0 0 0 0 479030 2217 609 1947 13600;13601;13602 8882 8882 1 ESVLNSSVK Deamidation (NQ) 962.49204 0.49204087 328 A7E2F7;Q9UDT6-2;Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 yes no 0 1 0 0 By matching By MS/MS By matching By matching 1 1 1 1 22.435 22.698 2 0.030153 4760 20181213_JW_Orientia_Karp_1_3 84.743 11.127 4398700 0 1466500 2001400 0 432820 497920 0 0 2218 328 1948 13603;13604;13605;13606 8883 8883 123 0 ESVPEFPLSPPK Unmodified 1325.6867 0.68671794 282 A2A2D0;B5BU83;P16949;P16949-2;Q59G27;Q96CE4 STMN1 Stathmin yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 59.125 59.375 2 0.0015072 22739 20181213_JW_Orientia_Karp_2_1 127.76 63.5 205310000 30047000 32290000 9106400 49491000 33787000 50593000 0 0 2219 282 1949 13607;13608;13609;13610;13611;13612 8884;8885 8884 2 ESVPISDTIIPAVPPPTDLR Unmodified 2116.1416 0.14158544 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-10;P02751-4;Q6N084;Q59G22;Q5CZ99 FN1;DKFZp686L11144;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 72.444 72.505 2;3 0.00023976 32975 20181213_JW_Orientia_Karp_1_3 119.62 41.875 1222800000 332710000 305770000 264990000 15800000 58260000 40779000 180470000 23990000 2220 85 1950 13613;13614;13615;13616;13617;13618;13619;13620;13621;13622;13623;13624;13625;13626 8886;8887;8888;8889;8890;8891;8892 8888 7 ESVREWEMQFKEK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1783.8087 0.80870034 828 D3DNX8 PGRMC2 yes yes 1 1 1 2 By MS/MS By matching 1 1 47.579 48.01 3 0.035151 16560 20181213_JW_Orientia_Karp_2_3 45.357 26.683 6903200 0 0 0 0 0 1199200 0 5704000 2221 828 1951 13627;13628 8893 8893 1667 0 ESYSIYVYK Unmodified 1150.5546 0.55464113 1624;1817 P23527;P33778;Q8N257;Q6DRA6;Q6DN03;Q16778;A0A024RCJ2;P06899 HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B;Histone H2B type 1-J no no 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.178 48.524 2 0.0037612 15744 20181213_JW_Orientia_Karp_3_2 110.12 53.573 9664300000 2782900000 3695800000 2325200000 292800000 7008700 106860000 43142 453690000 2222 1624;1817 1952 13629;13630;13631;13632;13633;13634;13635;13636 8894;8895;8896;8897 8896 4 ESYSVYVYK Unmodified 1136.539 0.53899107 449 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 44.643 44.964 2 0.010452 16042 20181213_JW_Orientia_Karp_1_1 93.195 41.408 24113000000 8366900000 8633200000 6029100000 140560000 194670000 198270000 547250000 2815500 2223 449 1953 13637;13638;13639;13640;13641;13642;13643;13644 8898;8899;8900;8901;8902;8903 8898 6 ESYVETELIFALAK Unmodified 1611.8396 0.83958976 1757 Q00610-2;Q00610;J3KS13 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 73.526 73.55 2 7.1183E-06 34004 20181213_JW_Orientia_Karp_1_1 195.51 151.09 39557000 15841000 15666000 7648600 401600 0 0 0 0 2224 1757 1954 13645;13646;13647;13648 8904;8905 8904 2 ETADTDTADQVMASFK Unmodified 1728.7512 0.75124504 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;A1L0V1;H0YJW3 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 1 56.476 56.777 2 1.0182E-62 23252 20181213_JW_Orientia_Karp_1_2 277.82 211.19 165220000 66539000 40159000 49197000 4102700 2984800 2107500 0 129930 2225 133 1955 13649;13650;13651;13652;13653;13654;13655;13656 8906;8907;8908;8909 8907 4 ETADTDTADQVMASFK Oxidation (M) 1744.7462 0.74615966 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;A1L0V1;H0YJW3 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 1 45.162 45.464 2 2.6253E-114 14330 20181213_JW_Orientia_Karp_3_2 328.43 254.59 138350000 48349000 28994000 29318000 0 3644600 8017400 8668900 11363000 2226 133 1955 13657;13658;13659;13660;13661;13662;13663;13664 8910;8911;8912;8913;8914;8915 8915 112 6 ETDLLLDDSLVSIFGNR Unmodified 1905.9684 0.96837211 1645 V9HW35;P30044-2;P30044;P30044-3;P30044-4 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.633 76.627 2 1.0996E-67 36108 20181213_JW_Orientia_Karp_1_2 276.12 221.35 121590000 35327000 16749000 14788000 11158000 15474000 5373400 20352000 2369200 2227 1645 1956 13665;13666;13667;13668;13669;13670;13671;13672 8916;8917;8918;8919;8920;8921;8922;8923 8917 8 ETGEHLVHVK Unmodified 1147.5986 0.59857163 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 21.56 21.9 2 0.0054414 4408 20181213_JW_Orientia_Karp_1_3 101.72 40.962 7983100 2694400 2216900 2643100 0 0 0 0 428740 2228 1615 1957 13673;13674;13675;13676;13677 8924;8925;8926 8924 3 ETIELVHTEPTDVAQLPSR Unmodified 2134.0906 0.090612506 672 D6RG15;B4E0A1;H0Y858;Q6IBS0 TWF2 Twinfilin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 54.337 54.487 3 3.2277E-05 21528 20181213_JW_Orientia_Karp_1_3 135.57 86.685 44969000 29245000 0 12379000 0 0 3344800 0 0 2229 672 1958 13678;13679;13680;13681;13682 8927;8928;8929;8930;8931 8930 5 ETIPLQETSLYTQDR Unmodified 1792.8843 0.88430813 1694 P50897;E9PIA8;P50897-2;E9PSE5 PPT1 Palmitoyl-protein thioesterase 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 55.879 56.169 2 0.040596 22461 20181213_JW_Orientia_Karp_1_3 70.68 38.182 117960000 29178000 29554000 20950000 0 22844000 0 15435000 0 2230 1694 1959 13683;13684;13685;13686;13687 8932 8932 1 ETLAQLQQEFQR Unmodified 1489.7525 0.75250609 1503 Q5STK2;O15212 PFDN6 Prefoldin subunit 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 55.836 56.193 2;3 5.2536E-52 19619 20181213_JW_Orientia_Karp_3_2 284.47 207.79 412020000 72059000 62345000 48193000 0 54039000 79917000 87956000 7510400 2231 1503 1960 13688;13689;13690;13691;13692;13693;13694;13695;13696 8933;8934;8935;8936;8937;8938;8939;8940 8940 8 ETLPLLEFYK Unmodified 1251.6751 0.67509062 1222 Karp_00889 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 71.007 71.107 2 0.005627 32385 20181213_JW_Orientia_Karp_1_2 94.85 49.768 168880000 34957000 31288000 22301000 5770900 0 15454000 59110000 0 2232 1222 1961 13697;13698;13699;13700;13701;13702;13703;13704;13705 8941;8942;8943;8944;8945;8946;8947 8941 7 ETLQHSPLIDK Unmodified 1279.6772 0.67721588 1251 Karp_00928 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 34.694 34.984 2 0.0050948 9981 20181213_JW_Orientia_Karp_3_1 96.756 16.301 134020000 32447000 28329000 49701000 0 6758900 0 16784000 0 2233 1251 1962 13706;13707;13708;13709;13710 8948 8948 1 ETMQSLNDR Oxidation (M) 1108.4819 0.48188689 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9;CON__Q92764;C4AM86;CON__Q497I4;A0A024R1T2;Q92764 KRT18;KRT35;KRTHA5 Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5 yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 20.62 20.885 2 0.0035727 3934 20181213_JW_Orientia_Karp_2_1 107.57 44.009 8199300 3752700 1459900 877200 727330 364690 379010 638500 0 2234 208 1963 13711;13712;13713;13714;13715;13716;13717 8949;8950 8950 158 2 ETNLDSLPLVDTHSK Unmodified 1667.8366 0.83662965 1571 V9HWE1;P08670;Q53HU8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 49.668 49.949 3 0.027725 19135 20181213_JW_Orientia_Karp_1_1 87.863 63.363 76784000 23385000 22993000 20064000 0 0 8826800 0 1515000 2235 1571 1964 13718;13719;13720;13721;13722 8951 8951 1 ETNLDSLPLVDTHSKR Unmodified 1823.9377 0.93774068 1571 V9HWE1;P08670;Q53HU8 HEL113;VIM Vimentin yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 44.382 44.726 3 0.024055 15576 20181213_JW_Orientia_Karp_1_2 65.219 38.783 67393000 13805000 37553000 6896600 2060400 0 2510300 3992200 574990 2236 1571 1965 13723;13724;13725;13726;13727;13728;13729 8952 8952 1 ETNQDTNIVLPSLGESVSTGTISK Unmodified 2489.2497 0.24969192 1417 Karp_02254 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 1 2 65.344 65.543 2;3 1.8E-05 28315 20181213_JW_Orientia_Karp_1_3 152.25 99.354 317000000 65990000 61978000 66214000 2958000 52392000 15396000 52073000 0 2237 1417 1966 13730;13731;13732;13733;13734;13735;13736;13737;13738;13739;13740;13741 8953;8954;8955;8956;8957 8956 4 ETNTVIIPSNINDSSSVVTQALSIFDAIK Unmodified 3075.5976 0.59757516 1104 Karp_00281 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 78.085 78.034 3 1.4613E-05 32168 20181213_JW_Orientia_Karp_2_3 94.003 65.221 88528000 21488000 14623000 15851000 6306400 7831300 6607600 15821000 0 2238 1104 1967 13742;13743;13744;13745;13746;13747;13748;13749 8958;8959;8960;8961;8962;8963;8964;8965 8964 8 ETPFLSNPGTNLVFEDEITALQPEVDK Unmodified 3002.4761 0.47606304 487 Q6NZX3;Q53Z63;B2RBH2;P21589-2;P21589;Q96B60 NT5E 5'-nucleotidase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 75.055 75.054 3 1.5883E-25 35048 20181213_JW_Orientia_Karp_1_2 188.48 160.32 181660000 55651000 37087000 59037000 0 11331000 7313100 11240000 0 2239 487 1968 13750;13751;13752;13753;13754;13755 8966;8967;8968;8969;8970;8971;8972;8973 8968 8 ETPIGLVPK Unmodified 952.55933 0.55933258 1818 Q6IB91;Q16822;H0YML5;B4DW73 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 48.176 48.359 2 0.037816 18066 20181213_JW_Orientia_Karp_1_1 73.248 9.0409 45632000 14582000 15805000 15244000 0 0 0 0 0 2240 1818 1969 13756;13757;13758 8974 8974 1 ETQTPVMAQPK Oxidation (M) 1244.6071 0.60708741 625 E7ET01;E7ETL8;E7EQU2;E7ESD3;E7EMU4;E7EV09;E7EQL5;Q59GU5;B4DPZ3;Q13409-6;Q13409-3;Q13409-7;Q13409-2;Q13409-5;Q13409 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 26.966 27.276 2 0.00040211 6706 20181213_JW_Orientia_Karp_1_2 142 38.432 14780000 2320400 3397300 6644400 0 743710 0 1674100 0 2241 625 1970 13759;13760;13761;13762;13763 8975;8976;8977 8976 384 3 ETSGNLEQLLLAVVK Unmodified 1612.9036 0.903587 1573 V9HWE0;P08758;D6RBL5;D6RBE9 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 75.093 75.121 2 1.8125E-05 34991 20181213_JW_Orientia_Karp_1_1 162.93 89.038 39999000 24852000 12479000 0 0 2090200 0 0 577410 2242 1573 1971 13764;13765;13766;13767;13768;13769 8978;8979;8980;8981;8982 8978 5 ETSLIVTIQGSGSSHVPSVSPPIR Unmodified 2447.302 0.30200227 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.772 59.065 3 8.0241E-05 22480 20181213_JW_Orientia_Karp_2_1 112.82 86.587 90729000 19333000 20246000 23368000 7216900 12552000 6335300 1677600 0 2243 195 1972 13770;13771;13772;13773;13774;13775;13776 8983;8984;8985;8986;8987;8988;8989 8986 7 ETSSDVALASHILTALR Unmodified 1782.9476 0.94757708 1490 Q53HN4;O00273;A0A024R4H5;O00273-2 DFFA DNA fragmentation factor subunit alpha yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 64.34 64.518 3 0.024402 25108 20181213_JW_Orientia_Karp_2_2 57.53 32.992 17770000 6021500 0 0 0 6812600 4357300 0 578140 2244 1490 1973 13777;13778;13779;13780 8990 8990 1 ETTDTDTADQVIASFK Unmodified 1740.8054 0.8053891 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 59.081 59.374 2 3.0998E-49 25227 20181213_JW_Orientia_Karp_1_1 302.63 230.39 258920000 86149000 58907000 75415000 12446000 8861200 16957000 183750 0 2245 1509 1974 13781;13782;13783;13784;13785;13786;13787;13788 8991;8992;8993;8994;8995;8996;8997;8998 8991 8 ETTLDGYHK Unmodified 1062.4982 0.49818889 1081;1083 Karp_00113;Karp_00131 no no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 24.483 24.809 2 0.0013838 5719 20181213_JW_Orientia_Karp_1_2 126.28 54.4 15962000 1514500 8365000 2071000 0 0 1192700 2127900 690810 2246 1081;1083 1975 13789;13790;13791;13792;13793;13794 8999;9000 8999 2 ETTLDGYNK Unmodified 1039.4822 0.48220447 1151;1356;1068 Karp_00028;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 30.709 31.082 2 0.0013008 8395 20181213_JW_Orientia_Karp_1_3 127.46 50.615 270920000 90993000 69975000 55458000 0 14647000 11324000 18572000 9950300 2247 1068;1151;1356 1976 13795;13796;13797;13798;13799;13800;13801;13802 9001;9002;9003;9004;9005;9006;9007;9008 9003 8 ETTSLATIEQNFNK Unmodified 1594.7839 0.7838658 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 54.376 54.749 2 6.8443E-74 20292 20181213_JW_Orientia_Karp_2_3 301.11 217.23 393110000 110330000 115290000 92650000 37226000 0 29036000 174310 8399500 2248 1428 1977 13803;13804;13805;13806;13807;13808;13809 9009;9010;9011;9012;9013;9014 9013 6 ETVQTTEDQILK Unmodified 1403.7144 0.71438925 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B4DKC9;B4DTM7 VCL;HEL114 Vinculin yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 43.396 43.738 2 0.0020984 13701 20181213_JW_Orientia_Karp_3_2 123.51 56.946 58509000 18798000 15376000 19140000 0 0 0 3967800 1227900 2249 19 1978 13810;13811;13812;13813;13814 9015 9015 1 ETVSEESNVLCLSK Unmodified 1593.7556 0.75560214 1593 P13639;Q8TA90;B4DPU3;Q6W6M8 EEF2 Elongation factor 2 yes no 0 0 0 0 By MS/MS 1 49.553 49.804 2 0.0031118 17625 20181213_JW_Orientia_Karp_2_3 145.83 70.992 12796000 0 0 0 0 0 12796000 0 0 2250 1593 1979 13815 9016 9016 1 ETWLSENQR Unmodified 1161.5415 0.54145068 506;1499 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2;F8W6C1;B2RMN7;A0A024R674;Q59FP5;P11277-3;P11277;P11277-2;O15020-2;O15020;A4QPE4 SPTBN1;SPTB;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2 no no 0 0 0 0 By MS/MS 1 39.542 39.542 2 0.032171 13143 20181213_JW_Orientia_Karp_1_1 76.679 5.2995 8857200 8857200 0 0 0 0 0 0 0 2251 506;1499 1980 13816 9017 9017 1 ETWLSFIPGAK Unmodified 1247.655 0.65502388 1315 Karp_01271 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 71.596 71.674 2 0.00017251 32847 20181213_JW_Orientia_Karp_1_1 156.94 85.715 238030000 83372000 26846000 30389000 4136700 18261000 14739000 60281000 0 2252 1315 1981 13817;13818;13819;13820;13821;13822;13823 9018;9019;9020;9021;9022;9023;9024 9018 7 ETYGDMADCCEK Oxidation (M) 1493.5109 0.51088012 792 CON__P02769 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 25.907 26.347 2 0.00097832 5225 20181213_JW_Orientia_Karp_3_2 131.82 118.47 15826000 0 0 0 6989400 1662100 1844000 0 5330400 + 2253 792 1982 13824;13825;13826;13827;13828;13829 9025;9026;9027;9028;9029;9030 9030 456 6 ETYGEMADCCAK Oxidation (M) 1449.5211 0.52105087 620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;Q8IUK7;H7C013 ALB Serum albumin yes no 0 0 1 0 By MS/MS 1 26.184 26.184 2 0.002879 6765 20181213_JW_Orientia_Karp_1_1 114.4 93.564 7350800 7350800 0 0 0 0 0 0 0 + 2254 620 1983 13830 9031 9031 380 1 ETYNPVDFEIK Unmodified 1353.6452 0.64524705 1059 Karp_00003 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 57.66 57.99 2 4.3216E-18 23752 20181213_JW_Orientia_Karp_1_3 227.27 134.09 269080000 62597000 68256000 61188000 0 43587000 21568000 63716 11817000 2255 1059 1984 13831;13832;13833;13834;13835;13836;13837;13838 9032;9033;9034;9035;9036;9037;9038;9039 9034 8 EVAEAATGEDASSPPPK Unmodified 1654.7686 0.76860967 60 A0A024R1Z6;Q99536;Q99536-3;K7ERT7 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 2 1 32.573 32.639 2 5.7129E-24 9108 20181213_JW_Orientia_Karp_1_3 224.43 168.71 7870700 5002900 0 2867800 0 0 0 0 0 2256 60 1985 13839;13840;13841 9040;9041;9042 9042 3 EVASAASDGLLR Unmodified 1187.6146 0.61461563 1918 Q8TD55;B3KTW8;Q8TD55-2 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes no 0 0 0 0 By MS/MS 1 44.625 44.625 2 0.011019 15873 20181213_JW_Orientia_Karp_1_1 112.13 41.313 0 0 0 0 0 0 0 0 0 2257 1918 1986 13842 9043 9043 1 EVASNSELVQSSR Unmodified 1404.6845 0.68448611 795 CON__P08779;P08779;K7ENW6;Q16195 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 33.452 33.758 2 0.00014401 8677 20181213_JW_Orientia_Karp_3_2 183.99 62.484 0 0 0 0 0 0 0 0 0 + 2258 795 1987 13843;13844 9044;9045 9045 2 EVATNSELVQSGK Unmodified 1360.6834 0.68342347 790;924;807 CON__P02533;P02533;A0A024R1X6;CON__Q04695;CON__Q9QWL7;Q04695;Q14666;K7ESE1;F5GWP8 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 33.923 34.299 2 2.2404E-11 9577 20181213_JW_Orientia_Karp_2_3 202 127.47 52252000 0 9401200 6809300 8256200 8229600 7796400 11759000 0 + 2259 790;807;924 1988 13845;13846;13847;13848;13849;13850 9046;9047;9048 9048 3 EVDATSPAPSTSSTVK Unmodified 1575.7628 0.76279601 838 D3DUZ3;Q16666-2;Q16666;Q16666-3;Q16666-6;H3BM18;X6RHM1 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 By MS/MS 1 34.288 34.638 2 0.031853 10137 20181213_JW_Orientia_Karp_1_2 113.77 72.287 0 0 0 0 0 0 0 0 0 2260 838 1989 13851 9049 9049 1 EVDDLEQWIAER Unmodified 1501.7049 0.7048872 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 1 66.859 66.974 2 0.0012297 29357 20181213_JW_Orientia_Karp_1_3 174.57 102.37 0 0 0 0 0 0 0 0 0 2261 506 1990 13852 9050 9050 1 EVDEQMLAIQSK Unmodified 1389.681 0.68098063 1964 Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB6 Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 49.149 49.332 2 2.3141E-11 18704 20181213_JW_Orientia_Karp_1_1 224.66 140.71 57263000 16930000 16325000 24008000 0 0 0 0 0 2262 1964 1991 13853;13854;13855 9051;9052;9053 9051 3 EVDEQMLNVQNK Oxidation (M) 1461.677 0.67695789 1566;1747;602 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q6P602;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;A4UCT2;B4DMJ5 TUBB;XTP3TPATP1;TUBB2C;TUBB4B Tubulin beta chain;Tubulin beta-4B chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 1 1 35.276 35.649 2 2.1929E-51 11021 20181213_JW_Orientia_Karp_1_1 275.01 177.54 116210000 32938000 29366000 20399000 5789300 4171000 0 20175000 3372600 2263 1566;1747;602 1992 13856;13857;13858;13859;13860;13861;13862;13863;13864 9054;9055;9056;9057;9058;9059;9060;9061 9054 374;1183 8 EVDEQMLNVQNK Unmodified 1445.682 0.68204326 1566;1747;602 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q6P602;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;A4UCT2;B4DMJ5 TUBB;XTP3TPATP1;TUBB2C;TUBB4B Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 43.531 43.849 2 2.757E-23 14980 20181213_JW_Orientia_Karp_1_2 237.51 139.87 114190000 0 47257000 57032000 4222600 2854200 2538100 0 291120 2264 1566;1747;602 1992 13865;13866;13867;13868;13869;13870 9062;9063 9062 2 EVDGLLTSEPMGSPVSSK Oxidation (M) 1847.8823 0.88225921 1923 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;A0A024QZC0;A0A024QZB7;A0A024QZ91;H3BUF6 ATXN2L Ataxin-2-like protein yes no 0 0 1 0 By matching By MS/MS 1 1 52.078 52.503 2 0.020548 18290 20181213_JW_Orientia_Karp_3_1 77.078 38.444 20130000 0 0 15025000 0 0 0 5104400 0 2265 1923 1993 13871;13872 9064 9064 1500 1 EVDIGIPDATGR Unmodified 1241.6252 0.62518031 1708 V9HW80;P55072;Q96IF9;Q0IIN5 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 53.967 54.234 2 0.00034754 21905 20181213_JW_Orientia_Karp_1_1 155 88.31 216170000 88335000 53741000 38954000 10740000 11944000 12461000 0 0 2266 1708 1994 13873;13874;13875;13876;13877;13878 9065;9066;9067;9068 9065 4 EVEELEQLTQQLMQDMEHPQR Oxidation (M) 2626.2003 0.20031566 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;B4DQR8;C9JJK5 ZYX Zyxin yes no 0 0 1 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 1 2 2 2 2 70.695 70.817 3 0.0039885 28866 20181213_JW_Orientia_Karp_2_3 94.203 71.828 71004000 11553000 0 10149000 3060800 14464000 7078900 19050000 5648700 2267 1812 1995 13879;13880;13881;13882;13883;13884;13885;13886;13887;13888;13889;13890;13891 9069;9070;9071 9070 1450 3 EVEHAVIEAQESYNSLIDILSR Unmodified 2514.2602 0.26019703 1205 Karp_00841 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 72.571 72.64 3 0.0056604 33381 20181213_JW_Orientia_Karp_1_1 73.383 25.657 87970000 29594000 19872000 19610000 7484700 0 11410000 0 0 2268 1205 1996 13892;13893;13894;13895;13896 9072 9072 1 EVEHLKRCQQQMAED 3 Deamidation (NQ) 1902.8088 0.8087767 770 C9JCG6 IKBKG yes yes 0 3 0 2 By MS/MS 1 52.508 52.759 2 0.031269 19206 20181213_JW_Orientia_Karp_2_3 64.439 19.182 0 0 0 0 0 0 0 0 0 2269 770 1997 13897 9073 9073 1634;1635;1636 1 EVEIAYSDVAK Unmodified 1222.6081 0.60813326 1863 Q6FIC5;Q9Y696;B4DWC4;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 46.22 46.564 2 7.8363E-10 16532 20181213_JW_Orientia_Karp_1_2 208.11 138.28 220790000 92677000 48207000 47395000 9898200 0 7240600 2049100 13319000 2270 1863 1998 13898;13899;13900;13901;13902;13903;13904 9074;9075;9076;9077;9078;9079 9075 6 EVELNPSVFCLK Unmodified 1433.7225 0.72245152 1241 Karp_00908 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 64.816 65.083 2 5.5972E-23 28472 20181213_JW_Orientia_Karp_1_2 233.84 152.31 70155000 39598000 20883000 0 0 0 0 0 9673600 2271 1241 1999 13905;13906;13907;13908;13909;13910;13911 9080;9081;9082;9083;9084;9085;9086 9081 7 EVEQFTQVAK Unmodified 1177.5979 0.59790293 384 H3BPJ9;A8K761;O96000-2;O96000 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 39.889 40.255 2 0.0015668 12525 20181213_JW_Orientia_Karp_3_1 117.53 18.944 27708000 18996000 0 0 2879400 0 0 5832500 0 2272 384 2000 13912;13913;13914;13915 9087;9088 9088 2 EVEQLRMERLQIDEQLR 2 Deamidation (NQ) 2186.1001 0.10013134 570 E7EU85;B4DGH9;E9PFF5;B4DM21;B4DM78;B4DXZ6;P51114-3;P51114-2;P51114 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 2 0 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 33.107 33.397 4 0.038933 8920 20181213_JW_Orientia_Karp_2_3 47.537 20.022 5009400000 1261800000 960830000 2110500000 0 0 181870000 494380000 0 2273 570 2001 13916;13917;13918;13919;13920 9089 9089 1523;1524 1 EVFEDAAEIR Unmodified 1177.5615 0.56151742 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338;H7BY16 NCL Nucleolin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 47.979 48.281 2 2.5089E-07 16463 20181213_JW_Orientia_Karp_2_2 193.38 52.183 134500000 14563000 26791000 13159000 32251000 20089000 18146000 0 9496900 2274 88 2002 13921;13922;13923;13924;13925;13926;13927 9090;9091;9092;9093;9094 9093 5 EVFEMATR Oxidation (M) 997.45388 0.45388123 33 Q5JR08;A0A024R0I3;P08134;B4DKN9;A0A024R324;P61586;Q9BVT0 RHOC;hCG_2043376;RHOA;ARHA Rho-related GTP-binding protein RhoC;Transforming protein RhoA yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 1 33.473 33.806 2 0.0036963 9445 20181213_JW_Orientia_Karp_3_1 131.03 55.842 55816000 18834000 13956000 932310 7666800 8019900 0 6406500 0 2275 33 2003 13928;13929;13930;13931;13932;13933;13934;13935 9095;9096;9097;9098 9098 17 4 EVFFGEDFITVTK Unmodified 1530.7606 0.76061116 1200 Karp_00819 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.243 72.338 2 2.0265E-58 29513 20181213_JW_Orientia_Karp_2_3 277.1 204.78 606500000 185050000 102290000 113800000 11869000 56095000 35947000 76514000 24928000 2276 1200 2004 13936;13937;13938;13939;13940;13941;13942;13943 9099;9100;9101;9102;9103;9104;9105;9106 9104 8 EVGDGTTSVVIIAAELLK Unmodified 1814.0037 0.0036949795 875 F5H726;F5H676;F5H136;E7ERF2;P17987 TCP1 T-complex protein 1 subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 76.642 76.651 2 0.00010193 36079 20181213_JW_Orientia_Karp_1_1 140.33 73.112 48772000 14595000 9239600 12632000 1907600 0 0 8880700 1517100 2277 875 2005 13944;13945;13946;13947;13948;13949 9107;9108;9109;9110;9111 9107 5 EVHEQLLSTEQVSDQK Unmodified 1868.9116 0.91158551 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 38.863 39.138 3 2.5079E-14 11970 20181213_JW_Orientia_Karp_3_1 207.08 147.83 203320000 66792000 0 74036000 0 0 9840900 52648000 0 2278 1789 2006 13950;13951;13952;13953 9112;9113;9114;9115;9116 9115 5 EVIAFPMNQQAEDLLMGAPAAVTDK Oxidation (M) 2674.2982 0.2982388 1168 Karp_00622 yes yes 0 0 1 0 By MS/MS By matching By matching 1 1 1 73.271 73.323 3 0.0057298 33844 20181213_JW_Orientia_Karp_1_1 68.705 31.96 21453000 13772000 5241500 0 0 0 0 0 2440000 2279 1168 2007 13954;13955;13956 9117 9117 704 1 EVIFIAIADYK Unmodified 1280.7016 0.70163972 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 2 3 3 1 70.197 70.319 1;2 7.4151E-13 31600 20181213_JW_Orientia_Karp_1_1 215.93 161.15 755080000 143620000 82790000 163820000 260850 122560000 85670000 154530000 1827900 2280 1068;1081;1083;1086;1151;1356 2008 13957;13958;13959;13960;13961;13962;13963;13964;13965;13966;13967;13968;13969;13970;13971;13972;13973;13974;13975;13976 9118;9119;9120;9121;9122;9123;9124;9125;9126;9127;9128;9129;9130;9131 9118 13 EVIIPDTITVNELALR Unmodified 1795.0091 0.0091147084 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.609 72.678 2 1.1316E-06 33389 20181213_JW_Orientia_Karp_1_1 178.84 117.02 517050000 133230000 63968000 102490000 23281000 24364000 25988000 89883000 53846000 2281 1366 2009 13977;13978;13979;13980;13981;13982;13983;13984 9132;9133;9134;9135;9136;9137;9138;9139 9132 8 EVILPITNK Unmodified 1025.6121 0.61209643 1421 Karp_02305 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 51.308 51.557 2 0.010835 19695 20181213_JW_Orientia_Karp_1_3 92.439 28.96 55856000 13211000 17674000 11327000 6444600 3132000 4066600 0 0 2282 1421 2010 13985;13986;13987;13988;13989;13990 9140;9141;9142;9143 9142 4 EVIPELANCLDGSSVR Unmodified 1757.8618 0.86179854 1432 Karp_02389 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 61.688 61.967 2 0.021427 26315 20181213_JW_Orientia_Karp_1_3 85.271 53.282 61647000 16442000 18069000 10644000 2458700 6884400 5075700 2074300 0 2283 1432 2011 13991;13992;13993;13994;13995;13996;13997 9144;9145;9146 9145 3 EVISETPIASILSNQK Unmodified 1727.9305 0.93053004 1105 Karp_00283 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 66.094 66.275 2 1.2785E-27 29557 20181213_JW_Orientia_Karp_1_1 227.48 163.79 139130000 47595000 56471000 0 0 9127900 4907200 21029000 0 2284 1105 2012 13998;13999;14000;14001;14002 9147;9148 9147 1 EVLAELEALER Unmodified 1270.6769 0.67688153 1818 Q6IB91;Q16822;H0YML5;B4DW73 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 63.689 63.894 2 5.7949E-14 28074 20181213_JW_Orientia_Karp_1_1 227.88 151.78 11002000 9502900 0 0 0 0 0 0 1499400 2285 1818 2013 14003;14004;14005;14006;14007 9149;9150;9151;9152;9153 9149 4 EVLINNINR Unmodified 1083.6037 0.60365701 956 H0YJS4;G3V4T5;Q53XC0;P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 42.772 42.954 2 0.0069128 14379 20181213_JW_Orientia_Karp_1_3 100.19 53.762 29309000 10122000 7701800 11485000 0 0 0 0 0 2286 956 2014 14008;14009;14010;14011;14012 9154;9155;9156 9154 3 EVLMIGEYSNPSFIGTPIVK Unmodified 2193.1391 0.1391426 1156 Karp_00571 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 72.977 73.047 2 1.8356E-37 33663 20181213_JW_Orientia_Karp_1_1 231.13 184.42 184810000 58910000 39766000 46476000 0 12929000 0 26730000 0 2287 1156 2015 14013;14014;14015;14016;14017;14018 9157;9158;9159;9160;9161;9162 9157 6 EVLMIGEYSNPSFIGTPIVK Oxidation (M) 2209.1341 0.13405723 1156 Karp_00571 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 71.721 71.83 2 1.5003E-48 32774 20181213_JW_Orientia_Karp_1_2 252.46 186.13 125570000 29245000 25582000 38193000 8250600 0 0 24301000 0 2288 1156 2015 14019;14020;14021;14022;14023 9163;9164;9165;9166 9163 686 4 EVLPALENNK Unmodified 1125.603 0.60298831 440 B1AQP2;Q9UHV9 PFDN2 Prefoldin subunit 2 yes no 0 0 0 0 By MS/MS 1 45.224 45.375 2 0.029393 14828 20181213_JW_Orientia_Karp_2_2 80.755 26.598 0 0 0 0 0 0 0 0 0 2289 440 2016 14024 9167 9167 1 EVLPALENNK Deamidation (NQ) 1126.587 0.58700389 440 B1AQP2;Q9UHV9 PFDN2 Prefoldin subunit 2 yes no 0 1 0 0 By matching By MS/MS 1 1 48.852 49.053 2 0.018045 17231 20181213_JW_Orientia_Karp_2_3 93.598 44.803 7555800 0 0 0 0 2022400 5533400 0 0 2290 440 2016 14025;14026 9168 9168 170 1 EVLQALEELAVNYDQK Unmodified 1860.9469 0.94690838 834 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1VPF7;M1VRN0;M1VKI9;M1VE89;M1V481;Q57Z91;A1L179;J3KNA1;B7Z2M7;B2RCP3;O60282-2;O60282;Q12840;Q3LIE3 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12;KIF5B-ALK_K17;A20;KIF5C;KIF5A;Nbla04137 Kinesin-like protein;Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 73.312 73.328 3 0.0041124 33568 20181213_JW_Orientia_Karp_1_3 107.13 60.828 24590000 17862000 0 2462200 0 0 0 4265800 0 2291 834 2017 14027;14028;14029 9169 9169 1 EVQEFYK Unmodified 941.44945 0.44944778 325 B4DPP0;A6NNI4;G8JLH6;P21926;F5GXT1;Q56CY1;B4DK09 CD9;BTCC-1 Tetraspanin;CD9 antigen yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 35.825 36.125 2 0.017184 10791 20181213_JW_Orientia_Karp_1_3 107.43 6.2178 29783000 10399000 10451000 6655600 0 0 0 2276700 0 2292 325 2018 14030;14031;14032;14033 9170;9171;9172 9172 3 EVQEMMVQLENK 2 Oxidation (M) 1508.6851 0.68507973 1175 Karp_00629 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.303 35.676 2 3.955E-40 9485 20181213_JW_Orientia_Karp_2_2 257.09 125.57 92385000 11570000 19612000 17616000 7423400 10621000 0 13686000 11857000 2293 1175 2019 14034;14035;14036;14037;14038;14039;14040;14041 9173;9174;9175;9176;9177;9178;9179;9180 9177 733;734 8 EVQEMMVQLENK Oxidation (M) 1492.6902 0.69016511 1175 Karp_00629 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 1 1 43.617 43.902 2 1.2965E-40 15415 20181213_JW_Orientia_Karp_1_1 267.85 170.22 123210000 39795000 15846000 35811000 16795000 3792200 2740800 7011100 1418200 2294 1175 2019 14042;14043;14044;14045;14046;14047;14048;14049;14050 9181;9182;9183;9184;9185;9186;9187;9188 9181 733;734 8 EVQEMMVQLENK Unmodified 1476.6953 0.69525049 1175 Karp_00629 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 52.157 52.502 2 2.7524E-40 20316 20181213_JW_Orientia_Karp_1_3 265 133.39 148350000 52666000 31474000 29891000 9085200 12455000 8035900 2993000 1752000 2295 1175 2019 14051;14052;14053;14054;14055;14056;14057;14058 9189;9190;9191;9192;9193;9194 9191 6 EVQLEELEAAR Unmodified 1285.6514 0.65139506 1698 V9HWE7;Q6ZP37;P51570;P51570-2;K7EII7 HEL-S-19;GALK1 Galactokinase yes no 0 0 0 0 By matching By MS/MS 1 1 50.361 50.46 2 0.00054933 18895 20181213_JW_Orientia_Karp_1_3 139.15 16.214 6734600 3115800 0 3618700 0 0 0 0 0 2296 1698 2020 14059;14060 9195 9195 1 EVQYLLNK Unmodified 1005.5495 0.54949617 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;B7Z602;Q68D25 HYOU1;DKFZp686N08236 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 42.918 43.199 2 0.0051319 15121 20181213_JW_Orientia_Karp_1_1 120.65 42.029 35968000 16545000 13512000 0 0 1027700 1598900 3284200 0 2297 545 2021 14061;14062;14063;14064;14065 9196 9196 1 EVSEAVVDTLESEYLK Unmodified 1809.8884 0.88839045 195 A0A024RAB6;P98160;Q5SZJ2 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.585 69.73 2 1.3441E-05 27606 20181213_JW_Orientia_Karp_3_2 161.25 101.35 112210000 23676000 12454000 37397000 2863400 6714000 2628600 15808000 10671000 2298 195 2022 14066;14067;14068;14069;14070;14071;14072;14073 9197;9198;9199;9200;9201 9201 3 EVSFQSTGESEWK Unmodified 1512.6733 0.67325272 374 A8K651;Q07021;I3L3Q7;I3L3B0 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 46.41 46.73 2 4.6989E-17 15698 20181213_JW_Orientia_Karp_2_1 213.63 126.75 122760000 23411000 29235000 32577000 9936200 8343400 10330000 2189200 6738700 2299 374 2023 14074;14075;14076;14077;14078;14079;14080;14081 9202;9203;9204 9203 3 EVSVETVSILSK Unmodified 1289.7078 0.70784731 1764 Q02952-3;Q02952-2;Q02952 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By matching 1 1 55.37 55.95 2 0.00074106 20842 20181213_JW_Orientia_Karp_2_1 141.91 94.042 12245000 0 0 0 11736000 0 0 0 508970 2300 1764 2024 14082;14083 9205 9205 1 EVTDEIVK Unmodified 931.48623 0.48622722 138 A0A024R6K8;P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 37.591 37.774 2 0.02258 12201 20181213_JW_Orientia_Karp_1_1 86.794 16.795 57094000 17063000 13530000 26501000 0 0 0 0 0 2301 138 2025 14084;14085;14086 9206;9207 9206 2 EVTINQSLLAPLR Unmodified 1452.83 0.83002813 811 CON__Q3KNV1;P08729;CON__P08729 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.692 63.924 2 1.2525E-34 27431 20181213_JW_Orientia_Karp_1_3 266.26 179.12 168190000 32319000 38512000 57938000 2956800 16988000 11252000 361570 7867700 + 2302 811 2026 14087;14088;14089;14090;14091;14092;14093;14094 9208;9209;9210;9211;9212;9213;9214 9210 7 EVTQLRHGVQELEIELQSQLSK Unmodified 2563.3606 0.36057978 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By matching By matching By MS/MS 1 1 1 61.511 61.762 4 0.039179 24056 20181213_JW_Orientia_Karp_2_3 39.992 12.045 16374000 0 2431200 0 0 11789000 2154300 0 0 + 2303 1653 2027 14095;14096;14097 9215 9215 0 EVTSDSGSIVVSGLTPGVEYVYTIQVLR Unmodified 2967.5441 0.54408303 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 75.231 75.231 3 9.2932E-05 30725 20181213_JW_Orientia_Karp_2_1 94.955 59.519 40643000 23974000 0 0 3169400 5173000 4436800 3889700 0 2304 85 2028 14098;14099;14100;14101;14102 9216;9217;9218;9219 9217 4 EVTSDSGSIVVSGLTPGVEYVYTIQVLR Deamidation (NQ) 2968.5281 0.52809862 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 0 0 By MS/MS 1 75.169 75.218 3 0.0059822 35142 20181213_JW_Orientia_Karp_1_2 73.127 45.923 10021000 0 10021000 0 0 0 0 0 0 2305 85 2028 14103 9220 9220 1284 0 EVTVPVFYPTEK Unmodified 1407.7286 0.72858275 79 B2R642;A0A024R3I5;P43121;A8K6A6;B3KXZ9;P43121-2 MCAM Cell surface glycoprotein MUC18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.677 60.998 2 0.00060558 23364 20181213_JW_Orientia_Karp_2_2 133.81 93.456 523740000 165270000 117740000 70969000 29420000 55092000 42274000 2803400 40163000 2306 79 2029 14104;14105;14106;14107;14108;14109;14110;14111 9221;9222;9223;9224;9225;9226;9227 9225 7 EVTWEVLEGEVEK Unmodified 1545.7563 0.75625407 700 Q9UMH5;B5BUB5;P05455 SSB Lupus La protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.65 63.883 2 1.5242E-05 27432 20181213_JW_Orientia_Karp_1_3 214.67 121.11 85736000 14752000 40032000 12335000 2437700 8476300 4584400 123790 2995100 2307 700 2030 14112;14113;14114;14115;14116;14117;14118;14119 9228;9229;9230;9231;9232;9233;9234 9232 7 EVVDPTK Unmodified 786.41233 0.41233399 797 CON__P12763 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 26.07 26.548 2 0.015127 6145 20181213_JW_Orientia_Karp_3_1 111.65 15.601 21627000 0 0 974430 0 10281000 0 5840000 4531700 + 2308 797 2031 14120;14121;14122;14123 9235 9235 1 EVVEEAENGR Unmodified 1130.5204 0.52038089 746 Q15203;Q7KZ52;B8ZZQ6;V9HVW6;Q15202;Q8TBK9;Q86YS2;Q53S24;Q15204;P06454-2;P06454;Q9UMZ1;Q9NYD3;Q15254;Q15200;V9HVW7;B8ZZA1;B8ZZW7;H7C2N1 PTMA;PTMAP7 Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 0 0 0 0 By MS/MS 1 27.052 27.052 2 1.6734E-08 7028 20181213_JW_Orientia_Karp_1_1 199.46 125.79 14540000 14540000 0 0 0 0 0 0 0 2309 746 2032 14124 9236 9236 1 EVVKPVPITSPAVSK Unmodified 1549.9079 0.9079441 257 A0A024RDE8;Q96HC4;Q4W5K9 PDLIM5;LIM PDZ and LIM domain protein 5 yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 42.863 43.193 3 0.02816 13430 20181213_JW_Orientia_Karp_3_2 79.614 50.711 103290000 26517000 30213000 10709000 3726600 3128300 0 28420000 575300 2310 257 2033 14125;14126;14127;14128;14129;14130;14131 9237;9238;9239 9239 3 EVVLQWFTENSK Deamidation (NQ) 1479.7246 0.72456001 234;613 A0A024RC61;Q59E93;P15144;B4DV63;B4DP96;B4DPH5;B4DP01 ANPEP Aminopeptidase N no no 0 1 0 0 By MS/MS By MS/MS By matching 1 1 1 69.641 69.765 2 3.4411E-07 31491 20181213_JW_Orientia_Karp_1_2 187.31 142.15 9892100 0 3116900 6775200 0 0 0 0 0 2311 234;613 2034 14132;14133;14134 9240;9241 9241 90 2 EVVLQWFTENSK Unmodified 1478.7405 0.74054442 234;613 A0A024RC61;Q59E93;P15144;B4DV63;B4DP96;B4DPH5;B4DP01 ANPEP Aminopeptidase N no no 0 0 0 0 By MS/MS 1 66.044 66.453 2 0.020249 25666 20181213_JW_Orientia_Karp_3_2 97.452 67.785 0 0 0 0 0 0 0 0 0 2312 234;613 2034 14135 9242 9242 1 EVYQQQQYGSGGR Unmodified 1498.6801 0.68006943 604 D6R9P3;D6RD18;B4DMY3;D6RBZ0;Q53F64;Q99729-3;Q99729-2;Q99729-4;Q99729 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.97 29.327 2 6.067E-18 6527 20181213_JW_Orientia_Karp_2_2 224.25 148.59 35235000 9166100 5422900 3532700 4424700 3046600 1850800 4209600 3582000 2313 604 2035 14136;14137;14138;14139;14140;14141;14142;14143 9243;9244;9245;9246;9247;9248;9249;9250;9251;9252 9248 10 EWEKMKSSEK Oxidation (M) 1296.602 0.60200203 1512 O60224-2;Q7RTT3;O60224 SSX4;SSX9 Protein SSX4;Protein SSX9 yes no 0 0 1 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 18.214 18.574 2 0.02375 3756 20181213_JW_Orientia_Karp_1_2 113.26 9.2421 123890000 33459000 33256000 23542000 0 5607700 16568000 0 11456000 2314 1512 2036 14144;14145;14146;14147;14148;14149 9253;9254;9255;9256;9257 9254 1121 5 EWIIEEIK Unmodified 1058.5648 0.56481189 1409 Karp_02226 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.939 61.242 2 0.0042162 23813 20181213_JW_Orientia_Karp_2_3 136.11 27.101 28640000 0 0 14668000 0 6186000 5183500 0 2603000 2315 1409 2037 14150;14151;14152;14153;14154;14155;14156 9258;9259;9260;9261;9262;9263 9262 6 EWITGEPDQSISNSMNK Unmodified 1934.868 0.86800613 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 53.701 54.053 2 4.6066E-23 21781 20181213_JW_Orientia_Karp_1_1 234.83 175.46 87471000 42528000 36893000 0 3496700 0 2665600 0 1887900 2316 1166 2038 14157;14158;14159;14160;14161 9264;9265 9264 2 EWITGEPDQSISNSMNK Oxidation (M) 1950.8629 0.86292076 1166 Karp_00620 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 49.039 49.384 2 3.3368E-54 18200 20181213_JW_Orientia_Karp_1_2 266.77 224.53 139760000 2103300 58830000 39282000 11354000 7034900 8869800 103830 12178000 2317 1166 2038 14162;14163;14164;14165;14166;14167;14168;14169 9266;9267;9268;9269;9270;9271 9266 698 6 EWITGEPDQSISNSMNK Oxidation (M);Deamidation (NQ) 1951.8469 0.84693634 1166 Karp_00620 yes yes 0 1 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 51.641 51.913 2 4.2678E-06 18247 20181213_JW_Orientia_Karp_3_1 152.16 112.25 102490000 29840000 30040000 23191000 3829500 3207400 0 12384000 0 2318 1166 2038 14170;14171;14172;14173;14174;14175;14176;14177;14178 9272;9273;9274;9275 9275 556 698 3 EWITGEPDQSISNSMNK Deamidation (NQ) 1935.852 0.85202172 1166 Karp_00620 yes yes 0 1 0 0 By MS/MS By matching 1 1 55.08 55.354 2 4.3368E-17 22280 20181213_JW_Orientia_Karp_1_2 209.19 156.11 28513000 0 17140000 11373000 0 0 0 0 0 2319 1166 2038 14179;14180 9276 9276 556 1 EWNDSTSVQNPTR Unmodified 1532.6855 0.68554874 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3-2 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By MS/MS By matching 1 1 37.645 37.971 2 0.0058605 12276 20181213_JW_Orientia_Karp_1_1 107.85 64.55 15276000 12574000 0 0 0 0 0 2702400 0 2320 2015 2039 14181;14182 9277 9277 1 EWSGLLEELAR Unmodified 1301.6616 0.66156582 1760 Q01813;Q01813-2;V9GYV7;Q5VSR5 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.436 70.557 2 0.00041889 32172 20181213_JW_Orientia_Karp_1_1 144.77 82.307 26611000 13517000 0 0 1057700 3494500 1429200 7112900 0 2321 1760 2040 14183;14184;14185;14186;14187;14188;14189 9278;9279;9280;9281;9282;9283;9284 9279 7 EWVESMGGK Oxidation (M) 1037.4488 0.44879585 676 B4E0U6;P50502;Q3KNR6;Q0IJ56;Q8NFI4;Q1XBU7 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 30.472 30.822 2 0.011807 7654 20181213_JW_Orientia_Karp_2_1 87.696 43.004 15514000 3673300 1917000 3600500 3354100 2010300 0 958630 0 2322 676 2041 14190;14191;14192;14193;14194;14195 9285;9286 9286 414 2 EYAEDDNIYQQK Unmodified 1514.6525 0.65251728 616 F5GYN4;Q659F9;J3KR44;B4DPD5;Q96FW1;F5H6Q1;F5GYJ8 OTUB1;DKFZp564E242 Ubiquitin thioesterase OTUB1 yes no 0 0 0 0 By MS/MS By matching 1 1 37.67 37.845 2 0.0020189 12214 20181213_JW_Orientia_Karp_1_1 121.5 65.244 5787100 3344700 2442400 0 0 0 0 0 0 2323 616 2042 14196;14197 9287 9287 1 EYAIFNFAK Unmodified 1101.5495 0.54949617 1144 Karp_00459 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 2 1 2 61.462 61.73 1;2 1.0653E-06 26092 20181213_JW_Orientia_Karp_1_3 208.86 142.43 490640000 131040000 96673000 89133000 0 73060000 71730000 133450 28867000 2324 1144 2043 14198;14199;14200;14201;14202;14203;14204;14205;14206;14207;14208;14209;14210 9288;9289;9290;9291;9292;9293;9294;9295 9291 7 EYAIFNFAK Deamidation (NQ) 1102.5335 0.53351176 1144 Karp_00459 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 62.687 62.877 2 0.001469 24555 20181213_JW_Orientia_Karp_2_3 139.68 84.003 25980000 9161600 2273000 4620200 0 4451600 5473400 0 0 2325 1144 2043 14211;14212;14213;14214;14215;14216 9296;9297;9298;9299 9298 535 4 EYDPTCQVTINK Unmodified 1466.6711 0.67114423 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 42.65 43.031 2 1.2599E-30 13919 20181213_JW_Orientia_Karp_3_1 247.22 150.56 262780000 88191000 75098000 48816000 17409000 0 0 26076000 7189800 2326 1320 2044 14217;14218;14219;14220;14221;14222;14223 9300;9301;9302;9303;9304;9305 9304 6 EYEATLEECCAK Unmodified 1501.6065 0.60649506 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 38.135 38.452 2 2.4339E-65 12500 20181213_JW_Orientia_Karp_1_1 300.71 226.33 187620000 21820000 19065000 31867000 21390000 24119000 0 69357000 0 + 2327 792 2045 14224;14225;14226;14227;14228;14229;14230 9306;9307;9308;9309;9310;9311 9306 6 EYENIIALQENELK Unmodified 1704.857 0.85703074 972 H0YEG8;Q2L696;J3KQU0;V9HW75;P80303-2;P80303 NUCB2;Nucb2;HEL-S-109 Nucleobindin-2;Nesfatin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 60.38 60.667 2 2.206E-17 25431 20181213_JW_Orientia_Karp_1_3 258.65 170.52 51881000 12938000 6285800 9487700 9125000 6084300 6176800 0 1783400 2328 972 2046 14231;14232;14233;14234;14235;14236;14237 9312;9313;9314;9315;9316;9317 9314 6 EYEYAELTK Unmodified 1144.5288 0.52882031 1369 Karp_01981 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.863 43.223 2 0.0016706 14450 20181213_JW_Orientia_Karp_1_3 122.19 59.723 121340000 36143000 45785000 23280000 5397000 0 0 9778300 951830 2329 1369 2047 14238;14239;14240;14241;14242;14243;14244 9318;9319;9320;9321;9322;9323;9324 9320 7 EYFGGFGEVESIELPMDNK Oxidation (M) 2175.9671 0.96705148 254 H0YA96;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103-4;Q14103-3;Q14103-2;Q14103;B4E0W4;D6RAF8 HNRNPD;HNRPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 70.657 70.761 2;3 8.732E-18 32226 20181213_JW_Orientia_Karp_1_1 206.45 166.89 131050000 21225000 24330000 14015000 975220 20259000 15814000 34429000 0 2330 254 2048 14245;14246;14247;14248;14249;14250;14251;14252;14253;14254;14255;14256;14257 9325;9326;9327;9328;9329;9330;9331 9325 184 7 EYFGGFGEVESIELPMDNK Unmodified 2159.9721 0.97213685 254 H0YA96;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103-4;Q14103-3;Q14103-2;Q14103;B4E0W4;D6RAF8 HNRNPD;HNRPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 73.116 73.191 2 1.5868E-09 33429 20181213_JW_Orientia_Karp_1_3 171.26 126.69 100130000 24842000 31215000 35265000 0 8807300 0 0 0 2331 254 2048 14258;14259;14260;14261;14262 9332;9333;9334;9335 9334 4 EYFNIGSSFLK Unmodified 1303.6449 0.64485312 1152;1264;1145 Karp_00478;Karp_01552;Karp_00538;Karp_01053 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 64.954 65.083 2 5.164E-08 28470 20181213_JW_Orientia_Karp_1_2 194.12 115.85 128620000 51760000 22697000 33145000 0 14600000 6418400 0 0 2332 1145;1152;1264 2049 14263;14264;14265;14266;14267 9336;9337;9338;9339;9340 9337 5 EYFNIGSSFLK Deamidation (NQ) 1304.6289 0.62886871 1152;1264;1145 Karp_00478;Karp_01552;Karp_00538;Karp_01053 no no 0 1 0 0 By MS/MS 1 64.789 65.199 2 0.0090962 24836 20181213_JW_Orientia_Karp_3_2 120.99 58.524 7374000 0 0 0 0 0 0 0 7374000 2333 1145;1152;1264 2049 14268 9341 9341 539 0 EYFNIGSSFLR Unmodified 1331.651 0.65100113 1259;1355 Karp_00993;Karp_01675 no no 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 65.601 65.826 2 2.8013E-07 22924 20181213_JW_Orientia_Karp_3_1 197.79 146.73 50829000 20821000 9195000 0 59318 6936900 4283700 9533200 0 2334 1259;1355 2050 14269;14270;14271;14272;14273;14274 9342;9343;9344 9344 3 EYHHIFNVK Unmodified 1185.5931 0.59309232 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 28.641 29.021 3 0.029246 7034 20181213_JW_Orientia_Karp_2_3 57.59 27.272 22151000 0 0 13439000 1146500 3684900 797850 3082300 0 2335 1374 2051 14275;14276;14277;14278;14279;14280 9345;9346;9347 9347 3 EYIHHYYQR Unmodified 1307.6047 0.60471964 1203 Karp_00824 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 23.397 23.792 3 0.0097611 5186 20181213_JW_Orientia_Karp_1_3 80.165 22.818 62855000 0 18441000 5497200 8839700 13037000 4701100 5853000 6486100 2336 1203 2052 14281;14282;14283;14284;14285;14286;14287 9348;9349;9350 9349 3 EYILGLAK Unmodified 905.52222 0.52221879 1418 Karp_02255 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 52.008 52.334 2 0.014971 19010 20181213_JW_Orientia_Karp_2_3 95.793 33.076 18324000 0 4895500 0 7149200 1446700 4832400 0 0 2337 1418 2053 14288;14289;14290;14291 9351;9352 9352 2 EYIPGQPPLSQSSDSSPTR Unmodified 2044.9702 0.97016302 1568 P07814;V9GYZ6;Q3KQZ8;B4DKX5 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 49.181 49.364 2 0.017907 18299 20181213_JW_Orientia_Karp_1_2 80.507 30.876 19245000 5184700 5845500 8215000 0 0 0 0 0 2338 1568 2054 14292;14293;14294 9353 9353 1 EYLVAQMNR Oxidation (M) 1138.5441 0.54409322 1358 Karp_01807 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 34.684 34.974 2 1.258E-06 9555 20181213_JW_Orientia_Karp_2_1 195.81 125.29 105760000 25096000 25203000 34317000 0 8433100 0 12714000 0 2339 1358 2055 14295;14296;14297;14298;14299;14300 9354;9355;9356;9357;9358 9358 932 5 EYNFIYGTNALQESLIK Unmodified 2002.0048 0.004757612 1446 Karp_02445 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.875 71.001 2 5.0361E-17 32347 20181213_JW_Orientia_Karp_1_2 207.64 149.47 60595000 18512000 12230000 14168000 4084700 5315400 0 0 6283900 2340 1446 2056 14301;14302;14303;14304;14305;14306 9359;9360;9361;9362;9363;9364 9360 6 EYNFQDGPNDQGEMFER Oxidation (M) 2090.8276 0.82759788 1142 Karp_00456 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.193 48.494 2 1.6726E-83 16682 20181213_JW_Orientia_Karp_2_1 293.8 240.56 27806000 5570800 7819900 6493800 2791700 2117500 1295600 0 1716600 2341 1142 2057 14307;14308;14309;14310;14311;14312;14313 9365;9366;9367;9368;9369;9370;9371 9368 676 7 EYNFQDGPNDQGEMFER Unmodified 2074.8327 0.83268326 1142 Karp_00456 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 53.982 54.081 2 0.0057551 21305 20181213_JW_Orientia_Karp_1_3 100.11 56.818 21965000 15484000 0 6480300 0 0 0 0 0 2342 1142 2057 14314;14315 9372;9373 9373 2 EYNLALGK Unmodified 906.48108 0.48108226 1108 Karp_00286 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 43.133 43.443 2 0.0056134 14036 20181213_JW_Orientia_Karp_2_1 143 38.556 1024100000 286260000 440480000 170200000 0 2491500 0 123470000 1191600 2343 1108 2058 14316;14317;14318;14319;14320;14321;14322;14323;14324 9374;9375;9376;9377;9378;9379 9376 6 EYNVDLK Unmodified 879.4338 0.43379771 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 37.534 37.872 2 0.012107 12206 20181213_JW_Orientia_Karp_1_1 128.86 17.213 44295000 0 23410000 17368000 2267600 0 1250000 0 0 2344 1395 2059 14325;14326;14327;14328;14329 9380;9381 9380 2 EYPDFNFVGR Unmodified 1242.5669 0.56693715 1950 Q96PU8-5;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8;F5H5U6;F5H8C8;F5GXS8;F5GYM3 QKI Protein quaking yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 60.063 60.313 2 0.00068004 25529 20181213_JW_Orientia_Karp_1_2 130.75 96.542 46474000 15758000 8167500 13508000 806530 4254100 3980000 0 0 2345 1950 2060 14330;14331;14332;14333;14334;14335 9382;9383;9384;9385;9386 9384 5 EYPKLYEPGQLNLLFNKR Acetyl (Protein N-term);3 Deamidation (NQ) 2266.1522 0.15215013 1869 Q6P3T1 ATP8B2 yes yes 1 3 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 56.953 57.415 3 0.0064533 21707 20181213_JW_Orientia_Karp_2_1 84.508 30.503 113820000 0 28452000 0 26191000 0 30239000 3521500 25417000 2346 1869 2061 14336;14337;14338;14339;14340 9387;9388;9389;9390 9388 1181;1182;2013 4 EYQDLLNVK Unmodified 1120.5764 0.57643921 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;Q9H319;Q5RLN2;B4DE66;Q59EM6;E7EMV2;B4DJT7;E7ESP9;A5YM63;Q16352;P07197-2;P07197;B4DR43;Q8TCR7;B3KXJ0;B3KQI5;P07196;P12036-2;P12036 HEL113;VIM;tmp_locus_29;DES;NEFM;INA;DKFZp761K0922;NEFL;NEFH Vimentin;Desmin;Alpha-internexin;Neurofilament medium polypeptide;Neurofilament light polypeptide;Neurofilament heavy polypeptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 2 52.072 52.419 2 4.4627E-14 19240 20181213_JW_Orientia_Karp_1_3 231.2 165.96 4097600000 18179000 1431300000 1308800000 377630000 154200000 353450000 425210000 28823000 2347 1571 2062 14341;14342;14343;14344;14345;14346;14347;14348;14349;14350;14351;14352;14353 9391;9392;9393;9394;9395;9396;9397;9398;9399;9400 9394 10 EYQDLLNVK Deamidation (NQ) 1121.5605 0.56045479 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;Q9H319;Q5RLN2;B4DE66;Q59EM6;E7EMV2;B4DJT7;E7ESP9;A5YM63;Q16352;P07197-2;P07197;B4DR43;Q8TCR7;B3KXJ0;B3KQI5;P07196;P12036-2;P12036 HEL113;VIM;tmp_locus_29;DES;NEFM;INA;DKFZp761K0922;NEFL;NEFH Vimentin;Desmin;Alpha-internexin;Neurofilament medium polypeptide;Neurofilament light polypeptide;Neurofilament heavy polypeptide yes no 0 1 0 0 By MS/MS By matching 1 1 53.246 53.463 2 0.0034116 20906 20181213_JW_Orientia_Karp_1_3 119.41 52.237 20788000 0 0 19365000 0 1422900 0 0 0 2348 1571 2062 14354;14355 9401 9401 1046 1 EYQELMNTK Oxidation (M) 1170.5227 0.52268908 799;679 B4E1T1;B4DL32;H0YI76;CON__P13647;P13647 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 28.492 28.768 2 0.037402 6922 20181213_JW_Orientia_Karp_3_1 70.552 39.322 9624900 6271400 0 1909900 0 0 472160 971470 0 + 2349 679;799 2063 14356;14357;14358;14359 9402 9402 1 EYQELMSVK Oxidation (M) 1141.5325 0.53252548 811;590 CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q96GE1;Q6PIN2;B4DRW1;B4DRR7;B4DKJ0;B4DRS2;CON__P19013;P19013 KRT7;KRT4 Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 4 no no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 35.548 36 2 0.0025826 10652 20181213_JW_Orientia_Karp_1_3 113.26 50.792 81212000 0 30485000 33138000 0 0 0 13626000 3963600 + 2350 811;590 2064 14360;14361;14362;14363 9403;9404 9404 362 2 EYQISAGDFPEVK Unmodified 1481.7038 0.70382456 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 55.219 55.623 2 0.00086061 22739 20181213_JW_Orientia_Karp_1_2 142.83 97.462 51132000 0 0 50968000 0 0 0 0 163910 2351 185 2065 14364;14365;14366 9405;9406 9405 2 EYQKDVVCIPNK 2 Deamidation (NQ) 1493.7072 0.70719538 1970 Q9C0D4 ZNF518B Zinc finger protein 518B yes yes 0 2 0 1 By MS/MS 1 25.184 25.435 4 0.035174 5576 20181213_JW_Orientia_Karp_2_3 46.844 14.559 138870 0 0 0 0 0 138870 0 0 2352 1970 2066 14367 9407 9407 2082 0 EYQLNDSAAYYLNDLER Unmodified 2075.9436 0.94361392 1555 P04899;P04899-4;B3KP24;B3KX51;Q96C71;P04899-6;P04899-3;P04899-5;P04899-2;Q93020 GNAI2;WUGSC:H_LUCA16.1 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 65.769 65.969 2 2.4148E-31 29328 20181213_JW_Orientia_Karp_1_1 260.73 190.92 31664000 12234000 8792800 7887600 0 0 0 2748800 0 2353 1555 2067 14368;14369;14370;14371 9408;9409;9410 9408 3 EYQTQLIQR Unmodified 1177.6091 0.60913632 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 2 39.267 39.593 2 0.00080867 13149 20181213_JW_Orientia_Karp_1_1 138.06 63.761 14207000 12616000 0 0 0 0 0 1590400 0 2354 1796 2068 14372;14373;14374 9411;9412 9411 2 EYSNIGSSFLR Unmodified 1271.6146 0.61461563 1323;1448 Karp_01308;Karp_00855;Karp_02495 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.632 52.978 2 0.00022614 19323 20181213_JW_Orientia_Karp_2_3 154.01 99.289 228220000 40601000 65925000 41248000 28628000 28509000 20355000 1745800 1209800 2355 1323;1448 2069 14375;14376;14377;14378;14379;14380;14381;14382 9413;9414;9415;9416;9417;9418;9419;9420 9418 8 EYVDSVMQETVSIIK Oxidation (M) 1755.8601 0.86006721 1091 Karp_00232 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 57.913 58.19 2 2.0995E-78 24527 20181213_JW_Orientia_Karp_1_1 300.27 210.12 38308000 7370300 8774600 10128000 0 5174600 4663600 0 2197300 2356 1091 2070 14383;14384;14385;14386;14387;14388 9421;9422;9423 9421 602 3 EYVDSVMQETVSIIK Unmodified 1739.8652 0.86515259 1091 Karp_00232 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.789 69.933 2 1.9551E-77 31653 20181213_JW_Orientia_Karp_1_2 327.62 230.17 121180000 26529000 17553000 21087000 5419700 14252000 5212700 22026000 9102100 2357 1091 2070 14389;14390;14391;14392;14393;14394;14395;14396 9424;9425;9426;9427;9428;9429;9430;9431 9426 8 EYVESQLQR Unmodified 1150.5619 0.56185177 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 35.345 35.754 2 1.7522E-14 9744 20181213_JW_Orientia_Karp_3_2 229.44 103.62 261110000 0 136780000 70714000 13858000 12000000 7393200 18048000 2321300 2358 25 2071 14397;14398;14399;14400;14401;14402;14403;14404;14405 9432;9433;9434;9435;9436;9437 9437 5 FAAAIGVQFDQSNMLNQRLK 2 Deamidation (NQ) 2252.126 0.12595216 1335 Karp_01394 yes yes 0 2 0 1 By MS/MS 1 57.322 57.521 3 0.040344 23470 20181213_JW_Orientia_Karp_1_3 61.495 20.083 15532000 0 0 15532000 0 0 0 0 0 2359 1335 2072 14406 9438 9438 1840 1 FAAATGATPIAGR Unmodified 1202.6408 0.6407708 71;150 C9J9K3;A0A024R2P0;P08865;Q96RS2;A6NE09;A0A024R7P5 RPSA;RPSAP58;LOC388524 40S ribosomal protein SA no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 41.161 41.461 2 1.3442E-07 14136 20181213_JW_Orientia_Karp_1_1 190.57 127.99 254220000 72459000 82094000 44761000 11399000 14913000 0 28591000 0 2360 71;150 2073 14407;14408;14409;14410;14411;14412 9439;9440;9441;9442;9443 9439 5 FAATTVEEILAK Unmodified 1291.7024 0.702368 106 A0A024R542;Q9C0C2;E9PKK0 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 60.463 60.825 2 2.9793E-07 23575 20181213_JW_Orientia_Karp_2_1 182.64 133.22 20589000 0 7264700 0 1603800 5411400 4986100 0 1323300 2361 106 2074 14413;14414;14415;14416;14417;14418 9444;9445;9446;9447;9448 9445 5 FADASFETTTGYR Unmodified 1464.6521 0.65212334 1364 Karp_01859 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.753 48.098 2 1.167E-24 17764 20181213_JW_Orientia_Karp_1_1 227.36 158.51 463410000 73442000 111120000 112290000 73348000 22157000 33175000 3927300 33949000 2362 1364 2075 14419;14420;14421;14422;14423;14424;14425;14426 9449;9450;9451;9452;9453;9454;9455 9449 5 FADEHVPGSPFTVK Unmodified 1529.7514 0.75144346 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4;Q8WXT3 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 2 47.351 47.669 2;3 0.0055886 17548 20181213_JW_Orientia_Karp_1_1 132.79 84.746 162740000 23512000 73439000 39163000 7241900 1466400 5590800 859570 11463000 2363 1520 2076 14427;14428;14429;14430;14431;14432;14433;14434;14435;14436;14437;14438 9456;9457;9458 9456 3 FADLSEAANR Deamidation (NQ) 1093.504 0.50400254 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 41.613 41.92 2 7.6495E-06 13351 20181213_JW_Orientia_Karp_3_1 174.02 92.726 261200000 97661000 88774000 41245000 9998600 0 3605000 18131000 1782900 2364 1571 2077 14439;14440;14441;14442;14443;14444;14445;14446;14447;14448 9459;9460;9461;9462;9463;9464;9465;9466;9467;9468 9467 1047 10 FADLSEAANR Unmodified 1092.52 0.51998696 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 2 46.208 46.528 2 9.971E-06 16521 20181213_JW_Orientia_Karp_1_2 175.91 106.1 145390000 42672000 32600000 30675000 10319000 5755000 10781000 730400 11853000 2365 1571 2077 14449;14450;14451;14452;14453;14454;14455;14456;14457 9469;9470;9471;9472 9470 4 FADLSEAANRNNDALR 2 Deamidation (NQ) 1777.8231 0.82310485 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 2 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 45.911 46.184 3 0.017042 15466 20181213_JW_Orientia_Karp_2_1 106.29 75.961 379000000 127980000 77757000 99665000 25964000 6380600 9768100 0 31485000 2366 1571 2078 14458;14459;14460;14461;14462;14463;14464 9473;9474 9474 1047;1048;1049 1 FADQHVPGSPFSVK Unmodified 1514.7518 0.75177781 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.477 45.652 3 0.014632 15853 20181213_JW_Orientia_Karp_1_3 71.976 31.603 195190000 63412000 70565000 58910000 0 2300500 0 0 0 2367 1615 2079 14465;14466;14467;14468 9475;9476;9477 9477 3 FADQYPSLK Unmodified 1067.5288 0.52876073 1172 Karp_00626 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 43.874 44.234 2 0.00014525 14429 20181213_JW_Orientia_Karp_3_1 186.41 115.03 537190000 212050000 149260000 87412000 757510 0 0 84498000 3214600 2368 1172 2080 14469;14470;14471;14472;14473;14474 9478;9479;9480;9481 9481 4 FAEEMTDDEMSDLLAK Oxidation (M) 1859.7805 0.78049626 1315 Karp_01271 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 56.838 57.163 2 1.3328E-62 25307 20181213_JW_Orientia_Karp_1_1 272.65 219.63 278690000 67022000 64188000 74615000 17291000 20461000 23534000 3562600 8015500 2369 1315 2081 14475;14476;14477;14478;14479;14480;14481;14482;14483;14484;14485;14486;14487;14488;14489 9482;9483;9484;9485;9486;9487;9488;9489;9490;9491;9492;9493;9494;9495 9484 866;867 14 FAEEMTDDEMSDLLAK 2 Oxidation (M) 1875.7754 0.77541088 1315 Karp_01271 yes yes 0 0 2 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.662 49.007 2 1.6615E-49 16087 20181213_JW_Orientia_Karp_3_2 264.3 203.61 288100000 95322000 65328000 51092000 18377000 15660000 23980000 250460 18086000 2370 1315 2081 14490;14491;14492;14493;14494;14495;14496;14497 9496;9497;9498;9499 9498 866;867 4 FAEQLIR Unmodified 875.4865 0.48650199 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3-2 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.532 44.715 2 0.03049 15539 20181213_JW_Orientia_Karp_1_2 101.28 34.291 0 0 0 0 0 0 0 0 0 2371 2015 2082 14498;14499;14500 9500;9501;9502 9501 3 FAEQNFLNSIK Deamidation (NQ) 1310.6507 0.65066678 1415 Karp_02252 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 3 2 3 1 2 57.904 58.22 2 4.5483E-45 20318 20181213_JW_Orientia_Karp_2_3 276 190.84 425010000 107660000 75678000 136440000 28683000 31062000 39547000 844600 5096300 2372 1415 2083 14501;14502;14503;14504;14505;14506;14507;14508;14509;14510;14511;14512;14513;14514;14515;14516;14517 9503;9504;9505;9506;9507;9508;9509;9510;9511;9512;9513 9512 930;931 10 FAEQNFLNSIK Unmodified 1309.6667 0.6666512 1415 Karp_02252 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 55.838 56.219 2 2.4647E-34 23277 20181213_JW_Orientia_Karp_1_1 256.48 166.73 695640000 195870000 181020000 0 62760000 82557000 69248000 95498000 8679500 2373 1415 2083 14518;14519;14520;14521;14522;14523;14524;14525 9514;9515;9516;9517;9518;9519;9520;9521 9514 8 FAERPALLELER Unmodified 1442.7882 0.78816332 101 B4DLW4;K7EL81;A0A024R4S2;B4DME2;Q9BZL4-2;Q9BZL4-3;Q9BZL4-4;Q9BZL4;K7ER83 PPP1R12C Protein phosphatase 1 regulatory subunit 12C yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 49.441 49.911 3 0.016315 17638 20181213_JW_Orientia_Karp_2_3 88.803 33.719 9318500 0 0 0 5287700 0 3510700 0 520100 2374 101 2084 14526;14527;14528 9522 9522 1 FAFQAEVNR Unmodified 1080.5352 0.53524309 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;Q96GW1;B4DQX3 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 45.665 45.982 2 0.00081965 16015 20181213_JW_Orientia_Karp_1_3 134.77 82.129 129960000 52070000 34022000 36067000 3942600 0 2364100 1490600 0 2375 1598 2085 14529;14530;14531;14532;14533;14534;14535 9523;9524;9525;9526;9527 9525 5 FAGGLHFSGPK Unmodified 1116.5716 0.5716286 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 39.148 39.348 2 0.0095816 13140 20181213_JW_Orientia_Karp_1_1 96.665 62.493 42570000 16496000 16496000 8934100 0 0 644470 0 0 2376 1782 2086 14536;14537;14538;14539 9528 9528 1 FAIEQQNILISNWNK Deamidation (NQ) 1817.9312 0.93119874 748 B8ZZV3;Q8NFR7-2;Q8NFR7-4;Q8NFR7 CCDC148 Coiled-coil domain-containing protein 148 yes no 0 1 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 60.004 60.346 2 0.017144 23299 20181213_JW_Orientia_Karp_2_1 98.156 25.816 109910000 0 29811000 17232000 17796000 22562000 21949000 557540 0 2377 748 2087 14540;14541;14542;14543;14544;14545 9529 9529 242 1 FAIPDGEIDIPSNK Unmodified 1514.7617 0.76167379 1097 Karp_00260 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 61.851 62.127 2 0.0073254 26868 20181213_JW_Orientia_Karp_1_2 114.76 71.482 22196000 21687000 0 0 0 0 0 508940 0 2378 1097 2088 14546;14547;14548 9530;9531 9531 2 FALGIFAINEAVESGDVGK Unmodified 1935.9942 0.99419293 235 A4QPB0;A0A024RC65;P46940;Q6P1N4;H0YLE8;B4E2M0 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 73.938 73.963 2 2.3672E-07 34046 20181213_JW_Orientia_Karp_1_3 160.8 113.74 47427000 19418000 0 18249000 0 5868600 0 3891200 0 2379 235 2089 14549;14550;14551;14552 9532 9532 1 FAMEPEEFDSDTLR Oxidation (M) 1701.7192 0.71921663 1594 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.108 52.453 2 0.00037083 18271 20181213_JW_Orientia_Karp_3_1 147.26 109.93 37799000 6986500 5465000 9673700 4396000 4675300 2642500 3686100 273880 2380 1594 2090 14553;14554;14555;14556;14557;14558;14559;14560 9533;9534;9535;9536 9536 1214 4 FANYIDK Unmodified 869.42832 0.42831841 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 1 1 2 3 38.401 38.748 2 0.0078717 11873 20181213_JW_Orientia_Karp_1_1 153.73 65.972 3937000000 1585500000 936440000 756080000 106770000 218620000 75071000 187140000 71353000 2381 1571 2091 14561;14562;14563;14564;14565;14566;14567;14568;14569;14570;14571;14572;14573;14574;14575 9537;9538;9539;9540;9541;9542;9543;9544;9545;9546 9537 10 FANYIDK Deamidation (NQ) 870.41233 0.41233399 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 1 0 0 By MS/MS 1 39.052 39.602 2 0.030308 12013 20181213_JW_Orientia_Karp_2_1 96.492 33.774 0 0 0 0 0 0 0 0 0 2382 1571 2091 14576 9547 9547 1050 1 FAPVCSICENPIIPR Unmodified 1771.8749 0.87494619 1921 Q8WUP2-3;Q8WUP2 FBLIM1 Filamin-binding LIM protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 61.745 62.123 2 0.034088 23986 20181213_JW_Orientia_Karp_2_2 73.848 41.35 21843000 0 0 10994000 0 6919400 0 910120 3020000 2383 1921 2092 14577;14578;14579;14580 9548 9548 1 FAQDIAGIPEIGAIGR Unmodified 1626.873 0.87295558 1457 Karp_02594 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 67.865 68.066 2 0.0073956 24040 20181213_JW_Orientia_Karp_3_1 122.1 80.987 64071000 18175000 0 16007000 821060 8735600 3131900 12295000 4905600 2384 1457 2093 14581;14582;14583;14584;14585;14586;14587 9549;9550;9551;9552 9551 4 FAQHGTFEYEYSQR Unmodified 1761.7747 0.7746981 1622 Q9BSV4;Q86VG2;P23246;P23246-2;H0Y9K7;Q6PIX2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 38.23 38.52 2;3 8.1419E-05 12586 20181213_JW_Orientia_Karp_1_1 168 99.966 202880000 49740000 14900000 77461000 11388000 14873000 0 34518000 0 2385 1622 2094 14588;14589;14590;14591;14592;14593;14594;14595;14596;14597 9553;9554;9555;9556;9557;9558;9559 9553 7 FAQPGSFEYEYAMR Oxidation (M) 1710.7348 0.73480712 367 A8K525;Q15233-2;Q15233;H7C367;C9JYS8 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.416 51.761 2 0.0040834 19844 20181213_JW_Orientia_Karp_1_2 110.15 78.719 130890000 29771000 27272000 38789000 8712300 7681400 5580200 11174000 1912500 2386 367 2095 14598;14599;14600;14601;14602;14603;14604;14605 9560;9561;9562;9563;9564;9565;9566;9567 9561 253 8 FAQPGSFEYEYAMR Unmodified 1694.7399 0.73989249 367 A8K525;Q15233-2;Q15233;H7C367;C9JYS8 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 56.389 56.589 2 0.042878 23507 20181213_JW_Orientia_Karp_1_1 70.628 46.285 68796000 27177000 39261000 0 0 0 2357800 0 0 2387 367 2095 14606;14607;14608 9568 9568 1 FAQQHQAR Unmodified 984.48896 0.4889616 642 B4DUN7;G3V0I5;Q53G70;E5KNH5;P49821-2;P49821;Q96ID4;B4DE93 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 By MS/MS 1 8.7369 9.3363 2 0.026069 1473 20181213_JW_Orientia_Karp_1_3 100.45 44.44 0 0 0 0 0 0 0 0 0 2388 642 2096 14609 9569 9569 1 FAQSVNFPVFTLNGIGHAR Deamidation (NQ) 2075.0589 0.058858868 1150 Karp_00511 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 68.265 68.448 2;3 5.8369E-07 23892 20181213_JW_Orientia_Karp_3_1 156 113.77 295880000 49037000 13336000 16264000 1045000 80269000 48640000 46701000 40585000 2389 1150 2097 14610;14611;14612;14613;14614;14615;14616;14617;14618;14619;14620;14621;14622;14623;14624 9570;9571;9572;9573;9574;9575;9576;9577;9578;9579 9577 542 10 FASEIAGVDDLGTTGR Unmodified 1607.7791 0.77911477 585 B4DJ81;E5KRK5;P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 55.142 55.432 2 1.2353E-06 22341 20181213_JW_Orientia_Karp_1_2 174.39 124.11 34826000 14917000 8660200 10851000 0 0 0 0 398550 2390 585 2098 14625;14626;14627;14628 9580 9580 1 FASENDLPEWK Unmodified 1334.6143 0.61428128 1672 P43487-2;P43487;C9JJ34;B7Z6U1;B4DE76;C9JXG8;D3DX26;C9JDM3;C9JGV6;C9JIC6 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.002 52.252 2 1.4588E-13 18673 20181213_JW_Orientia_Karp_2_1 223.87 124.86 186390000 33137000 23305000 18852000 51564000 21642000 37886000 0 0 2391 1672 2099 14629;14630;14631;14632;14633;14634;14635;14636 9581;9582;9583;9584;9585;9586;9587;9588;9589 9584 9 FASENDLPEWK Deamidation (NQ) 1335.5983 0.59829686 1672 P43487-2;P43487;C9JJ34;B7Z6U1;B4DE76;C9JXG8;D3DX26;C9JDM3;C9JGV6;C9JIC6 RANBP1 Ran-specific GTPase-activating protein yes no 0 1 0 0 By MS/MS By matching By matching By matching 1 1 1 1 54.585 55 2 0.0059071 20235 20181213_JW_Orientia_Karp_2_1 112.71 55.901 24700000 0 0 0 7605200 7727400 9071800 0 295830 2392 1672 2099 14637;14638;14639;14640 9590 9590 1120 1 FASFIDK Unmodified 826.4225 0.42250475 804;1657;799;341;679;811;793;805;814;796;819;590;809;822 CON__Q3TTY5;H0YHD9;F8VS61;CON__P12035;P12035;CON__Q01546;CON__P07744;F8VRG4;CON__P35908;CON__Q6NXH9;P35908;CON__Q3KNV1;P08729;CON__P08729;B3KY79;CON__Q9DCV7;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;CON__O95678;O95678;B4E1T1;CON__P04259;P04259;B4DKV4;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;B2R853;B4DRY0;Q0IIN1;CON__Q7Z794;Q7Z794;B4DRW1;B4DRR7;B4DKJ0;B4DRS2;CON__P19013;P19013;CON__Q9R0H5;CON__Q14CN4-1;CON__Q6IME9;Q14CN4-3;Q14CN4-2;Q14CN4;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;F8W1S1;Q86Y46-2;Q3SY84;Q7RTS7;Q86Y46 KRT72;KRT77;KRT3;KRT8;KRT2;KRT7;KRT6A;KRT75;KRT6B;KRT5;KRT6C;KRT4;KRT74;KRT73;KRT71 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74 no no 0 0 0 0 By matching By MS/MS 1 1 45.407 45.708 2 0.027706 15367 20181213_JW_Orientia_Karp_2_3 92.47 5.9981 4769600 0 2232500 0 0 0 2537100 0 0 + 2393 814;796;804;1657;811;341;679;793;799;805;819;590;822;809 2100 14641;14642 9591 9591 1 FASFINK Deamidation (NQ) 826.4225 0.42250475 821 Q701L7;CON__Q9NSB4;Q9NSB4 KRTHB2;KRT82 Keratin, type II cuticular Hb2 yes no 0 1 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 2 3 1 45.325 45.575 1;2 2.8563E-06 14852 20181213_JW_Orientia_Karp_2_2 190.71 28.404 497380000 215010000 19264000 232890000 11652000 5219700 11580000 1768400 0 + 2394 821 2101 14643;14644;14645;14646;14647;14648;14649;14650;14651;14652;14653;14654;14655;14656 9592;9593;9594;9595;9596;9597;9598 9596 302 7 FASSDLNELYR Unmodified 1313.6252 0.62518031 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 52.033 52.378 2 9.8777E-26 20271 20181213_JW_Orientia_Karp_1_2 250.92 196.14 540950000 91411000 133940000 188560000 56108000 29296000 39661000 393140 1583100 2395 1169 2102 14657;14658;14659;14660;14661;14662;14663;14664 9599;9600;9601;9602;9603;9604 9600 6 FATHAAALSVR Unmodified 1142.6196 0.61964142 1622 Q9BSV4;Q86VG2;P23246;P23246-2;Q6PIX2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By matching By MS/MS 1 1 33.293 33.743 3 0.035077 8938 20181213_JW_Orientia_Karp_2_1 57.885 29.804 21208000 0 18725000 0 2483500 0 0 0 0 2396 1622 2103 14665;14666 9605 9605 1 FATIALSATQHEYELGNIR Unmodified 2133.0855 0.085467549 1392 Karp_02141 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 56.311 56.705 3 0.0033222 23197 20181213_JW_Orientia_Karp_1_2 137.91 102.14 205630000 87760000 51488000 55061000 10245000 0 0 347230 731360 2397 1392 2104 14667;14668;14669;14670;14671;14672;14673 9606;9607;9608;9609;9610 9607 5 FATIQNLK Unmodified 933.52837 0.5283668 1242 Karp_00909 yes yes 0 0 0 0 By MS/MS 1 41.239 41.688 2 0.040007 13108 20181213_JW_Orientia_Karp_2_1 89.142 31.965 0 0 0 0 0 0 0 0 0 2398 1242 2105 14674 9611 9611 1 FATVSHAPLVK Unmodified 1168.6604 0.66044361 1172 Karp_00626 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 36.063 36.397 3 0.015435 10999 20181213_JW_Orientia_Karp_1_2 99.788 68.03 516100000 157590000 270010000 85043000 2791500 0 329740 333650 0 2399 1172 2106 14675;14676;14677;14678;14679;14680;14681 9612;9613;9614;9615 9613 4 FAVEEIIQK Unmodified 1075.5914 0.59136099 1962 Q9BS40 LXN Latexin yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.622 53.937 2 0.00081611 21189 20181213_JW_Orientia_Karp_1_3 135.83 62.57 79835000 31175000 12865000 18541000 4762900 3738600 8654500 0 98411 2400 1962 2107 14682;14683;14684;14685;14686;14687;14688 9616;9617;9618 9618 3 FAVGIVIGR Unmodified 930.56509 0.56508666 638 B4E0X8;B4DWL1;E9PEB5;B4DT31;Q96AE4;Q96AE4-2;Q6PJY1;Q59FU3;A0A024R8A7;Q96I24-2;Q96I24 FUBP1;hCG_31253;FUBP3 Far upstream element-binding protein 1;Far upstream element-binding protein 3 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.817 58.094 2 0.00071506 20543 20181213_JW_Orientia_Karp_3_2 151.17 95.732 18251000 6465300 1739200 4586500 0 1980700 2746100 0 732690 2401 638 2108 14689;14690;14691;14692;14693;14694;14695 9619;9620;9621;9622;9623 9623 5 FAVTNQIGPVK Unmodified 1172.6554 0.65535823 1794 Q5CZI2;Q14112-2;Q14112;H0YJV3;Q8IV28 DKFZp686D12108;NID2 Nidogen-2 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 46.748 47.038 2 0.026868 16677 20181213_JW_Orientia_Karp_1_3 81.338 57.116 7811800 3114900 0 2314300 1152600 0 0 0 1230100 2402 1794 2109 14696;14697;14698;14699 9624 9624 1 FDAGELITQR Unmodified 1148.5826 0.58258722 354 Q6PUJ7;Q6FHP5;Q53FV0;A8K401;P35232;C9JZ20;E7ESE2;E9PCW0;C9JW96;Q9BSE8 HEL-S-54e;PHB;ZNF607 Prohibitin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 53.038 53.34 2 3.8239E-07 21351 20181213_JW_Orientia_Karp_1_1 192.26 98.834 112530000 40038000 29995000 25032000 5745200 4438600 7085600 0 190150 2403 354 2110 14700;14701;14702;14703;14704;14705;14706 9625;9626 9625 2 FDAGSGMATIR Oxidation (M) 1140.5234 0.52335778 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 35.926 36.227 2 0.0048803 11406 20181213_JW_Orientia_Karp_1_1 102.95 46.145 30898000 15218000 9685800 0 0 743390 776330 4474100 0 2404 195 2111 14707;14708;14709;14710;14711 9627 9627 148 1 FDCHHCNESLFGK Unmodified 1649.6715 0.67149535 1030 Q6I9R8;Q2TSB7;Q2XQU9;J3KNW4;Q14192;Q53QP3;C9J3S8;F8WDA8;U3KQT4;Q5TM15 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 0 0 0 0 By matching By MS/MS 1 1 32.976 33.376 3 0.010549 8397 20181213_JW_Orientia_Karp_2_2 80.318 60.625 5775400 0 0 0 4462800 1312600 0 0 0 2405 1030 2112 14712;14713 9628 9628 1 FDDAVVQSDMK Oxidation (M) 1269.5547 0.55471749 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;P11142-2;Q53HF2;E9PNE6;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;A4D111 HEL-S-72p;HSPA8;LOC401308 Heat shock cognate 71 kDa protein yes no 0 0 1 0 By MS/MS 1 37.759 38.01 2 0.031699 11473 20181213_JW_Orientia_Karp_2_3 90.653 62.254 0 0 0 0 0 0 0 0 0 2406 1586 2113 14714 9629 9629 1205 1 FDDDPIIGK Unmodified 1018.4971 0.49712625 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.356 48.683 2 0.00077952 16967 20181213_JW_Orientia_Karp_2_3 146.81 73.562 230390000 67013000 60768000 51323000 22580000 0 15583000 0 13123000 2407 1320 2114 14715;14716;14717;14718;14719;14720 9630;9631;9632;9633;9634;9635 9634 6 FDDLILVGYK Unmodified 1181.6332 0.6332258 1263 Karp_01030 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 65.721 65.804 2 0.0024583 28531 20181213_JW_Orientia_Karp_1_3 151.44 96 0 0 0 0 0 0 0 0 0 2408 1263 2115 14721;14722;14723 9636;9637;9638 9637 3 FDGALNVDLTEFQTNLVPYPR Unmodified 2408.2012 0.20122559 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;F8VVB9;C9JDS9;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;Q13748-2;Q6PEY2;C9J2C0;Q9NY65-2;Q9NY65;Q7Z3M3 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA3E;TUBA8;DKFZp686L04275 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 74.837 74.852 2 1.5692E-16 34845 20181213_JW_Orientia_Karp_1_1 180.27 125.46 46868000 17667000 16393000 12809000 0 0 0 0 0 2409 512;1887 2116 14724;14725;14726 9639;9640;9641 9639 3 FDGILGMAYPR Oxidation (M) 1254.6067 0.60669348 1009 H7C469;V9HWI3;P07339;F8WD96;C9JH19;F8W787 HEL-S-130P;CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 56.109 56.467 2 0.00017984 23045 20181213_JW_Orientia_Karp_1_2 154.56 90.515 69936000 15586000 12045000 12650000 10835000 8603100 9689600 200690 325490 2410 1009 2117 14727;14728;14729;14730;14731;14732;14733;14734 9642;9643;9644;9645 9642 558 4 FDGILGMAYPR Unmodified 1238.6118 0.61177885 1009 H7C469;V9HWI3;P07339;F8WD96;C9JH19;F8W787 HEL-S-130P;CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 64.768 64.917 2 0.039282 25705 20181213_JW_Orientia_Karp_2_1 74.173 42.886 20329000 11350000 0 5305300 189480 2053200 1431400 0 0 2411 1009 2117 14735;14736;14737;14738;14739 9646 9646 1 FDIEMSMRGDIFER 2 Oxidation (M) 1776.7811 0.78110538 401 E9PCB6;Q9BQD0;B3KU23;A8K9T8;Q9BYT8 NLN Neurolysin, mitochondrial yes no 0 0 2 1 By MS/MS 1 67.418 67.827 2 0.012575 26558 20181213_JW_Orientia_Karp_3_2 88.155 32.349 30708000 0 0 0 0 0 0 0 30708000 2412 401 2118 14740 9647 9647 277;278 0 FDLMYAK Unmodified 886.42588 0.42587556 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;B4DN58;Q15670;A6NHL2-2;A6NHL2;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;Q6PEY2;Q8N532;C9J2C0;Q9NY65-2;Q9NY65;Q7Z3M3;V9GZ17 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA3E;TUBA8;DKFZp686L04275 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain no no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 51.203 51.478 2 0.012023 19743 20181213_JW_Orientia_Karp_1_2 124.89 49.577 52327000 6628400 10064000 32520000 3114300 0 0 0 0 2413 512;1887 2119 14741;14742;14743;14744 9648;9649 9649 2 FDLMYAK Oxidation (M) 902.42079 0.42079019 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;B4DN58;Q15670;A6NHL2-2;A6NHL2;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;Q6PEY2;Q8N532;C9J2C0;Q9NY65-2;Q9NY65;Q7Z3M3;V9GZ17 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA3E;TUBA8;DKFZp686L04275 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.985 45.168 2 0.010628 15614 20181213_JW_Orientia_Karp_1_3 135.87 73.151 0 0 0 0 0 0 0 0 0 2414 512;1887 2119 14745;14746;14747 9650;9651;9652 9652 331 3 FDLSEESK Unmodified 953.43419 0.43419164 1108 Karp_00286 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 38.399 38.743 2 0.00046569 12656 20181213_JW_Orientia_Karp_1_1 190.52 83.223 745900000 451120000 141940000 104580000 7709000 24800000 0 12577000 3162400 2415 1108 2120 14748;14749;14750;14751;14752;14753;14754;14755 9653;9654;9655;9656;9657;9658;9659 9653 7 FDMELDDLPK Unmodified 1221.5587 0.55874023 1638 Q499G7;Q1HBJ4;P28482-2;P28482;B4DHN0 MAPK1 Mitogen-activated protein kinase;Mitogen-activated protein kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 63.201 63.3 2 0.002431 27669 20181213_JW_Orientia_Karp_1_1 153.24 100.08 0 0 0 0 0 0 0 0 0 2416 1638 2121 14756;14757 9660;9661 9660 2 FDMFGDGELLTQVSR Oxidation (M) 1729.7981 0.79813565 1583 P10745 RBP3 Retinol-binding protein 3 yes yes 0 0 1 0 By MS/MS 1 74.929 74.977 2 0.027951 30488 20181213_JW_Orientia_Karp_2_1 74.237 10.543 1806000 0 0 0 1806000 0 0 0 0 2417 1583 2122 14758 9662 9662 1202 1 FDMIVPILEK Oxidation (M) 1219.6522 0.65224669 1791 V9HWF0;Q13418-3;Q13418-2;Q13418 HEL-S-28;ILK Integrin-linked protein kinase yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 63.328 63.511 2 0.010568 27169 20181213_JW_Orientia_Karp_1_3 88.495 62.936 12492000 3140100 1765800 7586100 0 0 0 0 0 2418 1791 2123 14759;14760;14761 9663 9663 1437 1 FDNEDQR Unmodified 922.37807 0.37807375 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 16.615 16.985 2 0.010511 3260 20181213_JW_Orientia_Karp_1_3 143.89 65.271 123400000 27405000 35355000 23085000 5027300 1817600 4263100 5026700 21423000 2419 1296 2124 14762;14763;14764;14765;14766;14767;14768;14769 9664;9665;9666;9667;9668;9669;9670;9671 9666 8 FDPAVSVLDVPEGLK Unmodified 1584.8399 0.83992412 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.083 70.226 2 3.8678E-05 28015 20181213_JW_Orientia_Karp_2_2 171.49 127.06 204830000 60726000 0 51127000 0 19516000 11839000 49582000 12045000 2420 1428 2125 14770;14771;14772;14773;14774;14775;14776 9672;9673;9674;9675;9676;9677;9678 9675 7 FDQLFDDESDPFEVLK Unmodified 1942.8836 0.88363942 832 Q63HR1;Q5VU21;D3DQ69;Q8NC51-4;Q8NC51-3;D3DQ70;Q8NC51-2;Q8NC51 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 74.759 74.779 2 8.9359E-78 27873 20181213_JW_Orientia_Karp_3_1 288.29 212.87 101130000 18898000 15081000 28893000 4037600 11468000 12001000 10749000 0 2421 832 2126 14777;14778;14779;14780;14781;14782;14783 9679;9680;9681;9682;9683;9684;9685 9685 7 FDQLLAEEK Unmodified 1091.5499 0.5498901 47;944;919 A0A024R1N1;P35579;P35579-2;B4E177;A1L2Z2;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;O14729;O14794;Q68D89;F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2 MYH9;MYH14;MYH10;DKFZp686D10126 Myosin-9;Myosin-10;Myosin-14 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.133 45.407 2 0.00061936 15729 20181213_JW_Orientia_Karp_1_3 153.97 32.878 71386000 0 36295000 35090000 0 0 0 0 0 2422 47;944;919 2127 14784;14785;14786 9686;9687;9688 9688 3 FDQWYYVR Unmodified 1175.54 0.53999412 1325 Karp_01349 yes yes 0 0 0 0 By MS/MS By matching 1 1 54.412 54.686 2 0.018745 22267 20181213_JW_Orientia_Karp_1_1 89.698 27.039 11119000 9319400 0 0 1799800 0 0 0 0 2423 1325 2128 14787;14788 9689 9689 1 FDRGYISQYFATNR Unmodified 1736.8271 0.82706802 1296 Karp_01187 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 51.438 51.738 3 0.014506 18477 20181213_JW_Orientia_Karp_2_2 98.676 50.051 104720000 0 24392000 19496000 28625000 13320000 18885000 0 0 2424 1296 2129 14789;14790;14791;14792;14793;14794 9690;9691;9692;9693 9693 4 FDSDAASPR Unmodified 964.42502 0.42502394 915;741;933;2063;858;754 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HLA-C;HLA-Cw;HLA-Cw*03MAC;HLA-Cw*03;HLA-B;HLA-Cw*07;HLA-Cw*0707;HLA-Cw*15P;Cw*08;HLA;HLA-B*0707;HLA-B*4202;HLA-B15;HLA-B52v;HLA-B*5603;HLA-B*;HLA-B*1522;HLA-B*5101 variant;HLA-B*15IL;HLA-B*15MD;HLA-B*51IM;HLA-A;HLA-B*58;HLA-B51;HLA-Cw3;HLA-B52;HLA-B*35JAC;HLA-B18;Cw*03;B*15;B*35;HLA-B*35SRE;HLC-C;HLA-B*5501 variant;HLA-B*18 variant;HLA-CW;HLA-B*1805;HLA -B;HLA-B*27;HEL-S-83;HLA-B27;HLA-Cw* HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, B-27 alpha chain;HLA class I histocompatibility antigen, Cw-3 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 27.283 27.6 2 0.00024257 7232 20181213_JW_Orientia_Karp_1_1 178.94 12.877 38988000 8112600 13025000 10828000 1317900 2363100 0 3341500 0 2425 915;741;754;858;933;2063 2130 14795;14796;14797;14798;14799;14800 9694;9695;9696 9694 3 FDSDAASQR Unmodified 995.43084 0.4308376 268;267;709;857;1906;2066;861;755;2020;862 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4;Q8MHN8;C8ZLL1;A1KWT0;L8B932;I3ZN78;C5IWZ0;C5IWY9;P30459;T2ET92;Q45NE1;Q0GE97;J7RE54;I3VB22;E7BBA3;E0WMV3;E0WMN2;D5GU49;W6JNQ2;A4URH6;Q9GJ45;F6IR39;X5MI18;A0A061DD14;Q9GJ43;X5M4Z2;Q9GJ44;Q5RJ27;B5TZV4;S6AP35;P10314;K0P0J0;A4URG9;A2VBZ8;X2L7S8;E2FIL8;R4QU15;E3SWF7 HLA-A;HLA;HLA-B;HLA-A*03;HLA-A24AK;HLA-All;HLA-A*24;HLA-DRB1;HLA-A*2410;HLA-A26;MHC class I HLA-A;HLA-A*0226;HLA-A*02;HLA A;HLA-A*31;HLA-A*33;HLA-DQB1 HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-23 alpha chain;HLA class I histocompatibility antigen, A-24 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-29 alpha chain;HLA class I histocompatibility antigen, A-43 alpha chain;HLA class I histocompatibility antigen, A-26 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 23.441 23.868 2 0.00056413 5244 20181213_JW_Orientia_Karp_1_2 155.58 12.603 9427300 0 3915600 0 1207300 1039600 679140 1350500 1235100 2426 268;267;709;755;857;1906;2066;861;2020;862 2131 14801;14802;14803;14804;14805;14806;14807 9697;9698;9699;9700;9701;9702 9697 6 FDSETSNAMSDLLGGGK Oxidation (M) 1743.7621 0.76214408 1158 Karp_00578 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.81 48.168 2 1.681E-17 15525 20181213_JW_Orientia_Karp_3_2 209.39 152.83 50466000 14109000 7174100 11824000 6726200 4936400 0 818820 4877200 2427 1158 2132 14808;14809;14810;14811;14812;14813;14814;14815 9703;9704;9705;9706;9707;9708;9709 9709 687 7 FDSETSNAMSDLLGGGK Unmodified 1727.7672 0.76722946 1158 Karp_00578 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 61.462 61.749 2 3.6786E-42 26483 20181213_JW_Orientia_Karp_1_2 252.46 184.73 95801000 38443000 30112000 13870000 0 6612600 3652800 720190 2390200 2428 1158 2132 14816;14817;14818;14819;14820;14821;14822 9710;9711;9712;9713;9714;9715 9711 6 FDSNDVVLLNK Unmodified 1262.6507 0.65066678 1232 Karp_00899 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 54.189 54.467 2 1.6842E-35 21790 20181213_JW_Orientia_Karp_1_2 270.54 198.67 559320000 136150000 188330000 111900000 42862000 35197000 44879000 0 0 2429 1232 2133 14823;14824;14825;14826;14827;14828;14829 9716;9717;9718;9719;9720;9721 9717 6 FDSNDVVLLNK Deamidation (NQ) 1263.6347 0.63468237 1232 Karp_00899 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 1 2 2 55.487 55.851 2 2.0819E-12 22547 20181213_JW_Orientia_Karp_1_1 210.64 109.04 224660000 42850000 70150000 61184000 20494000 16930000 11519000 506330 1029800 2430 1232 2133 14830;14831;14832;14833;14834;14835;14836;14837;14838;14839;14840;14841;14842;14843;14844 9722;9723;9724 9722 635 3 FDTQYPYGEK Unmodified 1246.5506 0.55061839 1643 V9HW71;P30040;F8W1G0 HEL-S-107;ERP29 Endoplasmic reticulum resident protein 29 yes no 0 0 0 0 By MS/MS 1 41.369 41.719 2 0.040581 13886 20181213_JW_Orientia_Karp_1_2 84.817 44.093 0 0 0 0 0 0 0 0 0 2431 1643 2134 14845 9725 9725 1 FDVYNVDSK Unmodified 1085.5029 0.50293991 1904 Q8IYJ1;Q8IYJ1-2 CPNE9 Copine-9 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 45.64 45.957 2 0.0049515 15334 20181213_JW_Orientia_Karp_2_1 104.44 19.694 48076000 15007000 14891000 7876500 7132700 0 2940400 229450 0 2432 1904 2135 14846;14847;14848;14849;14850;14851 9726;9727;9728 9727 3 FEAAETLEEAAMR Oxidation (M) 1482.6661 0.66605885 569 Q7RTQ9;Q7RTQ7;G5E9S8;G3V2E7;B5BU63;F8W6L3;B4DGB3;Q7RTQ8;Q7RTQ2;G3V3H3;Q7RTQ1;Q7RTQ0;Q7RTQ4;G3V5R9;Q7RTP8;E7EVH7;B4DS14;Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9;H0YJU9;H0YJL0;H0YJT3;H0YG16 KNS2;KLC1 Kinesin light chain 1 yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 51.067 51.435 2 0.00039656 19596 20181213_JW_Orientia_Karp_1_3 154.15 102.42 21276000 0 5638200 10106000 0 1948200 2338600 947950 297540 2433 569 2136 14852;14853;14854;14855;14856;14857;14858;14859 9729;9730;9731;9732;9733 9731 352 5 FEDENFILK Unmodified 1153.5655 0.56554017 356;1888 V9HWF5;A8K486;P62937;B2RE56;F8WE65;C9J5S7;P62937-2;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.437 55.753 2 5.9166E-14 20708 20181213_JW_Orientia_Karp_2_1 214.29 115.66 733110000 145150000 103110000 108870000 118550000 116800000 138390000 0 2236400 2434 356;1888 2137 14860;14861;14862;14863;14864;14865;14866 9734;9735;9736;9737;9738;9739;9740 9737 7 FEDENFILK Deamidation (NQ) 1154.5496 0.54955575 356;1888 V9HWF5;A8K486;P62937;B2RE56;F8WE65;C9J5S7;P62937-2;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 1 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 2 1 58.773 59.092 2 0.00044826 22462 20181213_JW_Orientia_Karp_2_2 172.94 84.12 38140000 7934900 3498100 0 6493900 5307000 14839000 67398 0 2435 356;1888 2137 14867;14868;14869;14870;14871;14872;14873;14874;14875 9741;9742;9743;9744 9743 142 4 FEDGGYVVCNTR Unmodified 1415.614 0.6139637 9 Q8WYQ7;B3KWW5;A0A024QZ02;A0A024QZ55;O00182-2;O00182;F8W9W4;J3KSY2;Q3B8N2-2;Q6DKI2;Q3B8N2;J3QSH0;J3KS82;J3KT17;J3QR96 LGALS9;LGALS9C;LGALS9B Galectin;Galectin-9;Galectin-9B;Galectin-9C yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 41.954 42.219 2 0.0020364 13969 20181213_JW_Orientia_Karp_1_3 121.29 73.685 18670000 7813900 4982400 5306900 0 0 0 0 567240 2436 9 2138 14876;14877;14878;14879 9745;9746 9746 2 FEEGENSLLHLK Unmodified 1414.7092 0.70924429 1896 Q86X69 yes yes 0 0 0 0 By MS/MS 1 46.127 46.477 3 0.0015586 16542 20181213_JW_Orientia_Karp_1_2 111.52 64.795 9436700 0 9436700 0 0 0 0 0 0 2437 1896 2139 14880 9747 9747 1 FEEHVQSVDIAAFNK Unmodified 1732.842 0.84204938 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;P29692-4;H0YE72 EEF1D Elongation factor 1-delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.754 50.004 3 0.00056904 17512 20181213_JW_Orientia_Karp_2_2 201.08 162.07 317680000 50567000 54952000 54505000 94280000 37143000 26232000 0 0 2438 1641 2140 14881;14882;14883;14884;14885;14886 9748;9749;9750;9751;9752;9753 9752 6 FEELNADLFR Unmodified 1252.6088 0.60880197 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PNE6;B4E1Q1;E9PN89;A8K7Q2;A0A024R6B5;P54652;B3KUS2 HEL-S-72p;HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 61.286 61.572 2 1.4491E-17 26684 20181213_JW_Orientia_Karp_1_1 231.38 140.67 113860000 40437000 18486000 27559000 2799600 10868000 9899500 0 3808200 2439 1586 2141 14887;14888;14889;14890;14891;14892;14893 9754;9755;9756;9757;9758;9759;9760 9754 7 FEELNMDLFR Unmodified 1312.6122 0.61217279 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 67.961 68.123 2 1.166E-06 30640 20181213_JW_Orientia_Karp_1_1 185.61 117.71 37729000 15395000 0 14043000 0 4246700 2208500 0 1835300 2440 1585 2142 14894;14895;14896;14897;14898;14899 9761;9762;9763;9764;9765 9761 5 FEELNMDLFR Oxidation (M) 1328.6071 0.60708741 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.681 58.974 2 2.8123E-07 24369 20181213_JW_Orientia_Karp_1_3 192.64 146.67 85011000 13969000 30257000 18449000 6851800 8131400 6912900 439090 0 2441 1585 2142 14900;14901;14902;14903;14904;14905;14906 9766;9767;9768;9769;9770;9771 9767 1203 6 FEEPATIFDSK Unmodified 1282.6081 0.60813327 1430 Karp_02387 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 55.502 55.817 2 0.00054283 23066 20181213_JW_Orientia_Karp_1_1 139.43 98.709 178160000 47816000 58950000 33544000 11749000 11418000 14034000 0 649650 2442 1430 2143 14907;14908;14909;14910;14911;14912;14913 9772;9773;9774 9772 3 FEETTADGRK Unmodified 1152.5411 0.54111633 871 E7DVW5;Q01469;I6L8B7 FABP5 Fatty acid-binding protein, epidermal yes no 0 0 0 1 By matching By matching By MS/MS 1 1 1 19.055 19.221 3 0.039681 3408 20181213_JW_Orientia_Karp_2_1 58.246 7.187 2565300 1204000 718650 0 642740 0 0 0 0 2443 871 2144 14914;14915;14916 9775 9775 0 FEEVHGILMYK Unmodified 1364.6799 0.67985842 1690 Q53X91;P49888 SULT1E1 Sulfotransferase;Estrogen sulfotransferase yes no 0 0 0 0 By MS/MS By MS/MS 1 1 49.077 49.252 3 0.0017861 18238 20181213_JW_Orientia_Karp_1_2 105.98 62.556 8269700 3981300 4288400 0 0 0 0 0 0 2444 1690 2145 14917;14918 9776;9777 9777 2 FEHCNFNDVTTR Unmodified 1538.6572 0.6572255 906 E9PNW4;Q6FHM9;E9PR17;P13987 CD59 CD59 glycoprotein yes no 0 0 0 0 By MS/MS By MS/MS 1 1 34.291 34.943 3 0.00048525 9979 20181213_JW_Orientia_Karp_3_1 130.1 63.11 15089000 0 0 0 0 0 0 15089000 0 2445 906 2146 14919;14920 9778;9779 9779 2 FEMEQNLR Oxidation (M) 1081.4862 0.48624399 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 30.108 30.543 2 0.0013356 7139 20181213_JW_Orientia_Karp_3_2 166.68 95.383 335920000 78418000 71465000 0 36806000 26375000 0 30224000 92631000 + 2446 1653 2147 14921;14922;14923;14924;14925;14926;14927;14928;14929 9780;9781;9782;9783;9784;9785;9786;9787 9787 1271 8 FEMEQNLR Unmodified 1065.4913 0.49132937 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 41.057 41.324 2 0.0098137 13019 20181213_JW_Orientia_Karp_3_1 104.44 26.696 417340000 105320000 112770000 96526000 0 16898000 12019000 73811000 0 + 2447 1653 2147 14930;14931;14932;14933;14934;14935 9788;9789;9790;9791;9792 9792 5 FENAFLSHVVSQHQALLGTIR Unmodified 2366.2495 0.24951318 1628 V9HW26;P25705-2;P25705;P25705-3 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 59.215 59.502 4 0.016206 25064 20181213_JW_Orientia_Karp_1_2 62.325 43.286 146790000 74181000 33725000 18615000 5378100 5842500 6515200 0 2532600 2448 1628 2148 14936;14937;14938;14939;14940;14941;14942 9793;9794 9794 2 FENLGVSSLGER Unmodified 1306.6517 0.65172941 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3-2;Q59H15 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 50.172 50.462 2 0.0054084 19055 20181213_JW_Orientia_Karp_1_2 118.61 53.329 33955000 9141400 11941000 11615000 0 0 0 0 1257500 2449 2015 2149 14943;14944;14945;14946 9795 9795 1 FESFPAGSTLIFYK Unmodified 1605.8079 0.80789571 1026 J3KN66;Q5JTV8-3;Q5JTV8;H0Y4R4 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 68.438 68.691 2 0.0033415 31173 20181213_JW_Orientia_Karp_1_1 116.55 46.446 24371000 7331200 0 0 10211000 0 0 3056800 3772500 2450 1026 2150 14947;14948;14949;14950 9796 9796 1 FETDFVAR Unmodified 983.47125 0.47124585 1346 Karp_01522 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.655 46.975 2 9.0399E-05 15835 20181213_JW_Orientia_Karp_2_1 200.12 110.22 564620000 208400000 177800000 71444000 28076000 30395000 38217000 293290 9995500 2451 1346 2151 14951;14952;14953;14954;14955;14956;14957;14958 9797;9798;9799;9800;9801;9802 9799 6 FETLQAQAGK Unmodified 1091.5611 0.56112349 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q96GE1;CON__Q9DCV7;Q3KNV1;Q3B834 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 35.049 35.376 2 0.00021139 9492 20181213_JW_Orientia_Karp_3_2 144.77 73.269 125470000 45403000 29985000 31668000 1902100 0 2064900 0 14449000 + 2452 811 2152 14959;14960;14961;14962;14963;14964;14965 9803;9804;9805 9805 3 FEVNMKER Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1110.5016 0.5015597 898 E9PKJ3;G3V161 KBTBD3 yes no 1 1 1 1 By MS/MS By matching 1 1 14.697 14.971 2 0.022548 2190 20181213_JW_Orientia_Karp_1_3 73.039 6.3568 498250 0 0 238880 259380 0 0 0 0 2453 898 2153 14966;14967 9806 9806 321 514 1 FFANSSDIEYLDDDSLK Unmodified 1977.8844 0.8843677 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.279 65.486 2 2.7496E-215 28253 20181213_JW_Orientia_Karp_1_3 379.77 315.13 179900000 64449000 27151000 37452000 1396900 17986000 11389000 20075000 0 2454 1428 2154 14968;14969;14970;14971;14972;14973;14974 9807;9808;9809;9810;9811;9812;9813;9814;9815 9809 9 FFANSSDIEYLDDDSLK Deamidation (NQ) 1978.8684 0.86838329 1428 Karp_02381 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 2 1 1 69.882 70.012 2 4.4996E-23 32323 20181213_JW_Orientia_Karp_1_1 219.84 152.46 88976000 20312000 20329000 18968000 1352300 6401700 6837700 13585000 1190800 2455 1428 2154 14975;14976;14977;14978;14979;14980;14981;14982;14983;14984;14985;14986 9816;9817;9818;9819;9820;9821 9816 943 5 FFDEALLAQIK Unmodified 1293.6969 0.69688869 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.547 68.776 2 5.36E-06 31044 20181213_JW_Orientia_Karp_1_1 209.6 110.59 22311000 5597700 3377000 4775500 917300 2281200 0 3375900 1986500 2456 1168 2155 14987;14988;14989;14990;14991;14992;14993 9822;9823;9824;9825;9826;9827;9828 9822 7 FFDEESYSLLR Unmodified 1404.6561 0.65614609 324 A6NLM8;P51571 SSR4 Translocon-associated protein subunit delta yes no 0 0 0 0 By MS/MS 1 64.342 64.342 2 0.0039078 28391 20181213_JW_Orientia_Karp_1_1 136.63 97.613 0 0 0 0 0 0 0 0 0 2457 324 2156 14994 9829 9829 1 FFDLNPATR Unmodified 1079.54 0.53999412 1063 Karp_00007 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.835 55.15 2 0.00081745 20297 20181213_JW_Orientia_Karp_2_1 135.43 85.389 526210000 134280000 111420000 111200000 93732000 31350000 43861000 0 366470 2458 1063 2157 14995;14996;14997;14998;14999;15000;15001 9830;9831;9832;9833;9834;9835;9836 9833 7 FFEHFIEGGR Unmodified 1237.588 0.58800695 616;671 F5GYN4;Q659F9;J3KR44;B4DPD5;Q96FW1;F5H6Q1;F5GYJ8;F5H3F0;B3KUV5;Q96FW1-2;B4E053 OTUB1;DKFZp564E242 Ubiquitin thioesterase OTUB1 no no 0 0 0 0 By matching By MS/MS 1 1 50.01 50.284 3 0.0095768 18745 20181213_JW_Orientia_Karp_1_3 102.06 66.52 8727800 0 2143500 6584300 0 0 0 0 0 2459 616;671 2158 15002;15003 9837 9837 1 FFESFGDLSSADAILGNPK Unmodified 2013.9684 0.96837211 812 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 73.532 73.583 2 9.4146E-09 29812 20181213_JW_Orientia_Karp_3_2 194.77 122.09 89963000 45393000 26391000 0 2468200 0 0 0 15711000 + 2460 812 2159 15004;15005;15006;15007;15008 9838;9839;9840;9841 9841 4 FFGDSAASMAIK Unmodified 1243.5907 0.59070906 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z602;E9PJ21;Q05D91;Q6IN67;A0A024R3G0;J3QL06;J3KTF1;Q9BST8;J3QQH7;J3QLE9;B7Z4E6 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 55.056 55.155 2 0.015078 22628 20181213_JW_Orientia_Karp_1_1 105.86 52.693 0 0 0 0 0 0 0 0 0 2461 545 2160 15009;15010 9842;9843 9842 2 FFLSLEDDLMR Oxidation (M) 1400.6646 0.66460229 1374 Karp_02110 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 69.528 69.711 2 0.0044158 31544 20181213_JW_Orientia_Karp_1_2 104.05 37.613 19219000 0 3027700 0 0 5948400 1902200 5474900 2865900 2462 1374 2161 15011;15012;15013;15014;15015;15016;15017 9844;9845;9846 9845 961 3 FFNAVHYCVNK Unmodified 1397.655 0.65504065 1140 Karp_00452 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.897 41.256 3 0.027877 13395 20181213_JW_Orientia_Karp_1_3 67.334 36.444 51351000 13778000 15522000 11647000 2655100 0 0 7661900 87530 2463 1140 2162 15018;15019;15020;15021;15022;15023 9847 9847 1 FFQTACDVPELQDK Unmodified 1696.7767 0.77667193 235 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 55.241 55.424 2 0.002496 22752 20181213_JW_Orientia_Karp_1_1 140.78 75.539 27837000 9665900 9527900 8642800 0 0 0 0 0 2464 235 2163 15024;15025;15026 9848;9849 9848 2 FFRNGDTASPK Deamidation (NQ) 1239.5884 0.58840088 171 B4DNL5;A0A024R8S5;P07237;F5H8J2;B4DLN6;H7BZ94;B4DJS0;I3NI03;I3L3U6;I3L3P5 P4HB Protein disulfide-isomerase yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 30.381 30.769 3 4.3701E-05 7589 20181213_JW_Orientia_Karp_2_1 166.29 106.36 19562000 9153600 0 0 5545600 2420600 0 2441800 0 2465 171 2164 15027;15028;15029;15030;15031 9850;9851;9852;9853 9852 67 4 FFSNDWFPATNNLHR Unmodified 1864.8645 0.86451616 1392 Karp_02141 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 59.54 59.79 3 0.0014941 24898 20181213_JW_Orientia_Karp_1_3 164.2 131.63 182000000 52076000 23960000 49471000 2153600 27029000 27312000 0 0 2466 1392 2165 15032;15033;15034;15035;15036;15037;15038 9854;9855;9856;9857;9858;9859 9856 6 FFSNDWFPATNNLHR Deamidation (NQ) 1865.8485 0.84853174 1392 Karp_02141 yes yes 0 1 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 62.896 63.139 3 0.00041914 27624 20181213_JW_Orientia_Karp_1_1 143.94 111.21 82208000 26569000 1402000 33722000 0 9477500 6621000 0 4416700 2467 1392 2165 15039;15040;15041;15042;15043;15044 9860;9861;9862 9860 890;891 3 FFSNDWFPATNNLHR 2 Deamidation (NQ) 1866.8325 0.83254733 1392 Karp_02141 yes yes 0 2 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 66.76 66.87 3 0.0038186 29323 20181213_JW_Orientia_Karp_1_3 100.73 73.629 14907000 2839300 1202200 3589400 0 3391300 3884900 0 0 2468 1392 2165 15045;15046;15047;15048;15049 9863 9863 890;891 1 FFSNLYITVSEIK Unmodified 1559.8235 0.82354577 1237 Karp_00904 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 69.634 69.768 2 4.6989E-17 31746 20181213_JW_Orientia_Karp_1_1 213.63 155.39 30062000 9191200 0 0 0 7720500 0 13151000 0 2469 1237 2166 15050;15051;15052 9864;9865;9866 9864 3 FFSPQSNAVYLNTSAYNQITSDNLK Unmodified 2821.3559 0.35588833 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 66.292 66.402 3 3.0518E-08 29536 20181213_JW_Orientia_Karp_1_1 139.45 106.71 134100000 51495000 40376000 27521000 0 7163200 7548900 0 0 2470 1428 2167 15053;15054;15055;15056;15057;15058 9867;9868;9869;9870 9867 4 FFSPQSNAVYLNTSAYNQITSDNLK Deamidation (NQ) 2822.3399 0.33990391 1428 Karp_02381 yes yes 0 1 0 0 By MS/MS By matching By matching 1 1 1 69.726 69.826 3 0.0020815 31207 20181213_JW_Orientia_Karp_1_3 88.856 69.477 7657100 0 0 3561000 0 2870200 1225800 0 0 2471 1428 2167 15059;15060;15061 9871 9871 944 1 FFSSGPAFR Unmodified 1014.4923 0.49231565 1179 Karp_00654 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.139 48.441 2 0.0037214 17471 20181213_JW_Orientia_Karp_1_3 110.31 19.269 136130000 31884000 45966000 29545000 12946000 5324600 8135800 0 2329500 2472 1179 2168 15062;15063;15064;15065;15066;15067;15068 9872;9873;9874;9875;9876;9877;9878 9874 7 FFTQGWAGWR Unmodified 1254.5934 0.59342667 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5;Q86TJ9 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 61.693 61.985 2 0.00854 23945 20181213_JW_Orientia_Karp_2_2 96.034 57.071 12169000 0 1992500 3451500 0 2736000 3115600 0 873710 2473 1764 2169 15069;15070;15071;15072;15073;15074 9879;9880;9881;9882 9880 4 FFVSSSQGR Unmodified 1013.493 0.49304393 661 B4DY23;Q54A51;P35613-3;P35613-4;P35613-2;P35613;R4GMX5;I3L192;B4DNE1 hEMMPRIN;BSG Basigin yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 36.873 37.225 2 0.0050017 11304 20181213_JW_Orientia_Karp_1_3 104.2 59.587 25938000 0 2628400 18711000 0 0 2341300 0 2257900 2474 661 2170 15075;15076;15077;15078 9883 9883 1 FFYAVPIK Unmodified 983.54804 0.54803961 1444 Karp_02422 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.968 58.23 2 0.0045671 23900 20181213_JW_Orientia_Karp_1_3 129.16 75.694 168220000 102940000 0 32092000 0 13844000 15834000 0 3516600 2475 1444 2171 15079;15080;15081;15082;15083;15084;15085 9884;9885;9886;9887;9888;9889;9890 9886 7 FGAVDEENQNGQK Deamidation (NQ) 1435.6216 0.6215515 1300 Karp_01233 yes yes 0 1 0 0 By MS/MS 1 32.578 32.928 2 0.024336 9328 20181213_JW_Orientia_Karp_1_2 93.561 48.424 0 0 0 0 0 0 0 0 0 2476 1300 2172 15086 9891 9891 727 1 FGDPVVQSDMK Oxidation (M) 1237.5649 0.56488824 369 A8K5I0;P08107-2;P08107;B4DFN9;B4DNT8;Q59EJ3;B4E388;B4DNX1 HEL-S-103;HSPA1A Heat shock 70 kDa protein 1A yes no 0 0 1 0 By MS/MS 1 38.681 38.932 2 0.0082909 11908 20181213_JW_Orientia_Karp_2_3 96.015 56.867 625000 0 0 0 0 0 625000 0 0 2477 369 2173 15087 9892 9892 263 1 FGFCPMAAHEEICTTNEGVMYR 2 Oxidation (M) 2651.0913 0.091299262 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 2 0 By MS/MS By matching By matching By matching 1 1 1 1 50.24 50.643 3 0.0071618 19035 20181213_JW_Orientia_Karp_1_3 76.118 61.809 16762000 0 0 9755500 0 2106400 0 3753500 1146500 2478 85 2174 15088;15089;15090;15091 9893 9893 95;96 1 FGGEHVPNSPFQVTALAGDQPSVQPPLR Unmodified 2944.4832 0.48315453 1615 P21333-2;P21333;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;H0Y5F3 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 63.703 63.893 3 8.5134E-09 27790 20181213_JW_Orientia_Karp_1_2 131.65 101.63 231370000 83531000 83204000 60683000 0 0 0 0 3948900 2479 1615 2175 15092;15093;15094;15095 9894;9895;9896 9895 3 FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK Unmodified 4091.0653 0.065347814 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 2 2 1 72.325 72.392 3;4 5.0721E-05 29172 20181213_JW_Orientia_Karp_2_2 60.945 47.796 1801400000 181740000 121810000 309860000 136550000 177390000 252430000 617870000 3752800 + 2480 804;1657 2176 15096;15097;15098;15099;15100;15101;15102;15103;15104;15105;15106;15107 9897;9898;9899;9900;9901;9902;9903;9904 9900 8 FGGNPGGFGNQGGFGNSR Unmodified 1725.7608 0.76077937 91 B4DRW3;A0A024R4E2;Q13148;Q13148-4 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 45.532 45.865 2 2.0331E-06 16531 20181213_JW_Orientia_Karp_1_1 150.9 95.504 20466000 9799100 8610100 0 0 0 0 2056600 0 2481 91 2177 15108;15109;15110 9905;9906 9905 2 FGGNPGGFGNQGGFGNSR Deamidation (NQ) 1726.7448 0.74479495 91 B4DRW3;A0A024R4E2;Q13148;Q13148-4 TARDBP TAR DNA-binding protein 43 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 49.373 49.556 2 1.7202E-11 18345 20181213_JW_Orientia_Karp_1_3 180.3 112.37 27623000 8909500 9237000 9476200 0 0 0 0 0 2482 91 2177 15111;15112;15113;15114;15115 9907;9908;9909;9910 9909 48 4 FGGPVHHQAQR Unmodified 1232.6163 0.61628738 1809 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By MS/MS 1 16.764 16.764 3 0.040944 2932 20181213_JW_Orientia_Karp_1_1 52.49 39.568 2415600 2415600 0 0 0 0 0 0 0 2483 1809 2178 15116 9911 9911 1 FGISSVPTK Unmodified 934.51238 0.51238239 977 H0YHG0;P82979;Q567R9;F8VZQ9;A4D286 SARNP;CIP29;LOC402290 SAP domain-containing ribonucleoprotein yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 42.978 43.288 2 0.0044986 13640 20181213_JW_Orientia_Karp_2_2 106.6 42.335 38711000 9275600 9376900 7066400 0 3998000 0 8551200 442670 2484 977 2179 15117;15118;15119;15120;15121;15122;15123 9912;9913 9912 2 FGITMTSTMSSR Oxidation (M) 1333.6006 0.60062182 2021 yes no 0 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 2 71.756 71.839 2 0.027084 26206 20181213_JW_Orientia_Karp_3_1 78.149 25.894 21698000 2447100 1172400 2412100 0 0 1960900 13705000 0 + 2485 2021 2180 15124;15125;15126;15127;15128;15129 9914 9914 1549 1 FGIVTSSAGTGTTEDTEAK Unmodified 1870.8796 0.87961668 977 H0YHG0;P82979;Q567R9;A4D286 SARNP;CIP29;LOC402290 SAP domain-containing ribonucleoprotein yes no 0 0 0 0 By MS/MS 1 45.79 45.79 2 0.011071 16466 20181213_JW_Orientia_Karp_1_1 95.428 48.698 0 0 0 0 0 0 0 0 0 2486 977 2181 15130 9915 9915 1 FGLIPEFLGR Unmodified 1147.639 0.63897988 1435 Karp_02393 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 72.948 72.997 2 0.033058 26941 20181213_JW_Orientia_Karp_3_1 76.17 46.503 42884000 25778000 0 4179500 0 0 0 12926000 0 2487 1435 2182 15131;15132;15133 9916;9917 9917 2 FGLNVSSISR Unmodified 1078.5771 0.57710791 977 H0YHG0;P82979;Q567R9;F8VZQ9;A4D286 SARNP;CIP29;LOC402290 SAP domain-containing ribonucleoprotein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.112 51.373 2 7.5046E-09 18416 20181213_JW_Orientia_Karp_2_3 205.59 122.76 95018000 8902000 13644000 0 33409000 18440000 20624000 0 0 2488 977 2183 15134;15135;15136;15137;15138 9918;9919;9920;9921;9922 9922 5 FGMTPSK Oxidation (M) 782.36328 0.36327531 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 21.731 21.98 2 0.019227 4401 20181213_JW_Orientia_Karp_1_3 98.418 21.044 11041000 2664700 0 5540700 1426400 0 0 1409100 0 2489 1708 2184 15139;15140;15141;15142 9923;9924;9925 9924 1329 3 FGNAFLNR Unmodified 937.477 0.47699993 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 44.432 44.784 2 0.0042041 15398 20181213_JW_Orientia_Karp_1_3 138.37 63.178 28788000 0 17683000 10854000 0 0 0 0 251520 2490 185 2185 15143;15144;15145;15146 9926;9927;9928 9928 3 FGPVVAPK Unmodified 813.47487 0.47487467 1812 Q15942;H0Y2Y8;C9IZ41 ZYX Zyxin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 40.183 40.624 2 0.0043163 12223 20181213_JW_Orientia_Karp_2_2 132.94 75.478 11563000 0 0 0 2457200 3998900 0 4769800 337440 2491 1812 2186 15147;15148;15149;15150 9929;9930 9930 2 FGQAATMEGIGAIGGTPPAFNR Oxidation (M) 2178.0528 0.052787212 367 A8K525;Q15233-2;Q15233 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 58.629 58.829 2;3 2.9608E-06 24621 20181213_JW_Orientia_Karp_1_2 138.98 65.103 90090000 25873000 15531000 44623000 4063000 0 0 0 0 2492 367 2187 15151;15152;15153;15154;15155;15156 9931;9932;9933;9934 9932 254 4 FGQAATMEGIGAIGGTPPAFNR Unmodified 2162.0579 0.05787259 367 A8K525;Q15233-2;Q15233 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS 1 63.944 64.042 2 3.8015E-08 27551 20181213_JW_Orientia_Karp_1_3 229.69 169.53 0 0 0 0 0 0 0 0 0 2493 367 2187 15157 9935 9935 1 FGQGAHHAAGQAGNEAGR Unmodified 1734.7935 0.79347648 1873 Q6UWP8 SBSN Suprabasin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 17.629 17.978 3 0.0080112 3032 20181213_JW_Orientia_Karp_2_1 92.427 74.938 778250 0 0 0 327170 0 0 451080 0 2494 1873 2188 15158;15159 9936;9937 9936 2 FGQGGAGPVGGQGPR Unmodified 1340.6585 0.65854613 1622 Q9BSV4;Q86VG2;P23246 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 33.67 34.043 2 7.2259E-07 10328 20181213_JW_Orientia_Karp_1_1 178.54 130.12 475190000 109450000 106740000 103090000 52444000 39107000 0 42510000 21855000 2495 1622 2189 15160;15161;15162;15163;15164;15165;15166;15167 9938;9939;9940;9941;9942;9943;9944;9945 9938 8 FGQGVHHAAGQAGNEAGR Unmodified 1762.8248 0.82477661 1873 Q6UWP8 SBSN Suprabasin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 18.649 19.022 3 0.016201 3668 20181213_JW_Orientia_Karp_2_3 93.738 62.081 4508600 446780 0 571120 929490 370170 410710 1137800 642520 2496 1873 2190 15168;15169;15170;15171;15172;15173;15174 9946;9947;9948;9949;9950;9951 9949 6 FGSEFSPELQASFQK Unmodified 1700.8046 0.80460124 812 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 58.555 58.805 2 7.5004E-05 24919 20181213_JW_Orientia_Karp_1_1 186.58 123.37 41418000 14238000 6796800 12203000 2697000 2619700 2863400 0 0 + 2497 812 2191 15175;15176;15177;15178;15179;15180 9952;9953;9954 9952 3 FGSGMNMGR 2 Oxidation (M) 987.39024 0.39023512 1701 P52272-2;P52272;Q7KYM9;Q59ES8;M0R019;B4DEG4;M0QZM1;M0QYL3 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 18.895 19.125 2 0.024189 3665 20181213_JW_Orientia_Karp_1_1 73.665 51.705 11555000 5001800 1959100 2810700 0 0 538070 1245200 0 2498 1701 2192 15181;15182;15183;15184;15185 9955;9956;9957 9955 1307;1308 3 FGSILSQYGIQK Unmodified 1339.7136 0.71360139 1144 Karp_00459 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 55.896 56.254 2 1.2624E-31 22516 20181213_JW_Orientia_Karp_1_3 310.21 202.32 681560000 186590000 101190000 100270000 85026000 86442000 65021000 49758000 7270200 2499 1144 2193 15186;15187;15188;15189;15190;15191;15192;15193 9958;9959;9960;9961;9962;9963;9964;9965 9960 8 FGVEQDVDMVFASFIR Oxidation (M) 1874.8873 0.88728501 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;A0A024R609;H3BQ34;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 75.331 75.35 2 4.8699E-09 28145 20181213_JW_Orientia_Karp_3_1 183.96 132.71 55622000 15766000 11223000 9100000 4429800 5724400 4114200 4440900 823210 2500 1597 2194 15194;15195;15196;15197;15198;15199;15200;15201 9966;9967;9968;9969;9970;9971;9972 9971 1218 7 FGVIVLNSPGTIDSDYR Unmodified 1851.9367 0.93667805 1378 Karp_02115 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 66.24 66.34 2 5.0707E-23 29181 20181213_JW_Orientia_Karp_1_2 240.6 185.56 62507000 26864000 22718000 9384600 0 0 3540900 0 0 2501 1378 2195 15202;15203;15204;15205 9973;9974;9975 9974 3 FGYSNNHQTPR Unmodified 1319.6007 0.6006969 1230 Karp_00897 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 23.572 23.987 3 0.031962 5025 20181213_JW_Orientia_Karp_2_3 55.721 25.39 33667000 0 19453000 0 2881800 3013200 1824300 3982700 2511400 2502 1230 2196 15206;15207;15208;15209;15210;15211 9976 9976 1 FGYVDFESAEDLEK Unmodified 1647.7304 0.73043325 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338 NCL Nucleolin yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 63.735 63.944 2 3.0948E-06 25288 20181213_JW_Orientia_Karp_2_1 178.95 113.26 45872000 9800600 11887000 12585000 3026700 0 5754100 0 2818100 2503 88 2197 15212;15213;15214;15215;15216;15217 9977;9978;9979;9980 9977 4 FHDLLSQLDDQYSR Unmodified 1735.8166 0.81656291 1669 P42224;J3KPM9;P42224-2;E7EPD2;D2KFR9;E7ENM1 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 56.082 56.356 3 0.00057655 22973 20181213_JW_Orientia_Karp_1_2 172.58 124.3 64207000 27100000 9343700 25289000 2474500 0 0 0 0 2504 1669 2198 15218;15219;15220;15221 9981;9982;9983 9982 3 FHHTIGGSR Unmodified 1010.5046 0.50461167 73 A0A024R2Q4;P61313;B4DLP4 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 0 0 0 0 By MS/MS 1 13.574 14.025 2 0.033707 2331 20181213_JW_Orientia_Karp_3_1 75.738 38.644 221600 0 0 0 0 0 0 221600 0 2505 73 2199 15222 9984 9984 1 FHPEPYGLEDDQR Unmodified 1601.711 0.71103521 781 Q96FS1;Q68DU0;C9JZR2;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;O60716-7;O60716-5;O60716-3;O60716-6;O60716-4;O60716-2;O60716;E9PRE2 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 40.696 40.879 3 0.022858 13867 20181213_JW_Orientia_Karp_1_1 85.672 49.961 67048000 45558000 12873000 8617100 0 0 0 0 0 2506 781 2200 15223;15224;15225 9985;9986 9985 2 FHQLDIDDLQSIR Unmodified 1598.8053 0.80526994 1603 P16152;E9PQ63;A8MTM1;V9HW40;Q53F60;P16152-2;O75828 CBR1;HEL-S-25;CBR3 Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.976 55.251 3 0.020541 22336 20181213_JW_Orientia_Karp_1_2 71.806 23.762 20628000 0 13447000 7180300 0 0 0 0 0 2507 1603 2201 15226;15227;15228 9987;9988;9989 9988 3 FHSAEITLIK Unmodified 1157.6445 0.64445919 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 2 1 42.43 42.74 2;3 1.501E-06 13873 20181213_JW_Orientia_Karp_2_3 182.76 88.503 664710000 364940000 127790000 68101000 15117000 9882600 9998600 63438000 5445100 2508 1395 2202 15229;15230;15231;15232;15233;15234;15235;15236;15237;15238;15239;15240 9990;9991;9992;9993;9994;9995;9996;9997 9995 8 FHSAEITLIKPLTTELTNEPENSLLSNQLK Unmodified 3379.7875 0.7875012 1395 Karp_02151 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 65.858 66.038 4 0.0084504 29035 20181213_JW_Orientia_Karp_1_2 53.361 35.492 160580000 38742000 63904000 0 0 30302000 9078100 18555000 0 2509 1395 2203 15241;15242;15243;15244;15245 9998;9999;10000 9998 3 FHSQLMR Oxidation (M) 933.44907 0.44907062 1684 P49458;Q8WVW9 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 1 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 19.218 19.576 2 0.019227 2179 20181213_JW_Orientia_Karp_3_2 98.418 61.324 22522000 2185400 4561800 2906400 3706300 2194200 2599500 2713100 1655200 2510 1684 2204 15246;15247;15248;15249;15250;15251;15252;15253 10001;10002;10003;10004 10004 1299 4 FHTTLLEQQDK Unmodified 1358.683 0.68302954 1328 Karp_01362 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 36.112 36.363 2;3 1.7178E-09 11532 20181213_JW_Orientia_Karp_1_1 205.18 115.29 185450000 56275000 79561000 30945000 0 6655600 1629800 10384000 0 2511 1328 2205 15254;15255;15256;15257;15258;15259;15260;15261;15262;15263 10005;10006;10007;10008 10005 4 FIAHVPVPSQQEIEEALVR Unmodified 2161.1532 0.15315318 2004 Q9ULR0;Q9ULR0-2;Q9ULR0-1 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 1 1 64.036 64.316 3 0.00053283 25018 20181213_JW_Orientia_Karp_2_2 107.98 83.084 11303000 0 0 0 0 9459600 0 0 1843300 2512 2004 2206 15264;15265 10009;10010 10009 2 FIDTTLAITSR Unmodified 1236.6714 0.67140222 959 G3XAN8;Q9Y5J9 TIMM8B Mitochondrial import inner membrane translocase subunit Tim8 B yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 56.198 56.668 2 0.00092761 21253 20181213_JW_Orientia_Karp_2_1 154.84 86.473 5510800 0 0 0 3422300 1971200 0 0 117310 2513 959 2207 15266;15267;15268;15269 10011;10012 10011 2 FIDTTLGWTGTTNPYASTK Unmodified 2073.0055 0.0054858935 1271 Karp_01079 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 63.976 64.228 2 3.794E-05 27640 20181213_JW_Orientia_Karp_1_3 143.58 106.21 13920000 0 7086600 6267300 0 0 0 0 566360 2514 1271 2208 15270;15271;15272 10013 10013 1 FIDYDTLAQYLK Unmodified 1488.75 0.75004648 2054 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 78.057 78.019 2 0.0055211 32147 20181213_JW_Orientia_Karp_2_3 106.68 16.931 312020000 49081000 63295000 48000000 8200400 29186000 21002000 93257000 0 + 2515 2054 2209 15273;15274;15275;15276;15277;15278;15279;15280;15281;15282;15283;15284 10014;10015;10016;10017;10018 10017 5 FIEDELQIPVK Unmodified 1329.718 0.71801807 119 B4E1L0;A0A024R5Q7;P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 62.316 62.577 2 0.001071 27277 20181213_JW_Orientia_Karp_1_1 128.35 81.756 20377000 6031000 0 9572300 296610 0 1422300 0 3055000 2516 119 2210 15285;15286;15287;15288;15289;15290 10019;10020;10021;10022 10019 4 FIEIAAR Unmodified 818.46504 0.46503826 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 44.203 44.545 2 0.028142 14410 20181213_JW_Orientia_Karp_2_2 91.906 20.994 61943000 0 36210000 18168000 1588300 1710900 503950 3761100 0 2517 595 2211 15291;15292;15293;15294;15295;15296;15297 10023;10024;10025;10026;10027 10026 5 FIELSTTSVLPK Unmodified 1333.7493 0.74931819 1425 Karp_02312 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 61.274 61.499 2 0.013229 23946 20181213_JW_Orientia_Karp_2_1 92.538 44.833 15078000 7148600 0 5135600 839370 0 1954300 0 0 2518 1425 2212 15298;15299;15300;15301 10028 10028 1 FIFDSLGIQDVVAK Unmodified 1550.8344 0.83444481 1225 Karp_00892 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 73.86 73.881 2 1.4677E-17 34192 20181213_JW_Orientia_Karp_1_2 216.91 162.19 259960000 63282000 81442000 74865000 1573500 19946000 3542000 15305000 0 2519 1225 2213 15302;15303;15304;15305;15306;15307;15308 10029;10030;10031;10032;10033;10034;10035;10036 10030 8 FIFNLGHGILPETPIK Unmodified 1795.0032 0.0032414695 1334 Karp_01374 yes yes 0 0 0 0 By MS/MS 1 68.569 68.569 3 0.021389 30868 20181213_JW_Orientia_Karp_1_1 62.081 22.056 1913500 1913500 0 0 0 0 0 0 0 2520 1334 2214 15309 10037 10037 1 FIGNFVR Unmodified 851.46537 0.46537261 1131 Karp_00376 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 47.436 47.737 2 0.0078881 17633 20181213_JW_Orientia_Karp_1_1 153.67 92.912 889570000 276780000 388000000 117450000 40513000 7297000 52776000 0 6758100 2521 1131 2215 15310;15311;15312;15313;15314;15315;15316 10038;10039;10040;10041;10042 10038 5 FIHNENGANYSVTATR 3 Deamidation (NQ) 1795.8013 0.80130678 887 E9PC41;Q01638-4;Q01638-3;Q01638-2;Q01638 IL1RL1 Interleukin-1 receptor-like 1 yes no 0 3 0 0 By MS/MS By matching 1 1 62.088 62.388 2 0.02252 24666 20181213_JW_Orientia_Karp_2_1 79.23 17.637 191480000 0 0 0 187590000 0 3886600 0 0 2522 887 2216 15317;15318 10043 10043 317;318;319 0 FIHNENGANYSVTATR 2 Deamidation (NQ) 1794.8173 0.81729119 887 E9PC41;Q01638-4;Q01638-3;Q01638-2;Q01638 IL1RL1 Interleukin-1 receptor-like 1 yes no 0 2 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 61.731 62.103 2 0.0020555 23396 20181213_JW_Orientia_Karp_3_2 128.01 35.404 361850000 0 7208000 38422000 0 32195000 0 12497000 271530000 2523 887 2216 15319;15320;15321;15322;15323 10044 10044 317;318;319 1 FIIHAPPGEFNEVFNDVR Unmodified 2100.0429 0.042874453 295 C9JUG7;F8W9N7;Q53GE2;Q53GC7;A4D0V4;P47755-2;P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 63.657 63.85 3 0.020601 24128 20181213_JW_Orientia_Karp_3_2 90.561 54.936 41753000 17912000 0 13916000 249200 3534200 4768000 0 1373600 2524 295 2217 15324;15325;15326;15327;15328;15329 10045;10046 10046 2 FIITAGDAIHSFAVPAFGTK Unmodified 2062.0888 0.088762013 1153 Karp_00558 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.863 69.984 3 0.00178 25084 20181213_JW_Orientia_Karp_3_1 114.58 74.893 143420000 31156000 29458000 14114000 14296000 17227000 8781000 28389000 0 2525 1153 2218 15330;15331;15332;15333;15334;15335;15336 10047;10048;10049;10050;10051;10052 10052 6 FILESDYQDMK Unmodified 1387.633 0.63296781 1416 Karp_02253 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 54.777 55.249 2 0.00065585 22226 20181213_JW_Orientia_Karp_1_2 134.57 47.417 40493000 0 16924000 18330000 4134800 0 0 619400 484070 2526 1416 2219 15337;15338;15339;15340;15341;15342 10053;10054 10054 2 FINASFDK Unmodified 940.46543 0.46543219 1119 Karp_00311 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 42.606 42.876 2 0.013957 13380 20181213_JW_Orientia_Karp_2_2 97.431 29.45 113830000 70984000 17186000 14059000 0 3123500 0 8476500 0 2527 1119 2220 15343;15344;15345;15346;15347 10055;10056;10057 10056 3 FINQSTSR Unmodified 951.47739 0.47739386 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 23.911 24.291 2 0.0073169 5066 20181213_JW_Orientia_Karp_2_1 112.41 24.382 44481000 0 20972000 5042600 2202900 2615700 3753600 4396600 5497900 2528 1341 2221 15348;15349;15350;15351;15352;15353;15354 10058;10059;10060;10061;10062;10063 10059 6 FIPLSEPAPVPPIPNEQQLAR Unmodified 2312.2529 0.25286723 90 H7C3S9;E9PGT6;B2R8N1;A0A024R4D1;Q99627-2;Q99627 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 70.233 70.386 3 0.040174 32093 20181213_JW_Orientia_Karp_1_1 38.577 6.3962 7489600 5055900 1461600 0 0 0 0 0 972100 2529 90 2222 15355;15356;15357 10064 10064 1 FIPVVITEEMVGR Oxidation (M) 1504.796 0.79595081 1238 Karp_00905 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 61.852 62.182 2 2.2067E-07 26386 20181213_JW_Orientia_Karp_1_3 185.96 127.26 253550000 84835000 71279000 49167000 4282700 19670000 10759000 3456000 10100000 2530 1238 2223 15358;15359;15360;15361;15362;15363;15364;15365;15366 10065;10066;10067;10068;10069;10070;10071;10072;10073;10074 10068 800 10 FIPVVITEEMVGR Unmodified 1488.801 0.80103619 1238 Karp_00905 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.83 69.947 2 3.9387E-06 25037 20181213_JW_Orientia_Karp_3_1 179.42 147.58 288800000 120810000 52062000 64551000 0 11456000 7958500 31964000 0 2531 1238 2223 15367;15368;15369;15370;15371;15372;15373 10075;10076;10077;10078;10079;10080;10081;10082 10081 8 FIQTDSQNFFNCLEGINK Unmodified 2174.0103 0.010253695 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 68.522 68.735 2;3 6.7532E-31 30996 20181213_JW_Orientia_Karp_1_1 233.28 156.96 62273000 5562600 0 8691800 0 11997000 9907800 18953000 7160700 2532 1349 2224 15374;15375;15376;15377;15378;15379;15380;15381;15382;15383;15384 10083;10084;10085;10086;10087 10083 5 FISECGR Unmodified 867.39089 0.39088704 1255 Karp_00935 yes yes 0 0 0 0 By matching By MS/MS 1 1 27.292 27.792 2 0.036605 6588 20181213_JW_Orientia_Karp_3_1 85.265 15.882 12115000 0 6150900 0 0 0 0 5964000 0 2533 1255 2225 15385;15386 10088 10088 1 FISLDEYIANLK Unmodified 1424.7551 0.75513185 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.157 72.252 2 3.0325E-79 26461 20181213_JW_Orientia_Karp_3_1 306.19 148.84 1183800000 209940000 186580000 253070000 13626000 131460000 82636000 252460000 54065000 2534 1251 2226 15387;15388;15389;15390;15391;15392;15393;15394 10089;10090;10091;10092;10093;10094;10095;10096;10097;10098;10099 10098 11 FISLDEYIANLK Deamidation (NQ) 1425.7391 0.73914744 1251 Karp_00928 yes yes 0 1 0 0 By MS/MS By matching By MS/MS 1 1 1 72.821 72.904 2 0.015073 33611 20181213_JW_Orientia_Karp_1_1 104.43 50.683 15274000 8819600 3165400 3289400 0 0 0 0 0 2535 1251 2226 15395;15396;15397 10100;10101 10100 649 0 FISQSQSLNIFLPGNCSK Unmodified 2039.0146 0.014610792 1133 Karp_00399 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 65.421 65.662 2 0.00025797 28427 20181213_JW_Orientia_Karp_1_3 156.2 76.538 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D4HPK3;D4HPK2;D4HPK1;D4HPJ6;D4HPJ4;D4HPC1;D4HPB3;D4HPB1;D4HPA0;D4HP92;D4HP87;D4HP86;D4HP82;D4HP77;D3Y5Z9;D3Y5Z3;D3Y5Z2;D3Y5Y7;D3Y5Y6;D3Y2R2;D3XDG3;D3XDG2;D3U776;D3U4B3;D3U4B2;D3U496;D3U469;D3U461;D3U409;D3U404;D3U3Z5;D3U3Z4;D3U3Y3;D3U3X8;D3U3X0;D3U3W9;D3U3W7;D3U3W1;D3U3V1;D3U3U1;D3U3S9;D3U3S5;D3U3S4;D3U3S2;D3U3S1;D3U3S0;D3U3Q9;D3U3N0;D3U3M1;D3U3K8;D3U3K7;D3U3K1;D3U3J8;D3K4I3;D3JWR9;D3JTA6;D2SSL1;D2SSL0;D2DL39;D2DL30;D2DL11;D2DL03;D2DKT1;D2DKT0;D2DKS8;D2DKS4;D2DKS3;D2DKS1;D2DKS0;D2DKR9;D2DKR8;D2DKR7;D2DKR6;D2DKR3;D2DKQ5;D2DKP5;D2DKP0;D2DKM7;D2DKM2;D2DKM0;D2DKL7;D2DKL6;D2DKF3;D1MGM8;D1MER0;D1MEQ9;D1G111;D1G105;D0VE38;D0EP80;C9WEU4;C9WEQ7;C9WEN5;C9WD07;C9WD03;C9WD00;C9WCZ8;C9WCZ7;C9WCY4;C9WCW0;C9WCV6;C9WCV3;C9WCU2;C9WCU1;C9WCU0;C9WCR9;C9E858;C9E856;C9E1H5;C9E1G4;C9E1F9;C8CJC5;C8CH94;C8CH81;C7FDS9;C7FDS8;C7FDR9;C7FDR1;C7ENI0;C7EAF5;C7E598;C7E589;C7E584;C7E574;C7E537;C7C5G6;C5J024;C5J022;C5IZT6;C5IZS3;C5IZL2;C4PJL4;C4PJL3;C4PJL2;C0M134;C0M122;C0M114;C0LAB3;C0LAB1;C0LAA9;C0LAA8;C0KLR5;C0KLQ6;C0KLQ3;C0KLQ1;B9WPP2;B9VPM2;B9VPM1;B8Y6A3;B5B8Y8;B5B8Y7;B3WFG3;B2ZCX5;B2ZCX3;B2ZCW8;B2YG92;B2YG91;B2CYA6;B2CY95;B1PQ30;B0F9N0;A9Z196;A8VYS0;A8VYR9;A8VYR4;A7U966;A3FG62;A2VBY1;A2TEM0;A1Z290;A1DZU1;A0A068B6U8;A0A068B6T8;A0A068B107;A0A024K712;Q9MY47;Q9TP48;Q95HM0;Q95HL9;Q9TQI5;Q9TQI4;Q6KBS5;I2FK81;C9W3P7;A0A060VHC7;A0A060VCZ5;O95733;P79543;Q861B6;C9E1I4;C0KK01;F6IQI5;B7XGC2;Q9TPQ6 HLA-C;HLA-Cw;HLA-Cw*07;HLA-B;HLA-Cw*0707;HLA-B*0707;HLA-B*4202;HLA;HLA-A HLA class I histocompatibility antigen, Cw-7 alpha chain no no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 63.806 64.048 2 0.0018061 25156 20181213_JW_Orientia_Karp_2_3 127.52 2.1611 96259000 0 28664000 52379000 2183100 7781000 4895700 355150 0 2537 915;754;933;709 2228 15403;15404;15405;15406;15407;15408 10103;10104 10104 2 FITFEGNEGSGK Unmodified 1284.5986 0.59863121 1330 Karp_01368 yes yes 0 0 0 0 By MS/MS 1 45.271 45.72 2 0.014161 15175 20181213_JW_Orientia_Karp_2_1 107.09 29.804 0 0 0 0 0 0 0 0 0 2538 1330 2229 15409 10105 10105 1 FITGNGDQSVAK Deamidation (NQ) 1236.5986 0.59863121 1162 Karp_00605 yes yes 0 1 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 39.733 40.06 2 0.0056948 12920 20181213_JW_Orientia_Karp_1_2 115.7 67.098 59673000 21371000 17463000 8612600 0 0 1969700 8697700 1559300 2539 1162 2230 15410;15411;15412;15413;15414;15415 10106 10106 550 1 FITHAPPGEFNEVFNDVR Unmodified 2088.0065 0.0064889465 32 A8K0T9;A0A024R0E5;P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 56.839 57.198 3 0.0013273 23503 20181213_JW_Orientia_Karp_1_2 102.03 61.304 83450000 12763000 15700000 20950000 5128300 0 4090300 21717000 3101700 2540 32 2231 15416;15417;15418;15419;15420;15421;15422 10107;10108;10109;10110 10108 4 FITIFGTR Unmodified 953.53345 0.53345218 1573 V9HWE0;P08758;D6RBL5;D6RBE9 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 60.182 60.482 2 0.013321 25375 20181213_JW_Orientia_Karp_1_3 98.458 46.77 58995000 0 12575000 28537000 2153700 4377000 11352000 0 0 2541 1573 2232 15423;15424;15425;15426;15427 10111;10112;10113;10114;10115 10112 5 FITVGYVDDTLFVR Unmodified 1643.8559 0.85590853 741 B8XPR9;T2MJP9;R7RTM7;R4U4H5;R4KW00;Q8SNC9;Q5XNP8;Q06BD1;N0BQN4;L0BUI6;G4V4C1;F8LFN9;F8LFN8;F8LFN6;E9RKA8;D7GM42;C5J3R3;A3F718;Q9GJF1;F4YTD8;B1GYE9;R4ZGR8;U6BR57;U6BN72;U6BN38;F4NBT0;F4NBS9;F4NBS8;F4NBS7;F4NBS6;F4NBS5;F4NBS4;F4NBS3;F4NBS2;F4NBS1;Q2A133;O19589;Q29934;V9HVZ9;S6FM58;S6FC63;Q7YQB0;Q546J0;Q3BK34;P79612;O78189;C7EXL9;C5MK52;C5MK50;C5IUS6;P03989;Q861E8;F4YTD9;Q1ELT3;W0NX86;W0HIK2;U5IS95;U5IRK0;T1WEP8;T1R3B4;T1R3B1;T1R345;S5CK34;R4I500;R4I3I1;Q9TQM3;Q9TPW5;Q9MYH5;Q9MYG2;Q9MYC9;Q9GIM7;Q9GIK7;Q9BD41;Q95ID7;Q8MHM8;Q861A2;Q860P6;Q7YNX0;Q5ND70;Q5K100;Q5EJW0;Q571R8;Q56SH8;Q50HP8;Q50HP7;Q4JHL0;Q4F7G3;Q2KT94;Q2HY01;Q29760;Q1PBK2;Q1PBK1;Q0PF70;O78142;O02861;N0BYB4;N0BX84;N0BSJ1;N0BP58;M9ZRC7;M9PNX0;M9PNT0;M9P9Z9;M9P9L5;M9P8Z2;M4MD28;M4MD08;L7PF05;K7XHB3;K4JES3;J9UMW5;J9TNT0;J7GL06;J7FM87;J7FK28;J7F7C6;J7F7C4;J7F7B2;I6R709;I4ENX3;I3VZ21;I3QHR5;I2B2Y4;H6A2D3;H2E2A5;H2BEA9;G9I2L4;G3LX85;G3D6K3;G3D6J7;G3CC82;G1EPX5;G1EPX3;G1EPU9;G1EPS1;G1EPQ1;G1EPP7;G1EPJ0;G1ENL5;G1ENG9;G1ENG5;G1ENF5;G1EML7;G1EML6;G1EML1;G0ZMH6;G0Z8D6;G0Z8D3;G0Z8C7;G0KXF1;F8R196;F8R192;F8R179;F8R178;F6KS39;F6KRU4;F6KRT5;F5CJE0;F4ZZU4;F4YZT9;F4YU49;F2X5V4;F2X5U8;F2X5U6;F2X5T9;F2X5T8;F2VYI9;F2VNM8;F1AQN8;E9LY48;E7BYA4;E7BY99;E5BD99;E3SWH2;E2GJM9;E2GJJ3;E2DH85;E2D5P8;E0X9J7;D9IFR1;D7NQW2;D7NQW0;D7NPN7;D7GL14;D6Q000;D6MJF1;D6MJB6;D5M8D7;D5FWD4;D5FI30;D5FI29;D5FI22;D5FI04;D5FHX7;D5FHX0;D5FHW9;D5FHW8;D4HPL4;D3U3V9;D3U3U9;D3U3T3;D3U3T2;D3JTA2;D3G9J1;D2SSK6;D2DKR5;D1MER2;D1FXG4;C9WEQ2;C9WEP7;C9WCY2;C9WCT3;C9WCR8;C9E1F6;C7E597;C5IZU0;C5IZT9;C0KLR7;B6D4Y0;B2ZCW3;B2CYA1;B2CY96;B0LUY6;B0FP46;A9YQA1;A1Z3E0;A1Z289;A0A068B2K5;A9XFY2;R4ZGR6;Q9TQI6;Q9TPS7 HLA-B;HLA-B*27;HEL-S-83;HLA-B27 HLA class I histocompatibility antigen, B-27 alpha chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.612 72.699 2 1.5675E-34 33401 20181213_JW_Orientia_Karp_1_1 254.19 208.28 212590000 62372000 37522000 38304000 6186700 13108000 0 33408000 21691000 2542 741 2233 15428;15429;15430;15431;15432;15433;15434 10116;10117;10118;10119;10120;10121;10122 10116 7 FKAEVQSNRGLTK 2 Deamidation (NQ) 1478.7729 0.77290718 378 K7EM17;K7EK35;Q59GY7;Q59H39;Q8WWS9;A8K6I5;P42229-2;P51692;P42229 STAT5A;STAT5B Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B yes no 0 2 0 2 By MS/MS 1 57.639 58.249 2 0.019818 20678 20181213_JW_Orientia_Karp_3_2 90.149 33.517 7961000 0 0 0 0 0 0 0 7961000 2543 378 2234 15435 10123 10123 145;1419 0 FKDLGEEHFK Unmodified 1248.6139 0.61388734 792 CON__P02769 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 30.268 30.618 3 0.019725 7116 20181213_JW_Orientia_Karp_2_2 115.91 31.604 13926000 2768300 0 1223900 3642800 3317000 0 2973500 0 + 2544 792 2235 15436;15437;15438;15439;15440 10124 10124 1 FKEEISNINEK Unmodified 1349.6827 0.68269519 1344 Karp_01520 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 32.332 32.712 3 0.019214 9183 20181213_JW_Orientia_Karp_1_2 86.288 29.113 40644000 15237000 12389000 0 4782500 2559500 1177500 3298600 1200300 2545 1344 2236 15441;15442;15443;15444;15445;15446;15447 10125;10126 10125 1 FKEQEELLETYLSALGITS Unmodified 2170.1045 0.10453124 1191 Karp_00710 yes yes 0 0 0 1 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 77.216 77.205 2 0.00086975 31793 20181213_JW_Orientia_Karp_2_3 143.56 107.76 46861000 7531500 0 7369400 8576100 0 8145200 15239000 0 2546 1191 2237 15448;15449;15450;15451;15452 10127;10128 10128 2 FKLTPPQPTIMPISIADR Oxidation (M) 2040.1078 0.1077829 1371 Karp_02001 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 60.164 60.484 3 4.2723E-05 23337 20181213_JW_Orientia_Karp_2_1 147.53 99.144 430780000 72122000 52998000 71835000 51795000 74195000 102690000 4106400 1033800 2547 1371 2238 15453;15454;15455;15456;15457;15458;15459;15460;15461 10129;10130;10131;10132;10133;10134;10135;10136 10133 953 8 FKLTPPQPTIMPISIADR Unmodified 2024.1129 0.11286827 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 64.932 65.109 3 1.8776E-06 28076 20181213_JW_Orientia_Karp_1_3 152.59 125.47 157830000 40407000 31983000 48471000 0 22003000 7998300 0 6963500 2548 1371 2238 15462;15463;15464;15465;15466;15467 10137;10138;10139;10140;10141 10138 5 FKMPEMNIK 2 Oxidation (M) 1168.5621 0.56205147 1782 Q09666;Q6ZQN2;B4DTV0;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 2 1 By matching By matching By MS/MS By matching 1 1 1 1 25.736 26.138 3 0.0206 5116 20181213_JW_Orientia_Karp_2_2 66.299 6.1805 6254400 0 0 787440 1734100 1365400 0 0 2367400 2549 1782 2239 15468;15469;15470;15471 10142 10142 1389;1390 0 FLAAGTHLGGTNLDFQMEQYIYK Oxidation (M) 2632.2632 0.26317392 71;150 C9J9K3;A0A024R2P0;P08865;Q96RS2;A0A024R7P5 RPSA;LOC388524 40S ribosomal protein SA no no 0 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 58.995 59.295 3 0.0016719 24919 20181213_JW_Orientia_Karp_1_2 98.443 67.164 40571000 0 7556000 13347000 5972000 7606700 6088700 0 0 2550 71;150 2240 15472;15473;15474;15475;15476 10143;10144;10145 10143 77 3 FLADQQSEIDGLK Unmodified 1462.7304 0.73037367 1589 P12270;Q58F23;Q504U6;Q15624;Q5SWX9 TPR Nucleoprotein TPR yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 51.96 52.268 2 0.0016206 20279 20181213_JW_Orientia_Karp_1_2 130.56 68.969 38304000 9521300 4702200 11494000 5196100 3288500 2243200 1859200 0 2551 1589 2241 15477;15478;15479;15480;15481;15482;15483 10146;10147;10148;10149;10150 10147 5 FLANVSTVLTSK Unmodified 1278.7184 0.71835242 789 CON__P01966 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 56.618 56.976 2 2.0754E-11 21227 20181213_JW_Orientia_Karp_2_2 204.56 164.94 127630000 30854000 24822000 23471000 7144100 18757000 21350000 37725 1194500 + 2552 789 2242 15484;15485;15486;15487;15488;15489;15490;15491 10151;10152;10153;10154;10155;10156;10157 10155 7 FLATTPNSLLVSWQPPR Unmodified 1926.0363 0.036332512 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617;A6YID7;H0Y4K8 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 2 2 2 1 72.007 72.084 2;3 3.0946E-18 29368 20181213_JW_Orientia_Karp_2_3 210.08 165.77 379510000 135430000 36782000 99478000 6879100 16919000 15277000 67319000 1430300 2553 85 2243 15492;15493;15494;15495;15496;15497;15498;15499;15500;15501;15502;15503;15504 10158;10159;10160;10161;10162;10163;10164;10165 10164 8 FLATTPNSLLVSWQPPR Deamidation (NQ) 1927.0203 0.020348097 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617;A6YID7;H0Y4K8 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 0 0 By MS/MS By MS/MS 1 1 72.903 72.953 3 1.8275E-05 33320 20181213_JW_Orientia_Karp_1_3 178.67 138.42 9993000 0 0 0 0 0 0 9993000 0 2554 85 2243 15505;15506 10166;10167 10166 41 2 FLCNMTFLK Unmodified 1172.5722 0.57222223 918 Q59FH1;H0Y4W2;F2Z2U4;Q9Y4A5-2;Q9Y4A5 TRRAP Transformation/transcription domain-associated protein yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 66.649 66.809 1 0.02578 26538 20181213_JW_Orientia_Karp_2_3 79.469 13.17 46509000 13347000 0 11602000 5950100 6205600 3133500 0 6271500 2555 918 2244 15507;15508;15509;15510;15511;15512 10168 10168 1 FLDAGHK Unmodified 786.40244 0.40243801 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 22.071 22.281 2 0.028391 4992 20181213_JW_Orientia_Karp_1_1 91.584 34.121 3804300 1289000 0 781230 598050 578930 557070 0 0 2556 516 2245 15513;15514;15515;15516;15517 10169;10170 10169 2 FLDGIYVSEK Unmodified 1169.5968 0.5968403 847 D6RAN4;Q53Z07;P32969;H0Y9R4;H0Y9V9;Q2NKY6 RPL9 60S ribosomal protein L9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 56.125 56.483 2 0.0025289 22714 20181213_JW_Orientia_Karp_1_3 112.71 64.795 187750000 49676000 40189000 42601000 24524000 14028000 16305000 218970 208130 2557 847 2246 15518;15519;15520;15521;15522;15523;15524;15525 10171;10172;10173;10174;10175 10173 5 FLDNAVQLSR Unmodified 1161.6142 0.6142217 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.248 51.549 2 4.5692E-06 20141 20181213_JW_Orientia_Karp_1_1 184.71 86.247 174750000 49545000 44027000 27834000 23988000 11614000 15589000 0 2156800 2558 1188 2247 15526;15527;15528;15529;15530;15531;15532 10176;10177;10178;10179;10180;10181 10176 6 FLDNNLILVEELK Unmodified 1558.8607 0.86065956 1440 Karp_02409 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 72.456 72.525 2 1.0737E-07 33396 20181213_JW_Orientia_Karp_1_2 191.53 116.14 203000000 58194000 38077000 37252000 10742000 15261000 8862400 23225000 11393000 2559 1440 2248 15533;15534;15535;15536;15537;15538;15539;15540;15541 10182;10183;10184;10185;10186;10187;10188;10189 10183 8 FLDNNLILVEELK Deamidation (NQ) 1559.8447 0.84467514 1440 Karp_02409 yes yes 0 1 0 0 By MS/MS By matching By matching 1 1 1 74.079 74.115 2 0.029152 34349 20181213_JW_Orientia_Karp_1_1 89.663 50.397 16161000 9169000 0 6618900 0 0 0 0 372540 2560 1440 2248 15542;15543;15544 10190 10190 954 1 FLDNVLEDFINK Unmodified 1465.7453 0.74529545 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 74.647 74.672 2 1.2734E-16 34675 20181213_JW_Orientia_Karp_1_1 254.19 147.31 130480000 79088000 26925000 0 1488000 5024900 4746700 13204000 0 2561 1133 2249 15545;15546;15547;15548;15549;15550;15551;15552 10191;10192;10193;10194;10195;10196 10191 6 FLDPKNDVAFK Deamidation (NQ) 1293.6605 0.66050319 1081;1151;1356;1083;1068 Karp_00028;Karp_01794;Karp_00113;Karp_00131;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01685 no no 0 1 0 1 By matching By MS/MS 1 1 47.342 47.517 3 0.036496 17031 20181213_JW_Orientia_Karp_1_2 84.507 29.396 9424900 995140 8429800 0 0 0 0 0 0 2562 1068;1081;1083;1151;1356 2250 15553;15554 10197 10197 1 FLEETVLLEQAFVIDGK Unmodified 1950.035 0.034995108 1346 Karp_01522 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 2 2 2 1 75.229 75.237 2;3 4.7127E-68 30336 20181213_JW_Orientia_Karp_2_2 274.38 221 446910000 159680000 43708000 83405000 30461000 51888000 29116000 48323000 328580 2563 1346 2251 15555;15556;15557;15558;15559;15560;15561;15562;15563;15564;15565;15566;15567 10198;10199;10200;10201;10202;10203;10204 10202 7 FLEHLSGAGK Unmodified 1057.5556 0.55564418 1760 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 0 0 0 0 By MS/MS By matching 1 1 34.111 34.437 3 0.0023939 10532 20181213_JW_Orientia_Karp_1_1 99.788 48.729 12633000 10949000 0 0 0 0 0 1683900 0 2564 1760 2252 15568;15569 10205 10205 1 FLEQLGNDAK Unmodified 1133.5717 0.57168818 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 45.494 45.787 2 9.3841E-09 15211 20181213_JW_Orientia_Karp_2_1 204.34 90.839 448170000 159940000 117300000 114770000 24698000 0 22497000 0 8966200 2565 1251 2253 15570;15571;15572;15573;15574;15575 10206;10207;10208;10209;10210;10211 10209 6 FLEQLGNDAK Deamidation (NQ) 1134.5557 0.55570376 1251 Karp_00928 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 48.545 48.897 2 3.488E-05 16857 20181213_JW_Orientia_Karp_2_1 162.36 63.835 84247000 0 0 25941000 25217000 9476300 9326100 0 14287000 2566 1251 2253 15576;15577;15578;15579;15580 10212;10213 10213 650 2 FLEQQNK Unmodified 905.46068 0.46068117 1571;799;341;679;811;793;805;796;818 CON__P12035;P12035;CON__Q01546;CON__P07744;F8VRG4;U3KPR1;B4DIR1;K7ELP4;K7EJU1;K7EKH9;A0JNT2;CON__Q61726;CON__O43790;B4DN72;A8K872;CON__Q6NT21;CON__P78385;CON__Q14533;CON__P78386;Q8IWY7;O43790;P78385;Q14533;P78386;V9HWE1;P08670;B0YJC4;Q53HU8;B4E192;B4DJW0;P14136-3;P14136;P14136-2;CON__Q3KNV1;P08729;CON__P08729;B3KY79;CON__Q9DCV7;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;CON__O95678;O95678;B4E1T1;CON__P04259;P04259;B4DKV4;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4;Q8N1N4-2 KRT3;KRT8;KRT86;GFAP;KRT83;KRT81;KRT85;HEL113;VIM;KRT7;KRT6A;KRT75;KRT6B;KRT5;KRT6C;KRT78 Keratin, type II cytoskeletal 3;Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb1;Keratin, type II cuticular Hb5;Vimentin;Glial fibrillary acidic protein;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 78 no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 25.639 25.941 2 0.01162 6175 20181213_JW_Orientia_Karp_1_2 139.31 1.2389 1392500000 162590000 295270000 310420000 179050000 133510000 77982000 0 233650000 + 2567 796;1571;811;341;679;793;799;805;818 2254 15581;15582;15583;15584;15585;15586;15587 10214;10215;10216;10217;10218 10214 5 FLEQQNKVLETK 2 Deamidation (NQ) 1477.7664 0.76642482 341;679;796;818 CON__P12035;P12035;CON__Q01546;CON__P07744;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;CON__O95678;O95678;B4E1T1;CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4;Q8N1N4-2 KRT3;KRT6A;KRT75;KRT78 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 78 no no 0 2 0 1 By MS/MS 1 46.937 47.486 2 0.034393 16054 20181213_JW_Orientia_Karp_2_1 112.84 24.788 1534200 0 0 0 1534200 0 0 0 0 + 2568 796;341;679;818 2255 15588 10219 10219 1398 0 FLEQQNQVLETK Unmodified 1475.762 0.76200815 809 CON__Q14CN4-1;CON__Q6IME9;Q14CN4-3;Q14CN4-2;Q14CN4;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;F8W1S1;Q86Y46-2;Q3SY84;Q7RTS7;Q86Y46;H0YIG3 KRT72;KRT74;KRT73;KRT71 Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74 yes no 0 0 0 0 By MS/MS 1 45.615 45.766 2 2.6346E-07 14980 20181213_JW_Orientia_Karp_2_2 181.66 0 9870100 0 0 0 0 9870100 0 0 0 + 2569 809 2256 15589 10220 10220 1 FLEQQNQVLQTK Unmodified 1474.778 0.77799256 804;1657;995;996;819;822 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2;CON__P35908;CON__Q6NXH9;P35908;Q0IIN1;CON__Q7Z794;Q7Z794;CON__Q9R0H5 KRT1;KRT2;KRT77 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 4 2 3 3 1 48.029 48.364 2 2.5322E-51 14511 20181213_JW_Orientia_Karp_2_2 275.48 149.76 6811400000 1406200000 1311600000 860060000 63036000 1153800000 774020000 1145600000 97079000 + 2570 995;996;804;1657;819;822 2257 15590;15591;15592;15593;15594;15595;15596;15597;15598;15599;15600;15601;15602;15603;15604;15605;15606;15607;15608;15609 10221;10222;10223;10224;10225;10226;10227;10228;10229;10230;10231;10232;10233;10234;10235 10226 14 FLEQQNQVLQTK Deamidation (NQ) 1475.762 0.76200815 804;1657;995;996;819;822 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2;CON__P35908;CON__Q6NXH9;P35908;Q0IIN1;CON__Q7Z794;Q7Z794;CON__Q9R0H5 KRT1;KRT2;KRT77 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 4 3 3 3 2 46.441 46.754 2 3.1432E-79 15939 20181213_JW_Orientia_Karp_3_1 311.02 118.11 786320000 155950000 141530000 152010000 96023000 56999000 80994000 22725000 80090000 + 2571 995;996;804;1657;819;822 2257 15610;15611;15612;15613;15614;15615;15616;15617;15618;15619;15620;15621;15622;15623;15624;15625;15626;15627;15628;15629;15630;15631;15632;15633;15634 10236;10237;10238;10239;10240;10241;10242;10243;10244;10245;10246;10247;10248;10249 10247 294;1658;1659;1660 13 FLEQQNQVLQTKWELLQQVDTSTR Unmodified 2931.509 0.50903493 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 64.7 64.892 3 0.0077428 28707 20181213_JW_Orientia_Karp_1_1 74.222 0 57021000 17332000 24934000 0 0 6606700 6117400 0 2030300 + 2572 995;996 2258 15635;15636;15637;15638;15639 10250 10250 1 FLEQVHQLYDDSFPMEIR Unmodified 2266.0729 0.072853952 1669 P42224;J3KPM9;P42224-2;E7EPD2;D2KFR9;E7ENM1;Q67C41;E9PH66 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 0 0 0 0 By MS/MS 1 68.423 68.423 3 0.0030054 30778 20181213_JW_Orientia_Karp_1_1 134.93 67.284 8304000 8304000 0 0 0 0 0 0 0 2573 1669 2259 15640 10251 10251 1 FLESLPEEEQQR Unmodified 1503.7205 0.72053726 397 B4DNQ1;E9PKP7;A8K962;P17480-2;P17480;B4DLB0;O00164 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 48.982 49.298 2 2.4394E-05 18100 20181213_JW_Orientia_Karp_1_3 184.71 118.65 96003000 23734000 39916000 20912000 0 3210300 4388100 95495 3746100 2574 397 2260 15641;15642;15643;15644;15645;15646;15647 10252;10253;10254;10255 10254 4 FLGTGEK Unmodified 750.3912 0.39120462 1270 Karp_01078 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 28.958 29.259 2 0.023841 7518 20181213_JW_Orientia_Karp_1_3 97.473 14.186 29800000 6850800 10343000 5854900 0 2516200 1204200 3031000 0 2575 1270 2261 15648;15649;15650;15651;15652;15653 10256 10256 1 FLGTILDADIASK Unmodified 1362.7395 0.73948179 1086 Karp_01301;Karp_00209 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 66.012 66.247 2 1.7365E-17 28894 20181213_JW_Orientia_Karp_1_3 221.32 95.602 204710000 0 65548000 52963000 0 49388000 20040000 3653700 13122000 2576 1086 2262 15654;15655;15656;15657;15658;15659;15660 10257;10258;10259;10260;10261 10259 5 FLIDGFPR Unmodified 963.5178 0.51780212 461 B2R6S5;P30085-2;P30085;B4DDL4;Q5T0D2;B4DFW6 CMPK;CMPK1 UMP-CMP kinase yes no 0 0 0 0 By MS/MS 1 63.385 63.583 2 0.0053276 27198 20181213_JW_Orientia_Karp_1_3 129.68 44.619 0 0 0 0 0 0 0 0 0 2577 461 2263 15661 10262 10262 1 FLIEMADTVQEK Unmodified 1422.7065 0.7064671 667 H3BUD4;B4DYZ4;Q15111-2;Q15111 PLCL1 Phosphoinositide phospholipase C;Inactive phospholipase C-like protein 1 yes no 0 0 0 0 By MS/MS 1 45.63 46.281 2 0.018368 15423 20181213_JW_Orientia_Karp_3_1 101.46 24.172 0 0 0 0 0 0 0 0 0 2578 667 2264 15662 10263 10263 1 FLILPDMLK Oxidation (M) 1104.6253 0.62530365 1734 P62318-2;P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 1 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 65.168 65.361 2 0.012816 25056 20181213_JW_Orientia_Karp_3_2 86.953 27.708 9442700 2542600 0 1803800 61864 3287200 1514600 0 232710 2579 1734 2265 15663;15664;15665;15666;15667;15668 10264;10265 10265 1361 2 FLIPNASQAESK Unmodified 1303.6772 0.67721588 824 D0PNI1;P63104;E7EX29;B0AZS6;P63104-2;E7ESK7 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.239 48.585 2 0.0012087 17821 20181213_JW_Orientia_Karp_1_2 131.42 64.988 564940000 140160000 145460000 119770000 73077000 18930000 31285000 1151200 35105000 2580 824 2266 15669;15670;15671;15672;15673;15674;15675;15676 10266;10267;10268;10269;10270 10267 5 FLLHASK Unmodified 814.47012 0.47012364 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 28.469 28.842 2 0.011563 6847 20181213_JW_Orientia_Karp_3_1 119.57 39.011 39200000 6319800 19879000 6761700 818750 882230 0 2473800 2064500 2581 1066 2267 15677;15678;15679;15680;15681;15682;15683 10271;10272;10273 10272 3 FLNAENAQK Unmodified 1033.5193 0.51925868 1672 P43487-2;P43487;C9JXG8;D3DX26;C9JGV6;B3KUP2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 By MS/MS By matching 1 1 30.205 30.38 2 0.035042 8494 20181213_JW_Orientia_Karp_1_1 74.92 6.9273 38454000 14526000 23928000 0 0 0 0 0 0 2582 1672 2268 15684;15685 10274 10274 1 FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR Unmodified 3626.6397 0.63972734 851 Q5HYD9;D6RFH4;H3BUX2;J3KNF8;O43169 DKFZp686M0619;CYB5B Cytochrome b5 type B yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 62.992 63.175 4 0.0017738 27547 20181213_JW_Orientia_Karp_1_1 57.222 34.662 116220000 50876000 34027000 31320000 0 0 0 0 0 2583 851 2269 15686;15687;15688 10275 10275 1 FLNLSNN Unmodified 820.40792 0.40791731 1106 Karp_00284 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 2 1 2 1 1 2 1 1 56.13 56.431 1;2 0.011178 22687 20181213_JW_Orientia_Karp_1_3 124.34 65.362 209090000 51757000 51123000 38375000 20783000 12265000 24829000 8336400 1625900 2584 1106 2270 15689;15690;15691;15692;15693;15694;15695;15696;15697;15698;15699 10276;10277;10278;10279 10277 4 FLNQNIR Unmodified 903.49265 0.49265 1421 Karp_02305 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 35.694 36.059 2 0.034375 10768 20181213_JW_Orientia_Karp_1_3 86.512 29.965 48977000 25675000 0 17932000 0 0 0 4315300 1055100 2585 1421 2271 15700;15701;15702;15703 10280 10280 1 FLPLFDR Unmodified 906.49634 0.49633839 745 Q9UNM1;B8ZZL8;P61604;S4R3N1 EPFP1;HSPE1;HSPE1-MOB4 10 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 63.031 63.323 2 0.036605 24484 20181213_JW_Orientia_Karp_2_2 85.265 38.914 20695000 0 7353600 4137100 0 2340200 4606400 0 2257600 2586 745 2272 15704;15705;15706;15707;15708 10281 10281 1 FLPNLQNVSLFSDSLK Unmodified 1820.9672 0.96724989 1165 Karp_00617 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.965 73.035 2 2.6225E-49 33351 20181213_JW_Orientia_Karp_1_3 264.09 193.06 859560000 178570000 117880000 169630000 69506000 51755000 38634000 156030000 77563000 2587 1165 2273 15709;15710;15711;15712;15713;15714;15715;15716 10282;10283;10284;10285;10286;10287;10288;10289 10284 8 FLQDNNFEK Unmodified 1153.5404 0.54038805 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 41.361 41.677 2 0.0048124 14236 20181213_JW_Orientia_Karp_1_1 105.1 34.182 89430000 29273000 24539000 14086000 5364100 0 6411600 9756000 0 2588 1358 2274 15717;15718;15719;15720;15721;15722 10290;10291;10292;10293 10290 4 FLQDYFDGNLK Unmodified 1358.6507 0.65066678 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 61.789 61.979 2 1.9022E-07 26681 20181213_JW_Orientia_Karp_1_2 190.57 91.941 72398000 18396000 19641000 11561000 0 11763000 11037000 0 0 2589 516 2275 15723;15724;15725;15726;15727;15728;15729 10294;10295;10296;10297;10298;10299;10300 10295 7 FLQEHGSDSFLAEHK Unmodified 1743.8216 0.82164829 1758 Q53GD8;Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP3 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 1 2 2 2 1 38.044 38.324 3;4 5.3935E-14 11444 20181213_JW_Orientia_Karp_2_1 207.08 161.87 104360000 32203000 15553000 25103000 14733000 8227800 0 8541400 0 2590 1758 2276 15730;15731;15732;15733;15734;15735;15736;15737;15738;15739 10301;10302;10303;10304 10302 4 FLSDPQVHTVLVER Unmodified 1638.873 0.87295558 1796 Q14204;B4DSR6 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 49.103 49.495 3 0.040472 18388 20181213_JW_Orientia_Karp_1_2 45.79 4.2127 60604000 0 25597000 23646000 5461400 0 3486200 0 2413500 2591 1796 2277 15740;15741;15742;15743;15744 10305;10306 10305 2 FLSLTEDIK Unmodified 1064.5754 0.57537657 1116 Karp_00304 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 55.89 56.04 2 0.0018747 23208 20181213_JW_Orientia_Karp_1_1 119.27 35.474 24685000 18842000 0 3601600 0 2241700 0 0 0 2592 1116 2278 15745;15746;15747 10307 10307 1 FLSNGHVTIPGQQDK Deamidation (NQ) 1640.8158 0.81583463 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 2 2 46.798 47.122 2;3 6.8289E-10 17132 20181213_JW_Orientia_Karp_1_2 194.98 102.14 776600000 233560000 254130000 212260000 26897000 10479000 20528000 2880500 15871000 2593 47 2279 15748;15749;15750;15751;15752;15753;15754;15755;15756;15757;15758;15759;15760;15761;15762;15763;15764;15765 10308;10309;10310;10311;10312;10313;10314;10315;10316;10317;10318;10319;10320;10321 10313 17 14 FLSQPFQVAEVFTGHMGK Unmodified 2022.0033 0.003317824 1560 Q0QEN7;V9HW31;P06576 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS By matching 1 1 67.986 68.012 3 0.025651 30642 20181213_JW_Orientia_Karp_1_1 55.094 24.52 17105000 14319000 0 0 0 0 2785300 0 0 2594 1560 2280 15766;15767 10322 10322 1 FLSQPFQVAEVFTGHMGK Oxidation (M) 2037.9982 0.99823245 1560 Q0QEN7;V9HW31;P06576 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 63.647 63.809 3 0.018296 24047 20181213_JW_Orientia_Karp_3_2 78.249 43.161 39050000 9429100 0 16538000 0 5940600 4392000 0 2750000 2595 1560 2280 15768;15769;15770;15771;15772 10323 10323 1171 1 FLSSNEVPESVIMQEK Oxidation (M) 1851.8924 0.89242997 1346 Karp_01522 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 53.92 54.242 2 9.5051E-28 19182 20181213_JW_Orientia_Karp_3_1 228.93 145.79 907570000 224200000 156210000 269140000 95812000 80337000 71111000 10759000 0 2596 1346 2281 15773;15774;15775;15776;15777;15778;15779;15780 10324;10325;10326;10327;10328;10329;10330;10331 10331 913 8 FLSSNEVPESVIMQEK Unmodified 1835.8975 0.89751535 1346 Karp_01522 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 58.176 58.496 2 2.0337E-49 24114 20181213_JW_Orientia_Karp_1_3 265.77 158.75 829190000 193990000 256270000 268100000 25316000 33879000 31907000 280920 19451000 2597 1346 2281 15781;15782;15783;15784;15785;15786;15787;15788 10332;10333;10334 10334 3 FLSSNEVPESVIMQEK Deamidation (NQ) 1836.8815 0.88153093 1346 Karp_01522 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 61.812 62.073 2 0.0023659 26899 20181213_JW_Orientia_Karp_1_1 124.16 45.615 91475000 27457000 15462000 39284000 0 5710400 0 0 3560900 2598 1346 2281 15789;15790;15791;15792;15793 10335 10335 788 1 FLSSNEVPESVIMQEK Oxidation (M);Deamidation (NQ) 1852.8764 0.87644556 1346 Karp_01522 yes yes 0 1 1 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 57.116 57.461 2 0.0060578 23362 20181213_JW_Orientia_Karp_1_3 104.55 30.883 103740000 20586000 24793000 19145000 10004000 10249000 7981400 194700 10787000 2599 1346 2281 15794;15795;15796;15797;15798;15799;15800;15801 10336;10337 10336 788 913 2 FLSYKFSNSGSR Deamidation (NQ) 1392.6674 0.66737948 194 Q6DN23;A0A024RA96;P14555 PLA2G2A Phospholipase A(2);Phospholipase A2, membrane associated yes no 0 1 0 1 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 33.674 33.849 3 0.010133 10230 20181213_JW_Orientia_Karp_1_1 105.13 58.095 78997000 34644000 44353000 0 0 0 0 0 0 2600 194 2282 15802;15803;15804;15805 10338;10339;10340 10338 79 3 FLTQPFHVAEVFTGK Unmodified 1719.8984 0.89844205 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 2 60.992 61.294 2;3 1.8672E-06 26243 20181213_JW_Orientia_Karp_1_2 163.33 93.682 427470000 134470000 20188000 86062000 12432000 58113000 66591000 15915000 33697000 2601 1341 2283 15806;15807;15808;15809;15810;15811;15812;15813;15814;15815;15816;15817;15818;15819 10341;10342;10343;10344;10345;10346;10347;10348;10349;10350 10342 9 FLVASNTNTSNNYQK Deamidation (NQ) 1700.8006 0.8005785 1443 Karp_02418 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 4 3 2 1 1 1 2 41.988 42.265 2 4.1787E-13 13627 20181213_JW_Orientia_Karp_1_2 205.12 129.47 130770000 18350000 44834000 35360000 2314700 12624000 2530600 14756000 0 2602 1443 2284 15820;15821;15822;15823;15824;15825;15826;15827;15828;15829;15830;15831;15832;15833 10351;10352;10353;10354;10355;10356;10357 10354 958;959;960 5 FLVASNTNTSNNYQK Unmodified 1699.8166 0.81656291 1443 Karp_02418 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 39.106 39.531 2 6.2688E-38 12521 20181213_JW_Orientia_Karp_1_3 254.07 175.04 36592000 0 0 26627000 0 0 0 9964700 0 2603 1443 2284 15834;15835 10358;10359 10358 2 FLVGFTNK Unmodified 924.5069 0.50690308 459 C9J3L8;C9J5W0;B2R6N9;E9PAL7;C9IZQ1;P43307;P43307-2 SSR1 Translocon-associated protein subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.352 51.602 2 0.016469 19817 20181213_JW_Orientia_Karp_1_2 93.374 38.609 41440000 14043000 13208000 5826700 4178600 1323600 2860000 0 0 2604 459 2285 15836;15837;15838;15839;15840;15841 10360;10361;10362 10361 3 FLVGPDGVPLR Unmodified 1168.6604 0.66044361 1564 Q7L4Q3;P07203;Q6NSD4 GPX1 Glutathione peroxidase;Glutathione peroxidase 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 59.697 60.009 2 0.022866 25356 20181213_JW_Orientia_Karp_1_2 83.647 39.996 15042000 0 6939300 5134600 486940 2481100 0 0 0 2605 1564 2286 15842;15843;15844;15845 10363;10364 10363 2 FMCSQLPNQVLK Oxidation (M) 1479.7214 0.72140566 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 1 0 By MS/MS By matching 1 1 48.135 48.435 2 0.039797 17744 20181213_JW_Orientia_Karp_1_2 70.399 13.588 27200000 0 25158000 0 0 0 2042000 0 0 2606 185 2287 15846;15847 10365 10365 1 FMEQVIFK Unmodified 1040.5365 0.53648865 201 A0A024RAI1;P61158;B4DXW1;B4DT29;Q59FV6;B4E1U3 ACTR3 Actin-related protein 3 yes no 0 0 0 0 By MS/MS By matching 1 1 56.448 56.749 2 0.034849 23260 20181213_JW_Orientia_Karp_1_2 79.906 27.19 17436000 0 14544000 0 0 0 2892000 0 0 2607 201 2288 15848;15849 10366 10366 1 FMETATESLAK Oxidation (M) 1242.5802 0.58020395 816 CON__Q58D62 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 36.986 37.287 2 0.0032621 11127 20181213_JW_Orientia_Karp_3_1 109.83 87.744 81326000 25427000 22270000 16639000 0 5114800 0 11876000 0 + 2608 816 2289 15850;15851;15852;15853;15854;15855 10367;10368;10369 10369 476 3 FMETATESLAK Unmodified 1226.5853 0.58528933 816 CON__Q58D62 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 2 1 43.971 44.328 2 0.00073589 15424 20181213_JW_Orientia_Karp_1_2 133.23 40.788 92541000 24588000 23794000 13059000 0 2127700 0 27997000 974610 + 2609 816 2289 15856;15857;15858;15859;15860;15861;15862;15863 10370;10371;10372 10371 3 FMLYSPLISSIELIK Oxidation (M) 1768.9685 0.96849545 1389 Karp_02137 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 75.032 75.051 2 2.2339E-27 34629 20181213_JW_Orientia_Karp_1_3 227.81 154.37 113120000 26829000 17529000 33230000 8936100 9222900 5277300 11698000 399320 2610 1389 2290 15864;15865;15866;15867;15868;15869;15870;15871 10373;10374;10375;10376;10377;10378;10379;10380;10381 10376 984 9 FMLYSPLISSIELIK Unmodified 1752.9736 0.97358083 1389 Karp_02137 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 75.897 75.906 2 0.0055535 35584 20181213_JW_Orientia_Karp_1_1 104.79 74.656 25320000 8373200 0 12108000 739960 0 0 2772000 1326300 2611 1389 2290 15872;15873;15874;15875;15876 10382 10382 1 FMTGLDTKNNVK Deamidation (NQ) 1367.6755 0.67550132 503 B7XCW9;B2RUU2;O95477 ABCA1 ATP-binding cassette sub-family A member 1 yes no 0 1 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 21.671 21.941 3 0.02391 4216 20181213_JW_Orientia_Karp_3_1 77.288 11.265 18866000 3193500 4068000 8089400 0 1982500 0 1532200 0 2612 503 2291 15877;15878;15879;15880;15881 10383 10383 186 0 FMVLEAGLSDK Unmodified 1208.6111 0.61111015 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 57.87 58.159 2 0.00062582 24562 20181213_JW_Orientia_Karp_1_1 135.86 82.108 70411000 26965000 19397000 21127000 0 0 0 0 2923300 2613 1458 2292 15882;15883;15884;15885 10384;10385;10386;10387 10384 4 FMVLEAGLSDK Oxidation (M) 1224.606 0.60602477 1458 Karp_02603 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 52.544 52.89 2 0.003152 19050 20181213_JW_Orientia_Karp_2_1 110.38 56.888 215380000 52147000 51322000 41007000 27553000 16247000 23372000 2835900 894820 2614 1458 2292 15886;15887;15888;15889;15890;15891;15892;15893 10388;10389;10390;10391;10392;10393 10390 1073 6 FNAALQDTNNNVVVEK Unmodified 1774.885 0.88497683 1256 Karp_00936 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 46.434 46.609 2 3.3747E-05 16960 20181213_JW_Orientia_Karp_1_1 154.13 91.965 98536000 61664000 36872000 0 0 0 0 0 0 2615 1256 2293 15894;15895 10394;10395 10394 2 FNAALQDTNNNVVVEK Deamidation (NQ) 1775.869 0.86899241 1256 Karp_00936 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 3 1 3 2 2 2 48.775 49.086 2 1.6822E-19 18064 20181213_JW_Orientia_Karp_1_1 217.68 119.86 219950000 40708000 46445000 59497000 15658000 14485000 14983000 1110600 27066000 2616 1256 2293 15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907;15908;15909;15910;15911 10396;10397;10398;10399;10400;10401;10402;10403;10404;10405;10406;10407 10396 665;666;667;668 9 FNAALQDTNNNVVVEK 2 Deamidation (NQ) 1776.853 0.853008 1256 Karp_00936 yes yes 0 2 0 0 By MS/MS By MS/MS By matching 1 1 1 49.93 50.2 2 0.0034395 19212 20181213_JW_Orientia_Karp_1_1 133.98 61.655 12808000 5255600 0 6106100 0 0 0 0 1446400 2617 1256 2293 15912;15913;15914 10408;10409 10408 665;666;667;668 0 FNADEFEDMVAEK Oxidation (M) 1559.645 0.64498906 945 X5D7P1;F8W7C6;X1WI28;X5D2T3;P27635 RPL10 60S ribosomal protein L10 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 51.127 51.489 2 1.8529E-11 20042 20181213_JW_Orientia_Karp_1_1 202.05 32.232 29663000 10185000 8016000 8616600 0 0 0 2297800 547600 2618 945 2294 15915;15916;15917;15918;15919 10410;10411;10412;10413 10410 535 4 FNAILVEYK Unmodified 1095.5964 0.59644637 1105 Karp_00283 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.4 54.716 2 0.0002471 21914 20181213_JW_Orientia_Karp_1_2 168.26 86.018 573380000 122060000 145550000 144020000 31673000 56444000 67061000 0 6578200 2619 1105 2295 15920;15921;15922;15923;15924;15925;15926 10414;10415;10416;10417;10418;10419;10420 10415 7 FNAILVEYK Deamidation (NQ) 1096.5805 0.58046195 1105 Karp_00283 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.797 58.098 2 0.0028406 23850 20181213_JW_Orientia_Karp_1_3 123.86 76.011 77102000 20258000 12130000 21658000 3325800 6973000 9558600 0 3198200 2620 1105 2295 15927;15928;15929;15930;15931;15932;15933 10421;10422;10423;10424;10425;10426;10427 10423 458 7 FNALFAQGNYSEAAK Unmodified 1629.7787 0.77872084 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By matching By MS/MS 1 1 52.246 52.746 2 0.022719 18381 20181213_JW_Orientia_Karp_3_1 82.85 49.762 16259000 0 13271000 0 0 0 0 2988300 0 2621 1757 2296 15934;15935 10428 10428 1 FNAMLKVFENQANMLER 2 Oxidation (M);Deamidation (NQ) 2086.9816 0.9815961 1946 Q96LK5;Q96M83 CCDC7 Coiled-coil domain-containing protein 7 yes no 0 1 2 1 By MS/MS 1 34.291 34.943 3 0.038156 9924 20181213_JW_Orientia_Karp_3_1 44.807 16.51 868670 0 0 0 0 0 0 868670 0 2622 1946 2297 15936 10429 10429 2065 0 FNAVTNAGAQTR Unmodified 1248.6211 0.62109799 1289 Karp_01161 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 31.588 31.862 2 2.2323E-17 8743 20181213_JW_Orientia_Karp_1_3 247.3 168.79 41249000 12660000 12849000 12566000 3173900 0 0 0 0 2623 1289 2298 15937;15938;15939;15940 10430;10431;10432 10432 3 FNAVTNAGAQTR Deamidation (NQ) 1249.6051 0.60511357 1289 Karp_01161 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.654 35.014 2 0.0012963 10294 20181213_JW_Orientia_Karp_1_2 142.97 71.276 14968000 5786700 4682500 0 1400700 1330000 0 1767700 0 2624 1289 2298 15941;15942;15943;15944;15945;15946;15947 10433;10434;10435;10436;10437;10438;10439;10440;10441;10442 10435 706;707 10 FNCEINQVPTTVLIEK Unmodified 1903.9713 0.97134899 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 2 1 1 2 60.793 61.091 2;3 1.2637E-19 26374 20181213_JW_Orientia_Karp_1_1 252.2 164.41 187650000 68830000 25181000 47572000 9171400 10948000 6051200 1355300 18540000 2625 1178 2299 15948;15949;15950;15951;15952;15953;15954;15955;15956;15957;15958;15959;15960 10443;10444;10445;10446;10447 10443 5 FNDDTIFK Unmodified 998.47091 0.4709115 1369 Karp_01981 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.215 48.464 2 0.0042969 17498 20181213_JW_Orientia_Karp_1_3 133.23 55.503 30885000 6758100 10695000 9912100 1495800 1203300 820580 0 0 2626 1369 2300 15961;15962;15963;15964;15965;15966;15967 10448;10449;10450;10451;10452;10453 10450 6 FNDEHIPDSPFVVPVASLSDDAR Unmodified 2526.2027 0.20268215 1797 Q14315-2;Q14315;Q59H94 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 68.861 68.972 3 0.030931 31137 20181213_JW_Orientia_Karp_1_1 66.467 36.575 21918000 8151900 6232600 7533600 0 0 0 0 0 2627 1797 2301 15968;15969;15970 10454 10454 1 FNDEHIPESPYLVPVIAPSDDAR Unmodified 2580.2496 0.24963234 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 65.853 66.055 3 0.016435 23073 20181213_JW_Orientia_Karp_3_1 81.884 51.201 331320000 103300000 120100000 44587000 0 15908000 7535700 24562000 15324000 2628 1520 2302 15971;15972;15973;15974;15975;15976;15977 10455;10456;10457;10458;10459 10458 5 FNDEHIPESPYLVPVIAPSDDAR Deamidation (NQ) 2581.2336 0.23364793 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 1 0 0 By MS/MS 1 71.356 71.505 3 0.025368 32654 20181213_JW_Orientia_Karp_1_2 63.376 29.159 10873000 0 10873000 0 0 0 0 0 0 2629 1520 2302 15978 10460 10460 1021 1 FNEEHIPDSPFVVPVASPSGDAR Unmodified 2466.1816 0.18155278 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91;H0Y5C6 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 61.82 62.063 3 0.0030702 26801 20181213_JW_Orientia_Karp_1_2 80.41 41.037 355650000 87314000 118480000 90734000 0 24972000 16689000 0 17462000 2630 1615 2303 15979;15980;15981;15982;15983;15984 10461;10462;10463;10464;10465 10462 5 FNEQELNHMVK Oxidation (M) 1403.6503 0.65034921 1319 Karp_01281 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 30.466 30.885 3 0.001696 8781 20181213_JW_Orientia_Karp_1_1 117.14 65.157 407530000 162290000 41819000 49560000 26918000 26539000 56723000 25582000 18104000 2631 1319 2304 15985;15986;15987;15988;15989;15990;15991;15992;15993 10466;10467;10468;10469;10470;10471 10466 880 5 FNEQELNHMVK Unmodified 1387.6554 0.65543458 1319 Karp_01281 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 39.157 39.428 3 0.020952 11614 20181213_JW_Orientia_Karp_2_2 67.08 39.931 289400000 100380000 73142000 90522000 0 8154500 0 17198000 0 2632 1319 2304 15994;15995;15996;15997;15998 10472;10473 10473 2 FNEQELNHMVK Oxidation (M);Deamidation (NQ) 1404.6344 0.63436479 1319 Karp_01281 yes yes 0 1 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 31.029 31.423 3 0.026614 8554 20181213_JW_Orientia_Karp_1_3 69.451 12.721 27048000 5706700 0 10965000 4522900 816000 0 3933000 1104700 2633 1319 2304 15999;16000;16001;16002;16003;16004 10474 10474 756 880 1 FNESNMEDVTAVEANLTDVK Unmodified 2225.0158 0.015792583 1162 Karp_00605 yes yes 0 0 0 0 By matching By MS/MS 1 1 64.014 64.188 2 0.00029081 27626 20181213_JW_Orientia_Karp_1_3 118.5 87.774 10145000 0 3659100 6486000 0 0 0 0 0 2634 1162 2305 16005;16006 10475 10475 1 FNETVDIAIK Unmodified 1148.6077 0.60773933 1173 Karp_00627 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 51.459 51.769 2 1.1672E-06 19841 20181213_JW_Orientia_Karp_1_3 185.6 107.33 127840000 33449000 33548000 23972000 24037000 11404000 0 0 1433700 2635 1173 2306 16007;16008;16009;16010;16011;16012;16013 10476;10477;10478;10479;10480 10478 5 FNFPVFK Unmodified 897.47487 0.47487467 1141 Karp_00453 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 60.989 61.231 2 0.011787 22476 20181213_JW_Orientia_Karp_3_2 122.15 57.591 25871000 10484000 0 4517700 0 1471000 3117600 0 6281000 2636 1141 2307 16014;16015;16016;16017;16018 10481 10481 1 FNFSGSK Unmodified 785.3708 0.37080353 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 32.673 33.157 2 0.027706 9215 20181213_JW_Orientia_Karp_3_1 92.47 29.753 3490100 0 0 0 154620 0 977840 2357700 0 2637 1782 2308 16019;16020;16021 10482 10482 1 FNGSHVVGSPFK Deamidation (NQ) 1275.6248 0.62478638 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 44.786 45.024 3 0.03274 15540 20181213_JW_Orientia_Karp_1_3 80.318 24.06 98731000 0 39937000 54349000 0 1684600 2760400 0 0 2638 1520 2309 16022;16023;16024;16025 10483;10484 10484 2 FNITISDTVYK Unmodified 1299.6711 0.67106787 1384 Karp_02123 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.984 57.329 2 0.00051157 21752 20181213_JW_Orientia_Karp_2_3 140.78 31.065 60614000 11270000 12594000 11232000 5084500 7083500 7685300 611900 5052800 2639 1384 2310 16026;16027;16028;16029;16030;16031;16032;16033 10485;10486;10487;10488;10489;10490;10491;10492;10493 10491 9 FNIVIPIATDTK Unmodified 1330.7497 0.74965254 1141 Karp_00453 yes yes 0 0 0 0 By MS/MS 1 68.005 68.204 2 0.017276 30101 20181213_JW_Orientia_Karp_1_3 87.568 40.37 12200000 0 0 12200000 0 0 0 0 0 2640 1141 2311 16034 10494 10494 1 FNLNQYVNR Unmodified 1166.5833 0.58325592 1299 Karp_01192 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 48.709 49.01 2 2.9108E-14 18488 20181213_JW_Orientia_Karp_1_1 234.63 149.37 134790000 30846000 30571000 21373000 18510000 7391400 9913400 0 16185000 2641 1299 2312 16035;16036;16037;16038;16039;16040;16041 10495;10496;10497;10498;10499;10500 10495 6 FNLTGLNEQVPHYR Unmodified 1686.8478 0.84780346 1486 N0E466;N0E4C7;Q5SRQ3;Q5SRQ6;N0E472;P67870;N0E650;N0E638;N0E6J1;B4DUJ4;N0E644 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-1072;CSNK2B-LY6G5B-560;CSNK2B-LY6G5B-562 Casein kinase II subunit beta yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 51.05 51.311 3 0.0024612 19654 20181213_JW_Orientia_Karp_1_2 103.46 42.424 49020000 11176000 14924000 0 8676700 6621900 7620800 0 0 2642 1486 2313 16042;16043;16044;16045;16046 10501;10502 10502 2 FNMANALASATCER Oxidation (M) 1570.6868 0.68681107 1680 P48059-3;P0CW20;P0CW19;P0CW19-2 LIMS1;LIMS3L;LIMS3 LIM and senescent cell antigen-like-containing domain protein 1;LIM and senescent cell antigen-like-containing domain protein 3-like;LIM and senescent cell antigen-like-containing domain protein 3 yes no 0 0 1 0 By MS/MS By MS/MS 1 1 41.56 42.141 2 0.0066507 13418 20181213_JW_Orientia_Karp_3_1 101.38 73.716 2986600 0 0 0 0 0 0 2301600 684970 2643 1680 2314 16047;16048 10503;10504 10503 1298 2 FNNGEPQNPLSIVGEAPNK Deamidation (NQ) 2024.9803 0.98033378 1262 Karp_01022 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 61.692 61.987 2 0.00013945 27028 20181213_JW_Orientia_Karp_1_2 137.39 81.099 98957000 21886000 20853000 44282000 2154600 6942400 0 0 2839200 2644 1262 2315 16049;16050;16051;16052;16053;16054;16055;16056;16057;16058;16059 10505;10506;10507;10508;10509;10510;10511;10512 10507 670;671 8 FNNNALNVLTN Deamidation (NQ) 1233.599 0.59896556 1405 Karp_02216 yes yes 0 1 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 68.783 68.982 2 0.022814 27051 20181213_JW_Orientia_Karp_3_2 70.412 19.607 45773000 10397000 6026200 7977200 3668600 8920300 0 6386200 2397800 2645 1405 2316 16060;16061;16062;16063;16064;16065;16066 10513 10513 921 0 FNNNISK Unmodified 835.41882 0.41881635 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS 1 22.993 22.993 2 0.029889 5217 20181213_JW_Orientia_Karp_1_1 102.77 28.799 0 0 0 0 0 0 0 0 0 2646 1358 2317 16067 10514 10514 1 FNPFDYNQDLSLNK Unmodified 1713.7999 0.79985021 1434 Karp_02392 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 65.966 66.153 2 0.0077796 29416 20181213_JW_Orientia_Karp_1_1 101.72 73.011 18862000 6609400 5962400 0 1418400 4871900 0 0 0 2647 1434 2318 16068;16069;16070;16071 10515 10515 1 FNPFVTSDR Unmodified 1081.5193 0.51925868 1039 J3KTJ8;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KSS0;E5RIT6;A0A024RBF6;Q9UNX3;E5RHH1 RPL26;RPL26L1;hCG_26523 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 49.37 49.652 2 0.00078254 18965 20181213_JW_Orientia_Karp_1_1 145.9 71.649 945650000 172430000 214820000 148780000 193720000 88176000 112580000 0 15145000 2648 1039 2319 16072;16073;16074;16075;16076;16077;16078;16079 10516;10517;10518;10519;10520;10521;10522 10516 7 FNQAQSGNIQSTVMLDK Unmodified 1879.9098 0.90981137 1669 P42224;J3KPM9;P42224-2;E7EPD2;D2KFR9;E7ENM1;A5D905 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 48.5 48.682 2 0.00087076 17897 20181213_JW_Orientia_Karp_1_2 141.54 88.088 29873000 10867000 9790600 9215200 0 0 0 0 0 2649 1669 2320 16080;16081;16082 10523 10523 1 FNQDLEYLDLSHNQLQK 3 Deamidation (NQ) 2106.9746 0.9745797 476 D6RAV7;D1CSA0;D1CS99;D1CS98;D1CS97;D1CS96;D1CS93;D1CS92;D1CS91;B6RFS7;B6CH45;B6CH44;B6CH42;B6CH37;B2R933;Q2NKL3;Q9Y2C9 TLR6 Toll-like receptor;Toll-like receptor 6 yes no 0 3 0 0 By matching By MS/MS By matching By matching 1 1 1 1 79.027 79.013 2 0.040828 37076 20181213_JW_Orientia_Karp_1_3 96.067 48.638 235200000 0 54720000 66751000 52132000 61597000 0 0 0 2650 476 2321 16083;16084;16085;16086 10524 10524 1465;1466;1467 1 FNQMGFR Oxidation (M) 914.40687 0.40687146 1097 Karp_00260 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 31.022 31.422 2 0.042974 8101 20181213_JW_Orientia_Karp_2_3 76.847 33.723 21652000 0 9931200 7259400 2595400 0 819460 1046500 0 2651 1097 2322 16087;16088;16089;16090;16091 10525 10525 1 FNVPVSLESK Unmodified 1118.5972 0.59717465 977 H0YHG0;P82979;Q567R9;F8VZQ9 SARNP;CIP29 SAP domain-containing ribonucleoprotein yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 53.168 53.398 2 0.0061195 19556 20181213_JW_Orientia_Karp_2_3 100.48 52.194 70498000 7060600 0 6413300 18528000 12131000 26365000 0 0 2652 977 2323 16092;16093;16094;16095;16096 10526;10527;10528 10528 3 FNVTGTPEQYVPYSTTR Unmodified 1958.9374 0.93740633 1830 Q53HG1;Q9UI09 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 56.424 56.607 2 8.1836E-09 23549 20181213_JW_Orientia_Karp_1_1 173.25 115.91 29768000 10247000 12128000 7392800 0 0 0 0 0 2653 1830 2324 16097;16098;16099 10529;10530;10531 10529 3 FPAAQAPDPSETPK Unmodified 1454.7042 0.70415892 525 J3QSX6;Q5JVV3;B3KSG3;H0Y3K7;F8W8M4;Q5T6N4;O14639-4;O14639-3;O14639-5;Q5T6N2;O14639-2;B3KVH2;O14639 ABLIM1 Actin-binding LIM protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 42.415 42.715 2 0.0072824 14764 20181213_JW_Orientia_Karp_1_1 117.09 35.226 62865000 12391000 12189000 19501000 5555200 6190800 0 7037500 0 2654 525 2325 16100;16101;16102;16103;16104;16105 10532;10533 10532 1 FPDEDEILEK Unmodified 1233.5765 0.57649879 696 Q96I16;Q6IBR8;B5BU01;P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 52.7 52.97 2 0.0028587 20843 20181213_JW_Orientia_Karp_1_2 111.06 46.64 29324000 8347400 11840000 6118900 0 2146200 0 871130 0 2655 696 2326 16106;16107;16108;16109;16110 10534;10535;10536;10537 10535 4 FPEHELTFDPQR Unmodified 1514.7154 0.7153923 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z602;E9PJ21;Q05D91;Q6IN67;Q9Y4L1-2;A0A024R3G0;J3QL06;J3KTF1;Q9BST8;J3QQH7;J3QLE9;B7Z4E6 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 46.365 46.548 3 0.0056734 16638 20181213_JW_Orientia_Karp_1_2 111.5 74.65 28778000 8777200 7797200 12204000 0 0 0 0 0 2656 545 2327 16111;16112;16113 10538;10539 10538 2 FPEVIINFPDPAQK Unmodified 1613.8453 0.84534384 92 B2R5V9;A0A024R4E5;Q00341;H0Y394;Q00341-2;Q6ZS03;Q96CF6;H7BZC3;Q6ZN49 HDLBP Vigilin yes no 0 0 0 0 By MS/MS By matching 1 1 71.515 71.59 2 0.032744 32757 20181213_JW_Orientia_Karp_1_1 90.434 62.05 10571000 7978900 2592500 0 0 0 0 0 0 2657 92 2328 16114;16115 10540 10540 1 FPFELVK Unmodified 878.49019 0.49019038 1693 P50570-2;P50570-5;P50570;K7EMQ3;Q59G96;B4DJ53;Q59GI5;B4DHH5;B7ZAC0;B4DK06;Q05193-5;Q05193-3;Q05193-4;Q05193-2;Q05193;P50570-3;P50570-4 DNM2;DNM1 Dynamin-2;Dynamin-1 yes no 0 0 0 0 By MS/MS 1 59.658 59.856 2 0.031977 24977 20181213_JW_Orientia_Karp_1_3 97.602 0 0 0 0 0 0 0 0 0 0 2658 1693 2329 16116 10541 10541 1 FPFGIGGSLGAYVNR Unmodified 1553.7991 0.79906235 1372 Karp_02002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.021 69.193 2 2.1587E-28 31315 20181213_JW_Orientia_Karp_1_1 240 186.68 226950000 67596000 45173000 44260000 471700 21363000 0 32484000 15603000 2659 1372 2330 16117;16118;16119;16120;16121;16122;16123 10542;10543;10544;10545;10546;10547 10542 6 FPFLANSR Unmodified 950.4974 0.49740102 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 52.973 53.273 2 0.026233 21468 20181213_JW_Orientia_Karp_1_1 84.743 37.749 127120000 58592000 0 26500000 16769000 9781600 14948000 529440 0 2660 1066 2331 16124;16125;16126;16127;16128;16129 10548;10549;10550 10548 3 FPFLANSR Deamidation (NQ) 951.48142 0.48141661 1066 Karp_00014 yes yes 0 1 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 59.554 59.754 2 0.024167 22738 20181213_JW_Orientia_Karp_2_2 98.629 26.491 71322000 51823000 9834500 6973100 0 2691500 0 0 0 2661 1066 2331 16130;16131;16132;16133 10551;10552 10552 401 2 FPGQLNADLR Unmodified 1129.588 0.58800695 1566;1747;1550;1964;1823 P04350;B4DJ43;B4DE77;M0R2D3;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;Q3ZCM7;A0A075B736;Q5SQY0;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB8;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 1 1 49.047 49.354 2 0.0001798 18152 20181213_JW_Orientia_Karp_1_2 145.9 60.743 354250000 98503000 85025000 87707000 26476000 9739500 13895000 126520 32777000 2662 1550;1566;1747;1823;1964 2332 16134;16135;16136;16137;16138;16139;16140;16141;16142 10553;10554;10555;10556;10557;10558;10559;10560 10555 8 FPILSANIK Unmodified 1001.591 0.59096706 487 Q6NZX3;Q53Z63;B2RBH2;P21589-2;P21589;Q96B60 NT5E 5'-nucleotidase yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 55.079 55.405 2 0.0010835 22377 20181213_JW_Orientia_Karp_1_2 130.56 50.333 128970000 31536000 25825000 50377000 3355800 0 17517000 0 356220 2663 487 2333 16143;16144;16145;16146;16147;16148 10561 10561 1 FPIVTLTEIFR Unmodified 1334.7598 0.7598233 1388 Karp_02136 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 74.615 74.649 2 0.012771 34701 20181213_JW_Orientia_Karp_1_1 91.265 58.945 16645000 9548900 5783900 0 0 1312000 0 0 0 2664 1388 2334 16149;16150;16151 10562 10562 1 FPIYMDYQATTPIDTR Oxidation (M) 1946.9084 0.90841439 1276 Karp_01108 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 1 1 60.248 60.544 2;3 1.0534E-19 25353 20181213_JW_Orientia_Karp_1_3 214.61 168.02 251660000 77330000 47972000 61029000 18259000 5887300 6212600 34475000 491660 2665 1276 2335 16152;16153;16154;16155;16156;16157;16158;16159;16160;16161;16162;16163 10563;10564;10565;10566;10567;10568;10569 10564 840 7 FPIYMDYQATTPIDTR Unmodified 1930.9135 0.91349976 1276 Karp_01108 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 66.314 66.504 2 1.4786E-62 29264 20181213_JW_Orientia_Karp_1_2 273.74 224.74 115480000 56078000 20160000 32182000 0 5538500 0 1520700 0 2666 1276 2335 16164;16165;16166;16167;16168;16169 10570;10571;10572;10573;10574 10571 5 FPIYSSALK Unmodified 1024.5593 0.55933258 1350 Karp_01526 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.293 50.543 2 0.0030099 19569 20181213_JW_Orientia_Karp_1_1 113.71 63.682 272970000 60333000 48766000 46486000 64778000 24401000 28204000 0 0 2667 1350 2336 16170;16171;16172;16173;16174;16175 10575;10576;10577 10575 3 FPIYYGTLK Unmodified 1100.5906 0.59063271 1185 Karp_00684 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 55.597 55.913 2 0.00078977 20911 20181213_JW_Orientia_Karp_2_3 126.28 69.844 110660000 22825000 32940000 26737000 6566300 10342000 10845000 0 400170 2668 1185 2337 16176;16177;16178;16179;16180;16181;16182 10578;10579;10580;10581;10582 10582 5 FPKAEFVEVTK Unmodified 1293.6969 0.69688869 792 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 1 1 44.299 44.374 3 0.035778 14258 20181213_JW_Orientia_Karp_2_2 78.324 32.671 0 0 0 0 0 0 0 0 0 + 2669 792 2338 16183;16184 10583;10584 10584 2 FPLDYYSIPFPTPTTPLTGR Unmodified 2282.1623 0.16232089 666 B4DZJ6;F8W726;B4DYY5;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;H0Y5H6;H7C2T8 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 75.537 75.557 2 0.025405 35301 20181213_JW_Orientia_Karp_1_1 71.031 42.398 34431000 12251000 7838900 0 2708400 0 2692700 8940200 0 2670 666 2339 16185;16186;16187;16188;16189 10585 10585 1 FPLEDIK Unmodified 860.46437 0.46436956 1102 Karp_00272 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 49.896 50.248 2 0.030664 17596 20181213_JW_Orientia_Karp_2_1 88.643 17.265 12427000 4561100 0 0 5401700 0 2335800 0 128720 2671 1102 2340 16190;16191;16192;16193 10586 10586 1 FPLTTESAMK Oxidation (M) 1139.5533 0.55326092 412 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 RPL23A 60S ribosomal protein L23a yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 40.051 40.358 2 0.00075223 12108 20181213_JW_Orientia_Karp_3_2 126.24 72.688 421770000 81675000 110640000 83967000 41996000 24993000 0 63098000 15399000 2672 412 2341 16194;16195;16196;16197;16198;16199;16200;16201 10587;10588;10589;10590;10591;10592;10593;10594 10594 281 8 FPLTTESAMK Unmodified 1123.5583 0.5583463 412 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 RPL23A 60S ribosomal protein L23a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 46.232 46.505 2 0.00022947 16279 20181213_JW_Orientia_Karp_1_3 144.12 90.154 269870000 80242000 65331000 80347000 9681100 5466900 9272200 0 19530000 2673 412 2341 16202;16203;16204;16205;16206;16207;16208 10595;10596;10597;10598;10599;10600;10601 10597 7 FPNSTWSK Unmodified 965.46068 0.46068117 1273 Karp_01100 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 37.95 38.25 2 0.013215 11498 20181213_JW_Orientia_Karp_3_1 98.629 11.797 58632000 18536000 11113000 20834000 0 0 0 8148300 0 2674 1273 2342 16209;16210;16211;16212 10602;10603 10603 2 FPQMSSYQRMLVHR 2 Oxidation (M);2 Deamidation (NQ) 1812.8287 0.82872428 1000 H7C0P9;H7C1B6;H7C2X8;Q9UBL0-4;Q9UBL0;Q9UBL0-3 ARPP21 cAMP-regulated phosphoprotein 21 yes no 0 2 2 1 By MS/MS 1 74.197 74.194 2 0.03681 34128 20181213_JW_Orientia_Karp_1_3 46.73 14.887 10869000 0 0 10869000 0 0 0 0 0 2675 1000 2343 16213 10604 10604 1754;1755 0 FQAILPLR Unmodified 956.58074 0.58073672 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 58.399 58.649 2 0.0043598 22123 20181213_JW_Orientia_Karp_2_2 132.29 64.293 156120000 61081000 23812000 24803000 971460 13250000 32199000 0 0 2676 1262 2344 16214;16215;16216;16217;16218;16219 10605;10606;10607;10608;10609 10608 5 FQDGDLTLYQSNTILR Unmodified 1882.9425 0.94249171 1574 V9HWE9;P09211;A8MX94 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 63.193 63.475 2 0 27484 20181213_JW_Orientia_Karp_1_2 474.27 350.65 249800000 99010000 38569000 60917000 2959100 22793000 21360000 112450 4076100 2677 1574 2345 16220;16221;16222;16223;16224;16225;16226;16227 10610;10611;10612;10613;10614;10615 10612 6 FQDGDLTLYQSNTILR Deamidation (NQ) 1883.9265 0.92650729 1574 V9HWE9;P09211;A8MX94 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 1 0 0 By MS/MS By matching 1 1 66.168 66.293 2 0.0043735 29465 20181213_JW_Orientia_Karp_1_1 115.1 73.56 10706000 9589200 0 0 1117100 0 0 0 0 2678 1574 2345 16228;16229 10616 10616 1058;1924 1 FQDGDLTLYQSNTILR 2 Deamidation (NQ) 1884.9105 0.91052288 1574 V9HWE9;P09211;A8MX94 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 2 0 0 By MS/MS 1 66.208 66.306 2 1.9521E-05 28912 20181213_JW_Orientia_Karp_1_3 180.11 127.41 0 0 0 0 0 0 0 0 0 2679 1574 2345 16230 10617 10617 1058;1924 1 FQDGVLEPDFPR Unmodified 1418.683 0.68302954 815 CON__Q3ZBS7 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 59.091 59.412 2 6.805E-05 24935 20181213_JW_Orientia_Karp_1_2 164.48 93.576 32283000 6123800 9039200 5130100 2796700 2896500 4603300 150350 1543200 + 2680 815 2346 16231;16232;16233;16234;16235;16236;16237;16238 10618;10619 10619 2 FQDLGAAYEVLSDSEK Unmodified 1770.8312 0.83120992 1997 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 63.668 63.9 2 1.3759E-05 27796 20181213_JW_Orientia_Karp_1_2 171.15 115.84 76276000 27782000 3195300 19266000 3016800 13157000 6337100 114850 3407000 2681 1997 2347 16239;16240;16241;16242;16243;16244;16245;16246;16247 10620;10621;10622;10623;10624;10625;10626 10621 7 FQDLVDAVR Unmodified 1061.5506 0.55055881 186 A0A024R9Q1;P07996;A0PJG0;CON__Q28194;A8MZG1 THBS1 Thrombospondin-1 yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 51.537 51.911 2 0.0033055 17999 20181213_JW_Orientia_Karp_3_1 112.3 43.913 353420000 99831000 78824000 76508000 40252000 14135000 25069000 14813000 3986600 + 2682 186 2348 16248;16249;16250;16251;16252;16253;16254;16255;16256 10627;10628 10627 2 FQDNYLEVEYDLSK Unmodified 1761.8097 0.8097462 1190 Karp_00705 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 62.794 63.058 2 0.0043974 26878 20181213_JW_Orientia_Karp_1_3 138.89 89.913 86679000 33277000 15645000 25232000 1233300 6000800 5210000 80658 0 2683 1190 2349 16257;16258;16259;16260;16261;16262;16263 10629 10629 1 FQDVGPQAPVGSVYQK Unmodified 1718.8628 0.86278482 657 B4DXL9;Q9UJU6;Q9UJU6-2;Q9UJU6-3;B4DNX5;B4DUF9;Q59FH4;H0Y5J4;B4DDU5;B4DKZ4;B4DDD6;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.941 49.287 2 2.5653E-09 17162 20181213_JW_Orientia_Karp_2_1 190.34 123.77 93544000 18529000 22143000 14778000 16976000 7935700 8796600 204260 4181000 2684 657 2350 16264;16265;16266;16267;16268;16269;16270;16271 10630;10631;10632;10633;10634;10635;10636 10633 7 FQELIFEDFAR Unmodified 1413.6929 0.69286595 158 A0A024R872;Q96TA1-2;Q96TA1;Q2YD88;Q9H8K1 C9orf88;FAM129B Niban-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 69.975 70.057 2 0.010192 31870 20181213_JW_Orientia_Karp_1_1 96.64 33.357 7844100 4162000 0 3132700 549420 0 0 0 0 2685 158 2351 16272;16273;16274 10637;10638 10637 2 FQEYHIQQNEALAAK Unmodified 1788.8795 0.87949752 126 A0A024R648;Q9Y5J7 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 39.774 40.176 3 0.0093797 12021 20181213_JW_Orientia_Karp_3_2 117.2 74.173 141030000 0 0 0 64489000 16763000 14381000 38759000 6641800 2686 126 2352 16275;16276;16277;16278;16279 10639;10640;10641;10642;10643;10644 10644 6 FQGVIAELK Unmodified 1003.5702 0.57023162 835 D3DSM4;D3DSM5;P39060-2;P39060-1;P39060 COL18A1 Collagen alpha-1(XVIII) chain;Endostatin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.404 50.704 2 0.0012434 19259 20181213_JW_Orientia_Karp_1_2 128.28 35.118 68769000 0 22081000 16799000 15284000 6153700 8451700 0 0 2687 835 2353 16280;16281;16282;16283;16284;16285 10645;10646;10647 10646 3 FQHPGSDMR Unmodified 1073.4713 0.47126263 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 2 2 2 2 23.666 24.046 2;3 0.0088806 5696 20181213_JW_Orientia_Karp_1_1 94.309 50.867 121090000 0 54180000 23507000 8484700 5177500 5198000 16569000 7976800 2688 345 2354 16286;16287;16288;16289;16290;16291;16292;16293;16294;16295;16296;16297;16298;16299;16300 10648;10649;10650;10651;10652;10653 10648 6 FQHPGSDMR Oxidation (M) 1089.4662 0.46617725 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1 1 1 18.342 18.699 2 0.024517 3040 20181213_JW_Orientia_Karp_3_2 78.334 30.486 125430000 22924000 35900000 19041000 6183000 1117200 30985000 8307100 967950 2689 345 2354 16301;16302;16303;16304;16305;16306;16307;16308;16309 10654;10655;10656;10657 10657 231 4 FQLAVEALEQEK Unmodified 1403.7296 0.72964538 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 58.914 59.124 2 0.013398 24438 20181213_JW_Orientia_Karp_1_3 108.72 37.563 68879000 18514000 24007000 17672000 0 4378000 4307600 0 0 2690 839 2355 16310;16311;16312;16313;16314 10658 10658 1 FQMAYSNLLR Unmodified 1241.6227 0.62267789 1661 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 57.914 58.181 2 0.0039905 23904 20181213_JW_Orientia_Karp_1_3 105.4 53.609 20370000 0 6895600 10323000 0 3151400 0 0 0 2691 1661 2356 16315;16316;16317;16318 10659;10660;10661;10662;10663 10662 5 FQMAYSNLLR Oxidation (M) 1257.6176 0.61759251 1661 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.01 49.327 2 0.0025895 18267 20181213_JW_Orientia_Karp_1_2 109.79 56.623 47271000 10103000 10432000 11661000 9774300 5249100 0 51960 0 2692 1661 2356 16319;16320;16321;16322;16323;16324 10664 10664 1283 1 FQMIPLDPK Unmodified 1087.5736 0.57360243 186 A0A024R9Q1;P07996;P07996-2;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 59.115 59.365 2 0.0021337 24950 20181213_JW_Orientia_Karp_1_2 117.89 48.065 111860000 26877000 24293000 44895000 3798000 4949100 7050800 0 0 + 2693 186 2357 16325;16326;16327;16328;16329;16330 10665;10666;10667;10668 10667 4 FQMIPLDPK Oxidation (M) 1103.5685 0.56851706 186 A0A024R9Q1;P07996;P07996-2;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 48.824 49.193 2 0.0080655 16213 20181213_JW_Orientia_Karp_3_2 94.692 28.07 104110000 0 37838000 26524000 0 6379000 16003000 49088 17320000 + 2694 186 2357 16331;16332;16333;16334;16335;16336 10669;10670;10671;10672 10672 143 4 FQMPDQGMTSADDFFQGTK Oxidation (M) 2165.9034 0.90340536 1814 Q53ET2;Q59GB4;Q16555-2;Q16555;Q86U75;E5RFU4 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 1 0 By MS/MS 1 59.086 59.436 2 0.0028467 24943 20181213_JW_Orientia_Karp_1_2 133.86 97.542 0 0 0 0 0 0 0 0 0 2695 1814 2358 16337 10673 10673 1452 1 FQPGETLTEILETPATSEQEAEHQR Unmodified 2840.3464 0.34644586 235 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 64.114 64.349 3 0.027049 27654 20181213_JW_Orientia_Karp_1_3 75.539 47.611 139620000 0 76524000 31423000 2083500 19906000 5393600 0 4292300 2696 235 2359 16338;16339;16340;16341;16342;16343 10674 10674 1 FQQAQEELAEMK Oxidation (M) 1466.6711 0.67114423 609 B4DNL3;Q9P0K7-4;Q9P0K7-3;Q9P0K7;Q9P0K7-2;B3KMZ9 RAI14 Ankycorbin yes no 0 0 1 0 By MS/MS 1 35.756 36.106 2 0.0023666 10856 20181213_JW_Orientia_Karp_1_2 139.15 62.931 0 0 0 0 0 0 0 0 0 2697 609 2360 16344 10675 10675 378 1 FQQTEIQQMQNMLQDIENNR Deamidation (NQ) 2508.1373 0.13732148 2035 yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 76.731 76.724 2 0.013741 35673 20181213_JW_Orientia_Karp_1_3 91.093 25.285 1056600000 187070000 153890000 287750000 0 155610000 100170000 172060000 0 + 2698 2035 2361 16345;16346;16347;16348;16349;16350;16351;16352 10676;10677 10677 1243;1244 2 FQQTTNADNFIADAK Unmodified 1682.79 0.79001381 1116 Karp_00304 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.6 47.945 2 3.3413E-62 17671 20181213_JW_Orientia_Karp_1_1 273.08 171.02 165440000 34464000 36791000 35691000 12243000 12547000 13199000 3730300 16776000 2699 1116 2362 16353;16354;16355;16356;16357;16358;16359;16360 10678;10679;10680;10681;10682;10683;10684 10678 7 FQRPGDPQSAQDK Unmodified 1472.7008 0.70080487 107 A0A024R588;A0A024R566;B4DJU4;A0A024R5D9;A0A024R572;Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;B4DSE4;Q15637-7;Q15637-5;B4DX42;H7C561 SF1 Splicing factor 1 yes no 0 0 0 1 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 24.647 25.049 3 0.031728 4771 20181213_JW_Orientia_Karp_3_2 109.6 67.775 20039000 0 9462400 0 4394900 2799100 1488900 0 1893300 2700 107 2363 16361;16362;16363;16364;16365 10685;10686 10686 2 FQSSAVMALQEACEAYLVGLFEDTNLCAIHAK Oxidation (M) 3601.6891 0.68912584 1749 P68431 HIST1H3A Histone H3.1 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 75.292 75.317 3 1.4848E-07 35231 20181213_JW_Orientia_Karp_1_2 111.93 96.152 64836000 17905000 17289000 19857000 0 0 0 9784400 0 2701 1749 2364 16366;16367;16368;16369 10687;10688 10687 1373 2 FQSSHHPTDITSLDQYVER Unmodified 2259.0556 0.055623984 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71;B4DHT9 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 45.988 46.26 3 2.2179E-07 14585 20181213_JW_Orientia_Karp_3_2 154.56 111.03 302720000 81514000 70647000 113000000 8664900 4772900 8521700 0 15598000 2702 1598 2365 16370;16371;16372;16373;16374;16375;16376 10689;10690 10690 2 FQTMSDQIIGR Oxidation (M) 1310.6289 0.62888548 1525 O75506 HSBP1 Heat shock factor-binding protein 1 yes yes 0 0 1 0 By matching By MS/MS By MS/MS 1 1 1 41.662 41.945 2 0.0082424 13362 20181213_JW_Orientia_Karp_3_1 96.113 51.978 23183000 9308700 0 8127200 0 0 0 5747500 0 2703 1525 2366 16377;16378;16379 10691;10692 10692 1138 2 FRHSIPDEVASK Unmodified 1384.7099 0.709913 1246 Karp_00917 yes yes 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 27.415 27.715 3 0.0056791 6415 20181213_JW_Orientia_Karp_3_1 119.21 69.581 351020000 225760000 67425000 812940 0 0 0 57023000 0 2704 1246 2367 16380;16381;16382;16383 10693 10693 1 FRQDLYYR Unmodified 1159.5774 0.57744226 1358 Karp_01807 yes yes 0 0 0 1 By matching By matching By MS/MS 1 1 1 34.828 35.112 3 0.030324 10047 20181213_JW_Orientia_Karp_3_1 76.827 30.669 12922000 7761600 0 4156700 0 0 0 1003900 0 2705 1358 2368 16384;16385;16386 10694 10694 1 FSALQQAVPTESTDNRR Unmodified 1918.9497 0.94970235 877 E7EUU4;Q04637-3;E7EX73;B4DSI9;E9PGM1;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637;Q04637-8;Q04637-9;Q96I65;H7C044 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 40.906 41.22 3 0.0087139 13492 20181213_JW_Orientia_Karp_1_3 84.759 49.233 48663000 11258000 14381000 14334000 1288300 0 0 7401500 0 2706 877 2369 16387;16388;16389;16390;16391;16392;16393 10695;10696;10697 10697 3 FSCMCPQGYQVVR Oxidation (M) 1646.7004 0.70035264 407 B4DWH0;Q53TA7;B3KS53;Q59G97;B2R6M6;A8KAJ3;Q12805-5;Q12805-2;Q12805-4;Q12805-3;Q12805 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1 yes no 0 0 1 0 By MS/MS 1 42.037 42.688 2 0.0035567 13649 20181213_JW_Orientia_Karp_3_1 113.44 78.672 7946400 0 0 0 0 0 0 7946400 0 2707 407 2370 16394 10698 10698 280 1 FSDGMLCIK Oxidation (M) 1085.4886 0.48855218 1077 Karp_00059 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 1 43.496 43.814 2 0.00015472 14420 20181213_JW_Orientia_Karp_2_3 183.74 111.86 440060000 75342000 109990000 58561000 46067000 8431200 40182000 101010000 481270 2708 1077 2371 16395;16396;16397;16398;16399;16400;16401;16402;16403;16404;16405;16406;16407;16408 10699;10700;10701;10702;10703;10704;10705;10706;10707;10708 10706 597 10 FSDGMLCIK Unmodified 1069.4936 0.49363755 1077 Karp_00059 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 51.074 51.376 2 0.00024545 19672 20181213_JW_Orientia_Karp_1_2 172.15 105.72 228500000 54347000 41607000 51356000 39288000 20195000 21296000 0 408080 2709 1077 2371 16409;16410;16411;16412;16413;16414;16415;16416 10709;10710;10711;10712;10713;10714;10715;10716 10710 8 FSDQFPLPLK Unmodified 1190.6336 0.63356015 202 A0A024RAM0;Q92973-3;Q92973-2;Q92973;S4R398 TNPO1 Transportin-1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 63.608 63.827 2 0.0025289 27449 20181213_JW_Orientia_Karp_1_3 112.71 68.334 5665700 0 0 4274300 0 0 866960 0 524410 2710 202 2372 16417;16418;16419 10717 10717 1 FSEEACAVLTSPTFEACHR Unmodified 2210.9725 0.97248798 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 52.7 53.044 3 0.00016539 20636 20181213_JW_Orientia_Karp_1_2 118.5 83.414 77666000 14823000 38433000 17084000 0 0 4501700 2696300 128460 2711 1466;1549 2373 16420;16421;16422;16423;16424;16425 10718 10718 1 FSELWIVEK Unmodified 1149.607 0.60701105 1534 O95786-2;O95786;B3KWW1;Q3B797 DDX58 Probable ATP-dependent RNA helicase DDX58 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 61.411 61.675 2 0.00035186 26071 20181213_JW_Orientia_Karp_1_3 161.79 90.288 9842000 2892800 2099300 3982500 0 0 0 0 867420 2712 1534 2374 16426;16427;16428;16429 10719;10720 10719 2 FSEYEVLVSR Unmodified 1227.6136 0.61355299 1127 Karp_00330 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 52.912 53.258 2 4.2131E-12 21317 20181213_JW_Orientia_Karp_1_1 214.05 157.42 276830000 63400000 57400000 83775000 26477000 14826000 25239000 5329300 387830 2713 1127 2375 16430;16431;16432;16433;16434;16435;16436;16437;16438 10721;10722;10723;10724;10725;10726;10727;10728 10721 8 FSGAFSFEAGVPYYHFK Unmodified 1952.9097 0.90973501 1455 Karp_02592 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 63.316 63.536 3 0.014536 27127 20181213_JW_Orientia_Karp_1_3 70.272 45.985 17749000 0 3635600 7896600 130340 4743700 1342500 0 0 2714 1455 2376 16439;16440;16441;16442;16443 10729;10730 10729 2 FSGAFSFEAGVPYYHFKPR Unmodified 2206.0636 0.063609895 1455 Karp_02592 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 56.974 57.364 4 0.00034198 21768 20181213_JW_Orientia_Karp_2_3 113.67 76.899 27785000 0 0 0 1572300 7435400 11490000 0 7287400 2715 1455 2377 16444;16445;16446;16447 10731;10732 10732 2 FSGWYDADLSPAGHEEAK Unmodified 1978.8697 0.86972069 1608 Q6P6D7;Q6FHU2;Q53G35;P18669;Q0D2Q6 PGAM1 Phosphoglycerate mutase;Phosphoglycerate mutase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.095 51.44 3 0.00021826 17610 20181213_JW_Orientia_Karp_3_1 174.4 139.31 464640000 160530000 76375000 83710000 35869000 38109000 42024000 26259000 1759800 2716 1608 2378 16448;16449;16450;16451;16452;16453;16454;16455 10733;10734;10735;10736;10737;10738;10739;10740 10739 8 FSHEEIAMATVTALR Oxidation (M) 1690.8349 0.83485551 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;A4UCS9;H3BU78;H3BR68 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 1 0 By MS/MS By matching By MS/MS 1 2 2 47.247 47.601 3 0.017693 15269 20181213_JW_Orientia_Karp_3_2 82.925 50.402 42032000 0 20593000 0 0 10158000 0 0 11281000 2717 1546 2379 16456;16457;16458;16459;16460 10741;10742 10742 1150 2 FSHEEIAMATVTALR Unmodified 1674.8399 0.83994089 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;A4UCS9;H3BU78;H3BR68 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 52.903 53.24 3 0.0042907 20987 20181213_JW_Orientia_Karp_1_2 94.551 51.246 68343000 0 29523000 21913000 5856100 0 11051000 0 0 2718 1546 2379 16461;16462;16463;16464;16465 10743;10744;10745;10746;10747 10743 5 FSIFAEAGYK Unmodified 1131.5601 0.56006086 1332 Karp_01370 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 57.322 57.623 2 0.00039835 23515 20181213_JW_Orientia_Karp_1_3 138.06 77.381 88669000 24820000 9495300 23508000 7829300 6599000 9866200 0 6551700 2719 1332 2380 16466;16467;16468;16469;16470;16471;16472 10748;10749;10750;10751 10748 4 FSIISVGK Unmodified 849.496 0.49600404 1222 Karp_00889 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 51.692 51.966 2 0.016435 20516 20181213_JW_Orientia_Karp_1_1 93.429 31.431 44167000 10085000 16669000 7196400 10217000 0 0 0 0 2720 1222 2381 16473;16474;16475;16476 10752 10752 1 FSITNQSQAQDIVK Unmodified 1577.8049 0.80493559 1109 Karp_00291 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.007 48.352 2 3.4028E-25 17699 20181213_JW_Orientia_Karp_1_2 231.66 143.52 82350000 12378000 27291000 21647000 7874100 4346300 3675500 1008800 4128700 2721 1109 2382 16477;16478;16479;16480;16481;16482;16483;16484 10753;10754;10755;10756;10757;10758;10759;10760 10754 8 FSLENNFLLQHNIR Unmodified 1743.9057 0.90565269 1669 P42224;J3KPM9;P42224-2;E7EPD2;D2KFR9;E7ENM1 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 57.585 57.895 3 0.018859 24480 20181213_JW_Orientia_Karp_1_1 67.118 26.027 61473000 29119000 7447900 16778000 1676100 0 4477500 0 1974200 2722 1669 2383 16485;16486;16487;16488;16489;16490 10761 10761 1 FSLLASPEPK Unmodified 1087.5914 0.59136099 1431 Karp_02388 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 52.835 53.01 2 0.0025044 21209 20181213_JW_Orientia_Karp_1_1 109.44 57.751 21633000 7079000 6386700 5859400 0 2307600 0 0 0 2723 1431 2384 16491;16492;16493;16494;16495 10762;10763;10764;10765 10762 4 FSMPGFK Oxidation (M) 828.38401 0.38401075 1782 Q09666;Q6ZQN2;B4DTV0;Q8N274;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 36.2 36.513 2 0.013666 11610 20181213_JW_Orientia_Karp_1_1 108.98 66.264 293830000 148560000 76219000 0 0 0 15851000 53194000 0 2724 1782 2385 16496;16497;16498;16499;16500 10766;10767;10768;10769 10766 1391 4 FSMPGFK Unmodified 812.3891 0.38909613 1782 Q09666;Q6ZQN2;B4DTV0;Q8N274;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.545 51.846 2 0.0094639 18461 20181213_JW_Orientia_Karp_2_1 148.21 80.712 577550000 177920000 73519000 184540000 71723000 9310900 60035000 0 494540 2725 1782 2385 16501;16502;16503;16504;16505;16506;16507 10770;10771;10772 10770 3 FSMPSLK Unmodified 808.41531 0.41531088 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 49.747 49.996 2 0.02652 18500 20181213_JW_Orientia_Karp_1_3 94.006 19.568 42053000 15648000 0 8571900 11477000 0 6355300 0 0 2726 1782 2386 16508;16509;16510;16511 10773;10774;10775 10774 3 FSMPSLK Oxidation (M) 824.41023 0.4102255 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 35.77 35.97 2 0.023053 10714 20181213_JW_Orientia_Karp_1_3 92.467 26.795 32516000 14335000 9775600 6991900 0 0 1413600 0 0 2727 1782 2386 16512;16513;16514;16515 10776 10776 1392 1 FSMTVDMPAEWR 2 Oxidation (M) 1500.6377 0.63773561 1150 Karp_00511 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 47.303 47.649 2 0.0003999 16078 20181213_JW_Orientia_Karp_2_2 146.11 106.05 99627000 14983000 21281000 14809000 13600000 9331100 9367900 2188400 14066000 2728 1150 2387 16516;16517;16518;16519;16520;16521;16522;16523 10777;10778;10779;10780;10781;10782;10783 10781 681;682 7 FSMTVDMPAEWR Unmodified 1468.6479 0.64790636 1150 Karp_00511 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 64.972 65.148 2 2.2458E-16 28105 20181213_JW_Orientia_Karp_1_3 211.86 162.45 64659000 22840000 15499000 18039000 0 3311300 3305100 0 1664400 2729 1150 2387 16524;16525;16526;16527;16528;16529 10784;10785;10786;10787 10786 4 FSMVVQDGIVK Unmodified 1221.6427 0.64274463 1645 V9HW35;P30044-2;P30044;P30044-3;P30044-4 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS 1 54.915 54.915 2 0.018386 22425 20181213_JW_Orientia_Karp_1_1 101.38 67.128 0 0 0 0 0 0 0 0 0 2730 1645 2388 16530 10788 10788 1 FSMVVQDGIVK Oxidation (M) 1237.6377 0.63765925 1645 V9HW35;P30044-2;P30044;P30044-3;P30044-4 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 1 0 By MS/MS 1 45.456 45.707 2 0.0072955 15447 20181213_JW_Orientia_Karp_2_3 98.04 52.705 1517000 0 0 0 0 0 1517000 0 0 2731 1645 2388 16531 10789 10789 1269 1 FSNSSSSNEFSK Unmodified 1319.563 0.56297399 817 CON__Q5D862;Q5D862 FLG2 Filaggrin-2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 27.98 28.372 2 0.028199 6170 20181213_JW_Orientia_Karp_2_2 80.834 37.392 6477700 2223600 0 0 0 874600 1037200 1394500 947830 + 2732 817 2389 16532;16533;16534;16535;16536 10790 10790 1 FSNVSPEFK Unmodified 1053.5131 0.51311067 1361 Karp_01814 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 40.991 41.424 2 0.022808 13251 20181213_JW_Orientia_Karp_3_1 91.867 31.43 29299000 0 0 11632000 1581200 0 0 16086000 0 2733 1361 2390 16537;16538;16539 10791 10791 1 FSNYSITDIPFPR Unmodified 1555.7671 0.76709352 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 67.335 67.536 2 3.8759E-17 29727 20181213_JW_Orientia_Karp_1_3 215.77 163.79 189090000 62672000 24169000 50711000 0 18588000 7489600 7317200 18143000 2734 1168 2391 16540;16541;16542;16543;16544;16545;16546 10792;10793;10794;10795;10796;10797 10794 6 FSPGAPGGSGSQPNQK Unmodified 1514.7114 0.71136956 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;B4DQR8;H7C3D3 ZYX Zyxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 29.562 29.912 2 0.00023536 7841 20181213_JW_Orientia_Karp_1_2 143.55 74.89 142530000 52959000 17286000 24872000 19553000 6467700 0 21391000 0 2735 1812 2392 16547;16548;16549;16550;16551;16552;16553 10798;10799;10800;10801;10802;10803 10799 6 FSPLTTNLINLLAENGR Deamidation (NQ) 1872.9945 0.99452728 1679 Q53HH2;P48047;H7C0C1 ATP5O ATP synthase subunit O, mitochondrial yes no 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 75.46 75.492 2 6.3068E-06 34924 20181213_JW_Orientia_Karp_1_3 176.43 117.31 27698000 13716000 8857900 0 1955200 2222700 0 0 946900 2736 1679 2393 16554;16555;16556;16557;16558;16559 10804;10805 10805 1122 1 FSPVTPK Unmodified 774.42759 0.42759012 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;B4DQR8;H7C3D3 ZYX Zyxin yes no 0 0 0 0 By MS/MS 1 33.164 33.514 2 0.04054 9622 20181213_JW_Orientia_Karp_1_2 91.9 55.715 0 0 0 0 0 0 0 0 0 2737 1812 2394 16560 10806 10806 1 FSQELLSNGELNHLPLK Deamidation (NQ) 1939.0051 0.005091963 397 B4DNQ1;E9PKP7;A8K962;P17480-2;P17480;B4DLB0;O00164;E9PLT2 UBTF Nucleolar transcription factor 1 yes no 0 1 0 0 By MS/MS By matching By MS/MS 1 1 1 60.369 60.552 3 0.022117 26071 20181213_JW_Orientia_Karp_1_1 83.966 54.954 42605000 21753000 11214000 9637700 0 0 0 0 0 2738 397 2395 16561;16562;16563 10807;10808 10807 149 2 FSQQQIK Unmodified 877.46577 0.46576654 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 24.969 25.311 2 0.013466 4785 20181213_JW_Orientia_Karp_3_2 124.59 27.122 33611000 0 10001000 8799400 4778400 3059000 2336900 4636900 0 2739 1395 2396 16564;16565;16566;16567;16568;16569;16570 10809;10810;10811;10812 10812 4 FSSCGGGGGSFGAGGGFGSR Unmodified 1764.7274 0.72743033 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 3 3 44.596 45.027 2 2.4964E-16 14778 20181213_JW_Orientia_Karp_2_3 182.7 144.39 149060000 24260000 24292000 38645000 5974000 0 11701000 37429000 6756000 + 2740 995;996 2397 16571;16572;16573;16574;16575;16576;16577;16578;16579;16580;16581 10813;10814;10815;10816;10817;10818;10819;10820;10821;10822 10818 10 FSSQQAATK Unmodified 966.47706 0.47705951 1523 O75475-3;O75475-2;O75475;Q05CM9 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 19.194 19.423 2 0.033847 3511 20181213_JW_Orientia_Karp_1_3 75.652 40.296 8309100 2238300 3244800 1933300 447190 0 0 445470 0 2741 1523 2398 16582;16583;16584;16585;16586 10823 10823 1 FSSSGGGGGGGR Unmodified 981.42642 0.42642093 1653 P35527 KRT9 Keratin, type I cytoskeletal 9 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 14.644 14.907 2 0.00037675 2292 20181213_JW_Orientia_Karp_3_1 154.01 77.237 35367000 9777600 9011400 0 8915900 0 0 7661700 0 + 2742 1653 2399 16587;16588;16589;16590 10824;10825 10825 2 FSSSGGGGGGGRFSSSSGYGGGSSR Unmodified 2197.9373 0.93729976 1653 P35527 KRT9 Keratin, type I cytoskeletal 9 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 28.207 28.537 3 0.034182 6155 20181213_JW_Orientia_Karp_2_2 76.156 52.827 28903000 2976800 2283800 6837400 1093000 13297000 1892200 0 522320 + 2743 1653 2400 16591;16592;16593;16594;16595;16596;16597 10826 10826 0 FSSSSGYGGGSSR Unmodified 1234.5214 0.52144352 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 24.359 24.701 2 0.00072281 6078 20181213_JW_Orientia_Karp_1_2 140.78 91.357 283760000 59265000 3333300 2503400 93100000 4308300 0 11274000 109980000 + 2744 1653 2401 16598;16599;16600;16601;16602;16603;16604;16605;16606;16607;16608;16609;16610 10827;10828;10829;10830;10831;10832;10833;10834;10835;10836;10837 10830 11 FSSSSSLPHK Unmodified 1075.5298 0.52982336 1366 Karp_01876 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 24.406 24.791 3 0.026553 5510 20181213_JW_Orientia_Karp_3_1 72.243 24.152 13040000 0 4250900 2364400 1969600 0 1018000 2796200 640840 2745 1366 2402 16611;16612;16613;16614;16615;16616 10838 10838 1 FSSSSYNAK Unmodified 989.44543 0.44542503 1449 Karp_02529 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 23.732 24.058 2 0.01833 5344 20181213_JW_Orientia_Karp_1_3 85.161 39.826 29219000 0 16165000 4662600 2543300 1952500 1399900 2495300 0 2746 1449 2403 16617;16618;16619;16620;16621;16622 10839 10839 1 FSTPEQAAK Unmodified 977.48181 0.48181054 477 B2R959;Q6NTA2;P14866;M0QXS5;P14866-2;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By matching By MS/MS 1 1 28.939 29.038 2 0.034841 7363 20181213_JW_Orientia_Karp_1_3 75.043 8.614 28756000 19405000 0 9351400 0 0 0 0 0 2747 477 2404 16623;16624 10840 10840 1 FSVPGFK Unmodified 780.41703 0.41702544 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 51.64 51.927 2 0.020952 18539 20181213_JW_Orientia_Karp_2_1 101.21 40.918 43909000 9779500 10096000 0 13502000 0 10532000 0 0 2748 1782 2405 16625;16626;16627;16628 10841 10841 1 FSYILSPR Unmodified 981.52837 0.5283668 1239 Karp_00906 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 51.997 52.258 2 0.0041792 20744 20181213_JW_Orientia_Karp_1_1 143.01 95.094 220390000 63301000 79246000 0 33446000 19764000 24635000 0 0 2749 1239 2406 16629;16630;16631;16632;16633;16634 10842;10843;10844;10845;10846;10847 10842 6 FTAQDQQAVR Unmodified 1162.5731 0.57308516 1924 Q8WWP7 GIMAP1 GTPase IMAP family member 1 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 28.627 28.827 2 0.0025289 7406 20181213_JW_Orientia_Karp_1_2 112.71 41.019 15109000 10294000 2662600 1871100 0 0 281090 0 0 2750 1924 2407 16635;16636;16637;16638 10848;10849 10849 2 FTASAGIQVVGDDLTVTNPK Unmodified 2032.0477 0.047685059 93 A0A024R4F1;P06733;E2DRY6;P06733-2;A4QMW8 ENO1 Alpha-enolase;Enolase yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 61.531 61.882 2 0.00020577 23823 20181213_JW_Orientia_Karp_2_2 149.6 106.1 24546000 0 2731200 5948200 2370700 6757700 4082600 1084400 1571200 2751 93 2408 16639;16640;16641;16642;16643;16644;16645 10850;10851;10852;10853 10851 4 FTDDYYK Unmodified 950.40216 0.40216323 1395 Karp_02151 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 35.747 36.08 2 0.017678 10748 20181213_JW_Orientia_Karp_1_3 106.42 72.677 378430000 97353000 114800000 102490000 17478000 0 424610 45891000 0 2752 1395 2409 16646;16647;16648;16649;16650;16651;16652 10854;10855;10856 10854 3 FTDEEVDELYR Unmodified 1414.6252 0.62523989 1831;1498 O14950;Q53HL1;J3QRS3;P19105 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 52.015 52.394 2 1.524E-45 20140 20181213_JW_Orientia_Karp_1_3 280.2 220.77 2979500000 742220000 479410000 855020000 304670000 241970000 245710000 71688000 38839000 2753 1498;1831 2410 16653;16654;16655;16656;16657;16658;16659;16660;16661 10857;10858;10859;10860;10861;10862;10863;10864;10865;10866 10860 9 FTDEEVDEMYR Oxidation (M) 1448.5766 0.57657514 1626 Q71U02;Q6IBG1;P24844;P24844-2 MYL9 Myosin regulatory light polypeptide 9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 40.193 40.46 2 2.4568E-19 13509 20181213_JW_Orientia_Karp_1_1 240.13 196.49 46101000 12658000 4856600 13099000 0 4169500 3397600 7919900 0 2754 1626 2411 16662;16663;16664;16665;16666;16667 10867;10868;10869;10870;10871;10872 10867 1252 6 FTDEEVDEMYR Unmodified 1432.5817 0.58166052 1626 Q71U02;Q6IBG1;P24844;P24844-2 MYL9 Myosin regulatory light polypeptide 9 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 48.13 48.43 2 0.0052177 18029 20181213_JW_Orientia_Karp_1_1 104.42 85.161 25029000 6323200 0 10709000 4265200 1671700 1975500 84512 0 2755 1626 2411 16668;16669;16670;16671;16672;16673 10873 10873 1 FTDSIVGSQLDISTTLPDNYPDSK Unmodified 2612.2494 0.24935757 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 70.407 70.523 3 2.2779E-10 28159 20181213_JW_Orientia_Karp_2_2 156.36 109.87 354420000 113770000 57086000 63607000 0 27680000 21478000 70801000 0 2756 1252 2412 16674;16675;16676;16677;16678;16679 10874;10875;10876;10877;10878 10877 5 FTEDNIFLLGK Unmodified 1295.6762 0.67615325 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 65.615 65.803 2 0.00015771 29249 20181213_JW_Orientia_Karp_1_1 157.75 118.97 108360000 57401000 0 0 0 15837000 13121000 21999000 0 2757 1188 2413 16680;16681;16682;16683 10879 10879 1 FTEYYNQITGLK Unmodified 1475.7296 0.72964538 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.635 54.015 2 1.7942E-16 21404 20181213_JW_Orientia_Karp_1_2 214.67 138.61 58124000 32309000 10047000 0 4425500 3958300 5541600 1000200 842430 2758 1149 2414 16684;16685;16686;16687;16688;16689;16690;16691 10880;10881;10882 10881 3 FTGSQPFGQGVEHATANK Unmodified 1874.8911 0.89112484 186 A0A024R9Q1;P07996;P07996-2 THBS1 Thrombospondin-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 37.724 38.111 3 3.4731E-06 11034 20181213_JW_Orientia_Karp_3_1 174.4 125.18 1301800000 525980000 257300000 231780000 63164000 39661000 0 183910000 0 + 2759 186 2415 16692;16693;16694;16695;16696;16697;16698;16699;16700 10883;10884;10885;10886;10887;10888;10889;10890 10888 8 FTNIGPDTMR Oxidation (M) 1166.539 0.53900784 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;Q6MZM7;Q6N084;Q59G22;H0Y7Z1;Q5CZ99 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.117 37.467 2 0.0024911 12031 20181213_JW_Orientia_Karp_1_1 110.38 67.258 637660000 260530000 179120000 107500000 31040000 0 0 59472000 0 2760 85 2416 16701;16702;16703;16704;16705 10891;10892;10893;10894;10895 10891 97 5 FTNIGPDTMR Unmodified 1150.5441 0.54409322 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;Q6MZM7;Q6N084;Q59G22;H0Y7Z1;Q5CZ99 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 43.821 44.121 2 4.7603E-05 14399 20181213_JW_Orientia_Karp_3_1 156.16 81.996 167090000 43353000 45937000 64910000 0 0 0 12887000 0 2761 85 2416 16706;16707;16708;16709 10896;10897;10898 10898 3 FTPGTFTNQIQAAFR Unmodified 1697.8526 0.85255449 71 C9J9K3;A0A024R2P0;P08865;Q96RS2 RPSA 40S ribosomal protein SA yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 64.188 64.337 2 8.3471E-09 25478 20181213_JW_Orientia_Karp_2_1 187.78 135.8 86149000 39788000 0 39757000 6604500 0 0 0 0 2762 71 2417 16710;16711;16712;16713 10899;10900;10901;10902 10901 4 FTPGTFTNQIQAAFR Deamidation (NQ) 1698.8366 0.83657007 71 C9J9K3;A0A024R2P0;P08865;Q96RS2 RPSA 40S ribosomal protein SA yes no 0 1 0 0 By matching By MS/MS By matching 1 1 1 63.398 63.548 2 0.02422 27606 20181213_JW_Orientia_Karp_1_2 92.112 59.381 27167000 10019000 8587000 8561400 0 0 0 0 0 2763 71 2417 16714;16715;16716 10903 10903 30 1 FTQAGAEISTLLGR Unmodified 1462.778 0.77799256 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 60.919 61.139 2;3 1.0749E-11 25680 20181213_JW_Orientia_Karp_1_3 201.09 134.13 172860000 44780000 74110000 35342000 0 0 15246000 0 3379200 2764 1341 2418 16717;16718;16719;16720;16721;16722;16723;16724 10904;10905;10906;10907;10908 10906 5 FTQVTPTSLSAQWTPPNVQLTGYR Unmodified 2691.3657 0.36566515 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 70.415 70.531 2;3 4.1282E-07 25436 20181213_JW_Orientia_Karp_3_1 163.45 122.46 580230000 183180000 71784000 165160000 0 39354000 25846000 94911000 0 2765 85 2419 16725;16726;16727;16728;16729;16730;16731;16732;16733;16734;16735;16736 10909;10910;10911;10912;10913;10914;10915 10915 7 FTVAELK Unmodified 806.4538 0.45380487 908 Q7Z3K9;E9PPJ0;Q13435 DKFZp781L0540;SF3B2 Splicing factor 3B subunit 2 yes no 0 0 0 0 By MS/MS By matching 1 1 43.873 44.298 2 0.034446 15118 20181213_JW_Orientia_Karp_1_3 86.472 36.882 4259000 0 0 3545600 0 0 0 713430 0 2766 908 2420 16737;16738 10916 10916 1 FTVYPEITIPDFSQITLK Unmodified 2111.1191 0.11905909 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 75.71 75.73 2 1.999E-23 35461 20181213_JW_Orientia_Karp_1_2 217.19 159.62 241850000 58579000 42858000 66382000 7919700 17659000 14466000 32934000 1047200 2767 1252 2421 16739;16740;16741;16742;16743;16744;16745;16746 10917;10918;10919;10920;10921;10922;10923;10924 10918 8 FVADGIFK Unmodified 895.48035 0.48035398 1623 Q53G83;P23396;P23396-2;F2Z2S8;H0YCJ7;E9PPU1;E9PL09;E9PQ96;E9PJH4;E9PK82;E9PQX2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 53.739 54.039 2 0.0042048 21500 20181213_JW_Orientia_Karp_1_2 138.24 25.159 36005000 30108000 4578300 0 1318100 0 0 0 0 2768 1623 2422 16747;16748;16749 10925;10926 10926 2 FVAFSGEGQSLR Unmodified 1296.6463 0.64625011 1833 Q541A5;Q92890;Q92890-1 ufd1;UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 48.383 48.727 2 0.0044119 17662 20181213_JW_Orientia_Karp_1_3 110.84 69.956 62793000 22751000 0 10098000 7861800 3250000 4476000 63261 14292000 2769 1833 2423 16750;16751;16752;16753;16754;16755;16756 10927;10928;10929 10927 3 FVASEESLSVAK Unmodified 1265.6503 0.65033243 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.37 44.714 2 6.1783E-23 15512 20181213_JW_Orientia_Karp_1_2 233.09 157.35 1032800000 232000000 363130000 203510000 54779000 0 67880000 91178000 20328000 2770 1178 2424 16757;16758;16759;16760;16761;16762;16763 10930;10931;10932;10933;10934;10935;10936 10931 7 FVDEQEEAAAAAAEPGPDPSEVDGLLR Unmodified 2782.2933 0.29334765 163 B3KPC7;A0A024R897;Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 67.606 67.811 2;3 0.00037571 26517 20181213_JW_Orientia_Karp_3_2 152.57 111.14 275630000 72220000 49578000 37981000 0 24131000 12171000 46427000 33120000 2771 163 2425 16764;16765;16766;16767;16768;16769;16770;16771;16772;16773;16774;16775;16776 10937;10938;10939;10940;10941;10942;10943;10944;10945 10945 9 FVDIAGLVK Unmodified 960.56442 0.56441796 1101 Karp_00270 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.943 61.203 2 0.0013667 23742 20181213_JW_Orientia_Karp_2_3 126.52 83.398 116750000 75256000 14423000 7502900 0 7176400 6995400 0 5397200 2772 1101 2426 16777;16778;16779;16780;16781;16782 10946;10947;10948;10949;10950;10951 10950 6 FVDLTPDLVK Unmodified 1145.6332 0.6332258 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 1 64.733 64.937 2 0.00033038 24098 20181213_JW_Orientia_Karp_2_3 140.5 58.953 6586300000 2260300000 0 1915000000 8687000 1186000000 775890000 35802000 404650000 2773 1107 2427 16783;16784;16785;16786;16787;16788;16789;16790;16791;16792;16793;16794;16795;16796;16797;16798;16799;16800 10952;10953;10954;10955;10956;10957;10958;10959;10960;10961;10962;10963;10964;10965;10966;10967 10963 16 FVDLTPDLVKK Unmodified 1273.7282 0.72818882 1107 Karp_00285 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 51.139 51.522 3 7.1945E-05 19812 20181213_JW_Orientia_Karp_1_2 157.97 102.91 83526000 0 35817000 0 30444000 0 17266000 0 0 2774 1107 2428 16801;16802;16803;16804 10968;10969;10970;10971 10968 4 FVEDNYECIK Unmodified 1315.5755 0.57545293 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 42.793 43.123 2 4.5907E-06 13418 20181213_JW_Orientia_Karp_3_2 172.98 101.29 537880000 177850000 161860000 74657000 35638000 3952800 0 71715000 12203000 2775 1349 2429 16805;16806;16807;16808;16809;16810;16811 10972;10973;10974;10975 10975 4 FVFAGLVDK Unmodified 994.54877 0.54876789 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 59.841 60.162 2 0.0014513 21812 20181213_JW_Orientia_Karp_3_2 125.31 82.191 225640000 90251000 17342000 51965000 5772500 20911000 32454000 794810 6152100 2776 1193 2430 16812;16813;16814;16815;16816;16817;16818;16819 10976;10977;10978;10979;10980;10981;10982;10983;10984 10984 9 FVFAVHNGNK Deamidation (NQ) 1132.5665 0.56654322 1238 Karp_00905 yes yes 0 1 0 0 By matching By MS/MS By matching 1 1 1 41.679 41.862 3 0.0075359 13897 20181213_JW_Orientia_Karp_1_2 99.442 61.714 248880000 114890000 68346000 65645000 0 0 0 0 0 2777 1238 2431 16820;16821;16822 10985 10985 639 1 FVFGTTPEDILR Unmodified 1393.7242 0.72416608 186 A0A024R9Q1;P07996;P07996-2;A0PJG0;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 68.387 68.617 2 5.6647E-08 30951 20181213_JW_Orientia_Karp_1_1 192.91 91.653 658350000 147430000 92093000 139580000 28646000 35515000 37238000 118950000 58904000 + 2778 186 2432 16823;16824;16825;16826;16827;16828;16829;16830;16831 10986;10987;10988;10989;10990;10991;10992;10993;10994 10986 9 FVIHCNSPVWGADK Unmodified 1628.7769 0.7769467 1518 O75367-2;O75367-3;O75367;Q59FH0;B4DJC3 H2AFY Core histone macro-H2A.1;Histone H2A yes no 0 0 0 0 By matching By MS/MS 1 1 46.08 46.505 2 0.015636 15606 20181213_JW_Orientia_Karp_3_1 89.301 52.776 9164700 0 0 7981700 0 0 0 1183000 0 2779 1518 2433 16832;16833 10995 10995 1 FVLINWTGEGVNDVR Unmodified 1717.8788 0.87876924 657 B4DXL9;Q9UJU6;Q9UJU6-2;Q9UJU6-3;F8WBG8;B4DDP6 DBNL Drebrin-like protein yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 68.87 69.021 2 0.011685 24537 20181213_JW_Orientia_Karp_3_1 94.547 18.981 12894000 0 0 3998700 0 3484100 1318800 4092600 0 2780 657 2434 16834;16835;16836;16837 10996;10997;10998 10997 2 FVLSQAK Unmodified 791.45414 0.45413923 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 35.201 35.558 2 0.019746 10118 20181213_JW_Orientia_Karp_2_3 102.77 17.414 269870000 87101000 65103000 52748000 8546500 21439000 6132200 14488000 14308000 2781 25 2435 16838;16839;16840;16841;16842;16843;16844;16845 10999 10999 1 FVLVQENRPTLTDIVELR Unmodified 2141.1845 0.18445331 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 65.116 65.419 3 0.0037799 29089 20181213_JW_Orientia_Karp_1_1 133.87 102.45 42724000 0 0 0 2409400 14023000 12658000 8586100 5047100 2782 1789 2436 16846;16847;16848;16849;16850;16851 11000;11001;11002;11003;11004 11000 4 FVMLSSGVTR Oxidation (M) 1111.5696 0.56957969 1123 Karp_00323 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 42.964 43.264 2 0.0030191 15129 20181213_JW_Orientia_Karp_1_1 107.21 57.787 56739000 20429000 16652000 7694800 0 0 0 11964000 0 2783 1123 2437 16852;16853;16854;16855 11005;11006 11005 651 2 FVMLSSGVTR Unmodified 1095.5747 0.57466507 1123 Karp_00323 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 49.272 49.572 2 0.0011286 18244 20181213_JW_Orientia_Karp_1_3 121.73 56.975 26527000 0 0 15646000 8305900 2575300 0 0 0 2784 1123 2437 16856;16857;16858 11007 11007 1 FVMQEEFSR Oxidation (M) 1187.5281 0.52810881 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 38.05 38.39 2 0.010722 11012 20181213_JW_Orientia_Karp_2_2 88.495 40.627 41197000 12588000 17956000 0 2650000 3141600 0 4861700 0 2785 516 2438 16859;16860;16861;16862;16863 11008;11009 11008 335 2 FVNVVPTFGK Unmodified 1106.6124 0.61243078 911 E9PR30;P62861 FAU 40S ribosomal protein S30 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 57.396 57.742 2 2.4091E-05 24332 20181213_JW_Orientia_Karp_1_1 161.27 94.917 536750000 184230000 52581000 66119000 34684000 64836000 111340000 307680 22655000 2786 911 2439 16864;16865;16866;16867;16868;16869;16870;16871 11010;11011;11012;11013;11014;11015;11016;11017 11010 8 FVPWNLEQTANAQLGDCK Unmodified 2089.9891 0.98912432 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 64.15 64.326 2;3 1.3432E-09 28093 20181213_JW_Orientia_Karp_1_2 174.68 140.42 207300000 74952000 50923000 45262000 0 14970000 14800000 0 6393500 2787 1395 2440 16872;16873;16874;16875;16876;16877;16878;16879;16880;16881;16882;16883 11018;11019;11020;11021;11022;11023 11019 6 FVQHINFAK Unmodified 1102.5924 0.59236404 1303 Karp_01240 yes yes 0 0 0 0 By MS/MS By matching 1 1 35.846 35.972 3 0.035671 11363 20181213_JW_Orientia_Karp_1_1 59.35 29.032 8011900 6635200 0 0 0 1376800 0 0 0 2788 1303 2441 16884;16885 11024 11024 1 FVQTAVK Unmodified 791.45414 0.45413923 1067 Karp_00016 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 28.036 28.326 2 0.0089419 7216 20181213_JW_Orientia_Karp_1_2 143.11 51.201 21070000 4483200 0 5824000 0 2925800 1628900 6208600 0 2789 1067 2442 16886;16887;16888;16889;16890;16891 11025;11026 11025 2 FVRPNAIVATGR Deamidation (NQ) 1300.7252 0.72516913 1336 Karp_01409 yes yes 0 1 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 39.957 40.207 3 0.015264 13520 20181213_JW_Orientia_Karp_1_1 99.5 37.034 23831000 10461000 7844700 4022200 1328300 0 174730 0 0 2790 1336 2443 16892;16893;16894;16895;16896 11027 11027 773 1 FVRPNAIVATGR Unmodified 1299.7412 0.74115354 1336 Karp_01409 yes yes 0 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 37.811 38.082 3 0.00059556 11956 20181213_JW_Orientia_Karp_1_2 147.62 91.419 88617000 25855000 23079000 27147000 0 7847900 0 4688000 0 2791 1336 2443 16897;16898;16899;16900;16901;16902 11028;11029 11028 2 FVSELWK Unmodified 907.48035 0.48035398 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 1 51.664 52.006 1;2 0.011712 20520 20181213_JW_Orientia_Karp_1_1 121.29 25.335 174240000 47609000 56726000 8624000 24282000 11677000 16968000 7757100 601990 2792 47 2444 16903;16904;16905;16906;16907;16908;16909;16910;16911;16912;16913;16914 11030;11031;11032;11033;11034;11035 11030 4 FVSISDLLVPK Unmodified 1216.7067 0.7067251 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q8TB95;B3KVE3 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 72.248 72.335 2 4.7081E-09 33255 20181213_JW_Orientia_Karp_1_2 195.79 128.29 95966000 19704000 15116000 16071000 0 9471400 2962400 30374000 2267800 2793 596 2445 16915;16916;16917;16918;16919;16920;16921 11036;11037;11038;11039;11040 11037 5 FVSLEDTIYGFK Unmodified 1417.7129 0.71293269 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 67.85 68.051 2 2.4261E-31 26523 20181213_JW_Orientia_Karp_3_2 254.57 194.55 401990000 80691000 62048000 82791000 0 64852000 38411000 36466000 36734000 2794 1341 2446 16922;16923;16924;16925;16926;16927;16928;16929;16930 11041;11042;11043;11044;11045;11046;11047;11048;11049 11049 9 FWEVISDEHGIDPAGGYVGDSALQLER Unmodified 2959.3988 0.39881578 1964 Q9BUF5;B4DP54;K7ESM5;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 TUBB6 Tubulin beta-6 chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 70.297 70.427 3 6.9402E-11 31920 20181213_JW_Orientia_Karp_1_2 146.5 117.03 73627000 36497000 13601000 13081000 1970200 0 0 8477400 0 2795 1964 2447 16931;16932;16933;16934;16935 11050;11051;11052 11051 3 FWEVISDEHGIDPTGTYHGDSDLQLDR Unmodified 3101.4003 0.40027234 1566;602 Q5JP53;Q5SU16;P07437;Q6LC01;B4DY90;B4DMU8;B4DMJ5 TUBB Tubulin beta chain no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 62.151 62.393 3 7.6725E-11 26938 20181213_JW_Orientia_Karp_1_2 137.38 50.064 172550000 82637000 41013000 34426000 0 0 9653600 0 4823300 2796 1566;602 2448 16936;16937;16938;16939;16940 11053;11054;11055;11056 11054 4 FWEVISDEHGIDPTGTYHGDSDLQLER Unmodified 3115.4159 0.4159224 1747;1550 P04350;B4DJ43;M0R2D3;M0R278;M0QY85;M0QZL7;M0R0X0;M0QY37;M0QX14;M0QYM7;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;B4DNW1 TUBB4A;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta-4B chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 61.688 61.921 4 0.019935 26271 20181213_JW_Orientia_Karp_1_3 49.618 25.342 382330000 145330000 96204000 66802000 14507000 31743000 27741000 0 0 2797 1550;1747 2449 16941;16942;16943;16944;16945;16946 11057;11058;11059;11060 11059 4 FWGCPIPIIHCK Unmodified 1526.7526 0.75264621 1423 Karp_02309 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 56.354 56.529 3 0.034567 23608 20181213_JW_Orientia_Karp_1_1 75.652 47.292 44627000 18622000 0 11771000 0 4574000 9659900 0 0 2798 1423 2450 16947;16948;16949;16950 11061;11062 11061 2 FWGTPIPIWISSDNNYPR Deamidation (NQ) 2163.0425 0.042540102 1123 Karp_00323 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 75.953 75.977 2 0.0037203 35328 20181213_JW_Orientia_Karp_1_3 107.65 69.625 22965000 7543900 4354100 9128600 1938100 0 0 0 0 2799 1123 2451 16951;16952;16953;16954 11063;11064;11065 11064 501;502 2 FWIGLQR Unmodified 918.50757 0.50757178 1840 Q8IXK1;Q59EB6;Q9NPY3;B4DSX2 CD93 Complement component C1q receptor yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 57.49 57.665 2 0.041972 23544 20181213_JW_Orientia_Karp_1_3 82.263 39.788 16951000 6662900 0 4822000 0 1573100 3893200 0 0 2800 1840 2452 16955;16956;16957;16958 11066 11066 1 FWINIFPSIPVSK Unmodified 1546.8548 0.85478632 1235 Karp_00902 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 75.456 75.472 2 3.1792E-34 34912 20181213_JW_Orientia_Karp_1_3 245.13 129.43 226960000 71210000 33742000 53994000 0 14268000 15424000 29571000 8755100 2801 1235 2453 16959;16960;16961;16962;16963;16964;16965 11067;11068;11069;11070;11071;11072;11073;11074;11075 11070 9 FWRPEEPIEVIRPDIAALVR Unmodified 2405.3219 0.32194985 624 B4DPY0 Glutathione peroxidase yes yes 0 0 0 2 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 67.859 67.984 4 0.0064179 30597 20181213_JW_Orientia_Karp_1_1 89.502 67.933 17629000 6962300 5081600 4656200 0 0 928580 0 0 2802 624 2454 16966;16967;16968;16969 11076;11077;11078 11076 3 FWVMVTR Unmodified 937.48439 0.4843935 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 56.499 56.769 2 0.011591 23684 20181213_JW_Orientia_Karp_1_1 119.89 72.69 153930000 55503000 21536000 46482000 2925500 0 27484000 0 0 2803 1251 2455 16970;16971;16972;16973;16974;16975 11079;11080;11081;11082;11083 11079 5 FWVMVTR Oxidation (M) 953.47931 0.47930812 1251 Karp_00928 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 50.66 51.054 2 0.0097441 19186 20181213_JW_Orientia_Karp_1_3 121.29 65.851 179720000 0 62129000 20988000 57231000 12413000 24793000 1750800 415810 2804 1251 2455 16976;16977;16978;16979;16980;16981;16982;16983 11084;11085;11086;11087;11088;11089;11090;11091 11086 810 8 FYALPQAPQQFK Unmodified 1436.7452 0.74523587 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 55.914 56.272 2 0.0006786 23319 20181213_JW_Orientia_Karp_1_1 133.23 88.917 229050000 65702000 39155000 52575000 13645000 27046000 20801000 6890600 3239200 2805 1168 2456 16984;16985;16986;16987;16988;16989;16990;16991 11092;11093;11094;11095;11096;11097;11098;11099 11092 8 FYALSASFEPFSNK Unmodified 1606.7668 0.76675917 1636 Q53G71;V9HW88;P27797;B4DHR1 HEL-S-99n;CALR Calreticulin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 66.742 66.934 2 1.4409E-07 26670 20181213_JW_Orientia_Karp_2_1 183.99 131.26 77863000 26955000 5445600 22353000 6980600 11257000 4638900 233790 0 2806 1636 2457 16992;16993;16994;16995;16996;16997;16998 11100;11101;11102;11103 11102 4 FYDEISAHPLR Unmodified 1346.6619 0.66190017 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 43.661 43.973 3 0.03401 15073 20181213_JW_Orientia_Karp_1_2 87.568 64.54 17042000 0 7927100 7306700 1034500 0 773650 0 0 2807 1449 2458 16999;17000;17001;17002 11104 11104 1 FYDLAIK Unmodified 868.46945 0.46945494 1259 Karp_00993 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 51.265 51.705 2 0.030103 18398 20181213_JW_Orientia_Karp_2_1 89.369 20.885 28496000 0 17065000 0 5972800 0 5133800 0 324960 2808 1259 2459 17003;17004;17005;17006 11105;11106 11105 2 FYDLIVK Unmodified 896.50076 0.50075507 1240 Karp_00907 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 54.594 54.844 2 0.011712 22415 20181213_JW_Orientia_Karp_1_1 121.29 55.62 97165000 34736000 0 23809000 4556200 10696000 23367000 0 0 2809 1240 2460 17007;17008;17009;17010;17011 11107;11108;11109;11110;11111 11107 5 FYDLIVKPVVTEK Unmodified 1549.8756 0.87558134 1240 Karp_00907 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.344 55.66 3 0.00018831 23006 20181213_JW_Orientia_Karp_1_1 162.22 95.516 743690000 223440000 215060000 98845000 45020000 57677000 102820000 0 831690 2810 1240 2461 17012;17013;17014;17015;17016;17017;17018 11112;11113;11114;11115;11116;11117;11118 11112 7 FYEAFSK Unmodified 890.41742 0.41741937 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF4 HSP90AB1;HSP90Bf Heat shock protein HSP 90-beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 41.185 41.485 2 0.011997 14138 20181213_JW_Orientia_Karp_1_1 124.59 64.3 143850000 45830000 52365000 31546000 0 0 0 14108000 0 2811 251 2462 17019;17020;17021;17022 11119;11120;11121;11122 11119 4 FYEEVHDLER Unmodified 1335.6095 0.60953025 239;221 E9PNW0;E9PJJ2;E9PS34;E9PNJ7;C9J6D1;A0A024RCC9;B7ZAK9;B7ZB83;B4DS05;Q99733;Q99733-2;E9PKT8;C9JZI7;B7ZAC7;A8MXH2;F8W118;F8VV59;B7Z9C2;A0A024RBE6;B3KV44;F8VRJ2;H0YH88;H0YHC3;F8W020;F8VXI6;F8VUX1;F8VY35;F8W543;F8W0J6;F5H4R6;B7Z2V4;H0YIV4;A0A024RBB7;P55209-2;P55209;B7Z5H0;F8VVB5 NAP1L4;NAP1L1 Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1 no no 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 39.916 40.245 3 0.0098694 12850 20181213_JW_Orientia_Karp_1_3 79.974 37.638 135150000 65448000 17463000 20529000 9748400 0 0 21966000 0 2812 239;221 2463 17023;17024;17025;17026;17027 11123;11124 11123 2 FYEPPSVK Unmodified 965.48583 0.48583328 1124 Karp_00325 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.446 40.766 2 0.004443 13272 20181213_JW_Orientia_Karp_1_2 131.03 99.271 2378800000 401060000 485210000 486580000 222860000 273300000 42223000 436240000 31377000 2813 1124 2464 17028;17029;17030;17031;17032;17033;17034;17035 11125;11126;11127;11128;11129;11130;11131;11132 11126 8 FYEQFSK Unmodified 947.43888 0.43888309 1057 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q96HX7;Q86U12 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 38.417 38.682 2 0.018491 12663 20181213_JW_Orientia_Karp_1_1 104.75 33.032 135460000 63191000 35912000 33739000 0 0 0 0 2616500 2814 1057 2465 17036;17037;17038;17039 11133;11134;11135 11133 3 FYEQMNGPVAGASR Oxidation (M);Deamidation (NQ) 1542.6773 0.67729224 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;E9PK01;P29692-4;Q71RH4;Q9H7G6;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PL71;E9PN91;E9PIZ1;H0YCK7;E9PK06;E9PKK3;E9PK72 EEF1D Elongation factor 1-delta yes no 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 2 2 1 39.591 39.908 2 1.4324E-12 12040 20181213_JW_Orientia_Karp_3_2 209.67 158.14 115010000 28619000 25731000 23448000 7742400 1138800 13971000 10405000 3954800 2815 1641 2466 17040;17041;17042;17043;17044;17045;17046;17047;17048;17049;17050;17051;17052;17053;17054 11136;11137;11138;11139;11140;11141;11142;11143;11144;11145;11146;11147 11147 1092;1937 1267 12 FYEQMNGPVAGASR Deamidation (NQ) 1526.6824 0.68237762 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;E9PK01;P29692-4;Q71RH4;Q9H7G6;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PL71;E9PN91;E9PIZ1;H0YCK7;E9PK06;E9PKK3;E9PK72 EEF1D Elongation factor 1-delta yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 1 2 46.901 47.217 2 1.1121E-05 16221 20181213_JW_Orientia_Karp_1_2 177.81 129.53 109730000 26505000 25003000 36962000 8512400 3380400 3611300 260690 5498900 2816 1641 2466 17055;17056;17057;17058;17059;17060;17061;17062;17063;17064;17065;17066 11148;11149;11150;11151;11152;11153;11154;11155;11156 11151 1092;1937 9 FYPEDVSEELIQDITQR Unmodified 2080.9953 0.99531514 1630 V9HWC0;P26038;Q6PJT4;V9GZ54 HEL70;MSN Moesin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 2 2 2 74.576 74.619 2;3 0.00070997 34656 20181213_JW_Orientia_Karp_1_2 149.35 94.15 105600000 29021000 23480000 26910000 263690 12125000 0 6577500 7225500 2817 1630 2467 17067;17068;17069;17070;17071;17072;17073;17074;17075;17076;17077;17078;17079 11157;11158;11159 11158 2 FYQSLLTYSK Unmodified 1248.639 0.63903946 1106 Karp_00284 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.184 53.492 2 2.3398E-07 19372 20181213_JW_Orientia_Karp_2_1 193.52 139.37 376990000 72818000 71733000 115500000 41295000 24674000 50863000 107770 0 2818 1106 2468 17080;17081;17082;17083;17084;17085;17086 11160;11161;11162;11163;11164;11165 11163 6 FYQVNLK Unmodified 910.49125 0.49125301 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 43.62 43.89 2 0.011858 15501 20181213_JW_Orientia_Karp_1_1 122.98 63.998 40261000 16568000 11957000 7516600 0 1225200 0 2995300 0 2819 1188 2469 17087;17088;17089;17090;17091 11166;11167;11168 11166 3 FYSSGSEEDNFK Unmodified 1408.5783 0.5782897 1192 Karp_00723 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 37.834 38.135 2 8.0518E-17 12302 20181213_JW_Orientia_Karp_1_1 220.82 149.31 121440000 26455000 28445000 46394000 0 4826500 2650100 9533500 3136500 2820 1192 2470 17092;17093;17094;17095;17096;17097;17098 11169;11170;11171;11172 11169 4 FYSVNVDYSK Unmodified 1220.5714 0.57135383 188 A0A024R9Z0;O00483 NDUFA4 Cytochrome c oxidase subunit NDUFA4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.271 47.616 2 1.545E-06 17188 20181213_JW_Orientia_Karp_1_2 182.39 128.62 125080000 33262000 40274000 22748000 6235100 4347000 4883600 476720 12849000 2821 188 2471 17099;17100;17101;17102;17103;17104;17105;17106 11173;11174;11175 11174 3 GAAAAATGQPGTAPAGTPGAPPLAGMAIVK Oxidation (M) 2587.3428 0.34282122 474 B2R8R5;Q13263;Q13263-2;M0R0K9 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 54.02 54.295 3 6.7561E-07 21985 20181213_JW_Orientia_Karp_1_1 106.88 70.353 58411000 17284000 11836000 25738000 3553200 0 0 0 0 2822 474 2472 17107;17108;17109;17110 11176;11177;11178 11176 310 3 GAAGSCTAASFLQK Unmodified 1367.6503 0.65034921 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 42.752 43.023 2 9.582E-35 14386 20181213_JW_Orientia_Karp_1_3 261.52 128.76 605380000 197570000 190970000 106860000 0 24488000 0 85495000 0 2823 1349 2473 17111;17112;17113;17114;17115 11179;11180;11181 11181 3 GAAITSIK Unmodified 759.44905 0.44905385 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 30.129 30.582 2 0.018329 8741 20181213_JW_Orientia_Karp_1_1 90.37 5.4543 10947000 4990000 0 0 1099200 2790000 0 1550200 517560 2824 1219 2474 17116;17117;17118;17119;17120;17121 11182;11183 11182 2 GACLLPK Unmodified 757.41565 0.41564523 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 35.74 36.09 2 0.010672 10751 20181213_JW_Orientia_Karp_1_3 143.22 98.614 142620000 45782000 25858000 21695000 7893200 0 0 41392000 0 + 2825 792 2475 17122;17123;17124;17125;17126;17127;17128 11184;11185;11186;11187;11188;11189;11190 11186 7 GACVGCPSSTMTLK Unmodified 1467.652 0.65200546 1200 Karp_00819 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.689 41.009 2 0.0022973 13399 20181213_JW_Orientia_Karp_1_2 123.01 78.582 64963000 26592000 11244000 11947000 1562900 852370 3524000 6994300 2246400 2826 1200 2476 17129;17130;17131;17132;17133;17134;17135;17136 11191;11192;11193;11194;11195;11196;11197 11192 7 GACVGCPSSTMTLK Oxidation (M) 1483.6469 0.64692009 1200 Karp_00819 yes yes 0 0 1 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 33.294 33.687 2 7.4456E-05 9345 20181213_JW_Orientia_Karp_3_1 162.26 111.79 66677000 9308800 12242000 18247000 7536000 0 0 12996000 6347100 2827 1200 2476 17137;17138;17139;17140;17141;17142 11198 11198 764 1 GADFLVTEVENGGSLGSK Deamidation (NQ) 1779.8527 0.85267365 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;A0A024R609;H3BQ34 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 62.004 62.277 2 1.1798E-67 27027 20181213_JW_Orientia_Karp_1_1 275.66 206.87 120140000 29048000 41161000 17630000 5139100 11293000 12743000 0 3120700 2828 1597 2477 17143;17144;17145;17146;17147;17148;17149;17150 11199;11200;11201;11202;11203;11204;11205 11199 1064 7 GADFQCFQQAR Unmodified 1326.5775 0.57751861 835 D3DSM4;D3DSM5;P39060-2;P39060-1;P39060;H7BXV5;H7C457;Q8NG19 COL18A1 Collagen alpha-1(XVIII) chain;Endostatin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 41.869 42.199 2 0.039778 14079 20181213_JW_Orientia_Karp_1_2 73.887 23.846 34771000 12394000 7390300 5032900 2287000 0 0 7666700 0 2829 835 2478 17151;17152;17153;17154;17155 11206 11206 1 GAEAANVTGPDGVPVEGSR Unmodified 1781.8544 0.85440498 204;1939 A0A024RAV4;A0A024RAQ1;P16989-2;P16989-3;P16989;Q59EB5;Q96GD7 CSDA;YBX3 Y-box-binding protein 3 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 43.683 44.025 2 6.3958E-24 14145 20181213_JW_Orientia_Karp_2_2 228.76 146.26 58581000 24157000 8234600 13735000 0 0 0 10295000 2158600 2830 204;1939 2479 17156;17157;17158;17159;17160;17161;17162;17163;17164 11207;11208;11209;11210;11211;11212;11213;11214;11215 11212 9 GAEAANVTGPGGVPVQGSK Unmodified 1694.8588 0.85876208 1745 P67809;Q6PKI6;Q05D43;Q7KZ24;H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.025 40.377 2 1.7238E-165 13493 20181213_JW_Orientia_Karp_1_1 360.06 277.23 675580000 79826000 61117000 0 226530000 156990000 0 117310000 33818000 2831 1745 2480 17165;17166;17167;17168;17169;17170;17171 11216;11217;11218;11219;11220;11221;11222;11223 11216 8 GAEAANVTGPGGVPVQGSK Deamidation (NQ) 1695.8428 0.84277766 1745 P67809;Q6PKI6;Q05D43;Q7KZ24;H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 41.742 42.182 2 0.00035549 12962 20181213_JW_Orientia_Karp_2_2 129.29 89.713 7919800 0 0 0 1365100 2978900 0 2962500 613420 2832 1745 2480 17172;17173;17174;17175;17176;17177 11224;11225;11226;11227 11225 1145 4 GAEADQIIEYLK Unmodified 1348.6874 0.68744622 608 D6R937;B4DNK3;Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 61.676 61.885 2 0.00085963 24179 20181213_JW_Orientia_Karp_2_3 150.46 77.85 33084000 12388000 0 10386000 1799300 4587300 3923100 0 0 2833 608 2481 17178;17179;17180;17181;17182 11228;11229 11229 2 GAEAFSFLR Unmodified 996.50288 0.50288033 1062 Karp_00006 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 56.81 57.02 2 0.00077792 23856 20181213_JW_Orientia_Karp_1_1 147.29 73.034 78912000 19172000 5267000 36195000 0 6225100 12053000 0 0 2834 1062 2482 17183;17184;17185;17186;17187 11230;11231;11232;11233;11234 11230 5 GAEASAASEEEAGPQATEPSTPSGPESGPTPASAEQNE Unmodified 3624.5459 0.54594612 1682 P49006 MARCKSL1 MARCKS-related protein yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 50.63 51.014 3 4.6986E-10 18081 20181213_JW_Orientia_Karp_2_2 88.843 72.701 21813000 0 10708000 0 0 2928800 0 8176100 0 2835 1682 2483 17188;17189;17190 11235;11236;11237;11238 11236 4 GAEIFIR Unmodified 804.44939 0.4493882 1290 Karp_01163 yes yes 0 0 0 0 By MS/MS 1 45.406 45.406 2 0.030982 16269 20181213_JW_Orientia_Karp_1_1 100.07 20.613 0 0 0 0 0 0 0 0 0 2836 1290 2484 17191 11239 11239 1 GAEIVADTFR Unmodified 1077.5455 0.54547343 1536 V9HW53;O95865;Q5SSV3;Q5SRR8;H0Y7N1 HEL-S-277;DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 47.431 47.74 2 0.039498 17611 20181213_JW_Orientia_Karp_1_1 72.643 17.579 52289000 11005000 17656000 12236000 5000000 2002400 0 0 4388800 2837 1536 2485 17192;17193;17194;17195;17196;17197 11240 11240 1 GAFASLSELHCDK Unmodified 1433.6609 0.66091389 812 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS By matching 1 1 42.657 43.238 2 0.020624 13954 20181213_JW_Orientia_Karp_3_1 85.813 43.003 7174300 0 0 0 0 0 0 5820800 1353500 + 2838 812 2486 17198;17199 11241 11241 1 GAFSSVSMSGGAGR Oxidation (M) 1285.5721 0.57209888 590 B4DRW1;B4DRR7;B4DKJ0;B4DRS2;CON__P19013;P19013;F8VX05;F8VZR6 KRT4 Keratin, type II cytoskeletal 4 yes no 0 0 1 0 By matching By MS/MS 1 1 31.369 32 2 0.0011769 7808 20181213_JW_Orientia_Karp_3_2 131.12 58.268 4268200 0 0 0 0 0 0 3519800 748420 + 2839 590 2487 17200;17201 11242 11242 363 1 GAGAYICGEETALLESLEGK Unmodified 2066.983 0.98303589 1409 Karp_02226 yes yes 0 0 0 0 By MS/MS 1 71.345 71.555 2 0.035073 28786 20181213_JW_Orientia_Karp_3_2 81.703 0 0 0 0 0 0 0 0 0 0 2840 1409 2488 17202 11243 11243 1 GAGIGGLGITVEGPSESK Unmodified 1627.8417 0.84171503 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.224 56.581 2 7.7053E-17 23504 20181213_JW_Orientia_Karp_1_1 202.61 130.28 397470000 86962000 132640000 106450000 30343000 20406000 13650000 5397300 1624400 2841 1520 2489 17203;17204;17205;17206;17207;17208;17209;17210 11244;11245;11246;11247;11248;11249;11250;11251 11244 8 GAGSAMSTDAYPK Oxidation (M) 1270.55 0.54996646 1533 O95721;C9JAF7 SNAP29 Synaptosomal-associated protein 29;Synaptosomal-associated protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.681 26.026 2 0.00059941 5168 20181213_JW_Orientia_Karp_2_2 147.74 87.625 15406000 2279300 2389100 906010 2516600 1758300 1113000 2660400 1783700 2842 1533 2490 17211;17212;17213;17214;17215;17216;17217;17218 11252;11253;11254;11255;11256;11257;11258;11259 11256 1143 8 GAGSYTIMVLFADQATPTSPIR Oxidation (M) 2311.1518 0.15183255 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 70.055 70.22 3 0.0086949 25234 20181213_JW_Orientia_Karp_3_1 80.303 54.316 27238000 9376600 0 5947300 0 0 0 10327000 1586300 2843 1615 2491 17219;17220;17221;17222 11260;11261 11261 1238 2 GAGSYTIMVLFADQATPTSPIR Unmodified 2295.1569 0.15691793 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 73.528 73.57 3 0.0030015 33743 20181213_JW_Orientia_Karp_1_3 85.166 61.994 93976000 25374000 17724000 27120000 0 0 0 18826000 4932500 2844 1615 2491 17223;17224;17225;17226;17227 11262;11263;11264 11264 3 GAGTGGLGLAIEGPSEAK Unmodified 1583.8155 0.81550028 1797 Q14315-2;Q14315 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 2 2 1 1 1 50.453 50.773 2 0.00017717 20375 20181213_JW_Orientia_Karp_1_3 133.98 77.962 147820000 32710000 46048000 48812000 7478100 3361700 4496900 0 4912600 2845 1797 2492 17228;17229;17230;17231;17232;17233;17234;17235;17236;17237 11265;11266;11267;11268;11269 11268 5 GAGTGGLGLAVEGPSEAK Unmodified 1569.7999 0.79985021 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.47 48.815 2 3.2392E-24 17708 20181213_JW_Orientia_Karp_1_3 224.42 146.75 658490000 208000000 176520000 171810000 29288000 23850000 17518000 3411100 28093000 2846 1615 2493 17238;17239;17240;17241;17242;17243;17244;17245 11270;11271;11272;11273;11274;11275;11276;11277 11272 8 GAGTGGLGLTVEGPCEAK Unmodified 1672.809 0.80903469 1520;1797 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4;Q14315-2;Q14315 FLNB;DKFZp686A1668;FLNC Filamin-B;Filamin-C no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 49.378 49.756 2 1.0651E-06 19004 20181213_JW_Orientia_Karp_1_1 157.56 89.854 92761000 29040000 39415000 0 4331100 0 0 0 19975000 2847 1520;1797 2494 17246;17247;17248;17249 11278;11279;11280 11278 3 GAGTNEDALIEILTTR Unmodified 1672.8632 0.86317875 1590 P12429;D6RFG5;D6RA82;D6RCA8 ANXA3 Annexin A3;Annexin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 70.899 71.05 3 0.0094481 25736 20181213_JW_Orientia_Karp_3_1 95.067 26.79 0 0 0 0 0 0 0 0 0 2848 1590 2495 17250;17251 11281;11282 11282 2 GAIIEIK Unmodified 742.45889 0.45889025 1346 Karp_01522 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 42.612 42.787 2 0.012457 14908 20181213_JW_Orientia_Karp_1_1 135.87 0 132160000 110000000 15003000 4176600 0 2977600 0 0 0 2849 1346 2496 17252;17253;17254;17255 11283 11283 1 GAISGLFVPVLCGSAFK Unmodified 1721.9175 0.91746293 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 73.6 73.632 2 3.7508E-13 29793 20181213_JW_Orientia_Karp_3_2 194.98 140.78 450800000 128390000 67904000 88359000 9664000 21490000 12091000 86617000 36285000 2850 1094 2497 17256;17257;17258;17259;17260;17261;17262;17263;17264 11284;11285;11286;11287;11288;11289;11290;11291 11291 8 GAISYMGENSAISLHNK Oxidation (M) 1806.857 0.85704752 1396 Karp_02152 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.974 39.29 3 0.0011508 12091 20181213_JW_Orientia_Karp_3_1 115.26 86.283 462090000 105800000 98112000 130090000 45497000 25136000 0 57461000 0 2851 1396 2498 17265;17266;17267;17268;17269;17270 11292;11293;11294;11295;11296;11297 11297 995 5 GAISYMGENSAISLHNK Unmodified 1790.8621 0.8621329 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 43.768 44.193 3 0.014334 14406 20181213_JW_Orientia_Karp_3_1 83.37 39.988 66206000 0 0 48826000 0 0 0 17380000 0 2852 1396 2498 17271;17272 11298;11299 11299 2 GAISYMGENSAISLHNK Oxidation (M);Deamidation (NQ) 1807.8411 0.8410631 1396 Karp_02152 yes yes 0 1 1 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 41.137 41.437 3 0.014713 12908 20181213_JW_Orientia_Karp_2_1 77.372 40.602 62581000 9658800 2337300 16726000 8500800 6830500 0 18527000 0 2853 1396 2498 17273;17274;17275;17276;17277;17278 11300 11300 904 995 1 GALALAQAVQR Unmodified 1096.6353 0.63529149 127 A0A024R652;F5H2F4;P11586;B7Z809 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 46.174 46.357 2 0.0091052 16202 20181213_JW_Orientia_Karp_1_3 109.71 59.011 15814000 3952800 4257100 7603900 0 0 0 0 0 2854 127 2499 17279;17280;17281 11301 11301 1 GALALEEK Unmodified 829.45453 0.45453316 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 34.254 34.587 2 0.009836 10153 20181213_JW_Orientia_Karp_1_2 104.37 3.6237 102210000 42894000 38711000 14271000 1703400 2967500 0 1662300 0 2855 47 2500 17282;17283;17284;17285;17286;17287 11302 11302 1 GALDVMATTINNSMK 2 Oxidation (M) 1596.7487 0.74874262 1336 Karp_01409 yes yes 0 0 2 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 43.114 43.405 2 8.4126E-05 15140 20181213_JW_Orientia_Karp_1_1 148.89 107.35 26843000 8793000 7638900 4950300 0 0 2343800 3116900 0 2856 1336 2501 17288;17289;17290;17291;17292 11303;11304;11305 11303 894;895 3 GALDVMATTINNSMK Oxidation (M) 1580.7538 0.753828 1336 Karp_01409 yes yes 0 0 1 0 By MS/MS 1 48.749 48.749 2 0.012441 18336 20181213_JW_Orientia_Karp_1_1 89.44 60.141 12854000 12854000 0 0 0 0 0 0 0 2857 1336 2501 17293 11306 11306 894;895 1 GALHNYK Unmodified 801.41334 0.41333704 1541 P01031 C5 Complement C5;Complement C5 beta chain;Complement C5 alpha chain;C5a anaphylatoxin;Complement C5 alpha' chain yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 14.931 15.156 2 0.02889 2506 20181213_JW_Orientia_Karp_1_1 90.939 53.845 5004800 2344000 1202400 1368400 89969 0 0 0 0 2858 1541 2502 17294;17295;17296;17297 11307;11308 11307 2 GALPLDTVTFYK Unmodified 1323.7075 0.70745338 1643 V9HW71;P30040;P30040-2 HEL-S-107;ERP29 Endoplasmic reticulum resident protein 29 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 63.558 63.788 2 0.0028956 24751 20181213_JW_Orientia_Karp_2_2 116.52 71.764 80514000 18562000 17431000 20149000 0 10433000 11277000 168010 2494500 2859 1643 2503 17298;17299;17300;17301;17302;17303;17304 11309;11310;11311;11312 11309 4 GALQNIIPASTGAAK Unmodified 1410.7831 0.78307794 1551 V9HVZ4;Q2TSD0;P04406-2;P04406;Q0QET7;E7EUT5;A4UCT1;Q5ZEY3 HEL-S-162eP;GAPDH;GAPD Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.974 51.319 2 0.00042938 18357 20181213_JW_Orientia_Karp_2_3 142.76 107.54 839740000 247430000 139900000 91170000 102310000 72165000 97792000 75738000 13233000 2860 1551 2504 17305;17306;17307;17308;17309;17310;17311;17312 11313;11314;11315;11316;11317;11318;11319;11320 11318 8 GALQYLVPILTQTLTK Unmodified 1758.0291 0.029121869 490 B2RBR9;Q14974;B7Z752;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 75.238 75.28 2;3 0.03441 35152 20181213_JW_Orientia_Karp_1_1 62.357 42.309 31323000 13580000 7381000 7412400 785450 0 0 1973700 190470 2861 490 2505 17313;17314;17315;17316;17317;17318 11321;11322 11321 2 GALTAAEWLLGR Unmodified 1256.6877 0.68772099 1441 Karp_02410 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.802 68.967 2 1.5082E-16 24464 20181213_JW_Orientia_Karp_3_1 216.45 117.86 67662000 16582000 342760 13842000 2456100 11685000 7217200 15537000 0 2862 1441 2506 17319;17320;17321;17322;17323;17324;17325 11323;11324;11325;11326;11327;11328 11328 6 GAMSTQQIK Oxidation (M) 978.48043 0.48043033 628 P49588;B4DR45;H3BPK7 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 17.436 17.585 2 0.0087176 2945 20181213_JW_Orientia_Karp_1_3 93.143 19.527 1911600 538350 837070 536220 0 0 0 0 0 2863 628 2507 17326;17327;17328 11329;11330;11331 11331 388 3 GANELYLK Unmodified 906.48108 0.48108226 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 37.633 37.955 2 0.0090088 12313 20181213_JW_Orientia_Karp_1_1 107.01 5.6787 25883000 5762300 7583500 4955900 1371200 3919100 676600 1614100 0 2864 1262 2508 17329;17330;17331;17332;17333;17334;17335 11332 11332 1 GAPAAATAPAPTAHK Unmodified 1330.6993 0.69934831 1926 Q92522 H1FX Histone H1x yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 1 2 1 1 3 2 24.725 25.114 2;3 0.0017806 4782 20181213_JW_Orientia_Karp_3_2 143.97 113.41 55784000 18943000 4684200 1780100 7772300 4244400 5635300 6586900 6137600 2865 1926 2509 17336;17337;17338;17339;17340;17341;17342;17343;17344;17345;17346;17347;17348;17349 11333;11334;11335;11336;11337 11337 5 GAQAAIVVYDITNTDTFAR Unmodified 2025.0167 0.016719282 56 A0A024R1U4;P51148;P51148-2;F8VVK3;K7ENY4;K7ERI8;K7ERQ8 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 By MS/MS By MS/MS 1 1 66.899 67.203 2 4.0206E-07 29526 20181213_JW_Orientia_Karp_1_3 187.08 132.61 4482800 0 0 3543700 0 0 0 0 939140 2866 56 2510 17350;17351 11338;11339 11338 1 GAQLGMK Oxidation (M) 719.36361 0.36360966 1066 Karp_00014 yes yes 0 0 1 0 By MS/MS 1 15.424 15.69 2 0.033489 2452 20181213_JW_Orientia_Karp_1_3 97.596 52.623 0 0 0 0 0 0 0 0 0 2867 1066 2511 17352 11340 11340 1 GASGTFQLK Unmodified 907.47633 0.47633123 1846 Q5SSJ5;Q5SSJ5-2;B0QZK4;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 35.337 35.68 2 0.0050312 10742 20181213_JW_Orientia_Karp_1_2 104.06 36.887 58809000 30339000 13814000 6654800 0 2550600 0 4059100 1390800 2868 1846 2512 17353;17354;17355;17356;17357;17358 11341;11342;11343;11344 11341 4 GASLNDLGQYEEAIK Unmodified 1606.7839 0.7838658 1447 Karp_02466 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 56.119 56.452 2 4.1066E-06 19763 20181213_JW_Orientia_Karp_3_1 171.26 93.724 63650000 19074000 9785200 22055000 6464700 0 4662400 1608500 0 2869 1447 2513 17359;17360;17361;17362;17363;17364 11345;11346;11347;11348 11348 4 GASLNNLGQYEEAMK Oxidation (M) 1639.7512 0.75118546 1152 Karp_01552;Karp_00538 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 43.808 44.15 2 2.183E-19 15600 20181213_JW_Orientia_Karp_1_1 215.02 152.56 43883000 11542000 13777000 12703000 0 0 0 4844100 1016000 2870 1152 2514 17365;17366;17367;17368;17369;17370 11349;11350;11351;11352;11353;11354 11349 685 6 GASLNNLGQYEEAMK Oxidation (M);Deamidation (NQ) 1640.7352 0.73520105 1152 Karp_01552;Karp_00538 yes no 0 1 1 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 46.194 46.511 2 4.5564E-28 16877 20181213_JW_Orientia_Karp_1_1 239.48 168.03 36256000 7889700 8936600 8564500 4310700 0 4877800 1676800 0 2871 1152 2514 17371;17372;17373;17374;17375;17376 11355;11356 11355 546 685 2 GASQAGMLAPGTR Oxidation (M) 1231.5979 0.5979197 1807 Q15417-2;Q15417;E9PDU6;Q15417-3 CNN3 Calponin-3;Calponin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 28.864 29.222 2 8.3258E-08 7419 20181213_JW_Orientia_Karp_1_3 191.79 124.08 73395000 18482000 9676400 8548400 4608500 6053900 2258600 7270000 16498000 2872 1807 2515 17377;17378;17379;17380;17381;17382;17383;17384 11357;11358;11359;11360;11361;11362;11363;11364;11365;11366;11367 11362 1447 11 GASQAGMTGYGMPR 2 Oxidation (M) 1414.5969 0.59693343 1662 P37802;P37802-2;C9J5W6;Q9UI15 TAGLN2;TAGLN3 Transgelin-2;Transgelin-3 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 1 2 25.566 25.93 2 2.4186E-25 5900 20181213_JW_Orientia_Karp_1_2 230.81 188.1 628400000 59415000 76268000 43912000 87420000 169040000 36369000 108950000 47032000 2873 1662 2516 17385;17386;17387;17388;17389;17390;17391;17392;17393;17394;17395;17396 11368;11369;11370;11371;11372;11373;11374;11375;11376;11377;11378 11369 1284;1285 11 GASQAGMTGYGMPR Oxidation (M) 1398.602 0.6020188 1662 P37802;P37802-2;C9J5W6;Q9UI15 TAGLN2;TAGLN3 Transgelin-2;Transgelin-3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 32.592 32.939 2 3.6955E-25 9672 20181213_JW_Orientia_Karp_1_3 228.78 170.11 691800000 155440000 173940000 155760000 72613000 10897000 36307000 86054000 780900 2874 1662 2516 17397;17398;17399;17400;17401;17402;17403;17404;17405;17406;17407;17408;17409;17410;17411 11379;11380;11381;11382;11383;11384;11385;11386;11387;11388;11389;11390;11391;11392;11393;11394 11384 1284;1285 16 GASQAGMTGYGMPR Unmodified 1382.6071 0.60710418 1662 P37802;P37802-2;C9J5W6;Q9UI15 TAGLN2;TAGLN3 Transgelin-2;Transgelin-3 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 39.814 40.174 2 0.00016544 13454 20181213_JW_Orientia_Karp_1_1 158.34 94.803 231160000 53541000 66505000 66868000 18252000 0 0 21743000 4250000 2875 1662 2516 17412;17413;17414;17415;17416;17417 11395;11396 11395 2 GASQAGMTGYGR Oxidation (M) 1170.5088 0.50877035 1761 Q5U0D2;Q01995;Q6FI52;H0YCU9 TAGLN Transgelin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 20.727 21.005 2 3.9408E-08 4048 20181213_JW_Orientia_Karp_1_3 193.3 140.51 12314000 3601300 1326200 3184800 1319700 1077100 892560 912370 0 2876 1761 2517 17418;17419;17420;17421;17422;17423;17424 11397;11398;11399;11400;11401;11402;11403 11399 1376 7 GASVTAQILNQLR Unmodified 1369.7678 0.76776222 1156 Karp_00571 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 58.042 58.418 2 2.6166E-17 24352 20181213_JW_Orientia_Karp_1_2 219.03 122.08 131730000 0 72884000 0 0 35764000 23058000 23602 0 2877 1156 2518 17425;17426;17427;17428;17429;17430;17431;17432 11404;11405;11406;11407;11408;11409;11410;11411 11405 8 GATEFFAAR Unmodified 968.47158 0.4715802 1235 Karp_00902 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.958 45.141 2 0.0010484 15565 20181213_JW_Orientia_Karp_1_3 131.06 77.508 219460000 106210000 74666000 38585000 0 0 0 0 0 2878 1235 2519 17433;17434;17435 11412;11413;11414 11414 3 GATLALTQVTPQDER Unmodified 1598.8264 0.82639932 79 B2R642;A0A024R3I5;P43121;A8K6A6;B3KXZ9 MCAM Cell surface glycoprotein MUC18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 2 1 1 1 2 1 49.733 50.094 2 1.4645E-08 18755 20181213_JW_Orientia_Karp_1_3 182.1 90.16 742680000 153360000 261230000 173860000 41736000 37367000 57582000 3694500 13846000 2879 79 2520 17436;17437;17438;17439;17440;17441;17442;17443;17444;17445;17446 11415;11416;11417 11417 3 GATVTASYKPAILSNGAK Deamidation (NQ) 1748.9309 0.93086439 1436 Karp_02394 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 44.488 44.737 3 0.0006695 15416 20181213_JW_Orientia_Karp_1_3 127.05 99.794 106870000 23407000 55560000 17273000 4934600 0 5698100 0 0 2880 1436 2521 17447;17448;17449;17450;17451 11418;11419;11420;11421 11420 952 4 GATYNIIVEALK Unmodified 1290.7184 0.71835242 85 A0A024R462;B7ZLE5;Q6MZM7;Q6N084;Q68CX6;Q59G22;B4DU16;B4DTK1;Q6PJE5;B4DN21;B4DTH2 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 1 1 62.768 63.051 2 9.1828E-31 27567 20181213_JW_Orientia_Karp_1_1 253.71 185.69 317330000 104190000 63321000 78345000 9878600 42024000 19531000 43364 0 2881 85 2522 17452;17453;17454;17455;17456;17457;17458;17459;17460 11422;11423;11424;11425;11426;11427 11422 5 GAVDGGLSIPHSTK Unmodified 1337.6939 0.69392858 286 B3KTM6;A2RUM7;P46777;Q59GX9;Q5T7N0 RPL5 60S ribosomal protein L5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 1 37.769 38.079 2;3 0.0026287 11914 20181213_JW_Orientia_Karp_1_2 125.97 83.227 158640000 57321000 31726000 48206000 2344500 9581800 0 9459100 0 2882 286 2523 17461;17462;17463;17464;17465;17466;17467;17468;17469;17470;17471;17472 11428;11429;11430;11431;11432;11433;11434 11429 7 GAVHDVK Unmodified 724.38679 0.38678794 1752 P81605 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 0 0 0 0 By MS/MS 1 3.3007 3.3092 2 0.030664 562 20181213_JW_Orientia_Karp_3_2 88.643 40.469 138590 0 0 0 0 0 0 0 138590 2883 1752 2524 17473 11435 11435 1 GAVSAEQVIAGFNR Unmodified 1417.7314 0.73137672 440 B1AQP2;Q9UHV9 PFDN2 Prefoldin subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.427 55.743 2 9.7722E-08 20823 20181213_JW_Orientia_Karp_2_3 208.17 163.31 231980000 40739000 44255000 44119000 29576000 36613000 34396000 0 2284600 2884 440 2525 17474;17475;17476;17477;17478;17479;17480 11436;11437;11438;11439;11440;11441 11440 6 GCAVVEFK Unmodified 908.44259 0.44258826 1701 P52272-2;P52272;Q59ES8;M0R019;B4DEG4;M0R0N3;M0R2T0;M0QYL3 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 38.918 39.118 2 0.040428 12909 20181213_JW_Orientia_Karp_1_1 76.774 26.142 22125000 11816000 9814700 0 0 0 494440 0 0 2885 1701 2526 17481;17482;17483 11442 11442 1 GCLLIGPPGTGK Unmodified 1168.6274 0.62742892 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 50.351 50.6 2 0.013045 19150 20181213_JW_Orientia_Karp_1_2 92.838 42.231 179580000 51147000 44042000 30950000 26283000 10218000 16943000 0 0 2886 1458 2527 17484;17485;17486;17487;17488;17489 11443;11444;11445;11446 11444 4 GCPLSAPDGTAPIITYK Unmodified 1759.8815 0.88147135 1255 Karp_00935 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 56.717 57.033 2 0.031804 23768 20181213_JW_Orientia_Karp_1_1 94.402 46.973 61573000 16676000 11425000 12011000 8813900 4124000 3011900 0 5510800 2887 1255 2528 17490;17491;17492;17493;17494;17495;17496 11447 11447 1 GCYIGQELISR Unmodified 1294.634 0.63397086 1097 Karp_00260 yes yes 0 0 0 0 By MS/MS By matching 1 1 50.002 50.276 2 0.011713 18965 20181213_JW_Orientia_Karp_1_2 93.058 64.361 12562000 0 5867900 6693700 0 0 0 0 0 2888 1097 2529 17497;17498 11448 11448 1 GDATVSYEDPPTAK Unmodified 1449.6624 0.66235368 430 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;H7BY36;C9JGE3;V5JZ30;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 37.814 38.164 2 0.0009379 12319 20181213_JW_Orientia_Karp_1_1 137.01 87.505 15471000 7822900 0 3455500 1965900 0 0 2226300 0 2889 430 2530 17499;17500;17501;17502 11449 11449 1 GDCLGIYGIAR Unmodified 1193.5863 0.58629239 1345 Karp_01521 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 53.935 54.185 2 0.0072059 21349 20181213_JW_Orientia_Karp_1_3 111.06 75.35 25926000 14568000 0 5538300 2448700 1118200 2252600 0 0 2890 1345 2531 17503;17504;17505;17506;17507 11450;11451 11451 2 GDDGIFDDNFIEER Unmodified 1640.6954 0.69544472 1514 O60493;O60493-4;O60493-2 SNX3 Sorting nexin-3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 66.506 66.673 2 6.0293E-46 29650 20181213_JW_Orientia_Karp_1_1 263.57 157.17 35739000 13066000 6121000 7811600 0 5475800 2989100 275580 0 2891 1514 2532 17508;17509;17510;17511;17512;17513 11452;11453;11454;11455;11456 11453 5 GDDLLPAGTEDYIHIR Unmodified 1783.8741 0.87407779 1055 Q6IAV3;K7EM18;P41567;Q6FG85;Q53F41;O60739 SUI1;EIF1;GC20;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 59.523 59.773 3 0.012816 22978 20181213_JW_Orientia_Karp_2_1 90.444 49.461 139220000 59552000 5459000 11457000 750670 38237000 23766000 0 0 2892 1055 2533 17514;17515;17516;17517;17518;17519;17520 11457;11458;11459;11460;11461;11462 11460 6 GDDLSTAILK Unmodified 1031.5499 0.5498901 1708 V9HW80;P55072 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.068 51.318 2 0.00064242 19517 20181213_JW_Orientia_Karp_1_3 131.5 56.291 142100000 28738000 28754000 42081000 17973000 10735000 13817000 0 0 2893 1708 2534 17521;17522;17523;17524;17525;17526 11463 11463 1 GDDQLELIK Unmodified 1029.5342 0.53424004 452;400 B2R603;G3V2Q1;A8K9A4;P07910;D3DPI2;P07910-3;Q569J8;G3V5V7;B2R5W2;G3V4C1;P07910-2;B3KX96;P07910-4;G3V2D6 HNRNPC;hCG_1641229;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2 no no 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 49.089 49.349 2 0.00080184 17355 20181213_JW_Orientia_Karp_2_3 140.11 40.737 114120000 14087000 25187000 20094000 0 17075000 25158000 0 12516000 2894 400;452 2535 17527;17528;17529;17530;17531;17532;17533 11464;11465 11465 2 GDEELDSLIK Unmodified 1117.5503 0.55028404 1580 Q71UI9;P0C0S5;C9J0D1;Q71UI9-3;Q71UI9-4;Q71UI9-2;C9J386 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z;Histone H2A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 53.731 54.008 2 1.4751E-06 19613 20181213_JW_Orientia_Karp_2_2 182.98 90.147 937930000 255630000 313990000 283970000 0 26506000 54615000 0 3220500 2895 1580 2536 17534;17535;17536;17537;17538;17539;17540 11466;11467;11468;11469;11470;11471;11472 11470 7 GDEIECMVLAVDVEK Oxidation (M) 1721.7852 0.78518771 1095 Karp_00244 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 58.258 58.551 2 1.3894E-08 24106 20181213_JW_Orientia_Karp_1_3 180.24 128.52 65159000 14206000 16580000 19240000 4812400 5181500 5098400 41171 0 2896 1095 2537 17541;17542;17543;17544;17545;17546;17547;17548 11473;11474;11475;11476;11477;11478;11479 11475 615 7 GDEIECMVLAVDVEK Unmodified 1705.7903 0.79027308 1095 Karp_00244 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 68.565 68.767 2 9.6557E-14 30420 20181213_JW_Orientia_Karp_1_3 208.27 147.03 78843000 25336000 2403900 19049000 5237700 8942700 4231900 8758500 4883900 2897 1095 2537 17549;17550;17551;17552;17553;17554;17555;17556;17557 11480;11481;11482;11483;11484;11485;11486;11487;11488;11489 11482 10 GDFDVSVPK Unmodified 962.47091 0.4709115 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 46.879 47.113 2 0.0018792 16879 20181213_JW_Orientia_Karp_1_2 119.21 61.043 52444000 9307800 18172000 13307000 4151200 3062000 4445000 0 0 2898 1782 2538 17558;17559;17560;17561;17562;17563 11490;11491;11492 11490 3 GDIEEAIK Unmodified 873.44436 0.4443624 1346 Karp_01522 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 36.511 36.833 2 0.0041872 10829 20181213_JW_Orientia_Karp_2_3 141.52 40.191 119770000 41440000 44894000 19124000 2491400 4170700 1877400 5769000 0 2899 1346 2539 17564;17565;17566;17567;17568;17569;17570;17571 11493;11494;11495;11496;11497;11498 11496 6 GDIINVIDSNLNNNNITSTNDIQTQQLQIPTLIR Deamidation (NQ) 3792.9494 0.94937458 1417 Karp_02254 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 75.694 75.704 3 0.00039415 28384 20181213_JW_Orientia_Karp_3_1 70.788 52.666 40954000 17086000 3394700 8832200 0 0 3077900 8563300 0 2900 1417 2540 17572;17573;17574;17575;17576 11499;11500 11500 937;938;939;940;1877 2 GDIISLVEK Unmodified 972.54916 0.54916182 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.18 55.447 2 0.00040944 20413 20181213_JW_Orientia_Karp_2_2 160.11 73.273 255180000 66553000 55324000 49049000 5177500 29854000 49227000 0 0 2901 1270 2541 17577;17578;17579;17580;17581;17582 11501;11502;11503;11504;11505;11506 11505 6 GDINIEGPSMNIEGPDLNVEGPEGGLK Oxidation (M);Deamidation (NQ) 2767.2858 0.28581943 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 1 1 0 By MS/MS 1 64.34 64.34 3 0.0010724 28389 20181213_JW_Orientia_Karp_1_1 111.33 74.047 0 0 0 0 0 0 0 0 0 2902 1782 2542 17583 11507 11507 1157 1393 1 GDINIEGPSMNIEGPDLNVEGPEGGLK Unmodified 2750.3069 0.30688923 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 69.595 69.719 3 5.21E-11 31126 20181213_JW_Orientia_Karp_1_3 141.29 111.82 38221000 0 9240900 28980000 0 0 0 0 0 2903 1782 2542 17584;17585 11508;11509 11509 2 GDITPLK Unmodified 742.4225 0.42250475 1297 Karp_01188 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 34.634 34.992 2 0.011563 9879 20181213_JW_Orientia_Karp_2_3 119.56 40.941 1004100000 408800000 199930000 128860000 70229000 62344000 12234000 74395000 47295000 2904 1297 2543 17586;17587;17588;17589;17590;17591;17592;17593 11510;11511;11512;11513;11514 11513 5 GDLDIAGPNLEGDFK Unmodified 1559.7468 0.74675201 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 61.898 62.175 2 4.6885E-06 26393 20181213_JW_Orientia_Karp_1_3 170 109.61 80726000 16209000 0 31048000 0 19701000 10164000 692380 2912300 2905 1782 2544 17594;17595;17596;17597;17598;17599;17600 11515;11516;11517;11518;11519;11520 11516 6 GDLGIEIPAEK Unmodified 1140.6027 0.60265396 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;A0A024R609;Q504U3;B4DPM0;Q16716;Q16715;P30613-2;P30613 HEL-S-30;PKM;PKM2;PKLR Pyruvate kinase;Pyruvate kinase PKM;Pyruvate kinase PKLR yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 1 53.656 53.951 2 0.0031978 19893 20181213_JW_Orientia_Karp_2_3 112.85 52.915 424500000 244540000 0 72830000 31360000 25321000 49022000 0 1427000 2906 1597 2545 17601;17602;17603;17604;17605;17606;17607;17608;17609 11521;11522;11523;11524;11525;11526 11526 6 GDLPFVVPR Unmodified 998.55492 0.5549159 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.268 59.528 2 0.0008195 21451 20181213_JW_Orientia_Karp_3_2 134.81 52.139 245680000 84231000 28996000 67406000 0 21635000 39238000 0 4173400 2907 47 2546 17610;17611;17612;17613;17614;17615 11527;11528;11529;11530;11531;11532 11532 6 GDMDISLPK Oxidation (M) 990.4692 0.46919694 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By MS/MS By matching By MS/MS 1 1 2 1 1 42.412 42.67 2 0.0014562 14041 20181213_JW_Orientia_Karp_1_3 121.05 13.153 72938000 21335000 17651000 22933000 0 3661800 0 7357300 0 2908 1782 2547 17616;17617;17618;17619;17620;17621 11533;11534 11533 1394 2 GDMDVSLPK Oxidation (M) 976.45355 0.45354688 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 37.332 37.602 2 0.0068261 10934 20181213_JW_Orientia_Karp_2_1 97.635 21.897 49958000 22502000 11647000 12115000 2189000 1504900 0 0 0 2909 1782 2548 17622;17623;17624;17625;17626 11535 11535 1395 1 GDMDVSVPK Oxidation (M) 962.4379 0.43789681 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 31.47 31.804 2 0.010893 8777 20181213_JW_Orientia_Karp_1_2 88.37 35.733 21798000 4659300 8868500 4018500 1619100 0 525090 2107800 0 2910 1782 2549 17627;17628;17629;17630;17631;17632 11536;11537;11538;11539 11537 1396 4 GDNKFENDECQQFENILNELK Unmodified 2583.1547 0.15474568 1348 Karp_01524 yes yes 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 68.043 68.246 3 0.016875 26674 20181213_JW_Orientia_Karp_3_2 76.417 45.059 15081000 3476600 0 0 0 0 3361100 4295000 3948400 2911 1348 2550 17633;17634;17635;17636 11540 11540 1 GDPAFALLEVLDPEQNSR Unmodified 1969.9745 0.97452012 1190 Karp_00705 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 76.417 76.41 2 2.6275E-23 35888 20181213_JW_Orientia_Karp_1_1 214.47 158.33 185620000 30698000 42895000 55553000 9120800 13539000 5494700 28315000 0 2912 1190 2551 17637;17638;17639;17640;17641;17642;17643 11541;11542;11543;11544;11545 11541 5 GDPAFALLEVLDPEQNSR Deamidation (NQ) 1970.9585 0.9585357 1190 Karp_00705 yes yes 0 1 0 0 By MS/MS By matching 1 1 77.685 77.661 3 0.0073664 36660 20181213_JW_Orientia_Karp_1_1 97.291 61.184 8470300 5824300 0 0 0 2646000 0 0 0 2913 1190 2551 17644;17645 11546 11546 600 1 GDPNWFMK Oxidation (M) 1009.4328 0.43275186 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9;Q59FA5 TAGLN Transgelin yes no 0 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 44.4 44.673 2 0.011082 14712 20181213_JW_Orientia_Karp_2_1 98.458 58.795 59528000 11648000 17471000 15695000 4813300 4141600 5563600 0 195420 2914 1761 2552 17646;17647;17648;17649;17650;17651;17652 11547 11547 1377 1 GDQMVVLEESGEWWK Oxidation (M);Deamidation (NQ) 1808.7927 0.79271593 358 A8K4G3;H0Y3C5;J3KPD6;P08631-3;P08631-2;P08631-4;P08631 HCK Non-specific protein-tyrosine kinase;Tyrosine-protein kinase HCK yes no 0 1 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 3 3 2 3 2 2 1 50.741 51.059 2 0.0203 18712 20181213_JW_Orientia_Karp_1_3 99.788 40.523 2552100000 557210000 55273000 483290000 451990000 449760000 11475000 436320000 106830000 2915 358 2553 17653;17654;17655;17656;17657;17658;17659;17660;17661;17662;17663;17664;17665;17666;17667;17668;17669;17670 11548;11549;11550;11551;11552 11550 1408 249 5 GDQPCNISYLDR Unmodified 1436.6354 0.63542742 1454 Karp_02591 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 44.729 44.896 2 0.011055 15656 20181213_JW_Orientia_Karp_1_2 96.067 62.877 48542000 22150000 22640000 0 0 3752400 0 0 0 2916 1454 2554 17671;17672;17673;17674;17675 11553;11554;11555 11553 3 GDSPASSKPISINYR Unmodified 1590.8002 0.80018457 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.126 37.416 3 0.011555 11519 20181213_JW_Orientia_Karp_1_2 110.25 86.655 315540000 117430000 71008000 68924000 0 10240000 0 47939000 0 2917 85 2556 17676;17677;17678;17679;17680 11556;11557;11558;11559 11556 4 GDSVIVVLR Unmodified 956.56548 0.56548059 1733;1050 K7EJB5;P62316;P62316-2 SNRPD2 Small nuclear ribonucleoprotein Sm D2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 52.179 52.439 2 0.00076705 18849 20181213_JW_Orientia_Karp_2_2 149.65 57.183 52789000 22513000 7176100 0 11465000 3057300 8577400 0 0 2918 1050;1733 2557 17681;17682;17683;17684;17685 11560;11561;11562;11563;11564 11563 5 GDTIVYTK Unmodified 895.4651 0.46509784 1297 Karp_01188 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 31.924 32.297 2 0.0041562 8288 20181213_JW_Orientia_Karp_2_1 147.29 54.818 176510000 47823000 79985000 23575000 4964200 8120300 0 8451800 3594000 2919 1297 2558 17686;17687;17688;17689;17690;17691;17692;17693 11565;11566;11567;11568;11569;11570;11571;11572 11568 8 GDTQSLATITLGSSTDEQIVEQLNK Unmodified 2647.3188 0.31883412 1127 Karp_00330 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 69.347 69.498 2;3 2.4518E-21 28085 20181213_JW_Orientia_Karp_2_1 192.16 147.09 203610000 47824000 35619000 40988000 5610500 17432000 9268900 33967000 12905000 2920 1127 2559 17694;17695;17696;17697;17698;17699;17700;17701;17702;17703;17704;17705;17706;17707;17708 11573;11574;11575;11576;11577;11578;11579;11580;11581;11582;11583;11584 11578 12 GDTTNTVLQGLK Unmodified 1245.6565 0.65648044 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.325 46.652 2 0.0006786 17000 20181213_JW_Orientia_Karp_1_1 143.96 59.346 28006000 7006300 8143500 8677200 0 0 2271400 192180 1715600 2921 852 2560 17709;17710;17711;17712;17713;17714 11585;11586;11587 11585 3 GDVAFVK Unmodified 734.39629 0.39629 808;578 B4DI57;Q53H26;Q06AH7;P02787;B4E1B2;B4DHZ6;H7C5E8;CON__Q29443;CON__Q0IIK2;CON__Q2HJF0 TF Serotransferrin no no 0 0 0 0 By MS/MS 1 36.252 36.252 2 0.012698 11464 20181213_JW_Orientia_Karp_1_1 132.72 48.359 9907400 9907400 0 0 0 0 0 0 0 + 2922 578;808 2561 17715 11588 11588 1 GDVDISLPK Unmodified 942.50221 0.50221163 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 48.202 48.504 2 0.029585 15724 20181213_JW_Orientia_Karp_3_2 78.264 12.798 276790000 49952000 64991000 48146000 51270000 14690000 41504000 0 6232100 2923 1782 2562 17716;17717;17718;17719;17720;17721;17722 11589 11589 1 GDVDVSLPEVEGEMK Oxidation (M) 1618.7396 0.73961772 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 53.467 53.77 2 0.00061145 19513 20181213_JW_Orientia_Karp_2_2 136.53 67.52 46231000 17437000 19478000 0 0 8582000 0 0 733720 2924 1782 2563 17723;17724;17725;17726 11590;11591 11591 1397 2 GDVDVSLPEVEGEMK Unmodified 1602.7447 0.7447031 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 58.567 58.868 2 0.017714 24902 20181213_JW_Orientia_Karp_1_1 86.814 33.603 32072000 22290000 9206700 0 0 0 0 575470 0 2925 1782 2563 17727;17728;17729 11592 11592 1 GDVDVSLPK Unmodified 928.48656 0.48656157 1782 Q09666;Q6ZQN2;Q8N274;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.498 43.791 2 0.0010372 14211 20181213_JW_Orientia_Karp_2_1 131.22 56.179 256800000 98459000 84523000 24101000 6091800 29618000 6018300 7986900 0 2926 1782 2564 17730;17731;17732;17733;17734;17735;17736 11593;11594;11595;11596;11597 11595 5 GDVDVTLPK Unmodified 942.50221 0.50221163 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.042 44.333 2 0.0010372 15705 20181213_JW_Orientia_Karp_1_1 131.22 14.972 44240000 22320000 11295000 7096900 0 0 1111900 2415700 0 2927 1782 2565 17737;17738;17739;17740;17741;17742 11598;11599;11600;11601;11602;11603 11598 6 GDVIIYPLPHMSVIK Unmodified 1680.9273 0.92729933 1426 Karp_02372 yes yes 0 0 0 0 By MS/MS 1 62.405 62.405 3 0.027137 27196 20181213_JW_Orientia_Karp_1_1 56.482 27.506 8799400 8799400 0 0 0 0 0 0 0 2928 1426 2566 17743 11604 11604 1 GDVPSVGLEGPDVDLQGPEAK Unmodified 2078.0168 0.016778861 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 61.811 62.073 2 5.6887E-12 26358 20181213_JW_Orientia_Karp_1_3 174.4 138.69 144780000 39232000 28260000 61167000 0 8987100 0 0 7134400 2929 1782 2567 17744;17745;17746;17747;17748 11605;11606;11607;11608 11607 4 GDVTAEEAAGASPAK Unmodified 1372.647 0.64703797 1682 P49006 MARCKSL1 MARCKS-related protein yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 32.089 32.423 2 0.018776 9026 20181213_JW_Orientia_Karp_1_3 85.973 51.887 15194000 3304800 5751200 3004800 1360100 1193500 0 579140 0 2930 1682 2568 17749;17750;17751;17752;17753;17754 11609 11609 1 GDVTITNDGATILK Unmodified 1416.746 0.74602373 349 B7Z9L0;B7Z2Z8;A8K3C3;P50991 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 1 1 1 51.093 51.313 2 0.00094142 19975 20181213_JW_Orientia_Karp_1_1 136.93 65.319 78135000 19797000 26047000 25851000 0 2417500 3344900 0 677310 2931 349 2569 17755;17756;17757;17758;17759;17760;17761;17762 11610;11611;11612;11613 11610 4 GDVVVSLPK Unmodified 912.52803 0.52803245 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 46.622 46.923 2 0.0020069 17153 20181213_JW_Orientia_Karp_1_1 118.5 42.274 55444000 18394000 24650000 8059300 3732200 0 0 0 608190 2932 1782 2570 17763;17764;17765;17766;17767 11614;11615;11616 11614 3 GDYDAFFEAR Unmodified 1189.504 0.50400254 1519 V9HW48;O75368;B0AZV6;D3DTE6 HEL-S-115;SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 56.86 57.127 2 0.020344 21380 20181213_JW_Orientia_Karp_2_2 83.869 26.01 28985000 5720800 2307700 9577300 2426500 4358800 4593700 0 0 2933 1519 2571 17768;17769;17770;17771;17772;17773 11617 11617 1 GDYDVTVPK Unmodified 992.48148 0.48147619 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 40.274 40.634 2 0.0042694 13194 20181213_JW_Orientia_Karp_1_3 107.69 47.399 38184000 0 20326000 12249000 2016100 2112900 0 1479100 0 2934 1782 2572 17774;17775;17776;17777;17778 11618;11619;11620 11619 3 GDYLNLALGK Unmodified 1062.571 0.5709599 1227 Karp_00894 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 56.773 56.983 2 1.1013E-06 21285 20181213_JW_Orientia_Karp_2_2 186.16 113.28 126660000 42943000 30628000 28708000 0 8947800 15429000 0 0 2935 1227 2573 17779;17780;17781;17782;17783 11621;11622;11623;11624 11623 4 GDYPLEAVR Unmodified 1018.5084 0.50835964 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.872 45.055 2 0.00078977 16122 20181213_JW_Orientia_Karp_1_1 143.73 70.118 283950000 87098000 120030000 76825000 0 0 0 0 0 2936 1597 2574 17784;17785;17786;17787;17788;17789 11625;11626;11627;11628;11629;11630 11625 6 GDYQDAFTIETNPAHNEGIIK Unmodified 2332.0972 0.097154447 640 B4DU18;Q59EA3;P33151;I3L1J2;B4DTP0;Q4VAI4;P33151-2 CDH5 Cadherin-5 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 54.717 54.9 3 0.0019444 22499 20181213_JW_Orientia_Karp_1_1 93.768 59.674 70271000 19162000 13488000 37620000 0 0 0 0 0 2937 640 2575 17790;17791;17792 11631 11631 1 GEAAAERPGEAAVASSPSK Unmodified 1783.8701 0.87005504 1642 P29966;Q6NVI1;Q05C82 MARCKS Myristoylated alanine-rich C-kinase substrate yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 27.186 27.543 3 8.5644E-07 6298 20181213_JW_Orientia_Karp_3_1 150.9 120.91 177080000 15627000 84214000 19123000 8459300 11514000 4000900 22363000 11777000 2938 1642 2576 17793;17794;17795;17796;17797;17798;17799;17800 11632;11633;11634;11635;11636;11637;11638;11639 11638 8 GEAEAFAIGAR Unmodified 1090.5407 0.5407224 289 A2VCL5;Q6IB58;Q5ST80;Q53HQ0;O75955-2;O75955 FLOT1 Flotillin-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 2 44.608 44.795 2 0.026543 15661 20181213_JW_Orientia_Karp_1_2 81.525 42.771 28212000 9758700 9869800 8583200 0 0 0 0 0 2939 289 2577 17801;17802;17803;17804 11640;11641 11640 1 GEAGAAGPAGPAGPR Unmodified 1234.6054 0.60544792 1569 P08123 COL1A2 Collagen alpha-2(I) chain yes yes 0 0 0 0 By MS/MS By matching 1 1 27.854 28.18 2 0.002546 7612 20181213_JW_Orientia_Karp_1_1 135.8 77.549 7544200 6999900 0 0 0 0 0 544360 0 2940 1569 2578 17805;17806 11642 11642 1 GEAGPQGPR Unmodified 867.41988 0.41987898 1542 P02452;Q6LAN8;H9C5C5;Q9UMA6;T1RTD8 COL1A1 Collagen alpha-1(I) chain yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 18.646 18.88 2 0.034841 3589 20181213_JW_Orientia_Karp_1_1 75.043 9.5779 4914500 4502800 0 0 330890 0 0 80768 0 2941 1542 2579 17807;17808;17809 11643 11643 1 GEATVSFDDPPSAK Unmodified 1419.6518 0.65178899 359;1884 Q59H57;B4DR70;A8K4H1;Q8TBR3;Q6IBQ5;H3BPE7;Q13344;P35637-2;P35637;B4E312;A0A075B7D9;Q92804-2;Q92804;Q70T18 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 42.883 43.213 2 0.0012041 13932 20181213_JW_Orientia_Karp_2_1 133.05 90.332 61769000 15435000 16742000 8267200 9171200 3191300 0 6648100 2315100 2942 359;1884 2580 17810;17811;17812;17813;17814;17815;17816 11644;11645;11646;11647;11648 11647 5 GEDIQASTVSHLHSEDSAHGK Unmodified 2204.0094 0.0094020725 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 28.22 28.582 4 0.039406 7776 20181213_JW_Orientia_Karp_1_1 45.357 24.351 56870000 21130000 0 21555000 0 5077400 0 5968800 3139100 2943 1193 2581 17817;17818;17819;17820;17821 11649 11649 1 GEDSEQQSNDQSLVVNGVK Deamidation (NQ) 2032.9185 0.91852138 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1 2 2 1 43.961 44.261 2 0 14651 20181213_JW_Orientia_Karp_1_2 448.76 355.14 679090000 179430000 212830000 167890000 19190000 20185000 15745000 60719000 3097100 2944 1107 2582 17822;17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836 11650;11651;11652;11653;11654;11655;11656;11657;11658;11659;11660;11661;11662 11652 463;464;1802;1803;1804 13 GEDSEQQSNDQSLVVNGVK 2 Deamidation (NQ) 2033.9025 0.90253696 1107 Karp_00285 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 3 46.796 47.091 2 0 16605 20181213_JW_Orientia_Karp_1_1 482.15 391.33 184330000 43168000 49296000 36325000 9156300 6397700 13750000 11805000 14436000 2945 1107 2582 17837;17838;17839;17840;17841;17842;17843;17844;17845;17846;17847;17848;17849;17850;17851 11663;11664;11665;11666;11667;11668;11669;11670;11671;11672;11673;11674 11663 463;464;1802;1803;1804 11 GEDSEQQSNDQSLVVNGVKFVDLTPDLVK Deamidation (NQ) 3160.5412 0.5411825 1107 Karp_00285 yes yes 0 1 0 1 By MS/MS By MS/MS By matching 1 1 1 71.751 71.903 3 2.5811E-09 32845 20181213_JW_Orientia_Karp_1_2 131.5 99.13 20407000 0 10774000 8098400 0 0 0 0 1533800 2946 1107 2583 17852;17853;17854 11675;11676 11675 463;464;1802;1803;1804 2 GEDVPLTEQTVSQVLQSAK Unmodified 2028.0375 0.037514303 215 Q53FU3;A0A024RB72;F8VVA7;P61923;P61923-4;F8VYK5;F8W651;P61923-2;P61923-3 COPZ1 Coatomer subunit zeta-1 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 65.243 65.443 2 1.3496E-09 28298 20181213_JW_Orientia_Karp_1_3 190.19 141.96 30020000 8156200 8883800 9594200 0 0 0 3386100 0 2947 215 2584 17855;17856;17857;17858 11677 11677 1 GEELLSPLNLEQAAYAR Unmodified 1872.9581 0.95814177 1488 O00159;D3DTH7;F5H6E2;B7Z3E5;O00159-2;O00159-3;B7Z9C0 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 68.268 68.482 2 6.3944E-05 30266 20181213_JW_Orientia_Karp_1_3 145.71 96.077 37388000 15619000 6045700 12126000 0 0 0 0 3597700 2948 1488 2585 17859;17860;17861;17862 11678;11679 11679 2 GEELSCEER Unmodified 1107.4503 0.45025241 1651 P31947-2;P31947 SFN 14-3-3 protein sigma yes no 0 0 0 0 By MS/MS 1 24.889 24.889 2 0.00070588 6066 20181213_JW_Orientia_Karp_1_1 151.44 85.142 11639000 11639000 0 0 0 0 0 0 0 2949 1651 2586 17863 11680 11680 1 GEETGIDVTLPTGEVTVPGVSGDVSLPEIATGGLEGK Unmodified 3579.8043 0.80433305 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 75.448 75.46 3 3.7909E-06 28282 20181213_JW_Orientia_Karp_3_1 74.494 54.802 51206000 0 6248000 14981000 0 12843000 0 17133000 0 2950 1782 2587 17864;17865;17866;17867 11681;11682 11682 2 GEFINPTYLDVEVK Unmodified 1622.8192 0.81918867 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 64.898 65.113 2 2.9992E-25 28781 20181213_JW_Orientia_Karp_1_1 232.78 139.33 561690000 143690000 196690000 101450000 0 46099000 34261000 8007700 31498000 2951 1380 2588 17868;17869;17870;17871;17872;17873;17874 11683;11684;11685;11686 11683 4 GEGAGQPSTSAQGQPAAPAPQK Unmodified 2033.9766 0.97664538 929 F5H2U8;F5H2A4;P52926;F6LHU9;Q1M183;F5H6H0;P52926-3;P52926-6;P52926-4;P52926-5;P52926-2 HMGA2 High mobility group protein HMGI-C yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 2 1 2 31.006 31.341 2;3 1.5087E-49 8628 20181213_JW_Orientia_Karp_1_2 252.1 179.02 185190000 83207000 19686000 61326000 2938300 2186700 3953900 4664100 7231500 2952 929 2589 17875;17876;17877;17878;17879;17880;17881;17882;17883;17884;17885;17886 11687;11688;11689;11690;11691;11692;11693;11694 11688 8 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR Unmodified 4212.0975 0.097495383 2000 Q9UK76-3;Q9UK76 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed yes no 0 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 60.322 60.624 4 0.0079501 22161 20181213_JW_Orientia_Karp_3_2 41.017 26.721 70304000 12032000 6764500 0 17835000 13613000 14800000 0 5259000 2953 2000 2590 17887;17888;17889;17890;17891;17892 11695;11696 11696 2 GEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAK Deamidation (NQ) 3177.4222 0.42218957 1682 P49006 MARCKSL1 MARCKS-related protein yes yes 0 1 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 50.882 51.189 3 1.4615E-13 17873 20181213_JW_Orientia_Karp_2_1 119.33 75.076 178990000 48982000 25615000 40028000 18401000 18917000 14315000 12728000 0 2954 1682 2591 17893;17894;17895;17896;17897;17898;17899;17900;17901;17902;17903;17904;17905;17906 11697;11698;11699;11700;11701;11702;11703;11704 11699 1123 8 GEGEYYIEDCEADFIR Unmodified 1964.8098 0.80982255 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 61.059 61.389 2 1.3779E-37 25889 20181213_JW_Orientia_Karp_1_3 245.69 209.4 68882000 18846000 15325000 21948000 4238900 5512100 0 503890 2508200 2955 1251 2592 17907;17908;17909;17910;17911;17912;17913 11705;11706;11707;11708 11708 4 GEGGTTNPHIFPEGSEPK Unmodified 1852.8592 0.85915601 616;671 F5GYN4;Q659F9;J3KR44;B4DPD5;Q96FW1;F5H6Q1;F5H3F0;B3KUV5;Q96FW1-2;B4E053 OTUB1;DKFZp564E242 Ubiquitin thioesterase OTUB1 no no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 38.549 38.82 3 0.041078 12146 20181213_JW_Orientia_Karp_1_3 57.499 32.18 29446000 10395000 10773000 6175000 0 283230 0 1820400 0 2956 616;671 2593 17914;17915;17916;17917;17918 11709 11709 1 GEGGYLVNSEGER Unmodified 1365.6161 0.61607219 1427 Karp_02373 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 36.205 36.567 2 0.040631 11058 20181213_JW_Orientia_Karp_1_2 94.767 52.169 31853000 1934000 12118000 15610000 0 0 0 1464600 726250 2957 1427 2594 17919;17920;17921;17922;17923 11710 11710 0 GEGPDVDVNLPK Unmodified 1238.6143 0.61428128 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.182 48.527 2 2.483E-05 15692 20181213_JW_Orientia_Karp_3_2 173.64 80.479 1065900000 308810000 334010000 143400000 119370000 36635000 62375000 814540 60448000 2958 1782 2595 17924;17925;17926;17927;17928;17929;17930;17931 11711;11712;11713;11714;11715;11716;11717;11718;11719 11718 9 GEGPDVDVTLPK Unmodified 1225.619 0.6190323 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 49.974 50.291 2 0.0022009 19334 20181213_JW_Orientia_Karp_1_1 119.27 63.813 188980000 56193000 43788000 54441000 24684000 9774100 0 95088 0 2959 1782 2596 17932;17933;17934;17935;17936;17937 11720;11721 11720 2 GEGPEFDVNLSK Unmodified 1290.6092 0.6091959 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 50.188 50.538 2 3.9391E-05 19079 20181213_JW_Orientia_Karp_1_2 169.82 112.6 132350000 33424000 32930000 26839000 37995000 0 0 1159600 0 2960 1782 2597 17938;17939;17940;17941;17942;17943 11722;11723;11724;11725 11723 4 GEGPEVDVNLPK Unmodified 1252.6299 0.62993134 1782 Q09666;Q6ZQN2;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.491 48.836 2 6.46E-06 16749 20181213_JW_Orientia_Karp_2_2 178.46 105.58 1071000000 252190000 307380000 125100000 148920000 54487000 61189000 427060 121340000 2961 1782 2598 17944;17945;17946;17947;17948;17949;17950;17951 11726;11727;11728;11729;11730;11731;11732 11730 7 GEGPEVDVTLPK Unmodified 1239.6347 0.63468237 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 50.277 50.585 2 4.3177E-05 19538 20181213_JW_Orientia_Karp_1_1 169.99 75.584 192400000 43330000 44579000 36111000 30912000 10804000 24555000 2109600 0 2962 1782 2599 17952;17953;17954;17955;17956;17957;17958;17959 11733;11734;11735;11736;11737;11738;11739 11733 7 GEHPGLSIGDVAK Unmodified 1278.6568 0.65681479 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 38.776 39.046 3 0.00029041 11348 20181213_JW_Orientia_Karp_2_2 154.67 96.887 97584000 52919000 10511000 8751400 0 21142000 0 4259900 0 2963 264 2600 17960;17961;17962;17963;17964 11740;11741 11741 2 GEIDASVPELEGDLR Unmodified 1598.7788 0.77878042 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.795 60.088 2 0.00046207 20811 20181213_JW_Orientia_Karp_3_1 142.1 94.006 124480000 42664000 22459000 24634000 7090200 13904000 10750000 2976800 0 2964 1782 2601 17965;17966;17967;17968;17969;17970;17971 11742;11743;11744;11745;11746;11747;11748;11749 11748 8 GEIYFTQSAINVER Unmodified 1625.8049 0.80493559 1180 Karp_00655 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.324 55.639 2 2.5932E-18 22461 20181213_JW_Orientia_Karp_1_2 224.25 145.31 72115000 18534000 14098000 21631000 3602200 6920700 6839700 0 490060 2965 1180 2602 17972;17973;17974;17975;17976;17977;17978 11750;11751;11752;11753;11754;11755;11756;11757;11758 11751 9 GELANEVK Unmodified 858.4447 0.44469675 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 26.059 26.437 2 0.0092127 5286 20181213_JW_Orientia_Karp_2_2 106.36 31.143 22984000 0 0 11191000 0 4697000 2508300 0 4587600 2966 47 2603 17979;17980;17981;17982;17983 11759;11760;11761 11761 3 GELYLNTDNSQLFDNMK Unmodified 2000.915 0.91495633 1112 Karp_00294 yes yes 0 0 0 0 By MS/MS 1 63.449 63.449 2 0.04132 27811 20181213_JW_Orientia_Karp_1_1 69.352 21.076 7004600 7004600 0 0 0 0 0 0 0 2967 1112 2604 17984 11762 11762 1 GENLVSMTVEGPPPK Oxidation (M) 1569.7709 0.77085827 648 J3QLE5;Q6LBS1;Q66K91;Q5XPV6;B4DVS0;X5DP00;Q53HE7;Q9UIS4;Q15182;P14678-2;P63162;P14678;P63162-2;P14678-3 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated protein;Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 2 1 43.742 44.076 2 0.0067449 14223 20181213_JW_Orientia_Karp_2_2 114.87 66.127 24455000 0 0 21733000 0 1267300 0 1454600 0 2968 648 2605 17985;17986;17987;17988 11763;11764 11764 401 2 GENMEVQTYLER Oxidation (M) 1483.6613 0.66130782 1457 Karp_02594 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 43.092 43.267 2 4.142E-11 14662 20181213_JW_Orientia_Karp_1_2 196.16 138.61 32508000 11928000 10769000 6782300 0 3027900 0 0 0 2969 1457 2606 17989;17990;17991;17992 11765;11766;11767 11766 1071 3 GEPAAAAAPEAGASPVEK Unmodified 1621.7948 0.79476484 1642 P29966;Q6NVI1 MARCKS Myristoylated alanine-rich C-kinase substrate yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 37.447 37.806 2 9.5248E-10 11101 20181213_JW_Orientia_Karp_2_1 178.67 143.9 168820000 27650000 59061000 31023000 12179000 0 6106000 25548000 7249500 2970 1642 2607 17993;17994;17995;17996;17997;17998;17999;18000;18001;18002 11768;11769;11770;11771;11772;11773;11774;11775;11776;11777 11771 10 GEQGFMGNTGPTGAVGDR Oxidation (M) 1765.769 0.76896079 265 A0A024RDW8;P08572;B4DH43 COL4A2 Collagen alpha-2(IV) chain;Canstatin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 37.83 38.18 2 3.9427E-68 11888 20181213_JW_Orientia_Karp_1_2 278.62 215.99 20652000 5472400 3054200 7193300 1679700 0 0 3252300 0 2971 265 2608 18003;18004;18005;18006;18007;18008 11778;11779;11780;11781;11782 11779 187 5 GESGPSGPAGPTGAR Unmodified 1296.6058 0.60584185 1542 P02452;D3DTX7;Q6LAN8;H9C5C5 COL1A1 Collagen alpha-1(I) chain yes no 0 0 0 0 By MS/MS 1 26.512 26.512 2 1.4298E-08 6872 20181213_JW_Orientia_Karp_1_1 182.41 121.58 23137000 23137000 0 0 0 0 0 0 0 2972 1542 2609 18009 11783 11783 1 GETFQDLCVR Unmodified 1223.5605 0.56047157 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.836 47.156 2 7.1906E-06 17247 20181213_JW_Orientia_Karp_1_1 166.34 101.09 178600000 63773000 44321000 25391000 10838000 8629900 9632200 556220 15460000 2973 1133 2610 18010;18011;18012;18013;18014;18015;18016;18017 11784;11785;11786;11787;11788;11789;11790;11791 11784 8 GETGPSGPVGPAGAVGPR Unmodified 1561.7849 0.78486885 1569 P08123 COL1A2 Collagen alpha-2(I) chain yes yes 0 0 0 0 By MS/MS 1 41.646 41.646 2 0.0093183 14243 20181213_JW_Orientia_Karp_1_1 92.792 56.264 16536000 16536000 0 0 0 0 0 0 0 2974 1569 2611 18018 11792 11792 1 GETISDEIIQQIYGEK Unmodified 1821.8996 0.89962384 1444 Karp_02422 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 2 1 70.322 70.473 2;3 0.00051569 32079 20181213_JW_Orientia_Karp_1_1 134.61 85.666 35195000 7767500 0 0 0 6346800 5845800 10610000 4624700 2975 1444 2612 18019;18020;18021;18022;18023;18024;18025 11793;11794;11795 11793 3 GEVDVSLANVEGDLK Unmodified 1543.773 0.77296676 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.256 59.549 2 3.416E-05 22648 20181213_JW_Orientia_Karp_2_2 160.18 109.71 135200000 31080000 39791000 29532000 6984600 13897000 12898000 1017700 0 2976 1782 2613 18026;18027;18028;18029;18030;18031;18032 11796;11797;11798;11799;11800;11801;11802 11800 7 GEVLGDVLQLETLK Unmodified 1512.8399 0.83992412 118 A0A024R5M9;Q4LE64;Q14980-2;Q14980;Q14980-4;Q14980-3;A0A024R5G4;F5H4J1;A8K394;Q3SYK8;F5H6Y5 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 69.952 70.035 2 0.023759 31847 20181213_JW_Orientia_Karp_1_1 82.85 37.022 10507000 5467700 3068700 1970500 0 0 0 0 0 2977 118 2614 18033;18034;18035 11803 11803 1 GEVVSSTFDEPAVR Unmodified 1491.7205 0.72053726 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.465 47.81 2 8.7666E-18 16198 20181213_JW_Orientia_Karp_2_2 220.5 157.07 518390000 95351000 168780000 109060000 53366000 31131000 27463000 5003700 28237000 2978 1333 2615 18036;18037;18038;18039;18040;18041;18042;18043 11804;11805;11806;11807;11808;11809;11810;11811 11808 8 GEWTCIAYSQLR Unmodified 1482.6925 0.69254837 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 55.186 55.554 2 2.4548E-07 22086 20181213_JW_Orientia_Karp_1_3 223.31 155.3 89282000 0 25342000 39000000 4278700 11125000 6806700 0 2730100 2979 85 2616 18044;18045;18046;18047;18048;18049 11812;11813;11814 11813 3 GEYDVTVPK Unmodified 1006.4971 0.49712625 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 40.694 41.054 2 0.011765 13395 20181213_JW_Orientia_Karp_1_2 90.601 37.815 13278000 0 7469600 3464400 1176800 687270 0 479550 0 2980 1782 2617 18050;18051;18052;18053;18054 11815 11815 1 GFAFVQYVNER Unmodified 1328.6513 0.65133548 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575;B4DMJ1;B4DSU6;G3V4M8;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 57.761 58.119 2 0.00012857 20582 20181213_JW_Orientia_Karp_3_2 159.34 117.94 196680000 40068000 42719000 54205000 27118000 0 22487000 146530 9931800 2981 400;452 2618 18055;18056;18057;18058;18059;18060;18061 11816;11817;11818;11819;11820;11821 11821 6 GFAFVQYVNER Deamidation (NQ) 1329.6354 0.63535107 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575;B4DMJ1;B4DSU6;G3V4M8;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 60.339 60.666 2 0.0020318 25782 20181213_JW_Orientia_Karp_1_2 127.76 77.292 22393000 0 10198000 8313500 0 0 2749600 0 1132100 2982 400;452 2618 18062;18063;18064;18065;18066 11822;11823;11824;11825 11822 150 4 GFAFVTFDDHDSVDK Unmodified 1698.7526 0.75256567 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q6IPF2;Q0VAC0;F8VZ49;A0A024RC46;H0YH80;A0A024QZ98;Q32P51;F8VTQ5 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 57.837 58.214 2 0.015066 22148 20181213_JW_Orientia_Karp_2_1 89.266 48.539 11786000 0 0 3154900 3837800 0 3463700 0 1329200 2983 209 2619 18067;18068;18069;18070 11826 11826 1 GFAFVTFESPADAK Unmodified 1485.714 0.71399532 1663 P38159;H0Y6E7;H3BT71;H3BR27;B4E352;Q2VIN3;P38159-3;Q96E39;A8K8A6;O75526;Q8N7X1 RBMX;RBMXL1;RBMXL2;RBMXL3 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 65.042 65.272 2 5.4722E-25 28937 20181213_JW_Orientia_Karp_1_1 225.93 146.79 160920000 36891000 0 43310000 7375300 37141000 22954000 6703900 6546900 2984 1663 2620 18071;18072;18073;18074;18075;18076;18077;18078 11827;11828;11829;11830;11831;11832;11833;11834;11835 11827 9 GFCFITFK Unmodified 1018.4946 0.49462383 254 H0YA96;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103-4;Q14103-3;Q14103-2;Q14103;B4E0W4 HNRNPD;HNRPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 By MS/MS 1 62.427 62.937 2 0.036094 23562 20181213_JW_Orientia_Karp_3_2 91.041 45.323 0 0 0 0 0 0 0 0 0 2985 254 2621 18079 11836 11836 1 GFCLGELEQHQEEIENYDLAIK Unmodified 2634.2272 0.22718234 1186 Karp_02088;Karp_00690 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 64.179 64.388 3 0.00093294 28118 20181213_JW_Orientia_Karp_1_2 99.313 71.014 45120000 11646000 16238000 6979400 1376200 0 6040400 0 2840500 2986 1186 2622 18080;18081;18082;18083;18084;18085;18086 11837;11838;11839;11840;11841;11842;11843 11839 7 GFCLGELER Unmodified 1079.507 0.50697943 1340 Karp_01512 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 52.696 52.926 2 0.026905 20604 20181213_JW_Orientia_Karp_1_3 79.906 28.941 32436000 9997400 0 5558500 6148600 3540100 7191300 0 0 2987 1340 2623 18087;18088;18089;18090;18091 11844 11844 1 GFCYVEFDEVDSLK Unmodified 1706.7498 0.74978848 603 Q75MU1;B4DMV6;Q75MU2;Q15056-2;Q15056;A4D198 WBSCR1;EIF4H;LOC392647 Eukaryotic translation initiation factor 4H yes no 0 0 0 0 By matching By MS/MS 1 1 65.79 66.091 2 0.031202 23131 20181213_JW_Orientia_Karp_3_1 77.305 42.613 4098700 0 0 0 0 2136000 0 1962700 0 2988 603 2624 18092;18093 11845 11845 1 GFDEYMK Oxidation (M) 904.36367 0.36366924 871 E7DVW5;Q01469 FABP5 Fatty acid-binding protein, epidermal yes no 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 31.527 31.794 2 0.0152 7644 20181213_JW_Orientia_Karp_2_2 105.2 65.982 47163000 16978000 15579000 4212400 4806300 3366400 2220800 0 0 2989 871 2625 18094;18095;18096;18097;18098;18099 11846;11847;11848 11847 497 3 GFDYLINSLR Unmodified 1196.619 0.61897272 1091 Karp_00232 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 65.856 65.994 2 0.0084804 26080 20181213_JW_Orientia_Karp_2_3 96.143 25.327 15005000 8575000 2116500 0 0 2718400 1595700 0 0 2990 1091 2626 18100;18101;18102;18103 11849;11850 11850 2 GFEGGQTPLIK Unmodified 1145.6081 0.60807369 1224 Karp_00891 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 45.13 45.43 2 0.00015385 15706 20181213_JW_Orientia_Karp_1_3 157.96 114.71 1049700000 426980000 309860000 298640000 0 0 0 14197000 0 2991 1224 2627 18104;18105;18106;18107 11851;11852;11853;11854 11853 4 GFEKPTENSSAVLLQWHEK Unmodified 2199.096 0.096032235 163 B3KPC7;A0A024R897;Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein yes no 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 46.945 47.245 3 0.015459 17108 20181213_JW_Orientia_Karp_1_2 83.849 43.417 32279000 14981000 9112100 6931900 0 0 0 1253500 0 2992 163 2628 18108;18109;18110;18111 11855 11855 1 GFFDPNTEENLTYLQLK Unmodified 2027.984 0.98402217 1601 Q4LE79;P15924-2;P15924-3;P15924 DSP variant protein;DSP Desmoplakin yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 72.077 72.147 2 0.0046423 29189 20181213_JW_Orientia_Karp_2_2 101.72 55.564 50825000 11620000 6267900 2724300 0 12442000 0 17771000 0 2993 1601 2629 18112;18113;18114;18115;18116 11856;11857 11856 2 GFFDPNTHENLTYLQLLER Unmodified 2306.1331 0.13314602 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;A0A075B730;P58107 PLEC;PLEC1;EPPK1 Plectin;Epiplakin yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 70.63 70.766 3 0.00018132 31809 20181213_JW_Orientia_Karp_1_3 118.05 0.51701 33495000 0 0 12822000 0 4957600 1833600 13882000 0 2994 1803 2630 18117;18118;18119;18120 11858;11859 11858 2 GFFDPNTHENLTYR Unmodified 1709.7798 0.77978347 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 48.88 49.207 3 0.036338 18182 20181213_JW_Orientia_Karp_1_2 49.483 22.514 70821000 17719000 22144000 19804000 4765200 0 3575400 0 2813300 2995 1803 2631 18121;18122;18123;18124;18125;18126 11860 11860 1 GFGFGLVK Unmodified 823.45922 0.4592246 21 A0A024QZT0;A0A024QZN9;P45880-2;P45880;P45880-1;Q5JSD2;Q5JSD1;A2A3S1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 55.551 55.764 2 0.03401 20778 20181213_JW_Orientia_Karp_2_3 80.377 57.755 33329000 20122000 2370800 0 0 2542800 8293200 0 0 2996 21 2632 18127;18128;18129;18130 11861 11861 1 GFGFGQGAGALVHSE Unmodified 1432.6735 0.67352749 662 Q9BTA4;B4DY28;Q6ZMS3;P21291;E9PP21;Q6AI18;B3KVC9;Q6AWD1 CSRP1;DKFZp686M148;DKFZp686P2249 Cysteine and glycine-rich protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.58 55.895 2 0.00023587 19490 20181213_JW_Orientia_Karp_3_2 146.71 103.08 334030000 36917000 40949000 60794000 53906000 76202000 58883000 0 6377600 2997 662 2633 18131;18132;18133;18134;18135;18136;18137 11862;11863;11864;11865;11866;11867;11868 11868 7 GFGFILFK Unmodified 927.52182 0.52182486 604 D6R9P3;D6RD18;B4DMY3;D6RBZ0;Q53F64;Q99729-3;Q99729-2;Q99729-4;Q99729 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 70.09 70.234 2 0.005063 32104 20181213_JW_Orientia_Karp_1_1 121.68 71.557 37271000 13237000 0 3693500 94613 10368000 2884400 6673100 320240 2998 604 2634 18138;18139;18140;18141;18142;18143;18144;18145 11869;11870;11871;11872 11869 4 GFGFITFTNPEHASVAMR Oxidation (M) 1996.9465 0.94653123 7 A0A024QYX3;P98179 RBM3 RNA-binding protein 3 yes no 0 0 1 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 57.633 57.883 3 0.021151 21784 20181213_JW_Orientia_Karp_2_2 74.966 48.416 47763000 6560300 6055700 7967700 5680800 12565000 8933800 0 0 2999 7 2635 18146;18147;18148;18149;18150;18151 11873 11873 4 1 GFGFVCFSSPEEATK Unmodified 1661.7396 0.73955814 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E7ERJ7;B4DQX0;H0YAR2;H0YB86;B1ANR0;Q6IQ30;Q4VXU2;Q13310-2;Q13310;Q13310-3;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;Q15164;H0YEU6;Q147Y3;Q3B867;Q59GZ7;Q53GL4;H0Y5F5 PABPC1;PABPC4;PABPC1L;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4;Polyadenylate-binding protein 3 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 62.375 62.662 2 0.023169 26635 20181213_JW_Orientia_Karp_1_3 82.494 39.41 15896000 0 4917200 8048600 884750 0 2045500 0 0 3000 179 2636 18152;18153;18154;18155 11874 11874 1 GFGFVDFNSEEDAK Unmodified 1560.6733 0.67325272 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338;H7BY16;Q9BQ02 NCL Nucleolin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 62.237 62.524 2 1.6639E-17 27248 20181213_JW_Orientia_Karp_1_1 215.72 169.81 63566000 13377000 0 13417000 4495800 13543000 12470000 0 6262800 3001 88 2637 18156;18157;18158;18159;18160;18161;18162 11875;11876;11877;11878;11879;11880;11881 11875 7 GFGFVLFK Unmodified 913.50617 0.5061748 254;258 H0YA96;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103-4;Q14103-3;Q14103-2;Q14103;D6RAF8;D6RF44;D6RBQ9;B4DTA2;A0A024RDF6;O14979-3;O14979-2;O14979 HNRNPD;HNRPD;HNRPDL;HNRNPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 67.544 67.721 2 0.0050318 30073 20181213_JW_Orientia_Karp_1_2 122.15 79.088 92211000 23338000 8977500 22461000 0 19538000 11671000 0 6225100 3002 254;258 2638 18163;18164;18165;18166;18167;18168 11882;11883;11884;11885;11886;11887 11883 6 GFGFVSFER Unmodified 1044.5029 0.50288033 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E7ERJ7;B4DQX0;H0YAR2;H0YAP2;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;A8K8J2 PABPC1;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.375 59.585 2 0.0027611 25483 20181213_JW_Orientia_Karp_1_1 114.89 49.589 38590000 7552200 6008400 7947700 0 5049200 12033000 0 0 3003 179 2639 18169;18170;18171;18172;18173 11888;11889;11890;11891;11892 11888 5 GFGFVTFDDHDPVDK Unmodified 1694.7577 0.75765105 191 A0A024RA27;A0A024RA61;P22626-2;P22626;I6L957;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 2 1 1 2 2 1 1 58.79 59.1 2;3 0.0069858 24783 20181213_JW_Orientia_Karp_1_2 101.89 57.589 102350000 19990000 15837000 6936100 7905700 21926000 26693000 409390 2651300 3004 191 2640 18174;18175;18176;18177;18178;18179;18180;18181;18182;18183;18184 11893;11894 11893 2 GFGFVTFENIDDAK Unmodified 1558.7304 0.73037367 682 K7ELV6;K7ENX8;K7EJV5;Q6ZR81;K7ELT6;B4E2A3;K7EMY9;K7EPM4;Q53XX5;K7ER40;K7EQR7;D6W5Y5;Q14011;Q14011-2 CIRBP Cold-inducible RNA-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 1 1 68.238 68.363 2 0.012178 30494 20181213_JW_Orientia_Karp_1_2 94.767 58.808 6159600 4252500 1907100 0 0 0 0 0 0 3005 682 2641 18185;18186 11895;11896 11896 2 GFGFVTYATVEEVDAAMNAR Oxidation (M) 2162.9943 0.99426928 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q6IPF2;Q0VAC0;F8VZ49;A0A024RC46;B4E0B5;F8VYN5;B4DP35;F8W646 HNRNPA1;HNRPA1;hCG_2020860 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 67.749 67.871 2;3 0.00057677 26743 20181213_JW_Orientia_Karp_2_2 112.91 87.371 22758000 7601100 4739100 0 0 8803100 1614200 0 0 3006 209 2642 18187;18188;18189;18190;18191;18192;18193;18194 11897;11898;11899 11899 162 3 GFGFVTYATVEEVDAAMNARPHK Unmodified 2509.206 0.20599339 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q6IPF2;Q0VAC0;F8VZ49;A0A024RC46;B4E0B5;F8VYN5;B4DP35;F8W646 HNRNPA1;HNRPA1;hCG_2020860 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 62.99 63.289 4 0.0042555 27435 20181213_JW_Orientia_Karp_1_2 73.918 52.717 9699300 0 2683300 6833700 182300 0 0 0 0 3007 209 2643 18195;18196;18197 11900 11900 1 GFGTDEQAIVDVVANR Unmodified 1689.8322 0.83221298 453 B4DT77;B4DWU2;B4DHY4;Q53HM8;B2R7L2;B2R657;P20073-2;P20073 ANXA7 Annexin;Annexin A7 yes no 0 0 0 0 By MS/MS 1 63.044 63.243 2 0.0062639 26953 20181213_JW_Orientia_Karp_1_3 115.24 74.525 0 0 0 0 0 0 0 0 0 3008 453 2644 18198 11901 11901 1 GFHKLEQELK Unmodified 1227.6612 0.66117189 1184 Karp_00677 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 27.443 27.744 3 0.012018 5798 20181213_JW_Orientia_Karp_2_2 114.97 8.3691 24103000 3097800 3122500 3444900 0 7343800 2704800 4389400 0 3009 1184 2645 18199;18200;18201;18202;18203;18204 11902 11902 1 GFHQVPFAPIVFIER Unmodified 1755.9461 0.94606094 348 H7C0R3;Q9H3A5;Q9BUZ3;B4DDN1;Q96AW5;B4DNN3;Q53HS0;A8K3A8;P47897-2;P47897 QARS Glutamine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 1 1 67.42 67.52 3 0.0062345 29618 20181213_JW_Orientia_Karp_1_3 87.447 62.423 19212000 13821000 0 5391000 0 0 0 0 0 3010 348 2646 18205;18206 11903;11904 11904 2 GFLIDGYPR Unmodified 1036.5342 0.53418046 1540 Q6FGX9;Q53EY8;Q5T9B7;P00568;H0Y4J6;H0YID2;Q9Y6K8-2;Q9Y6K8-3;Q9Y6K8 AK1;AK5 Adenylate kinase isoenzyme 1;Adenylate kinase isoenzyme 5 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 56.226 56.488 2 0.0037214 23419 20181213_JW_Orientia_Karp_1_1 110.31 49.522 31634000 16092000 0 0 2525900 4617000 8399200 0 0 3011 1540 2647 18207;18208;18209;18210 11905;11906;11907 11905 3 GFLLLASLR Unmodified 988.60695 0.60695147 186 A0A024R9Q1;P07996;A0PJG0;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 68.178 68.43 2 0.00077428 27029 20181213_JW_Orientia_Karp_2_2 148.38 85.076 25152000 0 4073900 5728300 0 10673000 0 0 4677000 + 3012 186 2648 18211;18212;18213;18214;18215 11908;11909;11910;11911;11912 11910 5 GFLSGLLDNVK Unmodified 1161.6394 0.63937381 1480 M0QXU7;Q9UPE4;Q53G69;O43615;M0R301;M0R124 TIMM44;hTIM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 0 0 0 0 By MS/MS 1 67.424 67.674 2 0.039462 30013 20181213_JW_Orientia_Karp_1_2 86.189 26.071 0 0 0 0 0 0 0 0 0 3013 1480 2649 18216 11913 11913 1 GFNLEMDLICEQGK Unmodified 1652.7538 0.753828 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 65.856 66.076 2 2.3921E-59 29052 20181213_JW_Orientia_Karp_1_2 284.12 175.21 126860000 28651000 34090000 19988000 2359000 10550000 5693800 14395000 11132000 3014 1219 2650 18217;18218;18219;18220;18221;18222;18223;18224 11914;11915;11916;11917;11918;11919 11915 6 GFNLEMDLICEQGK Oxidation (M) 1668.7487 0.74874262 1219 Karp_00886 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 59.075 59.486 2 4.0864E-25 21525 20181213_JW_Orientia_Karp_3_2 227.48 135.37 48284000 0 16069000 16681000 8607600 0 0 277370 6649000 3015 1219 2650 18225;18226;18227;18228;18229 11920;11921;11922;11923;11924;11925;11926;11927 11927 779 8 GFPTIYFSPANK Unmodified 1340.6765 0.6764876 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.882 61.202 2 1.7209E-11 26483 20181213_JW_Orientia_Karp_1_1 205.59 103.07 144980000 51362000 19086000 25757000 5584500 15919000 15162000 304520 11802000 3016 516 2651 18230;18231;18232;18233;18234;18235;18236;18237 11928;11929;11930;11931;11932;11933;11934 11928 7 GFSLEELR Unmodified 949.4869 0.48689592 357 Q6NZ55;A8K4C8;P26373;J3QSB4;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 52.92 53.194 2 0.0041559 20708 20181213_JW_Orientia_Karp_1_3 147.34 68.565 156330000 0 147700000 8633400 0 0 0 0 0 3017 357 2652 18238;18239;18240;18241;18242;18243 11935;11936;11937;11938;11939;11940 11937 6 GFSSGSAVVSGGSR Unmodified 1253.6 0.60002819 804;1657;814 CON__Q3TTY5;CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 33.698 34.092 2 1.7981E-34 9887 20181213_JW_Orientia_Karp_1_2 241.39 202.61 626080000 123450000 97373000 157940000 86471000 0 0 110760000 50085000 + 3018 814;804;1657 2653 18244;18245;18246;18247;18248;18249;18250;18251 11941;11942;11943;11944;11945;11946;11947;11948 11942 8 GFSVVADTPELQR Unmodified 1417.7201 0.72014333 52 C9J9W2;A8K1D2;A0A024R1S8;Q14847-3;Q14847;Q14847-2;B4DIC4;B4DJI4 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.598 53.956 2 2.3373E-34 19574 20181213_JW_Orientia_Karp_2_2 248.09 169.99 185360000 28513000 23106000 40107000 31357000 26384000 32180000 1594600 2122000 3019 52 2654 18252;18253;18254;18255;18256;18257;18258;18259 11949;11950;11951;11952;11953;11954;11955;11956 11953 8 GFTIPEAFR Unmodified 1036.5342 0.53418046 1491 Q5SRT3;Q53FB0;O00299 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 58.722 58.972 2 0.021424 24362 20181213_JW_Orientia_Karp_1_3 83.265 31.41 70979000 20294000 17342000 11368000 1924400 5312700 14738000 0 0 3020 1491 2655 18260;18261;18262;18263;18264;18265 11957;11958 11958 2 GFTPTTAENSSEALSILDVK Unmodified 2079.0372 0.037179952 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 66.628 66.761 2 1.1768E-28 29235 20181213_JW_Orientia_Karp_1_3 216 126.2 90103000 33786000 11349000 22734000 7815300 9846000 4572300 0 0 3021 1358 2656 18266;18267;18268;18269;18270;18271 11959;11960;11961;11962;11963;11964 11961 6 GFVFITFK Unmodified 957.53239 0.53238955 604 D6R9P3;D6RD18;B4DMY3;D6RBZ0;Q53F64;Q99729-3;Q99729-2;Q99729-4;Q99729 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.947 66.182 2 0.0041506 28922 20181213_JW_Orientia_Karp_1_3 148.33 105.46 29175000 0 1659800 5354900 0 9363800 1448600 1338500 10009000 3022 604 2657 18272;18273;18274;18275;18276;18277 11965;11966;11967;11968;11969;11970 11966 6 GGAAGFAALAEQLAEK Unmodified 1502.7729 0.77290718 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 1 1 65.664 65.869 2;3 5.7597E-21 22862 20181213_JW_Orientia_Karp_3_1 239.48 136.52 3652700000 1041900000 478360000 582340000 72314000 503440000 343740000 623740000 6791900 3023 1166 2658 18278;18279;18280;18281;18282;18283;18284;18285;18286;18287;18288 11971;11972;11973;11974;11975;11976;11977;11978;11979 11978 9 GGADVSGGVSAPDISLGEGHLSVK Unmodified 2208.1022 0.10223983 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 54.162 54.428 3 1.0419E-10 21765 20181213_JW_Orientia_Karp_1_2 160.95 125.07 391090000 126520000 89240000 90625000 29806000 32769000 22134000 0 0 3024 1782 2659 18289;18290;18291;18292;18293;18294 11980;11981;11982;11983;11984 11982 5 GGAEGELQALR Unmodified 1099.5622 0.56218613 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 40.233 40.521 2 0.0053078 13718 20181213_JW_Orientia_Karp_1_1 104.05 45.13 15664000 5728400 6691600 0 0 1323600 0 1920800 0 3025 1803 2660 18295;18296;18297;18298 11985;11986 11985 2 GGAEQFMEETER Oxidation (M) 1398.5722 0.57215846 1832 Q6IBT3;Q53HV2;Q99832;B7Z1C9;B7Z7I4;Q99832-2;Q99832-4;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 0 By MS/MS By MS/MS 1 2 32.616 32.849 2 0.0015322 9284 20181213_JW_Orientia_Karp_1_2 123.67 81.982 6060200 2075600 3984600 0 0 0 0 0 0 3026 1832 2661 18299;18300;18301 11987;11988 11988 1461 2 GGAGFPTGLK Unmodified 903.48142 0.48141661 1409;642 Karp_02226;E9PPR0;E9PMX3;B4DUN7;G3V0I5;Q53G70;E5KNH5;P49821-2;P49821;E9PQP1 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial no no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 41.501 41.768 2 0.02646 13862 20181213_JW_Orientia_Karp_1_2 80.165 27.91 130470000 31389000 52990000 21700000 0 4306600 5998300 14089000 0 3027 1409;642 2662 18302;18303;18304;18305;18306;18307 11989 11989 1 GGAGVGSMTK Oxidation (M) 879.41202 0.41201641 433 B0ZBD0;Q8WVX7;P39019 RPS19 40S ribosomal protein S19 yes no 0 0 1 0 By MS/MS By matching 1 1 14.174 14.448 2 0.010741 2101 20181213_JW_Orientia_Karp_1_3 88.37 28.011 218510 0 0 120040 98476 0 0 0 0 3028 433 2663 18308;18309 11990 11990 288 1 GGDDLGYSWYTQAK Unmodified 1559.6892 0.68923713 1216 Karp_00883 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.428 54.744 2 7.422E-18 21902 20181213_JW_Orientia_Karp_1_2 221.32 173.31 46774000 11474000 14296000 9760800 3648800 3610800 3011000 0 972100 3029 1216 2664 18310;18311;18312;18313;18314;18315;18316 11991;11992;11993;11994;11995;11996;11997 11992 7 GGDLMAYDR Oxidation (M) 1012.4284 0.42839476 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2;B4DFF1;Q5T6W1;B3KU16 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 31.334 31.617 2 0.0013929 9058 20181213_JW_Orientia_Karp_1_1 122.13 59.476 67762000 28102000 22243000 13449000 1733800 696320 1538000 0 0 3030 63 2665 18317;18318;18319;18320;18321;18322 11998;11999;12000;12001 11998 66 4 GGEIQPVSVK Unmodified 1012.5553 0.55530983 745 Q9UNM1;B8ZZL8;P61604;A0A024R3X7;B8ZZ54 EPFP1;HSPE1 10 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 35.534 35.954 2 0.031061 9791 20181213_JW_Orientia_Karp_3_2 77.379 31.661 16047000 11547000 0 0 0 0 0 3307200 1193000 3031 745 2666 18323;18324;18325;18326 12002;12003;12004 12004 3 GGELTLLGTQDDISAAK Unmodified 1687.8628 0.8628444 1919 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L yes yes 0 0 0 0 By matching By MS/MS 1 1 58.292 58.566 2 0.0036649 24149 20181213_JW_Orientia_Karp_1_3 103.14 45.986 13132000 0 4250000 8882300 0 0 0 0 0 3032 1919 2667 18327;18328 12005 12005 1 GGELVYTDSEAR Unmodified 1295.5994 0.59935949 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS 1 38.329 38.528 2 0.0052884 12085 20181213_JW_Orientia_Karp_1_3 107.55 78.757 7685600 0 0 7685600 0 0 0 0 0 3033 1803 2668 18329 12006 12006 1 GGFEEPVLLK Unmodified 1087.5914 0.59136099 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3-2;Q59H15 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By MS/MS By matching 1 1 54.507 54.682 2 0.0012307 22303 20181213_JW_Orientia_Karp_1_1 124.98 13.168 19382000 14376000 5005500 0 0 0 0 0 0 3034 2015 2669 18330;18331 12007 12007 1 GGFSDNDAATSELYSR Unmodified 1688.7278 0.72780748 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.819 47.139 2 1.4052E-62 15832 20181213_JW_Orientia_Karp_2_2 274.39 209.23 964380000 234740000 202780000 247130000 80973000 50841000 58548000 20653000 68709000 3035 1126 2670 18332;18333;18334;18335;18336;18337;18338;18339 12008;12009;12010;12011;12012;12013;12014 12011 7 GGFSDNDAATSELYSR Deamidation (NQ) 1689.7118 0.71182307 1126 Karp_00329 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 2 2 1 1 1 49.456 49.774 2 2.9189E-28 17948 20181213_JW_Orientia_Karp_2_3 239.38 138.08 130820000 9854700 14284000 59469000 20955000 12383000 11971000 0 1904400 3036 1126 2670 18340;18341;18342;18343;18344;18345;18346;18347;18348 12015;12016 12016 509 2 GGGAFVQNSQPVAVR Deamidation (NQ) 1486.7528 0.75284044 834 V9HW29;D3DRX6;P33176;B4DS27 HEL-S-61;KIF5B Kinesin-like protein;Kinesin-1 heavy chain yes no 0 1 0 0 By MS/MS 1 45.357 45.555 2 0.0064097 15746 20181213_JW_Orientia_Karp_1_3 113.77 58.046 0 0 0 0 0 0 0 0 0 3037 834 2671 18349 12017 12017 306 1 GGGDLPNSQEALQK Unmodified 1412.6896 0.68957148 1536 V9HW53;O95865 HEL-S-277;DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 36.195 36.588 2 0.0006889 11578 20181213_JW_Orientia_Karp_1_1 142.19 88.699 31239000 11946000 6665800 7180500 2176800 0 0 2312900 956840 3038 1536 2672 18350;18351;18352;18353;18354;18355 12018;12019;12020;12021 12018 4 GGGFGGGSGFGGGSGFGGGSGFSGGGFGGGGFGGGR Unmodified 2830.1869 0.18686594 804 CON__P35908 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 64.598 64.799 3 1.2305E-26 24751 20181213_JW_Orientia_Karp_3_2 158.8 131.63 133660000 26822000 27786000 17241000 3368000 29776000 19384000 0 9285100 + 3039 804 2673 18356;18357;18358;18359;18360;18361;18362 12022;12023;12024;12025 12024 4 GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unmodified 2398.0111 0.011133407 1657 P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 1 1 60.003 60.3 2;3 1.3139E-24 23234 20181213_JW_Orientia_Karp_2_1 172.52 144.61 158280000 39651000 35202000 30842000 17440000 19942000 10465000 2636500 2103100 3040 1657 2674 18363;18364;18365;18366;18367;18368;18369;18370;18371;18372;18373;18374 12026;12027;12028;12029;12030;12031;12032;12033;12034;12035 12032 9 GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR Oxidation (M) 3596.6483 0.64829216 1552 P04632;K7ELJ7;K7EM73;K7EKD8;K7ES78 CAPNS1 Calpain small subunit 1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 70.132 70.249 3 3.6231E-16 31849 20181213_JW_Orientia_Karp_1_2 98.747 74.118 181710000 41268000 65727000 20703000 0 10799000 8699300 34507000 0 3041 1552 2675 18375;18376;18377;18378;18379;18380 12036;12037;12038;12039;12040;12041 12038 1162 6 GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR Unmodified 3580.6534 0.65337754 1552 P04632;K7ELJ7;K7EM73;K7EKD8;K7ES78 CAPNS1 Calpain small subunit 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 71.049 71.171 3 1.4823E-54 28293 20181213_JW_Orientia_Karp_3_2 174.73 129.22 112210000 18134000 57089000 22332000 0 0 0 13597000 1053300 3042 1552 2675 18381;18382;18383;18384;18385;18386 12042;12043;12044;12045 12045 4 GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR Oxidation (M);Deamidation (NQ) 3597.6323 0.63230775 1552 P04632;K7ELJ7;K7EM73;K7EKD8;K7ES78 CAPNS1 Calpain small subunit 1 yes no 0 1 1 0 By MS/MS 1 69.752 70.062 3 7.9147E-08 27776 20181213_JW_Orientia_Karp_3_2 65.264 38.312 9720300 0 0 0 0 0 0 0 9720300 3043 1552 2675 18387 12046 12046 1036 1162 1 GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unmodified 2382.9446 0.94456998 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 3 2 30.107 30.512 2;3 4.5584E-105 8046 20181213_JW_Orientia_Karp_1_3 337.95 283.54 1158200000 146290000 134130000 191240000 199960000 93478000 47275000 156680000 189120000 + 3044 995;996 2676 18388;18389;18390;18391;18392;18393;18394;18395;18396;18397;18398;18399;18400;18401;18402;18403;18404 12047;12048;12049;12050;12051;12052;12053;12054;12055;12056;12057;12058;12059 12050 12 GGGGNFGPGPGSNFR Unmodified 1376.6222 0.62216062 191 A0A024RA27;A0A024RA61;P22626-2;P22626;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 39.731 40.039 2 6.6413E-05 12242 20181213_JW_Orientia_Karp_2_1 154.67 83.171 914950000 239880000 190480000 221370000 93723000 34376000 48628000 86502000 0 3045 191 2677 18405;18406;18407;18408;18409;18410;18411;18412 12060;12061;12062;12063;12064;12065 12061 6 GGGGNFGPGPGSNFR Deamidation (NQ) 1377.6062 0.60617621 191 A0A024RA27;A0A024RA61;P22626-2;P22626;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 1 0 0 By MS/MS 1 44.616 44.815 2 0.0030172 15396 20181213_JW_Orientia_Karp_1_3 129.74 60.144 0 0 0 0 0 0 0 0 0 3046 191 2677 18413 12066 12066 75 1 GGGGPGGGGPGGGSAGGPSQPPGGGGPGIR Unmodified 2269.0584 0.058417951 1930 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 37.109 37.429 2;3 1.5708E-19 11205 20181213_JW_Orientia_Karp_3_1 162.09 114.18 267050000 103250000 53638000 67117000 17348000 0 1989800 23710000 0 3047 1930 2678 18414;18415;18416;18417;18418;18419;18420;18421;18422;18423 12067;12068;12069;12070 12070 4 GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unmodified 2704.1538 0.15383448 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 60.269 60.589 2;3 7.9743E-41 23140 20181213_JW_Orientia_Karp_2_2 208.4 181.4 460400000 65339000 54175000 68082000 63727000 91296000 60418000 37532000 19827000 + 3048 1653 2679 18424;18425;18426;18427;18428;18429;18430;18431;18432;18433;18434;18435;18436;18437;18438;18439;18440 12071;12072;12073;12074;12075;12076;12077;12078;12079;12080;12081;12082 12078 12 GGGGSGGYYGQGGMSGGGWR Oxidation (M) 1819.7332 0.73324399 17 A0A024QZP1;B4DHY1;Q53F48;A0A024QZK8;P31942-4;P31942-3;P31942-2;P31942 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 36.136 36.536 2 0.034074 10732 20181213_JW_Orientia_Karp_3_1 62.377 36.486 8809400 0 4983800 2670900 0 0 0 1154600 0 3049 17 2680 18441;18442;18443 12083 12083 1 GGGIGSYWGNVR Unmodified 1221.5891 0.58906958 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.523 48.868 2 1.3951E-07 17075 20181213_JW_Orientia_Karp_2_3 189.38 126.72 360480000 80777000 105910000 49894000 45518000 27056000 15973000 88483 35272000 3050 1133 2681 18444;18445;18446;18447;18448;18449;18450;18451 12084;12085;12086;12087;12088;12089;12090 12089 7 GGGLSGQAGAVQLGISR Unmodified 1526.8165 0.81650333 1414 Karp_02240 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 49.169 49.503 2;3 8.4133E-68 17230 20181213_JW_Orientia_Karp_2_1 278.64 173.24 2092000000 459700000 512270000 488680000 177480000 108350000 178400000 3587200 163530000 3051 1414 2682 18452;18453;18454;18455;18456;18457;18458;18459;18460;18461;18462;18463;18464;18465 12091;12092;12093;12094;12095;12096;12097;12098;12099;12100;12101;12102;12103;12104 12095 13 GGHMDDGGYSMNFNMSSSR 3 Oxidation (M) 2096.7622 0.76223721 1663 P38159;H0Y6E7;H3BT71;P38159-2;B4E352;Q2VIN3;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 3 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 28.901 29.26 3 0.00023611 7199 20181213_JW_Orientia_Karp_3_1 114.56 103.19 17441000 4523700 0 1053200 1653400 1452700 1062300 4021200 3674200 3052 1663 2683 18466;18467;18468;18469;18470;18471;18472 12105;12106;12107;12108;12109;12110 12109 1290;1291;1292 6 GGIGDIQFPLVSDINK Unmodified 1671.8832 0.88318591 1399 Karp_02188 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.665 72.729 2 4.0306E-49 29682 20181213_JW_Orientia_Karp_2_1 311.54 229.04 4274900000 1030800000 754200000 858880000 212800000 505920000 298840000 613470000 0 3053 1399 2684 18473;18474;18475;18476;18477;18478;18479;18480 12111;12112;12113;12114;12115;12116;12117;12118;12119 12114 9 GGIGDIQFPLVSDINK Deamidation (NQ) 1672.8672 0.8672015 1399 Karp_02188 yes yes 0 1 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 73.484 73.521 2 0.0013267 34006 20181213_JW_Orientia_Karp_1_1 131.66 80.377 31579000 17728000 0 0 3758500 4073300 0 6019200 0 3054 1399 2684 18481;18482;18483;18484 12120;12121 12120 909 2 GGIGDIQFPLVSDINKDISK Deamidation (NQ) 2116.1052 0.10519994 1399 Karp_02188 yes yes 0 1 0 1 By matching By matching By MS/MS 1 1 1 70.345 70.495 3 0.016137 25420 20181213_JW_Orientia_Karp_3_1 87.669 60.461 8597000 0 0 0 0 3159200 1252200 4185600 0 3055 1399 2685 18485;18486;18487 12122 12122 909 1 GGIMLPEK Oxidation (M) 859.44734 0.44733929 745 Q9UNM1;B8ZZL8;P61604;S4R3N1 EPFP1;HSPE1;HSPE1-MOB4 10 kDa heat shock protein, mitochondrial yes no 0 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 38.328 38.641 2 0.013793 11086 20181213_JW_Orientia_Karp_2_2 93.195 24.409 15051000 0 6028400 4386800 2311800 2323600 0 0 0 3056 745 2686 18488;18489;18490;18491 12123 12123 438 1 GGLILTNDESISK Unmodified 1345.7089 0.70890994 1140 Karp_00452 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 49.229 49.573 2 0.00076304 18884 20181213_JW_Orientia_Karp_1_1 146.71 65.794 219880000 33291000 0 89907000 28965000 17069000 33025000 411690 17210000 3057 1140 2687 18492;18493;18494;18495;18496;18497;18498 12124;12125 12124 1 GGLILTNDESISK Deamidation (NQ) 1346.6929 0.69292553 1140 Karp_00452 yes yes 0 1 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 54.155 54.421 2 0.0049271 21678 20181213_JW_Orientia_Karp_1_2 119.03 56.862 71264000 15306000 21318000 14306000 6186800 7162400 6985600 0 0 3058 1140 2687 18499;18500;18501;18502;18503;18504 12126;12127 12126 529 2 GGLVSDAYGEDDFSR Unmodified 1586.6849 0.68488004 169 A0A024R8R0;J3QQJ0;Q9UHR5-2;Q9UHR5;J3KS14;F5H478;B7Z4X9;J3KRU5;X6R3T8;J3QLH3 SAP30BP SAP30-binding protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 51.367 51.555 2 0.0081805 19788 20181213_JW_Orientia_Karp_1_2 100.02 69.691 15699000 5954500 4850000 0 0 2993500 1900700 0 0 3059 169 2688 18505;18506;18507;18508 12128;12129;12130 12129 3 GGNICPAGAVGFGVR Unmodified 1430.7089 0.70886714 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.716 51.061 2 2.112E-13 19845 20181213_JW_Orientia_Karp_1_1 205.53 124.24 473140000 134590000 115500000 59602000 43866000 26509000 33650000 47913000 11510000 3060 1349 2689 18509;18510;18511;18512;18513;18514;18515;18516 12131;12132;12133;12134;12135;12136;12137 12131 7 GGPGSAVSPYPTFNPSSDVAALHK Unmodified 2355.1495 0.14952437 1548 Q5TZZ9;P04083;B5BU38;Q5T3N1;Q5T3N0 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.562 54.919 3 2.5578E-08 20210 20181213_JW_Orientia_Karp_2_1 147.28 122.77 1790400000 303680000 278170000 655550000 124660000 232170000 172210000 104730 23839000 3061 1548 2690 18517;18518;18519;18520;18521;18522;18523;18524 12138;12139;12140;12141;12142;12143;12144 12141 7 GGPLQALTR Unmodified 911.51886 0.51886475 222 A0A024RBE7;P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 43.372 43.643 2 0.01833 14922 20181213_JW_Orientia_Karp_1_2 85.161 42.246 35971000 9408500 13336000 10630000 0 745680 0 1850700 0 3062 222 2691 18525;18526;18527;18528;18529 12145 12145 1 GGPPFAFVEFEDPR Unmodified 1563.7358 0.73579339 1040 Q59FA2;J3KTL2;Q07955-3;Q07955;Q07955-2;J3QQV5;J3KSW7 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 69.887 70.038 2 0.0084328 27954 20181213_JW_Orientia_Karp_2_2 100.69 52.749 33830000 7891800 4843000 0 4009800 4700300 2480900 8276500 1627600 3063 1040 2692 18530;18531;18532;18533;18534;18535;18536 12146;12147;12148;12149;12150;12151 12149 6 GGPTPQEAIQR Unmodified 1152.5887 0.58873523 1974 Q9H444 CHMP4B Charged multivesicular body protein 4b yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 32.473 32.846 2 0.00088283 8974 20181213_JW_Orientia_Karp_3_1 131.09 87.841 18663000 2950700 2908200 2644600 3521600 0 1614300 4018400 1005000 3064 1974 2693 18537;18538;18539;18540;18541;18542;18543 12152;12153 12153 2 GGQIGLQAPGLSVSGPQGHLESGSGK Unmodified 2417.2299 0.22989995 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 2 2 1 1 1 2 1 50.269 50.629 2;3 0.0022965 19045 20181213_JW_Orientia_Karp_1_3 94.61 58.718 682750000 200430000 178010000 140790000 53020000 32277000 30786000 35371000 12052000 3065 1782 2694 18544;18545;18546;18547;18548;18549;18550;18551;18552;18553;18554 12154;12155;12156 12154 3 GGQTILNLPVYNSVDEAVQK Deamidation (NQ) 2145.0954 0.095363533 1120 Karp_00318 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 1 4 2 3 3 67.78 67.988 2;3 3.5428E-60 29988 20181213_JW_Orientia_Karp_1_2 259.96 183.79 200720000 44690000 21543000 47577000 2212600 35733000 17313000 14176000 17476000 3066 1120 2695 18555;18556;18557;18558;18559;18560;18561;18562;18563;18564;18565;18566;18567;18568;18569;18570;18571;18572;18573;18574;18575;18576;18577 12157;12158;12159;12160;12161;12162;12163;12164;12165;12166 12158 496 7 GGQTILNLPVYNSVDEAVQK Unmodified 2144.1113 0.11134795 1120 Karp_00318 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 66.257 66.443 2;3 2.3029E-22 26005 20181213_JW_Orientia_Karp_2_2 205 162.18 325380000 85345000 59557000 88805000 0 31680000 34111000 6284400 19598000 3067 1120 2695 18578;18579;18580;18581;18582;18583;18584;18585;18586;18587;18588;18589;18590;18591 12167;12168;12169;12170;12171;12172;12173 12170 7 GGSGGGGSISGGGYGSGGGSGGR Unmodified 1740.7412 0.74116614 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 25.821 26.18 2 7.871E-45 5199 20181213_JW_Orientia_Karp_2_2 231.21 174.58 161750000 77138000 0 12608000 17512000 10036000 7114300 24172000 13175000 + 3068 804;1657 2696 18592;18593;18594;18595;18596;18597;18598 12174;12175;12176;12177;12178;12179;12180 12177 7 GGSGGGYGSGGGSGSGGGYSSGGGSR Unmodified 2021.806 0.80595124 814 CON__Q3TTY5 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 23.15 23.458 2 9.2207E-14 5040 20181213_JW_Orientia_Karp_1_2 158.92 120.93 4818900 0 1407900 363310 1365900 631570 497280 552920 0 + 3069 814 2697 18599;18600;18601;18602;18603;18604 12181;12182 12181 2 GGSGGGYGSGGGSR Unmodified 1111.4643 0.46426299 814 CON__Q3TTY5 yes yes 0 0 0 0 By MS/MS 1 11.539 11.539 2 0.00043047 1937 20181213_JW_Orientia_Karp_1_1 147.58 26.946 299890 299890 0 0 0 0 0 0 0 + 3070 814 2698 18605 12183 12183 1 GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unmodified 3222.2743 0.27429656 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 2 2 1 32.067 32.445 3 2.9407E-41 8744 20181213_JW_Orientia_Karp_1_2 167.88 144.15 481630000 74093000 122830000 144800000 126120000 7588900 0 5378300 817580 + 3071 1653 2699 18606;18607;18608;18609;18610;18611;18612;18613;18614;18615;18616;18617;18618;18619;18620;18621 12184;12185;12186;12187;12188;12189;12190;12191;12192;12193;12194;12195;12196;12197 12186 14 GGSGGSYGGGGSGGGYGGGSGSR Unmodified 1790.7204 0.72043069 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 23.202 23.613 2 2.4271E-83 4231 20181213_JW_Orientia_Karp_2_2 281.68 127.55 431420000 0 106880000 0 59786000 68935000 83564000 50071000 62188000 + 3072 1653 2700 18622;18623;18624;18625;18626;18627;18628 12198;12199;12200;12201;12202;12203;12204 12201 7 GGSGGSYGR Unmodified 796.34638 0.34637969 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS 1 5.3207 5.6719 2 0.023033 1055 20181213_JW_Orientia_Karp_2_3 82.279 61.797 96714 0 0 0 0 0 96714 0 0 + 3073 1653 2701 18629 12205 12205 1 GGSISGGGYGSGGGK Unmodified 1196.5422 0.54217896 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 23.036 23.369 2 2.962E-19 5030 20181213_JW_Orientia_Karp_1_2 213.63 165.97 129000000 9590600 23999000 10716000 18375000 14598000 10878000 28434000 12405000 + 3074 804;1657 2702 18630;18631;18632;18633;18634;18635;18636;18637 12206;12207;12208;12209;12210;12211;12212;12213 12207 8 GGSSSGGGGYSSGGGSR Unmodified 1372.5603 0.56034822 814 CON__Q3TTY5 yes yes 0 0 0 0 By MS/MS By matching 1 1 15.175 15.299 2 3.2592E-09 2581 20181213_JW_Orientia_Karp_1_1 177.36 118.01 9984000 9566800 0 0 417160 0 0 0 0 + 3075 814 2703 18638;18639 12214 12214 1 GGSSSGGGYGSGGGGSSSVK Unmodified 1587.6761 0.67610626 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 19.548 19.878 2 7.2838E-17 3617 20181213_JW_Orientia_Karp_2_1 191.63 143.03 20255000 0 2262500 0 5766300 3399500 4409200 4417200 0 + 3076 804;1657 2704 18640;18641;18642;18643;18644;18645 12215;12216;12217;12218;12219;12220 12217 6 GGSTSYGTGSETESPR Unmodified 1571.67 0.66995825 1545 P02671-2;P02671 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain yes no 0 0 0 0 By MS/MS 1 26.694 26.694 2 0.0054743 6908 20181213_JW_Orientia_Karp_1_1 140.14 93.735 0 0 0 0 0 0 0 0 0 3077 1545 2705 18646 12221 12221 1 GGSTTGSQFLEQFK Unmodified 1485.71 0.70997257 666 B4DZJ6;F8W726;B4DYY5;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.226 52.533 2 1.803E-05 20536 20181213_JW_Orientia_Karp_1_2 188.27 81.064 107340000 26690000 17364000 22329000 14310000 13838000 10563000 2248000 0 3078 666 2706 18647;18648;18649;18650;18651;18652;18653 12222;12223;12224;12225;12226;12227 12223 6 GGTQEPAPVPAEPFDNTTYK Unmodified 2117.9906 0.99056411 1711 Q96DP0;P56181-2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 53.095 53.429 2 2.2411E-07 21072 20181213_JW_Orientia_Karp_1_2 146.1 114.95 50292000 14379000 14143000 11121000 2717800 0 2871100 5058900 0 3079 1711 2707 18654;18655;18656;18657;18658;18659 12228;12229;12230;12231 12229 4 GGVIPAEVMDSITQLVELSK Oxidation (M) 2101.0977 0.097671719 1159 Karp_00602;Karp_00592 yes no 0 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 74.549 74.562 2 0.022289 34646 20181213_JW_Orientia_Karp_1_1 70.26 41.188 23314000 16274000 0 0 0 1680800 1254400 4104700 0 3080 1159 2708 18660;18661;18662;18663 12232 12232 691 1 GGVIPAEVMDSITQLVELSK Unmodified 2085.1028 0.1027571 1159 Karp_00602;Karp_00592 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 77.407 77.39 2 0.00010219 36245 20181213_JW_Orientia_Karp_1_3 130.47 102.26 51623000 19086000 5729500 9645000 0 4476700 2704300 9982000 0 3081 1159 2708 18664;18665;18666;18667;18668;18669 12233;12234 12234 2 GGVNDNFQGVLQNVR Unmodified 1615.8067 0.80666693 186 A0A024R9Q1;P07996;P07996-2;A0PJG0;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.88 55.238 2 1.724E-27 21887 20181213_JW_Orientia_Karp_1_3 232.56 116.18 281060000 71748000 59956000 82485000 15960000 19338000 20883000 7041700 3651000 + 3082 186 2709 18670;18671;18672;18673;18674;18675;18676;18677 12235;12236;12237;12238;12239;12240;12241;12242;12243;12244 12238 10 GGVNDNFQGVLQNVR Deamidation (NQ) 1616.7907 0.79068251 186 A0A024R9Q1;P07996;P07996-2;A0PJG0;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 2 2 3 1 58.711 59.018 2 1.1984E-20 22230 20181213_JW_Orientia_Karp_2_2 225.55 136.52 183690000 45463000 42430000 67592000 1816300 9989400 9412700 3059500 3925600 + 3083 186 2709 18678;18679;18680;18681;18682;18683;18684;18685;18686;18687;18688;18689;18690;18691;18692;18693;18694 12245;12246;12247;12248;12249;12250;12251;12252 12249 70;71 7 GGVQVPAVDISSSLGGR Unmodified 1597.8424 0.84238373 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching 1 1 59.47 59.721 2 0.0040906 22748 20181213_JW_Orientia_Karp_2_2 102.52 59.212 59993000 0 0 0 0 32497000 27496000 0 0 3084 1782 2710 18695;18696 12253 12253 1 GGVSLAALK Unmodified 814.49125 0.49125301 1763 Q02539 HIST1H1A Histone H1.1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 43.336 43.519 2 0.00080231 14646 20181213_JW_Orientia_Karp_1_3 139.97 65.715 57012000 13612000 40040000 3359700 0 0 0 0 0 3085 1763 2711 18697;18698;18699;18700;18701 12254;12255;12256;12257;12258 12256 5 GGYFDEFGIIR Unmodified 1272.6139 0.61388734 391 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;P11413-3;P11413-2;Q0PHS1;E7EM57;E7EUI8;B4DYA7;Q0PHS6 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 By MS/MS By matching 1 1 67.407 67.506 2 0.0081947 30168 20181213_JW_Orientia_Karp_1_1 99.013 54.664 12156000 7548600 0 4607500 0 0 0 0 0 3086 391 2712 18702;18703 12259 12259 1 GGYLNIVK Unmodified 862.49125 0.49125301 1100 Karp_00268 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 1 1 2 1 44.525 44.801 2 0.0042057 15433 20181213_JW_Orientia_Karp_1_3 138.07 38.155 76134000 29318000 25587000 14113000 2879900 3998700 0 0 237330 3087 1100 2713 18704;18705;18706;18707;18708;18709;18710;18711;18712;18713 12260;12261;12262;12263;12264;12265;12266 12262 7 GGYVYSK Unmodified 772.37555 0.37555455 1173 Karp_00627 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 23.929 24.28 2 0.017678 5541 20181213_JW_Orientia_Karp_1_2 106.42 63.941 18174000 829790 11801000 0 1778500 1693600 844330 402440 824620 3088 1173 2714 18714;18715;18716;18717;18718;18719;18720 12267;12268 12267 2 GHDLNEDGLVSWEEYK Unmodified 1889.8432 0.84317159 514 Q6IAW5;B3KQF5;O43852;O43852-3;O43852-5;O43852-10;O43852-6;O43852-13;O43852-14;O43852-11 CALU Calumenin yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 53.122 53.346 3 0.001348 19376 20181213_JW_Orientia_Karp_2_1 108.06 67.543 38565000 10447000 0 9357600 10178000 8583400 0 0 0 3089 514 2715 18721;18722;18723;18724;18725 12269;12270;12271;12272 12270 4 GHEVVIEALNAIK Unmodified 1391.7773 0.77726428 1342 Karp_01516 yes yes 0 0 0 0 By MS/MS 1 52.127 52.778 2 0.014898 18443 20181213_JW_Orientia_Karp_3_1 91.313 66.794 1016800 0 0 0 0 0 0 1016800 0 3090 1342 2716 18726 12273 12273 1 GHFFVEDQIYCEK Unmodified 1670.7399 0.73989249 1487 V9HW92;O00151 HEL-S-112;PDLIM1 PDZ and LIM domain protein 1 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 2 48.006 48.368 2;3 0.010903 16585 20181213_JW_Orientia_Karp_2_1 116.71 85.057 50397000 9217500 7302400 5851200 10425000 1699700 8898700 509980 6492400 3091 1487 2717 18727;18728;18729;18730;18731;18732;18733;18734;18735;18736 12274;12275;12276 12274 3 GHGINFENAVYK Unmodified 1347.6571 0.65714914 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 1 1 2 1 39.142 39.503 2;3 5.3272E-08 12636 20181213_JW_Orientia_Karp_1_2 189.17 97.299 570550000 192300000 205240000 72442000 34511000 12044000 0 22800000 31225000 3092 1178 2718 18737;18738;18739;18740;18741;18742;18743;18744;18745;18746 12277;12278;12279;12280;12281 12278 5 GHGINFENAVYK Deamidation (NQ) 1348.6412 0.64116473 1178 Karp_00644 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 40.584 40.854 3 6.9336E-06 13861 20181213_JW_Orientia_Karp_1_1 178.54 146.21 66303000 31836000 19295000 7986800 0 1377900 0 5807200 0 3093 1178 2718 18747;18748;18749;18750;18751 12282;12283 12282 585 2 GHIEYLGPK Unmodified 1012.5342 0.53418046 1075 Karp_00051 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 30.961 31.286 2 0.005285 7968 20181213_JW_Orientia_Karp_2_3 123.72 93.645 102950000 17910000 33291000 43427000 0 0 0 8317700 0 3094 1075 2719 18752;18753;18754;18755;18756 12284;12285;12286;12287 12287 4 GHIFNINQGPVVTLYEFEPAAGTK Unmodified 2601.3227 0.32273771 1314 Karp_01269 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 67.072 67.222 3 0.0010371 29532 20181213_JW_Orientia_Karp_1_3 90.882 62.807 58915000 26009000 11707000 13635000 4235600 0 3328300 0 0 3095 1314 2720 18757;18758;18759;18760;18761 12288;12289;12290;12291 12290 3 GHLENNPALEK Unmodified 1220.6149 0.61494998 229 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;P05388-2;F8VPE8;G3V210;F8VW21;Q8NHW5;F8VQY6;F8VRK7;F8VS58;F8VZS0;F8VWV4 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 24.364 24.69 2 0.00054401 5691 20181213_JW_Orientia_Karp_1_2 139.38 68.566 13046000 2702500 4700500 2893800 0 0 286600 1586400 876280 3096 229 2721 18762;18763;18764;18765;18766;18767;18768 12292;12293;12294;12295 12293 4 GHQQLYWSHPR Unmodified 1407.6796 0.67961592 1731 P62273;P62273-2 RPS29 40S ribosomal protein S29 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 26.043 26.344 3 0.00013292 5911 20181213_JW_Orientia_Karp_2_3 147.28 99.092 120470000 12358000 29626000 31272000 13383000 8792200 7974200 0 17060000 3097 1731 2722 18769;18770;18771;18772;18773;18774;18775 12296;12297;12298;12299;12300 12299 5 GHSEAVIR Unmodified 867.45626 0.45626449 1321 Karp_01283 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 16.661 16.89 2 0.030576 2796 20181213_JW_Orientia_Karp_1_3 82.305 2.8365 10318000 4640000 1716100 2984500 617380 0 0 360330 0 3098 1321 2723 18776;18777;18778;18779;18780 12301 12301 1 GHTCIIGGAQSGR Unmodified 1312.6306 0.63061682 1431 Karp_02388 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 23.872 24.273 3 0.0059902 5512 20181213_JW_Orientia_Karp_1_2 127.56 90.379 8363900 0 4178800 337990 590260 781830 0 2128200 346750 3099 1431 2724 18781;18782;18783;18784;18785;18786 12302;12303 12302 2 GHTPTQPGALNQR Unmodified 1375.6957 0.69565991 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 23.429 23.795 3 0.012743 5106 20181213_JW_Orientia_Karp_3_1 103.44 54.872 22018000 2750200 7278000 0 3586700 2578500 1032500 2283200 2509000 3100 195 2725 18787;18788;18789;18790;18791;18792;18793 12304;12305;12306;12307 12307 4 GHVDILAPTVQELAALEK Unmodified 1903.0415 0.041477469 292 F1T0B3;A3RJH1;Q92499-3;Q92499 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 65.503 65.619 3 0.00093369 28369 20181213_JW_Orientia_Karp_1_3 103.75 41.375 20431000 9020100 5949500 5461400 0 0 0 0 0 3101 292 2726 18794;18795;18796 12308 12308 1 GHVLIIDDEHDVR Unmodified 1516.7634 0.76340513 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 37.242 37.493 3 0.00040916 12054 20181213_JW_Orientia_Karp_1_1 146.36 110.62 17694000 0 0 0 0 17694000 0 0 0 3102 1358 2727 18797;18798 12309;12310 12309 2 GHVQPIR Unmodified 805.45587 0.45587056 212 Q75MH1;A0A024RB14;P62854;Q5JNZ5 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 15.362 15.628 2 0.020862 2573 20181213_JW_Orientia_Karp_1_3 101.33 38.614 22076000 12143000 4151600 3911300 477320 0 942160 450930 0 3103 212 2728 18799;18800;18801;18802;18803;18804 12311;12312;12313;12314;12315;12316 12313 6 GHYTEGAELVDAVLDVVR Unmodified 1941.9796 0.97960549 1550;1964 P04350;B4DJ43;B4DE77;M0R278;M0R1I1;Q9BUF5;K7ESM5;B3KS31;K7EL29;K7ES63 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 71.658 71.736 3 0.0006673 32775 20181213_JW_Orientia_Karp_1_2 109.48 56.95 116190000 18972000 24400000 12935000 1744400 11182000 5509400 41444000 0 3104 1550;1964 2729 18805;18806;18807;18808;18809;18810;18811;18812 12317;12318;12319;12320;12321;12322;12323 12318 7 GHYTEGAELVDSVLDVVR Unmodified 1957.9745 0.97452012 1566;1747;602 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;Q5ST81;B7ZAK1;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B4DMJ5 TUBB;TUBB2C;TUBB4B Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 67.226 67.416 2;3 1.1852E-12 29884 20181213_JW_Orientia_Karp_1_2 190.18 125.81 1661400000 606860000 308430000 293180000 0 167090000 92484000 40176000 153200000 3105 1566;1747;602 2730 18813;18814;18815;18816;18817;18818;18819;18820;18821;18822;18823;18824;18825 12324;12325;12326;12327;12328;12329;12330;12331 12326 8 GHYTEGAELVDSVLDVVRK Unmodified 2086.0695 0.069483134 1566;1747;602 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;Q5ST81;B7ZAK1;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B4DMJ5 TUBB;TUBB2C;TUBB4B Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 1 By MS/MS 1 61.472 61.472 3 0.0012044 26594 20181213_JW_Orientia_Karp_1_1 136.35 98.875 0 0 0 0 0 0 0 0 0 3106 1566;1747;602 2731 18826 12332 12332 1 GHYTIGK Unmodified 774.40244 0.40243801 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68366-2;P68366;F8VVB9;F8VRZ4;F8VS66;F8VWV9;Q6QMJ5;C9JDL2;C9JEV8;C9JQ00;C9JJQ8;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q13748-2;Q6PEY2;Q8N532;F8VQQ4 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA1;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 17.6 17.829 2 0.021837 3066 20181213_JW_Orientia_Karp_3_1 100.07 44.625 31715000 16913000 579930 11174000 1690900 0 0 1357100 0 3107 512;1887 2732 18827;18828;18829;18830;18831 12333;12334;12335 12335 3 GIAAGDQTSVGLTNQER Unmodified 1715.8438 0.84384029 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 41.459 41.796 2 6.0112E-32 14279 20181213_JW_Orientia_Karp_1_1 264.58 199.3 388940000 91256000 135830000 0 38279000 25463000 35081000 29171000 33859000 3108 1169 2733 18832;18833;18834;18835;18836;18837;18838 12336;12337;12338;12339;12340;12341;12342 12336 7 GIAAMPSGTGK Oxidation (M) 1004.4961 0.4960804 1173 Karp_00627 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 1 1 2 2 23.722 24.137 2 0.0033401 5072 20181213_JW_Orientia_Karp_2_3 109.44 71.931 56153000 0 12545000 9407800 10274000 4472200 5470400 7874800 6108800 3109 1173 2734 18839;18840;18841;18842;18843;18844;18845;18846;18847;18848;18849 12343;12344;12345;12346 12345 727 4 GIAEGIEIGEIK Unmodified 1227.6711 0.67106787 1114 Karp_00298 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 55.812 56.169 2 1.8188E-07 20962 20181213_JW_Orientia_Karp_2_1 213.8 115.34 101950000 18664000 17093000 15753000 2473500 13145000 12115000 22006000 699510 3110 1114 2735 18850;18851;18852;18853;18854;18855;18856;18857 12347;12348;12349;12350;12351;12352;12353;12354 12350 8 GIAHCFEEIIIPGIQVVK Unmodified 2022.0972 0.097218209 1175 Karp_00629 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.165 68.367 3 0.0025491 27387 20181213_JW_Orientia_Karp_2_3 96.673 30.427 72308000 21634000 5474300 9404600 0 9795300 5585300 9899300 10515000 3111 1175 2736 18858;18859;18860;18861;18862;18863;18864 12355;12356;12357;12358 12356 4 GIALADLGK Unmodified 856.50182 0.5018177 1323;1152 Karp_01552;Karp_00538;Karp_01308 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 49.233 49.625 2 0.019298 18558 20181213_JW_Orientia_Karp_1_2 84.568 39.595 86885000 0 25583000 6994700 40018000 0 12690000 0 1599800 3112 1152;1323 2737 18865;18866;18867;18868;18869 12359;12360;12361;12362 12359 4 GIALDDLGK Unmodified 900.49165 0.49164694 1448;1264;1145 Karp_00478;Karp_02495;Karp_01053 no no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 48.839 49.089 2 0.031129 18125 20181213_JW_Orientia_Karp_1_2 77.318 39.672 80196000 16758000 15961000 10838000 19992000 4447800 12199000 0 0 3113 1145;1448;1264 2738 18870;18871;18872;18873;18874;18875 12363 12363 1 GIALDDSGKPLEAVENFNFAIK Unmodified 2347.206 0.20597662 1447 Karp_02466 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 69.124 69.308 3 0.00157 28024 20181213_JW_Orientia_Karp_2_1 102.47 55.68 36239000 0 0 4566600 1577700 10290000 3238700 11647000 4919400 3114 1447 2739 18876;18877;18878;18879;18880;18881;18882 12364;12365;12366;12367 12365 4 GIAYIEFK Unmodified 939.50657 0.50656873 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338;H7BY16;Q9BQ02 NCL Nucleolin yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 52.891 53.199 2 0.021638 19266 20181213_JW_Orientia_Karp_2_1 87.323 51.967 93072000 16937000 15781000 4469500 17061000 6750500 31753000 319480 0 3115 88 2740 18883;18884;18885;18886;18887;18888;18889 12368 12368 1 GIDAAQAVMQK Unmodified 1130.5754 0.57539335 1256 Karp_00936 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 41.576 41.766 2 2.4085E-05 14318 20181213_JW_Orientia_Karp_1_1 167.12 112.01 94638000 33440000 30011000 30661000 0 356790 169410 0 0 3116 1256 2741 18890;18891;18892;18893;18894 12369;12370;12371 12369 3 GIDAAQAVMQK Oxidation (M) 1146.5703 0.57030797 1256 Karp_00936 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 34.318 34.609 2 0.033337 9690 20181213_JW_Orientia_Karp_2_3 108.47 66.183 78021000 24975000 25027000 21758000 0 0 2099900 4160800 0 3117 1256 2741 18895;18896;18897;18898;18899 12372 12372 0 GIDLEYFNPK Unmodified 1194.5921 0.59208927 1342 Karp_01516 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.153 59.44 2 3.5112E-05 22863 20181213_JW_Orientia_Karp_2_3 158.87 102.44 163980000 35490000 21223000 50112000 11882000 18183000 23149000 0 3936700 3118 1342 2742 18900;18901;18902;18903;18904;18905;18906 12373;12374;12375;12376;12377;12378;12379;12380 12379 8 GIDPFSLDALSK Unmodified 1261.6554 0.65541781 262 A1JUI8;B4DPJ8;Q59ET3;B2R9K8;A0A024RDL1;P40227;P40227-2;B4DN39 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 68.485 68.695 2 0.016324 30969 20181213_JW_Orientia_Karp_1_1 88.155 29.644 28306000 6497300 5418000 10738000 0 0 828860 2941400 1882600 3119 262 2743 18907;18908;18909;18910;18911;18912 12381 12381 1 GIEQAVQSHAVAEEEAR Unmodified 1822.881 0.88095408 592 B4DS66;B4DKR1;Q16891-2;Q16891;H7C463;C9J406;B9A067;B4DQY2;Q16891-3;Q16891-4;B4DT20 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 38.593 38.909 3 0.029577 12335 20181213_JW_Orientia_Karp_1_3 71.929 47.938 77217000 37911000 20361000 15944000 702940 1539900 0 757090 0 3120 592 2744 18913;18914;18915;18916;18917;18918 12382;12383 12383 2 GIFFSHR Unmodified 862.44497 0.44497152 138 A0A024R6K8;P23381;P23381-2;B4DTK8;G3V277;G3V3H8;G3V3Y5;G3V423;G3V3P2;G3V227;G3V5U1;G3V456;G3V2Y7 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 34.344 34.665 2 0.017678 10099 20181213_JW_Orientia_Karp_1_3 106.42 46.121 145100000 38692000 74647000 21475000 2705600 2486800 1071800 4022800 0 3121 138 2745 18919;18920;18921;18922;18923;18924;18925 12384;12385;12386;12387 12385 4 GIFNGFSVTLK Deamidation (NQ) 1182.6285 0.62847478 223 F8VVM2;Q8NCF7;Q53HC3;B2RE88;A0A024RBE8;A0A024RBH9;Q00325-2;Q00325;F8VZL5;F8VWR4;F8VWQ0 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 70.346 70.462 2 0.0016145 32088 20181213_JW_Orientia_Karp_1_1 131.09 98.733 31865000 13730000 2430000 4428100 0 1509600 1903700 7863500 0 3122 223 2746 18926;18927;18928;18929;18930;18931 12388;12389;12390;12391 12388 89 4 GIFPVLCK Unmodified 932.51536 0.51535927 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 57.529 57.861 2 0.026918 21776 20181213_JW_Orientia_Karp_2_2 84.359 47.658 37960000 0 11725000 4041500 0 4378400 16000000 0 1816100 3123 1597 2747 18932;18933;18934;18935;18936 12392;12393;12394;12395;12396 12394 5 GIFTSEIGTK Unmodified 1051.555 0.55497548 878 E7EUY0;P78527-2;P78527 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 47.187 47.461 2 0.011745 17465 20181213_JW_Orientia_Karp_1_1 90.15 60.344 36412000 14782000 11319000 8886500 1423600 0 0 0 0 3124 878 2748 18937;18938;18939;18940 12397;12398;12399 12397 3 GIGALYVR Unmodified 847.49159 0.49158736 1276 Karp_01108 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 44.41 44.748 2 0.0043163 14674 20181213_JW_Orientia_Karp_3_1 132.94 73.3 112700000 34124000 68108000 0 2888500 2680400 2610500 2108000 182260 3125 1276 2749 18941;18942;18943;18944;18945;18946;18947;18948 12400;12401;12402;12403;12404;12405 12405 6 GIGGTTTTSPEEPAHASFK Unmodified 1886.901 0.90102082 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.291 36.612 3 0.0082257 10836 20181213_JW_Orientia_Karp_3_1 99.915 58.537 5478400000 30234000 31505000 2325900000 271340000 725290000 316070000 1778100000 0 3126 1166 2750 18949;18950;18951;18952;18953;18954;18955 12406;12407;12408;12409;12410;12411;12412 12412 7 GIGLGGGNDER Unmodified 1043.4996 0.49958587 1458 Karp_02603 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 32.888 33.178 2 0.02921 9424 20181213_JW_Orientia_Karp_1_3 79.986 29.354 80239000 20566000 37336000 16263000 0 0 2035900 4038800 0 3127 1458 2751 18956;18957;18958;18959;18960 12413;12414 12413 2 GIGMGNIGPAGMGMEGIGFGINK Oxidation (M) 2193.0381 0.038065125 1701 P52272-2;P52272;Q7KYM9;M0QZM1;M0QYL3 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS 1 67.845 68.043 2 0.01802 29970 20181213_JW_Orientia_Karp_1_3 64.136 32.789 2578600 0 0 2578600 0 0 0 0 0 3128 1701 2752 18961 12415 12415 1309 1 GIHPTIISESFQK Unmodified 1455.7722 0.7721789 349 B7Z9L0;B7Z2Z8;A8K3C3;P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 43.925 44.107 3 0.0025744 15648 20181213_JW_Orientia_Karp_1_1 145.23 94.091 24978000 12329000 8074300 4574700 0 0 0 0 0 3129 349 2753 18962;18963;18964 12416 12416 1 GIIENNNDFAEK Unmodified 1362.6416 0.64155866 1339 Karp_01469 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 41.84 42.141 2 0.0060516 14446 20181213_JW_Orientia_Karp_1_1 107.09 58.111 61249000 17209000 14195000 13652000 0 7019300 2095000 6907100 171440 3130 1339 2754 18965;18966;18967;18968;18969;18970;18971 12417 12417 1 GIIYIDEIDK Unmodified 1177.6231 0.62305505 1435 Karp_02393 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.706 58.956 2 0.00079878 25002 20181213_JW_Orientia_Karp_1_1 128.36 86.485 190650000 29450000 76412000 40703000 12484000 12656000 18945000 0 0 3131 1435 2755 18972;18973;18974;18975;18976;18977 12418;12419;12420;12421;12422;12423;12424 12418 7 GILAADESTGSIAK Unmodified 1331.6933 0.69325988 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;H3BPS8;H3BUH7 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 44.903 45.094 2 1.5238E-07 16084 20181213_JW_Orientia_Karp_1_1 183.33 112.94 303790000 88641000 71881000 117610000 0 10233000 15426000 0 0 3132 1546 2756 18978;18979;18980;18981;18982;18983 12425;12426;12427;12428;12429;12430 12425 6 GILELMDAIDDYIPQPTR Oxidation (M) 2075.0245 0.024506776 1176;1244 Karp_00632;Karp_00911 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 74.023 74.044 2 9.0585E-102 33931 20181213_JW_Orientia_Karp_1_3 315.21 238.08 715820000 193560000 223030000 179450000 20879000 12638000 20048000 66210000 0 3133 1176;1244 2757 18984;18985;18986;18987;18988;18989;18990 12431;12432;12433;12434;12435;12436;12437;12438;12439 12433 740 9 GILELMDAIDDYIPQPTR Unmodified 2059.0296 0.029592154 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 77.454 77.43 2 0.0023574 31242 20181213_JW_Orientia_Karp_3_2 105 54.857 527450000 215820000 0 121180000 0 62715000 46051000 79756000 1936600 3134 1176;1244 2757 18991;18992;18993;18994;18995;18996 12440;12441 12441 2 GILEQGWQADSTTR Unmodified 1560.7532 0.75323437 90 H7C3S9;E9PGT6;B2R8N1;A0A024R4D1;Q99627-2;Q99627 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 50.363 50.637 2 0.00049305 19182 20181213_JW_Orientia_Karp_1_2 151.16 102.18 48443000 16832000 13773000 13229000 4608100 0 0 0 0 3135 90 2758 18997;18998;18999;19000 12442;12443;12444 12443 3 GILFVGSGVSGGEEGAR Unmodified 1590.8002 0.80018457 593 B4DL86;B4E2U0;P52209-2;P52209;K7EMN2;K7EM49;K7EPF6 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 65.266 65.413 2 3.7032E-23 23231 20181213_JW_Orientia_Karp_1_1 216.83 151.2 191320000 36873000 26397000 29942000 16315000 21430000 21423000 36703000 2238600 3136 593 2759 19001;19002;19003;19004;19005;19006;19007;19008;19009;19010;19011;19012 12445;12446;12447;12448;12449;12450;12451;12452;12453 12445 9 GILINIFGGIMR Oxidation (M) 1318.7431 0.74312738 1121 Karp_00319 yes yes 0 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 72.653 72.715 2 0.040927 26771 20181213_JW_Orientia_Karp_3_1 92.051 57.798 18902000 4961300 2501800 0 0 5886500 0 5552500 0 3137 1121 2760 19013;19014;19015;19016 12454 12454 0 GILSGTSDLLLTFDEAEVR Unmodified 2035.0474 0.047350708 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;P18206-3 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 74.469 74.502 2 1.2606E-18 34586 20181213_JW_Orientia_Karp_1_1 210.07 144.05 39580000 19795000 16997000 0 0 0 0 2788200 0 3138 19 2761 19017;19018;19019 12455;12456;12457 12455 3 GILTTAASK Unmodified 860.49673 0.49673232 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 32.894 33.184 2 0.013408 9423 20181213_JW_Orientia_Karp_1_3 88.177 37.118 246920000 96055000 92843000 45530000 0 0 0 0 12490000 3139 1318 2762 19020;19021;19022;19023 12458;12459;12460 12460 3 GINSSDVSK Unmodified 905.44543 0.44542503 1167 Karp_00621 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 20.96 21.273 2 0.029773 3368 20181213_JW_Orientia_Karp_2_2 78.149 25.466 2975600 1243000 0 0 889390 574330 0 268850 0 3140 1167 2763 19024;19025;19026;19027 12461 12461 1 GINTLVTYDMVPEPK Oxidation (M) 1691.844 0.84402321 991 H3BNX8;P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 56.229 56.587 2 3.4165E-06 22810 20181213_JW_Orientia_Karp_1_3 171.26 112.56 107810000 32844000 30423000 20484000 10920000 6189600 5013300 1546600 393030 3141 991 2764 19028;19029;19030;19031;19032;19033;19034;19035 12462;12463;12464;12465;12466 12464 544 5 GINTLVTYDMVPEPK Unmodified 1675.8491 0.84910859 991 H3BNX8;P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 1 62.937 63.112 2 2.087E-06 27272 20181213_JW_Orientia_Karp_1_2 175.6 120.15 90623000 63265000 27358000 0 0 0 0 0 0 3142 991 2764 19036;19037 12467;12468;12469 12469 3 GIQAEEILQTYLK Unmodified 1504.8137 0.81370936 678 B4E1L5;Q5D1D5;P32455;B4DNS2;H3BNS1;Q9H0R5-4;Q9H0R5 GBP1;GBP3 Interferon-induced guanylate-binding protein 1;Guanylate-binding protein 3 yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 68.08 68.323 2 0.001433 24142 20181213_JW_Orientia_Karp_3_1 132.59 86.614 24251000 4750500 2295300 8531400 507630 0 0 5403700 2762500 3143 678 2765 19038;19039;19040;19041;19042;19043 12470;12471 12471 2 GIQNDLTK Unmodified 887.47125 0.47124585 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 30.689 31.064 2 0.017411 8876 20181213_JW_Orientia_Karp_1_1 91.853 7.6097 93167000 79473000 0 0 0 0 0 13694000 0 3144 345 2766 19044;19045;19046 12472;12473 12472 2 GISLNPEQWSQLK Unmodified 1498.778 0.77799256 711 B7Z1Z0;Q6IBA2;Q59G24;P53999 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 61.869 62.219 2 0.00023455 26870 20181213_JW_Orientia_Karp_1_2 160.72 81.233 18222000 0 8268300 0 2340400 7613300 0 0 0 3145 711 2767 19047;19048;19049 12474;12475;12476 12474 3 GISLVNLEQYSSAK Unmodified 1507.7882 0.7882229 1145 Karp_00478 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 58.542 58.862 2 7.3247E-36 25007 20181213_JW_Orientia_Karp_1_1 270.93 205.77 150940000 16184000 35221000 56961000 11925000 15266000 9229900 1954800 4193600 3146 1145 2768 19050;19051;19052;19053;19054;19055;19056;19057 12477;12478;12479;12480;12481;12482 12477 6 GISLVNLGQYSSAK Unmodified 1435.7671 0.76709352 1152;1259;1264 Karp_01552;Karp_00538;Karp_00993;Karp_01053 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 56.652 56.967 2 4.2802E-25 23383 20181213_JW_Orientia_Karp_1_2 247.67 151.5 193750000 47613000 41154000 51689000 10691000 25329000 14502000 0 2775600 3147 1152;1259;1264 2769 19058;19059;19060;19061;19062;19063;19064 12483;12484;12485;12486;12487;12488;12489 12484 7 GISLVSLGQYSK Unmodified 1250.6871 0.68705229 1448;1447;1355 Karp_02495;Karp_01675;Karp_02466 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 56.541 56.899 2 6.7537E-08 23305 20181213_JW_Orientia_Karp_1_2 192.44 142.41 217580000 41566000 66922000 29099000 33327000 19281000 27216000 47091 124430 3148 1448;1355;1447 2770 19065;19066;19067;19068;19069;19070;19071;19072;19073 12490;12491;12492;12493;12494;12495;12496;12497 12491 8 GISLVSLGQYSR Unmodified 1278.6932 0.6932003 1323 Karp_01308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 57.52 57.804 2 1.0159E-22 23644 20181213_JW_Orientia_Karp_1_3 227.94 164.52 84403000 31812000 19505000 15387000 0 6788700 10795000 116390 0 3149 1323 2771 19074;19075;19076;19077;19078;19079;19080 12498;12499;12500;12501;12502;12503;12504;12505 12501 8 GISQEQMNEFR Oxidation (M) 1353.5983 0.59831364 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;A1L0V1;H7C5W8;H0YJW3;H0YJ11;Q5ZEZ4 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 32.532 33.048 2 4.4099E-07 9363 20181213_JW_Orientia_Karp_1_2 181.87 115.18 85964000 0 61738000 0 13318000 0 0 10909000 0 3150 133 2772 19081;19082;19083;19084 12506;12507;12508;12509 12506 113 4 GISQEQMNEFR Unmodified 1337.6034 0.60339901 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;A1L0V1;H7C5W8;H0YJW3;H0YJ11;Q5ZEZ4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 40.834 41.164 2 9.197E-06 13340 20181213_JW_Orientia_Karp_1_3 175.33 100.28 171140000 64425000 50048000 42158000 4385400 0 0 10119000 0 3151 133 2772 19085;19086;19087;19088;19089 12510;12511;12512 12511 3 GISQEQMQEFR Oxidation (M) 1367.614 0.6139637 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 32.806 33.14 2 2.0645E-34 9406 20181213_JW_Orientia_Karp_1_2 256.38 162.07 243580000 58722000 58624000 88360000 16749000 2207800 0 18915000 0 3152 1509 2773 19090;19091;19092;19093;19094;19095 12513;12514;12515 12514 1114 3 GISQEQMQEFR Unmodified 1351.619 0.61904908 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 41.315 41.615 2 3.5786E-09 13598 20181213_JW_Orientia_Karp_1_3 199.33 130.49 209360000 61730000 84449000 46203000 0 0 0 16979000 0 3153 1509 2773 19096;19097;19098;19099 12516;12517;12518 12518 3 GISQTNLITTVTPEK Unmodified 1600.8672 0.8672015 399 B7Z8M8;B2RB02;B3KY28;A8K968;Q9Y2J2-3;Q9Y2J2-2;Q9Y2J2-4;Q9Y2J2;J3KT37 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 0 0 0 0 By MS/MS By matching 1 1 52.005 52.409 2 0.012061 20285 20181213_JW_Orientia_Karp_1_3 93.959 54.041 7562200 0 0 7329000 0 0 0 0 233230 3154 399 2774 19100;19101 12519 12519 1 GITGVDLFGTTDAVVK Unmodified 1591.8457 0.84573777 1704 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 67.086 67.286 2 1.5223E-05 29558 20181213_JW_Orientia_Karp_1_3 198.97 133.69 36159000 11484000 11995000 12274000 0 0 0 405480 0 3155 1704 2775 19102;19103;19104;19105 12520;12521 12521 2 GITIQSAATTCHWIK Unmodified 1685.8559 0.85592531 1094 Karp_00243 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 47.396 47.745 2 0.010278 16119 20181213_JW_Orientia_Karp_3_1 96.745 59.319 23209000 4283700 8755800 5254900 3549000 0 0 1365200 0 3156 1094 2776 19106;19107;19108;19109;19110 12522;12523 12523 2 GITIQTAHVEFISK Unmodified 1542.8406 0.84059282 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 49.931 50.233 2;3 3.4028E-25 17758 20181213_JW_Orientia_Karp_2_3 231.66 190.54 3056900000 713990000 691240000 531660000 661410000 201000000 225280000 0 32296000 3157 1176;1244 2777 19111;19112;19113;19114;19115;19116;19117;19118;19119;19120;19121;19122;19123;19124 12524;12525;12526;12527;12528;12529;12530;12531 12530 8 GITISEQQIAESLVEPVNQIIETIK Unmodified 2751.4906 0.4905909 1360 Karp_01811 yes yes 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 77.146 77.113 3 0.023677 36365 20181213_JW_Orientia_Karp_1_1 45.546 12.841 11660000 3946700 0 0 0 3183400 4530000 0 0 3158 1360 2778 19125;19126;19127 12532;12533 12532 1 GITPIHVCTLEK Unmodified 1366.7279 0.72787125 1100 Karp_00268 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 42.241 42.586 3 0.012649 13581 20181213_JW_Orientia_Karp_3_1 77.062 55.007 315360000 117110000 92109000 44114000 4602400 0 2806200 54379000 234550 3159 1100 2779 19128;19129;19130;19131;19132;19133;19134 12534;12535 12535 2 GITSVVFDR Unmodified 992.5291 0.52909508 1226 Karp_00893 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 50.701 51.003 2 0.0002044 18193 20181213_JW_Orientia_Karp_2_3 182.53 117.78 1010500000 241820000 228060000 122980000 170610000 77237000 166390000 0 3375600 3160 1226 2780 19135;19136;19137;19138;19139;19140;19141;19142 12536;12537;12538;12539;12540;12541;12542 12541 7 GIVDQSQQAYQEAFEISK Unmodified 2039.98 0.97999942 824 D0PNI1;P63104;B0AZS6;P63104-2;B7Z2E6;H0YB80;Q2F831 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 62.104 62.389 2;3 0 27050 20181213_JW_Orientia_Karp_1_1 434.95 359.06 381750000 139860000 59470000 77855000 9126100 22918000 40248000 0 32267000 3161 824 2781 19143;19144;19145;19146;19147;19148;19149;19150;19151 12543;12544;12545;12546;12547;12548;12549;12550;12551 12543 9 GIVEFSGK Unmodified 835.44397 0.44396847 367 A8K525;Q15233-2;Q15233;H7C367;C9IZL7 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 40.125 40.459 2 0.036873 13668 20181213_JW_Orientia_Karp_1_1 78.77 20.174 13199000 7460700 3759500 0 0 0 0 1978600 0 3162 367 2782 19152;19153;19154 12552 12552 1 GIVLLEELLPK Unmodified 1222.7537 0.75367529 2010 Q9Y3D6 FIS1 Mitochondrial fission 1 protein yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 74.186 74.202 2 0.00044367 34442 20181213_JW_Orientia_Karp_1_2 143.7 102.98 82406000 48526000 19872000 14008000 0 0 0 0 0 3163 2010 2783 19155;19156;19157 12553;12554;12555 12554 3 GIVLNEPSVVALIR Unmodified 1478.8821 0.8820637 1360 Karp_01811 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 69.048 69.191 2 2.9696E-12 30811 20181213_JW_Orientia_Karp_1_3 207.95 139.32 147210000 36743000 0 24392000 0 18505000 9815400 47210000 10549000 3164 1360 2784 19158;19159;19160;19161;19162;19163;19164;19165;19166 12556;12557;12558;12559;12560;12561;12562;12563;12564;12565 12560 10 GIVLSGGGSLIK Unmodified 1099.6601 0.66010926 1360 Karp_01811 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 51.732 52.077 2 0.0038759 20225 20181213_JW_Orientia_Karp_1_2 112.85 56.299 201960000 67284000 42958000 44163000 20365000 10428000 13248000 2800700 711270 3165 1360 2785 19167;19168;19169;19170;19171;19172;19173;19174 12566;12567;12568;12569;12570;12571 12567 6 GIYAYGFEK Unmodified 1046.5073 0.50729701 387 A8K7F6;P60842;J3KT12;A8K088;P60842-2;J3QLN6;J3QR64;J3KTB5;J3QL43;J3QS69;E7EQG2;Q59F68;Q14240;Q14240-2;J3QKZ9;B4E047;J3KS25;J3KT04;J3KS93;E7EMV8;Q86WD0;J3KSN7;B4E102;C9JUF0;Q59GT8;Q5JWW0;J3QQP0;E9PBH4;F8WE11;I3L3H2;A0A024R8W0;P38919 EIF4A1;EIF4A2;DKFZp566L241;EIF4A3;DDX48 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 47.07 47.416 2 0.0013008 17405 20181213_JW_Orientia_Karp_1_1 127.46 71.028 143390000 48934000 43387000 38184000 5598300 0 4296400 52414 2939300 3166 387 2786 19175;19176;19177;19178;19179;19180;19181 12572;12573;12574;12575;12576 12572 5 GIYLSTTMGPSVR Oxidation (M) 1396.7021 0.70205043 1173 Karp_00627 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.991 47.312 2 0.00052242 15953 20181213_JW_Orientia_Karp_2_2 150.04 94.931 399260000 108190000 84083000 101020000 20568000 15654000 42368000 5548700 21830000 3167 1173 2787 19182;19183;19184;19185;19186;19187;19188;19189 12577;12578;12579;12580;12581;12582 12580 728 6 GIYLSTTMGPSVR Unmodified 1380.7071 0.7071358 1173 Karp_00627 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.723 53.068 2 0.0001762 21233 20181213_JW_Orientia_Karp_1_1 185.96 108.3 224390000 64940000 58631000 54858000 12526000 14639000 10364000 6870400 1561100 3168 1173 2787 19190;19191;19192;19193;19194;19195;19196;19197 12583;12584;12585;12586;12587;12588;12589;12590;12591;12592 12584 10 GIYQSLEGAVQAGQLK Unmodified 1660.8784 0.87843489 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;E9PMV1 PLEC Plectin yes no 0 0 0 0 By MS/MS By matching 1 1 58.643 58.918 2 0.00098683 24670 20181213_JW_Orientia_Karp_1_2 128.21 60.081 27511000 0 10227000 17284000 0 0 0 0 0 3169 1803 2788 19198;19199 12593 12593 1 GKEEANAIMHAYNNNLR Unmodified 1943.9272 0.92719277 1252 Karp_00931 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 36.686 37.059 3 0.034479 11339 20181213_JW_Orientia_Karp_1_2 103.14 68.834 125840000 32126000 35513000 22445000 8972500 3963800 0 16933000 5885300 3170 1252 2789 19200;19201;19202;19203;19204;19205;19206 12594 12594 1 GKIDELANAVDEYIK Unmodified 1676.8621 0.86211612 1274 Karp_01105 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 2 2 1 2 60.889 61.206 2;3 0.0025122 23512 20181213_JW_Orientia_Karp_2_2 120.54 74.717 137620000 42932000 20661000 11359000 5334300 23298000 17812000 5746800 10477000 3171 1274 2790 19207;19208;19209;19210;19211;19212;19213;19214;19215;19216;19217;19218;19219 12595;12596;12597;12598;12599;12600;12601;12602 12599 8 GKKPDIDITGPK Unmodified 1267.7136 0.71360139 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 27.676 28.064 3 0.012362 6464 20181213_JW_Orientia_Karp_3_1 115.37 91.097 28030000 6111000 6806600 5049300 3342700 1141800 0 3334000 2244900 3172 1782 2791 19220;19221;19222;19223;19224;19225;19226 12603;12604;12605 12604 3 GKLEAIITPPPAK Unmodified 1333.7969 0.79693709 1518 O75367-2;O75367-3;O75367;D6RCF2 H2AFY Core histone macro-H2A.1;Histone H2A yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 42.762 43.092 3 0.033769 14391 20181213_JW_Orientia_Karp_1_3 77.894 45.735 80360000 37683000 25816000 12342000 848790 0 0 3670000 0 3173 1518 2792 19227;19228;19229;19230;19231 12606 12606 1 GKLPIVNEDDELVAIIAR Unmodified 1964.0942 0.094241321 710 Q6QE17;B7Z1G4;H0Y4R1;P12268;E7ETK5 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes no 0 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 66.364 66.474 3 0.013575 25980 20181213_JW_Orientia_Karp_2_2 87.669 21.334 33134000 8237700 6340000 7399100 0 7547200 3609700 0 0 3174 710 2793 19232;19233;19234;19235;19236 12607 12607 1 GLAFTDVDVDSIK Unmodified 1378.698 0.6980109 85 A0A024R462;P02751-17;P02751-3;P02751;P02751-6;P02751-5;P02751-7;P02751-15;P02751-4;P02751-11;Q6MZM7;Q68CX6;Q5CZ99;A6YID3;A6YID2;A6YID6;A6YID5 FN1;DKFZp686O12165;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 61.929 62.237 2 1.9291E-17 26423 20181213_JW_Orientia_Karp_1_3 220.82 145.16 515620000 138670000 164150000 133840000 11595000 27073000 28559000 462090 11267000 3175 85 2794 19237;19238;19239;19240;19241;19242;19243;19244;19245 12608;12609;12610;12611;12612;12613 12608 6 GLAGAVSELLR Unmodified 1084.6241 0.6240581 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 60.507 60.707 2 0.00024018 25785 20181213_JW_Orientia_Karp_1_2 153.24 66.574 57955000 31035000 5323400 18006000 0 3589800 0 0 0 3176 2016 2795 19246;19247;19248;19249 12614;12615;12616;12617 12616 4 GLALAFLGQLQK Unmodified 1257.7445 0.74450759 1323 Karp_01308 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 69.144 69.296 2 0.0012357 31531 20181213_JW_Orientia_Karp_1_1 145.16 106.85 48329000 10726000 5702400 0 0 11833000 4686000 11315000 4066500 3177 1323 2796 19250;19251;19252;19253;19254;19255 12618;12619;12620;12621;12622 12618 5 GLAPDLPEDLYHLIK Unmodified 1692.9087 0.90867238 1024 J3KMX5;P62277 RPS13 40S ribosomal protein S13 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 70.125 70.29 3 0.023548 31540 20181213_JW_Orientia_Karp_1_3 60.196 47.704 54113000 24775000 0 10710000 0 0 0 16930000 1697000 3178 1024 2797 19256;19257;19258;19259 12623;12624 12623 2 GLCAIAQAESLR Unmodified 1287.6605 0.66051996 1623 Q53G83;P23396;P23396-2;F2Z2S8;H0YCJ7;H0YF32;Q9NQS8;A7E2S3 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 49.175 49.465 2 0.00092051 18229 20181213_JW_Orientia_Karp_1_3 136.02 64.8 29828000 6056200 12745000 9563600 0 0 0 0 1462800 3179 1623 2798 19260;19261;19262;19263 12625 12625 1 GLDGYQGPDGPR Unmodified 1230.5629 0.56291441 265 A0A024RDW8;P08572 COL4A2 Collagen alpha-2(IV) chain;Canstatin yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 38.178 38.606 2 0.026833 12585 20181213_JW_Orientia_Karp_1_1 81.676 49.918 27458000 13668000 0 0 2064500 0 0 10319000 1406600 3180 265 2799 19264;19265;19266;19267 12626 12626 1 GLDPYNVLAPK Unmodified 1185.6394 0.63937381 1582 Q6FHM4;P10606;Q6FHJ9 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 2 1 1 57.092 57.413 2 0.00068325 23724 20181213_JW_Orientia_Karp_1_2 133.99 70.177 161140000 47660000 48192000 33594000 3469500 8507500 12392000 76969 7251700 3181 1582 2800 19268;19269;19270;19271;19272;19273;19274;19275;19276;19277 12627;12628;12629;12630;12631;12632;12633 12628 7 GLDSLQSWPESVK Unmodified 1444.7198 0.71980898 1423 Karp_02309 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 57.355 57.686 2 1.6093E-46 23801 20181213_JW_Orientia_Karp_1_2 270.67 190.69 92684000 32329000 16938000 23700000 0 8048600 7244600 1150000 3274700 3182 1423 2801 19278;19279;19280;19281;19282;19283;19284 12634;12635;12636;12637;12638 12635 5 GLDTLVESIR Unmodified 1101.603 0.60298831 287 A2TDT2;O95999 BCL10 B-cell lymphoma/leukemia 10 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.321 60.551 2 0.0011471 23125 20181213_JW_Orientia_Karp_2_2 140.83 52.016 27259000 12634000 0 3851700 1857600 5158600 3757100 0 0 3183 287 2802 19285;19286;19287;19288;19289;19290 12639;12640;12641;12642;12643 12642 5 GLDVDSLVIEHIQVNK Unmodified 1777.9574 0.95741349 66 J3QS96;J3QQT2;J3KRX5;A0A024R261;P18621;P18621-3;J3QLC8;P18621-2;A4D1R6;A4D1R5 RPL17;hCG_24487;LOC402695;LOC202789 60S ribosomal protein L17 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 62.299 62.58 3 0.0053581 23341 20181213_JW_Orientia_Karp_3_2 88.73 46.488 131790000 23214000 0 57938000 919260 35562000 0 0 14161000 3184 66 2803 19291;19292;19293;19294;19295 12644;12645;12646;12647 12647 4 GLEASHGVSISHR Unmodified 1348.6848 0.68476088 1242 Karp_00909 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 25.002 25.437 3 0.0013536 5874 20181213_JW_Orientia_Karp_1_3 122.46 90.205 35144000 0 0 9993900 6037400 6490800 2128100 6601300 3892700 3185 1242 2804 19296;19297;19298;19299;19300;19301 12648;12649;12650 12648 3 GLEELVK Unmodified 786.44872 0.4487195 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 45.612 45.779 2 0.023841 16073 20181213_JW_Orientia_Karp_1_2 97.473 6.696 59972000 29502000 29033000 0 0 1436800 0 0 0 3186 1520 2805 19302;19303;19304 12651;12652 12651 2 GLELEPGAGLFVAQAGGADPDK Unmodified 2111.0535 0.053498719 835 D3DSM4;D3DSM5;P39060-2;P39060-1;P39060 COL18A1 Collagen alpha-1(XVIII) chain;Endostatin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 69.487 69.667 2 3.3683E-06 31172 20181213_JW_Orientia_Karp_1_3 164.82 130.72 74469000 0 29611000 16535000 335810 3257600 2405900 16679000 5644700 3187 835 2806 19305;19306;19307;19308;19309;19310;19311 12653;12654 12654 2 GLEQQLDK Unmodified 929.48181 0.48181054 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 32.735 33.019 2 0.0041676 8870 20181213_JW_Orientia_Karp_2_3 145.16 62.915 506200000 84417000 210330000 159620000 0 12198000 13999000 25631000 0 3188 1166 2807 19312;19313;19314;19315;19316;19317;19318;19319;19320 12655;12656;12657;12658;12659;12660;12661;12662;12663 12661 9 GLFDEYGSK Unmodified 1014.4658 0.46582612 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71;B4DHT9;Q58FF2;Q58FF3 TRA1;HEL-S-125m;HSP90B1;GRP94c;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 49.53 49.823 2 0.013408 19005 20181213_JW_Orientia_Karp_1_1 88.177 54.004 57381000 20990000 0 21322000 6123500 3857300 3778800 0 1309700 3189 1598 2808 19321;19322;19323;19324;19325;19326 12664 12664 1 GLFIIDDK Unmodified 919.50148 0.50148335 1773;1008 Q06830;B2R4P2;H7C3T4;V9HW63;Q13162 PRDX1;PRDX4;HEL-S-97n Peroxiredoxin-1;Peroxiredoxin-4 no no 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 59.053 59.303 2 0.009836 22722 20181213_JW_Orientia_Karp_2_1 104.37 14.816 87369000 20532000 32752000 3255200 3355100 4667900 22807000 0 0 3190 1773;1008 2809 19327;19328;19329;19330;19331;19332 12665;12666 12665 2 GLGEMNSDQLWETTLDPENR Oxidation (M) 2320.0278 0.027754253 1262 Karp_01022 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 64.19 64.32 2 7.6349E-61 28277 20181213_JW_Orientia_Karp_1_1 266.07 210.09 50259000 13466000 10438000 16641000 0 5426400 4287500 0 0 3191 1262 2810 19333;19334;19335;19336;19337 12667;12668;12669;12670;12671 12667 822 5 GLGEMNSDQLWETTLDPENR Unmodified 2304.0328 0.032839631 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 68.784 68.96 2 1.6007E-28 31101 20181213_JW_Orientia_Karp_1_1 253.06 197.16 47865000 10630000 9009500 16277000 1455700 0 0 7938900 2554300 3192 1262 2810 19338;19339;19340;19341;19342;19343 12672;12673;12674;12675;12676;12677 12672 6 GLGEMNSDQLWETTLDPENR Oxidation (M);Deamidation (NQ) 2321.0118 0.011769838 1262 Karp_01022 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 69.13 69.274 2 2.4099E-11 31209 20181213_JW_Orientia_Karp_1_1 171.08 119.94 21579000 3758500 4201000 4027700 0 1386100 1836500 4251100 2117900 3193 1262 2810 19344;19345;19346;19347;19348;19349;19350 12678;12679;12680;12681;12682 12678 672 822 5 GLGLTLGNSLR Unmodified 1099.635 0.63495714 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.561 54.877 2 1.7161E-25 21720 20181213_JW_Orientia_Karp_1_3 246.93 141.8 400140000 71781000 149740000 89198000 13371000 29139000 44936000 0 1983800 3194 1219 2811 19351;19352;19353;19354;19355;19356;19357 12683;12684;12685;12686;12687;12688 12685 6 GLGLTLGNSLR Deamidation (NQ) 1100.619 0.61897272 1219 Karp_00886 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 59.864 60.047 2 0.00099271 25309 20181213_JW_Orientia_Karp_1_2 139.43 78.605 53348000 23324000 15623000 14401000 0 0 0 0 0 3195 1219 2811 19358;19359;19360;19361 12689;12690;12691;12692 12690 620 4 GLGTDEDSLIEIICSR Unmodified 1776.8564 0.85637882 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YM50;H0YKS4;B4DNH8;H0YNP5;B3KRQ1;H0YN28;H0YL33;H0YMM1;H0YNA0;H0YN52;H0YLE2 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.596 72.665 2 9.787E-28 29660 20181213_JW_Orientia_Karp_2_3 282.21 209.68 1706100000 423570000 221660000 270870000 86454000 88375000 96605000 301280000 217300000 3196 124 2812 19362;19363;19364;19365;19366;19367;19368;19369 12693;12694;12695;12696;12697;12698;12699;12700 12698 8 GLGTDEDTIIDIITHR Unmodified 1767.9003 0.90029254 1570 P08133-2;P08133;E5RK69;B7Z582;A8K3Q7 ANXA6 Annexin A6;Annexin yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 69.093 69.252 3 0.035223 27496 20181213_JW_Orientia_Karp_2_2 49.265 16 31843000 9766100 2950300 3488400 0 6626100 0 6323200 2689000 3197 1570 2813 19370;19371;19372;19373;19374;19375 12701;12702 12702 2 GLGTDEESILTLLTSR Unmodified 1703.8941 0.89414453 1573 V9HWE0;P08758;E9PHT9;B4DNG6 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 74.488 74.518 2;3 5.3654E-95 27698 20181213_JW_Orientia_Karp_3_1 309.35 207.29 873370000 240110000 208340000 202270000 22870000 44015000 35086000 108650000 12033000 3198 1573 2814 19376;19377;19378;19379;19380;19381;19382;19383;19384;19385 12703;12704;12705;12706;12707;12708;12709;12710;12711;12712 12711 9 GLHQSIEEFR Unmodified 1214.6044 0.60438529 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;E9PMV1 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 34.907 35.207 3 0.021546 10929 20181213_JW_Orientia_Karp_1_1 57.836 23.304 39132000 9847900 19848000 8370300 0 0 0 1065300 0 3199 1803 2815 19386;19387;19388;19389 12713;12714 12713 2 GLHVVEVTYDDVPIPNSPFK Unmodified 2225.1368 0.13683442 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 64.522 64.652 3 1.5601E-05 28252 20181213_JW_Orientia_Karp_1_2 137.52 89.044 216440000 61990000 60457000 60489000 0 21326000 12177000 0 0 3200 1520 2816 19390;19391;19392;19393;19394 12715;12716;12717;12718;12719;12720;12721;12722 12717 8 GLIDYDTGIR Unmodified 1121.5717 0.57168818 892 F8W9J4;E9PEB9;Q03001;F6QMI7;Q03001-9 DST Dystonin yes no 0 0 0 0 By matching By MS/MS 1 1 30.548 30.647 3 0.035633 8185 20181213_JW_Orientia_Karp_1_3 59.35 8.6464 16590000 6743400 0 9846700 0 0 0 0 0 3201 892 2817 19395;19396 12723 12723 1 GLKPGVVYEGQLISIQQYGHQEVTR Unmodified 2798.4715 0.47152721 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 52.551 52.702 4 0.0015869 20453 20181213_JW_Orientia_Karp_1_3 72.864 53.984 83248000 33497000 0 32554000 0 7230700 9967300 0 0 3202 85 2818 19397;19398;19399;19400 12724 12724 1 GLLDDLR Unmodified 800.43922 0.43921744 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 55.775 56.041 2 0.040141 22472 20181213_JW_Orientia_Karp_1_3 83.287 6.4406 15856000 0 2729000 9287800 0 0 3838700 0 0 3203 224 2819 19401;19402;19403 12725 12725 1 GLLDITDNTVTEK Unmodified 1417.73 0.73003931 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 58.622 58.879 2 4.3354E-46 24562 20181213_JW_Orientia_Karp_1_2 312.78 191.91 908070000 302970000 159890000 204050000 64772000 74693000 84364000 17328000 0 3204 1449 2820 19404;19405;19406;19407;19408;19409;19410;19411;19412 12726;12727;12728;12729;12730;12731;12732;12733;12734;12735 12728 10 GLLDITDNTVTEK Deamidation (NQ) 1418.7141 0.7140549 1449 Karp_02529 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 60.266 60.553 2 3.8682E-07 25990 20181213_JW_Orientia_Karp_1_1 187.85 98.775 57777000 12852000 14037000 13926000 5531800 4009700 5948300 0 1471700 3205 1449 2820 19413;19414;19415;19416;19417;19418;19419 12736;12737;12738 12736 970 3 GLLDSLLFDNNR Unmodified 1375.7096 0.70957864 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 74.563 74.595 2 1.1144E-11 34659 20181213_JW_Orientia_Karp_1_2 238.01 167.61 319040000 110630000 55679000 91053000 1400200 16576000 8889300 21868000 12948000 3206 1170 2821 19420;19421;19422;19423;19424;19425;19426;19427 12739;12740;12741;12742;12743;12744 12740 6 GLLDSLLFDNNR Deamidation (NQ) 1376.6936 0.69359423 1170 Karp_00624 yes yes 0 1 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 75.78 75.787 2 0.0027189 35538 20181213_JW_Orientia_Karp_1_2 128.01 86.906 75151000 22455000 9079500 21556000 3403900 5955300 3771800 8928800 0 3207 1170 2821 19428;19429;19430;19431;19432;19433;19434 12745;12746 12745 570 2 GLLLYGPPGTGK Unmodified 1171.6601 0.66010926 1047 K7EM02;K7EIJ8;Q8IYT4-2;Q8IYT4 KATNAL2 Katanin p60 ATPase-containing subunit A-like 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 53.773 54.099 2 0.0026264 21922 20181213_JW_Orientia_Karp_1_1 117.53 0 171670000 72292000 34049000 41332000 9494300 0 14288000 0 217830 3208 1047 2822 19435;19436;19437;19438;19439;19440 12747;12748;12749 12747 3 GLLMLVSSR Oxidation (M) 990.5532 0.55320134 1128 Karp_00331 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 53.934 54.249 2 0.00066319 19720 20181213_JW_Orientia_Karp_2_2 141.52 78.212 124840000 31649000 23355000 11782000 11684000 16407000 27481000 0 2483300 3209 1128 2823 19441;19442;19443;19444;19445;19446;19447 12750;12751;12752;12753;12754;12755 12753 665 6 GLLMLVSSR Unmodified 974.55829 0.55828672 1128 Karp_00331 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 57.951 58.216 2 0.00080262 24658 20181213_JW_Orientia_Karp_1_1 139.88 86.323 63266000 39831000 0 18060000 0 3978400 0 0 1396400 3210 1128 2823 19448;19449;19450;19451 12756;12757 12756 2 GLLQTEPQNNQAK Unmodified 1439.7369 0.73685603 2010 Q9Y3D6 FIS1 Mitochondrial fission 1 protein yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.047 35.404 2 2.5833E-34 10415 20181213_JW_Orientia_Karp_1_3 247.22 185.53 64568000 10598000 20562000 16533000 2278600 3412500 1638300 6598000 2946600 3211 2010 2824 19452;19453;19454;19455;19456;19457;19458;19459 12758;12759;12760;12761;12762;12763;12764;12765;12766;12767 12761 10 GLLSDSMTDVPVDTGVAAR Oxidation (M) 1918.9306 0.93060639 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q53GA0;Q68E05;O43399-2;O43399-4;O43399-3 TPD52L2;DKFZp686A1765 Tumor protein D54 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.244 57.494 2 6.7356E-24 24035 20181213_JW_Orientia_Karp_1_1 212.55 169.05 96227000 18032000 27710000 16026000 11520000 11511000 11428000 0 0 3212 1507 2825 19460;19461;19462;19463;19464;19465;19466 12768;12769;12770;12771;12772;12773;12774 12768 1110 7 GLLSDSMTDVPVDTGVAAR Unmodified 1902.9357 0.93569177 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q53GA0;Q68E05;O43399-2;O43399-4;O43399-3 TPD52L2;DKFZp686A1765 Tumor protein D54 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 63.932 64.095 2 6.7143E-07 27545 20181213_JW_Orientia_Karp_1_3 197.19 136.08 32779000 0 9644300 14438000 0 3699000 4997600 0 0 3213 1507 2825 19467;19468;19469;19470 12775;12776 12776 2 GLLTYTSWEDALSR Unmodified 1610.794 0.79403656 585 B4DJ81;E5KRK5;P28331-3;P28331-4;P28331-5;P28331;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 1 69.474 69.549 2 0.00042819 31308 20181213_JW_Orientia_Karp_1_2 147.62 63.741 7320300 3005200 4315100 0 0 0 0 0 0 3214 585 2826 19471;19472 12777;12778;12779 12778 3 GLNIMEFCK Oxidation (M) 1126.5151 0.51510128 1174 Karp_00628 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.341 48.642 2 0.0010285 16583 20181213_JW_Orientia_Karp_2_2 128.38 74.226 156840000 31339000 41912000 24057000 20799000 8157600 9621600 0 20954000 3215 1174 2827 19473;19474;19475;19476;19477;19478;19479 12780;12781;12782;12783;12784;12785;12786 12784 730 7 GLNIMEFCK Unmodified 1110.5202 0.52018666 1174 Karp_00628 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 56.234 56.501 2 0.0013986 23084 20181213_JW_Orientia_Karp_1_2 126.07 59.074 152130000 58684000 30680000 34220000 11156000 8574300 8818600 0 0 3216 1174 2827 19480;19481;19482;19483;19484;19485 12787;12788;12789 12788 3 GLPFLDLIQEGNIGLMK Oxidation (M) 1873.0019 0.0019208405 1398 Karp_02184 yes yes 0 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 75.815 75.834 2 1.4824E-06 28490 20181213_JW_Orientia_Karp_3_1 157.38 113.84 62844000 17365000 8417300 13440000 2420100 3332800 2159300 8651100 7058700 3217 1398 2828 19486;19487;19488;19489;19490;19491;19492;19493 12790;12791 12791 1002 2 GLPMNNLSSNESQSR Oxidation (M) 1648.7475 0.74749707 2046 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 49.429 49.742 2 0.018697 18511 20181213_JW_Orientia_Karp_1_2 83.045 23.114 237120000 67697000 97930000 29131000 20109000 10650000 11536000 66110 0 + 3218 2046 2829 19494;19495;19496;19497;19498;19499;19500;19501 12792 12792 1560 1 GLQAQIASSGLTVEVDAPK Unmodified 1883 6.5851E-06 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 59.179 59.469 2;3 7.1183E-43 24976 20181213_JW_Orientia_Karp_1_2 251.28 210.8 63358000 16580000 10789000 13943000 7294300 7105200 3501000 0 4146300 3219 208 2830 19502;19503;19504;19505;19506;19507;19508;19509;19510;19511;19512;19513;19514 12793;12794;12795;12796;12797;12798;12799;12800 12795 7 GLQCNEGIQRMTPK 2 Deamidation (NQ) 1632.76 0.75997601 694 E5RIV9;B5A954;Q02763-3;Q02763-2 TEK yes no 0 2 0 1 By MS/MS 1 66.013 66.261 3 0.033373 26356 20181213_JW_Orientia_Karp_2_1 62.732 22.217 0 0 0 0 0 0 0 0 0 3220 694 2831 19515 12801 12801 1585;1586 1 GLQQQNSDWYLK Unmodified 1478.7154 0.7153923 235 A4QPB0;A0A024RC65;P46940;Q6P1N4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 48.123 48.433 2 0.0012443 18126 20181213_JW_Orientia_Karp_1_1 130.98 80.788 71565000 32817000 0 30046000 5180800 2835000 0 687050 0 3221 235 2832 19516;19517;19518;19519;19520;19521 12802;12803;12804;12805;12806;12807 12803 6 GLQTSQDAR Unmodified 974.47812 0.47812214 1636 Q53G71;V9HW88;P27797;B4DHR1 HEL-S-99n;CALR Calreticulin yes no 0 0 0 0 By MS/MS By matching 1 1 19.672 19.796 2 0.0024517 3954 20181213_JW_Orientia_Karp_1_1 116.37 41.182 2753100 1979300 0 0 773830 0 0 0 0 3222 1636 2833 19522;19523 12808 12808 1 GLSAYPMLMNK Oxidation (M) 1239.5992 0.59916526 1282 Karp_01118 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 48.812 49.087 2 0.0070293 18544 20181213_JW_Orientia_Karp_1_1 98.582 69.412 19127000 2884100 6666900 5772900 3802700 0 0 0 0 3223 1282 2834 19524;19525;19526;19527 12809;12810;12811 12809 844;845 3 GLSFGADDYITK Unmodified 1285.619 0.6190323 1321 Karp_01283 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.755 55.135 2 5.1453E-05 21829 20181213_JW_Orientia_Karp_1_3 166.66 109.31 425420000 0 0 277150000 62575000 46389000 38845000 462490 0 3224 1321 2835 19528;19529;19530;19531;19532;19533;19534;19535 12812;12813;12814;12815;12816;12817;12818 12814 7 GLSFGADDYITKPFDSDELSAR Unmodified 2403.123 0.12303485 1321 Karp_01283 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 64.71 64.911 3 3.5693E-05 25656 20181213_JW_Orientia_Karp_2_1 126.29 86.39 1046400000 329580000 139540000 196120000 30813000 238310000 101790000 0 10201000 3225 1321 2836 19536;19537;19538;19539;19540;19541;19542 12819;12820;12821;12822;12823;12824 12822 6 GLSQSALPYR Unmodified 1090.5771 0.57710791 1024 J3KMX5;P62277;E9PS50 RPS13 40S ribosomal protein S13 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 41.606 41.896 2 0.0021912 14376 20181213_JW_Orientia_Karp_1_1 114.4 61.615 332380000 119780000 94721000 82160000 0 0 1597400 34124000 0 3226 1024 2837 19543;19544;19545;19546;19547;19548 12825;12826;12827;12828;12829;12830 12825 5 GLTEFVEPIIQIK Unmodified 1485.8443 0.84428121 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 72.122 72.216 2 1.4214E-11 33128 20181213_JW_Orientia_Karp_1_2 205.13 131.9 230100000 38518000 28553000 52183000 7481400 23062000 14785000 51296000 14222000 3227 1789 2838 19549;19550;19551;19552;19553;19554;19555;19556;19557 12831;12832;12833;12834;12835;12836;12837;12838 12832 8 GLTPSQIGVILR Unmodified 1252.7503 0.75032125 1024 J3KMX5;P62277 RPS13 40S ribosomal protein S13 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 60.583 60.783 2 0.031061 25863 20181213_JW_Orientia_Karp_1_2 79.07 30.979 82704000 31804000 14966000 34427000 0 0 1505600 0 0 3228 1024 2839 19558;19559;19560;19561 12839 12839 1 GLTSVINQK Unmodified 958.54475 0.54474515 1563 Q5U077;P07195 LDHB L-lactate dehydrogenase;L-lactate dehydrogenase B chain yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 38.001 38.301 2 0.030142 12041 20181213_JW_Orientia_Karp_1_2 77.923 33.528 13781000 7764400 4634300 0 1382500 0 0 0 0 3229 1563 2840 19562;19563;19564 12840 12840 1 GLVAVITGGASGLGLATAER Unmodified 1812.0105 0.010511692 1844 Q5H928;Q99714-2;Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 68.519 68.746 2 0.0082881 24355 20181213_JW_Orientia_Karp_3_1 89.466 58.638 21012000 8591100 0 7218000 688850 1960800 0 1689100 864090 3230 1844 2841 19565;19566;19567;19568;19569;19570 12841 12841 1 GLVEPVDVVDNADGTQTVNYVPSR Unmodified 2543.2504 0.25036063 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 64.433 64.56 2;3 6.2045E-06 28407 20181213_JW_Orientia_Karp_1_1 120.66 77.982 359380000 107050000 119910000 91493000 0 30187000 10740000 0 0 3231 1615 2842 19571;19572;19573;19574;19575;19576;19577;19578;19579 12842;12843;12844;12845;12846 12842 5 GLVEPVDVVDNADGTQTVNYVPSR Deamidation (NQ) 2544.2344 0.23437621 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 65.813 66.001 3 9.1053E-06 28941 20181213_JW_Orientia_Karp_1_2 127.96 96.358 40950000 12639000 18956000 0 0 0 3312600 6042500 0 3232 1615 2842 19580;19581;19582;19583 12847;12848;12849 12849 1075 3 GLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVK Oxidation (M);Deamidation (NQ) 3505.6559 0.65589468 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 1 1 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 60.597 60.847 3 0.0095463 23642 20181213_JW_Orientia_Karp_2_1 51.758 19.862 59930000 23637000 15219000 18394000 2680500 0 0 0 0 3233 1520 2843 19584;19585;19586;19587 12850;12851 12851 1022 1128 2 GLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVK Deamidation (NQ) 3489.661 0.66098006 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 1 0 0 By MS/MS By matching 1 1 63.729 63.903 3 0.0022919 27798 20181213_JW_Orientia_Karp_1_2 60.517 37.862 41057000 0 17400000 23657000 0 0 0 0 0 3234 1520 2843 19588;19589 12852 12852 1022 1 GLVGEIIK Unmodified 827.51165 0.5116541 1620 Q6FHN3;Q32Q12;P22392;P22392-2;E7ERL0;J3KPD9;P15531;P15531-2;C9K028;E5RHP0 NME2;NME1-NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 48.96 49.209 2 0.025399 17016 20181213_JW_Orientia_Karp_2_1 85.212 14.299 37245000 9378000 9062300 2576500 12488000 3739400 0 0 0 3235 1620 2844 19590;19591;19592;19593;19594 12853 12853 1 GLVGPELHDR Unmodified 1091.5724 0.57235688 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;Q96IE3 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS 1 34.457 34.457 3 0.031816 10539 20181213_JW_Orientia_Karp_1_1 105.4 44.807 0 0 0 0 0 0 0 0 0 3236 1803 2845 19595 12854 12854 1 GLVLGIYSK Unmodified 948.56442 0.56441796 1639 V9HW38;P28838-2;P28838;H0Y983 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 53.37 53.633 2 0.0061367 19477 20181213_JW_Orientia_Karp_2_1 101.72 64.628 40614000 14202000 0 0 5522500 7798300 13092000 0 0 3237 1639 2846 19596;19597;19598;19599 12855;12856 12855 2 GLVLIAFSQYLQQCPFDEHVK Unmodified 2491.257 0.25696633 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.863 72.927 3 5.4064E-08 29767 20181213_JW_Orientia_Karp_2_1 151.58 93.294 696800000 52072000 88132000 49966000 6350600 82002000 71166000 347110000 0 + 3238 792 2847 19600;19601;19602;19603;19604;19605;19606 12857;12858;12859;12860;12861;12862;12863 12860 7 GLVVDMDGFEEER Oxidation (M) 1510.661 0.66097347 628 P49588;B4DR45 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 51.386 51.646 2 0.010791 19753 20181213_JW_Orientia_Karp_1_2 94.363 56.666 27526000 7257500 10165000 5809800 0 2265400 1185400 0 842720 3239 628 2848 19607;19608;19609;19610;19611;19612 12864;12865 12865 389 2 GLVVDMDGFEEER Unmodified 1494.6661 0.66605885 628 P49588;B4DR45 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 60.982 61.349 2 0.019678 26237 20181213_JW_Orientia_Karp_1_2 86.463 56.324 15951000 0 9899800 5589700 0 0 0 461680 0 3240 628 2848 19613;19614;19615 12866;12867 12866 2 GLYDDLQASPQLQLNELENK Unmodified 2287.1332 0.1332056 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 68.701 68.906 2;3 6.6482E-148 30491 20181213_JW_Orientia_Karp_1_3 341.06 250.27 338630000 65904000 52604000 32758000 19965000 47275000 36670000 57554000 25901000 3241 1428 2849 19616;19617;19618;19619;19620;19621;19622;19623;19624;19625;19626;19627;19628;19629;19630;19631 12868;12869;12870;12871;12872;12873;12874;12875;12876;12877 12871 10 GLYDGPVCEVSVTPK Unmodified 1619.7865 0.78650834 1814 Q53ET2;Q59GB4;Q16555-2;Q16555;Q8NAN9 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 54.562 54.903 2 0.0018584 22379 20181213_JW_Orientia_Karp_1_1 125.28 72.493 37249000 7337400 11571000 14809000 2287300 0 0 0 1244800 3242 1814 2850 19632;19633;19634;19635;19636 12878;12879;12880;12881;12882 12878 5 GLYLETEAGYYK Unmodified 1405.6765 0.67654718 1466;1549 L8E853;A8K7V7;B4DNX0;P04275-2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By matching By matching 1 1 1 51.512 51.846 2 0.0024909 20403 20181213_JW_Orientia_Karp_1_1 118.03 72.38 18604000 4749500 12466000 0 0 0 0 1388000 0 3243 1466;1549 2851 19637;19638;19639 12883 12883 1 GMGPGTPAGYGR Oxidation (M) 1135.508 0.50804206 1622 Q9BSV4;Q86VG2;P23246 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 28.525 28.846 2 0.007276 7418 20181213_JW_Orientia_Karp_1_2 99.815 72.334 39012000 17182000 6158200 6000800 4013500 2012000 1612200 2032700 0 3244 1622 2852 19640;19641;19642;19643;19644;19645;19646 12884;12885;12886;12887;12888;12889 12885 1246 6 GMLEPVQRPDVVLVGAGYR Oxidation (M) 2071.0884 0.088444437 195 A0A024RAB6 HSPG2 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.807 54.122 3 0.00015056 21202 20181213_JW_Orientia_Karp_1_3 136.01 99.821 153640000 62892000 31279000 30407000 7981300 7108800 13086000 0 880730 3245 195 2853 19647;19648;19649;19650;19651;19652;19653 12890;12891;12892 12892 149 3 GMLNVMLNELTPELNENLGLK 2 Oxidation (M) 2373.192 0.19198281 1107 Karp_00285 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 2 1 2 2 1 71.364 71.449 2;3 4.0797E-22 32562 20181213_JW_Orientia_Karp_1_2 200 156.2 555560000 114200000 85526000 61728000 17019000 36919000 49546000 144910000 45715000 3246 1107 2854 19654;19655;19656;19657;19658;19659;19660;19661;19662;19663;19664;19665;19666 12893;12894;12895;12896;12897;12898 12894 627;628 6 GMLNVMLNELTPELNENLGLK 2 Oxidation (M);Deamidation (NQ) 2374.176 0.17599839 1107 Karp_00285 yes yes 0 1 2 0 By MS/MS By matching By matching By matching 1 1 1 1 72.487 72.562 3 0.0098849 33309 20181213_JW_Orientia_Karp_1_1 77.037 36.181 89415000 52470000 8265300 10306000 0 0 0 18374000 0 3247 1107 2854 19667;19668;19669;19670 12899 12899 465;466;467 627;628 1 GMLNVMLNELTPELNENLGLK Unmodified 2341.2022 0.20215357 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 75.529 75.54 2;3 6.0904E-12 30893 20181213_JW_Orientia_Karp_2_3 222.57 166.91 443320000 144830000 47186000 104090000 8314300 28504000 13221000 97169000 0 3248 1107 2854 19671;19672;19673;19674;19675;19676;19677;19678;19679 12900;12901;12902;12903;12904;12905;12906 12905 7 GMLNVMLNELTPELNENLGLK Deamidation (NQ) 2342.1862 0.18616915 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 3 1 1 1 75.9 75.895 2;3 2.7818E-16 35907 20181213_JW_Orientia_Karp_1_2 180.74 114.34 113590000 44719000 24809000 32482000 0 4709600 1705100 5170300 0 3249 1107 2854 19680;19681;19682;19683;19684;19685;19686;19687;19688;19689;19690 12907;12908;12909;12910;12911 12909 465;466;467 3 GMLNVMLNELTPELNENLGLK Oxidation (M) 2357.1971 0.19706819 1107 Karp_00285 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.194 73.244 3 1.2311E-07 27056 20181213_JW_Orientia_Karp_3_1 150.61 93.895 399670000 148770000 39137000 70990000 0 19096000 39564000 82118000 0 3250 1107 2854 19691;19692;19693;19694;19695;19696;19697 12912;12913;12914;12915;12916;12917 12917 627;628 6 GMNDDIVISYNDPLGIPIDDK Oxidation (M) 2319.094 0.094042904 1428 Karp_02381 yes yes 0 0 1 0 By matching By MS/MS 1 1 72.903 73.027 2 0.0366 33357 20181213_JW_Orientia_Karp_1_3 57.414 23.825 21706000 0 9995700 11710000 0 0 0 0 0 3251 1428 2855 19698;19699 12918 12918 1 GMQDLVEDFK Oxidation (M) 1196.5383 0.53833914 341 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6 KRT6A Keratin, type II cytoskeletal 6A yes no 0 0 1 0 By MS/MS 1 47.4 48.01 2 0.0022006 15436 20181213_JW_Orientia_Karp_3_2 112.13 60.853 8334500 0 0 0 0 0 0 0 8334500 + 3252 341 2856 19700 12919 12919 229 1 GMQILHSDR Oxidation (M) 1071.5131 0.51312744 1073 Karp_00049 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 20.626 20.907 2 0.011807 4404 20181213_JW_Orientia_Karp_1_1 87.696 43.347 2508400 918810 534640 0 0 342200 280070 432690 0 3253 1073 2857 19701;19702;19703;19704;19705 12920;12921 12920 591 2 GMTTVDDFFQGTK Oxidation (M) 1461.6446 0.64459513 1795 Q6DEN2;Q14195-2;Q8IXW6;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.687 53.032 2 1.1733E-05 21180 20181213_JW_Orientia_Karp_1_1 177.57 115.8 39865000 6145800 7009000 11144000 4279700 4112600 3068700 3120400 984950 3254 1795 2858 19706;19707;19708;19709;19710;19711;19712;19713 12922;12923;12924;12925;12926;12927 12922 1439 6 GMTTVDDFFQGTK Unmodified 1445.6497 0.6496805 1795 Q6DEN2;Q14195-2;Q8IXW6;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 By MS/MS 1 58.687 59.037 2 0.015285 24671 20181213_JW_Orientia_Karp_1_2 105.03 69.491 0 0 0 0 0 0 0 0 0 3255 1795 2858 19714 12928 12928 1 GMVFGIPDGVLELVPQR Oxidation (M) 1841.971 0.97095506 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 74.445 74.478 2 0.0021422 34581 20181213_JW_Orientia_Karp_1_2 107.97 66.486 42733000 12355000 13964000 7891600 1119200 1549100 0 5854000 0 3256 195 2859 19715;19716;19717;19718;19719;19720 12929;12930 12929 150 2 GMVFGIPDGVLELVPQR Unmodified 1825.976 0.97604044 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 75.629 75.655 2 0.02223 35086 20181213_JW_Orientia_Karp_1_3 81.92 49.59 57173000 30927000 0 14901000 2185200 1404700 0 5460600 2294900 3257 195 2859 19721;19722;19723;19724;19725;19726 12931 12931 1 GMYDGPVFDLTTTPK Oxidation (M) 1656.7705 0.77052392 1795 Q6DEN2;Q14195-2;Q8IXW6;Q14195;B4DLZ4;H0YBT4 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 60.488 60.763 2 0.0026207 21130 20181213_JW_Orientia_Karp_3_1 116.24 77.488 24660000 9973200 6207300 7619300 0 0 0 859930 0 3258 1795 2860 19727;19728;19729;19730 12932 12932 1440 1 GNASVSDIDMLLDVTK Oxidation (M) 1692.824 0.82401605 1409 Karp_02226 yes yes 0 0 1 0 By MS/MS By matching By matching 1 1 1 66.192 66.426 2 0.017161 29648 20181213_JW_Orientia_Karp_1_1 83.877 51.018 9745600 5363100 3613400 0 0 0 0 769090 0 3259 1409 2861 19731;19732;19733 12933 12933 1016 1 GNDQVAISSKLETR 2 Deamidation (NQ) 1518.7526 0.75256567 1875 Q6ZNQ5 yes yes 0 2 0 1 By matching By MS/MS 1 1 67.134 67.435 2 0.016511 23622 20181213_JW_Orientia_Karp_3_1 127.51 37.836 740530000 0 676330000 0 0 0 0 64192000 0 3260 1875 2862 19734;19735 12934 12934 1184;2015 0 GNEIVLSAGSTPR Unmodified 1299.6783 0.67827852 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 42.945 43.255 2 0.014902 15120 20181213_JW_Orientia_Karp_1_1 91.307 42.309 19189000 7046800 5989900 3587800 0 565660 0 1708000 290500 3261 1796 2863 19736;19737;19738;19739;19740;19741 12935 12935 1 GNFGGSFAGSFGGAGGHAPGVAR Unmodified 2033.9456 0.94562002 1701 P52272-2;P52272;Q7KYM9;Q59ES8;Q6P2D7;M0R2I7;M0QY96 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.203 47.549 3 0.0031579 17410 20181213_JW_Orientia_Karp_1_1 114.9 87.872 180360000 42058000 65506000 34168000 4981800 14181000 6921800 1394000 11153000 3262 1701 2864 19742;19743;19744;19745;19746;19747;19748;19749 12936;12937 12936 2 GNFLSLLQIPIR Unmodified 1369.8082 0.80817048 1172 Karp_00626 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 74.693 74.722 2 5.0255E-11 34406 20181213_JW_Orientia_Karp_1_3 211.86 149.28 339920000 118400000 75121000 98021000 0 9141600 7058800 13163000 19016000 3263 1172 2865 19750;19751;19752;19753;19754;19755;19756 12938;12939;12940;12941;12942;12943 12939 6 GNFLSLLQIPIRR Unmodified 1525.9093 0.9092815 1172 Karp_00626 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 68.752 68.911 3 0.0025409 31237 20181213_JW_Orientia_Karp_1_1 109.39 77.681 43527000 27627000 2967600 7617000 0 1284300 3044100 0 987200 3264 1172 2866 19757;19758;19759;19760;19761;19762 12944;12945;12946 12944 3 GNFLSRENKVQVISESDR Acetyl (Protein N-term);3 Deamidation (NQ) 2122.0178 0.017841494 778 C9JSP6 CDC14A yes yes 1 3 0 2 By matching By MS/MS 1 1 35.036 35.211 3 0.034071 10394 20181213_JW_Orientia_Karp_1_2 50.04 6.6572 6998100 4162500 2835700 0 0 0 0 0 0 3265 778 2867 19763;19764 12947 12947 1639 1 GNFNYIEFTR Unmodified 1259.5935 0.59348625 1831;1498 O14950;Q53HL1;J3QRS3;P19105 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.944 55.317 2 3.0661E-07 22238 20181213_JW_Orientia_Karp_1_2 192.91 120.03 1603800000 570890000 290390000 411670000 154500000 0 159110000 8480600 8759000 3266 1498;1831 2868 19765;19766;19767;19768;19769;19770;19771;19772 12948;12949;12950;12951;12952;12953;12954;12955 12949 8 GNFNYIEFTR Deamidation (NQ) 1260.5775 0.57750184 1831;1498 O14950;Q53HL1;J3QRS3;P19105 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A no no 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 2 2 2 60.155 60.424 2 7.5403E-09 24482 20181213_JW_Orientia_Karp_2_2 207.83 126.64 177350000 24578000 50360000 49511000 9208500 23084000 13963000 0 6643500 3267 1498;1831 2868 19773;19774;19775;19776;19777;19778;19779;19780;19781;19782;19783;19784;19785;19786 12956;12957;12958;12959;12960;12961;12962;12963;12964;12965 12962 1008;1009 9 GNFNYVEFTR Unmodified 1245.5778 0.57783619 1626 Q71U02;Q6IBG1;P24844;P24844-2 MYL9 Myosin regulatory light polypeptide 9 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 51.601 51.861 2 0.0035592 18519 20181213_JW_Orientia_Karp_2_1 107.55 72.376 74803000 22806000 12314000 0 16273000 9309300 14100000 0 0 3268 1626 2869 19787;19788;19789;19790;19791 12966;12967;12968 12967 3 GNGGAVLSMALPFQPEQR Oxidation (M);3 Deamidation (NQ) 1889.8829 0.88292792 949 Q4AE62-3;G5EA49;Q4AE62-2;H7BYJ5;Q4AE62;G1UFN1 GTDC1 Glycosyltransferase-like domain-containing protein 1 yes no 0 3 1 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 51.92 52.246 3 0.0096474 18984 20181213_JW_Orientia_Karp_2_3 81.992 27.997 142270000 32116000 17846000 0 46344000 12757000 31613000 1599000 0 3269 949 2870 19792;19793;19794;19795;19796;19797 12969 12969 331;1727;1728 537 1 GNIGRPTQK Unmodified 969.53558 0.53557744 1201 Karp_00820 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 14.206 14.47 2 0.01795 2096 20181213_JW_Orientia_Karp_2_3 145.16 67.436 15177000 6162800 0 4907800 1746200 0 1328300 1032100 0 3270 1201 2871 19798;19799;19800;19801;19802 12970;12971;12972;12973 12972 4 GNIYLATITK Unmodified 1092.6179 0.61791009 1362 Karp_01816 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.398 49.699 2 0.00019732 17306 20181213_JW_Orientia_Karp_2_2 153.97 75.821 202040000 35346000 56563000 41318000 28343000 16146000 20101000 0 4224700 3271 1362 2872 19803;19804;19805;19806;19807;19808;19809 12974;12975;12976;12977;12978;12979;12980 12978 7 GNLGAGNGNLQGPR Deamidation (NQ) 1324.6484 0.64837537 418 D6REM6;A8MXP9;P43243;D6R991;Q5CZA7;B4DF66;B3KM87;B4DRS1;P43243-2;D6RAM9;D6RAY2;D6RBI2;D6RE02;D6RIA2;H0Y8T4 MATR3;DKFZp686K0542 Matrin-3 yes no 0 1 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 35.191 35.473 2 0.027661 10620 20181213_JW_Orientia_Karp_1_2 90.108 52.764 9889900 3686300 3112300 2115900 0 756510 0 0 218930 3272 418 2873 19810;19811;19812;19813;19814 12981 12981 162 1 GNLLQCICTGNGR Deamidation (NQ) 1462.6657 0.66568169 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 52.766 53.126 2 0.0019529 19981 20181213_JW_Orientia_Karp_1_2 139.31 77.14 111470000 30011000 25524000 37347000 4186100 3794200 4943400 3589400 2077200 3273 85 2874 19815;19816;19817;19818;19819;19820;19821;19822;19823;19824;19825;19826;19827 12982;12983 12982 42 2 GNLSFDINK Unmodified 1006.5084 0.50835964 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 46.169 46.359 2 0.00082427 16815 20181213_JW_Orientia_Karp_1_1 134.26 46.563 52276000 19885000 12841000 13108000 0 2773200 3667900 0 0 3274 1188 2875 19828;19829;19830;19831;19832 12984;12985;12986;12987;12988 12984 5 GNNNFVSGVPESLNVMIK Oxidation (M) 1933.9568 0.95676156 1170 Karp_00624 yes yes 0 0 1 0 By MS/MS By matching 1 1 60.453 60.853 2 0.035121 25871 20181213_JW_Orientia_Karp_1_2 66.674 23.172 4203900 0 3053600 0 1150300 0 0 0 0 3275 1170 2876 19833;19834 12989 12989 1 GNPLDNHPSWK Unmodified 1263.5996 0.59963426 1423 Karp_02309 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 36.513 36.834 3 0.019329 11778 20181213_JW_Orientia_Karp_1_1 68.786 42.074 132340000 84352000 22662000 8756500 5284000 4252700 1881500 5149200 0 3276 1423 2877 19835;19836;19837;19838;19839;19840;19841 12990;12991;12992 12990 3 GNPTVEVDLFTSK Unmodified 1405.7089 0.70890994 93 A0A024R4F1;P06733;K7EM90 ENO1 Alpha-enolase;Enolase yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.668 57.97 2 0.0011133 21832 20181213_JW_Orientia_Karp_2_2 138.2 38.168 118370000 21280000 25939000 15232000 15472000 20135000 15751000 0 4561200 3277 93 2878 19842;19843;19844;19845;19846;19847;19848 12993;12994;12995;12996;12997;12998 12996 6 GNSIIMLEALER Unmodified 1344.7071 0.7071358 414 Q49AN9;F5H013;P62308;A8MWD9 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 0 0 0 0 By MS/MS 1 64.373 64.524 2 0.021891 25378 20181213_JW_Orientia_Karp_2_3 96.745 34.578 0 0 0 0 0 0 0 0 0 3278 414 2879 19849 12999 12999 1 GNSLQEILER Unmodified 1157.6041 0.60405094 92 B2R5V9;A0A024R4E5;Q00341;B4DKR8;Q5HYC5;H7C0A4 HDLBP;DKFZp686L08115 Vigilin yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.953 52.213 2 0.011746 20441 20181213_JW_Orientia_Karp_1_2 90.149 22.655 23300000 6137800 7248300 0 4155000 2244900 3514300 0 0 3279 92 2880 19850;19851;19852;19853;19854;19855 13000;13001 13000 2 GNTHTEILK Unmodified 1011.5349 0.53490874 803 CON__P34955 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 2 21.143 21.571 2 0.0020406 3098 20181213_JW_Orientia_Karp_3_2 118.33 42.3 22706000 2474300 6386400 2905600 3313700 1858700 0 3341300 2426200 + 3280 803 2881 19856;19857;19858;19859;19860;19861;19862;19863 13002;13003 13003 2 GNTQIINAYVPLGQMFGYVSTLR Unmodified 2541.305 0.30497915 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 75.518 75.518 3 9.6273E-06 34976 20181213_JW_Orientia_Karp_1_3 122.18 92.867 62009000 24065000 0 16500000 2020000 11757000 3073400 4594200 0 3281 1094 2882 19864;19865;19866;19867;19868;19869 13004;13005;13006 13005 3 GNTQIINAYVPLGQMFGYVSTLR Oxidation (M) 2557.2999 0.29989378 1094 Karp_00243 yes yes 0 0 1 0 By matching By matching By MS/MS 1 1 1 72.607 72.656 2 0.0039214 26773 20181213_JW_Orientia_Karp_3_1 88.385 58.652 37800000 13050000 0 8376400 0 0 0 16373000 0 3282 1094 2882 19870;19871;19872 13007 13007 606 1 GNTVAVISNGTAVLGLGNLGAAAAKPVMEGK Oxidation (M);Deamidation (NQ) 2896.5328 0.53280684 1336 Karp_01409 yes yes 0 1 1 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 67.039 67.229 3 0.017537 30058 20181213_JW_Orientia_Karp_1_1 59.661 33.531 20058000 8521700 0 4946300 0 4211400 0 0 2378200 3283 1336 2883 19873;19874;19875;19876;19877 13008;13009 13008 774 896 2 GNVFSSPTAAGTPNK Unmodified 1446.7103 0.71030693 622 B4DPW5;B7Z6G4;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682;E9PGZ1;Q9NYG1;B4E3I0;Q7Z2Y9;Q5HY93 CALD1;DKFZp686P03208;DKFZp779D0769 Caldesmon yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.173 39.506 2 1.2241E-07 12195 20181213_JW_Orientia_Karp_3_1 179.83 124.77 189210000 38220000 29954000 31830000 34293000 0 32664000 22245000 0 3284 622 2884 19878;19879;19880;19881;19882;19883 13010;13011;13012;13013;13014;13015 13015 6 GNVGFVFTK Unmodified 967.51272 0.51271674 229 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;P05388-2;F8VPE8;G3V210;F8VW21;F8VQY6;F8VRK7;F8VS58;F8VZS0;F8VWV4 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 49.266 49.588 2 0.00078145 18287 20181213_JW_Orientia_Karp_1_3 146.23 77.445 50997000 27439000 0 13043000 5791200 0 3305300 0 1418600 3285 229 2885 19884;19885;19886;19887;19888 13016 13016 1 GNVQVVIPFLTESYSSSQDPPEK Unmodified 2520.2384 0.23839896 42 A0A024R1A3;P22314-2;P22314;B4DDE4;B4DL67 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By matching By MS/MS 1 1 72.538 72.587 3 0.020026 33047 20181213_JW_Orientia_Karp_1_3 50.873 22.671 32794000 17338000 0 15456000 0 0 0 0 0 3286 42 2886 19889;19890 13017 13017 1 GPAAAQGSAAAPAEPK Unmodified 1392.6997 0.69974224 598 B4DM19;B4DZF1;Q9UHD9 UBQLN2 Ubiquilin-2 yes no 0 0 0 0 By matching By MS/MS 1 1 28.524 28.699 2 0.0043417 7364 20181213_JW_Orientia_Karp_1_2 135.02 106.44 917840 630330 287520 0 0 0 0 0 0 3287 598 2887 19891;19892 13018 13018 1 GPAFNMASPESDFGINLK Oxidation (M) 1909.888 0.88801329 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 60.674 60.975 2 6.4816E-42 25945 20181213_JW_Orientia_Karp_1_2 241.76 167.88 96555000 33521000 17721000 31829000 5754000 0 0 0 7729700 3288 1782 2888 19893;19894;19895;19896;19897;19898;19899 13019;13020;13021;13022;13023;13024;13025;13026 13020 1398 8 GPAFNMASPESDFGINLK Unmodified 1893.8931 0.89309867 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 67.04 67.254 2 0.0014021 29684 20181213_JW_Orientia_Karp_1_2 132.06 80.7 60198000 20855000 20097000 16731000 0 0 0 0 2515100 3289 1782 2888 19900;19901;19902;19903 13027 13027 1 GPAGNWGPPGDYPDR Unmodified 1554.6852 0.68515481 1681 P48634-4;P48634-3;P48634 PRRC2A Protein PRRC2A yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 47.664 47.914 2 0.0057932 17681 20181213_JW_Orientia_Karp_1_1 103.75 67.792 8502000 3646200 0 3448200 0 1308000 0 99623 0 3290 1681 2889 19904;19905;19906;19907 13028 13028 1 GPAGPQGPR Unmodified 835.43005 0.43004974 1542 P02452;D3DTX7;B7Z4S2 COL1A1 Collagen alpha-1(I) chain yes no 0 0 0 0 By MS/MS 1 20.031 20.031 2 0.010821 4039 20181213_JW_Orientia_Karp_1_1 92.467 31.668 5620700 5620700 0 0 0 0 0 0 0 3291 1542 2890 19908 13029 13029 1 GPAYCGQTVTISYR Unmodified 1571.7402 0.74022685 1438 Karp_02403 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.061 46.334 2 2.2652E-05 16771 20181213_JW_Orientia_Karp_1_1 171.49 118.4 63266000 17953000 13677000 14687000 2467100 6367000 4230700 0 3884700 3292 1438 2891 19909;19910;19911;19912;19913;19914;19915;19916 13030;13031;13032;13033;13034;13035;13036 13030 7 GPAYGLSR Unmodified 819.4239 0.42390173 1662 P37802;P37802-2;X6RJP6;B7Z5A2 TAGLN2 Transgelin-2 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 31.268 31.686 2 0.012753 8730 20181213_JW_Orientia_Karp_1_2 99.375 33.572 684390000 1392400 298420000 0 50451000 81046000 0 152030000 101050000 3293 1662 2892 19917;19918;19919;19920;19921;19922 13037;13038;13039 13037 3 GPDGLTAFEATDNQAIK Unmodified 1746.8424 0.84244331 773 C9JL85;Q69YG1;P58546 MTPN;DKFZp761E1322 Myotrophin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.725 55.082 2 1.9413E-31 20463 20181213_JW_Orientia_Karp_2_3 257.2 174.7 212640000 38339000 40627000 42268000 25779000 29717000 32284000 1823200 1799600 3294 773 2893 19923;19924;19925;19926;19927;19928;19929;19930 13040;13041;13042;13043;13044;13045;13046 13045 7 GPDGLTAFEATDNQAIK Deamidation (NQ) 1747.8265 0.8264589 773 C9JL85;Q69YG1;P58546 MTPN;DKFZp761E1322 Myotrophin yes no 0 1 0 0 By matching By matching By matching By MS/MS 1 1 1 1 56.68 56.942 2 0.014637 21659 20181213_JW_Orientia_Karp_2_3 96.866 62.365 59663000 0 13008000 22604000 0 13725000 10326000 0 0 3295 773 2893 19931;19932;19933;19934 13047 13047 256 1 GPDPSSPAFR Unmodified 1029.488 0.48795855 186 A0A024R9Q1;P07996;A0PJG0;CON__Q28194;A8MZG1 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 35.537 35.881 2 0.0003345 10764 20181213_JW_Orientia_Karp_1_2 140.35 113.91 407040000 135070000 143000000 84194000 0 16903000 0 24560000 3308200 + 3296 186 2894 19935;19936;19937;19938;19939;19940;19941 13048;13049;13050;13051;13052;13053 13049 6 GPEVDLK Unmodified 756.40177 0.4017693 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 31.71 32.036 2 0.011787 7731 20181213_JW_Orientia_Karp_2_2 122.15 0 44157000 10451000 20444000 8785800 2019300 2062000 0 0 394360 3297 1782 2895 19942;19943;19944;19945;19946;19947;19948 13054;13055;13056;13057 13056 4 GPFLVALGK Unmodified 900.54329 0.54328858 257;732 A0A024RDE8;Q96HC4;F5H7Y0;Q96HC4-7;Q96HC4-4;Q96HC4-6;H0Y8Y3;B7Z8X5;Q59FC9 PDLIM5 PDZ and LIM domain protein 5 no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 56.857 57.067 2 0.0017333 21535 20181213_JW_Orientia_Karp_2_3 121.29 82.486 80043000 11804000 7986300 45429000 0 3969800 10854000 0 0 3298 257;732 2896 19949;19950;19951;19952;19953;19954 13058;13059;13060;13061;13062 13062 5 GPFTDVVTTNLK Unmodified 1290.682 0.68196691 870 E5RK64;Q53XM7;O95292-2;O95292;Q59EZ6;A8KA83;Q9P0L0;Q9P0L0-2 VAPB;VAPA Vesicle-associated membrane protein-associated protein B/C;Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.896 55.217 2 2.8955E-05 22211 20181213_JW_Orientia_Karp_1_2 172.56 111 164620000 48038000 40858000 53987000 4607200 8963800 7333800 830210 0 3299 870 2897 19955;19956;19957;19958;19959;19960;19961;19962 13063;13064;13065;13066;13067;13068 13064 5 GPFVEAEVPDVDLECPDAK Unmodified 2085.9565 0.95648679 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching 1 1 64.889 65.239 2 0.00030779 28526 20181213_JW_Orientia_Karp_1_2 146.96 104.75 13566000 0 6550100 0 0 0 0 7015900 0 3300 1782 2898 19963;19964 13069 13069 1 GPGVDLPSVNLSMPK Oxidation (M) 1525.781 0.78102903 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 56.735 57.121 2 0.0097216 23162 20181213_JW_Orientia_Karp_1_3 94.547 50.122 51949000 0 14069000 31864000 0 0 0 0 6015600 3301 1782 2899 19965;19966;19967 13070 13070 1399 1 GPHVDVSGPDIDIEGPEGK Unmodified 1916.9116 0.91158551 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 2 49.763 50.143 2;3 2.5323E-05 18796 20181213_JW_Orientia_Karp_1_2 145.61 99.262 333700000 165700000 14380000 0 68051000 25784000 47283000 2136300 10363000 3302 1782 2900 19968;19969;19970;19971;19972;19973;19974;19975;19976 13071;13072;13073;13074;13075 13072 5 GPITSAAELNDPQSILLR Unmodified 1894.016 0.015991 159 Q5T9B9;Q96CG0;A8K2X4;A0A024R878;P17813-2;P17813 ENG Endoglin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 65.169 65.379 2 0.00086615 29005 20181213_JW_Orientia_Karp_1_1 117.2 75.52 28549000 12499000 0 10232000 241820 0 1398400 4177200 0 3303 159 2901 19977;19978;19979;19980;19981 13076 13076 1 GPLASQISGLYLPYK Unmodified 1605.8766 0.87664397 487 Q6NZX3;Q53Z63;B2RBH2;P21589-2;P21589;Q96B60 NT5E 5'-nucleotidase yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 2 2 64.843 65.096 2 2.285E-13 28903 20181213_JW_Orientia_Karp_1_1 205.12 150.04 114440000 34760000 31683000 32223000 0 0 6267900 3205200 6299700 3304 487 2902 19982;19983;19984;19985;19986;19987;19988;19989 13077;13078;13079 13077 3 GPLDLALVAQDATGK Unmodified 1467.7933 0.79330827 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 66.276 66.477 2 8.1009E-38 25684 20181213_JW_Orientia_Karp_3_2 253.42 213.63 460120000 73722000 119130000 100730000 0 59493000 41327000 22257000 43469000 3305 1266 2903 19990;19991;19992;19993;19994;19995;19996;19997 13080;13081;13082;13083;13084;13085;13086;13087;13088 13087 9 GPLEYVPSAK Unmodified 1059.5601 0.56006086 1800 X5D7K9;X5DNU0;X5D2M8;Q14764;B4DP93;B4DXN0;B4DDR2;X5D7S8 MVP Major vault protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.63 45.805 2 0.0037501 16067 20181213_JW_Orientia_Karp_1_2 106.6 69.839 52423000 15001000 16211000 19254000 0 1957100 0 0 0 3306 1800 2904 19998;19999;20000;20001 13089;13090;13091 13090 3 GPLMFLSR Oxidation (M) 935.48987 0.48987281 1365 Karp_01875 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 53.121 53.37 2 0.0082239 21509 20181213_JW_Orientia_Karp_1_1 104.21 55.112 86605000 19007000 8868400 22679000 12879000 6304200 16867000 0 0 3307 1365 2905 20002;20003;20004;20005;20006;20007 13092;13093;13094;13095 13092 944 4 GPLMFLSR Unmodified 919.49496 0.49495818 1365 Karp_01875 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.725 58.001 2 0.011348 22089 20181213_JW_Orientia_Karp_2_3 101.64 56.951 86157000 38311000 22094000 16263000 0 2232900 5535300 0 1720100 3308 1365 2905 20008;20009;20010;20011;20012;20013 13096;13097;13098;13099;13100;13101;13102 13101 7 GPLMMYISK Oxidation (M) 1054.5191 0.51912402 1593 P13639;Q8TA90;Q6PK56;B4DRE8 EEF2 Elongation factor 2 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 47.314 47.651 2 0.027038 16970 20181213_JW_Orientia_Karp_1_3 76.478 41.122 20912000 0 9695500 5267900 2543400 0 3404700 0 0 3309 1593 2906 20014;20015;20016;20017 13103;13104 13104 1213 2 GPLPAAPPVAPER Unmodified 1270.7034 0.70337105 946 Q53R94;Q6IPN0;F8W914;Q9NQC3-2;Q9NQC3-5;Q9NQC3 RTN4 Reticulon;Reticulon-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 48.998 49.314 2 0.0049514 16209 20181213_JW_Orientia_Karp_3_2 111.06 72.971 699040000 205770000 229890000 149280000 0 18721000 37880000 243270 57254000 3310 946 2907 20018;20019;20020;20021;20022;20023;20024 13105;13106;13107;13108;13109;13110;13111;13112 13112 8 GPLPLSSQHR Unmodified 1090.5883 0.5883413 418 D6REM6;A8MXP9;P43243;D6R991;Q68D11;D6R8Z5 MATR3;DKFZp686K23100 Matrin-3 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 29.442 29.708 3 0.034117 7703 20181213_JW_Orientia_Karp_1_2 53.124 5.9259 4521100 0 4197100 146600 0 0 177460 0 0 3311 418 2908 20025;20026;20027 13113 13113 1 GPLQSVQVFGR Unmodified 1186.6459 0.64585618 1727 P62249;M0R3H0;M0R210;Q6IPX4 RPS16 40S ribosomal protein S16 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.829 53.175 2 5.1568E-13 21325 20181213_JW_Orientia_Karp_1_1 218.94 179.69 174670000 55607000 39669000 40282000 15790000 7650500 11139000 3897000 631120 3312 1727 2909 20028;20029;20030;20031;20032;20033;20034;20035 13114;13115;13116;13117;13118;13119;13120 13114 7 GPMLAHK Unmodified 752.40033 0.40032952 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 16.769 16.999 2 0.022267 3129 20181213_JW_Orientia_Karp_1_1 99.511 74.428 6666400 2930700 1669900 1587900 339740 0 0 138240 0 3313 1066 2910 20036;20037;20038;20039;20040 13121;13122;13123 13121 3 GPMLAHK Oxidation (M) 768.39524 0.39524414 1066 Karp_00014 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 12.909 13.241 2 0.030181 2172 20181213_JW_Orientia_Karp_1_1 105.42 23.702 613960 0 0 159750 161490 0 0 292720 0 3314 1066 2910 20041;20042;20043;20044 13124;13125 13124 2 GPPAPAPEVEELAR Unmodified 1431.7358 0.73579339 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 50.144 50.344 2 0.014363 18982 20181213_JW_Orientia_Karp_1_2 91.313 52.134 109300000 46126000 29209000 24926000 0 0 9036000 0 0 3315 839 2911 20045;20046;20047;20048 13126;13127;13128 13127 3 GPPDFSSDEER Unmodified 1234.5102 0.51021013 222 A0A024RBE7;P42167;G5E972;A0A024RBH7;P42167-2;Q59G12;P42167-3;P42166 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 36.113 36.446 2 0.0033297 10930 20181213_JW_Orientia_Karp_1_3 112.3 67.273 43599000 13020000 14233000 8544900 2263400 1955700 0 3582000 0 3316 222 2912 20049;20050;20051;20052;20053;20054;20055 13129;13130;13131;13132 13131 4 GPQITGPSLEGDLGLK Unmodified 1580.841 0.84098675 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.336 59.629 2 2.7809E-20 25498 20181213_JW_Orientia_Karp_1_1 223.36 168.27 204940000 37539000 42612000 49349000 17033000 30544000 27285000 581410 0 3317 1782 2913 20056;20057;20058;20059;20060;20061;20062 13133;13134;13135;13136;13137;13138;13139 13133 7 GPQNATDSYVHK Unmodified 1315.6157 0.61567826 734 B7Z982;O43660-2;O43660;D6RA26 PLRG1 Pleiotropic regulator 1 yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 24.005 24.35 3 0.027278 5308 20181213_JW_Orientia_Karp_3_1 58.781 33.928 4110300 416310 0 575090 533080 502110 287900 1274800 520990 3318 734 2914 20063;20064;20065;20066;20067;20068;20069 13140 13140 1 GPQVQQPPPSNR Unmodified 1303.6633 0.66329715 563 B4DF60;F5H365;B4DSQ5;Q15436-2;Q15436;B4E0Q9 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 25.975 26.073 2 0.0018063 6192 20181213_JW_Orientia_Karp_1_3 124.1 88.835 2277700 0 0 2277700 0 0 0 0 0 3319 563 2915 20070;20071;20072 13141;13142;13143 13143 3 GPQVSGELK Unmodified 913.4869 0.48689592 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 28.41 28.71 2 0.0092848 7395 20181213_JW_Orientia_Karp_1_2 95.502 18.444 21370000 10337000 4588100 4791600 0 0 0 1653300 0 3320 1782 2916 20073;20074;20075;20076 13144;13145;13146;13147 13145 4 GPQVSSALNLDTSK Unmodified 1415.7256 0.72562264 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.645 45.966 2 3.219E-26 15330 20181213_JW_Orientia_Karp_2_1 240.18 182.83 279090000 56939000 79974000 62591000 9418200 25504000 11574000 5579400 27508000 3321 1782 2917 20077;20078;20079;20080;20081;20082;20083;20084 13148;13149;13150;13151;13152;13153;13154;13155 13151 8 GPSCQDCDTGYTR Unmodified 1515.5718 0.57184089 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 25.645 25.915 2 2.1312E-17 6520 20181213_JW_Orientia_Karp_1_1 220.29 191.6 6008800 1010300 1724400 1171300 716970 0 0 1385800 0 3322 195 2918 20085;20086;20087;20088;20089 13156;13157;13158 13156 3 GPSGLLVYQGK Unmodified 1117.6132 0.61315906 102 A0A024R4X0;P00387-2;P00387;P00387-3;Q6ZVI6;B1AHF3 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 46.095 46.295 2 0.026543 16196 20181213_JW_Orientia_Karp_1_3 81.525 27.75 34170000 10763000 12780000 9134300 0 0 1492200 0 0 3323 102 2919 20090;20091;20092;20093 13159;13160 13160 1 GPSGPQGIR Unmodified 867.45626 0.45626449 1569 P08123 COL1A2 Collagen alpha-2(I) chain yes yes 0 0 0 0 By MS/MS 1 24.889 24.889 2 0.019012 6067 20181213_JW_Orientia_Karp_1_1 84.743 43.314 1245900 1245900 0 0 0 0 0 0 0 3324 1569 2920 20094 13161 13161 1 GPSLDIDTPDVNIEGPEGK Unmodified 1951.9375 0.93746591 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 61.011 61.221 2 1.3974E-41 21304 20181213_JW_Orientia_Karp_3_1 255.72 190.47 186890000 70507000 38726000 41455000 0 22868000 13332000 0 0 3325 1782 2921 20095;20096;20097;20098;20099;20100 13162;13163 13163 2 GPSLNPVLDYDHGSR Unmodified 1625.7798 0.77978347 418 D6REM6;A8MXP9;P43243;D6R991 MATR3 Matrin-3 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 46.305 46.521 3 0.038707 16305 20181213_JW_Orientia_Karp_1_3 71.513 52.607 98150000 30172000 0 61460000 6518500 0 0 0 0 3326 418 2922 20101;20102;20103 13164 13164 1 GPSLQGDLAVSGDIK Unmodified 1455.7569 0.75692277 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 51.012 51.319 2 5.4459E-05 18410 20181213_JW_Orientia_Karp_2_3 166.62 101.47 41405000 4602000 14949000 8758500 3554700 4959400 2943100 1637900 0 3327 1782 2923 20104;20105;20106;20107;20108;20109;20110;20111 13165;13166;13167;13168;13169 13168 5 GPSSVEDIK Unmodified 930.46583 0.46582612 1562 P06748-2;P06748;A4ZU86;P06748-3;Q9BTI9;Q9NX34;A0A024R3V9 NPM1;hCG_37498 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 29.441 29.824 2 0.00024623 7375 20181213_JW_Orientia_Karp_2_3 170.3 96.042 120670000 41831000 19264000 28661000 9014300 3621200 5016700 9005600 4255100 3328 1562 2924 20112;20113;20114;20115;20116;20117;20118;20119 13170;13171;13172;13173;13174;13175;13176;13177 13175 8 GPSWDPFR Unmodified 960.44537 0.44536545 1553 V9HW43;P04792;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.877 55.235 2 0.0086706 20265 20181213_JW_Orientia_Karp_2_2 108.09 73.195 4464900000 1175700000 735990000 718590000 216000000 537120000 1077600000 1489900 2427500 3329 1553 2925 20120;20121;20122;20123;20124;20125;20126;20127 13178;13179;13180;13181;13182;13183;13184;13185;13186 13184 9 GPSYGEDVSNTTTAQK Unmodified 1653.7482 0.74820857 1640 P29590-4;P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;Q9BZY1;H3BVD2;Q9UE85;B4DTK9 PML Protein PML yes no 0 0 0 0 By MS/MS 1 32.661 32.859 2 0.006674 9217 20181213_JW_Orientia_Karp_1_3 144.51 93.716 0 0 0 0 0 0 0 0 0 3330 1640 2926 20128 13187 13187 1 GPTVGGGLPGIGVQGLEGNLQMPGIK Oxidation (M) 2461.2999 0.29989378 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 67.4 67.601 3 9.3411E-11 23748 20181213_JW_Orientia_Karp_3_1 144.95 115.81 122770000 30647000 21342000 27538000 0 15680000 4660500 14682000 8224300 3331 1782 2927 20129;20130;20131;20132;20133;20134;20135;20136 13188;13189;13190;13191;13192;13193;13194;13195;13196 13195 1400 9 GPTVGGGLPGIGVQGLEGNLQMPGIK Unmodified 2445.305 0.30497915 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 72.408 72.491 3 0.00035533 33372 20181213_JW_Orientia_Karp_1_2 100.14 69.553 200410000 62116000 54274000 45949000 4562000 7170700 0 26337000 0 3332 1782 2927 20137;20138;20139;20140;20141;20142 13197;13198 13197 2 GPVGTVSEAQLAR Unmodified 1283.6834 0.68336389 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;Q9NZM1-5;Q9NZM1-7;Q9NZM1-8 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 40.595 40.896 2 0.00011976 13380 20181213_JW_Orientia_Karp_1_2 163.84 95.468 107920000 48594000 20495000 22237000 0 1617700 2434700 9914800 2631800 3333 1991 2928 20143;20144;20145;20146;20147;20148;20149 13199;13200;13201;13202;13203 13200 5 GPVKPTGGPGGGGTQTQQQMNQLK Oxidation (M) 2381.1758 0.17575589 470 Q8IV96;B2R858;P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes no 0 0 1 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 26.877 27.259 3 0.0085488 7092 20181213_JW_Orientia_Karp_1_1 83.064 43.82 23013000 2601200 5376700 6775100 0 0 0 6441800 1817600 3334 470 2929 20150;20151;20152;20153;20154 13204;13205 13204 308 2 GPVLQLHDLK Unmodified 1118.6448 0.64479354 79 B2R642;A0A024R3I5;P43121;A8K6A6;B3KXZ9;P43121-2 MCAM Cell surface glycoprotein MUC18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 41.481 41.748 2;3 0.00025032 13833 20181213_JW_Orientia_Karp_1_2 143.37 79.166 248570000 84867000 67048000 67775000 6654400 3542900 6650000 12035000 0 3335 79 2930 20155;20156;20157;20158;20159;20160;20161;20162;20163;20164 13206;13207;13208;13209;13210;13211;13212 13207 7 GPVSGTEPEPVYSMEAADYR Oxidation (M) 2169.9525 0.95246405 117 A0A024R5M3;Q53HG7;Q14247-3;Q14247;Q14247-2;H0YEV2;H0YCD9;B4E358 CTTN Src substrate cortactin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.661 48.006 2 1.8247E-60 17173 20181213_JW_Orientia_Karp_1_3 258.42 210.3 53706000 6999900 7689000 7501300 11498000 4282800 6637400 185360 8912100 3336 117 2931 20165;20166;20167;20168;20169;20170;20171;20172 13213;13214;13215;13216;13217;13218;13219 13215 107 7 GPVSGTEPEPVYSMEAADYR Unmodified 2153.9575 0.95754942 117 A0A024R5M3;Q53HG7;Q14247-3;Q14247;Q14247-2;H0YEV2;H0YCD9;B4E358 CTTN Src substrate cortactin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 54.486 54.736 2 1.6154E-21 21632 20181213_JW_Orientia_Karp_1_3 196.18 151.62 32669000 8617300 0 13340000 6098300 4613500 0 0 0 3337 117 2931 20173;20174;20175;20176;20177 13220;13221;13222;13223 13222 4 GPYESGSGHSSGLGHQESR Unmodified 1927.8409 0.84088018 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By MS/MS 1 11.759 12.769 3 0.02881 2109 20181213_JW_Orientia_Karp_3_2 72.433 41.694 1706800 0 0 0 0 0 0 0 1706800 + 3338 820 2932 20178 13224 13224 1 GPYESGSGHSSGLGHR Unmodified 1583.7077 0.70768116 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 17.259 17.63 3 0.003943 3513 20181213_JW_Orientia_Karp_3_1 94.45 60.272 165340000 30431000 26244000 17497000 19642000 6158800 17641000 20379000 27349000 + 3339 820 2933 20179;20180;20181;20182;20183;20184;20185;20186 13225;13226;13227;13228;13229;13230;13231 13230 7 GPYNDAFR Unmodified 938.42463 0.42463001 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.537 35.858 2 0.0070523 10378 20181213_JW_Orientia_Karp_3_1 113.26 38.841 260100000 112310000 51095000 54359000 5717000 17865000 4740700 14016000 0 3340 1266 2934 20187;20188;20189;20190;20191;20192;20193;20194 13232;13233;13234;13235;13236;13237;13238 13237 7 GQAAVQQLQAEGLSPR Unmodified 1651.8642 0.86418181 1603 P16152;E9PQ63;A8MTM1;V9HW40;Q53F60;P16152-2;O75828 CBR1;HEL-S-25;CBR3 Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 46.533 46.843 2 1.2662E-19 16423 20181213_JW_Orientia_Karp_1_3 214.61 176.91 56356000 10456000 11718000 28982000 0 1206400 0 1357200 2636300 3341 1603 2935 20195;20196;20197;20198;20199;20200 13239;13240;13241;13242;13243 13241 5 GQATDIQIHAQEILK Unmodified 1663.8893 0.88933392 1352 Karp_01574 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 47.604 47.92 3 0.0013532 16220 20181213_JW_Orientia_Karp_2_2 113.76 86.986 654880000 131720000 136320000 118770000 0 111040000 69103000 164480 87766000 3342 1352 2936 20201;20202;20203;20204;20205;20206;20207 13244;13245;13246;13247;13248;13249 13247 6 GQCDLELINVCNENSLFK Unmodified 2151.9929 0.99288907 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS 1 68.134 68.333 2 0.00093562 30188 20181213_JW_Orientia_Karp_1_3 116.63 74.604 6230800 0 0 6230800 0 0 0 0 0 3343 1757 2937 20208 13250 13250 1 GQEDSLASAVDAATEQK Unmodified 1718.7959 0.79588705 1034 J3KR35;Q8WUD4 CCDC12 Coiled-coil domain-containing protein 12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.441 51.843 2 2.5099E-24 19944 20181213_JW_Orientia_Karp_1_2 225.21 170.43 17923000 0 8168400 0 0 3787500 2837600 2584600 545090 3344 1034 2938 20209;20210;20211;20212;20213;20214;20215 13251;13252;13253;13254;13255;13256;13257 13251 7 GQEVETSVTYYR Unmodified 1430.6678 0.66777341 851 Q5HYD9;D6RFH4;H3BUX2;J3KNF8;O43169 DKFZp686M0619;CYB5B Cytochrome b5 type B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 40.656 40.958 2 1.3974E-16 13373 20181213_JW_Orientia_Karp_1_2 217.14 174.42 101720000 29780000 26214000 28648000 0 1713100 1852000 11219000 2292700 3345 851 2939 20216;20217;20218;20219;20220;20221;20222 13258;13259;13260;13261 13259 4 GQFSQQENK Unmodified 1064.4887 0.48868683 1091 Karp_00232 yes yes 0 0 0 0 By MS/MS By matching 1 1 18.13 18.354 2 0.0011635 3292 20181213_JW_Orientia_Karp_1_2 129.42 91.261 3904500 0 1617300 2287100 0 0 0 0 0 3346 1091 2940 20223;20224 13262 13262 1 GQGATAAQQGGYEIPAR Unmodified 1673.8121 0.81214624 249 C9JZE5;C9J8T5;A0A024RCZ8;Q9NSK0-4;B4DME9;Q9NSK0;Q9NSK0-3 KLC4 Kinesin light chain 4 yes no 0 0 0 0 By matching By MS/MS 1 1 38.719 38.818 2 0.00061105 12209 20181213_JW_Orientia_Karp_1_3 125.73 65.625 5455800 2419500 0 3036300 0 0 0 0 0 3347 249 2941 20225;20226 13263 13263 1 GQGNKVQNGSVHQK 3 Deamidation (NQ) 1482.7063 0.70628418 698 S4R3J8;S4R3V3;B5BU99;Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 yes no 0 3 0 1 By matching By MS/MS 1 1 55.856 56.031 2 0.012199 22681 20181213_JW_Orientia_Karp_1_2 70.412 23.955 43704000 25093000 18611000 0 0 0 0 0 0 3348 698 2942 20227;20228 13264 13264 235;1590;1591 0 GQGSSPVAMQK Oxidation (M) 1104.5234 0.52335778 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 18.96 19.193 2 6.9334E-13 3386 20181213_JW_Orientia_Karp_2_1 214.71 154.02 9104000 3113400 2048000 2198400 750110 0 288080 706050 0 3349 19 2943 20229;20230;20231;20232;20233;20234 13265;13266;13267;13268;13269;13270 13268 7 6 GQGVSSNMREISKEGNR Oxidation (M);2 Deamidation (NQ) 1865.8538 0.85375305 757 H7BZ95;C9IYI1;Q6E0U4-6;Q6E0U4-16 DMKN yes no 0 2 1 2 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 41.607 41.973 2 0.028123 14125 20181213_JW_Orientia_Karp_1_3 58.04 24.952 683680000 0 14269000 202590000 65839000 32790000 143140000 165650000 59402000 3350 757 2944 20235;20236;20237;20238;20239;20240;20241;20242 13271;13272 13271 248;249;1630 444 1 GQGVSSNMREISKEGNR Oxidation (M);3 Deamidation (NQ) 1866.8378 0.83776864 757 H7BZ95;C9IYI1;Q6E0U4-6;Q6E0U4-16 DMKN yes no 0 3 1 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 42.841 43.143 2 0.021036 13511 20181213_JW_Orientia_Karp_2_1 64.121 18.242 194310000 56109000 64568000 57628000 13021000 0 0 0 2985200 3351 757 2944 20243;20244;20245;20246;20247 13273 13273 248;249;1630 444 0 GQHGNSVLHCAAQGR Unmodified 1590.7434 0.74335516 1185 Karp_00684 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 19.196 19.496 3 0.035345 3569 20181213_JW_Orientia_Karp_3_1 56.286 25.848 1612900 0 0 988650 0 0 330440 293840 0 3352 1185 2945 20248;20249;20250 13274 13274 1 GQHVPGSPFQFTVGPLGEGGAHK Unmodified 2303.1447 0.14471376 1615;1797 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91;H0Y5C6;Q14315-2;Q14315;Q59H94 FLNA;FLJ00119;FLNC Filamin-A;Filamin-C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 1 1 1 1 52.092 52.425 3;4 0.00094693 20260 20181213_JW_Orientia_Karp_1_3 98.76 65.677 736210000 400170000 107250000 50212000 34316000 12338000 35311000 93477000 3137800 3353 1615;1797 2946 20251;20252;20253;20254;20255;20256;20257;20258;20259;20260;20261 13275;13276;13277;13278;13279;13280;13281;13282 13279 8 GQHVTGSPFQFTVGPLGEGGAHK Unmodified 2307.1396 0.13962838 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;H7C5L4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.505 50.755 4 0.025185 19309 20181213_JW_Orientia_Karp_1_2 50.232 20.093 196870000 38867000 85671000 46964000 17319000 8049600 0 0 0 3354 1520 2947 20262;20263;20264;20265;20266 13283;13284 13283 1 GQILMPNIGYGSNK Oxidation (M) 1506.7501 0.75006325 70 D3YTB1;A0A024R2G7;F8W727;P62910 RPL32 60S ribosomal protein L32 yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 48.1 48.283 2 0.027617 18040 20181213_JW_Orientia_Karp_1_1 75.819 20.252 22994000 5808900 11126000 6058400 0 0 0 0 0 3355 70 2948 20267;20268;20269 13285 13285 75 1 GQILMPNIGYGSNK Unmodified 1490.7551 0.75514863 70 D3YTB1;A0A024R2G7;F8W727;P62910 RPL32 60S ribosomal protein L32 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 55.251 55.541 2 0.016819 22429 20181213_JW_Orientia_Karp_1_2 88.021 43.833 46294000 17084000 15406000 13223000 0 0 0 0 581240 3356 70 2948 20270;20271;20272;20273 13286 13286 1 GQKIAQK 2 Deamidation (NQ) 773.42832 0.42831841 891 Q8N6H6;E9PDS3;Q13797 ITGA9 Integrin alpha-9 yes no 0 2 0 1 By matching By matching By MS/MS 1 1 1 29.214 29.567 1 0.030538 6556 20181213_JW_Orientia_Karp_3_2 71.949 7.3821 4198700 0 0 3617200 0 0 221300 0 360270 3357 891 2949 20274;20275;20276 13287 13287 1701;1702 0 GQLEALQVDGGR Unmodified 1241.6364 0.6364137 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.114 44.425 2 4.1876E-05 15347 20181213_JW_Orientia_Karp_1_2 187.58 129.14 188040000 65285000 50348000 49698000 0 5395700 0 15408000 1899500 + 3358 811 2950 20277;20278;20279;20280;20281;20282 13288;13289;13290;13291;13292;13293 13289 6 GQLEQITGK Unmodified 972.52401 0.52400971 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;B0QZK4;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 34.142 34.484 2 0.029856 10027 20181213_JW_Orientia_Karp_1_3 78.098 29.537 57196000 22777000 2524900 27851000 1379900 0 0 0 2663600 3359 1846 2951 20283;20284;20285;20286;20287 13294 13294 1 GQLGNWMSPADFQR Oxidation (M) 1621.7307 0.73072479 1818 Q6IB91;Q16822;H0YM31;Q16822-2 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 53.233 53.533 2 0.0010188 20968 20181213_JW_Orientia_Karp_1_3 132.86 90.672 41512000 11216000 17495000 11834000 0 0 0 966830 0 3360 1818 2952 20288;20289;20290;20291 13295;13296;13297 13297 1453 3 GQPVLVGTVSIEK Unmodified 1325.7555 0.7554662 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 51.385 51.686 2 0.001133 19878 20181213_JW_Orientia_Karp_1_2 158.34 94.803 72360000 22063000 15320000 11294000 9436900 6784300 6144500 0 1317100 3361 1374 2953 20292;20293;20294;20295;20296;20297;20298 13298;13299 13299 2 GQQEIQDQLSLSEALQR Unmodified 1941.9756 0.97558275 1611 P20591;F8W8T1;Q8NAA8;P20591-2 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 2 57.808 58.1 2;3 1.0812E-67 24076 20181213_JW_Orientia_Karp_1_2 307.43 215.73 78192000 25936000 24695000 21689000 0 3174800 0 0 2696600 3362 1611 2954 20299;20300;20301;20302;20303;20304;20305;20306;20307;20308 13300;13301;13302;13303;13304;13305;13306;13307 13302 8 GQSEDPGSLLSLFR Unmodified 1504.7522 0.75217174 687 B4E2Z3;F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 72.582 72.656 2 0.002357 33107 20181213_JW_Orientia_Karp_1_3 122.46 57.729 23029000 0 0 17573000 0 0 0 5455700 0 3363 687 2955 20309;20310;20311 13308;13309;13310 13309 3 GQSINTSPSYSPDGSK Unmodified 1623.7376 0.73764389 1065 Karp_00013 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 2 1 1 35.049 35.407 2 1.2093E-62 10518 20181213_JW_Orientia_Karp_1_2 276.12 203.89 25276000 5531800 5545300 8031700 706540 2157400 0 2740100 563370 3364 1065 2956 20312;20313;20314;20315;20316;20317;20318;20319 13311;13312;13313;13314 13312 4 GQSSDNWQPR Unmodified 1173.5163 0.51629857 1385 Karp_02124 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 28.796 29.154 2 2.2582E-08 7549 20181213_JW_Orientia_Karp_1_2 195.57 76.83 34202000 10652000 6973000 4797900 1533200 0 927470 5366100 3951600 3365 1385 2957 20320;20321;20322;20323;20324;20325;20326 13315;13316;13317;13318;13319 13316 5 GQTGGDVNVEMDAAPGVDLSR Oxidation (M) 2102.9539 0.95386103 795 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6;Q16195 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 49.672 50.016 2 6.8525E-22 16877 20181213_JW_Orientia_Karp_3_1 196.65 136.17 50097000 8899200 13148000 9363200 0 0 2666500 11412000 4607800 + 3366 795 2958 20327;20328;20329;20330;20331;20332 13320;13321;13322;13323;13324 13323 460 5 GQTGGDVNVEMDAAPGVDLSR Unmodified 2086.9589 0.95894641 795 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6;Q16195 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 0 0 0 0 By MS/MS 1 55.724 56.074 2 2.535E-12 22770 20181213_JW_Orientia_Karp_1_2 196.65 52.571 0 0 0 0 0 0 0 0 0 + 3367 795 2958 20333 13325 13325 1 GQTHPHAAQTPVLYDFAGK Unmodified 2037.0068 0.0068232975 1413 Karp_02239 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 2 40.311 40.639 3;4 2.6409E-07 13208 20181213_JW_Orientia_Karp_1_2 152.59 112.05 1496900000 398070000 534320000 243610000 25144000 47407000 21910000 212690000 13779000 3368 1413 2959 20334;20335;20336;20337;20338;20339;20340;20341;20342;20343;20344;20345;20346 13326;13327;13328;13329;13330;13331 13327 6 GQTHPHAAQTPVLYDFAGKNSK Deamidation (NQ) 2367.1608 0.16075776 1413 Karp_02239 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.64 36.97 4 1.7833E-05 10242 20181213_JW_Orientia_Karp_2_2 126.25 89.14 122700000 29305000 19607000 39652000 0 11247000 3967500 12954000 5962900 3369 1413 2960 20347;20348;20349;20350;20351;20352;20353 13332;13333;13334;13335;13336;13337;13338 13335 927 7 GQTLVVQFTVK Unmodified 1218.6972 0.69722304 1636 Q53G71;V9HW88;P27797;B4DHR1 HEL-S-99n;CALR Calreticulin yes no 0 0 0 0 By MS/MS By matching 1 1 54.768 55.168 2 0.026085 20384 20181213_JW_Orientia_Karp_2_1 98.182 26.305 7641000 0 0 0 2330600 0 5310400 0 0 3370 1636 2961 20354;20355 13339 13339 1 GQVGGDVNVEMDAAPGVDLSR Oxidation (M) 2100.9746 0.97459647 790 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.307 52.614 2 1.9524E-75 19200 20181213_JW_Orientia_Karp_2_3 281.61 225.57 114170000 20180000 19250000 19863000 10389000 18960000 10088000 15438000 0 + 3371 790 2962 20356;20357;20358;20359;20360;20361;20362 13340;13341;13342;13343;13344;13345 13344 452 6 GQVGGDVNVEMDAAPGVDLSR Unmodified 2084.9797 0.97968185 790 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 0 0 By MS/MS 1 58.103 58.613 2 0.009121 20956 20181213_JW_Orientia_Karp_3_2 108.77 71.822 0 0 0 0 0 0 0 0 0 + 3372 790 2962 20363 13346 13346 1 GQVLAKPGTITPHSSFEAEVYVLTK Unmodified 2671.4221 0.4221174 1176 Karp_00632 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 54.429 54.679 3;4 0.0040799 19997 20181213_JW_Orientia_Karp_2_2 64.069 44.716 296640000 73316000 0 95842000 29668000 53572000 44244000 0 0 3373 1176 2963 20364;20365;20366;20367;20368;20369;20370;20371;20372 13347;13348;13349;13350;13351 13350 5 GQVYPWGNWFQPNRTNLWQGK 5 Deamidation (NQ) 2580.171 0.17098809 417 B4DLK7;C9JL30;H7C3B2;A8MXB9;Q75LP3;J3KQJ1;C9J660;F8WA42;Q8NBJ7;Q8NBJ7-3;A0A024RDK8;Q8NBJ7-2 SUMF2;DKFZP566I1024 Sulfatase-modifying factor 2 yes no 0 5 0 1 By MS/MS 1 77.34 77.29 2 0.026132 31458 20181213_JW_Orientia_Karp_2_2 56.956 24.68 0 0 0 0 0 0 0 0 0 3374 417 2964 20373 13352 13352 159;160;161;1437;1438 1 GQYISPFHDIPIYADK Unmodified 1862.9203 0.9202997 1804 Q5SQT6;V9HWB5;Q15181 PPA1;HEL-S-66p Inorganic pyrophosphatase yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 58.779 58.99 3 0.034149 24311 20181213_JW_Orientia_Karp_1_3 70.26 32.602 75327000 22869000 15258000 24400000 0 5136500 7664200 0 0 3375 1804 2965 20374;20375;20376;20377;20378 13353 13353 1 GRDWNVDLIPK Unmodified 1311.6935 0.69353465 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q5SX87;V9GYJ7;V9GYF8;Q5SX90;B4DHX4;P31150;Q5SX86;G5E9U5;B4DH24 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 50.451 50.784 3 0.032112 19175 20181213_JW_Orientia_Karp_1_3 81.709 19.076 6536300 0 0 1147100 3313800 0 2075400 0 0 3376 596 2966 20379;20380;20381 13354 13354 1 GRHGSGSGQSSSYGPYGSGSGWSSSR Unmodified 2531.081 0.081003886 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 1 By MS/MS By matching 1 1 29.001 29.351 4 0.032887 7072 20181213_JW_Orientia_Karp_2_1 39.785 19.71 2253400 0 0 0 1377700 0 875720 0 0 + 3377 820 2967 20382;20383 13355 13355 0 GRHGSGSGQSSSYSPYGSGSGWSSSR Unmodified 2561.0916 0.091568572 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 1 By matching By MS/MS By matching By MS/MS 1 1 1 1 28.86 29.286 4 0.00058803 6492 20181213_JW_Orientia_Karp_2_2 81.696 64.11 9971800 0 0 0 1685300 1056300 698580 6531600 0 + 3378 820 2968 20384;20385;20386;20387 13356;13357 13356 2 GRHVTVNEGDVVK Unmodified 1408.7423 0.74227576 1169 Karp_00623 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 23.145 23.56 3 0.00070214 4935 20181213_JW_Orientia_Karp_3_1 169.09 119.79 26296000 0 0 0 6530000 8983300 2401300 0 8382000 3379 1169 2969 20388;20389;20390;20391;20392;20393 13358;13359;13360;13361;13362;13363 13362 6 GRPGPVAGHHQMPR Unmodified 1495.7579 0.75788302 256 H7BXG7;A0A024RDH6;A0A024RDD3;D6REX3;O94979-7;O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;H0YAB3;D6RHZ5 SEC31A;SEC31L1 Protein transport protein Sec31A yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 18.207 18.44 4 0.040199 3343 20181213_JW_Orientia_Karp_1_2 46.88 21.232 7726000 5224700 1298000 866320 115750 0 147380 73829 0 3380 256 2970 20394;20395;20396;20397;20398;20399 13364;13365 13365 2 GRPIINLISIK Unmodified 1222.7761 0.77614207 1139 Karp_00451 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 51.056 51.416 3 0.0042176 18418 20181213_JW_Orientia_Karp_2_3 136.49 110.37 37970000 0 0 1971600 19393000 8448500 7654800 502740 0 3381 1139 2971 20400;20401;20402;20403;20404 13366;13367;13368 13368 3 GSAAVYLPVSHPEIEEFIDIR Unmodified 2341.1954 0.19541193 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 70.361 70.471 3 0.0058429 25359 20181213_JW_Orientia_Karp_3_1 76.713 47.9 93420000 34792000 0 17871000 0 13052000 7665200 20039000 0 3382 1133 2972 20405;20406;20407;20408;20409 13369;13370;13371;13372;13373;13374 13374 6 GSAESMGLEIVES Unmodified 1307.5915 0.59149692 1174 Karp_00628 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.949 66.109 2 4.2578E-35 28752 20181213_JW_Orientia_Karp_1_3 254.82 213.12 70589000 30950000 10721000 11992000 0 7176800 5980300 0 3769700 3383 1174 2973 20410;20411;20412;20413;20414;20415;20416 13375;13376;13377;13378;13379;13380;13381 13377 7 GSAESMGLEIVES Oxidation (M) 1323.5864 0.58641154 1174 Karp_00628 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 56.61 56.926 2 3.0717E-18 22998 20181213_JW_Orientia_Karp_1_3 224.86 193.23 195360000 39766000 42915000 49485000 12909000 22149000 23000000 0 5137500 3384 1174 2973 20417;20418;20419;20420;20421;20422;20423 13382;13383;13384;13385;13386;13387 13383 731 5 GSAITGPVAK Unmodified 899.50763 0.50763136 50 J3KTJ3;Q9BTQ7;A0A024R1Q8;P62829 RPL23 60S ribosomal protein L23 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 30.127 30.31 2 0.015717 8518 20181213_JW_Orientia_Karp_1_1 86.67 40.655 16417000 6132000 0 9552700 0 732790 0 0 0 3385 50 2974 20424;20425;20426 13388 13388 1 GSDEPPVFLEIHYK Unmodified 1629.8039 0.80387296 1639 V9HW38;P28838-2;P28838;H0Y9Q1;B4DQG5 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.262 56.528 3 0.029354 22742 20181213_JW_Orientia_Karp_1_3 72.891 31.49 116270000 25903000 32609000 26526000 9594100 7549000 14086000 0 0 3386 1639 2975 20427;20428;20429;20430;20431;20432 13389;13390;13391 13389 3 GSDFDCELR Unmodified 1097.4448 0.44477311 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2;B4DFF1;Q5T6W1 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By MS/MS 1 39.672 40.022 2 0.036375 12941 20181213_JW_Orientia_Karp_1_2 87.476 46.028 0 0 0 0 0 0 0 0 0 3387 63 2976 20433 13392 13392 1 GSDLDGLGILEIIR Unmodified 1469.809 0.80895834 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 75.125 75.145 2 9.1623E-09 35007 20181213_JW_Orientia_Karp_1_1 237.53 152.24 154280000 45481000 22780000 46115000 4509900 8588200 6534300 18459000 1817700 3388 1358 2977 20434;20435;20436;20437;20438;20439;20440;20441 13393;13394;13395;13396;13397 13393 5 GSEAAQLLEAADFAAR Acetyl (Protein N-term) 1660.8057 0.80566387 987 H0YNP9;Q8N4P3-2;Q8N4P3 HDDC3 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 yes no 1 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 76.213 76.213 2 0.0040497 35834 20181213_JW_Orientia_Karp_1_2 103.83 55.896 14851000 4317700 2869400 5936800 0 0 1727100 0 0 3389 987 2978 20442;20443;20444;20445 13398 13398 1 GSELNLQLIEDYLESIGVK Unmodified 2119.1049 0.10486559 1150 Karp_00511 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 2 2 2 77.629 77.612 2;3 7.22E-05 31610 20181213_JW_Orientia_Karp_2_2 138.05 97.676 25162000 0 0 0 8830300 8953700 7378100 0 0 3390 1150 2979 20446;20447;20448;20449;20450;20451 13399;13400;13401 13399 3 GSEVGFHGAAPDISVK Unmodified 1569.7787 0.77872084 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1 2 1 43.634 43.958 2;3 0.013194 15533 20181213_JW_Orientia_Karp_1_1 90.731 23.346 330460000 91877000 61655000 114600000 9020200 6625500 7600800 37338000 1742200 3391 1782 2980 20452;20453;20454;20455;20456;20457;20458;20459;20460;20461;20462 13402;13403;13404;13405;13406;13407 13402 6 GSFACQCPPGYQK Unmodified 1498.6333 0.63331893 407 B4DWH0;Q53TA7;B3KS53;Q59G97;B2R6M6;A8KAJ3;Q12805-5;Q12805-2;Q12805-4;Q12805-3;Q12805 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 36.047 36.347 2 5.1537E-25 11457 20181213_JW_Orientia_Karp_1_1 235.01 154.78 23670000 7749900 6855400 3959400 0 0 0 5105700 0 3392 407 2981 20463;20464;20465;20466;20467 13408;13409;13410;13411;13412 13408 5 GSFNLEDYYQQLQNINK Unmodified 2072.9803 0.98033378 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 69.102 69.247 2 1.6941E-101 30801 20181213_JW_Orientia_Karp_1_3 373.72 247.07 167810000 45822000 29080000 25735000 0 13346000 9835200 30352000 13642000 3393 1270 2982 20468;20469;20470;20471;20472;20473;20474 13413;13414;13415;13416;13417;13418;13419;13420 13416 8 GSGDSSQVTQVSPQR Unmodified 1531.7227 0.72266253 1463 L7UUZ7;P05106;Q1PBM2;A7U833;Q2YFE1;I3L4X8;L7UW06;B4DTY9;H3BM21;P05106-2;P05106-3 ITGB3 Integrin beta;Integrin beta-3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 30.444 30.626 2 0.0012089 8602 20181213_JW_Orientia_Karp_1_1 131.06 67.366 6018000 2486200 1957100 1574800 0 0 0 0 0 3394 1463 2983 20475;20476;20477 13421;13422;13423 13421 3 GSGGGSSGGSIGGR Unmodified 1091.4956 0.49556312 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 14.418 14.813 2 7.821E-08 2923 20181213_JW_Orientia_Karp_1_1 189.17 120.38 168930000 21839000 14217000 14473000 11340000 13455000 12599000 8417600 72593000 + 3395 995;996 2984 20478;20479;20480;20481;20482;20483;20484;20485 13424;13425;13426;13427;13428;13429;13430;13431;13432;13433 13424 10 GSGGGSSGGSIGGRGSSSGGVK Unmodified 1750.8194 0.81941646 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 17.929 18.158 3 0.033875 3054 20181213_JW_Orientia_Karp_2_1 60.334 32.123 6980400 1018000 851730 879470 2780600 0 0 1450600 0 + 3396 995;996 2985 20486;20487;20488;20489;20490 13434 13434 1 GSGGTAEHPFTVEEFVLPK Unmodified 2000.9844 0.98435652 786 CON__ENSEMBL:ENSBTAP00000024146 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 58.505 58.688 3 0.010518 24503 20181213_JW_Orientia_Karp_1_2 71.402 46.037 60573000 22245000 14593000 23735000 0 0 0 0 0 + 3397 786 2986 20491;20492;20493 13435 13435 1 GSGSGQSPSSGQHGTGFGR Unmodified 1746.767 0.76698696 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 21.328 21.694 3 0.0046613 4290 20181213_JW_Orientia_Karp_3_1 86.016 45.215 17053000 1174500 1115500 0 2632300 2176700 3130300 3179300 3644500 + 3398 820 2987 20494;20495;20496;20497;20498;20499;20500 13436;13437;13438;13439;13440;13441 13440 6 GSGSGQSPSYGR Unmodified 1138.5003 0.50031415 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 19.439 19.727 2 0.02256 3625 20181213_JW_Orientia_Karp_2_1 84.31 53.021 1420200 304260 0 0 340190 137340 0 638360 0 + 3399 820 2988 20501;20502;20503;20504 13442;13443;13444 13442 3 GSGSGSGGGGYSSGGGSR Unmodified 1429.5818 0.58181195 814 CON__Q3TTY5 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 15.251 15.375 2 1.2631E-06 2601 20181213_JW_Orientia_Karp_1_1 156.2 113.86 21681000 21167000 0 0 513800 0 0 0 0 + 3400 814 2989 20505;20506 13445;13446 13445 2 GSGTAEVELK Unmodified 989.50294 0.50293991 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;H3BTN5;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS 1 31.379 31.379 2 0.0015668 9011 20181213_JW_Orientia_Karp_1_1 117.53 49.629 8012900 8012900 0 0 0 0 0 0 0 3401 1597 2990 20507 13447 13447 1 GSLDTMLGLLQSDLSR Unmodified 1704.8716 0.87163495 14 H3BQC4;A0A024QZE7;O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 75.231 75.251 2 0.039383 34836 20181213_JW_Orientia_Karp_1_3 80.371 18.032 71875000 25274000 8086700 18224000 5609200 3038600 3305000 6386700 1950100 3402 14 2991 20508;20509;20510;20511;20512;20513;20514;20515 13448 13448 0 GSLGATGEIK Unmodified 931.49746 0.4974606 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 31.113 31.263 2 0.036369 8510 20181213_JW_Orientia_Karp_1_3 74.165 20.39 12601000 5156100 0 7061800 0 0 382860 0 0 3403 1782 2992 20516;20517;20518 13449 13449 1 GSLGGGFSSGGFSGGSFSR Unmodified 1706.7649 0.76486169 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 4 3 3 2 2 53.58 53.931 2 2.2556E-17 21261 20181213_JW_Orientia_Karp_1_1 201.72 136.45 2023000000 245010000 349460000 455560000 242820000 276270000 272810000 167000000 14080000 + 3404 798 2993 20519;20520;20521;20522;20523;20524;20525;20526;20527;20528;20529;20530;20531;20532;20533;20534;20535;20536;20537;20538 13450;13451;13452;13453;13454;13455;13456;13457;13458;13459;13460;13461;13462 13450 12 GSNSGMDSNIDLTIVEDEEEESVALEQAQK Oxidation (M) 3252.4464 0.44635541 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 68.518 68.737 3 4.2445E-10 24410 20181213_JW_Orientia_Karp_3_1 125.15 97.06 33571000 11420000 5758400 0 2427100 0 4163900 5773800 4028400 3405 345 2994 20539;20540;20541;20542;20543;20544 13463;13464;13465;13466;13467;13468 13466 232 6 GSPNANEPPLVFVGK Unmodified 1524.7936 0.79364262 1639 V9HW38;P28838-2;P28838;H0Y9Q1;B4DQG5 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 55.634 55.834 2 0.0012089 22654 20181213_JW_Orientia_Karp_1_2 131.06 83.758 42169000 8703200 20092000 11263000 0 2110600 0 0 0 3406 1639 2995 20545;20546;20547;20548 13469;13470 13469 2 GSRGGSGGSYGGGGSGGGYGGGSGSR Unmodified 2090.875 0.87503386 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 18.153 18.562 3 3.4458E-07 3539 20181213_JW_Orientia_Karp_2_3 121.62 73.198 9887600 0 1257700 1214800 2005100 752880 1707400 1825400 1124400 + 3407 1653 2996 20549;20550;20551;20552;20553;20554;20555 13471;13472;13473;13474;13475;13476;13477 13475 7 GSSGGGCFGGSSGGYGGLGGFGGGSFR Unmodified 2341.9771 0.97705609 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 57.336 57.661 2;3 3.7181E-54 21932 20181213_JW_Orientia_Karp_2_3 263.47 223.6 187950000 36243000 36126000 31517000 23484000 27894000 21076000 1396800 10211000 + 3408 798 2997 20556;20557;20558;20559;20560;20561;20562;20563;20564;20565;20566;20567;20568;20569;20570 13478;13479;13480;13481;13482;13483;13484;13485;13486;13487;13488 13486 11 GSSLGMVMR Oxidation (M) 952.44702 0.44702171 1458 Karp_02603 yes yes 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 34.257 34.557 2 0.0020608 10682 20181213_JW_Orientia_Karp_1_1 116.25 57.333 61251000 12717000 46255000 0 2278800 0 0 0 0 3409 1458 2998 20571;20572;20573 13489;13490 13489 1074;1075 2 GSSLGMVMR 2 Oxidation (M) 968.44194 0.44193633 1458 Karp_02603 yes yes 0 0 2 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 1 1 1 1 25.893 26.274 2 0.0018549 5898 20181213_JW_Orientia_Karp_2_1 114.5 68.369 63183000 159960 18494000 0 11043000 6974800 5675100 13138000 7698000 3410 1458 2998 20574;20575;20576;20577;20578;20579;20580;20581 13491;13492;13493;13494;13495 13492 1074;1075 5 GSSLGMVMR Unmodified 936.45211 0.45210709 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By matching 1 1 41.779 42.053 2 0.014192 14058 20181213_JW_Orientia_Karp_1_2 87.696 30.233 20835000 0 12266000 8568700 0 0 0 0 0 3411 1458 2998 20582;20583 13496;13497 13497 2 GSSSGGGYSSGSSSYGSGGR Unmodified 1739.6983 0.69829827 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 23.662 24.014 2 0.00018773 5736 20181213_JW_Orientia_Karp_1_1 123.72 92.651 67790000 13850000 8575200 0 13737000 7717800 10402000 192420 13316000 + 3412 804;1657 2999 20584;20585;20586;20587;20588;20589;20590 13498;13499;13500 13498 3 GSTALSEQQVLTIAR Unmodified 1572.8471 0.84713476 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 53.037 53.299 2 5.4459E-05 21410 20181213_JW_Orientia_Karp_1_1 187.62 115.53 52559000 12756000 15146000 22807000 0 1498700 0 0 350850 3413 1270 3000 20591;20592;20593;20594;20595 13501;13502 13501 2 GSTAPVGGGAFPTIVER Unmodified 1614.8366 0.83657007 1802 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 55.714 55.981 2 0.015809 22755 20181213_JW_Orientia_Karp_1_2 86.944 57.873 447880000 128340000 116520000 157090000 12400000 20016000 13505000 0 0 3414 1802 3001 20596;20597;20598;20599;20600;20601 13503 13503 1 GSTHPQPGVSPPAAPAAPGPK Unmodified 1919.9854 0.98535957 336 Q53TX0;A8K132;O94925-2;O94925-3;O94925 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 36.789 37.119 3 0.0068249 11828 20181213_JW_Orientia_Karp_1_1 77.554 50.527 62900000 19345000 23717000 11073000 0 2008600 311650 5402900 1042300 3415 336 3002 20602;20603;20604;20605;20606;20607;20608 13504 13504 1 GSVQYLPDWDK Unmodified 1306.6194 0.61936665 816 CON__Q58D62 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 54.605 54.854 2 0.0046913 21748 20181213_JW_Orientia_Karp_1_3 106.62 55.342 133500000 53119000 0 43728000 17750000 0 18907000 0 0 + 3416 816 3003 20609;20610;20611;20612 13505;13506 13505 2 GSVVNVNPTNTRPQSDTPEIR Unmodified 2280.1458 0.14583597 717 E7ENQ1;G3XAA2;H7C360;V9HWH3;B7Z3V5;Q53TX8;E7EN19;E7ESS2;B7Z388;G5E948;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EX83;Q5MD60;C9J840;H7C0P6 MAP4K4;HEL-S-31 Mitogen-activated protein kinase kinase kinase kinase 4 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 41.889 42.219 3 0.030719 14580 20181213_JW_Orientia_Karp_1_1 66.201 42.518 28292000 11502000 4220500 7870000 413640 0 0 4286400 0 3417 717 3004 20613;20614;20615;20616;20617 13507;13508 13507 2 GSYGDLGGPIITTQVTIPK Unmodified 1916.0255 0.025493054 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2;B4DFF1;B3KU16;S4R359 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.163 65.37 2 1.4771E-17 28173 20181213_JW_Orientia_Karp_1_3 219.41 143.52 317130000 100140000 80389000 70657000 2166700 16533000 15134000 32103000 0 3418 63 3005 20618;20619;20620;20621;20622;20623;20624 13509;13510;13511;13512;13513;13514;13515 13511 7 GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unmodified 3311.3008 0.30084566 995;996 H6VRG0;H6VRG1;P04264;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 3 1 32.532 32.993 3 2.7728E-17 9054 20181213_JW_Orientia_Karp_1_1 138.93 120.84 441210000 3414400 5228000 0 262910000 147050000 0 11406000 11199000 + 3419 995;996 3006 20625;20626;20627;20628;20629;20630;20631;20632;20633;20634;20635;20636 13516;13517;13518;13519;13520;13521;13522;13523 13517 7 GSYVSIHSSGFR Unmodified 1295.6258 0.62584901 245 Q5STU3;A0A024RCM3;B4DX78;O00148;Q13838;Q13838-2;F6WLT2;O00148-2;F6S4E6;F6TRA5;K7EQN7;Q59G92;A0A024R7H0;B1Q2N1;K7ENP6;F6QWI5;K7EL56;K7EIL8;F6U6E2;K7EN69;F6S2B7;F6SXL5;B4DH55;Q7KYK3;B4DF34;K7EN25;F6QYI9;K7EPJ3;F6R6M7 DDX39B;hCG_2005638;DDX39A;DDX39;BAT1 ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B yes no 0 0 0 0 By MS/MS 1 35.495 35.694 2 0.0092315 10607 20181213_JW_Orientia_Karp_1_3 115.7 50.542 0 0 0 0 0 0 0 0 0 3420 245 3007 20637 13524 13524 1 GTAAAAAAAAAAAAAK Unmodified 1227.6571 0.65714914 389 A8K7N0 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 42.634 42.904 2 7.4691E-28 14449 20181213_JW_Orientia_Karp_1_2 233.13 195.63 123410000 60150000 22864000 20223000 0 3761600 0 16409000 0 3421 389 3008 20638;20639;20640;20641;20642;20643 13525;13526;13527;13528 13526 4 GTALVVWDPYAMPIVTEK Oxidation (M) 2005.0231 0.023050213 1169 Karp_00623 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 70.286 70.446 2 0.00027712 31638 20181213_JW_Orientia_Karp_1_3 128.95 83.836 68195000 21184000 9652600 14931000 0 7401700 0 11006000 4019800 3422 1169 3009 20644;20645;20646;20647;20648;20649 13529;13530;13531;13532 13530 707 4 GTASFSDHANK Unmodified 1133.5102 0.51015055 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 17.502 17.746 2;3 2.2023E-05 3270 20181213_JW_Orientia_Karp_3_1 168.26 115.86 16834000 4364300 6415300 2968400 1818600 581340 0 685550 0 3423 1449 3010 20650;20651;20652;20653;20654;20655;20656;20657;20658 13533;13534;13535;13536;13537;13538 13538 6 GTDNEVAALQPPVVQLHDSNPYPR Unmodified 2616.2932 0.29322849 835 D3DSM4;D3DSM5;P39060-2;P39060-1;P39060;H7BXV5 COL18A1 Collagen alpha-1(XVIII) chain;Endostatin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.161 57.462 3 0.0042846 20194 20181213_JW_Orientia_Karp_3_2 71.042 40.275 218130000 69308000 45147000 33978000 12503000 16475000 13309000 0 27414000 3424 835 3011 20659;20660;20661;20662;20663;20664;20665 13539;13540;13541;13542;13543;13544;13545;13546 13546 8 GTDVNVFNTILTTR Deamidation (NQ) 1550.794 0.79403656 1548 Q5TZZ9;P04083;B5BU38;B4DL19 ANXA1 Annexin;Annexin A1 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 65.661 65.85 2 1.8328E-17 27665 20181213_JW_Orientia_Karp_1_2 219.74 139.64 77443000 28852000 16294000 11008000 2714400 5929600 4281900 8362500 0 3425 1548 3012 20666;20667;20668;20669;20670;20671;20672;20673;20674;20675;20676;20677 13547;13548;13549;13550;13551;13552;13553;13554;13555;13556 13550 1032 10 GTDVNVFNTILTTR Unmodified 1549.81 0.81002097 1548 Q5TZZ9;P04083;B5BU38;B4DL19 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 67.001 67.217 2 3.2991E-105 26351 20181213_JW_Orientia_Karp_2_2 322.7 241.87 678150000 168920000 176890000 138900000 0 109100000 53143000 3725300 27470000 3426 1548 3012 20678;20679;20680;20681;20682;20683;20684;20685 13557;13558;13559;13560;13561;13562;13563;13564;13565;13566 13563 10 GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK Unmodified 3314.5426 0.54263906 371 A8K5M4;Q13177 PAK2 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 49.172 49.362 4 0.00059464 18175 20181213_JW_Orientia_Karp_1_3 68.361 45.306 208340000 65004000 53766000 69176000 0 8648900 11749000 0 0 3427 371 3013 20686;20687;20688;20689;20690 13567 13567 1 GTEDFIVESLDASFR Unmodified 1684.7944 0.79443049 459 C9J3L8;C9J5W0;B2R6N9;E9PAL7;C9IZQ1;P43307;P43307-2 SSR1 Translocon-associated protein subunit alpha yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 73.459 73.498 2 7.6442E-05 29752 20181213_JW_Orientia_Karp_3_2 152.96 85.706 51985000 13410000 13269000 21017000 0 0 0 0 4289800 3428 459 3014 20691;20692;20693;20694 13568;13569 13569 2 GTEWVDPEDPTVIAENELLGAAAAIEAAAK Unmodified 3050.5084 0.50842581 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 1 79.112 79.11 3 0.037645 37111 20181213_JW_Orientia_Karp_1_3 34.821 8.6917 4401100 0 0 4401100 0 0 0 0 0 3429 2016 3015 20695 13570 13570 1 GTGASGSFK Unmodified 810.38718 0.38718187 1604;1605;1606;291;1763 P16402;A1L407;P22492;Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16401;P16403;Q02539 HIST1H1D;HIST1H1T;HIST1H1E;HIST1H1B;HIST1H1C;HIST1H1A Histone H1.3;Histone H1t;Histone H1.4;Histone H1.5;Histone H1.2;Histone H1.1 no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 16.963 17.242 2 0.0026355 3012 20181213_JW_Orientia_Karp_2_3 115.49 87.387 641500000 250270000 252140000 124910000 6966500 1281500 2582800 3351000 0 3430 1605;291;1604;1606;1763 3016 20696;20697;20698;20699;20700;20701;20702 13571;13572;13573;13574 13574 4 GTGASGSFKLNK Unmodified 1165.6091 0.60913632 1604;1605;1606;291;1763 P16402;Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16401;P16403;Q02539 HIST1H1D;HIST1H1E;HIST1H1B;HIST1H1C;HIST1H1A Histone H1.3;Histone H1.4;Histone H1.5;Histone H1.2;Histone H1.1 no no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 2 2 2 2 1 1 25.647 25.964 2;3 0.0065484 6168 20181213_JW_Orientia_Karp_1_3 126.03 69.215 63106000 12030000 29857000 12390000 2603300 2887700 820790 1859400 657870 3431 1605;291;1604;1606;1763 3017 20703;20704;20705;20706;20707;20708;20709;20710;20711;20712;20713;20714 13575;13576 13576 2 GTGLQPGEEELPDIAPPLVTPDEPK Unmodified 2598.3065 0.30647852 1673 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 71.677 71.759 3 0.0012195 32513 20181213_JW_Orientia_Karp_1_3 77.657 38.78 35759000 18639000 7139700 9980000 0 0 0 0 0 3432 1673 3018 20715;20716;20717 13577;13578;13579;13580 13580 4 GTGNSEIVLDR Unmodified 1159.5833 0.5833155 1333 Karp_01373 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 38.159 38.509 2 0.00025029 12000 20181213_JW_Orientia_Karp_1_3 152.69 94.097 41851000 16345000 10926000 8409600 3354200 0 0 2816600 0 3433 1333 3019 20718;20719;20720;20721;20722 13581;13582 13581 1 GTIAAQYIDEGIAK Unmodified 1448.7511 0.75110911 1208 Karp_00860 yes yes 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 51.635 51.884 2 0.00040396 18587 20181213_JW_Orientia_Karp_2_1 148.13 98.096 77064000 41252000 0 14330000 21481000 0 0 0 0 3434 1208 3020 20723;20724;20725 13583;13584 13584 2 GTIEILSDVQLIK Unmodified 1427.8235 0.82354577 229 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q53HK9;F8VPE8;F8VW21;B4E3D5;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.438 69.596 2 7.1526E-05 24886 20181213_JW_Orientia_Karp_3_1 167.09 71.586 28476000 6795800 5494300 5724800 641910 1849200 881830 5390500 1697300 3435 229 3021 20726;20727;20728;20729;20730;20731;20732;20733 13585;13586;13587;13588 13587 4 GTIQVITQGTSLK Unmodified 1344.7613 0.76127986 1505 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q9UMY3;Q8N5M8 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 48.01 48.343 2 1.8134E-07 18078 20181213_JW_Orientia_Karp_1_1 213.84 160.09 69622000 27034000 42074000 0 0 0 0 513810 0 3436 1505 3022 20734;20735;20736 13589;13590 13589 2 GTITDAPGFDPLR Unmodified 1358.683 0.68302954 618 B4DPJ2;Q6ICS0;Q5T0G8;Q59EP1;B7Z6L0;P50995-2;P50995;Q5T0G9 ANXA11 Annexin;Annexin A11 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 57.888 58.189 2 0.0010194 24163 20181213_JW_Orientia_Karp_1_2 140.49 81.786 59581000 15294000 15216000 15054000 2418600 4993600 4000500 0 2605300 3437 618 3023 20737;20738;20739;20740;20741;20742;20743 13591;13592;13593;13594 13592 4 GTIVVIK Unmodified 728.47963 0.47962569 1424 Karp_02310 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.716 39.891 2 0.020952 13385 20181213_JW_Orientia_Karp_1_1 101.21 38.233 19164000 10602000 8562400 0 0 0 0 0 0 3438 1424 3024 20744;20745;20746 13595;13596;13597 13595 3 GTLLALER Unmodified 871.51272 0.51271674 186 A0A024R9Q1;P07996;A0PJG0 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 47.534 47.701 2 0.017897 17635 20181213_JW_Orientia_Karp_1_1 91.069 8.3973 28720000 6261800 21297000 0 0 1160600 0 0 0 + 3439 186 3025 20747;20748;20749 13598;13599 13598 2 GTLSDEHAGVISVLAQQAAK Unmodified 1994.0433 0.043268383 1508 O43504;R4GMU8;E9PLX3 LAMTOR5 Ragulator complex protein LAMTOR5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.708 54.024 3 0.0027504 19895 20181213_JW_Orientia_Karp_2_3 125.41 75.784 96281000 24396000 29608000 18354000 7748800 5829100 10007000 0 338260 3440 1508 3026 20750;20751;20752;20753;20754;20755;20756 13600;13601;13602;13603;13604;13605;13606 13606 7 GTLSGWILSK Unmodified 1060.5917 0.59169534 1637 P27824;P27824-2;Q16094;H0Y9Q7;D6RB85;D6RDP7;D6RAU8;D6RAQ8 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.317 57.61 2 9.767E-07 23492 20181213_JW_Orientia_Karp_1_3 187.22 93.788 156130000 44803000 0 45677000 14685000 13157000 26959000 0 10852000 3441 1637 3027 20757;20758;20759;20760;20761;20762;20763 13607;13608;13609;13610;13611;13612;13613 13609 7 GTLVQTK Unmodified 745.4334 0.43340378 1604;1605;1606;291;1763 P16402;Q4VB24;B2R984;A3R0T8;P10412;P16401;P16403;Q02539 HIST1H1D;HIST1H1E;HIST1H1B;HIST1H1C;HIST1H1A Histone H1.3;Histone H1.4;Histone H1.5;Histone H1.2;Histone H1.1 no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 1 1 2 21.988 22.37 2 0.012793 3397 20181213_JW_Orientia_Karp_3_2 133.81 39.806 602140000 328730000 183230000 27064000 16814000 7834900 7389200 14332000 16744000 3442 1605;291;1604;1606;1763 3028 20764;20765;20766;20767;20768;20769;20770;20771;20772;20773 13614;13615;13616;13617;13618 13618 5 GTLVQTKGTGASGSFK Unmodified 1537.81 0.81002097 1604;1605;1606;291;1763 P16402;Q4VB24;B2R984;A3R0T8;P10412;P16401;P16403;Q02539 HIST1H1D;HIST1H1E;HIST1H1B;HIST1H1C;HIST1H1A Histone H1.3;Histone H1.4;Histone H1.5;Histone H1.2;Histone H1.1 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 30.036 30.319 2;3 2.8473E-05 7993 20181213_JW_Orientia_Karp_1_3 185.32 95.438 185150000 86124000 178920 88343000 4201500 4231100 1325200 745710 0 3443 1605;291;1604;1606;1763 3029 20774;20775;20776;20777;20778;20779;20780;20781;20782;20783 13619;13620;13621 13621 3 GTNESLER Unmodified 904.42502 0.42502394 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;B4E192;B4DJW0;P14136-3;P14136;P14136-2;K7EKH6 HEL113;VIM;GFAP Vimentin;Glial fibrillary acidic protein yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 19.842 20.135 2 0.0044042 3663 20181213_JW_Orientia_Karp_2_3 131.62 38.421 42914000 17568000 10367000 7146600 4425100 0 3336000 0 71175 3444 1571 3030 20784;20785;20786;20787;20788;20789 13622;13623 13623 2 GTNYLADVFEK Unmodified 1255.6085 0.60846762 1648 P31151 S100A7 Protein S100-A7 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 58.432 58.719 2 0.00029792 20935 20181213_JW_Orientia_Karp_3_2 150.09 98.901 33738000 6311800 6501900 5059000 1624400 5058300 6410400 0 2771900 3445 1648 3031 20790;20791;20792;20793;20794;20795;20796 13624;13625 13625 2 GTSQNDPNWVVR Unmodified 1371.6531 0.6531264 186 A0A024R9Q1;P07996;P07996-2;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 41.216 41.523 2 1.5061E-07 13615 20181213_JW_Orientia_Karp_1_3 195.27 112.84 509940000 154690000 144420000 105680000 12278000 15041000 0 77835000 0 + 3446 186 3032 20797;20798;20799;20800;20801;20802;20803;20804 13626;13627;13628;13629;13630;13631;13632 13628 7 GTVLALTENNFDDTIAEGITFIK Unmodified 2481.2639 0.26388542 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 75.185 75.185 2 6.0436E-83 28065 20181213_JW_Orientia_Karp_3_1 274.02 223.12 72777000 24073000 26262000 0 0 7070200 3995600 11377000 0 3447 25 3033 20805;20806;20807;20808;20809 13633;13634 13634 2 GTVLALTENNFDDTIAEGITFIK Deamidation (NQ) 2482.2479 0.24790101 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 1 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 75.969 75.949 3 0.0062586 28578 20181213_JW_Orientia_Karp_3_1 86.539 48.122 43580000 0 0 23200000 1915000 5133800 3651900 9679100 0 3448 25 3033 20810;20811;20812;20813;20814 13635 13635 1;2 1 GTVLMNLGQFQEAIK Unmodified 1647.8654 0.86542736 1152;1259 Karp_01552;Karp_00538;Karp_00993 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 66.473 66.674 2 1.5271E-77 29212 20181213_JW_Orientia_Karp_1_3 318.47 197.62 65752000 20755000 0 26754000 4237800 6367300 2508000 2270700 2860000 3449 1152;1259 3034 20815;20816;20817;20818;20819;20820;20821 13636;13637;13638;13639;13640 13637 5 GTVTDFPGFDER Unmodified 1339.6044 0.60444487 1573 V9HWE0;P08758;D6RBE9;E9PHT9;B4DNG6;D6RCN3 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 55.506 55.892 2 4.9709E-05 20846 20181213_JW_Orientia_Karp_2_3 167.12 119.51 1084800000 255250000 242110000 236090000 108770000 112380000 115950000 7060500 7235300 3450 1573 3035 20822;20823;20824;20825;20826;20827;20828;20829;20830 13641;13642;13643;13644;13645;13646;13647 13646 7 GTVTNGIISSK Unmodified 1075.5873 0.58733824 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 35.303 35.59 2 0.00029685 11118 20181213_JW_Orientia_Karp_1_1 150.15 97.215 96314000 42648000 45576000 0 4214000 3875600 0 0 0 3451 1107 3036 20831;20832;20833;20834;20835 13648;13649;13650 13648 3 GTVTNGIISSK Deamidation (NQ) 1076.5714 0.57135383 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 4 4 4 3 5 2 39.634 39.966 2 8.2797E-07 14064 20181213_JW_Orientia_Karp_1_2 183.85 128.48 2371500000 862250000 614850000 391640000 170390000 60729000 33433000 236510000 1650800 3452 1107 3036 20836;20837;20838;20839;20840;20841;20842;20843;20844;20845;20846;20847;20848;20849;20850;20851;20852;20853;20854;20855;20856;20857;20858;20859;20860;20861;20862;20863;20864;20865 13651;13652;13653;13654;13655;13656;13657;13658;13659;13660;13661;13662;13663;13664;13665;13666;13667;13668;13669;13670;13671;13672 13657 468 22 GTVVSITHDR Unmodified 1083.5673 0.5672715 1315 Karp_01271 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 27.435 27.737 2 0.0015668 6868 20181213_JW_Orientia_Karp_1_2 117.53 57.407 29722000 10146000 5351300 9530100 0 0 1988500 0 2706000 3453 1315 3037 20866;20867;20868;20869;20870 13673;13674;13675;13676 13673 4 GTVVSVMQVGYK Oxidation (M) 1282.6591 0.65912298 1144 Karp_00459 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 41.998 42.328 2 2.2937E-23 13478 20181213_JW_Orientia_Karp_3_1 237.51 179.92 549160000 147880000 64467000 133310000 33499000 29009000 0 128690000 12296000 3454 1144 3038 20871;20872;20873;20874;20875;20876;20877;20878 13677;13678;13679;13680;13681;13682;13683;13684 13683 677 7 GTVVSVMQVGYK Unmodified 1266.6642 0.66420836 1144 Karp_00459 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.328 50.636 2 4.0335E-17 19173 20181213_JW_Orientia_Karp_1_2 232.88 169.46 835800000 189650000 217790000 161720000 117850000 45787000 97426000 5568600 0 3455 1144 3038 20879;20880;20881;20882;20883;20884;20885 13685;13686;13687;13688;13689;13690;13691;13692;13693 13686 9 GTWDHGASDVSLYR Unmodified 1562.7114 0.71136956 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y4P7 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 43.983 44.283 3 0.00229 14470 20181213_JW_Orientia_Karp_3_1 99.941 72.804 46300000 12982000 17570000 10452000 0 0 0 5296000 0 3456 852 3039 20886;20887;20888;20889 13694 13694 1 GVAALTSDPAVQAIVLDTASDVLDK Unmodified 2468.301 0.30099921 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 75.346 75.372 3 0.011809 34854 20181213_JW_Orientia_Karp_1_3 58.054 28.418 78963000 22603000 22617000 26243000 0 0 1744500 5538500 216330 3457 2016 3040 20890;20891;20892;20893;20894;20895 13695 13695 1 GVAMNPVDHPHGGGEGK Oxidation (M) 1673.758 0.75800217 1239 Karp_00906 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 19.254 19.662 3 0.012758 3185 20181213_JW_Orientia_Karp_2_2 86.548 58.402 197550000 32909000 28111000 34433000 20729000 16586000 15399000 22814000 26570000 3458 1239 3041 20896;20897;20898;20899;20900;20901;20902;20903;20904 13696;13697;13698;13699;13700;13701;13702 13700 801 7 GVAPLWMR Oxidation (M) 944.49021 0.49020716 223 F8VVM2;Q8NCF7;Q53HC3;B2RE88;A0A024RBE8;A0A024RBH9;Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 46.872 47.102 2 0.01549 16648 20181213_JW_Orientia_Karp_1_3 89.903 45.526 58382000 27942000 17467000 10062000 1923400 987900 0 0 0 3459 223 3042 20905;20906;20907;20908;20909 13703;13704;13705 13705 170 3 GVDDLDFFIGDEAIEKPTYATK Unmodified 2443.1795 0.17948709 201 A0A024RAI1;P61158;B4DXW1;Q59FV6 ACTR3 Actin-related protein 3 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 69.01 69.162 3 0.00014636 31092 20181213_JW_Orientia_Karp_1_2 117.84 92.652 136650000 41175000 33902000 0 0 9103700 4849300 35637000 11978000 3460 201 3043 20910;20911;20912;20913;20914;20915 13706;13707;13708;13709 13707 4 GVDEATIIDILTK Unmodified 1386.7606 0.76061116 1548 Q5TZZ9;P04083;B5BU38;Q5T3N1;Q5T3N0 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.489 73.519 2 2.1463E-72 29731 20181213_JW_Orientia_Karp_3_2 289.22 195.62 1249100000 267920000 219550000 176590000 0 117700000 142730000 285900000 38745000 3461 1548 3044 20916;20917;20918;20919;20920;20921;20922 13710;13711;13712;13713;13714;13715;13716 13716 7 GVDEVTIVNILTNR Deamidation (NQ) 1542.8253 0.82533668 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;H0YKS4;B4DNH8;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YKL9;H0YMW4;H0YKV8;H0YMD9 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 71.694 71.777 2 2.0233E-34 32815 20181213_JW_Orientia_Karp_1_1 247.13 179.93 45664000 19403000 11986000 14274000 0 0 0 0 0 3462 124 3045 20923;20924;20925 13717;13718;13719 13717 51 3 GVDEVTIVNILTNR Unmodified 1541.8413 0.8413211 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;H0YKS4;B4DNH8;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YKL9;H0YMW4;H0YKV8;H0YMD9 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 71.782 71.87 2;3 2.6116E-195 32536 20181213_JW_Orientia_Karp_1_3 386.44 245.6 671080000 84409000 255220000 16479000 0 15038000 2957900 296970000 0 3463 124 3045 20926;20927;20928;20929;20930;20931;20932;20933;20934;20935;20936;20937 13720;13721;13722;13723;13724;13725;13726;13727 13722 8 GVDIVDDHSNNMSSEMK Unmodified 1876.7931 0.79312663 1126 Karp_00329 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 41.137 41.497 3 0.025119 13678 20181213_JW_Orientia_Karp_1_2 56.959 33.951 53981000 17782000 18941000 11765000 1453000 0 0 3697200 343000 3464 1126 3046 20938;20939;20940;20941;20942;20943 13728;13729 13728 2 GVDIVDDHSNNMSSEMK 2 Oxidation (M);Deamidation (NQ) 1909.767 0.76697146 1126 Karp_00329 yes yes 0 1 2 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 33.532 33.89 3 0.015039 8687 20181213_JW_Orientia_Karp_2_2 80.719 63.018 78363000 22366000 8819100 23285000 7549500 6655900 2262500 5667700 1757900 3465 1126 3046 20944;20945;20946;20947;20948;20949;20950;20951 13730;13731 13730 510 654;655 2 GVDIVMDPLGGSDTAK Oxidation (M) 1589.7607 0.76068752 60 A0A024R1Z6;Q99536;Q99536-3;B3KUF8;Q99536-2;K7ESA3;K7ENX2;K7EM19 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 54.806 55.122 2 2.9879E-08 21863 20181213_JW_Orientia_Karp_1_3 179.93 116.61 93601000 22171000 23786000 33596000 2900200 5746300 3580800 0 1820600 3466 60 3047 20952;20953;20954;20955;20956;20957;20958 13732;13733;13734;13735;13736;13737 13734 62 6 GVDIVMDPLGGSDTAK Unmodified 1573.7658 0.76577289 60 A0A024R1Z6;Q99536;Q99536-3;B3KUF8;Q99536-2;K7ESA3;K7ENX2;K7EM19 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 62.566 62.749 2 0.00055775 27349 20181213_JW_Orientia_Karp_1_1 133.88 85.689 82141000 21248000 26211000 34682000 0 0 0 0 0 3467 60 3047 20959;20960;20961 13738;13739 13738 2 GVDLQENNPASR Unmodified 1298.6215 0.62149192 56 A0A024R1U4;P51148;P51148-2;K7EIP6 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 34.793 35.067 2 0.00064432 10316 20181213_JW_Orientia_Karp_1_3 145.09 95.667 15972000 0 5731500 10240000 0 0 0 0 0 3468 56 3048 20962;20963;20964;20965;20966 13740;13741;13742;13743;13744 13742 5 GVDVVVGGHSNTFLYTGNPPSK Unmodified 2244.1175 0.11749596 487 Q6NZX3;Q53Z63;B2RBH2;P21589-2;P21589 NT5E 5'-nucleotidase yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 51.669 52.046 3 0.0010239 20563 20181213_JW_Orientia_Karp_1_1 98.562 46.956 34511000 7261200 0 13403000 5773400 0 3771800 3553500 748200 3469 487 3049 20967;20968;20969;20970;20971;20972;20973 13745;13746;13747 13745 3 GVEASSFEAIVDGR Unmodified 1435.6943 0.69432251 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 58.301 58.575 2 0.00042425 24426 20181213_JW_Orientia_Karp_1_2 147.71 104.42 31025000 0 11119000 19906000 0 0 0 0 0 3470 1169 3050 20974;20975;20976;20977 13748;13749;13750;13751 13749 4 GVEGLIDIENPNR Unmodified 1424.726 0.72595699 1792 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 57.513 57.83 2 5.6546E-05 21938 20181213_JW_Orientia_Karp_2_1 169.82 90.883 14348000 0 0 0 3094000 7046600 4207600 0 0 3471 1792 3051 20978;20979;20980 13752;13753;13754 13752 3 GVEICIATPGR Unmodified 1171.6019 0.60194245 1929 Q92841;H3BLZ8;Q59F66;Q92841-1;Q92841-3;Q92841-2;B4DZQ7;Q7Z2V5;Q59E92;B4DNG2;B4DN41;J3KTA4;B5BUE6;P17844-2;P17844;J3QSF1;J3KRZ1 DDX17;DKFZp686J01190;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 49.452 49.734 2 0.035721 19182 20181213_JW_Orientia_Karp_1_1 76.228 21.452 24790000 10132000 5101600 6631700 0 0 1410200 0 1514800 3472 1929 3052 20981;20982;20983;20984;20985 13755 13755 1 GVEYDQYFETLPNNVK Unmodified 1914.9 0.89995819 1194 Karp_00806 yes yes 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 61.056 61.456 2 0.004603 23662 20181213_JW_Orientia_Karp_2_2 124.51 81.539 8410200 0 5613600 0 2796700 0 0 0 0 3473 1194 3053 20986;20987;20988 13756;13757 13757 2 GVGASGSFR Unmodified 836.41407 0.41406533 1565 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 26.635 26.945 2 0.00078441 6570 20181213_JW_Orientia_Karp_1_2 145.34 68.864 297070000 23742000 229760000 24058000 2896200 0 0 16613000 0 3474 1565 3054 20989;20990;20991;20992;20993;20994 13758;13759;13760;13761;13762;13763 13759 6 GVGDDQLGEESEER Unmodified 1518.6434 0.64340915 460 H0YF90;Q96AH2;Q6I9U3;Q53GY9;B2R6S2;P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 35.43 35.773 2 7.6719E-73 10693 20181213_JW_Orientia_Karp_1_2 291.22 151.05 58015000 15354000 13373000 18437000 0 0 5207400 4603200 1040300 3475 460 3055 20995;20996;20997;20998;20999;21000 13764;13765;13766;13767;13768 13765 4 GVGDGTVSWGLEDDEDMTLTR Oxidation (M) 2267.9852 0.98522074 952 G3V2F7;Q13404;Q13404-7;Q13404-2;Q13404-1;E5RIF1;D6RG00;A0M8W4;H0YBX6;Q13404-8;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 yes no 0 0 1 0 By matching By MS/MS 1 1 63.749 63.874 2 0.035527 27854 20181213_JW_Orientia_Karp_1_2 57.788 37.054 11551000 5407800 6143400 0 0 0 0 0 0 3476 952 3056 21001;21002 13769 13769 1 GVGGSQPPDIDK Unmodified 1168.5724 0.57241646 234 A0A024RC61;Q59E93;P15144 ANPEP Aminopeptidase N yes no 0 0 0 0 By MS/MS By matching 1 1 33.207 33.333 2 0.0038759 10035 20181213_JW_Orientia_Karp_1_1 112.85 54.616 7699100 6698300 0 0 0 1000800 0 0 0 3477 234 3057 21003;21004 13770 13770 1 GVGIISEGNETVEDIAAR Unmodified 1828.9167 0.91667089 719 B7Z3V1;P05023-3;P05023-4;P05023;B7Z1N5;B3KNQ8;B3KX35;B3KV59;H0Y7C1;B4DIQ8;B7Z1Q9;B3KW93;B3KRI1;M0R116;B7Z3F8;B1AKY9;Q53ES0;B2RAQ4;B7Z9V4;P13637;P50993;P13637-2;P13637-3 ATP1A1;ATP1A2;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 57.574 57.824 2 0.0005458 23940 20181213_JW_Orientia_Karp_1_2 122.1 80.065 32179000 14897000 6053100 10596000 632860 0 0 0 0 3478 719 3058 21005;21006;21007;21008 13771;13772;13773 13772 3 GVIDLVK Unmodified 742.45889 0.45889025 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 49.029 49.204 2 0.02652 18657 20181213_JW_Orientia_Karp_1_1 94.006 17.16 48800000 20346000 15904000 8870500 0 3679100 0 0 0 3479 1094 3059 21009;21010;21011;21012 13774;13775 13774 2 GVIKVGDEVEIVGLR Unmodified 1581.909 0.90900673 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 55.699 55.912 3 0.033639 20920 20181213_JW_Orientia_Karp_2_3 75.483 34.716 13936000 2858300 5240300 0 0 2677400 3160100 0 0 3480 1176;1244 3060 21013;21014;21015;21016 13776 13776 1 GVLAFETK Unmodified 863.47527 0.4752686 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.096 45.271 2 0.011571 16234 20181213_JW_Orientia_Karp_1_1 101.28 46.498 409860000 277580000 132280000 0 0 0 0 0 0 3481 1395 3061 21017;21018;21019 13777;13778;13779 13777 3 GVLFASGQNLAR Unmodified 1231.6673 0.6673199 1639 V9HW38;P28838-2;P28838;H0Y9Q1 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.834 49.127 2 1.1879E-05 17955 20181213_JW_Orientia_Karp_1_3 192.64 100.4 162170000 42326000 0 40643000 26614000 7929900 14369000 0 30289000 3482 1639 3062 21020;21021;21022;21023;21024;21025;21026 13780;13781;13782;13783;13784;13785;13786;13787 13782 8 GVLFGVPGAFTPGCSK Unmodified 1592.8021 0.80209882 1645 V9HW35;P30044-2;P30044;P30044-3 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 65.967 66.233 2 0.03228 23168 20181213_JW_Orientia_Karp_3_1 74.76 40.87 24288000 0 0 0 0 7572200 4128200 7788500 4799600 3483 1645 3063 21027;21028;21029;21030 13788;13789 13788 2 GVLKVFLENVIR Unmodified 1385.8395 0.83947061 447 B2R4R0;P62805;Q0VAS5;Q6B823 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 1 By MS/MS 1 62.922 63.121 3 0.003469 26871 20181213_JW_Orientia_Karp_1_3 123.01 90.484 0 0 0 0 0 0 0 0 0 3484 447 3064 21031 13790 13790 1 GVLMEQGQHTEIK Oxidation (M) 1484.7293 0.72932781 2025 yes no 0 0 1 0 By MS/MS 1 70.178 70.328 2 0.018687 31853 20181213_JW_Orientia_Karp_1_2 102.07 29.219 0 0 0 0 0 0 0 0 0 + 3485 2025 3065 21032 13791 13791 1550 1 GVLMYGPPGTGK Oxidation (M) 1191.5958 0.59579444 905 E9PM69;P17980;R4GNH3;A8K781;E9PN50;E9PMD8;E9PKD5 PSMC3 26S protease regulatory subunit 6A yes no 0 0 1 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 43.627 43.959 2 0.017119 14339 20181213_JW_Orientia_Karp_3_1 85.533 41.898 11054000 4132600 4123900 0 0 384700 0 2294900 118100 3486 905 3066 21033;21034;21035;21036;21037 13792 13792 519 1 GVMLAVDAVIAELK Oxidation (M) 1443.8007 0.80070184 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z4F6;Q53SE2;E7ESH4;E7EXB4 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 72.463 72.525 2 0.00050199 26618 20181213_JW_Orientia_Karp_3_1 143.97 83.456 30741000 5407200 9897400 0 0 6154400 0 9281800 0 3487 81 3067 21038;21039;21040;21041;21042 13793;13794;13795;13796 13796 91 4 GVNIGGAGSYIYEK Unmodified 1426.7092 0.70924429 975 H0YFA4;Q53FN1;P52943;P52943-2 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.828 49.173 2 3.2186E-25 17997 20181213_JW_Orientia_Karp_1_3 232.17 141.34 491590000 50208000 99237000 60915000 112390000 60479000 68375000 1626400 38360000 3488 975 3068 21043;21044;21045;21046;21047;21048;21049;21050 13797;13798;13799;13800;13801;13802;13803;13804;13805;13806 13800 10 GVNLPGAAVDLPAVSEK Unmodified 1635.8832 0.88318591 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;A0A024R609;H3BQ34;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 61.394 61.689 2 2.4186E-23 26726 20181213_JW_Orientia_Karp_1_1 219.95 185.45 606190000 207520000 135600000 72428000 21219000 84406000 48625000 14309000 22078000 3489 1597 3069 21051;21052;21053;21054;21055;21056;21057;21058;21059 13807;13808;13809;13810;13811;13812;13813;13814;13815 13807 9 GVNPDEVVALGAAIQAGVLQGDVK Unmodified 2319.2434 0.24342475 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 74.51 74.542 3 9.1596E-08 30414 20181213_JW_Orientia_Karp_2_1 141.29 120.67 3186600000 1561600000 678380000 344080000 20683000 158200000 130770000 240070000 52839000 3490 1074 3070 21060;21061;21062;21063;21064;21065;21066;21067 13816;13817;13818;13819;13820;13821;13822;13823;13824 13820 9 GVNTGAVGSYIYDR Unmodified 1470.7103 0.71030693 975 H0YFA4;Q53FN1;P52943;P52943-2;H0YHD8 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.277 48.623 2 9.6368E-46 16638 20181213_JW_Orientia_Karp_2_2 258.78 178.33 274420000 33308000 36542000 28410000 80916000 34348000 36735000 1578400 22585000 3491 975 3071 21068;21069;21070;21071;21072;21073;21074;21075 13825;13826;13827;13828;13829;13830;13831;13832 13829 8 GVNVVYDCLGR Unmodified 1250.6078 0.60775611 1129 Karp_00368 yes yes 0 0 0 0 By MS/MS 1 48.867 49.477 2 0.03152 16366 20181213_JW_Orientia_Karp_3_2 78.653 46.435 8810100 0 0 0 0 0 0 0 8810100 3492 1129 3072 21076 13833 13833 1 GVPESLASGEGAGAGLPALDLAK Unmodified 2079.0848 0.084798847 1536 V9HW53;O95865;Q5SSV3;Q5SRR8 HEL-S-277;DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 66.811 66.947 2;3 6.0837E-28 29537 20181213_JW_Orientia_Karp_1_2 254.68 206.22 145910000 37574000 25916000 43043000 8431500 16778000 14167000 0 0 3493 1536 3073 21077;21078;21079;21080;21081;21082;21083 13834;13835;13836;13837;13838;13839;13840 13835 7 GVPQIEVTFDIDANGILNVSAVDK Unmodified 2513.3013 0.30133356 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96BE0;Q96H53;E9PS65;E9PM13 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 75.056 75.062 2;3 1.4676E-14 34919 20181213_JW_Orientia_Karp_1_1 174.72 131.16 340490000 257500000 57535000 23179000 0 0 2273900 0 0 3494 1586 3074 21084;21085;21086;21087;21088;21089;21090 13841;13842;13843;13844;13845;13846 13843 6 GVPQIEVTFDIDANGILNVTATDK Unmodified 2529.2962 0.29624819 369 A8K5I0;P08107-2;P08107;B4DFN9;B4DNT8;Q59EJ3;B4E388;B4DI39;B4DWK5;B4E1T6;B4DNX1;B4DVU9;B4E1S9;V9GZ37;B3KTT5 HEL-S-103;HSPA1A Heat shock 70 kDa protein 1A no no 0 0 0 0 By MS/MS By matching 1 1 74.872 74.897 2 1.5265E-14 34869 20181213_JW_Orientia_Karp_1_1 223.86 180.32 26869000 22394000 4475600 0 0 0 0 0 0 3495 369 3075 21091;21092 13847 13847 1 GVQDSIADAEQR Unmodified 1287.6055 0.6055075 814 CON__Q3TTY5 yes yes 0 0 0 0 By MS/MS 1 37.963 37.963 2 2.1859E-05 12330 20181213_JW_Orientia_Karp_1_1 174.42 99.312 12811000 12811000 0 0 0 0 0 0 0 + 3496 814 3076 21093 13848 13848 1 GVQGIIVVNTEGIPIK Unmodified 1635.956 0.95595693 436 B1AKR6;Q9NP97;B4DFR2 DYNLRB1 Dynein light chain roadblock-type 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 64.377 64.554 2 7.8064E-28 25105 20181213_JW_Orientia_Karp_2_2 232.78 175.24 93025000 27340000 14625000 17063000 0 17928000 11871000 0 4198100 3497 436 3077 21094;21095;21096;21097;21098;21099 13849;13850;13851;13852;13853;13854 13852 6 GVQTLLDAVVDYLPSPNDVNSIK Unmodified 2456.2799 0.27986984 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 1 76.364 76.357 2;3 7.0854E-09 35521 20181213_JW_Orientia_Karp_1_3 166.6 130.84 174120000 25109000 42918000 42361000 7320000 16711000 10182000 29289000 229140 3498 1094 3078 21100;21101;21102;21103;21104;21105;21106;21107;21108;21109;21110;21111;21112;21113;21114 13855;13856;13857;13858;13859;13860;13861 13859 5 GVQTLLDAVVDYLPSPNDVNSIK Deamidation (NQ) 2457.2639 0.26388542 1094 Karp_00243 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 76.842 76.834 2 2.0586E-20 36154 20181213_JW_Orientia_Karp_1_1 191.41 139.47 49563000 12083000 13149000 0 3869900 4695400 3595100 12170000 0 3499 1094 3078 21115;21116;21117;21118;21119;21120 13862;13863;13864;13865;13866;13867 13862 445;446 6 GVQYLNEIK Unmodified 1062.571 0.5709599 1593 P13639;Q8TA90;B4DPU3;Q6W6M8 EEF2 Elongation factor 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 43.796 44.126 2 0.0021337 15209 20181213_JW_Orientia_Karp_1_2 117.89 57.453 80323000 20537000 27110000 20919000 3967400 0 0 7790700 0 3500 1593 3079 21121;21122;21123;21124;21125 13868;13869;13870;13871 13869 4 GVSAFSTWEK Unmodified 1110.5346 0.53457439 1493 O14776-2;O14776;G3V220;Q5VWI1 TCERG1;TCERG1L Transcription elongation regulator 1;Transcription elongation regulator 1-like protein yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 47.15 47.472 2 0.022192 16133 20181213_JW_Orientia_Karp_2_1 82.749 35.147 21992000 6357400 7937000 4116400 2472200 0 0 0 1108800 3501 1493 3080 21126;21127;21128;21129;21130 13872;13873 13873 2 GVSGSCNIDVVCPEGDGR Unmodified 1876.8044 0.80436002 801 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 5 5 4 3 3 5 46.504 46.828 2;3 7.6773E-42 15309 20181213_JW_Orientia_Karp_2_2 294.26 230.03 30999000000 10875000000 6249400000 6815300000 1818000000 1362000000 2186100000 23446000 1669700000 + 3502 801 3081 21131;21132;21133;21134;21135;21136;21137;21138;21139;21140;21141;21142;21143;21144;21145;21146;21147;21148;21149;21150;21151;21152;21153;21154;21155;21156;21157;21158;21159;21160;21161;21162;21163;21164 13874;13875;13876;13877;13878;13879;13880;13881;13882;13883;13884;13885;13886;13887;13888;13889;13890;13891;13892;13893;13894;13895;13896;13897 13888 23 GVSGSCNIDVVCPEGDGR Deamidation (NQ) 1877.7884 0.7883756 801 CON__P15636 yes yes 0 1 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 48.984 49.361 2 0.00023778 15968 20181213_JW_Orientia_Karp_3_2 137.73 81.746 112130000 31149000 63046000 0 10878000 0 0 0 7057800 + 3503 801 3081 21165;21166;21167;21168 13898;13899 13899 288 2 GVSGSCNIDVVCPEGDGRR Unmodified 2032.9055 0.90547105 801 CON__P15636 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 7 5 5 3 5 3 1 39.772 40.08 2;3 0.00012519 12566 20181213_JW_Orientia_Karp_2_2 125.61 101.5 33136000000 12100000000 7663500000 7407600000 2024500000 121660000 1088100000 2690400000 40040000 + 3504 801 3082 21169;21170;21171;21172;21173;21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187;21188;21189;21190;21191;21192;21193;21194;21195;21196;21197;21198;21199;21200;21201 13900;13901;13902;13903;13904;13905;13906;13907;13908;13909;13910;13911;13912 13907 11 GVSGSCNIDVVCPEGDGRR Deamidation (NQ) 2033.8895 0.88948663 801 CON__P15636 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 41.71 41.952 2;3 0.010613 14425 20181213_JW_Orientia_Karp_1_2 115.83 77.648 273490000 66734000 77379000 57362000 70039000 1978600 0 0 0 + 3505 801 3082 21202;21203;21204;21205;21206;21207;21208 13913;13914;13915 13914 288 3 GVSLTNHHFYDESK Unmodified 1632.7532 0.75323437 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314;K7EPW7;K7EKX1;K7EJ70;K7EIP3 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By matching By MS/MS 1 1 32.722 33.173 3 0.010563 9210 20181213_JW_Orientia_Karp_3_1 113.99 73.51 13344000 0 0 0 0 0 4662400 8681200 0 3506 588 3083 21209;21210 13916 13916 1 GVTFDTGGISLKPSAGMEDMK 2 Oxidation (M) 2172.0079 0.0078704339 1349 Karp_01525 yes yes 0 0 2 1 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 50.189 50.377 3 0.0088874 17627 20181213_JW_Orientia_Karp_2_2 82.709 57.655 196260000 85899000 2900800 0 0 44798000 62657000 0 0 3507 1349 3084 21211;21212;21213;21214 13917;13918;13919 13918 922;923 3 GVTFDTGGISLKPSAGMEDMK Oxidation (M) 2156.013 0.012955812 1349 Karp_01525 yes yes 0 0 1 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 52.176 52.484 3 0.013013 20503 20181213_JW_Orientia_Karp_1_2 88.637 63.47 181470000 50072000 28250000 48132000 17237000 17376000 19995000 411640 0 3508 1349 3084 21215;21216;21217;21218;21219;21220;21221 13920;13921 13920 922;923 2 GVTIASGGVLPNIHPELLAK Unmodified 1985.131 0.13096118 1518 O75367-2;O75367-3;O75367;D6RCF2 H2AFY Core histone macro-H2A.1;Histone H2A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 62.244 62.513 2;3 0.00035416 27188 20181213_JW_Orientia_Karp_1_1 110.12 90.825 297510000 113100000 49069000 88313000 1440100 17820000 13016000 0 14755000 3509 1518 3085 21222;21223;21224;21225;21226;21227;21228;21229;21230;21231;21232 13922;13923;13924;13925;13926;13927;13928;13929;13930 13922 9 GVVDFYSNDK Unmodified 1142.5244 0.52440364 1276 Karp_01108 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 46.693 46.908 2 0.010964 15893 20181213_JW_Orientia_Karp_2_1 91.584 51.232 31611000 16440000 0 10490000 4680600 0 0 0 0 3510 1276 3086 21233;21234;21235 13931 13931 1 GVVDSDDLPLNVSR Unmodified 1484.7471 0.74708636 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71;B4DHT9 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 56.99 57.173 2 1.175E-34 23235 20181213_JW_Orientia_Karp_1_3 246.56 191.84 399370000 139830000 151540000 108000000 0 0 0 0 0 3511 1598 3087 21236;21237;21238 13932;13933;13934 13934 3 GVVDSEDLPLNISR Unmodified 1512.7784 0.77838649 1251;1057;251 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q96HX7;Q86U12;B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Karp_00928 EL52;HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 60.578 60.881 2 8.3398E-73 23316 20181213_JW_Orientia_Karp_2_1 290.28 0 2852600000 692120000 654880000 613560000 227020000 250080000 213980000 142580000 58419000 3512 1057;251;1251 3088 21239;21240;21241;21242;21243;21244;21245;21246;21247;21248;21249;21250;21251;21252;21253 13935;13936;13937;13938;13939;13940;13941;13942;13943;13944;13945;13946 13940 12 GVVEVTHDLQK Unmodified 1223.651 0.65100113 115 A0A024R5K8;P50454;B4DN87;A8K259;E9PKH2 SERPINH1 Serpin H1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 34.538 34.872 2 0.00022614 10732 20181213_JW_Orientia_Karp_1_1 154.01 97.577 66328000 20602000 16766000 20553000 3085200 2210100 0 3111700 0 3513 115 3089 21254;21255;21256;21257;21258;21259 13947;13948;13949 13947 3 GVVFSVTTVDLK Unmodified 1263.7075 0.70745338 1863 Q6FIC5;Q9Y696;B4DWC4;Q9NVF8;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 61.277 61.46 2 0.00085306 26682 20181213_JW_Orientia_Karp_1_1 152.54 72.308 35704000 15098000 10796000 9810800 0 0 0 0 0 3514 1863 3090 21260;21261;21262 13950;13951;13952 13950 3 GVVPLAGTNGETTTQGLDGLSER Deamidation (NQ) 2272.1183 0.11828382 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 1 0 0 By MS/MS 1 63.05 63.56 2 0.037413 23965 20181213_JW_Orientia_Karp_3_2 65.225 7.0668 525440 0 0 0 0 0 0 0 525440 3515 1546 3091 21263 13953 13953 1 GVVQELQQAISK Unmodified 1298.7194 0.71941505 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PK01;Q71RH4;Q9H7G6;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PL71;E9PN91;E9PIZ1;H0YCK7 EEF1D Elongation factor 1-delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 57.19 57.535 2 1.1691E-16 21526 20181213_JW_Orientia_Karp_2_2 218.55 142.38 647050000 122440000 204810000 88250000 29842000 110530000 52861000 849160 37474000 3516 1641 3092 21264;21265;21266;21267;21268;21269;21270;21271 13954;13955;13956;13957;13958;13959;13960;13961;13962 13959 9 GVVVVIK Unmodified 712.48471 0.48471107 981 H0YKD8;P46779;P46779-2;P46779-3;H0YMF4;P46779-4;P46779-5;Q59F34 RPL28 60S ribosomal protein L28 yes no 0 0 0 0 By MS/MS 1 41.151 41.35 2 0.027854 13497 20181213_JW_Orientia_Karp_1_3 92.279 24.902 2265900 0 0 2265900 0 0 0 0 0 3517 981 3093 21272 13963 13963 1 GVYDTQGVK Unmodified 965.48181 0.48181054 1092 Karp_00241 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 29.356 29.776 2 0.0010372 7376 20181213_JW_Orientia_Karp_3_1 131.22 59.508 272260000 0 108090000 104960000 26066000 10007000 0 23140000 0 3518 1092 3094 21273;21274;21275;21276;21277;21278;21279 13964;13965;13966;13967;13968;13969 13968 6 GWDLTVK Unmodified 817.4334 0.43340378 1558 P05161 ISG15 Ubiquitin-like protein ISG15 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 48.345 48.52 2 0.010725 17525 20181213_JW_Orientia_Karp_1_3 143 38.795 51957000 5571500 33957000 11933000 0 495460 0 0 0 3519 1558 3095 21280;21281;21282;21283 13970;13971;13972;13973 13972 4 GWEEGVAQMSVGQR Oxidation (M) 1548.6991 0.69909031 1740 Q5W0X3;Q0VDC6;P62942;Q1JUQ5 FKBP1A;FKBP12-Exip2 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP1A yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.546 42.876 2 3.0854E-25 13273 20181213_JW_Orientia_Karp_3_2 230.81 151.74 902560000 180290000 148170000 170410000 62578000 170020000 0 148010000 23090000 3520 1740 3096 21284;21285;21286;21287;21288;21289;21290 13974;13975;13976;13977;13978;13979;13980 13980 1362 7 GWEEGVAQMSVGQR Unmodified 1532.7042 0.70417569 1740 Q5W0X3;Q0VDC6;P62942;Q1JUQ5 FKBP1A;FKBP12-Exip2 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP1A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 51.44 51.745 2;3 1.794E-88 19817 20181213_JW_Orientia_Karp_1_3 312.95 221.69 981870000 184220000 143560000 291880000 119430000 111350000 68976000 50210000 12246000 3521 1740 3096 21291;21292;21293;21294;21295;21296;21297;21298;21299;21300;21301;21302;21303;21304 13981;13982;13983;13984;13985;13986;13987;13988 13983 8 GWSDLQPAMGGEAERFQAQLEVK Acetyl (Protein N-term);2 Deamidation (NQ) 2590.201 0.20096759 1483 M0QZD8;Q6ZTK2 Putative uncharacterized protein LOC400499 yes no 1 2 0 1 By MS/MS 1 87.933 87.933 2 0.041537 39384 20181213_JW_Orientia_Karp_1_1 53.491 23.007 2024100 2024100 0 0 0 0 0 0 0 3522 1483 3097 21305 13989 13989 1900;1901;1902 1 GWSDLQPAMGGEAERFQAQLEVK Acetyl (Protein N-term);3 Deamidation (NQ) 2591.185 0.18498318 1483 M0QZD8;Q6ZTK2 Putative uncharacterized protein LOC400499 yes no 1 3 0 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 84.113 83.979 2 0.0029687 30137 20181213_JW_Orientia_Karp_3_1 75.998 23.177 588070000 0 0 5058600 0 0 2807500 580210000 0 3523 1483 3097 21306;21307;21308;21309 13990;13991;13992;13993;13994;13995 13992 1900;1901;1902 6 GWYGAWESFK Unmodified 1229.5506 0.55055881 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.285 60.535 2 0.00089576 26052 20181213_JW_Orientia_Karp_1_1 126.41 46.173 63840000 25912000 14253000 11672000 2536900 4161300 5305000 0 0 3524 1428 3098 21310;21311;21312;21313;21314;21315 13996;13997;13998;13999;14000;14001 13996 6 GYADIVQLLLAK Unmodified 1302.7547 0.75473792 373 A8K646;Q92882 OSTF1 Osteoclast-stimulating factor 1 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 75.191 75.209 2 0.010991 28081 20181213_JW_Orientia_Karp_3_1 96.171 62.305 31412000 0 6154200 6830200 0 6235900 4553200 7325600 312940 3525 373 3099 21316;21317;21318;21319;21320;21321 14002 14002 1 GYAFIEFASFEDAK Unmodified 1593.7351 0.73512469 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338;H7BY16;Q9BQ02 NCL Nucleolin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 71.141 71.271 2 0.00046919 28603 20181213_JW_Orientia_Karp_2_2 167.18 121.58 54421000 0 6455300 0 8322800 13927000 9005400 16710000 0 3526 88 3100 21322;21323;21324;21325;21326;21327 14003;14004;14005;14006;14007;14008;14009 14007 7 GYAFNHSADFETVR Unmodified 1612.727 0.72701962 1721 P61160;F5H6T1;B4DWQ5;Q8IY98;B4DHK9;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 42.77 43.07 3 0.0081028 14430 20181213_JW_Orientia_Karp_1_3 84.173 59.453 49000000 18651000 16237000 8566300 0 0 0 5545200 0 3527 1721 3101 21328;21329;21330;21331 14010;14011 14011 2 GYDVIAQAQSGTGK Unmodified 1393.6838 0.68375782 387 A8K7F6;P60842;J3KT12;A8K088;P60842-2;J3QLN6;J3QR64;J3KTB5;J3QL43;J3QS69;E7EQG2;Q59F68;Q14240;Q14240-2;J3QKZ9;B4E047;J3KS25;J3KT04;J3KS93;E7EMV8;Q86WD0;J3KSN7;B4E102 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 41.682 42.024 2 1.4818E-17 14409 20181213_JW_Orientia_Karp_1_1 216.83 146.01 111680000 27192000 47308000 27054000 0 0 0 8749000 1375700 3528 387 3102 21332;21333;21334;21335;21336 14012;14013;14014;14015 14012 4 GYEEWLLNEIR Unmodified 1420.6987 0.69867961 1509;133 O43707;O43707-2;Q96BG6;B4E337;B7Z2N5;B7Z4P6;Q59FD9;B7Z4K1;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;Q86TX4;P35609-2;P35609 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 70.053 70.174 2 2.6548E-13 25221 20181213_JW_Orientia_Karp_3_1 222.28 118.08 261090000 57843000 32877000 89366000 8798100 11243000 13677000 47290000 0 3529 1509;133 3103 21337;21338;21339;21340;21341;21342;21343 14016;14017;14018;14019 14019 4 GYELLFQPEVVR Unmodified 1448.7664 0.76636524 781 Q96FS1;Q68DU0;C9JZR2;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;O60716-7;O60716-5;O60716-3;O60716-6;O60716-4;O60716-2;O60716;Q7KZJ3;A0A024R4Z0;A0A024R4Y7;O60716-32;O60716-31;O60716-29;O60716-27;O60716-30;O60716-28;O60716-26;O60716-25 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 66.358 66.508 2 0.037292 29658 20181213_JW_Orientia_Karp_1_1 75.229 26.169 22329000 10604000 0 9755500 0 0 1050900 918630 0 3530 781 3104 21344;21345;21346;21347 14020 14020 1 GYFDEEMNR Oxidation (M) 1175.4553 0.45533779 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;A0A075B730;P58107 PLEC;PLEC1;EPPK1 Plectin;Epiplakin yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 1 1 37.586 37.92 2 0.0041856 12230 20181213_JW_Orientia_Karp_1_1 104.06 72.983 14959000 6911300 6453800 0 0 0 0 1594200 0 3531 1803 3105 21348;21349;21350 14021;14022 14021 1445 2 GYFEYIEENK Unmodified 1290.5768 0.57683314 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q5RI18 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 52.057 52.402 2 1.485E-09 20722 20181213_JW_Orientia_Karp_1_1 209.58 159.87 269200000 67566000 57990000 88961000 21149000 13114000 16728000 1377800 2317300 3532 595 3106 21351;21352;21353;21354;21355;21356;21357;21358 14023;14024;14025;14026 14023 3 GYFFLDER Unmodified 1045.4869 0.48689592 1692 P50479 PDLIM4 PDZ and LIM domain protein 4 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 60.095 60.337 2 0.004854 23314 20181213_JW_Orientia_Karp_2_3 124.83 49.622 15071000 4235000 0 5153400 0 2810800 2494800 0 376980 3533 1692 3107 21359;21360;21361;21362;21363 14027;14028;14029 14029 3 GYFVQPTVFSNVTDEMR Unmodified 1988.9302 0.93021246 1538 V9HW83;V9HVX6;P00352;B4DXX3;B4DDF8 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 68.277 68.504 2 0.00021746 30916 20181213_JW_Orientia_Karp_1_1 135.91 73.573 46761000 10493000 5208900 18061000 0 3603700 0 5318900 4076700 3534 1538 3108 21364;21365;21366;21367;21368;21369 14030;14031;14032;14033;14034;14035 14030 6 GYFVQPTVFSNVTDEMR Oxidation (M) 2004.9251 0.92512708 1538 V9HW83;V9HVX6;P00352;B4DXX3;B4DDF8 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 63.504 63.719 2 8.9789E-09 27346 20181213_JW_Orientia_Karp_1_3 171.08 125.43 44958000 19433000 0 16195000 0 0 3031900 0 6298300 3535 1538 3108 21370;21371;21372;21373;21374 14036;14037;14038;14039 14036 1145 4 GYGFGLIK Unmodified 853.46979 0.46978929 1616 P21796;B3KTS5;B4DEI3;C9JI87 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 52.824 53.061 2 0.014869 20669 20181213_JW_Orientia_Karp_1_3 95.957 32.81 95648000 0 69313000 8783000 0 5247300 12305000 0 0 3536 1616 3109 21375;21376;21377;21378 14040;14041;14042;14043 14041 4 GYGFIQPSEK Unmodified 1124.5502 0.55022446 1096 Karp_00250 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.656 43.983 2 0.00056131 14918 20181213_JW_Orientia_Karp_1_3 133.13 71.355 518730000 120490000 171740000 112250000 0 0 40390000 73084000 783240 3537 1096 3110 21379;21380;21381;21382;21383;21384;21385 14044;14045;14046;14047;14048;14049;14050;14051;14052 14048 9 GYGFVDFDSPAAAQK Unmodified 1571.7256 0.72562264 606 D3DPB2;E7ETU5;B4DN88;P29558-2;P29558;E7EPF2;C9J9B2;C9JIJ9;B4E2S3;Q6XE24-3;Q6XE24-4;Q6XE24-5;Q6XE24-2;Q6XE24 RBMS1;RBMS3 RNA-binding motif, single-stranded-interacting protein 1;RNA-binding motif, single-stranded-interacting protein 3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 57.917 58.227 2 1.624E-08 24733 20181213_JW_Orientia_Karp_1_1 180.66 147.6 44835000 18371000 8765600 10459000 2819400 0 3073500 0 1345900 3538 606 3111 21386;21387;21388;21389;21390;21391 14053;14054 14053 2 GYGFVHFETQEAAER Unmodified 1739.7903 0.79034816 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E7ERJ7;B4DQX0;H0YAR2;E5RGH3;H0YBN4 PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 46.141 46.403 3 0.013757 16211 20181213_JW_Orientia_Karp_1_3 64.842 36.981 33360000 11959000 10522000 6508900 0 0 3058300 0 1312400 3539 179 3112 21392;21393;21394;21395;21396 14055 14055 1 GYGYGQGAGTLSTDK Unmodified 1473.6736 0.67358707 662 Q9BTA4;B4DY28;Q6ZMS3;P21291;B4E2T4;E9PS42;E9PND2;Q59EQ5;E9PP21;Q6AI18 CSRP1;DKFZp686M148 Cysteine and glycine-rich protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 37.638 37.954 2 7.1747E-10 11676 20181213_JW_Orientia_Karp_1_3 187.62 128.27 240340000 60163000 30943000 52639000 0 49164000 21910000 22390000 3125600 3540 662 3113 21397;21398;21399;21400;21401;21402;21403;21404;21405 14056;14057;14058;14059;14060;14061;14062 14058 7 GYHQYAYNGK Deamidation (NQ) 1200.52 0.51998696 862 E3SWF7 HLA-A yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 23.518 23.97 3 0.0042285 4899 20181213_JW_Orientia_Karp_2_1 106.6 6.9116 8805600 0 0 0 2857700 2109500 797370 1796200 1244800 3541 862 3114 21406;21407;21408;21409;21410 14063;14064 14063 309 2 GYHVDAINDQAQQGNFSPLAK Unmodified 2272.0873 0.087258463 1103 Karp_00280 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 48.597 48.898 3 0.00588 17964 20181213_JW_Orientia_Karp_1_2 76.573 28.018 86364000 19413000 22573000 17802000 8056200 6188100 6600700 0 5730500 3542 1103 3115 21411;21412;21413;21414;21415;21416;21417 14065;14066;14067 14065 3 GYILSLLK Unmodified 905.5586 0.5586043 1323 Karp_01308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 61.349 61.559 2 0.0042423 26778 20181213_JW_Orientia_Karp_1_1 134.06 70.909 18255000 5023200 3694200 4344700 0 1744600 3448500 0 0 3543 1323 3116 21418;21419;21420;21421;21422 14068;14069;14070;14071;14072 14068 5 GYISPYFINTSK Unmodified 1388.6976 0.69761697 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;Q53SE2;E7ESH4;B7Z532;B9VPB4;B9VP19 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 2 2 1 1 55.975 56.306 2 0.0053373 22677 20181213_JW_Orientia_Karp_1_3 89.403 55.443 218560000 48497000 35245000 76119000 10622000 9432400 24045000 14500000 99081 3544 81 3117 21423;21424;21425;21426;21427;21428;21429;21430;21431;21432;21433 14073;14074;14075;14076;14077;14078 14075 6 GYISQYFATNR Unmodified 1318.6306 0.63060004 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.288 50.595 2 7.0996E-73 19563 20181213_JW_Orientia_Karp_1_1 338.72 258.28 6196100000 1510500000 1376400000 1264900000 797680000 424120000 749240000 73232000 0 3545 1296 3118 21434;21435;21436;21437;21438;21439;21440;21441 14079;14080;14081;14082;14083;14084;14085;14086 14079 8 GYISQYFATNR Deamidation (NQ) 1319.6146 0.61461563 1296 Karp_01187 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 53.047 53.306 2 3.4389E-13 21646 20181213_JW_Orientia_Karp_1_2 223.31 143.15 294140000 100180000 54878000 70682000 22220000 27651000 18531000 0 0 3546 1296 3118 21442;21443;21444;21445;21446;21447;21448;21449;21450;21451;21452;21453 14087;14088;14089;14090;14091;14092;14093;14094;14095 14088 711 9 GYKHTLNQIDSVK Unmodified 1501.7889 0.7888916 797 CON__P12763 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 2 2 1 1 1 27.516 27.84 3 1.0061E-08 6886 20181213_JW_Orientia_Karp_1_2 194.98 125.11 97128000 18228000 10598000 12348000 13846000 11385000 4185400 17054000 9482200 + 3547 797 3119 21454;21455;21456;21457;21458;21459;21460;21461;21462;21463;21464 14096;14097;14098;14099;14100;14101 14097 6 GYKPSEEEEYMSPNQLEYFK Oxidation (M) 2483.0839 0.083872149 1451 Karp_02532 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.548 48.894 3 0.00016254 18320 20181213_JW_Orientia_Karp_1_1 131.31 78.988 795440000 182060000 182050000 139780000 94197000 74449000 63971000 258330 58671000 3548 1451 3120 21465;21466;21467;21468;21469;21470;21471;21472 14102;14103;14104;14105;14106;14107;14108 14102 1059 7 GYKPSEEEEYMSPNQLEYFK Oxidation (M);Deamidation (NQ) 2484.0679 0.067887733 1451 Karp_02532 yes yes 0 1 1 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.533 49.86 3 0.00058575 18580 20181213_JW_Orientia_Karp_1_2 127.59 92.197 77736000 28086000 16116000 16617000 7387200 0 5865900 0 3663700 3549 1451 3120 21473;21474;21475;21476;21477;21478 14109;14110 14110 979 1059 2 GYKPSEEEEYMSPNQLEYFK Unmodified 2467.089 0.088957526 1451 Karp_02532 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 53.889 54.247 3 0.0019508 21294 20181213_JW_Orientia_Karp_1_3 102.98 72.735 482210000 180120000 52393000 127710000 33085000 42967000 27224000 1091100 17617000 3550 1451 3120 21479;21480;21481;21482;21483;21484;21485;21486 14111;14112;14113;14114;14115;14116;14117;14118;14119 14114 9 GYLAVAVVK Unmodified 918.55385 0.55385327 808 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 48.41 48.71 2 0.00080249 16939 20181213_JW_Orientia_Karp_2_3 139.92 98.264 33013000 0 5724900 3572100 11857000 3436700 8422100 0 0 + 3551 808 3121 21487;21488;21489;21490;21491 14120;14121 14121 2 GYLDLIK Unmodified 820.46945 0.46945494 1372 Karp_02002 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 56.863 57.23 2 0.011563 21535 20181213_JW_Orientia_Karp_2_1 119.57 25.973 247060000 49955000 25853000 43888000 16723000 13090000 44983000 24178000 28386000 3552 1372 3122 21492;21493;21494;21495;21496;21497;21498;21499;21500;21501 14122;14123;14124;14125;14126;14127 14124 6 GYLYIAQPPLYK Unmodified 1424.7704 0.77038799 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 60.687 61.021 2 0.00075295 25629 20181213_JW_Orientia_Karp_1_3 141.52 94.526 28954000 0 0 17301000 0 0 10375000 1277400 0 3553 1262 3123 21502;21503;21504 14128;14129 14128 2 GYNILTGGTDNHMLLVDLR Unmodified 2101.0626 0.062623617 1140 Karp_00452 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 66.103 66.24 3 0.0024475 29143 20181213_JW_Orientia_Karp_1_2 95.073 61.449 38158000 0 16935000 10724000 0 7162300 3337000 0 0 3554 1140 3124 21505;21506;21507;21508 14130;14131;14132;14133 14130 4 GYNQYAYDGK Deamidation (NQ) 1178.488 0.48801813 857 D9IDV1;I3QHQ2;I3QHQ1;E2D5M4 HLA-A no no 0 1 0 0 By matching By matching By MS/MS 1 1 1 35.899 36.082 2 0.0067554 10813 20181213_JW_Orientia_Karp_1_3 106.88 7.0924 18180000 5717600 7249900 5212100 0 0 0 0 0 3555 857 3125 21509;21510;21511 14134;14135 14135 308 2 GYPTLLLFR Unmodified 1078.6175 0.61751616 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.481 67.657 2 6.5718E-05 29784 20181213_JW_Orientia_Karp_1_3 191.63 137.42 210410000 63157000 22158000 55731000 0 29777000 15431000 0 24156000 3556 25 3126 21512;21513;21514;21515;21516;21517 14136;14137;14138;14139;14140;14141 14138 6 GYPTLLWFR Unmodified 1151.6128 0.61276513 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.33 70.447 2 0.00034813 31612 20181213_JW_Orientia_Karp_1_3 161.9 98.333 184890000 62075000 14553000 38215000 0 18779000 6140900 45124000 0 3557 25 3127 21518;21519;21520;21521;21522;21523 14142;14143;14144;14145;14146;14147 14144 6 GYSFTTTAER Unmodified 1131.5197 0.51965261 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.646 37.968 2 1.6397E-07 10743 20181213_JW_Orientia_Karp_2_2 213.85 156.8 4117500000 836890000 1346500000 1206600000 156830000 305920000 47527000 217310000 0 3558 1717;1743 3128 21524;21525;21526;21527;21528;21529;21530 14148;14149;14150;14151;14152;14153;14154;14155 14152 8 GYTVFTGVGER Unmodified 1184.5826 0.58258722 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 48.347 48.607 2 0.0056552 18283 20181213_JW_Orientia_Karp_1_1 103.31 52.608 160440000 47081000 56057000 31239000 0 6078100 7921600 0 12062000 3559 1341 3129 21531;21532;21533;21534;21535;21536 14156 14156 1 GYVLFETGYGPSGLPHIGTFSEVAR Unmodified 2653.3177 0.31765233 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 69.574 69.717 3 1.9143E-08 31691 20181213_JW_Orientia_Karp_1_1 143.23 119.58 190320000 49956000 0 38624000 0 11069000 12332000 51915000 26423000 3560 1118 3130 21537;21538;21539;21540;21541;21542 14157;14158;14159;14160;14161;14162;14163;14164 14157 8 GYVLGLLDK Unmodified 976.55933 0.55933258 1085 Karp_00200 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 58.316 58.653 2 0.02152 22208 20181213_JW_Orientia_Karp_2_2 83.206 52.519 8114500 0 0 0 0 2091400 5543300 0 479870 3561 1085 3131 21543;21544;21545;21546 14165;14166;14167 14166 3 GYVLNLLK Unmodified 918.55385 0.55385327 1152;1259;1145;1447 Karp_00478;Karp_01552;Karp_00538;Karp_00993;Karp_02466 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.86 57.17 2 0.0034058 21607 20181213_JW_Orientia_Karp_2_3 154.09 84.711 95135000 25253000 0 19806000 9987800 14896000 22695000 0 2497500 3562 1145;1152;1259;1447 3132 21547;21548;21549;21550;21551;21552 14168;14169;14170;14171;14172 14172 5 GYVPTSSLYNSDSSIGVIHLDALFNPVR Unmodified 3020.5244 0.52435064 1219 Karp_00886 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 73.333 73.364 3 1.0699E-05 33877 20181213_JW_Orientia_Karp_1_2 107.85 88.19 456070000 114210000 52751000 95643000 22720000 48867000 23366000 69099000 29412000 3563 1219 3133 21553;21554;21555;21556;21557;21558;21559;21560 14173;14174;14175;14176;14177 14173 5 GYVPTSSLYNSDSSIGVIHLDALFNPVR Deamidation (NQ) 3021.5084 0.50836623 1219 Karp_00886 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 74.353 74.383 3 0.016842 34517 20181213_JW_Orientia_Karp_1_2 56.416 38.508 62572000 0 24605000 0 3665200 5931800 6065400 22304000 0 3564 1219 3133 21561;21562;21563;21564;21565 14178 14178 621 1 GYYSPYSVSGSGSTAGSR Unmodified 1781.7857 0.78565671 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;Q96IE3 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS 1 41.777 41.777 2 0.0038417 14330 20181213_JW_Orientia_Karp_1_1 117.48 82.784 0 0 0 0 0 0 0 0 0 3565 1803 3134 21566 14179 14179 1 HAADINIK Unmodified 880.47667 0.47666558 1458 Karp_02603 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 23.049 23.429 2 0.032373 3971 20181213_JW_Orientia_Karp_3_2 81.296 26.51 20393000 0 6589000 5187000 2440900 2002400 1024700 1885500 1263200 3566 1458 3135 21567;21568;21569;21570;21571;21572;21573 14180 14180 1 HAAFTESSK Unmodified 976.46141 0.46140945 1289 Karp_01161 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 14.948 15.197 2 0.0061367 2628 20181213_JW_Orientia_Karp_1_1 101.72 54.727 3101500 1324700 0 1109300 343440 0 0 324040 0 3567 1289 3136 21574;21575;21576;21577 14181;14182;14183 14181 3 HADPDFTK Unmodified 929.4243 0.42429566 823 CON__Q9TRI1 yes yes 0 0 0 0 By MS/MS 1 21.649 21.649 2 0.022476 4644 20181213_JW_Orientia_Karp_1_1 107.29 66.068 0 0 0 0 0 0 0 0 0 + 3568 823 3137 21578 14184 14184 1 HAEMVHTGLK Unmodified 1121.5652 0.56516301 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;Q01518;Q5T0R1;Q01518-2;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R9 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 21.511 21.7 3 0.0030204 4294 20181213_JW_Orientia_Karp_1_3 109.83 60.294 12628000 2904000 5593900 2427200 823400 0 879940 0 0 3569 498 3138 21579;21580;21581;21582;21583 14185;14186;14187 14186 3 HAEMVHTGLK Oxidation (M) 1137.5601 0.56007764 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;Q01518;Q5T0R1;Q01518-2;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R9 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 1 0 By matching By matching By MS/MS By matching By MS/MS 1 2 1 1 1 15.983 16.242 3 0.021564 2610 20181213_JW_Orientia_Karp_3_1 79.489 42.425 13730000 8351900 3139800 0 1826100 0 82847 329280 0 3570 498 3138 21584;21585;21586;21587;21588;21589 14188;14189 14189 321 2 HAFSGGR Unmodified 730.35107 0.35107114 138 A0A024R6K8;P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS 1 8.3248 8.5732 2 0.028418 1318 20181213_JW_Orientia_Karp_2_1 106.42 79.722 0 0 0 0 0 0 0 0 0 3571 138 3139 21590 14190 14190 1 HAHSILQFQFAEVK Unmodified 1653.8627 0.86272524 615 B4DPC0;Q05D04;Q32MZ4-4;Q32MZ4-3;Q32MZ4-2;Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 48.242 48.633 3 0.00015656 16765 20181213_JW_Orientia_Karp_2_1 147.7 107.73 33813000 0 0 0 10366000 9296000 8135500 0 6015900 3572 615 3140 21591;21592;21593;21594 14191;14192;14193 14191 3 HAINLSSMSSK Oxidation (M);Deamidation (NQ) 1190.5601 0.56013721 2044 yes no 0 1 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 2 20.362 20.748 3 0.031963 3180 20181213_JW_Orientia_Karp_3_2 65.5 11.744 31468000 3235000 2590800 2226600 1635000 754010 1213100 936480 18877000 + 3573 2044 3141 21595;21596;21597;21598;21599;21600;21601;21602;21603 14194 14194 1246 1 HALIIYDDLSK Unmodified 1286.6871 0.68705229 1628 V9HW26;P25705-2;P25705;P25705-3 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.235 48.581 2 0.0013868 17570 20181213_JW_Orientia_Karp_1_3 123.75 86.052 109780000 23684000 32447000 25008000 11944000 4327800 5800200 148510 6421300 3574 1628 3142 21604;21605;21606;21607;21608;21609;21610;21611 14195;14196;14197;14198;14199;14200 14196 6 HALLDVTPK Unmodified 992.56548 0.56548059 64 B7Z954;A0A024R233;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-7;B7Z2R3;A0A024R225;Q9UDY2-5;Q9UDY2-4;Q9UDY2-2 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 37.68 38.014 2 0.0044131 11907 20181213_JW_Orientia_Karp_1_2 107.01 64.611 22673000 5156600 5163600 9529800 654670 0 386340 1781800 0 3575 64 3143 21612;21613;21614;21615;21616;21617;21618 14201;14202;14203;14204 14202 4 HALLEADVAAHQDR Unmodified 1544.7696 0.76955314 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 32.733 33.066 3 0.010295 9330 20181213_JW_Orientia_Karp_1_3 117.27 91.355 67203000 11680000 28807000 18216000 5202600 966950 0 2329400 0 3576 316 3144 21619;21620;21621;21622;21623;21624 14205;14206 14205 1 HAMLEMNARSLQQK Oxidation (M);3 Deamidation (NQ) 1674.7705 0.7705407 998 H7BYJ3;O14578-3;O14578;O14578-4 CIT Citron Rho-interacting kinase yes no 0 3 1 1 By MS/MS 1 50.31 50.508 2 0.026621 18817 20181213_JW_Orientia_Karp_1_3 59.542 20.908 6106400 0 0 6106400 0 0 0 0 0 3577 998 3145 21625 14207 14207 365;1752;1753 554 0 HAQAAQNMSGPDAETNQKPVDPILQAFK Unmodified 3005.4665 0.46651819 1266 Karp_01074 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 50.329 50.579 4 0.00023601 19575 20181213_JW_Orientia_Karp_1_1 80.453 52.508 123690000 40501000 27285000 25992000 11048000 8760400 10106000 0 0 3578 1266 3146 21626;21627;21628;21629;21630;21631 14208;14209;14210;14211 14208 4 HAQAAQNMSGPDAETNQKPVDPILQAFK Oxidation (M) 3021.4614 0.46143281 1266 Karp_01074 yes yes 0 0 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.079 48.424 4 0.00015932 16711 20181213_JW_Orientia_Karp_2_3 91.378 66.357 195250000 46113000 30759000 37206000 28478000 11634000 16416000 840030 23799000 3579 1266 3146 21632;21633;21634;21635;21636;21637;21638;21639 14212;14213;14214;14215;14216 14215 827 5 HAQAAQNMSGPDAETNQKPVDPILQAFK Oxidation (M);Deamidation (NQ) 3022.4454 0.44544839 1266 Karp_01074 yes yes 0 1 1 1 By matching By matching By MS/MS By matching 1 1 1 1 51.045 51.298 4 0.024833 18369 20181213_JW_Orientia_Karp_2_3 43.156 24.908 25319000 11034000 0 0 0 7261400 5864700 0 1159400 3580 1266 3146 21640;21641;21642;21643 14217 14217 1827 827 1 HAQYEIR Unmodified 915.45626 0.45626449 1214 Karp_00878 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 21.652 22.027 2 0.028147 4319 20181213_JW_Orientia_Karp_3_1 91.9 48.834 3634800 0 0 3203900 0 0 0 430930 0 3581 1214 3147 21644;21645 14218;14219 14219 2 HASPILPITEFSDIPR Unmodified 1791.9519 0.95193418 222 A0A024RBE7;P42167;G5E972;H0YJH7 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 63.127 63.394 3 0.00030636 27009 20181213_JW_Orientia_Karp_1_3 130.27 98.949 11743000 0 3584900 5737400 0 2421100 0 0 0 3582 222 3148 21646;21647;21648 14220;14221 14220 2 HATALEELSEQLEQAK Unmodified 1795.8952 0.89520716 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 55.793 56.003 3 2.6527E-06 23229 20181213_JW_Orientia_Karp_1_1 217.19 157.44 79795000 23275000 28043000 19011000 0 6156300 3309400 0 0 3583 944 3149 21649;21650;21651;21652;21653 14222;14223;14224 14222 3 HAVSEGTKAVTK Unmodified 1226.6619 0.66190017 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;P57053;A8K9J7;Q99880;Q96A08;L0R4T3;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BA;ABCF2;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 15.323 15.505 3 0.0028066 2542 20181213_JW_Orientia_Karp_1_2 137.4 95.154 12455000 6330300 0 5960900 163420 0 0 0 0 3584 449;1624;1817 3150 21654;21655;21656;21657 14225;14226;14227 14226 3 HAVSEGTKAVTKYTSSK Unmodified 1792.9319 0.93192702 449;1624;1817 B2R4S9;P62807;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99879;Q99877;P58876;A8K9J7;Q99880;Q96A08;L0R4T3;P23527;P33778;Q8N257;Q16778 HIST1H2BI;HIST1H2BC;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BA;ABCF2;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-A;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E no no 0 0 0 2 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 23.039 23.461 4 0.021938 5068 20181213_JW_Orientia_Karp_1_2 77.191 53.2 12594000 0 9326300 0 789000 0 318170 904420 1255800 3585 449;1624;1817 3151 21658;21659;21660;21661;21662 14228 14228 1 HCTSHLANGQWSELWK Deamidation (NQ) 1953.8792 0.87917994 1339 Karp_01469 yes yes 0 1 0 0 By MS/MS By MS/MS 1 1 47.413 47.687 3 0.0016353 17337 20181213_JW_Orientia_Karp_1_2 122.1 96.768 11411000 0 7049200 4361600 0 0 0 0 0 3586 1339 3152 21663;21664 14229;14230 14229 782 2 HCTSSSWSR Unmodified 1106.4563 0.45634085 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 16.12 16.35 2 0.00080103 2745 20181213_JW_Orientia_Karp_1_3 140.35 100.09 7900700 4288100 1271300 1783700 274600 0 0 283010 0 3587 195 3153 21665;21666;21667;21668;21669 14231;14232;14233;14234 14233 4 HDCVMVTLSAAK Oxidation (M) 1346.6323 0.6322563 1241 Karp_00908 yes yes 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 35.108 35.291 2 0.0016724 10973 20181213_JW_Orientia_Karp_1_1 121.61 61.677 16718000 2996800 2284700 11436000 0 0 0 0 0 3588 1241 3154 21670;21671;21672 14235;14236 14235 803 2 HDFLYSIIDGAITYNR Unmodified 1896.937 0.9370124 1444 Karp_02422 yes yes 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 71.604 71.754 3 0.00018695 32812 20181213_JW_Orientia_Karp_1_2 134.88 99.228 23464000 0 8216300 0 498630 0 0 14749000 0 3589 1444 3155 21673;21674;21675 14237;14238 14237 2 HDGITVAVHK Unmodified 1075.5774 0.57744226 1508 O43504;R4GMU8;E9PLX3 LAMTOR5 Ragulator complex protein LAMTOR5 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 23.399 23.831 3 0.026285 5108 20181213_JW_Orientia_Karp_3_1 60.398 30.144 5867500 0 3596400 239140 839590 0 0 766530 425840 3590 1508 3156 21676;21677;21678;21679;21680 14239;14240 14240 2 HDINNIEQELLK Unmodified 1464.7573 0.75725712 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.242 51.512 2 7.7298E-12 19723 20181213_JW_Orientia_Karp_1_2 208.33 165.98 85271000 19649000 36260000 19852000 0 7265400 0 2244700 0 3591 1449 3157 21681;21682;21683;21684;21685 14241;14242;14243;14244;14245 14242 4 HDPSYASAYNSK Unmodified 1338.584 0.58404378 1323 Karp_01308 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 24.839 25.309 2 0.02256 5879 20181213_JW_Orientia_Karp_1_2 84.31 45.006 4136900 0 3013100 0 0 691720 0 0 432120 3592 1323 3158 21686;21687;21688 14246 14246 1 HDSNIIPHTCNIK Unmodified 1547.7515 0.75146023 1193 Karp_00798 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 30.885 31.213 3 0.019077 8641 20181213_JW_Orientia_Karp_1_2 68.171 32.967 39396000 22965000 15728000 0 0 0 189320 0 514140 3593 1193 3159 21689;21690;21691;21692 14247 14247 1 HDYIVSVSR Unmodified 1074.5458 0.54580778 1179 Karp_00654 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 34.596 34.917 2 0.0002466 10316 20181213_JW_Orientia_Karp_1_2 169.44 119.31 100390000 28657000 25366000 24324000 5701600 4966700 568650 10807000 0 3594 1179 3160 21693;21694;21695;21696;21697;21698;21699 14248;14249;14250 14249 3 HEAFESDLAAHQDR Unmodified 1624.723 0.72299688 1509;133 O43707;O43707-2;Q96BG6;B4E337;B7Z2N5;B7Z4P6;Q59FD9;B7Z4K1;Q4JCP9;Q4VAM3;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;Q86TX4;B3KUX9;B7Z2W3;H7C5W8;P35609-2;P35609;B2R8Y4;Q08043;B4DZQ2 ACTN4;ACTN3;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 30.045 30.417 3 0.010815 8607 20181213_JW_Orientia_Karp_1_1 94.781 54.204 120670000 49767000 51083000 0 8861400 4341800 0 0 6620600 3595 1509;133 3161 21700;21701;21702;21703;21704 14251 14251 1 HEAMITDLEER Oxidation (M) 1358.6136 0.61362935 47 A0A024R1N1;P35579;Q86XU5;Q99529 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS 1 1 34.419 34.518 2 0.018714 9973 20181213_JW_Orientia_Karp_1_3 83.862 43.51 11325000 6728200 0 4596500 0 0 0 0 0 3596 47 3162 21705;21706 14252;14253 14253 37 2 HEANNPQLK Unmodified 1049.5254 0.52540669 377 V9HW72;A8K690;P31948;P31948-2;P31948-3;F5GXD8;F5H783 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 15.9 16.049 2 0.006374 2802 20181213_JW_Orientia_Karp_1_1 101.25 48.85 805390 356360 0 449030 0 0 0 0 0 3597 377 3163 21707;21708 14254;14255 14254 2 HEEAPGHRPTTNPNASK Unmodified 1841.8769 0.87687176 662 Q9BTA4;B4DY28;Q6ZMS3;P21291;B4E2T4;E9PS42;E9PND2;Q59EQ5;E9PP21 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 0 1 By MS/MS 1 13.617 13.968 4 0.020743 2386 20181213_JW_Orientia_Karp_2_3 62.69 40.887 1394000 0 0 0 0 0 1394000 0 0 3598 662 3164 21709 14256 14256 1 HEERQDEHGYISR Unmodified 1654.7448 0.74479495 1553 V9HW43;P04792;B4DL87 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 18.045 18.27 4 0.023798 3286 20181213_JW_Orientia_Karp_1_2 82.774 53.789 10086000 2038000 3918300 3535700 0 0 0 593950 0 3599 1553 3165 21710;21711;21712;21713 14257;14258 14258 2 HEISEMNR Oxidation (M) 1030.4502 0.45019284 799;679 B4E1T1;B4DL32;H0YI76;CON__P13647;P13647 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 1 0 By MS/MS By matching 1 1 12.783 13.134 2 0.032881 2027 20181213_JW_Orientia_Karp_2_3 77.282 37.179 583780 0 0 0 0 0 289440 294340 0 + 3600 679;799 3166 21714;21715 14259 14259 1 HELQANCYEEVK Unmodified 1518.6773 0.67729224 1625 V9HWI5;P23528;G3V1A4;E9PK25;E9PP50 HEL-S-15;CFL1 Cofilin-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 3 30.636 31.043 2;3 3.7172E-05 8079 20181213_JW_Orientia_Karp_3_1 170.4 125.24 34533000 18380000 0 5538400 931110 2081200 0 4949300 2652900 3601 1625 3167 21716;21717;21718;21719;21720;21721;21722;21723;21724;21725;21726;21727;21728 14260;14261;14262;14263;14264;14265 14264 6 HEMPPHIYAITDTAYR Oxidation (M) 1929.9043 0.90433206 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;Q5BKV1 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 41.339 41.639 3 0.0066251 13707 20181213_JW_Orientia_Karp_1_2 97.767 58.623 54137000 13523000 20708000 12020000 0 0 0 7886400 0 3602 47 3168 21729;21730;21731;21732 14266;14267 14267 38 2 HEQEYMEVR Unmodified 1219.5292 0.52917144 614 F5GX39;B4E020;E7EQ72;B4DP27;Q6FHT8;Q15363 TMED2;RNP24 Transmembrane emp24 domain-containing protein 2 yes no 0 0 0 0 By MS/MS 1 28.065 28.065 2 0.0011996 7520 20181213_JW_Orientia_Karp_1_1 128.91 100.82 4908800 4908800 0 0 0 0 0 0 0 3603 614 3169 21733 14268 14268 1 HEQEYMEVR Oxidation (M) 1235.5241 0.52408606 614 F5GX39;B4E020;E7EQ72;B4DP27;Q6FHT8;Q15363 TMED2;RNP24 Transmembrane emp24 domain-containing protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 1 1 20.628 20.826 2 0.039235 4101 20181213_JW_Orientia_Karp_1_2 86.882 64.142 610350 0 0 610350 0 0 0 0 0 3604 614 3169 21734;21735 14269;14270 14269 2 HEQFLQAIHGK Unmodified 1306.6782 0.67821894 1108 Karp_00286 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 2 2 30.96 31.304 3 0.00050827 8062 20181213_JW_Orientia_Karp_2_3 160.91 116.27 2707500000 1175700000 667700000 460320000 181890000 79455000 76002000 0 66456000 3605 1108 3170 21736;21737;21738;21739;21740;21741;21742;21743;21744;21745;21746;21747 14271;14272;14273;14274;14275;14276;14277;14278;14279;14280;14281 14277 11 HEQISQTVK Unmodified 1068.5564 0.55637247 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 18.85 19.075 2 0.012195 3400 20181213_JW_Orientia_Karp_1_3 89.752 10.284 2204800 1089700 416880 530240 0 0 0 168040 0 3606 1149 3171 21748;21749;21750;21751 14282;14283 14283 2 HEVININLK Unmodified 1078.6135 0.61349341 479 Q5TA02;V9HWG9;B2R983;P78417-3;P78417;Q5TA01;P78417-2 GSTO1;HEL-S-21 Glutathione S-transferase omega-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 40.431 40.684 2 0.0038956 13303 20181213_JW_Orientia_Karp_1_2 109.48 56.762 47003000 18953000 24208000 0 0 2484800 0 0 1356800 3607 479 3172 21752;21753;21754;21755 14284;14285 14285 2 HEYWGMR Oxidation (M) 993.41269 0.41268512 1254 Karp_00934 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.793 25.151 2 0.0096195 5465 20181213_JW_Orientia_Karp_2_3 119.56 91.045 215240000 55565000 44735000 29525000 28858000 13449000 8670900 21378000 13058000 3608 1254 3173 21756;21757;21758;21759;21760;21761;21762;21763 14286;14287;14288;14289;14290;14291;14292;14293 14291 818 8 HEYWGMR Unmodified 977.41777 0.41777049 1254 Karp_00934 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 32.6 32.934 2 0.027709 9273 20181213_JW_Orientia_Karp_1_3 92.467 69.686 84648000 30677000 24734000 19620000 3358600 0 1300600 4958000 0 3609 1254 3173 21764;21765;21766;21767;21768;21769 14294 14294 1 HFAIFNSELGK Unmodified 1261.6455 0.64552182 1288 Karp_01160 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 48.897 49.147 2 0.0082362 18666 20181213_JW_Orientia_Karp_1_1 98.943 59.396 50263000 9266000 14545000 10019000 9144900 2545900 4743100 0 0 3610 1288 3174 21770;21771;21772;21773;21774;21775 14295 14295 1 HFCPNVPIILVGNK Unmodified 1606.8654 0.86536778 33 Q5JR08;A0A024R0I3;P08134;E9PQH6;B4DKN9;A0A024R324;P61586;Q9BVT0;Q5JR07;C9JNR4;C9JX21;Q5JR05 RHOC;hCG_2043376;RHOA;ARHA Rho-related GTP-binding protein RhoC;Transforming protein RhoA yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 56.899 57.109 3 0.016005 23204 20181213_JW_Orientia_Karp_1_3 98.407 55.091 19872000 4764100 2887500 6790000 0 2545900 2884900 0 0 3611 33 3175 21776;21777;21778;21779;21780 14296;14297;14298 14296 3 HFCPNVPIILVGNKK Deamidation (NQ) 1735.9443 0.94434638 33 Q5JR08;A0A024R0I3;P08134;E9PQH6;B4DKN9;A0A024R324;P61586;Q9BVT0;Q5JR07;C9JNR4;C9JX21;Q5JR05 RHOC;hCG_2043376;RHOA;ARHA Rho-related GTP-binding protein RhoC;Transforming protein RhoA yes no 0 1 0 1 By MS/MS 1 52.565 52.565 3 0.036907 20899 20181213_JW_Orientia_Karp_1_1 55.724 22.108 4252100 4252100 0 0 0 0 0 0 0 3612 33 3176 21781 14299 14299 0 HFCPNVPIILVGNKK Unmodified 1734.9603 0.9603308 33 Q5JR08;A0A024R0I3;P08134;E9PQH6;B4DKN9;A0A024R324;P61586;Q9BVT0;Q5JR07;C9JNR4;C9JX21;Q5JR05 RHOC;hCG_2043376;RHOA;ARHA Rho-related GTP-binding protein RhoC;Transforming protein RhoA yes no 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 48.796 49.106 3 0.012403 15976 20181213_JW_Orientia_Karp_3_2 79.875 33.882 31042000 7264700 7564800 3050300 2882500 2832400 0 0 7447200 3613 33 3176 21782;21783;21784;21785;21786;21787 14300 14300 1 HFEENNR Unmodified 944.41004 0.41004258 1319 Karp_01281 yes yes 0 0 0 0 By MS/MS By matching 1 1 8.1509 8.7258 2 0.029015 1443 20181213_JW_Orientia_Karp_1_2 90.777 32.965 601360 0 467520 133840 0 0 0 0 0 3614 1319 3177 21788;21789 14301 14301 1 HFIHSVHNR Unmodified 1145.5843 0.58425897 1360 Karp_01811 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 14.125 14.507 3 0.0015433 2599 20181213_JW_Orientia_Karp_1_1 112.41 61.938 13381000 4258400 3433300 2331400 860980 0 1408200 969360 119390 3615 1360 3178 21790;21791;21792;21793;21794;21795;21796;21797 14302;14303;14304;14305;14306;14307 14302 6 HFNAPSHIR Unmodified 1077.5468 0.54681083 1039 J3KTJ8;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KSS0;A0A024RBF6 RPL26;hCG_26523 60S ribosomal protein L26 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 2 21.721 22.113 3 0.00028674 4890 20181213_JW_Orientia_Karp_1_1 152.11 97 67187000 14959000 13701000 10554000 6148900 5030100 6797400 5449200 4547400 3616 1039 3179 21798;21799;21800;21801;21802;21803;21804;21805;21806;21807 14308;14309;14310;14311;14312;14313;14314;14315 14308 8 HFNVGISFLELNK Unmodified 1516.8038 0.80381338 1340 Karp_01512;Karp_01130 no no 0 0 0 0 By MS/MS 1 62.346 62.346 3 0.0013746 27161 20181213_JW_Orientia_Karp_1_1 115.37 68.408 12852000 12852000 0 0 0 0 0 0 0 3617 1340 3180 21808 14316 14316 1 HFQISIPASVIK Unmodified 1338.766 0.76597131 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.887 55.244 2 6.7537E-08 22259 20181213_JW_Orientia_Karp_1_2 192.44 137.72 192630000 41464000 41312000 56391000 15469000 22722000 12478000 619590 2176500 3618 1252 3181 21809;21810;21811;21812;21813;21814;21815;21816 14317;14318;14319;14320;14321;14322;14323 14318 7 HFSGLEEAVYR Unmodified 1306.6306 0.63060004 1695 Q53HU0;P50990;P50990-2;H7C4C8 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 41.968 42.151 2 0.00039257 14033 20181213_JW_Orientia_Karp_1_2 145.9 98.91 33481000 13109000 9645600 10726000 0 0 0 0 0 3619 1695 3182 21817;21818;21819 14324;14325 14324 2 HFSSDIK Unmodified 832.40792 0.40791731 1127 Karp_00330 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 19.012 19.357 2 0.02969 2174 20181213_JW_Orientia_Karp_3_2 89.903 12.529 61989000 15979000 15360000 12165000 5673000 0 3565100 6693800 2552700 3620 1127 3183 21820;21821;21822;21823;21824;21825;21826 14326;14327;14328 14328 3 HGEDYISYIIEQ Unmodified 1465.6725 0.67252444 1280 Karp_01116 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 65.562 65.813 2 0.012146 22949 20181213_JW_Orientia_Karp_3_1 94.297 22.291 34676000 4755000 8212400 0 779460 4851800 3569400 11497000 1011300 3621 1280 3184 21827;21828;21829;21830;21831;21832;21833 14329;14330;14331;14332;14333 14333 5 HGEVCPAGWKPGSDTIKPDVQK Unmodified 2405.1798 0.17977864 1773 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 37.291 37.625 4 0.01309 10612 20181213_JW_Orientia_Karp_2_2 63.443 42.847 167640000 44236000 25700000 53338000 3328800 10695000 0 30340000 0 3622 1773 3185 21834;21835;21836;21837;21838;21839 14334;14335;14336;14337;14338 14337 4 HGFEAASIK Unmodified 958.48723 0.48723027 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;E7ERA5;G1UI33;Q9UE82 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 27.443 27.82 2 0.0013744 6968 20181213_JW_Orientia_Karp_1_2 126.41 34.506 29930000 10461000 6894800 8114600 0 1765900 0 2303300 390370 3623 944 3186 21840;21841;21842;21843;21844;21845 14339;14340 14340 2 HGGGGGGFGGGGFGSR Unmodified 1319.5755 0.57554478 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 1 27.706 28.023 2;3 0.00018549 7461 20181213_JW_Orientia_Karp_1_1 145.14 119.33 185490000 29619000 20230000 49728000 18261000 19472000 12622000 26961000 8596400 + 3624 804;1657 3187 21846;21847;21848;21849;21850;21851;21852;21853;21854;21855;21856;21857;21858 14341;14342;14343;14344;14345;14346;14347;14348 14341 8 HGLTEQSK Unmodified 898.45084 0.45084476 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 6.4652 6.9024 2 0.003578 1207 20181213_JW_Orientia_Karp_3_2 153.04 70.61 1080900 0 127580 0 0 296490 0 0 656810 3625 1166 3188 21859;21860;21861 14349;14350;14351 14351 3 HGSGSGHSSSYGQHGSGSGWSSSSGR Unmodified 2476.0137 0.013652602 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 2 2 15.981 16.447 3;4 0.00035291 3260 20181213_JW_Orientia_Karp_3_1 91.238 75.142 35267000 0 1919000 2040800 4943000 488630 1352900 5162800 19360000 + 3626 820 3189 21862;21863;21864;21865;21866;21867;21868;21869;21870;21871;21872 14352;14353;14354;14355;14356;14357;14358;14359 14358 8 HGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSYEQHGSR Unmodified 4402.8018 0.80176893 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By MS/MS 1 23.993 24.545 5 0.042851 5397 20181213_JW_Orientia_Karp_3_1 15.954 5.6667 1095000 0 0 0 0 0 0 1095000 0 + 3627 820 3190 21873 14360 14360 1 HGSGSGQSSSYGPYGSGSGWSSSR Unmodified 2317.9584 0.95842913 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.268 34.601 3 2.0998E-10 10529 20181213_JW_Orientia_Karp_1_1 157.02 131.68 92354000 13963000 17025000 18129000 13305000 11100000 0 18831000 0 + 3628 820 3191 21874;21875;21876;21877;21878;21879;21880 14361;14362;14363;14364;14365;14366;14367 14361 7 HGSGSGQSSSYGPYR Unmodified 1525.6546 0.65458296 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By MS/MS By matching 1 1 21.378 21.728 3 0.020693 4129 20181213_JW_Orientia_Karp_2_1 63.682 40.765 1987100 0 0 0 1523600 463590 0 0 0 + 3629 820 3192 21881;21882 14368 14368 1 HGSGSGQSSSYSPYGSGSGWSSSR Unmodified 2347.969 0.96899382 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 34.172 34.545 3 0.0015673 10127 20181213_JW_Orientia_Karp_1_2 85.013 50.292 117510000 28056000 16928000 14599000 12390000 11813000 0 28379000 5346100 + 3630 820 3193 21883;21884;21885;21886;21887;21888;21889 14369 14369 1 HGSSQVWK Unmodified 927.45626 0.45626449 817 CON__Q5D862;Q5D862 FLG2 Filaggrin-2 yes no 0 0 0 0 By MS/MS By matching 1 1 17.119 17.469 2 0.014899 2867 20181213_JW_Orientia_Karp_2_1 95.909 58.264 1225100 0 0 0 776410 0 0 448690 0 + 3631 817 3194 21890;21891 14370 14370 1 HGSSSGSSSSYGQHGSGSR Unmodified 1807.747 0.7469798 820 CON__Q86YZ3;Q86YZ3 HRNR Hornerin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 2.7902 2.9425 3 0.007555 527 20181213_JW_Orientia_Karp_1_1 77.795 66.104 760050 108210 0 0 0 73708 147910 202780 227450 + 3632 820 3195 21892;21893;21894;21895;21896 14371 14371 1 HGTQTVIQPVDIANTGGLAVDNLVYICDGK Deamidation (NQ) 3168.5761 0.57612822 1193 Karp_00798 yes yes 0 1 0 0 By MS/MS By matching 1 1 70.853 70.928 3 0.00052682 32305 20181213_JW_Orientia_Karp_1_1 77.509 57.012 7188300 4261200 0 0 0 2927100 0 0 0 3633 1193 3196 21897;21898 14372 14372 606 0 HGTQTVIQPVDIANTGGLAVDNLVYICDGK Unmodified 3167.5921 0.59211263 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 70.642 70.775 3 7.6068E-06 31859 20181213_JW_Orientia_Karp_1_3 93.74 75.946 23133000 0 8114500 6075000 0 0 0 8943100 0 3634 1193 3196 21899;21900;21901 14373;14374 14374 2 HGVQELEIELQSQLSK Unmodified 1836.9581 0.95814177 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 57.316 57.661 2;3 5.9095E-63 23796 20181213_JW_Orientia_Karp_1_2 281.6 204.31 1912200000 249460000 190310000 128140000 199610000 486650000 386760000 83899000 187380000 + 3635 1653 3197 21902;21903;21904;21905;21906;21907;21908;21909;21910;21911;21912;21913;21914;21915;21916;21917 14375;14376;14377;14378;14379;14380;14381;14382;14383;14384;14385 14377 11 HGVQELEIELQSQLSKK Unmodified 1965.0531 0.053104788 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.524 51.869 3 1.7325E-83 17878 20181213_JW_Orientia_Karp_3_1 286.85 251.75 175980000 19482000 25396000 28821000 28175000 32781000 22358000 13064000 5897700 + 3636 1653 3198 21918;21919;21920;21921;21922;21923;21924;21925 14386;14387;14388;14389;14390;14391;14392;14393 14392 8 HHAAYVNNLNR Unmodified 1307.6483 0.64831579 1415 Karp_02252 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 18.963 19.321 3 1.6857E-13 3900 20181213_JW_Orientia_Karp_1_2 244.8 181.48 179170000 61985000 33901000 8876500 30633000 9560000 19247000 6114100 8851400 3637 1415 3199 21926;21927;21928;21929;21930;21931;21932;21933 14394;14395;14396;14397;14398;14399 14395 6 HHAAYVNNLNR Deamidation (NQ) 1308.6323 0.63233138 1415 Karp_02252 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 3 3 3 2 2 2 22.336 22.66 2;3 0.00045426 4591 20181213_JW_Orientia_Karp_1_3 145.46 88.287 175850000 2752700 71448000 20994000 32782000 30845000 6223500 6100100 4706100 3638 1415 3199 21934;21935;21936;21937;21938;21939;21940;21941;21942;21943;21944;21945;21946;21947;21948;21949;21950;21951;21952;21953 14400;14401;14402;14403;14404;14405 14401 932 5 HHCPNTPIILVGTK Unmodified 1585.8399 0.83988131 302 A4D2P2;A4D2P1;A4D2P0;P63000;P63000-2;A0A024R9T5 RAC1;hCG_20693 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 37.228 37.527 3 0.03978 11646 20181213_JW_Orientia_Karp_1_2 46.408 2.417 114440000 56138000 22207000 19740000 0 0 0 16350000 0 3639 302 3200 21954;21955;21956;21957 14406 14406 1 HHPFQNILYSNALK Unmodified 1680.8736 0.87362428 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 43.647 43.911 3 0.0023666 15639 20181213_JW_Orientia_Karp_1_1 103.97 49.325 45922000 21490000 19156000 4335100 0 0 0 0 941150 3640 1428 3201 21958;21959;21960;21961 14407;14408 14407 2 HHSLGGQYGVQGFPTIK Unmodified 1824.9271 0.92711641 1802 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 43.031 43.373 3 0.00032447 14620 20181213_JW_Orientia_Karp_1_3 119.46 86.158 117630000 25250000 48728000 16956000 0 0 0 24492000 2205800 3641 1802 3202 21962;21963;21964;21965;21966 14409;14410;14411;14412 14410 4 HHVQELCNCFPIYTN Unmodified 1930.8454 0.84543697 1140 Karp_00452 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 1 1 50.344 50.649 2;3 0.004396 17112 20181213_JW_Orientia_Karp_3_1 110.31 72.88 204290000 53721000 45327000 34839000 30970000 11824000 17552000 7104700 2953800 3642 1140 3203 21967;21968;21969;21970;21971;21972;21973;21974;21975;21976;21977;21978;21979;21980 14413;14414;14415;14416 14416 4 HHYEIGK Unmodified 882.4348 0.43480077 1364 Karp_01859 yes yes 0 0 0 0 By MS/MS 1 13.637 14.088 2 0.033742 2352 20181213_JW_Orientia_Karp_3_1 86.866 31.425 271090 0 0 0 0 0 0 271090 0 3643 1364 3204 21981 14417 14417 1 HIADLAGNSEVILPVPAFNVINGGSHAGNK Deamidation (NQ) 3011.5465 0.54648307 93 A0A024R4F1;P06733;K7EM90;E2DRY6;P06733-2;A4UCS8 ENO1 Alpha-enolase;Enolase yes no 0 1 0 0 By matching By MS/MS By matching 1 1 1 68.985 69.136 4 0.0021329 27848 20181213_JW_Orientia_Karp_2_3 58.722 21.823 10391000 0 0 0 0 3063000 2618600 4709200 0 3644 93 3205 21982;21983;21984 14418 14418 49 1 HIENTTAFIK Unmodified 1172.619 0.61897272 1361 Karp_01814 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.583 34.916 2 0.0011996 9154 20181213_JW_Orientia_Karp_2_2 120.31 63.585 49471000 14981000 13240000 13969000 2328000 1869900 0 3084100 0 3645 1361 3206 21985;21986;21987;21988;21989;21990;21991;21992 14419;14420;14421;14422;14423;14424;14425 14422 7 HIEVIITR Unmodified 979.58147 0.581465 1169 Karp_00623 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 37.66 37.842 2 0.0070523 11672 20181213_JW_Orientia_Karp_1_3 113.26 28.513 40469000 5831500 13037000 21601000 0 0 0 0 0 3646 1169 3207 21993;21994;21995 14426;14427 14427 2 HIGQQYANK Unmodified 1057.5305 0.53049207 1394 Karp_02146 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 17.195 17.37 2 0.0035694 2903 20181213_JW_Orientia_Karp_1_3 111.04 71.389 4513000 903820 2411200 970150 227870 0 0 0 0 3647 1394 3208 21996;21997;21998;21999 14428;14429;14430 14430 3 HIHITQATETTTTR Unmodified 1608.822 0.82198264 1799 Q14677;Q14677-3;Q14677-2 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 24.528 24.861 3 1.7208E-12 5777 20181213_JW_Orientia_Karp_1_2 206.45 163.51 71502000 11825000 20669000 9156300 5595400 7033200 3651300 9162000 4409800 3648 1799 3209 22000;22001;22002;22003;22004;22005;22006;22007 14431;14432;14433;14434;14435;14436;14437;14438 14432 8 HILLAVANDEELNQLLK Deamidation (NQ) 1933.052 0.052042156 1518 O75367-2;O75367-3;O75367;D6RCF2;Q9HA11;A0A024QZP6;Q9P0M6 H2AFY;H2AFY2 Core histone macro-H2A.1;Histone H2A;Core histone macro-H2A;Core histone macro-H2A.2 yes no 0 1 0 0 By MS/MS 1 70.505 70.505 3 0.02183 32047 20181213_JW_Orientia_Karp_1_1 149.3 105.17 0 0 0 0 0 0 0 0 0 3649 1518 3210 22008 14439 14439 1018 1 HILLAVANDEELNQLLK Unmodified 1932.068 0.068026571 1518 O75367-2;O75367-3;O75367;D6RCF2;Q9HA11;A0A024QZP6;Q9P0M6 H2AFY;H2AFY2 Core histone macro-H2A.1;Histone H2A;Core histone macro-H2A;Core histone macro-H2A.2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 65.774 65.964 2 0.00021089 28962 20181213_JW_Orientia_Karp_1_2 136.33 108.66 40170000 8783400 16369000 5526800 0 0 874830 8616100 0 3650 1518 3210 22009;22010;22011;22012;22013 14440;14441;14442;14443 14440 4 HILSFSQSDSVDNFDSHTNLPNLPAIDFSNIGIGNPK Unmodified 4009.9446 0.94462356 1178 Karp_00644 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 72.412 72.505 4 0.0099284 29212 20181213_JW_Orientia_Karp_2_2 45.703 24.281 267220000 63009000 56816000 99425000 9444800 17056000 0 0 21471000 3651 1178 3211 22014;22015;22016;22017;22018;22019 14444;14445 14445 2 HIMGQNVADYMR Oxidation (M) 1449.6493 0.64930335 286 B3KTM6;A2RUM7;P46777;Q59GX9 RPL5 60S ribosomal protein L5 yes no 0 0 1 0 By MS/MS 1 34.39 34.39 2 0.041573 10504 20181213_JW_Orientia_Karp_1_1 86.344 40.343 0 0 0 0 0 0 0 0 0 3652 286 3212 22020 14446 14446 203;204 1 HIMGQNVADYMR 2 Oxidation (M) 1465.6442 0.64421797 286 B3KTM6;A2RUM7;P46777;Q59GX9 RPL5 60S ribosomal protein L5 yes no 0 0 2 0 By matching By MS/MS By matching By matching 1 1 1 1 28.212 28.5 3 0.0066648 7155 20181213_JW_Orientia_Karp_1_3 93.345 63.206 22535000 0 4573700 13262000 0 4102900 596870 0 0 3653 286 3212 22021;22022;22023;22024 14447 14447 203;204 1 HISNWNNNIEPINASSNNFAVK Unmodified 2482.1989 0.19893418 1300 Karp_01233 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 51.222 51.554 3 0.0076731 20271 20181213_JW_Orientia_Karp_1_1 69.133 21.406 48876000 22187000 12479000 0 7922600 5486000 0 0 801240 3654 1300 3213 22025;22026;22027;22028;22029 14448 14448 1 HISNWNNNIEPINASSNNFAVK 2 Deamidation (NQ) 2484.167 0.16696535 1300 Karp_01233 yes yes 0 2 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 55.443 55.643 3 0.017195 23144 20181213_JW_Orientia_Karp_1_1 58.366 28.923 44791000 12629000 9994700 17869000 0 0 4298700 0 0 3655 1300 3213 22030;22031;22032;22033 14449;14450 14449 728;729;730;731;732 2 HISNWNNNIEPINASSNNFAVK Deamidation (NQ) 2483.1829 0.18294976 1300 Karp_01233 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 1 1 53.249 53.558 3 0.0028184 19334 20181213_JW_Orientia_Karp_2_1 99.409 68.643 114020000 30232000 14984000 42314000 8944500 8522000 6294400 2436200 295350 3656 1300 3213 22034;22035;22036;22037;22038;22039;22040;22041;22042;22043;22044;22045;22046 14451;14452;14453;14454;14455 14453 728;729;730;731;732 5 HISQISVAEDDDESLLGHLMIVGK Unmodified 2605.3058 0.30576701 1687 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 64.755 64.935 3 0.00093783 28786 20181213_JW_Orientia_Karp_1_1 92.39 60.765 31518000 12174000 11255000 0 1261100 4269200 2558100 0 0 3657 1687 3214 22047;22048;22049;22050;22051 14456 14456 1 HIVLSGGSTMYPGLPSR Oxidation (M) 1786.9036 0.90360378 1721 P61160;F5H6T1;B4DWQ5;Q8IY98;B4DHK9;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 46.617 46.91 3 0.010753 16760 20181213_JW_Orientia_Karp_1_2 88.561 51.385 120170000 50420000 14834000 24122000 8433800 0 6696800 0 15668000 3658 1721 3215 22052;22053;22054;22055;22056;22057 14457;14458 14458 1348 2 HIVTFDGQNFK Unmodified 1304.6513 0.65133548 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 41.466 41.682 2 0.025671 14317 20181213_JW_Orientia_Karp_1_1 82.029 50.955 49289000 29467000 0 18665000 1156300 0 0 0 0 3659 1466;1549 3216 22058;22059;22060;22061 14459;14460 14459 2 HIYAQVIENIGSNK Unmodified 1584.826 0.82600539 1226 Karp_00893 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 45.204 45.484 2;3 1.9095E-46 14289 20181213_JW_Orientia_Karp_3_2 269.04 207.28 510920000 104460000 148570000 142130000 28791000 10219000 24432000 10649000 41672000 3660 1226 3217 22062;22063;22064;22065;22066;22067;22068;22069;22070;22071;22072;22073 14461;14462;14463;14464;14465;14466 14466 6 HIYYITGETK Unmodified 1223.6186 0.61863837 1057 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q96HX7;Q86U12;Q58FG0 EL52;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 34.298 34.619 2 0.00039835 10158 20181213_JW_Orientia_Karp_1_2 138.06 97.284 146810000 45772000 46409000 34223000 4104100 1841900 2164200 12299000 0 3661 1057 3218 22074;22075;22076;22077;22078;22079;22080 14467;14468;14469 14468 3 HIYYSSGGGELGQK Unmodified 1494.7103 0.71030693 1293 Karp_01182 yes yes 0 0 0 0 By MS/MS By matching 1 1 31.327 31.502 3 0.03134 8977 20181213_JW_Orientia_Karp_1_1 53.947 21.788 5949400 3438700 2510600 0 0 0 0 0 0 3662 1293 3219 22081;22082 14470 14470 1 HKPHFAEAYNNK Unmodified 1454.7055 0.70549632 1323;1152 Karp_01552;Karp_00538;Karp_01308 no no 0 0 0 1 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 18.16 18.39 3 0.001383 3126 20181213_JW_Orientia_Karp_1_3 130.1 96.228 8404100 1135200 4194500 1745300 653000 0 0 676050 0 3663 1152;1323 3220 22083;22084;22085;22086;22087 14471;14472 14471 2 HKPHFAEAYNNK Deamidation (NQ) 1455.6895 0.6895119 1323;1152 Karp_01552;Karp_00538;Karp_01308 no no 0 1 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 19.232 19.496 3 0.024802 3558 20181213_JW_Orientia_Karp_1_3 90.434 58.676 21012000 9427900 6237300 2317600 1020700 60306 1083300 864630 0 3664 1152;1323 3220 22088;22089;22090;22091;22092;22093;22094 14473 14473 547 1 HKVYFATEK Unmodified 1121.5869 0.58694431 1108 Karp_00286 yes yes 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 20.407 20.694 3 0.028978 3968 20181213_JW_Orientia_Karp_1_3 79.489 20.139 8603000 0 2984900 2770900 2042000 0 0 805160 0 3665 1108 3221 22095;22096;22097;22098 14474 14474 1 HLDEVGIVNIGAK Unmodified 1363.746 0.74596415 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 47.453 47.723 3 0.00026739 16255 20181213_JW_Orientia_Karp_2_1 147.62 86.271 129680000 18564000 71869000 19525000 10771000 0 8955000 0 0 3666 1170 3222 22099;22100;22101;22102;22103 14475;14476;14477;14478;14479 14478 5 HLDLSNVAGYK Unmodified 1215.6248 0.62478638 103 A0A024R4X1;Q6FIA3;Q9UNF0-2;Q9UNF0 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 42.522 42.638 2 0.019868 14172 20181213_JW_Orientia_Karp_1_3 85.377 47.902 22854000 10244000 0 11340000 0 1270100 0 0 0 3667 103 3223 22104;22105;22106 14480 14480 1 HLEINPDHPIVETLR Unmodified 1781.9424 0.94243213 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 HSP90AB1 Heat shock protein HSP 90-beta yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.668 46.97 3 0.00030778 14913 20181213_JW_Orientia_Karp_3_2 162.88 98.327 827740000 346450000 215650000 155030000 0 23014000 23742000 1169200 62687000 3668 251 3224 22107;22108;22109;22110;22111;22112;22113;22114 14481;14482;14483;14484;14485 14485 5 HLEINPDHSIIETLR Unmodified 1785.9373 0.93734675 1057 K9JA46;P07900;P07900-2;Q8TBA7;O75322;Q96HX7 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 49.564 49.904 3 2.9514E-05 16562 20181213_JW_Orientia_Karp_3_2 152.34 114.04 299780000 77799000 72065000 59419000 26211000 14197000 16625000 0 33464000 3669 1057 3225 22115;22116;22117;22118;22119;22120;22121;22122 14486;14487;14488;14489;14490;14491;14492;14493 14492 8 HLGYKPEEYK Unmodified 1262.6295 0.62953741 1488 O00159;D3DTH7;F5H6E2;B7Z3E5;O00159-2;O00159-3;B7Z9C0 MYO1C Unconventional myosin-Ic yes no 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 24.22 24.563 3 0.038967 4511 20181213_JW_Orientia_Karp_3_2 72.325 28.334 12189000 2513200 0 4312700 0 1416500 592320 1793500 1560300 3670 1488 3226 22123;22124;22125;22126;22127;22128 14494 14494 0 HLIPAANTGESK Unmodified 1236.6463 0.64625011 1728 V9HW98;P62258;G9K389;G9K388;P62258-2;B7ZA86 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 27.824 28.146 2 0.0021959 7548 20181213_JW_Orientia_Karp_1_1 119.34 56.871 49736000 8200800 7445000 19805000 3467700 2381100 2365700 6070400 0 3671 1728 3227 22129;22130;22131;22132;22133;22134;22135 14495;14496;14497;14498;14499;14500;14501;14502 14495 7 HLISTHFAPGDFQGFALVNPQR Unmodified 2451.2448 0.24476216 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 60.778 60.978 4 0.011566 26330 20181213_JW_Orientia_Karp_1_1 65.808 42.081 56063000 30075000 5747400 16380000 0 3860300 0 0 0 3672 195 3228 22136;22137;22138;22139 14503 14503 1 HLLQAPVDDAQEILHSR Unmodified 1941.0068 0.0068232975 563 B4DF60;F5H365;B4DSQ5;Q15436-2;Q15436 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 51.407 51.733 3 0.012701 17651 20181213_JW_Orientia_Karp_3_2 74.428 40.812 59062000 17157000 19041000 13974000 4985700 0 2431000 0 1473200 3673 563 3229 22140;22141;22142;22143;22144;22145 14504 14504 1 HLLTQIFR Unmodified 1026.5974 0.59744942 1134 Karp_00400 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 47.264 47.534 2 0.0095949 17586 20181213_JW_Orientia_Karp_1_1 105.14 69.78 78365000 20882000 31939000 13689000 4661600 0 7193600 0 0 3674 1134 3230 22146;22147;22148;22149;22150 14505;14506;14507 14505 3 HLNDDVVK Unmodified 938.48214 0.48214489 1766 Q2TNI1;Q03135;E9PCT5;A9XTE5;Q59E85;C9JKI3;Q7Z4F3;A0A024R757;Q03135-2 CAV1 Caveolin;Caveolin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 22.797 23.061 2 0.0041676 4955 20181213_JW_Orientia_Karp_1_2 145.16 81.849 84649000 13262000 41628000 15094000 3928600 2663700 3450700 4620900 0 3675 1766 3231 22151;22152;22153;22154;22155;22156;22157;22158 14508;14509;14510;14511;14512;14513;14514;14515 14509 8 HLNLIGSSAEDK Unmodified 1282.6517 0.65172941 1449 Karp_02529 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.32 34.642 2 0.0018417 10088 20181213_JW_Orientia_Karp_1_3 123.67 45.155 31746000 8583600 7906400 8376800 2087000 1170000 853800 2768700 0 3676 1449 3232 22159;22160;22161;22162;22163;22164;22165 14516;14517;14518;14519;14520 14517 5 HLNTLINFK Unmodified 1098.6186 0.61857879 1292 Karp_01179 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 43.784 44.144 2 0.018891 15723 20181213_JW_Orientia_Karp_1_1 88.177 45.308 21874000 7592300 7145600 5379000 1133400 0 0 501220 122100 3677 1292 3233 22166;22167;22168;22169;22170;22171 14521 14521 1 HLQLAIR Unmodified 849.51847 0.51847082 28;1602;1580 A3KPC7;A0A024RAS2;Q08AJ9;B2R5B3;A4FTV9;A0A024R017;Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;B4E0B3;B2R5B6;Q96QV6;Q9BTM1-2;P16104;Q71UI9;P0C0S5;C9J0D1;Q71UI9-3;Q71UI9-4;Q71UI9-2;C9J386 HIST1H2AH;H2AFJ;HIST1H2AB;HIST1H2AK;HIST1H2AC;HIST1H2AJ;HIST2H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AA;H2AFX;H2AFV;H2AFZ Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2AX;Histone H2A.V;Histone H2A.Z no no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 2 1 2 2 1 1 34.801 35.097 2 0.01703 10480 20181213_JW_Orientia_Karp_1_1 107.74 22.438 37600000000 20775000000 73548000 16433000000 3297700 25067000 249380000 20934000 19798000 3678 28;1602;1580 3234 22172;22173;22174;22175;22176;22177;22178;22179;22180;22181;22182;22183 14522;14523;14524;14525;14526 14522 5 HLQLAIRNDEELNK Unmodified 1691.8955 0.89548193 28;1602 A3KPC7;A0A024RAS2;Q08AJ9;B2R5B3;A4FTV9;A0A024R017;Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;B4E0B3;B2R5B6;Q96QV6;Q9BTM1-2;P16104 HIST1H2AH;H2AFJ;HIST1H2AB;HIST1H2AK;HIST1H2AC;HIST1H2AJ;HIST2H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AA;H2AFX Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2AX no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 36.656 36.977 3 6.4442E-05 11834 20181213_JW_Orientia_Karp_1_1 163.71 117.51 374540000 144860000 72317000 102810000 4289000 14889000 6360600 29011000 0 3679 28;1602 3235 22184;22185;22186;22187;22188;22189;22190 14527;14528;14529;14530;14531 14527 5 HLQLAIRNDEELNK Deamidation (NQ) 1692.8795 0.87949752 28;1602 A3KPC7;A0A024RAS2;Q08AJ9;B2R5B3;A4FTV9;A0A024R017;Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;B4E0B3;B2R5B6;Q96QV6;Q9BTM1-2;P16104 HIST1H2AH;H2AFJ;HIST1H2AB;HIST1H2AK;HIST1H2AC;HIST1H2AJ;HIST2H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AA;H2AFX Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2AX no no 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 1 39.427 39.741 3 0.00025586 13271 20181213_JW_Orientia_Karp_1_2 158.86 104.99 2361600000 1266500000 152110000 866660000 15598000 5109000 0 55644000 0 3680 28;1602 3235 22191;22192;22193;22194;22195;22196;22197;22198;22199;22200;22201;22202;22203;22204 14532;14533;14534;14535;14536;14537;14538;14539 14534 3 8 HLQLAVR Unmodified 835.50282 0.50282075 1899 Q8IUE6;A2RUA4 HIST2H2AB Histone H2A type 2-B;Histone H2A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 29.446 29.817 2 0.01198 7298 20181213_JW_Orientia_Karp_2_3 137.83 39.413 959360000 236460000 144640000 331600000 16756000 20296000 12106000 160750000 36748000 3681 1899 3236 22205;22206;22207;22208;22209;22210;22211;22212 14540;14541;14542;14543;14544;14545;14546;14547 14545 8 HLQNLLRSQQQGGLK 4 Deamidation (NQ) 1722.8901 0.89006221 1474 L8ECN6 FAM71A yes yes 0 4 0 1 By MS/MS 1 77.065 77.065 2 0.033745 36305 20181213_JW_Orientia_Karp_1_1 57.174 19.574 0 0 0 0 0 0 0 0 0 3682 1474 3237 22213 14548 14548 1893;1894;1895;1896 1 HLREYQDLLNVK Unmodified 1526.8205 0.82052608 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;Q9H319;Q5RLN2;B4DE66;Q59EM6;E7EMV2;B4DJT7;E7ESP9;A5YM63;Q16352;P07197-2;P07197 HEL113;VIM;tmp_locus_29;DES;NEFM;INA Vimentin;Desmin;Alpha-internexin;Neurofilament medium polypeptide yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 41.835 42.136 3 0.0055554 13897 20181213_JW_Orientia_Karp_1_3 164.48 108.51 50017000 19681000 12718000 10655000 0 1444800 1238200 3798100 481320 3683 1571 3238 22214;22215;22216;22217;22218;22219;22220 14549;14550 14550 2 HLSLTNGLPFGGTLAAGMTIAPGFR Oxidation (M) 2514.3053 0.3053135 1371 Karp_02001 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 69.451 69.61 3 0.0027937 24892 20181213_JW_Orientia_Karp_3_1 75.646 49.465 173850000 34900000 19469000 35644000 4566600 0 13853000 50100000 15315000 3684 1371 3239 22221;22222;22223;22224;22225;22226;22227 14551;14552 14552 954 2 HLSLTNGLPFGGTLAAGMTIAPGFR Oxidation (M);Deamidation (NQ) 2515.2893 0.28932909 1371 Karp_02001 yes yes 0 1 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 2 3 2 3 71.868 71.97 3 4.5989E-05 29407 20181213_JW_Orientia_Karp_2_3 113.7 81.779 3595000000 1249900000 681910000 104110000 309830000 228670000 202090000 687820000 130710000 3685 1371 3239 22228;22229;22230;22231;22232;22233;22234;22235;22236;22237;22238;22239;22240;22241;22242;22243;22244;22245;22246 14553;14554;14555;14556;14557;14558;14559;14560 14558 837 954 8 HLSLTNGLPFGGTLAAGMTIAPGFR Deamidation (NQ) 2499.2944 0.29441447 1371 Karp_02001 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 74.437 74.453 3 0.0014144 34241 20181213_JW_Orientia_Karp_1_3 94.359 67.212 149670000 38453000 17785000 63751000 0 8248000 3878500 17551000 0 3686 1371 3239 22247;22248;22249;22250;22251;22252 14561;14562 14561 837 2 HLTSNSPR Unmodified 910.46208 0.46207815 59 A0A024R1X8;P14923;Q7KZ86 JUP Junction plakoglobin yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 13.771 14.07 2 0.015671 2060 20181213_JW_Orientia_Karp_1_3 94.662 36.002 170990 0 65253 53136 52601 0 0 0 0 3687 59 3240 22253;22254;22255 14563 14563 1 HLVDEPQNLIK Unmodified 1304.7089 0.70885036 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 1 42.867 43.171 2;3 4.0686E-13 13878 20181213_JW_Orientia_Karp_2_1 220.39 137.97 2886800000 657650000 882640000 341140000 303420000 1865700 104020000 596100000 0 + 3688 792 3241 22256;22257;22258;22259;22260;22261;22262;22263;22264;22265;22266;22267;22268;22269;22270;22271 14564;14565;14566;14567;14568;14569;14570;14571;14572 14567 9 HLVDEPQNLIK Deamidation (NQ) 1305.6929 0.69286595 792 CON__P02769 yes yes 0 1 0 0 By MS/MS 1 44.834 45.085 2 0.0023453 15230 20181213_JW_Orientia_Karp_2_3 161.63 122.49 0 0 0 0 0 0 0 0 0 + 3689 792 3241 22272 14573 14573 268 1 HLVVGLAALSNANK Unmodified 1405.8041 0.80414773 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 47.943 48.248 2;3 2.7023E-05 16300 20181213_JW_Orientia_Karp_3_1 169.82 139.25 844680000 156310000 285870000 136480000 84850000 36475000 126820000 2742300 15144000 3690 1371 3242 22273;22274;22275;22276;22277;22278;22279;22280;22281;22282;22283;22284;22285;22286;22287 14574;14575;14576;14577;14578;14579;14580;14581;14582 14581 9 HLVVGLAALSNANK Deamidation (NQ) 1406.7882 0.78816332 1371 Karp_02001 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 1 1 51.772 52.103 2;3 2.635E-07 20212 20181213_JW_Orientia_Karp_1_2 183.99 141.59 74054000 18748000 7272900 11325000 20984000 2195700 9685200 3363100 480710 3691 1371 3242 22288;22289;22290;22291;22292;22293;22294;22295;22296;22297 14583;14584;14585;14586;14587;14588;14589 14584 838;839 7 HLVVGLAALSNANKPSASPVK Unmodified 2072.1742 0.17422298 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 6 10 5 4 6 7 6 7 46.855 47.175 2;3;4 2.3074E-10 16009 20181213_JW_Orientia_Karp_1_3 208.38 186.33 32681000000 3068100000 12217000000 10219000000 853110000 213380000 2838600000 670150000 2601800000 3692 1371 3243 22298;22299;22300;22301;22302;22303;22304;22305;22306;22307;22308;22309;22310;22311;22312;22313;22314;22315;22316;22317;22318;22319;22320;22321;22322;22323;22324;22325;22326;22327;22328;22329;22330;22331;22332;22333;22334;22335;22336;22337;22338;22339;22340;22341;22342;22343;22344;22345;22346;22347;22348 14590;14591;14592;14593;14594;14595;14596;14597;14598;14599;14600;14601;14602;14603;14604;14605;14606 14598 16 HLVVGLAALSNANKPSASPVK Deamidation (NQ) 2073.1582 0.15823856 1371 Karp_02001 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 4 6 4 5 3 3 4 48.257 48.563 3;4 3.6396E-17 16954 20181213_JW_Orientia_Karp_1_3 193.27 163.14 12689000000 2226600000 4582300000 2682500000 1004700000 724250000 451640000 25596000 991400000 3693 1371 3243 22349;22350;22351;22352;22353;22354;22355;22356;22357;22358;22359;22360;22361;22362;22363;22364;22365;22366;22367;22368;22369;22370;22371;22372;22373;22374;22375;22376;22377;22378;22379;22380;22381;22382;22383 14607;14608;14609;14610;14611;14612;14613;14614;14615;14616;14617;14618;14619;14620;14621;14622;14623;14624;14625;14626;14627 14612 838;839 19 HLVVGLAALSNANKPSASPVK 2 Deamidation (NQ) 2074.1423 0.14225415 1371 Karp_02001 yes yes 0 2 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 50.158 50.524 3 0.00013234 17836 20181213_JW_Orientia_Karp_2_2 134.04 98.712 110110000 44880000 23090000 0 14502000 7762900 7830600 8122800 3921600 3694 1371 3243 22384;22385;22386;22387;22388;22389;22390 14628;14629 14629 838;839 1 HLVYESDK Unmodified 989.48181 0.48181054 1805 V9HW95;Q15293;Q15293-2;Q5J7V8 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 22.118 22.319 2 0.0044934 4332 20181213_JW_Orientia_Karp_2_3 130.27 72.413 11765000 4756200 0 0 0 3589700 3418700 0 0 3695 1805 3244 22391;22392;22393;22394;22395;22396 14630;14631;14632;14633;14634 14633 5 HLVYESDQNK Unmodified 1231.5833 0.5833155 514 Q6IAW5;B3KQF5;O43852;O43852-3;B3KNG6;A0A024R755;O43852-2;O43852-4;O43852-5;H0Y875;O43852-9;O43852-15;B3KQK3 CALU Calumenin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 22.604 22.885 2 0.00090418 3939 20181213_JW_Orientia_Karp_2_2 126.24 70.738 12964000 4021800 1964800 0 4050600 1665900 0 1261300 0 3696 514 3245 22397;22398;22399;22400;22401;22402;22403 14635;14636;14637;14638;14639;14640;14641 14640 7 HLWDYTFGPEK Unmodified 1391.651 0.65100113 1721 P61160;F5H6T1;B4DWQ5;Q8IY98;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 53.826 54.198 2 0.00096771 21544 20181213_JW_Orientia_Karp_1_2 129.85 87.609 57441000 23528000 22941000 0 0 0 5209500 1840100 3922100 3697 1721 3246 22404;22405;22406;22407;22408 14642;14643;14644;14645 14643 4 HMHNMMLLQQNMK 2 Oxidation (M);3 Deamidation (NQ) 1689.6983 0.69830373 883 E7EVZ1;Q86UP3-3;Q86UP3;Q86UP3-4;Q86UP3-2;Q86UP3-5 ZFHX4 Zinc finger homeobox protein 4 yes no 0 3 2 0 By MS/MS 1 25.008 25.818 2 0.027166 5013 20181213_JW_Orientia_Karp_3_2 56.729 17.105 0 0 0 0 0 0 0 0 0 3698 883 3247 22409 14646 14646 315;316;1696;1697 504;505 1 HMYHSLYLK Unmodified 1190.5906 0.59064948 1038 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 0 0 0 0 By MS/MS By matching 1 1 30.132 30.231 3 0.032306 8503 20181213_JW_Orientia_Karp_1_1 82.426 31.621 4225900 2336200 0 1889800 0 0 0 0 0 3699 1038 3248 22410;22411 14647 14647 1 HMYHSLYLK Oxidation (M) 1206.5856 0.5855641 1038 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 25.878 26.223 3 0.036688 6308 20181213_JW_Orientia_Karp_1_3 69.812 9.7925 31083000 5685800 13090000 5467700 0 1202700 853750 2952100 1830500 3700 1038 3248 22412;22413;22414;22415;22416;22417;22418 14648 14648 1 HNEIFFTVQR Unmodified 1289.6517 0.65166983 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 45.55 45.87 2 2.5207E-28 15147 20181213_JW_Orientia_Karp_3_1 232.72 142.35 2205400000 517630000 621530000 540540000 107680000 199740000 85696000 26496000 106110000 3701 1107 3249 22419;22420;22421;22422;22423;22424;22425;22426 14649;14650;14651;14652 14652 3 HNEIFFTVQR Deamidation (NQ) 1290.6357 0.63568542 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 1 2 1 1 50.258 50.574 2 2.2092E-05 18172 20181213_JW_Orientia_Karp_1_2 163.88 81.451 230900000 49950000 78529000 34338000 29376000 5086000 21594000 141560 11884000 3702 1107 3249 22427;22428;22429;22430;22431;22432;22433;22434;22435;22436;22437;22438;22439 14653;14654;14655;14656;14657 14655 469 5 HNFQSGSSIK Unmodified 1103.536 0.53597137 1455 Karp_02592 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 19.646 19.876 2 0.00064178 3812 20181213_JW_Orientia_Karp_1_2 131.52 52.746 9473000 2427300 1627600 3807700 1068400 542050 0 0 0 3703 1455 3250 22440;22441;22442;22443;22444 14658;14659;14660;14661;14662 14659 5 HNLAEAYCNK Unmodified 1218.5452 0.54515585 1340 Karp_01512 yes yes 0 0 0 0 By MS/MS 1 25.637 25.637 2 0.022613 6469 20181213_JW_Orientia_Karp_1_1 99.013 44.031 1106000 1106000 0 0 0 0 0 0 0 3704 1340 3251 22445 14663 14663 1 HNLLASK Unmodified 781.44464 0.44463717 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 19.318 19.551 2 0.022372 3904 20181213_JW_Orientia_Karp_1_1 99.375 3.5819 4594100 3913100 0 0 266890 0 0 414090 0 3705 506 3252 22446;22447;22448 14664 14664 1 HNPSYPEAYYNK Unmodified 1481.6575 0.65754307 1448 Karp_02495 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 31.146 31.49 2 0.0017146 8981 20181213_JW_Orientia_Karp_1_1 125.23 98.337 33927000 8888100 6360900 4484400 0 0 714510 3589200 9889500 3706 1448 3253 22449;22450;22451;22452;22453;22454;22455 14665;14666;14667;14668;14669 14665 5 HNPTQMDSLSQETK Oxidation (M) 1630.7257 0.72569899 1266 Karp_01074 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 23.012 23.393 2;3 1.3402E-05 4650 20181213_JW_Orientia_Karp_2_1 173.59 139.84 52845000 0 13661000 4839800 8869200 9176300 3450800 7784900 5062700 3707 1266 3254 22456;22457;22458;22459;22460;22461;22462;22463;22464;22465;22466;22467;22468;22469 14670;14671;14672;14673;14674;14675;14676 14673 828 7 HNPTQMDSLSQETK Unmodified 1614.7308 0.73078437 1266 Karp_01074 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 30.376 30.702 3 0.0008558 7818 20181213_JW_Orientia_Karp_3_1 122.78 86.498 25170000 11100000 0 9952800 0 1555000 0 2562400 0 3708 1266 3254 22470;22471;22472;22473 14677;14678 14678 2 HNQLPLVIEFTEQTAPK Unmodified 1964.0367 0.036726442 171 B4DNL5;A0A024R8S5;P07237;F5H8J2;B4DLN6;H7BZ94;B4DUA5;I3L398;I3NI03;I3L312;I3L4M2 P4HB Protein disulfide-isomerase yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.788 61.048 3 0.00041831 23406 20181213_JW_Orientia_Karp_2_2 117.48 71.601 84693000 26309000 9451400 22054000 0 10199000 7942600 0 8737400 3709 171 3255 22474;22475;22476;22477;22478;22479 14679;14680;14681;14682;14683 14681 4 HPDASVNFSEFSK Unmodified 1463.6681 0.66810776 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;Q9NYD7;Q75MM1 HMGB1;HMG1;WUGSC:H_NH0244E06.1 High mobility group protein B1 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 43.201 43.482 2;3 0.010903 14859 20181213_JW_Orientia_Karp_1_2 105.65 43.245 68712000 16060000 18570000 17438000 6770100 1590300 5052400 3230300 0 3710 264 3256 22480;22481;22482;22483;22484;22485;22486;22487;22488;22489;22490;22491;22492 14684;14685 14684 2 HPDSHQLFIGNLPHEVDK Unmodified 2082.0283 0.028287021 1790 Q6FI03;Q5U0Q1;Q53HH4;Q13283;B7Z8K4;Q6ZP53;Q32P45 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 42.916 43.166 4 0.011391 14490 20181213_JW_Orientia_Karp_1_3 77.027 42.176 51337000 18303000 19026000 11552000 2456000 0 0 0 0 3711 1790 3257 22493;22494;22495;22496 14686 14686 1 HPELNISEEGITK Unmodified 1465.7413 0.7412727 397 B4DNQ1;E9PKP7;A8K962;P17480-2;P17480;B4DLB0;O00164;Q05BZ1 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 40.969 41.319 2 0.020185 13628 20181213_JW_Orientia_Karp_1_2 86.114 31.331 11516000 0 11516000 0 0 0 0 0 0 3712 397 3258 22497;22498 14687;14688 14687 2 HPESNTAGMDIFAK Oxidation (M) 1532.6929 0.6929423 1863 Q6FIC5;Q9Y696;B4DWC4;Q9NVF8;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 1 1 33.369 33.618 3 0.00085577 9622 20181213_JW_Orientia_Karp_1_3 134.06 54.172 61908000 25319000 0 33370000 3219500 0 0 0 0 3713 1863 3259 22499;22500;22501 14689;14690 14690 1475 2 HPESNTAGMDIFAK Unmodified 1516.698 0.69802768 1863 Q6FIC5;Q9Y696;B4DWC4;Q9NVF8;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1 1 42.226 42.533 2;3 0.031092 14253 20181213_JW_Orientia_Karp_1_2 77.387 37.329 62141000 17639000 21685000 11836000 3809700 0 819380 5281400 1070100 3714 1863 3259 22502;22503;22504;22505;22506;22507;22508;22509;22510 14691;14692;14693 14692 3 HPEVLAAPGGSAK Unmodified 1232.6513 0.65133548 1316 Karp_01272 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 2 1 1 1 1 1 29.132 29.472 2 0.0050976 7661 20181213_JW_Orientia_Karp_1_2 110.54 70.272 48691000 10695000 12843000 13051000 1744100 1105700 1087900 6021800 2143600 3715 1316 3260 22511;22512;22513;22514;22515;22516;22517;22518;22519 14694;14695;14696 14694 3 HPGSFDVVHVK Unmodified 1220.6302 0.63020611 442 Q96IR1;Q53HV1;B2R491;P62701;C9JEH7;A4FU11;Q496E4;P22090 RPS4X;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1 yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 32.377 32.735 3 0.0024877 8132 20181213_JW_Orientia_Karp_3_2 99.343 75.492 32647000 12609000 6833200 5872400 977940 1986800 656640 2480200 1231300 3716 442 3261 22520;22521;22522;22523;22524;22525;22526;22527 14697 14697 1 HPPAPAEPSSDLASK Unmodified 1502.7365 0.73652168 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 30.959 31.058 2 0.015066 8848 20181213_JW_Orientia_Karp_1_1 89.266 46.183 5567800 3481000 0 2086800 0 0 0 0 0 3717 279 3262 22528;22529;22530 14698;14699 14698 2 HPTWPQK Unmodified 892.45554 0.45553621 835 D3DSM4;D3DSM5;P39060-2;P39060-1;P39060;H7BXV5;H7C457;Q8NG19 COL18A1 Collagen alpha-1(XVIII) chain;Endostatin yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 22.449 22.709 2 0.0064604 4636 20181213_JW_Orientia_Karp_3_1 158.38 89.981 63144000 17324000 27971000 0 6953300 0 3008300 7886900 0 3718 835 3263 22531;22532;22533;22534;22535 14700;14701;14702 14702 3 HPVTPWGK Unmodified 920.48684 0.48683634 1239 Karp_00906 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 29.827 30.21 2 0.0075032 6856 20181213_JW_Orientia_Karp_3_2 111.82 65.445 369960000 56037000 169880000 62285000 21843000 12038000 7931900 21568000 18384000 3719 1239 3264 22536;22537;22538;22539;22540;22541;22542;22543 14703;14704;14705;14706;14707;14708;14709 14709 7 HPYFYAPELLYYANK Unmodified 1887.9196 0.91957142 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 62.281 62.548 2;3 1.4421E-05 26577 20181213_JW_Orientia_Karp_1_3 218.94 180.32 291620000 68505000 8264800 51214000 10215000 72545000 62355000 0 18523000 + 3720 792 3265 22544;22545;22546;22547;22548;22549;22550;22551;22552;22553;22554;22555;22556 14710;14711;14712;14713;14714;14715;14716;14717;14718;14719 14712 10 HQEAVENLDIAIK Unmodified 1478.7729 0.77290718 1448 Karp_02495 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 45.681 45.974 2 0.0059504 16631 20181213_JW_Orientia_Karp_1_1 107.53 72.997 34871000 5756100 11012000 7667400 1740100 0 2225500 0 6469700 3721 1448 3266 22557;22558;22559;22560;22561;22562 14720;14721 14720 2 HQEGEIFDTEK Unmodified 1331.5994 0.59935949 226 Q8TBK5;Q8N5Z7;B2R4K7;A0A024RBK3;Q9HBB3;Q02878;B4DRX3 RPL6 60S ribosomal protein L6 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 32.568 32.751 2 0.0010596 9682 20181213_JW_Orientia_Karp_1_1 128.51 78.473 33321000 10503000 9741500 13076000 0 0 0 0 0 3722 226 3267 22563;22564;22565 14722;14723 14722 2 HQGGWTDGGSGGGGGYQDGGYR Unmodified 2124.8634 0.86340654 531 B4DT23;B4DY25;B3KTW4;I6L9E8;Q8NCA5-2;Q8NCA5 FAM98A Protein FAM98A yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 33.003 33.303 3 0.0043895 9914 20181213_JW_Orientia_Karp_1_1 104.52 80.954 14609000 4228400 5215200 4155000 0 0 0 1010200 0 3723 531 3268 22566;22567;22568;22569 14724;14725 14724 2 HQGNDTEIISK Unmodified 1240.6048 0.60477922 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 23.407 23.802 2 0.00050424 5269 20181213_JW_Orientia_Karp_1_2 141.1 93.521 7163000 0 1340100 2463000 799960 790720 370470 808220 590530 3724 1396 3269 22570;22571;22572;22573;22574;22575;22576 14726;14727;14728;14729 14726 4 HQGVMVGMGQK 2 Oxidation (M) 1202.5536 0.55361205 1717;1743;351;1836 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;G5E9R0;E7EVS6;C9JZR7;C9JUM1;C9JTX5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;A1E282;Q562R1 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;ACTBL2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 4 3 2 5 3 4 18 18.325 2;3 0.00075422 2600 20181213_JW_Orientia_Karp_2_3 122.96 70.025 1063600000 71112000 136960000 90826000 35627000 4108400 7285900 65406000 652230000 3725 351;1717;1743;1836 3270 22577;22578;22579;22580;22581;22582;22583;22584;22585;22586;22587;22588;22589;22590;22591;22592;22593;22594;22595;22596;22597;22598;22599;22600;22601;22602;22603;22604;22605;22606;22607;22608 14730;14731;14732;14733;14734;14735;14736;14737;14738;14739;14740;14741;14742;14743;14744;14745;14746;14747 14742 241;242 17 HQGVMVGMGQK Oxidation (M) 1186.5587 0.55869743 1717;1743;351;1836 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;G5E9R0;E7EVS6;C9JZR7;C9JUM1;C9JTX5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;A1E282;Q562R1 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;ACTBL2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 7 5 4 6 6 4 21.634 21.968 2;3 0.0010356 4917 20181213_JW_Orientia_Karp_3_1 125.82 82.048 1068800000 98584000 506850000 175590000 74687000 52276000 34914000 77480000 48394000 3726 351;1717;1743;1836 3270 22609;22610;22611;22612;22613;22614;22615;22616;22617;22618;22619;22620;22621;22622;22623;22624;22625;22626;22627;22628;22629;22630;22631;22632;22633;22634;22635;22636;22637;22638;22639;22640;22641;22642;22643;22644;22645;22646;22647;22648;22649;22650 14748;14749;14750;14751;14752;14753;14754;14755;14756;14757;14758;14759;14760;14761;14762;14763;14764;14765;14766;14767;14768;14769 14766 241;242 22 HQGVMVGMGQK Unmodified 1170.5638 0.5637828 1717;1743;351;1836 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;Q5T8M7;B3KUD3;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;G5E9R0;E7EVS6;C9JZR7;C9JUM1;C9JTX5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;A1E282;Q562R1 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;ACTBL2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 27.251 27.594 2;3 8.8697E-05 6357 20181213_JW_Orientia_Karp_2_1 172.25 86.579 294250000 112560000 75316000 77331000 5583000 7137700 2375800 9958600 3989500 3727 351;1717;1743;1836 3270 22651;22652;22653;22654;22655;22656;22657;22658;22659;22660;22661;22662 14770;14771;14772;14773;14774;14775;14776;14777;14778;14779 14775 10 HQILEQAVEDYAETVHQLSK Unmodified 2337.1601 0.16008906 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 59.743 60.159 3 1.0176E-05 25528 20181213_JW_Orientia_Karp_1_2 141.74 119.11 22544000 0 16176000 0 0 4725500 0 833300 808680 3728 506 3271 22663;22664;22665;22666 14780 14780 1 HQNVQLPR Unmodified 990.53591 0.5359118 1633 P26599;P26599-2;P26599-3;A6NLN1;K7EK45 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 24.658 25.005 2 0.0042048 4644 20181213_JW_Orientia_Karp_3_2 138.24 88.218 37426000 5664300 16963000 5650100 0 2132000 1193300 3664700 2158200 3729 1633 3272 22667;22668;22669;22670;22671;22672;22673 14781;14782;14783;14784;14785;14786 14786 6 HQPLGNNIVDAIIER Unmodified 1687.9006 0.90056731 1427 Karp_02373 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 57.017 57.218 3 0.0026139 24033 20181213_JW_Orientia_Karp_1_1 101.72 38.832 24214000 9855700 3994600 0 0 10364000 0 0 0 3730 1427 3273 22674;22675;22676 14787 14787 1 HQPTAIIAK Unmodified 977.56581 0.56581494 527 B3KSI4;V9HWD9;Q53EM5;P29401;P29401-2;B4DVU1;B4E022;E9PFF2 HEL107;TKT Transketolase yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 24.624 24.969 2 0.010479 5810 20181213_JW_Orientia_Karp_1_2 93.143 51.916 38941000 3681200 12278000 3309600 5523500 4441900 2549500 3898400 3258900 3731 527 3274 22677;22678;22679;22680;22681;22682;22683;22684 14788 14788 1 HQTHGSLLR Unmodified 1047.5574 0.55737552 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 14.583 14.853 2 0.0044398 2347 20181213_JW_Orientia_Karp_1_3 101.25 32.831 4320000 1660000 0 1340900 373990 0 294160 650980 0 3732 195 3275 22685;22686;22687;22688;22689 14789;14790;14791;14792 14790 4 HQTIISK Unmodified 825.47085 0.47085192 1283 Karp_01146 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 14.972 15.41 2 0.00017299 2832 20181213_JW_Orientia_Karp_3_1 195.81 38.605 39561000 0 12534000 15435000 4245800 2882400 1768500 2407100 288040 3733 1283 3276 22690;22691;22692;22693;22694;22695;22696 14793;14794;14795;14796;14797;14798;14799 14799 7 HQTQSHNYLSK Unmodified 1341.6426 0.64256171 1294 Karp_01183 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 1 13.845 14.246 3 0.00096772 2326 20181213_JW_Orientia_Karp_1_3 163.46 122.38 102470000 22418000 14355000 11464000 5704500 6930800 4614200 4841400 32145000 3734 1294 3277 22697;22698;22699;22700;22701;22702;22703;22704;22705 14800;14801;14802;14803;14804;14805;14806 14802 7 HQTVPQNTGGK Unmodified 1165.584 0.5839842 578 B4DI57;Q53H26;Q06AH7;P02787;B4E1B2;B4DHZ6 TF Serotransferrin yes no 0 0 0 0 By MS/MS By matching 1 1 15.115 15.239 2 0.0040826 2588 20181213_JW_Orientia_Karp_1_1 109.16 58.453 5171100 4710200 0 0 460860 0 0 0 0 3735 578 3278 22706;22707 14807;14808 14808 2 HQVHGPLLR Unmodified 1055.5988 0.5988464 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 22.019 22.364 3 0.013366 4972 20181213_JW_Orientia_Karp_1_1 74.173 34.236 120880000 43365000 20674000 21576000 8581900 6072900 6110400 7315000 7186500 3736 195 3279 22708;22709;22710;22711;22712;22713;22714;22715 14809;14810;14811;14812 14809 4 HRASGQVMALKMNTLSSNR 2 Oxidation (M);2 Deamidation (NQ) 2134.0259 0.025920535 632 B4DRH9;B4DYL6;Q96S53-3;Q96S53-2;Q96S53 TESK2 Dual specificity testis-specific protein kinase 2 yes no 0 2 2 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 41.383 41.699 3 0.018275 13759 20181213_JW_Orientia_Karp_1_2 62.438 30.346 115500000 22910000 26391000 10164000 11079000 0 13614000 31341000 0 3737 632 3280 22716;22717;22718;22719;22720;22721 14813 14813 219;1548 392;393 1 HRDFVAEPMGEK Oxidation (M) 1430.6612 0.66124824 112 A0A024R5H0;O75531;E9PJJ8 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 1 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 23.701 24.081 3 0.024948 5284 20181213_JW_Orientia_Karp_1_3 91.202 48.727 92438000 0 40143000 15068000 4061300 4023200 3455200 17637000 8050000 3738 112 3281 22722;22723;22724;22725;22726;22727;22728;22729 14814;14815;14816 14815 106 3 HRDFVAEPMGEKPVGSLAGIGEVLGK Unmodified 2692.4007 0.40067045 112 A0A024R5H0;O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 55.058 55.4 4 0.0014684 22396 20181213_JW_Orientia_Karp_1_2 76.237 54.867 80872000 40062000 19559000 17497000 1522400 0 0 0 2231500 3739 112 3282 22730;22731;22732;22733;22734 14817;14818;14819;14820 14818 3 HRDFVAEPMGEKPVGSLAGIGEVLGK Oxidation (M) 2708.3956 0.39558507 112 A0A024R5H0;O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 1 2 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.536 51.881 4 0.0047386 17886 20181213_JW_Orientia_Karp_3_1 65.881 37.376 252380000 23719000 43866000 51610000 22456000 37478000 15310000 53390000 4553200 3740 112 3282 22735;22736;22737;22738;22739;22740;22741;22742 14821;14822;14823 14822 106 3 HRDYETATLSDIK Unmodified 1547.758 0.7579854 1509 O43707;O43707-2;Q96BG6;B4E337 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 33.357 33.707 3 2.2557E-07 9367 20181213_JW_Orientia_Karp_3_1 187.74 112.75 239850000 89551000 49110000 74385000 11908000 0 0 14893000 0 3741 1509 3283 22743;22744;22745;22746;22747 14824;14825;14826;14827;14828 14828 5 HRPELIDYGK Unmodified 1226.6408 0.6407708 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;Q86TX4;G3V2N5;B4DRP5;G3V2W4;G3V2X9 ACTN1 Alpha-actinin-1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 29.002 29.362 3 0.0017905 7543 20181213_JW_Orientia_Karp_1_3 116.84 58.591 72109000 0 39736000 20447000 0 3447800 2541000 5936800 0 3742 133 3284 22748;22749;22750;22751;22752;22753 14829;14830;14831;14832;14833 14831 5 HRPELIEYDK Unmodified 1298.6619 0.66190017 1509 O43707;B4E337;B4DSX0;K7EJH8 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 28.916 29.218 3 0.012608 7583 20181213_JW_Orientia_Karp_1_2 103.21 25.826 77401000 40657000 19298000 11784000 0 1533700 0 0 4128400 3743 1509 3285 22754;22755;22756;22757;22758 14834;14835;14836 14834 3 HSAESQILK Unmodified 1011.5349 0.53490874 1665 Q6FH49;P40261 NNMT Nicotinamide N-methyltransferase yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 22.207 22.472 2 0.0021502 4677 20181213_JW_Orientia_Karp_1_3 117.81 13.754 10037000 1639600 5131700 1615700 441150 320690 182450 705710 0 3744 1665 3286 22759;22760;22761;22762;22763;22764;22765 14837;14838 14838 2 HSEAFEALQQK Unmodified 1286.6255 0.62551466 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 32.631 32.993 2 1.5872E-09 9805 20181213_JW_Orientia_Karp_1_1 205.59 141.17 71495000 21858000 20637000 20502000 0 0 0 6183500 2314200 3745 224 3287 22766;22767;22768;22769;22770 14839;14840;14841;14842 14839 3 HSGFPGGIK Unmodified 898.4661 0.4661009 1413 Karp_02239 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 27.423 27.839 2 0.00075335 5898 20181213_JW_Orientia_Karp_2_2 150.05 86.747 525200000 185640000 96798000 159990000 0 11484000 17974000 30696000 22616000 3746 1413 3288 22771;22772;22773;22774;22775;22776;22777;22778 14843;14844;14845;14846;14847;14848 14845 6 HSGNITFDEIVNIAR Unmodified 1684.8533 0.85328277 1647 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 2 2 1 59.01 59.266 2;3 3.8149E-05 24870 20181213_JW_Orientia_Karp_1_2 188.63 134.43 151390000 51731000 24391000 39446000 4806500 12781000 17996000 237170 0 3747 1647 3289 22779;22780;22781;22782;22783;22784;22785;22786;22787;22788;22789;22790;22791;22792;22793;22794 14849;14850;14851;14852;14853;14854;14855;14856 14850 8 HSIGYSIR Unmodified 931.48756 0.48756462 640 B4DU18;Q59EA3;P33151;B4DTP0 CDH5 Cadherin-5 yes no 0 0 0 0 By MS/MS 1 28.276 28.626 2 0.013346 7298 20181213_JW_Orientia_Karp_1_2 98.418 39.813 1455400 0 1455400 0 0 0 0 0 0 3748 640 3290 22795 14857 14857 1 HSIPDEVASK Unmodified 1081.5404 0.54038805 1246 Karp_00917 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 26.357 26.672 2 0.0031827 5374 20181213_JW_Orientia_Karp_3_2 109.44 71.163 111690000 53820000 0 40553000 0 9043600 0 0 8277700 3749 1246 3291 22796;22797;22798;22799 14858;14859 14859 2 HSLASSEYPVR Unmodified 1244.6149 0.61494998 1698 V9HWE7;Q6ZP37;P51570;P51570-2;C8CHJ6;Q71UH7 HEL-S-19;GALK1;GALK Galactokinase yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 29.569 29.923 2 0.0033297 8347 20181213_JW_Orientia_Karp_1_1 112.3 81.726 4331100 2389500 1451000 0 0 0 0 0 490610 3750 1698 3292 22800;22801;22802 14860;14861 14860 2 HSLPDIQLLQK Unmodified 1290.7296 0.7295858 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 3 49.529 49.83 2 0.00052573 17384 20181213_JW_Orientia_Karp_2_2 140.17 66.004 106370000 23509000 26330000 24070000 10212000 8774100 11192000 0 2284000 3751 1789 3293 22803;22804;22805;22806;22807;22808;22809;22810;22811 14862;14863;14864;14865 14862 4 HSQAVEELAEQLEQTK Unmodified 1838.901 0.90102082 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 50.901 51.246 2;3 3.9827E-115 19571 20181213_JW_Orientia_Karp_1_2 332.06 279.05 1379400000 356170000 411800000 185870000 94022000 77342000 75844000 174160000 4208000 3752 47 3294 22812;22813;22814;22815;22816;22817;22818;22819;22820;22821;22822;22823;22824;22825;22826;22827 14866;14867;14868;14869;14870;14871;14872 14867 6 HSQAVEELAEQLEQTKR Unmodified 1995.0021 0.0021318501 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS 1 45.697 46.047 3 0.001717 16287 20181213_JW_Orientia_Karp_1_2 129.36 97.033 9807000 0 9807000 0 0 0 0 0 0 3753 47 3295 22828 14873 14873 1 HSQFIGYPITLFVEK Unmodified 1777.9403 0.94030686 1057 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;Q86U12;G3V2J8;Q58FG0 EL52;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 66.263 66.453 3 0.0032003 29676 20181213_JW_Orientia_Karp_1_1 99.238 75.84 75293000 38488000 7041600 23226000 0 0 0 0 6537100 3754 1057 3296 22829;22830;22831;22832;22833 14874;14875;14876;14877;14878 14874 5 HSQFLGYPITLYLEK Unmodified 1807.9509 0.95087155 1838 Q58FF8 HSP90AB2P Putative heat shock protein HSP 90-beta 2 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.731 63.932 3 2.4329E-06 27844 20181213_JW_Orientia_Karp_1_2 165.89 0 135820000 83844000 8863400 22975000 157950 10034000 7450600 0 2494300 3755 1838 3297 22834;22835;22836;22837;22838;22839;22840 14879;14880;14881;14882;14883;14884;14885;14886 14880 8 HSQIIHDSTLEIEGNITNWK Unmodified 2334.1604 0.16042341 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 51.934 52.238 3;4 9.6956E-12 18674 20181213_JW_Orientia_Karp_2_2 166.21 102.75 480500000 114220000 74941000 74526000 80371000 52223000 64774000 16597000 2848000 3756 1396 3298 22841;22842;22843;22844;22845;22846;22847;22848;22849;22850;22851;22852;22853;22854 14887;14888;14889;14890;14891;14892;14893;14894;14895;14896;14897 14893 11 HSQPATPTPLQSR Unmodified 1418.7266 0.72662569 1984 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 28.629 28.895 3 0.034946 7216 20181213_JW_Orientia_Karp_1_3 65.495 28.824 11293000 0 6700100 4272900 0 0 319620 0 0 3757 1984 3299 22855;22856;22857 14898 14898 1 HSTIFENLANK Unmodified 1272.6463 0.64625011 578 B4DI57;Q53H26;Q06AH7;P02787;B4E1B2;C9JVG0;A0PJA6 TF Serotransferrin yes no 0 0 0 0 By MS/MS 1 40.075 40.075 2 0.003086 13425 20181213_JW_Orientia_Karp_1_1 153.1 113.48 0 0 0 0 0 0 0 0 0 3758 578 3300 22858 14899 14899 1 HSVGVVIGR Unmodified 922.53485 0.53484916 1930;645 B4DV73;Q92945;M0R0I5 KHSRP Far upstream element-binding protein 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 29.548 29.875 2 0.0043847 7868 20181213_JW_Orientia_Karp_1_2 134.81 82.174 43210000 12887000 0 19297000 3284400 1691000 3610000 0 2440700 3759 645;1930 3301 22859;22860;22861;22862;22863;22864;22865 14900;14901;14902;14903 14901 4 HSYFNTSGNESVDNSSNK Unmodified 1985.8351 0.8351261 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 30.342 30.745 2;3 7.9769E-10 7196 20181213_JW_Orientia_Karp_3_2 186.94 145.85 112210000 44278000 0 45137000 0 6946300 0 8041000 7803300 3760 1193 3302 22866;22867;22868;22869;22870;22871;22872;22873;22874;22875 14904;14905;14906;14907;14908;14909 14908 5 HSYFNTSGNESVDNSSNK Deamidation (NQ) 1986.8191 0.81914169 1193 Karp_00798 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 3 3 3 1 1 2 1 32.888 33.199 3 0.00020088 9878 20181213_JW_Orientia_Karp_1_1 133.94 101.23 88591000 30507000 26564000 25187000 536250 0 1213100 4219200 365090 3761 1193 3302 22876;22877;22878;22879;22880;22881;22882;22883;22884;22885;22886;22887;22888;22889 14910;14911;14912;14913;14914 14911 607 5 HTAAPTDPADGPV Unmodified 1247.5782 0.57823012 6 A0A024QYW3;Q04941 PLP2 Proteolipid protein 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 36.965 37.256 2 0.0042011 11359 20181213_JW_Orientia_Karp_1_3 113.71 62.615 33748000 13844000 9749300 5313400 0 1376600 0 3464000 0 3762 6 3303 22890;22891;22892;22893;22894 14915;14916;14917 14916 3 HTAIGINFQDYEHYK Unmodified 1834.8638 0.86384745 1129 Karp_00368 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.266 46.559 3 1.9184E-13 16258 20181213_JW_Orientia_Karp_1_3 198.16 157.69 100560000 5934200 35280000 35483000 8203700 0 7022200 0 8636300 3763 1129 3304 22895;22896;22897;22898;22899;22900 14918;14919;14920;14921;14922 14919 5 HTAMVSWGGVSIPNSPFR Unmodified 1941.952 0.95195096 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 61.39 61.654 3 0.016318 26063 20181213_JW_Orientia_Karp_1_3 65.652 15.55 33277000 11807000 6179600 13981000 0 0 0 0 1309300 3764 1615 3305 22901;22902;22903;22904 14923;14924;14925 14925 3 HTAMVSWGGVSIPNSPFR Oxidation (M) 1957.9469 0.94686558 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 57.883 58.253 3 0.025762 21953 20181213_JW_Orientia_Karp_2_2 71.286 41.945 11962000 0 0 0 0 4780700 4763500 0 2417300 3765 1615 3305 22905;22906;22907 14926 14926 1239 1 HTFSGVASVESSSGEAFHVGK Unmodified 2118.997 0.99704647 797 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 5 5 6 5 1 1 5 1 43.248 43.564 3;4 3.1352E-16 14699 20181213_JW_Orientia_Karp_1_3 187.04 146.34 2796700000 570540000 933950000 366900000 273440000 6039800 10395000 635430000 0 + 3766 797 3306 22908;22909;22910;22911;22912;22913;22914;22915;22916;22917;22918;22919;22920;22921;22922;22923;22924;22925;22926;22927;22928;22929;22930;22931;22932;22933;22934;22935;22936 14927;14928;14929;14930;14931;14932;14933;14934;14935;14936;14937;14938;14939;14940;14941;14942 14935 14 HTGPGILSMANAGPNTNGSQFFICTAK Oxidation (M) 2806.3167 0.31668283 356;1888 V9HWF5;A8K486;P62937;B2RE56;F8WE65;C9J5S7;P62937-2;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 0 1 0 By MS/MS 1 55.706 55.706 3 0.0010629 22967 20181213_JW_Orientia_Karp_1_1 75.005 48.505 15241000 15241000 0 0 0 0 0 0 0 3767 356;1888 3307 22937 14943 14943 247 1 HTGPGILSMANAGPNTNGSQFFICTAK Oxidation (M);Deamidation (NQ) 2807.3007 0.30069841 356;1888 V9HWF5;A8K486;P62937;B2RE56;F8WE65;C9J5S7;P62937-2;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 1 1 0 By MS/MS 1 58.911 58.911 3 0.024973 24985 20181213_JW_Orientia_Karp_1_1 48.532 18.288 8723300 8723300 0 0 0 0 0 0 0 3768 356;1888 3307 22938 14944 14944 143 247 1 HTGPGILSMANAGPNTNGSQFFICTAK Unmodified 2790.3218 0.3217682 356;1888 V9HWF5;A8K486;P62937;B2RE56;F8WE65;C9J5S7;P62937-2;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 0 0 0 By MS/MS 1 61.076 61.076 3 5.4097E-26 26339 20181213_JW_Orientia_Karp_1_1 192.99 156.69 161170000 161170000 0 0 0 0 0 0 0 3769 356;1888 3307 22939 14945 14945 1 HTGPNSPDTANDGFVR Unmodified 1683.7601 0.76011066 888 E9PCY7;G8JLB6;P31943;E5RGV0;D6RIU0;D6RBM0;P55795;E5RGH4;E7EQJ0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;H0YAQ2 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 32.038 32.388 3 0.00030785 9008 20181213_JW_Orientia_Karp_1_3 130.21 96.114 55298000 11221000 29419000 8408100 2179000 0 0 4070200 0 3770 888 3308 22940;22941;22942;22943;22944 14946;14947;14948 14946 3 HTIAVVWGGVNIPHSPYR Unmodified 2002.0537 0.053713911 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 52.315 52.565 3 5.4254E-05 20674 20181213_JW_Orientia_Karp_1_2 167.35 117.87 145340000 67313000 37365000 26667000 4517600 3733900 5746900 0 0 3771 1520 3309 22945;22946;22947;22948;22949;22950 14949;14950 14950 2 HTLASITK Unmodified 869.49707 0.49706667 1154 Karp_00560 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 22.971 23.351 2 0.021638 3910 20181213_JW_Orientia_Karp_3_2 87.323 24.608 21320000 0 7978600 4153500 2341200 2196900 1209300 2252200 1188700 3772 1154 3310 22951;22952;22953;22954;22955;22956;22957 14951;14952 14952 2 HTLATIDEEGHVDIDYR Unmodified 1982.9334 0.93338358 1427 Karp_02373 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.338 46.658 3 1.0043E-06 16281 20181213_JW_Orientia_Karp_1_3 153.41 127.82 212920000 35216000 44433000 49153000 30498000 18500000 12415000 1017300 21690000 3773 1427 3311 22958;22959;22960;22961;22962;22963;22964;22965 14953;14954;14955;14956;14957;14958;14959 14955 7 HTLENILAK Unmodified 1037.5869 0.58694431 1403 Karp_02211 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.337 37.67 2 0.0024517 12171 20181213_JW_Orientia_Karp_1_1 116.37 61.76 325680000 72545000 125640000 59263000 21598000 9099800 0 37533000 0 3774 1403 3312 22966;22967;22968;22969;22970;22971 14960;14961;14962;14963;14964;14965 14960 6 HTLNQIDSVK Unmodified 1153.6091 0.60913632 797 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 3 2 1 2 27.682 28.013 2 1.485E-08 6668 20181213_JW_Orientia_Karp_2_1 200.71 90.588 2608900000 274780000 377170000 797710000 238480000 186800000 128370000 436210000 169400000 + 3775 797 3313 22972;22973;22974;22975;22976;22977;22978;22979;22980;22981;22982;22983;22984;22985;22986;22987;22988;22989 14966;14967;14968;14969;14970;14971;14972;14973;14974;14975 14970 10 HTLNQIDSVK Deamidation (NQ) 1154.5932 0.5931519 797 CON__P12763 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 3 2 2 1 31.801 32.145 2 2.2834E-17 8848 20181213_JW_Orientia_Karp_2_3 232.72 163.09 784640000 137100000 164270000 225680000 63540000 34693000 54022000 67082000 38247000 + 3776 797 3313 22990;22991;22992;22993;22994;22995;22996;22997;22998;22999;23000;23001;23002;23003;23004;23005;23006 14976;14977;14978;14979;14980;14981;14982;14983;14984;14985;14986;14987;14988;14989;14990;14991;14992;14993 14989 274 18 HTNYTMEHIR Oxidation (M) 1316.5932 0.59316868 1509;133 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144;B7Z2N5;B7Z4P6;Q59FD9;B7Z4K1;B7Z4P8;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;A1L0V1;H7C5W8;H0YJW3;H0YJ11;P35609-2;P35609;Q5ZEZ4 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 17.051 17.422 3 0.0022702 3636 20181213_JW_Orientia_Karp_1_1 110.84 85.77 74877000 29246000 12408000 12877000 3023900 1202500 6289300 4808300 5022500 3777 1509;133 3314 23007;23008;23009;23010;23011;23012;23013;23014 14994;14995;14996;14997;14998;14999 14994 114 6 HTNYTMEHIR Unmodified 1300.5983 0.59825406 1509;133 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144;B7Z2N5;B7Z4P6;Q59FD9;B7Z4K1;B7Z4P8;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;A1L0V1;H7C5W8;H0YJW3;H0YJ11;P35609-2;P35609;Q5ZEZ4 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 23.043 23.375 3 3.5348E-05 4983 20181213_JW_Orientia_Karp_1_3 147.28 93.598 54338000 11974000 22337000 7980000 2754000 1636900 1385000 3709400 2561700 3778 1509;133 3314 23015;23016;23017;23018;23019;23020;23021;23022 15000;15001;15002;15003;15004;15005;15006 15002 7 HTPFFQNYR Unmodified 1208.5727 0.57269123 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 36.968 37.151 3 0.00262 11401 20181213_JW_Orientia_Karp_1_2 99.802 57.204 30847000 16408000 10262000 4176600 0 0 0 0 0 3779 1176;1244 3315 23023;23024;23025;23026 15007;15008;15009 15008 3 HTQLAEIVIEK Unmodified 1279.7136 0.71360139 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.719 43.012 2 1.0833E-12 15012 20181213_JW_Orientia_Karp_1_1 211.37 152.78 316320000 74883000 120800000 67971000 9733200 14827000 7816900 20292000 0 3780 1333 3316 23027;23028;23029;23030;23031;23032;23033;23034 15010;15011;15012;15013;15014;15015;15016;15017 15010 8 HTSVQTTSSGSGPFTDVR Unmodified 1862.8759 0.8758687 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 35.123 35.496 3 0.00012028 10407 20181213_JW_Orientia_Karp_1_3 139.12 105.5 385420000 151110000 91449000 73575000 5710400 19863000 0 28335000 15378000 3781 85 3317 23035;23036;23037;23038;23039;23040;23041 15018;15019;15020;15021;15022;15023;15024 15020 6 HVADLIK Unmodified 794.46504 0.46503826 1276 Karp_01108 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 29.343 29.713 2 0.017184 7238 20181213_JW_Orientia_Karp_2_1 107.43 35.409 238000000 59132000 34799000 62408000 39093000 8119000 6865100 19882000 7703100 3782 1276 3318 23042;23043;23044;23045;23046;23047;23048;23049 15025;15026;15027;15028;15029;15030;15031;15032 15028 8 HVEDLLTK Unmodified 953.5182 0.51819605 1589 P12270;Q58F23;Q504U6;Q15624;A0PJC9 TPR Nucleoprotein TPR yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 33.63 33.905 2 0.0075032 9043 20181213_JW_Orientia_Karp_2_1 111.82 47.551 14586000 4546000 3397600 5690000 952590 0 0 0 0 3783 1589 3319 23050;23051;23052;23053 15033 15033 1 HVGNQQYNVTYVVK Unmodified 1647.8369 0.83690442 1520 O75369-2;O75369-9;O75369;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 2 2 1 1 37.481 37.74 2;3 0.004219 11841 20181213_JW_Orientia_Karp_1_2 118.61 71.811 28497000 12436000 7286100 7149700 0 0 0 1624900 0 3784 1520 3320 23054;23055;23056;23057;23058;23059 15034;15035 15035 2 HVIGLQMGSNR Unmodified 1210.6241 0.62407488 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9 TAGLN Transgelin yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 34.653 35.016 2 0.042484 10389 20181213_JW_Orientia_Karp_1_2 72.643 40.709 12448000 0 2965400 6470700 0 1100300 0 1911100 0 3785 1761 3321 23060;23061;23062;23063 15036 15036 1 HVIPMNPNTDDLFK Oxidation (M) 1655.7977 0.79774172 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;U3KQI3 PLS3 Plastin-3 yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 47.076 47.352 3 0.004028 16782 20181213_JW_Orientia_Karp_1_3 109.16 62.279 53844000 14309000 14347000 13276000 4882600 2609800 0 0 4418900 3786 623 3322 23064;23065;23066;23067;23068;23069 15037;15038;15039 15038 381 3 HVLTAGLSK Unmodified 924.53927 0.53926584 1196 Karp_00815 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 27.293 27.67 2 0.019012 7351 20181213_JW_Orientia_Karp_1_1 84.743 46.583 16732000 3773000 5967500 3088700 0 1551100 0 1421100 930620 3787 1196 3323 23070;23071;23072;23073;23074;23075 15040;15041;15042 15040 3 HVLVTLGEK Unmodified 994.58113 0.58113065 724 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660-2;P60660;G3V1Y7;Q6IBG5;F8VPF3;F8VZU9;F8W180;H0YI43;F8VXL3 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 34.671 35.034 2 0.00064972 9850 20181213_JW_Orientia_Karp_3_1 153.08 88.516 1004200000 245330000 301080000 228460000 1532900 81307000 0 146530000 0 3788 724 3324 23076;23077;23078;23079;23080;23081;23082;23083;23084;23085 15043;15044;15045;15046;15047;15048;15049 15048 7 HVNDTLLEVQEFER Unmodified 1727.8479 0.84786304 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.052 53.302 3 0.0026573 19272 20181213_JW_Orientia_Karp_2_1 156.6 111.67 285180000 88590000 61131000 62376000 24333000 16318000 32435000 0 0 3789 1169 3325 23086;23087;23088;23089;23090;23091 15050;15051;15052;15053;15054;15055 15053 6 HVNDTLLEVQEFER Deamidation (NQ) 1728.8319 0.83187862 1169 Karp_00623 yes yes 0 1 0 0 By MS/MS By matching By MS/MS 1 1 1 57.383 57.617 3 0.00071268 23528 20181213_JW_Orientia_Karp_1_3 143.38 80.578 22976000 0 0 12902000 0 5263500 4811100 0 0 3790 1169 3325 23092;23093;23094 15056;15057 15056 564 2 HVQFTEAK Unmodified 958.48723 0.48723027 1247 Karp_00919 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 20.611 20.969 2 9.0109E-05 3967 20181213_JW_Orientia_Karp_2_3 200.16 109.38 211280000 34304000 61747000 40170000 22936000 14548000 13924000 19506000 4148900 3791 1247 3326 23095;23096;23097;23098;23099;23100;23101;23102 15058;15059;15060;15061;15062;15063;15064;15065 15062 8 HVQGILR Unmodified 821.48717 0.48717069 414 Q49AN9;F5H013;P62308;A8MWD9;C9JVQ0 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 24.264 24.543 2 0.03362 5948 20181213_JW_Orientia_Karp_1_1 86.935 32.17 528070000 81396000 9308600 5169400 4240900 171380000 120690000 135890000 0 3792 414 3327 23103;23104;23105;23106;23107;23108;23109 15066 15066 1 HVTINDLSIGR Unmodified 1223.6622 0.66223452 1399 Karp_02188 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.655 43.015 2 3.752E-13 13788 20181213_JW_Orientia_Karp_2_1 220.82 145.9 382650000 0 176190000 130880000 20554000 19739000 0 35285000 0 3793 1399 3328 23110;23111;23112;23113;23114;23115;23116;23117 15067;15068;15069;15070;15071;15072;15073;15074;15075 15070 9 HVTINDLSIGR Deamidation (NQ) 1224.6463 0.64625011 1399 Karp_02188 yes yes 0 1 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 46.865 47.138 2 0.024562 15042 20181213_JW_Orientia_Karp_3_2 90.149 37.06 94761000 25018000 33152000 12215000 4710700 5533900 7485700 0 6645800 3794 1399 3328 23118;23119;23120;23121;23122;23123;23124 15076 15076 910 1 HVTLEDK Unmodified 840.43413 0.43413207 1421 Karp_02305 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 17.674 17.904 2 0.028854 3376 20181213_JW_Orientia_Karp_1_1 90.986 2.9568 7050100 2151000 2551900 1622900 379850 0 0 344420 0 3795 1421 3329 23125;23126;23127;23128;23129 15077 15077 1 HVTVNEGDVVK Unmodified 1195.6197 0.619701 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 27.938 28.238 2 0.00021089 7130 20181213_JW_Orientia_Karp_1_3 154.84 120.46 49891000 13266000 8570900 22946000 0 1311200 986450 2810100 0 3796 1169 3330 23130;23131;23132;23133;23134;23135 15078;15079;15080;15081;15082;15083;15084 15081 7 HVVFIAQR Unmodified 968.55558 0.55558461 703 B5MCP9;P62081 RPS7 40S ribosomal protein S7 yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 32.549 32.871 2 0.019342 8924 20181213_JW_Orientia_Karp_3_1 88.734 59.396 45486000 11598000 14197000 10964000 2365800 1969500 1330700 3061700 0 3797 703 3331 23136;23137;23138;23139;23140;23141;23142 15085 15085 1 HVVQSISTQQEK Unmodified 1382.7154 0.7153923 364 Q5QNZ2;Q53GB3;Q08ET0;A8K4W2;P24539 ATP5F1;hCG_39985 ATP synthase F(0) complex subunit B1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 23.079 23.412 2 2.7437E-23 5029 20181213_JW_Orientia_Karp_1_2 237.53 178.37 17654000 4757400 4864800 3791800 803130 927890 596060 1124300 788930 3798 364 3332 23143;23144;23145;23146;23147;23148;23149;23150 15086;15087;15088;15089;15090;15091 15087 6 HWPFMVVNDAGRPK Deamidation (NQ) 1653.8086 0.80858118 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;P11142-2;Q53HF2;E9PNE6;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 1 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 50.143 50.455 3 0.01686 19107 20181213_JW_Orientia_Karp_1_2 98.407 70.11 16847000 0 4218700 7739500 3523700 1365400 0 0 0 3799 1586 3333 23151;23152;23153;23154 15092;15093 15092 1059 2 HYALVDCPGHVDYIK Unmodified 1785.8508 0.85083993 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 42.528 42.795 3 0.0022111 14196 20181213_JW_Orientia_Karp_1_3 180.3 140.06 384060000 195700000 58350000 86772000 0 7849800 11867000 23517000 0 3800 1176;1244 3334 23155;23156;23157;23158;23159;23160 15094;15095;15096;15097;15098;15099 15096 6 HYASEEIK Unmodified 975.46616 0.46616048 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 19.737 19.961 2 0.029924 4026 20181213_JW_Orientia_Karp_1_1 82.671 25.494 2371700 706580 734840 808760 0 0 0 121470 0 3801 506 3335 23161;23162;23163;23164 15100 15100 1 HYCTVANPVSR Unmodified 1302.6139 0.61390412 1800 X5D7K9;X5DNU0;X5D2M8;Q14764;B4DP93;B4DDR2;X5D7S8;X5DP24;H3BUK7;H3BNF6;H3BRL2;H3BQK6;X5DP17;X5D7R7;H3BP76 MVP Major vault protein yes no 0 0 0 0 By MS/MS 1 29.075 29.273 2 0.015338 7508 20181213_JW_Orientia_Karp_1_3 106.4 56.864 0 0 0 0 0 0 0 0 0 3802 1800 3336 23165 15101 15101 1 HYDISQIK Unmodified 1002.5134 0.51344502 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 32.295 32.653 2 0.00012759 8050 20181213_JW_Orientia_Karp_2_2 195.81 85.477 1448800000 293190000 538600000 268690000 66350000 69154000 27435000 184850000 574510 3803 1178 3337 23166;23167;23168;23169;23170;23171;23172;23173 15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112;15113;15114;15115;15116 15110 15 HYEGSTVPEK Unmodified 1145.5353 0.53530267 511 H3BS21;Q6PEJ8;B3KP77;Q6NSB4;J3QLC9;J3QR68;H0Y300;P00738-2;P00738 HP Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain yes no 0 0 0 0 By MS/MS By matching 1 1 19.921 20.147 2 0.00025969 4090 20181213_JW_Orientia_Karp_1_1 143.04 67.825 4865800 4718600 0 0 0 0 0 147190 0 3804 511 3338 23174;23175 15117 15117 1 HYGYDSYSVSNSEK Unmodified 1634.6849 0.68488004 1867 Q6LAF9 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 32.429 32.866 3 0.015861 9230 20181213_JW_Orientia_Karp_1_2 70.563 4.6679 28080000 0 11936000 7817600 4761200 0 0 3564800 0 3805 1867 3339 23176;23177;23178;23179 15118 15118 1 HYGYNSYSVSNSEK Unmodified 1633.7009 0.70086445 77 B4DL49;A0A024R374;P07858;B4DMY4;B3KUJ8;A8K2H4 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 29.088 29.516 3 0.006164 8177 20181213_JW_Orientia_Karp_1_1 88.092 42.812 13202000 4929900 0 0 3842500 0 0 3997100 432100 3806 77 3340 23180;23181;23182;23183 15119 15119 1 HYLGLDDR Unmodified 987.47739 0.47739386 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By matching 1 1 34.37 34.696 2 0.019213 10650 20181213_JW_Orientia_Karp_1_1 88.942 14.815 42382000 39277000 0 0 0 0 0 3104900 0 3807 1428 3341 23184;23185 15120 15120 1 HYQINQQWER Unmodified 1400.6585 0.65854613 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 33.596 33.989 2 1.692E-08 10348 20181213_JW_Orientia_Karp_1_1 204.79 158.38 224430000 74448000 57137000 62722000 13970000 0 0 10051000 6104900 3808 85 3342 23186;23187;23188;23189;23190;23191 15121;15122;15123;15124;15125;15126 15121 6 HYTEAIK Unmodified 860.43922 0.43921744 377 V9HW72;A8K690;P31948;P31948-2;P31948-3 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 18.991 19.231 2 0.033742 3332 20181213_JW_Orientia_Karp_2_3 86.866 23.56 10122000 3434800 2640000 0 1407400 0 1824800 815230 0 3809 377 3343 23192;23193;23194;23195;23196 15127 15127 1 IAAGSGTSVQEVNK Unmodified 1359.6994 0.69940789 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 30.223 30.617 2 7.2964E-35 8650 20181213_JW_Orientia_Karp_1_1 250.26 153.6 51479000 13669000 13394000 10117000 0 2775900 0 6736900 4786800 3810 1270 3344 23197;23198;23199;23200;23201;23202 15128;15129 15128 1 IAALQAFADQLIAAGHYAK Unmodified 1971.0578 0.057796236 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 70.09 70.234 3 0.0010378 25228 20181213_JW_Orientia_Karp_3_1 102.03 80.196 52414000 13513000 0 6370300 3039800 7144300 3032000 13300000 6014700 3811 316 3345 23203;23204;23205;23206;23207;23208;23209;23210 15130;15131;15132;15133;15134;15135;15136;15137 15136 8 IAASTLEMIEK Oxidation (M) 1220.6322 0.63223953 1322 Karp_01288 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 2 1 1 1 1 44.736 45.029 2 1.6283E-08 15722 20181213_JW_Orientia_Karp_1_2 194.94 114.7 127730000 30284000 36115000 28905000 2519200 8378600 11063000 10467000 0 3812 1322 3346 23211;23212;23213;23214;23215;23216;23217;23218 15138;15139;15140;15141 15139 885 4 IAASTLEMIEK Unmodified 1204.6373 0.6373249 1322 Karp_01288 yes yes 0 0 0 0 By MS/MS 1 50.853 51.051 2 0.0017996 19223 20181213_JW_Orientia_Karp_1_3 169.76 113.33 0 0 0 0 0 0 0 0 0 3813 1322 3346 23219 15142 15142 1 IADPGNVPAITR Unmodified 1222.667 0.66698555 1450 Karp_02530 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 45.113 45.446 2 0.014391 15026 20181213_JW_Orientia_Karp_3_1 90.653 51.631 37214000 18401000 18202000 0 0 0 0 611230 0 3814 1450 3347 23220;23221;23222 15143;15144 15144 2 IADSNIQF Unmodified 906.4447 0.44469675 1437 Karp_02402 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 57.29 57.466 2 0.018712 24059 20181213_JW_Orientia_Karp_1_1 89.752 24.949 15209000 6579600 0 2230400 0 1181900 5217600 0 0 3815 1437 3348 23223;23224;23225;23226 15145;15146 15145 2 IADVYYLK Unmodified 983.53278 0.53278348 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.871 48.216 2 0.00493 17918 20181213_JW_Orientia_Karp_1_1 123.69 52.394 629750000 108560000 164760000 165000000 71912000 39482000 55889000 95652 24049000 3816 1273 3349 23227;23228;23229;23230;23231;23232;23233;23234 15147;15148;15149;15150;15151;15152 15147 6 IAEAGIEELQK Unmodified 1199.6398 0.63976774 1404 Karp_02212 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 43.448 43.808 2 5.9976E-07 14962 20181213_JW_Orientia_Karp_1_2 180.09 73.21 128180000 49414000 32121000 28768000 6884900 0 0 10020000 973160 3817 1404 3350 23235;23236;23237;23238;23239;23240 15153;15154 15153 2 IAEELYEASNGR Deamidation (NQ) 1351.6256 0.62557424 1093 Karp_00242 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.145 44.447 2 1.0236E-22 15688 20181213_JW_Orientia_Karp_1_1 233.84 186.13 439310000 139500000 115460000 95571000 0 14274000 41337000 25192000 7977700 3818 1093 3351 23241;23242;23243;23244;23245;23246;23247 15155;15156;15157;15158;15159;15160;15161 15155 441 7 IAEELYEASNGRGGAVK Deamidation (NQ) 1763.869 0.86899241 1093 Karp_00242 yes yes 0 1 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 1 40.25 40.569 2;3 8.2313E-07 13165 20181213_JW_Orientia_Karp_1_2 169.58 117.85 158770000 37693000 36845000 39385000 11520000 669510 0 32299000 359300 3819 1093 3352 23248;23249;23250;23251;23252;23253;23254;23255;23256;23257;23258;23259 15162;15163;15164;15165 15163 441 4 IAEEVIFGK Unmodified 1004.5542 0.5542472 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 50.517 50.862 2 0.00080054 19117 20181213_JW_Orientia_Karp_1_3 140.5 99.274 402530000 66650000 101760000 43756000 101880000 33776000 52824000 1501100 384760 3820 1458 3353 23260;23261;23262;23263;23264;23265;23266;23267 15166;15167;15168;15169;15170;15171;15172 15168 7 IAEFTTNLTEEEEK Unmodified 1652.7781 0.77811172 47 A0A024R1N1;P35579;Q86XU5;Q99529 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.145 50.453 2 6.6298E-125 19404 20181213_JW_Orientia_Karp_1_1 345.57 230.56 1285100000 390630000 364320000 267020000 75296000 47877000 45023000 94948000 0 3821 47 3354 23268;23269;23270;23271;23272;23273;23274 15173;15174;15175;15176;15177;15178;15179 15173 7 IAEIEYETANK Unmodified 1279.6296 0.62959699 1362 Karp_01816 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 39.755 39.905 2 3.7749E-09 12694 20181213_JW_Orientia_Karp_1_3 198.72 131.75 53805000 31799000 0 20798000 0 0 1207500 0 0 3822 1362 3355 23275;23276;23277;23278;23279;23280 15180;15181;15182;15183;15184 15181 5 IAEITPSNDSLIIK Unmodified 1512.8399 0.83992412 1205 Karp_00841 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 56.838 57.189 2 0.026416 21661 20181213_JW_Orientia_Karp_2_3 80.871 33.643 78792000 14193000 13494000 15048000 9976700 9856200 7837100 5818400 2569100 3823 1205 3356 23281;23282;23283;23284;23285;23286;23287;23288 15185;15186;15187 15186 3 IAELEQSLK Unmodified 1029.5706 0.57062555 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 41.394 41.702 1;2 0.00080184 13789 20181213_JW_Orientia_Karp_1_2 140.11 47.642 1688600000 514820000 423440000 232020000 138350000 51599000 105290000 219150000 3940000 3824 1166 3357 23289;23290;23291;23292;23293;23294;23295;23296;23297;23298;23299;23300;23301;23302;23303;23304 15188;15189;15190;15191;15192;15193;15194;15195;15196;15197 15189 9 IAELLSPGSVDPLTR Unmodified 1566.8617 0.86172219 26 Q8IXH2;A0A024QZX3;A0A024QZX5;P35237 SERPINB6 Serpin B6 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 64.779 65.001 2 0.033522 28785 20181213_JW_Orientia_Karp_1_1 72.089 43.858 21898000 7267900 7877800 5315800 761670 0 0 0 674500 3825 26 3358 23305;23306;23307;23308;23309 15198 15198 1 IAEQVASFQEEK Unmodified 1377.6776 0.67760981 684 G3XAM7;B4E2G8;P35221;P35221-2;B4DKT9;B4DU00;P35221-3 CTNNA1 Catenin alpha-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 41.408 41.657 2 0.0022516 12768 20181213_JW_Orientia_Karp_3_2 145.14 90.053 130320000 48021000 49883000 25888000 6532500 0 0 0 0 3826 684 3359 23310;23311;23312;23313;23314 15199;15200;15201 15201 3 IAEQYIDALSK Unmodified 1249.6554 0.65541781 1104 Karp_00281 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 52.409 53.06 2 0.00095079 18587 20181213_JW_Orientia_Karp_3_1 130.1 50.112 29603000 0 0 0 0 0 0 29603000 0 3827 1104 3360 23315;23316;23317;23318;23319;23320 15202;15203;15204;15205;15206;15207 15207 6 IAESNHIK Unmodified 910.48723 0.48723027 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 16.522 16.671 2 0.033902 2933 20181213_JW_Orientia_Karp_1_1 80.438 17.721 2963700 1937000 0 899240 127490 0 0 0 0 3828 1509 3361 23321;23322;23323 15208;15209 15208 2 IAEVDASVVR Unmodified 1057.5768 0.57677356 1649 P31930;B4DUL5 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 41.855 42.126 2 0.019776 14511 20181213_JW_Orientia_Karp_1_1 84.213 12.87 70419000 26629000 15005000 18659000 0 1465000 0 8661000 0 3829 1649 3362 23324;23325;23326;23327;23328 15210 15210 1 IAEVDCTAER Unmodified 1162.5288 0.52883709 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 30.431 30.982 2 0.0052561 8369 20181213_JW_Orientia_Karp_1_2 102.06 59.713 3494400 0 2106200 0 0 0 0 1388200 0 3830 25 3363 23329;23330;23331 15211;15212;15213 15212 3 IAFAITAIK Unmodified 946.58515 0.5851534 1730 P62269;Q5GGW2 RPS18 40S ribosomal protein S18 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 57.434 57.699 2 0.0031043 23584 20181213_JW_Orientia_Karp_1_3 113.26 74.464 38969000 18449000 0 15885000 0 0 3419600 0 1215000 3831 1730 3364 23332;23333;23334;23335 15214;15215;15216 15215 3 IAFGFGQELK Unmodified 1108.5917 0.59169534 1332 Karp_01370 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 57.117 57.462 2 0.0011834 24151 20181213_JW_Orientia_Karp_1_1 120.31 65.53 345530000 113940000 107320000 45882000 3795600 17895000 29421000 124790 27144000 3832 1332 3365 23336;23337;23338;23339;23340;23341;23342;23343 15217;15218;15219;15220;15221;15222;15223 15217 7 IAGDIDQDADEK Unmodified 1288.5783 0.5782897 1268 Karp_01076 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 32.944 33.344 2 0.0057971 8383 20181213_JW_Orientia_Karp_2_2 105.65 56.46 9954500 0 0 0 7178300 2776200 0 0 0 3833 1268 3366 23344;23345 15224;15225 15225 2 IAGEASR Unmodified 702.36605 0.3660525 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;P23527;P33778;Q6DRA6;Q6DN03;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BO;HIST1H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-O;Histone H2B type 1-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 1 2 1 1 15.176 15.407 2 0.011976 2361 20181213_JW_Orientia_Karp_3_1 124.34 34.44 45553000 36134000 988640 5964900 386670 0 683300 1395200 0 3834 449;1624;1817 3367 23346;23347;23348;23349;23350;23351;23352;23353;23354 15226;15227;15228;15229;15230 15230 5 IAGEASRLAHYNKR Deamidation (NQ) 1585.8325 0.83248775 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;A8K9J7;P23527;P33778;Q6DRA6;Q6DN03;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BO;HIST1H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type 1-O;Histone H2B type 1-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J no no 0 1 0 2 By MS/MS 1 11.358 11.91 4 0.041851 1815 20181213_JW_Orientia_Karp_2_2 46.159 8.219 135880 0 0 0 0 135880 0 0 0 3835 449;1624;1817 3368 23355 15231 15231 0 IAGPGLGSGVR Unmodified 982.55598 0.55597854 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 37.681 38.003 2 0.0010535 11846 20181213_JW_Orientia_Karp_1_2 128.6 74.053 241340000 57457000 66661000 66958000 6324600 22159000 1373800 20405000 0 3836 1520 3369 23356;23357;23358;23359;23360;23361;23362 15232;15233;15234;15235;15236;15237 15233 6 IAGQVAAANK Unmodified 941.52943 0.52942943 433 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 RPS19 40S ribosomal protein S19 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 22.857 23.189 2 1.7318E-08 4832 20181213_JW_Orientia_Karp_3_1 199.07 118.84 109130000 15055000 25345000 21921000 11626000 7554300 7094200 14631000 5901200 3837 433 3370 23363;23364;23365;23366;23367;23368;23369;23370 15238;15239;15240;15241;15242;15243;15244;15245 15244 8 IAGYVTHLMK Oxidation (M) 1147.606 0.6059652 1572 P0CW22;P08708;H0YN88;A0A075B716;A4D1Q6 RPS17L;RPS17;LOC392101 40S ribosomal protein S17-like;40S ribosomal protein S17 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 32.526 32.883 2;3 0.0033312 8896 20181213_JW_Orientia_Karp_3_1 104.05 42.268 101740000 29641000 21419000 17623000 11084000 6167000 2740900 9273800 3789700 3838 1572 3371 23371;23372;23373;23374;23375;23376;23377;23378;23379;23380;23381;23382;23383;23384;23385;23386 15246;15247;15248;15249;15250;15251;15252;15253;15254 15253 1196 9 IAGYVTHLMK Unmodified 1131.6111 0.61105057 1572 P0CW22;P08708;H0YN88;A0A075B716;A4D1Q6 RPS17L;RPS17;LOC392101 40S ribosomal protein S17-like;40S ribosomal protein S17 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 39.716 39.891 3 0.00014665 13371 20181213_JW_Orientia_Karp_1_1 138.08 75.004 99297000 73071000 26226000 0 0 0 0 0 0 3839 1572 3371 23387;23388;23389;23390 15255;15256;15257;15258 15255 4 IAHISELEAEEIINQAK Unmodified 1907 6.5851004E-06 1312 Karp_01264 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.515 54.831 3 5.4612E-12 20082 20181213_JW_Orientia_Karp_2_2 182.02 113.76 274430000 36466000 74299000 75837000 25265000 27046000 33685000 0 1831700 3840 1312 3372 23391;23392;23393;23394;23395;23396;23397 15259;15260;15261;15262;15263 15262 5 IAIDEIDVIK Unmodified 1127.6438 0.64379049 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.586 60.921 2 0.0010227 25911 20181213_JW_Orientia_Karp_1_2 123.86 65.9 161700000 0 26910000 65386000 2886500 21314000 23864000 0 21338000 3841 1262 3373 23398;23399;23400;23401;23402;23403 15264;15265;15266;15267;15268;15269;15270 15264 7 IAIPDTTSFDQNEK Unmodified 1577.7573 0.7573167 1430 Karp_02387 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.735 53.08 2 0.0026494 21174 20181213_JW_Orientia_Karp_1_1 120.55 85.83 119720000 16285000 26851000 36186000 11991000 8320100 8299300 10180000 1603300 3842 1430 3374 23404;23405;23406;23407;23408;23409;23410;23411 15271;15272 15271 2 IAIYELLFK Unmodified 1108.6532 0.65323296 1675 P46783;Q59GE4;F6U211;S4R435 RPS10;RPS10-NUDT3 40S ribosomal protein S10 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.124 73.173 2 0.0012936 33796 20181213_JW_Orientia_Karp_1_1 127.56 72.501 303230000 24397000 108670000 52075000 0 16134000 15555000 86400000 0 3843 1675 3375 23412;23413;23414;23415;23416;23417 15273;15274;15275;15276;15277 15273 5 IAKEEIFGPVQEILR Deamidation (NQ) 1741.9614 0.96143623 575 H0YMG7;B4DH89;O94788-4;O94788-2;O94788-3;O94788 ALDH1A2 Retinal dehydrogenase 2 yes no 0 1 0 1 By MS/MS 1 68.149 68.559 3 0.02612 26858 20181213_JW_Orientia_Karp_3_2 85.287 29.307 0 0 0 0 0 0 0 0 0 3844 575 3376 23418 15278 15278 1526 1 IALLLMASQEPQR Oxidation (M) 1484.8021 0.80209882 1466 L8E853 VWF yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 54.856 55.249 2 0.0020388 19230 20181213_JW_Orientia_Karp_3_2 121.61 78.523 28575000 6946400 5760000 12033000 2557300 0 0 568010 711110 3845 1466 3377 23419;23420;23421;23422;23423;23424 15279;15280 15280 1084 2 IALLLMASQEPQR Unmodified 1468.8072 0.8071842 1466 L8E853 VWF yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 62.396 62.645 2 0.00065511 27350 20181213_JW_Orientia_Karp_1_1 149.33 88.898 24546000 10551000 5851500 7958000 185120 0 0 0 0 3846 1466 3377 23425;23426;23427;23428 15281 15281 1 IALNNAMAK Oxidation (M) 960.50625 0.50625115 1449 Karp_02529 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 28.518 28.877 2 5.3949E-06 7431 20181213_JW_Orientia_Karp_1_2 200.12 127.33 119870000 29092000 45798000 14193000 6082600 0 4840800 6282100 13580000 3847 1449 3378 23429;23430;23431;23432;23433;23434;23435 15282;15283;15284;15285;15286 15283 1051 5 IALTDNALIAR Unmodified 1169.6768 0.67682195 155 A8MUD9;O95036;A0A024R814;P18124 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.303 54.583 2 6.886E-06 21815 20181213_JW_Orientia_Karp_1_2 176.6 105.78 59094000 17283000 25213000 0 5853800 4058900 6685900 0 0 3848 155 3379 23436;23437;23438;23439;23440;23441 15287;15288;15289;15290;15291;15292 15288 6 IAMDFYSQGK Unmodified 1158.5379 0.53794521 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.128 49.43 2 0.00017414 17415 20181213_JW_Orientia_Karp_2_3 134.05 82.524 345340000 99289000 84592000 81414000 36039000 15008000 16713000 0 12280000 3849 1126 3380 23442;23443;23444;23445;23446;23447;23448 15293;15294;15295;15296;15297;15298;15299 15298 7 IAMDFYSQGK Oxidation (M) 1174.5329 0.53285983 1126 Karp_00329 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 1 38.623 38.961 2 0.0061917 12013 20181213_JW_Orientia_Karp_2_3 98.048 52.047 307860000 59328000 66746000 48567000 31430000 24854000 16541000 52162000 8235600 3850 1126 3380 23449;23450;23451;23452;23453;23454;23455;23456;23457;23458;23459 15300;15301;15302;15303;15304;15305 15304 656 6 IAMWHGTGAK Unmodified 1070.5331 0.5331346 1290 Karp_01163 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 31.436 31.67 3 0.033887 8779 20181213_JW_Orientia_Karp_1_2 53.327 11.9 23119000 14184000 8801300 0 0 133130 0 0 0 3851 1290 3381 23460;23461;23462 15306 15306 1 IANAMKQVGQEGVITVEDSK Oxidation (M) 2132.0783 0.078333261 1296 Karp_01187 yes yes 0 0 1 1 By MS/MS By matching 1 1 38.392 38.467 3 0.0012642 12548 20181213_JW_Orientia_Karp_1_1 113.23 70.525 6029900 5269800 0 0 0 760150 0 0 0 3852 1296 3382 23463;23464 15307 15307 849 1 IANIEMFEEYNR Oxidation (M) 1543.6977 0.69769333 1276 Karp_01108 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 1 2 52.072 52.405 2 0.00089464 20495 20181213_JW_Orientia_Karp_1_2 133.05 86.643 56302000 22551000 11079000 12612000 3409300 4104400 0 1537300 1010000 3853 1276 3383 23465;23466;23467;23468;23469;23470;23471;23472;23473;23474;23475 15308;15309;15310;15311;15312 15309 841 5 IANIEMFEEYNR Unmodified 1527.7028 0.70277871 1276 Karp_01108 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 58.295 58.47 2 0.00021272 24717 20181213_JW_Orientia_Karp_1_1 179.94 122.77 29617000 13850000 15767000 0 0 0 0 0 0 3854 1276 3383 23476;23477 15313;15314 15313 2 IANLIMPEK Oxidation (M) 1043.5685 0.56851706 1063 Karp_00007 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 42.84 43.015 2 0.0041856 14388 20181213_JW_Orientia_Karp_1_3 104.06 38.591 28096000 8780400 11645000 6283300 0 1387200 0 0 0 3855 1063 3384 23478;23479;23480;23481 15315;15316;15317;15318 15317 582 4 IANLQTDLSDGLR Unmodified 1414.7416 0.74160705 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 54.061 54.382 2 3.0336E-11 21668 20181213_JW_Orientia_Karp_1_2 198.97 130.24 166520000 57741000 32191000 43020000 9360700 11721000 11937000 545980 0 3856 1615 3385 23482;23483;23484;23485;23486;23487;23488 15319;15320 15320 2 IAPNIEDGYVIAADTVVAVGR Unmodified 2142.1321 0.13208339 1137 Karp_00449 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 72.497 72.555 2;3 0.00058208 33389 20181213_JW_Orientia_Karp_1_2 113.11 89.352 107600000 53955000 15740000 22394000 0 0 7955100 7559600 0 3857 1137 3386 23489;23490;23491;23492;23493;23494 15321;15322;15323 15322 3 IAQAQQNAGINQPDAPK Unmodified 1762.8962 0.89621022 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 1 34.19 34.53 2;3 7.9146E-84 10074 20181213_JW_Orientia_Karp_1_2 298.82 212.48 279280000 57524000 90790000 60648000 16339000 14135000 8674700 25451000 5715900 3858 1266 3387 23495;23496;23497;23498;23499;23500;23501;23502;23503;23504;23505;23506;23507;23508;23509;23510 15324;15325;15326;15327;15328;15329;15330;15331;15332;15333;15334 15325 11 IAQAQQNAGINQPDAPK Deamidation (NQ) 1763.8802 0.8802258 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 2 1 2 1 36.001 36.335 2 5.5028E-17 10044 20181213_JW_Orientia_Karp_2_2 208.82 159.4 70956000 19968000 15998000 22485000 2018400 3393000 0 7093800 0 3859 1266 3387 23511;23512;23513;23514;23515;23516;23517;23518;23519;23520;23521;23522;23523;23524;23525 15335;15336;15337;15338;15339;15340;15341;15342;15343 15340 676;677 9 IAQAQQNAGINQPGAPK Deamidation (NQ) 1705.8747 0.87474649 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 34.852 35.173 2 2.3406E-12 10864 20181213_JW_Orientia_Karp_1_1 194.17 149.74 19129000 4378800 2676400 5064200 1822000 1617000 1362600 2207900 0 3860 1266 3388 23526;23527;23528;23529;23530;23531;23532;23533;23534 15344;15345;15346;15347;15348;15349;15350 15344 678 7 IAQAQQNAGINQPGAPK Unmodified 1704.8907 0.89073091 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.127 33.502 2 3.8539E-141 8804 20181213_JW_Orientia_Karp_2_1 336.92 268.08 311670000 0 87711000 118960000 30538000 37013000 16436000 21017000 0 3861 1266 3388 23535;23536;23537;23538;23539;23540;23541 15351;15352;15353;15354;15355;15356;15357 15354 7 IAQISTEILQR Unmodified 1270.7245 0.72450043 1234 Karp_00901 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 51.565 51.91 2 2.4225E-09 18552 20181213_JW_Orientia_Karp_2_2 202.96 90.552 2174800000 585870000 358600000 551260000 221270000 169590000 199880000 58440000 29870000 3862 1234 3389 23542;23543;23544;23545;23546;23547;23548;23549 15358;15359;15360;15361;15362;15363 15360 6 IAQLEEELEEEQGNTELINDR Unmodified 2471.1664 0.16635622 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.763 61.065 3 5.4103E-12 26311 20181213_JW_Orientia_Karp_1_1 177.09 143.72 414140000 138190000 95617000 79436000 0 37860000 21617000 4188500 37225000 3863 47 3390 23550;23551;23552;23553;23554;23555;23556 15364;15365;15366;15367;15368;15369;15370 15364 7 IAQLEEELEEEQGNTELINDR Deamidation (NQ) 2472.1504 0.15037181 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 1 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 62.499 62.74 3 5.9162E-05 26869 20181213_JW_Orientia_Karp_1_3 131.35 80.482 69454000 24697000 12033000 24575000 0 0 4011400 0 4137800 3864 47 3390 23557;23558;23559;23560;23561 15371 15371 18 1 IAQLEEELEEEQSNMELLNDR Oxidation (M) 2547.1646 0.16464167 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS 1 61.208 61.558 3 0.017309 26352 20181213_JW_Orientia_Karp_1_2 94.671 69.518 0 0 0 0 0 0 0 0 0 3865 944 3391 23562 15372 15372 532 1 IAQLEEQLDNETK Deamidation (NQ) 1530.7413 0.74133228 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 2 1 1 46.268 46.518 2 9.2647E-17 16794 20181213_JW_Orientia_Karp_1_1 212.68 137.29 71275000 21797000 10944000 27465000 3519800 1073700 4850900 1623800 0 3866 47 3392 23563;23564;23565;23566;23567;23568;23569;23570;23571;23572;23573 15373;15374;15375;15376;15377;15378 15373 19 4 IAQLEEQLDNETK Unmodified 1529.7573 0.7573167 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 1 44.965 45.265 2 2.8314E-58 14914 20181213_JW_Orientia_Karp_3_1 273.24 206.03 497690000 112760000 164850000 192350000 0 0 0 27723000 0 3867 47 3392 23574;23575;23576;23577;23578;23579;23580;23581 15379;15380;15381;15382;15383;15384;15385 15385 6 IAQMVIAK Oxidation (M) 888.51027 0.5102739 1378 Karp_02115 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 29.425 29.752 2 0.0074141 8266 20181213_JW_Orientia_Karp_1_1 107.32 54.915 77364000 20431000 21073000 16013000 15101000 0 2808300 0 1938300 3868 1378 3393 23582;23583;23584;23585;23586;23587 15386 15386 975 1 IAQMVIAK Unmodified 872.51536 0.51535927 1378 Karp_02115 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 38.658 38.958 2 0.004224 12223 20181213_JW_Orientia_Karp_1_3 134.66 57.817 48888000 22962000 13916000 10553000 0 0 0 1456900 0 3869 1378 3393 23588;23589;23590;23591 15387;15388 15388 2 IAQSDYIPTQQDVLR Unmodified 1745.8948 0.89481323 1555 P04899;P04899-4;B3KP24;B3KX51;Q96C71;P04899-6;P04899-3;P04899-5;P04899-2;Q93020 GNAI2;WUGSC:H_LUCA16.1 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 53.657 53.973 2 6.2997E-05 21757 20181213_JW_Orientia_Karp_1_1 168.76 110.92 151760000 56405000 29115000 46634000 8141800 5761500 5534300 0 171530 3870 1555 3394 23592;23593;23594;23595;23596;23597;23598 15389;15390;15391;15392;15393 15389 5 IAQSYALLGR Unmodified 1090.6135 0.61349341 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.133 47.406 2 1.5069E-08 16064 20181213_JW_Orientia_Karp_2_1 200.56 133.07 437740000 124760000 97086000 93763000 35776000 21247000 36986000 0 28122000 3871 1273 3395 23599;23600;23601;23602;23603;23604;23605 15394;15395;15396;15397;15398;15399;15400;15401 15397 8 IAQTTDIISK Unmodified 1088.6077 0.60773933 1361 Karp_01814 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 38.672 39.017 2 0.00076693 12816 20181213_JW_Orientia_Karp_1_1 128.35 75.259 84775000 18146000 33196000 14497000 6748400 0 2914000 7519400 1754100 3872 1361 3396 23606;23607;23608;23609;23610;23611;23612;23613 15402;15403;15404;15405;15406 15402 5 IASAMDNELGK Oxidation (M) 1163.5492 0.54923818 1066 Karp_00014 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 2 1 29.561 29.762 2 0.00058219 7302 20181213_JW_Orientia_Karp_2_3 133.75 88.73 33059000 16471000 14464000 0 0 0 2125300 0 0 3873 1066 3397 23614;23615;23616;23617 15407;15408;15409 15409 584 3 IASAMDNELGK Unmodified 1147.5543 0.55432356 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 38.154 38.516 2 0.0027506 12009 20181213_JW_Orientia_Karp_1_2 117.71 86.176 42759000 0 24666000 15332000 0 0 390810 2370000 0 3874 1066 3397 23618;23619;23620;23621 15410;15411 15410 2 IASLEVENQSLR Unmodified 1357.7201 0.72014333 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PK01;Q71RH4;Q9H7G6;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PL71;E9PN91;E9PIZ1;H0YCK7 EEF1D Elongation factor 1-delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.818 46.162 2 4.2792E-40 15675 20181213_JW_Orientia_Karp_2_3 261.35 155.16 425580000 77218000 102660000 121510000 51860000 0 32893000 6797800 32640000 3875 1641 3398 23622;23623;23624;23625;23626;23627;23628 15412;15413;15414;15415;15416;15417;15418;15419;15420;15421 15418 10 IASLIASGAELASYK Unmodified 1492.8137 0.81370936 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 58.766 59.086 2 9.3838E-38 25161 20181213_JW_Orientia_Karp_1_1 252.96 185.84 571360000 144070000 181310000 125700000 21509000 41240000 35754000 12779000 8997700 3876 1349 3399 23629;23630;23631;23632;23633;23634;23635;23636 15422;15423;15424;15425;15426 15422 5 IASYYADNK Unmodified 1043.4924 0.49237523 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 30.113 30.295 2 0.00024363 8421 20181213_JW_Orientia_Karp_1_1 176.44 131.11 69486000 21780000 23201000 24505000 0 0 0 0 0 3877 1133 3400 23637;23638;23639 15427;15428 15427 2 IATGHGQQGVTQVVLK Unmodified 1634.9104 0.91040372 313 A6NEM2;P51610-2;P51610;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 36.131 36.431 3 0.020619 11056 20181213_JW_Orientia_Karp_1_2 63.062 32.495 50678000 20414000 15258000 9739000 0 0 0 5267300 0 3878 313 3401 23640;23641;23642;23643 15429;15430;15431;15432 15430 4 IATLGYLPTQQDVLR Unmodified 1686.9305 0.93047046 1054 K7EL62;Q59FM5;P29992 GNA11 Guanine nucleotide-binding protein subunit alpha-11 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 63.018 63.282 2 0.0010858 27383 20181213_JW_Orientia_Karp_1_2 148.89 79.997 40240000 15698000 9200800 14133000 0 0 0 0 1208400 3879 1054 3402 23644;23645;23646;23647 15433 15433 1 IATSLDGFDVASVQQQR Unmodified 1833.9221 0.92209062 1515 O60664-4;O60664-3;O60664;K7ERZ3;O60664-2 PLIN3 Perilipin-3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 58.807 59.032 2;3 8.2763E-05 24746 20181213_JW_Orientia_Karp_1_2 144.51 86.622 148790000 52660000 32295000 52608000 5121000 6103000 0 0 0 3880 1515 3403 23648;23649;23650;23651;23652;23653;23654;23655 15434;15435;15436 15435 3 IATTTASAATAAAIGATPR Unmodified 1714.9214 0.92136233 118 A0A024R5M9;Q4LE64;Q14980-2;Q14980;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q14980-5;Q9UNL7 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 47.81 48.105 2;3 0.0066954 17865 20181213_JW_Orientia_Karp_1_1 133.98 46.187 39466000 11391000 16947000 9214500 0 0 0 388020 1525300 3881 118 3404 23656;23657;23658;23659;23660;23661;23662;23663 15437;15438;15439 15437 3 IATVLQGVYDNYDIDLFK Unmodified 2086.0623 0.062272491 1382 Karp_02121 yes yes 0 0 0 0 By MS/MS By matching 1 1 73.782 73.806 2 0.00038216 34184 20181213_JW_Orientia_Karp_1_2 156.96 109.53 38530000 0 18501000 20028000 0 0 0 0 0 3882 1382 3405 23664;23665 15440 15440 1 IAVANLK Unmodified 727.45922 0.4592246 1172 Karp_00626 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 2 1 35.312 35.656 2 0.026839 10724 20181213_JW_Orientia_Karp_1_2 93.593 9.5683 17476000 2837400 5261400 3554800 0 2105400 0 2553300 1164000 3883 1172 3406 23666;23667;23668;23669;23670;23671;23672;23673 15441;15442;15443 15441 3 IAVQPGTVGPQGR Unmodified 1278.7044 0.70443369 265 A0A024RDW8;P08572;B4DH43 COL4A2 Collagen alpha-2(IV) chain;Canstatin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 38.583 38.9 2 0.0031975 11891 20181213_JW_Orientia_Karp_3_1 117.25 63.757 92908000 29550000 22659000 16869000 9270600 2914600 0 11645000 0 3884 265 3407 23674;23675;23676;23677;23678;23679 15444;15445;15446 15446 3 IAWESPQGQVSR Unmodified 1356.6786 0.67861287 85 A0A024R462;P02751-17;P02751-3;P02751;P02751-6;P02751-5;P02751-7;P02751-15;P02751-4;P02751-11;Q6MZM7;Q68CX6;Q5CZ99;A6YID3;A6YID2;A6YID6;A6YID5 FN1;DKFZp686O12165;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 43.013 43.453 2 0.00052834 14013 20181213_JW_Orientia_Karp_3_1 158.08 107.28 105570000 0 0 0 12384000 33519000 0 51931000 7740100 3885 85 3408 23680;23681;23682;23683 15447 15447 1 IAWLKNCAGIDYR Unmodified 1578.7977 0.79768214 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 48.671 48.997 3 0.0076035 18510 20181213_JW_Orientia_Karp_1_1 103.43 75.752 119290000 31676000 25430000 27845000 14214000 0 14295000 0 5829600 3886 1371 3409 23684;23685;23686;23687;23688;23689 15448 15448 1 IAWLKNCAGIDYR Deamidation (NQ) 1579.7817 0.78169773 1371 Karp_02001 yes yes 0 1 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 53.059 53.297 3 0.0093719 19300 20181213_JW_Orientia_Karp_2_2 109.16 72.874 21241000 8917300 0 0 3885100 3240300 5197900 0 0 3887 1371 3409 23690;23691;23692;23693 15449;15450;15451 15450 840 3 IAWPPPTELGSSGSALEEGIK Unmodified 2138.0895 0.089549874 605 F8VQE1;B4DN52;Q53GG0;Q9UHB6-2;Q9UHB6-5;Q9UHB6;Q9UHB6-4;F8VS07;B3KTW2;Q9UHB6-3 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 0 By MS/MS 1 65.468 65.919 2 0.0088676 23034 20181213_JW_Orientia_Karp_3_1 60.196 34.869 7129700 0 0 0 0 0 0 7129700 0 3888 605 3410 23694 15452 15452 1 IAYHAGVSAWQNDTNLNSMSIGIEHVNR Oxidation (M) 3112.4785 0.47847986 1135 Karp_00415 yes yes 0 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 50.388 50.828 4 0.038037 19119 20181213_JW_Orientia_Karp_1_2 40.145 9.2201 19901000 0 6664400 0 7644900 0 3988400 0 1603000 3889 1135 3411 23695;23696;23697;23698 15453 15453 1 ICDQWDALGSLTHSR Unmodified 1757.8155 0.81551705 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 54.819 55.135 3 5.1397E-06 22183 20181213_JW_Orientia_Karp_1_2 163.64 122.26 223980000 37467000 41765000 103660000 24811000 7740800 8001100 0 542080 3890 1509 3412 23699;23700;23701;23702;23703;23704;23705 15454;15455;15456;15457;15458 15455 5 ICDQWDNLGALTQK Unmodified 1660.7879 0.78790532 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;Q86TX4;B3KUX9;B7Z2W3;H7C5W8 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 58.822 59.172 2 2.9611E-59 24823 20181213_JW_Orientia_Karp_1_2 283.47 187.97 36988000 0 29945000 0 2608300 4435100 0 0 0 3891 133 3413 23706;23707;23708 15459 15459 1 ICEPGYSPTYK Unmodified 1313.5962 0.59618837 77;1867 B4DL49;A0A024R374;P07858;B4DMY4;B3KUJ8;A8K2H4;Q6LAF9 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain no no 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 38.565 38.908 2 0.0032211 11429 20181213_JW_Orientia_Karp_3_2 112.75 64.879 87766000 38629000 0 15593000 9579200 4311500 0 14043000 5610900 3892 77;1867 3414 23709;23710;23711;23712;23713;23714 15460;15461;15462 15462 3 ICFVSNTPQPVQHSSNR Unmodified 1969.9428 0.94284283 1261 Karp_01021 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 38.965 39.315 3 0.011562 12397 20181213_JW_Orientia_Karp_1_3 74.769 42.219 71001000 26295000 15348000 14344000 5156000 0 0 9857800 0 3893 1261 3415 23715;23716;23717;23718;23719 15463;15464 15463 2 ICGNIDVDKPLQLVTVTPVMLK Unmodified 2452.3433 0.34333849 1193 Karp_00798 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 70.547 70.671 3 0.0036419 32101 20181213_JW_Orientia_Karp_1_2 96.467 74.851 69560000 15201000 9507800 0 2784200 6223900 5730400 30113000 0 3894 1193 3416 23720;23721;23722;23723;23724;23725 15465;15466;15467;15468;15469 15466 5 ICGNIDVDKPLQLVTVTPVMLK Oxidation (M) 2468.3383 0.33825312 1193 Karp_00798 yes yes 0 0 1 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 67.267 67.444 3 0.0012289 29829 20181213_JW_Orientia_Karp_1_2 109.37 72.892 58305000 11882000 5680500 8392300 0 11843000 6037900 0 14469000 3895 1193 3416 23726;23727;23728;23729;23730;23731 15470;15471;15472;15473 15470 757 4 ICIPVHGEPIHIHEHANLAK Unmodified 2284.1899 0.18988982 1320 Karp_01282 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 39.053 39.387 5 0.01822 12113 20181213_JW_Orientia_Karp_3_1 55.907 25.813 21227000 0 0 8044100 0 3666800 0 9516300 0 3896 1320 3417 23732;23733;23734 15474 15474 1 ICLLDQNK Unmodified 1002.5168 0.51681584 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 41.542 41.771 2 0.011544 14363 20181213_JW_Orientia_Karp_1_1 101.33 28.538 216600000 57780000 81322000 41388000 17523000 18588000 0 0 0 3897 1169 3418 23735;23736;23737;23738;23739;23740;23741;23742 15475;15476;15477;15478;15479;15480;15481 15475 7 ICPIETPEGQNIGLINSLAIFAK Unmodified 2497.325 0.32504589 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 74.702 74.734 3 2.1961E-07 34784 20181213_JW_Orientia_Karp_1_2 138.28 78.239 133890000 38750000 18814000 31548000 561080 8290400 4161200 19890000 11873000 3898 1170 3419 23743;23744;23745;23746;23747;23748;23749;23750 15482;15483;15484;15485;15486;15487;15488 15483 7 ICQHLSEQER Unmodified 1298.6037 0.60373336 1183 Karp_00671 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 21.176 21.351 3 0.030841 4177 20181213_JW_Orientia_Karp_1_3 69.65 27.175 8790700 2530800 0 2626100 1531200 0 2102800 0 0 3899 1183 3420 23751;23752;23753;23754 15489 15489 1 IDAGNIIGEFGGVEVIIPR Unmodified 1968.068 0.068026571 1365 Karp_01875 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 75.335 75.37 2 3.3456E-10 28174 20181213_JW_Orientia_Karp_3_1 178.22 121.11 61020000 28787000 17261000 0 4720200 0 3196200 6758100 298570 3900 1365 3421 23755;23756;23757;23758;23759;23760 15490;15491;15492;15493 15493 4 IDAIDAWNLDR Unmodified 1300.6412 0.64116473 1315 Karp_01271 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.711 62.97 2 1.9798E-72 27165 20181213_JW_Orientia_Karp_1_2 304.63 157.84 308660000 114930000 41857000 48861000 6495300 52627000 32591000 0 11295000 3901 1315 3422 23761;23762;23763;23764;23765;23766;23767 15494;15495;15496;15497;15498;15499;15500 15495 7 IDATSASVLASR Unmodified 1189.6303 0.63026569 1594 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 44.726 45.178 2 3.1755E-08 15030 20181213_JW_Orientia_Karp_3_1 193.96 99.273 31472000 23710000 0 0 5679500 0 0 1862500 220180 3902 1594 3423 23768;23769;23770;23771;23772;23773;23774 15501;15502;15503;15504 15504 4 IDDITFLK Unmodified 963.5277 0.5276981 1135 Karp_00415 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.902 57.224 2 0.0032591 21569 20181213_JW_Orientia_Karp_2_1 155 78.962 66036000 14340000 0 27488000 3575200 0 16547000 0 4085400 3903 1135 3424 23775;23776;23777;23778;23779;23780;23781 15505;15506;15507;15508;15509;15510 15507 6 IDELAELK Unmodified 929.50696 0.50696266 1428 Karp_02381 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 46.368 46.567 2 0.013215 16355 20181213_JW_Orientia_Karp_1_3 98.629 8.0285 106550000 37523000 39823000 24354000 0 0 4854400 0 0 3904 1428 3425 23782;23783;23784;23785 15511;15512 15511 2 IDELANAVDEYIK Deamidation (NQ) 1492.7297 0.72970496 1274 Karp_01105 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 60.205 60.455 2 4.7527E-06 23382 20181213_JW_Orientia_Karp_2_1 179.67 116.59 137310000 24411000 45712000 33653000 16468000 17061000 0 0 0 3905 1274 3426 23786;23787;23788;23789;23790 15513;15514;15515;15516 15515 693 4 IDELANAVDEYIK Unmodified 1491.7457 0.74568938 1274 Karp_01105 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 63.763 64.048 2 2.6062E-42 28083 20181213_JW_Orientia_Karp_1_1 268.14 194.3 420660000 0 104220000 201110000 19767000 0 61409000 3133600 31021000 3906 1274 3426 23791;23792;23793;23794;23795;23796;23797;23798 15517;15518;15519;15520;15521;15522;15523;15524;15525 15517 9 IDENILQQNQLVELNK Unmodified 1910.0109 0.010905622 1207 Karp_00849 yes yes 0 0 0 0 By MS/MS By matching 1 1 61.83 62.18 2 0.0002572 24321 20181213_JW_Orientia_Karp_2_1 142.85 83.485 5778400 0 0 0 718460 5060000 0 0 0 3907 1207 3427 23799;23800 15526;15527;15528 15527 3 IDESGVPFISNSPK Deamidation (NQ) 1489.73 0.73003931 2060 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 1 1 2 1 39.043 39.361 2 0.011536 12558 20181213_JW_Orientia_Karp_1_2 104.43 39.614 91907000 26255000 25707000 21042000 0 2974000 0 10694000 5235200 + 3908 2060 3428 23801;23802;23803;23804;23805;23806;23807;23808;23809 15529;15530;15531 15530 1251 3 IDESGVPFISNSPK Unmodified 1488.746 0.74602373 2060 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 3 1 2 1 2 2 1 36.985 37.363 2 0.015658 10998 20181213_JW_Orientia_Karp_2_1 89.266 17.652 1046400000 182010000 340650000 177810000 90496000 95514000 8525600 150100000 1258200 + 3909 2060 3428 23810;23811;23812;23813;23814;23815;23816;23817;23818;23819;23820;23821;23822 15532;15533 15533 2 IDFEDVIAEPEGTHSFDGIWK Unmodified 2404.1223 0.12230657 1766 Q2TNI1;Q03135;E9PCT5;A9XTE5;Q59E85;C9JKI3;Q7Z4F3;A0A024R757;Q03135-2 CAV1 Caveolin;Caveolin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 72.293 72.351 3 0.0018156 33294 20181213_JW_Orientia_Karp_1_2 94.639 57.354 210590000 70866000 26407000 52295000 0 19295000 8080300 32027000 1620900 3910 1766 3429 23823;23824;23825;23826;23827;23828;23829 15534;15535;15536 15535 3 IDGEPGSTVQFK Unmodified 1276.6299 0.62993134 1156 Karp_00571 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.359 42.652 2 0.00078546 13880 20181213_JW_Orientia_Karp_2_3 150.15 86.618 225940000 52307000 49539000 65644000 13477000 16905000 10402000 17664000 0 3911 1156 3430 23830;23831;23832;23833;23834;23835;23836 15537;15538;15539;15540;15541;15542;15543 15542 7 IDIIPNPQER Unmodified 1193.6404 0.64043645 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;Q58FF7;O14942 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 51.665 52.04 2 0.01133 18811 20181213_JW_Orientia_Karp_2_3 76.282 19.85 598110000 218880000 122820000 137290000 41390000 17114000 30983000 25425000 4210600 3912 251 3431 23837;23838;23839;23840;23841;23842;23843;23844;23845 15544;15545;15546;15547;15548 15546 5 IDINMSGFNETDDLK Oxidation (M) 1726.772 0.77198048 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;H7C4N2 PLS3 Plastin-3 yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.226 53.526 2 2.5154E-62 18911 20181213_JW_Orientia_Karp_3_1 274.39 188.28 80417000 17077000 36188000 23962000 0 0 0 3189200 0 3913 623 3432 23846;23847;23848;23849;23850;23851 15549;15550;15551;15552 15552 382 4 IDINMSGFNETDDLK Unmodified 1710.7771 0.77706586 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;H7C4N2 PLS3 Plastin-3 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 2 1 1 2 1 61.459 61.766 2 3.2295E-09 26588 20181213_JW_Orientia_Karp_1_2 192.4 96.923 77295000 17197000 12563000 33363000 0 4751900 2642800 3666800 3110800 3914 623 3432 23852;23853;23854;23855;23856;23857;23858;23859;23860 15553;15554 15553 2 IDLAVLLGK Unmodified 940.59572 0.59571809 666 B4DZJ6;F8W726;B4DYY5;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 69.686 69.776 2 0.00079758 31176 20181213_JW_Orientia_Karp_1_3 141.39 87.232 21256000 5781800 3596300 8798900 0 2041900 1037400 0 0 3915 666 3433 23861;23862;23863;23864;23865 15555;15556;15557 15557 3 IDLSSNTLTLASDSISILGHK Unmodified 2184.1638 0.16377745 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 71.3 71.393 3 0.00016654 29034 20181213_JW_Orientia_Karp_2_1 114.9 81.206 161150000 25053000 38665000 39632000 6940700 17683000 7147500 26028000 0 3916 1193 3434 23866;23867;23868;23869;23870;23871;23872 15558;15559;15560;15561;15562;15563 15561 6 IDNDGDGFVTTEELK Unmodified 1651.7577 0.75771063 1805 V9HW95;Q15293;Q15293-2 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 0 0 By MS/MS 1 52.568 52.767 2 0.020429 20394 20181213_JW_Orientia_Karp_1_3 101.45 53.493 0 0 0 0 0 0 0 0 0 3917 1805 3435 23873 15564 15564 1 IDNLHRPFIDQLTR Unmodified 1736.9322 0.93220179 1123 Karp_00323 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 45.731 46.024 3 0.0050536 15976 20181213_JW_Orientia_Karp_1_3 110.55 76.882 124390000 32915000 36101000 32718000 8570600 5907500 7434600 747410 0 3918 1123 3436 23874;23875;23876;23877;23878;23879;23880 15565;15566;15567;15568;15569 15567 5 IDNNILTVEGHK Unmodified 1351.7096 0.70957864 1077 Karp_00059 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 40.096 40.396 3 5.7381E-05 13068 20181213_JW_Orientia_Karp_1_2 205.12 146.49 373530000 127970000 57989000 47282000 24880000 18668000 0 96735000 0 3919 1077 3437 23881;23882;23883;23884;23885;23886 15570;15571;15572;15573;15574;15575;15576 15571 7 IDNNILTVEGHK Deamidation (NQ) 1352.6936 0.69359423 1077 Karp_00059 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 1 1 42.868 43.129 3 0.00050163 15356 20181213_JW_Orientia_Karp_1_1 151.7 81.884 254000000 120420000 94068000 19386000 480830 6974900 0 12673000 0 3920 1077 3437 23887;23888;23889;23890;23891;23892;23893;23894;23895 15577;15578;15579 15577 423;424 3 IDNNILTVEGHKDDQLEEK Unmodified 2209.0863 0.08625541 1077 Karp_00059 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 1 1 2 42.064 42.36 3;4 0.0034811 14015 20181213_JW_Orientia_Karp_1_3 90.379 63.23 1643400000 439090000 301470000 495600000 130730000 19640000 18496000 238370000 0 3921 1077 3438 23896;23897;23898;23899;23900;23901;23902;23903;23904;23905;23906 15580;15581;15582 15581 3 IDNNILTVEGHKDDQLEEK Deamidation (NQ) 2210.0703 0.070270995 1077 Karp_00059 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 43.883 44.175 3;4 0.0016332 15230 20181213_JW_Orientia_Karp_1_2 113.14 59.952 574550000 131460000 213050000 121370000 0 48973000 0 54879000 4818800 3922 1077 3438 23907;23908;23909;23910;23911;23912;23913;23914;23915;23916;23917 15583;15584;15585;15586;15587 15584 423;424 5 IDPNCADSYYIK Unmodified 1457.6497 0.6496805 1152;1259;1145;1447 Karp_00478;Karp_01552;Karp_00538;Karp_00993;Karp_02466 no no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 47.232 47.531 2 0.013161 17122 20181213_JW_Orientia_Karp_1_2 101.71 58.994 43989000 0 18013000 14149000 5562700 1492600 4772200 0 0 3923 1145;1152;1259;1447 3439 23918;23919;23920;23921;23922 15588;15589 15588 2 IDQADPELLELIEMEVR Oxidation (M) 2028.0085 0.0085223609 1176;1244 Karp_00632;Karp_00911 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 75.301 75.32 2 2.8871E-23 30754 20181213_JW_Orientia_Karp_2_1 217.39 155.58 3074300000 535930000 746790000 979900000 157690000 190140000 134310000 327250000 2261000 3924 1176;1244 3440 23923;23924;23925;23926;23927;23928;23929;23930 15590;15591;15592;15593;15594;15595;15596;15597;15598;15599 15595 741 10 IDQADPELLELIEMEVR Unmodified 2012.0136 0.013607739 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 1 76.03 76.027 2;3 1.114E-120 28595 20181213_JW_Orientia_Karp_3_1 330.04 258.96 1356000000 314880000 176040000 318240000 67911000 101750000 79549000 275380000 22237000 3925 1176;1244 3440 23931;23932;23933;23934;23935;23936;23937;23938;23939;23940;23941;23942;23943;23944 15600;15601;15602;15603;15604;15605;15606;15607;15608 15607 9 IDQIVQR Unmodified 870.49232 0.49231565 1110 Karp_00292 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 31.367 31.769 2 0.02303 9218 20181213_JW_Orientia_Karp_1_1 98.523 15.852 87837000 16745000 54852000 0 5906600 0 1737100 5756300 2840300 3926 1110 3441 23945;23946;23947;23948;23949;23950 15609;15610;15611;15612 15609 4 IDQLEGDHQLIQEALIFDNK Unmodified 2338.1805 0.18049015 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;A1L0V1;H7C5W8;H0YJW3;H0YJ11;Q5ZEZ4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 66.419 66.535 2 0.0070771 29285 20181213_JW_Orientia_Karp_1_2 102.58 71.429 17529000 4255300 8094100 5180000 0 0 0 0 0 3927 133 3442 23951;23952;23953 15613 15613 1 IDQNPFDQNNVK Unmodified 1430.679 0.6790068 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 43.717 43.981 2 0.00082042 15067 20181213_JW_Orientia_Karp_1_2 139.31 52.049 159650000 53203000 41175000 61378000 0 0 0 0 3894100 3928 1270 3443 23954;23955;23956;23957;23958 15614;15615;15616;15617 15615 4 IDQNPFDQNNVK Deamidation (NQ) 1431.663 0.66302238 1270 Karp_01078 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 45.897 46.175 2 2.038E-07 16331 20181213_JW_Orientia_Karp_1_2 190.57 96.165 220720000 58172000 65427000 45939000 16151000 13180000 10305000 0 11548000 3929 1270 3443 23959;23960;23961;23962;23963;23964;23965;23966;23967;23968;23969;23970;23971;23972;23973 15618;15619;15620;15621;15622;15623;15624;15625;15626 15619 686 9 IDQYQGADAVGLEEK Unmodified 1634.7788 0.77878042 478 Q59G46;K7ER96;V9HW51;B2R960;O43396;K7EML9 TXNL1;HEL-S-114 Thioredoxin-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 46.278 46.453 2 0.012966 16849 20181213_JW_Orientia_Karp_1_1 106.52 41.345 0 0 0 0 0 0 0 0 0 3930 478 3444 23974;23975 15627;15628 15627 2 IDTVPGIAHNK Unmodified 1163.6299 0.62987176 1283 Karp_01146 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 32.928 33.218 3 0.014052 9470 20181213_JW_Orientia_Karp_1_3 74.841 25.126 43844000 10871000 23276000 6599300 0 0 980610 2116500 0 3931 1283 3445 23976;23977;23978;23979;23980;23981 15629;15630;15631;15632;15633 15631 5 IDVDAPDIDIHGPDAK Unmodified 1689.821 0.82097959 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 52.234 52.551 3 0.016838 19171 20181213_JW_Orientia_Karp_2_3 97.223 71.241 101930000 0 0 0 39703000 32257000 29968000 0 0 3932 1782 3446 23982;23983;23984 15634;15635 15635 2 IDVFETDTEYHLEVELPGIK Unmodified 2346.1631 0.16310875 1077 Karp_00059 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 71.992 72.087 3 0.00032552 33013 20181213_JW_Orientia_Karp_1_2 111.09 83.051 590450000 136420000 39015000 171490000 50240000 73669000 22200000 65341000 32070000 3933 1077 3447 23985;23986;23987;23988;23989;23990;23991;23992 15636;15637;15638;15639;15640;15641;15642;15643;15644;15645 15638 10 IDVTAPDVSIEEPEGK Unmodified 1697.836 0.83596095 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 56.118 56.495 2 1.2353E-06 21181 20181213_JW_Orientia_Karp_2_1 174.39 120.13 156260000 61913000 51510000 0 42225000 0 0 0 610070 3934 1782 3448 23993;23994;23995;23996 15646;15647;15648 15648 3 IDVYGSIAELEK Unmodified 1335.6922 0.69219725 1123 Karp_00323 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 62.398 62.671 2 3.1733E-11 27262 20181213_JW_Orientia_Karp_1_1 229.82 154.77 169150000 56782000 17781000 39628000 5027900 25612000 17333000 0 6988200 3935 1123 3449 23997;23998;23999;24000;24001;24002;24003 15649;15650;15651;15652;15653;15654;15655 15649 7 IEAVAEPFIR Unmodified 1143.6288 0.62880913 1071 Karp_00042 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 54.446 54.72 2 0.0118 21942 20181213_JW_Orientia_Karp_1_2 103.55 26.489 44722000 10376000 14371000 16387000 3589000 0 0 0 0 3936 1071 3450 24004;24005;24006;24007 15656;15657;15658;15659 15657 4 IEDANLIPPVPDDKFQDLVDAVR Unmodified 2578.3279 0.32788266 186 A0A024R9Q1;P07996;A0PJG0;A8MZG1 THBS1 Thrombospondin-1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 72.492 72.575 3 0.0032763 29641 20181213_JW_Orientia_Karp_2_1 94.564 52.255 298520000 92699000 62807000 44000000 15162000 22136000 0 61720000 0 + 3937 186 3451 24008;24009;24010;24011;24012;24013 15660;15661;15662;15663 15662 4 IEDFLER Unmodified 920.46035 0.46034682 97 B5MCT8;C9JM19;B7Z732;A0A024R4M0;P46781;A5D904 RPS9 40S ribosomal protein S9 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 47.765 47.948 2 0.025342 17195 20181213_JW_Orientia_Karp_1_3 95.531 3.6243 16740000 6829000 6386200 3524500 0 0 0 0 0 3938 97 3452 24014;24015;24016 15664 15664 1 IEDLPTMVTLGNSFLHK Unmodified 1913.9921 0.99208444 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 67.644 67.872 3 0.0046355 29939 20181213_JW_Orientia_Karp_1_3 90.259 33.466 30554000 0 7953200 13399000 0 0 2196500 0 7005900 3939 1466;1549 3453 24017;24018;24019;24020;24021 15665;15666;15667;15668 15667 4 IEDLPTMVTLGNSFLHK Deamidation (NQ) 1914.9761 0.97610002 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 1 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 68.366 68.58 3 0.0066455 30665 20181213_JW_Orientia_Karp_1_2 99.915 48.91 23227000 11697000 4216200 5699400 0 0 0 0 1614100 3940 1466;1549 3453 24022;24023;24024;24025 15669;15670;15671 15670 991 3 IEDLPTMVTLGNSFLHK Oxidation (M) 1929.987 0.98699906 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 1 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 59.819 60.068 3 0.025464 22932 20181213_JW_Orientia_Karp_2_2 73.834 23.746 102580000 33995000 35009000 17433000 2598100 7212200 6334900 0 0 3941 1466;1549 3453 24026;24027;24028;24029;24030;24031 15672;15673 15673 1085 2 IEDLSQQAQLAAAEK Unmodified 1613.8261 0.82606496 213 F8VZJ2;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3-2;E9PAV3;F8W1N5;F8VNW4;B4DDI8 NACA;hCG_2016482 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 1 46.709 47.065 2 1.3379E-62 16238 20181213_JW_Orientia_Karp_2_3 281.32 10.281 399510000 73191000 53572000 51508000 66347000 35432000 56708000 29444000 33306000 3942 213 3454 24032;24033;24034;24035;24036;24037;24038;24039;24040;24041 15674;15675;15676;15677;15678;15679;15680;15681 15679 8 IEDVTPIPSDSTR Unmodified 1428.7096 0.70963822 1729 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 47.956 48.351 2 0.0025167 16555 20181213_JW_Orientia_Karp_2_1 121.68 55.245 288830000 0 94067000 84951000 34633000 12880000 13049000 1247900 47999000 3943 1729 3455 24042;24043;24044;24045;24046;24047;24048 15682;15683;15684;15685;15686 15684 5 IEEIIQEGK Unmodified 1057.5655 0.56554017 1437 Karp_02402 yes yes 0 0 0 0 By MS/MS 1 39.174 39.325 2 0.008696 11545 20181213_JW_Orientia_Karp_2_2 96.665 43.728 1816000 0 0 0 0 1816000 0 0 0 3944 1437 3456 24049 15687 15687 1 IEELFDTWQK Unmodified 1307.6398 0.63976774 1148 Karp_00506 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 59.829 60.079 2 0.0020778 25742 20181213_JW_Orientia_Karp_1_1 114.97 60.811 19999000 7928300 6527400 3237600 752470 1552800 0 0 0 3945 1148 3457 24050;24051;24052;24053;24054 15688 15688 1 IEEVPELPLVVEDK Unmodified 1607.8658 0.86580451 1660 Q59GY2;P36578;B4DFI6;Q53G74;H3BM89;B4DMJ2 RPL4 60S ribosomal protein L4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.437 68.644 2 1.5637E-12 30660 20181213_JW_Orientia_Karp_1_2 209.19 156.61 260600000 83299000 38534000 49624000 6720100 23339000 9056700 31263000 18760000 3946 1660 3458 24055;24056;24057;24058;24059;24060;24061;24062 15689;15690;15691;15692;15693;15694;15695;15696 15690 8 IEFPKPVIELAVEPK Unmodified 1707.9811 0.98110904 1094 Karp_00243 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 1 2 64.14 64.348 2;3 0.0041508 28371 20181213_JW_Orientia_Karp_1_1 147.75 98.42 513910000 105760000 83722000 75223000 9976900 166540000 38598000 171750 33924000 3947 1094 3459 24063;24064;24065;24066;24067;24068;24069;24070;24071;24072;24073;24074;24075;24076 15697;15698;15699;15700;15701;15702 15697 6 IEGEMQVPDVDIR Oxidation (M) 1515.7239 0.72390808 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1 1 49.096 49.469 2 4.0497E-05 17249 20181213_JW_Orientia_Karp_2_1 171.26 112.63 255290000 59405000 68838000 62495000 27642000 0 23172000 457850 13283000 3948 1782 3460 24077;24078;24079;24080;24081;24082;24083;24084;24085 15703;15704;15705;15706;15707;15708;15709;15710 15706 1401 8 IEGEMQVPDVDIR Unmodified 1499.729 0.72899346 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 56.844 57.166 2 0.00047736 23823 20181213_JW_Orientia_Karp_1_1 160.56 116.79 113000000 26166000 21027000 37209000 7694200 8556400 6928000 5420600 0 3949 1782 3460 24086;24087;24088;24089;24090;24091;24092 15711;15712 15711 2 IEGLYGYNVLLGVK Unmodified 1536.8552 0.85518025 1069 Karp_00038 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.669 69.814 2 1.2217E-11 31727 20181213_JW_Orientia_Karp_1_1 199.8 148.04 459690000 115820000 46809000 59004000 52877000 59146000 32553000 79114000 14374000 3950 1069 3461 24093;24094;24095;24096;24097;24098;24099;24100 15713;15714;15715;15716;15717;15718;15719;15720;15721 15713 9 IEGYEDQVLITEHGDLGNSR Unmodified 2244.0659 0.065854319 32 A8K0T9;A0A024R0E5;P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 50.961 51.231 3 0.018746 19832 20181213_JW_Orientia_Karp_1_1 94.61 75.211 115240000 83091000 0 29363000 0 0 0 0 2782300 3951 32 3462 24101;24102;24103 15722 15722 1 IEHWLSHGAQPTEK Unmodified 1631.8056 0.80560429 1248 Karp_00920 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 28.79 29.172 3;4 0.0112 6386 20181213_JW_Orientia_Karp_2_2 75.102 27.328 536100000 72609000 169880000 90411000 27590000 32927000 26166000 92818000 23698000 3952 1248 3463 24104;24105;24106;24107;24108;24109;24110;24111;24112;24113;24114;24115;24116;24117;24118 15723;15724;15725;15726;15727;15728 15725 6 IEIESFYEGEDFSETLTR Unmodified 2163.9848 0.98481003 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.733 70.833 2 3.0231E-101 32244 20181213_JW_Orientia_Karp_1_1 341.59 241.56 99598000 17458000 22135000 21536000 0 9898500 8934400 19635000 0 3953 1585 3464 24119;24120;24121;24122;24123;24124 15729;15730;15731;15732;15733;15734 15729 6 IEINFPAEYPFKPPK Unmodified 1788.9451 0.94505789 43 A8K4W8;A0A024R1A4;P68036-2;P68036;P68036-3;I1SRC5 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 61.965 62.218 3 0.0034883 26524 20181213_JW_Orientia_Karp_1_3 117.08 74.123 62419000 53966000 0 0 0 7695200 0 0 757630 3954 43 3465 24125;24126;24127;24128 15735;15736 15736 2 IEIPIIIILNQNDNVENYQK Unmodified 2382.2795 0.27947591 1253 Karp_00933 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 75.266 75.273 3 0.00041254 28110 20181213_JW_Orientia_Karp_3_1 108.14 78.455 32471000 14619000 2180000 4249900 493090 3986700 2145000 4796800 0 3955 1253 3466 24129;24130;24131;24132;24133;24134;24135 15737;15738;15739;15740 15740 4 IEISELNR Unmodified 972.52401 0.52400971 804;1657;995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2;CON__P35908;P35908 KRT1;KRT2 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.926 43.256 2 0.0011332 13969 20181213_JW_Orientia_Karp_3_1 180.93 47.113 1535200000 493850000 399190000 151100000 122390000 60582000 0 296920000 11120000 + 3956 995;996;804;1657 3467 24136;24137;24138;24139;24140;24141;24142;24143 15741;15742;15743;15744;15745;15746;15747;15748;15749;15750 15748 10 IELTTLNLEVMK Oxidation (M) 1418.7691 0.76906736 1449 Karp_02529 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.531 60.873 2 2.8187E-23 25568 20181213_JW_Orientia_Karp_1_3 236.69 140.66 39625000 0 14900000 8785000 3477400 8042900 3535100 884290 0 3957 1449 3468 24144;24145;24146;24147;24148;24149;24150 15751;15752;15753;15754;15755;15756;15757 15752 1052 7 IELTTLNLEVMK Unmodified 1402.7742 0.77415274 1449 Karp_02529 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 66.661 66.844 2 0.019394 29561 20181213_JW_Orientia_Karp_1_2 89.561 43.963 20958000 6741900 3578100 6432600 1124000 0 2809200 271940 0 3958 1449 3468 24151;24152;24153;24154;24155;24156 15758 15758 1 IENVITEISDIVEK Unmodified 1600.856 0.85596811 1328 Karp_01362 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 72.951 73.02 2 2.3795E-25 33668 20181213_JW_Orientia_Karp_1_2 234.49 148.3 262600000 50721000 57086000 58441000 6175500 21676000 17710000 42418000 8374900 3959 1328 3469 24157;24158;24159;24160;24161;24162;24163;24164 15759;15760;15761;15762;15763 15760 5 IEPSLQAAFIDYSNGK Deamidation (NQ) 1752.857 0.85703074 1362 Karp_01816 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1 1 65.323 65.517 2 0.00075253 28346 20181213_JW_Orientia_Karp_1_3 137.93 109.23 53666000 11126000 16310000 11766000 1315800 6337800 2378900 4431200 0 3960 1362 3470 24165;24166;24167;24168;24169;24170;24171;24172 15764;15765;15766 15766 822 3 IEQLSPFPFDLLLK Unmodified 1658.9283 0.92834519 562 B4DF00;E9PDF2;E9PCR7;Q02218-2;Q02218;B4E3E9;B4DH65;E9PFG7;B4DK55 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 76.675 76.676 2 0.013808 35752 20181213_JW_Orientia_Karp_1_3 92.19 45.394 25302000 9111200 4666800 4843600 907790 1113800 0 4006700 652540 3961 562 3471 24173;24174;24175;24176;24177;24178;24179 15767 15767 1 IESLSSQLSNLQK Unmodified 1445.7726 0.77257283 1613 P20700;E9PBF6;Q6DC98;B4DZT3 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 50.036 50.402 2 6.6012E-15 19004 20181213_JW_Orientia_Karp_1_2 243.91 154.88 0 0 0 0 0 0 0 0 0 3962 1613 3472 24180;24181;24182 15768;15769;15770 15768 3 IESSSPTVVEGQTLDLNCVVAR Unmodified 2373.1846 0.18458925 195 A0A024RAB6;P98160;Q59EG0;Q5SZI9 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS 2 62 62.198 2;3 7.7529E-09 26389 20181213_JW_Orientia_Karp_1_3 169.6 130.36 26931000 0 0 26931000 0 0 0 0 0 3963 195 3473 24183;24184 15771;15772 15771 2 IESSSSHVAEGETLDLNCVVPGQAHAQVTWHK Unmodified 3485.6634 0.66338009 195 A0A024RAB6;P98160;Q59EG0;Q5SZI9 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 49.683 49.972 4 0.0030898 18719 20181213_JW_Orientia_Karp_1_2 56.914 32.4 44891000 7623800 17398000 13538000 0 0 0 0 6332000 3964 195 3474 24185;24186;24187;24188 15773;15774 15773 2 IETGEPYILFIDTVNK Unmodified 1850.9666 0.96658119 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 72.968 73.042 3 1.6494E-19 33645 20181213_JW_Orientia_Karp_1_1 229.48 149.59 0 0 0 0 0 0 0 0 0 3965 1133 3475 24189;24190 15775;15776 15775 2 IETTSYGK Unmodified 897.44436 0.4443624 1108 Karp_00286 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.23 24.562 2 0.0042232 5179 20181213_JW_Orientia_Karp_2_1 134.81 78.301 331680000 18311000 152770000 28453000 21134000 33938000 16522000 31815000 28743000 3966 1108 3476 24191;24192;24193;24194;24195;24196;24197;24198 15777;15778;15779;15780;15781;15782;15783;15784 15780 8 IEVHQEEVVAEVHVSTVEER Unmodified 2317.155 0.15500368 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 45.333 45.612 3;4 0.0081569 15124 20181213_JW_Orientia_Karp_2_1 77.66 48.217 113780000 14735000 23946000 28557000 21984000 16596000 3853000 0 4110600 3967 1764 3477 24199;24200;24201;24202;24203;24204;24205;24206;24207 15785;15786;15787;15788 15785 4 IEVIEIMTDR Unmodified 1217.6326 0.63257388 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q6IPF2;Q0VAC0;F8VZ49;A0A024RC46;H0YH80;A0A024QZ98;Q32P51;F8VTQ5;F8VYN5 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 61.345 61.618 2 7.4564E-07 24022 20181213_JW_Orientia_Karp_2_1 189.18 98.469 126350000 35595000 18798000 22489000 3632500 21613000 18044000 0 6177100 3968 209 3478 24208;24209;24210;24211;24212;24213;24214 15789;15790;15791;15792;15793;15794;15795;15796 15793 8 IEVIEIMTDR Oxidation (M) 1233.6275 0.6274885 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q6IPF2;Q0VAC0;F8VZ49;A0A024RC46;H0YH80;A0A024QZ98;Q32P51;F8VTQ5;F8VYN5 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 2 51.543 51.94 2 4.6363E-06 18780 20181213_JW_Orientia_Karp_2_3 170.47 90.24 126610000 29254000 18399000 0 28619000 18352000 24015000 6020400 1954800 3969 209 3478 24215;24216;24217;24218;24219;24220;24221;24222 15797;15798;15799 15798 163 3 IEVSQLLK Unmodified 928.55933 0.55933258 1779 Q08722-2;Q08722-3;Q08722-4;Q08722 CD47 Leukocyte surface antigen CD47 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 51.949 52.275 2 0.0069761 18800 20181213_JW_Orientia_Karp_2_2 113.5 15.041 13183000 0 4413100 0 3979400 1967900 2822600 0 0 3970 1779 3479 24223;24224;24225;24226 15800;15801;15802 15801 3 IEYQFFEDR Unmodified 1245.5666 0.5666028 408 A8KAK1;Q9NYU2-2;Q9NYU2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 55.553 55.736 2 0.0045825 22576 20181213_JW_Orientia_Karp_1_2 106.2 39.631 22252000 10731000 4504300 7016500 0 0 0 0 0 3971 408 3480 24227;24228;24229 15803;15804 15804 2 IEYVSTK Unmodified 838.44363 0.44363412 1160 Karp_00595 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 30.273 30.623 2 0.024832 8666 20181213_JW_Orientia_Karp_1_1 96.19 11.275 72110000 32712000 8547500 14282000 5594900 6016800 0 4957000 0 3972 1160 3481 24230;24231;24232;24233;24234;24235 15805;15806 15805 2 IFAPNHVVAK Unmodified 1094.6237 0.62366417 443 M0R3D6;M0R1A7;B4DM94;M0R117;B4DM74;B4DUV3;Q53HD3;B2R4C0;Q02543;Q32XH3 RPL18A 60S ribosomal protein L18a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 32.973 33.273 3 0.01091 10032 20181213_JW_Orientia_Karp_1_1 78.264 25.327 41285000 7602900 22604000 8925200 0 0 0 2153000 0 3973 443 3482 24236;24237;24238;24239 15807;15808;15809;15810 15807 4 IFAQDGEGQR Unmodified 1119.5309 0.530886 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 30.063 30.49 2 0.00093054 8176 20181213_JW_Orientia_Karp_1_2 125.71 51.412 48171000 0 17573000 21571000 0 0 0 4836300 4189700 3974 1520 3483 24240;24241;24242;24243;24244;24245;24246 15811;15812;15813;15814 15812 4 IFCCHGGLSPDLQSMEQIR Oxidation (M) 2263.0184 0.018392316 1724 V9HW04;P62140;Q9UPN1;B7ZB67;B4DJ75;F8VYE8;A0A024RBP2;F8W0W8;B3KXM2;P62136-3;P36873;P62136;P36873-2;P62136-2;E7ETD8;F8VR82;F8W1A0 HEL-S-80p;PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 1 1 47.298 47.497 3 0.015705 16945 20181213_JW_Orientia_Karp_1_3 78.228 47.635 5030200 0 0 5030200 0 0 0 0 0 3975 1724 3484 24247;24248 15815;15816 15816 1352 2 IFDDGDFTYIYFR Unmodified 1670.7617 0.76167379 1213 Karp_00875 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.772 73.805 2 1.117E-24 27442 20181213_JW_Orientia_Karp_3_1 227.94 162.1 135620000 37242000 35082000 43603000 3370600 8588500 0 7734500 0 3976 1213 3485 24249;24250;24251;24252;24253;24254 15817;15818;15819;15820;15821;15822 15822 6 IFDLIAR Unmodified 846.49634 0.49633839 1421 Karp_02305 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 57.963 58.225 2 0.011563 24650 20181213_JW_Orientia_Karp_1_1 119.57 44.255 53289000 23374000 0 15700000 0 3690300 9251400 0 1274400 3977 1421 3486 24255;24256;24257;24258;24259;24260;24261 15823;15824;15825;15826;15827;15828 15823 6 IFEDIPTLEDLAETLK Unmodified 1845.9612 0.96116146 838 D3DUZ3;Q16666-2;Q16666;Q16666-3;Q16666-6;H3BM18;X6RHM1;H3BVE6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 76.31 76.309 2 0.00016362 35925 20181213_JW_Orientia_Karp_1_2 145.83 34.309 75512000 17911000 17971000 30751000 0 0 0 8878400 0 3978 838 3487 24262;24263;24264;24265 15829;15830;15831;15832 15830 4 IFEGYGATEASPVISANTPMHDKPDTVGR Oxidation (M) 3075.4608 0.46076411 1196 Karp_00815 yes yes 0 0 1 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 48.274 48.62 4 0.002332 18176 20181213_JW_Orientia_Karp_1_1 62.678 44.38 131310000 32657000 19850000 28141000 13955000 15597000 13693000 455880 6965700 3979 1196 3488 24266;24267;24268;24269;24270;24271;24272;24273 15833;15834;15835;15836 15833 762 4 IFEMGPVFTL Oxidation (M) 1168.5838 0.58383277 1 B2YKU2;Q14XT3;H9E7F7;H9E7P8;H9E7W2;H9E7T7;X5C6M5;X5BKA4;X2CK15;X2C841;W8DFH5;W8DBX9;W8D4U9;W8D1X2;V9K571;V9JPM6;V9J3S1;V9J3C6;V9J128;U5Z9R9;U5Z487;U3LSI8;U3L556;T1SWS8;T1Q632;S4STI1;R9Y478;R9Y412;Q9B2U8;Q9B138;Q8WCW3;Q8HNR1;Q85KS0;Q7YCE6;Q7Y6N0;Q7Y6M3;Q7Y626;Q6VJJ3;Q6VJD8;Q6VIG7;Q6RQ80;Q6RNN7;Q6RKW8;Q6R0V6;Q5SB08;Q5SAP1;Q5SA98;Q5S971;Q4GVP5;Q4GQP0;Q4GHE1;Q4GCZ4;Q4GCG2;Q4GCC3;Q4F4V6;Q4EZD4;Q305H0;Q19MP7;Q15HH9;Q0Z7S0;Q0Z7J0;Q0Z7F1;Q09U41;Q06TE6;N0BMC4;L7XQ86;L7XMG0;K9M370;K7X9X2;J7FG21;I6UIH6;I6PZI4;I6PRP7;I6N6Q6;I3Q4M2;I3PYD8;I2E7Z7;H9T3W9;H9SA70;H9S868;H9RV93;H9RKS9;H9RJL3;H9RF01;H9RD12;H9RAX1;H9RA87;H9QLC8;H9QH59;H9Q9T5;H9PMX8;H9PDV6;H9MK30;H9M675;H9LMC2;H9E7D1;G9LKX8;G9LHJ5;G9LG51;G9LB98;G8JF18;G5D8Q5;G4W3U1;F2WJ84;F2WI31;F1CIN6;F1AZF2;F1AZ87;E7E4E0;E7CNQ9;E5FWC0;E5EWR3;E5EWL4;E5EWG2;E5E1A6;E5E079;E5DZN4;E2JFC4;D2IKF4;D1G421;C8YBL1;C8Y3Q5;C8Y3G4;C8XWJ6;C5H6M7;C5H6M5;C5H6M4;C5H6M3;C5H6L3;B5M7M0;B3DE06;B2XL43;B2XIR3;B2XHT9;B2WRY8;B2CB37;B1W855;A7LFA2;A7LF11;A6ZFK3;A6ZF47;A6ZEU4;A6Z3M5;A6YW54;A1Z455;A0SA07;A0S3T1;A0A068IXK4;A0A068BY99;A0A059SAH5;A0A059S242;A0A059RZV1;A0A059RX67;A0A059RVU8;A0A059RTZ6;A0A059RSL1;A0A059RR09;A0A059RQT0;A0A059RPV8;A0A059RNV8;A0A059RNF8;A0A059RLH3;A0A059RKX5;A0A059RKP1;A0A059RJF0;A0A059RIZ2;A0A059RIQ8;A0A059RIK5;A0A059RI53;A0A059RHY7;A0A059RFY4;A0A059R1T0;A0A059QVH0;A0A059QTW9;A0A059QS59;A0A059QQA7;A0A059QPT6;A0A059QPR4;A0A059QPE9;A0A059QLX8;A0A059QI72;A0A023QZ25;P00403;H9E7E4;H9E7B8;H9E779;S4UQ76;Q9B1F9;Q8HQB7;Q4EYL1;L7YNE0;H9T056;H9SYF8;H9RJM6;H9E792;G9LAZ4;G9C8L9;E9LAG1;E2JJS5;D7NUN3;D5M8T1;D3YPT7;D2K1G3;C9D661;B2XPS3;B0Z6W4;A7LDC6;A6Z6E8;A6YXV0;A6YWD1;A4ZKZ0;A1Z4V2;A0S0W7;A0A068BTX8;A0A068BST3;A0A068BP29;A0A059QTV7;A0A023QRX9;A0A023QCZ2;V9JD22;Q8HNR6;Q7YEH2;Q0Z7K3;Q0Z7D8;L7NVC9;G8JE99;G5D8N2;G5D8K6;G5D8J3;G5D8C8;G5D863;G4W3M6;C5H6M8;B3GUF3;A0A059RRG1;A0A059RQ10;A0A059RHR2;A0A059RS76;A0A059RMS5;A0A059QFD5 COX2;COII;MT-CO2 Cytochrome c oxidase subunit 2 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 75.86 75.86 2 0.0096717 35548 20181213_JW_Orientia_Karp_1_1 90.37 50.267 27029000 10556000 0 10001000 0 1454300 0 5016800 0 3980 1 3489 24274;24275;24276;24277 15837;15838 15837 0 2 IFETEVTK Unmodified 965.50696 0.50696266 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.922 39.238 2 0.0041666 11883 20181213_JW_Orientia_Karp_2_1 145.34 59.982 215830000 49711000 53481000 62143000 16346000 14190000 0 19964000 0 3981 1118 3490 24278;24279;24280;24281;24282;24283 15839;15840;15841;15842;15843;15844 15842 6 IFFAGDTIPK Unmodified 1107.5964 0.59644637 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 56.764 57.121 2 6.933E-05 23846 20181213_JW_Orientia_Karp_1_1 151.44 78.193 233200000 56896000 27559000 99292000 5132800 9205300 11681000 17863000 5574100 3982 1520 3491 24284;24285;24286;24287;24288;24289;24290;24291 15845;15846;15847;15848;15849;15850;15851 15845 7 IFGLLMGTLQK Unmodified 1219.6999 0.69986558 398 A8K964;Q9H307-2;Q9H307 PNN Pinin yes no 0 0 0 0 By MS/MS By matching 1 1 68.909 69.034 2 0.016719 31144 20181213_JW_Orientia_Karp_1_1 120.87 91.707 2971400 1577100 1394300 0 0 0 0 0 0 3983 398 3492 24292;24293 15852 15852 0 IFGSVPR Unmodified 774.43882 0.43882351 1232 Karp_00899 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 38.698 39.005 2 0.010722 11692 20181213_JW_Orientia_Karp_2_1 143.02 86.472 227560000 68904000 79694000 58136000 10767000 548470 82112 9427200 0 3984 1232 3493 24294;24295;24296;24297;24298;24299;24300 15853;15854;15855;15856 15855 4 IFGVTTLDIVR Unmodified 1232.7129 0.71287311 96 Q0QF37;Q75MT9;Q6FHZ0;A0A024R4K3;P40926;G3XAL0;B3KTM1 MDH2 Malate dehydrogenase;Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 67.42 67.596 2 0.015659 29967 20181213_JW_Orientia_Karp_1_2 87.806 29.13 32125000 14305000 3665300 3878400 0 4215200 1946900 0 4113300 3985 96 3494 24301;24302;24303;24304;24305;24306 15857;15858 15857 2 IFGYPSVLDNAAYGR Unmodified 1641.8151 0.81510635 1061 Karp_00005 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 65.476 65.592 2 0.02103 28415 20181213_JW_Orientia_Karp_1_3 84.188 55.612 26465000 8485600 8811800 9167600 0 0 0 0 0 3986 1061 3495 24307;24308;24309 15859;15860 15860 2 IFHTVTTTDDPVIR Unmodified 1613.8413 0.8413211 428 B0QYA5;O15371-2;O15371-3;O15371;B0QYA4;B4E1K8 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS By MS/MS 1 1 43.845 44.27 3 0.001747 14458 20181213_JW_Orientia_Karp_3_1 131.32 87.19 18813000 0 0 8660300 0 0 0 10152000 0 3987 428 3496 24310;24311 15861;15862 15862 2 IFINLPR Unmodified 871.52797 0.52797287 478 Q59G46;K7ER96;V9HW51;B2R960;O43396;B3KT45 TXNL1;HEL-S-114 Thioredoxin-like protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 55.375 55.641 2 0.027923 23011 20181213_JW_Orientia_Karp_1_1 92.191 22.758 54060000 19235000 7691200 7703500 1127900 5910300 12391000 0 0 3988 478 3497 24312;24313;24314;24315;24316;24317 15863 15863 1 IFINNEWHDSVSGK Unmodified 1644.7896 0.78961988 1538 V9HW83;V9HVX6;P00352;B4DXX3;Q5SYQ9;Q5SYQ8;Q5SYQ7;Q59EJ0 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 45.719 45.968 3 0.012111 16609 20181213_JW_Orientia_Karp_1_1 76.073 32.478 88681000 36351000 22062000 25636000 4632500 0 0 0 0 3989 1538 3498 24318;24319;24320;24321;24322 15864;15865;15866 15864 3 IFINVAR Unmodified 831.49667 0.49667274 1256 Karp_00936 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 46.51 46.693 2 0.012178 16628 20181213_JW_Orientia_Karp_1_2 117.7 38.245 90298000 42543000 28129000 19626000 0 0 0 0 0 3990 1256 3499 24323;24324;24325 15867;15868 15868 2 IFNLSENIIK Deamidation (NQ) 1190.6547 0.65468953 2053 yes no 0 1 0 0 By MS/MS By MS/MS By matching 2 2 1 41.281 41.562 3 0.0083944 14240 20181213_JW_Orientia_Karp_1_1 98.044 27.519 114150000 108070000 0 0 5958000 0 0 0 129970 + 3991 2053 3500 24326;24327;24328;24329;24330 15869;15870 15869 1248 2 IFQEQQKKWQQYR 3 Deamidation (NQ) 1811.8842 0.88424855 231 A0A024RBV3;Q8IZU0;Q8IZU0-2 FAM9B Protein FAM9B yes no 0 3 0 2 By MS/MS 1 48.514 49.124 3 0.034129 16119 20181213_JW_Orientia_Karp_3_2 53.6 6.3578 0 0 0 0 0 0 0 0 0 3992 231 3501 24331 15871 15871 1336;1337;1338 1 IFQNAPTDPTQDFSTQVAK Unmodified 2107.0222 0.02219859 1673 P45974-2;P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 55.493 55.767 2 0.00015045 22610 20181213_JW_Orientia_Karp_1_2 166.79 118.65 0 0 0 0 0 0 0 0 0 3993 1673 3502 24332;24333 15872;15873 15872 2 IFSFDGK Unmodified 812.40685 0.40685468 835 D3DSM4;D3DSM5;P39060-2;P39060-1;P39060;H7BXV5;H7C457;Q8NG19 COL18A1 Collagen alpha-1(XVIII) chain;Endostatin yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 47.981 48.156 2 0.020582 17547 20181213_JW_Orientia_Karp_1_2 101.69 57.16 37013000 7557500 23523000 4768500 0 1164100 0 0 0 3994 835 3503 24334;24335;24336;24337 15874;15875 15874 2 IFSHFFDFSSNIALK Unmodified 1771.8934 0.89335667 1313 Karp_01265 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 67.89 67.991 3 0.016719 27208 20181213_JW_Orientia_Karp_2_3 85.837 53.149 4679700 0 0 0 0 2328300 2351500 0 0 3995 1313 3504 24338;24339 15876;15877 15877 2 IFTASNVSSVPLPAENVTITAGQR Unmodified 2471.302 0.30200227 666 B4DZJ6;F8W726;B4DYY5;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 65.626 65.867 3 0.0053317 22941 20181213_JW_Orientia_Karp_3_1 65.901 39.978 22651000 5865100 11720000 0 436730 0 1700600 2928700 0 3996 666 3505 24340;24341;24342;24343;24344 15878;15879 15879 2 IFTNLSGSMAVDLASAK Oxidation (M) 1739.8764 0.87638598 1409 Karp_02226 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 56.45 56.731 2 0.0002119 23551 20181213_JW_Orientia_Karp_1_1 134.02 91.675 46865000 14765000 13959000 0 7878100 5949500 4312400 0 0 3997 1409 3506 24345;24346;24347;24348;24349;24350 15880;15881;15882;15883;15884 15880 1017 5 IFTNLSGSMAVDLASAK Unmodified 1723.8815 0.88147135 1409 Karp_02226 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 63.516 63.758 2 6.9407E-10 27323 20181213_JW_Orientia_Karp_1_3 189.33 114.49 18437000 9820300 5539200 0 370440 0 1700100 0 1006800 3998 1409 3506 24351;24352;24353;24354;24355;24356 15885;15886;15887 15887 3 IFTNLYGR Unmodified 982.52362 0.52361577 642 B4DUN7;G3V0I5;Q53G70;E5KNH5;P49821-2;P49821;E9PQP1;E9PPS5 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 47.485 47.759 2 0.018995 17062 20181213_JW_Orientia_Karp_1_3 89.296 43.578 24285000 5810600 10455000 6449700 1569500 0 0 0 0 3999 642 3507 24357;24358;24359;24360 15888 15888 1 IFTNTKPSIIDPK Unmodified 1472.8239 0.82388012 1454 Karp_02591 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 42.886 43.216 3 0.041363 13907 20181213_JW_Orientia_Karp_3_1 73.082 28.317 121500000 39228000 41110000 17072000 6283100 2293800 0 14830000 681920 4000 1454 3508 24361;24362;24363;24364;24365;24366;24367 15889 15889 1 IFVEESIYDEFVR Unmodified 1644.8035 0.80353861 1538 V9HW83;V9HVX6;P00352;B4DXX3;B4DDF8 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 71.384 71.447 2 0.0067218 32576 20181213_JW_Orientia_Karp_1_2 123.62 92.124 53279000 24702000 15353000 0 0 7781000 5442200 0 0 4001 1538 3509 24368;24369;24370;24371;24372 15890;15891;15892;15893 15891 4 IFVFEPPPGVK Unmodified 1228.6856 0.68559572 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 1 62.364 62.364 2 0.031032 27160 20181213_JW_Orientia_Karp_1_1 78.934 37.905 8309900 8309900 0 0 0 0 0 0 0 4002 1796 3510 24373 15894 15894 1 IFVGGLNPEATEEK Unmodified 1502.7617 0.76167379 604 D6R9P3;D6RD18;B4DMY3;D6RBZ0;Q53F64;Q99729-3;Q99729-2 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.153 52.498 2 4.3638E-25 19080 20181213_JW_Orientia_Karp_2_3 229 149.8 232480000 55530000 30580000 25282000 31493000 37184000 29623000 15616000 7173900 4003 604 3511 24374;24375;24376;24377;24378;24379;24380;24381 15895;15896;15897;15898;15899 15897 5 IFVGGLSPDTPEEK Unmodified 1487.7508 0.75077476 254 H0YA96;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103-4;Q14103-3;Q14103-2;Q14103;B4E0W4;D6RAF8;D6RF44 HNRNPD;HNRPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 52.981 53.326 2 1.2766E-17 18372 20181213_JW_Orientia_Karp_3_2 218.07 152.91 792250000 139830000 143490000 158240000 112570000 92807000 100260000 27074000 17982000 4004 254 3512 24382;24383;24384;24385;24386;24387;24388;24389 15900;15901;15902;15903;15904;15905;15906 15906 7 IFYDYGFDNAANVDK Unmodified 1750.7839 0.7838658 1367 Karp_01877 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 60.151 60.481 2 4.6103E-09 25910 20181213_JW_Orientia_Karp_1_1 203.74 101.21 59587000 19956000 11291000 11860000 2904400 5131100 0 5963900 2481200 4005 1367 3513 24390;24391;24392;24393;24394;24395;24396;24397 15907;15908;15909;15910;15911;15912 15907 6 IFYPEIEEVQALDDTER Unmodified 2065.9844 0.9844161 1652 P33316;H0YNW5;H0YKC5;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 68.672 68.939 2 0.012597 30624 20181213_JW_Orientia_Karp_1_3 90.229 57.799 13078000 0 0 5954000 0 0 0 4838800 2284900 4006 1652 3514 24398;24399;24400 15913 15913 1 IGAEVYHNLK Unmodified 1142.6084 0.60840804 93 A0A024R4F1;P06733;K7EM90;E2DRY6;P06733-2;A4UCS8 ENO1 Alpha-enolase;Enolase yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 32.716 33.017 3 0.026209 8344 20181213_JW_Orientia_Karp_2_2 83.998 25.299 55016000 10110000 4461300 0 0 33361000 2169000 4914500 0 4007 93 3515 24401;24402;24403;24404;24405 15914;15915 15914 2 IGCNTCVCR Unmodified 1138.4682 0.46816786 1466 L8E853 VWF yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 25.943 26.233 2 0.0032813 6325 20181213_JW_Orientia_Karp_1_3 112.41 69.287 10985000 5148500 1999600 2475000 0 0 0 0 1361700 4008 1466 3516 24406;24407;24408;24409 15916;15917 15916 2 IGDLQAFQGHGAGNLAGLK Unmodified 1865.9748 0.97479489 687 B4E2Z3;F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;A0A024R599;H0YFS2 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 51.506 51.689 3 0.0038962 19818 20181213_JW_Orientia_Karp_1_2 88.19 45.67 46236000 14813000 19704000 11719000 0 0 0 0 0 4009 687 3517 24410;24411;24412 15918 15918 1 IGEHTPSALAIMENANVLAR Unmodified 2106.0892 0.089172718 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;H3BPS8;H3BR04;A4UCS9;H3BU78;A4UCT0 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS 1 62.388 62.388 3 0.00041131 27156 20181213_JW_Orientia_Karp_1_1 108.18 64.923 68811000 68811000 0 0 0 0 0 0 0 4010 1546 3518 24413 15919 15919 1 IGEIIYK Unmodified 834.48511 0.485105 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 42.469 42.736 2 0.021315 14346 20181213_JW_Orientia_Karp_1_2 100.74 21.288 1791600000 528390000 572670000 450550000 0 79681000 73268000 87000000 0 4011 1074 3519 24414;24415;24416;24417;24418;24419;24420 15920;15921;15922;15923;15924;15925 15921 6 IGEQHLTAELTTTDSSTK Unmodified 1930.9484 0.94836495 1141 Karp_00453 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 40.405 40.722 3 0.027047 13785 20181213_JW_Orientia_Karp_1_1 78.917 49.96 81598000 20164000 22179000 22490000 5433100 0 1739000 9592600 0 4012 1141 3520 24421;24422;24423;24424;24425;24426 15926;15927 15926 2 IGEYSLYR Unmodified 999.50255 0.50254598 1446 Karp_02445 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 43.846 44.162 2 0.013215 15565 20181213_JW_Orientia_Karp_1_1 98.629 36.522 106260000 28676000 24066000 25711000 18328000 0 510650 8970100 0 4013 1446 3521 24427;24428;24429;24430;24431;24432;24433 15928;15929;15930;15931;15932 15928 5 IGFPWSEIR Unmodified 1103.5764 0.57637963 1630;457 V9HWC0;P26038;Q6PJT4;Q6PKD3;Q05CU6;B0YJ88;P35241;P35241-5;Q9UJZ6;Q9UK20;B7Z2S7;P35241-4;Q9UJU1;Q9UJZ2;Q9UJZ7;E7EQR4;Q6NUR7;B2R6J2;P15311;B7Z437;B7Z5V2;V9HW42;J7M2B1 HEL70;MSN;RDX;VIL2;EZR;HEL-S-105;EZR-ROS1 Moesin;Radixin;Ezrin;Tyrosine-protein kinase receptor no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 63.975 64.237 2 0.0037009 25011 20181213_JW_Orientia_Karp_2_2 110.41 51.491 53621000 0 0 16294000 490590 25749000 6239600 0 4847200 4014 1630;457 3522 24434;24435;24436;24437;24438;24439;24440;24441 15933;15934;15935;15936;15937 15935 5 IGGATYQVPSPVNELR Unmodified 1699.8893 0.88933392 1093 Karp_00242 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 55.606 55.986 2 9.8238E-20 20812 20181213_JW_Orientia_Karp_2_1 217.12 125.47 884590000 268670000 340570000 0 109730000 80442000 72427000 4441600 8321900 4015 1093 3523 24442;24443;24444;24445;24446;24447;24448 15938;15939;15940;15941;15942;15943 15940 6 IGGATYQVPSPVNELR Deamidation (NQ) 1700.8733 0.87334951 1093 Karp_00242 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 1 2 1 1 2 56.879 57.184 2 6.2371E-14 23434 20181213_JW_Orientia_Karp_1_1 208.82 147.17 195760000 63482000 50728000 40619000 17110000 14766000 6912400 1826000 320130 4016 1093 3523 24449;24450;24451;24452;24453;24454;24455;24456;24457;24458;24459;24460;24461 15944;15945;15946;15947;15948;15949;15950 15944 442 7 IGGDAATTVNNSTPDFGFGGQK 2 Deamidation (NQ) 2154.9706 0.97055695 1930;645 B4DV73;Q92945;M0R0I5 KHSRP Far upstream element-binding protein 2 no no 0 2 0 0 By MS/MS By MS/MS 1 1 57.472 57.647 2 0.020889 24216 20181213_JW_Orientia_Karp_1_1 84.62 51.392 0 0 0 0 0 0 0 0 0 4017 645;1930 3524 24462;24463 15951;15952 15951 221;222 2 IGGDAATTVNNSTPDFGFGGQK Unmodified 2153.0025 0.0025257806 1930;645 B4DV73;Q92945;M0R0I5 KHSRP Far upstream element-binding protein 2 no no 0 0 0 0 By matching By MS/MS 1 1 55.283 55.557 2 8.9917E-06 22182 20181213_JW_Orientia_Karp_1_3 133.23 108.73 6199700 0 3363800 2835900 0 0 0 0 0 4018 645;1930 3524 24464;24465 15953 15953 1 IGGDAATTVNNSTPDFGFGGQK Deamidation (NQ) 2153.9865 0.98654137 1930;645 B4DV73;Q92945;M0R0I5 KHSRP Far upstream element-binding protein 2 no no 0 1 0 0 By MS/MS 1 57.604 57.802 2 0.013207 23661 20181213_JW_Orientia_Karp_1_3 107.69 84.831 0 0 0 0 0 0 0 0 0 4019 645;1930 3524 24466 15954 15954 221;222 1 IGGGIDVPVPR Unmodified 1078.6135 0.61349341 1930;645 B4DV73;Q92945;M0R0I5 KHSRP Far upstream element-binding protein 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.215 52.516 2 0.0005193 20485 20181213_JW_Orientia_Karp_1_2 140.45 95.424 127410000 48244000 20256000 13839000 17597000 6937100 20407000 0 129350 4020 645;1930 3525 24467;24468;24469;24470;24471;24472;24473 15955;15956;15957;15958;15959;15960 15956 6 IGGIFAFK Unmodified 851.49052 0.49052473 464 B2R761;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307;B4E0J3;H0YF61 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 56.773 57.204 2 0.0046668 19991 20181213_JW_Orientia_Karp_3_2 127.66 72.871 14086000 0 0 0 0 0 7688500 0 6397900 4021 464 3526 24474;24475;24476;24477 15961;15962;15963;15964 15964 4 IGGIGTVPVGR Unmodified 1024.6029 0.60292873 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;Q53G89;B4E2C5;Q16577;Q05639;Q14222;Q59GP5 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 45.952 46.224 2 1.8819E-07 16342 20181213_JW_Orientia_Karp_1_2 190.62 138.14 2316200000 549820000 799100000 785250000 42817000 57784000 62916000 0 18522000 4022 1746 3527 24478;24479;24480;24481;24482;24483;24484 15965;15966;15967;15968;15969;15970 15966 6 IGIEIIK Unmodified 784.50584 0.50584045 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 51.518 51.837 2 0.010819 19910 20181213_JW_Orientia_Karp_1_3 133.47 15.77 51464000 16900000 8533700 0 13984000 1973300 9912400 0 161010 4023 81 3528 24485;24486;24487;24488;24489;24490;24491 15971;15972 15972 2 IGIIGPNGAGK Deamidation (NQ) 996.5604 0.56039521 1315 Karp_01271 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 47.101 47.352 2 0.00816 15078 20181213_JW_Orientia_Karp_3_2 107.57 62.821 166680000 63532000 43322000 26851000 10886000 9017900 9764900 0 3310700 4024 1315 3529 24492;24493;24494;24495;24496;24497;24498;24499;24500 15973;15974;15975;15976;15977;15978;15979;15980 15980 741 8 IGIMPGHIHK Oxidation (M) 1117.6066 0.6066339 1120 Karp_00318;B7Z438;Q6IAL5;B2R8A1;A8K4W7;P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 0 0 1 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 25.047 25.405 3 0.020339 4866 20181213_JW_Orientia_Karp_3_2 80.438 32.015 63526000 2917800 23712000 3906600 8225400 4263200 2462200 7980200 10059000 4025 1120 3530 24501;24502;24503;24504;24505;24506;24507;24508 15981;15982;15983 15983 644 3 IGINHILNVMNNTISCPK Unmodified 2037.05 0.049950441 1127 Karp_00330 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 58.777 58.96 3 0.033438 24726 20181213_JW_Orientia_Karp_1_2 48.883 15.889 29368000 6449300 17844000 5075200 0 0 0 0 0 4026 1127 3531 24509;24510;24511 15984 15984 1 IGINNGYDGNLR Deamidation (NQ) 1305.6313 0.63132832 1118 Karp_00308 yes yes 0 1 0 0 By MS/MS By matching By matching By matching 2 1 1 1 46.544 46.809 2 0.0041036 18199 20181213_JW_Orientia_Karp_1_1 126.39 69.472 39985000 10155000 16026000 7622800 0 0 0 0 6181300 4027 1118 3532 24512;24513;24514;24515;24516 15985;15986 15986 495 2 IGIPYDLMENR Unmodified 1319.6544 0.65437195 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 62.558 62.775 2 0.0012514 26715 20181213_JW_Orientia_Karp_1_3 126.31 93.123 87305000 30943000 16811000 30172000 860400 4470500 4048100 0 0 4028 1318 3533 24517;24518;24519;24520;24521;24522 15987;15988;15989;15990 15989 4 IGIPYDLMENR Oxidation (M) 1335.6493 0.64928657 1318 Karp_01280 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 54.751 55.067 2 0.0064367 22081 20181213_JW_Orientia_Karp_1_2 99.788 63.88 315830000 36215000 93081000 95742000 28361000 34831000 23906000 0 3690800 4029 1318 3533 24523;24524;24525;24526;24527;24528;24529 15991;15992;15993;15994 15991 875 4 IGITNHDEYSLVR Unmodified 1515.7682 0.76815616 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 44.254 44.547 3 0.0023884 15464 20181213_JW_Orientia_Karp_1_2 105.66 69.885 54876000 11564000 20152000 11557000 2667100 1051300 1006800 6878000 0 4030 2016 3534 24530;24531;24532;24533;24534;24535;24536 15995;15996;15997 15996 3 IGKPHTVPCK Unmodified 1135.6172 0.61719858 973 H0YEN5;Q8J014;Q8N5L9;Q3KQT6;P15880;Q6IPX5;E9PPT0;Q8NI61;E9PMM9;I3L404;E9PM36 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 17.702 17.989 3 0.0065608 3101 20181213_JW_Orientia_Karp_1_3 100.25 66.039 4473100 0 2808100 1385000 55938 0 0 224050 0 4031 973 3535 24537;24538;24539;24540 15998;15999 15999 2 IGLFGGAGVGK Unmodified 974.55492 0.5549159 1341;1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W079;Karp_01515 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial no no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 51.597 51.887 2 0.016743 20490 20181213_JW_Orientia_Karp_1_1 87.181 40.187 51969000 13153000 17355000 20636000 0 0 0 0 824880 4032 1560;1341 3536 24541;24542;24543;24544 16000 16000 1 IGLFVLHYADK Unmodified 1274.7023 0.70230842 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS 1 56.283 56.633 3 0.035593 23139 20181213_JW_Orientia_Karp_1_2 69.672 42.96 0 0 0 0 0 0 0 0 0 4033 1252 3537 24545 16001 16001 1 IGLMEFGSQHSIAK Unmodified 1516.7708 0.77079869 1455 Karp_02592 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 48.328 48.578 3 0.016274 17585 20181213_JW_Orientia_Karp_1_3 70.089 43.441 14718000 4807200 0 5403200 2718300 0 1789300 0 0 4034 1455 3538 24546;24547;24548;24549 16002 16002 1 IGMGATLDIQRQQR Oxidation (M);3 Deamidation (NQ) 1604.7828 0.78281994 266 X6R5E5;B7Z6T7;A8K2S7;A0A024RE02;Q8NBM4-4;Q8NBM4-3;Q8NBM4-2;Q8NBM4 UBAC2;PHGDHL1 Ubiquitin-associated domain-containing protein 2 yes no 0 3 1 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 41.315 41.605 3 0.02819 13413 20181213_JW_Orientia_Karp_2_3 55.899 16.368 122390000 34138000 34278000 29412000 0 0 2799700 21766000 0 4035 266 3539 24550;24551;24552;24553;24554 16003 16003 1349;1350;1351 0 IGNDVPNDVNAIIEIPMNQQYIK Oxidation (M) 2613.3109 0.31085239 1452 Karp_02533 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 69.868 70.019 3 0.00038757 25196 20181213_JW_Orientia_Karp_3_1 109.65 66.53 65880000 9745500 7601400 0 6265200 10107000 2993300 23605000 5563100 4036 1452 3540 24555;24556;24557;24558;24559;24560;24561 16004;16005;16006;16007;16008 16007 1060 5 IGNDVPNDVNAIIEIPMNQQYIK Oxidation (M);Deamidation (NQ) 2614.2949 0.29486798 1452 Karp_02533 yes yes 0 1 1 0 By matching By MS/MS By matching 1 1 1 72.317 72.453 3 0.012426 29605 20181213_JW_Orientia_Karp_2_1 62.303 30.8 14698000 0 2866000 0 10437000 0 0 0 1395000 4037 1452 3540 24562;24563;24564 16009 16009 980 1060 1 IGNLQTDLSDGLR Unmodified 1400.726 0.72595699 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;O75369-5;O75369-4 FLNB Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 53.48 53.853 2 0.0014275 21708 20181213_JW_Orientia_Karp_1_1 152.4 98.648 116820000 27520000 32799000 39349000 6398200 7808200 0 1777000 1168500 4038 1520 3541 24565;24566;24567;24568;24569;24570;24571 16010;16011;16012;16013;16014;16015 16010 6 IGPLGLSPK Unmodified 880.5382 0.53820321 1647 P30050;Q59FI9;D3DS95;Q76P68 RPL12;hCG_21173;cICK0721Q.2 60S ribosomal protein L12 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.593 47.894 2 0.0011074 16223 20181213_JW_Orientia_Karp_2_2 130.22 73.043 143800000 40911000 51907000 16071000 11791000 8087400 9244700 0 5788400 4039 1647 3542 24572;24573;24574;24575;24576;24577;24578 16016;16017;16018;16019;16020;16021 16019 6 IGQLEEQLEQEAK Unmodified 1513.7624 0.76240208 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 47.913 48.229 2 2.0582E-58 17322 20181213_JW_Orientia_Karp_1_3 276.95 196.03 102070000 22753000 30359000 36010000 0 2695400 4029700 1081000 5140300 4040 944 3543 24579;24580;24581;24582;24583;24584;24585;24586 16022;16023;16024;16025;16026;16027 16024 6 IGQTMYNLLHNL Unmodified 1415.7231 0.72312022 1120 Karp_00318 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 65.838 66.054 2 2.4737E-40 28716 20181213_JW_Orientia_Karp_1_3 265.67 178.79 436970000 96387000 71368000 65718000 0 63078000 36944000 96364000 7108300 4041 1120 3544 24587;24588;24589;24590;24591;24592;24593 16028;16029;16030;16031;16032;16033 16030 6 IGQTMYNLLHNL Oxidation (M) 1431.718 0.71803484 1120 Karp_00318 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 56.295 56.714 2 9.2714E-08 21332 20181213_JW_Orientia_Karp_2_1 190.57 117.65 311880000 0 0 78886000 53432000 112630000 53079000 4901000 8955000 4042 1120 3544 24594;24595;24596;24597;24598;24599;24600;24601 16034;16035;16036;16037;16038;16039;16040;16041 16038 645 8 IGSTIDDTISK Unmodified 1148.5925 0.5924832 1799 Q14677;Q14677-3;Q14677-2 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 39.725 40.137 2 0.0042565 12511 20181213_JW_Orientia_Karp_3_1 108.43 71.24 37322000 0 14155000 7905200 5632000 0 0 9630500 0 4043 1799 3545 24602;24603;24604;24605 16042;16043 16043 2 IGSVEIDAVVPNDLVNAK Unmodified 1851.9942 0.99419293 1170 Karp_00624 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 66.379 66.479 2 0.00012684 29072 20181213_JW_Orientia_Karp_1_3 138.02 102.43 21699000 4756700 6330800 8393800 0 0 2217600 0 0 4044 1170 3546 24606;24607;24608;24609 16044;16045 16045 2 IGVHAFQQR Unmodified 1054.5672 0.56721192 1558 P05161 ISG15 Ubiquitin-like protein ISG15 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 29.283 29.646 3 0.0017712 8269 20181213_JW_Orientia_Karp_1_1 105.14 69.691 77323000 22998000 27216000 23837000 0 0 0 2373900 898830 4045 1558 3547 24610;24611;24612;24613;24614 16046;16047;16048;16049 16046 4 IGWPNAPILIQDFETLPR Unmodified 2079.1153 0.11531111 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 75.348 75.355 2 0.00019266 35181 20181213_JW_Orientia_Karp_1_1 133.48 93.461 203980000 53476000 57364000 59858000 2863800 7302300 3384500 19731000 0 4046 1466;1549 3548 24615;24616;24617;24618;24619;24620;24621 16050;16051;16052;16053;16054 16050 5 IGYLAQEPPLDLNK Unmodified 1569.8403 0.84025847 1315 Karp_01271 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.473 59.766 2 0.00015406 25548 20181213_JW_Orientia_Karp_1_1 191.29 132.31 540380000 176030000 81697000 127510000 47134000 58111000 42325000 7563600 0 4047 1315 3549 24622;24623;24624;24625;24626;24627;24628 16055;16056;16057;16058;16059;16060 16055 6 IHAGPITK Unmodified 835.49159 0.49158736 1735 V9HW24;P62333 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 22.523 22.891 2 0.020869 5241 20181213_JW_Orientia_Karp_1_1 87.754 37.73 8373100 3123600 3285200 0 703450 339370 0 794550 126890 4048 1735 3550 24629;24630;24631;24632;24633;24634 16061 16061 1 IHDANILLLTAFEDYEEK Unmodified 2133.063 0.063000772 1261 Karp_01021 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 71.524 71.602 2;3 0.0031738 32674 20181213_JW_Orientia_Karp_1_2 102.72 55.052 86351000 28538000 24898000 11492000 1015900 12212000 8195100 0 0 4049 1261 3551 24635;24636;24637;24638;24639;24640;24641 16062;16063;16064 16063 3 IHFPLATYAPVISAEK Unmodified 1755.956 0.95595693 1887;512 B3KT06;B3KPS3;P68363;P68363-2;P68366-2;P68366;B4DDU2;F8VVB9;C9JDS9;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;Q13748-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 60.576 60.878 2;3 0.0066156 23609 20181213_JW_Orientia_Karp_2_1 120.21 73.905 678190000 316670000 95300000 159310000 7326900 33216000 56627000 0 9737300 4050 512;1887 3552 24642;24643;24644;24645;24646;24647;24648;24649;24650;24651;24652 16065;16066;16067;16068;16069;16070;16071;16072 16069 7 IHNHFISYIK Unmodified 1270.6822 0.68224168 1160 Karp_00595 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1 1 1 33.487 33.844 3 0.0002449 10369 20181213_JW_Orientia_Karp_1_1 147.75 100.57 614030000 135290000 214340000 164770000 13687000 23346000 8751400 34148000 19700000 4051 1160 3553 24653;24654;24655;24656;24657;24658;24659;24660;24661 16073;16074;16075;16076;16077 16073 5 IHNHFISYIK Deamidation (NQ) 1271.6663 0.66625727 1160 Karp_00595 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.646 39.948 3 0.00091898 11858 20181213_JW_Orientia_Karp_3_2 128.03 77.583 110240000 37876000 19596000 39680000 0 3288700 1306000 7341200 1156200 4052 1160 3553 24662;24663;24664;24665;24666;24667;24668 16078;16079;16080;16081;16082;16083;16084 16084 549 7 IHNPDIMNEIISTK Oxidation (M) 1639.824 0.82395647 1380 Karp_02117 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 2 1 42.013 42.374 3 0.0031427 13183 20181213_JW_Orientia_Karp_2_2 122.78 74.316 74974000 34603000 0 21035000 0 2782600 0 16330000 223580 4053 1380 3554 24669;24670;24671;24672;24673;24674;24675 16085;16086;16087;16088 16086 979 3 IHNPDIMNEIISTK Unmodified 1623.829 0.82904185 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.837 52.107 3 0.0001696 20596 20181213_JW_Orientia_Karp_1_1 146.96 81.394 148300000 30589000 40741000 45979000 20580000 0 10409000 0 0 4054 1380 3554 24676;24677;24678;24679;24680 16089;16090;16091;16092;16093 16089 5 IHTSAATVVVLPEAEEVDVK Unmodified 2106.1209 0.12085 1437 Karp_02402 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.212 54.522 3 0.00013588 19921 20181213_JW_Orientia_Karp_2_2 117.53 89.814 180590000 40947000 0 42398000 27151000 32697000 34873000 0 2525000 4055 1437 3555 24681;24682;24683;24684;24685;24686;24687 16094;16095;16096;16097;16098;16099 16098 6 IHVSDQELQSANASVDDSR Unmodified 2069.9614 0.96138925 42 A0A024R1A3;P22314-2;P22314;B4DDE4;B4DL67;Q5JRR6;B3KUJ2 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 39.174 39.488 3 0.00054126 13169 20181213_JW_Orientia_Karp_1_1 103.41 86.749 65450000 24074000 28661000 0 0 0 2298600 10417000 0 4056 42 3556 24688;24689;24690;24691 16100 16100 1 IHWLPEEVPLADDIK Unmodified 1773.9301 0.93013611 1134 Karp_00400 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 63.93 64.122 3 0.00017018 27953 20181213_JW_Orientia_Karp_1_2 142.1 100.73 102340000 63343000 7033800 0 0 13549000 16475000 0 1941100 4057 1134 3557 24692;24693;24694;24695;24696 16101;16102;16103;16104;16105 16102 5 IIAATIENAQPILQIDNAR Unmodified 2063.1375 0.13750312 795 CON__P08779;P08779;B4DWU0;B4E2J5 KRT16 Keratin, type I cytoskeletal 16 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 65.434 65.659 2;3 5.5667E-13 22847 20181213_JW_Orientia_Karp_3_1 186.17 129.3 67053000 0 6677400 13015000 0 9090900 8352000 29918000 0 + 4058 795 3558 24697;24698;24699;24700;24701;24702;24703;24704 16106;16107;16108;16109 16109 4 IIAFVGSPVEDNEK Unmodified 1516.7773 0.77732386 1707 P55036;Q5VWC4;A6PVX3;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 55.814 56.191 2 0.007962 19606 20181213_JW_Orientia_Karp_3_2 108.9 63.024 46892000 18510000 0 10739000 5952300 0 4983200 5018500 1689400 4059 1707 3559 24705;24706;24707;24708;24709;24710 16110;16111;16112;16113 16113 4 IIALTGTKPQIEDITK Unmodified 1740.0033 0.003301049 1357 Karp_01763 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 50.916 51.262 3 0.041258 17447 20181213_JW_Orientia_Karp_3_1 70.889 51.311 151830000 17477000 36159000 39757000 20115000 8389600 13940000 14237000 1758900 4060 1357 3560 24711;24712;24713;24714;24715;24716;24717;24718 16114 16114 1 IIANKGEDSEQQSNDQSLVVNGVK Deamidation (NQ) 2572.2617 0.26165359 1107 Karp_00285 yes yes 0 1 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 2 2 1 40.463 40.794 3 1.4898E-14 13739 20181213_JW_Orientia_Karp_1_1 176.88 139.39 146880000 42229000 22612000 34933000 11118000 2382700 0 26598000 7003600 4061 1107 3561 24719;24720;24721;24722;24723;24724;24725;24726;24727;24728 16115;16116;16117;16118;16119 16115 463;464;470;1802;1803;1804 4 IIANKGEDSEQQSNDQSLVVNGVK 3 Deamidation (NQ) 2574.2297 0.22968476 1107 Karp_00285 yes yes 0 3 0 1 By MS/MS By MS/MS 1 1 46.657 46.912 3 0.013488 17019 20181213_JW_Orientia_Karp_1_1 66.732 47.183 0 0 0 0 0 0 0 0 0 4062 1107 3561 24729;24730 16120;16121 16120 463;464;470;1802;1803;1804 2 IIANKGEDSEQQSNDQSLVVNGVK 2 Deamidation (NQ) 2573.2457 0.24566918 1107 Karp_00285 yes yes 0 2 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 2 1 1 2 1 43.63 43.981 3 7.5858E-05 14719 20181213_JW_Orientia_Karp_2_1 119.94 91.529 94106000 23858000 23222000 22547000 4594800 5580700 376600 12692000 1234700 4063 1107 3561 24731;24732;24733;24734;24735;24736;24737;24738;24739;24740;24741;24742 16122;16123;16124;16125;16126;16127;16128;16129 16126 463;464;470;1802;1803;1804 8 IIANKGEDSEQQSNDQSLVVNGVK 4 Deamidation (NQ) 2575.2137 0.21370035 1107 Karp_00285 yes yes 0 4 0 1 By MS/MS 1 46.48 46.83 3 0.020589 16729 20181213_JW_Orientia_Karp_1_2 60.939 31.211 0 0 0 0 0 0 0 0 0 4064 1107 3561 24743 16130 16130 463;464;470;1802;1803;1804 1 IIANKGEDSEQQSNDQSLVVNGVK Unmodified 2571.2776 0.27763801 1107 Karp_00285 yes yes 0 0 0 1 By matching By matching By MS/MS 1 1 1 39.908 40.212 3 0.0083911 12033 20181213_JW_Orientia_Karp_3_2 72.916 35.747 1930100 0 0 0 0 569360 545880 0 814830 4065 1107 3561 24744;24745;24746 16131 16131 1 IIAYLEPK Unmodified 945.55352 0.55351892 1325 Karp_01349 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 47.748 48.03 2 0.0085537 17877 20181213_JW_Orientia_Karp_1_1 108.46 55.778 33389000 11241000 12417000 4569300 0 0 3311700 0 1850500 4066 1325 3562 24747;24748;24749;24750;24751;24752 16132;16133;16134;16135;16136 16132 5 IICNIDQIVTR Unmodified 1343.7231 0.72312022 1111 Karp_00293 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 54.187 54.456 2 0.0010938 21460 20181213_JW_Orientia_Karp_1_3 128.01 66.455 60562000 23463000 15408000 16456000 3779000 1456300 0 0 0 4067 1111 3563 24753;24754;24755;24756;24757 16137;16138;16139 16139 3 IIDAALR Unmodified 770.46504 0.46503826 991 H3BNX8;P20674;H3BRM5;H3BV69 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 39.003 39.31 2 0.026322 12578 20181213_JW_Orientia_Karp_1_2 94.262 1.5693 51516000 12282000 16486000 8656900 6459400 2701000 866510 4063700 0 4068 991 3564 24758;24759;24760;24761;24762;24763;24764 16140;16141 16140 2 IIDAIDFHK Unmodified 1070.576 0.57604528 1399 Karp_02188 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 44.754 45.089 2;3 0.00055526 15179 20181213_JW_Orientia_Karp_2_3 147.19 40.829 1389900000 296320000 898110000 137010000 12082000 0 31279000 15065000 0 4069 1399 3565 24765;24766;24767;24768;24769;24770;24771;24772;24773;24774 16142;16143;16144;16145 16144 4 IIDAIDFHKK Unmodified 1198.671 0.67100829 1399 Karp_02188 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 36.09 36.43 3 0.038845 9959 20181213_JW_Orientia_Karp_2_2 78.655 36.779 76594000 35608000 0 0 2829000 17048000 3085100 18024000 0 4070 1399 3566 24775;24776;24777;24778;24779 16146 16146 1 IIDAVILEDIQAAK Unmodified 1510.8607 0.86065956 1440 Karp_02409 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 68.394 68.606 2 9.6595E-12 30931 20181213_JW_Orientia_Karp_1_1 202.05 155.59 167140000 34250000 21631000 22889000 17516000 18328000 8213900 31133000 13174000 4071 1440 3567 24780;24781;24782;24783;24784;24785;24786;24787;24788 16147;16148;16149;16150;16151;16152;16153;16154 16147 8 IIDGQQVFINDIPLNR Unmodified 1853.9999 0.99994701 1194 Karp_00806 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 67.21 67.387 2 7.2086E-06 29613 20181213_JW_Orientia_Karp_1_3 193.51 143.88 208330000 60385000 53604000 42790000 0 18914000 10493000 0 22143000 4072 1194 3568 24789;24790;24791;24792;24793;24794 16155;16156;16157;16158;16159;16160 16157 6 IIDGQQVFINDIPLNR Deamidation (NQ) 1854.984 0.98396259 1194 Karp_00806 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 69.195 69.334 2 0.0055212 31364 20181213_JW_Orientia_Karp_1_1 106.13 67.892 21351000 4154700 8716600 6030100 0 0 0 0 2449700 4073 1194 3568 24795;24796;24797;24798 16161;16162 16161 611 1 IIDISDVFR Unmodified 1076.5866 0.58660996 173 Q9NVT8;Q9H9J7;A8K4A8;A0A024R8Z9;Q6PI48 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 0 0 0 0 By MS/MS 1 68.445 68.695 2 0.0062275 30714 20181213_JW_Orientia_Karp_1_2 101.54 63.381 851790 0 851790 0 0 0 0 0 0 4074 173 3569 24799 16163 16163 1 IIDPITFFK Unmodified 1092.6219 0.62193284 1106 Karp_00284 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 71.627 71.694 2 0.026905 32776 20181213_JW_Orientia_Karp_1_2 79.906 34.188 47067000 12662000 10885000 6831100 0 3263600 2586800 10839000 0 4075 1106 3570 24800;24801;24802;24803;24804;24805 16164 16164 1 IIDTPQFQR Unmodified 1116.5928 0.59275797 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-4;Q59H15 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 44.272 44.543 2 0.034294 15253 20181213_JW_Orientia_Karp_1_3 75.378 19.848 39689000 12072000 16405000 8717800 0 437970 0 2056300 0 4076 2015 3571 24806;24807;24808;24809;24810 16165 16165 1 IIDVFICK Unmodified 1006.5521 0.55213871 1321 Karp_01283 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 57.374 57.624 2 0.028867 21624 20181213_JW_Orientia_Karp_2_2 83.265 38.183 74583000 27323000 5376900 19161000 5763400 5551400 11408000 0 0 4077 1321 3572 24811;24812;24813;24814;24815;24816 16166;16167;16168 16167 3 IIDVVYNASNNELVR Deamidation (NQ) 1718.8839 0.88391419 1726 Q5JR95;Q5JR94;P62241 RPS8 40S ribosomal protein S8 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 1 58.95 59.205 2 0.00031919 24287 20181213_JW_Orientia_Karp_1_1 147.96 73.796 154460000 57248000 36541000 35301000 0 23536000 0 606840 1227600 4078 1726 3573 24817;24818;24819;24820;24821;24822;24823;24824;24825;24826;24827;24828 16169;16170;16171;16172;16173 16169 1136;1137;1138 5 IIEGINVVANAVGITLGPK Deamidation (NQ) 1878.0826 0.082614002 1296 Karp_01187 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 3 2 4 3 73.818 73.864 2;3 2.0005E-54 30380 20181213_JW_Orientia_Karp_2_3 262.73 212.26 2002100000 532630000 383080000 343500000 14692000 143610000 104030000 246590000 234020000 4079 1296 3574 24829;24830;24831;24832;24833;24834;24835;24836;24837;24838;24839;24840;24841;24842;24843;24844;24845;24846;24847;24848;24849;24850 16174;16175;16176;16177;16178;16179;16180;16181;16182;16183;16184;16185;16186;16187;16188;16189 16184 712 16 IIEGINVVANAVGITLGPK Unmodified 1877.0986 0.098598418 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 73.782 73.807 2;3 1.0351E-55 29809 20181213_JW_Orientia_Karp_2_2 270.74 252.16 6952800000 2240200000 1530300000 1842700000 26019000 416460000 166350000 728940000 1817300 4080 1296 3574 24851;24852;24853;24854;24855;24856;24857;24858;24859;24860;24861;24862;24863;24864 16190;16191;16192;16193;16194;16195;16196;16197;16198 16194 8 IIESDNNILK Unmodified 1157.6292 0.62920306 1443 Karp_02418 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 43.233 43.553 2 0.00015524 15252 20181213_JW_Orientia_Karp_1_1 146.79 35.046 255090000 65241000 62522000 52859000 18035000 8041500 20644000 25725000 2023000 4081 1443 3575 24865;24866;24867;24868;24869;24870;24871;24872 16199;16200;16201;16202;16203;16204 16199 5 IIESDNNILK Deamidation (NQ) 1158.6132 0.61321864 1443 Karp_02418 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.225 46.545 2 0.010212 16526 20181213_JW_Orientia_Karp_1_2 101.46 35.994 170170000 84183000 31658000 24440000 8840000 4092400 10653000 443580 5860300 4082 1443 3575 24873;24874;24875;24876;24877;24878;24879;24880 16205;16206 16206 961;962 2 IIETLTQQLQAK Unmodified 1384.7926 0.79257999 440 B1AQP2;Q9UHV9 PFDN2 Prefoldin subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.643 51.988 2 2.6101E-51 20056 20181213_JW_Orientia_Karp_1_2 275.13 153.63 409980000 51242000 70168000 66623000 56924000 71593000 45849000 39930000 7653500 4083 440 3576 24881;24882;24883;24884;24885;24886;24887;24888 16207;16208;16209;16210;16211;16212;16213;16214;16215 16209 9 IIFADISQLPVDPLYDLPAGYSK Unmodified 2534.3308 0.33084278 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 76.446 76.438 2;3 2.5523E-05 35597 20181213_JW_Orientia_Karp_1_3 122.46 74.842 140970000 31699000 25779000 38990000 6106700 9335800 7401000 21660000 0 4084 1149 3577 24889;24890;24891;24892;24893;24894;24895;24896;24897;24898;24899;24900;24901;24902 16216;16217;16218;16219;16220;16221;16222 16218 7 IIFEDDR Unmodified 906.4447 0.44469675 1687 P49773;D6RC06;D6REP8;D6RE99;D6RD60 HINT1 Histidine triad nucleotide-binding protein 1 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.544 43.837 2 0.02548 13968 20181213_JW_Orientia_Karp_2_2 95.352 42.716 145200000 36986000 37429000 6168200 8017800 49788000 5996000 817470 0 4085 1687 3578 24903;24904;24905;24906;24907;24908;24909 16223;16224;16225 16224 3 IIFEPLEAGAGFQFESK Unmodified 1881.9513 0.95126548 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 72.569 72.599 3 5.2089E-05 26756 20181213_JW_Orientia_Karp_3_1 140.77 101.26 102880000 27553000 0 17415000 0 9826400 10205000 37876000 0 4086 1094 3579 24910;24911;24912;24913;24914 16226;16227;16228;16229 16229 4 IIFGATFNPDLQGK Unmodified 1519.8035 0.80347903 1404 Karp_02212 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 63.339 63.609 2 1.1978E-25 25127 20181213_JW_Orientia_Karp_2_1 237.76 168.97 461290000 126700000 117100000 85230000 12069000 50978000 36565000 1599200 31044000 4087 1404 3580 24915;24916;24917;24918;24919;24920;24921;24922 16230;16231;16232;16233;16234;16235 16233 6 IIFVVGGPGSGK Unmodified 1129.6495 0.64954457 1540 Q6FGX9;Q53EY8;Q5T9B7;P00568 AK1 Adenylate kinase isoenzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.727 54.043 2 0.0025804 19880 20181213_JW_Orientia_Karp_2_3 117.7 77.346 59965000 21697000 11264000 10252000 4895000 2997300 8799000 0 60269 4088 1540 3581 24923;24924;24925;24926;24927;24928;24929 16236;16237;16238;16239;16240;16241;16242 16242 7 IIGAQLGTTWQEIAENINK Unmodified 2098.1059 0.10586864 1440 Karp_02409 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 1 2 1 72.384 72.454 2;3 1.3124E-54 29273 20181213_JW_Orientia_Karp_3_2 260.96 204.41 242560000 71614000 49482000 35604000 10847000 21546000 6605600 39244000 7622100 4089 1440 3582 24930;24931;24932;24933;24934;24935;24936;24937;24938;24939;24940;24941;24942 16243;16244;16245;16246;16247;16248;16249 16249 7 IIGAVDQIQLTQAQLEER Unmodified 2024.0902 0.090218576 1868 Q6NZI2;B4DPZ5;B4DNU9;Q6NZI2-2 PTRF Polymerase I and transcript release factor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 1 1 2 61.985 62.28 2;3 8.6988E-274 23211 20181213_JW_Orientia_Karp_3_2 416.46 316.73 1921600000 735010000 247920000 509760000 43101000 206870000 87473000 346480 91079000 4090 1868 3583 24943;24944;24945;24946;24947;24948;24949;24950;24951;24952;24953;24954;24955;24956;24957 16250;16251;16252;16253;16254;16255;16256;16257;16258;16259;16260;16261;16262;16263 16262 14 IIGEDLIIK Unmodified 1012.6168 0.61684746 1081;1151;1356;1083;1086 Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01685 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.638 58.938 2 0.00081465 24349 20181213_JW_Orientia_Karp_1_3 136.27 17.525 4921900000 1353700000 2177000000 554840000 140600000 0 692530000 3230000 0 4091 1081;1083;1086;1151;1356 3584 24958;24959;24960;24961;24962;24963 16264;16265;16266;16267;16268 16265 5 IIGEDLIIKR Unmodified 1168.718 0.71795849 1081;1151;1356;1083 Karp_00113;Karp_00131;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01685 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 2 1 1 49.739 49.988 2;3 0.010395 17642 20181213_JW_Orientia_Karp_2_3 104.42 58.265 76210000 16406000 7501000 16671000 22757000 3096600 9778400 0 0 4092 1081;1083;1151;1356 3585 24964;24965;24966;24967;24968;24969;24970;24971;24972 16269;16270;16271;16272 16272 4 IIGLDQVAGMSETALPGAFK Oxidation (M) 2033.0503 0.050327596 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.266 69.424 2 1.4289E-28 24790 20181213_JW_Orientia_Karp_3_1 211.49 158.67 324730000 70929000 51344000 81476000 12236000 13024000 8877900 63614000 23225000 4093 47 3586 24973;24974;24975;24976;24977;24978;24979;24980 16273;16274;16275;16276;16277;16278;16279;16280;16281 16280 39 9 IIGLDQVAGMSETALPGAFK Unmodified 2017.0554 0.055412974 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 73.232 73.276 2 2.7708E-37 33547 20181213_JW_Orientia_Karp_1_3 226.06 168.9 371170000 118490000 63590000 111520000 18573000 0 11641000 44632000 2717200 4094 47 3586 24981;24982;24983;24984;24985;24986;24987 16282;16283;16284;16285 16285 4 IIGNLLYYR Unmodified 1123.639 0.63897988 235 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS 1 57.036 57.386 2 0.0059692 23672 20181213_JW_Orientia_Karp_1_2 122.74 64.782 0 0 0 0 0 0 0 0 0 4095 235 3587 24988 16286 16286 1 IIGTPAQEYYHPGR Unmodified 1600.7998 0.79979063 1345 Karp_01521 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 40.399 40.669 3 0.028993 12663 20181213_JW_Orientia_Karp_3_1 59.796 15.18 138570000 57167000 30558000 27458000 0 4346400 0 19041000 0 4096 1345 3588 24989;24990;24991;24992;24993 16287 16287 1 IIGYGLPFPK Unmodified 1103.6379 0.63791725 610 B4DNN2;Q59E89;Q9UDY4 DNAJB4 DnaJ homolog subfamily B member 4 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 62.989 63.088 2 0.0042278 26868 20181213_JW_Orientia_Karp_1_3 104.21 57.838 8930500 6664300 0 2266300 0 0 0 0 0 4097 610 3589 24994;24995 16288;16289 16289 2 IIHHTSFQEMK Oxidation (M) 1385.6762 0.67617003 1690 Q53X91;P49888;H0Y8G0 SULT1E1 Sulfotransferase;Estrogen sulfotransferase yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 18.741 19.099 3 0.00047795 3825 20181213_JW_Orientia_Karp_1_2 136.49 95.38 36215000 9502400 7319700 8691400 2033900 1519000 1465800 3407600 2275600 4098 1690 3590 24996;24997;24998;24999;25000;25001;25002;25003 16290;16291;16292;16293;16294 16291 1303 5 IIHHTSFQEMK Unmodified 1369.6813 0.6812554 1690 Q53X91;P49888;H0Y8G0 SULT1E1 Sulfotransferase;Estrogen sulfotransferase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 1 1 24.716 25.031 3 0.011351 5714 20181213_JW_Orientia_Karp_1_3 79.07 38.574 17196000 287810 11227000 2862500 778260 666320 538860 0 834840 4099 1690 3590 25004;25005;25006;25007;25008;25009;25010;25011 16295;16296;16297;16298 16297 4 IIHQMGAVDAMEFLLDK Unmodified 1929.9692 0.9692405 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 68.026 68.228 3 0.00078077 30777 20181213_JW_Orientia_Karp_1_1 175.26 126.19 49827000 25482000 3693600 0 0 5744300 6399000 3478200 5029900 4100 1333 3591 25012;25013;25014;25015;25016;25017;25018 16299;16300;16301;16302;16303;16304 16299 6 IIHQMGAVDAMEFLLDK Oxidation (M) 1945.9642 0.96415513 1333 Karp_01373 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 62.828 63.018 3 0.0060703 24316 20181213_JW_Orientia_Karp_2_2 97.214 60.621 61316000 25761000 4071400 5940900 0 16516000 9027000 0 0 4101 1333 3591 25019;25020;25021;25022;25023 16305 16305 889 1 IIIDYYGK Unmodified 983.53278 0.53278348 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 49.527 49.828 2 0.02258 19060 20181213_JW_Orientia_Karp_1_1 86.794 42.986 160820000 27065000 50945000 25602000 28989000 10443000 15627000 0 2149000 4102 1149 3592 25024;25025;25026;25027;25028;25029;25030 16306 16306 1 IIIEGHCDER Unmodified 1240.587 0.58702067 1108 Karp_00286 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.473 28.831 3 0.01091 7400 20181213_JW_Orientia_Karp_1_2 90.149 42.921 196270000 57800000 50843000 15297000 1017100 7756200 8896400 19788000 34874000 4103 1108 3593 25031;25032;25033;25034;25035;25036;25037;25038 16307;16308;16309;16310;16311;16312;16313 16308 7 IIIPEIQK Unmodified 952.59572 0.59571809 600 B4DM31;P55060-4;P55060-3;P55060;B4DS32;B4DPS6;B4DUC5 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 59.811 60.087 2 0.035629 25779 20181213_JW_Orientia_Karp_1_1 79.469 6.2204 158730000 145240000 0 0 0 0 0 13493000 0 4104 600 3594 25039;25040 16314;16315 16314 2 IIIPESYQVVFK Unmodified 1434.8123 0.8122528 1442 Karp_02417 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 65.803 65.986 2 0.00055155 28658 20181213_JW_Orientia_Karp_1_3 147.3 92.219 5212600000 1650400000 1101200000 922360000 0 510710000 314650000 713320000 0 4105 1442 3595 25041;25042;25043;25044;25045;25046;25047;25048 16316;16317;16318;16319;16320;16321;16322;16323 16318 8 IIIPESYQVVFKPGK Unmodified 1716.9814 0.98144339 1442 Karp_02417 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 58.087 58.42 3 0.01788 22257 20181213_JW_Orientia_Karp_2_1 87.363 59.953 29544000000 5778100000 4554100000 6677900000 1225100000 3932200000 3205500000 176930 4171500000 4106 1442 3596 25049;25050;25051;25052;25053;25054;25055;25056 16324;16325;16326 16324 2 IIIPESYQVVFKPGKTLK Unmodified 2059.2081 0.20814887 1442 Karp_02417 yes yes 0 0 0 2 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 53.906 54.219 4 0.022495 19773 20181213_JW_Orientia_Karp_2_1 73.252 56.765 129760000 0 0 30155000 17689000 29004000 52908000 0 0 4107 1442 3597 25057;25058;25059;25060 16327;16328;16329 16327 3 IIIQRDSEQQMINIAR Oxidation (M);2 Deamidation (NQ) 1944.9939 0.99387535 580 X6R824;E7ERR3;B4DIQ2;Q5U5R9 HECTD2 Probable E3 ubiquitin-protein ligase HECTD2 yes no 0 2 1 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 24.692 24.982 4 0.027378 6199 20181213_JW_Orientia_Karp_1_1 50.806 18.419 490990000 34973000 0 344010000 0 604260 74328000 37076000 0 4108 580 3598 25061;25062;25063;25064;25065 16330 16330 1528;1529 355 1 IILDLISESPIK Unmodified 1339.7963 0.79626839 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2;B4DFF1;Q5T6W1 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.776 71.854 2 2.4972E-51 26173 20181213_JW_Orientia_Karp_3_1 275.63 208.67 291950000 96520000 40748000 50088000 1645800 14823000 13505000 74621000 0 4109 63 3599 25066;25067;25068;25069;25070;25071;25072 16331;16332;16333;16334;16335;16336;16337 16337 7 IILEAALQAAK Unmodified 1139.6914 0.69140938 1778 Q08378-2;Q08378;Q08378-4 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 55.989 56.408 2 0.0032301 21174 20181213_JW_Orientia_Karp_2_1 112.71 59.359 8962300 0 0 1874900 2758900 1568700 2562700 79913 117080 4110 1778 3600 25073;25074;25075;25076;25077;25078 16338;16339 16338 2 IILNSNDLSESIDR Unmodified 1587.8104 0.8104149 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 54.89 55.262 2 0.0005476 22688 20181213_JW_Orientia_Karp_1_1 145.14 80.317 47474000 17548000 10389000 11667000 2205000 4165000 0 830020 669870 4111 1058 3601 25079;25080;25081;25082;25083;25084;25085 16340;16341 16340 2 IILPDLTSR Unmodified 1026.6073 0.6073454 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.403 58.69 2 0.0012546 24835 20181213_JW_Orientia_Karp_1_1 128.12 52.908 1342500000 467140000 177850000 316810000 18551000 105140000 211300000 0 45738000 4112 1395 3602 25086;25087;25088;25089;25090;25091;25092 16342;16343;16344;16345;16346;16347;16348;16349 16342 8 IIMINLGQK Oxidation (M) 1044.6002 0.60015154 1378 Karp_02115 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.459 49.761 2 0.0051182 17366 20181213_JW_Orientia_Karp_2_1 101.69 45.569 109010000 38389000 16903000 16986000 16635000 8314500 10233000 0 1550600 4113 1378 3603 25093;25094;25095;25096;25097;25098;25099 16350;16351;16352;16353 16350 976 4 IINAGGIMLGK Oxidation (M) 1101.6216 0.62161526 1318 Karp_01280 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 2 47.927 48.267 2 0.00024377 15471 20181213_JW_Orientia_Karp_3_2 150.36 88.67 162750000 40749000 33281000 20465000 20151000 10888000 11054000 0 26168000 4114 1318 3604 25100;25101;25102;25103;25104;25105;25106;25107 16354;16355;16356;16357 16357 876 4 IINAGGIMLGK Unmodified 1085.6267 0.62670064 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 52.251 52.552 2 0.00029301 20386 20181213_JW_Orientia_Karp_1_3 150.36 87.055 155240000 48987000 33835000 43474000 10504000 4699100 13396000 0 343600 4115 1318 3604 25108;25109;25110;25111;25112;25113;25114 16358;16359;16360;16361;16362 16360 5 IINDLLQSLR Unmodified 1183.6925 0.69247202 1930 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 62.934 63.178 2 1.485E-08 24693 20181213_JW_Orientia_Karp_2_3 200.71 99.107 47527000 7025700 0 12924000 1711100 12198000 10891000 0 2776900 4116 1930 3605 25115;25116;25117;25118;25119;25120 16363;16364;16365;16366;16367 16366 5 IINEEEWIK Unmodified 1172.6077 0.60773933 1202 Karp_00823 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 50.103 50.403 2 0.0034815 18837 20181213_JW_Orientia_Karp_1_3 111.46 56.344 31463000 0 7474100 7969000 8443700 3933200 3643300 0 0 4117 1202 3606 25121;25122;25123;25124;25125 16368 16368 1 IINEPTAAAIAYGLDK Unmodified 1658.8879 0.88793694 1586;1585 V9HW22;P11142;E9PKE3;Q96IS6;B3KTV0;P11142-2;Q53HF2;B4E1Q1;E9PN89;E9PLF4;B4DTX2;E9PI65;A0A024R6B5;P54652;V9HWB4;P11021;B4DEF7 HEL-S-72p;HSPA8;HSPA2;HEL-S-89n;HSPA5 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 1 1 2 1 1 59.919 60.22 2;3 6.895E-10 20850 20181213_JW_Orientia_Karp_3_1 193.98 116.44 276230000 56809000 74575000 57740000 21184000 28898000 30324000 6307900 391480 4118 1586;1585 3607 25126;25127;25128;25129;25130;25131;25132;25133;25134;25135;25136 16369;16370;16371;16372;16373;16374 16374 5 IINLTQHCK Unmodified 1125.5965 0.59646314 1128 Karp_00331 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 2 2 1 28.226 28.502 2;3 0.0040497 7196 20181213_JW_Orientia_Karp_1_3 108.74 59.646 62830000 15850000 21735000 9155200 0 12231000 3633800 226390 0 4119 1128 3608 25137;25138;25139;25140;25141;25142;25143;25144;25145;25146 16375;16376;16377;16378 16377 4 IINNLYVHHTNQPLQVIEESMER Oxidation (M) 2792.3916 0.39156233 1352 Karp_01574 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 49.335 49.636 4 0.01077 17346 20181213_JW_Orientia_Karp_2_1 62.999 34.108 451290000 88996000 87103000 104010000 56014000 55802000 48388000 0 10982000 4120 1352 3609 25147;25148;25149;25150;25151;25152;25153 16379;16380;16381;16382;16383 16381 928 5 IINNLYVHHTNQPLQVIEESMER Oxidation (M);Deamidation (NQ) 2793.3756 0.37557791 1352 Karp_01574 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 52.118 52.428 4 0.00090108 20821 20181213_JW_Orientia_Karp_1_1 97.256 73.809 112940000 41282000 17735000 25507000 16954000 11310000 0 0 148030 4121 1352 3609 25154;25155;25156;25157;25158;25159 16384;16385;16386;16387;16388 16384 808;809;810;1843 928 5 IINNLYVHHTNQPLQVIEESMER Unmodified 2776.3966 0.39664771 1352 Karp_01574 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 1 1 1 55.602 55.93 3;4 0.00049174 22750 20181213_JW_Orientia_Karp_1_2 101.62 66.964 158460000 9384200 22327000 70010000 19286000 21355000 15845000 0 254710 4122 1352 3609 25160;25161;25162;25163;25164;25165;25166;25167;25168 16389;16390;16391;16392 16389 4 IINNLYVHHTNQPLQVIEESMER Deamidation (NQ) 2777.3807 0.38066329 1352 Karp_01574 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 58.582 58.882 4 0.0099502 22435 20181213_JW_Orientia_Karp_2_1 60.332 11.508 40052000 0 16190000 10280000 7131300 2224500 4226500 0 0 4123 1352 3609 25169;25170;25171;25172;25173 16393;16394;16395;16396 16395 808;809;810;1843 4 IINNQAQYQLSATHSSQDDEGNLSLLCQK Unmodified 3274.5524 0.55243266 1441 Karp_02410 yes yes 0 0 0 0 By MS/MS By matching 1 1 52.455 52.956 3 0.0025786 20770 20181213_JW_Orientia_Karp_1_2 58.08 35.738 11013000 0 7788100 0 0 0 0 3224600 0 4124 1441 3610 25174;25175 16397 16397 1 IINPNFVVNSNNK Unmodified 1471.7783 0.77832691 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 48.998 49.343 2 0.013301 18754 20181213_JW_Orientia_Karp_1_1 93.839 31.881 39071000 9322100 12366000 7348000 4601100 1447800 2232200 95127 1658000 4125 1169 3611 25176;25177;25178;25179;25180;25181;25182;25183 16398 16398 1 IINQLLQTK Unmodified 1069.6495 0.64954457 1332 Karp_01370 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.017 46.29 2 0.00015582 14598 20181213_JW_Orientia_Karp_3_2 185.72 111.46 387640000 112180000 119520000 92157000 18406000 13913000 21570000 0 9896900 4126 1332 3612 25184;25185;25186;25187;25188;25189;25190;25191 16399;16400;16401;16402;16403;16404 16404 6 IINSTGYSNDVFASFDLAR Unmodified 2089.0116 0.011633904 1299 Karp_01192 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 70.806 70.916 2 0.00023873 32280 20181213_JW_Orientia_Karp_1_2 127.05 74.553 28442000 5535500 7369100 6350800 0 3959800 0 5227200 0 4127 1299 3613 25192;25193;25194;25195;25196 16405;16406 16406 2 IINSTGYSNDVFASFDLAR Deamidation (NQ) 2089.9956 0.99564949 1299 Karp_01192 yes yes 0 1 0 0 By matching By MS/MS 1 1 70.631 70.788 2 0.030807 28253 20181213_JW_Orientia_Karp_3_2 81.619 49.189 4113500 0 0 0 0 0 1814000 0 2299500 4128 1299 3613 25197;25198 16407 16407 724 1 IIPGFMCQGGDFTR Unmodified 1597.7381 0.73811836 356;1888 V9HWF5;A8K486;P62937;B2RE56;B4DM82;F8WE65;C9J5S7;A0A075B759;Q9Y536;F5H284;Q71V99 HEL-S-69p;PPIA;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D no no 0 0 0 0 By MS/MS 1 60.921 60.921 2 0.042235 26226 20181213_JW_Orientia_Karp_1_1 95.417 65.086 0 0 0 0 0 0 0 0 0 4129 356;1888 3614 25199 16408 16408 1 IIQHQEGGIVK Unmodified 1220.6877 0.68772099 1205 Karp_00841 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 25.504 25.771 3 0.021566 6095 20181213_JW_Orientia_Karp_1_3 70.942 35.673 13869000 2184700 2789800 1292500 0 2823000 1367200 3411300 0 4130 1205 3615 25200;25201;25202;25203;25204;25205 16409;16410;16411;16412 16410 4 IIQLAVK Unmodified 783.52182 0.52182486 1413 Karp_02239 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.607 43.923 2 0.010973 14263 20181213_JW_Orientia_Karp_2_1 141.98 24.286 282150000 170090000 0 54217000 16638000 9994200 13416000 17190000 596770 4131 1413 3616 25206;25207;25208;25209;25210;25211;25212 16413;16414;16415;16416;16417 16414 5 IIQLLDDYPK Unmodified 1216.6703 0.67033959 229 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;P05388-2;G3V210;B4E3D5;Q8NHW5;F8VQY6;F8VRK7;F8VS58;F8VZS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 58.942 59.235 2 0.0012534 24517 20181213_JW_Orientia_Karp_1_3 119.22 63.762 91301000 35063000 24967000 17631000 3586800 4139400 5603400 311450 0 4132 229 3617 25213;25214;25215;25216;25217;25218;25219 16418;16419;16420;16421;16422;16423;16424 16420 7 IIQLNTGLIEVK Unmodified 1339.8075 0.80750177 1431 Karp_02388 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 61.762 62.192 2 4.506E-05 26406 20181213_JW_Orientia_Karp_1_3 187.16 118.78 7520400 0 6467300 0 0 0 0 0 1053100 4133 1431 3618 25220;25221;25222;25223 16425;16426;16427 16426 3 IIQNLQK Unmodified 855.5178 0.51780212 1160 Karp_00595 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 28.492 28.85 2 0.0060445 6937 20181213_JW_Orientia_Karp_2_3 159.75 52.198 316330000 118840000 0 63474000 15287000 23598000 12685000 39110000 43333000 4134 1160 3619 25224;25225;25226;25227;25228;25229;25230 16428;16429;16430;16431;16432 16431 5 IISGQNFPK Unmodified 1002.5498 0.54983053 667 H3BUD4;B4DYZ4;Q15111-2;Q15111;H7C276;Q9UPR0-2;Q9UPR0-3;Q9UPR0 PLCL1;PLCL2 Phosphoinositide phospholipase C;Inactive phospholipase C-like protein 1;Inactive phospholipase C-like protein 2 yes no 0 0 0 0 By MS/MS 1 41.04 41.692 2 0.021424 13007 20181213_JW_Orientia_Karp_3_1 83.265 24.284 15890000 0 0 0 0 0 0 15890000 0 4135 667 3620 25231 16433 16433 1 IISLETYNLLR Unmodified 1333.7606 0.76055158 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;Q96IE3 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS 1 65.323 65.422 2 0.010836 28326 20181213_JW_Orientia_Karp_1_3 114.97 61.194 0 0 0 0 0 0 0 0 0 4136 1803 3621 25232 16434 16434 1 IISSIEQK Unmodified 916.52295 0.52294707 1728 V9HW98;P62258;G9K389;G9K388;P62258-2;B4DJF2;I3L3T1;B4DJB0;K7EIT4 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By matching 1 1 32.199 32.474 2 0.036873 9094 20181213_JW_Orientia_Karp_1_2 78.77 0 27033000 0 17367000 9666700 0 0 0 0 0 4137 1728 3622 25233;25234 16435 16435 1 IITEGFEAAK Unmodified 1077.5706 0.57062555 262 A1JUI8;B4DPJ8;Q59ET3;B2R9K8;A0A024RDL1;P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 43.1 43.429 2 0.011138 14616 20181213_JW_Orientia_Karp_1_3 91.265 31.246 63924000 15371000 24294000 14863000 913120 0 0 8482300 0 4138 262 3623 25235;25236;25237;25238;25239 16436;16437;16438 16438 3 IITGPAPVLPPAALR Unmodified 1484.9079 0.90788452 1950 Q96PU8-5;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8;H0YG47;B4DHR6;H0YGD6 QKI Protein quaking yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 63.299 63.536 2 0.0077549 27082 20181213_JW_Orientia_Karp_1_3 100.69 72.482 24894000 0 8830900 14220000 439640 0 1403100 0 0 4139 1950 3624 25240;25241;25242;25243 16439 16439 1 IITHPNFNGNTLDNDIMLIK Oxidation (M) 2298.1678 0.16781697 787 CON__P00761 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 57.923 58.268 3 9.9225E-18 22091 20181213_JW_Orientia_Karp_2_1 194.67 115.28 4080700000 426250000 378870000 422310000 1004000000 1083700000 552140000 88619 213300000 + 4140 787 3625 25244;25245;25246;25247;25248;25249;25250;25251 16440;16441;16442;16443;16444;16445 16443 450 6 IITHPNFNGNTLDNDIMLIK Oxidation (M);Deamidation (NQ) 2299.1518 0.15183255 787 CON__P00761 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 5 6 5 4 5 61.352 61.654 2;3;4 2.7353E-29 24282 20181213_JW_Orientia_Karp_2_3 221.47 148.89 7371800000 855770000 807950000 1446800000 262270000 2663200000 1088200000 31902000 215630000 + 4141 787 3625 25252;25253;25254;25255;25256;25257;25258;25259;25260;25261;25262;25263;25264;25265;25266;25267;25268;25269;25270;25271;25272;25273;25274;25275;25276;25277;25278;25279;25280;25281;25282;25283;25284;25285;25286;25287;25288;25289;25290;25291 16446;16447;16448;16449;16450;16451;16452;16453;16454;16455;16456;16457;16458;16459;16460;16461;16462;16463;16464;16465;16466;16467;16468;16469 16465 260;261;262;263 450 24 IITHPNFNGNTLDNDIMLIK Unmodified 2282.1729 0.17290235 787 CON__P00761 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.887 61.207 3 4.7075E-06 23738 20181213_JW_Orientia_Karp_2_3 145.99 108.7 1646600000 313810000 180090000 289700000 134980000 343930000 225870000 4066000 154130000 + 4142 787 3625 25292;25293;25294;25295;25296;25297;25298;25299 16470;16471;16472;16473;16474;16475;16476;16477 16475 8 IITHPNFNGNTLDNDIMLIK Oxidation (M);2 Deamidation (NQ) 2300.1358 0.13584814 787 CON__P00761 yes yes 0 2 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 7 4 2 3 6 4 3 63.149 63.402 2;3 7.6416E-49 22805 20181213_JW_Orientia_Karp_3_2 252.33 199.97 1859700000 226900000 299260000 198330000 27634000 561860000 438310000 17554000 89870000 + 4143 787 3625 25300;25301;25302;25303;25304;25305;25306;25307;25308;25309;25310;25311;25312;25313;25314;25315;25316;25317;25318;25319;25320;25321;25322;25323;25324;25325;25326;25327;25328;25329;25330;25331 16478;16479;16480;16481;16482;16483;16484;16485;16486;16487;16488;16489;16490;16491;16492;16493;16494;16495;16496;16497 16495 260;261;262;263 450 19 IITHPNFNGNTLDNDIMLIK Deamidation (NQ) 2283.1569 0.15691793 787 CON__P00761 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 6 3 5 5 2 4 63.797 64.023 2;3 2.0428E-11 22573 20181213_JW_Orientia_Karp_3_1 174.18 137.24 3912600000 273530000 830770000 1297900000 48871000 673500000 544070000 95064000 148840000 + 4144 787 3625 25332;25333;25334;25335;25336;25337;25338;25339;25340;25341;25342;25343;25344;25345;25346;25347;25348;25349;25350;25351;25352;25353;25354;25355;25356;25357;25358;25359;25360;25361;25362;25363;25364;25365;25366;25367;25368 16498;16499;16500;16501;16502;16503;16504;16505;16506;16507;16508;16509;16510;16511;16512;16513;16514;16515;16516;16517 16512 260;261;262;263 19 IITHPNFNGNTLDNDIMLIK 2 Deamidation (NQ) 2284.1409 0.14093352 787 CON__P00761 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 4 3 1 3 4 66.15 66.389 3 1.2445E-05 26583 20181213_JW_Orientia_Karp_3_2 142.43 67.618 543110000 113130000 50682000 168230000 20151000 89542000 20963000 22105000 58299000 + 4145 787 3625 25369;25370;25371;25372;25373;25374;25375;25376;25377;25378;25379;25380;25381;25382;25383;25384;25385;25386;25387;25388;25389;25390;25391;25392;25393 16518;16519;16520;16521;16522;16523;16524;16525;16526;16527;16528;16529;16530;16531;16532;16533;16534;16535;16536;16537;16538;16539 16538 260;261;262;263 22 IITHPNFNGNTLDNDIMLIK Oxidation (M);3 Deamidation (NQ) 2301.1199 0.11986372 787 CON__P00761 yes yes 0 3 1 0 By matching By MS/MS By MS/MS By matching 1 1 2 1 63.411 63.673 2;3 7.1351E-06 25074 20181213_JW_Orientia_Karp_2_1 142.4 83.149 121050000 0 3495600 0 10733000 92632000 0 0 14194000 + 4146 787 3625 25394;25395;25396;25397;25398 16540;16541;16542 16540 260;261;262;263 450 2 IITHPNFNGNTLDNDIMLIKLSSPATLNSR Unmodified 3308.7187 0.71871013 787 CON__P00761 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.189 65.389 4 5.1813E-06 25791 20181213_JW_Orientia_Karp_2_3 97.295 81.685 238440000 31247000 0 31093000 7932100 76810000 23044000 68314000 0 + 4147 787 3626 25399;25400;25401;25402;25403;25404 16543;16544;16545;16546;16547;16548 16547 6 IITHPNFNGNTLDNDIMLIKLSSPATLNSR Oxidation (M) 3324.7136 0.71362475 787 CON__P00761 yes yes 0 0 1 1 By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 2 1 1 2 65.12 65.372 4 0.0014695 24676 20181213_JW_Orientia_Karp_2_3 65.275 49.287 262080000 31974000 35213000 19083000 20546000 91139000 38867000 0 25261000 + 4148 787 3626 25405;25406;25407;25408;25409;25410;25411;25412;25413 16549;16550 16550 450 2 IITHPNFNGNTLDNDIMLIKLSSPATLNSR Oxidation (M);Deamidation (NQ) 3325.6976 0.69764033 787 CON__P00761 yes yes 0 1 1 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 1 67.108 67.283 4 0.00089139 25291 20181213_JW_Orientia_Karp_2_2 67.388 48.064 52143000 0 0 7318000 1830400 21631000 14710000 6654000 0 + 4149 787 3626 25414;25415;25416;25417;25418;25419 16551;16552 16552 260;261;262;263;264 450 1 IITITGTQDQIQNAQYLLQNSVK Deamidation (NQ) 2589.365 0.36499645 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;B4DFF1;B3KU16 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 2 1 2 1 69.176 69.369 3 1.3364E-44 30428 20181213_JW_Orientia_Karp_1_2 226.23 196.78 185540000 35325000 37596000 37197000 9524700 18709000 10023000 24494000 12667000 4150 63 3627 25420;25421;25422;25423;25424;25425;25426;25427;25428;25429;25430;25431;25432 16553;16554;16555;16556;16557;16558;16559;16560;16561;16562;16563;16564 16556 26;27;1271 12 IITITGTQDQIQNAQYLLQNSVK Unmodified 2588.381 0.38098087 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;B4DFF1;B3KU16 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.87 70.015 3 5.0813E-57 31798 20181213_JW_Orientia_Karp_1_1 254.54 217.54 351590000 107350000 55826000 46082000 16622000 15355000 11741000 87138000 11474000 4151 63 3627 25433;25434;25435;25436;25437;25438;25439;25440 16565;16566;16567;16568;16569;16570;16571;16572;16573 16565 9 IITLAGPTNAIFK Unmodified 1357.7969 0.79693709 594 B4DLC0;Q15366-6;Q15366-3;Q15366;Q15366-2;F8VXH9;B4DRD7;H3BRU6;F8VZX2;Q15366-7;B4DXP5;Q15366-4;Q15366-5;F8W0G4;F8W1G6 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 63.195 63.495 2 0.00024159 27181 20181213_JW_Orientia_Karp_1_3 160.53 104.27 46669000 0 9933700 35193000 196080 0 1242300 103830 0 4152 594 3628 25441;25442;25443;25444;25445 16574;16575 16575 2 IITLAGPTNAIFK Deamidation (NQ) 1358.781 0.78095267 594 B4DLC0;Q15366-6;Q15366-3;Q15366;Q15366-2;F8VXH9;B4DRD7;H3BRU6;F8VZX2;Q15366-7;B4DXP5;Q15366-4;Q15366-5;F8W0G4;F8W1G6 PCBP2 Poly(rC)-binding protein 2 yes no 0 1 0 0 By MS/MS By matching 1 1 67.167 67.391 2 0.0048341 29788 20181213_JW_Orientia_Karp_1_2 119.53 79.906 4453400 0 1251400 3202000 0 0 0 0 0 4153 594 3628 25446;25447 16576 16576 209 1 IITLTGPTNAIFK Unmodified 1387.8075 0.80750177 1806 Q53SS8;Q15365 PCBP1 Poly(rC)-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 62.91 63.261 2 8.3193E-08 27003 20181213_JW_Orientia_Karp_1_3 192.38 134.13 46740000 0 18458000 22165000 765320 0 2732500 64149 2555800 4154 1806 3629 25448;25449;25450;25451;25452;25453;25454;25455 16577;16578;16579;16580;16581;16582 16579 6 IITNDEIQQNISGIK Unmodified 1684.8996 0.89956426 1161 Karp_00600 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 51.763 52.013 2 5.484E-09 20026 20181213_JW_Orientia_Karp_1_3 190.37 128.41 104580000 22429000 29698000 34623000 9715000 8118300 0 0 0 4155 1161 3630 25456;25457;25458;25459;25460 16583;16584;16585;16586 16585 4 IITSTSPQLR Unmodified 1114.6346 0.63462279 1109 Karp_00291 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 38.206 38.55 2 0.00078678 11537 20181213_JW_Orientia_Karp_2_1 128.6 71.555 196390000 31329000 72592000 49437000 12308000 8476000 0 16706000 5538000 4156 1109 3631 25461;25462;25463;25464;25465;25466;25467;25468 16587;16588;16589;16590;16591;16592 16590 6 IIVLDLSK Unmodified 899.56917 0.56916898 1113 Karp_00296 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 56.504 56.771 2 0.0080342 22904 20181213_JW_Orientia_Karp_1_3 110.12 27.879 76584000 19544000 12458000 17936000 1460200 6364000 18822000 0 0 4157 1113 3632 25469;25470;25471;25472;25473;25474;25475 16593;16594;16595;16596;16597;16598 16595 6 IIVLGLLPR Unmodified 992.67464 0.67463711 1748 V9HW44;P68402;J3KNE3 HEL-S-303;PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 67.962 68.062 2 0.00080863 26876 20181213_JW_Orientia_Karp_2_2 138.07 128.49 22234000 4474400 0 13901000 0 2083600 1774900 0 0 4158 1748 3633 25476;25477;25478;25479;25480;25481 16599;16600;16601;16602;16603 16602 5 IIVNVDHQGDLR Unmodified 1377.7365 0.7364621 1193 Karp_00798 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 39.026 39.356 3 0.032667 11999 20181213_JW_Orientia_Karp_2_1 54.772 16.751 148260000 9182300 0 44848000 46903000 37656000 921590 8445100 301610 4159 1193 3634 25482;25483;25484;25485;25486;25487;25488 16604 16604 1 IIWVPLTILGGLSEHAAK Unmodified 1917.1088 0.10876917 1182 Karp_00659 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 73.666 73.681 3 0.035892 34078 20181213_JW_Orientia_Karp_1_1 46.926 10.48 36032000 18053000 8084900 9894300 0 0 0 0 0 4160 1182 3635 25489;25490;25491 16605 16605 1 IIYSPTVGDPIDEYTTVPGR Unmodified 2192.1001 0.10011456 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.91 66.077 2 0.0011844 26217 20181213_JW_Orientia_Karp_2_3 104.41 70.414 55433000 24615000 10470000 11443000 0 3475500 1652300 3777000 0 4161 852 3636 25492;25493;25494;25495;25496;25497;25498 16606;16607;16608;16609;16610 16608 5 IKEEILQAIPFFGNAVER Unmodified 2073.1259 0.1258758 1428 Karp_02381 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 70.464 70.576 3 0.017922 32204 20181213_JW_Orientia_Karp_1_1 83.948 51.582 99440000 31044000 0 0 6467300 0 17416000 44513000 0 4162 1428 3637 25499;25500;25501;25502;25503 16611;16612;16613;16614;16615 16611 5 IKFEMEQNLR Oxidation (M) 1322.6653 0.66527099 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 1 33.473 33.831 3 0.00092777 9245 20181213_JW_Orientia_Karp_2_3 133.91 65.126 416620000 48483000 45051000 67011000 113810000 39314000 10619000 43156000 49179000 + 4163 1653 3638 25504;25505;25506;25507;25508;25509;25510;25511;25512 16616;16617;16618;16619;16620;16621;16622 16621 1271 7 IKFEMEQNLR Unmodified 1306.6704 0.67035637 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 41.963 42.3 2 0.024433 13331 20181213_JW_Orientia_Karp_2_1 122.94 59.405 107550000 15104000 7785100 0 11975000 7883900 1621600 57327000 5853700 + 4164 1653 3638 25513;25514;25515;25516;25517;25518;25519 16623;16624 16623 2 IKFEMEQNLR Oxidation (M);Deamidation (NQ) 1323.6493 0.64928657 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 1 1 By MS/MS 1 36.823 37.372 3 0.019702 10852 20181213_JW_Orientia_Karp_2_1 84.658 43.118 0 0 0 0 0 0 0 0 0 + 4165 1653 3638 25520 16625 16625 1099 1271 1 IKGDVPSVGLEGPDVDLQGPEAK Unmodified 2319.1958 0.19580586 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 55.24 55.506 3 0.0080625 22850 20181213_JW_Orientia_Karp_1_1 122.87 90.355 215190000 75256000 43519000 39448000 10404000 22583000 23981000 0 0 4166 1782 3639 25521;25522;25523;25524;25525;25526 16626;16627;16628;16629;16630 16626 5 IKGEHPGLSIGDVAK Unmodified 1519.8358 0.83584179 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 34.816 35.106 3 0.0019466 9999 20181213_JW_Orientia_Karp_3_1 125.33 85.453 311250000 68904000 56662000 72130000 0 60934000 0 52623000 0 4167 264 3640 25527;25528;25529;25530;25531;25532 16631;16632;16633;16634 16634 4 IKGQYVQLK Unmodified 1075.639 0.63897988 1227 Karp_00894 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 28.587 28.947 3 0.040752 6953 20181213_JW_Orientia_Karp_3_1 72.879 19.943 3249100 0 1084400 781190 0 432830 290040 660640 0 4168 1227 3641 25533;25534;25535;25536;25537 16635 16635 1 IKKPIVGFIAGVTAPPGK Unmodified 1792.0975 0.097476206 1120 Karp_00318 yes yes 0 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 46.879 47.164 3 0.0078665 15015 20181213_JW_Orientia_Karp_3_2 107.62 95.722 46941000 5401700 10899000 0 4561500 4920300 3689000 0 17469000 4169 1120 3642 25538;25539;25540;25541;25542;25543 16636;16637 16637 2 IKNEIDPTLTFR Unmodified 1445.7878 0.78782897 1426 Karp_02372 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.206 48.456 3 0.00038506 17494 20181213_JW_Orientia_Karp_1_3 154.36 107.07 98298000 24312000 33452000 16652000 11591000 3390100 8901000 0 0 4170 1426 3643 25544;25545;25546;25547;25548;25549 16638;16639;16640;16641;16642 16639 5 IKQLLQENEVQFLDKGDENTVIDLGSK Deamidation (NQ) 3073.5819 0.5819251 1780 Q08830 FGL1 Fibrinogen-like protein 1 yes yes 0 1 0 2 By MS/MS 1 75.35 75.35 3 0.021902 35210 20181213_JW_Orientia_Karp_1_1 71.696 42.914 19096000 19096000 0 0 0 0 0 0 0 4171 1780 3644 25550 16643 16643 1156;1977;1978;1979 0 IKVPSNIQVTVPK Unmodified 1421.8606 0.86059998 1227 Karp_00894 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 47.009 47.289 3 0.0061125 16003 20181213_JW_Orientia_Karp_2_1 107.99 77.789 38265000 0 19028000 8541700 3170000 785420 6739600 0 0 4172 1227 3645 25551;25552;25553;25554;25555 16644;16645 16645 2 IKYPENFFLLR Unmodified 1438.7973 0.79727144 1724 V9HW04;P62140;C9J9S3;C9JP48;Q9UPN1;B7ZB67;B4DJ75;F8VYE8;A0A024RBP2;F8W0W8;B3KXM2;P62136-3;P36873;P62136;P36873-2;P62136-2;E7ETD8;E9PMD7;F8VR82;B4E163 HEL-S-80p;PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 59.425 59.635 3 0.0071312 24808 20181213_JW_Orientia_Karp_1_3 101.39 46.079 12804000 7915200 803130 2298500 0 802280 984450 0 0 4173 1724 3646 25556;25557;25558;25559;25560 16646;16647 16647 2 ILAGPAGDSNVVK Unmodified 1239.6823 0.68230126 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 41.337 41.654 2 0.0017415 12715 20181213_JW_Orientia_Karp_3_2 132.32 79.603 566870000 169710000 185470000 130170000 10098000 0 9832500 61604000 0 4174 1466;1549 3647 25561;25562;25563;25564;25565;25566;25567 16648;16649;16650 16650 3 ILAHLTGTEFMQDPDEEHLK Unmodified 2323.1154 0.11544705 1984 Q9NR12;Q9NR12-2;D6RH06;Q9NR12-5;Q9NR12-6;Q9NR12-4 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 50.553 50.802 4 0.032311 19640 20181213_JW_Orientia_Karp_1_1 48.907 13.578 35139000 15520000 0 12565000 7054600 0 0 0 0 4175 1984 3648 25568;25569;25570 16651 16651 0 ILAIGLINEALDEGDAQK Unmodified 1882.0048 0.004757612 235 A4QPB0;A0A024RC65;P46940;Q6P1N4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 2 1 1 73.186 73.268 3 0.0025302 33749 20181213_JW_Orientia_Karp_1_2 130.47 104.32 32914000 14660000 10530000 7723300 0 0 0 0 0 4176 235 3649 25571;25572;25573;25574 16652;16653 16653 2 ILALASFEVEK Unmodified 1218.686 0.68598966 95 A0A024R4I7;Q8WZA0;Q8WZA0-2 LZIC Protein LZIC yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 61.582 61.86 2 0.0045173 24136 20181213_JW_Orientia_Karp_2_3 120.27 41.338 17763000 2224200 2787900 3853100 1461500 4151600 3167200 117960 0 4177 95 3650 25575;25576;25577;25578;25579;25580;25581 16654;16655;16656;16657;16658 16658 5 ILAQATSDLVNAIK Unmodified 1455.8297 0.82969378 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.245 59.575 2 1.0933E-11 24759 20181213_JW_Orientia_Karp_1_3 200.93 137.51 46311000 13152000 12835000 12646000 1416400 2950800 0 841460 2469300 4178 2016 3651 25582;25583;25584;25585;25586;25587;25588 16659;16660;16661;16662;16663;16664 16661 4 ILAQITGTEHLK Unmodified 1322.7558 0.75580056 257;732 A0A024RDE8;Q96HC4;F5H7Y0;Q96HC4-7;Q96HC4-4;Q96HC4-6;H0Y8Y3;Q4W5K9;Q96HC4-3;Q96HC4-2;H0YBI4;B7Z8X5;Q59FC9 PDLIM5;LIM PDZ and LIM domain protein 5 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 40.32 40.672 3 0.00069881 12680 20181213_JW_Orientia_Karp_3_1 123.01 72.813 90395000 0 46676000 19568000 0 4303600 2229800 16925000 692470 4179 257;732 3652 25589;25590;25591;25592;25593;25594 16665;16666;16667;16668 16668 4 ILASFNGITFSPR Deamidation (NQ) 1422.7507 0.75071518 1065 Karp_00013 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 2 1 68.01 68.183 2 1.7722E-24 26371 20181213_JW_Orientia_Karp_3_2 229.68 174.6 84804000 26722000 0 18146000 1390200 17563000 7095500 3466200 10421000 4180 1065 3653 25595;25596;25597;25598;25599;25600;25601;25602;25603;25604;25605;25606 16669;16670;16671;16672;16673;16674;16675 16675 399 7 ILATPPQEDAPSVDIANIR Unmodified 2019.0637 0.063669474 527 B3KSI4;V9HWD9;Q53EM5;P29401;P29401-2;B4DVU1;B4E022;B3KPZ8;E9PFF2 HEL107;TKT Transketolase yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 2 2 1 2 61.117 61.443 2;3 1.3346E-17 25902 20181213_JW_Orientia_Karp_1_3 205.33 155.19 197850000 37805000 34075000 58886000 11084000 24091000 19317000 695460 11901000 4181 527 3654 25607;25608;25609;25610;25611;25612;25613;25614;25615;25616;25617;25618;25619;25620 16676;16677;16678;16679;16680;16681 16677 6 ILAVPHSK Unmodified 863.52289 0.52288749 1452 Karp_02533 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 27.324 27.681 2 0.0069145 7325 20181213_JW_Orientia_Karp_1_1 113.7 48.92 47326000 6416600 9974400 7148200 3786500 5129700 1829800 8649000 4391600 4182 1452 3655 25621;25622;25623;25624;25625;25626;25627;25628 16682;16683;16684;16685;16686;16687;16688 16682 7 ILCSQSQPGNR Unmodified 1258.6088 0.60881874 1310 Karp_01252 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.789 26.135 2 6.886E-06 6187 20181213_JW_Orientia_Karp_1_2 176.6 118 135630000 20645000 39441000 18875000 15118000 7688900 5882200 14037000 13940000 4183 1310 3656 25629;25630;25631;25632;25633;25634;25635;25636 16689;16690;16691;16692;16693;16694;16695;16696 16690 8 ILDADILLK Unmodified 1012.6168 0.61684746 2033 yes no 0 0 0 0 By MS/MS By matching 1 1 58.168 58.648 2 0.0034221 22585 20181213_JW_Orientia_Karp_2_1 111.74 2.0247 140800000 0 0 0 140600000 0 0 0 202350 + 4184 2033 3657 25637;25638 16697 16697 1 ILDEIEEHNIK Unmodified 1351.6983 0.69834526 704 B5MCX3;Q15019;Q15019-3;Q15019-2;C9J2Q4;H7C2Y0 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS 1 41.399 41.749 3 0.024155 13911 20181213_JW_Orientia_Karp_1_2 76.655 31.808 0 0 0 0 0 0 0 0 0 4185 704 3658 25639 16698 16698 1 ILDELLQTCVDPEDCPVCEVAGR Unmodified 2687.2241 0.22408757 1466;1549 L8E853;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 72.072 72.171 2;3 1.9996E-14 33038 20181213_JW_Orientia_Karp_1_2 168.83 141.33 215660000 67058000 62521000 50956000 0 0 0 35127000 0 4186 1466;1549 3659 25640;25641;25642;25643;25644 16699;16700;16701;16702 16700 4 ILDETQEAVEYQR Unmodified 1592.7682 0.76821574 1019 I3L3E4;I3L4G8;I3L4A1;Q96FZ7 CHMP6 Charged multivesicular body protein 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.608 45.952 2 2.3047E-34 15975 20181213_JW_Orientia_Karp_1_3 248.21 188.1 57985000 16496000 14775000 17062000 1755400 0 2957500 2176400 2763300 4187 1019 3660 25645;25646;25647;25648;25649;25650;25651 16703;16704;16705;16706;16707;16708;16709 16705 7 ILDLGITGPEGHVLSRPEEVEAEAVNR Unmodified 2899.5039 0.50394955 1814 Q53ET2;Q59GB4;Q16555-2;Q16555;Q86U75 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 57.888 58.099 4 0.021906 23845 20181213_JW_Orientia_Karp_1_3 45.878 26.34 254780000 48645000 44088000 83050000 0 60921000 18079000 0 0 4188 1814 3661 25652;25653;25654;25655;25656 16710;16711 16711 2 ILDLIESGK Unmodified 986.56481 0.56481189 1538 V9HW83;V9HVX6;P00352;B4DXX3;B4DDF8 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 53.596 53.695 2 0.010223 21643 20181213_JW_Orientia_Karp_1_1 93.649 41.794 36534000 21547000 0 14987000 0 0 0 0 0 4189 1538 3662 25657;25658 16712;16713 16712 2 ILDPGDGLPVILK Unmodified 1348.7966 0.79660274 1288 Karp_01160 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 70.01 70.154 2 0.00084301 27975 20181213_JW_Orientia_Karp_2_2 144.77 100.34 156880000 28550000 0 41478000 12583000 16149000 12721000 36052000 9343100 4190 1288 3663 25659;25660;25661;25662;25663;25664;25665;25666;25667 16714;16715;16716;16717;16718;16719;16720;16721;16722 16719 9 ILDQGEDFPASEMTR Oxidation (M) 1723.7723 0.77231483 1643 V9HW71;P30040;F8VY02 HEL-S-107;ERP29 Endoplasmic reticulum resident protein 29 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.976 48.321 2 1.1712E-05 16548 20181213_JW_Orientia_Karp_2_1 163.62 129.24 65029000 11338000 10751000 10010000 10319000 7133700 7911600 1033800 6531500 4191 1643 3664 25668;25669;25670;25671;25672;25673;25674;25675 16723;16724;16725;16726;16727;16728;16729 16726 1268 7 ILDQGEDFPASEMTR Unmodified 1707.7774 0.77740021 1643 V9HW71;P30040;F8VY02 HEL-S-107;ERP29 Endoplasmic reticulum resident protein 29 yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 54.827 55.24 2 0.0056854 20365 20181213_JW_Orientia_Karp_2_1 104.17 72.737 20835000 8950000 0 0 3409800 5388600 0 2275500 811260 4192 1643 3664 25676;25677;25678;25679;25680 16730;16731 16730 2 ILDSVGIEADDDR Unmodified 1416.6733 0.67325272 238 A0A024RCA7;P05387 RPLP2 60S acidic ribosomal protein P2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 51.254 51.614 2 1.1663E-24 17843 20181213_JW_Orientia_Karp_3_1 227.36 169.12 1998400000 467600000 341010000 0 652630000 0 371580000 165600000 0 4193 238 3665 25681;25682;25683;25684;25685 16732;16733;16734;16735 16735 4 ILDSVGIEADDDRLNK Unmodified 1771.8952 0.89520716 238 A0A024RCA7;P05387 RPLP2 60S acidic ribosomal protein P2 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 1 2 2 48.19 48.541 2;3 0.029996 17758 20181213_JW_Orientia_Karp_1_2 115.83 83.551 3089000000 1087100000 1346000000 538040000 28276000 11049000 15046000 1168400 62279000 4194 238 3666 25686;25687;25688;25689;25690;25691;25692;25693;25694;25695;25696;25697;25698;25699;25700 16736;16737;16738 16736 3 ILDVLEEIPK Unmodified 1167.6751 0.67509062 143 A0A024R745;Q16718;F8WAS3;H7BYD0;Q16718-2;C9IZN5 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 0 0 0 0 By MS/MS 1 67.17 67.42 2 0.0052751 29827 20181213_JW_Orientia_Karp_1_2 127.4 74.231 0 0 0 0 0 0 0 0 0 4195 143 3667 25701 16739 16739 1 ILEDNSIPQVK Unmodified 1254.682 0.68196691 1587 P11177-3;P11177-2;P11177 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 47.104 47.477 2 0.0010925 15232 20181213_JW_Orientia_Karp_3_2 128.03 56.343 48604000 10281000 15672000 8672100 3112100 0 3729900 183920 6952800 4196 1587 3668 25702;25703;25704;25705;25706;25707;25708 16740;16741;16742;16743;16744;16745;16746 16746 7 ILEFFGLK Unmodified 965.5586 0.5586043 171 B4DNL5;A0A024R8S5;P07237;F5H8J2;B4DLN6;H7BZ94;B4DUA5;I3L398;Q96C96;H0Y3Z3;I3L4M2 P4HB Protein disulfide-isomerase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 68.64 68.817 2 0.0065741 27247 20181213_JW_Orientia_Karp_2_2 114.78 45.868 26031000 7207400 2135900 11629000 0 1722700 2877800 0 458750 4197 171 3669 25709;25710;25711;25712;25713;25714 16747;16748;16749;16750;16751;16752 16750 6 ILEGEGDAEASHIYNSVYSQDPEFYR Deamidation (NQ) 2989.3254 0.32537606 1106 Karp_00284 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.861 58.154 3 4.519E-18 23869 20181213_JW_Orientia_Karp_1_3 166.98 141.83 164930000 65758000 0 37249000 17787000 19791000 14934000 0 9415100 4198 1106 3670 25715;25716;25717;25718;25719;25720 16753;16754;16755;16756;16757;16758;16759;16760 16754 461 8 ILEGEGDAEASHIYNSVYSQDPEFYR Unmodified 2988.3414 0.34136048 1106 Karp_00284 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.232 59.52 3 1.6357E-18 24948 20181213_JW_Orientia_Karp_1_2 165.58 141.37 488770000 169290000 74657000 130720000 28422000 30737000 29408000 0 25528000 4199 1106 3670 25721;25722;25723;25724;25725;25726;25727 16761;16762;16763;16764;16765;16766;16767;16768 16762 7 ILEINPNHTIIK Unmodified 1403.8136 0.81364979 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 46.334 46.655 2;3 1.8413E-05 15605 20181213_JW_Orientia_Karp_3_1 175.33 101.16 830600000 210880000 239590000 164360000 89331000 41183000 63967000 6755900 14529000 4200 1251 3671 25728;25729;25730;25731;25732;25733;25734;25735;25736;25737;25738;25739;25740;25741;25742;25743 16769;16770;16771;16772;16773;16774;16775;16776 16775 7 ILELDQFK Unmodified 1004.5542 0.5542472 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 55.785 56.152 2 0.0075273 22553 20181213_JW_Orientia_Karp_1_3 111.74 18.31 19894000 0 0 5924300 0 0 3460400 10509000 0 4201 48 3672 25744;25745;25746;25747 16777;16778 16778 2 ILELLAIK Unmodified 911.60555 0.60555449 1321 Karp_01283 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 64.567 64.733 2 0.0015508 25177 20181213_JW_Orientia_Karp_2_2 168.45 70.033 215540000 91997000 31697000 26120000 380050 41211000 24140000 0 0 4202 1321 3673 25748;25749;25750;25751;25752;25753 16779;16780;16781;16782;16783;16784 16783 6 ILEQMSPMVEK 2 Oxidation (M) 1335.6414 0.641424 1449 Karp_02529 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 35.314 35.647 2 0.00027653 10593 20181213_JW_Orientia_Karp_1_2 144.55 61.8 217410000 72786000 45189000 23471000 29119000 0 11473000 35377000 0 4203 1449 3674 25754;25755;25756;25757;25758;25759;25760;25761 16785;16786;16787;16788;16789;16790;16791;16792;16793;16794 16786 1053;1054 10 ILEQMSPMVEK Unmodified 1303.6516 0.65159476 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 49.966 50.216 2 0.00039478 19351 20181213_JW_Orientia_Karp_1_1 149.94 84.786 114400000 38762000 0 43771000 22094000 0 9769200 0 0 4204 1449 3674 25762;25763;25764;25765 16795;16796 16795 2 ILEQMSPMVEK Oxidation (M) 1319.6465 0.64650938 1449 Karp_02529 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 44.313 44.641 2 0.0032742 15155 20181213_JW_Orientia_Karp_1_3 149.96 87.493 52577000 7363900 36559000 0 4492300 0 0 0 4161400 4205 1449 3674 25766;25767;25768;25769;25770;25771 16797;16798;16799;16800 16799 1053;1054 4 ILEQQNSSR Unmodified 1073.5465 0.54653606 2 B4DNE4;G3V1Q4;B4DPQ6;A0A023T695;B4DUD6;Q8TC62;Q3LIE9;A4GYY8;E7ES33;E7EPK1;A8K3D0;Q16181-2;Q16181;A4D1Y2;Q5JXL7 SEPT7;Nbla02942;DKFZp686F17268;LOC392884;DKFZp586I031 Septin-7 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 22.441 22.69 2 0.0071154 4722 20181213_JW_Orientia_Karp_1_3 93.598 44.837 11142000 2843500 1707400 3508200 570690 0 0 2512500 0 4206 2 3675 25772;25773;25774;25775;25776 16801 16801 1 ILESSQTLLSVLK Unmodified 1429.8392 0.83919583 165 A0A024R8G6;O43805 SSNA1 Sjoegren syndrome nuclear autoantigen 1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 65.984 66.176 2 0.0027401 26262 20181213_JW_Orientia_Karp_2_3 118.87 65.115 10884000 0 1994000 758180 0 4965500 1990300 0 1176100 4207 165 3676 25777;25778;25779;25780;25781 16802;16803 16803 2 ILETTTFFQR Unmodified 1254.6608 0.66083754 408 A8KAK1;Q9NYU2-2;Q9NYU2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 56.508 56.757 2 0.0026495 23629 20181213_JW_Orientia_Karp_1_1 112.11 60.761 28674000 11101000 0 15425000 2148800 0 0 0 0 4208 408 3677 25782;25783;25784 16804;16805 16804 2 ILFELDGVSEGIAIK Unmodified 1602.8869 0.88687431 1235 Karp_00902 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 72.643 72.713 2 0.0043265 29699 20181213_JW_Orientia_Karp_2_1 110.64 50.147 289620000 88786000 42487000 42891000 11154000 24419000 13322000 38990000 27573000 4209 1235 3678 25785;25786;25787;25788;25789;25790;25791;25792 16806;16807;16808 16808 3 ILFLDPSGK Unmodified 988.55933 0.55933258 1537 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 0 0 By MS/MS By matching 1 1 60.607 60.858 2 0.026037 23296 20181213_JW_Orientia_Karp_2_2 80.438 6.0229 9589900 0 0 0 0 4920700 4669200 0 0 4210 1537 3679 25793;25794 16809 16809 1 ILFLEEVEPDPALLELR Unmodified 1995.0928 0.092844338 1150 Karp_00511 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.039 76.033 2 1.0783E-53 35714 20181213_JW_Orientia_Karp_1_2 258.65 182.13 637050000 158620000 90362000 167470000 36026000 52671000 24796000 93231000 13878000 4211 1150 3680 25795;25796;25797;25798;25799;25800;25801;25802 16810;16811;16812;16813;16814;16815;16816;16817;16818 16811 9 ILFRPVASQLPR Unmodified 1395.8351 0.83505393 354 Q6PUJ7;Q6FHP5;Q53FV0;A8K401;P35232;C9JZ20;E7ESE2;E9PCW0;C9JW96;P35232-2;D6RBK0 HEL-S-54e;PHB Prohibitin yes no 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 48.133 48.333 3 0.032914 17399 20181213_JW_Orientia_Karp_1_3 78.903 44.724 47780000 11956000 21217000 11110000 0 0 3497000 0 0 4212 354 3681 25803;25804;25805;25806 16819 16819 1 ILFVDTR Unmodified 862.49125 0.49125301 1347 Karp_01523 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 52.053 52.303 2 0.029963 20728 20181213_JW_Orientia_Karp_1_1 89.55 26.835 261430000 65746000 31293000 54390000 50072000 8482100 51443000 0 0 4213 1347 3682 25807;25808;25809;25810;25811;25812 16820;16821 16820 2 ILGADTSVDLEETGR Unmodified 1574.7788 0.77878042 1628 V9HW26;P25705-2;P25705;P25705-3;K7EK77;B4DGW3;K7ERX7;K7EJP1;K7EQH4;K7ESA0 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 53.418 53.776 2 2.3537E-62 21597 20181213_JW_Orientia_Karp_1_1 277.15 222.06 208660000 46038000 59503000 57733000 14135000 13355000 12763000 2746000 2388500 4214 1628 3683 25813;25814;25815;25816;25817;25818;25819;25820 16822;16823;16824;16825;16826 16822 5 ILGEVINALK Unmodified 1068.6543 0.6542956 732 B7Z8X5;Q59FC9 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 58.876 59.089 2 0.0039656 22373 20181213_JW_Orientia_Karp_2_2 105.52 59.095 14443000 4524900 4837600 0 0 2756900 2323800 0 0 4215 732 3684 25821;25822;25823;25824 16827;16828;16829 16829 3 ILGGVISAISEAAAQYNPEPPPPR Unmodified 2446.2856 0.28562392 1552 P04632;K7ELJ7;K7EM73;K7EIV0;A0A075B7C0 CAPNS1 Calpain small subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 73.051 73.125 2;3 6.8309E-21 26992 20181213_JW_Orientia_Karp_3_1 260.98 233.95 930240000 196130000 132240000 129140000 58328000 59303000 47684000 263570000 43844000 4216 1552 3685 25825;25826;25827;25828;25829;25830;25831;25832;25833;25834;25835;25836;25837 16830;16831;16832;16833;16834;16835;16836;16837;16838;16839;16840;16841 16839 12 ILGKGDIISLVEK Unmodified 1383.8337 0.83371653 1270 Karp_01078 yes yes 0 0 0 1 By MS/MS 1 54.821 55.072 3 0.022792 20488 20181213_JW_Orientia_Karp_2_3 88.101 37.009 0 0 0 0 0 0 0 0 0 4217 1270 3686 25838 16842 16842 1 ILGLAIESQDAGIK Unmodified 1426.8031 0.80314468 187 A0A024R9R8;A8K287;O00161-2;O00161;H3BNE1;H3BR18;H3BM38;H3BPJ0 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.986 60.279 2 0.00078737 23303 20181213_JW_Orientia_Karp_2_3 140.14 78.377 56881000 11097000 9213900 12986000 5139000 9223900 7383200 1837400 0 4218 187 3687 25839;25840;25841;25842;25843;25844;25845 16843;16844;16845;16846;16847 16847 5 ILGLLDAYLK Unmodified 1117.6747 0.67469669 1634 Q53YD7;P26641;P26641-2;B4DUP0;B4DUK7 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 72.713 72.788 2 0.0014941 33173 20181213_JW_Orientia_Karp_1_3 117.89 80.162 26135000 9398400 3797300 6061700 0 0 0 6878000 0 4219 1634 3688 25846;25847;25848;25849 16848;16849 16849 2 ILGLLGK Unmodified 712.48471 0.48471107 2005 Q9UPM8-2;Q9UPM8;H0YK94;H0YK95;H0YL95;B4DM48 AP4E1 AP-4 complex subunit epsilon-1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 43.021 43.121 2 0.022267 15092 20181213_JW_Orientia_Karp_1_1 99.511 0 13672000 10752000 0 2919700 0 0 0 0 0 4220 2005 3689 25850;25851 16850;16851 16850 2 ILGLSQIPNAGDAVAVVQNEK Unmodified 2135.1586 0.15863249 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 67.704 67.906 2;3 9.6843E-09 26488 20181213_JW_Orientia_Karp_3_2 162.44 127.09 241060000 54100000 36553000 49741000 0 40079000 21410000 20499000 18679000 4221 1366 3690 25852;25853;25854;25855;25856;25857;25858;25859;25860;25861;25862;25863;25864;25865 16852;16853;16854;16855;16856;16857;16858;16859;16860 16859 9 ILGLSQIPNAGDAVAVVQNEK Deamidation (NQ) 2136.1426 0.14264808 1366 Karp_01876 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 3 3 2 1 3 1 2 70.177 70.291 2;3 2.7445E-16 31256 20181213_JW_Orientia_Karp_1_1 180.93 121.03 75003000 19927000 23795000 10635000 0 2593600 5968900 6608100 5475400 4222 1366 3690 25866;25867;25868;25869;25870;25871;25872;25873;25874;25875;25876;25877;25878;25879;25880 16861;16862;16863;16864;16865;16866 16861 826;827 5 ILGPGLNK Unmodified 810.49634 0.49633839 1738 P62906;A0A024RCW3;Q1JQ76 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 37.672 37.993 2 0.014813 11857 20181213_JW_Orientia_Karp_1_2 96.048 18.104 35710000 13091000 6811300 7214500 951600 5622100 500190 1519500 0 4223 1738 3691 25881;25882;25883;25884;25885;25886;25887 16867;16868 16868 2 ILHIQTHEK Unmodified 1117.6244 0.62439245 1534 O95786-2;O95786;B3KWW1;B3KN51;A2A376 DDX58 Probable ATP-dependent RNA helicase DDX58 yes no 0 0 0 0 By MS/MS 1 20.861 21.059 3 0.033982 4103 20181213_JW_Orientia_Karp_1_3 69.423 4.1713 0 0 0 0 0 0 0 0 0 4224 1534 3692 25888 16869 16869 1 ILHQHLGAPEER Unmodified 1398.7368 0.73679645 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14;Q9NZM1-5 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 25.373 25.753 3 0.0049732 6508 20181213_JW_Orientia_Karp_1_1 92.112 51.523 24102000 5477400 9936400 0 1547700 2236500 1042900 2579600 1281400 4225 1991 3693 25889;25890;25891;25892;25893;25894;25895;25896 16870;16871;16872;16873 16870 4 ILIANTGMDTDK Oxidation (M) 1306.6439 0.64386684 923 F8VQ14;F5GWF6;V9HW96;P78371;P78371-2 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 0 0 1 0 By MS/MS By matching 1 1 39.764 40.09 2 0.031963 13440 20181213_JW_Orientia_Karp_1_1 74.533 29.165 27247000 18848000 0 0 0 0 0 8398400 0 4226 923 3694 25897;25898 16874 16874 1 ILIANTGMDTDK Unmodified 1290.649 0.64895222 923 F8VQ14;F5GWF6;V9HW96;P78371;P78371-2 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 0 0 0 0 By matching By MS/MS 1 1 46.805 46.98 2 0.040097 16828 20181213_JW_Orientia_Karp_1_2 73.499 37.075 25738000 17033000 8704700 0 0 0 0 0 0 4227 923 3694 25899;25900 16875 16875 1 ILIEDWK Unmodified 915.50657 0.50656873 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314;A2VCQ4;K7EPW7 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 53.746 54.013 2 0.029015 21456 20181213_JW_Orientia_Karp_1_2 90.777 3.0224 163280000 110950000 8621600 6202200 8261700 9173100 20070000 0 0 4228 588 3695 25901;25902;25903;25904;25905;25906 16876;16877 16876 2 ILIPDTAK Unmodified 869.52222 0.52221879 1297 Karp_01188 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 44.073 44.4 2 0.031504 15698 20181213_JW_Orientia_Karp_1_1 81.784 44.225 21610000000 9946200000 6646300000 3291800000 0 0 18017000 1706300000 1080600 4229 1297 3696 25907;25908;25909;25910;25911;25912 16878 16878 1 ILLAELEQLK Unmodified 1168.7067 0.7067251 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 8 7 8 2 4 3 4 5 65.591 65.784 1;2 2.0892E-06 24931 20181213_JW_Orientia_Karp_2_3 179.37 101.22 6468100000 1823100000 1066400000 1716700000 85433000 864710000 641310000 5256400 265140000 4230 1571 3697 25913;25914;25915;25916;25917;25918;25919;25920;25921;25922;25923;25924;25925;25926;25927;25928;25929;25930;25931;25932;25933;25934;25935;25936;25937;25938;25939;25940;25941;25942;25943;25944;25945;25946;25947;25948;25949;25950;25951;25952;25953 16879;16880;16881;16882;16883;16884;16885;16886;16887;16888;16889;16890;16891;16892;16893;16894;16895;16896;16897;16898;16899 16894 18 ILLDEQAQWK Unmodified 1242.6608 0.66083754 409 B7Z316;J3QQR8;J3QQX6;J3QRQ1;J3QRT5;D3DU30;Q6FHE2;A8KAP5;Q59ED3;P13598 ICAM2 Intercellular adhesion molecule 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.473 52.818 2 4.4297E-06 20503 20181213_JW_Orientia_Karp_1_3 173.39 85.215 155590000 42068000 43428000 29904000 15185000 10973000 11927000 1289500 811780 4231 409 3698 25954;25955;25956;25957;25958;25959;25960;25961 16900;16901;16902;16903;16904;16905;16906;16907 16903 8 ILMGFSDISVLHIYLQNK Oxidation (M) 2106.1183 0.11834758 1150 Karp_00511 yes yes 0 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 70.219 70.377 3 0.021217 27836 20181213_JW_Orientia_Karp_3_2 74.89 54.451 32866000 10731000 3319400 3507800 2416600 4097100 0 5607300 3187200 4232 1150 3699 25962;25963;25964;25965;25966;25967;25968 16908;16909 16909 683 2 ILMLLTNSVNIR Unmodified 1385.8065 0.80645592 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 65.924 66.175 2 0.014284 29196 20181213_JW_Orientia_Karp_1_2 90.827 48.025 3767800 0 2144900 0 0 0 566010 1056900 0 4233 1168 3700 25969;25970;25971 16910 16910 1 ILNDLNMVIK Deamidation (NQ) 1172.6475 0.64749566 1532 O95342 ABCB11 Bile salt export pump yes yes 0 1 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 58.549 58.76 2 0.031747 24531 20181213_JW_Orientia_Karp_1_2 85.676 12.428 27085000 11651000 4838200 5501100 0 2323400 2771100 0 0 4234 1532 3701 25972;25973;25974;25975;25976 16911 16911 1024 1 ILNFINNEIK Unmodified 1216.6816 0.68157298 1216 Karp_00883 yes yes 0 0 0 0 By MS/MS 1 57.367 57.367 2 0.015933 24018 20181213_JW_Orientia_Karp_1_1 106.88 44.773 0 0 0 0 0 0 0 0 0 4235 1216 3702 25977 16912 16912 1 ILNVHLQK Unmodified 963.58655 0.58655038 1458 Karp_02603 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 33.524 33.866 2 0.0044426 9754 20181213_JW_Orientia_Karp_1_3 131.04 67.472 34460000 10960000 10462000 10103000 1243700 0 0 0 1691400 4236 1458 3703 25978;25979;25980;25981;25982 16913;16914;16915 16914 3 ILNVVGQPIDDLGPIK Unmodified 1689.9665 0.96652161 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 67.391 67.603 2 3.9648E-09 23738 20181213_JW_Orientia_Karp_3_1 187.62 113.9 756090000 185080000 140980000 112030000 19524000 106240000 53718000 88593000 49928000 4237 1341 3704 25983;25984;25985;25986;25987;25988;25989;25990;25991 16916;16917;16918;16919;16920;16921 16920 6 ILPVFDEPPNPTNVEESLK Unmodified 2137.0943 0.094300901 1845 Q5HYL6;Q9NYL9;H0YKU1;H0YNJ8 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 69.59 69.762 2 6.9101E-05 24998 20181213_JW_Orientia_Karp_3_1 138.55 83.898 76729000 23665000 18769000 0 0 7467300 0 16633000 10196000 4238 1845 3705 25992;25993;25994;25995;25996 16922;16923;16924;16925;16926 16925 5 ILQDGGLQVVEK Unmodified 1297.7242 0.72416608 1505 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.218 48.563 2 2.6516E-07 17815 20181213_JW_Orientia_Karp_1_2 184.03 100.25 116740000 35321000 41472000 20990000 7527500 2258200 3950000 171390 5054200 4239 1505 3706 25997;25998;25999;26000;26001;26002;26003;26004 16927;16928;16929;16930;16931;16932 16928 6 ILQINGEDVQNR 3 Deamidation (NQ) 1400.6783 0.6783381 568 B4DG65;B4DGD1;Q6ZMN7-4;Q6ZMN7-2;Q6ZMN7 PDZRN4 PDZ domain-containing RING finger protein 4 yes no 0 3 0 0 By MS/MS 1 40.801 41.452 3 0.032356 13052 20181213_JW_Orientia_Karp_3_1 69.01 6.2108 8014800 0 0 0 0 0 0 8014800 0 4240 568 3707 26005 16933 16933 201;1521;1522 1 ILQIPAIK Unmodified 894.59024 0.59023878 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.351 54.686 2 0.0057518 21604 20181213_JW_Orientia_Karp_1_3 124.59 27.122 203330000 61080000 41028000 0 14450000 26640000 56104000 0 4032900 4241 1118 3708 26006;26007;26008;26009;26010;26011;26012 16934;16935;16936;16937;16938;16939;16940 16936 7 ILQLLLESPK Unmodified 1152.7118 0.71181048 1253 Karp_00933 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 62.452 62.695 2 0.00039787 24444 20181213_JW_Orientia_Karp_2_3 138.08 81.032 63958000 19859000 9771900 19580000 0 4832000 4855400 0 5058900 4242 1253 3709 26013;26014;26015;26016;26017;26018 16941;16942;16943;16944 16943 4 ILQLNFEAAMQEK Oxidation (M);2 Deamidation (NQ) 1551.7491 0.7490602 311 A6H8Z6;Q6ZSL5;B9EG73;B7ZVX0;Q9BZ29-6;Q9BZ29-3;Q9BZ29-5;Q9BZ29;Q9BZ29-4 DOCK9 Dedicator of cytokinesis protein 9 yes no 0 2 1 0 By MS/MS 1 52.868 53.478 2 0.030171 18391 20181213_JW_Orientia_Karp_3_2 88.056 41.238 6385400 0 0 0 0 0 0 0 6385400 4243 311 3710 26019 16945 16945 1374;1375 1 ILQLSNQK Unmodified 942.54983 0.54983053 1160 Karp_00595 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 2 34.079 34.472 2 0.0016054 10567 20181213_JW_Orientia_Karp_1_1 166.68 56.559 1198400000 274550000 351790000 442850000 54444000 0 0 67529000 7203900 4244 1160 3711 26020;26021;26022;26023;26024;26025;26026;26027;26028 16946;16947;16948;16949;16950;16951 16946 6 ILQNMIIADENK Oxidation (M) 1416.7283 0.72826518 1188 Karp_00703 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.343 43.663 2 4.2365E-11 13689 20181213_JW_Orientia_Karp_3_2 195.83 119.66 73631000 9605800 17930000 21539000 5483400 1808900 7317900 7638000 2307900 4245 1188 3712 26029;26030;26031;26032;26033;26034;26035;26036 16952;16953;16954;16955;16956;16957;16958 16958 753 7 ILQNMIIADENK Unmodified 1400.7334 0.73335055 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 51.624 51.969 2 7.8319E-23 20469 20181213_JW_Orientia_Karp_1_1 230.95 139.69 100560000 21949000 24811000 31018000 7852300 5636000 3187400 4768700 1339100 4246 1188 3712 26037;26038;26039;26040;26041;26042;26043;26044 16959;16960;16961;16962 16959 4 ILQNQQNSSSISLNSIISK Unmodified 2073.1066 0.10659692 1366 Karp_01876 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 57.517 57.766 2 2.4356E-12 23871 20181213_JW_Orientia_Karp_1_2 180.56 141.14 14869000 4954100 5644100 3008600 1261900 0 0 0 0 4247 1366 3713 26045;26046;26047;26048 16963 16963 1 ILQNQQNSSSISLNSIISK Deamidation (NQ) 2074.0906 0.090612506 1366 Karp_01876 yes yes 0 1 0 0 By MS/MS 1 62.386 62.585 2 0.020254 26556 20181213_JW_Orientia_Karp_1_3 88.507 54.243 0 0 0 0 0 0 0 0 0 4248 1366 3713 26049 16964 16964 828;829 1 ILQNQQNSSSISLNSIISKPQNK Unmodified 2540.3558 0.35582875 1366 Karp_01876 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 49.864 50.237 3 0.0068636 18895 20181213_JW_Orientia_Karp_1_2 84.371 61.996 106870000 22989000 30124000 19659000 15420000 0 11386000 1068400 6228300 4249 1366 3714 26050;26051;26052;26053;26054;26055;26056 16965;16966;16967 16966 3 ILQNQQNSSSISLNSIISKPQNK Deamidation (NQ) 2541.3398 0.33984433 1366 Karp_01876 yes yes 0 1 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.728 49.073 3 1.1738E-06 17075 20181213_JW_Orientia_Karp_2_1 136.53 113.24 51603000 7607300 10929000 6682900 7227900 3409500 9142300 175860 6428000 4250 1366 3714 26057;26058;26059;26060;26061;26062;26063;26064 16968;16969;16970 16968 828;829 3 ILQSNYPER Unmodified 1118.572 0.57202253 1413 Karp_02239 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 33.22 33.593 2 0.0051352 9365 20181213_JW_Orientia_Karp_3_1 103.7 40.986 553320000 179550000 125680000 154620000 33319000 9612400 0 42891000 7655100 4251 1413 3715 26065;26066;26067;26068;26069;26070;26071 16971;16972;16973;16974 16974 4 ILRNELSANIVYK Deamidation (NQ) 1532.8562 0.85624288 1099 Karp_00263 yes yes 0 1 0 1 By matching By MS/MS By matching By matching 1 1 1 1 48.6 48.849 3 0.02471 17789 20181213_JW_Orientia_Karp_1_3 79.089 26.055 14175000 5690000 0 2839300 3435300 0 2209900 0 0 4252 1099 3716 26072;26073;26074;26075 16975 16975 453 0 ILRPWQSSETR Unmodified 1371.7259 0.72589741 107 A0A024R588;A0A024R566;B4DJU4;A0A024R5D9;A0A024R572;Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;B4DSE4;Q15637-7;Q15637-5;B4DX42 SF1 Splicing factor 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.856 35.173 3 0.00013986 9669 20181213_JW_Orientia_Karp_2_1 159.09 96.92 109650000 40052000 0 30933000 7248400 10413000 3445600 17562000 0 4253 107 3717 26076;26077;26078;26079;26080;26081;26082 16976;16977;16978;16979;16980;16981;16982 16979 7 ILSEYLINK Unmodified 1091.6227 0.62266112 1062 Karp_00006 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.177 51.427 2 8.2614E-05 20081 20181213_JW_Orientia_Karp_1_1 190.52 105.6 213840000 36034000 47719000 60168000 30867000 16328000 22722000 0 0 4254 1062 3718 26083;26084;26085;26086;26087;26088;26089 16983;16984;16985;16986;16987;16988;16989 16983 7 ILSGIQVTGK Unmodified 1014.6073 0.6073454 1369 Karp_01981 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 43.385 43.701 2 0.00017414 14193 20181213_JW_Orientia_Karp_3_1 146.11 51.798 144920000 44123000 51418000 34475000 8613300 0 735010 5559500 0 4255 1369 3719 26090;26091;26092;26093;26094;26095 16990;16991;16992;16993;16994 16994 5 ILSISADIETIGEILK Unmodified 1713.9764 0.9764176 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5T6W2;Q5T6W1 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 75.378 75.404 2 0.0042082 30522 20181213_JW_Orientia_Karp_3_2 128.21 84.711 13323000 0 2812200 0 1708200 2103600 1003500 4822800 872800 4256 63 3720 26096;26097;26098;26099;26100;26101 16995 16995 1 ILSNVFCLIKK Deamidation (NQ) 1334.7632 0.76319412 294 Q149N2;H0Y7H7;Q149N6;A4D0S8;H0Y599;Q149N5;Q8N1I0-2;Q8N1I0;Q8N1I0-3 DOCK4 Dedicator of cytokinesis protein 4 yes no 0 1 0 1 By MS/MS 1 65.289 65.538 2 0.031252 28688 20181213_JW_Orientia_Karp_1_2 84.743 20.323 0 0 0 0 0 0 0 0 0 4257 294 3721 26102 16996 16996 114 1 ILSPENTVIQNEDYDDPYLVVAADK Unmodified 2820.3705 0.37053534 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 70.393 70.509 2;3 1.9159E-11 28566 20181213_JW_Orientia_Karp_2_1 210.32 171.57 965900000 278480000 197480000 196090000 0 87005000 72510000 134340000 0 4258 1449 3722 26103;26104;26105;26106;26107;26108;26109;26110;26111;26112;26113;26114;26115;26116 16997;16998;16999;17000;17001;17002;17003;17004;17005;17006 17001 10 ILSPENTVIQNEDYDDPYLVVAADK Deamidation (NQ) 2821.3546 0.35455093 1449 Karp_02529 yes yes 0 1 0 0 By matching By MS/MS 1 1 72.079 72.154 2 0.011711 33193 20181213_JW_Orientia_Karp_1_2 69.935 32.351 14289000 5663200 8626200 0 0 0 0 0 0 4259 1449 3722 26117;26118 17007 17007 971 1 ILSYFLNNTEIYSPNK Deamidation (NQ) 1915.9567 0.95674479 1353 Karp_01624 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 68.327 68.542 2 0.00069746 30860 20181213_JW_Orientia_Karp_1_1 138.89 108.07 21132000 11487000 0 5179400 3084200 0 0 0 1381900 4260 1353 3723 26119;26120;26121;26122 17008;17009;17010 17008 811 3 ILSYFLNNTEIYSPNK Unmodified 1914.9727 0.9727292 1353 Karp_01624 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 65.837 66.076 2 0.0002716 28779 20181213_JW_Orientia_Karp_1_3 142.39 89.181 14640000 0 3493800 5456300 821730 0 2029900 2838500 0 4261 1353 3723 26123;26124;26125;26126;26127;26128 17011;17012;17013 17012 3 ILTATVDNANVLLQIDNAR Unmodified 2053.1168 0.11676768 790 CON__P02533;P02533 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 68.083 68.325 2 8.5443E-24 27484 20181213_JW_Orientia_Karp_2_1 211.82 143.28 28185000 0 0 0 4123400 6880900 4540900 7438300 5201200 + 4262 790 3724 26129;26130;26131;26132;26133 17014;17015;17016;17017 17014 4 ILTIAEMNSLLR Unmodified 1372.7748 0.77482144 1286 Karp_01157 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 69.302 69.504 2 2.7043E-08 24840 20181213_JW_Orientia_Karp_3_1 194.17 121.29 12289000 0 2605800 4133400 0 0 0 3969900 1579700 4263 1286 3725 26134;26135;26136;26137;26138 17018;17019 17019 2 ILTPLVSLDTPGK Unmodified 1352.7915 0.79151736 392 B3KV49;B4DX01;B7Z403;A8K8F0;Q9Y3E8;Q9HC38-2;Q9HC38;I3L1I0 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 63.61 63.803 2 0.0038336 28056 20181213_JW_Orientia_Karp_1_1 115 70.801 37642000 9364400 0 18056000 858660 2986300 4241500 0 2134800 4264 392 3726 26139;26140;26141;26142;26143;26144;26145 17020;17021;17022;17023;17024 17020 5 ILTSDVFQDCNK Unmodified 1438.6762 0.67622961 1466;1549 L8E853;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.739 50.041 2 6.7537E-08 18720 20181213_JW_Orientia_Karp_1_2 192.44 144.48 196750000 43873000 58815000 55502000 12282000 6281600 6954000 0 13041000 4265 1466;1549 3727 26146;26147;26148;26149;26150;26151;26152 17025;17026;17027;17028;17029;17030 17026 6 ILVALCGGN Unmodified 915.48479 0.48478743 1548 Q5TZZ9;P04083;B5BU38;Q05BR2 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 60.746 61.049 2 0.00080249 22447 20181213_JW_Orientia_Karp_3_2 139.92 116.9 31603000 0 0 4115000 0 2062500 6847700 0 18578000 4266 1548 3728 26153;26154;26155;26156;26157 17031;17032;17033;17034;17035;17036 17036 6 ILVATNLFGR Unmodified 1102.6499 0.64987892 245 Q5STU3;A0A024RCM3;B4DX78;O00148;Q13838;Q13838-2;B4DP52;Q69YT6;H0Y400 DDX39B;hCG_2005638;DDX39A;DKFZp547B159 ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 61.022 61.322 2 1.0715E-06 26257 20181213_JW_Orientia_Karp_1_2 186.41 123.86 23460000 0 18823000 0 0 0 4636600 0 0 4267 245 3729 26158;26159;26160;26161 17037;17038;17039;17040 17038 4 ILVDASYPNETR Unmodified 1376.6936 0.69359423 1362 Karp_01816 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.646 46.966 2 0.014855 17120 20181213_JW_Orientia_Karp_1_1 89.9 62.571 259080000 101170000 57793000 50842000 6074100 7742300 16419000 3262700 15776000 4268 1362 3730 26162;26163;26164;26165;26166;26167;26168;26169 17041;17042 17041 1 ILVDASYPNETR Deamidation (NQ) 1377.6776 0.67760981 1362 Karp_01816 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 50.634 50.941 2 0.0067055 19250 20181213_JW_Orientia_Karp_1_3 113.63 84.156 48389000 11835000 10737000 8090000 5402600 3494600 4766200 4064200 0 4269 1362 3730 26170;26171;26172;26173;26174;26175;26176 17043;17044 17044 823 2 ILWGVYDHE Unmodified 1130.5397 0.53965977 1325 Karp_01349 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 58.073 58.326 2 0.030439 24655 20181213_JW_Orientia_Karp_1_1 77.741 47.129 32243000 23755000 0 0 0 4065800 4074100 0 347770 4270 1325 3731 26177;26178;26179;26180 17045 17045 1 ILYAIVPAGVDVNK Unmodified 1470.8446 0.84461556 1288 Karp_01160 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 63.053 63.311 2 0.0019504 27688 20181213_JW_Orientia_Karp_1_1 126.19 55.795 40273000 7673800 9713700 14631000 684860 3348600 2875800 0 1344800 4271 1288 3732 26181;26182;26183;26184;26185;26186;26187 17046;17047 17046 2 ILYNPLQGQK Unmodified 1172.6554 0.65535823 579 B4DI61;Q6FI18;Q53FA4;O00622 CYR61 Protein CYR61 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.169 49.521 2 9.625E-07 16272 20181213_JW_Orientia_Karp_3_2 187.34 118.14 104090000 0 26254000 15223000 25440000 13950000 16427000 0 6795900 4272 579 3733 26188;26189;26190;26191;26192;26193 17048;17049;17050;17051;17052;17053;17054 17054 7 ILYQYDLVLGK Unmodified 1323.7438 0.74383889 1216 Karp_00883 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 62.248 62.589 2 0.0019536 24617 20181213_JW_Orientia_Karp_2_1 118.03 65.248 26150000 0 0 0 2513400 10091000 6791500 0 6754300 4273 1216 3734 26194;26195;26196;26197 17055;17056;17057;17058;17059 17055 5 IMAGLDK Oxidation (M) 762.39458 0.39457544 1315 Karp_01271 yes yes 0 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 26.933 27.27 2 0.040343 6423 20181213_JW_Orientia_Karp_3_1 78.616 20.448 33046000 9129900 18752000 0 2551800 0 0 2612200 0 4274 1315 3735 26198;26199;26200;26201 17060 17060 1 IMDIVDVANGFGR Oxidation (M);Deamidation (NQ) 1422.6813 0.68131498 1256 Karp_00936 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 1 61.49 61.775 2 3.0526E-11 25813 20181213_JW_Orientia_Karp_1_1 202.31 140.61 187920000 36452000 39723000 61694000 11820000 20363000 16695000 1176500 0 4275 1256 3736 26202;26203;26204;26205;26206;26207;26208;26209;26210;26211;26212;26213;26214;26215;26216 17061;17062;17063;17064;17065;17066;17067;17068;17069;17070;17071;17072 17061 669 820 12 IMDIVDVANGFGR Deamidation (NQ) 1406.6864 0.68640036 1256 Karp_00936 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 2 2 2 2 69.044 69.207 2 6.14E-11 30157 20181213_JW_Orientia_Karp_1_2 197.73 144.14 148670000 55635000 9359200 44483000 0 8858100 8808600 15829000 5697200 4276 1256 3736 26217;26218;26219;26220;26221;26222;26223;26224;26225;26226;26227;26228;26229;26230;26231;26232 17073;17074;17075;17076;17077;17078;17079;17080;17081;17082;17083;17084 17075 669 10 IMDIVDVANGFGR Unmodified 1405.7024 0.70238478 1256 Karp_00936 yes yes 0 0 0 0 By MS/MS By matching 1 1 68.378 68.627 2 0.011458 30704 20181213_JW_Orientia_Karp_1_2 96.756 59.411 2105300 0 1564600 0 540700 0 0 0 0 4277 1256 3736 26233;26234 17085 17085 1 IMDPNIVGSEHYDVAR Oxidation (M) 1830.857 0.85704752 1560 Q0QEN7;V9HW31;P06576;H0YH81 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 43.565 43.908 3 0.0077296 13732 20181213_JW_Orientia_Karp_3_2 95.662 54.261 209180000 59235000 0 73222000 23022000 0 12517000 39637000 1542400 4278 1560 3737 26235;26236;26237;26238;26239;26240 17086;17087;17088;17089 17089 1172 4 IMDPNIVGSEHYDVAR Unmodified 1814.8621 0.8621329 1560 Q0QEN7;V9HW31;P06576;H0YH81 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 48.089 48.422 3 0.026791 17466 20181213_JW_Orientia_Karp_1_3 89.624 45.633 185020000 51435000 79553000 36484000 13650000 0 3839800 55478 0 4279 1560 3737 26241;26242;26243;26244;26245;26246 17090 17090 1 IMEDSPMISNTPLPR Oxidation (M) 1715.8222 0.82224192 1291 Karp_01169 yes yes 0 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 53.118 53.418 2 0.00013616 21093 20181213_JW_Orientia_Karp_1_2 148.18 98.883 19864000 5741500 6303200 6904600 0 0 0 914990 0 4280 1291 3738 26247;26248;26249;26250 17091 17091 846;847 1 IMEDSPMISNTPLPR 2 Oxidation (M) 1731.8172 0.81715654 1291 Karp_01169 yes yes 0 0 2 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 48.198 48.505 2 0.00053612 16558 20181213_JW_Orientia_Karp_2_2 134.75 95.174 33333000 13978000 7082900 5889000 2837900 1508000 1731000 306440 0 4281 1291 3738 26251;26252;26253;26254;26255;26256;26257 17092;17093;17094;17095 17094 846;847 4 IMEGTIALVPPQGGR Oxidation (M) 1553.8236 0.82356254 1435 Karp_02393 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.226 52.62 2 3.256E-10 18917 20181213_JW_Orientia_Karp_2_2 194.96 144.51 59001000 0 14153000 17500000 6852500 6526600 5930100 6815000 1223700 4282 1435 3739 26258;26259;26260;26261;26262;26263;26264 17096;17097;17098;17099;17100;17101 17099 1039 6 IMEGTIALVPPQGGR Unmodified 1537.8286 0.82864792 1435 Karp_02393 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 57.665 57.915 2 0.016145 24004 20181213_JW_Orientia_Karp_1_2 88.056 45.501 52462000 19415000 10041000 18313000 3185700 0 1506800 0 0 4283 1435 3739 26265;26266;26267;26268;26269 17102;17103 17102 2 IMEIMLPTLR Oxidation (M) 1231.6669 0.66685089 1118 Karp_00308 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 66.339 66.499 2 6.2909E-05 29310 20181213_JW_Orientia_Karp_1_2 150.08 92.116 52540000 20920000 8880000 9270800 0 4476000 3118200 0 5874700 4284 1118 3740 26270;26271;26272;26273;26274;26275 17104;17105;17106;17107;17108;17109 17105 636;637 6 IMEIMLPTLR Unmodified 1215.6719 0.67193627 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 69.743 69.853 2 2.4091E-05 31801 20181213_JW_Orientia_Karp_1_1 161.27 91.211 19046000 6547800 0 7665200 0 1650300 597460 2584900 0 4285 1118 3740 26276;26277;26278;26279;26280 17110;17111 17110 2 IMEIMLPTLR 2 Oxidation (M) 1247.6618 0.66176551 1118 Karp_00308 yes yes 0 0 2 0 By MS/MS 1 59.867 60.118 2 0.020091 22907 20181213_JW_Orientia_Karp_2_2 77.533 6.0321 7539900 0 0 0 0 7539900 0 0 0 4286 1118 3740 26281 17112 17112 636;637 1 IMGIPEEEQMGLLR 2 Oxidation (M) 1646.8008 0.80077819 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.8 53.145 2 0.00016852 21178 20181213_JW_Orientia_Karp_1_1 153.54 105.56 334200000 116060000 81110000 70052000 14714000 15065000 10441000 24445000 2314300 4287 47 3741 26282;26283;26284;26285;26286;26287;26288;26289 17113;17114;17115;17116;17117;17118;17119 17113 40;41 7 IMGIPEEEQMGLLR Unmodified 1614.8109 0.81094895 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 65.375 65.565 2 0.0012245 28705 20181213_JW_Orientia_Karp_1_2 132.86 85.907 121110000 40194000 42545000 28291000 0 0 1606000 8471900 0 4288 47 3741 26290;26291;26292;26293;26294 17120;17121;17122 17121 3 IMIHQPSGGFR Oxidation (M) 1257.6288 0.6288259 1352 Karp_01574 yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 34.219 34.552 3 0.0093653 9267 20181213_JW_Orientia_Karp_2_1 92.611 67.735 371240000 119510000 110960000 49567000 22757000 40241000 0 28209000 0 4289 1352 3742 26295;26296;26297;26298;26299;26300;26301 17123;17124;17125;17126 17124 929 4 IMIHQPSGGFR Unmodified 1241.6339 0.63391128 1352 Karp_01574 yes yes 0 0 0 0 By matching By MS/MS 1 1 36.567 36.792 3 0.023464 10155 20181213_JW_Orientia_Karp_2_2 64.439 29.215 95466000 0 0 91543000 0 3923000 0 0 0 4290 1352 3742 26302;26303 17127 17127 1 IMKNEIQDLQTK Oxidation (M) 1475.7654 0.76537896 678 B4E1L5;Q5D1D5;P32455;B4DNS2 GBP1 Interferon-induced guanylate-binding protein 1 yes no 0 0 1 1 By matching By MS/MS By matching By matching 1 1 1 1 45.678 45.943 2 0.010142 16039 20181213_JW_Orientia_Karp_1_2 160.82 43.296 55944000 15508000 17553000 17123000 0 0 0 0 5760400 4291 678 3743 26304;26305;26306;26307 17128 17128 417 1 IMNTFSVMPSPK Unmodified 1350.6676 0.66757917 1964 Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386;K7ES63 TUBB6 Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 55.812 55.995 2 4.939E-05 22669 20181213_JW_Orientia_Karp_1_2 167.2 107.1 27646000 8280500 7877400 11488000 0 0 0 0 0 4292 1964 3744 26308;26309;26310 17129;17130 17130 2 IMNTFSVVPSPK Oxidation (M) 1334.6904 0.69042311 1566;1747;1550 P04350;B4DE77;M0R2D3;M0QYM7;M0R042;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 1 49.995 50.29 2 1.4431E-16 17916 20181213_JW_Orientia_Karp_2_3 215.04 130.22 707140000 152650000 154900000 145600000 103400000 51339000 98317000 0 924560 4293 1550;1566;1747 3745 26311;26312;26313;26314;26315;26316;26317;26318;26319 17131;17132;17133;17134;17135;17136 17136 1154 6 IMNTFSVVPSPK Oxidation (M);Deamidation (NQ) 1335.6744 0.67443869 1566;1747;1550 P04350;B4DE77;M0R2D3;M0QYM7;M0R042;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 1 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 1 1 2 1 53.378 53.733 2 0.001135 21326 20181213_JW_Orientia_Karp_1_1 139.86 68.244 252990000 138770000 15368000 49809000 14919000 10072000 12529000 5154600 6366700 4294 1550;1566;1747 3745 26320;26321;26322;26323;26324;26325;26326;26327;26328;26329;26330;26331 17137;17138;17139;17140;17141;17142 17138 1033 1154 6 IMNTFSVVPSPK Unmodified 1318.6955 0.69550848 1566;1747;1550 P04350;B4DE77;M0R2D3;M0QYM7;M0R042;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.989 55.347 2 1.749E-24 21984 20181213_JW_Orientia_Karp_1_3 240.85 165.74 563490000 211620000 135540000 146790000 17271000 26049000 17840000 2626900 5751700 4295 1550;1566;1747 3745 26332;26333;26334;26335;26336;26337;26338;26339 17143;17144;17145;17146;17147;17148;17149 17145 7 IMNTFSVVPSPK Deamidation (NQ) 1319.6795 0.67952407 1566;1747;1550 P04350;B4DE77;M0R2D3;M0QYM7;M0R042;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 58.168 58.468 2 0.0010002 24729 20181213_JW_Orientia_Karp_1_1 148.28 98.744 75402000 22112000 22102000 27055000 1642300 2455300 0 34194 0 4296 1550;1566;1747 3745 26340;26341;26342;26343;26344;26345 17150;17151 17150 1033 2 IMNVIGEPIDER Oxidation (M) 1400.697 0.69696505 1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W079 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 48.202 48.547 2 0.0013929 15676 20181213_JW_Orientia_Karp_3_2 125.72 73.231 198790000 44769000 54308000 41373000 19589000 7186800 9015400 566350 21982000 4297 1560 3746 26346;26347;26348;26349;26350;26351;26352;26353 17152;17153;17154;17155 17155 1173 4 IMNVIGEPIDER Unmodified 1384.7021 0.70205043 1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W079 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 54.435 54.751 2 0.0004155 22311 20181213_JW_Orientia_Karp_1_1 152.7 95.967 155680000 34574000 33982000 65136000 6470600 7821100 5775000 0 1917500 4298 1560 3746 26354;26355;26356;26357;26358;26359;26360 17156;17157;17158;17159;17160 17156 5 IMQILGFDFTK Oxidation (M) 1327.6846 0.68460945 1421 Karp_02305 yes yes 0 0 1 0 By MS/MS 1 66.725 66.725 2 0.022947 29755 20181213_JW_Orientia_Karp_1_1 95.573 51.938 0 0 0 0 0 0 0 0 0 4299 1421 3747 26361 17161 17161 1022 1 IMSIVDPNR Oxidation (M) 1059.5383 0.53827956 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;A1L0V1;H0YJW3 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 38.724 38.999 2 0.0015083 12174 20181213_JW_Orientia_Karp_1_3 120.15 70.736 62230000 25619000 22998000 10507000 3105600 0 0 0 0 4300 133 3748 26362;26363;26364;26365 17162;17163;17164 17164 115 3 IMSSPLSK Oxidation (M) 877.4579 0.45790397 1039 J3KTJ8;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KSS0;E5RIT6;Q9UNX3;E5RHH1 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 28.26 28.666 2 0.0034559 6087 20181213_JW_Orientia_Karp_3_2 147.69 56.708 252050000 20763000 62543000 44237000 23086000 13309000 20208000 36852000 31054000 4301 1039 3749 26366;26367;26368;26369;26370;26371;26372;26373;26374;26375;26376;26377;26378;26379 17165;17166;17167;17168;17169;17170;17171;17172;17173 17173 568 9 IMTDALNAPEESK Unmodified 1417.6759 0.67589525 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.327 44.671 2 2.2196E-58 15281 20181213_JW_Orientia_Karp_1_3 276.17 211.52 2045600000 772650000 524290000 365580000 61174000 0 106910000 171640000 43354000 4302 1375 3750 26380;26381;26382;26383;26384;26385;26386 17174;17175;17176;17177;17178;17179;17180;17181;17182 17176 9 IMTDALNAPEESK Oxidation (M) 1433.6708 0.67080988 1375 Karp_02111 yes yes 0 0 1 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 1 4 3 2 1 40.057 40.333 2 2.7432E-34 11140 20181213_JW_Orientia_Karp_2_2 244.71 162.68 2610800000 456440000 558120000 452650000 488180000 148360000 198830000 300910000 7313300 4303 1375 3750 26387;26388;26389;26390;26391;26392;26393;26394;26395;26396;26397;26398;26399;26400;26401;26402;26403 17183;17184;17185;17186;17187;17188;17189 17184 966 7 IMTDALNAPEESKK Oxidation (M) 1561.7658 0.76577289 1375 Karp_02111 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1 1 31.729 32.001 3 9.1171E-09 8765 20181213_JW_Orientia_Karp_1_2 193.11 147.04 397950000 122620000 177530000 92483000 4944500 0 0 0 371280 4304 1375 3751 26404;26405;26406;26407;26408;26409;26410;26411 17190;17191;17192;17193;17194;17195;17196;17197 17192 966 8 IMTDALNAPEESKK Unmodified 1545.7709 0.77085827 1375 Karp_02111 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 36.732 37.032 3 0.00394 11345 20181213_JW_Orientia_Karp_1_2 123.28 57.013 459510000 202340000 134370000 115020000 0 0 0 7785600 0 4305 1375 3751 26412;26413;26414;26415 17198;17199;17200 17199 3 IMVANIEEVLQR Unmodified 1413.765 0.76498503 1521 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 By MS/MS 1 64.867 64.867 2 2.483E-05 28708 20181213_JW_Orientia_Karp_1_1 173.64 96.45 7138200 7138200 0 0 0 0 0 0 0 4306 1521 3752 26416 17201 17201 1 INAQFSVISPLPFQPER Unmodified 1942.0312 0.031247134 1392 Karp_02141 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 2 1 72.196 72.264 2;3 8.2763E-05 29527 20181213_JW_Orientia_Karp_2_1 144.51 106.32 144630000 8195900 49529000 0 12170000 14743000 18811000 41178000 0 4307 1392 3753 26417;26418;26419;26420;26421;26422;26423;26424 17202;17203 17203 2 INCILENSGDPSK Unmodified 1445.682 0.68204326 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 41.133 41.463 2 2.3093E-34 14088 20181213_JW_Orientia_Karp_1_1 248.19 181.27 231330000 102390000 40170000 20633000 8124400 10754000 0 39637000 9620700 4308 1126 3754 26425;26426;26427;26428;26429;26430;26431 17204;17205;17206;17207;17208;17209 17204 6 INCILENSGDPSK Deamidation (NQ) 1446.6661 0.66605885 1126 Karp_00329 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 44.143 44.487 2 0.0086739 15318 20181213_JW_Orientia_Karp_1_3 111.79 68.485 27259000 7799800 4324500 4814600 2200300 0 1362000 5838000 920160 4309 1126 3754 26432;26433;26434;26435;26436;26437;26438 17210;17211 17210 511 2 INDPYCNLR Unmodified 1163.5393 0.53934219 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.607 39.914 2 0.00068468 12446 20181213_JW_Orientia_Karp_2_3 152.06 87.494 383510000 121530000 61478000 86695000 30729000 12429000 7618600 63028000 0 4310 1396 3755 26439;26440;26441;26442;26443;26444;26445 17212;17213;17214;17215;17216;17217;17218 17217 7 INEAIVAVQAIIADPK Unmodified 1663.9509 0.95087155 1834 Q5RLJ0;Q549M8;Q9Y224 C14orf166 UPF0568 protein C14orf166 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 70.814 70.951 3 0.022506 31993 20181213_JW_Orientia_Karp_1_3 87.157 66.5 10713000 0 4897300 1923400 0 1579500 0 2313000 0 4311 1834 3756 26446;26447;26448;26449 17219 17219 1 INEILSNALK Unmodified 1113.6394 0.63937381 1701 P52272-2;P52272;Q7KYM9;Q59ES8;M0R019;B4DEG4 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.329 50.579 2 7.0656E-06 18933 20181213_JW_Orientia_Karp_1_3 166.66 92.356 121790000 32460000 40956000 21086000 12774000 5778700 8734600 0 0 4312 1701 3757 26450;26451;26452;26453;26454;26455 17220;17221;17222 17222 3 INEVEESLEAQLK Unmodified 1500.7672 0.7671531 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.159 54.516 2 1.7801E-34 22124 20181213_JW_Orientia_Karp_1_1 260.57 161.56 225230000 57684000 63333000 37909000 17696000 24139000 16498000 82721 7884300 4313 1428 3758 26456;26457;26458;26459;26460;26461;26462;26463 17223;17224;17225;17226;17227;17228;17229 17223 7 INEWLTK Unmodified 902.48617 0.48616764 622 B4DPW5;B7Z6G4;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682;E9PGZ1;B4E3I0;Q7Z2Y9;Q5HY93 CALD1;DKFZp686P03208;DKFZp779D0769 Caldesmon yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 42.504 42.767 2 0.0080811 13587 20181213_JW_Orientia_Karp_2_1 153.04 25.574 18623000 0 0 4958100 2763300 5511700 5389600 0 0 4314 622 3759 26464;26465;26466;26467;26468 17230;17231;17232;17233 17230 3 INFDDSALFR Unmodified 1196.5826 0.58258722 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 61.888 62.165 2 5.2366E-06 26392 20181213_JW_Orientia_Karp_1_3 171.33 105.87 89117000 0 0 38512000 0 36808000 9540300 0 4257800 4315 1121 3760 26469;26470;26471;26472;26473 17234;17235;17236 17235 3 INFFIEK Unmodified 909.496 0.49600404 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.654 54.92 2 0.004856 20146 20181213_JW_Orientia_Karp_2_1 163.67 48.948 607510000 113500000 104510000 122420000 17249000 77819000 172000000 0 0 4316 1251 3761 26474;26475;26476;26477;26478;26479;26480 17237;17238;17239;17240;17241;17242;17243 17240 7 INFFIEK Deamidation (NQ) 910.48002 0.48001963 1251 Karp_00928 yes yes 0 1 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 57.937 58.219 2 0.021104 24576 20181213_JW_Orientia_Karp_1_1 119.29 21.818 48658000 28101000 2023500 10255000 0 0 7475300 0 802270 4317 1251 3761 26481;26482;26483;26484;26485;26486 17244;17245 17244 651 2 INGVCDVCNSSSFQNR Deamidation (NQ) 1856.7781 0.77814527 1222 Karp_00889 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 44.218 44.454 2 0.0030806 15205 20181213_JW_Orientia_Karp_1_3 132.56 94.57 7401300 3624900 0 3441700 0 0 0 0 334670 4318 1222 3762 26487;26488;26489;26490 17246;17247;17248 17248 627;628 2 INIALLK Unmodified 783.52182 0.52182486 1107 Karp_00285 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.109 52.454 2 0.0028094 19015 20181213_JW_Orientia_Karp_2_3 172.39 28.099 2333400000 642300000 372440000 571500000 424080000 25688000 292550000 4688500 123400 4319 1107 3763 26491;26492;26493;26494;26495;26496;26497;26498 17249;17250;17251;17252;17253 17252 5 INIASPEQIR Unmodified 1139.6299 0.62987176 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.983 45.217 2 1.4224E-06 15248 20181213_JW_Orientia_Karp_2_3 183.43 115.94 1642700000 365700000 420530000 416110000 117170000 207710000 115470000 0 0 4320 1169 3764 26499;26500;26501;26502;26503;26504 17254;17255;17256;17257;17258;17259;17260;17261 17261 8 INIASYR Unmodified 835.4552 0.45520186 1131 Karp_00376 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 1 2 1 37.974 38.265 1;2 0.027092 11874 20181213_JW_Orientia_Karp_1_3 96.19 40.686 208480000 63866000 61156000 47171000 11232000 5068500 8568500 11422000 0 4321 1131 3765 26505;26506;26507;26508;26509;26510;26511;26512;26513;26514;26515;26516 17262;17263;17264 17263 2 INIIDTPGHVDFTIEVGR Unmodified 1995.0425 0.042540102 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 64.599 64.729 3 0.0057394 25505 20181213_JW_Orientia_Karp_2_3 98.077 59.081 114190000 33203000 22593000 18335000 0 10682000 29380000 0 0 4322 1094 3766 26517;26518;26519;26520;26521 17265;17266;17267;17268 17268 4 INIINMIGK Unmodified 1014.5896 0.58958685 1240 Karp_00907 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.408 59.669 2 0.00050445 25583 20181213_JW_Orientia_Karp_1_1 157.33 109.41 126470000 86678000 8870200 18816000 0 4917000 5756000 0 1431100 4323 1240 3767 26522;26523;26524;26525;26526;26527 17269;17270;17271;17272;17273;17274 17269 6 INIINMIGK Oxidation (M) 1030.5845 0.58450147 1240 Karp_00907 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.241 49.593 2 0.019214 18342 20181213_JW_Orientia_Karp_1_3 82.241 26.691 52644000 0 22214000 9416000 10318000 2171500 5603500 0 2921900 4324 1240 3767 26528;26529;26530;26531;26532;26533 17275 17275 802 1 INILTGIQPFHSR Unmodified 1494.8307 0.83069683 1121 Karp_00319 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 55.979 56.249 3 0.0039336 22591 20181213_JW_Orientia_Karp_1_3 98 54.008 88507000 31934000 0 8465900 0 11364000 10605000 26140000 0 4325 1121 3768 26534;26535;26536;26537;26538 17276 17276 1 INIMNEEKVNRVNK Oxidation (M);2 Deamidation (NQ) 1717.8669 0.86688392 157 A0A024R838;Q8N0T1 hCG_20884;C8orf59 Uncharacterized protein C8orf59 yes no 0 2 1 2 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 78.885 78.849 2 0.02991 32453 20181213_JW_Orientia_Karp_2_1 58.63 12.721 278780000 92299000 67666000 59645000 6348800 9311300 7232000 36282000 0 4326 157 3769 26539;26540;26541;26542;26543;26544;26545 17277 17277 64;65 0 INLTDSQDIIFR Unmodified 1433.7514 0.75144346 1369 Karp_01981 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 62.966 63.261 2 8.5415E-96 23741 20181213_JW_Orientia_Karp_3_2 317.75 205.34 543210000 201120000 37141000 146410000 12632000 77269000 41862000 688220 26092000 4327 1369 3770 26546;26547;26548;26549;26550;26551;26552;26553;26554 17278;17279;17280;17281;17282;17283;17284;17285;17286;17287 17286 10 INLTDSQDIIFRK Unmodified 1561.8464 0.84640648 1369 Karp_01981 yes yes 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 53.026 53.264 3 0.014516 21473 20181213_JW_Orientia_Karp_1_1 78.692 49.364 20699000 7091300 0 0 3782200 3715200 6110000 0 0 4328 1369 3771 26555;26556;26557;26558 17288 17288 1 INLTLYK Unmodified 863.51165 0.5116541 1437 Karp_02402 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.198 48.448 2 0.011655 16593 20181213_JW_Orientia_Karp_2_1 120.62 43.774 113370000 13009000 42420000 9474100 23650000 6787000 18033000 0 0 4329 1437 3772 26559;26560;26561;26562;26563;26564 17289;17290;17291;17292 17290 4 INLVSSIPNLIQVQK Unmodified 1664.9825 0.98250603 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 2 1 70.645 70.766 2;3 1.1223E-62 32187 20181213_JW_Orientia_Karp_1_2 282.21 190.55 138880000 16705000 40834000 20994000 841050 13760000 10436000 35310000 0 4330 1170 3773 26565;26566;26567;26568;26569;26570;26571;26572 17293;17294;17295;17296 17294 4 INNIALINYIFDIK Unmodified 1662.9345 0.9344932 1438 Karp_02403 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 75.567 75.596 2 0.014282 34999 20181213_JW_Orientia_Karp_1_3 73.36 0.43163 18135000 2434900 4986400 4241300 1873700 1713400 0 1938700 946840 4331 1438 3774 26573;26574;26575;26576;26577;26578;26579 17297 17297 0 INNSCYTSK Unmodified 1085.4812 0.48115861 1178 Karp_00644 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 20.172 20.321 2 0.0027611 3876 20181213_JW_Orientia_Karp_1_3 114.89 90.939 2679700 1108900 784250 786630 0 0 0 0 0 4332 1178 3775 26580;26581;26582 17298;17299 17299 2 INNTNLTALLK Unmodified 1213.703 0.7030367 1390 Karp_02139 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.229 54.496 2 2.7777E-25 19887 20181213_JW_Orientia_Karp_2_2 241.13 121.92 91504000 10239000 25127000 16333000 12547000 15088000 12170000 0 0 4333 1390 3776 26583;26584;26585;26586;26587;26588 17300;17301;17302;17303;17304;17305 17304 6 INNTNLTALLK Deamidation (NQ) 1214.6871 0.68705229 1390 Karp_02139 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.33 59.56 2 6.8616E-13 22853 20181213_JW_Orientia_Karp_2_3 220.82 111.34 293510000 20479000 0 22765000 9522900 89473000 151270000 0 0 4334 1390 3776 26589;26590;26591;26592;26593 17306;17307;17308;17309;17310 17310 875;876 5 INNTNLTALLK 2 Deamidation (NQ) 1215.6711 0.67106787 1390 Karp_02139 yes yes 0 2 0 0 By MS/MS By matching By matching 1 1 1 65.373 65.573 2 0.0051565 28382 20181213_JW_Orientia_Karp_1_3 115.7 39.6 4766400 0 0 2759000 153680 1853700 0 0 0 4335 1390 3776 26594;26595;26596 17311 17311 875;876 1 INPDGSQSVVEVPYAR Unmodified 1729.8635 0.8635131 941 F8W031;F8W1K5;F8VXJ7;Q9Y2B0 CNPY2 Protein canopy homolog 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.702 52.047 2 1.5027E-09 19996 20181213_JW_Orientia_Karp_1_3 192.4 130.58 176000000 26852000 33406000 43919000 20623000 16911000 12482000 19032000 2773300 4336 941 3777 26597;26598;26599;26600;26601;26602;26603;26604 17312;17313;17314;17315;17316;17317;17318;17319 17314 8 INPENISGSGK Unmodified 1114.5619 0.56185177 1417 Karp_02254 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 1 1 1 31.827 32.149 2 0.0064021 7857 20181213_JW_Orientia_Karp_2_2 102.05 54.088 182040000 35910000 50497000 38586000 9856800 8241900 6366200 32580000 0 4337 1417 3778 26605;26606;26607;26608;26609;26610;26611;26612 17320;17321;17322;17323;17324 17323 5 INPNTAYQKQQEDEK 5 Deamidation (NQ) 1809.7792 0.77923393 957 G3V5A2;Q6IN85-4 SMEK1 yes no 0 5 0 1 By matching By MS/MS 1 1 54.765 55.039 2 0.027474 21890 20181213_JW_Orientia_Karp_1_3 72.096 14.311 52706000 0 24236000 28470000 0 0 0 0 0 4338 957 3779 26613;26614 17325 17325 333;334;1730;1731;1732 1 INQNLPIDFAK Unmodified 1271.6874 0.68738664 1295 Karp_01184 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 55.39 55.706 2 6.886E-06 20806 20181213_JW_Orientia_Karp_2_3 176.6 86.229 74465000 26359000 18363000 13583000 4670800 5513800 5587000 0 388640 4339 1295 3780 26615;26616;26617;26618;26619;26620;26621 17326;17327;17328;17329;17330;17331 17331 6 INSGDLCSIAEVVR Unmodified 1531.7664 0.7664416 1310 Karp_01252 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 59.626 59.877 2;3 0.0010313 23117 20181213_JW_Orientia_Karp_2_3 135.91 73.218 2646900 0 0 0 0 0 2646900 0 0 4340 1310 3781 26622;26623 17332;17333 17333 2 INSLIPYIR Unmodified 1087.639 0.63897988 1339 Karp_01469 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 59.913 60.143 2 0.00061429 23109 20181213_JW_Orientia_Karp_2_1 154.12 60.923 92114000 40690000 0 19196000 1506100 14102000 16620000 0 0 4341 1339 3782 26624;26625;26626;26627;26628;26629;26630 17334;17335;17336;17337;17338;17339 17338 6 INSPAALSYATFGDSNQSR Unmodified 1997.9443 0.94428262 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 2 2 3 1 55.129 55.477 2 1.1119E-101 22893 20181213_JW_Orientia_Karp_1_2 337.68 260.83 5002100000 1136900000 1396100000 1135600000 591140000 369090000 351350000 20177000 1737200 4342 1107 3783 26631;26632;26633;26634;26635;26636;26637;26638;26639;26640;26641;26642;26643;26644;26645;26646;26647 17340;17341;17342;17343;17344;17345;17346;17347;17348;17349;17350;17351;17352;17353 17343 14 INSPAALSYATFGDSNQSR Deamidation (NQ) 1998.9283 0.9282982 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 3 5 5 3 4 3 1 58.7 59.007 2;3 1.333E-55 24804 20181213_JW_Orientia_Karp_1_3 270.99 226.48 733080000 267200000 84091000 179480000 67028000 66995000 57159000 1847000 9273400 4343 1107 3783 26648;26649;26650;26651;26652;26653;26654;26655;26656;26657;26658;26659;26660;26661;26662;26663;26664;26665;26666;26667;26668;26669;26670;26671;26672;26673;26674;26675 17354;17355;17356;17357;17358;17359;17360;17361;17362;17363;17364;17365;17366;17367;17368 17361 471;472;1805 12 INSPAALSYATFGDSNQSR 2 Deamidation (NQ) 1999.9123 0.91231379 1107 Karp_00285 yes yes 0 2 0 0 By MS/MS By matching 1 1 63.408 63.662 2 0.00011153 27296 20181213_JW_Orientia_Karp_1_3 140.93 95.267 5574800 0 0 5061200 0 0 0 0 513640 4344 1107 3783 26676;26677 17369 17369 471;472;1805 1 INSVLPLYIK Unmodified 1158.7012 0.70124579 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 61.89 62.15 2 1.1378E-24 23972 20181213_JW_Orientia_Karp_2_2 243.29 184.51 249070000 157170000 0 25656000 9423300 32706000 11349000 0 12771000 4345 1395 3784 26678;26679;26680;26681;26682;26683;26684 17370;17371;17372;17373;17374;17375;17376;17377 17374 8 INSVLPLYIK Deamidation (NQ) 1159.6853 0.68526137 1395 Karp_02151 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.802 65.986 2 4.7811E-05 28676 20181213_JW_Orientia_Karp_1_3 160.82 86.567 42559000 14699000 6220800 9311000 0 5079100 4678500 2571200 0 4346 1395 3784 26685;26686;26687;26688;26689;26690 17378;17379;17380;17381;17382;17383 17380 896 6 INTDFIDNSAGVECSDHEVNIK Unmodified 2476.1176 0.11763189 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 51.998 52.28 3 0.012865 20602 20181213_JW_Orientia_Karp_1_1 58.29 36.352 517980000 127250000 88339000 179310000 0 0 122150000 0 927880 4347 1449 3785 26691;26692;26693;26694;26695 17384 17384 1 INTDFIDNSAGVECSDHEVNIK Deamidation (NQ) 2477.1016 0.10164748 1449 Karp_02529 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 53.54 53.765 3 0.016051 21323 20181213_JW_Orientia_Karp_1_1 75.215 44.725 95649000 32812000 7115200 7952400 26170000 21599000 0 0 0 4348 1449 3785 26696;26697;26698;26699;26700;26701 17385;17386 17385 972;973 2 INTQISTIDEFNEK Unmodified 1650.8101 0.81008055 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 51.794 52.126 2 0.016177 20207 20181213_JW_Orientia_Karp_1_2 133.88 62.528 64519000 24175000 19743000 0 11317000 7036000 0 0 2247700 4349 1366 3786 26702;26703;26704;26705;26706 17387;17388 17388 0 INVDVVLISVGR Unmodified 1282.7609 0.76088593 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.57 67.731 2 4.2792E-40 26346 20181213_JW_Orientia_Karp_3_2 261.35 186.31 35092000 10615000 0 5890100 0 7274800 5625300 0 5687300 4350 1066 3787 26707;26708;26709;26710;26711 17389;17390;17391;17392;17393 17393 5 INVGQDQNK Unmodified 1014.5094 0.50942227 1347 Karp_01523 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 22.369 22.735 2 0.00030528 4710 20181213_JW_Orientia_Karp_3_1 163.15 85.228 78640000 19041000 20653000 0 10792000 9661900 5284300 7383000 5824900 4351 1347 3788 26712;26713;26714;26715;26716;26717;26718;26719 17394;17395;17396;17397;17398;17399;17400;17401 17400 8 INVNEIFYDLVR Unmodified 1493.7878 0.78782897 218 F5H823;B7ZB78;F5GZG1;B7ZAY2;Q5U0C3;A8KAH9;A0A024RB87;A2IRN0;P61224-2;P61224-4;P61224-3;P62834;P61224;A6NIZ1 RAP1B;RAP1A;Raichu404X Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 74.438 74.472 2 0.0010822 34611 20181213_JW_Orientia_Karp_1_2 155.48 100.4 58583000 0 14335000 33879000 2199800 0 3609700 1741000 2819000 4352 218 3789 26720;26721;26722;26723;26724;26725 17402;17403 17402 2 INVYYNEATGGK Unmodified 1327.6408 0.64083038 1747 Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;B4DNW1 TUBB2C;TUBB4B Tubulin beta-4B chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 40.146 40.476 2 1.4536E-11 13118 20181213_JW_Orientia_Karp_1_2 206.36 125.91 350270000 80677000 66175000 95601000 26662000 16643000 0 57543000 6964300 4353 1747 3790 26726;26727;26728;26729;26730;26731;26732;26733 17404;17405;17406;17407;17408;17409;17410 17405 7 INVYYNESSSQK Unmodified 1430.6678 0.66777341 1964 Q9BUF5;B4DP54;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 TUBB6 Tubulin beta-6 chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 1 1 36.36 36.661 2 2.2525E-09 11092 20181213_JW_Orientia_Karp_1_3 215.04 173.16 50159000 23511000 19360000 0 0 1720600 925530 4641000 0 4354 1964 3791 26734;26735;26736;26737;26738;26739;26740;26741 17411;17412;17413;17414;17415;17416;17417;17418 17414 8 IPAASAAAMNLASAR Unmodified 1413.7398 0.73983292 2006 Q9UQ35;O60382;A0AUK8 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 0 By MS/MS By matching 1 1 49.247 49.521 2 0.010694 18681 20181213_JW_Orientia_Karp_1_2 112.08 83.376 18539000 0 7694500 10844000 0 0 0 0 0 4355 2006 3792 26742;26743 17419;17420 17419 2 IPAFLNVVDIAGLVK Unmodified 1567.9338 0.93376492 1031 J3KQ32;Q9NTK5;C9JTK6;Q53SW9;B4DK14;Q9NTK5-3 OLA1;PTD004 Obg-like ATPase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 75.748 75.777 2 5.4986E-09 35192 20181213_JW_Orientia_Karp_1_3 190.35 128.19 57018000 13500000 11258000 17175000 1759300 1948100 0 5950200 5428100 4356 1031 3793 26744;26745;26746;26747;26748;26749;26750 17421;17422;17423;17424;17425 17423 5 IPAMTIAK Oxidation (M) 859.48372 0.48372479 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 29.78 30.182 2 0.029641 8005 20181213_JW_Orientia_Karp_1_2 79.469 22.958 106450000 40230000 27952000 15389000 6012800 3874700 0 8688800 4300000 4357 81 3794 26751;26752;26753;26754;26755;26756;26757 17426;17427 17426 2 IPAWSNTVSIHQLLSHTSGIVDPK Unmodified 2599.3758 0.37583591 1167 Karp_00621 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 2 1 2 61.875 62.136 3;4 0.00081398 21696 20181213_JW_Orientia_Karp_3_1 94.271 70.669 376240000 139520000 40745000 59243000 0 22347000 63741000 6577400 44068000 4358 1167 3795 26758;26759;26760;26761;26762;26763;26764;26765;26766;26767;26768 17428;17429;17430;17431;17432 17431 5 IPDEIIDMVK Oxidation (M) 1187.6108 0.6107758 2017 U3KQS7;U3KQK1;V9GZ56;Q9Y4Z0 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes no 0 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 51.927 52.19 2 0.02226 20616 20181213_JW_Orientia_Karp_1_1 79.986 44.541 15441000 8505500 0 0 0 3313700 2216700 1405500 0 4359 2017 3796 26769;26770;26771;26772 17433 17433 1548 1 IPDPEAVKPDDWDEDAPAK Unmodified 2106.9746 0.9745797 1637 P27824;P27824-2;P27824-3;D6RGY2;Q6ZP56 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 50.957 51.302 3 8.5528E-07 17590 20181213_JW_Orientia_Karp_3_1 150.92 121.24 1004300000 207050000 148300000 407090000 71325000 62221000 71238000 29806000 7284400 4360 1637 3797 26773;26774;26775;26776;26777;26778;26779;26780 17434;17435;17436;17437;17438;17439;17440;17441 17441 8 IPDQLVILDMK Unmodified 1283.7159 0.71590958 137 A0A024R6I3;Q53GF9;P49755;G3V2K7;B4DL12 TMED10 Transmembrane emp24 domain-containing protein 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 66.897 67.122 2 0.0086853 29440 20181213_JW_Orientia_Karp_1_3 98.182 41.749 16257000 9481000 2418800 4327600 0 0 0 29819 0 4361 137 3798 26781;26782;26783;26784;26785 17442;17443;17444 17444 3 IPDWFLNR Unmodified 1059.5502 0.55016488 1730 P62269;J3JS69 RPS18 40S ribosomal protein S18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 62.631 62.853 2 0.0049928 27450 20181213_JW_Orientia_Karp_1_1 122.74 61.914 113390000 61142000 0 31983000 0 5247700 7611700 0 7409000 4362 1730 3799 26786;26787;26788;26789;26790;26791 17445;17446;17447;17448;17449 17445 5 IPEINSSDMSAHVTSPSGR Oxidation (M) 1999.9269 0.926918 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 37.746 38.029 3 0.0069165 11509 20181213_JW_Orientia_Karp_3_1 91.065 75.791 138110000 31604000 0 92388000 0 0 0 14114000 0 4363 1520 3800 26792;26793;26794 17450;17451 17451 1129 2 IPEINSSDMSAHVTSPSGR Oxidation (M);Deamidation (NQ) 2000.9109 0.91093358 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 1 1 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 40.542 40.884 3 0.0091434 12838 20181213_JW_Orientia_Karp_3_1 81.01 44.818 96652000 22194000 37389000 24754000 0 0 0 9679900 2635000 4364 1520 3800 26795;26796;26797;26798;26799 17452;17453 17453 1023 1129 2 IPEINSSDMSAHVTSPSGR Unmodified 1983.932 0.93200337 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.428 44.721 3 0.0079197 15393 20181213_JW_Orientia_Karp_1_3 96.153 72.069 255140000 64532000 115800000 35164000 4426000 0 32007000 0 3214100 4365 1520 3800 26800;26801;26802;26803;26804;26805 17454;17455 17455 2 IPEISIQDMTAQVTSPSGK Oxidation (M) 2017.0038 0.003771334 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91 FLNA;FLJ00119 Filamin-A yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.555 54.737 2 2.4234E-17 21898 20181213_JW_Orientia_Karp_1_2 199.15 163.55 36146000 7287700 16403000 12456000 0 0 0 0 0 4366 1615 3801 26806;26807;26808 17456;17457;17458 17457 1240 3 IPEISIQDMTAQVTSPSGK Unmodified 2001.0089 0.0088567119 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 65.639 65.846 2 6.5005E-05 22926 20181213_JW_Orientia_Karp_3_1 139.21 106.28 151600000 45884000 42183000 38852000 982880 8748000 4826300 10123000 0 4367 1615 3801 26809;26810;26811;26812;26813;26814;26815 17459;17460;17461 17461 3 IPELAINPLGDR Unmodified 1306.7245 0.72450043 184 A0A024R9M9;Q99653;H0YLY7;H0YKE7;F5GX29;B4DSB5;H0YNG9 CHP;CHP1 Calcineurin B homologous protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 63.818 63.952 2 0.011856 25069 20181213_JW_Orientia_Karp_2_3 94.767 50.45 15497000 0 0 8261600 0 4267900 2967500 0 0 4368 184 3802 26816;26817;26818 17462;17463;17464 17464 3 IPENEVPAPVKPVTDSTSAPAPK Unmodified 2343.2322 0.23219137 330 Q6J333;H0Y523;A8CTZ0;D6PAV9;Q2LAE2;Q0PW96;F8W7U0;A7XZY7;Q14BD4;E9PD98;Q15811-13;Q15811-6;Q15811-5;Q15811-12;Q15811-11;Q15811-3;Q15811-10;Q15811-7;Q15811-2;Q15811-4;Q15811-9;Q15811-8;Q15811 ITSN1 Intersectin-1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.142 46.51 3 0.00045199 14808 20181213_JW_Orientia_Karp_3_2 110.98 76.631 27388000 0 0 6763000 3568400 7756400 4967500 1391300 2941500 4369 330 3803 26819;26820;26821;26822;26823;26824 17465;17466;17467;17468;17469 17469 5 IPEPVHLPVVPDGR Unmodified 1523.846 0.84601255 1016 I3L1X2;Q9P2A4-2;Q9P2A4;I3L3W4 ABI3 ABI gene family member 3 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 54.461 54.781 3 0.0057896 20081 20181213_JW_Orientia_Karp_2_2 89.189 49.075 23492000 0 4646500 9227000 2075600 2790100 4753000 0 0 4370 1016 3804 26825;26826;26827;26828;26829 17470;17471;17472 17471 3 IPESGGDNSVFDIFELTGAAR Unmodified 2194.0542 0.054227 186 A0A024R9Q1;P07996;A0PJG0;CON__Q28194;A8MZG1 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 2 2 1 75.289 75.284 2;3 3.9587E-06 34820 20181213_JW_Orientia_Karp_1_3 147.53 107.75 272590000 80492000 47184000 80418000 3570500 22010000 11941000 26972000 0 + 4371 186 3805 26830;26831;26832;26833;26834;26835;26836;26837;26838;26839;26840 17473;17474;17475;17476;17477 17474 5 IPESGGDNSVFDIFELTGAAR Deamidation (NQ) 2195.0382 0.038242585 186 A0A024R9Q1;P07996;A0PJG0;CON__Q28194;A8MZG1 THBS1 Thrombospondin-1 yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 76.623 76.622 2 1.8871E-17 35712 20181213_JW_Orientia_Karp_1_3 194.32 156.33 68658000 20719000 12721000 15652000 3242800 5827400 0 10496000 0 + 4372 186 3805 26841;26842;26843;26844;26845;26846 17478;17479;17480 17479 72 3 IPEVFLTK Unmodified 945.55352 0.55351892 785 CON__ENSEMBL:ENSBTAP00000018229 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 53.011 53.411 2 0.017233 19392 20181213_JW_Orientia_Karp_2_1 113.5 27.027 0 0 0 0 0 0 0 0 0 + 4373 785 3806 26847;26848 17481;17482 17481 2 IPEYLAFDDEK Unmodified 1338.6343 0.63434802 1131 Karp_00376 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 56.916 57.295 2 0.00065585 20106 20181213_JW_Orientia_Karp_3_2 134.57 87.379 456970000 64010000 99704000 146010000 30309000 33040000 36198000 16967000 30727000 4374 1131 3807 26849;26850;26851;26852;26853;26854;26855;26856;26857 17483;17484;17485;17486;17487;17488;17489;17490;17491 17491 8 IPGSPPESMGR Oxidation (M) 1142.539 0.53900784 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q5SX87;V9GYJ7;V9GYF8;Q5SX90;Q5SX86 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 29.445 29.694 2 0.027836 7679 20181213_JW_Orientia_Karp_1_3 77.533 37.466 28929000 10657000 6682600 7458800 4130400 0 0 0 0 4375 596 3808 26858;26859;26860;26861 17492 17492 367 1 IPGVEHELSPVSGVK Unmodified 1546.8355 0.83550744 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 44.271 44.591 2;3 0.0044287 13945 20181213_JW_Orientia_Karp_3_2 110.15 74.639 635960000 167270000 254740000 82001000 38107000 19226000 6641400 63891000 4096300 4376 1219 3809 26862;26863;26864;26865;26866;26867;26868;26869;26870;26871;26872;26873;26874;26875;26876;26877 17493;17494;17495;17496;17497;17498 17498 6 IPIIAIVDTNSDPDLVDYPIPGNDDAIR Unmodified 3020.5342 0.53424663 1347 Karp_01523 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 1 75.636 75.642 3;4 3.2935E-19 28371 20181213_JW_Orientia_Karp_3_1 171.32 138.61 403880000 141850000 0 121520000 24655000 33531000 25311000 54534000 2472600 4377 1347 3810 26878;26879;26880;26881;26882;26883;26884;26885;26886;26887 17499;17500;17501;17502;17503;17504;17505;17506;17507;17508;17509 17507 11 IPIIAIVDTNSDPDLVDYPIPGNDDAIR Deamidation (NQ) 3021.5183 0.51826221 1347 Karp_01523 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 76.488 76.471 3 1.4664E-19 36030 20181213_JW_Orientia_Karp_1_2 178.79 142.81 204450000 72127000 23194000 55473000 0 15767000 8368800 29515000 0 4378 1347 3810 26888;26889;26890;26891;26892;26893 17510;17511 17511 792 2 IPITSYFK Unmodified 967.53787 0.53786886 1414 Karp_02240 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 52.544 52.889 2 0.0051335 20567 20181213_JW_Orientia_Karp_1_3 120.62 67.27 568030000 159150000 102270000 76330000 86741000 52207000 89938000 1152100 241010 4379 1414 3811 26894;26895;26896;26897;26898;26899;26900;26901 17512;17513;17514;17515;17516;17517;17518 17514 7 IPIYFVGIGEQIDDIK Unmodified 1818.9768 0.97675195 1211 Karp_00873 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS 2 1 1 1 73.457 73.476 2;3 0.0013713 33951 20181213_JW_Orientia_Karp_1_1 130.24 75.536 101590000 57124000 15527000 23135000 0 0 0 5804600 0 4380 1211 3812 26902;26903;26904;26905;26906 17519;17520 17519 2 IPLSEFK Unmodified 832.46945 0.46945494 1095 Karp_00244 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 44.573 44.874 2 0.018801 15091 20181213_JW_Orientia_Karp_2_3 104.11 37.118 378840000 163060000 88853000 99600000 0 13370000 5128000 7880900 949090 4381 1095 3813 26907;26908;26909;26910;26911;26912;26913 17521;17522;17523;17524 17523 4 IPMPDFDLHLK Oxidation (M) 1340.6799 0.67985842 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 55.233 55.443 3 0.0012519 22917 20181213_JW_Orientia_Karp_1_1 120.63 71.441 108510000 25371000 8706600 31829000 0 16453000 26154000 0 0 4382 1782 3814 26914;26915;26916;26917;26918 17525;17526 17525 1402 2 IPMPDFDLHLK Unmodified 1324.6849 0.6849438 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 61.654 62.008 3 0.00054711 26324 20181213_JW_Orientia_Karp_1_3 152.04 86.414 6355100 0 0 5137900 0 0 0 0 1217200 4383 1782 3814 26919;26920;26921 17527;17528;17529 17528 3 IPPGAIVGIIGSNGAGK Deamidation (NQ) 1520.8562 0.85624288 1315 Karp_01271 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 2 1 1 2 1 3 63.747 63.975 2;3 0.00021221 28151 20181213_JW_Orientia_Karp_1_1 142.38 100.17 98659000 17004000 17784000 42374000 1736600 8191300 7743800 266380 3558400 4384 1315 3815 26922;26923;26924;26925;26926;26927;26928;26929;26930;26931;26932;26933 17530;17531;17532;17533 17530 742 4 IPPVSYYLK Unmodified 1078.6063 0.60628277 1174 Karp_00628 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 53.927 54.284 2 0.031187 19744 20181213_JW_Orientia_Karp_2_2 77.282 53.128 333740000 91886000 54642000 93736000 24240000 20248000 38120000 635650 10232000 4385 1174 3816 26934;26935;26936;26937;26938;26939;26940;26941 17534 17534 1 IPQDLNYDQIPSLSIEVR Unmodified 2099.0899 0.089884225 1331 Karp_01369 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 1 1 2 2 2 70.001 70.144 2;3 0.008709 31474 20181213_JW_Orientia_Karp_1_3 109.07 75.802 70318000 20047000 0 19063000 4543900 3486500 5690900 14240000 3246200 4386 1331 3817 26942;26943;26944;26945;26946;26947;26948;26949;26950;26951;26952;26953 17535;17536;17537;17538 17536 4 IPQVTPADSGEYVCHVSNGAGSR Deamidation (NQ) 2401.0968 0.096836871 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 46.64 46.951 3 0.002134 14977 20181213_JW_Orientia_Karp_3_2 99.414 78.213 93489000 35516000 22030000 22424000 0 1854200 0 3328300 8335800 4387 195 3818 26954;26955;26956;26957;26958;26959 17539 17539 80 1 IPSAVGYQPTLATDIGSLQER Unmodified 2215.1485 0.14846174 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 64.328 64.456 2;3 1.3452E-07 28161 20181213_JW_Orientia_Karp_1_2 152.68 91.245 81263000 37420000 25222000 9156300 0 4646000 4818500 0 0 4388 1341 3819 26960;26961;26962;26963;26964;26965;26966 17540;17541;17542;17543;17544;17545 17543 6 IPSLDLSAQTK Unmodified 1171.6449 0.64485312 1061 Karp_00005 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 50.486 50.831 2 1.2988E-18 19647 20181213_JW_Orientia_Karp_1_1 236.92 149.74 818750000 179190000 187760000 148720000 154160000 39883000 103270000 5450700 312270 4389 1061 3820 26967;26968;26969;26970;26971;26972;26973;26974;26975 17546;17547;17548;17549;17550;17551 17546 6 IPTISTQLK Unmodified 999.59645 0.59644637 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;Q5JQ13;B4DKC9;B4DTM7 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 45.744 45.96 2 0.015867 16573 20181213_JW_Orientia_Karp_1_1 86.67 24.708 42092000 21098000 0 20538000 455990 0 0 0 0 4390 19 3821 26976;26977;26978 17552 17552 1 IPVHMADTISK Oxidation (M) 1226.6329 0.63290823 1398 Karp_02184 yes yes 0 0 1 0 By MS/MS By matching By matching 1 1 1 27.283 27.566 3 0.025069 7382 20181213_JW_Orientia_Karp_1_1 78.342 38.717 30317000 22172000 0 1190900 0 0 0 6954200 0 4391 1398 3822 26979;26980;26981 17553 17553 1003 1 IPVHMADTISK Unmodified 1210.638 0.63799361 1398 Karp_02184 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 37.17 37.46 3 0.036114 11605 20181213_JW_Orientia_Karp_1_2 51.727 21.984 107100000 61834000 24111000 10807000 0 2863300 0 7485800 0 4392 1398 3822 26982;26983;26984;26985;26986 17554 17554 1 IPVNLTQLNLDFATISSHK Unmodified 2110.1423 0.14225415 1275 Karp_01107 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.045 69.189 3 2.0702E-07 31215 20181213_JW_Orientia_Karp_1_2 155.24 130.46 48568000 9476700 6143000 5621500 0 6032000 3235500 14360000 3698500 4393 1275 3823 26987;26988;26989;26990;26991;26992;26993 17555;17556;17557;17558;17559;17560 17556 6 IPYLPITNFNQNWQDGK Unmodified 2047.0163 0.016325351 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;O75369-5;O75369-4 FLNB Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 70.9 71.02 2 2.2307E-09 32370 20181213_JW_Orientia_Karp_1_2 185.66 142.15 166680000 34694000 62292000 20528000 3803100 6463100 4397200 20805000 13701000 4394 1520 3824 26994;26995;26996;26997;26998;26999;27000;27001 17561;17562;17563;17564;17565;17566;17567;17568;17569;17570 17562 10 IQAGEGETAVLNQLQEK Unmodified 1826.9374 0.93740633 1801 Q15075;A8K7J3 EEA1 Early endosome antigen 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 52.007 52.256 2 1.3E-06 20293 20181213_JW_Orientia_Karp_1_2 159.41 78.675 31086000 6256800 4692100 8851900 6663900 4621000 0 0 0 4395 1801 3825 27002;27003;27004;27005;27006 17571;17572;17573 17571 2 IQALQQQADEAEDR Unmodified 1613.7645 0.76452734 649 B4DVY2;V9HW56;P67936;B4DTB1 HEL-S-108;TPM4 Tropomyosin alpha-4 chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 36.614 36.972 2 1.1341E-17 10254 20181213_JW_Orientia_Karp_2_2 218.94 113.54 92169000 19594000 14852000 15873000 5534600 14853000 7748400 11234000 2480400 + 4396 649 3826 27007;27008;27009;27010;27011;27012;27013;27014 17574;17575;17576;17577;17578;17579;17580;17581 17578 8 IQASTMAFK Oxidation (M) 1011.5059 0.5059168 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 2 1 1 32.426 32.722 2 0.00064858 8868 20181213_JW_Orientia_Karp_3_1 146.79 79.986 573830000 116150000 119280000 105990000 73944000 66704000 39550000 52218000 0 4397 1662 3827 27015;27016;27017;27018;27019;27020;27021;27022;27023;27024;27025 17582;17583;17584;17585;17586;17587 17587 1286 6 IQASTMAFK Unmodified 995.511 0.51100218 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 39.441 39.822 2 0.0062691 12435 20181213_JW_Orientia_Karp_2_3 101.46 42.678 40633000 0 0 0 0 0 5624800 0 35008000 4398 1662 3827 27026;27027 17588;17589 17588 2 IQAYQGVVIAR Unmodified 1216.6928 0.69280637 1389 Karp_02137 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.454 46.774 2 0.0031186 16715 20181213_JW_Orientia_Karp_1_2 113.18 50.1 101630000 28020000 29677000 19692000 5586400 7123400 6500600 242140 4784100 4399 1389 3828 27028;27029;27030;27031;27032;27033;27034;27035 17590;17591 17590 2 IQCGDDLPQGALR Unmodified 1441.6984 0.69836203 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.304 44.546 2 1.438E-11 15812 20181213_JW_Orientia_Karp_1_1 205.07 144.9 131560000 41376000 40663000 39941000 0 4469600 0 0 5110200 4400 1170 3829 27036;27037;27038;27039;27040;27041 17592;17593;17594;17595;17596;17597;17598 17592 7 IQDSISDEAAAANLVK Unmodified 1643.8366 0.83662965 1129 Karp_00368 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.434 52.779 2 7.1393E-38 20704 20181213_JW_Orientia_Karp_1_2 250.81 178.57 74422000 19782000 19231000 16741000 3970800 5325800 4540400 4091400 738720 4401 1129 3830 27042;27043;27044;27045;27046;27047;27048;27049 17599;17600;17601;17602;17603;17604;17605;17606 17600 8 IQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAK 2 Oxidation (M) 3364.6894 0.68944341 1702 P52815;B4DLN1;Q15693 MRPL12 39S ribosomal protein L12, mitochondrial yes no 0 0 2 0 By matching By matching By MS/MS By matching 1 1 1 1 72.226 72.328 3 0.0010245 29143 20181213_JW_Orientia_Karp_2_2 58.382 30.958 88044000 0 28919000 21760000 0 18969000 0 0 18396000 4402 1702 3831 27050;27051;27052;27053 17607 17607 1323;1324 1 IQDWYDK Unmodified 966.4447 0.44469675 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 39.309 39.626 2 0.004536 12236 20181213_JW_Orientia_Karp_3_1 164.72 75.355 1445700000 265850000 272850000 194880000 315310000 134600000 0 262220000 0 + 4403 1653 3832 27054;27055;27056;27057;27058;27059 17608;17609;17610;17611;17612 17611 5 IQDWYDKK Unmodified 1094.5397 0.53965977 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 30.474 30.876 3 0.0026356 7242 20181213_JW_Orientia_Karp_2_2 128.6 13.143 82618000 32541000 4049500 2889100 8580000 12804000 0 17551000 4203300 + 4404 1653 3833 27060;27061;27062;27063;27064;27065;27066 17613;17614;17615 17614 3 IQEIIEQLDVTTSEYEK Unmodified 2037.0154 0.015381878 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 63.786 63.959 2;3 2.4772E-06 28044 20181213_JW_Orientia_Karp_1_1 196.97 145.25 49581000 16366000 10438000 9239800 0 9499500 3270700 0 766500 4405 81 3834 27067;27068;27069;27070;27071;27072;27073 17616;17617;17618;17619;17620 17616 5 IQELEDLLAK Unmodified 1170.6496 0.64960415 1613 P20700;E9PBF6;Q6DC98;B4DZT3 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.003 59.296 2 6.3666E-05 22783 20181213_JW_Orientia_Karp_2_3 154.84 56.878 111080000 17044000 20874000 19884000 12873000 18747000 21596000 60852 0 4406 1613 3835 27074;27075;27076;27077;27078;27079;27080 17621;17622;17623;17624;17625;17626;17627 17627 7 IQFDCQNITIISK Unmodified 1578.8076 0.80757813 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 58.535 58.865 2 0.00042764 24980 20181213_JW_Orientia_Karp_1_1 155.48 91.107 57174000 11568000 12912000 23318000 2772300 4001000 0 1512500 1089700 4407 1058 3836 27081;27082;27083;27084;27085;27086;27087 17628;17629;17630;17631 17628 4 IQFKPDDGTTPER Unmodified 1502.7365 0.73652168 638 B4E0X8;B4DWL1;E9PEB5;B4DT31;Q96AE4;Q96AE4-2;Q59FU3 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 35.094 35.529 3 0.012463 10607 20181213_JW_Orientia_Karp_1_2 88.163 49.583 73836000 0 28123000 16516000 5186200 4219600 0 16013000 3777700 4408 638 3837 27088;27089;27090;27091;27092;27093 17632;17633;17634;17635 17632 4 IQGIIAEYNK Unmodified 1147.6237 0.62372375 1882 Q6ZT07 TBC1D9 TBC1 domain family member 9 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.478 47.823 2 0.014022 17059 20181213_JW_Orientia_Karp_1_3 87.696 36.504 294380000 57562000 75658000 72487000 19313000 14896000 13765000 409630 40294000 4409 1882 3838 27094;27095;27096;27097;27098;27099;27100;27101 17636 17636 1 IQHAVQLATEPLEK Unmodified 1575.8621 0.86205654 242 A8K067;B4DI19;Q53HG6;A8MVQ3;B4DKY1;A0A024RCG3;B4DPV7;P49589-2;P49589;P49589-3;Q59HE5 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 40.629 40.812 3 0.0068251 13157 20181213_JW_Orientia_Karp_1_3 86.756 40.378 74835000 27819000 21944000 25072000 0 0 0 0 0 4410 242 3839 27102;27103;27104;27105 17637;17638;17639;17640 17639 4 IQHTPIEQVNIFK Unmodified 1565.8566 0.85657723 1135 Karp_00415 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 49.611 49.861 3 0.0027434 18465 20181213_JW_Orientia_Karp_1_3 103.11 61.708 81599000 19176000 16071000 13297000 17490000 9152600 6412500 0 0 4411 1135 3840 27106;27107;27108;27109;27110;27111 17641;17642;17643 17641 3 IQHTVTASVR Unmodified 1110.6146 0.61455605 1549 P04275 VWF von Willebrand factor;von Willebrand antigen 2 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 23.081 23.345 3 0.023129 5464 20181213_JW_Orientia_Karp_1_1 60.301 19.307 10425000 2576000 3511000 1929400 607070 586790 347890 866500 0 4412 1549 3841 27112;27113;27114;27115;27116;27117;27118 17644 17644 1 IQITLQDIASLTSIK Unmodified 1642.9505 0.9505372 1438 Karp_02403 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 73.588 73.63 2 2.1134E-19 29814 20181213_JW_Orientia_Karp_3_2 217.12 135.6 53520000 16454000 10883000 10069000 2000300 0 0 9714100 4399200 4413 1438 3842 27119;27120;27121;27122;27123;27124 17645;17646;17647 17647 3 IQLVEEELDR Unmodified 1242.6456 0.6455814 494;649;859 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-3;P06753-5;P06753-6;J3KN67;P06753-4;M1VPF4;D6R904;P06753;H0YL80;K7EP68;B4DTK3;B4DVY2;V9HW56;P67936;B4DTB1;K7ERG3;K7ENT6;B4DGC2;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951-3;P67936-2;P07951-2;P07951;H0YL52;D9YZV5;D9YZV4;P09493-9;P09493-4;P09493-3;P09493-10;P09493;H0YKX5;H0YKP3;Q8TCG4;C9IZA2;H0YNC7;Q15657;Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;A0A024R5W6;Q59GR8;Q6ZN40;P09493-2;P09493-5;P09493-8;P09493-7;P09493-6 DKFZp686J1372;TPM3;TPM3-ROS1;TPM1;TPM4;HEL-S-108;HEL-S-273;TPM2;TPM2b Tropomyosin alpha-3 chain;Tyrosine-protein kinase receptor;Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.667 51.012 2 1.6397E-07 18000 20181213_JW_Orientia_Karp_2_1 194.12 87.236 650460000 96080000 92509000 55413000 118130000 68102000 117950000 91149000 11137000 + 4414 494;649;859 3843 27125;27126;27127;27128;27129;27130;27131;27132 17648;17649;17650;17651;17652;17653;17654;17655;17656 17651 9 IQNDKMRTGNLPANMK 2 Oxidation (M);2 Deamidation (NQ) 1863.8819 0.88188206 712 B7Z4F4;B7Z4Q5;Q59EV9;B7Z2A4;P18433-4;P18433-2;P18433-3;P18433 PTPRA Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase;Receptor-type tyrosine-protein phosphatase alpha yes no 0 2 2 2 By MS/MS 1 42.812 42.963 3 0.034269 13469 20181213_JW_Orientia_Karp_2_2 52.008 9.6937 0 0 0 0 0 0 0 0 0 4415 712 3844 27133 17657 17657 1597 1 IQNIELLGPSVIR Unmodified 1450.8508 0.85076357 1430 Karp_02387 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 62.971 63.266 2 5.9514E-08 24471 20181213_JW_Orientia_Karp_2_2 193.22 142.92 204170000 46552000 43244000 62334000 4564100 24542000 12306000 150200 10483000 4416 1430 3845 27134;27135;27136;27137;27138;27139;27140;27141 17658;17659;17660;17661;17662 17660 5 IQNLDQSCQGTYICQAHGPWGK Unmodified 2560.1587 0.15872562 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 47.651 47.995 3 0.0063149 15418 20181213_JW_Orientia_Karp_3_2 71.969 50.769 44865000 11553000 8085800 10706000 0 0 3868400 1295000 9356600 4417 195 3846 27142;27143;27144;27145;27146;27147 17663;17664;17665 17665 3 IQNLEALLQK Unmodified 1168.6816 0.68157298 1801 Q15075;A8K7J3 EEA1 Early endosome antigen 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 55.536 55.904 2 0.00013797 20657 20181213_JW_Orientia_Karp_2_2 147.4 55.505 52597000 0 19683000 11482000 5295200 9666100 6363200 0 107840 4418 1801 3847 27148;27149;27150;27151;27152;27153 17666;17667;17668;17669;17670 17669 5 IQNTLHCCGVTDYR Unmodified 1735.777 0.77702306 243 A0A024RCI0;B4DRB0;B4DUZ1;B3KQJ7;Q59ED5;O43657 TSPAN6 Tetraspanin;Tetraspanin-6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.291 34.648 3 0.0061329 10146 20181213_JW_Orientia_Karp_1_2 106.58 81.256 86180000 13913000 25304000 18876000 4093200 1633300 3970500 11930000 6459200 4419 243 3848 27154;27155;27156;27157;27158;27159;27160;27161 17671;17672;17673;17674;17675;17676;17677;17678 17673 8 IQPSGGTNINEALLR Unmodified 1581.8475 0.84746911 823 CON__Q9TRI1;B4DM79;Q5T985;A2RTY6;D3DRR6;P19823 ITIH2 Inter-alpha-trypsin inhibitor heavy chain H2 yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 49.915 50.232 2 0.020823 16865 20181213_JW_Orientia_Karp_3_2 84.352 42.014 43168000 9981100 13144000 9791200 0 2254200 5351000 329580 2317200 + 4420 823 3849 27162;27163;27164;27165;27166;27167;27168 17679 17679 1 IQQEIAVQNPLVSER Unmodified 1722.9264 0.92644771 616 F5GYN4;Q659F9;J3KR44;B4DPD5;Q96FW1;F5GYJ8 OTUB1;DKFZp564E242 Ubiquitin thioesterase OTUB1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.448 54.631 2 2.7271E-13 21574 20181213_JW_Orientia_Karp_1_3 209.79 120.53 61539000 19221000 25855000 16463000 0 0 0 0 0 4421 616 3850 27169;27170;27171 17680;17681;17682 17682 3 IQQLQEILQDLQK Unmodified 1595.8883 0.88827129 609 B4DNL3;Q9P0K7-4;Q9P0K7-3;Q9P0K7;Q9P0K7-2 RAI14 Ankycorbin yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 69.096 69.248 2 0.0016967 24712 20181213_JW_Orientia_Karp_3_1 129.74 76.415 17697000 3210900 5617700 0 0 0 1368200 6091000 1409200 4422 609 3851 27172;27173;27174;27175;27176 17683 17683 1 IQQLTALGAAQATAK Unmodified 1483.8358 0.83584179 1955 Q99471;H3BMQ1;H3BPF6;Q99471-3 PFDN5 Prefoldin subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.688 47.008 2 3.434E-28 16861 20181213_JW_Orientia_Karp_1_2 239.38 154.56 120380000 31318000 25398000 25668000 7599200 7430800 12665000 2645700 7660300 4423 1955 3852 27177;27178;27179;27180;27181;27182;27183;27184 17684;17685;17686;17687;17688;17689;17690;17691 17685 8 IQQNTFTR Unmodified 1006.5196 0.51959303 1520;1615;1797 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98;O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 28.116 28.347 2 0.0034019 7160 20181213_JW_Orientia_Karp_1_2 154.12 79.602 160970000 54001000 43248000 57175000 0 3611300 2929700 0 0 4424 1615;1520;1797 3853 27185;27186;27187;27188;27189 17692;17693 17693 2 IQQVHSAESSLAK Unmodified 1396.731 0.73104237 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 25.99 26.341 3 0.0016151 6238 20181213_JW_Orientia_Karp_1_2 113.07 69.761 37466000 0 11979000 12413000 3467600 2853100 2600100 0 4154100 4425 1374 3854 27190;27191;27192;27193;27194;27195;27196 17694;17695;17696;17697;17698;17699 17695 6 IQSIPTLILFNNGEAVSR Deamidation (NQ) 1972.0629 0.062941193 1445 Karp_02423 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 1 1 1 73.553 73.602 2;3 8.5181E-32 34130 20181213_JW_Orientia_Karp_1_1 232.73 163.98 177310000 91595000 49444000 24039000 0 6439000 0 5795300 0 4426 1445 3855 27197;27198;27199;27200;27201;27202;27203 17700;17701;17702;17703 17700 966;967 3 IQSIPTLILFNNGEAVSR 2 Deamidation (NQ) 1973.047 0.046956778 1445 Karp_02423 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 74.574 74.6 3 0.00081849 34337 20181213_JW_Orientia_Karp_1_3 110.74 60.431 23191000 8292300 5019400 6191300 0 1719200 654860 0 1313700 4427 1445 3855 27204;27205;27206;27207;27208;27209 17704;17705;17706 17706 966;967 3 IQSQNDREK 2 Deamidation (NQ) 1118.5204 0.52038089 491 Q9H8E3;B4E266;B4DER1;B2RCM2;B4DJ10;Q9P2J5 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 2 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 24.606 25.041 3 0.036668 5876 20181213_JW_Orientia_Karp_1_3 55.37 10.617 9138500 0 4652600 316570 1175300 1019500 0 1452800 521690 4428 491 3856 27210;27211;27212;27213;27214;27215 17707 17707 1477;1478 0 IQTPVLILSGLSTIDNK Unmodified 1811.0404 0.040414837 1321 Karp_01283 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 73.353 73.384 2;3 2.8253E-164 33579 20181213_JW_Orientia_Karp_1_3 371.62 321.17 3274600000 816750000 521070000 483080000 268880000 239850000 168830000 516360000 259830000 4429 1321 3857 27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230 17708;17709;17710;17711;17712;17713;17714;17715 17710 8 IQTQPGYANTLR Unmodified 1360.7099 0.709913 223 F8VVM2;Q8NCF7;Q53HC3;B2RE88;A0A024RBE8;A0A024RBH9;Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 38.331 38.648 2 5.6804E-40 12611 20181213_JW_Orientia_Karp_1_1 258.01 166.74 525390000 127610000 175020000 173810000 5817900 7270300 0 35859000 0 4430 223 3858 27231;27232;27233;27234;27235;27236 17716;17717;17718;17719;17720;17721 17716 6 IQVLQQQADDAEER Unmodified 1641.7958 0.79582747 494 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-3;P06753-5;P06753-6;Q5VU61;P06753-4;Q8NAG3;B4DWT5;D6R904;D6RFM2 DKFZp686J1372;TPM3 Tropomyosin alpha-3 chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.871 41.171 2 2.2584E-35 13938 20181213_JW_Orientia_Karp_1_1 250.69 190.21 136470000 39618000 22375000 33380000 19153000 5886900 0 16057000 0 4431 494 3859 27237;27238;27239;27240;27241;27242;27243;27244 17722;17723;17724;17725;17726;17727;17728;17729 17722 8 IQVLVEPDHFK Unmodified 1323.7187 0.71868677 132 Q86TY5;Q6FGL0;A0A024R693;Q59FR8;P17931 LGALS3;hCG_22119 Galectin;Galectin-3 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 47.59 47.773 3 0.0041996 17066 20181213_JW_Orientia_Karp_1_3 100.82 42.449 30894000 8200400 16501000 6192900 0 0 0 0 0 4432 132 3860 27245;27246;27247 17730;17731 17731 2 IQVTPPGFQLVFLPFADDK Unmodified 2131.1354 0.13537785 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;P12956-2;F5H1I8;B4E356;Q6IC76 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 77.08 77.072 2 0.0010325 29129 20181213_JW_Orientia_Karp_3_1 112.34 64.347 93276000 28633000 15369000 26050000 3786200 2541500 1566200 15330000 0 4433 48 3861 27248;27249;27250;27251;27252;27253;27254 17732;17733;17734 17734 3 IQVVVLSASDASPPPVK Unmodified 1705.9614 0.96143623 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 57.885 58.174 2 3.5233E-06 24607 20181213_JW_Orientia_Karp_1_1 150.05 104.05 39776000 19411000 10208000 9310200 0 0 0 0 847320 4434 195 3862 27255;27256;27257;27258 17735;17736;17737;17738 17735 4 IQVWHAEHR Unmodified 1174.5996 0.59957468 457 E7EQR4;Q6NUR7;B2R6J2;P15311;B7Z437;B7Z5V2;V9HW42;J7M2B1 EZR;HEL-S-105;EZR-ROS1 Ezrin;Tyrosine-protein kinase receptor yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 24.705 25.085 3 0.037971 5897 20181213_JW_Orientia_Karp_1_2 68.016 28.994 21671000 2297000 5819500 0 1491400 2022600 4232400 3729100 2078600 4435 457 3863 27259;27260;27261;27262;27263;27264;27265 17739 17739 1 IQVWHEEHR Unmodified 1232.6051 0.60505399 1630 V9HWC0;P26038;Q6PJT4 HEL70;MSN Moesin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.224 25.569 3 0.010753 6463 20181213_JW_Orientia_Karp_1_1 100.02 63.699 50086000 4827000 14763000 3469600 7291400 6186400 3731900 6772800 3043400 4436 1630 3864 27266;27267;27268;27269;27270;27271;27272;27273 17740;17741;17742;17743;17744;17745 17740 6 IQYFTFNK Unmodified 1059.5389 0.53893149 1243 Karp_00910 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.217 51.519 2 0.004225 19765 20181213_JW_Orientia_Karp_1_2 134.48 71.172 153940000 42520000 40774000 25203000 22741000 10039000 12466000 0 193960 4437 1243 3865 27274;27275;27276;27277;27278;27279;27280 17746;17747;17748;17749;17750;17751 17747 6 IQYIPGWR Unmodified 1031.5553 0.55525025 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.209 54.475 2 0.012325 19906 20181213_JW_Orientia_Karp_2_1 100.07 45.517 678200000 177330000 43126000 323970000 39750000 35843000 58175000 0 0 4438 1396 3866 27281;27282;27283;27284;27285;27286 17752;17753;17754;17755 17753 4 IREDLPNLESSEETEQINK Unmodified 2243.0917 0.091734718 1827 Q53FR4;Q96QK1;Q5HYM2 VPS35;DKFZp686O2462 Vacuolar protein sorting-associated protein 35 yes no 0 0 0 1 By MS/MS By matching 1 1 46.204 46.634 3 0.0013749 16614 20181213_JW_Orientia_Karp_1_2 109.42 69.242 24438000 0 19793000 0 0 0 0 0 4644700 4439 1827 3867 27287;27288 17756 17756 1 IREGQVEVLK Unmodified 1169.6768 0.67682195 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5;Q6NZI2-2;Q6NZI2-3 PTRF Polymerase I and transcript release factor yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 32.056 32.408 3 0.0044822 9124 20181213_JW_Orientia_Karp_1_2 105.17 45.739 52523000 0 36230000 8546000 0 5389800 0 0 2357400 4440 1868 3868 27289;27290;27291;27292;27293;27294 17757;17758;17759;17760;17761;17762 17758 6 IRELESQISELQEDLESER Unmodified 2302.1288 0.12884851 47 A0A024R1N1;P35579;Q86XU5;Q99529 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 60.317 60.649 2 0.032736 25829 20181213_JW_Orientia_Karp_1_2 139.21 96.785 31491000 0 20521000 7450500 3519500 0 0 0 0 4441 47 3869 27295;27296;27297 17763 17763 1 IREYFGGFGEVESIELPMDNK Unmodified 2429.1573 0.15731186 254 H0YA96;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103-4;Q14103-3;Q14103-2;Q14103;B4E0W4;D6RAF8 HNRNPD;HNRPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 67.404 67.504 3 0.030646 30227 20181213_JW_Orientia_Karp_1_1 74.029 33.945 33769000 12924000 0 6475700 0 6411600 7957000 0 0 4442 254 3870 27298;27299;27300;27301 17764 17764 1 IRIDSLSAQLSQLQK Unmodified 1698.9628 0.96283322 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 55.802 56.012 3 0.024265 20993 20181213_JW_Orientia_Karp_2_3 82.55 52.416 30727000 11122000 2559100 6934100 0 6345800 3766100 0 0 4443 1543;1544;1851 3871 27302;27303;27304;27305;27306 17765 17765 1 IRLENEIQTYR Deamidation (NQ) 1434.7467 0.74669243 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 42.262 42.583 3 0.015566 14252 20181213_JW_Orientia_Karp_1_2 97.452 14.37 46202000 0 12629000 25528000 0 920050 324610 6800700 0 + 4444 798 3872 27307;27308;27309;27310;27311 17766 17766 278 1 IRLENEIQTYR Unmodified 1433.7627 0.76267685 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 40.225 40.517 2;3 0.00020346 12161 20181213_JW_Orientia_Karp_3_2 175.49 112.27 245700000 0 0 133620000 58781000 44272000 0 0 9030000 + 4445 798 3872 27312;27313;27314;27315;27316;27317 17767;17768;17769;17770;17771 17771 5 IRPLPELDFSER Unmodified 1470.7831 0.78307794 1196 Karp_00815 yes yes 0 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 53.714 53.984 3 0.0051062 19864 20181213_JW_Orientia_Karp_2_3 134.18 67.645 75996000 48295000 6245000 8869500 3592900 0 8993300 0 0 4446 1196 3873 27318;27319;27320;27321;27322 17772;17773;17774 17774 3 IRYESLTDPSK Unmodified 1307.6721 0.67213051 1057;251;1838 K9JA46;P07900;P07900-2;Q2VPJ6;G3V2J8;B4DTA5;Q86SX1;Q58FF6;Q5T9W8;B4DMA2;A0A024RD80;P08238;Q6PK50;Q58FF7;O14942;Q58FF8 EL52;HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 1 By MS/MS By MS/MS By matching By matching 2 1 1 1 35.609 35.909 3 0.013455 11020 20181213_JW_Orientia_Karp_1_1 96.067 24.179 104020000 1313400 95202000 4854700 0 0 0 2648700 0 4447 1057;251;1838 3874 27323;27324;27325;27326;27327 17775;17776 17775 1 ISAALVK Unmodified 700.44833 0.44832557 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 33.756 34.356 2 0.016427 9710 20181213_JW_Orientia_Karp_3_1 108.98 28.428 6577900 0 0 0 4240500 0 0 2337400 0 4448 1094 3875 27328;27329 17777;17778 17778 2 ISAENGRPLISQLALDSNK Deamidation (NQ) 2026.0695 0.069483134 1449 Karp_02529 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.287 55.554 3 1.5968E-05 22878 20181213_JW_Orientia_Karp_1_1 148.19 109.96 122960000 31953000 21526000 26414000 9452900 22822000 10788000 0 0 4449 1449 3876 27330;27331;27332;27333;27334;27335 17779;17780;17781;17782;17783;17784 17779 974 6 ISAFGYLECSAK Unmodified 1344.6384 0.63838754 33 Q5JR08;A0A024R0I3;P08134;E9PQH6 RHOC;hCG_2043376 Rho-related GTP-binding protein RhoC yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 54.412 54.622 2 0.0017146 21843 20181213_JW_Orientia_Karp_1_2 125.23 68.31 57523000 13594000 15088000 17533000 0 6488900 4819900 0 0 4450 33 3877 27336;27337;27338;27339;27340 17785;17786;17787;17788 17786 4 ISANENSLAVR Unmodified 1172.6149 0.61494998 605 F8VQE1;B4DN52;Q53GG0;Q9UHB6-2;Q9UHB6-5;Q9UHB6;Q9UHB6-4;F8VRN8;F8VS07;B3KTW2;Q9UHB6-3 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 36.726 37.063 2 0.03999 11364 20181213_JW_Orientia_Karp_1_2 91.658 55.212 6794400 0 3496100 1460400 1059900 0 778000 0 0 4451 605 3878 27341;27342;27343;27344 17789 17789 0 ISAPNVDFNLEGPK Unmodified 1499.762 0.76200815 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 58.471 58.738 2 0.0013408 22500 20181213_JW_Orientia_Karp_2_3 131.79 85.088 407890000 177630000 93223000 103810000 0 19214000 13976000 41195 0 4452 1782 3879 27345;27346;27347;27348;27349;27350;27351 17790;17791;17792 17791 3 ISASAPSIHDYYTIK Unmodified 1664.841 0.84098675 1179 Karp_00654 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 46.317 46.609 3 0.0092543 16637 20181213_JW_Orientia_Karp_1_2 80.96 28.267 78502000 26924000 29717000 0 8841500 3531600 0 0 9487900 4453 1179 3880 27352;27353;27354;27355;27356 17793;17794;17795;17796 17794 4 ISCTDCGTIYNK Unmodified 1430.617 0.61700017 1222 Karp_00889 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.289 34.662 2 1.3128E-16 10106 20181213_JW_Orientia_Karp_1_3 217.66 157.54 48119000 8781900 8725100 17959000 1778500 2371400 0 4854400 3648600 4454 1222 3881 27357;27358;27359;27360;27361;27362;27363 17797;17798;17799;17800;17801;17802 17798 6 ISCTIANR Unmodified 933.4702 0.4702 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 27.496 27.957 2 0.0008481 7437 20181213_JW_Orientia_Karp_1_1 176.41 62.999 33189000 0 6157900 18228000 1619100 0 0 3964700 3219000 4455 85 3882 27364;27365;27366;27367;27368;27369 17803;17804;17805;17806 17803 4 ISDDFAWLR Unmodified 1121.5506 0.55055881 1216 Karp_00883 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.859 63.117 2 4.566E-09 24669 20181213_JW_Orientia_Karp_2_3 215.39 77.328 215050000 66705000 13798000 38778000 2568200 68251000 15020000 0 9931400 4456 1216 3883 27370;27371;27372;27373;27374;27375;27376 17807;17808;17809;17810;17811;17812;17813;17814 17812 8 ISDLSNTHNLVESSMK Oxidation (M) 1789.8516 0.85162779 1403 Karp_02211 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 37.375 37.708 3 0.0079529 11313 20181213_JW_Orientia_Karp_3_1 95.236 62.502 351870000 168900000 59277000 45497000 12440000 22185000 0 43569000 0 4457 1403 3884 27377;27378;27379;27380;27381;27382 17815;17816;17817;17818;17819 17819 1010 5 ISDLSNTHNLVESSMK Unmodified 1773.8567 0.85671317 1403 Karp_02211 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 42.704 43.004 3 0.01483 14327 20181213_JW_Orientia_Karp_1_3 84.859 39.069 159740000 46529000 43394000 41446000 8827400 5016200 0 14523000 0 4458 1403 3884 27383;27384;27385;27386;27387;27388 17820;17821;17822;17823;17824 17822 5 ISDPDKIDDITFLK Unmodified 1618.8454 0.84540342 1135 Karp_00415 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 57.017 57.379 3 0.015673 23634 20181213_JW_Orientia_Karp_1_2 108.66 78.856 76102000 33301000 21168000 10350000 0 0 0 55000 11227000 4459 1135 3885 27389;27390;27391;27392;27393 17825;17826 17825 2 ISDSDINLDK Unmodified 1118.5455 0.54553301 1398 Karp_02184 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 40.118 40.447 2 1.7848E-08 12951 20181213_JW_Orientia_Karp_1_3 198.72 109.9 107080000 21797000 28755000 27300000 14387000 0 0 14839000 0 4460 1398 3886 27394;27395;27396;27397;27398;27399 17827;17828;17829;17830;17831;17832 17829 6 ISEECIAQWK Unmodified 1262.5965 0.59652272 1706 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 46.129 46.565 2 0.033058 16706 20181213_JW_Orientia_Karp_1_2 76.17 39.723 10427000 0 6935900 0 1604400 0 0 0 1887000 4461 1706 3887 27400;27401;27402 17833 17833 1 ISELDAFLK Unmodified 1034.5648 0.56481189 1772 Q6FHU3;Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.694 60.954 2 0.00024709 25583 20181213_JW_Orientia_Karp_1_3 168.27 54.766 96441000 46712000 7665300 12283000 0 7795400 11867000 0 10118000 4462 1772 3888 27403;27404;27405;27406;27407;27408 17834;17835;17836;17837;17838;17839;17840 17837 7 ISENGVIWPAVEVDATSQPK Deamidation (NQ) 2140.0688 0.068814432 1430 Karp_02387 yes yes 0 1 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 2 2 1 67.874 68.082 2;3 0.0096046 26673 20181213_JW_Orientia_Karp_3_2 88.983 55.622 39502000 11171000 7532400 7099400 0 0 4830000 6040900 2828500 4463 1430 3889 27409;27410;27411;27412;27413;27414;27415;27416 17841;17842 17842 950 2 ISEQFSAMFR Unmodified 1214.5754 0.57539335 1964 Q9BUF5;B4DP54;B3KS31;B4E386 TUBB6 Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 55.308 55.598 2 0.013994 22946 20181213_JW_Orientia_Karp_1_1 94.409 49.656 17564000 5029400 6244200 6200800 0 0 0 0 89740 4464 1964 3890 27417;27418;27419;27420 17843 17843 1 ISEQFSAMFR Oxidation (M) 1230.5703 0.57030797 1964 Q9BUF5;B4DP54;B3KS31;B4E386 TUBB6 Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 46.533 46.886 2 0.0063963 16810 20181213_JW_Orientia_Karp_1_2 97.597 49.728 15979000 0 6591500 5935500 0 0 0 0 3452200 4465 1964 3890 27421;27422;27423;27424 17844;17845 17845 1521 2 ISEQFTAMFR Oxidation (M) 1244.586 0.58595803 1566;1747;1550;602 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q6P602;A4UCU2;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;B4DMJ5 TUBB4A;TUBB;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.508 48.853 2 3.3106E-12 17736 20181213_JW_Orientia_Karp_1_3 214.71 161.77 319870000 63970000 116450000 34703000 37044000 15158000 11715000 100720 40727000 4466 1550;1566;1747;602 3891 27425;27426;27427;27428;27429;27430;27431;27432 17846;17847;17848;17849;17850;17851;17852 17848 375 7 ISEQFTAMFR Unmodified 1228.591 0.59104341 1566;1747;1550;602 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q6P602;A4UCU2;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;B4DMJ5 TUBB4A;TUBB;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 57.225 57.556 2 1.1782E-33 23740 20181213_JW_Orientia_Karp_1_2 256.47 146.99 139960000 71984000 23398000 30098000 0 5387600 4733500 77865 4282200 4467 1550;1566;1747;602 3891 27433;27434;27435;27436;27437;27438;27439 17853;17854;17855;17856 17854 4 ISETVVYDDATTTPAK Unmodified 1709.836 0.83596095 1345 Karp_01521 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 45.594 45.997 2 0.00021642 14499 20181213_JW_Orientia_Karp_3_2 176.99 117.57 19778000 0 0 0 3686200 0 7554700 0 8536900 4468 1345 3892 27440;27441;27442;27443;27444;27445 17857;17858;17859;17860;17861;17862 17862 6 ISEVLSNAAK Unmodified 1030.5659 0.56587452 1346 Karp_01522 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.106 35.463 2 1.2166E-24 9787 20181213_JW_Orientia_Karp_2_1 242.39 142.37 792670000 254600000 165870000 170360000 28460000 56913000 1247100 78199000 37017000 4469 1346 3893 27446;27447;27448;27449;27450;27451;27452;27453 17863;17864;17865;17866;17867;17868;17869;17870 17867 8 ISEVLSNAAK Deamidation (NQ) 1031.5499 0.5498901 1346 Karp_01522 yes yes 0 1 0 0 By MS/MS By matching By matching By matching 1 1 1 1 37.977 38.277 2 0.014989 12442 20181213_JW_Orientia_Karp_1_1 96.665 27.037 38660000 8035100 12760000 17403000 0 0 0 462660 0 4470 1346 3893 27454;27455;27456;27457 17871 17871 789 1 ISFEVDLDYK Unmodified 1227.6023 0.60231961 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 62.251 62.553 2 0.011881 23283 20181213_JW_Orientia_Karp_3_2 93.556 43.743 12812000 0 1220300 3830600 0 0 4025100 0 3736500 4471 1333 3894 27458;27459;27460;27461;27462 17872;17873;17874;17875 17874 4 ISFLENNLEQLTK Unmodified 1547.8195 0.81952302 834 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;B4DS27;Q57Z91;A1L179;J3KNA1;B7Z2M7;B2RCP3;O60282-2;O60282;Q12840;Q59GB8;B0I1S7 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5C;KIF5A Kinesin-like protein;Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 64.394 64.594 2 0.0014075 27939 20181213_JW_Orientia_Karp_1_3 132.86 59.363 21175000 7850400 4762900 8529100 0 0 0 32868 0 4472 834 3895 27463;27464;27465;27466 17876;17877;17878 17878 3 ISFPAIQAAPSFSNSFPQIFR Deamidation (NQ) 2325.1794 0.17936793 138 A0A024R6K8;P23381;P23381-2;H0YJP3 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 1 0 0 By MS/MS By matching By matching 1 1 1 75.726 75.726 3 0.01022 35438 20181213_JW_Orientia_Karp_1_1 86.179 59.819 30429000 24495000 0 0 0 0 1120800 4813400 0 4473 138 3896 27467;27468;27469 17879 17879 54 1 ISFPAIQAAPSFSNSFPQIFR Unmodified 2324.1954 0.19535235 138 A0A024R6K8;P23381;P23381-2;H0YJP3 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 74.898 74.922 2 3.3258E-05 34926 20181213_JW_Orientia_Karp_1_2 144.73 97.018 91218000 24932000 20113000 35054000 0 0 0 11119000 0 4474 138 3896 27470;27471;27472;27473 17880;17881 17880 2 ISGDTFEVMSTYPGDEVLMDVDYR 2 Oxidation (M) 2770.199 0.19897826 1164 Karp_00616 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 69.047 69.207 2;3 5.8229E-08 27856 20181213_JW_Orientia_Karp_2_3 145.88 119.35 203220000 21941000 29566000 10395000 0 33200000 23863000 52045000 32210000 4475 1164 3897 27474;27475;27476;27477;27478;27479;27480;27481;27482;27483;27484;27485 17882;17883;17884;17885;17886;17887;17888;17889;17890;17891;17892;17893 17888 696;697 12 ISGDTFEVMSTYPGDEVLMDVDYR Oxidation (M) 2754.2041 0.20406364 1164 Karp_00616 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 72.066 72.202 3 5.5739E-06 32721 20181213_JW_Orientia_Karp_1_3 128.75 103.85 89525000 0 26126000 26454000 12362000 0 0 24583000 0 4476 1164 3897 27486;27487;27488;27489 17894;17895;17896 17895 696;697 2 ISGLIYEETR Unmodified 1179.6136 0.61355299 447 B2R4R0;P62805;Q0VAS5;Q6B823 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 1 1 1 3 47.901 48.21 2 1.7915E-12 17244 20181213_JW_Orientia_Karp_1_1 227.99 152.94 19773000000 6151300000 5841300000 5442400000 431440000 333660000 249370000 60647000 1263300000 4477 447 3898 27490;27491;27492;27493;27494;27495;27496;27497;27498;27499;27500;27501;27502;27503;27504 17897;17898;17899;17900;17901;17902;17903;17904;17905;17906;17907;17908;17909 17897 13 ISGVGIDQPPYGIFVINQK Unmodified 2044.0993 0.099326699 1762 Q02413 DSG1 Desmoglein-1 yes yes 0 0 0 0 By MS/MS By matching 1 1 71.53 71.679 2 0.00089717 29181 20181213_JW_Orientia_Karp_2_1 113.77 71.342 5966200 0 0 0 1447300 0 0 4518900 0 4478 1762 3899 27505;27506 17910 17910 1 ISHILLNSQEK Unmodified 1280.7089 0.70885036 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 1 2 1 1 1 1 32.498 32.813 2;3 0.00048994 8633 20181213_JW_Orientia_Karp_2_3 141.71 89.762 3776800000 1538100000 1021400000 888900000 310910000 3290300 13661000 534780 0 4479 1375 3900 27507;27508;27509;27510;27511;27512;27513;27514;27515;27516;27517 17911;17912;17913;17914;17915;17916;17917 17916 7 ISHILLNSQEK Deamidation (NQ) 1281.6929 0.69286595 1375 Karp_02111 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 4 5 3 3 4 3 36.496 36.855 2;3 0.00081483 9693 20181213_JW_Orientia_Karp_2_2 133.42 67.7 816250000 272770000 214620000 99221000 45553000 78533000 22729000 71373000 11453000 4480 1375 3900 27518;27519;27520;27521;27522;27523;27524;27525;27526;27527;27528;27529;27530;27531;27532;27533;27534;27535;27536;27537;27538;27539;27540;27541;27542;27543;27544;27545;27546;27547;27548 17918;17919;17920;17921;17922;17923;17924;17925;17926;17927;17928;17929;17930 17927 858 12 ISIEMHGTLEDQLSHLR Unmodified 1977.9942 0.9942097 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B7Z2W3;A1L0V1;H0YJW3;H0YJ11 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 54.261 54.461 3 0.0010414 21809 20181213_JW_Orientia_Karp_1_2 106.31 69.728 126480000 24509000 79504000 12221000 0 10249000 0 0 0 4481 133 3901 27549;27550;27551;27552 17931;17932 17932 2 ISIEMHGTLEDQLSHLR Oxidation (M) 1993.9891 0.98912432 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B7Z2W3;A1L0V1;H0YJW3;H0YJ11 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 48.906 49.298 4 0.016371 16098 20181213_JW_Orientia_Karp_3_2 72.523 37.672 126110000 0 53477000 25052000 25259000 0 7969500 0 14356000 4482 133 3901 27553;27554;27555;27556;27557 17933 17933 116 1 ISIEMNGTLEDQLSHLK Oxidation (M);Deamidation (NQ) 1943.951 0.95100748 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 1 1 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 58.426 58.686 3 0.00076793 24210 20181213_JW_Orientia_Karp_1_3 115.31 66.095 119980000 38709000 23222000 39879000 0 7122200 7324400 0 3725700 4483 1509 3902 27558;27559;27560;27561;27562;27563 17934;17935;17936;17937 17935 1013 1115 4 ISIFLGVLDVHVNR Unmodified 1580.9039 0.90386178 1119 Karp_00311 yes yes 0 0 0 0 By matching By MS/MS 1 1 68.672 68.906 2 0.03568 27711 20181213_JW_Orientia_Karp_2_1 97.214 73.363 3193000 0 2090100 0 1102900 0 0 0 0 4484 1119 3903 27564;27565 17938 17938 0 ISIGGGSCAISGGYGSR Unmodified 1597.7519 0.75185416 341;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT6B;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 45.767 46.145 2 3.2592E-09 14579 20181213_JW_Orientia_Karp_3_2 177.36 133.94 58087000 14415000 10293000 0 0 0 0 8765900 24612000 + 4485 341;793;805 3904 27566;27567;27568;27569 17939;17940;17941;17942 17942 4 ISIIGAGNVGATLAHLIAVK Unmodified 1917.1411 0.14113193 1110 Karp_00292 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 72.16 72.269 3 0.030162 33148 20181213_JW_Orientia_Karp_1_1 48.372 19.827 159250000 17074000 61906000 20753000 0 13177000 0 39078000 7263200 4486 1110 3905 27570;27571;27572;27573;27574;27575 17943;17944 17943 2 ISIIQHVALNESMLLK Unmodified 1808.023 0.022990634 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 61.197 61.498 3 0.00030079 26366 20181213_JW_Orientia_Karp_1_2 130.47 100.98 18140000 8946700 3315100 3742000 808810 0 0 0 1327200 4487 1428 3906 27576;27577;27578;27579;27580 17945;17946 17946 2 ISIIQHVALNESMLLK Oxidation (M) 1824.0179 0.017905256 1428 Karp_02381 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 57.408 57.709 3 0.0029913 21662 20181213_JW_Orientia_Karp_2_2 107.13 85.215 43503000 14126000 9255800 5670200 2740100 6460500 3521500 0 1728000 4488 1428 3906 27581;27582;27583;27584;27585;27586;27587 17947;17948 17948 1030 2 ISIPDVDLDLK Unmodified 1226.6758 0.6758189 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 66.977 67.154 2 0.017262 26027 20181213_JW_Orientia_Karp_3_2 86.882 20.19 101870000 22778000 16529000 29419000 0 18413000 7977800 0 6752800 4489 1782 3907 27588;27589;27590;27591;27592;27593 17949 17949 1 ISIPDVGLHLK Unmodified 1190.7023 0.70230842 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 56.257 56.524 3 0.010467 22761 20181213_JW_Orientia_Karp_1_3 97.597 56.433 50901000 0 4321000 27051000 0 0 19529000 0 0 4490 1782 3908 27594;27595;27596;27597 17950;17951;17952 17951 3 ISISTSGGSFR Unmodified 1110.5669 0.56693715 799 CON__P13647;P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.431 42.724 2 0.00033097 13660 20181213_JW_Orientia_Karp_3_1 148.56 85.481 205090000 45967000 29550000 25052000 7618400 7687900 16802000 72414000 0 + 4491 799 3909 27598;27599;27600;27601;27602;27603;27604 17953;17954;17955;17956;17957;17958;17959 17959 7 ISIVEILGFR Unmodified 1145.6808 0.6808447 1422 Karp_02306 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 74.579 74.606 2 2.0892E-06 34679 20181213_JW_Orientia_Karp_1_1 179.37 120.94 38202000 17335000 10284000 5461500 0 1555600 1098100 0 2468300 4492 1422 3910 27605;27606;27607;27608;27609;27610 17960;17961;17962;17963 17960 4 ISLPLPNFSSLNLR Unmodified 1569.8879 0.88787736 1571 V9HWE1;P08670;B0YJC4;Q53HU8 HEL113;VIM Vimentin yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 73.524 73.556 2 2.3211E-08 29807 20181213_JW_Orientia_Karp_3_2 193.49 154.69 9082100000 2987300000 1998500000 1474500000 55973000 277760000 221670000 1316400000 750020000 4493 1571 3911 27611;27612;27613;27614;27615;27616;27617;27618;27619 17964;17965;17966;17967;17968;17969;17970 17969 7 ISLPLPNFSSLNLR Deamidation (NQ) 1570.8719 0.87189295 1571 V9HWE1;P08670;B0YJC4;Q53HU8 HEL113;VIM Vimentin yes no 0 1 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 74.587 74.619 2 0.032236 34161 20181213_JW_Orientia_Karp_1_3 71.888 35.463 253660000 81425000 61373000 45972000 5086600 6410400 6175100 33880000 13341000 4494 1571 3911 27620;27621;27622;27623;27624;27625;27626;27627 17971 17971 1051 0 ISMGITKPTGQFSIENSR Unmodified 1964.999 0.99896073 1410 Karp_02227 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.704 49.03 3 0.0016323 17911 20181213_JW_Orientia_Karp_1_3 111.58 84.451 251750000 43672000 89914000 48926000 36059000 0 16326000 0 16856000 4495 1410 3912 27628;27629;27630;27631;27632;27633;27634 17972;17973;17974;17975;17976;17977;17978 17974 7 ISMGITKPTGQFSIENSR Deamidation (NQ) 1965.983 0.98297631 1410 Karp_02227 yes yes 0 1 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 51.361 51.611 3 0.018991 19841 20181213_JW_Orientia_Karp_1_2 89.877 60.537 116100000 38849000 30449000 30158000 8969000 2820200 4851400 0 0 4496 1410 3912 27635;27636;27637;27638;27639;27640 17979;17980 17980 923 2 ISMGITKPTGQFSIENSR Oxidation (M) 1980.9939 0.99387535 1410 Karp_02227 yes yes 0 0 1 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 42.252 42.569 3 0.016944 14071 20181213_JW_Orientia_Karp_1_3 92.427 66.837 302690000 61299000 84925000 95000000 10946000 0 9472400 41053000 0 4497 1410 3912 27641;27642;27643;27644;27645;27646 17981 17981 1018 1 ISMPDFDLHLK Unmodified 1314.6642 0.66420836 1782 Q09666;Q6ZQN2;Q8N274;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 60.335 60.601 3 5.3231E-05 25751 20181213_JW_Orientia_Karp_1_2 158.47 81.183 84530000 0 7729400 61687000 0 0 15114000 0 0 4498 1782 3913 27647;27648;27649;27650;27651 17982;17983;17984;17985;17986 17983 5 ISMPDFDLHLK Oxidation (M) 1330.6591 0.65912298 1782 Q09666;Q6ZQN2;Q8N274;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.915 51.24 3 0.0062556 18374 20181213_JW_Orientia_Karp_2_3 99.343 55.924 132360000 27757000 3823700 0 54778000 9238200 30132000 6631300 0 4499 1782 3913 27652;27653;27654;27655;27656;27657 17987;17988;17989 17988 1403 3 ISMPDFDLNLK Oxidation (M) 1307.6431 0.64313856 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By MS/MS 1 57.951 58.301 2 0.027634 24261 20181213_JW_Orientia_Karp_1_2 92.538 9.708 0 0 0 0 0 0 0 0 0 4500 1782 3914 27658 17990 17990 1404 1 ISMPDIDFNLK Unmodified 1291.6482 0.64822394 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 67.531 67.708 2 0.0020322 30022 20181213_JW_Orientia_Karp_1_2 117.71 40.172 43495000 17014000 5145600 8229200 0 5141300 2933300 0 5032300 4501 1782 3915 27659;27660;27661;27662;27663;27664 17991;17992;17993 17992 3 ISMPDIDLNLTGPK Oxidation (M) 1528.7807 0.78069468 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 2 1 2 2 2 58.803 59.15 2 0.00080947 24876 20181213_JW_Orientia_Karp_1_2 136.27 79.101 102270000 19241000 37962000 8832400 12180000 7911100 11275000 2881400 1989000 4502 1782 3916 27665;27666;27667;27668;27669;27670;27671;27672;27673;27674;27675;27676;27677 17994;17995;17996;17997;17998;17999 17995 1405 6 ISMPDIDLNLTGPK Unmodified 1512.7858 0.78578005 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 68.257 68.486 2 1.3157E-11 30302 20181213_JW_Orientia_Karp_1_3 198.97 118.06 88156000 25279000 13734000 15080000 2883900 6888400 0 19301000 4990100 4503 1782 3916 27678;27679;27680;27681;27682;27683;27684 18000;18001;18002 18002 3 ISMPDLDLHLK Unmodified 1280.6799 0.67985842 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 58.794 58.994 3 0.0051944 24701 20181213_JW_Orientia_Karp_1_2 106.16 69.84 62730000 30060000 11178000 14553000 0 0 6939200 0 0 4504 1782 3917 27685;27686;27687;27688 18003;18004;18005;18006 18004 4 ISMPDLDLHLK Oxidation (M) 1296.6748 0.67477304 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 49.013 49.338 3 0.00047795 17163 20181213_JW_Orientia_Karp_2_1 136.49 85.697 16635000 0 3678300 0 9063100 1481500 2412200 0 0 4505 1782 3917 27689;27690;27691;27692;27693 18007;18008;18009;18010 18008 1406 4 ISMPDLDLNLK Unmodified 1257.6639 0.663874 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.588 65.795 2 1.9847E-09 29240 20181213_JW_Orientia_Karp_1_1 204.34 0 407660000 141120000 77392000 62939000 3274700 50348000 33567000 39018000 0 4506 1782 3918 27694;27695;27696;27697;27698;27699;27700 18011;18012;18013;18014;18015;18016;18017 18011 7 ISMPDVDFNLK Unmodified 1277.6326 0.63257388 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 64.094 64.366 2 0.0016662 28021 20181213_JW_Orientia_Karp_1_2 119.68 68.235 31681000 0 13860000 7759400 0 5275500 0 2661700 2124600 4507 1782 3919 27701;27702;27703;27704;27705;27706 18018;18019;18020 18019 3 ISMPDVDLHLK Oxidation (M) 1282.6591 0.65912298 1782 Q09666;B4DTV0;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 45.276 45.525 3 0.00033157 16296 20181213_JW_Orientia_Karp_1_1 144.55 81.917 522750000 211160000 178560000 115470000 381430 0 17181000 0 0 4508 1782 3920 27707;27708;27709;27710;27711;27712;27713 18021;18022;18023;18024;18025 18021 1407 5 ISMPDVDLHLK Unmodified 1266.6642 0.66420836 1782 Q09666;B4DTV0;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 54.719 55.012 2;3 0.00025391 20200 20181213_JW_Orientia_Karp_2_2 133.91 87.754 394410000 96257000 64220000 81267000 25690000 24346000 101620000 0 1009000 4509 1782 3920 27714;27715;27716;27717;27718;27719;27720;27721;27722;27723;27724;27725;27726 18026;18027;18028;18029;18030;18031 18029 6 ISMPDVDLHMK 2 Oxidation (M) 1316.6105 0.61045823 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 2 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 35.347 35.631 3 0.0061903 10251 20181213_JW_Orientia_Karp_3_1 92.866 61.388 19160000 7266500 2412800 3967200 0 2196000 478770 2838400 0 4510 1782 3921 27727;27728;27729;27730;27731;27732 18032;18033 18033 1408;1409 2 ISMPDVDLHVK Unmodified 1252.6486 0.64855829 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 1 50.937 51.167 3 0.0026272 18314 20181213_JW_Orientia_Karp_2_3 100.82 49.291 20074000 3527400 0 1710400 9211700 1647600 3977100 0 0 4511 1782 3922 27733;27734;27735;27736;27737;27738 18034;18035;18036 18036 3 ISMPDVDLHVK Oxidation (M) 1268.6435 0.64347291 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 41.026 41.338 3 0.01015 12847 20181213_JW_Orientia_Karp_2_1 90.913 48.17 9031500 4995200 0 0 685590 137200 0 3213500 0 4512 1782 3922 27739;27740;27741;27742 18037;18038 18037 1410 2 ISMPDVDLNLK Unmodified 1243.6482 0.64822394 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 61.898 62.179 2 0.025671 27052 20181213_JW_Orientia_Karp_1_1 82.029 0 36030000 13124000 0 6940900 1905600 12988000 0 0 1071400 4513 1782 3923 27743;27744;27745;27746;27747 18039;18040 18039 2 ISMPDVGLNLK Unmodified 1185.6427 0.64274463 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 60.995 61.255 2 0.0020322 26506 20181213_JW_Orientia_Karp_1_1 117.71 61.272 93319000 37101000 14573000 24078000 0 7218500 6917000 0 3430300 4514 1782 3924 27748;27749;27750;27751;27752;27753 18041;18042 18041 2 ISMPDVGLNLK Oxidation (M) 1201.6377 0.63765925 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.403 50.711 2 0.0032621 17864 20181213_JW_Orientia_Karp_2_1 109.83 58.637 70944000 16135000 14213000 11931000 13178000 4149900 10472000 864450 0 4515 1782 3924 27754;27755;27756;27757;27758;27759;27760 18043;18044;18045;18046 18044 1411 4 ISMPDVNLNLK Oxidation (M) 1258.6591 0.65912298 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 49.719 50.02 2 0.0016906 16684 20181213_JW_Orientia_Karp_3_2 117.71 57.587 71655000 9569000 10116000 13551000 15923000 6687800 9216900 0 6591100 4516 1782 3925 27761;27762;27763;27764;27765;27766;27767 18047;18048;18049 18049 1412 3 ISMPDVNLNLK Unmodified 1242.6642 0.66420836 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.199 60.492 2 0.003198 25349 20181213_JW_Orientia_Karp_1_3 113.44 75.152 68334000 20797000 16759000 13106000 4105300 6382700 7131200 53728 0 4517 1782 3925 27768;27769;27770;27771;27772;27773;27774;27775 18050;18051;18052;18053;18054;18055 18052 6 ISMPEIDLNLK Unmodified 1271.6795 0.67952407 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.795 65.995 2 2.4929E-05 22990 20181213_JW_Orientia_Karp_3_1 166.66 88.56 47923000 18088000 0 10563000 645420 6874500 3971300 7781400 0 4518 1782 3926 27776;27777;27778;27779;27780;27781;27782 18056;18057;18058;18059;18060;18061;18062 18062 7 ISMPEIDLNLK Oxidation (M) 1287.6744 0.67443869 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 55.852 56.129 2 0.024772 21043 20181213_JW_Orientia_Karp_2_3 79.659 45.784 61284000 17549000 13845000 13464000 0 5972800 9766300 0 688480 4519 1782 3926 27783;27784;27785;27786;27787;27788 18063;18064;18065 18065 1413 3 ISMPEVDLNLK Unmodified 1257.6639 0.663874 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 62.081 62.302 2 0.0012503 27113 20181213_JW_Orientia_Karp_1_1 125.74 6.513 75653000 61808000 0 0 0 0 9903300 0 3941900 4520 1782 3927 27789;27790;27791;27792 18066;18067;18068;18069 18066 4 ISMPEVDLNLK Oxidation (M) 1273.6588 0.65878863 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 53.003 53.519 2 0.00018813 20580 20181213_JW_Orientia_Karp_2_1 154.01 6.2792 64076000 0 29937000 0 33328000 0 0 810580 0 4521 1782 3927 27793;27794;27795;27796 18070;18071;18072 18071 1414 3 ISMPGFK Unmodified 778.40475 0.40474619 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 47.249 47.449 2 0.040141 17072 20181213_JW_Orientia_Karp_1_2 83.287 25.835 51143000 41782000 8144300 0 0 0 1216400 0 0 4522 1782 3928 27797;27798;27799 18073 18073 1 ISMQDVDLSLGSPK Oxidation (M) 1504.7443 0.74430917 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.564 50.922 2 6.3091E-12 18028 20181213_JW_Orientia_Karp_2_2 203.88 122.87 90081000 0 24594000 18072000 12682000 11050000 12783000 10900000 0 4523 1782 3929 27800;27801;27802;27803;27804;27805;27806;27807 18074;18075;18076;18077;18078;18079;18080;18081;18082 18078 1415 9 ISMSEVDLNVAAPK Oxidation (M) 1488.7494 0.74939455 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 48.673 48.975 2 0.0022994 17156 20181213_JW_Orientia_Karp_2_3 118.9 74.041 156170000 22415000 34010000 48216000 14515000 9669600 13010000 0 14338000 4524 1782 3930 27808;27809;27810;27811;27812;27813;27814 18083;18084;18085 18085 1416 2 ISNLAQR Unmodified 800.45045 0.45045083 1393 Karp_02145 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.221 24.554 2 0.0078717 5572 20181213_JW_Orientia_Karp_1_3 153.73 29.383 174420000 7976600 110190000 12406000 7229000 13476000 5624600 11501000 6019400 4525 1393 3931 27815;27816;27817;27818;27819;27820;27821;27822 18086;18087;18088;18089;18090;18091;18092;18093 18088 8 ISNSATYSGSVAPANSALGQTQPSDQDTLVQR Unmodified 3262.5702 0.57019121 257;732 A0A024RDE8;Q96HC4;F5H7Y0;Q96HC4-7;Q96HC4-4;Q96HC4-6;H0Y8Y3;B7Z8X5;Q59FC9 PDLIM5 PDZ and LIM domain protein 5 no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 52.984 53.301 3 1.0542E-07 21000 20181213_JW_Orientia_Karp_1_2 108.31 79.674 64431000 15618000 23768000 12384000 3804900 2901100 0 5954700 0 4526 257;732 3932 27823;27824;27825;27826;27827;27828 18094;18095;18096;18097;18098 18094 5 ISNSATYSGSVAPANSALGQTQPSDQDTLVQR Deamidation (NQ) 3263.5542 0.5542068 257;732 A0A024RDE8;Q96HC4;F5H7Y0;Q96HC4-7;Q96HC4-4;Q96HC4-6;H0Y8Y3;B7Z8X5;Q59FC9 PDLIM5 PDZ and LIM domain protein 5 no no 0 1 0 0 By matching By MS/MS 1 1 56.512 56.612 3 3.003E-07 22846 20181213_JW_Orientia_Karp_1_3 109.05 79.877 18626000 12147000 0 6479900 0 0 0 0 0 4527 257;732 3932 27829;27830 18099 18099 97 1 ISNSNFDNANLNNTDLHLSNIK Deamidation (NQ) 2458.1724 0.17244466 1359 Karp_01808 yes yes 0 1 0 0 By matching By MS/MS By matching By matching 1 1 1 1 54.343 54.519 3 0.039659 21537 20181213_JW_Orientia_Karp_1_3 58.082 36.953 22877000 9025200 0 6823200 0 3442300 3586600 0 0 4528 1359 3933 27831;27832;27833;27834 18100 18100 1 ISNSNFDNANLNNTDLHLSNIK Unmodified 2457.1884 0.18842907 1359 Karp_01808 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 51.104 51.489 3 0.0030259 18276 20181213_JW_Orientia_Karp_2_1 85.054 64.048 62665000 15012000 24568000 0 5362900 9564600 0 5755400 2402600 4529 1359 3933 27835;27836;27837;27838;27839;27840 18101;18102 18101 2 ISNVNVPTSK Unmodified 1057.5768 0.57677356 1221 Karp_00888 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 32.964 33.254 2 0.00017414 9962 20181213_JW_Orientia_Karp_1_1 146.11 86.862 407360000 152970000 119050000 95545000 0 0 12181000 27610000 0 4530 1221 3934 27841;27842;27843;27844;27845 18103;18104;18105 18103 3 ISPGNPVHFSTR Unmodified 1310.6731 0.67313356 1200 Karp_00819 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 37.07 37.36 3 0.032066 11990 20181213_JW_Orientia_Karp_1_1 61.11 13.822 324960000 165450000 66012000 57055000 0 16664000 0 19773000 0 4531 1200 3935 27846;27847;27848;27849;27850 18106;18107 18106 2 ISPIIHGGGQER Unmodified 1262.6731 0.67313356 1276 Karp_01108 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 28.91 29.19 2 0.01038 7553 20181213_JW_Orientia_Karp_1_2 97.163 58.015 21479000 10522000 6040800 0 2037200 1499400 1379200 0 0 4532 1276 3936 27851;27852;27853;27854;27855 18108 18108 1 ISQDSIDKLELLISGYR Unmodified 1949.047 0.046956778 1150 Karp_00511 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.014 70.158 3 1.2258E-08 31436 20181213_JW_Orientia_Karp_1_3 170.35 89.164 155710000 28035000 21768000 36795000 0 22399000 7354600 31558000 7805500 4533 1150 3937 27856;27857;27858;27859;27860;27861;27862 18109;18110;18111;18112;18113;18114;18115;18116;18117 18112 9 ISQDSIDKLELLISGYRNNIK Deamidation (NQ) 2419.2959 0.29585425 1150 Karp_00511 yes yes 0 1 0 2 By MS/MS By matching By matching By matching 1 1 1 1 65.721 65.884 4 0.013882 28919 20181213_JW_Orientia_Karp_1_2 69.148 39.054 16261000 0 4654900 2139000 0 7055600 2411300 0 0 4534 1150 3938 27863;27864;27865;27866 18118 18118 543;544 1 ISQEYDFWLR Unmodified 1355.651 0.65100113 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 62.9 63.187 2 1.9328E-08 27622 20181213_JW_Orientia_Karp_1_1 191.4 107.4 279450000 99588000 0 76596000 9562800 46351000 32973000 102050 14276000 4535 1449 3939 27867;27868;27869;27870;27871;27872;27873 18119;18120;18121;18122;18123;18124;18125 18119 7 ISQTQQQVDR Unmodified 1201.6051 0.60511357 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.504 21.849 2 3.8144E-13 4450 20181213_JW_Orientia_Karp_1_2 224.75 126.17 37707000 4223300 6129100 13228000 3955200 3697200 2053500 2637100 1783300 4536 1266 3940 27874;27875;27876;27877;27878;27879;27880;27881 18126;18127;18128;18129;18130;18131;18132;18133 18127 8 ISRDELLQVLR Unmodified 1340.7776 0.77759863 184 A0A024R9M9;Q99653 CHP;CHP1 Calcineurin B homologous protein 1 yes no 0 0 0 1 By MS/MS 1 54.008 54.008 3 0.038875 21852 20181213_JW_Orientia_Karp_1_1 80.014 39.86 0 0 0 0 0 0 0 0 0 4537 184 3941 27882 18134 18134 1 ISSFIEEAEK Unmodified 1151.571 0.57101948 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 1 1 45.423 45.724 2 1.462E-09 15994 20181213_JW_Orientia_Karp_1_2 209.6 103.42 1522700000 533680000 475570000 384790000 61733000 17256000 32913000 9600000 7198100 4538 1166 3942 27883;27884;27885;27886;27887;27888;27889;27890;27891;27892 18135;18136;18137;18138;18139;18140;18141;18142;18143 18136 9 ISSFITQDK Unmodified 1037.5393 0.53932542 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.741 41.061 2 0.00013297 13460 20181213_JW_Orientia_Karp_1_2 187.22 58.609 958250000 188850000 220630000 205170000 82875000 52930000 38147000 143910000 25734000 4539 1126 3943 27893;27894;27895;27896;27897;27898;27899;27900 18144;18145;18146;18147;18148;18149;18150;18151;18152;18153;18154 18145 11 ISSIQSIVPALEIANAHR Unmodified 1918.0636 0.063609895 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;B7Z532;Q53QD5 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.64 62.899 3 0.0019286 27214 20181213_JW_Orientia_Karp_1_2 99.392 67.091 100590000 30830000 20537000 25950000 720400 10004000 9122100 0 3424100 4540 81 3944 27901;27902;27903;27904;27905;27906;27907 18155;18156;18157;18158;18159;18160;18161 18156 7 ISSISQPGNDFSTK Unmodified 1479.7205 0.72053726 455 E7EVQ3;B2R6E3;O15123-3;O15123;O15123-2;Q9HBP3 ANGPT2 Angiopoietin-2 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 41.204 41.654 2 0.034178 13030 20181213_JW_Orientia_Karp_2_1 75.088 3.4741 13932000 0 0 0 4140700 0 2721600 7069800 0 4541 455 3945 27908;27909;27910 18162 18162 1 ISSLLEEQFQQGK Unmodified 1505.7726 0.77257283 1726 Q5JR95;Q5JR94;P62241;Q9BS10 RPS8 40S ribosomal protein S8 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.035 52.342 2 2.8674E-124 18182 20181213_JW_Orientia_Karp_3_1 343.68 264.19 317910000 71241000 76566000 90520000 21198000 22879000 16079000 19423000 0 4542 1726 3946 27911;27912;27913;27914;27915;27916;27917 18163;18164;18165;18166;18167;18168;18169 18169 7 ISSLSSSITAK Unmodified 1092.6027 0.60265396 1449 Karp_02529 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 37.814 38.164 2 0.017262 12031 20181213_JW_Orientia_Karp_1_2 86.882 39.224 87754000 25621000 22929000 28682000 151310 0 0 10371000 0 4543 1449 3947 27918;27919;27920;27921;27922 18170;18171 18170 2 ISSPTETER Unmodified 1018.4931 0.49310351 450 B2R5H0;V9HWH9;P31949 HEL-S-43;S100A11 Protein S100;Protein S100-A11;Protein S100-A11, N-terminally processed yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 24.875 25.243 2 0.0021502 4894 20181213_JW_Orientia_Karp_2_2 117.81 60.348 75695000 0 11081000 9783100 21936000 14535000 8428000 0 9930900 4544 450 3948 27923;27924;27925;27926;27927;27928 18172;18173;18174 18173 3 ISSVLAGGSCR Unmodified 1105.555 0.55499226 790;795 CON__P02533;P02533;K7ENV3;CON__P08779;P08779 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 34.865 35.195 2 0.0051217 9385 20181213_JW_Orientia_Karp_3_2 104.82 60.429 102180000 12134000 10457000 13508000 0 6653000 4532500 37439000 17460000 + 4545 790;795 3949 27929;27930;27931;27932;27933;27934;27935 18175;18176 18176 2 ISTAIDDMEAYTK Oxidation (M) 1472.6705 0.67047553 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3-2 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 2 1 41.453 41.787 2 0.0031229 14305 20181213_JW_Orientia_Karp_1_1 115.29 81.08 26978000 9978700 10838000 0 0 0 0 6161400 0 4546 2015 3950 27936;27937;27938;27939 18177;18178 18177 1539 2 ISVGSDSDLVIWDPDAVK Unmodified 1914.9575 0.95747307 1795 Q6DEN2;Q14195-2;Q8IXW6;Q14195;B4DLZ4;H0YBT4 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 By MS/MS 1 70.771 70.98 2 0.016963 28458 20181213_JW_Orientia_Karp_3_2 107.37 73.963 1717200 0 0 0 0 0 0 0 1717200 4547 1795 3951 27940 18179 18179 1 ISVIASSICNQLSEEK Unmodified 1776.8928 0.89276432 1404 Karp_02212 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 55.152 55.509 2 1.296E-95 20615 20181213_JW_Orientia_Karp_2_1 315.41 233.46 231100000 59726000 55106000 49598000 24503000 24176000 16562000 62865 1362700 4548 1404 3952 27941;27942;27943;27944;27945;27946;27947;27948 18180;18181;18182;18183;18184;18185;18186;18187 18184 8 ISVIASSICNQLSEEK Deamidation (NQ) 1777.8768 0.87677991 1404 Karp_02212 yes yes 0 1 0 0 By MS/MS 1 54.947 55.297 2 0.010997 22274 20181213_JW_Orientia_Karp_1_2 101.43 64.984 6894500 0 6894500 0 0 0 0 0 0 4549 1404 3952 27949 18188 18188 920;1873 1 ISVVNGNNK 2 Deamidation (NQ) 945.47673 0.47672516 1375 Karp_02111 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 2 2 2 1 32.837 33.158 2 0.0075928 9781 20181213_JW_Orientia_Karp_1_3 110.41 53.861 175650000 59278000 38101000 47155000 12369000 6753400 0 8154100 3837900 4550 1375 3953 27950;27951;27952;27953;27954;27955;27956;27957;27958;27959;27960;27961;27962;27963;27964;27965;27966 18189;18190;18191;18192;18193;18194;18195;18196;18197 18192 859;860;861 8 ISVVNGNNK Deamidation (NQ) 944.49271 0.49270958 1375 Karp_02111 yes yes 0 1 0 0 By MS/MS By matching 1 1 28.439 28.713 2 0.0081948 7321 20181213_JW_Orientia_Karp_1_2 106.68 53.517 10417000 0 4800500 5616900 0 0 0 0 0 4551 1375 3953 27967;27968 18198 18198 859;860;861 1 ISVYDYDTFTR Unmodified 1378.6405 0.64049603 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14;B3KSL7 MYOF Myoferlin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 57.131 57.503 2 0.0071277 23695 20181213_JW_Orientia_Karp_1_2 100.82 56.442 33865000 10857000 17445000 0 0 0 3084600 136050 2341900 4552 1991 3954 27969;27970;27971;27972;27973 18199 18199 1 ISVYYNEATGGK Unmodified 1300.6299 0.62993134 1566;602 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;B4DMU8;B4DMJ5 TUBB Tubulin beta chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 40.495 40.829 2 1.0608E-22 12359 20181213_JW_Orientia_Karp_3_2 227.36 178.76 1327400000 316960000 384790000 294870000 90169000 35168000 40632000 138370000 26487000 4553 1566;602 3955 27974;27975;27976;27977;27978;27979;27980;27981;27982 18200;18201;18202;18203;18204;18205;18206;18207;18208;18209;18210 18210 11 ISWEEYK Unmodified 953.44945 0.44944778 1805 V9HW95;Q15293;Q15293-2 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 43.671 44.056 2 0.022372 14981 20181213_JW_Orientia_Karp_1_3 99.375 49.35 101770000 0 15787000 9945800 63295000 6866800 0 5817400 61723 4554 1805 3956 27983;27984;27985;27986;27987;27988 18211;18212 18211 2 ISYDAQFEVIK Unmodified 1311.6711 0.67106787 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 55.349 55.664 2 4.8489E-07 22501 20181213_JW_Orientia_Karp_1_2 183.03 102.86 67720000 22686000 13983000 17196000 4588300 4150000 4770700 0 347430 4555 274 3957 27989;27990;27991;27992;27993;27994;27995 18213;18214;18215;18216;18217;18218 18214 6 ITANHFSELIQLISSK Deamidation (NQ) 1800.9622 0.96216452 1317 Karp_01279 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 1 70.949 71.049 3 0.00042965 25879 20181213_JW_Orientia_Karp_3_1 138.91 96.861 39690000 2599400 6604900 0 0 8998000 3718600 17769000 0 4556 1317 3958 27996;27997;27998;27999;28000;28001;28002;28003 18219;18220;18221;18222 18222 749 4 ITANHFSELIQLISSK Unmodified 1799.9781 0.97814893 1317 Karp_01279 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.899 66.092 3 0.00075684 26163 20181213_JW_Orientia_Karp_2_3 175.27 137.72 194520000 7095200 0 68855000 0 45689000 9935200 36392000 26552000 4557 1317 3958 28004;28005;28006;28007;28008;28009 18223;18224;18225;18226 18224 4 ITAYNDLVNQQNEK Unmodified 1648.8057 0.80566387 1315 Karp_01271 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.802 43.162 2 3.072E-145 14544 20181213_JW_Orientia_Karp_1_2 411.53 301 389800000 121190000 137340000 53109000 20517000 0 0 47529000 10119000 4558 1315 3959 28010;28011;28012;28013;28014;28015;28016;28017 18227;18228;18229;18230;18231;18232;18233;18234;18235;18236 18229 10 ITAYNDLVNQQNEK Deamidation (NQ) 1649.7897 0.78967946 1315 Karp_01271 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 1 3 45.195 45.479 2 1.7806E-45 15918 20181213_JW_Orientia_Karp_1_3 258.65 167.02 132850000 37109000 30669000 38268000 3056700 6710600 3312000 5611000 8111900 4559 1315 3959 28018;28019;28020;28021;28022;28023;28024;28025;28026;28027;28028;28029;28030;28031;28032;28033;28034;28035 18237;18238;18239;18240;18241;18242;18243;18244;18245;18246;18247;18248 18242 743;744;745;1837 12 ITAYNDLVNQQNEK 2 Deamidation (NQ) 1650.7737 0.77369504 1315 Karp_01271 yes yes 0 2 0 0 By MS/MS 1 45.72 46.07 2 0.021042 16299 20181213_JW_Orientia_Karp_1_2 84.892 39.814 0 0 0 0 0 0 0 0 0 4560 1315 3959 28036 18249 18249 743;744;745;1837 1 ITDAFIQVSK Unmodified 1120.6128 0.61282471 1330 Karp_01368 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.219 49.52 2 7.7765E-34 18404 20181213_JW_Orientia_Karp_1_2 261.6 121.49 281620000 46592000 71211000 57051000 41896000 21699000 25754000 0 17418000 4561 1330 3960 28037;28038;28039;28040;28041;28042;28043 18250;18251;18252;18253;18254;18255;18256 18251 7 ITEGILVDR Unmodified 1014.571 0.5709599 1428 Karp_02381 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 45.833 46.165 2 0.00024541 14602 20181213_JW_Orientia_Karp_3_2 172.23 87.665 178600000 0 89743000 66193000 13183000 7569600 0 0 1915000 4562 1428 3961 28044;28045;28046;28047;28048 18257 18257 1 ITELETSLLHHEK Unmodified 1548.8148 0.814772 1364 Karp_01859 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 39.077 39.394 3 0.0012017 12103 20181213_JW_Orientia_Karp_3_1 117.03 31.357 279290000 81461000 62235000 54736000 35845000 7526500 0 37487000 0 4563 1364 3962 28049;28050;28051;28052;28053;28054 18258;18259;18260;18261 18261 4 ITELVQVR Unmodified 956.56548 0.56548059 1388 Karp_02136 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 43.41 43.677 2 0.0066635 15373 20181213_JW_Orientia_Karp_1_1 114.5 63.162 34359000 11943000 11894000 9116900 0 423880 443920 537460 0 4564 1388 3963 28055;28056;28057;28058;28059;28060 18262;18263 18262 2 ITESALAR Unmodified 859.47633 0.47633123 1262 Karp_01022 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 30.14 30.522 2 0.0059163 7066 20181213_JW_Orientia_Karp_3_2 116.88 39.143 67541000 25791000 9316500 11538000 5929200 2743100 2632400 6646500 2943600 4565 1262 3964 28061;28062;28063;28064;28065;28066;28067;28068 18264;18265;18266;18267;18268;18269 18269 6 ITESEEVVSR Unmodified 1147.5721 0.57208211 1543;1544 P02545;P02545-3;P02545-6;Q5I6Y5;Q8N519;W5X314;P02545-2;W8QEH3;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 31.92 32.22 2 6.2321E-09 8261 20181213_JW_Orientia_Karp_2_1 206.43 124.15 20123000 10355000 8236000 0 1532000 0 0 0 0 4566 1543;1544 3965 28069;28070;28071;28072 18270;18271;18272 18272 3 ITEYLAVLQR Unmodified 1204.6816 0.68157298 1190 Karp_00705 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 57.816 58.098 2 5.9771E-06 24524 20181213_JW_Orientia_Karp_1_1 169.44 102.48 35862000 13106000 5018700 15003000 0 0 1689700 0 1044900 4567 1190 3966 28073;28074;28075;28076;28077 18273;18274;18275;18276;18277 18273 2 ITFSHNPFSMPQGGIEAFNK Oxidation (M) 2237.0575 0.057538239 1168 Karp_00622 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 55.412 55.678 3 0.0040665 20769 20181213_JW_Orientia_Karp_2_1 95.954 53.307 116310000 42115000 12324000 19014000 16555000 17144000 9162500 0 0 4568 1168 3967 28078;28079;28080;28081;28082;28083 18278;18279;18280 18280 705 3 ITFSHNPFSMPQGGIEAFNK Unmodified 2221.0626 0.062623617 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS 1 60.433 60.632 3 0.034269 25448 20181213_JW_Orientia_Karp_1_3 69.986 31.894 0 0 0 0 0 0 0 0 0 4569 1168 3967 28084 18281 18281 1 ITGEAFVQFASQELAEK Unmodified 1866.9363 0.9363437 151 A0A024R7T3;P52597;B4DKS8 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 1 1 69.131 69.282 2 4.2296E-32 30817 20181213_JW_Orientia_Karp_1_3 284.91 191.07 102780000 32806000 0 33041000 0 11056000 0 21086000 4791800 4570 151 3968 28085;28086;28087;28088;28089;28090;28091;28092 18282;18283;18284;18285;18286;18287 18284 6 ITGNMGLAMK 2 Oxidation (M) 1066.5151 0.51510128 464 B2R761;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 2 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 25.581 25.962 2 0.010826 6148 20181213_JW_Orientia_Karp_1_2 86.136 60.03 34052000 5923400 7674700 0 4552600 3884900 2541000 6780600 2695100 4571 464 3969 28093;28094;28095;28096;28097;28098;28099 18288;18289;18290 18288 303;304 3 ITGYIIK Unmodified 806.49019 0.49019038 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617;A6YID7;H0Y4K8;O95608 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 41.271 41.608 2 0.01363 14261 20181213_JW_Orientia_Karp_1_1 114.72 46.236 327510000 228290000 77849000 0 909380 2750000 3606200 12738000 1363500 4572 85 3970 28100;28101;28102;28103;28104;28105;28106 18291;18292;18293;18294;18295 18291 5 ITHIPTGVVVSQQDEK Unmodified 1749.9261 0.92611336 1437 Karp_02402 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 40.506 40.836 3 0.0092088 12607 20181213_JW_Orientia_Karp_2_1 125.33 72.079 654540000 210220000 151460000 123700000 67043000 26677000 0 73103000 2331000 4573 1437 3971 28107;28108;28109;28110;28111;28112;28113 18296;18297;18298 18298 3 ITIADCGQLE Unmodified 1118.5278 0.52777445 356 V9HWF5;A8K486;P62937;B4DM82;P62937-2 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 By matching By MS/MS 1 1 55.672 55.798 2 0.012703 20661 20181213_JW_Orientia_Karp_2_2 88.495 43.414 3642600 1679300 0 0 0 1963300 0 0 0 4574 356 3972 28114;28115 18299 18299 1 ITKLETAMQEAQQALVSQDK 3 Deamidation (NQ) 2234.0988 0.098793931 411 A8MTL3 RNF212B RING finger protein 212B yes yes 0 3 0 1 By MS/MS 1 43.649 43.9 4 0.038715 14473 20181213_JW_Orientia_Karp_2_3 44.577 22.143 1263400 0 0 0 0 0 1263400 0 0 4575 411 3973 28116 18300 18300 1430;1431;1432 0 ITLDNAYMEK Oxidation (M) 1212.5696 0.56963927 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 40.488 40.801 2 0.00047769 13305 20181213_JW_Orientia_Karp_1_2 132.88 48.26 39420000 14822000 12169000 0 0 0 3636900 8792300 0 4576 1597 3974 28117;28118;28119;28120;28121;28122 18301;18302;18303;18304;18305;18306 18302 1219 6 ITLHIKPEYDNYLDHFQIK Unmodified 2386.2321 0.23213179 1251 Karp_00928 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 2 1 2 54.929 55.29 3;4 0.00079382 22340 20181213_JW_Orientia_Karp_1_2 115.26 81.059 369910000 47538000 85559000 73046000 19658000 100320000 41561000 0 2226000 4577 1251 3975 28123;28124;28125;28126;28127;28128;28129;28130;28131;28132;28133 18307;18308;18309;18310;18311;18312;18313 18309 7 ITLQDVVSHSK Unmodified 1225.6667 0.6666512 235 A4QPB0;A0A024RC65;P46940;Q6P1N4;H0YLE8;B4E2M0 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 44.382 44.714 3 0.017795 15364 20181213_JW_Orientia_Karp_1_3 79.23 39.215 22670000 0 15598000 6407700 664730 0 0 0 0 4578 235 3976 28134;28135;28136 18314 18314 1 ITLSLIVLDDSDK Unmodified 1430.7868 0.78682591 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.642 71.72 2 7.0361E-12 26098 20181213_JW_Orientia_Karp_3_1 207.88 160.27 45380000 12136000 4860900 3893500 2730700 4831200 3254600 13673000 0 4579 1170 3977 28137;28138;28139;28140;28141;28142;28143 18315;18316;18317;18318;18319;18320;18321 18321 7 ITMLQTQK Oxidation (M) 977.52157 0.52156686 1339 Karp_01469 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 2 2 2 2 2 1 25.445 25.828 2 0.0029714 5960 20181213_JW_Orientia_Karp_1_3 153.08 36.191 81987000 0 0 14896000 17445000 15798000 6542000 19869000 7436500 4580 1339 3978 28144;28145;28146;28147;28148;28149;28150;28151;28152;28153;28154;28155;28156;28157 18322;18323;18324;18325;18326;18327;18328 18325 901 7 ITNFDEAEEVFSTLMSNIVEPR Oxidation (M) 2556.2054 0.20538427 1262 Karp_01022 yes yes 0 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 75.372 75.379 3 0.011376 28177 20181213_JW_Orientia_Karp_3_1 74.703 42.583 73311000 23327000 11965000 18946000 1970300 5070000 5104300 6928900 0 4581 1262 3979 28158;28159;28160;28161;28162;28163;28164 18329;18330 18330 823 2 ITNFDEAEEVFSTLMSNIVEPR Unmodified 2540.2105 0.21046965 1262 Karp_01022 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 79.191 79.123 3 0.032244 32547 20181213_JW_Orientia_Karp_2_3 59.537 36.635 17214000 10164000 0 0 4334900 0 2714400 0 0 4582 1262 3979 28165;28166;28167 18331 18331 1 ITPENLPQILLQLK Unmodified 1618.9658 0.96579333 418 D6REM6;A8MXP9;P43243;D6R991;Q68D11 MATR3;DKFZp686K23100 Matrin-3 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 73.677 73.72 2 0.028267 34115 20181213_JW_Orientia_Karp_1_2 79.492 64.12 128200000 51458000 30788000 25873000 1337000 0 0 13707000 5038400 4583 418 3980 28168;28169;28170;28171;28172;28173 18332 18332 1 ITPESLNIIQQLK Unmodified 1495.861 0.86099391 1361 Karp_01814 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 63.741 63.973 2 0.0035758 27919 20181213_JW_Orientia_Karp_1_2 115.91 57.285 116780000 30417000 16917000 41393000 2476600 14292000 7776000 379350 3132100 4584 1361 3981 28174;28175;28176;28177;28178;28179;28180;28181 18333;18334;18335 18334 3 ITPSYVAFTPEGER Unmodified 1565.7726 0.77257283 1585 V9HWB4;P11021;B4DEF7 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.752 54.11 2 8.1124E-06 21234 20181213_JW_Orientia_Karp_1_3 177.04 98.1 489270000 186880000 57098000 107460000 48598000 40226000 35881000 9631800 3492100 4585 1585 3982 28182;28183;28184;28185;28186;28187;28188;28189 18336;18337;18338;18339;18340;18341;18342;18343;18344 18338 9 ITQIYSDIK Unmodified 1079.5863 0.58627561 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 2 2 42.692 43.009 2 4.2704E-10 13389 20181213_JW_Orientia_Karp_2_1 195.79 101.78 10552000000 3769800000 2897300000 2297600000 360800000 266950000 0 900540000 59345000 4586 1371 3983 28190;28191;28192;28193;28194;28195;28196;28197;28198;28199;28200;28201;28202;28203;28204;28205;28206 18345;18346;18347;18348;18349;18350;18351;18352;18353;18354;18355 18351 10 ITQIYSDIKPFADIAGIDVPDTSLPNSASVEQIQNK Unmodified 3886.984 0.98402875 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 72.676 72.738 3;4 7.354E-11 33157 20181213_JW_Orientia_Karp_1_3 114.18 87.349 13855000000 2937900000 3654000000 3266500000 400010000 690220000 736700000 1779100000 390890000 4587 1371 3984 28207;28208;28209;28210;28211;28212;28213;28214;28215;28216;28217;28218;28219 18356;18357;18358;18359;18360;18361;18362;18363;18364;18365 18358 10 ITQIYSDIKPFADIAGIDVPDTSLPNSASVEQIQNK Deamidation (NQ) 3887.968 0.96804434 1371 Karp_02001 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 73.359 73.411 3 7.0294E-09 33411 20181213_JW_Orientia_Karp_1_3 100.88 74.39 1396400000 0 661140000 155150000 0 192550000 122830000 263000000 1757000 4588 1371 3984 28220;28221;28222;28223;28224;28225 18366;18367;18368 18367 841;1848 3 ITSADVSINIR Unmodified 1187.651 0.65100113 1236 Karp_00903 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.374 48.719 2 7.6387E-06 17027 20181213_JW_Orientia_Karp_2_3 192.12 90.22 307220000 60315000 92190000 34975000 40115000 29722000 22759000 47678 27095000 4589 1236 3985 28226;28227;28228;28229;28230;28231;28232;28233 18369;18370;18371;18372;18373;18374 18372 6 ITSEIPQTER Unmodified 1172.6037 0.60371659 977 H0YHG0;P82979;Q567R9;F8VZQ9 SARNP;CIP29 SAP domain-containing ribonucleoprotein yes no 0 0 0 0 By MS/MS By MS/MS 1 1 34.546 34.946 2 0.0062454 9208 20181213_JW_Orientia_Karp_2_2 100.25 2.28 5181000 0 0 0 2332800 2848200 0 0 0 4590 977 3986 28234;28235 18375;18376 18376 2 ITSTALSTDSQVLAR Unmodified 1561.8312 0.83115034 1339 Karp_01469 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.548 47.893 2 2.5618E-37 17390 20181213_JW_Orientia_Karp_1_2 247.13 149.17 358840000 67463000 82010000 116410000 22249000 24373000 20469000 4528900 21335000 4591 1339 3987 28236;28237;28238;28239;28240;28241;28242;28243 18377;18378;18379;18380;18381;18382;18383;18384 18378 8 ITSVLER Unmodified 816.47052 0.47051757 1281 Karp_01117 yes yes 0 0 0 0 By MS/MS 1 35.491 35.491 2 0.025267 11024 20181213_JW_Orientia_Karp_1_1 111.65 42.473 0 0 0 0 0 0 0 0 0 4592 1281 3988 28244 18385 18385 1 ITTDISTAR Unmodified 976.51892 0.51892433 1184 Karp_00677 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 33.45 33.777 2 0.00024541 8983 20181213_JW_Orientia_Karp_2_1 172.25 105.82 281200000 65025000 60606000 112000000 13740000 28019000 0 0 1806300 4593 1184 3989 28245;28246;28247;28248;28249;28250;28251 18386;18387;18388;18389;18390;18391 18389 6 ITVDPTTDGPTK Unmodified 1243.6296 0.62959699 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 38.322 38.672 2 0.00071508 12634 20181213_JW_Orientia_Karp_1_1 141.91 95.454 32427000 6257600 7173100 13413000 649790 0 0 4933300 0 4594 852 3990 28252;28253;28254;28255;28256 18392;18393;18394 18392 3 ITVHINTEYTPIK Unmodified 1527.8297 0.82969378 1332 Karp_01370 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 46.771 47.021 3 0.00046836 16962 20181213_JW_Orientia_Karp_1_2 143.94 115.51 124500000 57246000 34742000 20414000 4782100 0 7314600 0 0 4595 1332 3991 28257;28258;28259;28260;28261 18395;18396 18396 2 ITVSMDK Oxidation (M) 808.40005 0.40005474 1251 Karp_00928 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 22.691 22.955 2 0.023053 4872 20181213_JW_Orientia_Karp_1_2 92.467 26.795 29784000 6130100 9206300 2945400 4477200 2131400 2097800 2795700 0 4596 1251 3992 28262;28263;28264;28265;28266;28267;28268 18397 18397 811 1 ITVSQCEEIAK Unmodified 1276.6333 0.63330216 1174 Karp_00628 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.153 37.487 2 8.014E-19 12040 20181213_JW_Orientia_Karp_1_1 238.51 155.87 191630000 58470000 36720000 43847000 18503000 12771000 0 21318000 0 4597 1174 3993 28269;28270;28271;28272;28273;28274 18398;18399;18400;18401;18402;18403 18398 6 ITVTSEVPFSK Unmodified 1206.6496 0.64960415 1051 K7EJT5;K7EP65;K7EKS7;K7ELC4;K7EMH1;K7ERI7;Q7Z4W8;P35268 RPL22 60S ribosomal protein L22 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.671 51.016 2 1.7515E-09 19825 20181213_JW_Orientia_Karp_1_1 213.8 136.97 1091300000 239250000 181590000 138640000 145100000 71586000 140820000 155580000 18785000 4598 1051 3994 28275;28276;28277;28278;28279;28280;28281;28282 18404;18405;18406;18407;18408;18409;18410;18411 18404 8 ITWTQAPGR Unmodified 1028.5403 0.54032847 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 40.035 40.352 2 0.012667 13080 20181213_JW_Orientia_Karp_1_2 88.819 49.156 62450000 17815000 16664000 12276000 4392800 0 1231100 10071000 0 4599 852 3995 28283;28284;28285;28286;28287;28288 18412 18412 1 ITWVINLYGSNK Unmodified 1406.7558 0.75580056 1300 Karp_01233 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 65.865 66.115 2 4.004E-05 26214 20181213_JW_Orientia_Karp_2_3 169.65 77.993 14415000 0 0 0 485880 5032000 3354000 5542900 0 4600 1300 3996 28289;28290;28291;28292 18413;18414 18414 2 ITYGETGGNSPVQEFTVPGSK Unmodified 2167.0433 0.043327963 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 56.264 56.53 2;3 5.2207E-61 22717 20181213_JW_Orientia_Karp_1_3 265.64 228.7 370060000 103580000 104420000 85230000 29405000 27444000 19988000 0 0 4601 85 3997 28293;28294;28295;28296;28297;28298;28299;28300;28301;28302;28303;28304 18415;18416;18417;18418;18419;18420 18417 6 ITYGNSNPSFELVEADIPTPK Unmodified 2291.1321 0.13214297 1129 Karp_00368 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.882 68.108 2 4.7635E-29 24068 20181213_JW_Orientia_Karp_3_1 218.28 174.88 59488000 16752000 12465000 16351000 0 2570700 0 6197600 5151700 4602 1129 3998 28305;28306;28307;28308;28309;28310 18421;18422;18423;18424;18425;18426;18427 18426 7 ITYGNSNPSFELVEADIPTPK Deamidation (NQ) 2292.1162 0.11615855 1129 Karp_00368 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 72.03 72.145 2 2.672E-37 32989 20181213_JW_Orientia_Karp_1_1 226.06 187.76 46859000 17338000 0 15885000 0 0 0 10932000 2703600 4603 1129 3998 28311;28312;28313;28314 18428;18429;18430;18431 18428 518;519 4 ITYGNSNPSFELVEADIPTPK 2 Deamidation (NQ) 2293.1002 0.10017414 1129 Karp_00368 yes yes 0 2 0 0 By MS/MS 1 72.154 72.104 2 0.018907 29416 20181213_JW_Orientia_Karp_2_3 83.106 42.014 0 0 0 0 0 0 0 0 0 4604 1129 3998 28315 18432 18432 518;519 1 ITYNESMLR Oxidation (M) 1141.5438 0.54375887 1168 Karp_00622 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 35.372 35.745 2 7.1129E-06 10300 20181213_JW_Orientia_Karp_3_1 196.79 116.57 170650000 48418000 26016000 20882000 11794000 0 6235900 30827000 26475000 4605 1168 3999 28316;28317;28318;28319;28320;28321;28322 18433;18434;18435;18436;18437;18438 18438 706 6 ITYNESMLR Unmodified 1125.5488 0.54884425 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 42.852 43.194 2 6.6286E-06 15063 20181213_JW_Orientia_Karp_1_1 199.89 119.66 113570000 33848000 40034000 21127000 0 0 0 17802000 764670 4606 1168 3999 28323;28324;28325;28326;28327 18439;18440;18441;18442 18439 4 ITYQPSTGEGNEQTTTIGGR Unmodified 2108.9974 0.9974404 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y4P7 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 41.479 41.662 2 2.6658E-128 13746 20181213_JW_Orientia_Karp_1_2 319.8 239.63 48414000 12659000 17407000 18348000 0 0 0 0 0 4607 852 4000 28328;28329;28330 18443;18444;18445 18444 3 IVAEEFLK Unmodified 947.53278 0.53278348 947 F8WCF6;P59998;P59998-3;R4GN08;H7C0A3;P59998-4 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.793 51.043 2 0.013419 19289 20181213_JW_Orientia_Karp_1_3 98.299 45.897 89733000 29799000 25639000 10695000 11672000 3843400 8085700 0 0 4608 947 4001 28331;28332;28333;28334;28335;28336 18446;18447;18448 18448 3 IVAIVDGTPITSHQLDK Unmodified 1805.9887 0.98871362 1443 Karp_02418 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 50.925 51.27 3 0.016714 17441 20181213_JW_Orientia_Karp_3_2 89.624 46.594 1556800000 170700000 293700000 463880000 258120000 99935000 181160000 82764000 6507200 4609 1443 4002 28337;28338;28339;28340;28341;28342;28343;28344 18449;18450 18449 2 IVAMEAATTNADDVIAK Oxidation (M) 1747.8662 0.86621522 1381 Karp_02118 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 44.548 44.919 2 0.00060235 15645 20181213_JW_Orientia_Karp_1_2 123.1 51.209 8895700 0 5030100 0 0 0 1277600 0 2588000 4610 1381 4003 28345;28346;28347;28348;28349;28350 18451;18452;18453;18454;18455 18451 980 5 IVAMEAATTNADDVIAK Unmodified 1731.8713 0.8713006 1381 Karp_02118 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 52.435 52.78 2 0.001211 18394 20181213_JW_Orientia_Karp_3_1 116.98 75.598 77129000 21735000 20751000 17792000 5592100 4334800 2033500 4590400 301290 4611 1381 4003 28351;28352;28353;28354;28355;28356;28357;28358 18456;18457;18458 18457 3 IVDAQIGLSLLEVAHQNK Unmodified 1947.0789 0.078925608 1279 Karp_01113 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 64.195 64.427 3 0.0391 25043 20181213_JW_Orientia_Karp_2_2 54.953 34.585 21259000 0 0 8446600 438850 6482400 4166700 0 1724800 4612 1279 4004 28359;28360;28361;28362;28363 18459 18459 1 IVDDWANDGWGLK Unmodified 1487.7045 0.70449327 1637 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 63.438 63.625 2 0.0011465 27219 20181213_JW_Orientia_Karp_1_3 137.4 93.978 72280000 0 21460000 37374000 0 8321700 5123400 0 0 4613 1637 4005 28364;28365;28366;28367 18460;18461 18461 2 IVDDWANDGWGLK Deamidation (NQ) 1488.6885 0.68850885 1637 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 1 0 0 By MS/MS By matching By matching 1 1 1 66.017 66.117 2 0.024325 28793 20181213_JW_Orientia_Karp_1_3 93.839 62.691 10111000 0 0 6834100 0 2260200 1016600 0 0 4614 1637 4005 28368;28369;28370 18462 18462 1091 1 IVDFLALELQK Unmodified 1287.7438 0.74383889 1202 Karp_00823 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 71.033 71.17 2 0.00010667 32160 20181213_JW_Orientia_Karp_1_3 160.53 92.515 42855000 0 9525900 9519800 1991400 4243100 3858400 12215000 1500600 4615 1202 4006 28371;28372;28373;28374;28375;28376;28377;28378 18463;18464;18465;18466;18467;18468 18465 6 IVDNINTIYDYTSR Deamidation (NQ) 1686.8101 0.81008055 1336 Karp_01409 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 57.189 57.452 2 0.0020373 23669 20181213_JW_Orientia_Karp_1_2 133.88 99.376 12825000 3686700 4179300 0 2798700 2159900 0 0 0 4616 1336 4007 28379;28380;28381;28382 18469;18470 18470 775 2 IVDNINTIYDYTSR Unmodified 1685.8261 0.82606496 1336 Karp_01409 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 57.591 57.936 2 8.3417E-46 23927 20181213_JW_Orientia_Karp_1_2 260.5 199.81 242080000 52302000 47719000 80621000 16569000 21459000 15055000 175170 8182300 4617 1336 4007 28383;28384;28385;28386;28387;28388;28389;28390 18471;18472;18473;18474;18475;18476 18472 6 IVEIGDENATLDGTDVLFTGR Unmodified 2234.1067 0.1066565 1536 V9HW53;O95865;Q5SSV3;Q5SRR8;H0Y7N1 HEL-S-277;DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 71.651 71.729 2 5.995E-109 32784 20181213_JW_Orientia_Karp_1_1 306.37 261.09 63023000 14331000 13122000 14996000 3222300 5057100 4000600 8293500 0 4618 1536 4008 28391;28392;28393;28394;28395;28396;28397 18477;18478 18477 2 IVELGTPDVWNALAK Unmodified 1624.8825 0.88245763 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 70.777 70.907 2 1.3839E-27 32273 20181213_JW_Orientia_Karp_1_2 234.24 190.82 184510000 47029000 41551000 24609000 0 14042000 7478700 46392000 3410400 4619 1169 4009 28398;28399;28400;28401;28402;28403;28404 18479;18480;18481;18482;18483;18484 18480 6 IVELNVENR Unmodified 1084.5877 0.58767259 1344 Karp_01520 yes yes 0 0 0 0 By MS/MS 1 41.773 42.123 2 0.014013 14121 20181213_JW_Orientia_Karp_1_2 87.806 41.417 3965700 0 3965700 0 0 0 0 0 0 4620 1344 4010 28405 18485 18485 1 IVEMSTSK Oxidation (M) 909.44773 0.44773322 1018 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 17.368 17.597 2 0.0089927 2977 20181213_JW_Orientia_Karp_3_1 102.51 45.336 21898000 5204300 5425400 5852200 3647400 0 0 1768700 0 4621 1018 4011 28406;28407;28408;28409;28410 18486;18487;18488;18489 18489 560 4 IVEVLLMK Oxidation (M) 959.57254 0.5725398 1663 P38159;H0Y6E7;H3BT71;P38159-2;H3BR27;P38159-3;A8K8A6;O75526 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.516 50.816 2 0.0040799 17894 20181213_JW_Orientia_Karp_2_2 124.08 61.362 60107000 0 11559000 5110800 22980000 8237000 12221000 0 0 4622 1663 4012 28411;28412;28413;28414;28415;28416 18490;18491;18492;18493;18494;18495 18494 1293 6 IVEVLLMK Unmodified 943.57763 0.57762518 1663 P38159;H0Y6E7;H3BT71;P38159-2;H3BR27;P38159-3;A8K8A6;O75526 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 57.54 57.872 2 0.0047583 22022 20181213_JW_Orientia_Karp_2_3 126.28 90.398 49731000 0 22806000 7299800 0 4299700 13213000 0 2111600 4623 1663 4012 28417;28418;28419;28420;28421;28422 18496;18497;18498;18499;18500 18500 5 IVGGAIPK Unmodified 753.47487 0.47487467 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 33.334 33.707 2 0.0087781 9673 20181213_JW_Orientia_Karp_1_3 107.74 35.795 403500000 119720000 118350000 101950000 23319000 17125000 0 18385000 4649800 4624 1094 4013 28423;28424;28425;28426;28427;28428;28429 18501;18502;18503;18504 18503 4 IVGLDQVTGMTETAFGSAYK Oxidation (M) 2103.0194 0.019421398 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;A5XEH4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS 1 64.029 64.279 2 0.011259 28010 20181213_JW_Orientia_Karp_1_2 99.069 68.631 0 0 0 0 0 0 0 0 0 4625 944 4014 28430 18505 18505 533 1 IVGPSGAAVPCK Unmodified 1154.6118 0.61177885 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 37.463 37.784 2 0.0050765 11628 20181213_JW_Orientia_Karp_1_3 98.044 62.533 97974000 22357000 26984000 25786000 1726900 1900900 992140 18227000 0 4626 1615 4015 28431;28432;28433;28434;28435;28436;28437;28438 18506;18507;18508;18509;18510 18508 5 IVILTFNADNDK Unmodified 1361.7191 0.7190807 1439 Karp_02406 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.808 60.058 2 1.4453E-07 25346 20181213_JW_Orientia_Karp_1_2 189.17 137.97 187330000 50877000 51325000 37991000 8985000 18281000 19866000 0 0 4627 1439 4016 28439;28440;28441;28442;28443;28444 18511;18512;18513;18514;18515;18516;18517 18513 7 IVKNITGLALK Unmodified 1168.7543 0.75434399 1171 Karp_00625 yes yes 0 0 0 1 By MS/MS By MS/MS 1 1 42.076 42.35 3 0.0071315 14030 20181213_JW_Orientia_Karp_1_3 113.67 62.143 0 0 0 0 0 0 0 0 0 4628 1171 4017 28445;28446 18518;18519 18519 2 IVLEVVQHIGDDIVR Unmodified 1703.957 0.95701956 1341 Karp_01515 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 63.626 63.822 2;3 0.00042506 27801 20181213_JW_Orientia_Karp_1_2 142.85 103.7 139590000 7053500 23531000 68224000 1543900 23940000 12725000 0 2575800 4629 1341 4018 28447;28448;28449;28450;28451;28452;28453;28454;28455;28456;28457 18520;18521;18522;18523;18524;18525 18520 6 IVLINPDVK Unmodified 1009.6172 0.61718181 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.025 51.327 2 0.003191 19992 20181213_JW_Orientia_Karp_1_1 112.84 55.252 352150000 55514000 90219000 43529000 76928000 34143000 51765000 0 56452 4630 1458 4019 28458;28459;28460;28461;28462;28463;28464 18526;18527;18528;18529;18530;18531;18532;18533 18526 8 IVLLDSSLEYK Unmodified 1278.7071 0.70711903 543 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368-2;P49368;Q5SZX6 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 59.989 60.327 2 0.014093 25588 20181213_JW_Orientia_Karp_1_2 89.029 31.981 19494000 7668100 10623000 0 1075900 0 0 126720 0 4631 543 4020 28465;28466;28467;28468 18534;18535 18535 2 IVLQIDNAR Unmodified 1040.5978 0.59784335 208;555 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9;B4DE59 KRT18 Keratin, type I cytoskeletal 18 no no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 46.011 46.284 2 0.001664 16158 20181213_JW_Orientia_Karp_1_3 122.28 75.855 241630000 56951000 78726000 59745000 13177000 11607000 14314000 0 7111300 4632 208;555 4021 28469;28470;28471;28472;28473;28474;28475 18536;18537;18538;18539;18540;18541 18538 6 IVNEGGIDPLLR Unmodified 1294.7245 0.72450043 1927 Q92626 PXDN Peroxidasin homolog yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 55.545 55.86 2 0.020123 23094 20181213_JW_Orientia_Karp_1_1 85.813 59.14 57975000 20057000 15937000 13542000 3103900 2392200 2491400 0 451230 4633 1927 4022 28476;28477;28478;28479;28480;28481;28482 18542 18542 1 IVNEPTAAALAYGFDK Unmodified 1678.8566 0.85663681 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 60.073 60.409 2 1.238E-37 25483 20181213_JW_Orientia_Karp_1_2 246.77 176.36 3915600000 1104100000 836930000 725890000 296200000 449760000 363990000 134300000 4443400 4634 1074 4023 28483;28484;28485;28486;28487;28488;28489;28490;28491;28492 18543;18544;18545;18546;18547;18548;18549;18550;18551;18552;18553;18554;18555;18556 18546 14 IVNEPTAAALAYGFDK Deamidation (NQ) 1679.8407 0.8406524 1074 Karp_00050 yes yes 0 1 0 0 By matching By MS/MS By matching 1 1 1 62.793 62.96 2 0.00020328 27129 20181213_JW_Orientia_Karp_1_2 147.51 97.053 23911000 11849000 9620000 0 0 0 2442500 0 0 4635 1074 4023 28493;28494;28495 18557 18557 414 1 IVQAEGEAEAAK Unmodified 1214.6143 0.61428128 926 F5GY37;J3KPX7;Q99623 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 27.431 27.655 2 0.0020582 7257 20181213_JW_Orientia_Karp_1_1 121.02 61.671 13626000 9533600 1814700 2056600 220740 0 0 0 0 4636 926 4024 28496;28497;28498;28499 18558;18559;18560 18558 3 IVQEDPSILQSVYNK Unmodified 1731.9043 0.90431529 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 2 2 2 3 56.704 57.036 2;3 1.4642E-27 21187 20181213_JW_Orientia_Karp_2_2 239.38 201.78 2032400000 485700000 530320000 619860000 116470000 137210000 113560000 14936000 14333000 4637 1166 4025 28500;28501;28502;28503;28504;28505;28506;28507;28508;28509;28510;28511;28512;28513;28514;28515;28516;28517 18561;18562;18563;18564;18565;18566;18567;18568;18569;18570;18571;18572;18573 18567 12 IVQINGEPMIEDVSSK Oxidation (M);Deamidation (NQ) 1774.8659 0.86588087 1330 Karp_01368 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 1 53.197 53.527 2 3.2631E-05 21322 20181213_JW_Orientia_Karp_1_1 157.86 111.38 119390000 33844000 23942000 30721000 7253500 5189000 5725800 12547000 163550 4638 1330 4026 28518;28519;28520;28521;28522;28523;28524;28525;28526;28527;28528;28529 18574;18575;18576;18577;18578;18579;18580;18581 18574 767 887 8 IVQMTEAEVR Oxidation (M) 1190.5965 0.59652272 1724 V9HW04;P62140;C9J9S3;C9JP48 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 0 0 1 0 By MS/MS 1 29.612 29.612 2 0.0055199 8186 20181213_JW_Orientia_Karp_1_1 99.53 44.419 3507100 3507100 0 0 0 0 0 0 0 4639 1724 4027 28530 18582 18582 1353 1 IVQTYHVNMAGTNPYTTITPQEINGK Oxidation (M);Deamidation (NQ) 2906.412 0.412023 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;H7C5W8 ACTN1 Alpha-actinin-1 yes no 0 1 1 0 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 50.957 51.299 3 0.028708 19999 20181213_JW_Orientia_Karp_1_1 47.208 25.514 63645000 18794000 14294000 25611000 4101200 0 0 0 844760 4640 133 4028 28531;28532;28533;28534;28535 18583;18584;18585;18586 18584 53 4 IVQVVTAEAVAVLK Unmodified 1438.8759 0.87591569 82 A0A024R407;A0A024R3Z1;P11137-3;P11137;Q6NYC5;A8K5Y1;A0A024R409;Q59FX9;A0A024R3Y8;P11137-2;P11137-4;H7BZB9;E7EV03 MAP2 Microtubule-associated protein;Microtubule-associated protein 2 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 62.637 62.953 2 4.6553E-05 24291 20181213_JW_Orientia_Karp_2_2 164.48 123.2 6739200 0 1909200 0 792370 4037600 0 0 0 4641 82 4029 28536;28537;28538 18587 18587 1 IVSGEAESVEVTPENLQDFVGKPVFTVER Unmodified 3174.6085 0.6084742 533 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776-3;P36776-2;P36776;B4DPX0;K7ERR6 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 0 0 0 1 By MS/MS 1 69.846 69.945 3 0.0020407 31303 20181213_JW_Orientia_Karp_1_3 69.435 46.679 9399600 0 0 9399600 0 0 0 0 0 4642 533 4030 28539 18588 18588 1 IVSLAEEVL Unmodified 971.55391 0.55391285 1232 Karp_00899 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 72.07 72.203 2 0.0007922 32793 20181213_JW_Orientia_Karp_1_3 143 67.694 44040000 0 2874000 5940300 0 0 0 35225000 0 4643 1232 4031 28540;28541;28542;28543;28544 18589;18590;18591;18592;18593 18591 5 IVSLNYNPGK Unmodified 1103.5975 0.597509 1119 Karp_00311 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.235 43.565 2 5.7849E-09 14812 20181213_JW_Orientia_Karp_1_2 213.85 144.22 196170000 50732000 66014000 36149000 17040000 2978600 0 22201000 1057600 4644 1119 4032 28545;28546;28547;28548;28549;28550;28551;28552 18594;18595;18596;18597;18598;18599 18595 6 IVSQLLTLMDGLK Unmodified 1429.8214 0.82143728 1708 V9HW80;P55072;Q96IF9;Q9HAP1 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 73.444 73.496 2 1.0922E-12 27276 20181213_JW_Orientia_Karp_3_1 210.15 141.3 41092000 0 13150000 12053000 0 0 0 11531000 4358400 4645 1708 4033 28553;28554;28555;28556 18600;18601;18602 18601 3 IVSSSDVGHDEYSTQSLVK Unmodified 2049.9855 0.98547873 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 41.835 42.01 3 0.0051127 13974 20181213_JW_Orientia_Karp_1_2 80.459 50.307 72170000 48608000 23562000 0 0 0 0 0 0 4646 506 4034 28557;28558 18603;18604 18604 2 IVVFNDGIVNIIK Unmodified 1442.8497 0.84970094 1302 Karp_01239 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.229 70.351 2 3.1907E-11 31883 20181213_JW_Orientia_Karp_1_2 193.28 124.5 585600000 133040000 72320000 66905000 37780000 73744000 32798000 169020000 0 4647 1302 4035 28559;28560;28561;28562;28563;28564;28565 18605;18606;18607;18608;18609;18610;18611 18606 7 IVVFNDGIVNIIK Deamidation (NQ) 1443.8337 0.83371653 1302 Karp_01239 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.338 73.368 2 2.874E-11 27197 20181213_JW_Orientia_Karp_3_1 204.56 142.78 186350000 74948000 27375000 28029000 0 9874700 13943000 26538000 5642800 4648 1302 4035 28566;28567;28568;28569;28570;28571;28572 18612;18613;18614;18615;18616;18617;18618 18617 737 6 IVVLLQR Unmodified 839.55927 0.559273 1772 Q6FHU3;Q06323;Q06323-3;Q06323-2;H0YLU2;Q86SZ9 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 48.576 48.8 2 0.017741 18433 20181213_JW_Orientia_Karp_1_1 106.29 49.776 12633000 6711200 0 2290200 3085400 546160 0 0 0 4649 1772 4036 28573;28574;28575;28576;28577 18619;18620;18621 18619 3 IVVTMCVGDAVVDSK Oxidation (M) 1607.7899 0.78987915 1230 Karp_00897 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 49.128 49.471 2 3.7411E-05 18232 20181213_JW_Orientia_Karp_1_3 158.34 98.795 36215000 14395000 0 17129000 0 0 1998000 72778 2620600 4650 1230 4037 28578;28579;28580;28581;28582;28583 18622;18623;18624 18624 795 3 IWCFGPDGTGPNILTDITK Unmodified 2104.0299 0.029926505 1593 P13639;Q8TA90;B4DPU3;Q6W6M8 EEF2 Elongation factor 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 73.761 73.785 2 1.2131E-54 34169 20181213_JW_Orientia_Karp_1_2 284.51 230.17 62034000 20032000 15745000 20088000 0 0 0 6168300 0 4651 1593 4038 28584;28585;28586;28587 18625;18626 18625 2 IWHHTFYNELR Unmodified 1514.7419 0.74188183 1717;1743;351;1835 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;Q7Z7J6;Q562Y4;Q562X7;Q562X6;Q562X4;Q562X2;Q562X1;Q562X0;Q562W2;Q562U1;Q562U0;Q562T8;Q562T6;Q562T5;Q562T4;Q562T3;Q562T0;Q562R6;Q562R5;Q562R0;Q562Q9;Q562Q8;Q562Q6;Q562Q4;Q562Q2;Q562Q0;Q562P8;Q562L3;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;G5E9R0;E7EVS6;C9JZR7;C9JUM1;Q6S8J3;A5A3E0;P0CG38;Q562Z7;Q562Y6;Q562X9;Q562S0;Q562N8;Q562N0;Q562L5;L0R5C4;Q9BYX7;P0CG39;Q562Y8;Q562N2;Q562M5;Q562U2;Q562P9;Q562N6;Q562N4;Q562L6;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282;Q562M3 ACTA1;ACTC1;ACT;PS1TP5BP1;ACTB;POTEE;POTEF;POTEI;POTEM;POTEKP;POTEJ;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 4 1 5 4 2 37.704 38.052 2;3;4 2.3473E-05 12078 20181213_JW_Orientia_Karp_1_1 195.51 112.66 9658700000 4685800000 1917500000 1848600000 275120000 110380000 19594000 800710000 1050300 4652 351;1717;1743;1835 4039 28588;28589;28590;28591;28592;28593;28594;28595;28596;28597;28598;28599;28600;28601;28602;28603;28604;28605;28606;28607;28608;28609;28610;28611;28612 18627;18628;18629;18630;18631;18632;18633;18634;18635;18636;18637;18638;18639;18640;18641 18627 14 IWHHTFYNELR Deamidation (NQ) 1515.7259 0.72589741 1717;1743;351;1835 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;Q7Z7J6;Q562Y4;Q562X7;Q562X6;Q562X4;Q562X2;Q562X1;Q562X0;Q562W2;Q562U1;Q562U0;Q562T8;Q562T6;Q562T5;Q562T4;Q562T3;Q562T0;Q562R6;Q562R5;Q562R0;Q562Q9;Q562Q8;Q562Q6;Q562Q4;Q562Q2;Q562Q0;Q562P8;Q562L3;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;G5E9R0;E7EVS6;C9JZR7;C9JUM1;Q6S8J3;A5A3E0;P0CG38;Q562Z7;Q562Y6;Q562X9;Q562S0;Q562N8;Q562N0;Q562L5;L0R5C4;Q9BYX7;P0CG39;Q562Y8;Q562N2;Q562M5;Q562U2;Q562P9;Q562N6;Q562N4;Q562L6;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282;Q562M3 ACTA1;ACTC1;ACT;PS1TP5BP1;ACTB;POTEE;POTEF;POTEI;POTEM;POTEKP;POTEJ;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 2 2 2 3 1 41.026 41.342 2;3 6.718E-07 12470 20181213_JW_Orientia_Karp_2_1 180.19 91.003 761000000 234670000 171120000 196630000 32545000 4293200 8320600 104110000 9318700 4653 351;1717;1743;1835 4039 28613;28614;28615;28616;28617;28618;28619;28620;28621;28622;28623;28624;28625;28626;28627;28628;28629;28630;28631 18642;18643;18644;18645;18646;18647;18648;18649;18650;18651;18652;18653 18648 138 11 IWQQQNPSK Unmodified 1127.5724 0.57235688 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 27.329 27.687 2 0.00013985 6417 20181213_JW_Orientia_Karp_2_1 186.76 104.81 292450000 89917000 48287000 43919000 16792000 21598000 9181900 36011000 26744000 4654 1266 4040 28632;28633;28634;28635;28636;28637;28638;28639 18654;18655;18656;18657;18658;18659;18660;18661 18657 8 IYAGEGACQFLFLK Unmodified 1615.8068 0.80684985 1454 Karp_02591 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 66.175 66.35 2 0.00011927 29595 20181213_JW_Orientia_Karp_1_1 160.72 107.13 39004000 13794000 0 13069000 0 10623000 0 1518500 0 4655 1454 4041 28640;28641;28642;28643 18662;18663 18662 2 IYATNLVLD Unmodified 1020.5492 0.54916182 1096 Karp_00250 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.288 67.497 2 6.4639E-06 26257 20181213_JW_Orientia_Karp_3_2 200.16 128.28 103970000 40955000 3540500 28886000 512900 19462000 0 0 10618000 4656 1096 4042 28644;28645;28646;28647;28648;28649;28650 18664;18665;18666;18667;18668 18668 5 IYDAVSGIDTQIIYHK Unmodified 1834.9465 0.94651445 733 B7Z938;Q5D044;H0UI49;Q16363-2;Q16363;H0YAP9 LAMA4 Laminin subunit alpha-4 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 55.823 56.023 3 0.0043168 22404 20181213_JW_Orientia_Karp_1_3 92.939 70.785 49453000 27301000 9534800 10279000 0 0 2339100 0 0 4657 733 4043 28651;28652;28653;28654 18669;18670 18670 2 IYDLDNSVTSVIK Unmodified 1465.7664 0.76642482 1387 Karp_02135 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 60.125 60.417 2 0.00014632 25965 20181213_JW_Orientia_Karp_1_1 163.12 95.101 37694000 6484200 11534000 8624700 3205900 3993500 3417200 434880 0 4658 1387 4044 28655;28656;28657;28658;28659;28660;28661 18671 18671 1 IYDLENK Unmodified 893.44945 0.44944778 1184 Karp_00677 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 35.741 36.091 2 0.018677 11321 20181213_JW_Orientia_Karp_1_1 104.37 1.0816 128020000 25794000 39332000 32670000 6373300 0 0 23854000 0 4659 1184 4045 28662;28663;28664;28665;28666;28667 18672;18673 18672 2 IYEAINAHVVGQQQAAK Unmodified 1838.9639 0.96389585 1435 Karp_02393 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 38.967 39.3 3 0.026628 13124 20181213_JW_Orientia_Karp_1_1 55.755 29.631 54886000 12448000 16778000 17772000 2652600 0 702780 4532800 0 4660 1435 4046 28668;28669;28670;28671;28672;28673 18674 18674 1 IYEFPETDDEEENK Unmodified 1756.7316 0.73155546 2;1842 B4DNE4;G3V1Q4;B4DPQ6;A0A023T695;B4DUD6;Q8TC62;Q3LIE9;A4GYY8;E7ES33;E7EPK1;A8K3D0;Q16181-2;Q16181;H0Y3Y4;Q59EY4 SEPT7;Nbla02942;DKFZp686F17268 Septin-7 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 49.222 49.405 2 0.00032266 18718 20181213_JW_Orientia_Karp_1_1 148.28 97.004 34797000 12441000 12677000 9678800 0 0 0 0 0 4661 2;1842 4047 28674;28675;28676 18675;18676;18677 18675 3 IYFMAGSSR Oxidation (M) 1046.4855 0.48551571 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71;B4DHT9;Q58FF2 TRA1;HEL-S-125m;HSP90B1;GRP94c Endoplasmin yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 1 2 2 1 42.295 42.61 2 0.0097427 11471 20181213_JW_Orientia_Karp_3_1 90.709 27.867 117960000 31579000 33267000 29755000 5935300 0 3220100 14201000 0 4662 1598 4048 28677;28678;28679;28680;28681;28682;28683;28684;28685;28686 18678;18679;18680;18681 18681 1223 4 IYGGDTTHIPLK Unmodified 1313.698 0.69795133 1223 Karp_00890 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.398 40.698 3 0.0092004 13107 20181213_JW_Orientia_Karp_1_3 107.09 40.793 99068000 27228000 42250000 13416000 3219300 957060 0 11998000 0 4663 1223 4049 28687;28688;28689;28690;28691;28692 18682;18683 18683 2 IYGLGSLALYEK Unmodified 1325.7231 0.72310344 1658 Q8TAS0;P36542;B4DFE6;B4DL14;P36542-2 ATP5C1 ATP synthase subunit gamma;ATP synthase subunit gamma, mitochondrial yes no 0 0 0 0 By MS/MS 1 62.852 63.2 2 0.0022405 24938 20181213_JW_Orientia_Karp_2_1 144.77 69.725 0 0 0 0 0 0 0 0 0 4664 1658 4050 28693 18684 18684 1 IYGTAWGK Unmodified 894.45995 0.45995289 1376 Karp_02113 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 39.972 40.332 2 0.010686 12522 20181213_JW_Orientia_Karp_3_1 102.71 57.992 104000000 38644000 22111000 20802000 8242400 0 0 14096000 106740 4665 1376 4051 28694;28695;28696;28697;28698;28699 18685;18686;18687;18688 18688 4 IYHPNIDEK Unmodified 1127.5611 0.56112349 43 A8K4W8;A0A024R1A4;P68036-2;P68036;P68036-3;I1SRC5 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 29.962 30.212 3 0.00044341 8462 20181213_JW_Orientia_Karp_1_1 128.86 52.083 35698000 15677000 13233000 3266300 2076700 0 1444900 0 0 4666 43 4052 28700;28701;28702;28703;28704;28705;28706;28707 18689;18690;18691;18692;18693;18694;18695;18696 18689 8 IYIDSNNNPER Unmodified 1333.6262 0.62624295 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 35.892 36.092 2 0.0010596 11326 20181213_JW_Orientia_Karp_1_1 128.51 75.728 85457000 30771000 29995000 24187000 0 504850 0 0 0 4667 1757 4053 28708;28709;28710;28711 18697;18698 18697 2 IYLDNWQK Unmodified 1078.5447 0.54474515 1283 Karp_01146 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.07 48.415 2 0.0041971 16796 20181213_JW_Orientia_Karp_2_3 139.68 57.253 544210000 115030000 151120000 109700000 71418000 33176000 27173000 94916 36504000 4668 1283 4054 28712;28713;28714;28715;28716;28717;28718;28719 18699;18700;18701;18702;18703;18704;18705;18706;18707 18706 9 IYLYTLNDNAR Unmodified 1354.6881 0.68811492 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 52.919 53.264 2 8.0551E-13 21339 20181213_JW_Orientia_Karp_1_1 236.32 168.32 477410000 85170000 162900000 134420000 29113000 21211000 22740000 16439000 5426700 4669 85 4055 28720;28721;28722;28723;28724;28725;28726;28727 18708;18709;18710;18711;18712;18713 18708 6 IYLYTLNDNAR Deamidation (NQ) 1355.6721 0.67213051 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 57.341 57.753 2 0.00050722 23609 20181213_JW_Orientia_Karp_1_3 151.22 80.817 72639000 0 36610000 25752000 10036000 0 0 241200 0 4670 85 4055 28728;28729;28730;28731;28732 18714;18715;18716;18717 18717 43 4 IYPAIDINK Unmodified 1045.5808 0.5807963 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 49.014 49.315 2 0.0040497 17309 20181213_JW_Orientia_Karp_2_3 108.74 38.744 240450000 43871000 49091000 60931000 48844000 13909000 18570000 0 5234300 4671 1333 4056 28733;28734;28735;28736;28737;28738;28739 18718;18719;18720 18720 3 IYQDAYR Unmodified 927.44503 0.4450311 863 H7BYN3;Q6LES8;E5KSX8;E5KSU5;Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 29.252 29.483 2 0.016412 7655 20181213_JW_Orientia_Karp_1_2 109.01 51.731 46783000 9504500 20039000 14610000 0 1727900 900570 0 0 4672 863 4057 28740;28741;28742;28743;28744;28745 18721;18722;18723 18722 3 IYQRPFGGMTTEFGDGAAAVR Oxidation (M) 2259.0743 0.074250936 1427 Karp_02373 yes yes 0 0 1 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 46.765 47.085 3 1.557E-11 16609 20181213_JW_Orientia_Karp_1_3 171.33 121.99 303430000 79770000 68550000 44852000 26651000 25736000 31821000 4565300 21486000 4673 1427 4058 28746;28747;28748;28749;28750;28751;28752;28753 18724;18725;18726;18727 18725 1028 3 IYQRPFGGMTTEFGDGAAAVR Unmodified 2243.0793 0.079336314 1427 Karp_02373 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 52.381 52.688 3 0.00094588 20741 20181213_JW_Orientia_Karp_1_2 138.07 100.99 200910000 60982000 50739000 53902000 9887100 13460000 7580000 4361600 0 4674 1427 4058 28754;28755;28756;28757;28758;28759;28760 18728;18729;18730;18731 18730 4 IYQWNPAISK Unmodified 1218.6397 0.63970816 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 49.022 49.323 2 2.6387E-05 18244 20181213_JW_Orientia_Karp_1_2 150.27 85.847 205650000 34393000 50156000 40277000 32911000 11765000 15790000 0 20363000 4675 1149 4059 28761;28762;28763;28764;28765;28766;28767 18732;18733;18734 18733 3 IYSALILHDDEVTVTEDK Unmodified 2060.0314 0.031366293 1860 Q6FG99 RPLP1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 55.208 55.524 3 0.0030672 22892 20181213_JW_Orientia_Karp_1_1 109.14 80.928 150790000 30769000 23479000 20548000 14095000 42895000 17533000 0 1468000 4676 1860 4060 28768;28769;28770;28771;28772;28773;28774 18735;18736;18737;18738;18739;18740 18735 6 IYSALPAIQALLK Unmodified 1399.8439 0.84388728 1185 Karp_00684 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 73.004 73.062 2 0.00065511 29496 20181213_JW_Orientia_Karp_2_2 149.33 120.37 63527000 14561000 5801600 7735700 0 4471900 5090900 24993000 872140 4677 1185 4061 28775;28776;28777;28778;28779;28780;28781;28782 18741;18742;18743;18744;18745;18746 18743 6 IYTSFIPEVHASVVSGER Unmodified 1990.016 0.015991 1392 Karp_02141 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 56.352 56.652 2;3 0.0005245 22799 20181213_JW_Orientia_Karp_1_3 122.78 77.018 960170000 24342000 319260000 374590000 73531000 85450000 82995000 0 0 4678 1392 4062 28783;28784;28785;28786;28787;28788;28789;28790;28791 18747;18748;18749;18750;18751 18748 5 IYVDDGLISLQVK Unmodified 1461.8079 0.80789571 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.904 66.097 2 0.00031409 26169 20181213_JW_Orientia_Karp_2_3 158.56 86.238 54315000 12958000 11261000 7320400 2671400 10333000 4592100 5178900 0 4679 1597 4063 28792;28793;28794;28795;28796;28797;28798 18752;18753;18754;18755;18756;18757 18756 6 IYVGNASVAQDIPK Unmodified 1473.7827 0.78274359 701 B5BUI8;P51452 DUSP3 Dual specificity protein phosphatase 3 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 50.176 50.351 2 0.0014465 18975 20181213_JW_Orientia_Karp_1_2 150.51 78.186 0 0 0 0 0 0 0 0 0 4680 701 4064 28799;28800 18758;18759 18759 2 IYVGNLPTDVR Unmodified 1245.6717 0.67173657 352 H0YIB4;S4R3G0;B4DFT9;A8K3M9;Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.808 52.109 2 0.00057666 18684 20181213_JW_Orientia_Karp_2_2 137.98 96.272 123590000 31780000 16296000 22220000 21299000 13777000 17959000 0 257050 4681 352 4065 28801;28802;28803;28804;28805;28806;28807 18760;18761;18762;18763;18764 18763 5 IYVISLAEPR Unmodified 1159.6601 0.66010926 829 D3DP78;P14868-2;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 1 57.849 58.199 2 0.0029868 24213 20181213_JW_Orientia_Karp_1_2 138.4 87.329 0 0 0 0 0 0 0 0 0 4682 829 4066 28808 18765 18765 1 KADDENLPTFTIK Unmodified 1490.7617 0.76167379 1161 Karp_00600 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 48.394 48.644 3 0.026027 17854 20181213_JW_Orientia_Karp_1_2 73.877 31.452 74235000 16873000 24522000 14537000 9524100 4007100 4772700 0 0 4683 1161 4067 28809;28810;28811;28812;28813;28814 18766;18767 18766 2 KAEAGAGSATEFQFR Unmodified 1568.7583 0.75831975 1675 P46783;Q59GE4;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 37.519 37.866 2;3 2.2653E-05 11701 20181213_JW_Orientia_Karp_1_3 169.4 130.52 276970000 68742000 80738000 102250000 7476100 0 3338800 13001000 1422400 4684 1675 4068 28815;28816;28817;28818;28819;28820;28821;28822;28823;28824;28825;28826;28827 18768;18769;18770;18771;18772;18773 18770 6 KAGDIIEVITPK Unmodified 1282.7497 0.74965254 1184 Karp_00677 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 49.533 49.834 2 1.8151E-07 19124 20181213_JW_Orientia_Karp_1_1 193.62 133.6 160440000 37260000 27772000 23902000 21379000 9126600 20526000 0 20475000 4685 1184 4069 28828;28829;28830;28831;28832;28833;28834 18774;18775;18776;18777 18774 4 KAGTDLLNFLSSFIDPK Unmodified 1864.9935 0.99346464 806 CON__P81644 yes yes 0 0 0 1 By matching By matching By MS/MS 1 1 1 75.721 75.705 3 0.039757 28400 20181213_JW_Orientia_Karp_3_1 52.045 24.615 9115700 0 0 0 0 4133000 1818600 3164200 0 + 4686 806 4070 28835;28836;28837 18778 18778 1 KALAAAGYDVEK Unmodified 1234.6558 0.65575216 1605;1606;291;1763 P16402;A1L407;P22492;Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16403;Q02539 HIST1H1D;HIST1H1T;HIST1H1E;HIST1H1C;HIST1H1A Histone H1.3;Histone H1t;Histone H1.4;Histone H1.2;Histone H1.1 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 1 30.372 30.745 2;3 0.02205 8265 20181213_JW_Orientia_Karp_1_3 109.24 42.615 45587000 18737000 9897200 13989000 279020 135990 0 1189400 1358900 4687 1605;291;1606;1763 4071 28838;28839;28840;28841;28842;28843;28844;28845;28846;28847;28848 18779;18780;18781 18781 3 KALAAGGYDVEK Unmodified 1220.6401 0.6401021 1604 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 29.199 29.399 2 0.026767 8067 20181213_JW_Orientia_Karp_1_1 105.36 54.013 14488000 4007300 8524700 1791400 0 0 164180 0 0 4688 1604 4072 28849;28850;28851;28852 18782 18782 1 KAMEKLAAQQEEDAK Unmodified 1688.8403 0.84033482 1371 Karp_02001 yes yes 0 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 22.126 22.386 3 0.007455 4952 20181213_JW_Orientia_Karp_1_1 121.92 92.56 11193000 0 5468900 3101200 1114100 706480 802740 0 0 4689 1371 4073 28853;28854;28855;28856;28857;28858 18783;18784 18783 2 KANLQIDQINTDLNLER Unmodified 1997.0542 0.054167421 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.947 53.249 3 8.8548E-05 20990 20181213_JW_Orientia_Karp_1_2 137.73 104.03 197980000 42043000 46447000 48868000 16383000 25372000 17344000 0 1521400 4690 47 4074 28859;28860;28861;28862;28863;28864;28865 18785;18786;18787;18788;18789;18790 18786 6 KANQIYQFDNIVQAMHDIENHR Unmodified 2683.2925 0.29251699 1129 Karp_00368 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 58.491 58.667 4 0.034419 24942 20181213_JW_Orientia_Karp_1_1 52.451 34.199 35513000 11632000 0 11138000 0 5481600 7261200 0 0 4691 1129 4075 28866;28867;28868;28869 18791;18792 18791 1 KAPIEVMIEMFEEEEMQLPNRIK 2 Oxidation (M);2 Deamidation (NQ) 2837.3537 0.35370476 2056 yes no 0 2 2 2 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.891 53.236 3 0.02934 19553 20181213_JW_Orientia_Karp_2_1 45.369 10.196 5190800000 784200000 1034100000 1354000000 503590000 693090000 440810000 377210000 3867400 + 4692 2056 4076 28870;28871;28872;28873;28874;28875;28876;28877 18793 18793 1250;2122 1 KAPQLTSPELMALTR Oxidation (M) 1670.9025 0.90254115 813 CON__Q3SZ57 yes yes 0 0 1 1 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 46.874 47.216 3 0.0041357 15878 20181213_JW_Orientia_Karp_2_2 92.952 53.443 29803000 0 4441100 0 6445700 4294200 10240000 0 4382300 + 4693 813 4077 28878;28879;28880;28881;28882 18794;18795;18796 18795 473 3 KASGPPVSELITK Unmodified 1325.7555 0.7554662 1605;1606;291 P16402;Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16403 HIST1H1D;HIST1H1E;HIST1H1C Histone H1.3;Histone H1.4;Histone H1.2 no no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 38.668 39.028 3 0.0009643 12268 20181213_JW_Orientia_Karp_1_3 125.84 104.18 52710000 31378000 0 15889000 1595600 0 1855900 1925300 66516 4694 1605;291;1606 4078 28883;28884;28885;28886;28887;28888 18797;18798 18798 2 KASSEGGTAAGAGLDSLHK Unmodified 1755.8751 0.87514042 301 A4D275;O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes no 0 0 0 1 By MS/MS 1 27.575 27.826 3 0.010375 6389 20181213_JW_Orientia_Karp_2_3 76.068 43.68 1189400 0 0 0 0 0 1189400 0 0 4695 301 4079 28889 18799 18799 1 KAVDMLSTFSVIELLELTK Oxidation (M) 2152.1701 0.17010838 1171 Karp_00625 yes yes 0 0 1 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 74.307 74.328 3 0.00032361 34490 20181213_JW_Orientia_Karp_1_1 112.74 80.441 97910000 54852000 0 37303000 0 3844100 772840 0 1137600 4696 1171 4080 28890;28891;28892;28893;28894 18800;18801 18800 723 2 KAVDMLSTFSVIELLELTK Unmodified 2136.1752 0.17519376 1171 Karp_00625 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 75.755 75.762 3 0.0038331 28434 20181213_JW_Orientia_Karp_3_1 109.77 66.172 109180000 22111000 13935000 33238000 1725300 18633000 8003800 11533000 0 4697 1171 4080 28895;28896;28897;28898;28899;28900;28901 18802;18803;18804;18805;18806 18806 5 KAVLFCLSEDKK Unmodified 1436.7697 0.76973606 1625 V9HWI5;P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;B4E112;E9PLJ3;E9PS23 HEL-S-15;CFL1 Cofilin-1 yes no 0 0 0 2 By MS/MS 1 35.321 35.932 3 0.039769 9765 20181213_JW_Orientia_Karp_3_2 69.846 23.956 764660 0 0 0 0 0 0 0 764660 4698 1625 4081 28902 18807 18807 0 KCETFLNK Unmodified 1038.5168 0.51681584 1449 Karp_02529 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 24.223 24.502 2 0.0073147 5972 20181213_JW_Orientia_Karp_1_1 166.68 90.94 36863000 4107400 19626000 3290800 1841100 1949700 1909900 4138500 0 4699 1449 4082 28903;28904;28905;28906;28907;28908;28909 18808;18809;18810 18808 3 KCNAHYNLQNAFNLAEK 3 Deamidation (NQ) 2036.9262 0.92618971 1499 O15020-2;O15020;A4QPE4 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 0 3 0 1 By MS/MS 1 73.507 73.557 3 0.034417 27290 20181213_JW_Orientia_Karp_3_1 50.158 15.882 13255000 0 0 0 0 0 0 13255000 0 4700 1499 4083 28910 18811 18811 1903 0 KDAEAWFNEK Unmodified 1236.5775 0.57750184 798 CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7 KRT10;KRT28 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28 yes no 0 0 0 1 By MS/MS By MS/MS By matching 1 1 1 37.392 37.743 2 6.6965E-06 10573 20181213_JW_Orientia_Karp_2_2 183.03 98.415 2875300 0 0 0 664760 2080100 130440 0 0 + 4701 798 4084 28911;28912;28913 18812;18813 18813 1 KDDEENYLDLFSHK Unmodified 1751.8002 0.80024414 465 B2R7B5;Q07666-3;Q07666;B4DDX2;Q07666-2;B4E043 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 51.846 52.116 3 1.0456E-05 20552 20181213_JW_Orientia_Karp_1_1 193.98 130.27 118350000 23076000 44253000 41096000 0 9337300 0 591940 0 4702 465 4085 28914;28915;28916;28917;28918;28919 18814;18815;18816;18817 18814 4 KDDTSFVLSPNSELFK Unmodified 1825.9098 0.90979459 1106 Karp_00284 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 59.84 60.09 3 0.030476 25366 20181213_JW_Orientia_Karp_1_2 84.62 37.582 98474000 27784000 22721000 22497000 2357500 12090000 11025000 0 0 4703 1106 4086 28920;28921;28922;28923;28924;28925 18818;18819;18820 18818 3 KDEDLFR Unmodified 921.4556 0.45559579 112 A0A024R5H0;O75531;B2R4V4 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 30.189 30.622 2 0.030887 8158 20181213_JW_Orientia_Karp_1_3 157.33 54.556 60371000 0 27548000 23795000 0 0 0 9027600 0 4704 112 4087 28926;28927;28928 18821 18821 1 KDIENQYETQITQIEHEVSSSGQEVQSSAK Unmodified 3391.6016 0.60155092 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 56.716 57.148 4 3.7033E-05 21608 20181213_JW_Orientia_Karp_2_1 77.646 60.57 91548000 0 0 6517900 30652000 0 21959000 29382000 3036700 + 4705 1653 4088 28929;28930;28931;28932;28933 18822;18823;18824 18822 3 KDLYANTVLSGGTTMYPGIADR Oxidation (M) 2358.1526 0.15256084 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q96FU6;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9UE89;P63261;B4E3A4;B4DVQ0 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.483 53.799 3 5.0732E-18 21663 20181213_JW_Orientia_Karp_1_1 185.06 140.48 319580000 99980000 41051000 92345000 40164000 21553000 24093000 0 393630 4706 1717;1743 4089 28934;28935;28936;28937;28938;28939;28940 18825;18826;18827;18828;18829 18825 1340 5 KDLYANTVLSGGTTMYPGIADR Unmodified 2342.1576 0.15764621 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q96FU6;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9UE89;P63261;B4E3A4;B4DVQ0 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 57.589 57.865 3 2.2587E-13 23733 20181213_JW_Orientia_Karp_1_3 176.88 100.82 135360000 37086000 20988000 56299000 0 13265000 4688700 0 3030900 4707 1717;1743 4089 28941;28942;28943;28944;28945;28946 18830;18831;18832;18833;18834 18832 5 KDQELVPYNIVR Unmodified 1472.7987 0.798728 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 2 48.494 48.831 2;3 9.0418E-07 16772 20181213_JW_Orientia_Karp_2_2 186.87 82.824 807090000 170730000 275400000 111710000 143860000 14474000 64950000 1535600 24441000 4708 1074 4090 28947;28948;28949;28950;28951;28952;28953;28954;28955;28956;28957;28958;28959;28960 18835;18836;18837;18838;18839;18840;18841;18842 18839 8 KDQMENIVQK Deamidation (NQ) 1232.6071 0.60708741 2034 yes no 0 1 0 1 By MS/MS 1 38.623 39.133 2 0.042987 11551 20181213_JW_Orientia_Karp_3_2 108.46 9.0191 88626 0 0 0 0 0 0 0 88626 + 4709 2034 4091 28961 18843 18843 2120 0 KDQQQQQNLNFYELSDFSNKK 5 Deamidation (NQ) 2606.166 0.16602187 1146 Karp_02433;Karp_01289;Karp_01072;Karp_00764;Karp_00498 yes no 0 5 0 2 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 77.64 77.626 3 0.035571 36247 20181213_JW_Orientia_Karp_1_3 42.226 10.26 695100000 242650000 159290000 32171000 34265000 0 89911000 135790000 1026300 4710 1146 4092 28962;28963;28964;28965;28966;28967;28968 18844 18844 1810;1811;1812 0 KDRVEDALHATR Unmodified 1409.7375 0.73752473 1296 Karp_01187 yes yes 0 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 23.306 23.618 3 0.0056317 5150 20181213_JW_Orientia_Karp_1_2 128.36 88.484 30342000 0 11096000 5762500 0 0 3753300 9730100 0 4711 1296 4093 28969;28970;28971;28972 18845;18846;18847;18848 18845 4 KDSNLIMTALNGILTEEVNIPELR Deamidation (NQ) 2683.4102 0.41023209 1294 Karp_01183 yes yes 0 1 0 1 By matching By matching By MS/MS 1 1 1 73.582 73.651 3 0.032845 29848 20181213_JW_Orientia_Karp_3_2 49.287 23.077 17092000 0 0 0 1606000 0 0 9443700 6042800 4712 1294 4094 28973;28974;28975 18849 18849 1 KDVDGAYMTK Oxidation (M) 1142.5278 0.52777445 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 1 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 18.995 19.327 2 0.00083022 3385 20181213_JW_Orientia_Karp_2_1 151.22 32.005 20425000 2624800 2021100 4969600 3840200 105630 3503100 3237700 123020 + 4713 995;996 4095 28976;28977;28978;28979;28980;28981;28982;28983 18850;18851;18852 18851 548 3 KDVDGAYMTK Unmodified 1126.5329 0.53285983 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 24.08 24.46 2 0.011411 5117 20181213_JW_Orientia_Karp_2_1 112.83 29.187 9266500 0 1615100 954240 1441600 1164600 1020800 2164400 905780 + 4714 995;996 4095 28984;28985;28986;28987;28988;28989;28990 18853 18853 1 KDVDNAYMIK Oxidation (M) 1211.5856 0.58562368 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 1 1 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 27.776 28.066 2 0.01452 6650 20181213_JW_Orientia_Karp_2_3 119.68 67.278 14043000 3717900 1838100 4168700 0 0 1392600 2926200 0 + 4715 804;1657 4096 28991;28992;28993;28994;28995 18854;18855 18854 467 2 KDVDNAYMIK Unmodified 1195.5907 0.59070906 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 32.971 33.314 2 0.037343 8433 20181213_JW_Orientia_Karp_3_2 96.665 44.878 89493000 4730400 0 4354800 0 77301000 0 1417100 1689500 + 4716 804;1657 4096 28996;28997;28998;28999;29000 18856 18856 1 KDVLETFTVK Unmodified 1178.6547 0.65468953 325 B4DPP0;A6NNI4;G8JLH6;P21926 CD9 Tetraspanin;CD9 antigen yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 45.686 45.979 2 0.0057109 16225 20181213_JW_Orientia_Karp_1_2 119.22 64.501 38599000 13282000 12498000 7491500 1141800 0 1318700 0 2866900 4717 325 4097 29001;29002;29003;29004;29005;29006 18857 18857 1 KEAEEEYRNSMPASSFQQQK Oxidation (M);3 Deamidation (NQ) 2405.0329 0.032899211 419 B8ZZ10;A8MYV2;D3DU41;Q1W6G4;Q53G47;Q9NQ29-2;Q9NQ29-3;Q9NQ29 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 0 3 1 2 By MS/MS 1 28.917 29.267 3 0.042735 7550 20181213_JW_Orientia_Karp_1_2 41.257 10.434 0 0 0 0 0 0 0 0 0 4718 419 4098 29007 18858 18858 1439;1440 1 KEASLQFVVEPSEATNR 2 Deamidation (NQ) 1905.932 0.9319866 1767 Q6PIR0;Q03188 CENPC Centromere protein C yes no 0 2 0 1 By MS/MS 1 31.316 31.926 3 0.021576 7790 20181213_JW_Orientia_Karp_3_2 70.281 13.145 0 0 0 0 0 0 0 0 0 4719 1767 4099 29008 18859 18859 1151;1970 1 KEDALLYQSK Unmodified 1193.6292 0.62920306 1691 Q5HY57;P50402 EMD Emerin yes no 0 0 0 1 By MS/MS 1 30.508 30.858 2 0.027853 8348 20181213_JW_Orientia_Karp_1_2 141.1 62.831 0 0 0 0 0 0 0 0 0 4720 1691 4100 29009 18860 18860 1 KEDLVFIFWAPESAPLK Unmodified 1989.0612 0.061150279 1625 V9HWI5;P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;Q549N0;Q9Y281-3;Q9Y281 HEL-S-15;CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 2 2 72.764 72.826 2;3 7.7421E-11 29416 20181213_JW_Orientia_Karp_3_2 180.06 129.98 1058100000 9675900 18244000 32945000 51369000 213910000 247550000 450340000 34050000 4721 1625 4101 29010;29011;29012;29013;29014;29015;29016;29017;29018;29019;29020;29021;29022 18861;18862;18863;18864;18865;18866;18867;18868;18869 18869 9 KEDLYLKPIQR Unmodified 1401.798 0.79799972 1593 P13639;Q8TA90;Q6PK56;B4DRE8 EEF2 Elongation factor 2 yes no 0 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.776 35.211 3 0.0055522 9995 20181213_JW_Orientia_Karp_2_3 123.01 89.247 48427000 0 14140000 22572000 1777200 0 1694400 6425900 1816300 4722 1593 4102 29023;29024;29025;29026;29027;29028;29029 18870;18871;18872;18873;18874;18875;18876 18874 7 KEEDGVPGIVLR Unmodified 1310.7194 0.71941505 1169 Karp_00623 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 45.287 45.47 3 0.013602 15766 20181213_JW_Orientia_Karp_1_3 80.318 31.32 234880000 110970000 70561000 53345000 0 0 0 0 0 4723 1169 4103 29030;29031;29032 18877;18878;18879 18879 3 KEEELQAALAR Unmodified 1256.6725 0.67246486 47;919 A0A024R1N1;P35579;Q86XU5;Q99529;F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH14 Myosin-9;Myosin-14 no no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 34.434 34.789 2;3 5.0818E-18 10218 20181213_JW_Orientia_Karp_1_2 237.51 110.05 388970000 84986000 137340000 125260000 9776000 9217300 0 18845000 3551600 4724 47;919 4104 29033;29034;29035;29036;29037;29038;29039;29040;29041;29042;29043;29044;29045 18880;18881;18882;18883;18884 18880 4 KEEELQGALAR Unmodified 1242.6568 0.65681479 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS 1 30.919 31.269 2 0.025899 8542 20181213_JW_Orientia_Karp_1_2 163.38 35.703 0 0 0 0 0 0 0 0 0 4725 944 4105 29046 18885 18885 1 KEESEESDDDMGFGLFD Oxidation (M) 1964.7469 0.74694752 238;1860;125 A0A024RCA7;P05387;H0YDD8;P05386-2;Q6FG99;Q6ICQ4;A0A024R608;P05386 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 no no 0 0 1 1 By MS/MS By matching By matching 1 1 1 63.408 63.524 2 0.0019593 27802 20181213_JW_Orientia_Karp_1_1 139.19 122.53 44533000 18211000 9146200 17176000 0 0 0 0 0 4726 238;1860;125 4106 29047;29048;29049 18886 18886 110 1 KEGGLGPLNIPLLADVTR Unmodified 1862.0625 0.062547262 321 A6NIW5;B4DF70;V9HW12;P32119 PRDX2;HEL-S-2a Peroxiredoxin-2 yes no 0 0 0 1 By matching By MS/MS By MS/MS 1 1 1 70.268 70.419 3 0.0042716 25341 20181213_JW_Orientia_Karp_3_1 93.115 61.52 22278000 0 0 0 0 5589200 3167800 13521000 0 4727 321 4107 29050;29051;29052 18887;18888 18888 2 KEKQIEQQK 3 Deamidation (NQ) 1160.5925 0.5924832 1659 Q53Y06;P36543-2;P36543;C9J8H1;P36543-3;Q96A05 ATP6V1E1;ATP6V1E2 V-type proton ATPase subunit E 1;V-type proton ATPase subunit E 2 yes no 0 3 0 2 By MS/MS 1 46.592 46.743 2 0.042136 15558 20181213_JW_Orientia_Karp_2_2 57.96 14.713 0 0 0 0 0 0 0 0 0 4728 1659 4108 29053 18889 18889 1949;1950;1951 1 KELEQGQAGDNVGILLR Unmodified 1838.985 0.98502522 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 47.182 47.42 3 1.5078E-10 17100 20181213_JW_Orientia_Karp_1_2 179.81 114.51 139080000 0 67471000 37501000 0 16804000 17301000 0 0 4729 1176;1244 4109 29054;29055;29056;29057 18890;18891;18892;18893 18890 4 KELQEENQRLQASLSQDQK 2 Deamidation (NQ) 2273.1135 0.11353279 827 D3DNE5;Q8IYY4-2;Q8IYY4 DZIP1L Zinc finger protein DZIP1L yes no 0 2 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 41.049 41.334 3 0.040145 13972 20181213_JW_Orientia_Karp_1_1 63.374 24.956 203140000 64568000 105710000 0 10327000 10860000 10343000 0 1333100 4730 827 4110 29058;29059;29060;29061;29062;29063 18894 18894 1664;1665;1666 0 KELSSTQQVEVNLPYITADASGPK Unmodified 2574.3177 0.31771191 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.452 56.729 3 1.4228E-07 21422 20181213_JW_Orientia_Karp_2_3 139.45 103.2 148230000 51636000 26318000 32308000 0 24808000 13051000 0 109160 4731 1074 4111 29064;29065;29066;29067;29068;29069 18895;18896;18897;18898;18899;18900 18900 6 KEQVNIELKAVPAQEVK 2 Deamidation (NQ) 1924.0517 0.051707805 934 F6M2K3;Q14686 NCOA6 Nuclear receptor coactivator 6 yes no 0 2 0 2 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 25.484 25.829 4 0.03976 5084 20181213_JW_Orientia_Karp_2_2 43.408 8.1033 57990000 970900 21621000 1365000 6607200 8932900 3087300 5205000 10201000 4732 934 4112 29070;29071;29072;29073;29074;29075;29076;29077 18901 18901 1724 1 KESDLNGAQIK 2 Deamidation (NQ) 1203.5983 0.59829686 1613 P20700;E9PBF6;Q6DC98 LMNB1 Lamin-B1 yes no 0 2 0 1 By matching By MS/MS By MS/MS 1 1 1 74.087 74.086 2 0.004508 34093 20181213_JW_Orientia_Karp_1_3 124.08 6.269 38816000 27169000 0 11647000 0 0 0 0 0 4733 1613 4113 29078;29079;29080 18902;18903 18903 1070;1930 2 KESIVDVLCK Unmodified 1189.6377 0.63765925 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 43.337 43.681 2 6.7661E-08 13596 20181213_JW_Orientia_Karp_3_2 200.71 138.13 283730000 87386000 75461000 39899000 25357000 0 12381000 37740000 5510000 4734 1068;1081;1083;1086;1151;1356 4114 29081;29082;29083;29084;29085;29086;29087 18904;18905;18906;18907;18908;18909;18910;18911 18911 8 KESYSIYVYK Unmodified 1278.6496 0.64960415 1624;1817 P23527;P33778;Q8N257;Q6DRA6;Q6DN03;Q16778;A0A024RCJ2;P06899 HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B;Histone H2B type 1-J no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.381 38.691 2 4.1234E-08 12300 20181213_JW_Orientia_Karp_1_2 237.44 179.01 565270000 128050000 177770000 195860000 0 5404300 0 49539000 8647400 4735 1624;1817 4115 29088;29089;29090;29091;29092;29093 18912;18913;18914;18915;18916;18917 18913 6 KESYSVYVYK Unmodified 1264.634 0.63395408 449 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 1 2 1 2 2 35.146 35.497 2;3 5.7769E-09 11096 20181213_JW_Orientia_Karp_1_1 209.73 129.56 1637200000 557640000 539630000 381590000 13778000 26820000 5070700 76166000 36488000 4736 449 4116 29094;29095;29096;29097;29098;29099;29100;29101;29102;29103;29104;29105;29106;29107 18918;18919;18920;18921;18922 18918 4 KEVDEQMLNVQNK Oxidation (M);3 Deamidation (NQ) 1592.724 0.72396766 602 B4DMJ5 yes yes 0 3 1 1 By MS/MS By MS/MS 1 1 42.824 42.999 2 0.039846 16062 20181213_JW_Orientia_Karp_1_1 42.336 10.302 0 0 0 0 0 0 0 0 0 4737 602 4117 29108;29109 18923;18924 18923 1534;1535 374 2 KFDQLLAEEK Unmodified 1219.6449 0.64485312 47;944;919 A0A024R1N1;P35579;P35579-2;B4E177;A1L2Z2;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;O14729;O14794;Q68D89;F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2 MYH9;MYH14;MYH10;DKFZp686D10126 Myosin-9;Myosin-10;Myosin-14 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.349 39.682 2 1.177E-11 12544 20181213_JW_Orientia_Karp_1_3 218.6 110.14 701800000 197000000 203160000 176130000 35086000 0 20670000 69754000 0 4738 47;944;919 4118 29110;29111;29112;29113;29114;29115;29116 18925;18926;18927;18928;18929;18930;18931;18932 18927 8 KFDSETSNAMSDLLGGGK Unmodified 1855.8622 0.86219247 1158 Karp_00578 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 52.403 52.653 3 0.023623 20990 20181213_JW_Orientia_Karp_1_1 62.589 33.957 32018000 10792000 6198500 8354000 2632700 4040700 0 0 0 4739 1158 4119 29117;29118;29119;29120;29121 18933 18933 1 KFDSLNDTIPIVLESSK Unmodified 1905.0095 0.0095086389 1385 Karp_02124 yes yes 0 0 0 1 By MS/MS By matching By MS/MS 1 1 1 62.657 62.791 3 0.039874 24525 20181213_JW_Orientia_Karp_2_3 51.971 26.105 26453000 14350000 0 0 0 7737100 4366200 0 0 4740 1385 4120 29122;29123;29124 18934;18935 18935 2 KFEEFQTDMAAHEER Oxidation (M) 1882.8156 0.81557663 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 1 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 30.554 30.956 3 1.9904E-05 8754 20181213_JW_Orientia_Karp_1_1 155.57 100.28 16385000 7940100 1307800 3640400 0 0 0 1517100 1980100 4741 316 4121 29125;29126;29127;29128;29129 18936;18937;18938;18939 18936 217 4 KFEEFQTDMAAHEER Unmodified 1866.8207 0.82066201 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 36.745 37.089 3 0.00013012 11232 20181213_JW_Orientia_Karp_1_3 145.86 110.2 42913000 13378000 14008000 10988000 0 0 619620 3082900 837400 4742 316 4121 29130;29131;29132;29133;29134;29135 18940;18941 18941 2 KFEVEVIDDHIK Unmodified 1470.7718 0.77184455 1064 Karp_00011 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 43.657 43.924 3 0.00017342 15005 20181213_JW_Orientia_Karp_1_2 154.23 94.153 116020000 26193000 35317000 34222000 0 6253000 8529000 5508800 0 4743 1064 4122 29136;29137;29138;29139;29140;29141;29142 18942;18943;18944;18945;18946;18947;18948 18943 7 KFGPVVAPK Unmodified 941.56984 0.56983769 1812 Q15942;H0Y2Y8;C9IZ41 ZYX Zyxin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 1 1 31.046 31.368 2 0.012687 8678 20181213_JW_Orientia_Karp_1_2 114.78 59.342 75809000 19752000 15363000 13355000 17731000 9455500 0 0 152900 4744 1812 4123 29143;29144;29145;29146;29147;29148;29149;29150 18949;18950;18951;18952;18953 18950 5 KFGSILSQYGIQK Unmodified 1467.8086 0.80856441 1144 Karp_00459 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 47.898 48.203 2;3 0.00020039 16315 20181213_JW_Orientia_Karp_3_1 172.11 110.52 665390000 81717000 186200000 132520000 101440000 31287000 108130000 3842300 20248000 4745 1144 4124 29151;29152;29153;29154;29155;29156;29157;29158;29159;29160;29161;29162;29163;29164 18954;18955;18956;18957;18958;18959;18960;18961 18961 7 KFGYSNNHQTPR Unmodified 1447.6957 0.69565991 1230 Karp_00897 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 19.428 19.661 3 0.017328 3596 20181213_JW_Orientia_Karp_1_3 93.766 49.968 37231000 11401000 7670700 8094100 3390900 0 3072800 3601000 0 4746 1230 4125 29165;29166;29167;29168;29169;29170 18962;18963;18964;18965 18964 4 KFGYSNNHQTPR Deamidation (NQ) 1448.6797 0.6796755 1230 Karp_00897 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 2 2 1 3 22.28 22.638 3 0.00013 4879 20181213_JW_Orientia_Karp_3_1 159.44 90.229 76161000 13365000 19922000 12468000 7599000 7987000 4920300 5410400 4489400 4747 1230 4125 29171;29172;29173;29174;29175;29176;29177;29178;29179;29180;29181;29182;29183;29184;29185;29186;29187;29188 18966;18967;18968;18969;18970;18971;18972;18973;18974;18975 18973 632;633 10 KFGYSNNHQTPR 2 Deamidation (NQ) 1449.6637 0.66369108 1230 Karp_00897 yes yes 0 2 0 1 By MS/MS By matching By matching 1 1 1 24.534 24.985 3 0.018645 5410 20181213_JW_Orientia_Karp_2_1 67.879 33.919 2311600 0 0 0 1089700 653090 0 568850 0 4748 1230 4125 29189;29190;29191 18976 18976 632;633 1 KFLPNLQNVSLFSDSLK Unmodified 1949.0622 0.062212911 1165 Karp_00617 yes yes 0 0 0 1 By MS/MS 1 64.942 64.942 3 0.012714 28736 20181213_JW_Orientia_Karp_1_1 78.078 46.845 4109000 4109000 0 0 0 0 0 0 0 4749 1165 4126 29192 18977 18977 1 KFNAALQDTNNNVVVEK Deamidation (NQ) 1903.964 0.96395543 1256 Karp_00936 yes yes 0 1 0 1 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 41.036 41.307 3 0.00015614 13429 20181213_JW_Orientia_Karp_1_3 133.9 64.466 102780000 21941000 35538000 16192000 0 10089000 0 19017000 0 4750 1256 4127 29193;29194;29195;29196;29197 18978;18979;18980 18979 665;666;667;668 3 KFNAALQDTNNNVVVEK Unmodified 1902.9799 0.97993984 1256 Karp_00936 yes yes 0 0 0 1 By MS/MS 1 39.162 39.813 3 0.012737 12290 20181213_JW_Orientia_Karp_3_1 97.214 50.896 0 0 0 0 0 0 0 0 0 4751 1256 4127 29198 18981 18981 1 KFNALFAQGNYSEAAK Unmodified 1757.8737 0.87368386 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 44.065 44.336 3 0.0001175 15088 20181213_JW_Orientia_Karp_1_3 143.05 90.054 95782000 29943000 31478000 20711000 0 4721600 0 8927700 0 4752 1757 4128 29199;29200;29201;29202;29203 18982;18983;18984;18985;18986 18984 5 KFNCEINQVPTTVLIEK Unmodified 2032.0663 0.066312011 1178 Karp_00644 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 52.489 52.834 3 0.016166 19293 20181213_JW_Orientia_Karp_2_3 97.129 41.15 373740000 86682000 91899000 75109000 37249000 41495000 37138000 3734900 434080 4753 1178 4129 29204;29205;29206;29207;29208;29209;29210;29211 18987;18988;18989 18989 3 KFPVFNPATEEELCQVEEGDK Unmodified 2465.1421 0.14205573 1538 V9HW83;V9HVX6;P00352;B4DXX3;Q5SYQ9;Q5SYQ8;Q5SYQ7;Q59EJ0 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 57.852 58.134 3 1.278E-06 24137 20181213_JW_Orientia_Karp_1_2 148.19 110.96 94344000 30883000 26728000 23121000 0 0 6139100 0 7472500 4754 1538 4130 29212;29213;29214;29215;29216 18990;18991;18992;18993;18994;18995 18991 6 KFPVTISTDGIDNALSAVNILGLINDK Unmodified 2827.5331 0.53312441 1332 Karp_01370 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 75.562 75.593 3 0.00064204 28329 20181213_JW_Orientia_Karp_3_1 74.748 56.748 20188000 0 0 6862400 3544100 0 2661200 5891000 1229400 4755 1332 4131 29217;29218;29219;29220;29221 18996 18996 1 KFQNQQNNKVISK 5 Deamidation (NQ) 1579.773 0.77296676 962 Q5JSC4;H0UI08;Q17R60 IMPG1 Interphotoreceptor matrix proteoglycan 1 yes no 0 5 0 2 By MS/MS 1 36.173 36.424 2 0.036767 9904 20181213_JW_Orientia_Karp_2_2 56.783 18.029 0 0 0 0 0 0 0 0 0 4756 962 4132 29222 18997 18997 1737;1738 1 KFQQTAAYR Unmodified 1111.5774 0.57744226 1980 Q9NQ48;H7C488;Q9NQ48-2 LZTFL1 Leucine zipper transcription factor-like protein 1 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 21.093 21.372 2 0.0070379 4170 20181213_JW_Orientia_Karp_1_3 123.98 40.2 3490000 502820 616990 590100 798440 332810 316430 332450 0 4757 1980 4133 29223;29224;29225;29226;29227;29228;29229 18998 18998 1 KGAISGLFVPVLCGSAFK Unmodified 1850.0124 0.012425947 1094 Karp_00243 yes yes 0 0 0 1 By MS/MS By matching By matching By MS/MS 1 1 1 1 65.534 65.699 3 0.020501 29309 20181213_JW_Orientia_Karp_1_1 65.905 29.883 17477000 11139000 0 2848700 0 0 2944400 0 545160 4758 1094 4134 29230;29231;29232;29233 18999;19000 18999 2 KGCTWGPNSIQMKDR Oxidation (M);Deamidation (NQ) 1793.8189 0.81888787 1852 X6R610;Q5TCX8-3;Q5TCX8 KIAA1804;MLK4 Mitogen-activated protein kinase kinase kinase MLK4 yes no 0 1 1 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 58.043 58.36 2 0.0030729 22176 20181213_JW_Orientia_Karp_2_1 139.43 33.458 133810000000 31168000000 33378000000 25325000000 27285000000 16606000000 0 51580000 0 4759 1852 4135 29234;29235;29236;29237;29238;29239 19001 19001 1175;2005 1468 1 KGDMLIEGSPVLQDILK Oxidation (M) 1871.0074 0.0074001489 1169 Karp_00623 yes yes 0 0 1 1 By MS/MS 1 62.939 63.449 3 0.036045 23857 20181213_JW_Orientia_Karp_3_2 52.365 29.265 0 0 0 0 0 0 0 0 0 4760 1169 4136 29240 19002 19002 1 KGDTIVYTK Unmodified 1023.5601 0.56006086 1297 Karp_01188 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 22.877 23.257 2 2.3877E-08 4658 20181213_JW_Orientia_Karp_2_1 213.85 93.229 511280000 0 98495000 67755000 101050000 68180000 42370000 96714000 36720000 4761 1297 4137 29241;29242;29243;29244;29245;29246;29247 19003;19004;19005;19006;19007;19008 19004 6 KGEITGEVHMPSGK Oxidation (M) 1484.7293 0.72932781 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 21.763 22.123 3 0.0037465 4841 20181213_JW_Orientia_Karp_1_1 95.822 55.807 29248000 6373600 12075000 4479900 0 0 840750 3448800 2030400 4762 1520 4138 29248;29249;29250;29251;29252;29253 19009;19010;19011;19012 19009 1130 4 KGEITGEVHMPSGK Unmodified 1468.7344 0.73441319 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 29.999 30.349 3 0.00043937 8055 20181213_JW_Orientia_Karp_1_3 163.33 124.37 39569000 6963800 13935000 7847900 1539100 4345200 0 4938200 0 4763 1520 4138 29254;29255;29256;29257;29258;29259 19013;19014;19015 19015 3 KGGNICPAGAVGFGVR Unmodified 1558.8038 0.80383016 1349 Karp_01525 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 2 1 41.95 42.296 2;3 0.0025359 13996 20181213_JW_Orientia_Karp_1_3 133.89 92.493 203990000 66712000 34877000 42272000 4961100 0 0 54112000 1055000 4764 1349 4139 29260;29261;29262;29263;29264;29265;29266;29267;29268;29269;29270 19016;19017;19018 19017 3 KGILELMDAIDDYIPQPTR Oxidation (M) 2203.1195 0.11946979 1176;1244 Karp_00632;Karp_00911 no no 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 68.215 68.42 3 3.7166E-05 30039 20181213_JW_Orientia_Karp_1_3 133.35 89.589 999510000 160470000 36026000 215990000 23097000 114570000 100080000 231710000 117570000 4765 1176;1244 4140 29271;29272;29273;29274;29275;29276;29277;29278;29279;29280;29281;29282;29283;29284;29285 19019;19020;19021;19022;19023;19024;19025;19026;19027;19028 19022 740 10 KGILELMDAIDDYIPQPTR Unmodified 2187.1246 0.12455517 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.902 73.918 3 0.00014304 30164 20181213_JW_Orientia_Karp_2_3 147.6 87.059 954080000 498220000 154730000 182580000 0 53712000 20526000 44308000 0 4766 1176;1244 4140 29286;29287;29288;29289;29290;29291 19029;19030;19031;19032;19033;19034 19033 6 KGPAAIQK Unmodified 811.49159 0.49158736 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 12.541 13.022 2 0.018885 2034 20181213_JW_Orientia_Karp_2_3 149.4 36.316 82758000 0 0 1318800 3799800 9531200 8863900 1042800 58201000 + 4767 1653 4141 29292;29293;29294;29295;29296;29297;29298;29299 19035;19036;19037;19038;19039;19040 19039 6 KGSFNLEDYYQQLQNINK Unmodified 2201.0753 0.075296793 1270 Karp_01078 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.666 60.986 3 1.8027E-05 22432 20181213_JW_Orientia_Karp_3_2 146.2 83.139 102140000 28426000 15046000 29918000 4577900 9707400 6681700 859430 6924700 4768 1270 4142 29300;29301;29302;29303;29304;29305;29306;29307 19041;19042;19043;19044;19045;19046 19046 6 KGTDVNVFNTILTTR Unmodified 1677.905 0.90498399 1548 Q5TZZ9;P04083;B5BU38;B4DL19 ANXA1 Annexin;Annexin A1 yes no 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 56.797 57.007 3 0.0078054 21553 20181213_JW_Orientia_Karp_2_3 87.647 57.915 23741000 8948600 1645800 4749000 0 2787500 5609700 0 0 4769 1548 4143 29308;29309;29310;29311;29312 19047;19048 19048 2 KGVNLPGAAVDLPAVSEK Unmodified 1763.9781 0.97814893 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;A0A024R609;H3BQ34;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.467 52.769 3 0.0007165 18973 20181213_JW_Orientia_Karp_2_1 111.78 86.233 149510000 29380000 24911000 29089000 24367000 22541000 19035000 0 188890 4770 1597 4144 29313;29314;29315;29316;29317;29318;29319 19049;19050;19051;19052;19053 19051 5 KHEAFESDLAAHQDR Unmodified 1752.818 0.81795989 1509;133 O43707;O43707-2;Q96BG6;B4E337;B7Z2N5;B7Z4P6;Q59FD9;B7Z4K1;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;Q86TX4;B3KUX9;B7Z2W3;H7C5W8;P35609-2;P35609 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 2 2 24.588 24.921 3;4 0.0029773 5677 20181213_JW_Orientia_Karp_1_3 135.86 91.609 190220000 17575000 63546000 18240000 15430000 14556000 7184300 38401000 15287000 4771 1509;133 4145 29320;29321;29322;29323;29324;29325;29326;29327;29328;29329;29330;29331;29332;29333;29334 19054;19055;19056;19057;19058;19059 19056 6 KHEAFETDFTVHK Unmodified 1587.7682 0.76815616 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By matching By matching By MS/MS 1 1 1 30.285 30.802 4 0.0083989 7976 20181213_JW_Orientia_Karp_3_1 81.565 43.265 5588800 0 0 0 1171700 1616900 0 2800200 0 4772 316 4146 29335;29336;29337 19060 19060 1 KHGEWHTNEWVK Unmodified 1549.7426 0.74261011 1192 Karp_00723 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 25.199 25.433 4 0.033649 6037 20181213_JW_Orientia_Karp_1_2 42.629 2.1325 15472000 1333300 8501700 956010 1876600 1662900 1141500 0 0 4773 1192 4147 29338;29339;29340;29341;29342;29343 19061;19062 19061 2 KHISQISVAEDDDESLLGHLMIVGK Oxidation (M) 2749.3956 0.39564465 1687 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 53.897 54.312 4 0.0015349 19869 20181213_JW_Orientia_Karp_2_1 72.058 54.411 67025000 0 0 0 7682400 31284000 13427000 0 14632000 4774 1687 4148 29344;29345;29346;29347 19063;19064;19065;19066 19063 1301 4 KHLEINPDHPIVETLR Unmodified 1910.0374 0.037395144 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 HSP90AB1 Heat shock protein HSP 90-beta yes no 0 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.682 39.99 4 0.0021465 12226 20181213_JW_Orientia_Karp_2_1 100.18 76.142 254070000 48425000 29215000 33350000 36563000 18316000 5482700 82719000 0 4775 251 4149 29348;29349;29350;29351;29352;29353;29354 19067;19068;19069;19070;19071 19068 5 KHLEINPDHSIIETLR Unmodified 1914.0323 0.032309766 1057 K9JA46;P07900;P07900-2;Q8TBA7;O75322;Q96HX7 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 42.658 42.849 4 0.025677 13913 20181213_JW_Orientia_Karp_2_3 53.395 29.107 50023000 9496300 20570000 11912000 0 4945600 3098700 0 0 4776 1057 4150 29355;29356;29357;29358;29359 19072;19073;19074;19075 19075 4 KHLSLTNGLPFGGTLAAGMTIAPGFR Deamidation (NQ) 2627.3894 0.38937748 1371 Karp_02001 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 2 2 1 1 3 2 1 69.869 69.996 3;4 0.0050099 24969 20181213_JW_Orientia_Karp_3_1 63.536 42.722 134660000 13138000 32538000 29168000 2660000 4923900 15474000 31746000 5010800 4777 1371 4151 29360;29361;29362;29363;29364;29365;29366;29367;29368;29369;29370;29371;29372 19076;19077;19078;19079 19079 837 4 KHLSLTNGLPFGGTLAAGMTIAPGFR Oxidation (M);Deamidation (NQ) 2643.3843 0.38429211 1371 Karp_02001 yes yes 0 1 1 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 64.439 64.589 3;4 0.00062104 28221 20181213_JW_Orientia_Karp_1_2 86.918 54.223 349040000 73955000 70570000 76269000 1312600 56184000 70747000 0 0 4778 1371 4151 29373;29374;29375;29376;29377;29378;29379;29380;29381;29382;29383 19080;19081;19082;19083 19080 837 954 4 KHLSLTNGLPFGGTLAAGMTIAPGFR Oxidation (M) 2642.4003 0.40027652 1371 Karp_02001 yes yes 0 0 1 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 61.164 61.451 4 0.020828 23586 20181213_JW_Orientia_Karp_2_2 44.541 30.669 49594000 14364000 5509600 5728300 1966400 13685000 5710700 0 2630400 4779 1371 4151 29384;29385;29386;29387;29388;29389;29390 19084 19084 954 1 KHPDASVNFSEFSK Unmodified 1591.7631 0.76307078 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;Q9NYD7;Q75MM1 HMGB1;HMG1;WUGSC:H_NH0244E06.1 High mobility group protein B1 yes no 0 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 36.452 36.809 3 0.00046169 10521 20181213_JW_Orientia_Karp_2_1 178.67 120.04 823800000 184940000 194770000 125100000 78752000 112700000 31359000 81036000 15157000 4780 264 4152 29391;29392;29393;29394;29395;29396;29397;29398 19085;19086 19085 2 KHPEVLAAPGGSAK Unmodified 1360.7463 0.7462985 1316 Karp_01272 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 23.005 23.385 3 0.038658 4999 20181213_JW_Orientia_Karp_1_3 76.01 43.386 12574000 0 3919600 1228200 1661500 1454900 490210 2231600 1587700 4781 1316 4153 29399;29400;29401;29402;29403;29404;29405 19087;19088 19087 2 KHQALQAEIAGHEPR Unmodified 1683.8805 0.88050057 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 24.821 25.201 4 0.011679 4743 20181213_JW_Orientia_Karp_3_2 72.175 46.853 15012000 1899900 4460500 0 1785900 1351600 1028900 3260200 1224700 4782 316 4154 29406;29407;29408;29409;29410;29411;29412 19089;19090;19091;19092;19093;19094 19094 6 KHQDSVCKLQQK 3 Deamidation (NQ) 1500.7242 0.72424243 338 Q5T6A0;E5RIV2;A8K1J5;G3V140;E5RFY4;Q8IYX8 CEP57L1 Centrosomal protein CEP57L1 yes no 0 3 0 2 By matching By MS/MS By matching 1 1 1 66.468 66.701 2 0.038276 26167 20181213_JW_Orientia_Karp_2_2 72.607 6.9804 20645000 0 0 13741000 0 6227900 0 675870 0 4783 338 4155 29413;29414;29415 19095 19095 1393;1394;1395 1 KHQILEQAVEDYAETVHQLSK Unmodified 2465.2551 0.25505207 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 53.468 53.618 4 0.024311 20974 20181213_JW_Orientia_Karp_1_3 47.688 19.276 18822000 8054700 0 8122600 0 0 2644500 0 0 4784 506 4156 29416;29417;29418 19096 19096 1 KIAQISTEILQR Unmodified 1398.8195 0.81946344 1234 Karp_00901 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 43.848 44.168 3 0.011263 15259 20181213_JW_Orientia_Karp_1_2 80.469 26.9 21975000 3506300 11958000 0 3891800 1618100 0 1001100 0 4785 1234 4157 29419;29420;29421;29422;29423 19097 19097 1 KIDLMIQQVDTLDSK Oxidation (M) 1761.9183 0.91825079 1266 Karp_01074 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.26 51.529 3 1.0271E-05 18251 20181213_JW_Orientia_Karp_2_1 160.63 104.33 218840000 37456000 46031000 41653000 44758000 0 48940000 0 0 4786 1266 4158 29424;29425;29426;29427;29428 19098;19099;19100;19101;19102 19101 829 5 KIDLMIQQVDTLDSK Unmodified 1745.9233 0.92333617 1266 Karp_01074 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.543 55.81 3 2.3947E-13 22249 20181213_JW_Orientia_Karp_1_3 198.38 144.18 240730000 120490000 37850000 43546000 8261900 13587000 16990000 0 0 4787 1266 4158 29429;29430;29431;29432;29433;29434 19103;19104;19105;19106;19107;19108 19105 6 KIDMPQDLVDTVTQK Oxidation (M) 1745.887 0.88695066 1459 Karp_02609 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 47.976 48.218 3 0.0071254 17373 20181213_JW_Orientia_Karp_1_3 89.136 53.477 20858000 6424500 0 4736700 0 3038500 2726100 0 3931700 4788 1459 4159 29435;29436;29437;29438;29439 19109;19110;19111;19112 19110 1078 3 KIDMPQDLVDTVTQK Unmodified 1729.892 0.89203604 1459 Karp_02609 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 55.18 55.45 3 0.010382 20425 20181213_JW_Orientia_Karp_2_2 83.292 45.698 35799000 4912400 8202000 16974000 944070 4766000 0 0 0 4789 1459 4159 29440;29441;29442;29443;29444 19113 19113 1 KIDTLHLSK Unmodified 1053.6182 0.61824444 1190 Karp_00705 yes yes 0 0 0 1 By matching By matching By MS/MS 1 1 1 26.287 26.674 3 0.023176 5299 20181213_JW_Orientia_Karp_3_2 75.652 41.48 89207000 2682700 80177000 0 0 0 0 0 6346800 4790 1190 4160 29445;29446;29447 19114 19114 1 KIEDLGAAMEEALILDNK Unmodified 1972.0187 0.018693117 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By matching 1 1 68.356 68.382 3 0.00017721 30799 20181213_JW_Orientia_Karp_1_1 127.49 85.999 11270000 9590500 0 0 0 0 1679500 0 0 4791 316 4161 29448;29449 19115 19115 1 KIEDNNTLVFIVDVK Unmodified 1745.9564 0.95635086 412 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 RPL23A 60S ribosomal protein L23a yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 60.308 60.558 3 0.0048151 23148 20181213_JW_Orientia_Karp_2_2 141.59 83.265 61172000 20109000 5891100 14287000 2180800 11426000 7278400 0 0 4792 412 4162 29450;29451;29452;29453;29454;29455 19116;19117;19118;19119;19120 19119 5 KIGQQPQQPGAPPQQDYTK Unmodified 2108.0651 0.065066458 1930 Q92945;M0QYG1;M0R0C6 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 31.609 31.935 3 0.032025 9317 20181213_JW_Orientia_Karp_1_1 86.222 46.884 32865000 9498700 5557900 10636000 1461600 4072200 0 0 1639200 4793 1930 4163 29456;29457;29458;29459;29460;29461 19121 19121 1 KIHNHFISYIK Unmodified 1398.7772 0.7772047 1160 Karp_00595 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 28.762 29.083 3 0.016166 6796 20181213_JW_Orientia_Karp_3_1 76.927 39.231 31920000 6401900 8804800 6502400 2155600 2661200 1670000 3724200 0 4794 1160 4164 29462;29463;29464;29465;29466;29467;29468 19122;19123;19124;19125;19126;19127 19127 6 KIIEGINVVANAVGITLGPK Deamidation (NQ) 2006.1776 0.17757702 1296 Karp_01187 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 3 65.779 65.993 3 1.6384E-05 24691 20181213_JW_Orientia_Karp_3_1 141.83 124.54 280280000 60715000 51605000 36749000 2270600 50328000 31346000 26553000 20714000 4795 1296 4165 29469;29470;29471;29472;29473;29474;29475;29476;29477;29478;29479;29480;29481;29482;29483;29484 19128;19129;19130;19131;19132;19133;19134;19135;19136;19137;19138;19139;19140 19138 712 13 KIIEGINVVANAVGITLGPK Unmodified 2005.1936 0.19356144 1296 Karp_01187 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 3 66.959 67.182 2;3 4.2143E-11 29682 20181213_JW_Orientia_Karp_1_2 175.19 146.55 657550000 116900000 116040000 136560000 7835200 162250000 84375000 1254200 32325000 4796 1296 4165 29485;29486;29487;29488;29489;29490;29491;29492;29493;29494;29495;29496;29497;29498;29499;29500 19141;19142;19143;19144;19145;19146;19147;19148;19149 19142 9 KIIISDESK Unmodified 1031.5863 0.58627561 1105 Karp_00283 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 25.143 25.488 2 0.0047632 5979 20181213_JW_Orientia_Karp_1_3 131.11 34.437 38276000 4681200 12011000 4951700 3588200 3050300 1149200 5347000 3497300 4797 1105 4166 29501;29502;29503;29504;29505;29506;29507;29508 19150 19150 1 KILDSVGIEADDDR Unmodified 1544.7682 0.76821573 238 A0A024RCA7;P05387 RPLP2 60S acidic ribosomal protein P2 yes no 0 0 0 1 By MS/MS By MS/MS 1 1 44.713 45.223 2 2.06E-14 14906 20181213_JW_Orientia_Karp_3_1 220.32 156.9 12212000 0 0 0 0 0 0 0 12212000 4798 238 4167 29509;29510 19151;19152 19151 2 KINEEFDNMIK Unmodified 1379.6755 0.67550132 844 D6R942;D6RC63;Q06413-6;Q06413-5 MEF2C yes no 0 0 0 1 By matching By MS/MS 1 1 65.407 65.736 2 0.0056715 25080 20181213_JW_Orientia_Karp_3_2 125.82 24.096 1738500 0 988070 0 0 0 0 0 750420 4799 844 4168 29511;29512 19153 19153 1 KINIASYR Unmodified 963.55016 0.55016488 1131 Karp_00376 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 28.87 29.186 2 0.018989 7431 20181213_JW_Orientia_Karp_1_3 145.16 71.907 56613000 15656000 14239000 13997000 4329000 0 3107900 5283900 0 4800 1131 4169 29513;29514;29515;29516;29517;29518 19154;19155;19156 19155 3 KIPNPDFFEDLEPFR Unmodified 1862.9203 0.9202997 1637 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 68.993 69.145 3 0.0024296 31367 20181213_JW_Orientia_Karp_1_1 162.64 104.55 89284000 40899000 11004000 0 0 12848000 4938400 16351000 3244200 4801 1637 4170 29519;29520;29521;29522;29523;29524 19157;19158;19159 19157 3 KIQASTMAFK Unmodified 1123.606 0.6059652 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 31.277 31.649 2 0.0012691 7970 20181213_JW_Orientia_Karp_2_1 142.36 82.72 178510000 28646000 46583000 26381000 15380000 0 6110700 24071000 31337000 4802 1662 4171 29525;29526;29527;29528;29529;29530;29531 19160;19161;19162;19163;19164;19165;19166 19163 6 KIQASTMAFK Oxidation (M) 1139.6009 0.60087982 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 1 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.157 25.538 2 0.012064 5739 20181213_JW_Orientia_Karp_3_1 123.86 64.882 262110000 20100000 64263000 0 47177000 31729000 14555000 50655000 33628000 4803 1662 4171 29532;29533;29534;29535;29536;29537;29538;29539 19167;19168;19169;19170;19171;19172 19171 1286 6 KIQQNTFTR Unmodified 1134.6146 0.61455605 1520;1615;1797 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98;O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 1 1 21.751 22.096 2 0.0011159 4477 20181213_JW_Orientia_Karp_1_3 173.39 86.559 19174000 4174700 4868700 3860500 1123100 719920 803770 2437900 1185400 4804 1615;1520;1797 4172 29540;29541;29542;29543;29544;29545;29546;29547;29548 19173;19174;19175;19176;19177 19175 5 KIQQPVLITEQQILDK Unmodified 1893.0935 0.09351304 1252 Karp_00931 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.302 52.603 3 5.219E-28 18846 20181213_JW_Orientia_Karp_2_1 229.23 200.94 407380000 115420000 119080000 68628000 37435000 36831000 29749000 0 246670 4805 1252 4173 29549;29550;29551;29552;29553;29554;29555 19178;19179;19180;19181;19182;19183 19181 6 KISSLSSSITAK Unmodified 1220.6976 0.69761697 1449 Karp_02529 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 30.507 30.976 2 0.0038326 7657 20181213_JW_Orientia_Karp_2_1 138.63 69.028 33407000 0 7812500 19508000 1260700 1582100 0 2104100 1139600 4806 1449 4174 29556;29557;29558;29559;29560;29561 19184;19185 19185 2 KITEIISSK Unmodified 1017.607 0.60701105 1380 Karp_02117 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 30.196 30.532 2 0.0082231 8271 20181213_JW_Orientia_Karp_1_2 120.27 72.313 109190000 33614000 23819000 24719000 6306100 5353700 5205200 10176000 0 4807 1380 4175 29562;29563;29564;29565;29566;29567;29568 19186;19187 19187 2 KITISDCGQL Unmodified 1133.5751 0.575059 1888 Q71V99 Peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 1 By MS/MS By matching 1 1 43.397 43.496 2 0.0016409 15149 20181213_JW_Orientia_Karp_1_1 139.43 55.435 47803000 42738000 0 5064300 0 0 0 0 0 4808 1888 4176 29569;29570 19188 19188 1 KKHPDASVNFSEFSK Unmodified 1719.858 0.8580338 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;Q9NYD7;Q75MM1 HMGB1;HMG1;WUGSC:H_NH0244E06.1 High mobility group protein B1 yes no 0 0 0 2 By MS/MS By matching By matching By MS/MS 1 1 1 1 30.805 31.189 3 0.011648 7817 20181213_JW_Orientia_Karp_2_1 116.87 40.634 60571000 0 0 0 14386000 13909000 32276000 0 0 4809 264 4177 29571;29572;29573;29574 19189;19190 19189 2 KLAVNMVPFPR Oxidation (M) 1286.7169 0.71691263 1566;1747;1550;1964;1823 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;Q3ZCM7;A0A075B736;Q5SQY0;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB8;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 0 0 1 1 By matching By MS/MS By matching By matching 1 1 1 1 44.584 44.759 3 0.040084 15587 20181213_JW_Orientia_Karp_1_2 42.802 6.5181 28992000 12452000 13674000 2774800 0 91173 0 0 0 4810 1550;1566;1747;1823;1964 4178 29575;29576;29577;29578 19191 19191 1155 1 KLDAQVQELHAK Unmodified 1378.7569 0.75686319 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 27.773 28.099 3 0.0011419 7023 20181213_JW_Orientia_Karp_1_2 150.51 98.9 83754000 24374000 11399000 36253000 3992200 0 1859100 0 5876500 4811 944 4179 29579;29580;29581;29582;29583;29584 19192 19192 1 KLDDQSEDEALELEGPLITPGSGSIYSSPGLYSK Unmodified 3594.7465 0.74648382 130 G3V3J0;A8K6S3;A0A024R687;Q96AC1-2;Q96AC1;Q96AC1-3 FERMT2;PLEKHC1 Fermitin family homolog 2 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 71.047 71.161 3 2.5115E-08 32402 20181213_JW_Orientia_Karp_1_2 105.71 79.23 27200000 10405000 0 9958800 0 0 0 5666800 1169700 4812 130 4180 29585;29586;29587;29588;29589 19193;19194 19193 2 KLEEEGEQFVK Unmodified 1334.6718 0.67179615 464 B2R761;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307;B4E0J3;H0YF61 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 33.962 34.295 2 0.0072945 10018 20181213_JW_Orientia_Karp_1_2 120.63 58.167 45616000 15019000 7177100 12991000 2032300 2191900 0 6204600 0 4813 464 4181 29590;29591;29592;29593;29594;29595 19195;19196 19195 2 KLEELEQLK Unmodified 1128.639 0.63903946 1069 Karp_00038 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 36.94 37.224 2 0.0034172 10958 20181213_JW_Orientia_Karp_3_1 157.34 35.169 280440000 97774000 75409000 39134000 0 15139000 22836000 30147000 0 4814 1069 4182 29596;29597;29598;29599;29600;29601 19197;19198;19199 19199 3 KLEELEQLKR Unmodified 1284.7402 0.74015049 1069 Karp_00038 yes yes 0 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 1 2 2 31.766 32.118 2;3 0.00074207 7780 20181213_JW_Orientia_Karp_3_2 166.86 88.375 433820000 136470000 82604000 100120000 916980 19825000 665880 60818000 32399000 4815 1069 4183 29602;29603;29604;29605;29606;29607;29608;29609;29610;29611;29612;29613;29614;29615 19200;19201;19202;19203;19204 19204 4 KLENFALANELEQK Unmodified 1645.8675 0.86753585 1085 Karp_00200 yes yes 0 0 0 1 By MS/MS 1 49.441 49.592 3 0.028422 17293 20181213_JW_Orientia_Karp_2_2 83.869 33.845 3478400 0 0 0 0 3478400 0 0 0 4816 1085 4184 29616 19205 19205 1 KLEQYQAMYNIPK Oxidation (M) 1640.8232 0.82322819 1342 Karp_01516 yes yes 0 0 1 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 39.087 39.357 3 9.6387E-08 12496 20181213_JW_Orientia_Karp_1_2 184.87 131.84 105510000 46897000 17938000 18983000 0 8311900 0 13376000 0 4817 1342 4185 29617;29618;29619;29620;29621 19206;19207 19206 907 2 KLEQYQAMYNIPK Unmodified 1624.8283 0.82831357 1342 Karp_01516 yes yes 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 43.787 44.125 3 0.037593 15219 20181213_JW_Orientia_Karp_1_2 84.892 50.391 49992000 0 20921000 24802000 0 1370300 0 2897400 0 4818 1342 4185 29622;29623;29624;29625 19208 19208 1 KLEVNEAELLR Unmodified 1312.7351 0.73506511 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5 PTRF Polymerase I and transcript release factor yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 1 1 1 44.481 44.776 2;3 5.9578E-05 14679 20181213_JW_Orientia_Karp_3_1 199.03 126.15 618250000 199470000 319730000 44158000 8605300 10743000 0 25879000 9670700 4819 1868 4186 29626;29627;29628;29629;29630;29631;29632;29633;29634;29635;29636 19209;19210;19211;19212;19213;19214;19215;19216 19215 8 KLFIGGLSFETTEESLR Unmodified 1926.0098 0.0098429899 191 A0A024RA27;A0A024RA61;P22626-2;P22626;I6L957 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By matching By MS/MS 1 1 61.104 61.455 3 0.019552 23641 20181213_JW_Orientia_Karp_2_2 69.148 19.553 5240800 0 0 0 707850 4532900 0 0 0 4820 191 4187 29637;29638 19217 19217 1 KLFPDTQVVIGPVIK Unmodified 1652.9865 0.98652877 1376 Karp_02113 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 60.417 60.627 3 0.012483 23187 20181213_JW_Orientia_Karp_2_2 92.039 69.048 21795000 5132700 4244800 5245000 0 4025500 3147100 0 0 4821 1376 4188 29639;29640;29641;29642;29643 19218;19219;19220 19220 2 KLFSIENVK Unmodified 1076.623 0.62299547 1200 Karp_00819 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.258 40.66 2 0.022965 12514 20181213_JW_Orientia_Karp_2_1 104.01 41.906 40713000 0 14128000 10264000 3186800 0 2837400 8884800 1412300 4822 1200 4189 29644;29645;29646;29647;29648;29649 19221 19221 1 KLGEFAPTR Unmodified 1017.5607 0.56072956 1238 Karp_00905 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 31.114 31.444 2 0.0036424 8656 20181213_JW_Orientia_Karp_1_2 140.83 93.768 206460000 2999500 79314000 64657000 27217000 20712000 8772500 0 2786500 4823 1238 4190 29650;29651;29652;29653;29654;29655;29656 19222 19222 1 KLGEMWNNTAADDK Oxidation (M);Deamidation (NQ) 1608.709 0.7089863 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0;D3DQY9 HMGB1;HMGB1P1;hCG_1991922 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 1 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 1 1 33.58 33.948 3 0.0016472 8775 20181213_JW_Orientia_Karp_2_2 116.79 40.475 44794000 7660400 0 5925100 12390000 10185000 3716900 4069300 847470 4824 264 4191 29657;29658;29659;29660;29661;29662;29663;29664;29665;29666 19223;19224;19225;19226 19224 98;99 186 3 KLGEMWNNTAADDK Oxidation (M) 1607.725 0.72497071 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0;D3DQY9 HMGB1;HMGB1P1;hCG_1991922 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 1 1 By matching By MS/MS By matching 1 1 1 30.874 31.391 3 0.027225 7465 20181213_JW_Orientia_Karp_2_2 54.402 20.606 17833000 0 0 0 11299000 4931300 0 1601900 0 4825 264 4191 29667;29668;29669 19227 19227 186 1 KLGEMWSEQSAK Oxidation (M) 1408.6657 0.66566492 1632 Q5U071;P26583 HMGB2 High mobility group protein B2 yes no 0 0 1 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 28.616 28.958 3 0.024097 6434 20181213_JW_Orientia_Karp_2_2 60.157 12.166 11909000 1826500 1810200 0 1879400 4013500 1426100 953710 0 4826 1632 4192 29670;29671;29672;29673;29674;29675 19228 19228 1258 1 KLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR Unmodified 4050.1022 0.10218683 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 2 2 1 2 61.203 61.551 4;5 1.4219E-09 23535 20181213_JW_Orientia_Karp_2_2 103.04 93.187 1471100000 89919000 526220000 0 132230000 404100000 176700000 4891400 137080000 4827 1571 4193 29676;29677;29678;29679;29680;29681;29682;29683;29684;29685;29686;29687 19229;19230;19231;19232;19233;19234;19235 19234 7 KLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR Deamidation (NQ) 4051.0862 0.086202416 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 1 0 2 By MS/MS 1 60.68 61.231 5 0.00043092 21327 20181213_JW_Orientia_Karp_3_1 62.495 48.954 38927000 0 0 0 0 0 0 38927000 0 4828 1571 4193 29688 19236 19236 1920 1 KLIELQAGKK Unmodified 1126.7074 0.7073938 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314;A2VCQ4;K7EPW7 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 24.399 24.744 3 0.031644 4545 20181213_JW_Orientia_Karp_3_2 89.679 11.415 11882000 996800 0 1469300 1638100 3683500 960320 1495900 1638400 4829 588 4194 29689;29690;29691;29692;29693;29694;29695 19237 19237 1 KLLEGEESR Unmodified 1059.556 0.55603812 1571;811 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;H7C5W5;B3KWQ6;P41219;P41219-2;Q7L4M3;CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q96GE1;CON__Q9DCV7 HEL113;VIM;tmp_locus_29;DES;PRPH;KRT7 Vimentin;Desmin;Peripherin;Keratin, type II cytoskeletal 7 no no 0 0 0 1 By MS/MS By matching By matching 1 1 1 21.757 22.144 2 0.016239 4971 20181213_JW_Orientia_Karp_1_1 111.06 58.275 12424000 9752000 0 0 0 0 1490700 0 1181000 + 4830 1571;811 4195 29696;29697;29698 19238 19238 1 KLLSAEEDDLNLFHK Unmodified 1770.9152 0.91521432 1431 Karp_02388 yes yes 0 0 0 1 By MS/MS By matching 1 1 49.036 49.416 3 0.023046 17233 20181213_JW_Orientia_Karp_2_2 66.809 34.332 11492000 0 0 0 0 6205600 0 0 5286300 4831 1431 4196 29699;29700 19239 19239 1 KLNCQVIGASVDSHFCHLAWVNTPK Unmodified 2880.4163 0.41633729 1773 Q06830;B2R4P2 PRDX1 Peroxiredoxin-1 yes no 0 0 0 1 By matching By matching By MS/MS 1 1 1 51.287 51.607 4 0.016805 17572 20181213_JW_Orientia_Karp_3_2 48.255 22.25 16458000 9139800 5712000 0 0 0 0 0 1606200 4832 1773 4197 29701;29702;29703 19240 19240 1 KLNLITGLIR Unmodified 1139.739 0.73902828 1237 Karp_00904 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 51.986 52.288 2 2.0917E-05 20397 20181213_JW_Orientia_Karp_1_2 172.98 87.119 113730000 39364000 25221000 16872000 12347000 10988000 8507500 0 432540 4833 1237 4198 29704;29705;29706;29707;29708;29709;29710 19241;19242;19243 19242 3 KLNVENDLTFQEALK Unmodified 1760.9309 0.93086439 1375 Karp_02111 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 1 1 2 51.305 51.726 2;3 2.0067E-94 17836 20181213_JW_Orientia_Karp_3_1 314.29 216.48 2889500000 498040000 513890000 0 1117600000 239700000 428040000 75839000 16400000 4834 1375 4199 29711;29712;29713;29714;29715;29716;29717;29718;29719;29720;29721 19244;19245;19246;19247;19248;19249;19250;19251 19250 7 KLNVENDLTFQEALK Deamidation (NQ) 1761.9149 0.91487997 1375 Karp_02111 yes yes 0 1 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 3 4 4 53.871 54.148 3 0.012873 19398 20181213_JW_Orientia_Karp_2_2 83.856 42.842 1111100000 188600000 315720000 209220000 80046000 132470000 185010000 0 0 4835 1375 4199 29722;29723;29724;29725;29726;29727;29728;29729;29730;29731;29732;29733;29734;29735;29736;29737;29738;29739;29740;29741 19252;19253;19254;19255;19256;19257 19255 862;863 6 KLQEQLEK Unmodified 1014.571 0.5709599 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 20.833 21.116 2 0.037522 4144 20181213_JW_Orientia_Karp_1_3 109.48 13.663 4864800 1135500 1770400 1113000 301000 163810 0 381140 0 4836 279 4200 29742;29743;29744;29745;29746;29747 19258 19258 1 KLQQENLK 3 Deamidation (NQ) 1002.5233 0.523341 318 A6NHQ2;R4GMW7 FBLL1 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 yes no 0 3 0 1 By MS/MS 2 31.816 32.426 2 0.016177 8000 20181213_JW_Orientia_Karp_3_2 111.65 16.296 0 0 0 0 0 0 0 0 0 4837 318 4201 29748;29749 19259;19260 19259 122;1379;1380 2 KLQSMLQTER 2 Deamidation (NQ) 1234.6227 0.62273747 855 D6W5H5;Q8TCU4-2;Q8TCU4 ALMS1 Alstrom syndrome protein 1 yes no 0 2 0 1 By MS/MS 1 35.549 36.159 2 0.014651 9898 20181213_JW_Orientia_Karp_3_2 91.087 19.395 0 0 0 0 0 0 0 0 0 4838 855 4202 29750 19261 19261 1682;1683 1 KLTAVCLVVNSPGGSPVQSELIASR Unmodified 2581.3898 0.38977142 1160 Karp_00595 yes yes 0 0 0 1 By MS/MS By matching By matching 1 1 1 59.088 59.238 3 0.0014888 25308 20181213_JW_Orientia_Karp_1_1 78.653 56.521 19197000 8041900 0 6681600 0 4473300 0 0 0 4839 1160 4203 29751;29752;29753 19262 19262 1 KLTEFENLTIAK Unmodified 1405.7817 0.78168095 1355 Karp_01675 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 47.614 47.874 3 0.0029251 16515 20181213_JW_Orientia_Karp_2_3 103.97 53.025 38676000 14519000 12529000 0 3733600 4345800 3547500 0 0 4840 1355 4204 29754;29755;29756;29757;29758 19263;19264;19265 19265 2 KLTEHFIGTLGYTIK Unmodified 1719.956 0.95595693 1444 Karp_02422 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 47.639 47.971 3 0.007533 16381 20181213_JW_Orientia_Karp_2_1 88.108 21.781 53906000 7648800 15815000 0 9282800 5394400 0 0 15765000 4841 1444 4205 29759;29760;29761;29762;29763 19266 19266 1 KLTELDNFIGVK Unmodified 1375.7711 0.77111627 1447 Karp_02466 yes yes 0 0 0 1 By MS/MS 1 53.305 53.504 3 0.036707 20887 20181213_JW_Orientia_Karp_1_3 101.56 43.309 0 0 0 0 0 0 0 0 0 4842 1447 4206 29764 19267 19267 1 KLTLGMDYMFQVK 2 Oxidation (M);Deamidation (NQ) 1605.7783 0.77825184 940 F8VW52;F8W122;F8VXI2 PTPRQ yes no 0 1 2 1 By MS/MS By matching By matching 1 1 1 76.654 76.67 2 0.041557 36009 20181213_JW_Orientia_Karp_1_1 48.981 9.3587 15973000 10486000 0 4639400 847750 0 0 0 0 4843 940 4207 29765;29766;29767 19268 19268 1725 1 KLTLVPTVGVR Unmodified 1181.7496 0.74959297 1193 Karp_00798 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 46.194 46.466 2 0.0023954 14682 20181213_JW_Orientia_Karp_3_2 140.17 63.491 152880000 28851000 46236000 27783000 15893000 4844800 10107000 0 19169000 4844 1193 4208 29768;29769;29770;29771;29772;29773;29774 19269;19270;19271;19272;19273 19273 5 KLTPITYPQGLAMAK Oxidation (M) 1646.9066 0.90656389 302 A4D2P2;A4D2P1;A4D2P0;P63000;P63000-2;A0A024R9T5 RAC1;hCG_20693 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 45.884 46.151 3 0.0073725 15443 20181213_JW_Orientia_Karp_2_1 91.307 67.373 29438000 0 14298000 13420000 0 0 1720600 0 0 4845 302 4209 29775;29776;29777;29778 19274;19275;19276;19277 19276 211 4 KLVESLPQEIK Unmodified 1282.7497 0.74965254 1702 P52815;Q96Q74;B4DLN1 MRPL12;MRPL7/L12 39S ribosomal protein L12, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 40.534 40.845 2 0.0031386 12345 20181213_JW_Orientia_Karp_2_2 133.91 64.284 96150000 27846000 19311000 20891000 0 4082900 0 19264000 4754000 4846 1702 4210 29779;29780;29781;29782;29783;29784 19278;19279;19280;19281;19282 19281 4 KLVWVPSDK Unmodified 1070.6124 0.61243078 47 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 40.128 40.428 2 0.0035682 13081 20181213_JW_Orientia_Karp_1_2 145.72 88.442 287490000 69905000 81494000 76186000 16393000 405430 0 43105000 0 4847 47 4211 29785;29786;29787;29788;29789;29790 19283;19284;19285;19286;19287 19284 5 KLVYTGELSQPK Unmodified 1361.7555 0.7554662 1385 Karp_02124 yes yes 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 35.984 36.284 2 0.035417 10897 20181213_JW_Orientia_Karp_1_3 101.39 66.861 23894000 8020200 6956100 4627800 0 0 0 4290100 0 4848 1385 4212 29791;29792;29793;29794 19288 19288 1 KLYSSTISSDTPEK Unmodified 1554.7777 0.77771779 1166 Karp_00620 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 31.296 31.592 2;3 1.4667E-25 8608 20181213_JW_Orientia_Karp_1_3 240.18 129.64 152170000 39206000 65054000 31008000 0 1310500 2700000 12895000 0 4849 1166 4213 29795;29796;29797;29798;29799;29800;29801;29802;29803;29804;29805;29806 19289;19290;19291;19292;19293 19290 5 KMDLCNDYLR Oxidation (M) 1342.601 0.60095617 1126 Karp_00329 yes yes 0 0 1 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.731 35.074 3 0.0032719 10025 20181213_JW_Orientia_Karp_3_1 93.258 56.954 40358000 14516000 7307000 8326300 0 3862700 0 3887900 2458000 4850 1126 4214 29807;29808;29809;29810;29811;29812;29813 19294;19295;19296;19297;19298 19297 657 5 KMDLCNDYLR Unmodified 1326.606 0.60604155 1126 Karp_00329 yes yes 0 0 0 1 By matching By matching By MS/MS 1 1 1 41.282 41.498 3 0.028901 12977 20181213_JW_Orientia_Karp_2_1 70.728 18.887 11858000 8518900 0 2623900 715170 0 0 0 0 4851 1126 4214 29814;29815;29816 19299 19299 0 KMEYGFDYILPSPFDPR Oxidation (M) 2089.9819 0.98191368 1336 Karp_01409 yes yes 0 0 1 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.01 69.175 3 0.015391 31322 20181213_JW_Orientia_Karp_1_1 66.436 30.045 45014000 8856700 2697200 0 912010 11352000 4788800 11761000 4644900 4852 1336 4215 29817;29818;29819;29820;29821;29822;29823 19300;19301;19302;19303;19304 19300 897 5 KMNGALQVLDADLK Oxidation (M);Deamidation (NQ) 1531.7916 0.79159371 1456 Karp_02593 yes yes 0 1 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 4 4 4 1 1 51.686 51.966 2;3 0.00034086 19121 20181213_JW_Orientia_Karp_1_3 142.39 76.698 541070000 78909000 92699000 87393000 127010000 64367000 70402000 17536000 2761800 4853 1456 4216 29824;29825;29826;29827;29828;29829;29830;29831;29832;29833;29834;29835;29836;29837;29838;29839;29840;29841;29842;29843;29844;29845;29846;29847;29848 19305;19306;19307;19308;19309;19310;19311;19312;19313;19314;19315;19316;19317 19309 986;1881 1069 13 KMNGALQVLDADLK Deamidation (NQ) 1515.7967 0.79667909 1456 Karp_02593 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 55.015 55.225 3 0.0033609 22708 20181213_JW_Orientia_Karp_1_1 116.19 41.577 88934000 20252000 18185000 32410000 0 10928000 7159500 0 0 4854 1456 4216 29849;29850;29851;29852;29853;29854 19318;19319;19320;19321 19318 986;1881 4 KMQQNIQELEEQLEEEESAR Unmodified 2460.1438 0.14384664 47 A0A024R1N1;P35579;Q86XU5;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 55.575 56.003 3 0.0067712 22490 20181213_JW_Orientia_Karp_1_3 114.99 81.279 35871000 0 0 23161000 0 8010600 0 4487700 212270 4855 47 4217 29855;29856;29857;29858 19322 19322 1 KMVMYLNMLR 2 Oxidation (M);Deamidation (NQ) 1330.6447 0.64473524 1945 Q96L92-4;Q96L92-2;Q96L92-3;Q96L92 SNX27 Sorting nexin-27 yes no 0 1 2 1 By MS/MS 1 60.578 60.829 2 0.015926 23255 20181213_JW_Orientia_Karp_2_2 72.485 39.644 0 0 0 0 0 0 0 0 0 4856 1945 4218 29859 19323 19323 1208 1510;1511 1 KNAPCIVFIDEIDAVGR Unmodified 1915.9826 0.98258238 1458 Karp_02603 yes yes 0 0 0 1 By matching By matching By MS/MS By MS/MS 1 1 1 1 62.741 62.979 3 0.00063699 24575 20181213_JW_Orientia_Karp_2_3 116 72.968 19661000 0 3393800 3944100 0 9253700 3069300 0 0 4857 1458 4219 29860;29861;29862;29863 19324;19325 19325 2 KNEDITITEIENSLNSVITR Deamidation (NQ) 2289.17 0.16998504 1140 Karp_00452 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 3 2 2 2 64.382 64.592 3 2.4314E-05 24626 20181213_JW_Orientia_Karp_2_2 138.04 92.82 284420000 60887000 73798000 77672000 9341600 37623000 17132000 879580 7089400 4858 1140 4220 29864;29865;29866;29867;29868;29869;29870;29871;29872;29873;29874;29875;29876;29877;29878;29879;29880;29881;29882;29883 19326;19327;19328;19329;19330;19331;19332;19333;19334;19335;19336 19332 530;531 9 KNEDITITEIENSLNSVITR Unmodified 2288.186 0.18596945 1140 Karp_00452 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 70.83 70.949 3 8.0802E-17 32419 20181213_JW_Orientia_Karp_1_1 186.6 134.62 490730000 57556000 142770000 38220000 15342000 56164000 29725000 150140000 806330 4859 1140 4220 29884;29885;29886;29887;29888;29889;29890;29891 19337;19338;19339;19340;19341;19342;19343;19344 19337 8 KNEIMVAPDK Unmodified 1143.5958 0.59579444 436 B1AKR6;Q9NP97 DYNLRB1 Dynein light chain roadblock-type 1 yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 29.924 30.106 2 0.015527 7949 20181213_JW_Orientia_Karp_1_2 108.31 50.353 4417600 1512500 1367600 1537400 0 0 0 0 0 4860 436 4221 29892;29893;29894 19345 19345 1 KNEIMVAPDK Oxidation (M) 1159.5907 0.59070906 436 B1AKR6;Q9NP97 DYNLRB1 Dynein light chain roadblock-type 1 yes no 0 0 1 1 By MS/MS 1 24.439 25.25 2 0.029857 4775 20181213_JW_Orientia_Karp_3_2 94.692 37.103 0 0 0 0 0 0 0 0 0 4861 436 4221 29895 19346 19346 1 KNGQHVASSPIPVVISQSEIGDASR Deamidation (NQ) 2576.3194 0.31944324 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;H0Y5C6 FLNA;FLJ00119 Filamin-A yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 52.719 52.901 4 0.0011815 20520 20181213_JW_Orientia_Karp_1_3 75.177 58.798 109320000 35296000 33843000 40180000 0 0 0 0 0 4862 1615 4222 29896;29897;29898 19347;19348;19349 19349 1076;1931 3 KNHEEEMNALR Oxidation (M) 1385.6358 0.63576177 790;924;807 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;CON__Q04695;CON__Q9QWL7;Q04695;Q14666;K7EPJ9;K7ESE1;F5GWP8 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 0 0 1 1 By MS/MS 1 13.638 14.089 3 0.029489 2360 20181213_JW_Orientia_Karp_3_1 54.343 22.622 341570 0 0 0 0 0 0 341570 0 + 4863 790;807;924 4223 29899 19350 19350 1 KNHKEEMSQLTGQNSGDVNVEINVAPGK Oxidation (M) 3038.4727 0.47272578 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 2 By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 37.748 38.078 4 0.036247 11452 20181213_JW_Orientia_Karp_3_1 46.862 24.744 106350000 2469800 0 10488000 24229000 14060000 15417000 23801000 15887000 + 4864 1653 4224 29900;29901;29902;29903;29904;29905;29906 19351;19352 19352 1270 2 KNHKEEMSQLTGQNSGDVNVEINVAPGK Deamidation (NQ) 3023.4618 0.46182674 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.62 43.986 4 0.00044489 14286 20181213_JW_Orientia_Karp_3_1 74.308 49.672 44341000 0 7268900 8877700 11003000 3860100 3576500 9265500 489670 + 4865 1653 4224 29907;29908;29909;29910;29911;29912;29913 19353;19354 19354 1097;1100;1941;1942 2 KNIEQANLSEIEK Unmodified 1514.794 0.79403656 1200 Karp_00819 yes yes 0 0 0 1 By MS/MS By matching By matching 1 1 1 35.868 36.117 3 0.016239 11402 20181213_JW_Orientia_Karp_1_1 106.29 56.07 28777000 18881000 0 7831200 2064500 0 0 0 0 4866 1200 4225 29914;29915;29916 19355 19355 1 KNIILEEGK Unmodified 1042.6023 0.60226003 1625 V9HWI5;P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;B4E112;E9PLJ3;E9PS23 HEL-S-15;CFL1 Cofilin-1 yes no 0 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.546 28.904 2 0.0055627 6899 20181213_JW_Orientia_Karp_3_1 128.6 43.441 52722000 8348600 5829300 13969000 6476200 3965700 4050000 5397300 4685500 4867 1625 4226 29917;29918;29919;29920;29921;29922;29923;29924 19356;19357;19358;19359 19358 4 KNITLPSVNLK Unmodified 1225.7394 0.73942221 1396 Karp_02152 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 44.286 44.652 2 0.011962 15616 20181213_JW_Orientia_Karp_1_2 115.23 49.986 23238000 0 9780800 2655000 2606600 2785000 2651300 1958600 800770 4868 1396 4227 29925;29926;29927;29928;29929;29930;29931 19360;19361 19360 1 KNIYYITGDDLEALK Unmodified 1754.9091 0.90906631 1251 Karp_00928 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 53.952 54.29 2;3 0.00024558 19158 20181213_JW_Orientia_Karp_3_1 156.81 116.89 378270000 63210000 39724000 65071000 52827000 87449000 56341000 2456300 11186000 4869 1251 4228 29932;29933;29934;29935;29936;29937;29938;29939;29940;29941;29942;29943;29944;29945;29946 19362;19363;19364;19365;19366;19367;19368;19369 19368 8 KNLCEININDNMPR Oxidation (M);2 Deamidation (NQ) 1747.7869 0.78691904 144 A0A024R751;C9J1X0;A4D1P6-2;A4D1P6 HSPC049;WDR91 WD repeat-containing protein 91 yes no 0 2 1 1 By MS/MS By matching 1 1 35.786 36.387 3 0.028685 10418 20181213_JW_Orientia_Karp_2_1 53.448 11.827 3931100 0 0 0 2305100 0 0 1625900 0 4870 144 4229 29947;29948 19370 19370 57;58 0 KNPIAALNR Unmodified 995.58761 0.58761301 1273 Karp_01100 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 29.874 30.254 2 0.013996 7423 20181213_JW_Orientia_Karp_2_1 113.41 57.29 260430000 53713000 167240000 0 17671000 9437300 0 12369000 0 4871 1273 4230 29949;29950;29951;29952;29953 19371;19372 19371 2 KNSSPVKNEEEIAQVATVSSNGDR Deamidation (NQ) 2559.2413 0.2412525 1296 Karp_01187 yes yes 0 1 0 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 38.782 39.174 3 0.0092274 12044 20181213_JW_Orientia_Karp_3_1 97.974 65.177 12862000 2580000 0 0 2848100 0 1780900 4976100 677010 4872 1296 4231 29954;29955;29956;29957;29958 19373 19373 713;714;715;1835 1 KNTVPLVIGTTGLSK Unmodified 1526.9032 0.90319307 1441 Karp_02410 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 47.5 47.769 3 0.015412 17404 20181213_JW_Orientia_Karp_1_2 74.789 45.434 56417000 10938000 25720000 10836000 3874000 0 5048300 0 0 4873 1441 4232 29959;29960;29961;29962;29963 19374 19374 1 KNVDQILSNVK Unmodified 1256.7089 0.70885036 1058 Karp_00002 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 37.148 37.498 2;3 1.8816E-06 11625 20181213_JW_Orientia_Karp_1_2 203.02 105.39 70369000 21434000 19544000 14663000 10314000 0 0 4414500 0 4874 1058 4233 29964;29965;29966;29967;29968 19375;19376;19377 19376 3 KPAAATVTK Unmodified 885.52837 0.5283668 1606 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 1 By MS/MS By MS/MS 1 1 11.538 11.963 2 0.0062938 1808 20181213_JW_Orientia_Karp_1_3 126.31 21.865 1266300 0 189670 1076600 0 0 0 0 0 4875 1606 4234 29969;29970 19378;19379 19379 2 KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR Oxidation (M) 3286.6809 0.68086806 946 Q53R94;Q6IPN0;F8W914;Q9NQC3-2;Q9NQC3-5;Q9NQC3 RTN4 Reticulon;Reticulon-4 yes no 0 0 1 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 66.989 67.266 3 0.00027771 29595 20181213_JW_Orientia_Karp_1_3 66.902 49.185 35191000 0 9711800 14394000 3096600 0 0 0 7989300 4876 946 4235 29971;29972;29973;29974 19380;19381;19382;19383;19384 19382 536 5 KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR Unmodified 3270.686 0.68595344 946 Q53R94;Q6IPN0;F8W914;Q9NQC3-2;Q9NQC3-5;Q9NQC3 RTN4 Reticulon;Reticulon-4 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 71.373 71.482 3 0.00075198 26051 20181213_JW_Orientia_Karp_3_1 61.099 33.461 149560000 32930000 30051000 72404000 3044500 0 0 11126000 0 4877 946 4235 29975;29976;29977;29978;29979 19385;19386;19387;19388 19388 4 KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR Deamidation (NQ) 3271.67 0.66996902 946 Q53R94;Q6IPN0;F8W914;Q9NQC3-2;Q9NQC3-5;Q9NQC3 RTN4 Reticulon;Reticulon-4 yes no 0 1 0 1 By matching By MS/MS By matching 1 1 1 71.672 71.772 3 0.010919 32714 20181213_JW_Orientia_Karp_1_2 50.88 27.657 34810000 19406000 7985100 0 0 0 0 7418700 0 4878 946 4235 29980;29981;29982 19389 19389 330 1 KPATSYVR Unmodified 920.50797 0.50796571 981 H0YKD8;P46779;P46779-2;P46779-3 RPL28 60S ribosomal protein L28 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 17.79 18.02 2 0.036336 3112 20181213_JW_Orientia_Karp_1_3 110.31 47.592 9053700 2685200 3429700 2133100 261290 0 0 544440 0 4879 981 4236 29983;29984;29985;29986;29987 19390 19390 1 KPDIDITGPK Unmodified 1082.5972 0.59717465 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 34.219 34.541 2 0.027361 9821 20181213_JW_Orientia_Karp_3_1 100.69 46.53 81337000 36383000 25593000 8631700 3375100 2374900 1408900 3570400 0 4880 1782 4237 29988;29989;29990;29991;29992;29993;29994 19391 19391 1 KPEDWDEEMDGEWEPPVIQNPEYK Oxidation (M) 2975.2807 0.28073406 1636 Q53G71;V9HW88;P27797;K7EJB9;B4E2Y9;K7EL50 HEL-S-99n;CALR Calreticulin yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.786 60.016 3 3.8786E-06 22945 20181213_JW_Orientia_Karp_2_2 124.76 100.97 65296000 13512000 0 17070000 8369200 16397000 9947900 0 0 4881 1636 4238 29995;29996;29997;29998;29999 19392;19393;19394;19395;19396 19395 1260 5 KPEDWDEEMDGEWEPPVIQNPEYK Oxidation (M);Deamidation (NQ) 2976.2647 0.26474964 1636 Q53G71;V9HW88;P27797;K7EJB9;B4E2Y9;K7EL50 HEL-S-99n;CALR Calreticulin yes no 0 1 1 1 By MS/MS 1 59.518 59.868 3 0.0016376 25251 20181213_JW_Orientia_Karp_1_2 91.337 57.661 7564700 0 7564700 0 0 0 0 0 0 4882 1636 4238 30000 19397;19398 19397 1936 1260 2 KPEDWDERPK Unmodified 1298.6255 0.62551466 1637 P27824;P27824-2;P27824-3;Q16094;D6RGY2;Q6ZP56 CANX Calnexin yes no 0 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 22.331 22.661 3 1.7343E-05 4739 20181213_JW_Orientia_Karp_1_2 173.24 116.01 103280000 24988000 25743000 15691000 9499900 0 4349900 13321000 9686000 4883 1637 4239 30001;30002;30003;30004;30005;30006;30007 19399;19400;19401;19402;19403 19400 5 KPELEEAFIAQTIAQQLER Unmodified 2213.1692 0.16919718 1236 Karp_00903 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.487 68.694 3 8.827E-10 30763 20181213_JW_Orientia_Karp_1_2 169.6 115.32 450170000 64049000 50929000 92207000 25969000 35546000 45479000 103210000 32782000 4884 1236 4240 30008;30009;30010;30011;30012;30013;30014;30015 19404;19405;19406;19407;19408;19409;19410;19411 19405 8 KPFFSSTVIQLQVDDQR Unmodified 2007.0425 0.042540102 1100 Karp_00268 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 57.311 57.706 3 0.00022567 23632 20181213_JW_Orientia_Karp_1_3 128.74 57.224 142650000 0 42189000 26358000 15485000 27308000 22306000 154000 8848700 4885 1100 4241 30016;30017;30018;30019;30020;30021;30022 19412 19412 1 KPIDYTVLDDVGHGVK Unmodified 1754.9203 0.9202997 706 B6VEX5;B6VEX4;F5H1G9;B6VEX3;F8WA55;Q59G41;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B4DKX2 ABI1 Abl interactor 1 yes no 0 0 0 1 By MS/MS 1 45.998 46.508 3 7.9487E-07 14769 20181213_JW_Orientia_Karp_3_2 172.26 118.81 6279900 0 0 0 0 0 0 0 6279900 4886 706 4242 30023 19413 19413 1 KPIIISNYQHIER Unmodified 1609.894 0.89402537 1345 Karp_01521 yes yes 0 0 0 1 By MS/MS By matching 1 1 34.802 35.202 3 0.017819 9698 20181213_JW_Orientia_Karp_2_1 75.483 35.459 5166300 0 0 0 2974900 2191400 0 0 0 4887 1345 4243 30024;30025 19414 19414 0 KPILSTNTFEVANTSGNHSK Unmodified 2144.0862 0.086195831 1178 Karp_00644 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 2 1 38.043 38.351 3;4 3.3393E-17 11841 20181213_JW_Orientia_Karp_1_3 191.71 153.65 1301300000 401270000 151160000 421030000 141590000 25990000 41716000 118500000 0 4888 1178 4244 30026;30027;30028;30029;30030;30031;30032;30033;30034;30035;30036;30037;30038 19415;19416;19417;19418;19419;19420;19421;19422 19417 8 KPILSTNTFEVANTSGNHSK Deamidation (NQ) 2145.0702 0.070211415 1178 Karp_00644 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 4 3 2 3 2 3 1 40.692 40.98 3;4 4.2542E-48 14291 20181213_JW_Orientia_Karp_1_1 241.13 158.78 658600000 143910000 196100000 103180000 44966000 28975000 30968000 110490000 0 4889 1178 4244 30039;30040;30041;30042;30043;30044;30045;30046;30047;30048;30049;30050;30051;30052;30053;30054;30055;30056;30057;30058;30059 19423;19424;19425;19426;19427;19428;19429;19430;19431;19432;19433;19434 19425 586;587;588 12 KPILSTNTFEVANTSGNHSK 2 Deamidation (NQ) 2146.0542 0.054227 1178 Karp_00644 yes yes 0 2 0 1 By MS/MS 1 44.175 44.326 3 0.014512 14286 20181213_JW_Orientia_Karp_2_2 69.747 37.418 0 0 0 0 0 0 0 0 0 4890 1178 4244 30060 19435 19435 586;587;588 1 KPIPDEHLILK Unmodified 1301.7707 0.77072234 256 H7BXG7;A0A024RDH6;A0A024RDD3;D6REX3;O94979-7;O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;H0YAF5;H0Y8W8;H0Y9V3 SEC31A;SEC31L1 Protein transport protein Sec31A yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 38.185 38.434 3 0.011639 11929 20181213_JW_Orientia_Karp_1_3 82.505 53.26 26279000 14927000 6111900 3771200 669580 799420 0 0 0 4891 256 4245 30061;30062;30063;30064;30065 19436;19437 19437 2 KPIVGFIAGVTAPPGK Unmodified 1550.9184 0.91844921 1120 Karp_00318 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 51.694 52.021 2;3 1.4966E-05 18786 20181213_JW_Orientia_Karp_2_3 190.03 161.08 1105900000 214440000 233950000 194940000 214330000 87662000 111350000 44023000 5165900 4892 1120 4246 30066;30067;30068;30069;30070;30071;30072;30073;30074;30075;30076;30077;30078;30079;30080 19438;19439;19440;19441;19442;19443;19444;19445;19446 19444 9 KPLLSDLR Unmodified 940.57057 0.57056597 1298 Karp_01190;Karp_01532;Karp_01820 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 34.89 35.267 2 0.038186 10421 20181213_JW_Orientia_Karp_1_3 109.01 0 30147000 8867900 0 12741000 1711200 0 1494900 2757200 2574700 4893 1298 4247 30081;30082;30083;30084;30085;30086 19447 19447 1 KPLPDHVSIVEPK Unmodified 1457.8242 0.82421447 1623 Q53G83;P23396;P23396-2;E9PPU1;E9PL09;H0YEU2;Q9NQS8;E9PSF4 RPS3 40S ribosomal protein S3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.095 37.385 3 0.00077939 11523 20181213_JW_Orientia_Karp_1_2 164.53 116.25 178950000 68461000 43799000 50528000 0 4122500 0 12043000 0 4894 1623 4248 30087;30088;30089;30090;30091 19448;19449;19450;19451;19452 19449 5 KPLVIIAEDVDGEALSTLVLNR Unmodified 2364.3264 0.3264261 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;B7Z532;B9VPB4;B9VP19 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 71.944 72.01 3 0.031157 32990 20181213_JW_Orientia_Karp_1_1 45.659 7.6904 37785000 10579000 0 5353200 3941300 6437000 2861200 8613900 0 4895 81 4249 30092;30093;30094;30095;30096;30097 19453 19453 1 KPNEGADGQWK Unmodified 1228.5836 0.58364985 832 Q63HR1;Q5VU21;D3DQ69;Q8NC51-4;Q8NC51-3;D3DQ70;Q8NC51-2;Q8NC51 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 19.647 19.955 2 0.00010303 3645 20181213_JW_Orientia_Karp_2_3 167.93 123.56 3433500 0 451620 903890 554000 449400 655350 419250 0 4896 832 4250 30098;30099;30100;30101;30102;30103;30104 19454;19455;19456;19457;19458;19459;19460 19459 7 KPNSELGTK Unmodified 972.52401 0.52400971 1317 Karp_01279 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 11.401 11.835 2 0.012615 1847 20181213_JW_Orientia_Karp_1_3 114.86 5.3799 1649300 0 0 209690 0 1277400 162250 0 0 4897 1317 4251 30105;30106;30107;30108 19461;19462 19462 2 KPPGPPPGPPPPQVVQMYGR Oxidation (M) 2111.0986 0.098615193 206 B4DMD3;B4DY34;A0A024RAW9;Q9Y2W2 WBP11 WW domain-binding protein 11 yes no 0 0 1 1 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 44.54 44.861 3 0.0052712 15519 20181213_JW_Orientia_Karp_1_3 79.514 46.588 39018000 0 14857000 11702000 0 3301500 3123700 6033400 0 4898 206 4252 30109;30110;30111;30112;30113 19463;19464;19465;19466;19467 19463 156 4 KPPGPPPGPPPPQVVQMYGR Unmodified 2095.1037 0.10370057 206 B4DMD3;B4DY34;A0A024RAW9;Q9Y2W2 WBP11 WW domain-binding protein 11 yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 48.471 48.857 3 0.0062838 17849 20181213_JW_Orientia_Karp_1_3 82.877 47.968 28846000 0 15762000 10065000 0 0 0 0 3018600 4899 206 4252 30114;30115;30116 19468 19468 1 KPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGK Unmodified 3492.7664 0.76642087 224 A0A024RBH2;Q07065 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 24.935 25.317 5 0.040574 6338 20181213_JW_Orientia_Karp_1_1 23.887 7.8732 18280000 3867000 4983200 5866300 0 0 0 2284900 1278400 4900 224 4253 30117;30118;30119;30120;30121 19469 19469 1 KPQNAADSYSWVPER Unmodified 1746.8325 0.83254733 1840 Q8IXK1;Q59EB6;Q9NPY3 CD93 Complement component C1q receptor yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 40.405 40.735 3 0.037763 13137 20181213_JW_Orientia_Karp_1_3 54.281 6.6147 81522000 28815000 14619000 26523000 3768600 0 0 7794900 0 4901 1840 4254 30122;30123;30124;30125;30126 19470 19470 1 KPSAGDDFDLGDAVVDGENDDPRPPNPPK Unmodified 3033.3952 0.39518696 1004 H7C2F2;A8MQT7;P14209-2;P14209;B2R932 CD99 CD99 antigen yes no 0 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 2 50.534 50.864 3;4 0.00011431 18126 20181213_JW_Orientia_Karp_2_3 80.477 54.941 310040000 90996000 89356000 4005900 39492000 28804000 28716000 28675000 0 4902 1004 4255 30127;30128;30129;30130;30131;30132;30133;30134;30135;30136 19471;19472;19473;19474;19475;19476 19475 6 KPSAGDDFDLGDAVVDGENDDPRPPNPPK Deamidation (NQ) 3034.3792 0.37920255 1004 H7C2F2;A8MQT7;P14209-2;P14209;B2R932 CD99 CD99 antigen yes no 0 1 0 2 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 51.604 51.949 4 0.00011044 17980 20181213_JW_Orientia_Karp_3_1 75.945 41.729 167400000 20694000 35344000 49982000 16663000 15921000 12392000 14314000 2089200 4903 1004 4255 30137;30138;30139;30140;30141;30142;30143;30144 19477;19478;19479 19479 367;368 3 KPTFEVAHLDLAR Unmodified 1495.8147 0.81471242 1578 P09914-2;P09914 IFIT1 Interferon-induced protein with tetratricopeptide repeats 1 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 43.982 44.224 3 0.013031 15755 20181213_JW_Orientia_Karp_1_1 91.712 61.161 110380000 23442000 62630000 22594000 0 1464800 0 0 245090 4904 1578 4256 30145;30146;30147;30148;30149 19480;19481 19480 2 KPVEEYANCHLAR Unmodified 1585.7671 0.7671103 578 B4DI57;Q53H26;Q06AH7;P02787;B4DHZ6 TF Serotransferrin yes no 0 0 0 1 By MS/MS 1 27.217 27.217 3 0.0031982 7123 20181213_JW_Orientia_Karp_1_1 121.21 90.303 17117000 17117000 0 0 0 0 0 0 0 4905 578 4257 30150 19482;19483 19482 2 KPVVPPKPSFADQVTSK Unmodified 1824.0145 0.014534437 1268 Karp_01076 yes yes 0 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 37.193 37.526 3;4 0.011791 10378 20181213_JW_Orientia_Karp_2_2 135.57 107.6 1223300000 377590000 217220000 305230000 104160000 53843000 0 165230000 0 4906 1268 4258 30151;30152;30153;30154;30155;30156;30157;30158;30159;30160;30161;30162 19484;19485;19486;19487 19486 4 KQELEEILHDLESR Unmodified 1737.8897 0.88972785 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 57.14 57.441 3 5.822E-05 23702 20181213_JW_Orientia_Karp_1_2 160.46 119.58 146990000 34798000 58299000 20706000 913940 11961000 7476200 0 12836000 4907 944 4259 30163;30164;30165;30166;30167;30168;30169 19488;19489;19490;19491;19492 19489 5 KQELLEALTK Unmodified 1171.6812 0.68123863 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;P12956-2;F5H1I8;B4E356;Q6IC76 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 42.219 42.579 2 0.0016765 14814 20181213_JW_Orientia_Karp_1_1 139.15 84.431 149060000 36018000 49792000 46004000 4038400 0 0 10358000 2852500 4908 48 4260 30170;30171;30172;30173;30174;30175 19493;19494;19495;19496;19497 19493 5 KQEYFDYIK Unmodified 1232.6077 0.60773933 1216 Karp_00883 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 41.171 41.531 2 0.0011169 12971 20181213_JW_Orientia_Karp_2_1 153.24 62.644 177010000 0 79729000 40610000 12511000 14557000 0 29602000 0 4909 1216 4261 30176;30177;30178;30179;30180 19498;19499;19500;19501 19499 4 KQFSNLYVYK Unmodified 1288.6816 0.68157298 1413 Karp_02239 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 37.852 38.186 2 0.01747 11495 20181213_JW_Orientia_Karp_3_1 106.18 52.422 33401000 4938600 9454100 11330000 1674000 0 1099500 4904500 0 4910 1413 4262 30181;30182;30183;30184;30185;30186 19502 19502 1 KQGGLGPMNIPLVSDPK Unmodified 1749.9447 0.94474031 1773 Q06830;B2R4P2 PRDX1 Peroxiredoxin-1 yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 54.402 54.715 3 0.036762 21639 20181213_JW_Orientia_Karp_1_3 53.924 22.096 56141000 0 0 32415000 4184400 10178000 9363900 0 0 4911 1773 4263 30187;30188;30189;30190 19503 19503 1 KQGGLGPMNIPLVSDPK Oxidation (M) 1765.9397 0.93965493 1773 Q06830;B2R4P2 PRDX1 Peroxiredoxin-1 yes no 0 0 1 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 47.529 47.856 3 0.021263 16308 20181213_JW_Orientia_Karp_2_1 57.788 25.512 85451000 10241000 19464000 9196300 13992000 0 12371000 0 20187000 4912 1773 4263 30191;30192;30193;30194;30195;30196 19504 19504 1386 1 KQISNLQQSISDAEQR Unmodified 1843.9388 0.93880331 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 1 37.112 37.441 2;3 1.6938E-48 12029 20181213_JW_Orientia_Karp_1_1 260.97 187.3 334570000 107800000 101800000 8472000 66096000 0 14990000 30477000 4928100 + 4913 995;996 4264 30197;30198;30199;30200;30201;30202;30203;30204;30205;30206 19505;19506;19507;19508;19509;19510;19511;19512 19505 8 KQMALLMQMTARDNNSTPNHPSQTTPAQK Oxidation (M);2 Deamidation (NQ) 3256.5275 0.52748024 927 F5GYX2 ANKRD12 yes yes 0 2 1 2 By MS/MS By matching 1 1 48.255 48.635 3 0.013526 16648 20181213_JW_Orientia_Karp_2_2 55.469 8.591 10053000 0 0 0 0 5978600 0 0 4073900 4914 927 4265 30207;30208 19513 19513 324;325;1717 524 1 KQPPVSPGTALVGSQK Unmodified 1592.8886 0.88860564 247 B4DWA0;A0A024RCT9;P17096;P17096-3 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 0 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 35.296 35.639 2 0.0012367 11111 20181213_JW_Orientia_Karp_1_1 126.09 79.267 70729000 14703000 16815000 19904000 0 4296800 0 6970800 8039700 4915 247 4266 30209;30210;30211;30212;30213;30214 19514;19515 19514 2 KQTALVELLK Unmodified 1141.7071 0.70705945 792 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 2 1 2 1 44.499 44.825 2;3 2.9918E-05 14789 20181213_JW_Orientia_Karp_2_1 167.93 77.332 2167500000 389500000 597150000 220760000 66367000 218560000 438410000 141320000 95464000 + 4916 792 4267 30215;30216;30217;30218;30219;30220;30221;30222;30223;30224;30225;30226 19516;19517;19518;19519;19520;19521;19522 19519 7 KQYQDQLKQDLDNR 2 Deamidation (NQ) 1792.8592 0.85915601 1209 Karp_00867 yes yes 0 2 0 2 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 49.016 49.396 2 0.012073 18038 20181213_JW_Orientia_Karp_1_3 107.21 12.896 58913000 0 7164700 29307000 13717000 8405400 0 318430 0 4917 1209 4268 30227;30228;30229;30230;30231 19523 19523 1821;1822 1 KRHEMPPHIYAITDTAYR Oxidation (M) 2214.1004 0.10040611 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;Q5BKV1 MYH9 Myosin-9 yes no 0 0 1 2 By MS/MS By MS/MS By matching By matching 1 1 1 1 32.83 33.08 4 0.034772 9858 20181213_JW_Orientia_Karp_1_1 62.709 20.591 50333000 15162000 0 23228000 8769500 0 3173200 0 0 4918 47 4269 30232;30233;30234;30235 19524;19525 19524 38 2 KRHYALVDCPGHVDYIK Unmodified 2070.0469 0.046913973 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 32.76 33.144 4 0.012668 8321 20181213_JW_Orientia_Karp_2_2 86.539 55.22 227740000 0 0 0 0 202230000 8434100 17069000 0 4919 1176;1244 4270 30236;30237;30238 19526;19527;19528;19529 19526 4 KSDFLIQTNQSR Unmodified 1435.7419 0.74194141 1318 Karp_01280 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 35.747 36.047 3 0.00022482 11344 20181213_JW_Orientia_Karp_1_1 150.51 72.918 65271000 25295000 18980000 17508000 0 0 0 3487100 0 4920 1318 4271 30239;30240;30241;30242 19530;19531;19532;19533 19530 4 KSDFLIQTNQSRPIEGIPVSIK Deamidation (NQ) 2470.3431 0.3431388 1318 Karp_01280 yes yes 0 1 0 2 By matching By matching By matching By MS/MS 1 1 1 1 58.736 58.936 4 0.027276 22315 20181213_JW_Orientia_Karp_2_2 54.225 38.5 64657000 14364000 26795000 17370000 0 6128200 0 0 0 4921 1318 4272 30243;30244;30245;30246 19534 19534 754;1838 1 KSDFLIQTNQSRPIEGIPVSIK Unmodified 2469.3591 0.35912321 1318 Karp_01280 yes yes 0 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.436 54.751 4 0.035932 20041 20181213_JW_Orientia_Karp_2_2 44.743 30.417 282830000 52409000 72105000 55633000 24201000 43059000 31964000 0 3461100 4922 1318 4272 30247;30248;30249;30250;30251;30252;30253 19535;19536 19535 0 KSDGQLVNAGNIIVK Unmodified 1554.873 0.87295558 1155 Karp_00570 yes yes 0 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 2 2 1 43.326 43.659 2;3 0.0021405 14135 20181213_JW_Orientia_Karp_2_1 124.48 80.984 406860000 180570000 143710000 19910000 5782700 0 2966400 48681000 5248500 4923 1155 4273 30254;30255;30256;30257;30258;30259;30260;30261;30262;30263;30264 19537;19538;19539;19540 19538 3 KSDIDEIVLVGGSTR Unmodified 1587.8468 0.84680041 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 50.337 50.641 2;3 0.00052014 17097 20181213_JW_Orientia_Karp_3_1 175.6 103.72 177630000 41686000 29014000 20856000 50420000 14721000 16373000 2693600 1866800 4924 1585 4274 30265;30266;30267;30268;30269;30270;30271;30272;30273;30274;30275;30276;30277;30278 19541;19542;19543;19544;19545 19545 5 KSDIYQMLDSDSK Unmodified 1528.7079 0.70792366 1366 Karp_01876 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 44.347 44.669 2;3 2.3082E-16 15287 20181213_JW_Orientia_Karp_1_3 212.68 162.65 120420000 27166000 55932000 25360000 1791300 0 4763200 4262200 1149100 4925 1366 4275 30279;30280;30281;30282;30283;30284;30285;30286;30287;30288;30289;30290 19546;19547;19548;19549;19550;19551;19552 19548 6 KSDIYQMLDSDSK Oxidation (M) 1544.7028 0.70283829 1366 Karp_01876 yes yes 0 0 1 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.757 35.041 3 0.00014195 9290 20181213_JW_Orientia_Karp_3_2 140.31 87.38 81724000 15549000 19534000 20295000 0 6351800 2446400 17547000 0 4926 1366 4275 30291;30292;30293;30294;30295;30296;30297 19553;19554;19555;19556 19556 948 4 KSDVEAIFSK Unmodified 1122.5921 0.59208927 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575;D3DPI2;B4DMJ1;B4DSU6;Q6PKD2;O60812;B7ZW38;B2RXH8;G3V4M8;Q569J8;G3V2H6;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 38.869 39.202 2 0.0027458 11499 20181213_JW_Orientia_Karp_3_2 115.7 58.11 112120000 17233000 38156000 23110000 10267000 8062100 5511500 6981800 2799400 4927 400;452 4276 30298;30299;30300;30301;30302;30303;30304;30305 19557;19558;19559;19560;19561 19561 4 KSESEVEEAAAIIAQRPDNPR Unmodified 2309.1612 0.16115169 1815 Q16643;Q16643-3;Q16643-2;D6R9W4;B7Z2Z0;D6R9Q9;B3KSQ7 DBN1 Drebrin yes no 0 0 0 2 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 46.743 47.094 4 0.017015 16621 20181213_JW_Orientia_Karp_1_3 70.944 36.85 37241000 0 13603000 7618200 3382100 0 6406500 0 6231600 4928 1815 4277 30306;30307;30308;30309;30310 19562 19562 1 KSFTPDHVVYAR Unmodified 1418.7306 0.73064844 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5;Q6NZI2-2;Q6NZI2-3 PTRF Polymerase I and transcript release factor yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 31.569 31.907 3 0.0093053 8729 20181213_JW_Orientia_Karp_1_3 85.973 29.569 18971000 0 8951400 7181300 2053500 0 785260 0 0 4929 1868 4278 30311;30312;30313;30314;30315 19563;19564;19565 19564 3 KSGNTAENLVGLLER Unmodified 1599.858 0.8580338 1131 Karp_00376 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.975 52.263 3 0.0058108 20327 20181213_JW_Orientia_Karp_1_2 93.424 30.333 135060000 34170000 53415000 0 27046000 0 20426000 0 0 4930 1131 4279 30316;30317;30318;30319;30320 19566;19567;19568;19569;19570 19567 5 KSGNTAENLVGLLER Deamidation (NQ) 1600.842 0.84204938 1131 Karp_00376 yes yes 0 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 57.722 57.999 3 0.030805 24065 20181213_JW_Orientia_Karp_1_2 62.357 11.571 19268000 4370800 6202200 4455200 0 2306000 1678100 0 255720 4931 1131 4279 30321;30322;30323;30324;30325;30326 19571 19571 524 0 KSLLASSENLASSSAAFLETAK Unmodified 2224.1587 0.15869207 1166 Karp_00620 yes yes 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 59.422 59.672 3 0.014517 24833 20181213_JW_Orientia_Karp_1_3 61.304 39.293 30129000 14672000 0 4517300 0 0 10679000 260830 0 4932 1166 4280 30327;30328;30329;30330 19572 19572 1 KSPEALQCYAESK Unmodified 1509.7133 0.71334339 1333 Karp_01373 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 30.678 31.028 3 0.029213 8064 20181213_JW_Orientia_Karp_3_1 101.61 62.028 43259000 31662000 0 4465000 1925700 1328500 0 3878100 0 4933 1333 4281 30331;30332;30333;30334;30335 19573 19573 1 KSPEALQCYAESLAIENASSLTK Unmodified 2509.237 0.23701875 1333 Karp_01373 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 60.764 61.066 3 0.022237 25997 20181213_JW_Orientia_Karp_1_2 52.769 26.764 28973000 10384000 5252200 0 1650900 3428200 3976400 0 4282000 4934 1333 4282 30336;30337;30338;30339;30340;30341 19574;19575 19575 2 KSQIFSTAEDNQSAVTVR Unmodified 1979.9912 0.99123281 1074 Karp_00050 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By matching 2 2 1 2 1 2 1 39.717 40.059 2;3 0.013883 12888 20181213_JW_Orientia_Karp_1_2 72.932 31.918 783300000 142170000 172360000 176800000 127390000 18421000 0 144490000 1666700 4935 1074 4283 30342;30343;30344;30345;30346;30347;30348;30349;30350;30351;30352 19576;19577 19576 2 KSQIFSTASDNQPTVTIK Unmodified 1964.0215 0.021470309 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1 1 43.021 43.308 3 0.0069146 14656 20181213_JW_Orientia_Karp_1_3 86.016 48.247 48151000 9237200 14364000 7117300 0 10376000 0 5997100 1059500 4936 1585 4284 30353;30354;30355;30356;30357;30358;30359;30360 19578;19579;19580;19581 19579 4 KTAGNANPELINEILHTK Unmodified 1962.0534 0.053439139 1317 Karp_01279 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 48.81 49.112 3 0.00013399 16889 20181213_JW_Orientia_Karp_2_2 174.87 116.71 101390000 10728000 37223000 10634000 13127000 11906000 8585700 0 9188900 4937 1317 4285 30361;30362;30363;30364;30365;30366;30367 19582;19583;19584;19585 19584 4 KTGPGFIEQLR Unmodified 1244.6877 0.68772099 1268 Karp_01076 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 40.268 40.568 3 0.0011774 13210 20181213_JW_Orientia_Karp_1_2 122.18 42.948 87217000 30776000 17296000 29019000 4141400 1516200 0 4469100 0 4938 1268 4286 30368;30369;30370;30371;30372;30373 19586;19587;19588;19589 19587 4 KTMADRNLDQLLSNLEDLSNSIQK 4 Deamidation (NQ) 2749.3328 0.33276963 1965 Q9BUN5 CCDC28B Coiled-coil domain-containing protein 28B yes yes 0 4 0 2 By MS/MS By matching 1 1 64.761 64.985 3 0.02681 28056 20181213_JW_Orientia_Karp_1_3 45.395 9.1493 8508600 0 0 7377100 1131400 0 0 0 0 4939 1965 4287 30374;30375 19590 19590 1213;1214;1215;2080 1 KTNLAQMSSK Oxidation (M) 1122.5703 0.57030797 1346 Karp_01522 yes yes 0 0 1 1 By MS/MS By matching By matching By matching 1 1 1 1 8.3328 8.7986 2 0.036629 1487 20181213_JW_Orientia_Karp_1_2 109.83 71.076 509760 0 91204 0 0 104290 119220 0 195040 4940 1346 4288 30376;30377;30378;30379 19591 19591 914 1 KTQEQLALEMAELTAR Unmodified 1830.9509 0.9509479 1630 V9HWC0;P26038 HEL70;MSN Moesin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.376 55.643 3 0.0030964 20653 20181213_JW_Orientia_Karp_2_1 151.11 106.54 203570000 41550000 42032000 36526000 13392000 39493000 30580000 0 0 4941 1630 4289 30380;30381;30382;30383;30384;30385 19592;19593;19594;19595;19596;19597 19595 6 KTSSAGSLTNQQLIQQSSTLSEYK Unmodified 2598.3137 0.31368916 1350 Karp_01526 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 46.502 46.871 3 0.00013569 16507 20181213_JW_Orientia_Karp_1_3 110.57 75.034 36844000 0 0 13469000 4423300 5482000 6723200 1417500 5329500 4942 1350 4290 30386;30387;30388;30389;30390;30391 19598;19599;19600;19601 19598 4 KTTTLSGTAPAAGVVPSR Unmodified 1712.9421 0.94209778 879 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;A0A024R2V0;Q86Y04;P27816-4;H0Y2V1;H7C4C5;F8W9U4;B5MEG9;B4DSQ1 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.679 37.929 3 0.012148 12269 20181213_JW_Orientia_Karp_1_1 75.97 38.958 29477000 4158800 0 9275900 3624900 11129000 1288600 0 0 4943 879 4291 30392;30393;30394;30395;30396 19602;19603;19604;19605;19606 19602 5 KTVCLQETLPTGIG Deamidation (NQ) 1516.7807 0.78069468 190 A0A024RA18 hCG_2011575 yes yes 0 1 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 25.045 25.489 3 0.042373 5917 20181213_JW_Orientia_Karp_2_3 47.062 12.164 41555000 0 17952000 0 1029100 1986300 5015200 6527000 9045100 4944 190 4292 30397;30398;30399;30400;30401;30402 19607 19607 1318 0 KTVTAMDVVYALK Oxidation (M) 1453.7851 0.78505177 447 B2R4R0;P62805 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 46.588 46.788 3 0.0030385 17264 20181213_JW_Orientia_Karp_1_1 100.11 59.006 71752000 31778000 37921000 0 0 0 2053000 0 0 4945 447 4293 30403;30404;30405;30406 19608;19609;19610 19608 295 2 KTVTAMDVVYALK Unmodified 1437.7901 0.79013715 447 B2R4R0;P62805 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 53.802 54.095 2;3 0.0031315 21948 20181213_JW_Orientia_Karp_1_1 160.46 101.95 242460000 75530000 76142000 63973000 7256300 5414900 11742000 0 2403400 4946 447 4293 30407;30408;30409;30410;30411;30412;30413;30414;30415;30416;30417;30418;30419;30420 19611;19612;19613;19614;19615;19616;19617 19611 6 KTVTAMDVVYALKR Unmodified 1593.8912 0.89124818 447 B2R4R0;P62805 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 48.381 48.641 3 0.0033808 15696 20181213_JW_Orientia_Karp_3_2 138.31 104.72 100320000 28682000 27414000 33199000 0 1886900 1063900 0 8075400 4947 447 4294 30421;30422;30423;30424;30425;30426 19618 19618 1 KVAHSLLEDINK Unmodified 1365.7616 0.76161421 1139 Karp_00451 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 32.811 33.295 3 0.0027654 9178 20181213_JW_Orientia_Karp_3_1 105.25 67.925 14013000 0 0 0 4769000 0 3198500 6045300 0 4948 1139 4295 30427;30428;30429 19619;19620;19621 19621 3 KVASEALSAAHSK Unmodified 1297.699 0.69901396 1217 Karp_00884 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 18.106 18.432 3 0.00020615 3595 20181213_JW_Orientia_Karp_1_3 155.14 102.02 30215000 5724500 10576000 6819900 2314200 0 2614000 0 2166000 4949 1217 4296 30430;30431;30432;30433;30434;30435 19622;19623;19624;19625;19626;19627 19624 6 KVASPVDTVNDSIR Unmodified 1499.7944 0.79437091 1113 Karp_00296 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 38.693 39 3 8.9392E-05 11770 20181213_JW_Orientia_Karp_2_1 172.85 119.72 94079000 22185000 43202000 11724000 8128200 4316500 1594200 2929000 0 4950 1113 4297 30436;30437;30438;30439;30440;30441;30442 19628;19629;19630;19631;19632;19633 19631 6 KVDWHGNMLSLSTGK Oxidation (M) 1687.8352 0.83518986 1127 Karp_00330 yes yes 0 0 1 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 37.877 38.227 3 0.029145 12059 20181213_JW_Orientia_Karp_1_2 51.466 27.051 36081000 8423900 9122000 10497000 1567600 0 0 6470200 0 4951 1127 4298 30443;30444;30445;30446;30447 19634 19634 1 KVDWHGNMLSLSTGK Unmodified 1671.8403 0.84027524 1127 Karp_00330 yes yes 0 0 0 1 By matching By MS/MS By matching 1 1 1 43.91 44.143 3 0.01612 14978 20181213_JW_Orientia_Karp_1_3 73.593 28.247 31967000 0 15592000 15521000 0 853560 0 0 0 4952 1127 4298 30448;30449;30450 19635 19635 1 KVEAQLQELQVK Unmodified 1411.8035 0.80347903 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.064 39.381 3 2.7308E-17 11937 20181213_JW_Orientia_Karp_2_1 222.2 122.66 379360000 172020000 96854000 71117000 19537000 7602700 0 12231000 0 4953 47 4299 30451;30452;30453;30454;30455;30456 19636;19637;19638;19639;19640;19641;19642 19639 7 KVEELEGEITTLNHK Unmodified 1738.9101 0.91012895 149 A0A024R7H5;B4E0Z6;Q10589-2;Q10589 BST2 Bone marrow stromal antigen 2 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 39.442 39.786 3 1.5112E-09 13337 20181213_JW_Orientia_Karp_1_1 192.4 137.07 268700000 94283000 55451000 48589000 7761800 25299000 0 32552000 4761800 4954 149 4300 30457;30458;30459;30460;30461;30462;30463;30464 19643;19644;19645;19646;19647;19648;19649;19650 19643 8 KVEELEGEITTLNHK Deamidation (NQ) 1739.8941 0.89414453 149 A0A024R7H5;B4E0Z6;Q10589-2;Q10589 BST2 Bone marrow stromal antigen 2 yes no 0 1 0 1 By MS/MS By matching By matching By matching 1 1 1 1 40.414 40.714 3 0.015945 13801 20181213_JW_Orientia_Karp_1_1 79.804 42.44 53428000 8529000 18483000 17114000 0 0 0 9302200 0 4955 149 4300 30465;30466;30467;30468 19651 19651 60 1 KVEQQQQNKPAVK Unmodified 1523.842 0.8419898 1059 Karp_00003 yes yes 0 0 0 2 By MS/MS 1 14.746 15.045 3 0.014244 2206 20181213_JW_Orientia_Karp_1_3 104.94 73.458 0 0 0 0 0 0 0 0 0 4956 1059 4301 30469 19652 19652 1 KVESLQEEIAFLK Unmodified 1532.845 0.84500949 1571 V9HWE1;P08670;B0YJC4;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 1 1 55.038 55.357 2;3 5.2286E-45 19319 20181213_JW_Orientia_Karp_3_1 272.65 203.37 2915800000 635530000 898650000 400280000 112530000 417340000 369970000 45271000 36266000 4957 1571 4302 30470;30471;30472;30473;30474;30475;30476;30477;30478;30479;30480;30481;30482;30483;30484 19653;19654;19655;19656;19657;19658 19657 5 KVESLQEEIAFLKK Unmodified 1660.94 0.93997251 1571 V9HWE1;P08670;B0YJC4;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 47.642 47.944 3 0.0006253 17551 20181213_JW_Orientia_Karp_1_2 158.52 129.53 129620000 17099000 51674000 18195000 9153700 14113000 7682800 0 11699000 4958 1571 4303 30485;30486;30487;30488;30489;30490;30491 19659;19660 19660 2 KVGPAQIIIPNGPR Deamidation (NQ) 1459.8511 0.85109792 1315 Karp_01271 yes yes 0 1 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 47.311 47.561 3 0.0080345 17209 20181213_JW_Orientia_Karp_1_2 92.856 63.785 162310000 68471000 65199000 9522000 4381100 2568800 12164000 0 0 4959 1315 4304 30492;30493;30494;30495;30496;30497 19661;19662;19663;19664;19665 19661 746 5 KVHVIFNYK Unmodified 1146.655 0.6549643 1636 Q53G71;V9HW88;P27797;B4DHR1;K7EJB9;B4E2Y9 HEL-S-99n;CALR Calreticulin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 30.384 30.901 3 0.024354 7669 20181213_JW_Orientia_Karp_2_1 67.897 37.1 3673100 0 0 0 1028900 1418400 0 1225900 0 4960 1636 4305 30498;30499;30500 19666;19667;19668 19666 3 KVIQYLAYVASSHK Unmodified 1605.8879 0.88787736 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;Q5BKV1;Q9UMJ0 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 42.354 42.698 3 1.2119E-05 13617 20181213_JW_Orientia_Karp_3_1 170.26 132.74 145940000 57700000 39478000 26482000 606900 0 1293800 19388000 990450 4961 47 4306 30501;30502;30503;30504;30505;30506;30507 19669;19670;19671;19672 19672 4 KVITELEK Unmodified 958.5699 0.56989727 1251 Karp_00928 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 26.351 26.678 2 0.019078 5288 20181213_JW_Orientia_Karp_3_2 141.52 26.026 126810000 39441000 479390 54370000 0 9972300 12614000 0 9929300 4962 1251 4307 30508;30509;30510;30511;30512;30513 19673;19674 19674 2 KVLEAPVR Unmodified 910.56 0.56000128 1296 Karp_01187 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 26.762 27.07 2 0.041047 6133 20181213_JW_Orientia_Karp_2_3 107.01 59.159 545010000 102930000 81941000 99594000 41400000 71504000 41195000 106450000 0 4963 1296 4308 30514;30515;30516;30517;30518;30519;30520 19675 19675 1 KVMADLAVHNADSFLHLVELTK Oxidation (M) 2466.2941 0.29408012 1249 Karp_00926 yes yes 0 0 1 1 By matching By matching By MS/MS By MS/MS 1 1 1 1 59.226 59.488 4 0.0042543 22590 20181213_JW_Orientia_Karp_2_2 76.693 53.819 24808000 0 8925600 4475100 0 6849800 4557700 0 0 4964 1249 4309 30521;30522;30523;30524 19676;19677 19676 808 2 KVNEMIVTGQYGR Oxidation (M);2 Deamidation (NQ) 1511.729 0.72899346 656 F5H7V8;B4DXI4;Q7Z2W9 MRPL21 39S ribosomal protein L21, mitochondrial yes no 0 2 1 1 By MS/MS 1 61.427 61.978 2 0.022886 21689 20181213_JW_Orientia_Karp_3_1 68.551 19.912 0 0 0 0 0 0 0 0 0 4965 656 4310 30525 19678 19678 229;1560 405 1 KVPQVSTPTLVEVSR Unmodified 1638.9305 0.93047046 792;620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;B7WNR0;B4DPR2;Q8IUK7;C9JKR2;H0YA55;D6RHD5;P02768-2;CON__P02769 ALB Serum albumin no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 46.249 46.569 2;3 1.2794E-19 16965 20181213_JW_Orientia_Karp_1_1 214.58 174.77 1682900000 359950000 307480000 222570000 310590000 102940000 247040000 19402000 112980000 + 4966 620;792 4311 30526;30527;30528;30529;30530;30531;30532;30533;30534;30535;30536;30537;30538;30539;30540;30541 19679;19680;19681;19682;19683;19684;19685;19686;19687;19688 19679 9 KVPTNLPNQDMLK Oxidation (M) 1512.797 0.79701344 1118 Karp_00308 yes yes 0 0 1 1 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 35.905 36.18 3 0.0053655 11349 20181213_JW_Orientia_Karp_1_1 88.803 47.262 36206000 14193000 0 5965000 0 2465600 0 13582000 0 4967 1118 4312 30542;30543;30544;30545;30546 19689;19690;19691 19689 638 2 KVPTNLPNQDMLK Unmodified 1496.8021 0.80209882 1118 Karp_00308 yes yes 0 0 0 1 By matching By matching By MS/MS 1 1 1 41.701 41.985 3 0.030787 13363 20181213_JW_Orientia_Karp_3_1 60.364 38.035 42437000 21832000 0 13531000 0 0 0 7073700 0 4968 1118 4312 30547;30548;30549 19692 19692 1 KVPWFDQQNGR Deamidation (NQ) 1374.668 0.66804818 1926 Q92522 H1FX Histone H1x yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 43.933 44.154 3 0.00089649 16255 20181213_JW_Orientia_Karp_1_1 152.69 111.93 80401000 28830000 39651000 11533000 386500 0 0 0 0 4969 1926 4313 30550;30551;30552;30553;30554;30555;30556;30557 19693;19694;19695;19696;19697 19694 1203 5 KVTHAVVTVPAYFNDAQR Unmodified 2015.0589 0.058858868 1585 V9HWB4;P11021;B4DEF7 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 42.777 43.087 4 0.0083322 13859 20181213_JW_Orientia_Karp_3_1 75.376 41.58 28117000 14586000 0 4324100 1606900 0 370930 7228400 0 4970 1585 4314 30558;30559;30560;30561;30562 19698;19699;19700 19700 3 KVTSNLETELK Unmodified 1260.6925 0.6925316 1428 Karp_02381 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 31.527 31.81 2;3 8.6669E-07 9225 20181213_JW_Orientia_Karp_1_1 190.57 114.09 38961000 10147000 17382000 7927300 3091500 0 413010 0 0 4971 1428 4315 30563;30564;30565;30566;30567;30568 19701;19702;19703 19701 3 KVVNPLFEK Unmodified 1072.6281 0.62808085 1736 P62424;Q5T8U3 RPL7A 60S ribosomal protein L7a yes no 0 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 36.966 37.309 2 0.0036498 10988 20181213_JW_Orientia_Karp_3_1 140.35 78.391 84325000 33693000 17813000 17613000 0 3132200 0 7863400 4209700 4972 1736 4316 30569;30570;30571;30572;30573;30574 19704;19705 19705 2 KVYELELSVR Unmodified 1234.6921 0.69213767 1219 Karp_00886 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 44.805 45.038 3 0.00036372 15694 20181213_JW_Orientia_Karp_1_2 128.81 65.988 34621000 0 20712000 12803000 0 1105400 0 0 0 4973 1219 4317 30575;30576;30577;30578 19706;19707 19707 2 KWHEEVEIYR Unmodified 1387.6884 0.68844927 800 CON__P15497 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 33.413 33.74 3 0.00047344 10286 20181213_JW_Orientia_Karp_1_1 124.1 62.668 101050000 25865000 24180000 41384000 4492200 0 678500 0 4449200 + 4974 800 4318 30579;30580;30581;30582;30583;30584 19708;19709;19710 19708 2 KWILIDATNLVLGR Unmodified 1610.9508 0.95081197 1413 Karp_02239 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 70.352 70.477 3 0.00015363 28100 20181213_JW_Orientia_Karp_2_2 193 109.13 35792000 9463400 0 4002000 0 10075000 0 12252000 0 4975 1413 4319 30585;30586;30587;30588 19711;19712;19713 19712 3 KWPQQVVQK Unmodified 1139.6451 0.64512789 929 F5H2U8;F5H2A4;P52926;Q8IZX8;Q86U91;B2KX87;D2WHG0;A5Y0M9 HMGA2;HMGIC;HMGA2/RAD51L1 fusion;HMGA2/WIF1 fusion High mobility group protein HMGI-C yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 2 1 1 1 1 1 29.122 29.481 2 0.019077 6493 20181213_JW_Orientia_Karp_3_2 108.09 75.195 35715000 15226000 0 4359100 3804700 1490900 1581100 6452500 2801100 4976 929 4320 30589;30590;30591;30592;30593;30594;30595;30596 19714;19715;19716 19716 3 KWVQGNTDEAQEELAWK 3 Deamidation (NQ) 2033.9218 0.92181584 872 J3QL61;Q2XPN4;E7EMD6;O43572 AKAP10 A-kinase anchor protein 10, mitochondrial yes no 0 3 0 1 By MS/MS By MS/MS 1 1 44.859 45.213 2 0.005131 15609 20181213_JW_Orientia_Karp_1_3 113.38 32.673 0 0 0 0 0 0 0 0 0 4977 872 4321 30597;30598 19717;19718 19717 312;1688;1689 2 KYASSANLHLPK Unmodified 1327.7248 0.72483478 803 CON__P34955 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.958 29.316 3 1.0589E-05 7090 20181213_JW_Orientia_Karp_3_1 174.23 117.59 148890000 19515000 32813000 11060000 14247000 9219300 6073400 43301000 12662000 + 4978 803 4322 30599;30600;30601;30602;30603;30604;30605;30606 19719;19720;19721;19722;19723;19724;19725;19726 19725 8 KYAVHDPDNLYNQGDK Deamidation (NQ) 1876.8592 0.85915601 1233 Karp_00900 yes yes 0 1 0 1 By MS/MS By matching By matching By matching 1 1 1 1 32.425 32.787 3 0.01181 9272 20181213_JW_Orientia_Karp_1_2 84.62 59.011 12381000 0 3166100 4237900 0 0 898190 4078500 0 4979 1233 4323 30607;30608;30609;30610 19727 19727 637 1 KYAVHDPDNLYNQGDK Unmodified 1875.8751 0.87514042 1233 Karp_00900 yes yes 0 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 2 1 1 1 31.102 31.489 3 0.0035306 7914 20181213_JW_Orientia_Karp_2_1 146.1 93.136 322180000 75305000 65924000 32823000 29806000 14416000 14215000 27938000 61753000 4980 1233 4323 30611;30612;30613;30614;30615;30616;30617;30618;30619;30620 19728;19729;19730;19731 19729 3 KYDAFLASESLIK Unmodified 1483.7922 0.79224564 1738 P62906;A0A024RCW3;Q1JQ76 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 53.665 53.935 2;3 0.0025129 21201 20181213_JW_Orientia_Karp_1_3 109.6 72.236 41050000 23068000 4863400 8930900 1451500 0 2736500 0 0 4981 1738 4324 30621;30622;30623;30624;30625;30626 19732;19733;19734 19734 3 KYDEELEER Unmodified 1209.5513 0.55134667 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;E9PJ32 TAGLN Transgelin yes no 0 0 0 1 By MS/MS By MS/MS 1 1 26.706 26.706 2 0.0035845 6924 20181213_JW_Orientia_Karp_1_1 144.65 74.838 2434300 2434300 0 0 0 0 0 0 0 4982 1761 4325 30627;30628 19735;19736 19735 2 KYEDEINK Unmodified 1037.5029 0.50293991 804;1657;814;796 CON__Q3TTY5;CON__P12035;P12035;CON__Q01546;CON__P35908;P35908 KRT3;KRT2 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 20.934 21.212 2 0.0059225 4134 20181213_JW_Orientia_Karp_1_3 176.6 98.491 22426000 6236100 4477900 4799800 1817700 1662900 1579800 1851300 0 + 4983 814;796;804;1657 4326 30629;30630;30631;30632;30633;30634;30635 19737;19738;19739 19738 3 KYEDEINKR Unmodified 1193.6041 0.60405094 804;1657;814;796 CON__Q3TTY5;CON__P12035;P12035;CON__Q01546;CON__P35908;P35908 KRT3;KRT2 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 19.242 19.518 3 0.019464 3769 20181213_JW_Orientia_Karp_1_1 135.55 76.396 38662000 7731300 19630000 0 3684400 100030 5410100 2105200 0 + 4984 814;796;804;1657 4327 30636;30637;30638;30639;30640;30641;30642 19740;19741;19742 19740 3 KYEMFAQTLQQSR Unmodified 1628.7981 0.79807608 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 42.902 43.232 3 0.0031634 15072 20181213_JW_Orientia_Karp_1_1 104.7 43.164 50194000 14189000 17673000 8286100 2219800 1077300 0 6481900 266890 4985 1708 4328 30643;30644;30645;30646;30647;30648;30649 19743;19744;19745 19743 3 KYEQGFITDPVVLSPK Unmodified 1819.972 0.97200092 710 Q6QE17;B7Z1G4;H0Y4R1;P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 54.638 54.905 3 0.0066521 21705 20181213_JW_Orientia_Karp_1_3 89.232 59.421 49077000 9433000 12803000 13114000 5747900 2882200 5097800 0 0 4986 710 4329 30650;30651;30652;30653;30654;30655 19746;19747;19748 19747 3 KYILGNPLTPGVTQGPQIDK Unmodified 2138.1736 0.17355427 1538 V9HW83;V9HVX6;P00352;B4DXX3;B4DDF8 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 53.478 53.728 3 0.0079594 21671 20181213_JW_Orientia_Karp_1_1 78.552 46.601 38129000 20389000 0 12788000 4953000 0 0 0 0 4987 1538 4331 30656;30657;30658 19749 19749 1 KYMIEVPLYK Oxidation (M) 1298.6944 0.69444585 1225 Karp_00892 yes yes 0 0 1 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 47.123 47.481 2 0.021526 15161 20181213_JW_Orientia_Karp_3_2 99.688 54.824 69077000 20322000 19071000 11013000 4544600 0 6370000 1592200 6164000 4988 1225 4332 30659;30660;30661;30662;30663;30664;30665 19750;19751 19751 789 1 KYMIEVPLYK Unmodified 1282.6995 0.69953123 1225 Karp_00892 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 50.847 51.154 2 0.0041818 19460 20181213_JW_Orientia_Karp_1_3 125.97 78.771 50503000 11108000 15413000 9750900 2848200 4278500 2588800 4515200 0 4989 1225 4332 30666;30667;30668;30669;30670;30671;30672 19752 19752 1 KYNAYIQGR Unmodified 1111.5774 0.57744226 1223 Karp_00890 yes yes 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 24.518 25.059 2 0.034733 4799 20181213_JW_Orientia_Karp_2_2 57.59 36.126 4707400 0 0 0 1309800 1457600 0 1185800 754180 4990 1223 4333 30673;30674;30675;30676 19753 19753 0 KYNDYVLK Unmodified 1041.5495 0.54949617 1251 Karp_00928 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 30.716 30.996 2 0.0095044 7996 20181213_JW_Orientia_Karp_3_1 171.38 89.144 170530000 63449000 72627000 0 8598200 10633000 15224000 0 0 4991 1251 4334 30677;30678;30679;30680;30681;30682 19754;19755;19756;19757 19757 4 KYNITSANNNGLFVLEVSPNSSWGR Unmodified 2766.3725 0.37254145 1107 Karp_00285 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 63.516 63.684 3 0.00050404 27711 20181213_JW_Orientia_Karp_1_2 96.019 59.342 88259000 24915000 18490000 17343000 965540 15780000 10766000 0 0 4992 1107 4335 30683;30684;30685;30686;30687;30688 19758;19759;19760 19759 3 KYNITSANNNGLFVLEVSPNSSWGR Deamidation (NQ) 2767.3566 0.35655703 1107 Karp_00285 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 1 65.666 65.84 3 1.2723E-08 29162 20181213_JW_Orientia_Karp_1_3 147 92.879 420180000 135450000 106320000 80790000 11367000 57767000 18923000 9561700 0 4993 1107 4335 30689;30690;30691;30692;30693;30694;30695;30696;30697;30698;30699;30700 19761;19762;19763;19764;19765;19766;19767;19768;19769;19770 19765 473;474;475;476;477 10 KYNITSANNNGLFVLEVSPNSSWGR 2 Deamidation (NQ) 2768.3406 0.34057262 1107 Karp_00285 yes yes 0 2 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 2 5 68.091 68.276 3 4.5832E-11 28236 20181213_JW_Orientia_Karp_2_3 158.11 122.57 563150000 68991000 43697000 64677000 17996000 99528000 44428000 137290000 86547000 4994 1107 4335 30701;30702;30703;30704;30705;30706;30707;30708;30709;30710;30711;30712;30713;30714;30715;30716;30717;30718;30719;30720;30721;30722;30723 19771;19772;19773;19774;19775;19776;19777;19778;19779;19780;19781;19782;19783;19784;19785;19786;19787;19788;19789 19783 473;474;475;476;477 19 KYNITSANNNGLFVLEVSPNSSWGR 3 Deamidation (NQ) 2769.3246 0.3245882 1107 Karp_00285 yes yes 0 3 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 1 71.467 71.561 3 0.00066776 32586 20181213_JW_Orientia_Karp_1_2 94.072 65.113 124580000 74689000 12915000 13135000 5661100 0 2905400 14095000 1175000 4995 1107 4335 30724;30725;30726;30727;30728;30729;30730;30731 19790;19791;19792;19793;19794;19795;19796 19791 473;474;475;476;477 7 KYNVSADSIEDKPLAATGLDNDIYR Unmodified 2767.3665 0.36645302 1396 Karp_02152 yes yes 0 0 0 2 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 1 52.037 52.346 3;4 0.0056659 18136 20181213_JW_Orientia_Karp_3_1 92.38 68.498 256890000 15444000 60847000 72156000 34928000 25617000 29196000 18705000 0 4996 1396 4336 30732;30733;30734;30735;30736;30737;30738;30739;30740;30741;30742 19797;19798;19799;19800;19801 19801 5 KYPYWPHQPIENL Unmodified 1683.8409 0.84092717 1526 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 1 By MS/MS By matching 1 1 51.45 51.8 3 0.041069 18498 20181213_JW_Orientia_Karp_2_1 59.265 29.715 51211000 0 0 0 35910000 15301000 0 0 0 4997 1526 4337 30743;30744 19802 19802 0 KYQEAIENFDIAIK Unmodified 1680.8723 0.87228688 1264 Karp_01053 no no 0 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 52.94 53.19 3 0.00021556 19200 20181213_JW_Orientia_Karp_2_2 146.96 83.232 109110000 21710000 28691000 18966000 11976000 13073000 14691000 0 0 4998 1264 4338 30745;30746;30747;30748;30749;30750 19803;19804;19805 19804 3 KYQPLYDR Unmodified 1081.5556 0.55564418 1297 Karp_01188 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 27.138 27.496 2 0.03191 6795 20181213_JW_Orientia_Karp_1_3 113.41 14.782 12641000 2860500 0 4552000 995520 1262200 838510 1648000 484000 4999 1297 4339 30751;30752;30753;30754;30755;30756;30757 19806 19806 1 KYSDLCNIELQGLR Unmodified 1707.8614 0.86140461 1234 Karp_00901 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 50.832 51.174 3 0.026197 17465 20181213_JW_Orientia_Karp_3_1 72.705 31.937 24814000 4521900 0 9429200 0 0 6022500 3833700 1006700 5000 1234 4340 30758;30759;30760;30761;30762 19807 19807 0 KYSDYIQNK Unmodified 1157.5717 0.57168818 1162 Karp_00605 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 27.321 27.679 2 1.2524E-08 6436 20181213_JW_Orientia_Karp_2_1 219.54 142.48 112710000 36868000 16832000 12364000 5877500 8356900 2315200 12696000 17396000 5001 1162 4341 30763;30764;30765;30766;30767;30768;30769;30770 19808;19809;19810;19811;19812;19813;19814;19815 19811 8 KYSQFINFPIYVWSSK Unmodified 2006.0302 0.030184502 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;Q96GW1 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 1 By matching By MS/MS 1 1 68.06 68.364 3 0.01776 26707 20181213_JW_Orientia_Karp_3_2 69.289 36.948 7482000 0 0 3345800 0 0 0 0 4136200 5002 1598 4342 30771;30772 19816 19816 1 KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK Oxidation (M) 3241.6428 0.6428108 1553 V9HW43;P04792;B4DL87 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 64.617 64.824 3 9.7391E-08 25182 20181213_JW_Orientia_Karp_2_2 112.88 88.421 411980000 101730000 80935000 75049000 2274200 67901000 75121000 8963200 0 5003 1553 4343 30773;30774;30775;30776;30777;30778;30779 19817;19818;19819;19820;19821;19822;19823;19824;19825 19822 1167 9 KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK Unmodified 3225.6479 0.64789617 1553 V9HW43;P04792;B4DL87 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.431 67.633 3 1.9233E-10 30189 20181213_JW_Orientia_Karp_1_1 124.16 82.885 412570000 92762000 45725000 103470000 0 43516000 38009000 47063000 42031000 5004 1553 4343 30780;30781;30782;30783;30784;30785;30786 19826;19827;19828;19829;19830;19831;19832;19833 19826 8 LAAAFAVSR Unmodified 904.51305 0.51305109 1710 P55084-2;P55084;F5GZQ3;B4DDC9;B4DY96;D6W539;Q92799 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 43.297 43.597 2 0.0015631 14743 20181213_JW_Orientia_Karp_1_3 123.72 69.753 35716000 14074000 12187000 7347000 0 0 0 2107800 0 5005 1710 4344 30787;30788;30789;30790 19834 19834 1 LAADDFR Unmodified 806.39227 0.39226725 798;790;795;208;924;807;791;555 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9;CON__Q92764;C4AM86;CON__Q497I4;A0A024R1T2;Q92764;CON__Q14525;Q6A165;CON__Q9UE12;CON__Q15323;CON__A2A5Y0;CON__Q14532;CON__A2AB72;CON__O76015;CON__O76013;CON__O76014;CON__REFSEQ:XP_986630;Q14525;Q15323;O76013-2;Q14532;O76014;O76015;O76013;CON__P02533;P02533;CON__Q6IFX2;CON__P19012;CON__A2A4G1;P19012;B3KVF5;B4E204;CON__P02535-1;CON__Q2M2I5;Q2M2I5;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;B4DWU0;B4E2J5;CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;B4DE59;CON__Q04695;CON__Q9QWL7;Q04695;K7EPJ9;B4E2P9;F5GWP8 KRT18;KRT35;KRTHA5;KRTHA7;KRT33B;KRT31;KRT36;KRT32;KRT37;KRT38;KRT14;KRT15;KRT24;KRT16;KRT10;KRT28;KRT17 Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha6;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha8;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 24;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 17 no no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 37.059 37.392 2 0.019792 11070 20181213_JW_Orientia_Karp_3_1 102.71 53.958 1021300000 485600000 197530000 158970000 31417000 74610000 0 73179000 0 + 5006 208;790;791;795;798;555;807;924 4345 30791;30792;30793;30794;30795;30796 19835;19836;19837 19837 3 LAADFENSVR Unmodified 1120.5513 0.55128709 1578 P09914-2;P09914 IFIT1 Interferon-induced protein with tetratricopeptide repeats 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 42.727 42.976 2 0.0021722 14424 20181213_JW_Orientia_Karp_1_3 114.5 68.106 38033000 10044000 15838000 10453000 1698100 0 0 0 0 5007 1578 4346 30797;30798;30799;30800 19838 19838 1 LAAEDPSLVFTVDSETNQMVIK Oxidation (M) 2422.1938 0.19375695 1094 Karp_00243 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.023 67.185 3 3.0432E-06 29486 20181213_JW_Orientia_Karp_1_3 137.99 108.86 49159000 20938000 0 8570200 0 10467000 3573700 0 5609600 5008 1094 4347 30801;30802;30803;30804;30805 19839;19840;19841;19842;19843 19840 607 5 LAAEDPSLVFTVDSETNQMVIK Unmodified 2406.1988 0.19884233 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 71.765 71.855 2;3 1.8216E-12 32868 20181213_JW_Orientia_Karp_1_1 184.51 152.36 195230000 61691000 39911000 52381000 2390700 0 7189000 31667000 0 5009 1094 4347 30806;30807;30808;30809;30810;30811;30812;30813;30814;30815 19844;19845;19846;19847 19844 4 LAAELLPSGK Unmodified 997.5808 0.5807963 1285 Karp_01156 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 47.208 47.477 2 0.0083779 17452 20181213_JW_Orientia_Karp_1_1 96.331 34.369 77877000 36562000 20810000 10578000 5739900 0 4187500 0 0 5010 1285 4348 30816;30817;30818;30819;30820 19848;19849;19850;19851 19848 4 LAAEQELIR Unmodified 1041.5819 0.58185893 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 42.362 42.662 2 0.011031 14356 20181213_JW_Orientia_Karp_1_2 92.051 37.985 59788000 28247000 17534000 10969000 0 0 0 3038000 0 5011 1803 4349 30821;30822;30823;30824 19852 19852 1 LAAFGQLHK Unmodified 983.55525 0.55525025 147;922 A0A024R7C7;Q12906;F4ZW64;A8K590;Q12906-5;Q12906-2;Q12906-3;B4DFG4;F4ZW65;Q59GP7;F4ZW66;Q12906-7;Q12906-4;Q12906-6 ILF3 Interleukin enhancer-binding factor 3 no no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 34.757 35.101 2 0.011105 10402 20181213_JW_Orientia_Karp_1_2 91.906 56.611 33472000 9586300 11139000 8270800 0 399270 0 1924900 2151900 5012 147;922 4350 30825;30826;30827;30828;30829;30830 19853;19854 19853 2 LAALADQWQFLVQK Unmodified 1629.8879 0.88787736 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 70.685 70.815 2 0.01149 31878 20181213_JW_Orientia_Karp_1_3 101.71 60.984 38967000 5655000 11611000 8316400 0 2763200 0 10622000 0 5013 316 4351 30831;30832;30833;30834;30835 19855 19855 1 LAALNPESNTAGLDIFAK Unmodified 1843.968 0.96797818 1491 Q5SRT3;Q53FB0;O00299 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 66.831 67.072 2 1.1377E-16 29960 20181213_JW_Orientia_Karp_1_1 198.81 148.46 131600000 31672000 23414000 28522000 11356000 20191000 9956300 67905 6417300 5014 1491 4352 30836;30837;30838;30839;30840;30841;30842;30843;30844 19856;19857;19858;19859;19860;19861;19862 19856 7 LAALPENPPAIDWAYYK Unmodified 1930.9829 0.98289996 1526 O75947;O75947-2;F5H608;A0PJH2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.062 69.206 2 0.00016717 27233 20181213_JW_Orientia_Karp_3_2 139.77 104 350420000 75468000 80359000 52675000 0 23004000 20507000 73850000 24554000 5015 1526 4353 30845;30846;30847;30848;30849;30850;30851 19863;19864;19865;19866;19867;19868;19869;19870;19871;19872;19873;19874 19874 12 LAALQGR Unmodified 727.43407 0.43407249 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6;H3BUW6;Q59G85;H3BN64;A0A024R9K5;H3BRM1;H3BRF9;Q96K21-4;Q96K21-3;Q96K21-2;Q96K21 CKAP4;ZFYVE19 Cytoskeleton-associated protein 4;Abscission/NoCut checkpoint regulator yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 28.337 28.79 2 0.014826 7329 20181213_JW_Orientia_Karp_1_3 112.27 24.427 18589000 0 11969000 3441400 0 0 0 2442000 735880 5016 224 4354 30852;30853;30854;30855 19875;19876;19877 19875 3 LAAQQEEDAK Unmodified 1101.5302 0.53021729 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 3 2 1 5 21.077 21.495 2 1.5174E-13 4178 20181213_JW_Orientia_Karp_1_2 176.33 133.98 676830000 181160000 216680000 2718600 108010000 71270000 82479000 0 14509000 5017 1371 4355 30856;30857;30858;30859;30860;30861;30862;30863;30864;30865;30866;30867;30868;30869;30870;30871;30872;30873;30874;30875;30876 19878;19879;19880;19881;19882;19883;19884;19885;19886;19887;19888;19889;19890;19891;19892;19893;19894 19880 16 LAAQQEEDAK Deamidation (NQ) 1102.5142 0.51423288 1371 Karp_02001 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 22.311 22.643 2 0.041072 5114 20181213_JW_Orientia_Karp_1_1 131.12 83.929 8291500 1912400 4357000 0 817720 674520 0 0 529900 5018 1371 4355 30877;30878;30879;30880;30881 19895;19896 19895 1849 2 LAAQQEEDAKNQGEGDCK Deamidation (NQ) 1990.8538 0.85381263 1371 Karp_02001 yes yes 0 1 0 1 By MS/MS 1 22.67 22.869 3 0.0082671 4739 20181213_JW_Orientia_Karp_1_3 87.99 50.996 0 0 0 0 0 0 0 0 0 5019 1371 4356 30882 19897 19897 842;1849 1 LAASGEGGLQELSGHFENQK Unmodified 2070.997 0.99704647 1815 Q16643;Q16643-3;Q16643-2;D6RFI1 DBN1 Drebrin yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 47.142 47.495 3 0.038018 16842 20181213_JW_Orientia_Karp_1_3 42.059 15.222 73679000 0 38064000 19635000 0 0 10361000 0 5618000 5020 1815 4357 30883;30884;30885;30886 19898 19898 1 LAATNALLNSLEFTK Unmodified 1604.8774 0.87737225 490 B2RBR9;Q14974;B7Z752;Q14974-2;B7Z5M1;J3KTM9 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 67.388 67.615 2 1.6701E-77 30014 20181213_JW_Orientia_Karp_1_2 290.1 174.81 47577000 17394000 11684000 5112900 0 3717800 0 5272800 4396400 5021 490 4358 30887;30888;30889;30890;30891;30892 19899;19900;19901;19902 19900 4 LAAVALINAAIQK Unmodified 1294.7973 0.79727144 235 A4QPB0;A0A024RC65;P46940;Q6P1N4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 63.462 63.648 2 6.5113E-05 27669 20181213_JW_Orientia_Karp_1_2 168.26 123.1 23167000 10539000 6079300 3818900 396320 2333400 0 0 0 5022 235 4359 30893;30894;30895;30896;30897 19903;19904;19905 19904 3 LAAVDATVNQVLASR Unmodified 1526.8417 0.84165545 1802 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 58.743 59.036 2 3.6014E-37 25049 20181213_JW_Orientia_Karp_1_1 243.4 180.22 238520000 73507000 49281000 80075000 7418000 15358000 8044200 4840800 0 5023 1802 4360 30898;30899;30900;30901;30902;30903;30904 19906;19907;19908 19906 3 LAAVDATVNQVLASR Deamidation (NQ) 1527.8257 0.82567103 1802 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 1 0 0 By MS/MS 1 53.29 53.29 2 0.0042461 21416 20181213_JW_Orientia_Karp_1_1 119.88 65.814 0 0 0 0 0 0 0 0 0 5024 1802 4360 30905 19909 19909 1164 1 LADALQELR Unmodified 1027.5662 0.56620887 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 48.614 48.954 2 8.1019E-05 18441 20181213_JW_Orientia_Karp_1_1 190.62 78.212 356830000 98842000 176260000 0 76072000 5461000 0 194410 0 5025 1543;1544;1851 4361 30906;30907;30908;30909;30910;30911;30912 19910;19911;19912;19913 19910 4 LADDVDLEQVANETHGHVGADLAALCSEAALQAIR Unmodified 3671.785 0.78495179 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 68.938 69.14 4 0.03701 27272 20181213_JW_Orientia_Karp_3_2 35.301 17.366 111480000 0 48043000 13489000 0 0 0 39766000 10187000 5026 1708 4362 30913;30914;30915;30916 19914 19914 1 LADHISAPPVVIQDK Unmodified 1601.8777 0.8777066 1300 Karp_01233 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 1 1 1 1 47.895 48.216 2;3 0.0018951 17319 20181213_JW_Orientia_Karp_1_3 106.76 67.096 424090000 83363000 134700000 105770000 55933000 34518000 2981000 1282000 5538800 5027 1300 4363 30917;30918;30919;30920;30921;30922;30923;30924;30925;30926;30927;30928 19915;19916;19917;19918;19919 19917 5 LADIAGSQSIIPTYVK Unmodified 1674.9192 0.91923707 1101 Karp_00270 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.305 62.578 2 1.3757E-09 27228 20181213_JW_Orientia_Karp_1_1 192.65 121.84 103490000 28748000 20837000 28488000 2360800 7550500 7160500 0 8346700 5028 1101 4364 30929;30930;30931;30932;30933;30934;30935 19920;19921;19922;19923;19924;19925;19926 19920 7 LADIQIEQLNR Unmodified 1311.7147 0.71466402 868 E5RGS4;O60925 PFDN1 Prefoldin subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.054 52.356 2 1.3706E-18 19016 20181213_JW_Orientia_Karp_2_3 235.66 144.95 352480000 48206000 35101000 33532000 96440000 49872000 87938000 0 1393000 5029 868 4365 30936;30937;30938;30939;30940;30941;30942 19927;19928;19929;19930;19931 19931 5 LADIQIEQLNR Deamidation (NQ) 1312.6987 0.69867961 868 E5RGS4;O60925 PFDN1 Prefoldin subunit 1 yes no 0 1 0 0 By MS/MS By matching By matching 1 1 1 53.963 54.313 2 0.018119 19850 20181213_JW_Orientia_Karp_2_1 96.113 55.033 11685000 0 0 0 3461500 4017700 4206100 0 0 5030 868 4365 30943;30944;30945 19932 19932 311 1 LADMGIAIR Oxidation (M) 974.5219 0.52190122 2011 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 41.822 42.094 2 0.0064795 14501 20181213_JW_Orientia_Karp_1_1 98.458 44.253 12590000 10818000 0 0 594210 424130 607650 0 145920 5031 2011 4366 30946;30947;30948;30949;30950 19933 19933 1535 1 LAEEEDLFDSAHPEEGDLDLASESTAHAQSSK Unmodified 3427.5175 0.51754652 346 B7Z5X3;B7ZLP5;A8K329;Q15424;Q15424-4;Q15424-3;B7Z1C7;B7Z2F6;B7Z2Z1;Q15424-2;A0PJ47;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 1 1 1 54.678 54.963 3;4 0.025861 22030 20181213_JW_Orientia_Karp_1_2 41.205 23.822 226870000 39097000 57030000 70496000 15537000 21243000 20769000 0 2694300 5032 346 4367 30951;30952;30953;30954;30955;30956;30957;30958;30959 19934;19935 19935 2 LAEGEEEKPEPDISSEESVSTVEEQENETPPATSSEAEQPK Unmodified 4441.978 0.9780125 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;Q5SWC8;B0QZK8;Q5SSJ5-5 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 1 By MS/MS By matching 1 1 48.905 49.179 4 0.0031349 18095 20181213_JW_Orientia_Karp_1_2 49.297 36.798 20539000 0 9848100 10691000 0 0 0 0 0 5033 1846 4368 30960;30961 19936 19936 1 LAEGLSYESNELEYQEGELLDQEQK Unmodified 2913.3404 0.34035742 1339 Karp_01469 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 65.174 65.351 2;3 1.019E-10 28910 20181213_JW_Orientia_Karp_1_1 188.48 151.97 417170000 85858000 86783000 103280000 0 48598000 48749000 43898000 0 5034 1339 4369 30962;30963;30964;30965;30966;30967;30968;30969;30970;30971;30972 19937;19938;19939;19940;19941;19942;19943;19944;19945 19937 9 LAEGLSYESNELEYQEGELLDQEQK Deamidation (NQ) 2914.3244 0.32437301 1339 Karp_01469 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 66.292 66.493 3 0.0011501 29148 20181213_JW_Orientia_Karp_1_3 96.54 70.534 33188000 16116000 3368400 6533400 2705000 0 0 0 4465200 5035 1339 4369 30973;30974;30975;30976;30977 19946 19946 783 1 LAEIGAPIQGNR Unmodified 1237.6779 0.67788459 908 Q7Z3K9;E9PPJ0;Q13435;E9PJT3;E9PJ04;H0YCG1 DKFZp781L0540;SF3B2 Splicing factor 3B subunit 2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.468 44.761 2 0.018363 15399 20181213_JW_Orientia_Karp_1_3 86.898 56.58 33920000 7223200 15345000 5606000 2752900 0 2494300 0 497870 5036 908 4370 30978;30979;30980;30981;30982;30983 19947 19947 1 LAEISDVWEEMK Unmodified 1448.6857 0.68573166 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 64.742 64.925 2 0.0067 28738 20181213_JW_Orientia_Karp_1_1 118.23 85.004 12873000 6187300 0 6074500 0 0 0 611030 0 5037 506 4371 30984;30985;30986 19948 19948 1 LAELEEALQK Unmodified 1142.6183 0.61830402 799;679 B4E1T1;B4DL32;H0YI76;CON__P13647;P13647 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 47.957 48.282 2 0.00034122 16627 20181213_JW_Orientia_Karp_2_1 140.11 66.448 37878000 0 3920300 0 21044000 1211500 11702000 0 0 + 5038 679;799 4372 30987;30988;30989;30990 19949;19950 19949 2 LAELEEFINGPNNAHIQQVGDR Deamidation (NQ) 2464.1983 0.19826548 1757 Q00610-2;Q00610;J3KS13 CLTC Clathrin heavy chain 1 yes no 0 1 0 0 By MS/MS 1 58.073 58.272 3 0.034882 23955 20181213_JW_Orientia_Karp_1_3 65.47 32.905 0 0 0 0 0 0 0 0 0 5039 1757 4373 30991 19951 19951 1964;1965 1 LAEQAER Unmodified 815.41373 0.41373097 1728;824;1650;556;1651;1635;45 B4DE78;P61981;B3KNB4;V9HWD6;P31946-2;P31946;B5BU24;Q4VY20;Q4VY19;Q59EQ2;P31947-2;P31947;V9HW98;P62258;G9K389;G9K388;B4DJF2;I3L3T1;B4DJB0;I3L0W5;D0PNI1;P63104;E7EX29;E7ESK7;E5RGE1;E5RIR4;E9PD24;E7EVZ2;P27348;E9PG15;Q53RR5;A0A024R1K7;Q04917;B2R6N6;F8WEB6;A2IDB1 YWHAG;HEL-S-1;YWHAB;SFN;HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAZ;YWHAQ;YWHAH 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein eta no no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 18.659 18.883 2 0.018937 3382 20181213_JW_Orientia_Karp_3_1 103.83 7.7853 41685000 27196000 7122100 5923900 0 0 0 1442900 0 5040 556;1650;1651;1728;824;1635;45 4374 30992;30993;30994;30995;30996 19952;19953;19954 19954 3 LAFTDVSIK Unmodified 992.55425 0.5542472 1611 P20591;F8W8T1;Q8NAA8 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 53.942 54.125 2 0.00080175 21513 20181213_JW_Orientia_Karp_1_2 140.14 53.306 95731000 65329000 18958000 11444000 0 0 0 0 0 5041 1611 4375 30997;30998;30999 19955;19956;19957 19956 3 LAGNDAVISMTILK Unmodified 1444.796 0.79595081 1139 Karp_00451 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 63.579 63.847 2 0.0016923 25259 20181213_JW_Orientia_Karp_2_1 128.57 73.481 14827000 6542800 5396400 0 405860 0 1873100 46552 561950 5042 1139 4376 31000;31001;31002;31003;31004;31005 19958;19959 19959 2 LAGTNFELGK Unmodified 1048.5553 0.55530983 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.868 46.141 2 5.8934E-06 15220 20181213_JW_Orientia_Karp_2_2 169.65 116.72 383750000 114830000 103650000 131750000 8263700 10494000 12293000 0 2474500 5043 1121 4377 31006;31007;31008;31009;31010;31011;31012 19960;19961;19962;19963;19964;19965;19966 19964 7 LAHSQIALSALTVTDAAQQFDVK Unmodified 2426.2805 0.28053854 1414 Karp_02240 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 63.227 63.463 3 1.7706E-07 27572 20181213_JW_Orientia_Karp_1_2 140.47 106.07 274540000 70487000 69307000 64951000 5927100 35738000 27807000 321500 0 5044 1414 4378 31013;31014;31015;31016;31017;31018;31019 19967;19968;19969;19970;19971 19968 5 LAILGIHNEVSK Unmodified 1292.7452 0.74523587 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;H7C5W8 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.255 45.438 3 0.026389 16319 20181213_JW_Orientia_Karp_1_1 61.11 9.1836 358300000 165140000 165080000 28081000 0 0 0 0 0 5045 133 4379 31020;31021;31022 19972;19973;19974 19972 3 LAILYAK Unmodified 790.49528 0.49527576 676 B4E0U6;P50502;Q3KNR6;Q1XBU6;B7ZA40;Q0IJ56;Q8NFI4;H7C3I1;F6VDH7;Q8IZP2 ST13;ST13P5;ST13P4 Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.28 46.51 2 0.018395 16323 20181213_JW_Orientia_Karp_1_3 104.94 48.69 48613000 11043000 16226000 15098000 2596400 3650200 0 0 0 5046 676 4380 31023;31024;31025;31026;31027;31028 19975;19976;19977;19978 19975 4 LAIPQQSDFHNNRYQK 5 Deamidation (NQ) 1962.8959 0.89593544 686 B4E2Y8;B4DG86;A2VDG3;E9PEK4;Q59HE0;P07333-2;P07333 CSF1R Macrophage colony-stimulating factor 1 receptor yes no 0 5 0 1 By MS/MS 1 49.61 49.761 3 0.037257 17327 20181213_JW_Orientia_Karp_2_2 47.532 26.795 0 0 0 0 0 0 0 0 0 5047 686 4381 31029 19979 19979 1578;1579;1580 1 LALDLEIATYR Unmodified 1276.7027 0.70270235 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 4 4 3 65.442 65.653 1;2 1.0849E-05 28653 20181213_JW_Orientia_Karp_1_2 174.41 0 477140000 49137000 31422000 23898000 21717000 223990000 104400000 22577000 0 + 5048 995;996 4382 31030;31031;31032;31033;31034;31035;31036;31037;31038;31039;31040;31041;31042;31043;31044 19980;19981;19982;19983;19984;19985;19986;19987;19988;19989 19981 9 LALDMEINAYR Oxidation (M) 1323.6493 0.64928657 1044 J9JID7;Q03252 LMNB2 Lamin-B2 yes no 0 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.46 52.852 2 0.0091292 18226 20181213_JW_Orientia_Karp_3_2 94.309 50.106 12851000 0 2870400 6067100 0 2881000 0 741960 290690 5049 1044 4383 31045;31046;31047;31048;31049 19990 19990 569 1 LALDVEIATYR Unmodified 1262.6871 0.68705229 804;1657;799;341;679;793;805;796 CON__P12035;P12035;CON__Q01546;CON__P07744;H0YID6;CON__P35908;P35908;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__O95678;O95678;B4E1T1;B4DL32;H0YI76;CON__P04259;P04259;B4DKV4;CON__P13647;P13647;CON__P48668;P48668;B2R853;B4DRY0 KRT3;KRT79;KRT2;KRT6A;KRT75;KRT5;KRT6B;KRT6C Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.955 61.242 2 4.2408E-05 26124 20181213_JW_Orientia_Karp_1_2 174.41 67.732 152340000 32126000 9947300 17574000 6814500 35722000 32509000 0 17643000 + 5050 796;804;1657;341;679;793;799;805 4384 31050;31051;31052;31053;31054;31055;31056 19991;19992;19993;19994;19995;19996;19997 19992 7 LALHAIIDAEDSR Unmodified 1422.7467 0.74669243 1430 Karp_02387 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 48.526 48.796 3 0.0056375 17953 20181213_JW_Orientia_Karp_1_2 123.26 62.627 68116000 15469000 26373000 7800700 11967000 0 6505900 0 0 5051 1430 4385 31057;31058;31059;31060;31061 19998;19999;20000;20001;20002 19999 5 LALQALTEK Unmodified 985.5808 0.5807963 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 47.369 47.671 2 0.0021502 16955 20181213_JW_Orientia_Karp_1_3 117.81 25.344 201570000 59323000 73648000 39306000 6094600 5475000 13019000 0 4703200 5052 224 4386 31062;31063;31064;31065;31066;31067;31068 20003;20004;20005;20006;20007;20008 20005 6 LALTGITYGPELK Unmodified 1374.7759 0.7758673 1285 Karp_01156 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.451 60.738 2 5.3726E-12 25482 20181213_JW_Orientia_Karp_1_3 227.36 182.72 157400000 34045000 53500000 46465000 5176200 5238600 7285900 0 5687100 5053 1285 4387 31069;31070;31071;31072;31073;31074;31075 20009;20010;20011;20012;20013;20014;20015 20011 7 LAMHQIPQNSDQNLLTQNNIR Oxidation (M) 2463.2289 0.2288541 1116 Karp_00304 yes yes 0 0 1 0 By MS/MS By matching By matching 1 1 1 43.277 43.677 3 0.020495 14865 20181213_JW_Orientia_Karp_1_2 68.168 40.491 26850000 0 8874000 15955000 0 0 0 2021000 0 5054 1116 4388 31076;31077;31078 20016 20016 634 1 LANAIVLFNK Unmodified 1101.6546 0.65462995 1190 Karp_00705 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 56.736 56.936 2 0.0002767 23833 20181213_JW_Orientia_Karp_1_1 163.99 125.02 19652000 12030000 6428500 0 0 0 1193000 0 0 5055 1190 4389 31079;31080;31081 20017 20017 1 LANFFEK Unmodified 867.44905 0.44905385 1201 Karp_00820 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 46.885 47.205 2 0.011532 15949 20181213_JW_Orientia_Karp_2_1 139.68 84.915 446210000 90812000 121230000 71042000 54566000 57084000 45573000 174970 5727300 5056 1201 4390 31082;31083;31084;31085;31086;31087;31088;31089 20018;20019;20020;20021;20022 20020 5 LANPVYHIHLGK Unmodified 1360.7616 0.76155464 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 39.646 39.821 3 0.020473 12820 20181213_JW_Orientia_Karp_1_2 67.385 41.267 102640000 58357000 23909000 13954000 0 6418800 0 0 0 5057 1118 4391 31090;31091;31092;31093 20023;20024;20025 20024 3 LANSFISAVENDK Unmodified 1406.7042 0.70415892 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.32 53.713 2 1.6337E-11 21272 20181213_JW_Orientia_Karp_1_2 204.32 137.12 90070000 37901000 22812000 19846000 7910700 0 0 686730 913530 5058 1162 4392 31094;31095;31096;31097;31098;31099;31100 20026;20027;20028;20029;20030 20027 5 LANSFISAVENDK Deamidation (NQ) 1407.6882 0.6881745 1162 Karp_00605 yes yes 0 1 0 0 By MS/MS By matching By matching By matching 1 1 1 1 54.683 54.858 2 0.0020498 22373 20181213_JW_Orientia_Karp_1_1 138.02 65.413 48850000 18129000 0 19749000 0 6087900 4884500 0 0 5059 1162 4392 31101;31102;31103;31104 20031 20031 551 1 LANVMMGPYR 2 Oxidation (M) 1182.5525 0.55254942 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 34.273 34.595 2 0.00025102 10538 20181213_JW_Orientia_Karp_1_1 138.54 89.127 59271000 19800000 13624000 11655000 4436400 2052100 2071100 5632200 0 5060 19 4393 31105;31106;31107;31108;31109;31110;31111 20032;20033;20034;20035;20036;20037 20032 8;9 6 LANVMMGPYR Oxidation (M) 1166.5576 0.55763479 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 1 0 By MS/MS By MS/MS 1 1 42.455 42.88 2 0.0099762 13785 20181213_JW_Orientia_Karp_3_1 89.698 56.32 17759000 0 0 12714000 0 0 0 5045600 0 5061 19 4393 31112;31113 20038;20039 20039 8;9 2 LAPDDQELAIAAELCK Unmodified 1755.8713 0.8713006 1370 Karp_01999 yes yes 0 0 0 0 By MS/MS 1 64.112 64.211 2 0.016782 27645 20181213_JW_Orientia_Karp_1_3 121.28 89.522 0 0 0 0 0 0 0 0 0 5062 1370 4394 31114 20040 20040 1 LAPDYDALDVANK Unmodified 1403.6933 0.69325988 412 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7;B9EJE3 RPL23A;RPL23AL 60S ribosomal protein L23a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.548 52.894 2 5.6546E-05 19292 20181213_JW_Orientia_Karp_2_3 169.82 117.43 1828100000 419130000 557670000 423980000 114930000 115500000 97359000 79948000 19608000 5063 412 4395 31115;31116;31117;31118;31119;31120;31121;31122 20041;20042;20043;20044;20045;20046;20047;20048 20046 8 LAPEYEAAATR Unmodified 1190.5932 0.5931519 516;999 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98;H7BZJ3 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 no no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 36.556 36.844 2 0.039667 10586 20181213_JW_Orientia_Karp_2_1 82.494 44.683 53361000 18325000 27518000 0 2716400 4802200 0 0 0 5064 516;999 4396 31123;31124;31125;31126 20049 20049 0 LAPITSDPTEATAVGAVEASFK Unmodified 2174.1107 0.11067925 1597 V9HWB8;P14618;P14618-3;B4DNK4;Q8WUW7;Q9UKK4;Q9UK31 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 67.646 67.848 2;3 1.5804E-12 30395 20181213_JW_Orientia_Karp_1_1 169.64 123.75 151340000 44225000 22385000 37074000 0 23913000 12498000 5136400 6108700 5065 1597 4397 31127;31128;31129;31130;31131;31132;31133;31134;31135;31136;31137;31138;31139;31140 20050;20051;20052;20053;20054;20055 20050 6 LAPLNEGGTAELLNK Unmodified 1538.8304 0.83042206 1980 Q9NQ48;H7C488;Q9NQ48-2;Q9NQ48-3 LZTFL1 Leucine zipper transcription factor-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.035 53.379 2 0.0036314 19283 20181213_JW_Orientia_Karp_2_2 113.95 51.643 38154000 8453200 0 9350000 6111500 6860800 3873600 2525500 979040 5066 1980 4398 31141;31142;31143;31144;31145;31146;31147 20056;20057;20058;20059;20060;20061 20059 6 LAQALHEMR Oxidation (M) 1083.5495 0.54951295 1613 P20700;E9PBF6;Q6DC98;B4DZT3 LMNB1 Lamin-B1 yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 21.447 21.799 2 0.0087313 4722 20181213_JW_Orientia_Karp_1_1 93.111 49.864 12907000 1416700 1620600 4263600 1440200 874660 1415400 978900 897400 5067 1613 4399 31148;31149;31150;31151;31152;31153;31154;31155 20062;20063 20062 1234 2 LAQDPFPLYPGEVLEK Unmodified 1814.9455 0.94545182 1800 X5D7K9;X5DNU0;X5D2M8;Q14764;B4DXN0;X5D7S8;X5DP24;H3BUK7;H3BNF6;H3BRL2;H3BQK6;X5DP17;X5D7R7 MVP Major vault protein yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 70.537 70.654 2 0.0034755 31697 20181213_JW_Orientia_Karp_1_3 109.07 54.93 29906000 15398000 0 10199000 0 0 0 4309000 0 5068 1800 4400 31156;31157;31158 20064 20064 1 LAQENMDLFK Unmodified 1207.5907 0.59070906 684 G3XAM7;B4E2G8;P35221;P35221-2;B4DKT9;B4DU00;P35221-3;B3KSR8;E5RJP7;E5RGD2 CTNNA1 Catenin alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 51.507 51.77 2 0.00069672 20117 20181213_JW_Orientia_Karp_1_2 130.41 82.453 106060000 38209000 34253000 0 21537000 12066000 0 0 0 5069 684 4401 31159;31160;31161;31162 20065;20066 20066 2 LAQGHTTVDELAR Unmodified 1409.7263 0.72629134 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 32.34 32.662 3 0.0002362 9641 20181213_JW_Orientia_Karp_1_1 149.69 89.002 72930000 22311000 26611000 15239000 2091400 2298700 809830 3568600 0 5070 1803 4402 31163;31164;31165;31166;31167;31168;31169 20067;20068;20069;20070;20071 20067 5 LAQQGNLLEK 2 Deamidation (NQ) 1114.587 0.58700389 2005 Q9UPM8-2;Q9UPM8;H0YK94;H0YK95;H0YL95;B4DM48 AP4E1 AP-4 complex subunit epsilon-1 yes no 0 2 0 0 By MS/MS 1 15.328 15.678 3 0.028387 2692 20181213_JW_Orientia_Karp_1_2 70.256 11.103 0 0 0 0 0 0 0 0 0 5071 2005 4403 31170 20072 20072 2110;2111 1 LASDLLEWIR Unmodified 1214.6659 0.66592292 1509;133 O43707;O43707-2;Q96BG6;B4DSX0;K7EJH8;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;Q86TX4;G3V2W4 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.461 72.52 2 8.9788E-13 29289 20181213_JW_Orientia_Karp_3_2 232.46 111.59 380160000 120560000 60971000 53182000 0 16854000 16237000 107000000 5349600 5072 1509;133 4404 31171;31172;31173;31174;31175;31176;31177 20073;20074;20075;20076;20077;20078;20079 20079 7 LASDVPLPQIGDLVDVYVEK Unmodified 2169.1569 0.15690116 1095 Karp_00244 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 75.212 75.219 2 2.4473E-11 35056 20181213_JW_Orientia_Karp_1_1 167.18 135.96 437920000 142200000 78379000 99539000 6415900 36700000 21442000 53241000 0 5073 1095 4405 31178;31179;31180;31181;31182;31183;31184 20080;20081;20082;20083;20084;20085;20086 20080 7 LASIVTPR Unmodified 855.5178 0.51780212 1460 L0R5A1 CSF2RB yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 3 2 2 3 2 39.525 39.886 2 0.0034657 12850 20181213_JW_Orientia_Karp_2_3 153.73 67.214 174950000000 28269000000 22907000000 25757000000 22635000000 42317000000 3688400000 23405000000 5975200000 5074 1460 4406 31185;31186;31187;31188;31189;31190;31191;31192;31193;31194;31195;31196;31197;31198;31199;31200;31201 20087;20088;20089;20090;20091;20092;20093;20094;20095 20094 8 LASNNGVGSAISSTTNK Deamidation (NQ) 1620.7955 0.79549312 1416 Karp_02253 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 39.782 40.053 2 6.0727E-06 13405 20181213_JW_Orientia_Karp_1_1 150.9 78.025 38850000 10178000 12474000 9637500 0 2449200 0 4112000 0 5075 1416 4407 31202;31203;31204;31205;31206 20096;20097 20096 936 2 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR Unmodified 3557.6791 0.67914932 474 B2R8R5;Q13263;Q13263-2;M0R0K9 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS 1 61.846 61.846 3 3.6167E-05 26857 20181213_JW_Orientia_Karp_1_1 76.937 41.722 0 0 0 0 0 0 0 0 0 5076 474 4408 31207 20098 20098 1 LASSVLR Unmodified 744.44939 0.4493882 1038 J3QR09;J3KTE4;Q53G49;P84098;J3QL15 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 32.373 32.556 2 0.017678 9156 20181213_JW_Orientia_Karp_1_2 106.42 37.931 16779000 6825700 7433700 2519700 0 0 0 0 0 5077 1038 4409 31208;31209;31210 20099 20099 1 LASTLVHLGEYQAAVDGAR Unmodified 1970.0221 0.022139011 1757 Q00610-2;Q00610;J3KS13 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 52.466 52.768 3 0.00017478 21018 20181213_JW_Orientia_Karp_1_1 118.23 89.277 157810000 49422000 39437000 51325000 5434900 7913600 4022100 0 250970 5078 1757 4410 31211;31212;31213;31214;31215;31216;31217 20100;20101 20100 2 LASTVSYSLYPIGQGK Unmodified 1682.8879 0.88793694 1430 Karp_02387 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 57.463 57.77 2 8.7315E-10 23858 20181213_JW_Orientia_Karp_1_2 193.62 132.03 94028000 36748000 13377000 20454000 5482300 11322000 6306800 338260 0 5079 1430 4411 31218;31219;31220;31221;31222;31223;31224;31225 20102;20103;20104;20105;20106;20107 20103 6 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK Unmodified 2773.4246 0.4246366 238 A0A024RCA7;P05387;H0YDD8 RPLP2 60S acidic ribosomal protein P2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 1 54 54.311 3 3.0004E-16 19284 20181213_JW_Orientia_Karp_2_1 142.96 115.49 8692900000 1736800000 3081300000 1859600000 630790000 717200000 657680000 2973100 6640800 5080 238 4412 31226;31227;31228;31229;31230;31231;31232;31233;31234;31235;31236;31237;31238;31239 20108;20109;20110;20111;20112;20113;20114;20115;20116;20117;20118;20119;20120;20121 20116 14 LASVPGSQTVVVK Unmodified 1283.7449 0.74490152 738 Q96N83;B7ZKQ8;O00592-2;O00592 PODXL Podocalyxin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 43.815 44.115 2 0.0024803 15640 20181213_JW_Orientia_Karp_1_1 121.29 64.856 37815000 8477100 13923000 10961000 988740 870040 0 2595100 0 5081 738 4413 31240;31241;31242;31243;31244;31245 20122;20123 20122 2 LASYLDK Unmodified 808.43307 0.43306943 1653;798;790;795;807 P35527;CON__P35527;CON__Q99456;Q99456;CON__P02533;P02533;CON__P19012;CON__A2A4G1;P19012;B4E204;CON__P08779;P08779;B4DWU0;B4E2J5;CON__P13645;P13645;CON__Q04695;CON__Q9QWL7;Q04695;K7EPJ9;B4E2P9;B4DJM5 KRT9;KRT12;KRT14;KRT15;KRT16;KRT10;KRT17 Keratin, type I cytoskeletal 9;Keratin, type I cytoskeletal 12;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 17 no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 34.267 34.582 2 0.016863 9352 20181213_JW_Orientia_Karp_2_1 108.09 25.782 2005600000 520790000 563470000 316570000 156930000 166290000 48703000 0 232860000 + 5082 1653;790;795;798;807 4414 31246;31247;31248;31249;31250;31251;31252 20124;20125;20126 20125 3 LASYLDKVQALEEANNDLENK Unmodified 2376.1809 0.18088408 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.352 57.746 3 8.8186E-06 21994 20181213_JW_Orientia_Karp_2_3 145.17 96.492 109830000 0 11523000 10140000 16132000 23189000 16485000 1018300 31346000 + 5083 1653 4415 31253;31254;31255;31256;31257;31258;31259 20127;20128;20129;20130;20131;20132;20133 20131 7 LASYLDR Unmodified 836.43922 0.43921744 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 36.214 36.587 2 0.024832 11654 20181213_JW_Orientia_Karp_1_1 96.19 40.686 73989000 29623000 25431000 8902000 2435400 0 1632900 3857000 2107800 5084 208 4416 31260;31261;31262;31263;31264;31265;31266 20134 20134 1 LATALQK Unmodified 743.45414 0.45413923 494;649;859 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-3;P06753-5;P06753-6;Q5VU61;J3KN67;P06753-4;M1VPF4;D6R904;P06753;H0YL80;K7EP68;Q8NAH0;B4DVY2;V9HW56;P67936;B4DTB1;K7ERG3;K7ENT6;B4DGC2;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951-3;P67936-2;P07951-2;P07951;B4E3P1;H0YL52;D9YZV5;D9YZV4;P09493-9;P09493-4;P09493-3;P09493-10;P09493;H0YKX5;H0YKP3;Q8TCG4;C9IZA2;H0YNC7;Q15657;Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;A0A024R5W6;Q59GR8;Q6ZN40;P09493-2;P09493-5;P09493-8;P09493-7;P09493-6 DKFZp686J1372;TPM3;TPM3-ROS1;TPM1;TPM4;HEL-S-82p;HEL-S-108;HEL-S-273;TPM2;TPM2b Tropomyosin alpha-3 chain;Tyrosine-protein kinase receptor;Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 27.114 27.472 2 0.012366 6305 20181213_JW_Orientia_Karp_2_1 128.86 14.275 81392000 8525400 14336000 8319800 8623900 8899500 9868700 5839400 16980000 + 5085 494;649;859 4417 31267;31268;31269;31270;31271;31272;31273;31274 20135;20136;20137 20137 3 LATEAVQLALVHDNLTDLK Unmodified 2063.1263 0.12626973 1346 Karp_01522 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 1 2 62.563 62.841 2;3 0.00046066 27388 20181213_JW_Orientia_Karp_1_1 110.04 86.609 1587400000 517630000 253980000 429430000 22489000 195670000 126920000 99373 41216000 5086 1346 4418 31275;31276;31277;31278;31279;31280;31281;31282;31283;31284;31285;31286;31287;31288;31289 20138;20139;20140;20141;20142;20143;20144 20138 7 LATEAVQLALVHDNLTDLK Deamidation (NQ) 2064.1103 0.11028532 1346 Karp_01522 yes yes 0 1 0 0 By matching By matching By MS/MS By matching 1 1 1 1 66.715 66.814 3 0.018454 29287 20181213_JW_Orientia_Karp_1_3 82.121 66.699 29055000 11421000 7723700 7355500 0 0 2554300 0 0 5087 1346 4418 31290;31291;31292;31293 20145 20145 790 1 LATQLTGPVMPVR Oxidation (M) 1397.7701 0.77007041 357 Q6NZ55;A8K4C8;P26373;P26373-2;O60250 RPL13 60S ribosomal protein L13 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.892 48.237 2 4.0011E-17 17638 20181213_JW_Orientia_Karp_1_2 213.35 125.71 238240000 40686000 77195000 44941000 24768000 11750000 18812000 1116800 18972000 5088 357 4419 31294;31295;31296;31297;31298;31299;31300;31301 20146;20147;20148;20149;20150 20147 248 5 LATQLTGPVMPVR Unmodified 1381.7752 0.77515579 357 Q6NZ55;A8K4C8;P26373;P26373-2;O60250 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 54.681 54.947 2 0.00072964 21751 20181213_JW_Orientia_Karp_1_3 158.56 97.735 224900000 37289000 44692000 128150000 4460600 3668300 6635800 0 0 5089 357 4419 31302;31303;31304;31305;31306;31307 20151;20152;20153;20154;20155 20153 5 LATQSNEITIPVTFESR Unmodified 1904.9844 0.98435652 1553 V9HW43;P04792;B4DL87;C9J3N8 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 2 2 3 1 1 1 2 62.789 63.103 2 4.9862E-54 27548 20181213_JW_Orientia_Karp_1_1 309.26 238.32 7862700000 2174000000 1371700000 1357900000 165300000 1158100000 1084400000 4414400 546850000 5090 1553 4420 31308;31309;31310;31311;31312;31313;31314;31315;31316;31317;31318;31319;31320 20156;20157;20158;20159;20160;20161 20156 6 LATQSNEITIPVTFESR Deamidation (NQ) 1905.9684 0.96837211 1553 V9HW43;P04792;B4DL87;C9J3N8 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 2 6 3 3 2 65.447 65.644 2;3 9.8454E-54 26344 20181213_JW_Orientia_Karp_2_3 265.12 174.21 2573200000 804480000 479470000 395250000 72773000 304480000 204910000 181710000 130100000 5091 1553 4420 31321;31322;31323;31324;31325;31326;31327;31328;31329;31330;31331;31332;31333;31334;31335;31336;31337;31338;31339;31340;31341;31342;31343;31344;31345;31346;31347 20162;20163;20164;20165;20166;20167;20168;20169;20170;20171;20172;20173;20174;20175 20171 1039 13 LATQSNEITIPVTFESRAQLGGPEAAK Unmodified 2827.4716 0.47158679 1553 V9HW43;P04792;B4DL87;C9J3N8 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 58.957 59.217 3 0.024401 22477 20181213_JW_Orientia_Karp_2_2 54.728 20.819 28375000 5968100 6141000 0 4501500 6591600 5173000 0 0 5092 1553 4421 31348;31349;31350;31351;31352 20176 20176 1 LAVECYR Unmodified 909.43784 0.43783723 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 34.69 34.98 2 0.017678 9985 20181213_JW_Orientia_Karp_3_1 106.42 35.037 129960000 34093000 31562000 45319000 0 6797100 0 12191000 0 5093 1449 4422 31353;31354;31355;31356;31357 20177;20178;20179;20180;20181 20181 5 LAVHPSGVALQDR Unmodified 1361.7415 0.74154747 1558 P05161 ISG15 Ubiquitin-like protein ISG15 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 1 37.475 37.808 3 0.010816 11291 20181213_JW_Orientia_Karp_3_1 117.27 68.829 171940000 99193000 1248800 48773000 2821900 8920000 0 10986000 0 5094 1558 4423 31358;31359;31360;31361;31362;31363;31364;31365 20182;20183;20184;20185;20186;20187 20187 6 LAVNMVPFPR Oxidation (M) 1158.6219 0.62194961 1566;1747;1550;1964;1823 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;Q3ZCM7;A0A075B736;Q5SQY0;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB8;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 53.707 53.947 2 4.8903E-07 21537 20181213_JW_Orientia_Karp_1_2 190.52 130.4 500600000 166350000 125640000 138030000 14851000 12372000 43362000 0 0 5095 1550;1566;1747;1823;1964 4424 31366;31367;31368;31369;31370;31371;31372;31373;31374;31375 20188;20189;20190;20191;20192;20193;20194 20191 1155 6 LAVNMVPFPR Unmodified 1142.627 0.62703499 1566;1747;1550;1964;1823 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;Q3ZCM7;A0A075B736;Q5SQY0;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB8;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.817 61.077 2 2.0743E-08 26054 20181213_JW_Orientia_Karp_1_2 205.58 135.33 301240000 106630000 40797000 106630000 0 8478500 14517000 0 24193000 5096 1550;1566;1747;1823;1964 4424 31376;31377;31378;31379;31380;31381;31382 20195;20196;20197;20198;20199;20200;20201 20196 7 LAVNNIAGIEEVNMIK Unmodified 1726.9288 0.9287559 1870 Q6PJ77;Q96K17;E9PL10 BTF3L4 Transcription factor BTF3;Transcription factor BTF3 homolog 4 yes no 0 0 0 0 By MS/MS 1 64.198 64.198 2 0.006357 28311 20181213_JW_Orientia_Karp_1_1 114.72 70.178 0 0 0 0 0 0 0 0 0 5097 1870 4425 31383 20202 20202 1 LAVNNIAGIEEVNMIK Oxidation (M);Deamidation (NQ) 1743.9077 0.9076861 1870 Q6PJ77;Q96K17;E9PL10 BTF3L4 Transcription factor BTF3;Transcription factor BTF3 homolog 4 yes no 0 1 1 0 By matching By matching By MS/MS By matching 1 1 1 1 61.326 61.704 2 0.00059492 21476 20181213_JW_Orientia_Karp_3_1 137.62 36.093 6906300 4333900 0 0 179260 0 0 1239000 1154200 5098 1870 4425 31384;31385;31386;31387 20203 20203 1183 1481 1 LAVYIDK Unmodified 820.46945 0.46945494 1613 P20700;E9PBF6;Q6DC98 LMNB1 Lamin-B1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 41.837 42.139 2 0.026322 13907 20181213_JW_Orientia_Karp_1_3 94.262 43.225 52766000 13589000 16722000 10854000 0 1996000 1859500 7689500 56074 5099 1613 4426 31388;31389;31390;31391;31392;31393;31394 20204 20204 1 LAVYIDR Unmodified 848.4756 0.47560295 1543;1544 P02545;P02545-3;P02545-6;Q5I6Y5;Q8N519;W5X314;P02545-2;W8QEH3;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 43.298 43.568 2 0.011712 15308 20181213_JW_Orientia_Karp_1_1 121.29 41.839 159430000 49776000 70580000 24832000 0 3736600 0 10504000 0 5100 1543;1544 4427 31395;31396;31397;31398;31399 20205;20206 20205 2 LAWDQHAASKR Deamidation (NQ) 1282.6418 0.64183343 2059 yes yes 0 1 0 1 By MS/MS 1 31.348 31.348 3 0.038128 9005 20181213_JW_Orientia_Karp_1_1 51.762 20.04 44084000 44084000 0 0 0 0 0 0 0 + 5101 2059 4428 31400 20207 20207 2123 0 LAYINPDLALEEK Unmodified 1487.7872 0.78716026 377 V9HW72;A8K690;P31948;P31948-2;P31948-3 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 60.321 60.608 2 0.00067484 23484 20181213_JW_Orientia_Karp_2_3 150.51 91.358 218800000 31009000 46924000 42228000 35543000 25606000 29213000 0 8281900 5102 377 4429 31401;31402;31403;31404;31405;31406;31407;31408 20208;20209 20208 2 LAYVAPTIPR Unmodified 1099.639 0.63897988 482 B2RAH5;O14974-5;O14974-4;O14974-3;O14974;F8VZN8;A0A024RBF1;O14974-2;H0YIS4;H0YHI8 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 51.283 51.584 2 0.031973 18347 20181213_JW_Orientia_Karp_2_1 76.827 47.657 84985000 20556000 15304000 7027900 23586000 8396500 9802600 0 311120 5103 482 4430 31409;31410;31411;31412;31413;31414;31415 20210;20211 20210 2 LCDIVGTLNGK Deamidation (NQ) 1189.6013 0.60127375 1412 Karp_02231 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 51.168 51.48 2 4.4045E-05 19697 20181213_JW_Orientia_Karp_1_2 167.12 111.57 45795000 0 12187000 18216000 0 5570200 9202300 0 620140 5104 1412 4431 31416;31417;31418;31419;31420;31421 20212;20213;20214;20215;20216 20212 926 5 LCIIPPEFAVHSR Unmodified 1537.8075 0.80751855 1416 Karp_02253 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 57.481 57.775 3 0.0027757 23640 20181213_JW_Orientia_Karp_1_3 102.97 53.989 41438000 12458000 0 8353200 1800400 6045300 9422200 0 3358400 5105 1416 4432 31422;31423;31424;31425;31426;31427 20217;20218;20219;20220;20221;20222 20218 5 LCKPNPWEVLAEK Unmodified 1582.8177 0.81774888 1095 Karp_00244 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 51.234 51.536 3 0.0062699 20265 20181213_JW_Orientia_Karp_1_1 107.46 69.811 78940000 21215000 22290000 13080000 10473000 5522600 6205700 0 153130 5106 1095 4433 31428;31429;31430;31431;31432;31433;31434 20223;20224;20225 20223 3 LCLLQFCQESK Unmodified 1424.6792 0.67920649 1147 Karp_00502 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 57.876 58.179 2 0.00073589 24100 20181213_JW_Orientia_Karp_1_2 133.23 76.868 16168000 6834100 5730400 0 0 2456600 0 0 1147100 5107 1147 4434 31435;31436;31437;31438 20226;20227 20226 2 LCMGSGLNLCEPNNK Unmodified 1705.7586 0.7585958 578 B4DI57;Q53H26;Q06AH7;P02787;B4E1B2;B4DHZ6;H7C5E8 TF Serotransferrin yes no 0 0 0 0 By MS/MS 1 50.922 50.922 2 8.6944E-05 19792 20181213_JW_Orientia_Karp_1_1 151.16 110.44 12147000 12147000 0 0 0 0 0 0 0 5108 578 4435 31439 20228 20228 1 LCNECADGSFHLSTR Unmodified 1765.7512 0.75120224 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 38.73 39.063 3 0.021104 12421 20181213_JW_Orientia_Karp_1_2 93.909 57.617 131590000 37934000 57012000 19058000 4128500 0 2424600 11029000 0 5109 195 4436 31440;31441;31442;31443;31444;31445 20229;20230;20231 20230 3 LCQLCAGK Unmodified 948.45211 0.45210709 808 CON__Q29443;CON__Q0IIK2;CON__Q2HJF0 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 28.198 28.499 2 0.025304 6808 20181213_JW_Orientia_Karp_2_3 85.265 37.091 2884600 1224900 0 0 0 0 737400 922270 0 + 5110 808 4437 31446;31447;31448 20232;20233 20232 2 LCSIVNTLNGK Deamidation (NQ) 1218.6278 0.62782285 1411 Karp_02230 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 1 2 47.887 48.221 2 0.00052082 16566 20181213_JW_Orientia_Karp_2_1 150.81 81.964 79361000 18087000 20817000 11279000 8140300 4099000 5454700 39561 11443000 5111 1411 4438 31449;31450;31451;31452;31453;31454;31455;31456;31457;31458 20234;20235;20236;20237;20238;20239;20240 20237 925 7 LCVLHEK Unmodified 897.47422 0.47422274 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 25.116 25.511 2 0.0094639 5620 20181213_JW_Orientia_Karp_2_1 148.21 65.754 102670000 0 10785000 4652200 13842000 11946000 6203600 28621000 26622000 + 5112 792 4439 31459;31460;31461;31462;31463;31464;31465;31466 20241;20242;20243;20244;20245;20246;20247 20244 7 LCYVALDFEQEMATAASSSSLEK Oxidation (M) 2565.1615 0.16147054 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q6S8J3;Q96FU6;A4UCT3;A5GZ75;G8FSY7;P63261;B4E3A4;B4DVQ0;I3L4N8 PS1TP5BP1;ACTB;ACTG1;HEL-176;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 64.453 64.646 2;3 8.9403E-36 28281 20181213_JW_Orientia_Karp_1_2 216.77 173.74 661990000 215560000 135730000 152720000 5404700 70999000 50858000 4489700 26226000 5113 1717;1743 4440 31467;31468;31469;31470;31471;31472;31473;31474;31475;31476;31477;31478;31479 20248;20249;20250;20251;20252;20253;20254;20255;20256;20257;20258;20259 20251 1341 12 LCYVALDFEQEMATAASSSSLEK Unmodified 2549.1666 0.16655592 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q6S8J3;Q96FU6;A4UCT3;A5GZ75;G8FSY7;P63261;B4E3A4;B4DVQ0;I3L4N8 PS1TP5BP1;ACTB;ACTG1;HEL-176;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 72.762 72.826 2;3 1.0345E-20 33522 20181213_JW_Orientia_Karp_1_2 231.41 187.55 1516700000 549140000 259930000 284980000 12488000 74194000 58740000 205250000 71966000 5114 1717;1743 4440 31480;31481;31482;31483;31484;31485;31486;31487;31488;31489;31490;31491;31492;31493;31494 20260;20261;20262;20263;20264;20265;20266;20267;20268;20269 20261 9 LDADMPEVAVEGPNGK Deamidation (NQ) 1641.7556 0.75560214 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 55.913 56.225 2 0.01248 22931 20181213_JW_Orientia_Karp_1_3 100.22 51.242 63176000 22618000 16879000 17407000 1825200 3972300 0 0 473860 5115 1782 4441 31495;31496;31497;31498;31499;31500;31501;31502;31503;31504 20270;20271;20272 20271 1158 3 LDADMPEVAVEGPNGK Oxidation (M);Deamidation (NQ) 1657.7505 0.75051676 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 1 1 0 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 1 1 1 47.134 47.4 2 0.036767 16355 20181213_JW_Orientia_Karp_2_3 63.76 38.287 20288000 5988400 4816000 5682300 0 1157500 1824200 819620 0 5116 1782 4441 31505;31506;31507;31508;31509;31510;31511 20273;20274 20274 1158 1 LDAVVYR Unmodified 834.45995 0.45995289 1131 Karp_00376 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 39.565 39.815 2 0.030103 12673 20181213_JW_Orientia_Karp_1_3 89.369 44.288 50769000 23139000 10666000 8699000 1685100 6579500 0 0 0 5117 1131 4442 31512;31513;31514;31515;31516 20275 20275 1 LDEGDSLISVK Unmodified 1174.6081 0.60813326 1139 Karp_00451 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.242 50.543 2 3.7749E-09 17785 20181213_JW_Orientia_Karp_2_1 198.72 120.2 137610000 34179000 29047000 25317000 24091000 7850700 16271000 0 858400 5118 1139 4443 31517;31518;31519;31520;31521;31522;31523 20276;20277;20278;20279;20280;20281 20279 6 LDEIINNLISENEAK Unmodified 1713.8785 0.87849447 1437 Karp_02402 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 64.601 64.768 2 1.8626E-95 25640 20181213_JW_Orientia_Karp_2_1 316.05 237.53 143170000 28890000 48172000 32361000 3944600 19732000 10073000 0 0 5119 1437 4444 31524;31525;31526;31527;31528;31529;31530 20282;20283;20284;20285;20286;20287;20288;20289 20286 8 LDEIINNLISENEAK Deamidation (NQ) 1714.8625 0.86251005 1437 Karp_02402 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 63.481 63.745 2 1.1379E-05 25865 20181213_JW_Orientia_Karp_1_2 166.7 122.16 28284000 0 9379100 11680000 1588000 2212000 3424300 0 0 5120 1437 4444 31531;31532;31533;31534;31535;31536;31537 20290;20291;20292;20293 20291 953 4 LDEIYVAGLVAHSDLDER Unmodified 2014.0007 0.0007348666 475 Q05CK9;B2R8Z8;O60506-4;O60506-3;O60506-2;O60506;F6UXX1 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.083 63.341 3 0.00023632 27657 20181213_JW_Orientia_Karp_1_1 119.04 75.452 117770000 30976000 26702000 27959000 2107600 13739000 11915000 0 4366700 5121 475 4445 31538;31539;31540;31541;31542;31543;31544 20294;20295;20296;20297;20298;20299;20300 20294 7 LDELLAQK Unmodified 928.52295 0.52294707 1402 Karp_02202 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 41.977 42.307 2 2.5841E-05 14124 20181213_JW_Orientia_Karp_1_2 207.6 86.983 100010000 42307000 24204000 18066000 3337000 0 0 12099000 0 5122 1402 4446 31545;31546;31547;31548;31549 20301 20301 1 LDELYGTWR Unmodified 1151.5611 0.56112349 1660 Q59GY2;P36578;B4DMJ6;Q53G74;H3BM89;B4DMJ2 RPL4 60S ribosomal protein L4 yes no 0 0 0 0 By MS/MS 1 53.477 53.676 2 0.0062916 20997 20181213_JW_Orientia_Karp_1_3 122.28 71.476 0 0 0 0 0 0 0 0 0 5123 1660 4447 31550 20302 20302 1 LDEMEFNPVQQPQLNEK Unmodified 2057.9728 0.97280556 206 B4DMD3;B4DY34;A0A024RAW9;Q9Y2W2;F5H5G4 WBP11 WW domain-binding protein 11 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 59.04 59.223 2 0.0074335 25149 20181213_JW_Orientia_Karp_1_1 97.69 64.462 14225000 5263100 5155400 3806900 0 0 0 0 0 5124 206 4448 31551;31552;31553 20303 20303 1 LDEYLNSPLPDEIDENSMEDIK Unmodified 2578.1632 0.16324468 1863 Q6FIC5;Q9Y696;B4DWC4;Q9NVF8;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 70.048 70.173 3 7.9301E-06 31443 20181213_JW_Orientia_Karp_1_3 129.75 89.969 44388000 21247000 4371900 7790800 0 0 0 10979000 0 5125 1863 4449 31554;31555;31556;31557 20304;20305;20306 20305 3 LDEYLNSPLPDEIDENSMEDIK Oxidation (M) 2594.1582 0.1581593 1863 Q6FIC5;Q9Y696;B4DWC4;Q9NVF8;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 1 0 By MS/MS By MS/MS 1 1 65.312 65.486 2 0.00052463 28389 20181213_JW_Orientia_Karp_1_3 110.32 84.727 14589000 0 8964100 5625100 0 0 0 0 0 5126 1863 4449 31558;31559 20307;20308 20308 1476 2 LDEYNIIK Unmodified 1006.5335 0.53351176 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 1 1 47.334 47.685 2 0.00012759 17189 20181213_JW_Orientia_Karp_1_2 195.81 78.654 411990000 152970000 119620000 65949000 21706000 0 27206000 156390 24378000 5127 1318 4450 31560;31561;31562;31563;31564;31565;31566;31567 20309;20310;20311;20312;20313;20314 20310 6 LDFEEFMK Oxidation (M) 1073.4739 0.47394797 681 J3KN42;B7ZB41;B4E290;Q6NUK1-2;Q6NUK1 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 1 0 By MS/MS By matching 1 1 53.985 54.259 2 0.018211 21599 20181213_JW_Orientia_Karp_1_2 87.181 55.878 3159000 0 1834300 1324700 0 0 0 0 0 5128 681 4451 31568;31569 20315 20315 421 1 LDGETTDLQDQIAELQAQIDELK Unmodified 2585.2708 0.2708213 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 75.847 75.873 3 8.0271E-07 35277 20181213_JW_Orientia_Karp_1_3 133.65 100.28 22084000 0 5698000 14546000 985940 0 0 0 854340 5129 944 4452 31570;31571;31572;31573 20316;20317;20318 20318 3 LDHYAIIK Unmodified 971.54402 0.54401687 412 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;Q53RC5 RPL23A;DKFZp547I014 60S ribosomal protein L23a yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 35.805 36.105 2 0.0059101 10765 20181213_JW_Orientia_Karp_1_3 116.9 44.114 116950000 34168000 35512000 39195000 0 0 0 8077700 0 5130 412 4453 31574;31575;31576;31577 20319;20320;20321 20320 3 LDIDSPPITAR Unmodified 1196.6401 0.6401021 1597 V9HWB8;P14618;A0A024R5Z9;P14618-2;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 52.012 52.35 2 0.0033696 20775 20181213_JW_Orientia_Karp_1_1 112.13 63.335 376440000 171940000 0 0 127900000 75220000 0 1377200 0 5131 1597 4454 31578;31579;31580;31581 20322;20323;20324 20322 3 LDILTLFPIK Unmodified 1171.7216 0.72164688 1381 Karp_02118 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 75.786 75.785 2 0.00050529 35185 20181213_JW_Orientia_Karp_1_3 134.26 74.158 17584000 4267600 0 8479100 0 0 1337400 3499800 0 5132 1381 4455 31582;31583;31584;31585 20325;20326 20325 2 LDINITK Unmodified 815.47527 0.4752686 1453 Karp_02590 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 44.723 44.89 2 0.0067789 16063 20181213_JW_Orientia_Karp_1_1 157.33 4.6957 55926000 27298000 24604000 0 0 4023700 0 0 0 5133 1453 4456 31586;31587;31588;31589 20327;20328;20329;20330 20327 4 LDISTINIEQLTSDHAK Unmodified 1896.9793 0.97927114 1202 Karp_00823 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 61.667 61.867 3 0.0047243 26881 20181213_JW_Orientia_Karp_1_1 89.911 56.916 77627000 26484000 10331000 30933000 0 9878800 0 0 0 5134 1202 4457 31590;31591;31592;31593;31594 20331;20332;20333;20334;20335 20331 5 LDLCQQEIESSRVELR 2 Deamidation (NQ) 1975.9521 0.95207011 893 H0YCD6;Q5T9S2;Q7Z659;E9PFB9;J3KP97;Q5T9S5-2;Q5T9S5 CCDC18;DKFZp779H0156 Coiled-coil domain-containing protein 18 yes no 0 2 0 1 By MS/MS By MS/MS 1 1 66.033 66.134 3 0.0172 26235 20181213_JW_Orientia_Karp_2_3 73.834 28.627 7731300 0 0 0 0 4765600 2965600 0 0 5135 893 4458 31595;31596 20336;20337 20337 1705;1706 2 LDLDLTADSQPPVFK Unmodified 1657.8563 0.85630246 474 B2R8R5;Q13263;Q13263-2;M0R0K9 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS 1 67.981 67.981 2 0.0020205 30473 20181213_JW_Orientia_Karp_1_1 150.14 90.078 0 0 0 0 0 0 0 0 0 5136 474 4459 31597 20338 20338 1 LDLGESTSVSVANAQVQLSK Unmodified 2045.0641 0.064063405 1392 Karp_02141 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.221 59.508 2 3.2505E-48 25241 20181213_JW_Orientia_Karp_1_1 249.36 159.92 131800000 33118000 46418000 31493000 5784100 4348300 5500100 0 5143900 5137 1392 4460 31598;31599;31600;31601;31602;31603;31604 20339;20340;20341;20342;20343;20344;20345 20339 7 LDLIAQQMMPEVR Unmodified 1542.7898 0.78981957 1659 Q53Y06;P36543-2;P36543;P36543-3 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 0 0 0 0 By MS/MS 1 65.529 65.779 2 0.023017 28870 20181213_JW_Orientia_Karp_1_2 84.169 48.261 5935100 0 5935100 0 0 0 0 0 0 5138 1659 4461 31605 20346 20346 1 LDLIAQQMMPEVR 2 Oxidation (M) 1574.7796 0.77964882 1659 Q53Y06;P36543-2;P36543;P36543-3 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 0 0 2 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 50.514 50.883 2 0.003822 17306 20181213_JW_Orientia_Karp_3_2 107.85 58.381 33485000 15552000 0 0 4976900 2787200 4351700 4446600 1371100 5139 1659 4461 31606;31607;31608;31609;31610;31611 20347 20347 1280;1281 1 LDNLTSLYLAGER Unmodified 1463.762 0.76200815 1370 Karp_01999 yes yes 0 0 0 0 By MS/MS By matching 1 1 61.203 61.633 2 0.0063973 26410 20181213_JW_Orientia_Karp_1_2 105.95 60.29 7880700 0 7077700 0 0 0 0 0 803070 5140 1370 4462 31612;31613 20348 20348 1 LDNVPHTPSSYIETLPK Unmodified 1909.9785 0.97854286 239 E9PNW0;E9PJJ2;E9PS34;E9PNJ7;C9J6D1;A0A024RCC9;B7ZAK9;B7ZB83;B4DS05;Q99733;Q99733-2;E9PKI2;E9PP22;A8MXH2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.198 51.468 3 0.0032807 19698 20181213_JW_Orientia_Karp_1_2 108.71 73.769 98018000 29054000 13647000 30139000 10578000 0 14600000 0 0 5141 239 4463 31614;31615;31616;31617;31618 20349;20350;20351;20352;20353;20354 20351 6 LDPADAEGK Unmodified 914.43453 0.434526 1371 Karp_02001 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 28.817 29.139 2 0.02552 7401 20181213_JW_Orientia_Karp_1_3 80.755 33.761 825530000 184900000 161280000 160030000 63187000 43384000 42936000 169820000 0 5142 1371 4464 31619;31620;31621;31622;31623;31624;31625 20355;20356 20355 2 LDPHLVLDQLR Unmodified 1317.7405 0.74048484 47;944 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.844 58.121 3 0.0015763 22180 20181213_JW_Orientia_Karp_2_3 108.35 74.478 296370000 115890000 22443000 108650000 0 13810000 27383000 0 8199800 5143 47;944 4465 31626;31627;31628;31629;31630;31631 20357;20358;20359;20360;20361;20362 20361 6 LDQETAQWLR Unmodified 1258.6306 0.63060004 1938 Q96G03;Q4W5D6;E9PD70;E7ENQ8 PGM2;FLJ10983 Phosphoglucomutase-2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.249 50.44 2 0.00060187 19054 20181213_JW_Orientia_Karp_1_2 132.32 61.503 51255000 16244000 13336000 14986000 0 2358200 4331700 0 0 5144 1938 4466 31632;31633;31634;31635;31636 20363;20364 20363 2 LDQLEDSFK Unmodified 1093.5292 0.52915466 1426 Karp_02372 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 45.932 46.204 2 0.0014335 15449 20181213_JW_Orientia_Karp_2_1 125.57 35.817 81214000 20404000 21875000 14471000 7572000 5264600 7590000 0 4037400 5145 1426 4467 31637;31638;31639;31640;31641;31642;31643 20365;20366;20367 20366 3 LDQLIYIPLPDEK Unmodified 1555.8498 0.84976052 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 72.599 72.675 2 1.0606E-24 33098 20181213_JW_Orientia_Karp_1_3 228.61 132.99 286630000 104160000 41573000 59518000 0 18760000 0 47791000 14826000 5146 1708 4468 31644;31645;31646;31647;31648;31649 20368;20369;20370;20371;20372;20373 20370 6 LDQQTLPLGGR Unmodified 1196.6513 0.65133548 1756 Q7Z3D7;P98175-4;P98175-3;P98175-2;P98175;Q6PKH5 DKFZp686E2459;RBM10 RNA-binding protein 10 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 46.571 46.738 2 0.007889 16648 20181213_JW_Orientia_Karp_1_2 99.53 60.509 20496000 8050100 10739000 0 0 1706900 0 0 0 5147 1756 4469 31650;31651;31652 20374;20375 20375 2 LDQYNADSIK Unmodified 1165.5615 0.56151742 1262 Karp_01022 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 36.43 36.64 2 0.034149 11181 20181213_JW_Orientia_Karp_1_2 75.509 23.254 86693000 25388000 21067000 31981000 0 4804300 3452200 0 0 5148 1262 4470 31653;31654;31655;31656;31657 20376 20376 1 LDQYNSIFQTAIANK Unmodified 1724.8733 0.87334951 1261 Karp_01021 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 61.122 61.464 2 2.3314E-27 25919 20181213_JW_Orientia_Karp_1_3 229.56 154.05 54988000 0 11449000 27273000 2422800 6123500 5242700 2477700 0 5149 1261 4471 31658;31659;31660;31661;31662;31663 20377;20378;20379;20380;20381 20378 5 LDRRPHEVFVELNELMLDR Unmodified 2380.2321 0.23214856 629 H7C1Z2;E9PCP1;F8WD49;B4DR53;P48751-2;P48751;P48751-3 SLC4A3 Anion exchange protein;Anion exchange protein 3 yes no 0 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 76.959 76.953 3 0.01647 31647 20181213_JW_Orientia_Karp_2_1 99.392 49.855 275900000 84338000 39706000 53203000 19072000 21724000 13531000 40143000 4177500 5150 629 4472 31664;31665;31666;31667;31668;31669;31670;31671 20382;20383;20384;20385;20386 20384 5 LDRRPHEVFVELNELMLDR Oxidation (M) 2396.2271 0.22706318 629 H7C1Z2;E9PCP1;F8WD49;B4DR53;P48751-2;P48751;P48751-3 SLC4A3 Anion exchange protein;Anion exchange protein 3 yes no 0 0 1 2 By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 75.026 75.041 3 0.0091687 34633 20181213_JW_Orientia_Karp_1_3 113.14 75.568 339280000 133150000 38003000 64310000 0 32721000 28492000 41995000 602530 5151 629 4472 31672;31673;31674;31675;31676;31677;31678 20387;20388 20387 390 2 LDSANVYDWNR Unmodified 1351.6157 0.61567826 1204 Karp_00840 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.124 50.424 2 4.6946E-09 18848 20181213_JW_Orientia_Karp_1_3 195.83 142.07 30478000 0 7894500 6021600 8610000 3010100 4942000 0 0 5152 1204 4473 31679;31680;31681;31682;31683;31684 20389;20390;20391;20392 20392 4 LDSGLSLNSGVVALR Unmodified 1499.8308 0.83075641 1372 Karp_02002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 61.694 62.002 2 1.0949E-114 26900 20181213_JW_Orientia_Karp_1_1 331.92 197.92 883830000 201250000 244520000 181260000 38619000 99975000 69417000 22799000 25988000 5153 1372 4474 31685;31686;31687;31688;31689;31690;31691;31692;31693 20393;20394;20395;20396;20397;20398;20399;20400;20401 20393 9 LDSGLSLNSGVVALR Deamidation (NQ) 1500.8148 0.814772 1372 Karp_02002 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 64.691 64.923 2 1.139E-12 22691 20181213_JW_Orientia_Karp_3_1 195.72 121.88 93246000 10459000 18492000 18359000 862740 4678600 2245400 32222000 5927900 5154 1372 4474 31694;31695;31696;31697;31698;31699;31700;31701 20402;20403;20404;20405 20404 854 4 LDVEFKPLAPDGVLLFSGGK Unmodified 2101.1459 0.14594254 195 A0A024RAB6;P98160;Q59EG0;Q2VPA1 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By matching By MS/MS 1 1 72.515 72.589 3 0.0037832 26723 20181213_JW_Orientia_Karp_3_1 99.313 75.751 42045000 0 0 12525000 0 0 0 29520000 0 5155 195 4475 31702;31703 20406 20406 1 LDVENVSFSMPYLNPTTK Oxidation (M) 2069.998 0.99795767 1204 Karp_00840 yes yes 0 0 1 0 By MS/MS 1 64.353 64.451 2 0.012954 27799 20181213_JW_Orientia_Karp_1_3 85.287 32.594 10726000 0 0 10726000 0 0 0 0 0 5156 1204 4476 31704 20407 20407 769 1 LDVTILSPSR Unmodified 1099.6237 0.62372375 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 56.666 56.933 2 1.5069E-08 23307 20181213_JW_Orientia_Karp_1_2 200.56 91.084 206940000 51514000 47720000 67931000 5643400 20396000 13731000 0 0 5157 1520 4477 31705;31706;31707;31708;31709;31710 20408;20409;20410;20411;20412 20408 5 LDYILGLK Unmodified 933.55352 0.55351892 97 B5MCT8;C9JM19;B7Z732;A0A024R4M0;P46781;A5D904 RPS9 40S ribosomal protein S9 yes no 0 0 0 0 By MS/MS By matching 1 1 59.493 59.943 2 0.0097168 25335 20181213_JW_Orientia_Karp_1_2 104.75 38.943 4234600 0 2469100 0 0 0 0 1765500 0 5158 97 4478 31711;31712 20413 20413 1 LEAAEDIAYQLSR Unmodified 1477.7413 0.7412727 354 Q6PUJ7;Q6FHP5;Q53FV0;A8K401;P35232 HEL-S-54e;PHB Prohibitin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 57.334 57.641 2 5.9514E-08 23791 20181213_JW_Orientia_Karp_1_2 193.22 118.27 106100000 26457000 38226000 20758000 6769700 7169600 5434000 1288200 0 5159 354 4479 31713;31714;31715;31716;31717;31718;31719 20414;20415;20416;20417 20416 4 LEAAIAEAEER Unmodified 1200.5986 0.59863121 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q96GE1 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 40.201 40.502 2 0.00040296 12978 20181213_JW_Orientia_Karp_1_3 145.46 89.89 31895000 9523300 10102000 9872000 1800200 0 0 0 598190 + 5160 811 4480 31720;31721;31722;31723;31724 20418;20419;20420 20420 3 LEAALGEAK Unmodified 900.49165 0.49164694 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 33.914 34.276 2 0.036274 9977 20181213_JW_Orientia_Karp_1_2 74.165 24.038 76482000 38542000 23353000 7117400 0 0 0 4922100 2546400 5161 1543;1544;1851 4481 31725;31726;31727;31728;31729 20421 20421 1 LEAEIGANK Unmodified 943.49746 0.4974606 1300 Karp_01233 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 31.781 32.115 2 0.00079715 8579 20181213_JW_Orientia_Karp_3_1 141.52 32.042 92894000 18688000 35267000 23308000 6443800 0 3348300 5838400 0 5162 1300 4482 31730;31731;31732;31733;31734;31735;31736;31737 20422;20423;20424;20425;20426;20427;20428;20429 20428 6 LEAELLQIEER Unmodified 1341.714 0.71399532 51 K7EMQ8;J3QKS7;B4DGM3;A0A024R1S7;Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4;Q969G3;H7C048 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 57.535 57.785 2 0.0013625 23677 20181213_JW_Orientia_Karp_1_3 124.1 62.942 40983000 15373000 11898000 7135500 2174900 2519200 1881900 0 0 5163 51 4483 31738;31739;31740;31741;31742;31743 20430 20430 1 LEAIITPPPAK Unmodified 1148.6805 0.68051035 1518 O75367-2;O75367-3;O75367;D6RCF2 H2AFY Core histone macro-H2A.1;Histone H2A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 49.732 49.982 2 0.0032211 18656 20181213_JW_Orientia_Karp_1_2 112.75 71.322 115600000 33003000 34055000 38630000 5931500 1711900 2263200 0 0 5164 1518 4484 31744;31745;31746;31747;31748;31749 20431;20432;20433;20434 20432 4 LEALLAENSELK Unmodified 1328.7187 0.71874635 1859 Q6AZW6;Q99941-2;Q99941 ATF6B Cyclic AMP-dependent transcription factor ATF-6 beta;Processed cyclic AMP-dependent transcription factor ATF-6 beta yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 74.18 74.232 2 0.0047854 29912 20181213_JW_Orientia_Karp_2_2 109.44 43.973 11675000 0 0 7915300 0 3704200 0 0 55660 5165 1859 4485 31750;31751;31752;31753 20435;20436 20436 2 LEAPELPVK Unmodified 994.5699 0.56989727 970 H0YE28;Q8IZQ5 C11orf31;SELH Selenoprotein H yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 50.265 50.552 2 0.041937 19616 20181213_JW_Orientia_Karp_1_1 71.692 29.093 21907000 5199700 3849100 0 7861100 0 4996800 0 0 5166 970 4486 31754;31755;31756;31757 20437 20437 1 LEATINELV Unmodified 1000.5441 0.54407645 1012 H9ZYJ2;P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 67.534 67.634 2 0.00024211 30242 20181213_JW_Orientia_Karp_1_1 180.03 122.22 33937000 11056000 0 3935300 0 12079000 6867000 0 0 5167 1012 4487 31758;31759;31760;31761 20438;20439;20440;20441 20438 4 LEAVSHTSDMHR Oxidation (M) 1397.6358 0.63576177 498 D3DPU2;B2RDY9;Q01518;Q5T0R1;Q01518-2;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R9;B4DNA3;B4DUZ8;Q5T0S3;Q5T0R8 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 17.664 17.893 3 0.013325 3092 20181213_JW_Orientia_Karp_1_3 87.713 56.283 15534000 4286100 5455700 2907500 1886900 0 0 997620 0 5168 498 4488 31762;31763;31764;31765;31766 20442;20443 20443 322 2 LECGGGPWGNK Unmodified 1173.5237 0.52369213 1538 V9HW83;V9HVX6;P00352;B4DXX3;B4DDF8 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 36.079 36.479 2 0.022258 11562 20181213_JW_Orientia_Karp_1_1 83.998 38.663 17616000 12769000 0 0 1651500 0 0 3195300 0 5169 1538 4489 31767;31768;31769 20444 20444 1 LECSEELGDLVK Unmodified 1390.665 0.66499622 1757 Q00610-2;Q00610;P53675-2;P53675;A4FU99 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 52.355 52.728 2 0.008127 18355 20181213_JW_Orientia_Karp_3_1 100.82 61.515 60323000 25296000 12847000 16180000 1780600 0 2016700 1118200 1084400 5170 1757 4490 31770;31771;31772;31773;31774;31775;31776 20445;20446;20447 20446 3 LEDISFVER Unmodified 1106.5608 0.56078914 1436 Karp_02394 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 51.851 52.101 2 0.00013985 20159 20181213_JW_Orientia_Karp_1_2 186.76 106.54 242320000 51121000 66667000 45218000 36938000 17579000 24795000 0 0 5171 1436 4491 31777;31778;31779;31780;31781;31782 20448;20449 20449 2 LEDPHVDIIR Unmodified 1205.6404 0.64043645 69 Q8TEP9;A0A024R2F9;Q9BTV4 FLJ00144;TMEM43 Transmembrane protein 43 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 44.134 44.434 3 0.039972 15394 20181213_JW_Orientia_Karp_1_2 68.626 29.321 19147000 7825900 5668900 4326300 0 0 0 1326300 0 5172 69 4492 31783;31784;31785;31786 20450 20450 1 LEDSSNQVTQAVAK Unmodified 1488.742 0.74200098 1676 P46939;P46939-2;A8K8Z1 UTRN Utrophin yes no 0 0 0 0 By MS/MS 1 36.602 36.602 2 0.032358 11635 20181213_JW_Orientia_Karp_1_1 105.03 45.964 0 0 0 0 0 0 0 0 0 5173 1676 4493 31787 20451 20451 1 LEDVLPLAFTR Unmodified 1272.7078 0.70778773 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;B0QZK4;Q5SWC8;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.033 69.19 2 8.8697E-05 30809 20181213_JW_Orientia_Karp_1_3 161.51 77.299 158140000 47138000 19007000 28113000 2798000 8292100 4666000 37333000 10791000 5174 1846 4494 31788;31789;31790;31791;31792;31793;31794;31795 20452;20453;20454;20455;20456;20457;20458;20459;20460;20461;20462;20463 20458 12 LEEDINSSMTNSTAASRPPVTLR Oxidation (M) 2504.2177 0.21768029 1806 Q53SS8;Q15365 PCBP1 Poly(rC)-binding protein 1 yes no 0 0 1 1 By MS/MS By matching By matching By matching 1 1 1 1 43.692 44.119 3 0.042632 15237 20181213_JW_Orientia_Karp_1_2 62.002 20.489 23610000 0 13859000 7768500 0 0 0 1611900 370990 5175 1806 4495 31796;31797;31798;31799 20464 20464 1 LEELEQLK Unmodified 1000.5441 0.54407645 1069 Karp_00038 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 43.072 43.404 2 4.3289E-05 13672 20181213_JW_Orientia_Karp_2_2 205.58 11.604 1316000000 374060000 593510000 0 0 209650000 0 133510000 5302800 5176 1069 4496 31800;31801;31802;31803;31804 20465;20466;20467 20466 3 LEELEQLKR Unmodified 1156.6452 0.64518747 1069 Karp_00038 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 35.92 36.211 3 0.012185 10525 20181213_JW_Orientia_Karp_3_1 96.665 22.5 127560000 39729000 47903000 23701000 0 7607600 0 8621600 0 5177 1069 4497 31805;31806;31807;31808;31809 20468 20468 1 LEENLPILQQPTEK Unmodified 1650.8829 0.88285156 1515 O60664-4;O60664-3;O60664;K7ERZ3;K7EL96;K7ER39 PLIN3 Perilipin-3 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 57.069 57.358 2 0.012846 24004 20181213_JW_Orientia_Karp_1_1 125.82 77.847 50378000 13494000 18918000 14337000 0 0 0 0 3629300 5178 1515 4498 31810;31811;31812;31813;31814 20469;20470 20469 1 LEEQPGDLIPTPFSEITK Unmodified 2013.0306 0.030638012 1331 Karp_01369 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 72.469 72.541 2 0.001327 32997 20181213_JW_Orientia_Karp_1_3 113.43 67.542 274560000 75681000 57221000 60898000 13664000 0 17249000 31985000 17864000 5179 1331 4499 31815;31816;31817;31818;31819;31820;31821 20471;20472;20473;20474 20473 4 LEEVMQELR Unmodified 1145.5751 0.575059 113 Q9NSK3;A0A024R5K1;Q9BR76 DKFZp762I166;CORO1B Coronin;Coronin-1B yes no 0 0 0 0 By MS/MS 1 47.821 48.019 2 0.033489 17233 20181213_JW_Orientia_Karp_1_3 89.047 24.336 0 0 0 0 0 0 0 0 0 5180 113 4500 31822 20475 20475 1 LEFILTDAIGR Unmodified 1246.6921 0.69213767 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 69.06 69.232 2 0.00010258 27310 20181213_JW_Orientia_Karp_3_2 160.75 86.769 60030000 0 0 7456500 0 15780000 8262700 20770000 7760400 5181 1376 4501 31823;31824;31825;31826;31827;31828 20476;20477 20477 2 LEFMADLVQSMQEPDLK Oxidation (M) 2008.9486 0.94856464 2027 yes no 0 0 1 0 By MS/MS 1 57.459 57.658 2 0.0084013 23561 20181213_JW_Orientia_Karp_1_3 93.839 30.748 8134300 0 0 8134300 0 0 0 0 0 + 5182 2027 4502 31829 20478 20478 1552 1 LEGDLTGPSVDVEVPDVELECPDAK Unmodified 2682.2582 0.2582077 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 2 71.147 71.257 2;3 0.0008057 25951 20181213_JW_Orientia_Karp_3_1 134.76 110.2 26703000 6284000 5090800 4024200 0 0 0 11304000 0 5183 1782 4503 31830;31831;31832;31833;31834 20479;20480 20479 2 LEGDLTGPSVGVEVPDVELECPDAK Unmodified 2624.2527 0.25272839 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 2 1 70.07 70.221 2;3 2.2066E-10 25337 20181213_JW_Orientia_Karp_3_1 153.72 107.66 79244000 18907000 0 4297300 2659700 8462600 0 34018000 10899000 5184 1782 4504 31835;31836;31837;31838;31839;31840;31841;31842 20481;20482;20483;20484;20485;20486 20484 6 LEGDSTDLSDQIAELQAQIAELK Unmodified 2486.2388 0.23879289 47 A0A024R1N1;P35579;Q86XU5;Q99529 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.02 76.015 3 1.8858E-36 30798 20181213_JW_Orientia_Karp_2_2 221.51 134.16 646360000 170610000 107440000 135870000 25154000 31857000 25180000 140580000 9674600 5185 47 4505 31843;31844;31845;31846;31847;31848;31849;31850 20487;20488;20489;20490;20491;20492;20493;20494;20495 20492 9 LEGDTLIIPR Unmodified 1125.6394 0.63937381 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.849 55.17 2 8.067E-07 22178 20181213_JW_Orientia_Karp_1_2 188.66 120.44 320800000 86918000 77909000 107400000 21588000 13397000 13507000 76281 0 5186 195 4506 31851;31852;31853;31854;31855;31856;31857 20496;20497;20498;20499;20500;20501 20497 6 LEGEDQFLEVAEAPEATQATFPVHR Unmodified 2783.3402 0.34023827 810 CON__Q2KJF1 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 65.258 65.448 3 0.001566 22781 20181213_JW_Orientia_Karp_3_1 72.805 44.04 28108000 8749200 5401100 4820400 0 0 5052800 4084100 0 + 5187 810 4507 31858;31859;31860;31861;31862 20502;20503;20504 20504 3 LEGELQAPDLELSLPAIHVEGLDIK Unmodified 2698.4429 0.44291242 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 73.646 73.688 3 3.1739E-08 34094 20181213_JW_Orientia_Karp_1_2 139.04 107.76 136540000 39217000 38532000 19164000 4890900 0 0 28603000 6132800 5188 1782 4508 31863;31864;31865;31866;31867;31868 20505;20506;20507;20508;20509 20507 5 LEGHGLPANLPR Unmodified 1272.6939 0.693869 36 A0A024R0S6;Q9NZN4;B4DLA1;B3KUH4;Q9NZN4-2;B4DU62;B7ZAY3 EHD2 EH domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.178 39.412 3 0.0097266 11926 20181213_JW_Orientia_Karp_2_1 88.155 24.835 144250000 129790000 0 0 9195200 5267100 0 0 0 5189 36 4509 31869;31870;31871 20510;20511;20512;20513 20512 4 LEGIASSLSK Unmodified 1003.555 0.55497548 1268 Karp_01076 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 41.948 42.22 2 0.00019216 13285 20181213_JW_Orientia_Karp_2_1 145.46 83.353 1251900000 494000000 264560000 219200000 153600000 86110000 22737000 0 11672000 5190 1268 4510 31872;31873;31874;31875;31876;31877;31878 20514;20515;20516;20517;20518 20517 4 LEGLGSSEADQDGLASTVR Unmodified 1903.9123 0.91231379 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.225 51.591 2 3.8083E-55 19760 20181213_JW_Orientia_Karp_1_2 268.5 210.36 196230000 68736000 83504000 0 9465400 9796700 5416500 18121000 1193800 5191 224 4511 31879;31880;31881;31882;31883;31884;31885;31886 20519;20520;20521;20522;20523;20524;20525;20526;20527 20520 9 LEGNMNEALEYYER Oxidation (M) 1745.7567 0.75666477 1578 P09914-2;P09914 IFIT1 Interferon-induced protein with tetratricopeptide repeats 1 yes no 0 0 1 0 By MS/MS 1 46.092 46.442 2 0.028943 16508 20181213_JW_Orientia_Karp_1_2 95.273 55.119 0 0 0 0 0 0 0 0 0 5192 1578 4512 31887 20528 20528 1 LEGPDVSLK Unmodified 956.51786 0.51786169 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 43.716 43.956 2 0.007444 14074 20181213_JW_Orientia_Karp_2_2 99.139 54.744 77391000 31560000 35622000 0 4776300 2733300 2698700 0 0 5193 1782 4513 31888;31889;31890;31891;31892;31893 20529;20530;20531;20532 20532 4 LEGVLAEVAQHYQDTLIR Unmodified 2054.0797 0.07965389 235 A4QPB0;A0A024RC65;P46940;Q6P1N4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 65.931 66.098 3 0.013667 29092 20181213_JW_Orientia_Karp_1_2 101.04 69.029 113030000 26343000 24826000 29914000 0 8333600 3818100 19793000 0 5194 235 4514 31894;31895;31896;31897;31898;31899 20533 20533 1 LEHGLYYNPYFSIQK Unmodified 1870.9254 0.92538508 1142 Karp_00456 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 54.474 54.741 3 0.0076028 21930 20181213_JW_Orientia_Karp_1_2 84.508 44.23 97053000 33051000 15007000 23074000 7211900 9597000 9112800 0 0 5195 1142 4515 31900;31901;31902;31903;31904;31905 20534;20535;20536;20537;20538 20535 5 LEIEPEWAYGK Unmodified 1333.6554 0.65541781 1758 Q53GD8;Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.103 58.396 2 0.0017909 22363 20181213_JW_Orientia_Karp_2_3 118.71 53.365 74347000 20634000 28251000 0 0 8818000 11401000 0 5243200 5196 1758 4516 31906;31907;31908;31909;31910;31911 20539;20540;20541;20542;20543 20542 5 LEIGTEIFLK Unmodified 1161.6645 0.66452593 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 65.154 65.384 2 6.9654E-13 25476 20181213_JW_Orientia_Karp_2_2 204.42 114.05 80437000 35802000 0 9961900 912290 20317000 6966800 1691900 4784800 5197 1396 4517 31912;31913;31914;31915;31916;31917;31918;31919 20544;20545;20546;20547;20548;20549;20550;20551 20548 8 LEILQIHTK Unmodified 1093.6495 0.64954457 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 1 1 1 44.318 44.619 2;3 0.0029627 15508 20181213_JW_Orientia_Karp_1_2 97.965 33.312 209710000 154200000 36093000 9301600 3942600 775960 0 4724700 671960 5198 1708 4518 31920;31921;31922;31923;31924;31925;31926;31927;31928;31929;31930 20552;20553;20554;20555;20556 20553 5 LEILQLLK Unmodified 968.62702 0.62701821 236 A0A024RC76;Q96AZ6 ISG20 Interferon-stimulated gene 20 kDa protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 68.402 68.502 2 0.0041949 30924 20181213_JW_Orientia_Karp_1_1 140.09 5.4261 6260800 2535600 3026400 0 0 0 698720 0 0 5199 236 4519 31931;31932;31933;31934 20557;20558 20557 2 LEISNFTESGNER Deamidation (NQ) 1495.6791 0.67906638 1173 Karp_00627 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 3 3 3 2 3 2 3 1 51.511 51.824 2 6.3522E-07 20404 20181213_JW_Orientia_Karp_1_2 183.06 116.14 128990000 30822000 29698000 28992000 12605000 11830000 7578200 6045500 1419700 5200 1173 4520 31935;31936;31937;31938;31939;31940;31941;31942;31943;31944;31945;31946;31947;31948;31949;31950;31951;31952;31953;31954 20559;20560;20561;20562;20563;20564;20565;20566 20561 576;577 6 LEISNFTESGNER Unmodified 1494.6951 0.69505079 1173 Karp_00627 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.333 48.678 2 4.5603E-17 17866 20181213_JW_Orientia_Karp_1_2 238.2 158.71 703100000 160930000 179680000 157070000 66499000 29433000 39815000 2018800 67654000 5201 1173 4520 31955;31956;31957;31958;31959;31960;31961;31962 20567;20568;20569;20570;20571;20572;20573;20574 20567 8 LELEQTYQAK Unmodified 1221.6241 0.62411768 1044 J9JID7;Q03252 LMNB2 Lamin-B2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 40.543 40.864 2 0.00039321 13193 20181213_JW_Orientia_Karp_1_3 148.94 96.007 83179000 24081000 20281000 19732000 7124000 1685700 1800000 6511500 1963800 5202 1044 4521 31963;31964;31965;31966;31967;31968;31969;31970 20575;20576;20577;20578 20578 4 LELIANSLLDK Unmodified 1227.7075 0.70745338 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 62.866 63.186 2 0.0024937 26942 20181213_JW_Orientia_Karp_1_3 115.78 45.681 9426700 0 0 4708800 0 4260300 0 0 457610 5203 1458 4522 31971;31972;31973;31974 20579;20580;20581 20579 3 LELLAAYEEVIR Unmodified 1417.7817 0.78168095 1815 Q16643;Q16643-3;D6R9W4;D6RFI1 DBN1 Drebrin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.954 71.061 2 0.0013394 28470 20181213_JW_Orientia_Karp_2_2 129.82 85.442 43443000 10838000 3712800 4373100 3313400 6207600 4221300 10777000 0 5204 1815 4523 31975;31976;31977;31978;31979;31980;31981 20582;20583;20584;20585;20586;20587 20585 5 LELLISGYR Unmodified 1062.6073 0.6073454 1150 Karp_00511 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 58.65 58.937 2 0.00074282 24690 20181213_JW_Orientia_Karp_1_2 150.36 45.615 102250000 25547000 38293000 13241000 3564900 5790800 14027000 0 1785800 5205 1150 4524 31982;31983;31984;31985;31986;31987;31988 20588;20589;20590;20591;20592 20589 5 LELLISGYRNNIK Deamidation (NQ) 1532.8562 0.85624288 1150 Karp_00511 yes yes 0 1 0 1 By MS/MS 1 54.384 54.384 3 0.014025 22121 20181213_JW_Orientia_Karp_1_1 80.979 37.597 0 0 0 0 0 0 0 0 0 5206 1150 4525 31989 20593 20593 543;544 1 LELPEGCNLVK Unmodified 1270.6591 0.65912298 1100 Karp_00268 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 52.285 52.63 2 0.00066192 18891 20181213_JW_Orientia_Karp_2_1 123.86 61.664 521930000 176040000 83386000 100520000 54505000 57944000 42356000 1536200 5640200 5207 1100 4526 31990;31991;31992;31993;31994;31995;31996;31997 20594;20595;20596;20597;20598;20599 20597 6 LELQFPR Unmodified 901.50215 0.50215205 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 53.637 53.904 2 0.012054 21381 20181213_JW_Orientia_Karp_1_2 125.25 32.56 56419000 16219000 13755000 8265300 3587700 3357900 11234000 0 0 5208 839 4527 31998;31999;32000;32001;32002;32003 20600;20601;20602;20603 20601 4 LELQGPR Unmodified 811.4552 0.45520186 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338;H7BY16;Q9BQ02 NCL Nucleolin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 35.454 35.72 2 0.027706 9928 20181213_JW_Orientia_Karp_2_1 92.47 31.465 32038000 18458000 0 0 4877000 8702500 0 0 0 5209 88 4528 32004;32005;32006;32007;32008 20604;20605;20606;20607;20608;20609 20606 6 LELQLLEHSLSTNK Unmodified 1623.8832 0.88318591 455 E7EVQ3;B2R6E3;O15123-3;O15123;O15123-2 ANGPT2 Angiopoietin-2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 55.537 55.857 3 0.020097 20617 20181213_JW_Orientia_Karp_2_2 106.54 70.126 70129000 0 25636000 7348100 6587900 17954000 12603000 0 0 5210 455 4529 32009;32010;32011;32012;32013 20610;20611;20612;20613 20612 4 LELQQLQAER Unmodified 1226.6619 0.66190017 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.053 46.296 2 4.0307E-05 16396 20181213_JW_Orientia_Karp_1_2 157.75 98.396 76123000 19359000 23927000 21096000 0 2064100 2522800 0 7154300 5211 839 4530 32014;32015;32016;32017;32018;32019 20614;20615;20616;20617;20618 20615 5 LELQQVIDK Unmodified 1084.6128 0.61282471 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.186 50.493 2 6.8407E-05 17686 20181213_JW_Orientia_Karp_2_1 191.45 68.707 600260000 111600000 144920000 150100000 99287000 32738000 54671000 6943800 0 5212 1273 4531 32020;32021;32022;32023;32024;32025;32026 20619;20620;20621;20622;20623;20624;20625 20623 7 LELQQVIDKFPK Unmodified 1456.829 0.8289655 1273 Karp_01100 yes yes 0 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 1 57.803 58.08 3 0.011883 21870 20181213_JW_Orientia_Karp_2_2 95.651 46.15 102570000 13953000 7071500 14061000 0 50984000 14110000 0 2388500 5213 1273 4532 32027;32028;32029;32030;32031;32032;32033;32034 20626;20627;20628 20628 3 LELQTINPVLLK Unmodified 1379.8388 0.8388019 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.335 65.542 2 2.4148E-51 29109 20181213_JW_Orientia_Karp_1_1 276 166.56 462400000 114120000 98111000 117650000 10595000 63180000 28804000 29945000 0 5214 1219 4533 32035;32036;32037;32038;32039;32040;32041 20629;20630;20631;20632;20633;20634;20635 20629 7 LELTEIEQHAFTQSVNAVR Unmodified 2184.1175 0.11749596 1110 Karp_00292 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.755 60.005 3 4.1727E-15 25301 20181213_JW_Orientia_Karp_1_2 195.25 149.9 314660000 96609000 94262000 46035000 26242000 30235000 21273000 0 0 5215 1110 4534 32042;32043;32044;32045;32046;32047 20636;20637;20638;20639;20640;20641;20642 20638 7 LEMEMEAAR 2 Oxidation (M) 1110.4685 0.46854502 367 A8K525;Q15233-2;Q15233;H7C367;C9JYS8 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.867 22.212 2 0.0029224 4845 20181213_JW_Orientia_Karp_1_1 106.68 70.803 13428000 1834300 8049800 715560 693320 365970 448060 914260 406900 5216 367 4535 32048;32049;32050;32051;32052;32053;32054;32055 20643;20644;20645;20646;20647;20648;20649 20643 255;256 7 LEMEMEAAR Unmodified 1078.4787 0.47871577 367 A8K525;Q15233-2;Q15233;H7C367;C9JYS8 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS 1 41.783 41.783 2 0.0025189 14338 20181213_JW_Orientia_Karp_1_1 116.05 63.648 4799800 4799800 0 0 0 0 0 0 0 5217 367 4535 32056 20650 20650 1 LEMQMLMPVSWSR Unmodified 1606.767 0.76697564 1617 P21817-3;P21817-2;P21817 RYR1 Ryanodine receptor 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 62.55 62.783 2 0.038045 26537 20181213_JW_Orientia_Karp_1_3 73.841 37.933 36027000 0 5578600 25551000 0 0 4897200 0 0 5218 1617 4536 32057;32058;32059 20651 20651 1 LENEIQTYR Unmodified 1164.5775 0.57750184 798;791 CON__P02535-1;CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 36.546 36.892 2 5.2776E-21 11762 20181213_JW_Orientia_Karp_1_1 249.03 113.26 941060000 298510000 247310000 168630000 33616000 53328000 34776000 73031000 31857000 + 5219 791;798 4537 32060;32061;32062;32063;32064;32065;32066;32067;32068 20652;20653;20654;20655;20656;20657;20658;20659 20652 8 LENLGIPEEELLR Unmodified 1523.8195 0.81952302 1759 Q658N3;Q53F47;Q01658 DKFZp666G145;DR1 Protein Dr1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 64.645 64.812 2 0.0033992 25568 20181213_JW_Orientia_Karp_2_3 116.54 66.246 71795000 19409000 11744000 12668000 3666100 17221000 7087600 0 0 5220 1759 4538 32069;32070;32071;32072;32073;32074 20660;20661;20662;20663;20664 20664 5 LENYIQDNMK Oxidation (M) 1282.5864 0.58635197 455 E7EVQ3;B2R6E3;O15123-3;O15123 ANGPT2 Angiopoietin-2 yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 36.158 36.609 2 0.011842 10772 20181213_JW_Orientia_Karp_2_3 87.568 53.181 8122400 0 4064600 0 1293400 0 853160 1911300 0 5221 455 4539 32075;32076;32077;32078 20665;20666 20665 301 2 LEPHEGLLLR Unmodified 1175.6663 0.66625727 687 B4E2Z3;F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 42.341 42.566 3 0.016994 14115 20181213_JW_Orientia_Karp_1_3 70.1 34.589 31736000 17936000 0 12636000 691000 0 472600 0 0 5222 687 4540 32079;32080;32081;32082 20667 20667 1 LEQDEYALR Unmodified 1135.551 0.55095274 1710 P55084-2;P55084;F5GZQ3;B4DDC9;B4DY96;D6W539 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 39.565 39.74 2 0.0079959 13292 20181213_JW_Orientia_Karp_1_1 98.048 37.93 52861000 16988000 20097000 14090000 0 1687300 0 0 0 5223 1710 4541 32083;32084;32085;32086 20668 20668 1 LEQEIATYR Unmodified 1121.5717 0.57168818 790;795;924;807;555;277 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;CON__P19012;CON__A2A4G1;P19012;Q13092;B3KVF5;CON__Q61782;A8MT21;P19012-2;CON__P35900;CON__Q9D312;P35900;CON__Q8N1A0;Q8N1A0-2;Q8N1A0;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;B4DE59;CON__P13646-1;A8K2H9;A1A4E9;B4DL17;CON__Q04695;CON__Q9QWL7;Q04695;Q14666;F5GWP8 KRT14;KRT15;K14;KRT20;KRT222;KRT16;KRT13;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 20;Keratin-like protein KRT222;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 17 no no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 37.858 38.208 2 0.00080896 12046 20181213_JW_Orientia_Karp_1_2 137.98 62.933 58658000 21543000 16790000 12505000 1800100 0 0 6020600 0 + 5224 790;795;555;277;807;924 4542 32087;32088;32089;32090;32091 20669;20670 20669 2 LEQLYIVTEDK Unmodified 1349.7078 0.70784731 1434 Karp_02392 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 53.546 53.868 2 2.1115E-05 19583 20181213_JW_Orientia_Karp_2_1 181.31 98.668 69312000 16623000 17794000 17028000 5519800 6498000 5391300 458280 0 5225 1434 4543 32092;32093;32094;32095;32096;32097;32098 20671;20672;20673;20674 20673 4 LEQTSEDSSK Unmodified 1122.5041 0.50406212 487 Q6NZX3;Q53Z63;B2RBH2;P21589-2;P21589;Q96B60 NT5E 5'-nucleotidase yes no 0 0 0 0 By MS/MS 1 16.168 16.367 2 0.010607 2571 20181213_JW_Orientia_Karp_1_3 92.239 5.2855 206180 0 0 206180 0 0 0 0 0 5226 487 4544 32099 20675 20675 1 LEQYTSAIEGTK Unmodified 1338.6667 0.66671078 622 B4DPW5;B7Z6G4;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682;E9PGZ1;Q9NYG1;B4E3I0;C9J813 CALD1 Caldesmon yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 40.388 40.709 2 4.0063E-11 12551 20181213_JW_Orientia_Karp_2_1 198.97 94.548 240200000 34295000 20777000 27581000 43599000 25186000 17232000 44906000 26626000 5227 622 4545 32100;32101;32102;32103;32104;32105;32106;32107 20676;20677;20678;20679;20680;20681 20679 6 LESALTELEQLR Unmodified 1400.7511 0.75110911 1589 P12270;Q58F23;Q504U6;Q15624;A0PJC9 TPR Nucleoprotein TPR yes no 0 0 0 0 By MS/MS 1 62.498 62.697 2 0.032776 26621 20181213_JW_Orientia_Karp_1_3 89.805 43.896 0 0 0 0 0 0 0 0 0 5228 1589 4546 32108 20682 20682 1 LESEHPDQAQAILSR Unmodified 1692.8431 0.84311201 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching 1 1 38.949 39.124 3 0.0094828 12983 20181213_JW_Orientia_Karp_1_1 122.63 81.749 78199000 35878000 42321000 0 0 0 0 0 0 5229 506 4547 32109;32110 20683 20683 1 LESKDYVVIK Unmodified 1192.6703 0.67033959 1297 Karp_01188 yes yes 0 0 0 1 By MS/MS By matching By matching 1 1 1 37.289 37.572 3 0.008608 12093 20181213_JW_Orientia_Karp_1_1 99.973 21.034 72137000 59270000 0 11656000 0 0 0 1210100 0 5230 1297 4548 32111;32112;32113 20684 20684 1 LESLSYQLSGLQK Unmodified 1464.7824 0.78240924 1044 J9JID7;Q03252 LMNB2 Lamin-B2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 54.624 54.894 2 1.7855E-11 22393 20181213_JW_Orientia_Karp_1_1 236.22 172.69 80190000 16485000 21575000 23640000 8875900 9613900 0 0 0 5231 1044 4549 32114;32115;32116;32117;32118 20685;20686;20687;20688 20685 4 LESLVGDLITK Unmodified 1186.6809 0.68090428 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 3 3 2 4 61.506 61.803 1;2 3.1005E-07 24237 20181213_JW_Orientia_Karp_2_1 187.5 118.23 2640700000 291040000 737890000 892350000 89572000 20596000 490310000 34535 118930000 5232 1074 4550 32119;32120;32121;32122;32123;32124;32125;32126;32127;32128;32129;32130;32131;32132;32133;32134;32135;32136;32137;32138;32139;32140 20689;20690;20691;20692;20693;20694;20695;20696;20697;20698;20699;20700;20701;20702;20703 20693 13 LESNQLNTK Unmodified 1045.5404 0.54038805 1390 Karp_02139 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 24.724 24.999 2 0.00081206 4827 20181213_JW_Orientia_Karp_2_2 137.05 38.416 11362000 0 0 7087400 0 4275100 0 0 0 5233 1390 4551 32141;32142 20704;20705 20705 2 LETEMHELTLK Oxidation (M) 1358.6752 0.67516697 2051 yes no 0 0 1 0 By MS/MS 2 56.792 57.043 2 0.013268 21574 20181213_JW_Orientia_Karp_2_3 87.639 18.793 19930000 0 0 0 0 0 19930000 0 0 + 5234 2051 4552 32143;32144 20706 20706 1562 1 LEVEANNAFDQYR Unmodified 1567.7267 0.72668527 467 B2R7T8;P47756-2;B1AK87;B1AK88;B4DWA6;P47756;B1AK85 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By MS/MS 1 50.056 50.406 2 0.01112 19040 20181213_JW_Orientia_Karp_1_2 127.52 92.296 0 0 0 0 0 0 0 0 0 5235 467 4553 32145 20707 20707 1 LEVGGDIQLTHVQT Unmodified 1508.7835 0.78347187 9 Q8WYQ7;B3KWW5;A0A024QZ02;A0A024QZ55;O00182-2;O00182;B4DJD7;J3KSY2;Q3B8N2-2;Q6DKI2;Q3B8N2;B4DKP4 LGALS9;LGALS9C;LGALS9B Galectin;Galectin-9;Galectin-9B;Galectin-9C yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 55.278 55.594 2 0.011104 19434 20181213_JW_Orientia_Karp_3_2 96.464 60.146 51791000 19824000 10459000 10911000 1886900 5466700 2664600 0 578020 5236 9 4554 32146;32147;32148;32149;32150;32151;32152 20708 20708 1 LEVGGQYIK Unmodified 1005.5495 0.54949617 1410 Karp_02227 yes yes 0 0 0 0 By MS/MS By matching 1 1 42.565 42.99 2 0.026905 14396 20181213_JW_Orientia_Karp_1_3 79.906 21.31 13578000 0 0 13301000 0 0 0 276380 0 5237 1410 4555 32153;32154 20709 20709 1 LEVNEAELLR Unmodified 1184.6401 0.6401021 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5 PTRF Polymerase I and transcript release factor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.676 52.97 2 5.9962E-09 20830 20181213_JW_Orientia_Karp_1_2 210.64 101.2 136170000 36643000 0 40617000 21604000 18822000 17818000 0 665620 5238 1868 4556 32155;32156;32157;32158;32159;32160;32161;32162 20710;20711;20712;20713;20714;20715;20716;20717 20711 8 LEVNLQAMK Oxidation (M) 1060.5587 0.55868065 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.239 40.559 2 0.00061798 13152 20181213_JW_Orientia_Karp_1_2 150.36 78.67 322450000 89365000 98688000 61065000 13742000 9226600 2460200 41803000 6094800 5239 47 4557 32163;32164;32165;32166;32167;32168;32169;32170 20718;20719;20720;20721;20722;20723;20724;20725 20719 42 8 LEVNLQAMK Unmodified 1044.5638 0.56376603 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 48.637 48.938 2 0.026905 17957 20181213_JW_Orientia_Karp_1_3 79.906 19.317 196450000 46429000 68660000 45098000 10715000 5162500 7308800 0 13074000 5240 47 4557 32171;32172;32173;32174;32175;32176;32177 20726;20727 20726 2 LEVPDMNIR Oxidation (M) 1101.5488 0.54884425 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 42.785 43.147 2 0.028985 14422 20181213_JW_Orientia_Karp_1_3 75.043 25.602 85190000 31120000 0 15051000 8702800 0 0 28621000 1694000 5241 1782 4558 32178;32179;32180;32181;32182 20728 20728 1 LEVPDMNIR Unmodified 1085.5539 0.55392962 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.808 54.075 2 0.020227 19726 20181213_JW_Orientia_Karp_2_1 83.998 21.999 122320000 46342000 24234000 23970000 10611000 6741200 10417000 0 0 5242 1782 4558 32183;32184;32185;32186;32187;32188 20729;20730;20731;20732 20730 4 LEVTGPAVVTAGMITVADK Oxidation (M) 1887.0023 0.002314771 1219 Karp_00886 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 60.578 60.761 2 1.0808E-09 25517 20181213_JW_Orientia_Karp_1_3 172.85 137.96 48526000 18950000 15222000 14354000 0 0 0 0 0 5243 1219 4559 32189;32190;32191 20733;20734;20735 20735 780 3 LEVTGPAVVTAGMITVADK Unmodified 1871.0074 0.0074001489 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 1 1 67.987 68.188 2;3 0.00029708 30655 20181213_JW_Orientia_Karp_1_1 124.09 93.267 78790000 23217000 22893000 25296000 1084500 1325600 0 2602100 2371100 5244 1219 4559 32192;32193;32194;32195;32196;32197;32198;32199;32200 20736;20737;20738;20739 20736 4 LEWPLTEVAEGVFETEAPGGYK Unmodified 2421.174 0.17400778 392 B3KV49;B4DX01;B7Z403;A8K8F0;Q9Y3E8;Q9HC38-2;Q9HC38;I3L3Q4;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 By MS/MS 1 75.332 75.381 3 0.026565 35247 20181213_JW_Orientia_Karp_1_2 79.461 50.039 0 0 0 0 0 0 0 0 0 5245 392 4560 32201 20740 20740 1 LFAAIAEDAK Unmodified 1047.5601 0.56006086 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.251 48.596 2 9.5899E-05 16699 20181213_JW_Orientia_Karp_2_1 149.57 83.222 639860000 167380000 193560000 115190000 64444000 18672000 45077000 59561 35482000 5246 1396 4561 32202;32203;32204;32205;32206;32207;32208;32209 20741;20742;20743;20744;20745;20746;20747 20744 7 LFAQLAGDDMEVSATELMNILNK Oxidation (M) 2538.2346 0.23457591 1552 P04632;K7ELJ7;K7EM73;K7EIV0;A0A075B7C0;U3KQE2 CAPNS1 Calpain small subunit 1 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 74.85 74.871 3 0.00029155 34789 20181213_JW_Orientia_Karp_1_2 112.14 79.988 70541000 22286000 7086600 19016000 1065500 4382600 6814800 9890100 0 5247 1552 4562 32210;32211;32212;32213;32214;32215;32216 20748;20749;20750;20751 20749 1163;1164 4 LFASLVR Unmodified 804.48577 0.48577371 1138 Karp_00450 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.398 49.668 2 0.012212 17249 20181213_JW_Orientia_Karp_2_2 128.48 44.87 69365000 13084000 12805000 3606500 31136000 0 8733400 0 0 5248 1138 4563 32217;32218;32219;32220;32221;32222 20752;20753;20754;20755;20756;20757 20756 6 LFDDNEIK Unmodified 992.48148 0.48147619 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 44.628 44.895 2 0.0043285 15158 20181213_JW_Orientia_Karp_2_3 132.76 55.475 138500000 31236000 42943000 45776000 0 5404600 8435800 4707400 0 5249 1428 4564 32223;32224;32225;32226;32227;32228 20758;20759;20760;20761;20762;20763 20763 6 LFDMDGLGK Oxidation (M) 1010.4743 0.47428232 1383 Karp_02122 yes yes 0 0 1 0 By MS/MS 1 46.899 47.448 2 0.028042 16111 20181213_JW_Orientia_Karp_2_1 75.738 26.148 1037400 0 0 0 1037400 0 0 0 0 5250 1383 4565 32229 20764 20764 983 1 LFDQAFGLPR Unmodified 1162.6135 0.61349341 1553 V9HW43;P04792;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 6 3 3 5 2 2 67.231 67.409 2 1.2317E-17 25125 20181213_JW_Orientia_Karp_2_1 232.83 117.94 2734000000 81968000 582960000 526880000 40452000 632980000 841680000 26080000 1028600 5251 1553 4566 32230;32231;32232;32233;32234;32235;32236;32237;32238;32239;32240;32241;32242;32243;32244;32245;32246;32247;32248;32249;32250;32251;32252;32253;32254;32255 20765;20766;20767;20768;20769;20770;20771;20772;20773;20774;20775;20776;20777;20778;20779 20772 15 LFEAEAQDLFR Unmodified 1337.6616 0.66156582 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 63.637 63.851 2 0.00026173 27429 20181213_JW_Orientia_Karp_1_3 152.07 87.648 56680000 24285000 0 29424000 509100 0 0 0 2462400 5252 185 4567 32256;32257;32258;32259 20780;20781 20780 2 LFEGNALLR Unmodified 1031.5764 0.57637963 97 B5MCT8;C9JM19;B7Z732;A0A024R4M0;P46781;A5D904 RPS9 40S ribosomal protein S9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 53.292 53.573 2 0.00074282 21227 20181213_JW_Orientia_Karp_1_2 150.36 75.318 70237000 30296000 26204000 0 4311200 1810700 7615300 0 0 5253 97 4568 32260;32261;32262;32263;32264;32265 20782;20783;20784 20783 3 LFEISDIVIK Unmodified 1175.6802 0.680176 375 B7ZB32;Q9BR63;A8K666;B4DFM0;Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 70.098 70.264 2 0.006487 31546 20181213_JW_Orientia_Karp_1_3 99.802 36.383 5411100 0 1162900 1659600 0 0 0 2588600 0 5254 375 4569 32266;32267;32268 20785 20785 1 LFELEEQDLFR Unmodified 1437.714 0.71399532 36 A0A024R0S6;Q9NZN4;B4DLA1;B3KUH4;Q9NZN4-2;Q8NCJ3 EHD2 EH domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 70.232 70.353 2 6.7395E-19 31888 20181213_JW_Orientia_Karp_1_2 250.92 92.926 66369000 27332000 12122000 11708000 1823200 2550800 2273300 8560100 0 5255 36 4570 32269;32270;32271;32272;32273;32274;32275 20786;20787;20788 20787 3 LFELSELR Unmodified 1005.5495 0.54949617 481 Q5U0L9;B2RA10 HOMER3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 58.987 59.217 2 0.0069761 22755 20181213_JW_Orientia_Karp_2_3 113.5 38.31 21729000 9251100 0 5756100 1077800 2612000 3032200 0 0 5256 481 4571 32276;32277;32278;32279;32280;32281;32282 20789;20790;20791;20792 20792 4 LFFLQVK Unmodified 893.53747 0.53747492 1630;457 V9HWC0;P26038;Q6PJT4;Q6PKD3;Q05CU6;B0YJ88;P35241;P35241-5;V9GZ54;E9PQ82;E9PNV3;P35241-3;E7EQR4;Q6NUR7;B2R6J2;P15311;B7Z5V2;V9HW42;J7M2B1 HEL70;MSN;RDX;EZR;HEL-S-105;EZR-ROS1 Moesin;Radixin;Ezrin;Tyrosine-protein kinase receptor no no 0 0 0 0 By MS/MS By MS/MS 2 1 62.057 62.232 2 0.027535 26753 20181213_JW_Orientia_Karp_1_2 92.692 48.161 38661000 29712000 8948800 0 0 0 0 0 0 5257 1630;457 4572 32283;32284;32285 20793;20794 20794 2 LFGFFVGQVMK Oxidation (M) 1287.6686 0.66856545 1317 Karp_01279 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 2 1 1 1 1 67.032 67.242 2 4.2432E-07 25997 20181213_JW_Orientia_Karp_3_2 182.39 130.13 148940000 50892000 0 53113000 0 23460000 14444000 262500 6766600 5258 1317 4573 32286;32287;32288;32289;32290;32291;32292;32293;32294 20795;20796;20797;20798;20799;20800 20799 871 6 LFGFFVGQVMK Unmodified 1271.6737 0.67365083 1317 Karp_01279 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 72.2 72.277 2 1.2743E-05 33216 20181213_JW_Orientia_Karp_1_1 194.44 137.72 156480000 59682000 0 30499000 0 11534000 10731000 42369000 1661200 5259 1317 4573 32295;32296;32297;32298;32299;32300;32301 20801;20802;20803;20804;20805 20801 5 LFGGNFAHQASVAR Unmodified 1473.7477 0.74769548 634 B4DSE2;B4E0C7;Q53HP2;D3DQU2;O14773-2;O14773;B4DIV8 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 40.425 40.797 2 0.00048201 13168 20181213_JW_Orientia_Karp_1_3 146.5 92.16 35156000 0 15589000 6978600 0 946450 0 9057700 2583900 5260 634 4574 32302;32303;32304;32305;32306;32307;32308 20806;20807;20808;20809 20806 4 LFGIDNTK Unmodified 906.48108 0.48108226 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.643 48.893 2 0.0042232 17062 20181213_JW_Orientia_Karp_2_3 134.81 19.352 196360000 51052000 49650000 40445000 33422000 8146700 13645000 0 0 5261 1118 4575 32309;32310;32311;32312;32313;32314 20810;20811;20812;20813;20814;20815 20815 6 LFIADDLLAK Unmodified 1117.6383 0.63831118 1130 Karp_00369 yes yes 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 67.172 67.347 2 0.0033218 26434 20181213_JW_Orientia_Karp_2_2 108.74 50.884 11415000 0 0 6981400 0 4434000 0 0 0 5262 1130 4576 32315;32316;32317 20816;20817;20818 20818 3 LFIGGLNTETNEK Unmodified 1434.7355 0.73545904 1663 P38159;H0Y6E7;H3BT71;P38159-2;H3BR27;Q2VIN3;P38159-3;Q96E39;H3BNC1 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.248 52.593 2 2.2338E-35 18859 20181213_JW_Orientia_Karp_2_1 253.71 163.82 317490000 79729000 43296000 53072000 44656000 36314000 33645000 18393000 8387900 5263 1663 4577 32318;32319;32320;32321;32322;32323;32324;32325 20819;20820;20821;20822;20823;20824;20825;20826 20822 8 LFIGGLNTETNEK Deamidation (NQ) 1435.7195 0.71947463 1663 P38159;H0Y6E7;H3BT71;P38159-2;H3BR27;Q2VIN3;P38159-3;Q96E39;H3BNC1 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 1 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 57.01 57.442 2 0.0026911 21790 20181213_JW_Orientia_Karp_2_3 132.17 46.638 24794000 0 0 9860500 4128600 0 5862300 218920 4724200 5264 1663 4577 32326;32327;32328;32329;32330;32331 20827;20828 20828 1115 2 LFIGGLNVQTSESGLR Unmodified 1689.905 0.90498399 1788 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1 62.508 62.698 2 1.7553E-06 26652 20181213_JW_Orientia_Karp_1_3 171.99 122.71 36357000 7858700 7634200 15917000 0 3494400 1452200 0 0 5265 1788 4578 32332;32333;32334;32335;32336;32337;32338 20829;20830;20831;20832;20833 20831 5 LFIGGLPNYLNDDQVK Unmodified 1804.9359 0.93594977 697 K7ENG2;B5BU25;P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 By MS/MS 1 69.654 69.654 2 0.027453 31528 20181213_JW_Orientia_Karp_1_1 98.592 61.745 0 0 0 0 0 0 0 0 0 5266 697 4579 32339 20834 20834 1 LFIGGLSFETTDDSLR Unmodified 1769.8836 0.88357984 1700;1858 P51991;B4E3E6;B4DDB6;P51991-2;Q65ZQ3 HNRNPA3;HNRPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.363 72.433 2 2.8833E-28 29572 20181213_JW_Orientia_Karp_2_3 238.01 160.72 284960000 66285000 29390000 46051000 44323000 22894000 20792000 37621000 17606000 5267 1700;1858 4580 32340;32341;32342;32343;32344;32345;32346;32347 20835;20836;20837;20838;20839;20840;20841;20842 20840 8 LFIGGLSFETTDESLR Unmodified 1783.8992 0.89922991 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q6IPF2;Q0VAC0;F8VZ49;A0A024RC46;B4E0B5;A0A024QZ98;Q32P51;F8VTQ5;B4DP35;F8W646 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.764 71.842 2 4.4082E-114 32514 20181213_JW_Orientia_Karp_1_3 326.79 242.1 372490000 78171000 40282000 61800000 27986000 55377000 42339000 66535000 0 5268 209 4581 32348;32349;32350;32351;32352;32353;32354 20843;20844;20845;20846;20847;20848;20849;20850 20845 8 LFIGGLSFETTEESLR Unmodified 1797.9149 0.91487997 191 A0A024RA27;A0A024RA61;P22626-2;P22626;I6L957 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.211 71.318 2 1.3585E-62 32612 20181213_JW_Orientia_Karp_1_1 274.8 199.24 466720000 77012000 78923000 66414000 41476000 70956000 46643000 85300000 0 5269 191 4582 32355;32356;32357;32358;32359;32360;32361 20851;20852;20853;20854;20855;20856;20857 20851 7 LFIGNLPR Unmodified 928.54944 0.54943659 402 E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;E9PB51;A8K9U0;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04;Q9BWF3 RBM4B;RBM4 RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 53.736 54.002 2 0.0083903 21896 20181213_JW_Orientia_Karp_1_1 108.98 13.19 34197000 12939000 4410300 3250200 2812500 3620800 7163800 0 0 5270 402 4583 32362;32363;32364;32365;32366;32367;32368 20858;20859;20860;20861 20858 4 LFILNNYAQVSCYDLNSMK Oxidation (M) 2308.0868 0.086789457 1300 Karp_01233 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 1 67.395 67.68 2;3 0.02558 26362 20181213_JW_Orientia_Karp_3_2 69.289 27.22 14552000 0 1937000 2306000 0 4020400 0 3758400 2530100 5271 1300 4584 32369;32370;32371;32372;32373;32374 20862;20863 20863 859 2 LFKPGQEAVK Unmodified 1115.6339 0.63389451 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 28.858 29.267 3 0.0097388 7456 20181213_JW_Orientia_Karp_1_3 94.692 34.256 204000000 0 68501000 63795000 5867800 13681000 7063400 37108000 7985200 5272 25 4585 32375;32376;32377;32378;32379;32380;32381 20864;20865;20866 20864 3 LFLGNITILK Unmodified 1130.7063 0.70633117 1227 Karp_00894 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 68.259 68.436 2 0.0015668 30597 20181213_JW_Orientia_Karp_1_2 117.53 60.423 18492000 5215900 3900800 2874200 0 2134300 1581800 0 2785200 5273 1227 4586 32382;32383;32384;32385;32386;32387;32388 20867;20868;20869 20867 3 LFNDTITLLEDEVASGSNSSEIAK Deamidation (NQ) 2553.2334 0.23337316 1116 Karp_00304 yes yes 0 1 0 0 By MS/MS 1 75.018 75.018 2 0.028148 34952 20181213_JW_Orientia_Karp_1_1 87.411 60.682 0 0 0 0 0 0 0 0 0 5274 1116 4587 32389 20870 20870 494 1 LFNDTITLLEDEVASGSNSSEIAK Unmodified 2552.2494 0.24935757 1116 Karp_00304 yes yes 0 0 0 0 By matching By MS/MS 1 1 73.899 73.924 2 1.3338E-07 34279 20181213_JW_Orientia_Karp_1_2 177.07 121.09 26575000 13049000 13526000 0 0 0 0 0 0 5275 1116 4587 32390;32391 20871;20872 20871 2 LFNHLSAVSESIQALGWVAMAPK Oxidation (M) 2484.2835 0.28351543 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;Q01518;Q5T0R1;Q01518-2;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R9;B4DNY3;B4DNA3;B4DUZ8 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 71.445 71.544 3 0.0022919 32761 20181213_JW_Orientia_Karp_1_1 95.307 63.357 22121000 12901000 7601500 0 1618100 0 0 0 0 5276 498 4588 32392;32393;32394 20873 20873 323 1 LFPDTQVVIGPVIK Unmodified 1524.8916 0.89156576 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS 1 69.03 69.03 2 0.035494 31100 20181213_JW_Orientia_Karp_1_1 90.434 54.474 0 0 0 0 0 0 0 0 0 5277 1376 4589 32395 20874 20874 1 LFPNKEDYISR Unmodified 1380.7038 0.70376498 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 40.006 40.27 3 0.030213 12596 20181213_JW_Orientia_Karp_2_3 80.245 18.429 54688000 2345100 0 0 0 12433000 2065900 37844000 0 5278 1068;1081;1083;1086;1151;1356 4590 32396;32397;32398;32399 20875 20875 1 LFQCLLHR Unmodified 1085.5804 0.58041915 1591 Q53T09;P13010 XRCC5 X-ray repair cross-complementing protein 5 yes no 0 0 0 0 By MS/MS 1 44.229 44.579 3 0.015387 15486 20181213_JW_Orientia_Karp_1_2 89.296 47.866 3364300 0 3364300 0 0 0 0 0 0 5279 1591 4591 32400 20876 20876 1 LFQEDDEIPLYLK Unmodified 1621.8239 0.8239397 853 Q496I0;D6RIE3;D6RGV5;H0UI06;P14406 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.781 68.976 2 7.5752E-25 31098 20181213_JW_Orientia_Karp_1_1 232.17 115.65 232170000 41786000 57260000 54711000 10853000 17912000 11734000 27988000 9923500 5280 853 4592 32401;32402;32403;32404;32405;32406;32407;32408 20877;20878;20879;20880;20881;20882;20883;20884;20885 20877 9 LFQLPHSK Unmodified 968.54435 0.54435122 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 37.218 37.655 2 0.0099327 10961 20181213_JW_Orientia_Karp_2_1 104.06 45.076 26532000 0 13328000 5980800 2811500 0 0 4411800 0 5281 1449 4593 32409;32410;32411;32412 20886;20887;20888 20888 3 LFQTIIQMTQNEDLRENMLR 2 Oxidation (M);3 Deamidation (NQ) 2527.1934 0.19343937 1905 Q8IYU2-4;Q8IYU2 HACE1 E3 ubiquitin-protein ligase HACE1 yes no 0 3 2 1 By matching By matching By matching By MS/MS 1 1 1 1 62.291 62.519 3 0.032308 23388 20181213_JW_Orientia_Karp_3_2 47.223 14.528 49327000 24327000 0 0 0 11794000 8538900 0 4666800 5282 1905 4594 32413;32414;32415;32416 20889 20889 1194;2041;2042 1 LFRPEMSDMEIK 2 Oxidation (M) 1526.7109 0.71090055 1167 Karp_00621 yes yes 0 0 2 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 35.291 35.575 3 0.001153 10240 20181213_JW_Orientia_Karp_3_1 127.87 84.365 91935000 27770000 21225000 21674000 0 7502500 2633300 11131000 0 5283 1167 4595 32417;32418;32419;32420;32421;32422 20890;20891;20892 20892 699;700 2 LFRPEMSDMEIK Oxidation (M) 1510.716 0.71598593 1167 Karp_00621 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS 1 1 1 41.821 41.988 3 0.0011873 13930 20181213_JW_Orientia_Karp_1_2 144.28 104.22 62562000 27707000 32988000 0 0 1866400 0 0 0 5284 1167 4595 32423;32424;32425 20893;20894;20895;20896 20895 699;700 4 LFSIENVK Unmodified 948.52803 0.52803245 1200 Karp_00819 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 49.527 49.757 2 0.0041559 17345 20181213_JW_Orientia_Karp_2_1 147.34 49.863 226570000 51476000 0 62758000 61263000 17593000 33482000 0 0 5285 1200 4596 32426;32427;32428;32429;32430 20897;20898;20899;20900;20901 20899 5 LFTAESLIGLK Unmodified 1190.6911 0.69107503 432 B0YIW5;Q6MZV5;B0YIW6;P48444;P48444-2 ARCN1;DKFZp686M09245 Coatomer subunit delta yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 66 66.11 2 0.0026887 28799 20181213_JW_Orientia_Karp_1_3 114.97 59.857 21343000 8429100 3119100 6113200 0 2704100 977220 0 0 5286 432 4597 32431;32432;32433;32434;32435 20902;20903;20904;20905 20903 4 LFTFHADICTLPDTEK Unmodified 1906.9135 0.91349976 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 2 2 58.633 58.965 2;3 9.3331E-06 22539 20181213_JW_Orientia_Karp_2_3 157.09 108.38 833360000 58970000 57951000 99683000 96998000 227740000 246370000 3548600 42102000 + 5287 792 4598 32436;32437;32438;32439;32440;32441;32442;32443;32444;32445;32446;32447;32448 20906;20907;20908;20909;20910;20911;20912;20913 20911 8 LFTMEMFTNTIK Unmodified 1474.72 0.72000868 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 69.616 69.759 2 1.1399E-30 31745 20181213_JW_Orientia_Karp_1_1 248.09 138.61 92871000 30170000 0 19870000 0 10315000 5161400 20581000 6774100 5288 1449 4599 32449;32450;32451;32452;32453;32454 20914;20915;20916;20917;20918;20919 20914 6 LFTSTGLK Unmodified 865.49092 0.49091866 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 40.822 41.122 2 0.01658 12752 20181213_JW_Orientia_Karp_2_1 93.195 26.766 25020000 9037900 6259500 2448800 2205700 1402300 0 3666000 0 5289 1764 4600 32455;32456;32457;32458;32459;32460 20920 20920 1 LFTVSETECLGACR Unmodified 1641.7491 0.74907697 1408 Karp_02225 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 53.127 53.611 2 0.0041482 18924 20181213_JW_Orientia_Karp_3_1 123.01 87.099 12385000 0 0 0 5887700 4579200 0 1918300 0 5290 1408 4601 32461;32462;32463 20921 20921 1 LFVGGLK Unmodified 732.45341 0.45341094 1788 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 43.015 43.308 2 0.018164 14641 20181213_JW_Orientia_Karp_3_1 105.42 0 629600000 311810000 80016000 45131000 28900000 6419800 5760100 151570000 0 5291 1788 4602 32464;32465;32466;32467;32468;32469;32470;32471;32472;32473;32474;32475;32476;32477 20922;20923;20924;20925;20926;20927;20928;20929 20929 8 LFVGNLPADITEDEFK Unmodified 1806.904 0.90398093 1622 Q9BSV4;Q86VG2;P23246;P23246-2;Q6PIX2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 70.786 70.911 2 0.0036227 32253 20181213_JW_Orientia_Karp_1_2 123.95 85.142 211240000 68421000 43792000 0 0 23127000 12721000 53205000 9970500 5292 1622 4603 32478;32479;32480;32481;32482;32483 20930;20931;20932;20933 20931 4 LFVQDLATR Unmodified 1061.5869 0.58694431 834 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;B4DS27 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 0 0 0 0 By MS/MS By MS/MS 1 1 52.273 52.548 2 0.013756 20256 20181213_JW_Orientia_Karp_1_3 111.61 50.697 0 0 0 0 0 0 0 0 0 5293 834 4604 32484;32485 20934;20935 20935 2 LFVTNDAATILR Unmodified 1332.7402 0.74015049 1695 Q53HU0;P50990;P50990-2;H7C4C8;Q7Z759 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 60.122 60.415 2 1.9598E-08 25310 20181213_JW_Orientia_Karp_1_3 194.48 141.39 67775000 19064000 10267000 29124000 1776400 3669700 3709600 163820 0 5294 1695 4605 32486;32487;32488;32489;32490;32491;32492 20936;20937;20938 20937 3 LFYADHPFIFLVR Unmodified 1636.8766 0.87658439 115 A0A024R5K8;P50454;B4DN87;A8K259;E9PKH2;H0YEP8 SERPINH1 Serpin H1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 69.891 70.004 3 0.027903 27902 20181213_JW_Orientia_Karp_2_2 58.674 23.99 10774000 3490700 0 0 0 1955100 1148300 4179800 0 5295 115 4606 32493;32494;32495;32496 20939 20939 1 LFYYVNK Unmodified 945.496 0.49600404 1181 Karp_00658 yes yes 0 0 0 0 By MS/MS 1 46.161 46.161 2 0.03362 16707 20181213_JW_Orientia_Karp_1_1 86.935 45.707 12165000 12165000 0 0 0 0 0 0 0 5296 1181 4607 32497 20940 20940 1 LGAPQQPGPGPPPSR Unmodified 1454.763 0.7630112 548 B3KY04;Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 36.727 37.061 2 0.0014019 11813 20181213_JW_Orientia_Karp_1_1 129.34 80.919 136980000 36252000 46715000 39468000 3225900 2632700 0 8685500 0 5297 548 4608 32498;32499;32500;32501;32502;32503;32504 20941;20942;20943;20944;20945 20941 5 LGAPQTHLGLK Unmodified 1133.6557 0.65569258 12 A0A024QZ77;Q96C19;H0Y4Y4;Q53SA2;Q7Z2R5;B4DEE0;A0A024R493;Q59EU6;Q9BUP0-2;Q9BUP0;C9JTV4;Q8WYH2 EFHD2;FLJ13612;MST133;EFHD1;PP1187 EF-hand domain-containing protein D2;EF-hand domain-containing protein D1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 36.143 36.568 3 0.015098 10094 20181213_JW_Orientia_Karp_2_2 87.568 55.153 5455300 0 0 0 935850 1781500 1187700 1550200 0 5298 12 4609 32505;32506;32507;32508 20946;20947 20947 2 LGAVIEYGNAIPMK Oxidation (M) 1490.7803 0.78030075 1455 Karp_02592 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 52.77 53.097 2 0.01228 21228 20181213_JW_Orientia_Karp_1_1 90.685 29.288 16472000 5729300 3867800 3452100 0 1857800 0 1320500 244050 5299 1455 4610 32509;32510;32511;32512;32513;32514 20948 20948 1065 1 LGDLVIEGNNISK Deamidation (NQ) 1371.7246 0.72456001 1315 Karp_01271 yes yes 0 1 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 55.087 55.459 2 0.027499 20510 20181213_JW_Orientia_Karp_2_1 91.093 33.495 81608000 0 0 46185000 8580300 16676000 10055000 0 111600 5300 1315 4611 32515;32516;32517;32518;32519 20949 20949 747 1 LGDLYEEEMR Oxidation (M) 1269.5547 0.55471749 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 41.42 41.74 2 7.9096E-05 12712 20181213_JW_Orientia_Karp_2_2 148.94 91.767 1859600000 468040000 528560000 378060000 88860000 62939000 89378000 212700000 31098000 5301 1571 4612 32520;32521;32522;32523;32524;32525;32526;32527 20950;20951;20952;20953;20954;20955;20956;20957;20958;20959;20960 20955 1190 11 LGDVISIQPCPDVK Unmodified 1539.7967 0.79667909 1708 V9HW80;P55072;Q9HAP1;C9JUP7;C9IZA5 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By MS/MS 1 1 56.898 56.898 2 0.0021268 23321 20181213_JW_Orientia_Karp_1_2 142.07 73.442 14583000 14583000 0 0 0 0 0 0 0 5302 1708 4613 32528;32529 20961;20962 20962 2 LGEFAPTR Unmodified 889.46577 0.46576654 1238 Karp_00905 yes yes 0 0 0 0 By MS/MS By MS/MS 1 2 38.666 38.95 2 0.011375 11765 20181213_JW_Orientia_Karp_2_1 101.6 38.294 48890000 0 0 0 20658000 28232000 0 0 0 5303 1238 4614 32530;32531;32532 20963;20964 20963 2 LGEHNIDVLEGNEQFINAAK Unmodified 2210.0968 0.096760517 787 CON__P00761 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 3 1 2 1 2 2 2 1 55.895 56.196 2;3;4 2.3907E-29 22434 20181213_JW_Orientia_Karp_1_3 264.85 184.68 15744000000 7754600000 5023800000 280660000 1037100000 99319000 654910000 6396600 886910000 + 5304 787 4615 32533;32534;32535;32536;32537;32538;32539;32540;32541;32542;32543;32544;32545;32546 20965;20966;20967;20968;20969;20970;20971;20972 20969 7 LGEHNIDVLEGNEQFINAAK Deamidation (NQ) 2211.0808 0.080776102 787 CON__P00761 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 3 3 3 1 58.339 58.619 2;3 4.8683E-128 22120 20181213_JW_Orientia_Karp_2_1 319.82 238.14 2177100000 258040000 66176000 246130000 564350000 475060000 318240000 0 249070000 + 5305 787 4615 32547;32548;32549;32550;32551;32552;32553;32554;32555;32556;32557;32558;32559;32560;32561;32562;32563 20973;20974;20975;20976;20977;20978;20979;20980 20976 265;266 8 LGEHNIEVLEGNEQFINAAK Unmodified 2224.1124 0.11241058 794 Q86W17;Q53ZX9;Q53ZX8;Q53ZX7;Q45KI0;H0Y8D1;CON__P07477;E7EQ64;P07477;Q6PK75;A6XMV8;Q5NV56;Q3SY20;Q3SY19;Q7Z5F3;A6XMV9;Q8NHM4;P07478 PRSS1;PRSS2;TRY8;PRSS3P2 Trypsin-1;Alpha-trypsin chain 1;Alpha-trypsin chain 2;Putative trypsin-6;Trypsin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 55.968 56.368 3 1.0308E-07 20763 20181213_JW_Orientia_Karp_2_2 151.41 92.549 5407200000 0 0 0 24175000 5383000000 0 0 0 + 5306 794 4616 32564;32565 20981;20982 20982 2 LGELPSWILMR Oxidation (M) 1329.7115 0.7114929 584 C9JJT5;C9JU26;G3V325;B4DJ38;P56134-4;P56134-3;P56134-2;P56134 ATP5J2-PTCD1;ATP5J2 ATP synthase subunit f, mitochondrial yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 69.217 69.353 2 0.013818 30912 20181213_JW_Orientia_Karp_1_3 87.258 44.659 8380200 5484200 0 2080800 0 0 0 0 815140 5307 584 4617 32566;32567;32568 20983 20983 357 1 LGEMWNNTAADDK Oxidation (M) 1479.63 0.63000769 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0;D3DQY9 HMGB1;HMGB1P1;hCG_1991922 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 38.589 38.827 2 0.0018448 12671 20181213_JW_Orientia_Karp_1_1 124.12 72.848 21072000 4965300 0 0 9009200 2855200 4242500 0 0 5308 264 4618 32569;32570;32571;32572 20984;20985;20986 20984 186 3 LGEMWNNTAADDK Oxidation (M);Deamidation (NQ) 1480.614 0.61402328 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0;D3DQY9 HMGB1;HMGB1P1;hCG_1991922 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 1 1 0 By MS/MS 1 41.687 41.687 2 0.016563 14254 20181213_JW_Orientia_Karp_1_1 96.604 54.9 0 0 0 0 0 0 0 0 0 5309 264 4618 32573 20987 20987 98;99 186 1 LGEMWNNTAADDK Unmodified 1463.6351 0.63509307 264 Q5T7C4;Q5T7C6;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0;D3DQY9 HMGB1;HMGB1P1;hCG_1991922 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 0 By MS/MS 1 45.457 45.708 2 0.031195 15429 20181213_JW_Orientia_Karp_2_3 78.548 49.075 2074800 0 0 0 0 0 2074800 0 0 5310 264 4618 32574 20988 20988 1 LGENASYGLSNTLSALGLR Unmodified 1935.0062 0.0061545955 1331 Karp_01369 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 71.809 71.91 3 0.0028445 26259 20181213_JW_Orientia_Karp_3_1 93.115 53.362 9999100 0 0 0 0 2077100 0 7922000 0 5311 1331 4619 32575;32576 20989;20990 20990 2 LGESQTLQQFSR Unmodified 1392.6997 0.69974224 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1 2 44.228 44.55 2 0.00021272 15340 20181213_JW_Orientia_Karp_1_3 179.94 113.37 53068000 12648000 15498000 10955000 2540700 1356100 2354600 7715600 0 5312 316 4620 32577;32578;32579;32580;32581;32582;32583;32584;32585 20991;20992;20993;20994 20994 4 LGEYGFQNALIVR Deamidation (NQ) 1479.7722 0.7721789 792 CON__P02769 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 64.519 64.686 2 5.7948E-58 25502 20181213_JW_Orientia_Karp_2_3 271.62 195.52 268030000 71451000 47506000 48764000 9847500 53651000 36813000 0 0 + 5313 792 4621 32586;32587;32588;32589;32590;32591;32592 20995;20996;20997;20998;20999;21000;21001;21002 21001 269 8 LGEYGFQNALIVR Unmodified 1478.7882 0.78816332 792 CON__P02769 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 61.814 62.157 2 2.4678E-72 24307 20181213_JW_Orientia_Karp_2_1 294.15 223.74 966010000 237650000 372380000 131000000 74559000 0 0 45627000 104790000 + 5314 792 4621 32593;32594;32595;32596;32597;32598;32599 21003;21004;21005;21006 21003 4 LGFEDGSVLK Unmodified 1063.555 0.55497548 845 V9HW74;D6R956;P09936;A6NLJ7;D6R974;D6RE83;B2RD14 HEL-117;UCHL1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes no 0 0 0 0 By MS/MS 1 52.542 52.693 2 0.037762 19015 20181213_JW_Orientia_Karp_2_2 86.136 25.337 0 0 0 0 0 0 0 0 0 5315 845 4622 32600 21007 21007 1 LGFEEFK Unmodified 868.43307 0.43306943 1552 P04632;K7ELJ7;K7EIV0;A0A075B7C0;U3KQE2;K7EKD8;U3KPR7;Q96L46 CAPNS1;CAPNS2 Calpain small subunit 1;Calpain small subunit 2 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 50.017 50.185 2 0.020582 19258 20181213_JW_Orientia_Karp_1_1 101.69 0.36206 97083000 53845000 41742000 0 0 1496200 0 0 0 5316 1552 4623 32601;32602;32603 21008 21008 1 LGFGSFVEK Unmodified 982.51238 0.51238239 343 E9PEE8;B4E2B8;A8K2N5;P18564-2;P18564 ITGB6 Integrin beta;Integrin beta-6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 52.776 53.026 2 0.0020406 20654 20181213_JW_Orientia_Karp_1_3 118.33 0 101690000 21607000 36619000 19501000 8554500 4268400 11138000 0 0 5317 343 4624 32604;32605;32606;32607;32608;32609 21009;21010;21011;21012;21013 21011 5 LGFHLPLEVAYQR Unmodified 1541.8354 0.83544786 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;Q96IE3 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS 1 61.224 61.224 3 0.026868 26419 20181213_JW_Orientia_Karp_1_1 91.313 31.744 0 0 0 0 0 0 0 0 0 5318 1803 4625 32610 21014 21014 1 LGFQVWLK Unmodified 989.56984 0.56983769 1761 Q5U0D2;Q01995;Q53GC9;E9PJ32 TAGLN Transgelin yes no 0 0 0 0 By matching By MS/MS 1 1 62.844 63.198 2 0.010682 23676 20181213_JW_Orientia_Karp_3_2 102.72 16.633 7118500 0 0 5314500 0 0 0 0 1804000 5319 1761 4626 32611;32612 21015 21015 1 LGGGSEDAKEIMQHRFFAGIVWQHVYEK Oxidation (M);2 Deamidation (NQ) 3249.5553 0.55533319 427 G3V3X1;G3V2I6;B3KXD7;Q9BV07;B3KVH4;B0LPE5;P31749-2;P31749 AKT1 RAC-alpha serine/threonine-protein kinase yes no 0 2 1 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 29.132 29.534 4 0.028603 6552 20181213_JW_Orientia_Karp_3_2 40.937 11.916 43886000 7887800 5594000 0 14714000 2299800 0 9328800 4061600 5320 427 4627 32613;32614;32615;32616;32617;32618 21016 21016 1445;1446 1 LGGHGPSFPLK Unmodified 1108.6029 0.60292873 1591 Q53T09;P13010 XRCC5 X-ray repair cross-complementing protein 5 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 37.793 38.093 3 0.037073 12402 20181213_JW_Orientia_Karp_1_1 63.32 22.326 19203000 11563000 7194500 0 445740 0 0 0 0 5321 1591 4628 32619;32620;32621 21017 21017 1 LGGSAVISLEGK Unmodified 1129.6343 0.63428844 1625 V9HWI5;P23528;G3V1A4;E9PK25 HEL-S-15;CFL1 Cofilin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 47.656 48.002 2 6.8977E-08 16563 20181213_JW_Orientia_Karp_2_3 192.38 108.43 118620000 12162000 22184000 13627000 24774000 14660000 9235600 67579 21908000 5322 1625 4629 32622;32623;32624;32625;32626;32627;32628;32629 21018;21019;21020;21021;21022;21023 21023 6 LGGSAVISLEGKPL Unmodified 1339.7711 0.77111627 1625 V9HWI5;P23528;G3V1A4;E9PK25 HEL-S-15;CFL1 Cofilin-1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 57.31 57.655 2 7.0394E-24 21846 20181213_JW_Orientia_Karp_2_3 232.56 193.81 701810000 111420000 92310000 62962000 104940000 150880000 121900000 3592800 53812000 5323 1625 4630 32630;32631;32632;32633;32634;32635;32636;32637 21024;21025;21026;21027;21028;21029;21030;21031;21032 21030 9 LGGSPTSLGTWGSWIGPDHDK Unmodified 2167.0334 0.033431979 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 61.331 61.604 3 0.041749 26487 20181213_JW_Orientia_Karp_1_2 37.334 14.625 46959000 7907400 7822800 7949400 3892700 10134000 5615800 0 3636800 5324 588 4631 32638;32639;32640;32641;32642;32643;32644 21033 21033 1 LGGVEIAR Unmodified 813.47085 0.47085192 1236 Karp_00903 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 2 1 1 37.866 38.141 2 0.0097168 11852 20181213_JW_Orientia_Karp_1_3 104.75 33.451 24821000 13594000 3544800 6959700 721830 0 0 0 0 5325 1236 4632 32645;32646;32647;32648;32649 21034;21035 21035 2 LGHELQQAGLK Unmodified 1192.6564 0.65642086 118 A0A024R5M9;Q4LE64;Q14980-2;Q14980;Q59HB8;Q7Z757;Q14980-4;Q14980-3;Q96HN5;H0YFY6;Q14980-5;K4DIE0 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 31.471 31.671 3 0.0016491 8671 20181213_JW_Orientia_Karp_1_3 133.89 56.161 13119000 7632500 5349100 0 0 0 137350 0 0 5326 118 4633 32650;32651;32652;32653 21036;21037 21037 2 LGHPDTLNQGEFK Unmodified 1454.7154 0.7153923 446 B2R4M6;P06702 S100A9 Protein S100;Protein S100-A9 yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.226 35.584 3 0.0010583 10243 20181213_JW_Orientia_Karp_3_1 130.56 70.075 48739000 11734000 5745700 5479600 1952800 4142800 2044900 14269000 3370300 5327 446 4634 32654;32655;32656;32657;32658;32659;32660;32661 21038;21039 21038 2 LGHPEALSAGTGSPQPPSFTYAQQR Unmodified 2596.267 0.26701374 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;B4DQR8;H7C3D3 ZYX Zyxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 49.021 49.367 3 0.00063179 17161 20181213_JW_Orientia_Karp_2_1 90.084 63.244 641240000 118800000 106100000 130530000 92057000 65620000 91345000 177210 36615000 5328 1812 4635 32662;32663;32664;32665;32666;32667;32668;32669 21040;21041;21042;21043;21044;21045 21043 6 LGIHEDSTNR Unmodified 1140.5523 0.55234972 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 HSP90AB1 Heat shock protein HSP 90-beta yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 23.126 23.478 3 0.01865 5083 20181213_JW_Orientia_Karp_1_2 91.636 55.051 23225000 7544200 9672800 0 986190 867720 641120 2530200 982540 5329 251 4636 32670;32671;32672;32673;32674;32675;32676 21046;21047 21046 2 LGINPNHSNQVVR Unmodified 1446.7692 0.76915921 1173 Karp_00627 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 31.68 31.98 3 0.011441 9339 20181213_JW_Orientia_Karp_1_1 94.191 56.398 155380000 64217000 69038000 0 22119000 0 0 0 0 5330 1173 4637 32677;32678;32679 21048;21049;21050 21048 3 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR Unmodified 3546.5315 0.53154161 1057 K9JA46;P07900;P07900-2;Q8TBA7;O75322;Q96HX7 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 73.14 73.206 3 0.0066392 33554 20181213_JW_Orientia_Karp_1_3 50.96 39.705 49100000 0 11870000 21905000 0 0 0 15325000 0 5331 1057 4638 32680;32681;32682 21051 21051 1 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR Unmodified 3531.6377 0.63766166 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 HSP90AB1 Heat shock protein HSP 90-beta yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 73.508 73.523 3 0.020316 33734 20181213_JW_Orientia_Karp_1_3 39.816 17.256 201010000 60988000 70724000 69295000 0 0 0 0 0 5332 251 4639 32683;32684;32685 21052 21052 1 LGLGLEFQA Unmodified 946.51238 0.51238239 1616 P21796;B3KTS5;B4DEI3 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By MS/MS 1 73.345 73.395 2 0.021424 27221 20181213_JW_Orientia_Karp_3_1 83.265 38.87 7804700 0 0 0 0 0 0 7804700 0 5333 1616 4640 32686 21053 21053 1 LGLLDNHSSEFNVTR Unmodified 1700.8482 0.84819739 533 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776-3;P36776-2;P36776;B4DPX0;A4VCH6;K7ER56;K7ER27 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 51.214 51.463 3 0.040771 20126 20181213_JW_Orientia_Karp_1_1 53.924 22.096 23531000 12982000 0 5996100 4552400 0 0 0 0 5334 533 4641 32687;32688;32689 21054 21054 1 LGLSLVVPGGGIK Unmodified 1208.7493 0.74925861 1862 Q6FHY4;Q99747-2;Q99747 NAPG Gamma-soluble NSF attachment protein yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 63.818 64.046 2 0.030322 24239 20181213_JW_Orientia_Karp_3_2 79.148 38.119 3825800 2016000 0 0 114350 0 1347800 0 347620 5335 1862 4642 32690;32691;32692;32693 21055 21055 1 LGLSTLGELK Unmodified 1029.607 0.60701105 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q53GA0;Q68E05;O43399-2;O43399-4;O43399-3;B4DDV4;Q5J908;O43399-6 TPD52L2;DKFZp686A1765 Tumor protein D54 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 55.261 55.576 2 0.00077408 22122 20181213_JW_Orientia_Karp_1_3 128.86 37.789 61826000 6891800 16985000 10843000 3622300 9652800 13639000 0 192790 5336 1507 4643 32694;32695;32696;32697;32698;32699;32700 21056;21057;21058;21059 21057 4 LGNAVISNIQNGNIK Deamidation (NQ) 1554.8366 0.83657007 1420 Karp_02261 yes yes 0 1 0 0 By MS/MS By matching By MS/MS 1 1 1 49.291 49.466 2 0.0026385 16408 20181213_JW_Orientia_Karp_3_2 124.42 80.653 8131600 3418200 4713400 0 0 0 0 0 0 5337 1420 4644 32701;32702;32703 21060;21061 21061 941 2 LGNDSENHPTVLLTTQK Unmodified 1865.9483 0.94830537 1190 Karp_00705 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 40.794 41.124 3 0.0048443 13501 20181213_JW_Orientia_Karp_1_2 120.32 80.105 158370000 50796000 36461000 39221000 12826000 0 0 19067000 0 5338 1190 4645 32704;32705;32706;32707;32708 21062;21063;21064;21065;21066 21063 5 LGNHQEAVENFDTAIK Unmodified 1784.8693 0.86932676 1323 Karp_01308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 41.589 41.933 3 0.013623 13869 20181213_JW_Orientia_Karp_1_2 113.67 81.197 97054000 21574000 31678000 21481000 5839400 0 2808900 12391000 1281300 5339 1323 4646 32709;32710;32711;32712;32713;32714;32715 21067;21068;21069;21070;21071;21072;21073 21068 7 LGNIDLLPEEYSLIAEPK Unmodified 2013.067 0.067023518 1123 Karp_00323 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.227 73.285 2 8.8332E-05 33799 20181213_JW_Orientia_Karp_1_2 141.59 64.93 230410000 56713000 45735000 37303000 0 15890000 18132000 41445000 15190000 5340 1123 4647 32716;32717;32718;32719;32720;32721;32722 21074;21075;21076;21077;21078;21079 21074 6 LGNIVVSR Unmodified 856.51305 0.51305109 1095 Karp_00244 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 38.051 38.416 2 0.0053943 10976 20181213_JW_Orientia_Karp_2_2 127.56 60.533 24344000 0 10879000 10549000 2916000 0 0 0 0 5341 1095 4648 32723;32724;32725;32726 21080;21081;21082 21082 3 LGPEEITR Unmodified 913.4869 0.48689592 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 37.802 38.194 2 0.025489 11866 20181213_JW_Orientia_Karp_1_3 85.161 28.44 82275000 0 33236000 29357000 0 0 4583400 9563600 5535600 5342 1170 4649 32727;32728;32729;32730;32731;32732 21083;21084 21084 2 LGPVSIFVGGGAGASYTGGTIEQHK Unmodified 2402.223 0.22302366 1372 Karp_02002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 58.596 58.896 3 0.00061938 22433 20181213_JW_Orientia_Karp_2_1 90.397 64.901 144290000 32233000 29450000 54216000 11560000 12944000 0 3884000 0 5343 1372 4650 32733;32734;32735;32736;32737;32738 21085;21086;21087;21088;21089;21090 21089 6 LGQELSELFENR Unmodified 1433.7151 0.71505795 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 62.67 62.929 2 6.59E-23 27164 20181213_JW_Orientia_Karp_1_2 232.56 155.02 115370000 36030000 28479000 26843000 2839200 12434000 8056900 0 684990 5344 1262 4651 32739;32740;32741;32742;32743;32744;32745;32746 21091;21092;21093;21094;21095;21096;21097 21092 7 LGQFQKAIKNYDLAIK 3 Deamidation (NQ) 1851.9982 0.99821567 1084 Karp_00147 yes yes 0 3 0 2 By MS/MS 1 68.349 68.598 2 0.013867 30755 20181213_JW_Orientia_Karp_1_2 96.23 56.649 4544500 0 4544500 0 0 0 0 0 0 5345 1084 4652 32747 21098 21098 435;1796;1797 0 LGQYEDAIENYDIAIK Unmodified 1853.9047 0.90470922 1323 Karp_01308 yes yes 0 0 0 0 By MS/MS 1 62.347 62.545 2 4.4563E-05 26545 20181213_JW_Orientia_Karp_1_3 150.34 74.874 13292000 0 0 13292000 0 0 0 0 0 5346 1323 4653 32748 21099 21099 1 LGSLVDEFK Unmodified 1006.5335 0.53351176 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;P12956-2;F5H1I8;B4E356;Q6IC76 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS 1 53.776 53.776 2 0.0056811 21684 20181213_JW_Orientia_Karp_1_1 102.62 45.072 15755000 15755000 0 0 0 0 0 0 0 5347 48 4654 32749 21100 21100 1 LGSNSLLDLIIFGR Unmodified 1516.8613 0.86132826 1427 Karp_02373 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 76.657 76.651 2 3.8128E-05 30996 20181213_JW_Orientia_Karp_3_2 165.58 118.98 30543000 6664800 4432700 2645600 3474600 2315600 2014900 7239000 1755800 5348 1427 4655 32750;32751;32752;32753;32754;32755;32756;32757 21101 21101 1 LGSTAPQVLSTSSPAQQAENEAK Unmodified 2313.1448 0.14483292 1826 Q53FF5;Q53FE8;Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 47.415 47.491 2;3 0.014428 16198 20181213_JW_Orientia_Karp_2_1 112.34 80.949 17212000 10292000 0 0 0 6920000 0 0 0 5349 1826 4656 32758;32759;32760 21102;21103 21102 2 LGTKPLVIQLPIGIEDTFK Unmodified 2081.2136 0.21362818 1094 Karp_00243 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 71.009 71.125 3 0.0012409 28557 20181213_JW_Orientia_Karp_2_2 110.77 101.36 311140000 72323000 45647000 32126000 0 40004000 19388000 97900000 3756200 5350 1094 4657 32761;32762;32763;32764;32765;32766;32767 21104;21105;21106;21107;21108;21109 21106 6 LGTNEHYQLTK Unmodified 1302.6568 0.65681479 1430 Karp_02387 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 29.912 30.181 3 0.019657 6895 20181213_JW_Orientia_Karp_2_2 68.44 20.349 37064000 9963700 11270000 4136400 9889500 1804700 0 0 0 5351 1430 4658 32768;32769;32770;32771;32772 21110;21111;21112 21112 3 LGTSVWGHEK Unmodified 1112.5615 0.56145784 1131 Karp_00376 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 31.111 31.427 2;3 0.0031827 8642 20181213_JW_Orientia_Karp_1_2 109.44 58.246 174450000 17699000 111500000 30671000 13616000 0 0 971400 0 5352 1131 4659 32773;32774;32775;32776;32777;32778;32779;32780;32781;32782;32783 21113;21114;21115;21116;21117;21118 21114 6 LGTVTNDVAAVVK Unmodified 1285.7242 0.72416608 1173 Karp_00627 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 48.965 49.281 2 0.00022754 18762 20181213_JW_Orientia_Karp_1_1 160.91 67.315 145820000 36928000 42675000 25246000 0 8444600 14716000 98838 17716000 5353 1173 4660 32784;32785;32786;32787;32788;32789;32790 21119;21120;21121;21122 21119 4 LGVAGQWR Unmodified 885.48209 0.48208531 845 V9HW74;D6R956;P09936;D6R974;D6RE83;B2RD14;D6RF53 HEL-117;UCHL1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 40.59 40.88 2 0.014182 13224 20181213_JW_Orientia_Karp_1_3 97.068 37.458 33110000 13142000 0 9902600 1337900 2161900 0 6565400 0 5354 845 4661 32791;32792;32793;32794;32795 21123 21123 1 LGVIEDHSNR Unmodified 1138.5731 0.57308516 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71;B4DHT9;Q58FF3 TRA1;HEL-S-125m;HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 27.477 27.778 3 0.011486 7356 20181213_JW_Orientia_Karp_1_1 89.029 41.323 38073000 8465100 16573000 6297700 0 2901100 782910 3053000 0 5355 1598 4662 32796;32797;32798;32799;32800;32801 21124;21125;21126 21124 3 LGVRPSQGGEAPR Unmodified 1322.7055 0.70549632 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.319 25.664 3 0.0012299 5630 20181213_JW_Orientia_Karp_2_1 195.72 139.31 354480000 40367000 85106000 136890000 10830000 24308000 12139000 31599000 13244000 5356 85 4663 32802;32803;32804;32805;32806;32807;32808;32809 21127;21128;21129;21130;21131;21132;21133;21134 21130 8 LGVSTGDELNPEK Unmodified 1357.6725 0.67252444 1444 Karp_02422 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 43.427 43.771 2 0.006609 14914 20181213_JW_Orientia_Karp_1_2 105.2 61.246 119790000 18930000 33377000 42489000 5525600 0 4529500 12387000 2549800 5357 1444 4664 32810;32811;32812;32813;32814;32815;32816;32817 21135;21136 21135 2 LGYSYGTGR Unmodified 972.46649 0.46649483 1414 Karp_02240 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 34.08 34.402 2 0.00078848 9967 20181213_JW_Orientia_Karp_1_3 144.12 107.94 222370000 92922000 38595000 50815000 11445000 10115000 3832500 14641000 0 5358 1414 4665 32818;32819;32820;32821;32822;32823;32824 21137;21138;21139;21140;21141;21142 21139 6 LGYVDQSR Unmodified 936.46649 0.46649483 1315 Karp_01271 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 31.478 31.748 2 0.034292 8037 20181213_JW_Orientia_Karp_2_1 80.219 39.337 40540000 15058000 14583000 6782500 3562400 0 554460 0 0 5359 1315 4666 32825;32826;32827;32828;32829 21143 21143 1 LHDDDNTDIELAELPDILK Deamidation (NQ) 2179.0532 0.053223947 1390 Karp_02139 yes yes 0 1 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 72.978 73.047 3 0.0020674 27020 20181213_JW_Orientia_Karp_3_1 103.88 61.604 48069000 9669700 6193000 7612200 0 8726500 0 15868000 0 5360 1390 4667 32830;32831;32832;32833;32834 21144;21145 21145 877 2 LHDDDNTDIELAELPDILK Unmodified 2178.0692 0.069208362 1390 Karp_02139 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 71.862 71.956 3 1.9081E-07 29316 20181213_JW_Orientia_Karp_2_1 156 121.28 743160000 165450000 61515000 85179000 23028000 101390000 63110000 240240000 3246400 5361 1390 4667 32835;32836;32837;32838;32839;32840;32841;32842;32843 21146;21147;21148;21149;21150;21151;21152 21148 6 LHDGSELIAELVGSDNK Unmodified 1795.8952 0.89520716 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1 1 2 62.896 63.18 2;3 1.8523E-06 21626 20181213_JW_Orientia_Karp_3_1 157.09 123.9 798240000 215800000 81269000 140960000 0 226790000 104510000 11244000 17662000 5362 1107 4668 32844;32845;32846;32847;32848;32849;32850;32851;32852;32853;32854 21153;21154;21155;21156;21157;21158;21159;21160;21161 21160 9 LHDGSELIAELVGSDNK Deamidation (NQ) 1796.8792 0.87922275 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS 1 64.195 64.346 3 0.028594 25020 20181213_JW_Orientia_Karp_2_2 79.471 42.899 6902300 0 0 0 0 6902300 0 0 0 5363 1107 4668 32855 21162 21162 478 1 LHDSVLTSTQVACYYDK Unmodified 1998.9357 0.93569177 1192 Karp_00723 yes yes 0 0 0 0 By MS/MS 1 47.114 47.724 2 0.0059966 15278 20181213_JW_Orientia_Karp_3_2 123.76 92.119 0 0 0 0 0 0 0 0 0 5364 1192 4669 32856 21163 21163 1 LHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR Unmodified 3922.0072 0.0072238131 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 1 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 64.833 65.116 5 0.018004 25323 20181213_JW_Orientia_Karp_2_2 39.799 16.632 107560000 0 8344900 0 0 50379000 37055000 5616800 6159300 5365 1571 4670 32857;32858;32859;32860;32861 21164;21165;21166 21164 3 LHFDDLVALYPEEK Unmodified 1687.8457 0.84573777 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 1 2 63.46 63.694 2;3 3.3949E-05 25170 20181213_JW_Orientia_Karp_2_1 167.18 126.45 243590000 99021000 27813000 46013000 3192300 31246000 28980000 115910 7206900 5366 1333 4671 32862;32863;32864;32865;32866;32867;32868;32869;32870;32871;32872;32873;32874;32875;32876;32877 21167;21168;21169;21170;21171;21172;21173;21174;21175;21176;21177 21172 11 LHFFMPGFAPLTSR Oxidation (M) 1635.8232 0.82316861 1566;1747;1550;1964;1823 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;Q3ZCM7;A0A075B736;Q5SQY0;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB8;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS 2 1 59.983 60.158 3 0.004136 25766 20181213_JW_Orientia_Karp_1_1 108.59 39.786 91248000 45027000 46221000 0 0 0 0 0 0 5367 1550;1566;1747;1823;1964 4672 32878;32879;32880 21178;21179;21180 21178 1156 3 LHFFMPGFAPLTSR Unmodified 1619.8283 0.82825399 1566;1747;1550;1964;1823 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;Q3ZCM7;A0A075B736;Q5SQY0;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB8;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 66.446 66.606 3 0.0038288 25622 20181213_JW_Orientia_Karp_3_2 140.45 89.795 111650000 23473000 9727300 55717000 0 7536100 7293300 0 7899200 5368 1550;1566;1747;1823;1964 4672 32881;32882;32883;32884;32885;32886 21181;21182;21183;21184;21185 21185 5 LHFNVIPK Unmodified 966.56509 0.56508666 1118 Karp_00308 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 41.761 41.944 2 0.0095746 13946 20181213_JW_Orientia_Karp_1_2 105.2 48.098 30961000 12826000 9008200 9126800 0 0 0 0 0 5369 1118 4673 32887;32888;32889 21186 21186 1 LHFQMEQIVYCQDQVYR Oxidation (M) 2272.0405 0.040507966 1611 P20591;F8W8T1;Q8NAA8 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 48.851 49.171 3 0.0024524 18687 20181213_JW_Orientia_Karp_1_1 104.26 65.48 25528000 9184300 12882000 0 0 0 0 0 3461500 5370 1611 4674 32890;32891;32892 21187 21187 1232 1 LHFQMEQIVYCQDQVYR Unmodified 2256.0456 0.045593344 1611 P20591;F8W8T1;Q8NAA8 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 56.558 56.741 3 0.026521 23676 20181213_JW_Orientia_Karp_1_1 88.19 63.396 46936000 20550000 11802000 14585000 0 0 0 0 0 5371 1611 4674 32893;32894;32895 21188;21189;21190 21188 3 LHHLVDEK Unmodified 989.52943 0.52942943 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 17.37 17.6 2 0.017029 3130 20181213_JW_Orientia_Karp_1_2 92.47 37.859 5352500 1282600 1916400 1339500 483150 0 0 330950 0 5372 1170 4675 32896;32897;32898;32899;32900 21191;21192;21193;21194;21195 21192 5 LHHVSPADSGEYVCR Unmodified 1725.7893 0.7893023 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 28.748 29.121 3 0.00075182 7987 20181213_JW_Orientia_Karp_1_1 184.11 145.07 102920000 30555000 18165000 6204800 2269000 1620600 0 22297000 21806000 5373 195 4676 32901;32902;32903;32904;32905;32906;32907 21196;21197 21196 2 LHIDETMLQELSNIK Unmodified 1782.9186 0.91858514 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 65.225 65.478 3 3.0256E-05 28374 20181213_JW_Orientia_Karp_1_3 151.99 89.952 12314000 0 4885300 7218100 0 0 0 0 211040 5374 1270 4677 32908;32909;32910;32911;32912 21198;21199;21200;21201 21200 4 LHIDETMLQELSNIK Oxidation (M) 1798.9135 0.91349976 1270 Karp_01078 yes yes 0 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 55.592 55.805 3 0.034116 22639 20181213_JW_Orientia_Karp_1_2 69.314 34.394 36579000 15778000 14711000 0 0 2853100 3237500 0 0 5375 1270 4677 32913;32914;32915;32916 21202 21202 1 LHIEEFFLK Unmodified 1174.6386 0.63864553 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By matching 1 1 58.42 58.519 2 0.019298 24743 20181213_JW_Orientia_Karp_1_1 84.568 49.273 14405000 7488300 0 6916300 0 0 0 0 0 5376 1149 4678 32917;32918 21203 21203 1 LHISFTDHK Unmodified 1096.5665 0.56654322 1088 Karp_00224 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 31.287 31.577 3 0.0033231 8795 20181213_JW_Orientia_Karp_1_2 96.034 42.682 25120000 5936000 17325000 1123200 0 0 295110 0 440370 5377 1088 4679 32919;32920;32921;32922;32923 21204;21205;21206 21205 3 LHIVQVVCK Unmodified 1094.627 0.62703499 1491 Q5SRT3;Q53FB0;O00299 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 36.653 37.056 2 0.012396 10945 20181213_JW_Orientia_Karp_2_3 89.55 54.112 8494400 0 0 5153200 1334600 0 1402600 0 603960 5378 1491 4680 32924;32925;32926;32927 21207 21207 1 LHLETPQPSPQEGGSVDIWR Unmodified 2245.1127 0.11274493 540 B3KUZ5;O14613 CDC42EP2 Cdc42 effector protein 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 54.824 55.146 3 0.0054685 20453 20181213_JW_Orientia_Karp_2_3 81.157 48.976 60630000 20754000 0 29410000 3415800 0 6758200 0 292350 5379 540 4681 32928;32929;32930;32931;32932;32933 21208;21209;21210 21210 3 LHLGIPEAVFVEDVDSFMK Oxidation (M) 2161.0765 0.076542347 841 D3DWY7;P61758 VBP1 Prefoldin subunit 3 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 71.007 71.14 3 8.6719E-11 28806 20181213_JW_Orientia_Karp_2_3 191.51 154.47 24248000 0 0 12437000 3857300 7953300 0 0 0 5380 841 4682 32934;32935;32936;32937 21211;21212;21213 21213 485 3 LHLLASK Unmodified 780.48577 0.48577371 1062 Karp_00006 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 28.666 29.01 2 0.017678 6217 20181213_JW_Orientia_Karp_3_2 106.42 21.056 54371000 10066000 12410000 10933000 0 3031500 3044900 6813300 8072700 5381 1062 4683 32938;32939;32940;32941;32942;32943;32944 21214;21215 21215 2 LHQCGLPK Unmodified 951.49602 0.49602082 1169 Karp_00623 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 21.615 21.89 2 0.0089118 4303 20181213_JW_Orientia_Karp_3_1 107.32 53.796 6156100 882000 1254600 2339600 591420 267550 0 821030 0 5382 1169 4684 32945;32946;32947;32948;32949;32950 21216 21216 1 LHQILQEFVK Unmodified 1253.7132 0.71320746 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 46.888 47.177 2;3 0.00042669 15011 20181213_JW_Orientia_Karp_3_2 137.05 90.052 138310000 43133000 43183000 15186000 7433900 8336200 8495700 912160 11629000 5383 1380 4685 32951;32952;32953;32954;32955;32956;32957;32958;32959;32960;32961;32962;32963 21217;21218;21219;21220;21221;21222;21223;21224;21225 21225 8 LHQMSVADSGEYVCR Oxidation (M) 1766.7716 0.77160333 195 A0A024RAB6;P98160;Q59EG0;Q5SZI9 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.269 32.627 3 0.0002894 8139 20181213_JW_Orientia_Karp_3_2 143.97 117.61 66049000 15968000 14597000 15804000 3821000 2167800 730970 11755000 1206200 5384 195 4686 32964;32965;32966;32967;32968;32969;32970;32971 21226;21227;21228;21229;21230;21231;21232;21233;21234 21234 151 9 LHQMSVADSGEYVCR Unmodified 1750.7767 0.77668871 195 A0A024RAB6;P98160;Q59EG0;Q5SZI9 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 38.267 38.597 3 0.0014553 11960 20181213_JW_Orientia_Karp_1_3 125.67 97.702 32144000 7606500 0 14497000 1079300 973560 287100 6956500 744130 5385 195 4686 32972;32973;32974;32975;32976;32977;32978 21235;21236;21237;21238 21236 4 LHQNIVLR Unmodified 991.5927 0.59269839 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 29.373 29.682 2 0.0078735 7678 20181213_JW_Orientia_Karp_1_3 110.63 44.56 68600000 20208000 23542000 13640000 5226700 0 1821400 0 4162500 5386 1168 4687 32979;32980;32981;32982;32983;32984 21239;21240;21241 21241 3 LHRPPVIVLQR Unmodified 1326.8248 0.82482359 522 Q05DJ8;B3KRN4;Q92743 HTRA1 Serine protease HTRA1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 35.736 36.058 3 0.00097609 10118 20181213_JW_Orientia_Karp_2_1 130.41 90.258 99304000 29376000 25743000 17956000 5664300 5201600 2018000 13345000 0 5387 522 4688 32985;32986;32987;32988;32989;32990;32991 21242;21243;21244;21245;21246 21245 5 LHSLTQAK Unmodified 896.50797 0.50796571 279 A1A5C4;A7BI36;A1A5C5 RRBP1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 18.269 18.498 2 0.02258 3225 20181213_JW_Orientia_Karp_1_3 86.794 35.458 5809600 1658000 1578500 2058400 202600 0 0 312090 0 5388 279 4689 32992;32993;32994;32995;32996 21247 21247 1 LHTDDELNWLDHGR Unmodified 1719.7965 0.79649617 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 46.14 46.402 3 0.00025935 16222 20181213_JW_Orientia_Karp_1_3 164.22 130.12 102750000 37224000 33489000 22718000 0 0 4890200 0 4431200 5389 2016 4690 32997;32998;32999;33000;33001 21248;21249;21250;21251 21250 4 LHVAILER Unmodified 949.5709 0.57090032 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;E9PMV1 PLEC Plectin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 40.831 41.061 2 0.022511 13526 20181213_JW_Orientia_Karp_1_2 86.833 42.112 20804000 3668600 12627000 3716400 460740 331280 0 0 0 5390 1803 4691 33002;33003;33004;33005;33006 21252 21252 1 LIALDAK Unmodified 742.45889 0.45889025 1121 Karp_00319 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 41.043 41.309 2 0.042828 13625 20181213_JW_Orientia_Karp_1_2 81.784 12.352 27343000 19236000 7372200 0 735330 0 0 0 0 5391 1121 4692 33007;33008;33009 21253 21253 1 LIALLEVLSQK Unmodified 1225.7646 0.76457433 1520;1615;1797 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98;O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.111 73.16 2 4.7387E-18 33736 20181213_JW_Orientia_Karp_1_2 227.99 167.87 296780000 35965000 82281000 65098000 0 15906000 5956600 91572000 0 5392 1615;1520;1797 4693 33010;33011;33012;33013;33014;33015;33016 21254;21255;21256;21257;21258;21259;21260 21255 7 LIALSIDSVEDHLAWSK Unmodified 1895.9993 0.9992783 1644 V9HWC7;P30041;B4DUK1 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 67.132 67.344 3 0.032586 26449 20181213_JW_Orientia_Karp_2_2 51.004 26.589 24050000 0 1481600 4239000 0 8452500 4311500 0 5565600 5393 1644 4694 33017;33018;33019;33020;33021 21261;21262 21261 2 LIAQSTEQVISEEK Unmodified 1573.8199 0.81991695 1062 Karp_00006 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.386 44.73 2 6.8959E-09 15927 20181213_JW_Orientia_Karp_1_1 208.82 108 151720000 53538000 42397000 36735000 4760300 0 6302800 5680900 2305500 5394 1062 4695 33022;33023;33024;33025;33026;33027;33028 21263;21264;21265;21266;21267;21268;21269;21270 21263 8 LICCDILDVLDK Unmodified 1475.7364 0.73638702 1728 V9HW98;P62258;G9K389;G9K388;P62258-2;B4DJB0;B7ZA86;K7EIT4 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.307 72.367 2 4.9709E-05 33221 20181213_JW_Orientia_Karp_1_1 167.12 88.567 114180000 36049000 9988600 0 0 16386000 5086300 46673000 0 5395 1728 4696 33029;33030;33031;33032;33033;33034;33035 21271;21272;21273;21274;21275;21276;21277 21271 7 LICFSDDMDGLR Unmodified 1440.6377 0.63773561 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 61.127 61.397 2 0.0034606 26573 20181213_JW_Orientia_Karp_1_1 114.4 70.631 29886000 9840400 10429000 7180900 0 0 2025800 409470 0 5396 1118 4697 33036;33037;33038;33039;33040 21278;21279;21280 21278 3 LICFSDDMDGLR Oxidation (M) 1456.6327 0.63265023 1118 Karp_00308 yes yes 0 0 1 0 By matching By MS/MS 1 1 54.327 54.426 2 0.012231 21502 20181213_JW_Orientia_Karp_1_3 90.149 55.376 38593000 24961000 0 13632000 0 0 0 0 0 5397 1118 4697 33041;33042 21281 21281 639 1 LICFSDDMDGLRK Oxidation (M) 1584.7276 0.72761325 1118 Karp_00308 yes yes 0 0 1 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 44.496 44.746 3 0.027642 15998 20181213_JW_Orientia_Karp_1_1 55.401 30.223 36992000 14307000 12969000 6221800 1175100 0 2318700 0 0 5398 1118 4698 33043;33044;33045;33046;33047 21282 21282 639 1 LIDESGNMIGITSLSEAISK Oxidation (M) 2093.0562 0.056200835 1377 Karp_02114 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 66.481 66.614 2 4.7846E-48 29363 20181213_JW_Orientia_Karp_1_2 244 157.88 52958000 16141000 11231000 10165000 2653800 7057300 5709900 0 0 5399 1377 4699 33048;33049;33050;33051;33052;33053 21283 21283 971 1 LIDEVIEDTR Unmodified 1201.619 0.6190323 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14;Q9NZM1-5 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 51.574 51.848 2 0.019408 19849 20181213_JW_Orientia_Karp_1_3 96.665 43.338 0 0 0 0 0 0 0 0 0 5400 1991 4700 33054;33055 21284;21285 21285 2 LIDFLESGK Unmodified 1020.5492 0.54916182 1929 Q92841;H3BLZ8;Q59F66;Q92841-1;Q92841-3;Q92841-2;B4DZQ7 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS 1 58.429 58.429 2 0.027971 24681 20181213_JW_Orientia_Karp_1_1 92.051 43.49 0 0 0 0 0 0 0 0 0 5401 1929 4701 33056 21286 21286 1 LIDLDPSVDTLK Unmodified 1327.7235 0.72349737 2043 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 2 1 1 1 1 1 1 77.446 77.434 2 0.014914 36509 20181213_JW_Orientia_Karp_1_1 91.265 1.7044 194050000 89825000 0 19992000 9340400 18599000 19661000 33043000 3591900 + 5402 2043 4702 33057;33058;33059;33060;33061;33062;33063;33064 21287 21287 1 LIDLHSPSEIVK Unmodified 1349.7555 0.7554662 1718 P60866;P60866-2;G3XAN0 RPS20 40S ribosomal protein S20 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 48.632 48.902 3 0.017238 17979 20181213_JW_Orientia_Karp_1_2 102.95 58.412 109670000 35193000 39325000 22000000 7602100 0 5547700 0 0 5403 1718 4703 33065;33066;33067;33068;33069 21288;21289;21290 21289 3 LIEAVDNMLSNK Oxidation (M) 1361.6861 0.68606601 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 1 0 By MS/MS By matching 1 1 44.725 44.9 2 2.5182E-05 16086 20181213_JW_Orientia_Karp_1_1 172.21 119.73 23510000 11610000 11900000 0 0 0 0 0 0 5404 185 4704 33070;33071 21291 21291 141 1 LIEAVDNMLSNK Unmodified 1345.6912 0.69115139 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 0 0 By MS/MS By matching 1 1 56.473 56.573 2 0.0020986 23518 20181213_JW_Orientia_Karp_1_1 132.56 85.367 62499000 41811000 0 20688000 0 0 0 0 0 5405 185 4704 33072;33073 21292 21292 1 LIEEIPESEEISIYR Unmodified 1818.9251 0.92511031 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 62.771 63.021 2 8.1424E-05 27464 20181213_JW_Orientia_Karp_1_1 163.45 100.04 253770000 74473000 48229000 70923000 0 36683000 23344000 120610 0 5406 1376 4705 33074;33075;33076;33077;33078;33079 21293;21294 21293 1 LIENPLR Unmodified 853.50215 0.50215205 1179 Karp_00654 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 42.906 43.236 2 0.028147 14640 20181213_JW_Orientia_Karp_1_2 91.9 10.519 87973000 29652000 37915000 10462000 3080600 0 0 6863600 0 5407 1179 4706 33080;33081;33082;33083;33084 21295;21296 21296 2 LIEVNGQNVEGLR Deamidation (NQ) 1440.7573 0.75725712 990 H3BUQ9;H3BN50;H3BQS0;Q6NTG0;Q15599-3;Q15599-2;Q15599 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes no 0 1 0 0 By matching By MS/MS 1 1 51.778 52.129 2 0.0080811 18738 20181213_JW_Orientia_Karp_2_2 112.94 60.988 3974900 0 0 0 2118800 1856100 0 0 0 5408 990 4707 33085;33086 21297 21297 351 1 LIEYYQQLAQK Unmodified 1395.7398 0.73981614 867 E5RK21;E5RGG1;H9KVE0;Q9UJW0-2;Q9UJW0;Q9UJW0-3 DCTN4 Dynactin subunit 4 yes no 0 0 0 0 By MS/MS By matching 1 1 50.482 50.787 2 0.0039765 19696 20181213_JW_Orientia_Karp_1_1 123.88 76.992 10221000 9673100 0 0 0 0 0 0 547620 5409 867 4708 33087;33088 21298 21298 1 LIFDEAGVNEVMINRPGEVWVEK Oxidation (M) 2659.3316 0.33158783 1062 Karp_00006 yes yes 0 0 1 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 64.656 64.786 3 0.0030941 25217 20181213_JW_Orientia_Karp_2_2 100.01 75.687 157540000 40707000 45536000 30964000 0 28800000 11537000 0 0 5410 1062 4710 33089;33090;33091;33092;33093 21299;21300;21301;21302;21303 21301 581 5 LIFDEAGVNEVMINRPGEVWVEK Unmodified 2643.3367 0.33667321 1062 Karp_00006 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 68.28 68.492 3 0.007818 30820 20181213_JW_Orientia_Karp_1_1 82.367 52.92 100710000 47546000 1342900 0 14736000 19038000 0 0 18052000 5411 1062 4710 33094;33095;33096;33097;33098 21304 21304 1 LIGELAK Unmodified 742.45889 0.45889025 1957 Q99584 S100A13 Protein S100-A13 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 38.177 38.49 2 0.023841 10974 20181213_JW_Orientia_Karp_2_2 97.473 8.8298 45163000 0 7010400 19691000 6250700 12210000 0 0 0 5412 1957 4711 33099;33100;33101;33102 21305 21305 1 LIGEYGLR Unmodified 919.51272 0.51271674 97 B5MCT8;C9JM19;B7Z732;A0A024R4M0;P46781;F2Z3C0;A8MXK4 RPS9 40S ribosomal protein S9 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 45.86 46.093 2 0.01328 16260 20181213_JW_Orientia_Karp_1_2 98.523 42.401 69726000 0 35197000 33817000 0 711930 0 0 0 5413 97 4712 33103;33104;33105;33106 21306;21307 21307 2 LIGNMALLPIR Oxidation (M) 1225.7217 0.72166366 445 B4DM63;B2R4D5;O15145;Q2LE71;C9JZD1;F8VR50 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 59.058 59.351 2 0.0003091 24952 20181213_JW_Orientia_Karp_1_2 146.81 81.772 157120000 29984000 25807000 40606000 13570000 17919000 29087000 148130 0 5414 445 4713 33107;33108;33109;33110;33111;33112;33113;33114 21308;21309;21310;21311;21312;21313;21314 21309 294 7 LIGNMALLPIR Unmodified 1209.7267 0.72674903 445 B4DM63;B2R4D5;O15145;Q2LE71;C9JZD1;F8VR50 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.021 67.198 2 3.4364E-18 29510 20181213_JW_Orientia_Karp_1_3 230.09 139.72 46480000 13033000 4975900 18351000 0 6799200 2987100 0 333980 5415 445 4713 33115;33116;33117;33118;33119;33120;33121 21315;21316;21317;21318;21319;21320;21321;21322;21323 21318 9 LIGPNCPGIITPEQCK Unmodified 1795.8961 0.89607556 1120 Karp_00318 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.116 53.461 2 2.5725E-14 18865 20181213_JW_Orientia_Karp_3_1 209.25 156.46 322270000 47657000 88361000 68775000 22092000 20190000 16864000 56860000 1476500 5416 1120 4714 33122;33123;33124;33125;33126;33127;33128;33129 21324;21325;21326;21327;21328;21329 21328 6 LIGQIVSSITASLR Unmodified 1456.8613 0.86132826 1887 Q71U36-2;Q71U36;Q1ZYQ1;Q13748;B4DQK4;Q9UQM3;Q13748-2;Q6PEY2;F8VQQ4 TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 71.537 71.637 2 0.007148 32736 20181213_JW_Orientia_Karp_1_2 124.47 83.973 18650000 6979800 6457700 1887600 0 0 0 3325200 0 5417 1887 4715 33130;33131;33132;33133 21330 21330 1 LIHEQEQQSSS Unmodified 1284.5946 0.59460847 1937 Q96FQ6 S100A16 Protein S100-A16 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 21.676 22.042 2 0.0023171 4551 20181213_JW_Orientia_Karp_1_2 116.52 80.184 46447000 8581100 11546000 0 5026400 3949000 4487600 9031700 3824600 5418 1937 4716 33134;33135;33136;33137;33138;33139;33140 21331;21332;21333;21334 21332 4 LIINSLYK Unmodified 962.58007 0.58006802 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;Q96GW1;B4DQX3;F8W026 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.99 51.335 2 0.012712 19675 20181213_JW_Orientia_Karp_1_2 99.442 48.476 113910000 25693000 26046000 32008000 10465000 5829800 6886900 6494300 486580 5419 1598 4717 33141;33142;33143;33144;33145;33146;33147;33148 21335;21336;21337 21336 3 LIISGEK Unmodified 758.4538 0.45380487 1349 Karp_01525 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 33.037 33.437 2 0.036436 9212 20181213_JW_Orientia_Karp_3_1 85.359 0 339330000 0 154660000 153800000 9979000 0 4697000 16197000 0 5420 1349 4718 33149;33150;33151;33152;33153 21338;21339 21339 2 LIIVGYSAYSR Unmodified 1240.6816 0.68157298 1140 Karp_00452 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 54.846 55.029 2 0.0056887 22558 20181213_JW_Orientia_Karp_1_1 103.26 56.068 16681000 3677200 7855100 5148500 0 0 0 0 0 5421 1140 4719 33154;33155;33156 21340;21341 21340 2 LIKPPVLPLTEQGEYNNAK Unmodified 2123.1627 0.16265524 1061 Karp_00005 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.065 54.423 3 0.00016497 19865 20181213_JW_Orientia_Karp_2_2 131.18 98.266 641360000 99809000 176160000 153470000 48819000 70926000 52692000 180380 39301000 5422 1061 4720 33157;33158;33159;33160;33161;33162;33163;33164 21342;21343;21344;21345;21346;21347;21348 21346 7 LIKPPVLPLTEQGEYNNAK Deamidation (NQ) 2124.1467 0.14667082 1061 Karp_00005 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 1 1 2 56.369 56.706 3 1.3665E-05 21667 20181213_JW_Orientia_Karp_2_1 148.41 114.64 549700000 105550000 119920000 98143000 48725000 34666000 33203000 82927000 26565000 5423 1061 4720 33165;33166;33167;33168;33169;33170;33171;33172;33173;33174;33175;33176;33177;33178 21349;21350;21351;21352;21353;21354;21355;21356;21357;21358;21359;21360 21356 392;393;1787 11 LIKPPVLPLTEQGEYNNAK 2 Deamidation (NQ) 2125.1307 0.13068641 1061 Karp_00005 yes yes 0 2 0 1 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 59.515 59.775 3 0.00022357 25562 20181213_JW_Orientia_Karp_1_1 127.2 77.976 52025000 24473000 6373000 0 3689200 9229300 8261000 0 0 5424 1061 4720 33179;33180;33181;33182;33183 21361;21362;21363 21361 392;393;1787 2 LILADALCYAHTFNPK Unmodified 1845.9447 0.94474031 1639 V9HW38;P28838-2;P28838;B4DQG5 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 63.835 64.024 3 0.026455 24205 20181213_JW_Orientia_Karp_3_2 56.482 23.181 11641000 6181400 1968100 2274800 0 0 0 0 1217100 5425 1639 4721 33184;33185;33186;33187 21364 21364 1 LILEQIR Unmodified 883.5491 0.54910224 1268 Karp_01076 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 48.705 48.965 2 0.011643 15983 20181213_JW_Orientia_Karp_3_2 120.49 15.288 396740000 179280000 88706000 89998000 0 10598000 24169000 0 3980400 5426 1268 4722 33188;33189;33190;33191;33192;33193 21365;21366;21367 21367 3 LILEQMQK Unmodified 1001.558 0.55795237 377 V9HW72;A8K690;P31948;P31948-2;P31948-3;H0YGI8 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 44.134 44.401 2 0.0052141 15296 20181213_JW_Orientia_Karp_1_3 119.41 29.504 45400000 12890000 19663000 9465300 0 2550900 336470 494620 0 5427 377 4723 33194;33195;33196;33197;33198;33199;33200 21368;21369;21370;21371 21369 4 LILGELLPDGDSISFDVVNK Unmodified 2143.1413 0.14125109 1169 Karp_00623 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 75.414 75.439 2 0.00020832 28245 20181213_JW_Orientia_Karp_3_1 122.1 60.673 33256000 9232900 4191400 8450600 0 0 0 11381000 0 5428 1169 4724 33201;33202;33203;33204 21372;21373 21373 2 LILHPNDESHEPIEYILPK Unmodified 2256.179 0.17903358 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 1 2 1 56.166 56.513 3;4 0.009307 22658 20181213_JW_Orientia_Karp_1_3 78.078 46.845 606640000 115590000 148110000 115690000 99729000 63629000 53168000 7620100 3102600 5429 1169 4725 33205;33206;33207;33208;33209;33210;33211;33212;33213;33214;33215;33216;33217;33218 21374;21375;21376;21377;21378;21379 21376 6 LILHPNDESHEPIEYILPK Deamidation (NQ) 2257.163 0.16304917 1169 Karp_00623 yes yes 0 1 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 2 1 2 60.851 61.171 3;4 0.011069 23724 20181213_JW_Orientia_Karp_2_3 71.286 46.1 79619000 21250000 14750000 14422000 3568000 8870700 11945000 993790 3819600 5430 1169 4725 33219;33220;33221;33222;33223;33224;33225;33226;33227;33228;33229 21380;21381;21382 21382 565 3 LILLGEQAYSITGAELR Unmodified 1846.02 0.020013746 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 2 2 2 2 70.002 70.146 2;3 0.00025641 25227 20181213_JW_Orientia_Karp_3_1 123.76 86.203 139170000 33481000 0 35576000 8034900 19728000 5708100 31229000 5410800 5431 1395 4726 33230;33231;33232;33233;33234;33235;33236;33237;33238;33239;33240;33241;33242;33243 21383;21384;21385;21386;21387;21388;21389;21390;21391;21392 21392 8 LILSTDTLEELK Unmodified 1373.7654 0.76536219 1850 Q5TAQ0;V5IRT4;Q9BRT2 UQCC2 Ubiquinol-cytochrome-c reductase complex assembly factor 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 63.592 63.822 2 0.00013074 25250 20181213_JW_Orientia_Karp_2_1 162.36 78.575 40287000 11484000 0 9632500 1306500 10329000 4653800 113360 2768800 5432 1850 4727 33244;33245;33246;33247;33248;33249;33250 21393;21394;21395;21396;21397;21398 21395 6 LINAGYTLAR Unmodified 1090.6135 0.61349341 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 45.293 45.543 2 5.7687E-05 15988 20181213_JW_Orientia_Karp_1_2 153.97 80.722 258720000 93531000 83765000 66979000 0 7144600 5840400 1458100 0 5433 1458 4729 33251;33252;33253;33254;33255;33256;33257 21399;21400;21401;21402;21403;21404 21400 6 LINFDPNTVHILMFR Unmodified 1828.9658 0.96581011 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.719 71.797 3 0.0087738 32773 20181213_JW_Orientia_Karp_1_2 81.992 36.128 486410000 110110000 64585000 113990000 866740 44090000 29870000 122900000 0 5434 1126 4730 33258;33259;33260;33261;33262;33263;33264 21405;21406;21407;21408;21409;21410 21406 6 LINFDPNTVHILMFR Oxidation (M) 1844.9607 0.96072473 1126 Karp_00329 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 67.449 67.681 3 0.013048 30398 20181213_JW_Orientia_Karp_1_1 105.58 58.05 153180000 0 0 25272000 0 73097000 32389000 892910 21530000 5435 1126 4730 33265;33266;33267;33268;33269;33270 21411;21412;21413;21414;21415 21411 658 5 LINQPLPDLK Unmodified 1149.6758 0.67575932 82 A0A024R407;A0A024R3Z1;P11137-3;P11137;A8K5Y1;A0A024R409;Q59FX9;A0A024R3Y8;P11137-2;P11137-4 MAP2 Microtubule-associated protein;Microtubule-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 51.889 52.139 2 6.1028E-05 18629 20181213_JW_Orientia_Karp_2_1 153.24 86.445 63526000 12551000 8857200 16163000 11108000 5882700 8963600 0 0 5436 82 4731 33271;33272;33273;33274;33275;33276 21416;21417;21418;21419 21419 4 LIPTAEVPLTNIFANTTLLEEK Unmodified 2426.3308 0.33084278 1364 Karp_01859 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 75.35 75.353 2;3 0.0005528 30796 20181213_JW_Orientia_Karp_2_3 102.45 67.28 562880000 138210000 133420000 146900000 619860 47506000 30891000 65334000 0 5437 1364 4732 33277;33278;33279;33280;33281;33282;33283;33284;33285;33286;33287;33288;33289 21420;21421;21422;21423;21424;21425;21426 21425 7 LIQDFISK Unmodified 962.54368 0.54368251 1112 Karp_00294 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 50.566 50.867 2 0.016331 19227 20181213_JW_Orientia_Karp_1_3 93.598 31.49 112000000 16955000 39529000 16174000 21343000 6456000 11390000 0 153180 5438 1112 4733 33290;33291;33292;33293;33294;33295;33296 21427;21428 21428 2 LIQEQHPEEELIK Unmodified 1604.841 0.84098675 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.68 40.99 3 0.03848 13302 20181213_JW_Orientia_Karp_1_3 48.659 18.926 128340000 75226000 20135000 16516000 0 3673700 0 10208000 2578000 5439 316 4734 33297;33298;33299;33300;33301;33302 21429 21429 1 LIQNLDANHDGR Unmodified 1364.6797 0.6796755 1937 Q96FQ6 S100A16 Protein S100-A16 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 30.912 31.35 3 0.010452 8040 20181213_JW_Orientia_Karp_2_3 80.737 36.173 73170000 0 21441000 15899000 15132000 8834000 2681000 2418500 6764600 5440 1937 4735 33303;33304;33305;33306;33307;33308;33309 21430;21431;21432;21433;21434 21433 5 LIQNNHYAMEDVATR Oxidation (M) 1789.8417 0.8417318 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 32.253 32.436 3 0.023307 9527 20181213_JW_Orientia_Karp_1_1 77.24 44.506 29900000 9965800 12373000 7561500 0 0 0 0 0 5441 316 4736 33310;33311;33312 21435;21436 21435 218 2 LIQNNHYAMEDVATR Unmodified 1773.8468 0.84681718 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 38.597 38.83 3 0.0077044 12163 20181213_JW_Orientia_Karp_1_3 90.367 61.554 13732000 0 9842400 3428800 0 460940 0 0 0 5442 316 4736 33313;33314;33315 21437 21437 1 LIQSHPESAEDLQEK Unmodified 1722.8424 0.84244331 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 32.493 32.843 3 0.0071243 9684 20181213_JW_Orientia_Karp_1_1 107.82 73.14 57421000 11002000 12665000 17022000 6125800 0 0 10605000 0 5443 316 4737 33316;33317;33318;33319;33320 21438;21439;21440 21438 3 LISEILSESVVPDVR Unmodified 1654.9142 0.91415169 51 K7EMQ8;J3QKS7;B4DGM3;A0A024R1S7;Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4;Q969G3 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 70.085 70.244 2 0.0006925 31975 20181213_JW_Orientia_Karp_1_1 137.4 81.383 38316000 9448700 3861700 7870200 2057400 3362200 0 9552800 2162500 5444 51 4738 33321;33322;33323;33324;33325;33326;33327 21441;21442;21443;21444 21441 4 LISLLNEK Unmodified 928.55933 0.55933258 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;Q9NZM1-5;Q9NZM1-7;Q9NZM1-4;Q9NZM1-8 MYOF Myoferlin yes no 0 0 0 0 By MS/MS 1 50.174 50.524 2 0.035194 19022 20181213_JW_Orientia_Karp_1_2 79.713 18.741 66403000 0 66403000 0 0 0 0 0 0 5445 1991 4739 33328 21445 21445 1 LISLTDENALSGNEELTVK Unmodified 2045.0528 0.052830017 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;Q96GW1;B4DQX3 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By matching 1 1 62.598 62.853 2 5.8688E-07 27385 20181213_JW_Orientia_Karp_1_1 154.81 114.04 10906000 10025000 0 0 0 0 0 0 881690 5446 1598 4740 33329;33330 21446 21446 1 LISSYPEITR Unmodified 1177.6343 0.63428844 1428 Karp_02381 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 47.045 47.365 2 0.00013189 15967 20181213_JW_Orientia_Karp_2_2 135.55 65.281 622770000 166730000 180850000 90084000 51904000 31000000 44401000 728170 57069000 5447 1428 4741 33331;33332;33333;33334;33335;33336;33337;33338 21447;21448;21449 21448 3 LISWYDNEFGYSNR Unmodified 1762.7951 0.79509919 1551 V9HVZ4;Q2TSD0;P04406-2;P04406;E7EUT5 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 63.237 63.506 2 0.00011182 23947 20181213_JW_Orientia_Karp_3_2 176.87 114.24 140200000 37595000 24890000 29131000 5412200 18129000 14834000 0 10211000 5448 1551 4742 33339;33340;33341;33342;33343;33344;33345;33346 21450;21451;21452;21453;21454;21455 21455 5 LITCTATPICLIHGR Unmodified 1724.9066 0.90658067 1197 Karp_00816 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.879 52.129 3 0.010406 20298 20181213_JW_Orientia_Karp_1_2 78.486 46.418 61374000 10510000 13371000 15031000 12822000 4044600 5595100 0 0 5449 1197 4743 33347;33348;33349;33350;33351;33352 21456;21457 21456 2 LITIFGGSENR Unmodified 1205.6404 0.64043645 1072 Karp_00045 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 55.259 55.708 2 0.0002428 22563 20181213_JW_Orientia_Karp_1_2 153.1 89.683 28437000 0 22510000 0 5926700 0 0 0 0 5450 1072 4744 33353;33354;33355;33356 21458;21459;21460 21459 3 LITLEEEMTK Unmodified 1205.6213 0.62134049 171 B4DNL5;A0A024R8S5;P07237;F5H8J2;B4DLN6;H7BZ94;B4DUA5;I3L398;Q96C96;H0Y3Z3 P4HB Protein disulfide-isomerase yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 51.179 51.429 2 0.0010685 19720 20181213_JW_Orientia_Karp_1_2 122.94 83.791 114380000 25321000 25028000 32765000 13888000 7079300 10303000 0 0 5451 171 4745 33357;33358;33359;33360;33361;33362 21461;21462 21461 2 LITLEEEMTK Oxidation (M) 1221.6163 0.61625511 171 B4DNL5;A0A024R8S5;P07237;F5H8J2;B4DLN6;H7BZ94;B4DUA5;I3L398;Q96C96;H0Y3Z3 P4HB Protein disulfide-isomerase yes no 0 0 1 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 42.931 43.291 2 1.2603E-06 13980 20181213_JW_Orientia_Karp_3_1 182.65 133.85 112870000 32094000 31197000 20127000 12354000 0 0 14262000 2833300 5452 171 4745 33363;33364;33365;33366;33367;33368 21463 21463 135 1 LITPAVVSER Unmodified 1083.6288 0.62880913 1737 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 46.809 47.129 2 0.01789 15000 20181213_JW_Orientia_Karp_3_2 85.355 46.604 636550000 194080000 181780000 112840000 58338000 16936000 38483000 1422300 32667000 5453 1737 4746 33369;33370;33371;33372;33373;33374;33375;33376 21464;21465;21466;21467 21467 4 LITPLTETVF Unmodified 1132.638 0.63797683 1364 Karp_01859 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 75.712 75.712 2 7.8881E-07 35107 20181213_JW_Orientia_Karp_1_3 188.81 170.04 162220000 58006000 27246000 49978000 0 6121600 5606400 15265000 0 5454 1364 4747 33377;33378;33379;33380;33381;33382 21468;21469;21470;21471;21472;21473 21470 6 LITQTFSHHNQLAQK Unmodified 1764.9271 0.92711641 2008 Q9Y266;Q9H2R7 NUDC;NPD011 Nuclear migration protein nudC yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 30.601 30.935 3 0.0030986 8401 20181213_JW_Orientia_Karp_1_3 99.669 67.393 53309000 26794000 0 16979000 2167900 1729000 487850 5151000 0 5455 2008 4748 33383;33384;33385;33386;33387;33388 21474 21474 1 LITVEDAR Unmodified 915.50255 0.50254598 1062 Karp_00006 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.777 38.027 2 0.0041745 10802 20181213_JW_Orientia_Karp_2_2 143.89 39.678 87529000 44106000 0 25391000 0 8578500 0 9453100 0 5456 1062 4749 33389;33390;33391;33392;33393;33394;33395 21475;21476;21477;21478;21479;21480;21481 21479 7 LIVAYVDDLDR Unmodified 1290.682 0.68196691 1493 O14776-2;O14776 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 60.203 60.533 2 0.0013868 23389 20181213_JW_Orientia_Karp_2_1 123.75 75.925 48566000 10948000 13549000 8727900 5521500 0 5000600 3830700 987980 5457 1493 4750 33396;33397;33398;33399;33400;33401;33402 21482;21483;21484;21485;21486;21487;21488 21485 7 LIVDEAINEDNSVVSLSQPK Unmodified 2169.1165 0.11649291 1708 V9HW80;P55072 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 63.867 64.046 2;3 4.9786E-22 28068 20181213_JW_Orientia_Karp_1_1 206.13 142.66 126980000 44525000 28497000 35398000 0 4404500 10733000 0 3417800 5458 1708 4751 33403;33404;33405;33406;33407;33408;33409;33410;33411;33412;33413 21489;21490;21491;21492;21493 21489 5 LIVDEAINEDNSVVSLSQPK Deamidation (NQ) 2170.1005 0.10050849 1708 V9HW80;P55072 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 1 0 0 By matching By matching By matching By MS/MS 1 1 1 1 65.273 65.448 2 0.00041595 22787 20181213_JW_Orientia_Karp_3_1 120.59 86.586 22358000 6851500 0 9225200 0 0 2097000 4184700 0 5459 1708 4751 33414;33415;33416;33417 21494 21494 1128 1 LIVENEDIK Unmodified 1071.5812 0.58119023 1182 Karp_00659 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 41.77 42.032 2 0.012602 14459 20181213_JW_Orientia_Karp_1_1 88.948 28.358 42064000 17984000 13829000 9229300 0 0 641370 0 379640 5460 1182 4752 33418;33419;33420;33421;33422 21495;21496;21497 21495 3 LIVIASSTPQTIEALMK Oxidation (M) 1830.0172 0.017236554 1243 Karp_00910 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 1 62.843 63.064 2;3 4.5053E-09 27559 20181213_JW_Orientia_Karp_1_1 175.27 131.96 112120000 41235000 14345000 20241000 1819700 18596000 12533000 0 3354900 5461 1243 4753 33423;33424;33425;33426;33427;33428;33429;33430;33431;33432 21498;21499;21500;21501;21502;21503 21498 804 6 LIVIASSTPQTIEALMK Unmodified 1814.0223 0.022321932 1243 Karp_00910 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.38 71.469 2 8.6565E-07 32266 20181213_JW_Orientia_Karp_1_3 193.28 155.04 331170000 81539000 122680000 49470000 11638000 16687000 13535000 35624000 0 5462 1243 4753 33433;33434;33435;33436;33437;33438;33439 21504;21505;21506;21507;21508;21509;21510 21506 7 LIVVDDFNIGSNK Unmodified 1432.7562 0.75619449 1241 Karp_00908 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 62.589 62.806 2 2.8399E-07 27101 20181213_JW_Orientia_Karp_1_2 185.3 124.9 85887000 20226000 18498000 29061000 1866300 9623100 6612700 0 0 5463 1241 4754 33440;33441;33442;33443;33444;33445;33446;33447 21511;21512;21513;21514;21515;21516;21517;21518 21512 8 LIYALALQK Unmodified 1031.6379 0.63791725 1281 Karp_01117 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 55.455 55.771 2 0.0002427 22635 20181213_JW_Orientia_Karp_1_2 178.65 113.39 281980000 123980000 51173000 66281000 7246900 13634000 19554000 0 115250 5464 1281 4755 33448;33449;33450;33451;33452;33453;33454 21519;21520;21521;21522;21523 21520 5 LKDDIEQHFSK Unmodified 1358.683 0.68302954 1396 Karp_02152 yes yes 0 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 29.672 30.022 3 0.0012926 7436 20181213_JW_Orientia_Karp_3_1 152.96 83.742 99944000 13587000 26254000 25643000 12825000 13308000 0 8326500 0 5465 1396 4756 33455;33456;33457;33458;33459;33460 21524;21525;21526 21526 3 LKEDVSQYSDAYQYER Unmodified 1992.9065 0.90650013 1327 Karp_01361 yes yes 0 0 0 1 By MS/MS 1 41.375 41.725 3 0.028963 13891 20181213_JW_Orientia_Karp_1_2 84.62 59.03 0 0 0 0 0 0 0 0 0 5466 1327 4757 33461 21527 21527 1 LKEQDIINL Unmodified 1084.6128 0.61282471 1456 Karp_02593 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.685 55.001 2 0.017694 20165 20181213_JW_Orientia_Karp_2_2 148.52 15.956 110390000 14213000 21315000 24338000 10851000 14866000 24693000 0 110630 5467 1456 4758 33462;33463;33464;33465;33466;33467;33468 21528;21529;21530 21529 3 LKGDDLQAIK Unmodified 1099.6237 0.62372375 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;D3DPI2;Q6PKD2;P07910-3;O60812;B7ZW38;B2RXH8;G3V5V7;B4DQQ2;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;G3V2D6 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 0 0 0 1 By MS/MS By matching 1 1 32.256 32.707 3 0.0039394 8175 20181213_JW_Orientia_Karp_2_2 110.53 6.0996 2150700 0 0 0 0 673750 0 1476900 0 5468 400;452 4759 33469;33470 21531 21531 1 LKGEIDASVPELEGDLR Unmodified 1839.9578 0.95780742 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 53.768 54.088 3 0.026646 19692 20181213_JW_Orientia_Karp_2_2 101.04 67.268 88536000 0 27296000 13140000 14863000 11333000 21905000 0 0 5469 1782 4760 33471;33472;33473;33474;33475 21532 21532 1 LKHLVDEPQNLIK Unmodified 1545.8879 0.88787736 792 CON__P02769 yes yes 0 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 38.983 39.29 3 0.0005571 11910 20181213_JW_Orientia_Karp_2_1 190.35 146.55 116270000 16403000 13686000 14757000 30335000 10222000 8251800 22614000 0 + 5470 792 4761 33476;33477;33478;33479;33480;33481;33482 21533;21534;21535;21536 21534 4 LKLEDFFAR Unmodified 1137.6182 0.61824444 391 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;P11413-3;P11413-2;Q0PHS1;E7EM57;E7EUI8;B4DYA7;E9PD92;Q0PHS5;A7IZZ3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 1 By MS/MS By matching 1 1 57.887 58.112 3 0.03866 23896 20181213_JW_Orientia_Karp_1_3 73.841 27.135 7451800 0 0 6103700 0 0 1348100 0 0 5471 391 4762 33483;33484 21537 21537 1 LKLEPHEGLLLR Unmodified 1416.8453 0.84528426 687 B4E2Z3;F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 1 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 43.605 43.945 3 0.027773 14619 20181213_JW_Orientia_Karp_2_3 81.92 55.133 16921000 6428900 4450900 0 1431800 0 2097300 2512400 0 5472 687 4763 33485;33486;33487;33488;33489 21538;21539 21539 2 LKPDPNTLCDEFK Unmodified 1575.7603 0.76029359 792 CON__P02769 yes yes 0 0 0 1 By matching By MS/MS By MS/MS 1 1 1 46.356 46.706 3 0.031838 15509 20181213_JW_Orientia_Karp_2_2 91.093 63.124 78698000 0 0 0 2480200 0 76217000 0 0 + 5473 792 4764 33490;33491;33492 21540;21541 21540 2 LKPEDITQIQPQQLVLR Unmodified 2018.1524 0.1524249 1559 P05556;P05556-2;P05556-5;P05556-4;P05556-3;C9JPK5;E7ERX5;Q5T3E6;E9PLR6;E7EUI6;E7EQW5 ITGB1 Integrin beta-1;Integrin beta yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 61.184 61.504 3 1.7602E-11 26356 20181213_JW_Orientia_Karp_1_2 180.27 129.01 192970000 56719000 26137000 55800000 6290800 25130000 16407000 215820 6268900 5474 1559 4765 33493;33494;33495;33496;33497;33498;33499;33500 21542;21543;21544;21545;21546;21547 21544 6 LKPGAPLRPK Unmodified 1075.6866 0.68659878 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 2 By matching By MS/MS 1 1 22.457 22.682 3 0.0080809 4697 20181213_JW_Orientia_Karp_1_3 114.89 101.2 9302200 0 1047500 8254700 0 0 0 0 0 5475 1615 4766 33501;33502 21548 21548 1 LKPLEVELR Unmodified 1095.6652 0.66519463 137 A0A024R6I3;Q53GF9;P49755;B4DZH3 TMED10 Transmembrane emp24 domain-containing protein 10 yes no 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 43.655 43.843 3 0.034569 13991 20181213_JW_Orientia_Karp_2_2 76.228 49.786 15966000 6133900 7749600 0 0 1544700 537520 0 0 5476 137 4767 33503;33504;33505;33506 21549 21549 1 LKPNLGNGADLPNYR Deamidation (NQ) 1641.8475 0.84746911 2008 Q9Y266;Q9H2R7 NUDC;NPD011 Nuclear migration protein nudC yes no 0 1 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 46.215 46.405 3 0.02244 16847 20181213_JW_Orientia_Karp_1_1 92.269 60.674 46609000 10808000 24165000 6108800 0 1248400 4278000 0 0 5477 2008 4768 33507;33508;33509;33510;33511 21550;21551 21550 1238 2 LKQKNQQLK 2 Deamidation (NQ) 1128.6503 0.65027285 1941 Q96HR3-2;Q96HR3 MED30 Mediator of RNA polymerase II transcription subunit 30 yes no 0 2 0 2 By MS/MS 1 36.687 37.237 2 0.028812 10764 20181213_JW_Orientia_Karp_2_1 111.65 29.408 0 0 0 0 0 0 0 0 0 5478 1941 4769 33512 21552 21552 1206;2064 1 LKSEVNEMENNLTRR Oxidation (M);3 Deamidation (NQ) 1850.868 0.86800613 581 B4DIR9;Q9NYJ8 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 yes no 0 3 1 2 By matching By matching By MS/MS 1 1 1 54.207 54.659 2 0.030728 19043 20181213_JW_Orientia_Karp_3_2 59.265 11.261 28918000 0 0 18299000 9066500 0 0 0 1552700 5479 581 4770 33513;33514;33515 21553 21553 203;204;205 1 LKSHFQAQLQQEMR Oxidation (M);3 Deamidation (NQ) 1761.8356 0.83558379 296 B3KS56;B2RDB1;A4D0Z4;Q96CN9 GCC1 GRIP and coiled-coil domain-containing protein 1 yes no 0 3 1 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 56.393 56.66 2 0.015493 23278 20181213_JW_Orientia_Karp_1_2 76.143 14.789 965980000 197510000 226890000 160130000 182780000 111740000 86926000 0 0 5480 296 4771 33516;33517;33518;33519;33520;33521 21554 21554 1358;1359;1360;1361 210 0 LKYENEVALR Unmodified 1233.6717 0.67173657 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 2 3 3 4 3 2 34.766 35.155 2;3 0.0013108 10498 20181213_JW_Orientia_Karp_3_1 119.34 52.002 1053200000 289840000 313010000 126030000 79855000 65475000 1136000 122950000 54948000 + 5481 798 4772 33522;33523;33524;33525;33526;33527;33528;33529;33530;33531;33532;33533;33534;33535;33536;33537;33538;33539;33540;33541;33542 21555;21556;21557;21558;21559;21560;21561;21562;21563;21564;21565 21565 11 LKYENEVALR Deamidation (NQ) 1234.6558 0.65575216 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 38.854 39.171 3 0.00064682 11870 20181213_JW_Orientia_Karp_2_1 138.76 76.299 81299000 27229000 15744000 18408000 3028300 13037000 0 3853800 0 + 5482 798 4772 33543;33544;33545;33546;33547;33548;33549 21566;21567;21568;21569 21567 279 4 LLAALLEDEGGSGRPLLQAAK Unmodified 2121.1794 0.17936793 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 59.858 60.108 3 1.717E-05 25398 20181213_JW_Orientia_Karp_1_2 140.93 101.27 58424000 21367000 17617000 11078000 1386200 3586500 3388700 0 0 5483 2016 4773 33550;33551;33552;33553;33554;33555 21570;21571;21572;21573 21571 4 LLACIASR Unmodified 902.50077 0.50077184 1726 Q5JR95;Q5JR94;P62241;Q9BS10 RPS8 40S ribosomal protein S8 yes no 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 40.766 41.076 2 0.01328 12877 20181213_JW_Orientia_Karp_3_1 98.523 43.998 24195000 7404500 8509700 5044500 0 379130 0 2712300 144900 5484 1726 4774 33556;33557;33558;33559;33560;33561 21574;21575 21575 2 LLADPTGAFGK Unmodified 1088.5866 0.58660996 1645 V9HW35;P30044-2;P30044;P30044-3;P30044-4 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 52.384 52.705 2 0.010269 18400 20181213_JW_Orientia_Karp_3_1 95.502 39.826 174910000 51747000 0 0 47852000 27042000 47793000 471740 0 5485 1645 4775 33562;33563;33564;33565;33566 21576;21577;21578;21579;21580 21580 5 LLAEILSIHK Unmodified 1135.6965 0.69649476 1089 Karp_00229 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 1 1 1 2 1 53.895 54.207 2;3 0.02071 21628 20181213_JW_Orientia_Karp_1_2 83.647 42.145 21131000 3289900 7931000 2007900 1579300 1380500 4896700 0 45524 5486 1089 4776 33567;33568;33569;33570;33571;33572;33573;33574;33575 21581;21582 21582 2 LLAEITSAGFTK Unmodified 1249.6918 0.69180331 1307 Karp_01248 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 55.749 56.184 2 1.347E-07 22496 20181213_JW_Orientia_Karp_1_3 189.58 137.42 50037000 0 15257000 17341000 2277700 0 6762500 8155200 244170 5487 1307 4777 33576;33577;33578;33579;33580;33581;33582;33583 21583;21584;21585;21586;21587;21588;21589 21585 7 LLAELPASVHALTGVDLSK Unmodified 1933.0884 0.088427662 11 Q6FG43;J3QLD9;A0A024QZ62;E7EMK3;Q14254 FLOT2;hCG_1998851 Flotillin-2 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 64.688 64.926 3 0.032149 28789 20181213_JW_Orientia_Karp_1_1 48.547 26.156 15381000 10224000 0 0 403190 3716300 0 1037000 0 5488 11 4778 33584;33585;33586;33587 21590 21590 1 LLAEPVPGIK Unmodified 1035.6328 0.63283187 938 F8VZ29;F8VSD4;V9HW41;F8VV71;P61088;Q5JXB2 UBE2N;HEL-S-71;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 50.929 51.237 2 0.011245 17449 20181213_JW_Orientia_Karp_3_1 91.069 51.526 119970000 21438000 33902000 11155000 24965000 9593600 15381000 3531100 0 5489 938 4779 33588;33589;33590;33591;33592;33593;33594 21591;21592;21593;21594 21594 4 LLANILSELQK Unmodified 1240.7391 0.73908786 1292 Karp_01179 yes yes 0 0 0 0 By matching By MS/MS 1 1 66.406 66.531 2 0.00085335 29296 20181213_JW_Orientia_Karp_1_2 131.52 70.688 7420900 3689500 3731300 0 0 0 0 0 0 5490 1292 4780 33595;33596 21595 21595 1 LLAQTTLR Unmodified 914.55492 0.5549159 160 B4E2V5;B4DZK8;A0A024R882;P27105 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.465 38.767 2 0.0042154 11792 20181213_JW_Orientia_Karp_3_1 136.27 31.068 436340000 219020000 100510000 59698000 0 14564000 5069500 33704000 3779100 5491 160 4781 33597;33598;33599;33600;33601;33602;33603 21596;21597;21598;21599;21600;21601 21600 6 LLASANLEEVTMK Unmodified 1417.7487 0.74866627 1655 P35659;B4DFG0;B4DNW3;P35659-2;H0Y993 DEK Protein DEK yes no 0 0 0 0 By MS/MS By matching 1 1 54.856 55.031 2 0.0012462 22529 20181213_JW_Orientia_Karp_1_1 134.98 91.669 7745600 3387000 4358600 0 0 0 0 0 0 5492 1655 4782 33604;33605 21602 21602 1 LLATQTAAELSK Unmodified 1244.6976 0.69761697 1711 Q96DP0;P56181-2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 43.358 43.702 2 1.2052E-05 14187 20181213_JW_Orientia_Karp_3_1 213.35 154.75 74510000 14826000 17911000 9756300 10906000 0 3959400 14898000 2253100 5493 1711 4783 33606;33607;33608;33609;33610;33611;33612 21603;21604;21605 21604 3 LLAVAATAPPDAPNR Unmodified 1475.8096 0.80962704 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.989 49.29 2 4.8513E-06 16167 20181213_JW_Orientia_Karp_3_2 169.65 112.31 65951000 11762000 15596000 6679700 11838000 5091800 8071400 0 6911800 5494 19 4784 33613;33614;33615;33616;33617;33618;33619 21606;21607;21608;21609;21610;21611 21611 6 LLAVAATAPPDAPNREEVFDER Unmodified 2380.2023 0.20228822 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.715 54.031 3 0.0059053 21401 20181213_JW_Orientia_Karp_1_2 89.913 60.021 367610000 157620000 50159000 107910000 15783000 18502000 16335000 0 1301200 5495 19 4785 33620;33621;33622;33623;33624;33625;33626 21612;21613;21614;21615 21614 4 LLCGLLAER Unmodified 1043.5798 0.57975045 1021 I4AY87;P14174 MIF Macrophage migration inhibitory factor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.222 54.557 2 0.0013008 19974 20181213_JW_Orientia_Karp_2_1 127.46 67.168 175860000 56922000 42849000 0 18729000 28702000 23205000 0 5455500 5496 1021 4786 33627;33628;33629;33630;33631;33632;33633 21616;21617;21618;21619;21620;21621 21619 6 LLCQCLGFGSGHFR Unmodified 1650.7759 0.77590085 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;B4DU16;B4DTK1;Q6PJE5;B4DN21;B4DTH2;Q9H382;Q7L553 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 48.734 49.023 3 0.00056001 17930 20181213_JW_Orientia_Karp_1_3 130.15 91.367 224290000 49349000 84339000 44876000 0 0 0 0 45722000 5497 85 4787 33634;33635;33636;33637 21622;21623 21623 2 LLDAPLHEFLPTTFTTAYNR Unmodified 2319.1899 0.18993262 1311 Karp_01258 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 70.933 71.065 3 0.023947 32048 20181213_JW_Orientia_Karp_1_3 81.643 57.633 5873400 0 0 3221700 914460 1737200 0 0 0 5498 1311 4788 33638;33639;33640 21624 21624 1 LLDAQLSTGGIVDPSK Unmodified 1612.8672 0.8672015 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 58.818 59.089 2 0.00046181 24437 20181213_JW_Orientia_Karp_1_3 136.33 83.541 49126000 15140000 9909100 21461000 0 0 2088600 526970 0 5499 1803 4789 33641;33642;33643;33644;33645 21625;21626 21626 1 LLDAVDTYIPVPAR Unmodified 1541.8453 0.84534384 1683 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.63 68.837 2 1.2638E-17 30826 20181213_JW_Orientia_Karp_1_2 218.15 151.96 81395000 20117000 17778000 21115000 2995900 3642000 2919600 8702900 4124400 5500 1683 4790 33646;33647;33648;33649;33650;33651;33652;33653 21627;21628;21629;21630;21631;21632;21633;21634 21628 8 LLDEEEATDNDLR Unmodified 1531.7002 0.70019575 576 B7Z5C1;B4DHD2;Q4W4Y1;Q8WUM4;Q8WUM4-2 DRIP4;PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS 1 45.711 46.061 2 0.013443 16292 20181213_JW_Orientia_Karp_1_2 107.17 67.9 0 0 0 0 0 0 0 0 0 5501 576 4791 33654 21635 21635 1 LLDEEISR Unmodified 973.50803 0.50802529 1950 Q96PU8-5;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8 QKI Protein quaking yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 41.701 42.038 2 0.03946 13399 20181213_JW_Orientia_Karp_3_1 77.318 21.813 25807000 0 9864000 10194000 0 900190 0 4848600 0 5502 1950 4792 33655;33656;33657;33658 21636 21636 1 LLDFGSLSNLQVTQPTVGMNFK Oxidation (M) 2424.2359 0.23589654 1572 P0CW22;P08708 RPS17L;RPS17 40S ribosomal protein S17-like;40S ribosomal protein S17 yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 2 1 72.811 72.858 2;3 1.5955E-17 33253 20181213_JW_Orientia_Karp_1_3 182.7 138.9 383680000 120880000 14621000 51785000 0 40120000 27585000 126460000 2230200 5503 1572 4793 33659;33660;33661;33662;33663;33664;33665;33666;33667;33668;33669;33670 21637;21638;21639;21640;21641 21638 1197 5 LLDFGSLSNLQVTQPTVGMNFK Unmodified 2408.241 0.24098191 1572 P0CW22;P08708 RPS17L;RPS17 40S ribosomal protein S17-like;40S ribosomal protein S17 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 73.993 74.009 2;3 7.6832E-18 34035 20181213_JW_Orientia_Karp_1_3 181.6 125.58 161860000 68298000 39243000 54320000 0 0 0 0 0 5504 1572 4793 33671;33672;33673;33674;33675;33676 21642;21643;21644;21645;21646 21645 5 LLDKNQTAQVLQEK Deamidation (NQ) 1627.8781 0.87810054 1337 Karp_01411 yes yes 0 1 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 41.067 41.366 3 0.012434 12887 20181213_JW_Orientia_Karp_2_1 102.5 67.585 44870000 6342800 13319000 8906500 5140500 4677700 0 6483600 0 5505 1337 4794 33677;33678;33679;33680;33681;33682 21647;21648 21648 781 2 LLDLENELR Unmodified 1113.603 0.60298831 2032 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 59.795 60.015 2 0.0050011 25036 20181213_JW_Orientia_Karp_1_3 104.2 13.113 64693000 33144000 19559000 11150000 840200 0 0 0 0 + 5506 2032 4795 33683;33684;33685;33686;33687;33688;33689 21649;21650;21651 21651 3 LLDLVFLLDGSSR Unmodified 1446.8082 0.80823006 1466;1549 L8E853;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 76.234 76.234 2 0.0042967 28714 20181213_JW_Orientia_Karp_3_1 133.05 106.34 27446000 7390900 3912100 5028100 1059100 0 1203800 7948100 903460 5507 1466;1549 4796 33690;33691;33692;33693;33694;33695;33696 21652 21652 1 LLDNWDTLASTLSK Unmodified 1575.8144 0.81443765 800 CON__P15497 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 71.014 71.134 2 1.2562E-58 28366 20181213_JW_Orientia_Karp_3_2 272.59 207.31 175730000 30723000 38700000 26774000 7302400 16217000 7154800 40498000 8363700 + 5508 800 4797 33697;33698;33699;33700;33701;33702;33703;33704 21653;21654;21655;21656;21657;21658;21659 21659 7 LLDPEDVDVPQPDEK Unmodified 1707.8203 0.82031089 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;E9PMV1 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 56.552 56.842 2 0.0025215 23282 20181213_JW_Orientia_Karp_1_2 119.39 74.308 88503000 38553000 22837000 26984000 0 0 0 0 129480 5509 1803 4798 33705;33706;33707;33708 21660;21661;21662 21661 3 LLDQIVEK Unmodified 956.55425 0.5542472 638 B4E0X8;B4DWL1;E9PEB5;B4DT31;Q96AE4;Q96AE4-2;Q6PJY1;Q59FU3;C9JSZ1 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.985 47.176 2 0.005227 16226 20181213_JW_Orientia_Karp_2_3 119.21 26.048 23555000 7805000 5704300 3795700 0 3063100 3186800 0 0 5510 638 4799 33709;33710;33711;33712;33713;33714 21663;21664;21665;21666;21667 21667 5 LLDVNNQLNSRK 3 Deamidation (NQ) 1415.7256 0.72562264 1837 Q58F21-5;Q58F21-4;Q58F21;Q58F21-3;Q58F21-2 BRDT Bromodomain testis-specific protein yes no 0 3 0 1 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 28.979 29.323 3 0.039078 6561 20181213_JW_Orientia_Karp_2_2 43.897 17.185 68152000 23978000 5529700 6786600 0 1989400 1651400 12439000 15779000 5511 1837 4800 33715;33716;33717;33718;33719;33720;33721 21668 21668 2001 1 LLDYLQENPK Unmodified 1231.6449 0.64485312 287 A2TDT2;O95999 BCL10 B-cell lymphoma/leukemia 10 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 50.465 50.666 2 0.00080334 17877 20181213_JW_Orientia_Karp_2_2 128.27 67.297 7876500 0 0 0 0 2548300 5328200 0 0 5512 287 4801 33722;33723 21669;21670 21669 2 LLEAHEEQNVDSYTESVK Unmodified 2089.9804 0.98039335 35 M0R0Y2;A0A024R0R9;P54920;M0R213 NAPA Alpha-soluble NSF attachment protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 42.116 42.409 3 0.030099 14633 20181213_JW_Orientia_Karp_1_1 60.528 38.201 178690000 44947000 46110000 37154000 9520800 8782600 4021400 28155000 0 5513 35 4802 33724;33725;33726;33727;33728;33729;33730 21671;21672;21673 21671 3 LLEAQACTGGIIDPSTGER Unmodified 1986.9681 0.96805453 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;Q96IE3 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 54.063 54.413 2 0.018376 21708 20181213_JW_Orientia_Karp_1_2 96.773 60.999 10559000 0 10559000 0 0 0 0 0 0 5514 1803 4803 33731;33732 21674;21675 21675 2 LLEAQSHFR Unmodified 1099.5774 0.57744226 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16;Q14917 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 32.019 32.319 3 0.042015 9042 20181213_JW_Orientia_Karp_1_2 45.161 0.18054 16166000 11079000 4681800 0 405820 0 0 0 0 5515 316 4804 33733;33734;33735 21676 21676 1 LLEDGEDFNLGDALDSSNSMQTIQK Oxidation (M) 2755.2494 0.24943393 208 B2RA03;A0A024RAY2;P05783;I6L965 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 67.518 67.745 3 0.0012229 29997 20181213_JW_Orientia_Karp_1_2 91.481 65.877 24987000 14574000 5848700 0 812180 0 0 0 3752700 5516 208 4805 33736;33737;33738;33739 21677;21678 21678 159 2 LLEEALLR Unmodified 955.57023 0.57023162 878 E7EUY0;P78527-2;P78527 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By matching 1 1 54.543 54.669 2 0.036873 22278 20181213_JW_Orientia_Karp_1_1 78.77 28.138 24601000 23897000 0 0 0 703810 0 0 0 5517 878 4806 33740;33741 21679 21679 1 LLEEHAK Unmodified 838.45487 0.45486751 1699 Q53HT6;Q53G72;P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 18.787 19.017 2 0.027709 3533 20181213_JW_Orientia_Karp_1_2 92.467 23.291 9775000 3331900 3181400 2623300 0 0 246050 392360 0 5518 1699 4807 33742;33743;33744;33745;33746 21680 21680 1 LLEELEEGQK Unmodified 1186.6081 0.60813326 952 G3V2F7;Q13404;Q13404-7;Q13404-2;Q13404-1;E5RIF1;D6RG00;A0M8W4;H0YBX6;Q13404-8;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 46.325 46.618 2 0.0010479 16585 20181213_JW_Orientia_Karp_1_2 123.35 65.395 148070000 31837000 49974000 36482000 14495000 0 11808000 0 3475700 5519 952 4808 33747;33748;33749;33750;33751;33752;33753 21681;21682;21683;21684;21685;21686 21681 6 LLEEQLQHEISNK Unmodified 1579.8206 0.82058566 128 A0A024R663;Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS By matching 1 1 43.865 44.29 3 0.017986 15115 20181213_JW_Orientia_Karp_1_3 69.345 23.276 16234000 0 0 11775000 0 0 0 4459200 0 5520 128 4809 33754;33755 21687 21687 1 LLEEQVK Unmodified 857.48583 0.48583328 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 32.669 33.002 2 0.010519 8845 20181213_JW_Orientia_Karp_2_3 143.85 19.511 1680500000 337280000 409750000 391990000 278310000 0 53036000 210160000 0 5521 1375 4810 33756;33757;33758;33759;33760;33761 21688;21689 21689 2 LLEFQNK Unmodified 890.48617 0.48616764 1289 Karp_01161 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 40.501 40.861 2 0.019746 12646 20181213_JW_Orientia_Karp_2_1 102.77 20.468 58383000 0 11048000 14620000 4372200 17080000 0 11263000 0 5522 1289 4811 33762;33763;33764;33765;33766 21690 21690 1 LLEGEDAHLSSQQASGQSYSSR Unmodified 2349.0833 0.083295297 795 CON__P08779;P08779 KRT16 Keratin, type I cytoskeletal 16 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 38.366 38.656 3 0.0021393 11766 20181213_JW_Orientia_Karp_3_1 110.75 83.618 74995000 8515000 28971000 16652000 0 0 1910100 18947000 0 + 5523 795 4812 33767;33768;33769;33770;33771 21691;21692;21693;21694;21695 21695 5 LLEGEDAHLSSSQFSSGSQSSR Unmodified 2308.0567 0.056746196 790 CON__P02533;P02533;A0A024R1X6;Q13092;CON__Q61782 KRT14;K14 Keratin, type I cytoskeletal 14 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.524 42.817 3 1.6017E-06 13319 20181213_JW_Orientia_Karp_2_2 195.25 163.09 337180000 69055000 56926000 64631000 23518000 35060000 39448000 48541000 0 + 5524 790 4813 33772;33773;33774;33775;33776;33777;33778 21696;21697;21698;21699;21700;21701;21702;21703 21700 8 LLEGEESR Unmodified 931.46108 0.4610751 1571;811 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;Q9H319;H7C5W5;B3KWQ6;P41219;P41219-2;Q7L4M3;CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q96GE1;CON__Q9DCV7 HEL113;VIM;tmp_locus_29;DES;PRPH;KRT7 Vimentin;Desmin;Peripherin;Keratin, type II cytoskeletal 7 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 27.979 28.301 2 0.0049996 6049 20181213_JW_Orientia_Karp_3_2 140.09 38.805 562990000 183220000 162820000 159910000 8128900 10549000 11276000 27083000 0 + 5525 1571;811 4814 33779;33780;33781;33782;33783;33784;33785;33786 21704;21705;21706;21707;21708;21709;21710 21710 7 LLEIDPYLK Unmodified 1102.6274 0.62741214 1768 Q04446;Q59ET0 GBE1 1,4-alpha-glucan-branching enzyme yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 61.167 61.482 2 0.0051155 26706 20181213_JW_Orientia_Karp_1_1 103.74 35.515 49837000 22498000 0 12054000 1360300 5117800 6430300 108390 2267900 5526 1768 4815 33787;33788;33789;33790;33791;33792;33793;33794 21711;21712;21713;21714;21715 21711 5 LLELGPKPEVAQQTR Unmodified 1677.9414 0.94136949 1704 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 44.086 44.376 3 0.026809 15164 20181213_JW_Orientia_Karp_1_3 80.632 43.038 33919000 14620000 7822300 8920900 0 0 653640 1901600 0 5527 1704 4816 33795;33796;33797;33798;33799 21716 21716 1 LLELQPVINR Unmodified 1193.7132 0.71320746 1292 Karp_01179 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 56.902 57.102 2 0.0025888 23189 20181213_JW_Orientia_Karp_1_3 112.41 69.812 13225000 3526800 3752000 4810100 0 0 1135800 0 0 5528 1292 4817 33800;33801;33802;33803 21717;21718 21718 2 LLEMEVPEIYEGTIIIK Oxidation (M) 2005.0693 0.069331704 1365 Karp_01875 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 71.923 71.989 2 1.1657E-12 32607 20181213_JW_Orientia_Karp_1_3 194.06 95.9 95547000 18640000 0 15867000 10511000 15578000 8869400 26081000 0 5529 1365 4818 33804;33805;33806;33807;33808;33809 21719;21720;21721 21720 945 3 LLENIENPASQAISNTNISGSK Deamidation (NQ) 2300.1496 0.14958395 1362 Karp_01816 yes yes 0 1 0 0 By MS/MS 1 59.57 59.57 2 0.00089282 25367 20181213_JW_Orientia_Karp_1_1 132.4 102.94 0 0 0 0 0 0 0 0 0 5530 1362 4819 33810 21722 21722 824 1 LLENIENPASQAISNTNISGSK Unmodified 2299.1656 0.16556836 1362 Karp_01816 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 58.663 58.913 2 4.5924E-23 22337 20181213_JW_Orientia_Karp_2_2 252.37 179.69 86454000 20600000 30925000 19777000 5287400 5101400 4762800 0 0 5531 1362 4819 33811;33812;33813;33814;33815;33816 21723 21723 1 LLEPVLLLGK Unmodified 1093.7111 0.71108219 1727 P62249;M0R3H0;M0R210;Q6IPX4;M0R1M5;M0QX76 RPS16 40S ribosomal protein S16 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.142 69.286 2 0.00040276 31254 20181213_JW_Orientia_Karp_1_2 137.9 93.509 56291000 22534000 6326400 8926000 0 4098000 3006000 9478000 1923300 5532 1727 4820 33817;33818;33819;33820;33821;33822;33823 21724;21725;21726;21727;21728;21729;21730;21731 21726 8 LLESPGVEAGEGEAEK Unmodified 1613.7784 0.77844607 244 A0A024RCJ8;Q6ZTV1;Q6NYC8 hCG_1821276;PPP1R18 Phostensin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 42.505 42.842 2 0.00016362 14404 20181213_JW_Orientia_Karp_1_2 145.83 93.587 24348000 0 8619900 7354600 0 4944900 0 3428600 0 5533 244 4821 33824;33825;33826;33827 21732;21733;21734 21732 3 LLESQQPELEQVLAK Unmodified 1723.9356 0.93561541 1132;1373;1258;1265;1114 Karp_00298;Karp_00384;Karp_00536;Karp_01914;Karp_02350;Karp_01437;Karp_00991;Karp_02171;Karp_02493;Karp_01306;Karp_01677;Karp_01055;Karp_02464;Karp_01711;Karp_02079 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.624 58.874 2 3.6116E-37 24633 20181213_JW_Orientia_Karp_1_2 243.37 175.3 112020000 29237000 22131000 34625000 8964100 8713300 8346100 0 0 5534 1114;1132;1258;1265;1373 4822 33828;33829;33830;33831;33832;33833 21735;21736;21737;21738;21739;21740;21741 21737 7 LLESSLSSSEGEEPVEYK Unmodified 1981.9368 0.93679721 210 A8K6A5;A0A024RB01;P08648;B2R627 ITGA5 Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.622 50.884 2 8.1657E-24 19211 20181213_JW_Orientia_Karp_1_3 222.29 171.01 38137000 10645000 16390000 8504900 0 2382100 0 0 214840 5535 210 4823 33834;33835;33836;33837;33838 21742;21743;21744 21744 3 LLETECPQYIR Unmodified 1420.7021 0.70205043 1556 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 47.326 47.742 2 0.00042169 15342 20181213_JW_Orientia_Karp_3_2 144.65 60.035 42451000 0 0 0 0 6255900 4539600 3740100 27915000 5536 1556 4824 33839;33840;33841;33842;33843 21745;21746;21747 21747 3 LLETIDQLYLEYAK Unmodified 1710.908 0.90800368 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;Q86TX4;B3KUX9;B7Z2W3;H7C5W8;H0YJ11 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 73.16 73.217 2 1.6087E-46 33465 20181213_JW_Orientia_Karp_1_3 269.44 212.29 301690000 84735000 71146000 55382000 12809000 12363000 6494700 37704000 21054000 5537 133 4825 33844;33845;33846;33847;33848;33849;33850;33851 21748;21749;21750;21751;21752;21753 21751 6 LLEVLSGER Unmodified 1014.571 0.5709599 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2;F8W6C1 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 51.014 51.288 2 0.0030276 19446 20181213_JW_Orientia_Karp_1_3 113.62 51.076 7941900 0 5192700 2749200 0 0 0 0 0 5538 506 4826 33852;33853 21754;21755 21755 2 LLEVQSQVEELQK Unmodified 1541.8301 0.83008771 1895 Q86VS8 HOOK3 Protein Hook homolog 3 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.891 52.163 2 0.00057254 20612 20181213_JW_Orientia_Karp_1_1 151.55 106.91 19902000 6576500 6291300 0 0 4372500 1539400 0 1122800 5539 1895 4827 33854;33855;33856;33857;33858;33859 21756;21757;21758 21756 3 LLFEVFDENR Unmodified 1280.6401 0.6401021 121 H0Y8H4;P46934-4;A0A024R5S9;Q96PU5-3;Q96PU5-2;Q96PU5-6;Q96PU5-5;Q96PU5-7;Q96PU5 NEDD4;NEDD4L E3 ubiquitin-protein ligase NEDD4-like yes no 0 0 0 0 By MS/MS By matching 1 1 68.366 68.571 2 0.0011996 30842 20181213_JW_Orientia_Karp_1_1 120.31 48.063 1783100 1553700 0 0 0 0 0 0 229360 5540 121 4828 33860;33861 21759 21759 1 LLFNDVQTLK Unmodified 1189.6707 0.67067394 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;E9PMV1 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 56.888 57.368 2 0.0031046 23658 20181213_JW_Orientia_Karp_1_2 109.83 32.512 24412000 0 21195000 0 0 0 0 0 3216700 5541 1803 4829 33862;33863;33864 21760;21761;21762 21761 3 LLGCDVVIYDTAGR Unmodified 1550.7763 0.776278 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.114 59.364 2 0.00031362 25283 20181213_JW_Orientia_Karp_1_1 150.68 88.868 129720000 37341000 41872000 28190000 11084000 0 11228000 0 0 5542 1270 4830 33865;33866;33867;33868;33869;33870 21763;21764;21765;21766;21767 21763 5 LLGELLQDNAK Unmodified 1212.6714 0.67140222 920 F2Z393;P37837 TALDO1 Transaldolase yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 54.247 54.597 2 1.7622E-06 19958 20181213_JW_Orientia_Karp_2_2 179.42 105.12 16111000 0 0 0 4880900 6182000 5048400 0 0 5543 920 4831 33871;33872;33873 21768;21769 21769 2 LLGIETPLPK Unmodified 1079.659 0.65904662 1052 K7EKL8;Q5NKV8;P05362 ICAM1 Intercellular adhesion molecule 1 yes no 0 0 0 0 By MS/MS 1 59.118 59.567 2 0.036619 22922 20181213_JW_Orientia_Karp_2_1 86.67 38.927 0 0 0 0 0 0 0 0 0 5544 1052 4832 33874 21770 21770 1 LLGNVLVVVLAR Unmodified 1264.8231 0.82309226 812 CON__Q3SX09;CON__P02070 yes no 0 0 0 0 By MS/MS 1 73.188 73.297 2 0.0029922 29626 20181213_JW_Orientia_Karp_3_2 134.77 88.637 0 0 0 0 0 0 0 0 0 + 5545 812 4833 33875 21771 21771 1 LLGPIMK Oxidation (M) 786.46735 0.46734645 1094 Karp_00243 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 39.437 39.726 2 0.035732 13272 20181213_JW_Orientia_Karp_1_1 81.716 24.614 247150000 143390000 70580000 0 0 18378000 0 14801000 0 5546 1094 4834 33876;33877;33878;33879 21772;21773 21772 2 LLGPIMK Unmodified 770.47243 0.47243183 1094 Karp_00243 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 47.179 47.367 2 0.02579 16260 20181213_JW_Orientia_Karp_2_3 94.95 41.429 122310000 89742000 25505000 0 0 2247300 4810900 0 0 5547 1094 4834 33880;33881;33882;33883 21774 21774 1 LLGPVLVK Unmodified 837.56878 0.56877505 1503 Q5STK2;O15212;I7HJT1;A2AB88 PFDN6;HKE2 Prefoldin subunit 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1 51.336 51.638 2 0.005063 19869 20181213_JW_Orientia_Karp_1_2 121.68 80.998 325220000 27644000 77927000 7599300 125320000 25492000 61123000 0 111140 5548 1503 4835 33884;33885;33886;33887;33888;33889;33890;33891 21775;21776;21777;21778;21779;21780 21776 6 LLGQFNFEGIPPAR Unmodified 1557.8304 0.83036248 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 1 1 1 66.686 66.877 2 5.9692E-18 29414 20181213_JW_Orientia_Karp_1_2 222.2 168.45 952840000 269220000 194030000 245990000 3956200 97275000 82112000 56647000 3615400 5549 1074 4836 33892;33893;33894;33895;33896;33897;33898;33899;33900;33901;33902;33903 21781;21782;21783;21784;21785;21786;21787;21788 21784 8 LLGQFNFEGIPPAR Deamidation (NQ) 1558.8144 0.81437807 1074 Karp_00050 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 1 2 1 70.105 70.243 2 6.7218E-05 27533 20181213_JW_Orientia_Karp_2_2 166.11 106.04 104970000 20965000 17628000 19366000 3771400 8653400 3084500 21489000 10014000 5550 1074 4836 33904;33905;33906;33907;33908;33909;33910;33911;33912;33913;33914;33915;33916 21789;21790;21791;21792;21793;21794;21795 21794 415 6 LLGWIQNK Unmodified 970.56 0.56000128 1520;1615;1797 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98;O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 51.698 52.043 2 9.6667E-05 18626 20181213_JW_Orientia_Karp_2_2 199.4 94.96 249380000 67844000 68649000 40993000 25713000 17468000 16739000 10697000 1275300 5551 1615;1520;1797 4837 33917;33918;33919;33920;33921;33922;33923;33924 21796;21797;21798;21799;21800;21801;21802 21800 7 LLHDQVGVIQFGPYK Unmodified 1712.925 0.92499115 1704 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 54.974 55.274 3 0.020657 22716 20181213_JW_Orientia_Karp_1_1 63.727 30.462 22548000 14717000 5936300 0 1894700 0 0 0 0 5552 1704 4838 33925;33926;33927 21803 21803 1 LLHEVQELTTEVEK Unmodified 1666.8778 0.87776618 930 V9HW58;Q53H88;F5H2S7;Q13561;Q13561-3;Q13561-2;A8K8J9;F8W1I6;B3KTX4;F8VW18;F8VRV7;H0YHL1;F8VX93 HEL-S-77;DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 1 1 50.322 50.601 2;3 1.2192E-05 17795 20181213_JW_Orientia_Karp_2_1 175.48 120.13 151650000 31035000 41354000 16719000 37241000 20026000 4719600 0 552100 5553 930 4839 33928;33929;33930;33931;33932;33933;33934;33935;33936;33937;33938;33939 21804;21805;21806;21807;21808 21806 5 LLHQDEWNK Unmodified 1181.5829 0.58292157 1398 Karp_02184 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 30.175 30.577 3 0.00058938 8194 20181213_JW_Orientia_Karp_1_3 123.21 69.433 69814000 29828000 6253100 14813000 4619300 4797600 0 6407700 3096400 5554 1398 4840 33940;33941;33942;33943;33944;33945;33946 21809;21810;21811;21812;21813;21814;21815 21811 7 LLIDEAILK Unmodified 1026.6325 0.63249752 1685 Q0VGA5;Q53HA4;Q5T5C7;P49591 SARS Serine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 62.918 63.093 2 0.0077017 26946 20181213_JW_Orientia_Karp_1_3 98.629 25.591 40328000 26210000 0 10197000 310680 0 3609800 0 0 5555 1685 4841 33947;33948;33949;33950;33951 21816;21817 21816 2 LLIHQSLAGGIIGVK Unmodified 1517.9293 0.92934824 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2;B4DFF1;Q5T6W1 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 53.6 53.849 3 3.4368E-05 21075 20181213_JW_Orientia_Karp_1_3 198.48 181.95 89332000 40894000 0 28971000 6545000 0 12922000 0 0 5556 63 4842 33952;33953;33954;33955;33956 21818;21819;21820 21819 3 LLINDPAAEQFNVQSLLNYVITR Unmodified 2630.4068 0.40680169 1167 Karp_00621 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 77.493 77.473 3 0.0085649 36563 20181213_JW_Orientia_Karp_1_1 62.707 42.451 22548000 6382500 4480300 0 0 3655300 1576100 6454200 0 5557 1167 4843 33957;33958;33959;33960;33961 21821 21821 1 LLIQWYEDLVHSR Unmodified 1670.878 0.87804096 1398 Karp_02184 yes yes 0 0 0 0 By MS/MS 1 68.02 68.02 3 0.042103 30537 20181213_JW_Orientia_Karp_1_1 45.257 17.848 5495800 5495800 0 0 0 0 0 0 0 5558 1398 4844 33962 21822 21822 1 LLIVESPAK Unmodified 968.59063 0.59063271 1109 Karp_00291 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 47.081 47.326 2 0.0033784 16353 20181213_JW_Orientia_Karp_1_3 111.95 75.187 146020000 17541000 56056000 40428000 14220000 6594600 8816400 0 2367400 5559 1109 4845 33963;33964;33965;33966;33967;33968;33969;33970;33971;33972 21823;21824;21825;21826;21827;21828;21829 21824 7 LLLATMESMNGGK Oxidation (M);Deamidation (NQ) 1380.6629 0.66288773 1538 V9HW83;V9HVX6;P00352;B4DDF8;Q5SYQ9;Q5SYQ8;Q5SYQ7;Q59EJ0 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 1 1 0 By MS/MS By matching By matching 1 1 1 53.076 53.397 2 0.0024933 21472 20181213_JW_Orientia_Karp_1_1 129 93.349 21681000 13139000 7731400 0 0 0 0 0 811070 5560 1538 4846 33973;33974;33975 21830 21830 1025 1146 1 LLLDPSSPPTK Unmodified 1166.6547 0.65468953 925 H0YFI1;F5H479;F5GX19;F5H3Y3;Q6IAA8 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 49.422 49.774 2 0.021886 17385 20181213_JW_Orientia_Karp_2_2 84.213 35.93 41164000 0 14444000 11750000 6267200 2458600 4384400 0 1859100 5561 925 4847 33976;33977;33978;33979;33980;33981 21831;21832;21833;21834;21835 21834 5 LLLDSGLDVSALQEK Unmodified 1599.872 0.87195253 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 67.821 68.022 2 2.0851E-134 27164 20181213_JW_Orientia_Karp_2_3 340.88 226.02 1341800000 221190000 209840000 211960000 0 170480000 84855000 301470000 142050000 5562 1126 4848 33982;33983;33984;33985;33986;33987;33988;33989 21836;21837;21838;21839;21840;21841;21842;21843 21841 8 LLLIGDSGVGK Unmodified 1070.6336 0.63356015 902;986;1720 H0YNE9;Q92930;Q53SX4;H0YLJ8;H0YL94;B3KTE3;H0YMN7;G5ELZ6;G5ELZ5;Q59EP4;D3DV69;B4DMS1;A0A024RB27;A0A024R7I3;G5EMR8;Q504R6;P62820-3;P51153;P61006-2;P61006;P59190-2;P59190;P61026;E9PLD0;Q6FIG4;Q9H0U4;Q9H1C9;E7END7;B7Z8M7;Q5U0I6;P62820-2;Q92928;P62820 RAB8B;RAB10;RAB15;hCG_1996054;hCG_24991;RAB8A;RAB13;RAB1A;RAB1B;RAB1C Ras-related protein Rab-8B;Ras-related protein Rab-1A;Ras-related protein Rab-13;Ras-related protein Rab-8A;Ras-related protein Rab-15;Ras-related protein Rab-10;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 55.826 56.164 2 0.0012519 22525 20181213_JW_Orientia_Karp_1_3 125.71 0 71961000 0 0 12717000 0 10645000 20533000 28067000 0 5563 986;1720;902 4849 33990;33991;33992;33993;33994 21844;21845;21846;21847;21848 21845 5 LLLLGAGESGK Unmodified 1056.6179 0.61791009 1555 P04899;P04899-4;Q93020;P63096;P08754;A2A2R6;Q5JWD1;H0Y7E8;Q5JWE9;H0Y7F4;A0A024R2Z1;Q8N2B4;Q5T697;B3KP89;Q5FWY2;A8K1Y9;P11488;P19087;P09471-2;P09471;A8MTJ3;P63092-3;P63092-2;P38405;P63092;P63092-4;P38405-2;Q5JWF2-2;Q5JWF2 GNAI2;WUGSC:H_LUCA16.1;GNAI1;GNAI3;GNAS;GNAT1;GNAT2;GNAL;GNAO1;GNAT3 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 51.689 52.034 2 0.0050326 20603 20181213_JW_Orientia_Karp_1_1 105.2 0 112470000 24407000 34535000 17753000 13358000 6801500 11804000 2863200 948040 5564 1555 4850 33995;33996;33997;33998;33999;34000;34001;34002 21849;21850;21851;21852;21853;21854 21849 6 LLLNNDNLLR Unmodified 1196.6877 0.68772099 32;295 A8K0T9;A0A024R0E5;P52907;C9JUG7;F8W9N7;Q53GE2;Q53GC7;A4D0V4;P47755-2;P47755 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 56.354 56.712 2 2.226E-08 23661 20181213_JW_Orientia_Karp_1_1 195.79 91.421 198120000 36676000 56061000 62997000 17090000 9992700 14228000 79662 1000400 5565 32;295 4851 34003;34004;34005;34006;34007;34008;34009;34010 21855;21856;21857;21858;21859;21860;21861 21855 7 LLLNNDNLLR Deamidation (NQ) 1197.6717 0.67173657 32;295 A8K0T9;A0A024R0E5;P52907;C9JUG7;F8W9N7;Q53GE2;Q53GC7;A4D0V4;P47755-2;P47755 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 0 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 2 2 2 1 2 63.186 63.478 2 0.002014 25086 20181213_JW_Orientia_Karp_2_3 122.28 47.068 25630000 0 3476400 10492000 377710 6367700 3604400 0 1312700 5566 32;295 4851 34011;34012;34013;34014;34015;34016;34017;34018;34019;34020 21862;21863;21864 21864 4;5 3 LLLPGELAK Unmodified 952.59572 0.59571809 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;Q96A08;L0R4T3;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BA;ABCF2;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 3 2 3 2 2 56.634 56.975 2 0.0049515 25485 20181213_JW_Orientia_Karp_1_2 104.44 29.248 63520000000 27086000000 26727000000 90268000 4297500000 1555000000 3740200000 15795000 8816800 5567 449;1624;1817 4852 34021;34022;34023;34024;34025;34026;34027;34028;34029;34030;34031;34032;34033;34034;34035;34036;34037;34038;34039 21865;21866;21867;21868;21869;21870;21871;21872 21866 8 LLLPWLEAR Unmodified 1109.6597 0.65971533 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 72.439 72.513 2 0.0061367 33355 20181213_JW_Orientia_Karp_1_1 101.72 55.296 85227000 22294000 23761000 15917000 0 0 0 23254000 0 5568 1757 4853 34040;34041;34042;34043 21873;21874;21875;21876 21873 4 LLLQVQHASK Unmodified 1135.6713 0.67134264 1023;1557 I7HJJ0;Q6I9V5;P12236;Q59EI9;V9GYG0;A8K787;P12235;P05141;Q6NVC0 SLC25A6;SLC25A4;SLC25A5 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed no no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 33.556 33.872 2;3 0.0069211 9408 20181213_JW_Orientia_Karp_3_1 84.817 25.572 228380000 36055000 37787000 83734000 2601600 5930600 0 59548000 2727600 5569 1023;1557 4854 34044;34045;34046;34047;34048;34049;34050;34051;34052;34053 21877;21878;21879;21880 21880 4 LLLSNSSGSTSIELTQELEQQITK Unmodified 2618.3651 0.36505603 1125 Karp_00328 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 71.889 71.989 3 9.062E-21 32960 20181213_JW_Orientia_Karp_1_1 180.31 125.46 113420000 29546000 32713000 18152000 6343400 13687000 0 12977000 0 5570 1125 4855 34054;34055;34056;34057;34058;34059 21881;21882;21883;21884 21881 4 LLLSNSSGSTSIELTQELEQQITK Deamidation (NQ) 2619.3491 0.34907162 1125 Karp_00328 yes yes 0 1 0 0 By matching By matching By MS/MS 1 1 1 74.041 74.057 3 0.024749 34073 20181213_JW_Orientia_Karp_1_3 57.981 32.654 62253000 25088000 18052000 19113000 0 0 0 0 0 5571 1125 4855 34060;34061;34062 21885 21885 508 1 LLLSSETPIEGK Unmodified 1285.7129 0.71293269 966 H0Y512;Q9HDC9-2;Q9HDC9 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 50.905 51.25 2 0.00017801 19582 20181213_JW_Orientia_Karp_1_2 160.75 92.019 98939000 30072000 24985000 13606000 7795700 3932900 5303400 11281000 1963100 5572 966 4856 34063;34064;34065;34066;34067;34068;34069;34070 21886;21887;21888;21889;21890 21887 5 LLLSSLEEAK Unmodified 1101.6281 0.62814043 802 CON__P17697 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 52.764 53.13 2 0.0062454 19411 20181213_JW_Orientia_Karp_2_3 100.25 45.469 29987000 4979400 5637800 0 7621700 4455500 6105600 998040 188920 + 5573 802 4857 34071;34072;34073;34074;34075;34076;34077 21891;21892 21892 2 LLNDEDPVVVTK Unmodified 1340.7187 0.71874635 924;555;59 B4DE59;C9JTX4;C9J826;C9JK18;C9JKY1;F5GWP8;A0A024R1X8;P14923 JUP;KRT17 Junction plakoglobin no no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 49.564 49.755 2 0.0090366 18599 20181213_JW_Orientia_Karp_1_2 99.343 34.186 46410000 16712000 13065000 10833000 0 2654200 3145800 0 0 5574 555;924;59 4858 34078;34079;34080;34081;34082 21893 21893 1 LLNGELKQLYTAITR Deamidation (NQ) 1732.9723 0.97233527 708 B7WP88;O15050 TRANK1 TPR and ankyrin repeat-containing protein 1 yes no 0 1 0 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 56.241 56.562 3 0.041339 21282 20181213_JW_Orientia_Karp_2_3 66.285 34.217 156180000 35777000 42819000 39429000 13134000 10409000 14440000 172360 0 5575 708 4859 34083;34084;34085;34086;34087;34088;34089 21894 21894 0 LLNGNDQIAQLYK Unmodified 1488.7936 0.79364262 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 2 53.818 54.171 2 7.4975E-18 21707 20181213_JW_Orientia_Karp_1_1 223.87 173.07 3942900000 1168400000 649920000 940960000 358810000 396790000 356370000 0 71638000 5576 1371 4860 34090;34091;34092;34093;34094;34095;34096;34097;34098;34099 21895;21896;21897;21898;21899;21900;21901;21902;21903;21904 21895 10 LLNGNDQIAQLYK Deamidation (NQ) 1489.7777 0.77765821 1371 Karp_02001 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13 11 12 6 8 8 13 9 62.681 62.943 2;3 3.7059E-58 21764 20181213_JW_Orientia_Karp_2_3 277.1 185.84 77546000000 23010000000 18818000000 15374000000 6883900000 6655900000 5413800000 196200000 1193800000 5577 1371 4860 34100;34101;34102;34103;34104;34105;34106;34107;34108;34109;34110;34111;34112;34113;34114;34115;34116;34117;34118;34119;34120;34121;34122;34123;34124;34125;34126;34127;34128;34129;34130;34131;34132;34133;34134;34135;34136;34137;34138;34139;34140;34141;34142;34143;34144;34145;34146;34147;34148;34149;34150;34151;34152;34153;34154;34155;34156;34157;34158;34159;34160;34161;34162;34163;34164;34165;34166;34167;34168;34169;34170;34171;34172;34173;34174;34175;34176;34177;34178;34179 21905;21906;21907;21908;21909;21910;21911;21912;21913;21914;21915;21916;21917;21918;21919;21920;21921;21922;21923;21924;21925;21926;21927;21928;21929;21930;21931;21932;21933;21934;21935;21936;21937;21938;21939;21940;21941;21942;21943;21944;21945;21946;21947;21948;21949;21950;21951;21952;21953;21954;21955 21942 843;844;1850;1851 50 LLNGNDQIAQLYK 2 Deamidation (NQ) 1490.7617 0.76167379 1371 Karp_02001 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 6 4 5 5 2 4 62.223 62.484 2 5.7466E-17 26339 20181213_JW_Orientia_Karp_1_2 218.55 156.79 14058000000 4193400000 3013600000 3396200000 321590000 1612100000 1169800000 70544000 281280000 5578 1371 4860 34180;34181;34182;34183;34184;34185;34186;34187;34188;34189;34190;34191;34192;34193;34194;34195;34196;34197;34198;34199;34200;34201;34202;34203;34204;34205;34206;34207;34208;34209;34210;34211;34212;34213 21956;21957;21958;21959;21960;21961;21962;21963;21964;21965;21966;21967;21968;21969;21970;21971;21972;21973;21974;21975;21976;21977 21960 843;844;1850;1851 19 LLNGNDQIAQLYK 4 Deamidation (NQ) 1492.7297 0.72970496 1371 Karp_02001 yes yes 0 4 0 0 By MS/MS 1 60.367 60.618 2 0.039467 23488 20181213_JW_Orientia_Karp_2_3 94.82 27.568 16523000 0 0 0 0 0 16523000 0 0 5579 1371 4860 34214 21978 21978 843;844;1850;1851 0 LLNGNDQIAQLYKDLVK Deamidation (NQ) 1945.052 0.052042156 1371 Karp_02001 yes yes 0 1 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 2 2 2 1 69.935 70.068 3 0.0029843 31947 20181213_JW_Orientia_Karp_1_2 113.43 87.201 415510000 87263000 49079000 68200000 15435000 68396000 34533000 82794000 9810400 5580 1371 4861 34215;34216;34217;34218;34219;34220;34221;34222;34223;34224;34225;34226;34227;34228 21979;21980 21979 843;844;1850;1851 2 LLNGNDQIAQLYKDLVK Unmodified 1944.068 0.068026571 1371 Karp_02001 yes yes 0 0 0 1 By matching By MS/MS 1 1 66.147 66.247 3 0.042886 26290 20181213_JW_Orientia_Karp_2_3 69.594 28.208 26328000 0 0 0 0 14371000 11957000 0 0 5581 1371 4861 34229;34230 21981 21981 1 LLNIWQER Unmodified 1070.5873 0.58727866 1981 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 54.956 55.293 2 0.019773 20451 20181213_JW_Orientia_Karp_2_1 88.37 36.582 19821000 0 10927000 4213100 1737200 0 2943700 0 0 5582 1981 4862 34231;34232;34233;34234 21982;21983 21983 2 LLNNIVNK Unmodified 926.55492 0.5549159 1182 Karp_00659 yes yes 0 0 0 0 By MS/MS By matching 1 1 39.959 40.134 2 0.0041791 13495 20181213_JW_Orientia_Karp_1_1 143.02 82.047 89792000 39970000 49822000 0 0 0 0 0 0 5583 1182 4863 34235;34236 21984 21984 1 LLNPGYDVEIIEMHHK Oxidation (M) 1922.956 0.95603328 1441 Karp_02410 yes yes 0 0 1 0 By MS/MS 1 48.857 49.406 4 0.0056565 17126 20181213_JW_Orientia_Karp_2_1 92.457 63.444 5011500 0 0 0 5011500 0 0 0 0 5584 1441 4864 34237 21985 21985 1041 1 LLNYLVDEFK Unmodified 1252.6703 0.67033959 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 2 2 65.753 65.951 1;2 1.2166E-24 28271 20181213_JW_Orientia_Karp_1_3 242.39 185.95 1756400000 359940000 322490000 373540000 35993000 405600000 166780000 34864000 57163000 5585 1074 4865 34238;34239;34240;34241;34242;34243;34244;34245;34246;34247;34248;34249;34250;34251;34252;34253;34254;34255;34256;34257 21986;21987;21988;21989;21990;21991;21992;21993;21994;21995;21996;21997;21998;21999;22000;22001 21992 14 LLNYLVDEFK Deamidation (NQ) 1253.6544 0.65435518 1074 Karp_00050 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 69.292 69.408 2 7.4406E-05 30121 20181213_JW_Orientia_Karp_1_2 157.66 112.33 92191000 22282000 7533700 35849000 1212300 11876000 5694400 7743700 0 5586 1074 4865 34258;34259;34260;34261;34262;34263;34264;34265;34266 22002;22003;22004;22005;22006;22007;22008;22009;22010 22004 416 9 LLNYLVDEFKK Unmodified 1380.7653 0.76530261 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 55.288 55.604 2;3 0.00021554 20456 20181213_JW_Orientia_Karp_2_2 143 99.613 1747400000 583210000 245470000 190310000 40504000 356340000 321060000 0 10481000 5587 1074 4866 34267;34268;34269;34270;34271;34272;34273;34274;34275;34276;34277;34278;34279;34280 22011;22012;22013;22014;22015;22016;22017;22018;22019 22014 7 LLNYLVDEFKK Deamidation (NQ) 1381.7493 0.74931819 1074 Karp_00050 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 56.76 56.959 3 0.029879 23795 20181213_JW_Orientia_Karp_1_1 69.815 17.026 40096000 14860000 9774300 7764000 0 0 7697400 0 0 5588 1074 4866 34281;34282;34283;34284 22020;22021;22022 22020 416 2 LLPHMGISLK Unmodified 1107.6474 0.64743608 1105 Karp_00283 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 2 1 48.065 48.24 3 0.027438 17280 20181213_JW_Orientia_Karp_1_3 74.165 21.228 92140000 51659000 32841000 5938700 0 1701700 0 0 0 5589 1105 4867 34285;34286;34287;34288;34289 22023;22024 22024 2 LLPLEEHYR Unmodified 1168.6241 0.6240581 36;108 A0A024R0S6;Q9NZN4;B4DLA1;Q8NCJ3;C9JIJ3;C9IZH1;C9JC03;B4DZH9;B2R5U3;A0A024R571;Q9H4M9 EHD2;EHD1 EH domain-containing protein 2;EH domain-containing protein 1 no no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 41.36 41.61 3 0.042802 13670 20181213_JW_Orientia_Karp_1_3 53.775 24.241 84389000 66935000 8690800 8531000 127550 0 104790 0 0 5590 36;108 4868 34290;34291;34292;34293;34294 22025 22025 1 LLPNLSQNEVMQVK Oxidation (M) 1627.8603 0.86034198 1109 Karp_00291 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.083 50.428 2 1.1605E-06 19460 20181213_JW_Orientia_Karp_1_1 179.6 125.12 163040000 40286000 32838000 19700000 20270000 12190000 14063000 14437000 9256500 5591 1109 4869 34295;34296;34297;34298;34299;34300;34301;34302 22026;22027;22028;22029;22030;22031;22032;22033 22026 630 8 LLPNLSQNEVMQVK Unmodified 1611.8654 0.86542736 1109 Karp_00291 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 56.304 56.662 2 0.032698 23619 20181213_JW_Orientia_Karp_1_1 103.43 63.557 116540000 47913000 31621000 20475000 6262500 7280800 2450800 134670 399700 5592 1109 4869 34303;34304;34305;34306;34307;34308;34309;34310 22034 22034 0 LLPQLTYLDGYDR Unmodified 1565.809 0.80895834 985 H0YN26;Q6PKH8;Q08AJ6;P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A no no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 66.481 66.688 2 0.001365 26141 20181213_JW_Orientia_Karp_2_2 133.32 98.629 66445000 8866200 3096700 8213900 11765000 19174000 7593500 3762100 3972700 5593 985 4870 34311;34312;34313;34314;34315;34316;34317;34318 22035;22036;22037;22038 22037 4 LLQAYGNLVNFHRMIKLTTGK Acetyl (Protein N-term);3 Deamidation (NQ) 2461.3039 0.30391652 1953 Q96RW8 PLA2 Phospholipase A(2) yes yes 1 3 0 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 71.96 72.029 3 0.034355 29330 20181213_JW_Orientia_Karp_2_3 44.816 6.8173 177900000 61863000 0 51215000 17289000 0 10313000 37221000 0 5594 1953 4871 34319;34320;34321;34322;34323 22039 22039 2073 1 LLQDEFLQQANQYQK Unmodified 1864.9319 0.93192702 1392 Karp_02141 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 56.966 57.29 2;3 1.7083E-114 23872 20181213_JW_Orientia_Karp_1_1 331.54 262.76 1114100000 224740000 206690000 294200000 76287000 143210000 83987000 5722500 79234000 5595 1392 4872 34324;34325;34326;34327;34328;34329;34330;34331;34332;34333;34334;34335;34336;34337;34338 22040;22041;22042;22043;22044;22045;22046;22047;22048;22049;22050;22051;22052;22053 22040 14 LLQDEFLQQANQYQK Deamidation (NQ) 1865.9159 0.9159426 1392 Karp_02141 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 3 1 1 1 1 1 58.193 58.518 2 6.9939E-20 23420 20181213_JW_Orientia_Karp_1_2 224.25 178.48 68559000 13900000 30308000 14298000 3109200 3159800 0 3783600 0 5596 1392 4872 34339;34340;34341;34342;34343;34344;34345;34346;34347 22054;22055;22056;22057;22058;22059;22060;22061 22055 892;1868 8 LLQDFFNGK Deamidation (NQ) 1081.5444 0.5444108 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PNE6;B4E1Q1;E9PN89;A8K7Q2;A0A024R6B5;P54652;B3KUS2;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5 HEL-S-72p;HSPA8;HSPA2;HSPA6 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.923 61.216 2 0.0029054 25745 20181213_JW_Orientia_Karp_1_3 123.35 62.595 58788000 30304000 5228900 6269100 1571900 0 11089000 0 4324600 5597 1586 4873 34348;34349;34350;34351;34352;34353;34354 22062;22063;22064;22065;22066;22067;22068 22064 1060 7 LLQDFFNGR Deamidation (NQ) 1109.5506 0.55055881 369 A8K5I0;P08107-2;P08107;B4DFN9;B4DNT8;Q59EJ3;B4E388;B4DI39;B4DWK5;B4E1T6;B4DNX1;B4DVU9;B4E1S9;V9GZ37;B3KTT5 HEL-S-103;HSPA1A Heat shock 70 kDa protein 1A yes no 0 1 0 0 By MS/MS By matching 1 1 63.171 63.475 2 0.0063088 26873 20181213_JW_Orientia_Karp_1_3 111.61 56.831 1875000 0 0 1714800 0 0 0 0 160190 5598 369 4874 34355;34356 22069 22069 144 1 LLQDSVDFSLADAINTEFK Unmodified 2125.0579 0.057915395 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 1 2 1 1 74.652 74.673 2 8.3381E-121 34530 20181213_JW_Orientia_Karp_1_1 319.74 225.9 1573700000 556050000 317360000 574080000 4947000 0 26014000 95244000 0 5599 1571 4875 34357;34358;34359;34360;34361;34362;34363;34364;34365 22070;22071;22072;22073;22074;22075;22076;22077;22078 22070 9 LLQDSVDFSLADAINTEFKNTR Deamidation (NQ) 2497.2336 0.23364793 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 1 0 1 By MS/MS 1 72.135 72.284 3 0.040372 33187 20181213_JW_Orientia_Karp_1_2 54.047 21.331 0 0 0 0 0 0 0 0 0 5600 1571 4876 34366 22079 22079 1 LLQEYGYHIPDNVDLNK Unmodified 2030.0109 0.010905622 1135 Karp_00415 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 54.839 55.161 3 0.020714 20356 20181213_JW_Orientia_Karp_2_1 101.9 64.72 373200000 80089000 79183000 84819000 25441000 69467000 33922000 278050 0 5601 1135 4877 34367;34368;34369;34370;34371;34372;34373 22080;22081 22080 2 LLQLGLK Unmodified 783.52182 0.52182486 1134 Karp_00400 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.175 50.435 2 0.0089339 18807 20181213_JW_Orientia_Karp_1_3 144.29 41.009 51229000 5705900 11847000 0 20951000 4909400 7815400 0 0 5602 1134 4878 34374;34375;34376;34377;34378;34379;34380 22082;22083;22084;22085;22086;22087;22088 22084 7 LLQLQEQMR Oxidation (M) 1173.6176 0.61759251 1601 Q4LE79;P15924-2;P15924-3;P15924;B4E2A0 DSP variant protein;DSP Desmoplakin yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 39.747 39.985 2 0.0013815 12465 20181213_JW_Orientia_Karp_2_3 122.33 42.11 11793000 3182300 0 0 6389800 1619800 600890 0 0 5603 1601 4879 34381;34382;34383;34384 22089;22090;22091 22091 1228 3 LLQSNQQVDELYSK Unmodified 1663.8417 0.84171503 1306 Karp_01247 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.573 46.893 2 7.7439E-12 15770 20181213_JW_Orientia_Karp_2_1 203.74 168.56 257900000 60981000 57513000 51467000 24639000 18041000 21485000 7398500 16374000 5604 1306 4880 34385;34386;34387;34388;34389;34390;34391;34392 22092;22093;22094;22095;22096;22097;22098;22099;22100;22101 22096 10 LLQTAATAAQQGGQANHPTAAVVTEK Unmodified 2575.3354 0.33542766 695 B5BTZ6;P40763-3;P40763-2;P40763;G8JLH9;B4DNP0;B7ZA24;B4DVR6 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 40.043 40.385 3 0.00072309 12916 20181213_JW_Orientia_Karp_1_3 75.106 56.084 49110000 17588000 12243000 14160000 0 0 0 3911300 1207000 5605 695 4881 34393;34394;34395;34396;34397 22102;22103;22104;22105 22105 4 LLQVTPADSGEYVCR Unmodified 1706.8298 0.82977013 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.327 51.728 2 0.00059223 17725 20181213_JW_Orientia_Karp_3_2 158.86 105.1 31328000 0 0 0 8660000 6783800 4815400 11069000 0 5606 195 4882 34398;34399;34400;34401;34402 22106;22107;22108;22109 22109 4 LLRDYQELMNTK Oxidation (M) 1538.7763 0.776278 995;996;814 CON__Q3TTY5;H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 1 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 37.465 37.787 3 0.010291 11335 20181213_JW_Orientia_Karp_3_1 105.65 65.583 100790000 35242000 15155000 16870000 5943200 10227000 3764300 13590000 0 + 5607 814;995;996 4883 34403;34404;34405;34406;34407;34408;34409 22110 22110 475 1 LLSAEEDDLNLFHK Unmodified 1642.8203 0.82025131 1431 Karp_02388 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 55.84 56.05 3 0.0023252 22402 20181213_JW_Orientia_Karp_1_3 145.29 93.453 164140000 86423000 7504300 30310000 0 15216000 24689000 0 0 5608 1431 4884 34410;34411;34412;34413;34414 22111;22112;22113;22114;22115 22113 5 LLSCIITTK Unmodified 1047.5998 0.59981719 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.53 48.831 2 0.00092956 18429 20181213_JW_Orientia_Karp_1_1 132.76 48.19 139740000 30589000 46954000 22544000 13750000 6718800 6278400 0 12904000 5609 1449 4885 34415;34416;34417;34418;34419;34420;34421 22116;22117;22118;22119;22120;22121;22122 22116 7 LLSDVGLVGLPNAGK Unmodified 1451.8348 0.83477916 1292 Karp_01179 yes yes 0 0 0 0 By MS/MS 1 64.014 64.264 2 0.017838 27998 20181213_JW_Orientia_Karp_1_2 103.21 77.275 0 0 0 0 0 0 0 0 0 5610 1292 4886 34422 22123 22123 1 LLSGPYFWSLPSR Unmodified 1521.798 0.79799972 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 71.673 71.751 2 0.001482 32757 20181213_JW_Orientia_Karp_1_2 120.86 60.688 95267000 26279000 14562000 25832000 3465700 5427100 3584600 16116000 0 5611 195 4887 34423;34424;34425;34426;34427;34428;34429 22124;22125;22126;22127;22128;22129;22130 22125 7 LLSISGK Unmodified 716.44324 0.44324019 1562 P06748-2;P06748;A4ZU86;P06748-3;Q9BTI9;E5RI98;Q9NX34;V9HVU7;A0A024RAP1 NPM1;CLEC2D Nucleophosmin yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 37.542 37.887 2 0.011563 11109 20181213_JW_Orientia_Karp_2_1 119.56 0 286250000 72659000 71696000 43847000 16749000 30160000 15171000 15365000 20604000 5612 1562 4888 34430;34431;34432;34433;34434;34435;34436;34437 22131;22132;22133;22134 22132 4 LLSSSNLNPSATPK Unmodified 1427.762 0.76200815 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 2 1 3 42.106 42.395 2 2.7537E-08 13675 20181213_JW_Orientia_Karp_2_3 193.15 116.98 5246900000 1211400000 692270000 1344400000 6877100 342780000 205210000 1215400000 228640000 5613 1166 4889 34438;34439;34440;34441;34442;34443;34444;34445;34446;34447;34448;34449;34450;34451;34452;34453;34454;34455 22135;22136;22137;22138;22139;22140;22141;22142;22143;22144 22141 10 LLSSSNLNPSATPK Deamidation (NQ) 1428.746 0.74602373 1166 Karp_00620 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.603 45.924 2 2.9902E-11 14444 20181213_JW_Orientia_Karp_3_2 196.16 126.1 135530000 25254000 28193000 28504000 10356000 7897500 3656900 6376400 25290000 5614 1166 4889 34456;34457;34458;34459;34460;34461;34462;34463 22145;22146;22147;22148;22149;22150;22151;22152 22152 557;558 7 LLSTELQAELSR Unmodified 1358.7405 0.74054442 1907 Q8N129 CNPY4 Protein canopy homolog 4 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 54.93 55.287 2 0.0058747 20427 20181213_JW_Orientia_Karp_2_1 105.36 58.902 35245000 3570200 5403100 7651000 6518900 7449800 3794400 494390 363300 5615 1907 4890 34464;34465;34466;34467;34468;34469;34470;34471 22153;22154 22153 2 LLSTSSQATLADR Unmodified 1361.7151 0.71505795 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.074 40.394 2 4.262E-34 13047 20181213_JW_Orientia_Karp_1_2 241.31 180.48 544390000 133290000 75903000 121350000 56134000 36248000 16874000 90243000 14342000 5616 1133 4891 34472;34473;34474;34475;34476;34477;34478;34479 22155;22156;22157;22158;22159;22160;22161;22162;22163 22156 9 LLSVEGSTLR Unmodified 1073.6081 0.60807369 1488 O00159;D3DTH7;F5H6E2;B7Z3E5;O00159-2;O00159-3;B7Z9C0 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 45.695 45.944 2 0.00039399 16575 20181213_JW_Orientia_Karp_1_1 145.72 46.585 58228000 22271000 18106000 15915000 944300 0 991780 0 0 5617 1488 4892 34480;34481;34482;34483;34484 22164;22165 22164 2 LLTEDIYQPR Unmodified 1246.6558 0.65575216 786 CON__ENSEMBL:ENSBTAP00000024146 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 50.662 51.166 2 0.0036393 17436 20181213_JW_Orientia_Karp_3_1 107.15 44.331 8615300 0 0 0 0 0 3324000 4780000 511400 + 5618 786 4893 34485;34486;34487 22166;22167 22166 2 LLTQHENIK Unmodified 1094.6084 0.60840804 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 24.681 24.974 3 0.0074556 5721 20181213_JW_Orientia_Karp_1_3 83.998 32.049 14725000 2302500 7381000 970570 1243700 1078300 0 1749200 0 5619 506 4894 34488;34489;34490;34491;34492;34493 22168;22169;22170;22171 22170 4 LLVFSEQK Unmodified 962.54368 0.54368251 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.335 47.68 2 2.5841E-05 16084 20181213_JW_Orientia_Karp_2_2 207.6 109.19 211180000 48615000 76300000 42306000 14527000 6820600 19860000 84088 2668900 5620 1458 4895 34494;34495;34496;34497;34498;34499;34500;34501 22172;22173;22174;22175;22176;22177;22178;22179 22176 8 LLVGSEDYGR Unmodified 1107.556 0.55603811 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16;Q14917 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 42.922 43.192 2 0.013841 15094 20181213_JW_Orientia_Karp_1_1 87.806 54.544 44879000 18565000 13143000 9811800 0 2187100 0 1172700 0 5621 316 4896 34502;34503;34504;34505;34506 22180 22180 1 LLVVTDPR Unmodified 911.54402 0.54401687 71;150 C9J9K3;A0A024R2P0;P08865;A6NE09;A0A024R7P5 RPSA;RPSAP58;LOC388524 40S ribosomal protein SA no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.496 45.726 2 0.01328 16458 20181213_JW_Orientia_Karp_1_1 98.523 46.736 168040000 41411000 81391000 39713000 1904000 3620300 0 0 0 5622 71;150 4897 34507;34508;34509;34510;34511 22181;22182;22183 22181 3 LLVVYPWTQR Unmodified 1273.7183 0.71829284 812;424 D5FZW3;E9M263;Q9BXA2;Q14484;A9YUX2;B5ANL9;Q9UP81;F8W6P5;Q8IZI0;Q8IUL9;Q3LR79;Q0Z944;B3VL31;Q9BWV6;Q9GZL9;B3VL86;D9YZU5;C8C504;Q14473;P68871;Q9UBV6;Q4TZM4;Q14477;E9PEW8;Q9BWU5;Q6V0K9;Q52MT0;E9NGZ5;B3VL05;Q6J1Z7;Q670S4;Q4F786;D1MGQ0;B2M1S8;E9PFT6;A0N071;P02042;Q9UM85;Q3L3Q5;A8MUF7;Q14476;B7UCU6;Q14474;Q9UK54;Q9UNL6;E9PBW4;E7CYP2;D9YZU9;D9YZU8;D9YZU7;D3GKD9;D3GKD8;Q14403;P69892;P69891;P02100;CON__Q3SX09;CON__P02070 HBB;HBD;beta-globin;HBE1;HBG2;HBG1 Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta;Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1;Hemoglobin subunit epsilon no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 64.035 64.251 2 0.00068929 24973 20181213_JW_Orientia_Karp_2_2 130.56 80.847 87806000 28404000 20452000 11011000 0 16815000 6371800 185510 4566600 + 5623 424;812 4898 34512;34513;34514;34515;34516;34517;34518 22184;22185;22186;22187;22188;22189 22187 6 LLVYEALEYAK Unmodified 1310.7122 0.71220441 869 H0YB83;E5RH53;Q96DB5-3;Q96DB5-2;Q96DB5;H0YB03 RMDN1 Regulator of microtubule dynamics protein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 62.985 63.207 2 0.010981 27694 20181213_JW_Orientia_Karp_1_1 94.297 48.138 11650000 3336700 0 2160200 0 2815800 2366900 0 970250 5624 869 4899 34519;34520;34521;34522;34523 22190;22191 22190 2 LLYAIPPLVASTAMK Oxidation (M) 1602.9055 0.90550126 1336 Karp_01409 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 1 1 2 1 2 68.506 68.703 2;3 4.1739E-06 30757 20181213_JW_Orientia_Karp_1_2 168.61 123.33 201470000 39026000 29387000 46875000 8245900 17143000 15057000 28922000 16810000 5625 1336 4900 34524;34525;34526;34527;34528;34529;34530;34531;34532;34533;34534;34535;34536 22192;22193;22194 22192 898 3 LLYAIPPLVASTAMK Unmodified 1586.9106 0.91058664 1336 Karp_01409 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 72.138 72.232 2 0.012761 33164 20181213_JW_Orientia_Karp_1_2 92.866 63.333 175820000 59865000 33452000 34422000 7894000 9429200 3044000 22501000 5210300 5626 1336 4900 34537;34538;34539;34540;34541;34542;34543;34544 22195 22195 1 LLYMSQQQIK Oxidation (M) 1266.6642 0.66420836 1396 Karp_02152 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 1 38.18 38.505 2 0.00014199 12570 20181213_JW_Orientia_Karp_1_1 146.23 82.805 204840000 50604000 43581000 62163000 13463000 9254300 0 25776000 0 5627 1396 4901 34545;34546;34547;34548;34549;34550;34551;34552 22196;22197;22198;22199;22200;22201 22196 996 6 LLYMSQQQIK Unmodified 1250.6693 0.66929373 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 45.415 45.705 2 6.1148E-06 15901 20181213_JW_Orientia_Karp_1_3 169.09 96.948 420330000 100520000 130070000 127880000 11874000 21107000 16956000 0 11926000 5628 1396 4901 34553;34554;34555;34556;34557;34558;34559;34560;34561;34562 22202;22203;22204;22205;22206;22207;22208;22209 22204 8 LLYNNVSNFGR Unmodified 1295.6622 0.66223452 1757 Q00610-2;Q00610;J3KS13 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 49.369 49.755 2 0.027598 16556 20181213_JW_Orientia_Karp_3_2 80.916 44.582 81154000 0 32318000 40831000 0 0 0 0 8005400 5629 1757 4902 34563;34564;34565 22210 22210 1 LMAENSVR Oxidation (M) 934.45422 0.45421558 1458 Karp_02603 yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 22.833 23.225 2 0.015567 4880 20181213_JW_Orientia_Karp_3_1 89.752 25.185 4644800 1069400 0 0 1192000 899760 0 1017400 466210 5630 1458 4903 34566;34567;34568;34569;34570 22211;22212 22212 1076 2 LMATQMTAAGLGPGVEQTK 2 Oxidation (M) 1934.9441 0.94414797 34 M0R3C7;Q4LE61;B7Z6F7;A0A024R0R6;Q92797-2;Q92797 SYMPK;SYMPK variant protein Symplekin yes no 0 0 2 0 By MS/MS By matching 1 1 74.808 74.862 2 0.010219 34560 20181213_JW_Orientia_Karp_1_3 82.85 10.755 238510000 0 0 236500000 0 0 0 0 2006600 5631 34 4904 34571;34572 22213 22213 18;19 1 LMCGGVEIRTIYAAHK Unmodified 1817.928 0.92804439 751 C9JW66;Q05CZ1;B9EGN3;C9JFZ1;J3KPK1;J3KQV8;O43426-5;O43426-4;O43426-2;O43426 SYNJ1 Synaptojanin-1 yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 60.048 60.368 3 0.036485 25923 20181213_JW_Orientia_Karp_1_1 73.022 4.0785 857630000 84864000 53214000 134720000 51264000 225150000 304180000 3636800 608580 5632 751 4905 34573;34574;34575;34576;34577;34578;34579;34580 22214 22214 1 LMCGGVEIRTIYAAHK Oxidation (M) 1833.923 0.92295901 751 C9JW66;Q05CZ1;B9EGN3;C9JFZ1;J3KPK1;J3KQV8;O43426-5;O43426-4;O43426-2;O43426 SYNJ1 Synaptojanin-1 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 58.548 58.923 3 0.0074613 22340 20181213_JW_Orientia_Karp_2_2 105.03 40.716 149870000 0 0 0 33939000 44276000 71433000 221980 0 5633 751 4905 34581;34582;34583;34584 22215;22216;22217 22216 442 3 LMDQNLK Oxidation (M) 876.4375 0.43750288 494 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-3;P06753-6;Q5VU61;J3KN67;Q8NAG3;B4DWT5;M1VPF4;B4DQ80;Q8NI98;A0A024R4K5;Q6LDX7 DKFZp686J1372;TPM3;TPM3-ROS1;OK/SW-cl.5;hCG_1787567 Tropomyosin alpha-3 chain;Tyrosine-protein kinase receptor yes no 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 22.868 23.213 2 0.021198 5303 20181213_JW_Orientia_Karp_1_1 95.352 8.8402 22516000 3295000 3339800 1943000 0 5385500 4724200 618680 3209600 5634 494 4906 34585;34586;34587;34588;34589;34590;34591 22218 22218 315 1 LMDVGLIAIR Oxidation (M) 1115.6373 0.63726532 377 V9HW72;A8K690;P31948;P31948-2;P31948-3 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 58.041 58.406 2 0.0077976 22332 20181213_JW_Orientia_Karp_2_3 122.13 44.461 0 0 0 0 0 0 0 0 0 5635 377 4907 34592;34593;34594;34595 22219;22220;22221;22222 22221 267 4 LMEDLDR Oxidation (M) 906.41168 0.41168206 1561 R4GN98;P06703;B2R577 S100A6 Protein S100;Protein S100-A6 yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 29.865 30.276 2 0.011677 6951 20181213_JW_Orientia_Karp_3_2 113.89 12.605 390020000 85010000 0 71776000 96258000 54751000 0 57421000 24805000 5636 1561 4908 34596;34597;34598;34599;34600;34601 22223;22224;22225;22226 22226 1177 4 LMEDLDR Unmodified 890.41677 0.41676744 1561 R4GN98;P06703;B2R577 S100A6 Protein S100;Protein S100-A6 yes no 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 39.107 39.466 2 0.03723 11986 20181213_JW_Orientia_Karp_2_1 84.916 8.1414 256910000 0 79346000 70577000 60328000 20860000 3151500 22645000 0 5637 1561 4908 34602;34603;34604;34605;34606;34607 22227;22228 22227 2 LMELHGEGSSSGK Oxidation (M) 1346.6136 0.61362935 363 H0Y9Y4;D6RG13;Q6NXR8;A8K4W0;P61247;D6R9B6;D6RAT0 RPS3A 40S ribosomal protein S3a yes no 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 20.489 20.753 3 0.0048178 4265 20181213_JW_Orientia_Karp_1_1 106.79 73.746 35065000 8531200 10209000 7806800 2471200 1324700 1422400 3299900 0 5638 363 4909 34608;34609;34610;34611;34612;34613;34614 22229;22230 22229 252 2 LMELPYSK Oxidation (M) 995.49977 0.49976879 1415 Karp_02252 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.805 40.135 2 0.0032474 12020 20181213_JW_Orientia_Karp_3_2 151.04 61.666 1234700000 226800000 346560000 216930000 154890000 63101000 0 201120000 25296000 5639 1415 4910 34615;34616;34617;34618;34619;34620;34621 22231;22232;22233;22234;22235;22236;22237 22237 1020 7 LMELPYSK Unmodified 979.50485 0.50485417 1415 Karp_02252 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 48.93 49.231 2 0.0053341 18000 20181213_JW_Orientia_Karp_1_3 118.74 44.768 495210000 141820000 139560000 80033000 67630000 23553000 30398000 0 12214000 5640 1415 4910 34622;34623;34624;34625;34626;34627;34628 22238;22239;22240;22241;22242;22243 22240 6 LMEPIYLVEIQCPEQVVGGIYGVLNR Oxidation (M) 3004.5402 0.5402004 1593 P13639;Q8TA90;B4DPU3 EEF2 Elongation factor 2 yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 76.017 75.999 3 0.030344 35318 20181213_JW_Orientia_Karp_1_3 51.232 31.74 23223000 7082600 0 10494000 0 0 0 5646700 0 5641 1593 4911 34629;34630;34631 22244 22244 1 LMEQLANIAMRQLLDNEGFEQDRSLPK 2 Oxidation (M);3 Deamidation (NQ) 3193.5271 0.52712911 1882 Q6ZT07 TBC1D9 TBC1 domain family member 9 yes yes 0 3 2 2 By matching By MS/MS By matching By matching 1 1 1 1 56.236 56.549 3 0.024798 21290 20181213_JW_Orientia_Karp_2_1 41.763 18.784 116750000 0 0 27918000 36583000 30111000 22133000 0 0 5642 1882 4912 34632;34633;34634;34635 22245 22245 1189;2024;2025 1484;1485 1 LMHAINDSLPIIR Oxidation (M) 1507.8181 0.81808324 1367 Karp_01877 yes yes 0 0 1 0 By MS/MS 1 48.286 48.835 3 0.038144 16798 20181213_JW_Orientia_Karp_2_1 69.352 19.996 3362200 0 0 0 3362200 0 0 0 0 5643 1367 4913 34636 22246 22246 1 LMIISTGCQGEPLAAVNK Oxidation (M) 1916.97 0.96996879 1320 Karp_01282 yes yes 0 0 1 0 By MS/MS 1 55.827 56.177 2 0.015486 22823 20181213_JW_Orientia_Karp_1_2 82.55 30.709 9922400 0 9922400 0 0 0 0 0 0 5644 1320 4914 34637 22247 22247 882 1 LMLLLEINK Oxidation (M) 1101.6468 0.64676738 489 Q5JTQ9;B3KMX6;B2RBI4;Q9UBT7-3;Q9UBT7-2;Q9UBT7 CTNNAL1 Alpha-catulin yes no 0 0 1 0 By MS/MS By MS/MS 1 1 44.182 44.532 2 0.010145 14937 20181213_JW_Orientia_Karp_2_3 89.752 19.754 8580200 0 0 0 4265300 0 4314900 0 0 5645 489 4915 34638;34639 22248;22249 22249 313 2 LMLLLEVISGER Oxidation (M) 1387.7745 0.77448709 1509;133 O43707;B4E337;B4DSX0;B3W6H4;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;Q86TX4;G3V2N5;B4DRP5;P35609-2;P35609;B2R8Y4;Q08043;B7Z4V1;B4DZQ2;G3V5M4 ACTN4;MLL-ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 0 0 1 0 By MS/MS By matching 1 1 72.098 72.277 2 0.0011593 26535 20181213_JW_Orientia_Karp_3_1 129.16 54.212 11341000 0 0 0 0 0 0 9553300 1787400 5646 1509;133 4916 34640;34641 22250 22250 117 1 LMMEHFEKLIFLK 2 Oxidation (M) 1709.8885 0.88847099 1517 O75132 ZBED4 Zinc finger BED domain-containing protein 4 yes yes 0 0 2 1 By MS/MS 1 61.498 61.947 2 0.017105 24106 20181213_JW_Orientia_Karp_2_1 55.721 14.641 1002100 0 0 0 1002100 0 0 0 0 5647 1517 4917 34642 22251 22251 1124;1125 0 LMNIQQQLMKTNLK Oxidation (M);2 Deamidation (NQ) 1719.8899 0.88992755 980 H0YK84;H0YK18;H0YMW2;Q12802-4;Q12802;Q12802-2 AKAP13 A-kinase anchor protein 13 yes no 0 2 1 1 By MS/MS By matching 1 1 61.243 61.418 3 0.024257 26617 20181213_JW_Orientia_Karp_1_1 71.241 14.369 201260000 117400000 83859000 0 0 0 0 0 0 5648 980 4918 34643;34644 22252 22252 1745;1746 542 1 LMQGDQILMVNGEDVR 2 Oxidation (M);3 Deamidation (NQ) 1851.823 0.82302978 273 A0A075B6R8;B3KRN5;B4DGX5;B7ZB24;B4DH86;H0YGQ3;F5H1U9;O75970-5;O75970-3;O75970-2;O75970 MPDZ Multiple PDZ domain protein yes no 0 3 2 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 68.142 68.35 2 0.005864 30663 20181213_JW_Orientia_Karp_1_1 83.045 19.351 124210000 16213000 18111000 28446000 5302500 23918000 8606400 10873000 12741000 5649 273 4919 34645;34646;34647;34648;34649;34650;34651;34652 22253;22254 22253 101;1355;1356 192;193 2 LMQVFYQQSTEFLSR Unmodified 1875.9189 0.91891949 1063 Karp_00007 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 66.047 66.147 2 6.9748E-05 29118 20181213_JW_Orientia_Karp_1_2 154.1 106.06 16612000 8649000 6244700 0 0 0 1718600 0 0 5650 1063 4920 34653;34654;34655 22255;22256 22256 2 LMSQALR Oxidation (M) 833.44292 0.44292261 1245 Karp_00915 yes yes 0 0 1 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 24.43 24.782 2 0.014029 5256 20181213_JW_Orientia_Karp_2_1 108.09 6.4868 52496000 9531100 13902000 0 5050600 6155400 3498100 10618000 3740900 5651 1245 4921 34656;34657;34658;34659;34660;34661;34662 22257 22257 806 1 LMTDTINEPILLCR Oxidation (M) 1703.8586 0.85862742 1510 O43776;B4DN60 NARS Asparagine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 59.672 60.059 2 0.00067028 25142 20181213_JW_Orientia_Karp_1_3 139.76 81.588 15026000 0 4608500 6537600 1545700 0 0 2334100 0 5652 1510 4922 34663;34664;34665;34666 22258;22259 22259 1120 2 LMTTLAPR Oxidation (M) 917.50044 0.50043749 1218 Karp_00885 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 2 1 35.215 35.551 2 0.0034933 9348 20181213_JW_Orientia_Karp_2_2 139.31 62.467 231760000 72826000 47772000 44645000 6692300 15127000 4396700 40305000 0 5653 1218 4923 34667;34668;34669;34670;34671;34672;34673;34674;34675;34676;34677;34678 22260;22261;22262;22263;22264;22265;22266 22263 778 7 LMTTLAPR Unmodified 901.50552 0.50552287 1218 Karp_00885 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 41.231 41.531 2 0.0059101 13728 20181213_JW_Orientia_Karp_1_2 116.9 60.782 116660000 47084000 27282000 28228000 2406500 1425900 0 10233000 0 5654 1218 4923 34679;34680;34681;34682;34683;34684 22267;22268;22269;22270;22271;22272 22268 6 LMVALAK Oxidation (M) 760.4517 0.45169638 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YM50;H0YKS4;H0YNP5;B3KRQ1;H0YN28;H0YL33;H0YNA0;H0YN52 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 2 2 2 38.094 38.439 2 0.019727 11346 20181213_JW_Orientia_Karp_2_1 97.64 46.674 534750000 96831000 201940000 149970000 20896000 44451000 0 20655000 0 5655 124 4924 34685;34686;34687;34688;34689;34690;34691;34692;34693;34694;34695 22273;22274;22275;22276;22277;22278 22276 108 6 LMVALAK Unmodified 744.45678 0.45678176 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YM50;H0YKS4;H0YNP5;B3KRQ1;H0YN28;H0YL33;H0YNA0;H0YN52 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 43.359 43.629 2 0.016965 14133 20181213_JW_Orientia_Karp_2_1 120.76 63.303 335960000 125620000 96731000 103840000 0 2198200 0 7564200 0 5656 124 4924 34696;34697;34698;34699;34700;34701 22279;22280;22281;22282;22283;22284 22282 6 LMYVNAPSSR Oxidation (M) 1152.5597 0.55974328 1228 Karp_00895 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 36.171 36.482 2 2.3513E-05 10363 20181213_JW_Orientia_Karp_2_1 160.36 90.363 694230000 230340000 169350000 150250000 41264000 43385000 15214000 44426000 0 5657 1228 4925 34702;34703;34704;34705;34706;34707;34708;34709;34710 22285;22286;22287;22288;22289;22290;22291 22288 792 7 LMYVNAPSSR Unmodified 1136.5648 0.56482866 1228 Karp_00895 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 41.442 41.762 2 0.0017683 14312 20181213_JW_Orientia_Karp_1_1 116.52 65.552 620960000 188330000 124580000 199900000 32578000 10059000 10916000 51291000 3312000 5658 1228 4925 34711;34712;34713;34714;34715;34716;34717;34718;34719 22292;22293;22294;22295;22296;22297;22298 22292 7 LMYVNAPSSR Oxidation (M);Deamidation (NQ) 1153.5438 0.54375887 1228 Karp_00895 yes yes 0 1 1 0 By matching By MS/MS By matching 1 1 1 37.578 38.045 2 0.038067 11186 20181213_JW_Orientia_Karp_2_1 64.654 26.926 6281600 0 0 3120700 724120 0 0 2436800 0 5659 1228 4925 34720;34721;34722 22299 22299 792 0 LNANVTIETK Acetyl (Protein N-term);2 Deamidation (NQ) 1145.5816 0.58158416 1078 Karp_02489;Karp_02175;Karp_01493;Karp_01433;Karp_00532;Karp_00094;Karp_02461;Karp_02355;Karp_01961;Karp_01906;Karp_01735;Karp_01706;Karp_01681;Karp_01547;Karp_00987;Karp_00969;Karp_00777;Karp_00484 yes no 1 2 0 0 By MS/MS 1 63.659 64.069 2 0.031604 24174 20181213_JW_Orientia_Karp_3_2 53.968 20.046 224740 0 0 0 0 0 0 0 224740 5660 1078 4926 34723 22300 22300 428;429 0 LNASYISSEGSK Unmodified 1254.6092 0.6091959 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 35.679 35.963 2 4.3392E-18 10833 20181213_JW_Orientia_Karp_1_2 225.55 158.59 74539000 20594000 13422000 26582000 0 6123000 2326900 5490700 0 5661 1376 4927 34724;34725;34726;34727;34728;34729 22301;22302;22303 22302 3 LNDLEDALQQAK Unmodified 1356.6885 0.68850885 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.947 52.293 2 5.4106E-40 20601 20181213_JW_Orientia_Karp_1_1 279.9 197.95 1975400000 437590000 295430000 315600000 340860000 227940000 267640000 80236000 10110000 + 5662 995;996 4928 34730;34731;34732;34733;34734;34735;34736;34737 22304;22305;22306;22307;22308;22309;22310;22311;22312 22304 9 LNDLEDALQQAK Deamidation (NQ) 1357.6725 0.67252444 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 3 4 3 1 2 56.599 56.906 2 4.7623E-11 22759 20181213_JW_Orientia_Karp_1_1 203.03 114 487330000 145860000 125960000 81080000 18040000 50287000 16873000 37510000 11723000 + 5663 995;996 4928 34738;34739;34740;34741;34742;34743;34744;34745;34746;34747;34748;34749;34750;34751;34752;34753;34754;34755;34756;34757;34758;34759;34760 22313;22314;22315;22316;22317;22318;22319;22320;22321;22322;22323 22313 354 11 LNDLEEALQQAK Deamidation (NQ) 1371.6882 0.6881745 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 57.203 57.564 2 0.010796 23472 20181213_JW_Orientia_Karp_1_3 105.25 42.068 18338000 0 0 9390700 1517000 3771300 3279300 379870 0 + 5664 804;1657 4929 34761;34762;34763;34764;34765 22324 22324 295 1 LNDLEEALQQAK Unmodified 1370.7042 0.70415892 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.717 53.062 2 2.4327E-07 19135 20181213_JW_Orientia_Karp_2_1 222.18 155.22 375380000 57190000 83394000 69997000 38497000 50264000 41902000 26321000 7818400 + 5665 804;1657 4929 34766;34767;34768;34769;34770;34771;34772;34773 22325 22325 1 LNDLNNDNSSK Unmodified 1232.5633 0.56330834 1061 Karp_00005 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 22.749 23.049 2 0.0026801 4938 20181213_JW_Orientia_Karp_1_2 115 58.089 4117900 0 1628600 744610 550430 0 556850 637350 0 5666 1061 4930 34774;34775;34776;34777;34778 22326;22327 22326 2 LNEAAAGLNQAATELVQASR Unmodified 2026.0443 0.044331016 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 61.239 61.606 3 1.8593E-12 25948 20181213_JW_Orientia_Karp_1_3 177.41 137.06 16617000 0 3209400 12795000 0 0 0 612510 0 5667 2016 4931 34779;34780;34781 22328 22328 1 LNEAMLNK Oxidation (M) 947.47462 0.47461667 1170 Karp_00624 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 26.943 27.283 2 0.0035048 7109 20181213_JW_Orientia_Karp_1_1 136.75 63.136 27216000 4751400 17910000 0 1324400 1427200 0 1803200 0 5668 1170 4932 34782;34783;34784;34785;34786 22329;22330 22329 716 2 LNEAQPSTIATSMR Oxidation (M) 1533.7457 0.74570615 1713 P56537-2;P56537 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 36.106 36.396 2 0.0014397 10642 20181213_JW_Orientia_Karp_3_1 128.21 72.813 42324000 14817000 13479000 7635300 0 672650 0 5719200 0 5669 1713 4933 34787;34788;34789;34790;34791 22331;22332;22333;22334 22334 1336 4 LNEGVVEFASYGDLK Unmodified 1639.8094 0.80935227 136 A0A024R6D8;Q59EK7;Q13243;Q13243-3;Q86U32 SFRS5;SRSF5 Serine/arginine-rich splicing factor 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.9 61.227 2 1.5278E-27 23821 20181213_JW_Orientia_Karp_2_1 233.52 169.42 62724000 17593000 0 12822000 6668200 15029000 0 4199400 6412000 5670 136 4934 34792;34793;34794;34795;34796;34797;34798 22335;22336;22337;22338;22339;22340;22341;22342;22343 22338 9 LNELEIR Unmodified 885.49198 0.4919813 1313 Karp_01265 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 41.017 41.418 2 0.01153 13055 20181213_JW_Orientia_Karp_3_1 119.17 0 21388000 0 11875000 0 1773500 2793000 0 4946800 0 5671 1313 4935 34799;34800;34801;34802 22344 22344 1 LNEQASEEILK Unmodified 1272.6561 0.65614609 162 B2RCX0;A0A024R895;Q5VXV3;Q01105-3;Q01105-4;Q01105-2;Q01105 SET Protein SET yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 41.651 41.971 2 0.00042401 13956 20181213_JW_Orientia_Karp_1_2 144.55 43.09 120820000 24598000 23352000 24456000 10171000 11680000 4342900 18924000 3297200 5672 162 4936 34803;34804;34805;34806;34807;34808;34809;34810 22345;22346;22347;22348;22349;22350;22351 22346 7 LNFAVASR Unmodified 876.48175 0.48175096 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 42.642 42.942 2 0.018186 14483 20181213_JW_Orientia_Karp_1_2 90.601 35.836 45602000 21697000 15061000 6467700 0 0 0 2375700 0 5673 516 4937 34811;34812;34813;34814 22352;22353;22354 22353 3 LNFSHGTHEYHAETIK Unmodified 1882.8962 0.89621022 1597 V9HWB8;P14618;A0A024R5Z9;P14618-2;H3BTN5;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 1 28.629 28.969 3;4 0.02707 7552 20181213_JW_Orientia_Karp_1_2 55.975 33.761 299900000 62341000 72506000 50738000 31268000 24134000 17110000 27950000 13853000 5674 1597 4938 34815;34816;34817;34818;34819;34820;34821;34822;34823;34824;34825;34826;34827;34828 22355;22356;22357;22358;22359;22360;22361;22362 22357 8 LNGAGLDKALK Deamidation (NQ) 1099.6237 0.62372375 1880 Q6ZSP3 Phospholipid-transporting ATPase yes yes 0 1 0 1 By MS/MS By matching By matching 1 1 1 32.67 32.853 3 0.0057622 9717 20181213_JW_Orientia_Karp_1_1 112.11 8.7954 14258000 6049100 5909000 2300000 0 0 0 0 0 5675 1880 4939 34829;34830;34831 22363 22363 1188 1 LNGTDPEDVIR Deamidation (NQ) 1228.5935 0.59354583 1831;1498;1626 O14950;Q71U02;Q6IBG1;P24844;Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12B;MYL9;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 3 3 2 1 1 49.203 49.533 2 0.00045955 16885 20181213_JW_Orientia_Karp_2_2 152.64 36.388 898640000 56759000 304210000 203800000 155990000 60577000 100280000 201030 16817000 5676 1498;1626;1831 4940 34832;34833;34834;34835;34836;34837;34838;34839;34840;34841;34842;34843;34844;34845;34846 22364;22365;22366;22367;22368;22369;22370;22371;22372;22373 22370 1010 9 LNIAPTIFAAR Unmodified 1185.687 0.68699271 1131 Karp_00376 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 61.645 61.873 2 0.00321 23868 20181213_JW_Orientia_Karp_2_2 143.5 95.928 0 0 0 0 0 0 0 0 0 5677 1131 4941 34847;34848;34849;34850 22374;22375;22376;22377 22375 4 LNIMAAK Oxidation (M) 775.42621 0.42620992 684 G3XAM7;B4E2G8;P35221;P35221-2;B4DKT9;B4DU00;E5RIB1;E5RJ41 CTNNA1 Catenin alpha-1 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 29.626 29.956 2 0.0095954 7828 20181213_JW_Orientia_Karp_1_3 119.22 61.41 11523000 3613200 2931300 2862400 0 624290 0 1492300 0 5678 684 4942 34851;34852;34853;34854;34855 22378;22379;22380;22381 22379 423 4 LNINQTQELYSQINR Unmodified 1832.9381 0.93807503 1390 Karp_02139 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 54.401 54.774 2 2.0016E-134 22304 20181213_JW_Orientia_Karp_1_1 341.16 168.55 546570000 90622000 221680000 114670000 56386000 52001000 0 306170 10903000 5679 1390 4943 34856;34857;34858;34859;34860;34861;34862 22382;22383;22384;22385;22386 22382 5 LNINQTQELYSQINR Deamidation (NQ) 1833.9221 0.92209062 1390 Karp_02139 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 56.979 57.256 2 9.0573E-05 23828 20181213_JW_Orientia_Karp_1_1 157.56 96.214 70470000 16011000 15718000 18938000 0 11361000 3558800 0 4883400 5680 1390 4943 34863;34864;34865;34866;34867;34868 22387;22388;22389 22387 878;1863 3 LNINQTQELYSQINRDDSQK Deamidation (NQ) 2407.1615 0.16154562 1390 Karp_02139 yes yes 0 1 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 49.552 49.903 3 0.035551 18586 20181213_JW_Orientia_Karp_1_2 73.918 34.271 50945000 0 19471000 11935000 6939600 4361300 4869500 0 3368700 5681 1390 4944 34869;34870;34871;34872;34873;34874 22390 22390 878;1863 1 LNIQPSEADYAVDIR Unmodified 1702.8526 0.85261407 408 A8KAK1;Q9NYU2-2;Q9NYU2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 57.09 57.273 2 0.010271 23613 20181213_JW_Orientia_Karp_1_2 96.756 57.49 25619000 8807100 8345400 8466100 0 0 0 0 0 5682 408 4945 34875;34876;34877 22391;22392 22392 2 LNISFPATGCQK Unmodified 1334.6653 0.66527099 285 Q96DV6;A2A3R6;P62753;A2A3R7 RPS6 40S ribosomal protein S6 yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 51.435 51.801 2 0.0061215 17884 20181213_JW_Orientia_Karp_3_1 104.43 49.712 62422000 17607000 24673000 0 4356600 3448500 3710800 6819800 1805800 5683 285 4946 34878;34879;34880;34881;34882;34883;34884 22393;22394 22393 2 LNIYGINATPQNVYTSGEIAR Unmodified 2293.1703 0.17025981 1261 Karp_01021 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 63.115 63.337 2 1.0347E-91 27659 20181213_JW_Orientia_Karp_1_1 299.56 239.95 58852000 23618000 0 23800000 0 6208800 4066800 0 1157900 5684 1261 4947 34885;34886;34887;34888;34889 22395;22396;22397;22398;22399 22395 4 LNIYGINATPQNVYTSGEIAR Deamidation (NQ) 2294.1543 0.1542754 1261 Karp_01021 yes yes 0 1 0 0 By MS/MS By MS/MS By matching 1 1 1 64.065 64.332 2 9.2756E-43 27465 20181213_JW_Orientia_Karp_1_2 236.03 168.08 16886000 5625400 10439000 0 0 0 0 821180 0 5685 1261 4947 34890;34891;34892 22400;22401 22401 1826 1 LNKPFLFDTK Unmodified 1221.6758 0.67575932 1637 P27824;P27824-2;P27824-3;Q16094;H0Y9Q7;D6RGY2;Q6ZP56;D6RFL1;D6RB85;D6RDP7;H0Y9H1 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.625 45.975 3 0.010939 16029 20181213_JW_Orientia_Karp_1_3 119.53 73.527 11985000 0 10253000 0 564510 0 1167800 0 0 5686 1637 4948 34893;34894;34895;34896;34897 22402;22403;22404 22404 3 LNLANMLNSK Oxidation (M) 1132.591 0.59104341 1066 Karp_00014 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 2 1 1 41.386 41.712 2 0.00021734 13618 20181213_JW_Orientia_Karp_1_3 142.98 103.68 69711000 0 0 8832300 1671600 13693000 34191000 8726800 2596100 5687 1066 4949 34898;34899;34900;34901;34902;34903;34904;34905;34906;34907 22405;22406;22407;22408;22409;22410 22407 585 6 LNLANMLNSK Deamidation (NQ) 1117.5801 0.58014438 1066 Karp_00014 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 1 56.634 56.847 2 0.0037999 21190 20181213_JW_Orientia_Karp_2_2 114.97 62.183 31081000 11166000 8031500 0 0 6197800 5685500 0 0 5688 1066 4949 34908;34909;34910;34911;34912;34913 22411;22412;22413;22414 22414 402 3 LNLANMLNSK Oxidation (M);Deamidation (NQ) 1133.5751 0.575059 1066 Karp_00014 yes yes 0 1 1 0 By matching By MS/MS By matching 1 1 1 43.851 44.137 2 0.0078866 15043 20181213_JW_Orientia_Karp_1_2 101.46 56.378 20579000 6593900 13738000 0 0 0 0 0 247230 5689 1066 4949 34914;34915;34916 22415 22415 402 585 1 LNLANMLNSK Unmodified 1116.5961 0.59612879 1066 Karp_00014 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.688 55.004 2 7.4564E-07 21809 20181213_JW_Orientia_Karp_1_3 189.18 126.46 149240000 43681000 46699000 30307000 5060200 9057700 14200000 0 230230 5690 1066 4949 34917;34918;34919;34920;34921;34922;34923 22416;22417;22418;22419 22416 4 LNLDVDLK Unmodified 928.52295 0.52294707 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 52.946 53.246 2 0.0012999 19240 20181213_JW_Orientia_Karp_2_1 176.6 52.914 98510000 35903000 0 6853200 18848000 15436000 20780000 690100 0 5691 1170 4950 34924;34925;34926;34927;34928;34929 22420;22421;22422;22423;22424 22422 5 LNLEAINYMAADGDFK Unmodified 1783.8451 0.84508585 1576 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.78 67.981 2 1.952E-10 27132 20181213_JW_Orientia_Karp_2_3 213.99 162.71 196020000 57412000 23094000 32372000 0 21530000 12249000 33395000 15966000 5692 1576 4951 34930;34931;34932;34933;34934;34935;34936 22425;22426;22427;22428;22429;22430;22431;22432 22429 8 LNLEAINYMAADGDFK Oxidation (M) 1799.84 0.84000047 1576 P09382 LGALS1 Galectin-1 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 60.998 61.318 2 1.712E-28 21352 20181213_JW_Orientia_Karp_3_1 238.88 149.71 296570000 59235000 43454000 61771000 25097000 46450000 29612000 9242400 21705000 5693 1576 4951 34937;34938;34939;34940;34941;34942;34943;34944 22433;22434;22435 22434 1200 3 LNLITGLIR Unmodified 1011.6441 0.64406526 1237 Karp_00904 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 63.719 63.895 2 0.00068468 25005 20181213_JW_Orientia_Karp_2_3 152.06 39.65 98620000 48353000 11352000 21285000 0 9002600 4755900 0 3871800 5694 1237 4952 34945;34946;34947;34948;34949;34950 22436;22437;22438;22439;22440;22441 22440 6 LNLITGLIR Deamidation (NQ) 1012.6281 0.62808085 1237 Karp_00904 yes yes 0 1 0 0 By MS/MS 1 68.918 69.067 2 0.019319 31036 20181213_JW_Orientia_Karp_1_2 99.815 6.3865 0 0 0 0 0 0 0 0 0 5695 1237 4952 34951 22442 22442 638 1 LNNELLAK Unmodified 913.52328 0.52328142 803 CON__P34955 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 36.744 37.185 2 0.016612 10956 20181213_JW_Orientia_Karp_3_1 93.143 26.714 27851000 0 0 0 0 6264800 3213100 13483000 4890000 + 5696 803 4953 34952;34953;34954;34955 22443 22443 1 LNNEPTNTEPIWTSLIK Unmodified 1969.0157 0.015656649 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 2 67.636 67.821 2;3 8.4491E-54 30455 20181213_JW_Orientia_Karp_1_1 261.45 195.75 176080000 42609000 41731000 40162000 0 14654000 8660600 16208000 12056000 5697 1166 4954 34956;34957;34958;34959;34960;34961;34962;34963;34964;34965;34966;34967 22444;22445;22446;22447;22448;22449;22450 22444 7 LNNEPTNTEPIWTSLIK Deamidation (NQ) 1969.9997 0.99967223 1166 Karp_00620 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 3 3 4 3 1 1 2 71.433 71.533 2;3 2.2338E-41 32274 20181213_JW_Orientia_Karp_1_2 243.49 175.36 280470000 78046000 85639000 64373000 0 14856000 3287900 19854000 14412000 5698 1166 4954 34968;34969;34970;34971;34972;34973;34974;34975;34976;34977;34978;34979;34980;34981;34982;34983;34984 22451;22452;22453;22454;22455;22456 22452 559;560 5 LNNLCDK Unmodified 875.4171 0.41710179 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 23.181 23.493 2 0.024832 5140 20181213_JW_Orientia_Karp_1_2 96.19 27.706 6402500 0 2606100 1153400 774830 0 0 1868100 0 5699 1178 4955 34985;34986;34987;34988 22457;22458 22457 2 LNNLVLFDK Deamidation (NQ) 1075.5914 0.59136099 1737 P62851 RPS25 40S ribosomal protein S25 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 1 1 61.063 61.29 2 0.0014263 23315 20181213_JW_Orientia_Karp_3_2 146.69 89.646 61383000 37496000 7913900 0 0 4388700 7161900 0 4422800 5700 1737 4956 34989;34990;34991;34992;34993;34994;34995;34996 22459;22460;22461;22462;22463;22464;22465 22464 1142;1143 7 LNPDITGIK Unmodified 969.5495 0.54949617 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 44.555 44.857 2 0.0068837 16029 20181213_JW_Orientia_Karp_1_1 100.25 46.088 150680000 59142000 48805000 24485000 0 6762200 2830700 8360200 294090 5701 1162 4957 34997;34998;34999;35000;35001;35002;35003 22466;22467 22466 2 LNPFGNTFLNR Unmodified 1291.6673 0.6673199 36 A0A024R0S6;Q9NZN4;B4DLA1;Q8NCJ3 EHD2 EH domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 59.817 59.992 2 0.00088087 25281 20181213_JW_Orientia_Karp_1_2 131.12 74.682 32770000 22891000 9879200 0 0 0 0 0 0 5702 36 4958 35004;35005;35006 22468;22469;22470 22469 3 LNQNLDVNK Unmodified 1056.5564 0.55637247 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 30.91 31.228 2 6.1622E-07 8901 20181213_JW_Orientia_Karp_1_1 209.58 143.02 247690000 77487000 58387000 56335000 0 5210700 4918800 45355000 0 5703 1251 4959 35007;35008;35009;35010;35011;35012;35013;35014 22471;22472;22473;22474;22475;22476 22471 6 LNRFPGNESK Unmodified 1160.5938 0.5938206 1175 Karp_00629 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 22.84 23.184 3 0.042584 4936 20181213_JW_Orientia_Karp_1_3 84.31 33.519 47212000 4592400 21345000 6605200 0 4346100 4501400 3347400 2474900 5704 1175 4960 35015;35016;35017;35018;35019;35020;35021 22477 22477 1 LNSELVLELQQK Unmodified 1412.7875 0.78749461 1365 Karp_01875 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.088 56.446 2 2.9507E-31 21211 20181213_JW_Orientia_Karp_2_3 254.19 159.78 65392000 18243000 12228000 15587000 4265700 8295800 5188800 610450 972480 5705 1365 4961 35022;35023;35024;35025;35026;35027;35028;35029 22478;22479;22480;22481;22482;22483;22484;22485;22486 22484 9 LNSGLGQLILK Unmodified 1154.7023 0.70230842 525 J3QSX6;Q5JVV3;B3KSG3;H0Y3K7;F8W8M4;Q5T6N4;O14639-4;O14639-3;O14639-5;Q5T6N2;O14639-2;B3KVH2;O14639;B4DQA3;B7Z4H1 ABLIM1 Actin-binding LIM protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 57.011 57.294 2 1.4154E-05 23667 20181213_JW_Orientia_Karp_1_2 172.59 76.779 37883000 7008400 11206000 6899100 0 5745700 6022700 1000800 0 5706 525 4962 35030;35031;35032;35033;35034;35035;35036 22487;22488;22489;22490;22491;22492;22493 22489 7 LNSGLGQLILK Deamidation (NQ) 1155.6863 0.68632401 525 J3QSX6;Q5JVV3;B3KSG3;H0Y3K7;F8W8M4;Q5T6N4;O14639-4;O14639-3;O14639-5;Q5T6N2;O14639-2;B3KVH2;O14639;B4DQA3;B7Z4H1 ABLIM1 Actin-binding LIM protein 1 yes no 0 1 0 0 By matching By MS/MS By MS/MS 1 1 1 64.243 64.573 2 0.02001 24580 20181213_JW_Orientia_Karp_3_2 94.363 29.942 1370200 0 766640 0 0 0 0 0 603600 5707 525 4962 35037;35038;35039 22494;22495 22495 193 2 LNSIFMMADSEAR Oxidation (M) 1499.6748 0.6748494 1169 Karp_00623 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 54.699 55.05 2 2.7039E-05 23327 20181213_JW_Orientia_Karp_1_3 174.21 133.33 142510000 40310000 31290000 40340000 9467200 7032700 7368400 4391300 2312000 5708 1169 4963 35040;35041;35042;35043;35044;35045;35046;35047;35048;35049;35050;35051;35052;35053;35054 22496;22497;22498;22499;22500;22501;22502;22503;22504 22500 708;709 9 LNSIFMMADSEAR 2 Oxidation (M) 1515.6698 0.66976402 1169 Karp_00623 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 48.125 48.615 2 0.00060362 16658 20181213_JW_Orientia_Karp_2_1 142.76 94.479 25827000 0 0 0 11226000 5471500 0 710080 8419200 5709 1169 4963 35055;35056;35057;35058;35059;35060 22505;22506;22507;22508 22507 708;709 4 LNTEMMETK 2 Oxidation (M) 1127.4839 0.48386073 1339 Karp_01469 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 19.687 19.954 2 0.0025083 3696 20181213_JW_Orientia_Karp_2_1 109.71 60.356 5587000 1205900 931800 1424800 909780 360900 0 753890 0 5710 1339 4964 35061;35062;35063;35064;35065;35066 22509;22510;22511;22512;22513 22512 902;903 5 LNTIILGVSK Unmodified 1056.6543 0.6542956 1260 Karp_01840;Karp_01007;Karp_01729 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 53.011 53.328 2 0.00048804 19348 20181213_JW_Orientia_Karp_2_2 134.84 56.074 8330500 0 0 0 2145100 1831300 4354100 0 0 5711 1260 4965 35067;35068;35069;35070;35071 22514;22515;22516;22517;22518 22517 5 LNTLFNLNGAK Deamidation (NQ) 1204.6452 0.64518747 1224 Karp_00891 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 2 2 1 58.644 58.938 2 4.8549E-13 23248 20181213_JW_Orientia_Karp_2_3 222.28 103.94 189280000 53895000 25794000 42641000 12371000 24297000 25149000 0 5131100 5712 1224 4966 35072;35073;35074;35075;35076;35077;35078;35079;35080;35081;35082;35083;35084;35085;35086 22519;22520;22521;22522;22523;22524;22525;22526;22527;22528;22529;22530 22529 629;630 11 LNTLFNLNGAK 2 Deamidation (NQ) 1205.6292 0.62920306 1224 Karp_00891 yes yes 0 2 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 64.292 64.523 2 0.0031469 25019 20181213_JW_Orientia_Karp_2_2 121.61 77.65 20154000 4286200 10486000 0 199240 3632500 0 0 1550500 5713 1224 4966 35087;35088;35089;35090;35091;35092 22531;22532;22533 22533 629;630 3 LNTLLQR Unmodified 856.51305 0.51305109 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 38.665 38.94 2 0.012103 12871 20181213_JW_Orientia_Karp_1_1 125.81 28.341 61192000 32113000 0 22855000 0 0 1058900 5165700 0 5714 595 4967 35093;35094;35095;35096 22534 22534 1 LNTQEIFDDWAR Unmodified 1506.7103 0.71030693 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 65.337 65.506 2 0.0013456 28323 20181213_JW_Orientia_Karp_1_3 129.74 61.184 8150300 3930600 0 3700200 0 0 0 0 519510 5715 1796 4968 35097;35098;35099;35100 22535;22536 22536 2 LNVAPLAVFQMLK Oxidation (M);Deamidation (NQ) 1459.8109 0.81087259 743 H7BZ50;H7C173;H7C202;B8ZZ87;Q6P582;Q6NZ67 MZT2B;MZT2A Mitotic-spindle organizing protein 2A;Mitotic-spindle organizing protein 2B yes no 0 1 1 0 By MS/MS 2 71.461 71.671 2 0.0147 28751 20181213_JW_Orientia_Karp_3_2 103.55 10.368 0 0 0 0 0 0 0 0 0 5716 743 4969 35101;35102 22537;22538 22537 1626 437 2 LNVENDLTFQEALK Unmodified 1632.8359 0.83590137 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 60.402 60.729 2 3.2991E-105 25776 20181213_JW_Orientia_Karp_1_2 322.7 194.19 1527100000 243660000 382190000 474620000 0 177400000 136970000 33208000 79048000 5717 1375 4970 35103;35104;35105;35106;35107;35108;35109;35110;35111 22539;22540;22541;22542;22543;22544;22545;22546;22547;22548;22549;22550;22551;22552;22553;22554 22543 16 LNVENDLTFQEALK Deamidation (NQ) 1633.8199 0.81991695 1375 Karp_02111 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 2 3 3 63.15 63.414 2 6.1369E-124 26643 20181213_JW_Orientia_Karp_1_3 336.33 260.05 732010000 173630000 115400000 254330000 14699000 87055000 58012000 1009100 27890000 5718 1375 4970 35112;35113;35114;35115;35116;35117;35118;35119;35120;35121;35122;35123;35124;35125;35126;35127;35128;35129;35130;35131;35132 22555;22556;22557;22558;22559;22560;22561;22562;22563;22564;22565;22566 22560 862;863 12 LNVGAPDVTLR Unmodified 1153.6455 0.64552182 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 51.149 51.494 2 0.0012514 20103 20181213_JW_Orientia_Karp_1_1 125.72 68.161 357900000 87726000 95359000 62450000 41682000 22507000 35049000 12033000 1093400 5719 1782 4971 35133;35134;35135;35136;35137;35138;35139;35140 22567;22568;22569;22570;22571;22572;22573 22567 7 LNVIPIHVPSLAK Unmodified 1399.8551 0.85512067 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 58.28 58.562 3 0.0045687 20720 20181213_JW_Orientia_Karp_3_2 95.273 64.942 182420000 89480000 26185000 45315000 0 0 11091000 0 10352000 5720 1358 4972 35141;35142;35143;35144;35145 22574;22575;22576;22577;22578 22578 5 LNVTEQEK Unmodified 959.49238 0.49237523 93 A0A024R4F1;P06733;K7EM90;A4UCS8;L0R849 ENO1;EDARADD Alpha-enolase;Enolase yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 25.549 25.858 2 0.013321 6539 20181213_JW_Orientia_Karp_1_1 98.458 13.543 7878300 2804600 1195300 0 1168300 961300 441300 1307500 0 5721 93 4973 35146;35147;35148;35149;35150;35151 22579 22579 1 LNWNPSPSPVTGYK Unmodified 1558.778 0.77799256 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.352 52.697 2 0.0037781 18352 20181213_JW_Orientia_Karp_3_1 114.76 68.302 84897000 24990000 26650000 16886000 4037100 3381800 2402700 5539600 1010000 5722 852 4974 35152;35153;35154;35155;35156;35157;35158;35159 22580;22581;22582 22581 3 LNYKPPPQK Unmodified 1083.6077 0.60767975 205 H0YGX7;A0A024RAS5;P52566;F5H2R5;F5H6Q0;F5H3P3;B2R4F3 ARHGDIB Rho GDP-dissociation inhibitor 2 yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 23.871 24.204 3 0.014339 5769 20181213_JW_Orientia_Karp_1_1 98.458 51.271 26077000 2439300 7813400 1456600 1461400 1617600 3052200 5677800 2559000 5723 205 4975 35160;35161;35162;35163;35164;35165;35166;35167 22583 22583 1 LPACVVDCGTGYTK Unmodified 1539.7061 0.70614953 201 A0A024RAI1;P61158;F8WEW2;F8WE84 ACTR3 Actin-related protein 3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 44.466 44.818 2 1.7809E-07 15987 20181213_JW_Orientia_Karp_1_1 181.31 126.83 89269000 23791000 22400000 23239000 4916200 2255100 0 9939000 2728100 5724 201 4976 35168;35169;35170;35171;35172;35173;35174;35175 22584;22585;22586;22587 22584 4 LPASFDAR Unmodified 875.45012 0.45011648 77 B4DL49;A0A024R374;P07858;A8K2H4;E9PS78;E9PR54;E9PJ67;Q5HYG5;E9PCB3;E9PKQ7;E9PNL5;E9PHZ5;E9PLY3;E9PSG5;E9PQM1 CTSB;DKFZp686N0152 Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 39.236 39.503 2 0.042273 12488 20181213_JW_Orientia_Karp_1_3 75.738 20.234 153920000 44048000 59450000 26682000 0 8885700 2019600 12835000 0 5725 77 4977 35176;35177;35178;35179;35180;35181 22588;22589 22588 2 LPATEKPVLLSK Unmodified 1294.786 0.78603805 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;B7Z602;Q68D25 HYOU1;DKFZp686N08236 Hypoxia up-regulated protein 1 yes no 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 39.65 39.944 3 0.015909 11875 20181213_JW_Orientia_Karp_3_2 89.43 66.513 34844000 7408700 0 12922000 0 1625800 459080 11222000 1207800 5726 545 4978 35182;35183;35184;35185;35186;35187 22590 22590 1 LPAVEPTDQAQYLCR Unmodified 1759.8563 0.85631924 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 52.241 52.568 2 2.0213E-09 20599 20181213_JW_Orientia_Karp_1_2 193.49 153.87 222690000 54040000 58689000 67426000 0 14400000 0 27501000 628760 5727 195 4979 35188;35189;35190;35191;35192;35193 22591 22591 1 LPAVVTADLR Unmodified 1053.6182 0.61824444 385 M0QY67;P38117;A8K766;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 51.882 52.207 2 0.0017974 18687 20181213_JW_Orientia_Karp_2_1 116.37 10.804 15434000 0 6644600 0 4178600 1685300 2925700 0 0 5728 385 4980 35194;35195;35196;35197 22592;22593 22592 2 LPDDSYSLLK Unmodified 1149.5918 0.59175492 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 2 2 2 54.392 54.731 2 0.00095802 22299 20181213_JW_Orientia_Karp_1_2 125.16 10.647 360560000 115810000 19210000 109930000 30870000 25985000 57445000 0 1314200 5729 1428 4981 35198;35199;35200;35201;35202;35203;35204;35205;35206;35207;35208;35209 22594;22595;22596;22597;22598;22599 22595 6 LPDGYEFK Unmodified 967.4651 0.46509784 1576 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 45.209 45.509 2 0.0052141 15085 20181213_JW_Orientia_Karp_2_1 119.41 64.795 497030000 233560000 121880000 99167000 23580000 17899000 0 948580 0 5730 1576 4982 35210;35211;35212;35213;35214;35215 22600;22601;22602;22603 22602 4 LPDIFEAQIAGLR Unmodified 1441.7929 0.79291434 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.706 71.797 2 2.5042E-15 32891 20181213_JW_Orientia_Karp_1_1 227.36 149.26 295420000 0 63793000 79340000 15820000 33764000 18281000 84426000 0 + 5731 811 4983 35216;35217;35218;35219;35220;35221;35222 22604;22605;22606;22607;22608;22609;22610 22604 7 LPDNSYSLLK Unmodified 1148.6077 0.60773933 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS 1 50.384 50.994 2 0.030806 17282 20181213_JW_Orientia_Karp_3_2 77.533 34.669 587390 0 0 0 0 0 0 0 587390 5732 1428 4984 35223 22611 22611 1 LPEAVQLIEK Unmodified 1138.6598 0.65977491 1862 Q6FHY4;Q99747-2;Q99747;J3KTJ6 NAPG Gamma-soluble NSF attachment protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 53.954 54.274 2 0.00069672 21650 20181213_JW_Orientia_Karp_1_2 130.41 65.166 19819000 0 5327000 3808700 3751200 2508200 4423700 0 0 5733 1862 4985 35224;35225;35226;35227;35228 22612;22613;22614 22612 3 LPEDDEPPARPPPPPPASVSPQAEPVWTPPAPAPAAPPSTPAAPK Unmodified 4491.2751 0.27506582 946 Q53R94;Q6IPN0;F8W914;Q9NQC3-2;Q9NQC3-5;Q9NQC3 RTN4 Reticulon;Reticulon-4 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 63.825 64.001 4 0.016235 27396 20181213_JW_Orientia_Karp_1_3 33.833 21.423 215510000 65871000 58469000 64406000 0 11534000 13097000 0 2133000 5734 946 4986 35229;35230;35231;35232;35233;35234 22615;22616;22617;22618;22619;22620 22618 5 LPEDDEPPARPPPPPPASVSPQAEPVWTPPAPAPAAPPSTPAAPK Deamidation (NQ) 4492.2591 0.2590814 946 Q53R94;Q6IPN0;F8W914;Q9NQC3-2;Q9NQC3-5;Q9NQC3 RTN4 Reticulon;Reticulon-4 yes no 0 1 0 1 By matching By MS/MS 1 1 63.733 63.858 3 0.013695 27777 20181213_JW_Orientia_Karp_1_2 48.08 35.847 17662000 6463000 11199000 0 0 0 0 0 0 5735 946 4986 35235;35236 22621 22621 1726 1 LPEEIIITSVQTHQK Unmodified 1734.9516 0.95159983 1370 Karp_01999 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 50.104 50.353 3 2.7789E-05 18981 20181213_JW_Orientia_Karp_1_2 153.14 125.17 102820000 26634000 37902000 19730000 13451000 5104700 0 0 0 5736 1370 4987 35237;35238;35239;35240;35241 22622;22623;22624;22625;22626 22624 5 LPEEMGLLQGSSGDK Oxidation (M) 1575.745 0.74503745 79 B2R642;A0A024R3I5;P43121;A8K6A6 MCAM Cell surface glycoprotein MUC18 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.389 45.733 2 2.1345E-09 16408 20181213_JW_Orientia_Karp_1_1 193 155.4 108860000 26353000 24814000 32321000 7316900 0 6953600 3741100 7360700 5737 79 4988 35242;35243;35244;35245;35246;35247;35248 22627;22628;22629;22630;22631;22632;22633 22627 83 7 LPEEMGLLQGSSGDK Unmodified 1559.7501 0.75012283 79 B2R642;A0A024R3I5;P43121;A8K6A6 MCAM Cell surface glycoprotein MUC18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.984 54.306 2 7.3031E-20 21371 20181213_JW_Orientia_Karp_1_3 222.81 169.22 126390000 56984000 17357000 32490000 5148100 8521500 5375100 512820 0 5738 79 4988 35249;35250;35251;35252;35253;35254;35255 22634;22635;22636;22637;22638;22639 22636 6 LPEEWSQWLGGSSWPGYVR Unmodified 2233.0593 0.059252799 1553 V9HW43;P04792;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 73.78 73.809 3 1.6488E-07 29818 20181213_JW_Orientia_Karp_2_2 165.66 124.28 131480000 57508000 21972000 14394000 0 26240000 0 11367000 0 5739 1553 4989 35256;35257;35258;35259;35260 22640;22641;22642 22642 3 LPEGDLGK Unmodified 827.43888 0.43888309 1018 I3L397;I3L504;P63241;P63241-2;Q6IS14 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 32.931 33.207 2 0.015134 8412 20181213_JW_Orientia_Karp_3_2 95.531 33.568 72759000 19644000 21196000 8708500 0 17072000 3278000 0 2859800 5740 1018 4990 35261;35262;35263;35264;35265;35266 22643;22644 22644 2 LPEGHVPEGAGLK Unmodified 1302.6932 0.6932003 1902 Q8IVF2-3;Q8IVF2 AHNAK2 Protein AHNAK2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 35.739 36.03 3 0.004226 10693 20181213_JW_Orientia_Karp_1_3 96.745 40.54 47490000 22994000 9889200 10121000 0 1450900 0 3035300 0 5741 1902 4991 35267;35268;35269;35270;35271 22645;22646;22647;22648 22647 4 LPEIYIQLQR Unmodified 1271.7238 0.72377215 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 60.973 61.26 2 0.00025032 26513 20181213_JW_Orientia_Karp_1_1 143.37 86.458 64155000 25205000 11696000 18883000 297300 2731500 2592000 0 2750000 5742 185 4992 35272;35273;35274;35275;35276;35277;35278 22649;22650;22651;22652;22653 22649 5 LPELAPTAPLPYPAPEASGPPAVAPR Unmodified 2578.3795 0.3795243 230 F5H4M0;A0A024RBU0;Q9H9H4 VPS37B Vacuolar protein sorting-associated protein 37B yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 71.013 71.133 3 0.00022682 25844 20181213_JW_Orientia_Karp_3_1 96.341 74.777 65582000 17485000 9989400 10086000 2595500 7265100 3311300 11091000 3759600 5743 230 4993 35279;35280;35281;35282;35283;35284;35285;35286 22654;22655;22656 22656 3 LPELFIDHTAGK Unmodified 1339.7136 0.71360139 1369 Karp_01981 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 50.488 50.748 3 0.00072379 19744 20181213_JW_Orientia_Karp_1_1 122.18 72.989 57572000 7051400 29758000 0 11586000 3259200 5916800 0 0 5744 1369 4994 35287;35288;35289;35290;35291 22657;22658;22659;22660;22661 22657 5 LPESDRNNITTIMNELQQAIK Oxidation (M);Deamidation (NQ) 2444.2217 0.22170303 1074 Karp_00050 yes yes 0 1 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 2 1 3 59.158 59.418 3 1.4303E-05 27187 20181213_JW_Orientia_Karp_1_2 147.84 109.78 323610000 74126000 61952000 106760000 4415100 38538000 19202000 8413700 10206000 5745 1074 4995 35292;35293;35294;35295;35296;35297;35298;35299;35300;35301;35302;35303;35304;35305;35306;35307;35308;35309;35310 22662;22663;22664;22665;22666;22667;22668;22669;22670;22671;22672 22664 417;418;419;1789 594 11 LPESDRNNITTIMNELQQAIK Oxidation (M) 2443.2377 0.23768745 1074 Karp_00050 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 1 60.628 60.936 3 2.8222E-16 22616 20181213_JW_Orientia_Karp_3_2 180.08 139.44 552070000 101450000 185900000 65931000 39710000 92933000 47116000 8576900 10463000 5746 1074 4995 35311;35312;35313;35314;35315;35316;35317;35318;35319;35320;35321;35322;35323;35324;35325 22673;22674;22675;22676;22677;22678;22679 22679 594 7 LPESDRNNITTIMNELQQAIK Unmodified 2427.2428 0.24277283 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.817 71.895 3 9.3954E-17 29273 20181213_JW_Orientia_Karp_2_1 186.74 142.69 808180000 189190000 209650000 64840000 36435000 86540000 35163000 186370000 0 5747 1074 4995 35326;35327;35328;35329;35330;35331;35332 22680;22681;22682;22683;22684;22685;22686 22683 7 LPESDRNNITTIMNELQQAIK Deamidation (NQ) 2428.2268 0.22678841 1074 Karp_00050 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 73.095 73.152 3 7.7053E-22 33675 20181213_JW_Orientia_Karp_1_3 202.94 132.83 670490000 110450000 0 134960000 8894800 88811000 0 213240000 114140000 5748 1074 4995 35333;35334;35335;35336;35337;35338;35339;35340;35341;35342 22687;22688;22689;22690;22691;22692 22688 417;418;419;1789 6 LPESDRNNITTIMNELQQAIK Oxidation (M);2 Deamidation (NQ) 2445.2057 0.20571862 1074 Karp_00050 yes yes 0 2 1 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.703 54.025 3 0.0096217 19744 20181213_JW_Orientia_Karp_2_1 91.926 58.09 72531000 22837000 7919000 17845000 9549000 8689600 4910600 780740 0 5749 1074 4995 35343;35344;35345;35346;35347;35348;35349 22693;22694;22695;22696 22694 417;418;419;1789 594 3 LPEVEVPQHL Unmodified 1159.6237 0.62372375 390 B4DZX0;Q53GX6;A8K7Q1;Q02818;B3KUR6;Q96BA4 NUCB1 Nucleobindin-1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 56.118 56.477 2 0.0011013 21161 20181213_JW_Orientia_Karp_2_1 122.28 65.234 83211000 22918000 0 11982000 20620000 14365000 13105000 69700 152030 5750 390 4996 35350;35351;35352;35353;35354;35355;35356 22697;22698;22699 22697 3 LPFAAAQIGNSFR Unmodified 1390.7357 0.73573382 1667 P41250;Q75MN1 GARS Glycine--tRNA ligase yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 59.314 59.717 2 0.010195 25238 20181213_JW_Orientia_Karp_1_2 98.754 61.69 26159000 0 13016000 11235000 0 0 0 96001 1811700 5751 1667 4997 35357;35358;35359;35360 22700 22700 1 LPFLLENTVVTVETYKDEPIR Unmodified 2475.3261 0.32609175 1436 Karp_02394 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.808 70.915 3 0.0034219 31902 20181213_JW_Orientia_Karp_1_3 98.804 70.479 141110000 38445000 28665000 17899000 2668000 13892000 8262600 31279000 0 5752 1436 4998 35361;35362;35363;35364;35365;35366;35367 22701;22702;22703;22704;22705;22706 22703 6 LPFPIIDDR Unmodified 1084.5917 0.59169534 1644 V9HWC7;P30041;A4UCS6 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 64.799 64.949 2 0.0039728 25601 20181213_JW_Orientia_Karp_2_3 109.11 44.845 33934000 15983000 0 5337400 167990 7759500 4685800 0 0 5753 1644 4999 35368;35369;35370;35371;35372 22707;22708;22709 22709 3 LPGDIQVVPIGVGPNANVQELER Unmodified 2413.2965 0.29652296 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 70.846 70.965 3 2.5208E-14 31971 20181213_JW_Orientia_Karp_1_3 165.9 138.58 45896000 14473000 11871000 6029400 737100 2636900 1802800 7115900 1230000 5754 1466;1549 5000 35373;35374;35375;35376;35377;35378;35379;35380 22710;22711;22712;22713 22712 4 LPGELEPVQATQNK Unmodified 1522.7991 0.79912193 1053 K7ER90;K7EL20;Q6IAM0;O75821;K7EP16 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 45.719 46.012 2 0.0014615 16199 20181213_JW_Orientia_Karp_1_2 130.69 77.605 50233000 12496000 15421000 11679000 6159100 0 2406200 0 2071500 5755 1053 5001 35381;35382;35383;35384;35385;35386 22714;22715 22714 2 LPHLPGLEDLGIQATPLELK Unmodified 2153.2096 0.20960543 362 F5H0J3;Q9BTT5;A8K4V2;Q16795 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 0 0 0 0 By matching By MS/MS 1 1 72.583 72.657 3 0.0062253 26759 20181213_JW_Orientia_Karp_3_1 78.674 48.632 16862000 0 0 5217900 0 0 0 11644000 0 5756 362 5002 35387;35388 22716 22716 1 LPIDVTEGEVISLGLPFGK Unmodified 1983.0928 0.092844338 1633 P26599;P26599-2;P26599-3;K7ELW5;K7EKJ7;Q59H49;K7ES59 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 1 1 1 75.48 75.502 2 0.0012548 35360 20181213_JW_Orientia_Karp_1_2 109.99 79.428 76315000 24901000 11463000 24369000 0 0 2061000 12420000 1100600 5757 1633 5003 35389;35390;35391;35392;35393;35394;35395 22717;22718;22719;22720 22718 4 LPIFFFGTHETAFLGPK Unmodified 1921.0138 0.013806156 1523 O75475-3;O75475-2;O75475;Q05CM9 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 71.109 71.225 3 0.027525 25744 20181213_JW_Orientia_Karp_3_1 85.006 67.518 107700000 32086000 19344000 6887100 9140600 10443000 0 29799000 0 5758 1523 5004 35396;35397;35398;35399;35400;35401 22721;22722;22723;22724;22725;22726;22727 22727 7 LPIFVAR Unmodified 814.50651 0.50650915 1214 Karp_00878 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 52.097 52.427 2 0.013656 20263 20181213_JW_Orientia_Karp_1_3 114.67 60.13 60206000 26184000 0 12097000 9934100 0 11731000 259830 0 5759 1214 5005 35402;35403;35404;35405;35406;35407 22728;22729;22730 22730 3 LPIPESQVITINPELPVEEAAEDYAK Unmodified 2864.4695 0.4695211 1485 M0R261;O95336;M0R1L2;M0R0U3 PGLS 6-phosphogluconolactonase yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 73.857 73.89 3 8.2285E-11 34236 20181213_JW_Orientia_Karp_1_2 140.93 106.74 71005000 38213000 24853000 0 0 0 0 7938700 0 5760 1485 5006 35408;35409;35410 22731;22732 22731 2 LPIPHGFIISTK Unmodified 1321.7758 0.77580772 1311 Karp_01258 yes yes 0 0 0 0 By MS/MS By matching 1 1 54.963 55.089 3 0.026082 22686 20181213_JW_Orientia_Karp_1_1 61.435 29.957 13383000 8773500 0 0 0 0 4609300 0 0 5761 1311 5007 35411;35412 22733 22733 1 LPLGMQVIGSR Oxidation (M) 1185.654 0.65397802 1318 Karp_01280 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 47.688 48.033 2 0.00034854 17820 20181213_JW_Orientia_Karp_1_1 144.77 100.96 220090000 36014000 64785000 32672000 28235000 12520000 16759000 158270 28950000 5762 1318 5008 35413;35414;35415;35416;35417;35418;35419;35420 22734;22735;22736;22737;22738;22739 22734 877 6 LPLGMQVIGSR Unmodified 1169.6591 0.6590634 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 56.953 57.298 2 0.013621 24150 20181213_JW_Orientia_Karp_1_1 89.827 50.204 251890000 77623000 57819000 65054000 7885900 17682000 18620000 3507200 3694100 5763 1318 5008 35421;35422;35423;35424;35425;35426;35427;35428 22740 22740 1 LPLQDVYK Unmodified 974.54368 0.54368251 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;B4E2C5;Q9H2I7;Q05639;A9X7H1;Q59GP5 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 46.81 47.103 2 0.0058687 15751 20181213_JW_Orientia_Karp_2_2 117.04 42.701 2120300000 783070000 594710000 473790000 106770000 58654000 101250000 2092900 0 5764 1746 5009 35429;35430;35431;35432;35433;35434;35435 22741;22742;22743;22744;22745 22744 5 LPLQLDDAVRPEAEGEEEGR Unmodified 2222.0815 0.081504383 829 D3DP78;P14868-2;P14868;C9J7S3;C9JLC1;Q53R85 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 52.675 53.035 3 0.016117 20647 20181213_JW_Orientia_Karp_1_3 80.545 40.792 53056000 16421000 0 21162000 4233900 6677100 0 3578900 982840 5765 829 5010 35436;35437;35438;35439;35440;35441 22746 22746 1 LPLVDGQGNFGSMDGDAAAAMR Oxidation (M) 2207.994 0.9939517 1139 Karp_00451 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 59.762 60.011 2 0.0001734 25347 20181213_JW_Orientia_Karp_1_2 116.78 82.679 33115000 14715000 10843000 6079100 1478200 0 0 0 0 5766 1139 5011 35442;35443;35444;35445 22747;22748;22749 22748 671;672 3 LPLVDGQGNFGSMDGDAAAAMR Unmodified 2191.999 0.99903708 1139 Karp_00451 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 64.924 65.04 2 1.0594E-49 28453 20181213_JW_Orientia_Karp_1_2 253.36 195.09 22044000 6195700 6051500 9797000 0 0 0 0 0 5767 1139 5011 35446;35447;35448 22750;22751;22752 22751 3 LPLVDGQGNFGSMDGDAAAAMR 2 Oxidation (M) 2223.9889 0.98886633 1139 Karp_00451 yes yes 0 0 2 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.408 55.675 2 3.557E-05 22192 20181213_JW_Orientia_Karp_1_3 120.59 85.818 39540000 10254000 11511000 7341200 3130100 3825400 3479100 0 0 5768 1139 5011 35449;35450;35451;35452;35453;35454 22753;22754 22754 671;672 2 LPNFGFVVFDDSEPVQK Unmodified 1936.9571 0.95707914 1790 Q6FI03;Q5U0Q1;Q53HH4;Q13283;B7Z8K4;Q6ZP53 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 0 0 0 0 By MS/MS 1 73.404 73.402 2 0.0016988 33605 20181213_JW_Orientia_Karp_1_3 113.76 82.572 19143000 0 0 19143000 0 0 0 0 0 5769 1790 5012 35455 22755 22755 1 LPNSVLGR Unmodified 854.4974 0.49740102 36 A0A024R0S6;Q9NZN4;B4DLA1;B3KUH4;Q9NZN4-2;B4DU62;B7ZAY3 EHD2 EH domain-containing protein 2 yes no 0 0 0 0 By MS/MS 1 39.483 39.681 2 0.038751 12629 20181213_JW_Orientia_Karp_1_3 89.752 14.563 0 0 0 0 0 0 0 0 0 5770 36 5013 35456 22756 22756 1 LPPGEYVVVPSTFEPNK Unmodified 1871.9669 0.96691554 110 A0A024R5A3;A0A024R580;B2RDI5;P07384;B4DWH5 CAPN1 Calpain-1 catalytic subunit yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 62.818 63.171 2 0.041334 26906 20181213_JW_Orientia_Karp_1_3 69.345 44.41 10380000 0 4283500 5434100 0 0 0 0 662040 5771 110 5014 35457;35458;35459 22757 22757 1 LPPLPVTPGMEGAGVVIAVGEGVSDR Unmodified 2516.3309 0.33085955 60 A0A024R1Z6;Q99536;K7ERT7;B3KUF8 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 1 1 74.038 74.037 3 0.00074307 34077 20181213_JW_Orientia_Karp_1_3 74.222 55.286 18370000 8229800 0 10141000 0 0 0 0 0 5772 60 5015 35460;35461 22758;22759 22759 2 LPPNVVEESAR Unmodified 1209.6354 0.63535107 786 CON__ENSEMBL:ENSBTAP00000024146;P01023 A2M Alpha-2-macroglobulin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 40.089 40.389 2 0.02916 13523 20181213_JW_Orientia_Karp_1_1 58.699 22.756 28264000 7363400 4388000 6784200 2785200 256180 0 6687000 0 + 5773 786 5016 35462;35463;35464;35465;35466;35467 22760 22760 1 LPQEQSQLPNPSEASTTFPESHLR Unmodified 2692.3093 0.30927249 838 D3DUZ3 IFI16 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 51.773 52.118 3 9.1596E-08 20224 20181213_JW_Orientia_Karp_1_2 141.29 118.92 294220000 115910000 45726000 89749000 6603000 9123400 6732200 17262000 3111900 5774 838 5017 35468;35469;35470;35471;35472;35473;35474;35475 22761;22762;22763;22764 22762 4 LPQFGISTPGSDLHVNAK Unmodified 1879.9792 0.97921156 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 53.527 53.884 3 2.2369E-12 21780 20181213_JW_Orientia_Karp_1_1 185.63 151.73 228420000 55735000 53493000 72336000 18708000 11177000 16239000 304220 425700 5775 1782 5018 35476;35477;35478;35479;35480;35481;35482;35483 22765;22766;22767;22768;22769;22770 22765 6 LPQLPITNFSR Unmodified 1284.719 0.71902112 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 62.298 62.571 2 0.00042401 27272 20181213_JW_Orientia_Karp_1_1 144.55 71.671 174760000 83552000 24784000 43375000 1570200 8504900 5300100 0 7673600 5776 1615 5019 35484;35485;35486;35487;35488;35489;35490 22771;22772;22773;22774;22775;22776 22771 6 LPQLPITNFSR Deamidation (NQ) 1285.703 0.7030367 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 1 0 0 By MS/MS 1 67.715 67.715 2 0.0121 30303 20181213_JW_Orientia_Karp_1_1 110.54 54.107 0 0 0 0 0 0 0 0 0 5777 1615 5019 35491 22777 22777 1077 1 LPQVAEEISGPLTSANK Unmodified 1752.9258 0.92577901 289 A2VCL5;Q6IB58;Q5ST80;Q53HQ0;O75955-2;O75955 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 58.32 58.503 2 0.0018274 24732 20181213_JW_Orientia_Karp_1_1 147.39 95.626 33750000 14455000 10006000 9288600 0 0 0 0 0 5778 289 5020 35492;35493;35494 22778;22779;22780;22781 22778 4 LPQVSPADSGEYVCR Unmodified 1676.7828 0.78281994 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 47.75 48.095 2 2.4296E-05 17226 20181213_JW_Orientia_Karp_1_3 161.87 127.98 159870000 37048000 36775000 43168000 12191000 4994400 3928000 3391800 18373000 5779 195 5021 35495;35496;35497;35498;35499;35500;35501;35502 22782;22783;22784;22785;22786;22787;22788 22784 7 LPSGSGAASPTGSAVDIR Unmodified 1641.8322 0.83221298 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 43.671 43.973 2 6.3723E-32 14879 20181213_JW_Orientia_Karp_1_3 234.04 177.4 223980000 61761000 39836000 71516000 0 13377000 11837000 21128000 4531000 5780 1782 5022 35503;35504;35505;35506;35507;35508;35509 22789;22790;22791;22792;22793;22794;22795 22791 7 LPSLSLPR Unmodified 881.53345 0.53345218 2049 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 73.276 73.289 2 0.001326 33880 20181213_JW_Orientia_Karp_1_1 175.75 36.905 1037000000 249160000 56806000 142740000 0 30085000 37841000 520340000 0 + 5781 2049 5023 35510;35511;35512;35513;35514;35515;35516;35517;35518;35519;35520;35521;35522 22796;22797;22798;22799;22800;22801;22802 22796 7 LPSSPVYEDAASFK Unmodified 1509.7351 0.73512469 117 A0A024R5M3;Q53HG7;Q14247-3;Q14247;Q14247-2;H0YEV2;B3KRK4;H0YCD9;B4E358 CTTN Src substrate cortactin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.155 52.501 2 2.2652E-05 19104 20181213_JW_Orientia_Karp_2_3 171.49 127.17 218660000 52489000 28180000 28184000 28411000 39101000 27260000 9624900 5406900 5782 117 5024 35523;35524;35525;35526;35527;35528;35529;35530 22803;22804;22805;22806;22807;22808;22809;22810;22811 22809 9 LPTFGAPEQLVDLK Unmodified 1526.8344 0.83444481 1843 Q59GW5;D3DTY9;Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 67.607 67.808 2 1.6504E-11 30126 20181213_JW_Orientia_Karp_1_2 196.02 129.1 72542000 15783000 9936600 17752000 0 7809500 2928600 9703000 8629800 5783 1843 5025 35531;35532;35533;35534;35535;35536;35537 22812;22813;22814;22815;22816;22817;22818 22813 7 LPTGQISGPEIK Unmodified 1238.6871 0.68705229 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.566 45.839 2 2.0073E-16 15928 20181213_JW_Orientia_Karp_1_3 213.35 148.12 377280000 73099000 105370000 98581000 10163000 39380000 17107000 0 33580000 5784 1782 5026 35538;35539;35540;35541;35542;35543;35544;35545 22819;22820;22821;22822;22823;22824;22825;22826;22827 22821 9 LPTTDGAHPQPISPIPGGVSSSGLSR Unmodified 2527.3031 0.3030649 1932 Q96AP7 ESAM Endothelial cell-selective adhesion molecule yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 52.382 52.762 3 1.2121E-18 19259 20181213_JW_Orientia_Karp_2_3 169.33 129.34 261830000 59905000 69242000 68436000 16374000 15979000 20577000 10304000 1015400 5785 1932 5027 35546;35547;35548;35549;35550;35551;35552;35553;35554 22828;22829;22830;22831;22832;22833;22834;22835;22836;22837 22834 10 LPVLLLGR Unmodified 879.59057 0.59057313 522 Q05DJ8;B3KRN4;Q92743;H0Y7G9 HTRA1 Serine protease HTRA1 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 61.637 61.991 2 0.010331 22996 20181213_JW_Orientia_Karp_3_2 103.29 45.822 2362400 0 0 1562300 0 0 0 0 800110 5786 522 5028 35555;35556;35557 22838;22839 22839 2 LPVQLQR Unmodified 852.51814 0.51813647 160 B4E2V5;B4DZK8;A0A024R882;P27105 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 39.51 39.842 2 0.011534 11852 20181213_JW_Orientia_Karp_3_2 119.22 0 349680000 141910000 92357000 37531000 11901000 37038000 3752900 18192000 6996400 5787 160 5029 35558;35559;35560;35561;35562;35563;35564;35565 22840;22841;22842;22843;22844;22845 22845 6 LPYDVTPEQALAHEEVK Unmodified 1937.9735 0.97345748 235 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 51.852 52.102 3 0.0011653 20203 20181213_JW_Orientia_Karp_1_2 104.09 74.11 138800000 48184000 23476000 53284000 8378900 5478400 0 0 0 5788 235 5030 35566;35567;35568;35569;35570 22846;22847;22848 22847 3 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR Oxidation (M);Deamidation (NQ) 3142.4109 0.41091338 595 B4DLR3;Q00839-2;Q00839;Q9UEL2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 1 1 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 1 51.425 51.716 3 6.6356E-10 20050 20181213_JW_Orientia_Karp_1_1 127.24 102.31 269700000 71149000 90463000 38689000 23595000 31808000 4926300 9068500 0 5789 595 5031 35571;35572;35573;35574;35575;35576;35577;35578;35579;35580;35581 22849;22850;22851;22852;22853;22854;22855;22856;22857 22849 210 366 9 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR Deamidation (NQ) 3126.416 0.41599876 595 B4DLR3;Q00839-2;Q00839;Q9UEL2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 55.746 55.975 3 3.7609E-06 22036 20181213_JW_Orientia_Karp_1_3 101.34 83.624 107520000 36201000 21253000 28244000 11786000 6061300 3980400 0 0 5790 595 5031 35582;35583;35584;35585;35586;35587;35588 22858;22859;22860;22861;22862 22860 210 5 LQAASAGLQNNASIASSSASVSTPTAAR Unmodified 2630.326 0.32598518 1067 Karp_00016 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 2 1 1 1 1 48.59 48.84 2;3 6.9069E-14 18305 20181213_JW_Orientia_Karp_1_1 151.58 121.41 104340000 23085000 40427000 19012000 6498200 9460600 5857500 0 0 5791 1067 5032 35589;35590;35591;35592;35593;35594;35595 22863;22864;22865 22863 3 LQAASAGLQNNASIASSSASVSTPTAAR Deamidation (NQ) 2631.31 0.31000077 1067 Karp_00016 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 4 3 2 50.3 50.653 3 2.1308E-07 19375 20181213_JW_Orientia_Karp_1_2 123.76 104.21 823400000 73786000 199640000 202450000 85481000 64228000 122650000 68705000 6456900 5792 1067 5032 35596;35597;35598;35599;35600;35601;35602;35603;35604;35605;35606;35607;35608;35609;35610;35611;35612;35613;35614;35615 22866;22867;22868;22869;22870;22871;22872;22873 22866 404;405;1788 8 LQAASAGLQNNASIASSSASVSTPTAAR 2 Deamidation (NQ) 2632.294 0.29401635 1067 Karp_00016 yes yes 0 2 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.86 53.21 3 0.032614 18831 20181213_JW_Orientia_Karp_3_1 52.739 30.937 46809000 7539800 15273000 16786000 5295100 0 0 1915600 0 5793 1067 5032 35616;35617;35618;35619;35620 22874 22874 404;405;1788 1 LQAAVDGPMDK Oxidation (M) 1159.5543 0.55432356 1699 Q53HT6;Q53G72;P51572;P51572-2 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 30.96 31.37 2 0.031568 7999 20181213_JW_Orientia_Karp_2_1 74.944 38.387 9090600 3409200 0 2874600 607080 0 525910 1427400 246380 5794 1699 5033 35621;35622;35623;35624;35625;35626 22875 22875 1 LQAEAQQLR Unmodified 1055.5724 0.57235688 146 A0A024R7B7;Q16543;K7EQA9;Q6FG59;K7EKQ2 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 30.341 30.743 2 0.0008165 8337 20181213_JW_Orientia_Karp_1_2 135.71 48.015 40560000 14564000 7170200 8384700 2545500 1425200 0 2531600 3938900 5795 146 5034 35627;35628;35629;35630;35631;35632;35633 22876 22876 1 LQAEEVAQQK Unmodified 1142.5932 0.5931519 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 28.678 28.978 2 0.015341 7340 20181213_JW_Orientia_Karp_1_3 86.898 42.473 11440000 2544900 4843300 2622900 0 248390 414280 765920 0 5796 1803 5035 35634;35635;35636;35637;35638;35639 22877;22878 22877 2 LQAEIDNIK Unmodified 1042.5659 0.56587452 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q96GE1;Q3KNV1;Q3B834 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 40.518 40.818 2 0.0075076 12765 20181213_JW_Orientia_Karp_3_1 99.013 47.947 147670000 44457000 45391000 38241000 0 0 0 19579000 0 + 5797 811 5036 35640;35641;35642;35643 22879;22880;22881 22881 3 LQALDTGWNELHK Unmodified 1523.7732 0.77324153 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 48.52 48.822 3 0.0066073 17744 20181213_JW_Orientia_Karp_1_3 121.56 63.518 70758000 14020000 27468000 13545000 6871400 2145700 4054900 0 2654000 5798 506 5037 35644;35645;35646;35647;35648;35649;35650 22882;22883;22884 22884 3 LQAQSLSTVGPR Unmodified 1255.6884 0.68844927 551 B4DDH9;O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 40.386 40.688 2 0.0010065 13715 20181213_JW_Orientia_Karp_1_1 133.89 67.458 54840000 12382000 8432600 9198300 0 11637000 7101300 5501400 587110 5799 551 5038 35651;35652;35653;35654;35655;35656;35657 22885 22885 1 LQAYLEEHAEEEANEEDVLGDETEEEETKPIELPVK Unmodified 4153.9227 0.92266987 977 H0YHG0;P82979;F8VZQ9 SARNP SAP domain-containing ribonucleoprotein yes no 0 0 0 1 By MS/MS 1 60.243 60.494 4 0.010128 23117 20181213_JW_Orientia_Karp_2_2 44.308 21.104 14137000 0 0 0 0 14137000 0 0 0 5800 977 5039 35658 22886 22886 1 LQDAEIAR Unmodified 914.48214 0.48214489 1561 R4GN98;P06703 S100A6 Protein S100;Protein S100-A6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 30.342 30.743 2 0.0042057 7170 20181213_JW_Orientia_Karp_3_2 138.06 21.159 367640000 140350000 49674000 53811000 40003000 28626000 0 23431000 31743000 5801 1561 5040 35659;35660;35661;35662;35663;35664;35665 22887;22888;22889;22890;22891;22892 22892 6 LQDEIQNMK Oxidation (M) 1133.5387 0.53867349 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 27.169 27.566 2 2.2867E-09 6825 20181213_JW_Orientia_Karp_1_3 219.54 139.83 1057500000 125240000 330020000 279230000 46441000 66536000 33598000 109980000 66490000 5802 1571 5041 35666;35667;35668;35669;35670;35671;35672;35673;35674;35675 22893;22894;22895;22896;22897;22898;22899;22900;22901;22902;22903 22895 1191 11 LQDEIQNMK Unmodified 1117.5438 0.54375887 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.76 36.093 2 1.8045E-14 11336 20181213_JW_Orientia_Karp_1_1 237.08 157.63 1268600000 319520000 449400000 347470000 25254000 0 795270 126160000 0 5803 1571 5041 35676;35677;35678;35679;35680;35681;35682;35683 22904;22905;22906;22907;22908;22909;22910;22911 22904 8 LQDEIQNMK Deamidation (NQ) 1118.5278 0.52777445 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 1 0 0 By MS/MS 1 38.083 38.083 2 0.019213 12392 20181213_JW_Orientia_Karp_1_1 100.02 48.951 0 0 0 0 0 0 0 0 0 5804 1571 5041 35684 22912 22912 1052;1921 1 LQDEIQNMK Oxidation (M);Deamidation (NQ) 1134.5227 0.52268908 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 1 1 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 29.476 29.787 2 0.0070705 7806 20181213_JW_Orientia_Karp_1_2 112.11 52.954 47302000 14210000 14835000 14952000 0 0 1235000 2070500 0 5805 1571 5041 35685;35686;35687;35688;35689 22913 22913 1052;1921 1191 1 LQDEIQNMKEEMAR 2 Oxidation (M) 1765.7975 0.79748373 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 0 2 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 26.573 26.931 3 0.0076156 6516 20181213_JW_Orientia_Karp_1_2 98.368 69.044 515100000 70355000 75631000 132110000 45169000 20326000 25745000 110000000 35769000 5806 1571 5042 35690;35691;35692;35693;35694;35695;35696;35697 22914;22915;22916;22917;22918;22919;22920;22921 22915 1191;1192 8 LQDEIQNMKEEMAR Oxidation (M) 1749.8026 0.80256911 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 0 1 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 33.179 33.534 3 0.0034035 9329 20181213_JW_Orientia_Karp_2_1 126.5 73.363 514410000 145020000 184080000 109650000 11224000 10900000 0 52853000 678150 5807 1571 5042 35698;35699;35700;35701;35702;35703;35704;35705;35706;35707;35708;35709;35710 22922;22923;22924;22925;22926;22927;22928 22925 1191;1192 7 LQDEIQNMKEEMAR Unmodified 1733.8077 0.80765448 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 HEL113;VIM Vimentin yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 42.743 43.072 3 0.0079542 14989 20181213_JW_Orientia_Karp_1_1 144.51 102.93 382190000 125910000 118830000 93646000 4491400 0 0 39312000 0 5808 1571 5042 35711;35712;35713;35714;35715 22929 22929 1 LQDLYSIVR Unmodified 1105.6132 0.61315906 835 D3DSM4;D3DSM5;P39060-2;P39060-1;P39060;H7BXV5;H7C457;Q8NG19 COL18A1 Collagen alpha-1(XVIII) chain;Endostatin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 55.19 55.506 2 0.0098378 22430 20181213_JW_Orientia_Karp_1_2 94.409 39.297 42938000 14809000 5377200 10453000 979180 5459900 5659200 0 200350 5809 835 5043 35716;35717;35718;35719;35720;35721;35722 22930;22931;22932;22933 22931 4 LQDPFSLYR Unmodified 1137.5819 0.58185894 1618 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 59.313 59.575 2 0.016739 25072 20181213_JW_Orientia_Karp_1_2 86.136 25.546 17408000 0 6071900 6719500 0 2088700 2528200 0 0 5810 1618 5044 35723;35724;35725;35726 22934 22934 1 LQEAGILSAEELQR Unmodified 1555.8206 0.82058566 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 53.814 54.187 2 1.6833E-59 21301 20181213_JW_Orientia_Karp_1_3 284.92 179.76 128950000 41984000 43275000 32401000 2915900 0 2574400 2417700 3384300 5811 1803 5045 35727;35728;35729;35730;35731;35732;35733 22935;22936;22937;22938;22939 22937 5 LQEASWNEALEYIADK Unmodified 1878.9 0.89995819 1457 Karp_02594 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 69.225 69.335 2 1.5696E-05 30883 20181213_JW_Orientia_Karp_1_3 160.46 123.51 54189000 14564000 0 13845000 0 8193400 4730600 12855000 0 5812 1457 5046 35734;35735;35736;35737;35738 22940;22941;22942;22943 22941 4 LQEDYDMESVLR Oxidation (M) 1512.6766 0.67662354 24 A0A024QZT4;P50453;Q6N0A8 SERPINB9;DKFZp686O07189 Serpin B9 yes no 0 0 1 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 45.949 46.202 2 0.0061316 16650 20181213_JW_Orientia_Karp_1_1 102.05 61.32 20609000 8480700 6574100 0 0 764810 2234600 0 2555300 5813 24 5047 35739;35740;35741;35742;35743 22944;22945 22944 16 2 LQEEMLQR Oxidation (M) 1061.5175 0.51754412 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 28.829 29.151 2 5.4421E-06 7819 20181213_JW_Orientia_Karp_1_1 209.84 99.033 3015800000 776230000 1136700000 540400000 166290000 87924000 86911000 221370000 0 5814 1571 5048 35744;35745;35746;35747;35748;35749;35750;35751;35752;35753;35754;35755;35756;35757;35758;35759 22946;22947;22948;22949;22950;22951;22952;22953;22954;22955;22956;22957;22958;22959;22960;22961 22946 1193 16 LQEEMLQR Unmodified 1045.5226 0.5226295 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.587 36.909 2 5.6666E-05 10857 20181213_JW_Orientia_Karp_3_1 204.03 105.4 2873600000 1285400000 601650000 689670000 46135000 57100000 34116000 159460000 0 5815 1571 5048 35760;35761;35762;35763;35764;35765;35766 22962;22963;22964;22965;22966;22967;22968;22969 22968 8 LQEKVQIQRQK Acetyl (Protein N-term);2 Deamidation (NQ) 1440.7936 0.79364262 1839 Q59EA5 yes yes 1 2 0 2 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 63.757 63.978 2 0.037959 27498 20181213_JW_Orientia_Karp_1_3 58.246 7.7627 35709000 17065000 5807600 12365000 124130 0 0 0 347520 5816 1839 5049 35767;35768;35769;35770;35771 22970 22970 2002;2003 1 LQELEGAVK Unmodified 985.54441 0.5444108 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 36.688 37.031 2 0.0017546 11230 20181213_JW_Orientia_Karp_1_3 120.99 31.236 41472000 17188000 11303000 7094400 0 0 1156800 3616900 1113500 5817 944 5050 35772;35773;35774;35775;35776;35777 22971;22972;22973;22974;22975 22973 5 LQELTPSSGDPGEHDPASTHK Unmodified 2202.0189 0.018904126 1843 Q59GW5;D3DTY9 TRIM25 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 32.252 32.604 3;4 0.025745 9098 20181213_JW_Orientia_Karp_1_2 60.564 17.267 64561000 19538000 22040000 13831000 1636100 0 0 6237300 1278400 5818 1843 5051 35778;35779;35780;35781;35782;35783;35784;35785;35786;35787 22976;22977;22978 22977 3 LQEMEGTVK Oxidation (M) 1049.5063 0.50631073 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 22.558 22.927 2 0.0062459 5185 20181213_JW_Orientia_Karp_1_1 99.013 23.8 37067000 13286000 14422000 0 0 2256100 2316200 3035500 1751700 5819 47 5052 35788;35789;35790;35791;35792;35793 22979;22980 22979 43 2 LQEMEVPVLPK Oxidation (M);Deamidation (NQ) 1298.6792 0.67918972 1688 P49790-3 yes yes 0 1 1 0 By MS/MS By matching 1 1 54.339 54.919 2 0.034573 20102 20181213_JW_Orientia_Karp_2_1 73.233 32.351 2035000 0 0 0 1830100 0 0 0 204840 5820 1688 5053 35794;35795 22981 22981 1955 0 LQENLQQLQHSTNQLAK Unmodified 1992.0389 0.038851707 435 B1AJQ6;B4DSZ1;Q6LEU0;Q86Y82 STX12 Syntaxin-12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 41.567 41.811 3 0.0048274 13781 20181213_JW_Orientia_Karp_1_3 89.506 55.111 140960000 47860000 46136000 31098000 0 3982200 8945900 0 2939400 5821 435 5054 35796;35797;35798;35799;35800;35801 22982;22983;22984 22984 3 LQEQQQQMEAQVKSRK Oxidation (M);4 Deamidation (NQ) 1977.9313 0.93133467 344 B4DRS8;B4DRX0;B0AZP3;A8K2N8 yes no 0 4 1 2 By MS/MS 1 64.796 64.947 3 0.035863 25289 20181213_JW_Orientia_Karp_2_2 43.316 15.55 1837400 0 0 0 0 1837400 0 0 0 5822 344 5055 35802 22985 22985 1401;1402;1403;1404 0 LQETSEMHLFISLK Unmodified 1674.8651 0.86509301 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.656 57.966 3 0.021621 23807 20181213_JW_Orientia_Karp_1_3 79.639 25.439 151530000 30388000 62287000 25791000 11469000 0 15621000 0 5975600 5823 1349 5056 35803;35804;35805;35806;35807;35808 22986;22987;22988;22989;22990;22991 22987 5 LQGEIAHVK Unmodified 993.56073 0.56072956 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 25.021 25.379 2 0.010249 4944 20181213_JW_Orientia_Karp_2_2 93.598 38.093 32470000 3774600 4108600 5416100 3377000 2127200 1617700 6407200 5641200 + 5824 804;1657 5057 35809;35810;35811;35812;35813;35814;35815;35816 22992;22993 22992 2 LQHVEDGVLSMQVASAR Oxidation (M) 1854.9258 0.92579578 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 41.176 41.506 3 0.00048863 14146 20181213_JW_Orientia_Karp_1_1 125.41 71.651 161770000 34384000 57386000 22849000 5679600 8200300 0 30797000 2473600 5825 224 5058 35817;35818;35819;35820;35821;35822;35823 22994;22995;22996 22994 171 3 LQHVEDGVLSMQVASAR Unmodified 1838.9309 0.93088116 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 47.68 47.981 3 0.006545 17507 20181213_JW_Orientia_Karp_1_2 146.1 87.285 126260000 25685000 38256000 27434000 9801300 3619000 7407200 0 14056000 5826 224 5058 35824;35825;35826;35827;35828;35829;35830 22997;22998;22999 22998 3 LQIELGK Unmodified 799.48035 0.48035398 1613 P20700;E9PBF6;Q6DC98 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 43.842 44.204 2 0.030159 15643 20181213_JW_Orientia_Karp_1_1 89.296 0 33646000 17862000 0 5138900 8715100 0 0 1711800 219020 5827 1613 5059 35831;35832;35833;35834;35835;35836 23000;23001;23002 23000 3 LQIQCVVEDDK Unmodified 1345.6548 0.65476588 1641;80 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;E9PK01;P29692-4;H0YE72;H0YE58;A0A024R3W7;P24534;A4D1M6 EEF1D;EEF1B2;LOC392793 Elongation factor 1-delta;Elongation factor 1-beta no no 0 0 0 0 By MS/MS By MS/MS By matching 2 1 1 47.345 47.678 2 0.007673 17507 20181213_JW_Orientia_Karp_1_1 121.61 55.04 324150000 260990000 62500000 0 0 0 0 664770 0 5828 1641;80 5060 35837;35838;35839;35840 23003;23004 23003 2 LQISSDIK Unmodified 902.5073 0.50729701 1256 Karp_00936 yes yes 0 0 0 0 By MS/MS 1 39.367 39.367 2 0.028653 13047 20181213_JW_Orientia_Karp_1_1 95.531 18.156 0 0 0 0 0 0 0 0 0 5829 1256 5061 35841 23005 23005 1 LQIVAANDLDDAAR Unmodified 1483.7631 0.76307078 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 53.079 53.381 2 2.5932E-18 20866 20181213_JW_Orientia_Karp_1_3 224.25 172.3 641580000 162360000 127890000 205780000 48771000 43481000 43559000 0 9745300 5830 1121 5062 35842;35843;35844;35845;35846;35847;35848 23006;23007;23008;23009;23010;23011;23012 23008 7 LQIVAANDLDDAAR Deamidation (NQ) 1484.7471 0.74708636 1121 Karp_00319 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 54.936 55.252 2 0.00055656 22661 20181213_JW_Orientia_Karp_1_1 151.16 105.17 153940000 43665000 44595000 44044000 6828600 1626800 10397000 0 2787800 5831 1121 5062 35849;35850;35851;35852;35853;35854;35855 23013;23014;23015;23016;23017 23013 497 5 LQLAWSDR Unmodified 987.51378 0.51377937 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 49.721 50.022 2 0.0098887 19229 20181213_JW_Orientia_Karp_1_1 104.2 38.945 86164000 16073000 20906000 13736000 22640000 3122700 7459500 0 2227300 5832 1188 5063 35856;35857;35858;35859;35860;35861;35862 23018;23019;23020 23018 3 LQLETEIEALK Unmodified 1285.7129 0.71293269 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1 1 1 58.592 58.905 2 2.4866E-05 24770 20181213_JW_Orientia_Karp_1_2 166.69 70.658 134600000 22213000 47134000 30642000 1923100 15893000 7590800 596540 8606300 5833 208 5064 35863;35864;35865;35866;35867;35868;35869;35870;35871 23021;23022;23023;23024;23025 23022 5 LQLPIPSEER Unmodified 1180.6452 0.64518747 1456 Karp_02593 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 54.819 55.177 2 0.0052561 22601 20181213_JW_Orientia_Karp_1_1 102.06 36.596 1012000000 279290000 242200000 231130000 106510000 79967000 70809000 455830 1642400 5834 1456 5065 35872;35873;35874;35875;35876;35877;35878;35879 23026;23027;23028;23029;23030;23031 23026 6 LQLQDSNTVSLAK Unmodified 1415.762 0.76200815 1117 Karp_00306 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 46.505 46.77 2 3.5148E-07 17044 20181213_JW_Orientia_Karp_1_1 182.92 110.68 38195000 15451000 9719000 9842700 0 0 0 0 3182800 5835 1117 5066 35880;35881;35882;35883 23032;23033;23034 23032 3 LQMAPNSYTAQCVK Oxidation (M);3 Deamidation (NQ) 1628.7062 0.7062091 319 A6NHR8 FAM47DP Putative protein FAM47D yes yes 0 3 1 0 By MS/MS 1 54.611 54.611 2 0.037718 22242 20181213_JW_Orientia_Karp_1_1 58.699 20.983 0 0 0 0 0 0 0 0 0 5836 319 5067 35884 23035 23035 1381;1382 1 LQMEAPHIIVGTPGR Oxidation (M) 1633.861 0.86101068 387 A8K7F6;P60842;J3KT12;A8K088;P60842-2;J3QLN6;J3QR64;J3KTB5;J3QL43;J3QS69;Q59F68;J3QKZ9;B4E047;J3KS25;J3KSZ0 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 43.055 43.397 3 0.0042865 13481 20181213_JW_Orientia_Karp_3_2 105.14 66.338 68351000 16681000 23769000 15931000 0 0 0 10158000 1811900 5837 387 5068 35885;35886;35887;35888;35889 23036;23037;23038 23038 269 3 LQMEAPHIIVGTPGR Unmodified 1617.8661 0.86609606 387 A8K7F6;P60842;J3KT12;A8K088;P60842-2;J3QLN6;J3QR64;J3KTB5;J3QL43;J3QS69;Q59F68;J3QKZ9;B4E047;J3KS25;J3KSZ0 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 50.927 51.227 3 0.0034261 19555 20181213_JW_Orientia_Karp_1_2 98.281 65.803 89927000 16983000 33457000 32673000 0 0 0 6813800 0 5838 387 5068 35890;35891;35892;35893 23039;23040;23041;23042 23040 4 LQMEFKAVQQVQR Oxidation (M);4 Deamidation (NQ) 1623.7814 0.78142296 2007 Q9Y244 POMP Proteasome maturation protein yes yes 0 4 1 1 By MS/MS 1 47.817 47.968 2 0.038183 16241 20181213_JW_Orientia_Karp_2_2 42.743 14.539 0 0 0 0 0 0 0 0 0 5839 2007 5069 35894 23043 23043 2112;2113;2114;2115 1 LQNELDNVSTLLEEAEK Unmodified 1943.9688 0.96876604 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 69.899 70.032 2;3 8.3956E-18 31841 20181213_JW_Orientia_Karp_1_1 210.08 146.61 119380000 27679000 19744000 21339000 3636600 6891400 3935600 30019000 6134400 5840 944 5070 35895;35896;35897;35898;35899;35900;35901;35902;35903;35904;35905;35906;35907;35908 23044;23045;23046;23047;23048;23049;23050;23051 23044 8 LQPGHIEDTSTSSEVIEYLTK Unmodified 2346.1591 0.159086 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 58.669 58.962 3 4.8556E-05 24282 20181213_JW_Orientia_Karp_1_3 121.48 89.683 296870000 86447000 49174000 83614000 28856000 30607000 16667000 1509100 0 5841 1374 5071 35909;35910;35911;35912;35913;35914;35915 23052;23053;23054;23055;23056;23057 23054 6 LQPQTTYDITVLPIYK Unmodified 1892.0295 0.029515799 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 68.365 68.572 2 0.001543 30662 20181213_JW_Orientia_Karp_1_2 120.87 76.329 40373000 16156000 5725000 8488000 1234900 2550600 1499200 3271700 1447600 5842 852 5072 35916;35917;35918;35919;35920;35921;35922;35923 23058 23058 1 LQQAIILSMTR Oxidation (M) 1288.7173 0.71730656 1270 Karp_01078 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.149 47.494 2 4.4099E-07 17445 20181213_JW_Orientia_Karp_1_1 181.87 114.38 202710000 48677000 55010000 36224000 11361000 4057700 18297000 2100200 26983000 5843 1270 5073 35924;35925;35926;35927;35928;35929;35930;35931 23059;23060;23061;23062;23063;23064 23059 836 6 LQQAIILSMTR Unmodified 1272.7224 0.72239194 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 56.068 56.426 2 4.1942E-07 23452 20181213_JW_Orientia_Karp_1_1 184.71 126.11 232180000 87730000 46931000 43546000 23243000 12107000 15508000 1693300 1419900 5844 1270 5073 35932;35933;35934;35935;35936;35937;35938;35939 23065;23066;23067;23068;23069;23070;23071 23065 7 LQQDRLNSEQSQALQHQQETGSSLK 2 Deamidation (NQ) 2854.3693 0.36930656 420 A8MZ36 EVPLL Envoplakin-like protein yes yes 0 2 0 1 By MS/MS By matching 1 1 63.449 63.654 3 0.031066 27957 20181213_JW_Orientia_Karp_1_1 47.931 18.598 13143000 11722000 0 0 0 0 0 0 1420200 5845 420 5074 35940;35941 23072 23072 1441;1442 0 LQQELDDLLVDLDHQR Unmodified 1948.9854 0.98541915 47 A0A024R1N1;P35579 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.849 66.042 3 7.1801E-06 25766 20181213_JW_Orientia_Karp_2_2 159.14 120.16 972770000 327010000 158810000 131960000 9409500 107780000 61939000 175860000 0 5846 47 5075 35942;35943;35944;35945;35946;35947;35948 23073;23074;23075;23076;23077;23078;23079;23080 23077 8 LQQELDDLTVDLDHQR Unmodified 1936.949 0.94903365 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.521 54.837 3 0.0013929 22347 20181213_JW_Orientia_Karp_1_1 145.7 100.77 229600000 57961000 68741000 65460000 12348000 13939000 9666200 0 1481200 5847 944 5076 35949;35950;35951;35952;35953;35954;35955 23081;23082;23083;23084;23085;23086;23087 23081 7 LQQGVNEAR Unmodified 1013.5254 0.52540669 1182 Karp_00659 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.671 22.066 2 0.0010175 4443 20181213_JW_Orientia_Karp_3_1 131.5 76.892 32775000 0 12338000 5870100 2258400 1418400 2617300 5722700 2549300 5848 1182 5077 35956;35957;35958;35959;35960;35961;35962;35963 23088;23089;23090;23091;23092 23091 5 LQQGYNAMGFSQGGQFLR Oxidation (M) 2016.9476 0.94759386 1694 P50897;B4DWU3;E9PMG2;E9PP28;E9PK48 PPT1 Palmitoyl-protein thioesterase 1 yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 52.52 52.636 2 7.9163E-07 19286 20181213_JW_Orientia_Karp_2_3 184.11 130.54 11715000 4681300 0 4153500 0 2880600 0 0 0 5849 1694 5078 35964;35965;35966;35967 23093;23094 23094 1306 2 LQQLEDK Unmodified 872.46035 0.46034682 803 CON__P34955 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.309 25.526 2 0.016412 6420 20181213_JW_Orientia_Karp_1_1 109.01 14.751 16222000 2593100 6285600 1650600 2264500 2148500 1279800 0 0 + 5850 803 5079 35968;35969;35970;35971;35972;35973;35974;35975 23095;23096;23097;23098;23099;23100 23095 6 LQQLFNHTMFILEQEEYQR Oxidation (M) 2482.1951 0.19509435 47;944 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 58.177 58.467 3 0.0011357 24762 20181213_JW_Orientia_Karp_1_1 107.91 78.014 69353000 35399000 13623000 13476000 0 0 0 0 6854500 5851 47;944 5080 35976;35977;35978;35979 23101;23102;23103;23104 23101 44 2 LQQLPADFGR Unmodified 1143.6037 0.60365701 1931 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 48.3 48.482 2 0.0011834 18127 20181213_JW_Orientia_Karp_1_1 109.44 52.629 135910000 40030000 63615000 32268000 0 0 0 0 0 5852 1931 5081 35980;35981;35982 23105;23106;23107 23105 3 LQQLQQLK Unmodified 997.59203 0.59202969 1069 Karp_00038 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 2 1 1 2 1 35.843 36.197 1;2 2.2895E-26 10917 20181213_JW_Orientia_Karp_1_2 259.36 124.69 1284100000 405380000 254770000 191230000 58749000 103070000 979520 266850000 3122300 5853 1069 5082 35983;35984;35985;35986;35987;35988;35989;35990;35991;35992;35993;35994;35995;35996 23108;23109;23110;23111;23112;23113;23114;23115 23109 7 LQQLQQLKQEEEVSSYYVR Unmodified 2367.207 0.20703925 1069 Karp_00038 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.324 50.632 3 0.00039545 17089 20181213_JW_Orientia_Karp_3_1 120.08 82.677 88647000 21995000 18031000 14883000 11905000 7130500 9055900 5646200 0 5854 1069 5083 35997;35998;35999;36000;36001;36002;36003 23116;23117;23118;23119 23119 4 LQQQHSEQPPLQPSPVMTR Oxidation (M) 2216.1008 0.10080004 1026 J3KN66;Q5JTV8-3;Q5JTV8;H0YDU3;Q5JTV8-2 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 36.897 37.259 3 0.0040302 11434 20181213_JW_Orientia_Karp_1_2 97.776 63.828 61546000 16635000 16643000 15495000 0 0 0 7665300 5107000 5855 1026 5084 36004;36005;36006;36007;36008 23120;23121;23122;23123 23120 563 4 LQQQHSEQPPLQPSPVMTR Unmodified 2200.1059 0.10588542 1026 J3KN66;Q5JTV8-3;Q5JTV8;H0YDU3;Q5JTV8-2 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 By MS/MS 1 41.008 41.206 3 0.00045042 13377 20181213_JW_Orientia_Karp_1_3 110.34 69.482 11579000 0 0 11579000 0 0 0 0 0 5856 1026 5084 36009 23124;23125 23125 2 LQQQHSEQPPLQPSPVMTR 3 Deamidation (NQ) 2203.0579 0.057932169 1026 J3KN66;Q5JTV8-3;Q5JTV8;H0YDU3;Q5JTV8-2 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 3 0 0 By MS/MS 1 32.272 32.821 3 0.042781 8468 20181213_JW_Orientia_Karp_2_1 41.348 10.761 0 0 0 0 0 0 0 0 0 5857 1026 5084 36010 23126 23126 1770;1771;1772 1 LQQQLTQAAQELAAEK Unmodified 1768.9319 0.93192702 1801 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 3 1 1 2 1 2 1 52.775 53.07 2;3 0.0002537 19192 20181213_JW_Orientia_Karp_2_1 132.15 90.459 36011000 5160400 3544100 4339700 9132300 3967400 8251300 1616300 0 5858 1801 5085 36011;36012;36013;36014;36015;36016;36017;36018;36019;36020;36021 23127;23128;23129;23130 23129 4 LQQQLTQAQETLK 4 Deamidation (NQ) 1531.7617 0.76173337 485 B4DY59;E9PF19;B4DY50;Q8N2L6;B2RB52;Q9Y4P3 TBL2 Transducin beta-like protein 2 yes no 0 4 0 0 By MS/MS 1 48.92 48.92 2 0.037416 18459 20181213_JW_Orientia_Karp_1_1 49.3 12.715 0 0 0 0 0 0 0 0 0 5859 485 5086 36022 23131 23131 1473;1474;1475;1476 1 LQQQLTQAQETLK Unmodified 1527.8257 0.82567103 485 B4DY59;E9PF19;B4DY50;Q8N2L6;B2RB52;Q9Y4P3 TBL2 Transducin beta-like protein 2 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 40.565 40.83 2 0.0004918 13342 20181213_JW_Orientia_Karp_1_2 153.74 47.54 17878000 4902500 6675700 5060500 0 0 0 0 1239000 5860 485 5086 36023;36024;36025;36026 23132 23132 1 LQQQQQQLK Unmodified 1140.6251 0.62512073 2041 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 2 1 1 38.528 38.909 3 0.0016045 12225 20181213_JW_Orientia_Karp_1_3 107.29 40.603 13252000 0 3811900 8655600 0 0 0 695090 89525 + 5861 2041 5087 36027;36028;36029;36030;36031 23133 23133 1 LQQQQQQQQLAQMK 3 Deamidation (NQ) 1729.8305 0.83049842 89 B4DZM1;A0A024R4A5;I1E4Y6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6;Q6Y7W6-3 TNRC15;GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 0 3 0 0 By MS/MS 1 26.2 26.851 3 0.042015 6218 20181213_JW_Orientia_Karp_3_1 44.829 17.73 0 0 0 0 0 0 0 0 0 5862 89 5088 36032 23134 23134 1291;1292;1293;1294;1295 1 LQQSHPLSATQIQVK Unmodified 1676.921 0.9209684 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 36.796 37.127 3 0.00032276 11383 20181213_JW_Orientia_Karp_1_2 134.02 100.71 97504000 39231000 25044000 15879000 0 3715600 2414100 8414200 2805500 5863 316 5089 36033;36034;36035;36036;36037;36038;36039 23135;23136;23137;23138;23139;23140 23136 6 LQQTQNQVDEVVDIMR Unmodified 1914.9469 0.94692516 1810 Q6FGG2;Q15836 VAMP3 Vesicle-associated membrane protein 3 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 59.271 59.545 2 6.8397E-07 24762 20181213_JW_Orientia_Karp_1_3 191.19 123.26 12412000 0 5548400 6863900 0 0 0 0 0 5864 1810 5090 36040;36041;36042 23141;23142 23142 2 LQQTQNQVDEVVDIMR Oxidation (M) 1930.9418 0.94183978 1810 Q6FGG2;Q15836 VAMP3 Vesicle-associated membrane protein 3 yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 49.588 49.822 2 4.5569E-21 18583 20181213_JW_Orientia_Karp_1_2 225.33 168.78 20002000 0 10359000 7695400 0 1947800 0 0 0 5865 1810 5090 36043;36044;36045;36046 23143;23144;23145;23146 23144 1449 4 LQQTQSLHSLR Unmodified 1309.7102 0.71024735 1490 Q53HN4;O00273 DFFA DNA fragmentation factor subunit alpha yes no 0 0 0 0 By MS/MS 1 27.253 27.905 3 0.042156 6737 20181213_JW_Orientia_Karp_3_1 45.915 19.401 1040500 0 0 0 0 0 0 1040500 0 5866 1490 5091 36047 23147 23147 1 LQSIGTENTEENR Unmodified 1489.7009 0.70086445 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 31.845 32.125 2 0.0047254 8963 20181213_JW_Orientia_Karp_1_2 111.86 69.979 14757000 8638400 3357600 0 1173800 1066700 520610 0 0 5867 1546 5092 36048;36049;36050;36051;36052 23148 23148 1 LQSIGTENTEENRR Deamidation (NQ) 1646.786 0.78599106 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 1 0 1 By MS/MS By matching By matching By matching 1 1 1 1 26.149 26.514 3 0.039892 6729 20181213_JW_Orientia_Karp_1_1 52.495 17.727 1583500000 886820000 0 44353000 0 0 0 222800000 429560000 5868 1546 5093 36053;36054;36055;36056 23149 23149 0 LQSPNVFTPK Unmodified 1129.6132 0.61315906 1392 Karp_02141 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 44.637 44.939 2 7.2951E-06 15138 20181213_JW_Orientia_Karp_2_3 166.07 77.252 780670000 217850000 250890000 181860000 0 48452000 30514000 50532000 569010 5869 1392 5094 36057;36058;36059;36060;36061;36062;36063 23150;23151;23152;23153;23154;23155 23154 6 LQSQYASSEATISQLR Unmodified 1780.8955 0.89554151 1801 Q15075;A8K7J3;Q05D76 EEA1 Early endosome antigen 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 46.862 47.063 2 0.013689 15755 20181213_JW_Orientia_Karp_2_2 89.992 56.935 5058600 0 0 0 0 2070800 2987800 0 0 5870 1801 5095 36064;36065;36066 23156;23157 23157 2 LQSSLESEVSVLASK Unmodified 1575.8356 0.83556702 609 B4DNL3;Q9P0K7-4;Q9P0K7-3;Q9P0K7;Q9P0K7-2;B3KMZ9 RAI14 Ankycorbin yes no 0 0 0 0 By MS/MS 1 56.849 57.047 2 0.04259 23167 20181213_JW_Orientia_Karp_1_3 100.4 29.999 0 0 0 0 0 0 0 0 0 5871 609 5096 36067 23158 23158 1 LQTDNMSVVLAK Oxidation (M) 1333.6912 0.69115139 1133 Karp_00399 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 39.978 40.278 2 0.000448 13037 20181213_JW_Orientia_Karp_1_2 148.56 74.892 58809000 14714000 12694000 13377000 4626900 2260700 0 11137000 0 5872 1133 5097 36068;36069;36070;36071;36072;36073 23159;23160 23160 666 2 LQTNIILLIK Unmodified 1167.7591 0.75909502 1125 Karp_00328 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 65.577 65.758 2 0.00033962 29306 20181213_JW_Orientia_Karp_1_1 140.17 67.29 40882000 16396000 10330000 5991200 0 6609800 0 0 1554900 5873 1125 5098 36074;36075;36076;36077;36078 23161;23162;23163;23164 23161 4 LQTSSVLVSGLR Unmodified 1258.7245 0.72450043 42 A0A024R1A3;P22314-2;P22314;Q5JRS1;Q5JRS3;Q5JRS2;Q5JRR9;Q5JRS0 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 50.911 51.245 2 0.00020209 19637 20181213_JW_Orientia_Karp_1_2 159.94 113.12 11406000 3078100 5012900 0 0 0 0 3314500 0 5874 42 5099 36079;36080;36081 23165;23166 23166 2 LQTTDNLLPMSPEEFDEVSR Unmodified 2320.0893 0.089291877 1669 P42224;H7BZ88 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 70.859 70.942 2 0.0066551 31919 20181213_JW_Orientia_Karp_1_3 101.75 60.109 18478000 6615600 6624000 5238800 0 0 0 0 0 5875 1669 5100 36082;36083;36084 23167;23168 23168 2 LQTWDEAVFR Unmodified 1263.6248 0.62478638 1534 O95786-2;O95786;B3KWW1;B3KN51;A2A376 DDX58 Probable ATP-dependent RNA helicase DDX58 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 56.759 57.145 2 0.0038384 23520 20181213_JW_Orientia_Karp_1_2 104.42 51.638 14027000 0 5116000 7785800 0 0 0 0 1125700 5876 1534 5101 36085;36086;36087 23169 23169 1 LQVELDNVTGLLSQSDSK Unmodified 1945.0004 0.0004005156 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 1 2 2 2 2 68.891 69.038 2;3 1.8823E-164 30653 20181213_JW_Orientia_Karp_1_3 426.22 324.5 1103900000 253360000 259440000 164990000 0 56243000 48420000 248880000 72618000 5877 47 5102 36088;36089;36090;36091;36092;36093;36094;36095;36096;36097;36098;36099;36100 23170;23171;23172;23173;23174;23175;23176;23177 23172 7 LQVEPAVDTSGVQCYGPGIEGQGVFR Unmodified 2762.3334 0.33337875 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 65.113 65.313 3 3.1856E-05 28958 20181213_JW_Orientia_Karp_1_1 107.65 82.751 74243000 20194000 23308000 17411000 0 0 0 13329000 0 5878 1615 5103 36101;36102;36103;36104 23178 23178 1 LQVNLANSSQR Deamidation (NQ) 1229.6364 0.6364137 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 2 1 1 41.311 41.597 2 0.006859 13263 20181213_JW_Orientia_Karp_2_1 110.54 47.325 126770000 35694000 7342600 36302000 7250000 0 29799000 8562500 1823100 5879 1266 5104 36105;36106;36107;36108;36109;36110;36111;36112;36113;36114 23179;23180;23181 23181 679 3 LQVNLANSSQR Unmodified 1228.6524 0.65239812 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS 1 37.99 38.141 2 0.010404 10887 20181213_JW_Orientia_Karp_2_2 102.53 54.874 4970400 0 0 0 0 4970400 0 0 0 5880 1266 5104 36115 23182 23182 1 LQVTMPGIK Unmodified 985.56304 0.56303775 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 50.777 51.079 2 0.02601 19334 20181213_JW_Orientia_Karp_1_3 80.455 14.651 48439000 6309600 12623000 7930700 10346000 3880400 7033500 0 315720 5881 1782 5105 36116;36117;36118;36119;36120;36121;36122 23183;23184;23185 23184 3 LQYSLQHIQELER 3 Deamidation (NQ) 1658.8152 0.81516593 1581 P0CG33 GOLGA6D Putative golgin subfamily A member 6D yes yes 0 3 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 37.607 37.941 3 0.01916 11513 20181213_JW_Orientia_Karp_3_1 84.169 21.078 73867000 9404600 15288000 22980000 8162500 0 4502300 13530000 0 5882 1581 5106 36123;36124;36125;36126;36127;36128 23186 23186 1927;1928;1929 0 LRDLEDSLAR Unmodified 1186.6306 0.63060004 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 2 1 2 37.96 38.305 2;3 0.00014791 12491 20181213_JW_Orientia_Karp_1_1 147.3 57.253 143290000 43833000 64918000 19555000 4881200 3167600 0 6936400 0 5883 1543;1544;1851 5107 36129;36130;36131;36132;36133;36134;36135;36136;36137;36138 23187;23188;23189;23190;23191 23187 5 LRENELTYYCCK Unmodified 1647.7385 0.73851229 906 E9PNW4;Q6FHM9;E9PR17;P13987;H0YET2 CD59 CD59 glycoprotein yes no 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 36.931 37.244 3 0.0077332 10995 20181213_JW_Orientia_Karp_3_1 137.01 103.69 43872000 17779000 8908300 0 0 5046900 0 12138000 0 5884 906 5108 36139;36140;36141;36142 23192 23192 1 LRENVFQEHQTLK Unmodified 1640.8635 0.86345352 117 A0A024R5M3;Q53HG7;Q14247-3;Q14247;Q14247-2;Q76MU0;H7C314 CTTN;EMS1 Src substrate cortactin yes no 0 0 0 1 By matching By matching By MS/MS 1 1 1 31.95 32.118 4 0.027276 8394 20181213_JW_Orientia_Karp_2_3 47.227 22.802 23948000 15606000 0 0 0 5437300 2904000 0 0 5885 117 5109 36143;36144;36145 23193 23193 0 LREQLQLLEEQHR Unmodified 1690.9115 0.91146635 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;H0YDN1 PLEC;PLEC1 Plectin yes no 0 0 0 1 By MS/MS By MS/MS By matching 1 1 1 38.501 38.867 3 0.015385 12401 20181213_JW_Orientia_Karp_1_2 91.712 49.395 49901000 0 35455000 13001000 1445600 0 0 0 0 5886 1803 5110 36146;36147;36148 23194;23195 23194 2 LRETLNISGPPLK Unmodified 1436.8351 0.83511351 1639 V9HW38;P28838-2;P28838;H0Y983 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 45.685 45.885 3 0.016037 15516 20181213_JW_Orientia_Karp_2_3 90.731 45.474 63472000 28827000 17803000 15254000 0 0 1588700 0 0 5887 1639 5111 36149;36150;36151;36152 23196 23196 1 LRLPQVSPADSGEYVCR Unmodified 1945.968 0.96799495 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 49.443 49.693 3 1.7263E-11 18325 20181213_JW_Orientia_Karp_1_3 180.56 142.61 74183000 18711000 19372000 19326000 8871600 3454700 4448400 0 0 5888 195 5112 36153;36154;36155;36156;36157;36158 23197;23198;23199;23200 23199 4 LRNGVAVLK Deamidation (NQ) 969.59712 0.59711507 1296 Karp_01187 yes yes 0 1 0 1 By MS/MS 1 31.938 32.287 2 0.016887 9005 20181213_JW_Orientia_Karp_1_2 139.68 53.207 0 0 0 0 0 0 0 0 0 5889 1296 5113 36159 23201 23201 716 1 LRPEAQPHPSAGPK Unmodified 1483.7896 0.7895603 423 Q68DX9;G5E9E7;A9CQZ8;G3V1L9;Q07157-2;Q07157;B4DZK4;Q6MZU1 DKFZp686M05161;TJP1;DKFZp686A1195 Tight junction protein ZO-1 yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 21.692 21.943 3 0.016129 4729 20181213_JW_Orientia_Karp_1_1 89.747 58.025 5010000 1204000 993390 1985000 0 0 236340 591290 0 5890 423 5114 36160;36161;36162;36163;36164 23202 23202 1 LRPYYNNMGIYIISTSK Unmodified 2032.0452 0.045182639 1228 Karp_00895 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 56.152 56.422 3 1.2228E-11 22631 20181213_JW_Orientia_Karp_1_3 184.87 140.82 179880000 55204000 41258000 52265000 18289000 0 12863000 0 0 5891 1228 5115 36165;36166;36167;36168;36169 23203;23204;23205;23206;23207;23208;23209 23207 7 LRPYYNNMGIYIISTSK Deamidation (NQ) 2033.0292 0.029198224 1228 Karp_00895 yes yes 0 1 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 59.539 59.769 3 5.7519E-05 24882 20181213_JW_Orientia_Karp_1_3 147.64 87.393 53828000 36172000 0 9015300 981220 3521000 4138500 0 0 5892 1228 5115 36170;36171;36172;36173;36174 23210 23210 631 1 LRQEEPQSLQAAVR Unmodified 1623.8693 0.86926718 1640 P29590-4;P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;Q9BZY1;H3BVD2;H3BT57;Q59H09;Q15156;P29590-14;P29590-10;P29590-12;P29590-13;P29590-11;H3BT29;Q59GQ8;Q05835;H3BUJ5;A4VCI9 PML;PML-RAR;promyelocytic leukemia protein Protein PML yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 34.978 35.343 3 0.0016409 10380 20181213_JW_Orientia_Karp_1_3 129.76 80.463 55342000 28340000 0 15976000 0 0 0 3515100 7510800 5893 1640 5116 36175;36176;36177;36178 23211;23212;23213 23212 3 LRSEIDNVK Unmodified 1072.5877 0.58767259 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 24.89 25.263 3 0.018054 4884 20181213_JW_Orientia_Karp_2_2 92.239 40.971 26768000 1177000 7165700 1229300 7989600 4247800 0 3004100 1954300 + 5894 995;996 5117 36179;36180;36181;36182;36183;36184;36185 23214;23215;23216 23214 3 LRSEIDNVKK Unmodified 1200.6826 0.68263561 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 20.166 20.441 3 0.00081659 3912 20181213_JW_Orientia_Karp_3_1 144.77 47.203 50677000 0 11155000 7705000 14474000 0 8547700 8795100 0 + 5895 995;996 5118 36186;36187;36188;36189;36190;36191 23217;23218;23219;23220;23221 23221 5 LSAASTWLEDEGVGATTVMLK Oxidation (M) 2194.0827 0.082749937 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;B7Z602 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 1 0 By MS/MS 1 65.355 65.453 2 0.0032444 28380 20181213_JW_Orientia_Karp_1_3 97.2 68.568 1739100 0 0 1739100 0 0 0 0 0 5896 545 5119 36192 23222 23222 342 1 LSAILFKLQFEEQVNNIK 3 Deamidation (NQ) 2136.1354 0.13543743 621 B7ZB09;B4DPV3;Q9NSV4-2;Q9NSV4-1;Q9NSV4-7;Q9NSV4-6;Q9NSV4-5;Q9NSV4-4;Q9NSV4 DIAPH3 Protein diaphanous homolog 3 yes no 0 3 0 1 By MS/MS 1 70.87 71.02 3 0.039569 25868 20181213_JW_Orientia_Karp_3_1 48.391 21.61 5675500 0 0 0 0 0 0 5675500 0 5897 621 5120 36193 23223 23223 1547 0 LSALGPGGLNR Unmodified 1053.5931 0.59309232 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.974 43.334 2 0.00026187 14526 20181213_JW_Orientia_Karp_1_3 152.06 88.527 567320000 134860000 187790000 97714000 47014000 0 0 90334000 9606800 5898 1170 5121 36194;36195;36196;36197;36198;36199;36200 23224;23225;23226;23227;23228;23229;23230 23226 7 LSCNQDLNYFK Unmodified 1400.6395 0.63945017 1080 Karp_00104 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 46.785 47.087 2 0.0001023 16641 20181213_JW_Orientia_Karp_1_3 160.77 114.36 103410000 36691000 23593000 18366000 0 4487700 8770000 2539500 8963900 5899 1080 5122 36201;36202;36203;36204;36205;36206;36207 23231;23232;23233;23234;23235;23236 23233 6 LSDLAQK Unmodified 773.42832 0.42831841 1403 Karp_02211 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 24.965 25.24 2 0.022372 5683 20181213_JW_Orientia_Karp_3_1 99.375 25.12 23161000 5664900 10353000 2851300 0 0 0 4291600 0 5900 1403 5123 36208;36209;36210;36211 23237;23238 23238 2 LSDLLAPISEQIK Unmodified 1425.8079 0.80789571 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;Q01518;Q5T0R1;Q01518-2;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R9;B4DNY3 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 64.224 64.44 2 3.945E-07 28178 20181213_JW_Orientia_Karp_1_2 181.4 103.29 131890000 54234000 29531000 13562000 0 17269000 10822000 156090 6314100 5901 498 5124 36212;36213;36214;36215;36216;36217;36218 23239;23240;23241;23242;23243;23244;23245 23240 7 LSDLLNDSIDPELALHPK Unmodified 1989.0419 0.0418714 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 1 2 63.887 64.096 2;3 7.9964E-84 27920 20181213_JW_Orientia_Karp_1_2 296.22 239.27 1359700000 427750000 196110000 271600000 3171000 202040000 187450000 329110 71274000 5902 1178 5125 36219;36220;36221;36222;36223;36224;36225;36226;36227;36228;36229;36230;36231;36232 23246;23247;23248;23249;23250;23251 23247 6 LSDLLNDSIDPELALHPK Deamidation (NQ) 1990.0259 0.025886985 1178 Karp_00644 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 2 3 2 65.938 66.157 3 2.6027E-14 28765 20181213_JW_Orientia_Karp_1_2 195.28 161.48 606220000 136300000 107910000 99291000 7450900 113860000 59439000 73124000 8850900 5903 1178 5125 36233;36234;36235;36236;36237;36238;36239;36240;36241;36242;36243;36244;36245;36246;36247;36248;36249 23252;23253;23254;23255;23256;23257;23258;23259;23260;23261;23262;23263 23254 589 12 LSDLVIVTDQDSGNEDPAAIR Unmodified 2227.0968 0.096820096 1072 Karp_00045 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 2 62.663 62.846 2 0.00014952 27143 20181213_JW_Orientia_Karp_1_2 154.69 110.18 21798000 6278000 5937700 9582300 0 0 0 0 0 5904 1072 5126 36250;36251;36252;36253 23264;23265;23266 23265 3 LSDLVIVTDQDSGNEDPAAIRK Unmodified 2355.1918 0.19178311 1072 Karp_00045 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 53.01 53.26 3 0.0018739 21344 20181213_JW_Orientia_Karp_1_1 94.845 69.336 47387000 8937100 8184600 16414000 5540000 5177500 3133900 0 0 5905 1072 5127 36254;36255;36256;36257;36258;36259 23267;23268;23269;23270 23267 4 LSDSEHVITAYISGK Unmodified 1618.8203 0.82025131 1136 Karp_00448 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.824 49.126 3 0.00097769 17971 20181213_JW_Orientia_Karp_1_3 160.87 127.67 264720000 43277000 67000000 48888000 37192000 26508000 20223000 0 21637000 5906 1136 5128 36260;36261;36262;36263;36264;36265;36266 23271;23272;23273;23274;23275;23276;23277 23273 7 LSDVMQSLLK Unmodified 1132.6162 0.61619553 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 1 1 58.587 58.875 2 4.5907E-06 24379 20181213_JW_Orientia_Karp_1_3 172.98 103.35 133900000 35511000 24609000 39515000 5076600 11258000 17481000 445440 0 5907 1366 5129 36267;36268;36269;36270;36271;36272;36273;36274;36275 23278;23279;23280;23281;23282;23283;23284 23280 7 LSDVTLVPVSCSELEK Unmodified 1774.9023 0.90226638 1536 V9HW53;O95865 HEL-S-277;DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 60.322 60.635 2 0.0026597 20982 20181213_JW_Orientia_Karp_3_1 113.61 54.933 21827000 5706100 0 0 3740700 4235000 0 8145000 0 5908 1536 5130 36276;36277;36278;36279 23285 23285 1 LSDYNAQVLAADK Unmodified 1406.7042 0.70415892 1317 Karp_01279 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 44.992 45.292 2 3.5933E-26 16224 20181213_JW_Orientia_Karp_1_1 240.65 172.52 313720000 125810000 92867000 76151000 0 0 0 18890000 0 5909 1317 5131 36280;36281;36282;36283 23286;23287;23288;23289;23290 23286 5 LSEAEFEVLK Unmodified 1163.6074 0.60740498 1466;1549 L8E853;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.196 54.379 2 6.1028E-05 21443 20181213_JW_Orientia_Karp_1_3 153.24 69.246 99289000 32934000 19687000 46667000 0 0 0 0 0 5910 1466;1549 5132 36284;36285;36286 23291;23292;23293 23293 3 LSEAIENFDLAIK Unmodified 1461.7715 0.7715102 1085 Karp_00200 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 63.547 63.807 2 0.00031409 24153 20181213_JW_Orientia_Karp_3_2 158.56 95.28 88380000 24119000 33969000 20495000 3628400 0 0 408980 5759600 5911 1085 5133 36287;36288;36289;36290;36291;36292 23294;23295 23295 2 LSEDYGVLK Unmodified 1022.5284 0.52842638 321 A6NIW5;B4DF70;V9HW12;P32119 PRDX2;HEL-S-2a Peroxiredoxin-2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 43.894 44.224 2 0.0026355 15086 20181213_JW_Orientia_Karp_1_3 115.49 75.848 33327000 8755400 9600600 9349800 956720 0 0 4664300 0 5912 321 5134 36293;36294;36295;36296;36297 23296 23296 1 LSEGVTISYK Unmodified 1095.5812 0.58119023 1559 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 0 By MS/MS 1 43.058 43.058 2 0.0037421 15001 20181213_JW_Orientia_Karp_1_1 134.77 105.62 0 0 0 0 0 0 0 0 0 5913 1559 5135 36298 23297 23297 1 LSESAHGYFVK Unmodified 1236.6139 0.61388734 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 33.408 33.678 3 0.040031 9716 20181213_JW_Orientia_Karp_1_2 65.278 26.524 97797000 37543000 32114000 20293000 4679400 3167100 0 0 0 5914 1169 5136 36299;36300;36301;36302;36303 23298;23299;23300 23299 3 LSEWLDNHLSDLVK Unmodified 1667.8519 0.85188578 1391 Karp_02140 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 61.099 61.282 2;3 0.0069343 21279 20181213_JW_Orientia_Karp_3_1 115.57 68.845 108710000 65808000 18143000 24755000 0 0 0 0 0 5915 1391 5137 36304;36305;36306;36307 23301;23302;23303 23303 3 LSFEAQDYLK Unmodified 1212.6027 0.60265396 1400 Karp_02191 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 56.259 56.581 2 1.6827E-17 23496 20181213_JW_Orientia_Karp_1_1 237.44 144.3 2399400000 858280000 305030000 512070000 275560000 211650000 232510000 4324200 0 5916 1400 5138 36308;36309;36310;36311;36312;36313;36314 23304;23305;23306;23307;23308;23309;23310 23304 6 LSFIDDVSISMVPVTDSDYCDVLVK Oxidation (M) 2832.3449 0.34491422 1444 Karp_02422 yes yes 0 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 74.487 74.513 3 0.022443 27742 20181213_JW_Orientia_Karp_3_1 54.626 29.982 25450000 0 11517000 0 0 6993400 2076800 4862500 0 5917 1444 5139 36315;36316;36317;36318 23311 23311 1046 1 LSFQHDPETSVLVLR Unmodified 1739.9206 0.92063405 111 B4DIW2;F5H6X6;B4DSM6;A0A024R592;E9PKU7;B4DZ53;V9HWJ0;B4DJ30;Q14697;Q14697-2;Q9BS14 GANAB;HEL-S-164nA Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 55.007 55.323 3 0.00016858 20580 20181213_JW_Orientia_Karp_2_3 180.3 140.35 153200000 31132000 51329000 25540000 6525300 24938000 13634000 0 105100 5918 111 5140 36319;36320;36321;36322;36323;36324;36325 23312;23313;23314;23315;23316;23317 23317 6 LSGGFGPQK Unmodified 889.46577 0.46576654 2050 yes yes 0 0 0 0 By MS/MS 2 31.371 31.721 2 0.037169 8711 20181213_JW_Orientia_Karp_1_2 73.616 4.2329 201050000 0 201050000 0 0 0 0 0 0 + 5919 2050 5141 36326;36327 23318 23318 1 LSGGGYPR Unmodified 805.40825 0.40825167 1226 Karp_00893 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 24.769 25.177 2 0.0086706 4852 20181213_JW_Orientia_Karp_2_2 108.09 47.406 71617000 11163000 0 7029600 13470000 8711700 5367700 19601000 6273500 5920 1226 5142 36328;36329;36330;36331;36332;36333;36334;36335 23319;23320;23321;23322 23320 4 LSGMTGTAMTEATELK 2 Oxidation (M) 1671.7695 0.76953764 1374 Karp_02110 yes yes 0 0 2 0 By MS/MS By matching 1 1 36.298 36.572 2 0.00016954 11107 20181213_JW_Orientia_Karp_1_2 142.76 77.044 5879600 0 3179600 2700000 0 0 0 0 0 5921 1374 5143 36336;36337 23323;23324 23324 962;963 2 LSGSHSQGVAYPVR Unmodified 1456.7423 0.74227576 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 29.329 29.716 3 0.0021882 7709 20181213_JW_Orientia_Karp_1_3 105.95 74.425 155080000 36811000 45408000 48790000 6158700 3174100 0 11379000 3354700 5922 195 5144 36338;36339;36340;36341;36342;36343;36344 23325;23326;23327;23328 23327 4 LSGSNPYTTVTPQIINSK Unmodified 1919 6.5851E-06 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 53.946 54.267 2 5.81E-101 21955 20181213_JW_Orientia_Karp_1_1 305.98 233.69 172000000 42187000 35396000 72590000 8713800 5742100 5913600 1461800 0 5923 1509 5145 36345;36346;36347;36348;36349;36350;36351 23329;23330;23331;23332;23333 23329 5 LSGSNPYTTVTPQIINSK Deamidation (NQ) 1919.984 0.98402217 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.882 56.215 2 5.9284E-23 22865 20181213_JW_Orientia_Karp_1_2 211.82 143.28 138820000 27880000 61661000 36979000 5626400 0 4266200 2406200 0 5924 1509 5145 36352;36353;36354;36355;36356;36357 23334;23335 23334 1014 2 LSHYYNLQGQK Unmodified 1349.6728 0.67279921 1211 Karp_00873 yes yes 0 0 0 0 By MS/MS By matching 1 1 29.504 29.729 3 0.010774 8176 20181213_JW_Orientia_Karp_1_1 79.23 34.931 62853000 4909400 0 0 57943000 0 0 0 0 5925 1211 5146 36358;36359 23336 23336 1 LSIDALINQLTEISK Unmodified 1656.9298 0.92980175 1434 Karp_02392 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.311 76.305 2 1.4122E-08 35936 20181213_JW_Orientia_Karp_1_2 223.22 133.39 76606000 7327600 18442000 28045000 3724500 3893000 2878400 10413000 1883900 5926 1434 5147 36360;36361;36362;36363;36364;36365;36366;36367 23337;23338;23339;23340;23341;23342;23343 23337 7 LSIHNFGAEDVFSIK Unmodified 1675.857 0.85697116 1363 Karp_01854 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 59.351 59.613 3 0.0010084 25096 20181213_JW_Orientia_Karp_1_2 118.21 81.197 62294000 37932000 8180200 10000000 0 4228500 0 0 1952400 5927 1363 5148 36368;36369;36370;36371;36372 23344;23345;23346;23347 23344 4 LSISETYDLK Unmodified 1167.6023 0.60231961 803 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.093 50.4 2 2.8597E-25 17857 20181213_JW_Orientia_Karp_2_3 253.05 170.3 1027400000 108970000 167430000 132890000 292010000 155880000 168810000 1439100 0 + 5928 803 5149 36373;36374;36375;36376;36377;36378;36379 23348;23349;23350;23351;23352;23353 23353 6 LSISIFQR Unmodified 962.55492 0.5549159 1175 Karp_00629 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.763 58.013 2 7.8623E-05 22046 20181213_JW_Orientia_Karp_2_1 201.49 77.145 254810000 97429000 37631000 44336000 5065700 28645000 41706000 0 0 5929 1175 5150 36380;36381;36382;36383;36384;36385 23354;23355;23356;23357;23358;23359;23360 23358 7 LSLAQEDLISNR Unmodified 1357.7201 0.72014333 1801 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 0 By MS/MS By matching 1 1 52.689 52.963 2 0.030967 20647 20181213_JW_Orientia_Karp_1_2 107.34 53.339 28852000 0 12013000 16839000 0 0 0 0 0 5930 1801 5151 36386;36387 23361 23361 0 LSLDGQNIYNACCTLR Unmodified 1896.8822 0.88221641 1633 P26599;P26599-2;P26599-3;Q59H49;K7EK45 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS 1 56.447 56.447 2 0.011036 23405 20181213_JW_Orientia_Karp_1_1 106.58 66.424 0 0 0 0 0 0 0 0 0 5931 1633 5152 36388 23362 23362 1 LSLEEFIR Unmodified 1005.5495 0.54949617 486 O75544;Q6FGY1;Q5U068;B2RB70;P84074;P61601;P37235 HPCAL1;NCALD;HPCA Neuron-specific calcium-binding protein hippocalcin;Neurocalcin-delta;Hippocalcin-like protein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 63.958 64.135 2 0.0041872 25160 20181213_JW_Orientia_Karp_2_3 141.52 31.11 18002000 4219800 1046500 4535900 0 3093000 4106100 0 1000900 5932 486 5153 36389;36390;36391;36392;36393;36394;36395;36396 23363;23364;23365;23366;23367 23366 5 LSLEGDHSTPPSAYGSVK Unmodified 1843.8952 0.89520716 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YKS4;B4DNH8;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 41.442 41.682 3 0.0081826 13692 20181213_JW_Orientia_Karp_1_2 79.326 51.991 1767900000 723060000 870840000 0 163120000 9752800 1164500 0 0 5933 124 5154 36397;36398;36399;36400;36401 23368 23368 1 LSLEYHK Unmodified 888.47052 0.47051757 1336 Karp_01409 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 30.257 30.78 2 0.030664 8408 20181213_JW_Orientia_Karp_1_2 88.643 20.158 45225000 0 18582000 0 8631900 5722200 0 4753300 7536000 5934 1336 5155 36402;36403;36404;36405;36406;36407 23369;23370 23369 2 LSLNIDPDAK Unmodified 1084.5764 0.57643921 1598 Q5CAQ5;V9HWP2;P14625;B4DU71;B4DHT9;H0YIV0 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.093 51.395 2 1.5449E-06 20058 20181213_JW_Orientia_Karp_1_1 182.39 107.35 442840000 138730000 102510000 100080000 43276000 26415000 31550000 0 280260 5935 1598 5156 36408;36409;36410;36411;36412;36413;36414 23371;23372;23373;23374;23375;23376 23371 6 LSNFIHNLIIGGAK Unmodified 1495.8511 0.85109792 1125 Karp_00328 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 2 2 1 1 56.186 56.487 2;3 0.0018158 23122 20181213_JW_Orientia_Karp_1_2 166.62 126.6 166040000 33456000 61305000 22622000 4345600 15016000 26374000 1628500 1292800 5936 1125 5157 36415;36416;36417;36418;36419;36420;36421;36422;36423;36424;36425;36426;36427 23377;23378;23379;23380;23381 23378 5 LSNHISSLFR Unmodified 1172.6302 0.63020611 391 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;P11413-3;P11413-2;Q0PHS1;E7EM57;E7EUI8;B4DYA7;E9PD92;A2IBT6;B6ZHS6 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 By matching By MS/MS 1 1 41.873 42.048 3 0.015986 14009 20181213_JW_Orientia_Karp_1_2 71.153 37.409 7181600 4217400 2964200 0 0 0 0 0 0 5937 391 5158 36428;36429 23382 23382 1 LSNIELR Unmodified 843.48142 0.48141661 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 38.591 38.907 2 0.011669 12162 20181213_JW_Orientia_Karp_1_3 118.74 22.553 272250000 88026000 90861000 69443000 8864200 2406400 0 12646000 0 5938 1374 5159 36430;36431;36432;36433;36434;36435 23383;23384;23385;23386;23387 23385 5 LSNIFVIGK Unmodified 989.59097 0.59096706 442 Q96IR1;Q53HV1;B2R491;P62701 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 0 0 0 0 By MS/MS By MS/MS 1 1 56.545 56.945 2 0.012561 21422 20181213_JW_Orientia_Karp_2_1 89.029 56.03 9693100 0 0 0 1946300 0 7746800 0 0 5939 442 5160 36436;36437 23388;23389 23388 2 LSNLDAINKR Unmodified 1142.6408 0.6407708 1348 Karp_01524 yes yes 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 31.056 31.46 3 0.03459 7482 20181213_JW_Orientia_Karp_3_2 59.426 14.404 7716700 5225700 0 0 0 360920 0 1436500 693530 5940 1348 5161 36438;36439;36440;36441 23390 23390 1 LSNNEIEVR Unmodified 1072.5513 0.55128709 1345 Karp_01521 yes yes 0 0 0 0 By MS/MS 1 34.528 34.528 2 0.034081 10586 20181213_JW_Orientia_Karp_1_1 75.509 28.846 2923400 2923400 0 0 0 0 0 0 0 5941 1345 5162 36442 23391 23391 1 LSNNTFLLK Unmodified 1048.5917 0.59169534 1361 Karp_01814 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 48.114 48.426 2 0.0091261 15701 20181213_JW_Orientia_Karp_3_2 95.815 13.065 8038200 1074000 0 0 1344500 559200 1009000 0 4051500 5942 1361 5163 36443;36444;36445;36446;36447 23392;23393 23393 2 LSNTEDVK Unmodified 904.45018 0.45017606 1428 Karp_02381 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 20.414 20.782 2 0.040956 4123 20181213_JW_Orientia_Karp_1_2 76.478 19.3 3646500 988490 1256200 0 606870 79398 0 470550 245060 5943 1428 5164 36448;36449;36450;36451;36452;36453 23394 23394 1 LSNVQDLSELR Unmodified 1272.6674 0.66737948 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.739 49.041 2 4.5605E-13 17912 20181213_JW_Orientia_Karp_1_3 227.36 118.79 229160000 49190000 64699000 38398000 30884000 12913000 14985000 0 18087000 5944 1162 5165 36454;36455;36456;36457;36458;36459;36460 23395;23396;23397;23398;23399;23400;23401 23397 7 LSPEELLLR Unmodified 1068.6179 0.61791009 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;Q59GX5;V9HWJ7;Q53FI1;A0A024RDT4;P13796;Q14651;C9JAM8 PLS3;HEL-S-37;LCP1;PLS1 Plastin-3;Plastin-2;Plastin-1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 62.327 62.563 2 0.011529 27307 20181213_JW_Orientia_Karp_1_1 91.069 19.377 11090000 4392400 0 5288300 0 0 0 0 1409400 5945 623 5166 36461;36462;36463 23402 23402 1 LSPFMADIR Unmodified 1048.5376 0.53755128 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 55.83 56.005 2 0.036274 22403 20181213_JW_Orientia_Karp_1_3 74.165 33.283 66863000 46565000 0 15044000 0 1679800 3574000 0 0 5946 1615 5167 36464;36465;36466;36467 23403 23403 1 LSPPYSSPQEFAQDVGR Unmodified 1876.8955 0.89554151 474 B2R8R5;Q13263;Q13263-2;M0R0K9 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 56.673 56.856 2 0.0029478 22953 20181213_JW_Orientia_Karp_1_3 114.31 71.521 69014000 20476000 22110000 26428000 0 0 0 0 0 5947 474 5168 36468;36469;36470 23404;23405;23406 23406 3 LSPTVILDNQVTYVPGGK Unmodified 1900.0306 0.030578432 1789 Q13201;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.792 63.993 2 3.3353E-12 27497 20181213_JW_Orientia_Karp_1_3 189.99 123.45 49102000 9981400 7036300 17948000 676350 5664200 5846500 0 1948800 5948 1789 5169 36471;36472;36473;36474;36475;36476;36477 23407;23408;23409;23410;23411 23408 5 LSQLEEHLSQLQDNPPQEK Unmodified 2232.1022 0.10223983 118 A0A024R5M9;Q4LE64;Q14980-2;Q14980;Q14980-4;Q14980-3;A0A024R5G4;Q14980-5;F5H4J1;A8K394;Q3SYK8;F5H6Y5 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS 1 46.382 46.732 3 0.033287 16668 20181213_JW_Orientia_Karp_1_2 67.655 31.824 0 0 0 0 0 0 0 0 0 5949 118 5170 36478 23412 23412 1 LSQYFLPLLK Unmodified 1220.7169 0.71689585 1434 Karp_02392 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 69.409 69.553 2 3.0661E-07 31393 20181213_JW_Orientia_Karp_1_2 192.91 117.86 77885000 5913500 10658000 14136000 0 11841000 6830700 21128000 7377600 5950 1434 5171 36479;36480;36481;36482;36483;36484;36485 23413;23414;23415;23416;23417;23418;23419 23414 7 LSSEAQQLFNLTK Unmodified 1477.7777 0.77765821 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.012 58.262 2 4.2409E-34 22156 20181213_JW_Orientia_Karp_2_1 241.39 161.9 299960000 70973000 72397000 57945000 37108000 39888000 21652000 0 0 5951 1449 5172 36486;36487;36488;36489;36490;36491 23420;23421;23422;23423;23424;23425 23423 6 LSSEMNTSTVNSAR Oxidation (M) 1511.6886 0.68858521 1613 P20700;E9PBF6;Q6DC98;B4DZT3 LMNB1 Lamin-B1 yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.465 25.81 2 0.00054509 6423 20181213_JW_Orientia_Karp_1_1 142.89 90.968 15580000 1802800 5150300 1906400 1148100 1779300 1074300 2200600 517810 5952 1613 5173 36492;36493;36494;36495;36496;36497;36498;36499 23426;23427;23428;23429;23430;23431;23432 23426 1235 7 LSSGETLESQISQDIAVIGENIQVSR Unmodified 2772.4141 0.41413149 1346 Karp_01522 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 74.961 74.986 2;3 2.684E-11 34959 20181213_JW_Orientia_Karp_1_2 146.75 92.79 397140000 148940000 95716000 131060000 0 9032600 0 12391000 0 5953 1346 5174 36500;36501;36502;36503;36504;36505;36506;36507 23433;23434;23435 23433 3 LSSGETLESQISQDIAVIGENIQVSR Deamidation (NQ) 2773.3981 0.39814707 1346 Karp_01522 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 75.015 75.029 3 0.0010816 27971 20181213_JW_Orientia_Karp_3_1 126.93 87.984 0 0 0 0 0 0 0 0 0 5954 1346 5174 36508;36509;36510 23436;23437;23438 23438 791;1841;1842 3 LSSGSNEYLNWISK Unmodified 1596.7784 0.77838649 1269 Karp_01077 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 58.382 58.702 2 0.00050128 24518 20181213_JW_Orientia_Karp_1_2 164.53 99.25 139800000 46380000 18801000 35270000 9749000 12233000 10749000 690090 5924400 5955 1269 5175 36511;36512;36513;36514;36515;36516;36517;36518 23439;23440;23441;23442;23443;23444;23445 23440 7 LSSHSPNLQNIPIR Unmodified 1574.8529 0.85288884 1329 Karp_01364 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 42.037 42.337 3 0.0097984 14161 20181213_JW_Orientia_Karp_1_2 80.746 29.02 53809000 19032000 9946400 11300000 3239700 4107300 0 6183900 0 5956 1329 5176 36519;36520;36521;36522;36523;36524 23446;23447;23448 23447 3 LSSLINTIINISNSTADNSNSNTQK Unmodified 2648.3253 0.32531648 1061 Karp_00005 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 72.039 72.108 3 3.2498E-15 33037 20181213_JW_Orientia_Karp_1_2 168.25 129.83 81896000 22671000 20859000 14551000 0 0 6528600 17287000 0 5957 1061 5177 36525;36526;36527;36528;36529 23449;23450;23451;23452 23450 4 LSSLINTIINISNSTADNSNSNTQK Deamidation (NQ) 2649.3093 0.30933207 1061 Karp_00005 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 73.461 73.513 3 0.00016054 27300 20181213_JW_Orientia_Karp_3_1 110.13 82.589 31098000 0 0 15604000 2389200 0 0 7612500 5491400 5958 1061 5177 36530;36531;36532;36533 23453;23454 23454 394;395 2 LSSLIQAMLPTQTLDK Oxidation (M) 1773.9546 0.9546363 1262 Karp_01022 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 61.351 61.659 2 1.6482E-06 26786 20181213_JW_Orientia_Karp_1_1 170.95 117.38 38734000 9681900 12971000 6073300 1610000 3177300 2610800 945910 1663300 5959 1262 5178 36534;36535;36536;36537;36538;36539;36540;36541 23455;23456;23457;23458;23459;23460;23461 23455 824 7 LSSPATLNSR Unmodified 1044.5564 0.55637247 787 CON__P00761 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 5 31.504 31.903 2 0.00044148 8980 20181213_JW_Orientia_Karp_2_1 136.52 57.064 21020000000 5037900000 2622400000 3272500000 7069800000 5203100 37485000 2441400000 533840000 + 5960 787 5179 36542;36543;36544;36545;36546;36547;36548;36549;36550;36551;36552;36553;36554;36555;36556;36557;36558;36559;36560;36561 23462;23463;23464;23465;23466;23467;23468;23469;23470;23471;23472;23473 23465 12 LSSPATLNSR Deamidation (NQ) 1045.5404 0.54038805 787 CON__P00761 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 36.459 36.81 2 0.0027996 10934 20181213_JW_Orientia_Karp_2_3 117.71 42.516 4167500000 1198100000 913360000 638410000 2824000 512890000 258350000 539740000 103820000 + 5961 787 5179 36562;36563;36564;36565;36566;36567;36568;36569;36570;36571;36572;36573;36574;36575 23474;23475;23476;23477;23478;23479;23480 23479 264 7 LSVISPEVMK Unmodified 1101.6104 0.61038187 1075 Karp_00051 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.231 52.532 2 0.016893 19096 20181213_JW_Orientia_Karp_2_3 88.177 40.979 114370000 41162000 25956000 21225000 9360100 3842600 12691000 0 132620 5962 1075 5180 36576;36577;36578;36579;36580;36581;36582 23481;23482;23483;23484 23484 4 LSVISPEVMK Oxidation (M) 1117.6053 0.60529649 1075 Karp_00051 yes yes 0 0 1 0 By MS/MS By MS/MS 1 1 45.459 45.535 2 0.014133 16304 20181213_JW_Orientia_Karp_1_1 112.11 45.837 0 0 0 0 0 0 0 0 0 5963 1075 5180 36583;36584 23485;23486 23485 596 2 LSVYAALQR Unmodified 1019.5764 0.57637963 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 48.77 49.063 2 0.0013667 17878 20181213_JW_Orientia_Karp_1_3 126.52 53.274 14074000 4523900 0 3492300 2707600 745520 1208300 0 1396000 5964 1803 5181 36585;36586;36587;36588;36589;36590 23487 23487 1 LSYDLQSK Unmodified 952.48656 0.48656157 1438 Karp_02403 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 37.899 38.249 2 0.0063515 11563 20181213_JW_Orientia_Karp_3_1 115.49 56.679 88173000 20345000 25649000 27944000 3974300 0 0 10261000 0 5965 1438 5182 36591;36592;36593;36594;36595;36596 23488;23489;23490;23491 23491 4 LSYNTASNK Unmodified 996.48762 0.4876242 261 A0A024RDH8;P49207 RPL34 60S ribosomal protein L34 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 23.886 24.17 2 0.00068468 5395 20181213_JW_Orientia_Karp_1_3 152.06 44.165 12807000 1643800 3957700 1576600 854890 1154200 0 3620100 0 5966 261 5183 36597;36598;36599;36600;36601;36602 23492;23493;23494;23495 23494 4 LSYTQLLR Unmodified 992.56548 0.56548059 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;Q96IE3 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 51.98 52.23 2 0.0042066 20294 20181213_JW_Orientia_Karp_1_2 137.9 50.582 48146000 16627000 20760000 4511300 3452300 1533400 1261800 0 0 5967 1803 5184 36603;36604;36605;36606;36607;36608 23496;23497;23498 23497 3 LTAEFEEAQTSACR Unmodified 1611.7199 0.71988533 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 42.028 42.479 2 0.0010347 13598 20181213_JW_Orientia_Karp_3_1 134.99 85.639 3572000 0 0 0 0 0 278930 3293100 0 5968 279 5185 36609;36610;36611 23499;23500 23499 2 LTCFELAPK Unmodified 1077.5529 0.55286699 838 D3DUZ3;Q16666-2;Q16666;Q16666-3;Q16666-6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 48.899 49.252 2 0.0208 18187 20181213_JW_Orientia_Karp_1_3 87.696 15.819 11064000 0 3308600 5135000 0 0 950090 0 1670700 5969 838 5186 36612;36613;36614;36615 23501 23501 1 LTDCVVMR Oxidation (M) 1008.4732 0.47323646 191 A0A024RA27;A0A024RA61;P22626-2;P22626;I6L957 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 0 By MS/MS 1 31.789 32.44 2 0.034714 8790 20181213_JW_Orientia_Karp_3_1 92.47 46.045 0 0 0 0 0 0 0 0 0 5970 191 5187 36616 23502 23502 1 LTDELTSIISNYEGK Unmodified 1681.841 0.84104633 1254 Karp_00934 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.396 67.573 2 1.1389E-48 26547 20181213_JW_Orientia_Karp_2_2 256.47 215.75 407170000 153410000 73082000 123420000 0 27544000 11071000 0 18642000 5971 1254 5188 36617;36618;36619;36620;36621;36622;36623 23503;23504;23505;23506;23507;23508 23505 6 LTDQVMQNPR Oxidation (M) 1216.587 0.58702067 239 E9PNW0;E9PJJ2;E9PS34;E9PNJ7;C9J6D1;A0A024RCC9;B7ZAK9;B7ZB83;B4DS05;Q99733;Q99733-2;E9PKI2;E9PP22;E9PKT8;C9JZI7;B7ZAC7;C9J1B1 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 26.937 27.31 2 6.2033E-07 6667 20181213_JW_Orientia_Karp_1_2 189.18 115.01 21087000 3613700 4445900 5809100 948720 1284000 0 4055400 930280 5972 239 5189 36624;36625;36626;36627;36628;36629;36630 23509;23510;23511;23512;23513;23514 23510 176 6 LTEFENLTIAK Unmodified 1277.6867 0.68671794 1355 Karp_01675 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.878 55.255 2 0.010914 20433 20181213_JW_Orientia_Karp_2_1 94.409 29.252 29043000 11191000 0 9624300 3489600 0 4188600 381680 167570 5973 1355 5190 36631;36632;36633;36634;36635;36636 23515 23515 1 LTEHFIGTLGYTIK Unmodified 1591.861 0.86099391 1444 Karp_02422 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 53.647 53.897 3 0.0049915 21130 20181213_JW_Orientia_Karp_1_3 94.547 69.493 88557000 43615000 0 14178000 8791600 6664800 15307000 0 0 5974 1444 5191 36637;36638;36639;36640;36641 23516;23517;23518;23519;23520 23518 5 LTEMETLQSQLMAEK 2 Oxidation (M) 1782.838 0.83795156 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 3 2 2 1 45.609 45.909 2;3 5.294E-114 14401 20181213_JW_Orientia_Karp_3_2 327.62 220.07 197060000 47890000 55175000 40091000 12815000 12917000 5650300 12592000 9928800 5975 47 5192 36642;36643;36644;36645;36646;36647;36648;36649;36650;36651;36652;36653;36654;36655;36656;36657;36658;36659 23521;23522;23523;23524;23525;23526;23527;23528;23529;23530;23531;23532 23532 45;46 9 LTEMETLQSQLMAEK Oxidation (M) 1766.843 0.84303694 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 52.185 52.481 2 4.5028E-156 19100 20181213_JW_Orientia_Karp_1_3 348.97 220.76 465990000 211010000 118450000 92053000 4466700 15013000 15111000 9895100 0 5976 47 5192 36660;36661;36662;36663;36664;36665;36666;36667;36668;36669;36670;36671;36672;36673 23533;23534;23535;23536;23537;23538;23539;23540;23541;23542;23543;23544 23537 45;46 12 LTEMETLQSQLMAEK Unmodified 1750.8481 0.84812231 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 59.18 59.5 2 4.5695E-179 24694 20181213_JW_Orientia_Karp_1_3 364.34 268.72 232100000 63675000 68583000 81615000 3793100 5340600 3458700 75959 5559400 5977 47 5192 36674;36675;36676;36677;36678;36679;36680;36681 23545;23546;23547;23548;23549;23550;23551;23552 23547 7 LTEQTVNQK Unmodified 1059.556 0.55603811 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 22.082 22.402 2 5.0738E-09 4552 20181213_JW_Orientia_Karp_1_3 214.23 109.48 17368000 0 8629500 3692000 1643100 983870 0 2419800 0 5978 1162 5193 36682;36683;36684;36685;36686 23553;23554;23555;23556 23554 4 LTEVPVEPVLTVHPESK Unmodified 1873.0197 0.019679395 398 A8K964;Q9H307-2;Q9H307;B4E392;B4DTD4 PNN Pinin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.637 54.01 3 0.0050315 21872 20181213_JW_Orientia_Karp_1_1 88.706 44.25 106400000 39050000 28350000 18592000 7247900 0 12763000 227620 173280 5979 398 5194 36687;36688;36689;36690;36691;36692;36693 23557;23558;23559 23557 3 LTFDSSFSPNTGK Unmodified 1399.662 0.66195975 1616 P21796;C9JI87 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1 1 51.25 51.574 2 1.9718E-11 19750 20181213_JW_Orientia_Karp_1_3 203.03 139.5 227030000 52880000 60497000 44302000 26562000 17581000 16395000 4544200 4264900 5980 1616 5195 36694;36695;36696;36697;36698;36699;36700;36701;36702 23560;23561;23562;23563;23564;23565;23566;23567;23568;23569 23564 10 LTFDSSFSPNTGKK Unmodified 1527.7569 0.75692277 1616 P21796;C9JI87 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 42.536 42.803 3 0.027682 13344 20181213_JW_Orientia_Karp_2_2 63.76 30.703 108970000 31305000 27399000 29430000 0 3600600 1346500 15883000 0 5981 1616 5196 36703;36704;36705;36706;36707;36708 23570;23571;23572 23572 3 LTFNIVDSGTVAQDQHISK Unmodified 2072.0538 0.05383307 1088 Karp_00224 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.882 53.209 3 0.00028078 18342 20181213_JW_Orientia_Karp_3_2 115.2 67.974 144680000 35737000 20852000 53205000 17359000 0 15024000 0 2500100 5982 1088 5197 36709;36710;36711;36712;36713;36714;36715 23573;23574;23575;23576;23577 23577 5 LTGEGEAGSR Unmodified 975.46214 0.46213773 1073 Karp_00049 yes yes 0 0 0 0 By MS/MS By matching 1 1 19.312 19.535 2 0.012356 3542 20181213_JW_Orientia_Karp_1_3 89.029 47.602 1967000 0 0 1627200 339780 0 0 0 0 5983 1073 5198 36716;36717 23578 23578 1 LTGMAFR Oxidation (M) 810.40581 0.40580882 1551 V9HVZ4;Q2TSD0;P04406-2;P04406;Q0QET7;E7EUT5;A4UCT1;Q5ZEY3;O14556 HEL-S-162eP;GAPDH;GAPD;GAPDHS Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 29.811 30.141 2 0.013666 7938 20181213_JW_Orientia_Karp_1_2 108.98 66.508 65605000 24800000 19583000 7155900 0 6201500 0 7864700 0 5984 1551 5199 36718;36719;36720;36721;36722;36723 23579;23580;23581;23582;23583 23579 1160 5 LTGMAFR Unmodified 794.41089 0.4108942 1551 V9HVZ4;Q2TSD0;P04406-2;P04406;Q0QET7;E7EUT5;A4UCT1;Q5ZEY3;O14556 HEL-S-162eP;GAPDH;GAPD;GAPDHS Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 40.543 40.903 2 0.014018 12597 20181213_JW_Orientia_Karp_2_1 123.99 83.416 57157000 0 17684000 26519000 3156300 872910 0 8924500 0 5985 1551 5199 36724;36725;36726;36727;36728;36729 23584;23585;23586;23587 23586 4 LTHINDTVEK Unmodified 1168.6088 0.60880197 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 25.673 25.923 3 0.0040177 6596 20181213_JW_Orientia_Karp_1_1 91.701 28.167 12246000 3083800 2652700 2873800 0 0 0 3635500 0 5986 1058 5200 36730;36731;36732;36733 23588 23588 1 LTIQDYEK Unmodified 1008.5128 0.51277632 1210 Karp_00870 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 41.045 41.362 2 0.029783 13455 20181213_JW_Orientia_Karp_1_3 82.75 27.974 31957000 7637200 8451400 7228700 2260700 0 499810 5879300 0 5987 1210 5201 36734;36735;36736;36737;36738;36739 23589 23589 1 LTISQAVSGLK Unmodified 1115.655 0.65502388 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.601 51.946 2 1.7293E-34 18733 20181213_JW_Orientia_Karp_2_3 260.98 166.67 1081500000 196290000 271920000 181550000 177350000 91319000 135030000 20147000 7929600 5988 1318 5202 36740;36741;36742;36743;36744;36745;36746;36747 23590;23591;23592;23593;23594;23595;23596 23594 7 LTLDTIFVPNTGK Unmodified 1417.7817 0.78168095 864 E5RK27;E5RFP6;E5RJN6;E5RHZ6;Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 66.158 66.258 2 0.00056367 28891 20181213_JW_Orientia_Karp_1_3 151.79 92.362 7198700 0 0 3395500 0 2402900 1400300 0 0 5989 864 5203 36748;36749;36750 23597 23597 1 LTLHGLQQYYVK Unmodified 1461.798 0.79799972 245 Q5STU3;A0A024RCM3;B4DX78;O00148;Q13838;Q13838-2;F6WLT2;B4DP52;O00148-2;Q69YT6;H0Y400;F6UJC5;H0YCC6 DDX39B;hCG_2005638;DDX39A;DKFZp547B159 ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B yes no 0 0 0 0 By MS/MS 1 47.304 47.654 3 0.0098906 17165 20181213_JW_Orientia_Karp_1_2 81.676 57.605 50224000 0 50224000 0 0 0 0 0 0 5990 245 5204 36751 23598 23598 1 LTLIDANQSTENILK Unmodified 1671.9043 0.90431529 1222 Karp_00889 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 60.403 60.723 2 6.0862E-78 25779 20181213_JW_Orientia_Karp_1_2 316.14 170.15 299030000 52987000 73804000 85201000 17431000 31299000 20950000 6338000 11020000 5991 1222 5205 36752;36753;36754;36755;36756;36757;36758;36759 23599;23600;23601;23602;23603;23604;23605;23606;23607 23600 9 LTLQPVDNSTISLQMGTNK Oxidation (M) 2075.0569 0.056869537 1807 Q15417-2;Q15417;Q15417-3 CNN3 Calponin-3 yes no 0 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 56.071 56.408 2 0.0011959 23004 20181213_JW_Orientia_Karp_1_2 108.06 73.057 57175000 0 22799000 19865000 10995000 0 3515800 0 0 5992 1807 5206 36760;36761;36762;36763 23608 23608 1448 1 LTLQPVDNSTISLQMGTNK Unmodified 2059.062 0.061954915 1807 Q15417-2;Q15417;Q15417-3 CNN3 Calponin-3 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 61.889 62.163 2 0.00033618 26372 20181213_JW_Orientia_Karp_1_3 122.12 70.829 13546000 0 4079600 9466000 0 0 0 0 0 5993 1807 5206 36764;36765 23609;23610 23610 2 LTLSALLDGK Unmodified 1029.607 0.60701105 1616 P21796;B3KTS5;B4DEI3 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 61.957 62.232 2 4.7811E-07 24583 20181213_JW_Orientia_Karp_2_3 191.45 0 230170000 97147000 30100000 46050000 0 22640000 22796000 0 11439000 5994 1616 5207 36766;36767;36768;36769;36770;36771;36772;36773;36774;36775;36776;36777;36778;36779 23611;23612;23613;23614;23615;23616;23617;23618;23619;23620;23621;23622;23623;23624;23625 23622 14 LTLSALVDGK Unmodified 1015.5914 0.59136099 21 A0A024QZT0;A0A024QZN9;P45880-2;P45880;P45880-1;B4DKM5 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.499 56.815 2 5.9899E-06 21312 20181213_JW_Orientia_Karp_2_1 169.41 105.99 177050000 39992000 39893000 37129000 11031000 11522000 36889000 0 589540 5995 21 5208 36780;36781;36782;36783;36784;36785;36786 23626;23627;23628;23629;23630;23631 23629 6 LTLSELDDIIK Unmodified 1258.702 0.70203365 733 B7Z938;Q5D044;H0UI49;Q16363-2;Q16363 LAMA4 Laminin subunit alpha-4 yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 69.295 69.467 2 0.013431 27416 20181213_JW_Orientia_Karp_3_2 90.149 37.359 23727000 5672300 4861700 4176000 353540 1587400 0 4852000 2224600 5996 733 5209 36787;36788;36789;36790;36791;36792;36793 23632 23632 1 LTLVPTVGVR Unmodified 1053.6546 0.65462995 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.283 56.617 2 6.1809E-05 20988 20181213_JW_Orientia_Karp_2_2 153.08 114.94 480260000 115560000 132790000 160450000 32921000 38432000 0 110010 0 5997 1193 5210 36794;36795;36796;36797;36798;36799 23633;23634;23635;23636;23637 23637 5 LTLYDIAHTPGVAADLSHIETK Unmodified 2364.2325 0.23252572 96 Q0QF37;Q75MT9;Q6FHZ0;A0A024R4K3;P40926;P40926-2 MDH2 Malate dehydrogenase;Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 63.03 63.291 4 0.039987 24521 20181213_JW_Orientia_Karp_2_2 43.216 21.413 52607000 17495000 0 15154000 560890 17893000 0 0 1504000 5998 96 5211 36800;36801;36802;36803;36804 23638 23638 1 LTMLNTVSK Oxidation (M) 1021.5478 0.54778161 1861 Q9UQD4;Q6FGM0;Q99961;M0QYE0;M0R0I3;Q99961-3 SH3GL1 Endophilin-A2 yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 32.271 32.471 2 0.014298 9089 20181213_JW_Orientia_Karp_1_2 85.862 20.396 20683000 8313000 10671000 0 0 0 1699700 0 0 5999 1861 5212 36805;36806;36807 23639 23639 1473 1 LTMQVSSLQR Unmodified 1161.6176 0.61759251 1655 P35659;B4DNW3;D6R9L5 DEK Protein DEK yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 44.009 44.299 2 0.040921 15199 20181213_JW_Orientia_Karp_1_3 72.096 29.757 16516000 5494100 0 6765900 533210 2637200 0 1086000 0 6000 1655 5213 36808;36809;36810;36811;36812 23640 23640 1 LTMSQGSYSGNIGNQANPMESVTLLPK 2 Oxidation (M) 2868.3634 0.36335825 1193 Karp_00798 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 55.97 56.292 3 0.0004032 22920 20181213_JW_Orientia_Karp_1_2 88.433 57.848 78599000 18192000 9281500 14762000 14813000 12471000 8045100 1035200 0 6001 1193 5214 36813;36814;36815;36816;36817;36818;36819 23641;23642;23643;23644;23645;23646;23647 23642 758;759 7 LTMSQGSYSGNIGNQANPMESVTLLPK Oxidation (M) 2852.3684 0.36844363 1193 Karp_00798 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 59.841 60.041 3 0.0058714 25315 20181213_JW_Orientia_Karp_1_2 62.722 31.339 45928000 18550000 8716700 13370000 0 5290700 0 0 0 6002 1193 5214 36820;36821;36822;36823 23648;23649 23649 758;759 2 LTNEQLLK Unmodified 957.5495 0.54949617 1170 Karp_00624 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 36.555 36.913 2 0.025489 11208 20181213_JW_Orientia_Karp_1_3 85.161 14.345 350430000 125190000 92177000 53888000 14111000 23436000 7777100 25212000 8643200 6003 1170 5215 36824;36825;36826;36827;36828;36829;36830;36831 23650 23650 1 LTNHEANIDHLHK Unmodified 1540.7746 0.77463852 1312 Karp_01264 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 21.529 21.856 3 0.027212 4495 20181213_JW_Orientia_Karp_1_2 83.53 50.303 8619700 1380300 1974000 3038900 1066300 583000 0 0 577220 6004 1312 5216 36832;36833;36834;36835;36836;36837 23651 23651 1 LTPPQPTIMPISIADR Unmodified 1748.9495 0.94949134 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 5 3 4 3 3 3 1 3 66.701 66.888 2;3 0.001795 25922 20181213_JW_Orientia_Karp_3_2 132.4 92.125 62404000000 21828000000 8049700000 19948000000 2210500000 4499100000 2607900000 40827000 3220200000 6005 1371 5217 36838;36839;36840;36841;36842;36843;36844;36845;36846;36847;36848;36849;36850;36851;36852;36853;36854;36855;36856;36857;36858;36859;36860;36861;36862 23652;23653;23654;23655;23656;23657;23658;23659 23659 8 LTPPQPTIMPISIADR Oxidation (M) 1764.9444 0.94440596 1371 Karp_02001 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 7 3 5 4 4 2 4 61.966 62.262 2;3 0.0022487 24616 20181213_JW_Orientia_Karp_2_1 113.37 81.73 35303000000 6744900000 5706200000 10470000000 2612300000 4031500000 3492900000 856800000 1389100000 6006 1371 5217 36863;36864;36865;36866;36867;36868;36869;36870;36871;36872;36873;36874;36875;36876;36877;36878;36879;36880;36881;36882;36883;36884;36885;36886;36887;36888;36889;36890;36891;36892;36893 23660;23661;23662;23663;23664;23665;23666;23667;23668;23669;23670;23671 23663 953 12 LTPPQPTIMPISIADR Deamidation (NQ) 1749.9335 0.93350692 1371 Karp_02001 yes yes 0 1 0 0 By matching By matching By MS/MS By matching 1 1 1 1 68.409 68.586 3 0.0053661 27503 20181213_JW_Orientia_Karp_2_3 115.58 88.248 6255800 3281700 1319000 0 0 0 956050 0 699060 6007 1371 5217 36894;36895;36896;36897 23672 23672 1852 1 LTQAQIFDYGEIPNFPR Unmodified 2008.0054 0.005426314 953 G3V2H3;G3V5M2;V9HWH6;Q8N7G1;P00491 PNP;HEL-S-156an Purine nucleoside phosphorylase yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 2 1 1 70.618 70.74 2;3 0.0020984 31816 20181213_JW_Orientia_Karp_1_3 111.12 76.421 36879000 2823500 8260700 7014400 2829000 7846000 4008800 4096400 0 6008 953 5218 36898;36899;36900;36901;36902;36903;36904;36905;36906 23673;23674;23675;23676 23673 4 LTQQALSK Unmodified 887.50763 0.50763136 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 24.291 24.623 2 0.001456 5580 20181213_JW_Orientia_Karp_1_3 171.53 67.475 45655000 5894000 12397000 6740500 3898500 4798700 2318300 5912100 3696200 6009 1066 5219 36907;36908;36909;36910;36911;36912;36913;36914 23677;23678 23678 2 LTQTVAHLK Unmodified 1009.592 0.59202969 1558 P05161 ISG15 Ubiquitin-like protein ISG15 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 25.837 26.196 2 0.00081176 6300 20181213_JW_Orientia_Karp_1_3 137.14 94.266 51381000 16248000 0 15551000 3386700 2639000 1851400 5615500 6089700 6010 1558 5220 36915;36916;36917;36918;36919;36920;36921 23679;23680;23681 23680 3 LTSALALDNGQAASESTSNR 2 Deamidation (NQ) 2006.9393 0.93925682 1403 Karp_02211 yes yes 0 2 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 48.265 48.515 2 1.2272E-07 17416 20181213_JW_Orientia_Karp_1_3 161.94 98.472 96545000 18898000 24963000 24176000 13676000 7032100 7799300 0 0 6011 1403 5221 36922;36923;36924;36925;36926;36927 23682;23683;23684 23682 915;916 3 LTSALALDNGQAASESTSNRR Deamidation (NQ) 2162.0564 0.056352265 1403 Karp_02211 yes yes 0 1 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.574 40.876 3 0.0089267 12681 20181213_JW_Orientia_Karp_3_1 78.078 49.913 109560000 65277000 4655800 16590000 0 2535300 2383400 14859000 3263000 6012 1403 5222 36928;36929;36930;36931;36932;36933;36934 23685;23686;23687;23688;23689;23690 23689 915;916 6 LTSALDELLQATR Unmodified 1429.7777 0.77765821 1629 P26022 PTX3 Pentraxin-related protein PTX3 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 69.12 69.297 2 7.0921E-05 27304 20181213_JW_Orientia_Karp_3_2 167.2 95.977 12761000 3216600 3261700 0 0 0 0 4856800 1426200 6013 1629 5223 36935;36936;36937;36938 23691;23692;23693 23693 3 LTSFIGAIAIGDLVK Unmodified 1516.8865 0.88648038 923 F8VQ14;F5GWF6;V9HW96;P78371;B7Z4R3 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 74.049 74.092 2 3.1963E-05 34364 20181213_JW_Orientia_Karp_1_2 160.56 117.82 87918000 47451000 14391000 20828000 2024000 0 0 2141100 1082500 6014 923 5224 36939;36940;36941;36942;36943;36944 23694;23695;23696 23695 3 LTSKQMMTMHNTK 2 Oxidation (M);Deamidation (NQ) 1582.7153 0.715334 0 D2Y6Y7;Q3HRI8;A6ZHM2;K7WIJ6;A0A059QQB7;A6ZGJ0;X5CJR1;X5CDZ8;X5BSQ0;X2CNL3;X2C587;W8DBL0;W8D9J2;W8D8V4;W5VMK3;W0C6A8;V9K6C5;V9K4I6;V9K052;V9JY98;V9JTU3;V9JST4;V9JB23;V5JTX2;V5JSZ5;V5JSF4;V5JS27;V5JQM7;V5JMC8;V5JH69;V5JGY5;U5L389;U5L326;U5KQ12;U3LCA2;U3LBN0;U3LBH8;U3LBD0;U3L335;T2HJH9;T1WUI6;T1SXS5;T1SWT7;T1SUY8;T1STG6;S4UQD8;S4SQC6;R9ZRI6;R9ZPP1;R9ZP27;R9Y9G5;R9Y9A2;R9Y3L7;R9Y256;R9UCI0;R4IBN0;R4IA57;R4I9Q0;R4I9N7;Q9B2V5;Q9B1D3;Q8WCX3;Q8WCX0;Q8WCW5;Q8M7T2;Q8HNQ5;Q85KZ2;Q85KV7;Q85KR5;Q7YEG6;Q7YEG4;Q7YED4;Q7YED3;Q7YCG6;Q7YCD5;Q7YCD1;Q7Y843;Q7Y788;Q7Y6X6;Q6VLT0;Q6VLP4;Q6VL11;Q6VKS1;Q6VJI3;Q6VJ77;Q6VHW2;Q6VHL0;Q6VHB0;Q6VHA0;Q6UG00;Q6RRX7;Q6RRV0;Q6RRA9;Q6RQW5;Q6RQU7;Q6RQR1;Q6RQ23;Q6RNJ5;Q6RNI4;Q6RNG3;Q6RMK9;Q6RLU8;Q6RLS1;Q6RLN5;Q6RKY6;Q6RKX7;Q6R0Z3;Q5XSY0;Q5XSM6;Q5XS83;Q5SB97;Q5SB58;Q5SAZ3;Q5SAH4;Q5SA70;Q5S9N8;Q5S9J9;Q5S9H3;Q5S9G0;Q5S956;Q4ZFD4;Q4ZFC1;Q4ZEL1;Q4ZEI5;Q4VFM9;Q4VFB5;Q4GV61;Q4GSG2;Q4GQR4;Q4GMY9;Q4GM79;Q4GKN3;Q4GE32;Q4GD70;Q4G992;Q4G8X5;Q4F459;Q4F3S9;Q4F3R6;Q4F296;Q4F0V2;Q4EZ28;Q4EYS4;Q4EXI2;Q4EXG9;Q4EWS2;Q2LHW7;Q2LH31;Q15IK2;Q0ZK81;Q0ZFG9;Q0ZFE3;Q0ZEN3;Q0Z7G2;Q0VXH8;Q0VW08;Q0VV46;Q0VV07;Q06UF8;Q06U80;Q06TP8;L7YL59;L7YKA8;L7SRW4;L7SKU1;L7SDL5;L7P4X9;L7NVL6;L7NV50;K9R230;K9MX48;K7WVK3;J7K441;I6R7U9;I6N4U3;I6MMM6;I6MDZ8;I3Q8L5;I3Q6Q2;I3Q4T9;I3Q4R3;I3Q468;I1E4I7;I0B6N6;H9T7A2;H9T776;H9T6E2;H9T5P5;H9T0U2;H9SZG1;H9SY95;H9STU8;H9STS2;H9SRX2;H9SRS0;H9SP73;H9SNR7;H9SHT7;H9SH14;H9SF77;H9SEJ3;H9SBL6;H9S8D5;H9S385;H9S0I6;H9RZ95;H9RY47;H9RVR5;H9RTM9;H9RQ86;H9RN98;H9RLD9;H9RKF1;H9RJH6;H9RHH4;H9RCN4;H9RCE3;H9RB12;H9R9T3;H9R203;H9QWE0;H9QVF2;H9QVC6;H9QTU3;H9QSY1;H9QQA8;H9QLE3;H9QJB5;H9QH48;H9QEH5;H9QD83;H9QBC0;H9QA54;H9Q9E4;H9Q2V6;H9Q2F0;H9Q0D5;H9PYL1;H9PTZ9;H9PQV7;H9PQP2;H9PNM7;H9PLI6;H9PI66;H9PFC8;H9PCV7;H9P592;H9P0H8;H9P048;H9NZ34;H9NXQ3;H9NTE5;H9NSN5;H9NRK8;H9NRA4;H9NQF5;H9NQE2;H9MSB7;H9MN09;H9MIG0;H9LRH8;H9LPU2;H9LP54;H9LMM2;H9LLS3;H9LLP7;H6WIT7;H6WHW2;H6WHI2;H6WH00;G9IES7;G8JD62;G5D8Q7;G5D8J5;G4W2G2;G4W1R5;G4W1K0;G4W157;G4W0D4;G4VZS6;G4VZQ0;G4VZM4;G4VZ16;G3C9Y6;G1JYS7;F8VBB0;F8V4U1;F8V422;F8V3Y3;F6N1T4;F6K6M4;F5BA93;F2WIP1;F2WIH6;F2WID7;F2WI85;F2WHZ4;F2WHS9;F2WGR5;F2WGM6;F2WGK0;F2WGI7;F2WGE8;F2WGD5;F2WG57;F2VPX4;F1CIQ1;F1CIE7;F1B850;F1B5V7;F1AZB5;F1AZ37;E9P7C2;E9P6Q2;E9P2Y5;E9NKT2;E9NJY3;E9NA19;E9JXI6;E7E3U7;E7E3A2;E7E2Y5;E5QCD4;E5QBE8;E5LR28;E5FWR5;E5F549;E5EXA0;E5E0W5;E5E0V2;E5E0T9;E5E0Q0;E5E0L1;E5E0I5;E5DZZ0;E5DZS5;E5DYX6;E5DYK9;E5DYI3;E5DYE4;E5DY40;E3W6H4;E2JKH1;E2JKF8;E2J3Y5;E2FQ77;E2DGN9;E2DG83;E1B4I5;E1AXS4;D9MZX0;D9MYY6;D8L3N5;D8L327;D7SF29;D7P9M4;D7P9H2;D7P9F9;D7P9D3;D7NM56;D6R7T3;D6N7S2;D6N624;D6N5X2;D6N474;D6N3H7;D5I8A0;D5I7X0;D5I7T1;D3KD25;D3KAZ0;D1G3Z7;D0VDU7;D0UTX4;D0UTW1;D0UTS2;C9D5T3;C9D5C7;C7SJU5;C7SJA0;C5MN37;C0LJY4;B9U5I9;B9EFL9;B9EEV9;B9EDU5;B8XZR3;B8RFM5;B8R3B7;B7TPA5;B7TCM6;B6RGC6;B5M880;B5M7X6;B5M7I3;B4YG72;B3DE99;B2Z680;B2YAA3;B2XM45;B2MZ39;B2KLZ5;B2KLT0;B2KLM8;B2D4T1;B2D3Q0;B2D398;B2D0N3;B1PI24;B1NUN5;B1NU66;B1NTU9;B0EWL8;A8WF83;A8WE09;A8WDK6;A8R1T6;A8QTE5;A8JLH9;A7XUC2;A7XTZ0;A7XSM8;A7LDA2;A6ZIR4;A6ZHP8;A6ZG24;A6ZFB4;A6ZF88;A6ZEV9;A6ZET3;A6ZEL8;A6ZCZ8;A6ZC37;A6Z7G3;A6Z7D7;A6Z6R7;A6Z698;A6Z659;A6Z4T0;A6Z2Z4;A6YYN7;A6YWX8;A6YW69;A6YVS8;A6YVN9;A6YUU0;A6YUS7;A6YUI6;A5JYK3;A4ZYE7;A3R0R5;A3FPA1;A1Z519;A1Z4L3;A1Z4G1;A1Z4E8;A1Z496;A1DVF1;A0S590;A0S525;A0S2V8;A0S2R9;A0S2H8;A0S2B3;A0S1G1;A0S0Z5;A0A068CCX5;A0A059VCQ6;A0A059S7N3;A0A059S701;A0A059S1D9;A0A059RVW3;A0A059RUY3;A0A059RU34;A0A059RTL6;A0A059RTC0;A0A059RRH2;A0A059RR79;A0A059RPU4;A0A059RPS5;A0A059RP18;A0A059RNJ2;A0A059RNF3;A0A059RND0;A0A059RMA1;A0A059RL82;A0A059RKH8;A0A059RJ29;A0A059RIS0;A0A059RIN6;A0A059RHU8;A0A059RHL4;A0A059RGC7;A0A059QWC2;A0A059QSI6;A0A059QR71;A0A059QR26;A0A059QQZ9;A0A059QQT5;A0A059QQM1;A0A059QPL3;A0A059QLY9;A0A059QLQ9;A0A059QJ47;A0A059QIY9;A0A059QGJ9;A0A023QYE6;A0A023QR14;A0A023QMV4;A0A023QLJ8;A0A023QHY5;A0A023QGP6;A0A023QEV0;A0A023QE67;A0A023QD05;A0A023Q9F0;A0A023Q7H2;A0A023I8Y9;A0A023I889;A0A023I7V4;A0A023I7L8;B2Z4U9;B1PIH2;P00846 ATP6;atp6;MTATP6;ATPase 6;MT-ATP6 ATP synthase subunit a yes no 0 1 2 1 By MS/MS 1 41.834 42.486 2 0.033093 13552 20181213_JW_Orientia_Karp_3_1 60.518 16.315 0 0 0 0 0 0 0 0 0 6015 0 5225 36945 23697 23697 1254 1 LTSLAAALDENK Unmodified 1244.6612 0.66123147 840 D3DVQ1;O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 50.345 50.528 2 0.0058645 19545 20181213_JW_Orientia_Karp_1_1 105.4 47.151 13473000 6462900 4310900 2698800 0 0 0 0 0 6016 840 5226 36946;36947;36948 23698 23698 1 LTTEVSMLSER Oxidation (M) 1280.6282 0.62821678 1403 Karp_02211 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 40.407 40.727 2 3.1001E-18 13015 20181213_JW_Orientia_Karp_1_3 229.17 148.71 247130000 58024000 37059000 65742000 21772000 2069900 11899000 46228000 4330900 6017 1403 5227 36949;36950;36951;36952;36953;36954;36955;36956;36957 23699;23700;23701;23702;23703;23704;23705;23706 23701 1011 8 LTTEVSMLSER Unmodified 1264.6333 0.63330216 1403 Karp_02211 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 47.904 48.249 2 0.00012857 17343 20181213_JW_Orientia_Karp_1_3 159.34 107.81 220020000 29550000 71202000 54114000 27503000 9740200 11709000 196200 16005000 6018 1403 5227 36958;36959;36960;36961;36962;36963;36964;36965 23707;23708;23709;23710;23711 23710 5 LTTLELLEVR Unmodified 1185.6969 0.69688869 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2;B4DIF8 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 64.247 64.45 2 2.4459E-06 28467 20181213_JW_Orientia_Karp_1_1 192.91 140.12 22913000 12660000 2618100 0 0 6339400 0 0 1294700 6019 506 5228 36966;36967;36968;36969;36970;36971 23712;23713;23714;23715;23716 23712 5 LTTPTYGDLNHLVSATMSGVTTCLR Oxidation (M) 2723.3259 0.32585053 1566;1747;1550 P04350;B4DE77;M0R2D3;Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 0 1 0 By MS/MS By MS/MS By matching 1 1 1 63.605 63.775 3 0.011177 27423 20181213_JW_Orientia_Karp_1_3 59.429 31.016 45937000 23556000 0 16188000 0 0 0 0 6192500 6020 1550;1566;1747 5229 36972;36973;36974 23717;23718 23718 1157 2 LTTPTYGDLNHLVSATMSGVTTCLR Unmodified 2707.3309 0.33093591 1566;1747;1550 P04350;B4DE77;M0R2D3;Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 72.024 72.102 3 0.00050791 32982 20181213_JW_Orientia_Karp_1_2 93.21 70.97 239260000 82777000 36360000 41023000 6101000 13836000 5405600 53758000 0 6021 1550;1566;1747 5229 36975;36976;36977;36978;36979;36980;36981 23719 23719 1 LTTQSPYSTEVLK Unmodified 1465.7664 0.76642482 2037 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 75.779 75.783 2 0.0069843 35506 20181213_JW_Orientia_Karp_1_2 103.88 8.1037 139580000 55707000 31794000 14849000 0 19433000 2691200 15110000 0 + 6022 2037 5230 36982;36983;36984;36985;36986;36987;36988;36989;36990;36991;36992 23720;23721;23722;23723;23724 23721 5 LTVGLTR Unmodified 758.46504 0.46503826 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 39.569 39.744 2 0.011877 12227 20181213_JW_Orientia_Karp_3_1 129.68 58.387 165340000 123440000 41892000 0 0 0 0 0 0 6023 85 5231 36993;36994;36995;36996 23725;23726;23727 23727 3 LTVKPNVIVTR Unmodified 1238.7711 0.77105669 1116 Karp_00304 yes yes 0 0 0 1 By MS/MS 1 39.584 39.934 3 0.034771 12877 20181213_JW_Orientia_Karp_1_2 78.692 43.151 0 0 0 0 0 0 0 0 0 6024 1116 5232 36997 23728 23728 1 LTVMSLQESGLK Unmodified 1304.701 0.70098779 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 53.699 53.899 2 0.03789 21327 20181213_JW_Orientia_Karp_1_2 93.442 71.661 41340000 8546700 14056000 17063000 0 1674900 0 0 0 6025 1520 5233 36998;36999;37000;37001 23729;23730 23729 1 LTVMYSQINGASR Deamidation (NQ) 1439.7079 0.70786408 1843 Q59GW5;Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 0 1 0 0 By MS/MS 1 50.754 50.953 2 0.016823 19158 20181213_JW_Orientia_Karp_1_3 101.89 51.535 0 0 0 0 0 0 0 0 0 6026 1843 5234 37002 23731 23731 1173 1 LTVSSLQESGLK Unmodified 1260.6925 0.6925316 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.522 46.842 2 0.0015976 16451 20181213_JW_Orientia_Karp_1_3 126.66 77.122 118230000 35082000 34608000 23862000 3204000 2977000 4278400 3349200 10872000 6027 1615 5235 37003;37004;37005;37006;37007;37008;37009;37010 23732 23732 1 LVAIVDVIDQNR Unmodified 1353.7616 0.76161421 389 A8K7N0;E7EPB3;A0PJ62;B7Z6S8;A8K3Q9;Q6IPH7;P50914 RPL14 60S ribosomal protein L14 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 64.12 64.336 2 4.6275E-05 28379 20181213_JW_Orientia_Karp_1_1 182.64 129.14 101540000 41541000 22640000 20941000 0 6364900 7150400 83642 2817500 6028 389 5236 37011;37012;37013;37014;37015;37016;37017 23733;23734;23735;23736;23737 23733 5 LVAYSNNLFDLSK Unmodified 1482.7718 0.77184455 1079 Karp_01488;Karp_02270;Karp_02061;Karp_01254;Karp_00697;Karp_00099 yes no 0 0 0 0 By matching By MS/MS 1 1 62.918 63.017 2 0.02801 26840 20181213_JW_Orientia_Karp_1_3 80.737 51.186 9267400 5845000 0 3422400 0 0 0 0 0 6029 1079 5237 37018;37019 23738 23738 1 LVCPADNLR Unmodified 1056.5386 0.53861391 1466;1549 L8E853;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 39.022 39.285 2 0.038793 12960 20181213_JW_Orientia_Karp_1_1 72.879 31.652 58829000 28126000 0 0 0 6906600 2656100 21140000 0 6030 1466;1549 5238 37020;37021;37022;37023 23739 23739 1 LVDTFLEDVK Unmodified 1177.6231 0.62305505 803 CON__P34955 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 59.074 59.367 2 1.0715E-06 22688 20181213_JW_Orientia_Karp_2_1 186.41 108.88 724780000 79549000 108000000 209770000 52367000 119050000 155520000 518560 0 + 6031 803 5239 37024;37025;37026;37027;37028;37029;37030 23740;23741;23742 23741 3 LVDVHPALHAR Unmodified 1226.6884 0.68838969 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 31.524 31.858 3 0.024434 8423 20181213_JW_Orientia_Karp_3_1 102.06 69.538 107940000 19919000 46908000 26640000 4379200 2937100 0 7151500 0 6032 1449 5240 37031;37032;37033;37034;37035;37036 23743;23744;23745 23745 3 LVEALCAEHQINLIK Unmodified 1749.9447 0.94474031 1627 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 2 1 1 52.137 52.461 2;3 5.0179E-06 17986 20181213_JW_Orientia_Karp_3_2 132.5 93.868 364190000 79330000 70497000 33045000 67656000 34872000 68666000 8814900 1310300 6033 1627 5241 37037;37038;37039;37040;37041;37042;37043;37044;37045;37046;37047 23746;23747;23748;23749;23750;23751;23752;23753 23753 8 LVEDHLAVQSLIR Unmodified 1491.8409 0.84092717 562;2002 B4DF00;E9PDF2;E9PCR7;Q02218-2;Q02218;C9J4G7;Q02218-3;A2VCT2;A2VCT3;Q9ULD0 OGDH;OGDHL 2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 52.496 52.695 3 0.00045871 20653 20181213_JW_Orientia_Karp_1_2 135.02 86.973 28127000 11168000 8020000 4929200 0 0 4009500 0 0 6034 562;2002 5242 37048;37049;37050;37051 23754;23755;23756 23755 3 LVEENALAPDFSK Unmodified 1431.7246 0.72456001 1789 Q13201;E7EPG1;B7Z7R8;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 52.946 53.256 2 0.0026726 21327 20181213_JW_Orientia_Karp_1_1 119.21 74.573 36532000 9695400 9002500 10886000 3743300 2142200 0 0 1062900 6035 1789 5243 37052;37053;37054;37055;37056;37057 23757 23757 1 LVEITHPEPMLFFSDEPSSPAYTVINNEVYTLPITR Oxidation (M) 4135.05 0.04999983 1266 Karp_01074 yes yes 0 0 1 0 By matching By matching By MS/MS 1 1 1 73.663 73.678 3 0.00028215 33795 20181213_JW_Orientia_Karp_1_3 70.062 50.944 50285000 17259000 21352000 11675000 0 0 0 0 0 6036 1266 5244 37058;37059;37060 23758 23758 830 1 LVEPQISELNHR Unmodified 1433.7627 0.76267685 271 E9PDN5;A0A075B6G3;P11532-3;P11532-2;P11532-4;P11532;Q8WYD2 DMD Dystrophin yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 40.309 40.629 3 0.00094 12581 20181213_JW_Orientia_Karp_3_1 129.88 9.0217 509530000 200180000 121320000 0 619600 38284000 0 149130000 0 6037 271 5245 37061;37062;37063;37064;37065 23759;23760 23760 2 LVEPSIPNYGK Unmodified 1215.6499 0.6499385 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.692 49.037 2 0.0016233 16882 20181213_JW_Orientia_Karp_2_2 120.31 59.334 619890000 112750000 167280000 92960000 109530000 39319000 52242000 362190 45452000 6038 1193 5246 37066;37067;37068;37069;37070;37071;37072;37073 23761;23762;23763;23764;23765;23766;23767 23765 7 LVESLPQEIK Unmodified 1154.6547 0.65468953 1702 P52815;Q96Q74;B4DLN1 MRPL12;MRPL7/L12 39S ribosomal protein L12, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1 47.356 47.69 2 0.00042826 17569 20181213_JW_Orientia_Karp_1_1 136.99 73.455 130240000 24298000 33411000 16527000 16810000 9198800 13428000 0 16562000 6039 1702 5247 37074;37075;37076;37077;37078;37079;37080;37081;37082 23768;23769;23770;23771;23772;23773;23774;23775 23768 8 LVEWIIVQCGPDVGRPDR Unmodified 2108.0837 0.08369341 1761 Q5U0D2;Q01995;Q6FI52;E9PJ32 TAGLN Transgelin yes no 0 0 0 1 By MS/MS By matching 1 1 61.817 62.167 3 0.025166 24344 20181213_JW_Orientia_Karp_2_1 77.746 45.196 6015200 0 0 0 1061900 4953300 0 0 0 6040 1761 5248 37083;37084 23776 23776 1 LVEWLEHRPSEGK Unmodified 1578.8154 0.8154407 1262 Karp_01022 yes yes 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 39.035 39.373 3 0.021674 12126 20181213_JW_Orientia_Karp_3_1 116.74 71.456 204250000 0 80825000 77243000 0 11314000 0 34871000 0 6041 1262 5249 37085;37086;37087;37088 23777 23777 1 LVGEIMQETGTR Oxidation (M) 1348.6657 0.66566492 92 B2R5V9;A0A024R4E5;Q00341;B4DKR8;H0Y394;Q00341-2;Q5HYC5;H7C0A4 HDLBP;DKFZp686L08115 Vigilin yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 37.813 38.113 2 0.0074177 12007 20181213_JW_Orientia_Karp_1_2 99.539 62.474 27122000 9532500 9745800 5258800 695900 0 0 1889300 0 6042 92 5250 37089;37090;37091;37092;37093;37094;37095 23778;23779;23780 23780 100 3 LVGPEGFVVTEAGFGADIGMEK Unmodified 2222.0929 0.092920692 127 A0A024R652;F5H2F4;P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 42.107 42.427 4 0.032036 13660 20181213_JW_Orientia_Karp_3_1 45.257 28.769 266990000 25865000 28184000 15076000 88888000 32144000 30012000 41338000 5484700 6043 127 5251 37096;37097;37098;37099;37100;37101;37102;37103 23781 23781 0 LVGQGASAVLLDLPNSGGEAQAK Unmodified 2194.1594 0.15936077 1844 Q5H928;Q99714-2;Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 By MS/MS 1 62.555 62.555 2 0.029363 27256 20181213_JW_Orientia_Karp_1_1 129.05 92.284 0 0 0 0 0 0 0 0 0 6044 1844 5252 37104 23782 23782 1 LVGYLDR Unmodified 834.45995 0.45995289 22 Q53FJ5;A0A024QZQ2;C9JIZ6;Q59EN5;B1AVU8;P07602;P07602-2;P07602-3;B4DEK5;B4DRB7;Q5BJH1 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 By MS/MS By matching 1 1 41.566 42.018 2 0.042828 13514 20181213_JW_Orientia_Karp_2_3 81.784 42.566 37553000 0 0 0 0 0 2330300 35223000 0 6045 22 5253 37105;37106 23783 23783 1 LVIDWQLAK Unmodified 1084.6281 0.62808085 1241 Karp_00908 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 61.83 62.067 2 0.0010485 24244 20181213_JW_Orientia_Karp_2_3 131.06 75.051 113330000 0 31146000 23711000 0 49156000 9318700 0 0 6046 1241 5254 37107;37108;37109;37110 23784;23785;23786;23787;23788 23788 5 LVIIEGDLER Unmodified 1155.6499 0.6499385 494 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-3;P06753-5;P06753-6;Q5VU61;J3KN67;P06753-4;Q8NAG3;B4DWT5;M1VPF4;P06753;B4DQ80;Q8NAH0;P06753-7;Q6LDX7;Q5VU62 DKFZp686J1372;TPM3;TPM3-ROS1;HEL-S-82p Tropomyosin alpha-3 chain;Tyrosine-protein kinase receptor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.527 54.843 2 0.00010215 20074 20181213_JW_Orientia_Karp_2_2 148.69 96.208 291430000 34534000 45700000 45906000 38635000 53645000 71851000 0 1157600 6047 494 5255 37111;37112;37113;37114;37115;37116;37117 23789;23790;23791;23792;23793;23794;23795 23793 7 LVIIESDLER Unmodified 1185.6605 0.66050319 859 H0YL52;D9YZV5;D9YZV4;P09493-9;P09493-4;P09493-3;P09493-10;P09493;H0YKX5;Q8TCG4;H0YNC7;Q15657;Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;A0A024R5W6;Q59GR8;Q6ZN40;P09493-2;P09493-5;P09493-8;P09493-7;P09493-6;H0YK20;H0YL42 TPM1 Tropomyosin alpha-1 chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 54.341 54.653 2 0.00093054 20039 20181213_JW_Orientia_Karp_2_1 125.71 72.927 76912000 0 0 11455000 21931000 24356000 19171000 0 0 6048 859 5256 37118;37119;37120;37121;37122 23796;23797;23798;23799;23800 23798 5 LVILEGELER Unmodified 1169.6656 0.66558856 649 B4DVY2;V9HW56;P67936;K7ERG3;K7ENT6;B4DGC2;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951-3;P67936-2;P07951-2;P07951;B4E3P1;K7EPV9;K7EMU5;U3KQK2 HEL-S-108;TPM4;HEL-S-273;TPM2;TPM2b Tropomyosin alpha-4 chain;Tropomyosin beta chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 55.979 56.337 2 4.1829E-06 21051 20181213_JW_Orientia_Karp_2_1 174.02 112.34 529590000 63366000 57699000 65503000 134470000 96033000 103580000 6662500 2277600 + 6049 649 5257 37123;37124;37125;37126;37127;37128;37129;37130 23801;23802;23803;23804;23805;23806;23807 23804 7 LVINGNPITIFQER Deamidation (NQ) 1613.8777 0.8777066 1551 V9HVZ4;Q2TSD0;P04406-2;P04406;Q0QET7;B4DRV9 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.62 71.698 2 5.3433E-05 32804 20181213_JW_Orientia_Karp_1_1 168.98 128.26 76349000 24281000 8862500 12397000 5641700 6804600 5630000 12731000 0 6050 1551 5258 37131;37132;37133;37134;37135;37136;37137 23808;23809;23810;23811;23812;23813;23814;23815 23808 1034;1035 8 LVITAFNDAFHQINTEASK Unmodified 2118.0746 0.074568512 1158 Karp_00578 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 61.183 61.47 3 0.010968 26358 20181213_JW_Orientia_Karp_1_2 70.784 47.149 69645000 17428000 13554000 19641000 3248300 8581400 6075900 0 1115800 6051 1158 5259 37138;37139;37140;37141;37142;37143;37144 23816;23817;23818 23817 3 LVLEVAQHLGESTVR Unmodified 1649.9101 0.91006937 1560 Q0QEN7;V9HW31;P06576 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 51.722 52.03 3 0.032835 18596 20181213_JW_Orientia_Karp_2_2 79.804 46.021 114640000 13807000 34674000 25499000 19336000 9052800 9442200 2830200 0 6052 1560 5260 37145;37146;37147;37148;37149;37150;37151 23819 23819 1 LVLEVFPR Unmodified 971.5804 0.58040237 1230 Karp_00897 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 3 60.571 60.858 2 0.0045325 25546 20181213_JW_Orientia_Karp_1_3 129.68 62.689 222990000 126810000 17493000 41958000 1886600 16531000 16369000 0 1943000 6053 1230 5261 37152;37153;37154;37155;37156;37157;37158;37159;37160 23820;23821;23822;23823;23824;23825;23826;23827 23822 8 LVLNFPLLGK Unmodified 1112.6958 0.69576648 1123 Karp_00323 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 72.4 72.462 2 0.027207 26634 20181213_JW_Orientia_Karp_3_1 79.713 49.209 39458000 0 10071000 8846700 0 0 1536200 19004000 0 6054 1123 5262 37161;37162;37163;37164 23828 23828 1 LVLPHTVVVEILETSPNIK Unmodified 2100.2194 0.21944183 1436 Karp_02394 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.903 70.024 3 9.1021E-05 31754 20181213_JW_Orientia_Karp_1_2 126.63 96.526 74971000 11318000 10048000 7750500 1531100 11610000 7859000 24854000 0 6055 1436 5263 37165;37166;37167;37168;37169;37170;37171 23829;23830;23831;23832;23833;23834;23835 23830 7 LVLQYAPSA Unmodified 960.52803 0.52803245 1478 Q7Z4Z1;Q53HJ6;M0QXB4;O14579-2;O14579;O14579-3 COPE Coatomer subunit epsilon yes no 0 0 0 0 By MS/MS 1 59.744 59.943 2 0.011038 25018 20181213_JW_Orientia_Karp_1_3 115.49 73.992 0 0 0 0 0 0 0 0 0 6056 1478 5264 37172 23836 23836 1 LVLVDNHK Deamidation (NQ) 937.52328 0.52328142 1449 Karp_02529 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 33.807 34.157 2 0.040032 9945 20181213_JW_Orientia_Karp_1_3 87.181 31.677 14597000 7330500 4249200 1707900 583440 0 0 725930 0 6057 1449 5265 37173;37174;37175;37176;37177 23837 23837 1 LVLVDNHK Unmodified 936.53927 0.53926584 1449 Karp_02529 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 29.908 30.244 2 0.038383 7444 20181213_JW_Orientia_Karp_2_1 77.923 15.205 133320000 18173000 72444000 26941000 6567300 3726500 1673100 3798000 0 6058 1449 5265 37178;37179;37180;37181;37182;37183;37184 23838 23838 1 LVLVGDGGTGK Unmodified 1014.571 0.5709599 705;1783 B5MDF5;J3KQE5;P62826;H0YFC6;Q96QB7;Q0EFC9 RAN;TC4 GTP-binding nuclear protein Ran no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 42.318 42.567 2 0.0044668 14772 20181213_JW_Orientia_Karp_1_1 107.55 20.406 116250000 38604000 29583000 44429000 3631100 0 0 0 0 6059 705;1783 5266 37185;37186;37187;37188;37189 23839;23840;23841 23839 3 LVLVNAIYFK Unmodified 1178.7063 0.70633117 24 A0A024QZT4;P50453;H7BXK7;C9J7N5;B2R9H3;A0A024R2B1;B4DDY9;P50452-2;P50452;O75830 SERPINB9;SERPINB8;SERPINI2 Serpin B9;Serpin B8;Serpin I2 no no 0 0 0 0 By MS/MS By matching By matching 1 1 1 65.321 65.541 2 0.024177 28424 20181213_JW_Orientia_Karp_1_3 81.548 54.294 3732100 0 0 2275100 0 0 1029300 0 427690 6060 24 5267 37190;37191;37192 23842 23842 1 LVLVNALYFNGQWK Deamidation (NQ) 1664.8926 0.89262839 4 A0A024QYT5;P05121;B7ZAB0;B7Z4X6;P05121-2 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 73.345 73.395 2 0.0043629 29684 20181213_JW_Orientia_Karp_3_2 120.27 81.093 8931200 0 0 0 0 0 0 8931200 0 6061 4 5268 37193;37194;37195 23843;23844;23845 23845 0;1255 3 LVLVNAVYFR Unmodified 1192.6968 0.69682911 26 Q8IXH2;A0A024QZX3;A0A024QZX5;P35237 SERPINB6 Serpin B6 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 63.593 63.726 2 0.0015922 28003 20181213_JW_Orientia_Karp_1_1 117.4 84.4 10597000 7293900 2031200 0 0 0 1271700 0 0 6062 26 5269 37196;37197;37198;37199 23846;23847;23848 23846 3 LVNALDDDDDVQR Unmodified 1486.69 0.68996541 1138 Karp_00450 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 43.983 44.285 2 0.00082784 15085 20181213_JW_Orientia_Karp_1_3 145.14 92.969 93933000 22885000 32889000 18643000 0 4193400 6376900 7033000 1912800 6063 1138 5270 37200;37201;37202;37203;37204;37205;37206 23849;23850;23851;23852 23850 4 LVNELTEFAK Unmodified 1162.6234 0.6233894 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 1 1 54.943 55.254 2 1.2486E-17 21310 20181213_JW_Orientia_Karp_1_1 232.72 149.97 9191200000 2959900000 917490000 1070300000 1444900000 1018400000 1558900000 198120000 23120000 + 6064 792 5271 37207;37208;37209;37210;37211;37212;37213;37214;37215;37216 23853;23854;23855;23856;23857;23858;23859;23860;23861;23862 23853 10 LVNELTEFAK Deamidation (NQ) 1163.6074 0.60740498 792 CON__P02769 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 2 1 1 55.433 55.777 2 6.142E-06 23706 20181213_JW_Orientia_Karp_1_1 194.94 130.73 620440000 73139000 96119000 108960000 76664000 104240000 153790000 6594400 937960 + 6065 792 5271 37217;37218;37219;37220;37221;37222;37223;37224;37225;37226;37227;37228;37229;37230;37231 23863;23864;23865;23866;23867;23868;23869;23870;23871;23872;23873 23863 270 11 LVNEVFSEVVIR Unmodified 1402.782 0.78201531 1386 Karp_02134 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 63.951 64.153 2 0.013585 25385 20181213_JW_Orientia_Karp_2_1 91.961 49.96 36270000 10986000 9614300 4881100 664470 4140700 4510600 0 1472300 6066 1386 5272 37232;37233;37234;37235;37236;37237;37238 23874;23875 23874 2 LVNMLDAVQENQHK Oxidation (M) 1653.8145 0.81445442 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 1 1 34.81 35.167 2;3 0.001109 10000 20181213_JW_Orientia_Karp_3_1 131.08 81.726 862350000 112840000 87955000 214120000 1490200 40858000 563310 367890000 36630000 6067 345 5273 37239;37240;37241;37242;37243;37244;37245;37246;37247 23876;23877;23878;23879;23880;23881;23882 23880 233 7 LVNMLDAVQENQHK Oxidation (M);Deamidation (NQ) 1654.7985 0.79847001 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 1 1 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 37.218 37.551 3 0.00077925 11212 20181213_JW_Orientia_Karp_3_1 130.47 98.183 79114000 27623000 21242000 11973000 2962500 2895600 0 12419000 0 6068 345 5273 37248;37249;37250;37251;37252;37253 23883;23884;23885 23885 133 233 3 LVNMLDAVQENQHK Unmodified 1637.8195 0.8195398 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 46.681 46.979 2;3 2.1079E-05 15770 20181213_JW_Orientia_Karp_3_1 185.57 133.41 833120000 227820000 267300000 199660000 12916000 48726000 51121000 4185300 21387000 6069 345 5273 37254;37255;37256;37257;37258;37259;37260;37261;37262;37263;37264;37265;37266;37267;37268 23886;23887;23888;23889;23890;23891;23892;23893 23892 8 LVNQQDITELR Unmodified 1327.7096 0.70957864 1090 Karp_00230 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 45.791 46.033 2 0.0039307 16226 20181213_JW_Orientia_Karp_1_2 109.79 58.73 32516000 11533000 9228800 6670700 0 2279900 0 0 2803600 6070 1090 5274 37269;37270;37271;37272;37273 23894 23894 1 LVNQSYMMSQNKGNVVK Oxidation (M);3 Deamidation (NQ) 1957.9125 0.91251349 410 A8MT70-3;C9JVV2;B7ZMD2;A8MT70;A8MT70-2 ZBBX Zinc finger B-box domain-containing protein 1 yes no 0 3 1 1 By MS/MS By matching 1 1 53.493 53.767 3 0.028789 21297 20181213_JW_Orientia_Karp_1_2 55.815 21.98 16234000 0 7306500 8927300 0 0 0 0 0 6071 410 5275 37274;37275 23895 23895 157;158;1429 0 LVNSLYPDGSK Unmodified 1191.6136 0.61355299 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9;Q59FA5;E9PJ32 TAGLN Transgelin yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.988 43.288 2 0.00040717 14015 20181213_JW_Orientia_Karp_3_1 145.28 68.084 68152000 23322000 11998000 13767000 5516500 2321700 0 11227000 0 6072 1761 5276 37276;37277;37278;37279;37280;37281;37282 23896;23897;23898;23899;23900;23901 23900 6 LVPLLLEDGGEAPAALEAALEEK Unmodified 2347.2523 0.25225811 1796 Q14204;B4DSR6 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 75.133 75.149 2;3 7.4996E-06 35018 20181213_JW_Orientia_Karp_1_1 124.94 94.849 56374000 26710000 16697000 7188600 0 0 1505800 4271900 0 6073 1796 5277 37283;37284;37285;37286;37287;37288 23902;23903;23904;23905 23902 3 LVPTVLCLLK Unmodified 1154.7097 0.70970199 1350 Karp_01526 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 68.512 68.714 2 0.035122 24295 20181213_JW_Orientia_Karp_3_1 74.92 43.39 33081000 7964000 3214600 6542800 0 6774100 3335600 2503100 2747200 6074 1350 5278 37289;37290;37291;37292;37293;37294;37295 23906 23906 1 LVPVGYGIR Unmodified 972.57565 0.57565135 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;E9PK01;P29692-4;Q71RH4;Q9H7G6;H0YE72;H0YE58;E9PQC9 EEF1D Elongation factor 1-delta yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 48.076 48.377 2 0.0061521 17422 20181213_JW_Orientia_Karp_1_3 101.69 63.453 151450000 22952000 50435000 29797000 25814000 5766600 14653000 0 2031100 6075 1641 5279 37296;37297;37298;37299;37300;37301;37302 23907;23908;23909;23910 23908 4 LVQAAQMLQSDPYSVPAR Oxidation (M) 1988.999 0.99896073 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4DKC9;B4DTM7;P18206-3 VCL;HEL114 Vinculin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 50.027 50.389 2 7.4262E-09 18802 20181213_JW_Orientia_Karp_1_3 166.86 123.24 22733000 5791900 6614800 5535800 0 0 0 2697700 2093300 6076 19 5280 37303;37304;37305;37306;37307 23911;23912;23913;23914;23915 23913 10 5 LVQAEYWHDPIK Unmodified 1497.7616 0.76161421 1694 P50897;E9PIA8;B4DWU3;E9PMG2;P50897-2;Q5T0S4 PPT1 Palmitoyl-protein thioesterase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 46.89 47.04 3 0.0090171 16614 20181213_JW_Orientia_Karp_1_3 83.137 36.258 35148000 14526000 0 8684900 0 3897000 8039400 0 0 6077 1694 5281 37308;37309;37310;37311 23916;23917;23918;23919 23917 4 LVQAFQFTDK Unmodified 1195.6237 0.62372375 1773 Q06830;B2R4P2 PRDX1 Peroxiredoxin-1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 52.107 52.432 2 0.0026293 20833 20181213_JW_Orientia_Karp_1_1 140.17 96.362 0 0 0 0 0 0 0 0 0 6078 1773 5282 37312;37313 23920;23921 23920 2 LVQAFQYTDK Unmodified 1211.6186 0.61863837 1008 H7C3T4;V9HW63;Q13162 PRDX4;HEL-S-97n Peroxiredoxin-4 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 44.616 44.883 2 0.010444 14675 20181213_JW_Orientia_Karp_2_2 92.538 55.347 31825000 12283000 8851700 3884200 0 2379200 1645200 2781000 0 6079 1008 5283 37314;37315;37316;37317;37318;37319 23922 23922 1 LVQDVANNTNEEAGDGTTTATVLAR Unmodified 2559.2413 0.2412525 81 B7Z597;B3GQS7;A0A024R3X4;P10809;Q53SE2;E7ESH4;E7EXB4;C9JL25;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 2 50.344 50.666 2;3 1.1662E-45 19022 20181213_JW_Orientia_Karp_1_3 231.62 182.32 259260000 96323000 65734000 10822000 23523000 23112000 12292000 27453000 0 6080 81 5284 37320;37321;37322;37323;37324;37325;37326;37327;37328;37329;37330;37331 23923;23924;23925;23926;23927;23928;23929;23930;23931 23926 9 LVQDVANNTNEEAGDGTTTATVLAR Deamidation (NQ) 2560.2253 0.22526809 81 B7Z597;B3GQS7;A0A024R3X4;P10809;Q53SE2;E7ESH4;E7EXB4;C9JL25;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 3 1 1 2 1 52.217 52.588 2;3 2.5144E-45 20755 20181213_JW_Orientia_Karp_1_2 229.93 181.4 76451000 28975000 24348000 10804000 6338800 0 0 5843200 142600 6081 81 5284 37332;37333;37334;37335;37336;37337;37338;37339;37340;37341 23932;23933;23934 23933 37;38;39 3 LVQELMQIVK Oxidation (M) 1215.6897 0.68969482 1428 Karp_02381 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.917 53.262 2 7.9096E-05 19239 20181213_JW_Orientia_Karp_2_1 148.94 80.098 77075000 16048000 18873000 14792000 10510000 6553000 8309000 1852000 138070 6082 1428 5285 37342;37343;37344;37345;37346;37347;37348;37349 23935;23936;23937;23938;23939;23940;23941 23938 1031 7 LVQELMQIVK Unmodified 1199.6948 0.6947802 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 62.478 62.721 2 7.2496E-06 27078 20181213_JW_Orientia_Karp_1_2 166.19 91.723 82560000 19967000 9025600 39231000 0 7962300 4650200 0 1724500 6083 1428 5285 37350;37351;37352;37353;37354;37355 23942;23943;23944;23945;23946 23943 5 LVQQNSIK Unmodified 928.53418 0.53418046 1323 Karp_01308 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 24.284 24.628 2 0.014725 5583 20181213_JW_Orientia_Karp_1_3 96.19 35.218 13554000 992190 0 2800200 1536200 1693200 1081100 3723100 1728300 6084 1323 5286 37356;37357;37358;37359;37360;37361;37362 23947;23948;23949;23950;23951 23948 5 LVRPPVQVYGIEGR Unmodified 1581.8991 0.89911075 1679 Q53HH2;P48047;H7C086 ATP5O ATP synthase subunit O, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.373 48.674 3 0.0010843 17631 20181213_JW_Orientia_Karp_1_3 135.04 93.502 121830000 34075000 41456000 18462000 9715300 8787000 5206400 0 4130900 6085 1679 5287 37363;37364;37365;37366;37367;37368;37369 23952;23953;23954;23955;23956;23957;23958 23954 7 LVSDEMVVELIEK Unmodified 1502.7902 0.79019673 943 F8W1A4;P54819-3;P54819-5;P54819-2;P54819;P54819-4;P54819-6;B4DLK2;G3V213;F8VZG5 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 69.95 70.079 2 7.0921E-05 31884 20181213_JW_Orientia_Karp_1_1 167.2 111.8 52461000 16942000 11536000 9708600 3198700 0 0 11076000 0 6086 943 5288 37370;37371;37372;37373;37374 23959;23960;23961;23962;23963 23959 5 LVSDEMVVELIEK Oxidation (M) 1518.7851 0.78511135 943 F8W1A4;P54819-3;P54819-5;P54819-2;P54819;P54819-4;P54819-6;B4DLK2;G3V213;F8VZG5 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 61.771 62.091 2 0.0069267 26369 20181213_JW_Orientia_Karp_1_3 101.71 57.402 14143000 0 0 6650500 0 5898100 0 0 1594000 6087 943 5288 37375;37376;37377 23964 23964 529 1 LVSISYLGAVDK Unmodified 1263.7075 0.70745338 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 58.126 58.454 2 5.0901E-08 24351 20181213_JW_Orientia_Karp_1_2 208.15 162.99 548240000 183220000 90567000 138660000 32928000 37955000 48420000 0 16501000 6088 1349 5289 37378;37379;37380;37381;37382;37383;37384;37385 23965;23966;23967;23968;23969;23970 23966 5 LVSNHSLHETSSVFVDSLTK Unmodified 2199.1172 0.11716161 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4E2F9;Q86TQ3 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 1 2 2 45.775 46.1 3;4 8.3119E-05 15994 20181213_JW_Orientia_Karp_1_3 120.74 96.202 214300000 43954000 78050000 62171000 7387800 4335200 2481400 4236500 11684000 6089 1615 5290 37386;37387;37388;37389;37390;37391;37392;37393;37394;37395;37396;37397;37398;37399;37400 23971;23972;23973;23974;23975;23976;23977 23974 7 LVSPGSANETSSILVESVTR Unmodified 2045.0641 0.064063405 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS 1 59.089 59.599 2 0.0072762 21573 20181213_JW_Orientia_Karp_3_2 91.592 56.538 5143900 0 0 0 0 0 0 0 5143900 6090 1520 5291 37401 23978 23978 1 LVSQDNFGFDLPAVEAATK Unmodified 2021.0106 0.010571271 506 D6W5C0;B2ZZ89;Q01082;Q01082-3;Q01082-2;F8W6C1 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 70.832 70.922 2 2.5914E-05 25642 20181213_JW_Orientia_Karp_3_1 174.59 119.33 51610000 12918000 12532000 16390000 0 0 1329800 8441100 0 6091 506 5292 37402;37403;37404;37405;37406 23979;23980;23981;23982 23982 4 LVSSAGTGVFWVK Unmodified 1349.7343 0.73433683 1247 Karp_00919 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 57.731 58.076 2 8.4379E-12 24113 20181213_JW_Orientia_Karp_1_2 246.86 177.26 1087200000 205630000 264010000 274650000 82890000 129130000 85109000 632430 45159000 6092 1247 5293 37407;37408;37409;37410;37411;37412;37413;37414;37415 23983;23984;23985;23986;23987;23988;23989;23990;23991;23992;23993 23985 11 LVSSDPEINTK Unmodified 1201.619 0.6190323 2008 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS 1 35.541 35.541 2 0.038566 11051 20181213_JW_Orientia_Karp_1_1 86.624 37.828 0 0 0 0 0 0 0 0 0 6093 2008 5294 37416 23994 23994 1 LVSVLQNK Unmodified 899.54402 0.54401687 628 P49588;B4DR45 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 38.591 38.833 2 0.014899 12195 20181213_JW_Orientia_Karp_1_3 95.909 27.527 31213000 6202900 16244000 7548200 0 1011500 0 0 206060 6094 628 5295 37417;37418;37419;37420;37421 23995 23995 1 LVTDLTK Unmodified 788.46437 0.46436956 792;620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;B7WNR0;B4DPR2;C9JKR2;H0YA55;D6RHD5;P02768-2;CON__P02769 ALB Serum albumin no no 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 37.139 37.472 2 0.012793 11084 20181213_JW_Orientia_Karp_3_1 133.81 45.17 1220700000 696880000 166320000 61746000 78640000 94248000 0 122880000 0 + 6095 620;792 5296 37422;37423;37424;37425;37426;37427 23996;23997 23997 2 LVTLPVSFAQLK Unmodified 1314.7911 0.79112343 1931 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 68.425 68.508 2 0.00026575 30268 20181213_JW_Orientia_Karp_1_3 157.78 73.163 27195000 16942000 0 8686300 0 0 1566600 0 0 6096 1931 5297 37428;37429;37430 23998;23999 23999 2 LVTTGVLK Unmodified 829.5273 0.52730417 1565 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 0 By MS/MS 1 39.375 39.574 2 0.036639 12568 20181213_JW_Orientia_Karp_1_3 90.777 8.4716 0 0 0 0 0 0 0 0 0 6097 1565 5298 37431 24000 24000 1 LVTTVTEIAG Unmodified 1002.5597 0.55972651 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;Q01518;Q01518-2;B4DNY3;B4DNA3;B4DUZ8 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By MS/MS 1 58.187 58.537 2 0.015207 24375 20181213_JW_Orientia_Karp_1_2 109.01 45.594 0 0 0 0 0 0 0 0 0 6098 498 5299 37432 24001 24001 1 LVVSTQTALA Unmodified 1001.5757 0.57571092 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 55.435 55.702 2 0.00052507 20629 20181213_JW_Orientia_Karp_2_1 133.86 99.61 1373400000 85764000 115010000 197640000 68413000 310160000 596400000 0 0 + 6099 792 5300 37433;37434;37435;37436;37437;37438;37439 24002;24003;24004;24005;24006;24007;24008;24009;24010 24008 9 LVYTGELSQPK Unmodified 1233.6605 0.66050319 1385 Karp_02124 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 43.125 43.445 2 0.0085525 15200 20181213_JW_Orientia_Karp_1_1 106.4 46.38 89817000 22318000 25216000 10994000 3941400 10879000 4019600 11164000 1284400 6100 1385 5301 37440;37441;37442;37443;37444;37445;37446;37447 24011;24012 24011 2 LWAEDGEFTSAR Unmodified 1380.631 0.63099397 40 A0A024R152;Q9Y2D5-6;Q9Y2D5-4;C9JVY5;A0A024R167;B4E2K2;Q9Y2D5;Q9Y2D5-5;Q9Y2D5-7 hCG_28765;AKAP2 A-kinase anchor protein 2 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 50.941 51.307 2 0.0012357 18437 20181213_JW_Orientia_Karp_2_3 131.09 87.805 57615000 13211000 12730000 0 11491000 8245000 9718000 1550900 668420 6101 40 5302 37448;37449;37450;37451;37452;37453;37454 24013;24014 24014 2 LWDLQQLR Unmodified 1070.5873 0.58727866 1750 P80217;P80217-2 IFI35 Interferon-induced 35 kDa protein yes no 0 0 0 0 By MS/MS 1 58.434 58.784 2 0.018712 24547 20181213_JW_Orientia_Karp_1_2 89.752 49.484 2597800 0 2597800 0 0 0 0 0 0 6102 1750 5303 37455 24015 24015 1 LWEEQLAAAK Unmodified 1157.6081 0.60807369 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314;A2VCQ4 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.415 48.716 2 0.00013797 16774 20181213_JW_Orientia_Karp_2_1 147.4 71.667 201750000 60029000 50644000 918800 40430000 17154000 15981000 0 16591000 6103 588 5304 37456;37457;37458;37459;37460;37461;37462 24016;24017;24018;24019;24020 24017 5 LWEPLVEEPPADQWK Unmodified 1835.9094 0.90940066 143 A0A024R745;Q16718;H7BYD0;Q16718-2;A0A024R736;A0A024R772 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 67.817 68.029 2 5.0609E-05 30045 20181213_JW_Orientia_Karp_1_3 148.13 99.689 54938000 0 14166000 26631000 0 6159100 3179100 0 4803200 6104 143 5305 37463;37464;37465;37466;37467;37468 24021;24022;24023;24024 24022 4 LWNSQSSIDQKLANQIN 5 Deamidation (NQ) 1962.9058 0.90583143 1776 Q07DS3 env yes yes 0 5 0 1 By MS/MS 1 38.108 38.759 3 0.029367 11753 20181213_JW_Orientia_Karp_3_1 53.981 19.037 35843000 0 0 0 0 0 0 35843000 0 6105 1776 5306 37469 24025 24025 1153;1154;1155;1974;1975;1976 0 LWNSQSSIDQKLANQINDLRQTVIWMGDR Oxidation (M);4 Deamidation (NQ) 3448.6569 0.65689773 961 Q4JNY0;Q4JNY1;G8HXG1;V9H0H3;P61567;P61566;P61570;Q9UKH3;P61565;Q902F9;Q902F8;Q69384;O71037;P63135 ERVK-7;ERVK-24;ERVK-25;ERVK-9;ERVK-21;HERVK_113;ERVK-8;ERVK-6;ERVK-19 Endogenous retrovirus group K member 7 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 24 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 25 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 9 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 21 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 113 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 8 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 6 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 19 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 7 Pol protein;Reverse transcriptase;Ribonuclease H;Integrase yes no 0 4 1 2 By MS/MS By matching 1 1 69.398 69.547 3 0.025502 31253 20181213_JW_Orientia_Karp_1_2 47.237 17.697 5461300 0 4640300 0 820990 0 0 0 0 6106 961 5307 37470;37471 24026 24026 335;336;1735;1736 539 1 LWTLVSEQTR Unmodified 1231.6561 0.65608651 895 E9PJD9;Q9BQQ5;E9PLL6;Q6NZ52;P46776 RPL27A;L27a 60S ribosomal protein L27a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 53.586 53.959 2 5.077E-12 21823 20181213_JW_Orientia_Karp_1_1 243.03 129.32 428980000 224340000 120030000 66253000 9268700 8171600 0 456910 448950 6107 895 5308 37472;37473;37474;37475;37476;37477;37478;37479 24027;24028;24029;24030;24031;24032 24027 6 LWYENPGVFSPAQLTQIK Unmodified 2090.0837 0.083676635 1927 Q92626 PXDN Peroxidasin homolog yes yes 0 0 0 0 By MS/MS 1 72.205 72.355 2 0.034292 33266 20181213_JW_Orientia_Karp_1_2 85.287 41.99 7484800 0 7484800 0 0 0 0 0 0 6108 1927 5309 37480 24033 24033 1 LWYTLDR Unmodified 965.49707 0.49706667 102 A0A024R4X0;P00387-2;P00387;P00387-3;Q6ZVI6 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 53.33 53.642 2 0.00016547 21626 20181213_JW_Orientia_Karp_1_1 183.89 128.39 44871000 0 0 29457000 3229000 6552500 5633400 0 0 6109 102 5310 37481;37482;37483;37484;37485;37486 24034;24035;24036;24037 24034 4 LYAIVNK Unmodified 819.48544 0.48543935 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 2 38.331 38.675 1;2 0.013691 11579 20181213_JW_Orientia_Karp_2_1 114.6 57.144 386150000 286820000 45801000 31226000 6715100 2430900 0 8761100 4396500 6110 1266 5311 37487;37488;37489;37490;37491;37492;37493;37494;37495;37496;37497;37498 24038;24039;24040;24041 24040 3 LYDAYELK Unmodified 1013.507 0.50696266 1573 V9HWE0;P08758;D6RBL5;E9PHT9;B4DNG6 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 45.29 45.59 2 0.0090088 16342 20181213_JW_Orientia_Karp_1_1 107.01 24.767 308930000 95229000 110740000 86842000 7015000 7769000 0 1329600 0 6111 1573 5312 37499;37500;37501;37502;37503;37504 24042;24043;24044;24045;24046 24042 5 LYDIDVAK Unmodified 935.4964 0.49639797 412 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 RPL23A 60S ribosomal protein L23a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 46.235 46.565 2 0.016011 16576 20181213_JW_Orientia_Karp_1_2 94.114 38.438 258770000 82024000 97291000 75701000 3412200 0 0 346800 0 6112 412 5313 37505;37506;37507;37508;37509 24047;24048;24049 24048 3 LYDTYGFPFDLTQDILK Unmodified 2048.0143 0.014259666 1382 Karp_02121 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 76.849 76.837 2 0.0036867 36186 20181213_JW_Orientia_Karp_1_1 119.62 71.501 19239000 7288100 6944000 0 0 1720500 0 3286800 0 6113 1382 5314 37510;37511;37512;37513;37514 24050;24051;24052 24051 3 LYELVLIVRPELSSTEIDK Unmodified 2216.2304 0.23040045 1254 Karp_00934 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 69.801 69.945 3 0.0027486 27823 20181213_JW_Orientia_Karp_2_2 102.39 86.968 162980000 44085000 36049000 28272000 0 12504000 9989900 31065000 1015000 6114 1254 5315 37515;37516;37517;37518;37519;37520;37521 24053;24054;24055;24056;24057;24058;24059 24057 7 LYEQLSGK Unmodified 936.49165 0.49164694 856 D9IAI1;P30086;V9HW05 HEL-S-34;PEBP1;HEL-210 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 33.596 34.033 2 0.0052984 9447 20181213_JW_Orientia_Karp_2_3 141.52 62.75 30930000 0 10653000 14349000 2140200 0 0 3787600 0 6115 856 5316 37522;37523;37524;37525;37526 24060;24061 24061 2 LYFTDLTAK Unmodified 1070.5648 0.56481189 1141 Karp_00453 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 55.751 56.02 2 0.026482 23155 20181213_JW_Orientia_Karp_1_1 80.165 40.062 29324000 7742300 10098000 7009200 1028600 3445400 0 0 0 6116 1141 5317 37527;37528;37529;37530;37531 24062;24063;24064 24062 3 LYGAEPANFLDVGGSADK Unmodified 1822.8737 0.87374344 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 62.742 63.037 2 1.4001E-06 27235 20181213_JW_Orientia_Karp_1_2 155.26 86.04 488540000 192210000 78963000 122050000 5919800 49890000 26986000 283340 12238000 6117 1121 5318 37532;37533;37534;37535;37536;37537;37538;37539 24065;24066;24067;24068;24069;24070;24071;24072 24066 8 LYGAEPANFLDVGGSADK Deamidation (NQ) 1823.8578 0.85775902 1121 Karp_00319 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 64.246 64.435 2 0.0013695 28335 20181213_JW_Orientia_Karp_1_1 118.16 61.749 25148000 10649000 8517900 4668900 0 0 0 0 1312100 6118 1121 5318 37540;37541;37542;37543 24073;24074 24073 498 2 LYGEFSEVELSK Unmodified 1399.6871 0.68711187 1161 Karp_00600 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 54.712 55.07 2 0.00069575 22125 20181213_JW_Orientia_Karp_1_2 143.4 90.274 156110000 27683000 49103000 46148000 7423800 14423000 9232100 256630 1838100 6119 1161 5319 37544;37545;37546;37547;37548;37549;37550;37551 24075;24076;24077;24078 24076 4 LYGLAFDTIK Unmodified 1139.6227 0.62266112 1280 Karp_01116 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 61.936 62.214 2 0.00096988 23121 20181213_JW_Orientia_Karp_3_2 124.92 76.831 50492000 26033000 14818000 0 0 8701000 0 0 940830 6120 1280 5320 37552;37553;37554;37555;37556;37557 24079;24080;24081;24082 24082 4 LYGPSSVSFADDFVR Unmodified 1658.794 0.79403655 115 A0A024R5K8;P50454;B4DN87;A8K259;E9PJH8;E9PIG2;E9PRS3;E9PNX1;E9PK86;E9PMI5;E9PR70;E9PPV6;E9PQ34;Q9NPA9 SERPINH1;ra-a47 Serpin H1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 64.754 64.955 2 1.5129E-08 25621 20181213_JW_Orientia_Karp_2_3 181.66 133.38 122520000 25080000 20941000 28371000 6558600 25837000 14523000 0 1208700 6121 115 5321 37558;37559;37560;37561;37562;37563;37564 24083;24084;24085;24086;24087;24088 24088 6 LYGSAGPPPTGEEDTAEK Unmodified 1817.8319 0.8319382 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 38.889 39.196 2 1.1227E-24 12388 20181213_JW_Orientia_Karp_1_2 225.33 173.61 146770000 21861000 51852000 23117000 20111000 8042600 10699000 11082000 0 6122 1585 5322 37565;37566;37567;37568;37569;37570;37571 24089;24090;24091;24092;24093;24094 24090 6 LYGSGDQEAWQK Unmodified 1380.631 0.63099397 1639 V9HW38;P28838-2;P28838;H0Y9Q1 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 39.351 39.701 2 0.0018546 12735 20181213_JW_Orientia_Karp_1_2 123.51 61.92 60179000 0 28759000 0 8228400 23192000 0 0 0 6123 1639 5323 37572;37573;37574 24095 24095 1 LYHEANFDEIR Unmodified 1405.6626 0.66262845 1280 Karp_01116 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 39.738 40.118 3 0.00074972 12612 20181213_JW_Orientia_Karp_2_3 111.63 28.881 120020000 0 48784000 32224000 16573000 0 2464100 19972000 0 6124 1280 5324 37575;37576;37577;37578;37579 24096;24097;24098;24099;24100 24099 4 LYIFGESYVNSSR Deamidation (NQ) 1534.7304 0.73037367 1300 Karp_01233 yes yes 0 1 0 0 By MS/MS By matching By matching By matching 1 1 1 1 64.022 64.222 2 0.029571 28326 20181213_JW_Orientia_Karp_1_1 89.301 42.409 70476000 24245000 32137000 13819000 0 0 0 275110 0 6125 1300 5325 37580;37581;37582;37583 24101 24101 733 1 LYIFGESYVNSSR Unmodified 1533.7464 0.74635808 1300 Karp_01233 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 59.42 59.708 2 3.082E-07 24851 20181213_JW_Orientia_Karp_1_3 184.44 99.284 70207000 0 0 28273000 17760000 13751000 10423000 0 0 6126 1300 5325 37584;37585;37586;37587 24102 24102 1 LYILQTR Unmodified 905.53345 0.53345218 1311 Karp_01258 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 46.891 47.073 2 0.030278 16880 20181213_JW_Orientia_Karp_1_2 89.142 28.354 25289000 11634000 10292000 3363100 0 0 0 0 0 6127 1311 5326 37588;37589;37590 24103;24104 24104 2 LYKEELEQTYHAK Unmodified 1650.8253 0.82533668 1613 P20700;E9PBF6;Q6DC98;B4DZT3 LMNB1 Lamin-B1 yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 31.474 31.749 4 0.008332 9133 20181213_JW_Orientia_Karp_1_1 77.74 42.82 31192000 13858000 11649000 4072600 1612000 0 0 0 0 6128 1613 5327 37591;37592;37593;37594 24105 24105 1 LYLADPMK Oxidation (M) 965.4892 0.4892041 1684 P49458;Q6P2S0;Q659G3;E9PE20;A0A024R3P3;P49458-2 SRP9;DKFZp564M2223 Signal recognition particle 9 kDa protein yes no 0 0 1 0 By MS/MS 1 40.495 40.944 2 0.018549 12690 20181213_JW_Orientia_Karp_2_1 86.953 16.686 12819000 0 0 0 12819000 0 0 0 0 6129 1684 5328 37595 24106 24106 1300 1 LYLNTIETILQGSK Unmodified 1591.8821 0.88212328 1105 Karp_00283 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.874 71.952 2 2.5391E-192 32873 20181213_JW_Orientia_Karp_1_2 388.54 304.66 1027000000 153960000 427680000 81404000 51229000 102780000 44287000 165660000 0 6130 1105 5329 37596;37597;37598;37599;37600;37601;37602 24107;24108;24109;24110;24111;24112;24113;24114;24115 24108 9 LYLNTIETILQGSK Deamidation (NQ) 1592.8661 0.86613887 1105 Karp_00283 yes yes 0 1 0 0 By MS/MS By MS/MS 1 1 72.283 72.381 2 3.5517E-21 32865 20181213_JW_Orientia_Karp_1_3 215.02 153.46 29102000 0 0 29102000 0 0 0 0 0 6131 1105 5329 37603;37604 24116;24117 24117 459 1 LYLSDGQYSDGYNTVTK Unmodified 1922.8898 0.88978743 1098 Karp_00262 yes yes 0 0 0 0 By MS/MS By matching 1 1 50.799 51.203 2 5.7099E-07 19364 20181213_JW_Orientia_Karp_1_3 162.48 109.99 3104300 0 0 2660900 0 0 0 0 443420 6132 1098 5330 37605;37606 24118;24119 24119 2 LYNFALK Unmodified 867.48544 0.48543935 1423 Karp_02309 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 49.557 49.827 2 0.011858 19128 20181213_JW_Orientia_Karp_1_1 122.98 36.467 24939000 9298700 3270700 2347200 6735500 0 3287400 0 0 6133 1423 5331 37607;37608;37609;37610;37611 24120 24120 1 LYPATYAQK Unmodified 1053.5495 0.54949617 1349 Karp_01525 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 2 1 2 1 35.322 35.691 2 0.0014161 10477 20181213_JW_Orientia_Karp_1_3 103.83 52.046 457420000 137800000 100950000 155360000 11935000 9631900 0 33521000 8225700 6134 1349 5332 37612;37613;37614;37615;37616;37617;37618;37619;37620;37621;37622;37623 24121;24122;24123;24124 24121 4 LYQASPADSGEYVCR Unmodified 1714.7621 0.7620845 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 42.437 42.754 2 1.8883E-27 14307 20181213_JW_Orientia_Karp_1_2 231.74 149.25 129060000 19720000 34830000 50423000 2901300 0 4316000 16868000 0 6135 195 5333 37624;37625;37626;37627;37628;37629 24125;24126;24127;24128;24129;24130;24131 24126 7 LYQPEYQEVSTEEQR Unmodified 1897.8694 0.86938634 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;B7Z602 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 44.105 44.105 2 0.0013549 15623 20181213_JW_Orientia_Karp_1_1 129.76 78.298 25540000 25540000 0 0 0 0 0 0 0 6136 545 5334 37630;37631 24132;24133 24132 2 LYQQHGAGLFDVTR Unmodified 1603.8107 0.81068967 634 B4DSE2;B4E0C7;Q53HP2;D3DQU2;O14773-2;O14773;B2R608;B4DE89 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 45.414 45.686 2;3 0.0066772 15025 20181213_JW_Orientia_Karp_3_1 103.46 49.865 471800000 163950000 127820000 149140000 4823300 0 20116000 5957900 0 6137 634 5335 37632;37633;37634;37635;37636;37637;37638;37639;37640 24134;24135;24136 24136 3 LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD Oxidation (M) 3361.4867 0.48672086 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;E9PNE6;B4E1Q1;A8K7Q2;Q96BE0;Q96H53;Q9NZ87;Q9NWW3 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 2 2 2 1 68.725 68.901 3 0.0011401 27991 20181213_JW_Orientia_Karp_2_3 58.21 40.119 73362000 11822000 10041000 20058000 3111600 7708000 4889300 11517000 4215200 6138 1586 5336 37641;37642;37643;37644;37645;37646;37647;37648;37649;37650;37651;37652 24137;24138;24139;24140;24141;24142 24141 1206;1207 6 LYSESLAR Unmodified 937.4869 0.48689592 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q5SX87;B4DHX4;P31150;Q5SX91 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 34.613 34.986 2 0.0049928 10266 20181213_JW_Orientia_Karp_1_3 122.74 42.28 63268000 15586000 17789000 16078000 1474100 2514600 0 6218500 3607900 6139 596 5337 37653;37654;37655;37656;37657;37658;37659 24143;24144;24145;24146;24147;24148;24149 24145 7 LYSILGTTLK Unmodified 1107.654 0.65396125 547 B4DY05;B3KXN4;V9HWG7;Q53H17;Q53GN4;Q59ER5;O75083-3;O75083 HEL-S-52;WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 58.293 58.553 2 0.0047695 22420 20181213_JW_Orientia_Karp_2_3 123.21 80.609 17629000 3688800 2955100 2621500 0 2790900 5073100 0 499550 6140 547 5338 37660;37661;37662;37663;37664;37665 24150 24150 1 LYSPSQIGAFVLMK Unmodified 1552.8323 0.83233632 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;Q2F839 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By matching 1 1 70.333 70.382 2 0.015571 32041 20181213_JW_Orientia_Karp_1_1 89.403 53.989 11630000 8314100 0 3315700 0 0 0 0 0 6141 721 5339 37666;37667 24151 24151 1 LYSPSQIGAFVLMK Oxidation (M) 1568.8273 0.82725094 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;Q2F839 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 1 0 By MS/MS 1 65.8 65.898 3 0.023885 28653 20181213_JW_Orientia_Karp_1_3 96.371 71.407 0 0 0 0 0 0 0 0 0 6142 721 5339 37668 24152 24152 429 1 LYSSTISSDTPEK Unmodified 1426.6828 0.68275477 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 37.639 37.922 2 2.9079E-34 11967 20181213_JW_Orientia_Karp_1_1 246.08 174.63 970190000 429390000 346760000 10110000 39274000 46500000 0 98153000 0 6143 1166 5340 37669;37670;37671;37672;37673;37674;37675;37676;37677 24153;24154;24155;24156;24157;24158;24159 24153 7 LYTLVLTDPDAPSR Unmodified 1559.8195 0.81952302 856 D9IAI1;P30086;B4DRT4 HEL-S-34;PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 61.682 61.991 2 1.3949E-06 21619 20181213_JW_Orientia_Karp_3_1 179.6 135.41 36373000 9466400 10260000 8383700 3312600 0 0 4950300 0 6144 856 5341 37678;37679;37680;37681;37682;37683 24160;24161;24162 24161 3 LYTLVTYVPVTTFK Unmodified 1643.9174 0.91744615 444 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899-3;P62899;P62899-2;Q76N53 RPL31 60S ribosomal protein L31 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 70.955 71.075 2 4.1337E-25 32038 20181213_JW_Orientia_Karp_1_3 229.64 163.04 888580000 174370000 322500000 141850000 43519000 39068000 28397000 115820000 23051000 6145 444 5342 37684;37685;37686;37687;37688;37689;37690;37691 24163;24164;24165;24166;24167;24168;24169;24170 24165 8 LYWIDPTNFVSMADGTFPDIANR Oxidation (M) 2658.2424 0.24243848 1395 Karp_02151 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 1 76.247 76.243 2;3 9.1247E-21 35865 20181213_JW_Orientia_Karp_1_2 191.51 155.85 439100000 121020000 82952000 123740000 17967000 8666600 24700000 58697000 1357400 6146 1395 5343 37692;37693;37694;37695;37696;37697;37698;37699;37700;37701;37702;37703;37704;37705 24171;24172;24173;24174;24175;24176;24177;24178;24179;24180 24172 991 9 LYWIDPTNFVSMADGTFPDIANR Unmodified 2642.2475 0.24752385 1395 Karp_02151 yes yes 0 0 0 0 By matching By MS/MS 1 1 77.7 77.724 2 0.018861 36885 20181213_JW_Orientia_Karp_1_2 66.673 31.37 10424000 5130400 5293600 0 0 0 0 0 0 6147 1395 5343 37706;37707 24181 24181 1 MAAAGQEKGYLTQTAAALDK Oxidation (M);Deamidation (NQ) 2053.999 0.99902031 1912 Q8NEY3 SPATA4 Spermatogenesis-associated protein 4 yes yes 0 1 1 1 By MS/MS 1 35.524 35.874 3 0.029548 10753 20181213_JW_Orientia_Karp_1_2 58.672 22.644 0 0 0 0 0 0 0 0 0 6148 1912 5344 37708 24182 24182 2046 1 MAAPAQQTTQPGGGKRK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1785.8679 0.86794655 78 H3BNW0;A0A024R388;Q9NXG2 THUMPD1 THUMP domain-containing protein 1 yes no 1 2 1 2 By MS/MS 1 42.458 42.907 3 0.038171 13696 20181213_JW_Orientia_Karp_2_1 44.925 15.307 0 0 0 0 0 0 0 0 0 6149 78 5345 37709 24183 24183 1278;1279;1280 1 MAAPTANKAASLGCNNK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1776.8135 0.81346814 347 A8K332;Q8IYB1 MB21D2 Protein MB21D2 yes no 1 1 1 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 48.515 48.874 2 0.014843 18364 20181213_JW_Orientia_Karp_1_1 74.962 6.8296 77796000 19275000 15601000 14354000 11499000 8207600 0 308400 8551300 6150 347 5346 37710;37711;37712;37713;37714;37715;37716 24184 24184 137 237 1 MADHMMAMNHGR Acetyl (Protein N-term);2 Oxidation (M) 1474.5574 0.55739357 860 D9ZGF1;Q99967-2;Q99967 CITED2 Cbp/p300-interacting transactivator 2 yes no 1 0 2 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.433 45.608 2 0.018946 15737 20181213_JW_Orientia_Karp_1_2 67.993 16.716 98297000 0 0 4789000 0 93508000 0 0 0 6151 860 5347 37717;37718;37719;37720 24185;24186;24187 24185 490;491;492;493 2 MADNLDEFIEEQKAR Oxidation (M);Deamidation (NQ) 1824.82 0.81999331 866 E5RGA5;E5RI67;F2Z2M5;Q1MSJ5-1;Q1MSJ5 CSPP1 Centrosome and spindle pole-associated protein 1 yes no 0 1 1 1 By MS/MS 1 64.345 64.754 3 0.025529 24688 20181213_JW_Orientia_Karp_3_2 80.905 15.41 0 0 0 0 0 0 0 0 0 6152 866 5348 37721 24188 24188 310 495 1 MAEAASGAGGTSLEGERGK Acetyl (Protein N-term);Oxidation (M) 1835.832 0.83195498 1481 M0QYD2;Q9HCE9-2;Q9HCE9 ANO8 Anoctamin;Anoctamin-8 yes no 1 0 1 1 By MS/MS 1 69.197 69.445 2 0.01355 28011 20181213_JW_Orientia_Karp_2_1 92.247 9.9859 21246000 0 0 0 21246000 0 0 0 0 6153 1481 5349 37722 24189 24189 1098 1 MAEANQAFSHLITK Oxidation (M) 1575.7715 0.77152697 1093 Karp_00242 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.312 42.632 3 0.00011062 13234 20181213_JW_Orientia_Karp_2_2 159.58 122.4 1430900000 472050000 343100000 272300000 17389000 42934000 57596000 198560000 26938000 6154 1093 5350 37723;37724;37725;37726;37727;37728;37729;37730 24190;24191;24192;24193;24194;24195;24196;24197 24194 603 7 MAEANQAFSHLITK Oxidation (M);Deamidation (NQ) 1576.7555 0.75554256 1093 Karp_00242 yes yes 0 1 1 0 By MS/MS By MS/MS 1 1 45.334 45.334 3 0.016579 14818 20181213_JW_Orientia_Karp_2_2 84.892 48.045 65192000 65192000 0 0 0 0 0 0 0 6155 1093 5350 37731;37732 24198;24199 24199 443;1799 603 2 MAEANQAFSHLITK Unmodified 1559.7766 0.77661235 1093 Karp_00242 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 1 45.646 45.939 2;3 2.815E-25 16606 20181213_JW_Orientia_Karp_1_1 236.08 162.19 1270300000 296310000 395960000 398290000 52486000 66922000 31867000 14012000 14406000 6156 1093 5350 37733;37734;37735;37736;37737;37738;37739;37740;37741;37742;37743;37744;37745 24200;24201;24202;24203;24204;24205;24206;24207;24208 24201 9 MAEANQAFSHLITK Deamidation (NQ) 1560.7606 0.76062794 1093 Karp_00242 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 2 1 1 1 48.043 48.344 2;3 0.0066446 15599 20181213_JW_Orientia_Karp_3_2 106.13 43.206 92164000 20266000 20875000 30719000 7878700 3662600 5343300 0 3419300 6157 1093 5350 37746;37747;37748;37749;37750;37751;37752;37753 24209;24210;24211;24212;24213 24213 443;1799 5 MAEFGSCHR Oxidation (M) 1109.4382 0.43824794 1376 Karp_02113 yes yes 0 0 1 0 By MS/MS 1 11.338 12.349 2 0.030857 1981 20181213_JW_Orientia_Karp_3_2 73.665 55.679 805800 0 0 0 0 0 0 0 805800 6158 1376 5351 37754 24214 24214 1 MAESENMISPFVEK Oxidation (M) 1626.7269 0.72694455 1454 Karp_02591 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 1 51.312 51.646 2 9.1688E-46 22073 20181213_JW_Orientia_Karp_1_1 256.95 164.71 233520000 73177000 61209000 44328000 16815000 10107000 17942000 622250 9323900 6159 1454 5352 37755;37756;37757;37758;37759;37760;37761;37762;37763;37764;37765;37766;37767;37768;37769 24215;24216;24217;24218;24219;24220;24221;24222;24223 24216 1062;1063 9 MAESENMISPFVEK 2 Oxidation (M) 1642.7219 0.72185917 1454 Karp_02591 yes yes 0 0 2 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.304 46.624 2 1.956E-25 16354 20181213_JW_Orientia_Karp_1_3 232.78 144.62 206080000 41855000 26669000 31027000 31402000 16215000 32159000 7831200 18923000 6160 1454 5352 37770;37771;37772;37773;37774;37775;37776;37777 24224;24225;24226;24227;24228 24224 1062;1063 5 MAESENMISPFVEK 2 Oxidation (M);Deamidation (NQ) 1643.7059 0.70587475 1454 Karp_02591 yes yes 0 1 2 0 By MS/MS By matching 1 1 48.398 48.823 2 0.038461 17749 20181213_JW_Orientia_Karp_1_3 44.829 14.623 4217100 0 0 4092400 0 0 0 124670 0 6161 1454 5352 37778;37779 24229 24229 1062;1063 0 MAEYMSETSATAQSALSELK 2 Oxidation (M) 2178.9661 0.9660652 1316 Karp_01272 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.793 52.134 2 2.942E-48 18631 20181213_JW_Orientia_Karp_2_1 246.66 176.81 46899000 12171000 16766000 0 3686300 5722900 0 8553400 0 6162 1316 5353 37780;37781;37782;37783;37784 24230;24231;24232;24233;24234;24235 24233 869;870 6 MAEYMSETSATAQSALSELK Oxidation (M) 2162.9712 0.97115058 1316 Karp_01272 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 1 1 55.915 56.2 2 5.975E-256 21454 20181213_JW_Orientia_Karp_1_3 408.77 340.26 119000000 34320000 52850000 24586000 2544600 2900000 0 0 1802400 6163 1316 5353 37785;37786;37787;37788;37789;37790;37791;37792;37793;37794 24236;24237;24238;24239;24240;24241;24242;24243 24240 869;870 8 MAEYMSETSATAQSALSELK Unmodified 2146.9762 0.97623595 1316 Karp_01272 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 60.704 60.968 2 6.0716E-75 25977 20181213_JW_Orientia_Karp_1_2 279.71 216.05 55075000 16380000 14899000 21385000 0 0 0 0 2411100 6164 1316 5353 37795;37796;37797;37798 24244 24244 1 MAGAIIENMSTK 2 Oxidation (M) 1296.6054 0.60537285 726 E9PM23;Q7Z430;Q8N2N3;B7Z787;Q5T9L3-3;Q5T9L3;Q5T9L3-2 WLS Protein wntless homolog yes no 0 0 2 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 54.842 55.112 2 0.031435 22455 20181213_JW_Orientia_Karp_1_1 70.256 27.173 223000000 73368000 68718000 75205000 1957500 0 3750500 0 0 6165 726 5354 37799;37800;37801;37802;37803 24245 24245 431 1 MAGAIIENMSTK Oxidation (M) 1280.6105 0.61045823 726 E9PM23;Q7Z430;Q8N2N3;B7Z787;Q5T9L3-3;Q5T9L3;Q5T9L3-2 WLS Protein wntless homolog yes no 0 0 1 0 By MS/MS By MS/MS 1 1 61.488 61.587 2 0.0095607 26687 20181213_JW_Orientia_Karp_1_1 95.358 15.129 79154000 53258000 0 25896000 0 0 0 0 0 6166 726 5354 37804;37805 24246;24247 24246 431 2 MAIMLYVPK Acetyl (Protein N-term);Oxidation (M) 1122.5817 0.58172428 521 B3KRM8 TSN yes yes 1 0 1 0 By MS/MS 1 50.075 50.726 2 0.016021 17142 20181213_JW_Orientia_Karp_3_1 83.287 16.858 0 0 0 0 0 0 0 0 0 6167 521 5355 37806 24248 24248 339 1 MAKGQSLQDPFLNALR Acetyl (Protein N-term);3 Deamidation (NQ) 1832.8978 0.8978497 1916 Q8TCX0 yes yes 1 3 0 1 By MS/MS By matching 1 1 47.758 47.933 2 0.037987 17682 20181213_JW_Orientia_Karp_1_1 43.604 10.516 35480000 14520000 20959000 0 0 0 0 0 0 6168 1916 5356 37807;37808 24249 24249 2053;2054 1 MALDIEIATYR Oxidation (M) 1310.654 0.6540376 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;H7C5W5;B3KWQ6;P41219;P41219-2 HEL113;VIM;PRPH Vimentin;Peripherin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 1 2 57.572 57.919 2 1.5315E-13 23649 20181213_JW_Orientia_Karp_1_2 223.36 116.68 1171900000 247880000 364040000 195450000 56680000 103710000 80933000 2212600 120950000 6169 1571 5357 37809;37810;37811;37812;37813;37814;37815;37816;37817;37818;37819;37820 24250;24251;24252;24253;24254;24255;24256;24257;24258;24259;24260;24261 24252 1194 12 MALDIEIATYR Unmodified 1294.6591 0.65912298 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;H7C5W5;B3KWQ6;P41219;P41219-2 HEL113;VIM;PRPH Vimentin;Peripherin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 1 1 1 62.792 63.088 2 5.1568E-13 27494 20181213_JW_Orientia_Karp_1_1 218.94 117.48 390910000 146220000 72259000 63974000 10028000 55307000 31742000 164530 11216000 6170 1571 5357 37821;37822;37823;37824;37825;37826;37827;37828;37829;37830;37831 24262;24263;24264;24265;24266;24267;24268;24269;24270 24262 9 MALVLDPER Oxidation (M) 1058.543 0.54303059 1396 Karp_02152 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 2 46.13 46.432 2 0.000666 16379 20181213_JW_Orientia_Karp_1_2 140.5 71.078 205310000 47979000 51613000 44801000 18688000 16419000 17659000 0 8150800 6171 1396 5358 37832;37833;37834;37835;37836;37837;37838;37839;37840;37841 24271;24272;24273;24274;24275;24276;24277 24272 997 7 MALVLDPER Unmodified 1042.5481 0.54811597 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 53.287 53.603 2 0.0052045 19587 20181213_JW_Orientia_Karp_2_3 103.56 58.482 225120000 3906300 103030000 30430000 33043000 18646000 35900000 0 157890 6172 1396 5358 37842;37843;37844;37845;37846;37847;37848;37849 24278;24279;24280;24281;24282;24283 24283 6 MAPYIYGK Oxidation (M) 957.46299 0.46298935 1347 Karp_01523 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 36.549 36.88 2 0.022394 11790 20181213_JW_Orientia_Karp_1_1 84.359 58.622 306230000 135490000 67346000 58031000 0 2757700 8411500 25963000 8232700 6173 1347 5359 37850;37851;37852;37853;37854;37855;37856 24284;24285;24286;24287;24288 24284 916 5 MAPYIYGK Unmodified 941.46807 0.46807473 1347 Karp_01523 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 41.394 41.71 2 0.012747 13827 20181213_JW_Orientia_Karp_1_2 99.384 51.142 177420000 82460000 43129000 28621000 4911400 0 5579200 12722000 0 6174 1347 5359 37857;37858;37859;37860;37861;37862 24289;24290 24289 2 MAPYQGPDAVPGALDYK Oxidation (M) 1807.8451 0.84508585 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 53.317 53.674 2 1.2205E-05 20991 20181213_JW_Orientia_Karp_1_3 148.85 110.45 309430000 72716000 107550000 72503000 5999000 13146000 11132000 25676000 700280 6175 1509 5360 37863;37864;37865;37866;37867;37868;37869;37870 24291;24292;24293;24294 24293 1116 4 MAQDFSLR Oxidation (M) 982.45422 0.45421558 1139 Karp_00451 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 38.46 38.818 2 0.00466 12731 20181213_JW_Orientia_Karp_1_1 117.89 55.927 58769000 23312000 15270000 12223000 3229000 0 1359200 2858500 518410 6176 1139 5361 37871;37872;37873;37874;37875;37876;37877 24295;24296;24297;24298;24299;24300 24295 673 6 MAQDFSLR Unmodified 966.4593 0.45930096 1139 Karp_00451 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 43.163 43.505 2 0.038044 15271 20181213_JW_Orientia_Karp_1_1 78.113 30.455 47490000 19893000 17387000 5756800 0 0 0 4372800 81168 6177 1139 5361 37878;37879;37880;37881;37882 24301;24302 24301 2 MAQLPTHMLMLLQK Acetyl (Protein N-term);2 Oxidation (M);2 Deamidation (NQ) 1729.8453 0.84528554 1472 L8ECC7 USPL1 yes yes 1 2 2 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 47.241 47.56 2 0.042903 17121 20181213_JW_Orientia_Karp_1_2 108.57 6.0389 80808000 30557000 25602000 0 6070300 7508200 6076700 0 4993800 6178 1472 5362 37883;37884;37885;37886;37887;37888 24303 24303 1889;1890 1 MAQWNQLQQLDTR Oxidation (M);4 Deamidation (NQ) 1650.7196 0.71955098 695 B5BTZ6;P40763-3;P40763-2;P40763;K7EP08 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 0 4 1 0 By MS/MS 1 43.369 43.52 2 0.038991 13793 20181213_JW_Orientia_Karp_2_2 42.338 10.58 0 0 0 0 0 0 0 0 0 6179 695 5363 37889 24304 24304 1587;1588;1589 1 MASALEQFVNSVRQLSAQGL Acetyl (Protein N-term);2 Deamidation (NQ) 2192.0783 0.078333261 1041 J3QL22 COPS3 yes yes 1 2 0 1 By matching By matching By MS/MS By matching 1 1 1 1 55.382 55.645 3 0.033706 20532 20181213_JW_Orientia_Karp_2_2 46.663 11.572 38598000 0 6739000 10930000 0 11377000 9551100 0 0 6180 1041 5364 37890;37891;37892;37893 24305 24305 1780;1781 1 MASTEGANNMPKQVEVR Acetyl (Protein N-term);3 Deamidation (NQ) 1905.8448 0.84482785 1671 P43004-3;P43004 SLC1A2 Excitatory amino acid transporter 2 yes no 1 3 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 65.377 65.507 2 0.024126 29056 20181213_JW_Orientia_Karp_1_1 54.65 14.135 41025000 10390000 10309000 11695000 0 5122800 3508300 0 0 6181 1671 5365 37894;37895;37896;37897;37898 24306 24306 1118;1119;1954 1 MASVGLSDIAMDTTVTHATSHGR Oxidation (M) 2373.1053 0.10529307 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 2 1 1 46.338 46.558 4 0.0087507 17060 20181213_JW_Orientia_Karp_1_1 66.893 44.457 53950000 14473000 30691000 0 0 4082800 4703200 0 0 6182 195 5366 37899;37900;37901;37902;37903 24307;24308;24309 24307 152 3 MATEQGRMKFTR 2 Oxidation (M);Deamidation (NQ) 1487.6861 0.68608278 650 Q49AK0;B4DVZ8;P09960-4;P09960 LTA4H Leukotriene A(4) hydrolase;Leukotriene A-4 hydrolase yes no 0 1 2 2 By MS/MS 1 48.277 48.277 2 0.0086872 17992 20181213_JW_Orientia_Karp_1_1 89.029 16.933 12486000 12486000 0 0 0 0 0 0 0 6183 650 5367 37904 24310 24310 1556 402;403 0 MATEVAADALGEEWK Oxidation (M) 1635.745 0.74503745 285 Q96DV6;A2A3R6;P62753;A2A3R7;A2A3R5 RPS6 40S ribosomal protein S6 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 2 54.283 54.553 2 1.3393E-49 21525 20181213_JW_Orientia_Karp_1_3 269.44 204.16 104070000 30341000 38269000 24531000 5278200 5651800 0 0 0 6184 285 5368 37905;37906;37907;37908;37909;37910;37911;37912 24311;24312;24313;24314;24315;24316;24317;24318;24319 24315 202 9 MATEVAADALGEEWK Unmodified 1619.7501 0.75012283 285 Q96DV6;A2A3R6;P62753;A2A3R7;A2A3R5 RPS6 40S ribosomal protein S6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 58.197 58.379 2 4.6849E-13 24016 20181213_JW_Orientia_Karp_1_3 199.4 132.19 83787000 22083000 35188000 26516000 0 0 0 0 0 6185 285 5368 37913;37914;37915 24320;24321;24322;24323 24322 4 MATNAAAQNAIK Oxidation (M) 1218.6027 0.60267073 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 25.049 25.41 2 0.01072 6010 20181213_JW_Orientia_Karp_1_2 93.096 44.301 6079000 864560 1974800 1201600 0 0 95485 1232800 709780 6186 2016 5369 37916;37917;37918;37919;37920;37921 24324;24325 24325 1541 2 MATSGANGPGSATASASNPR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1862.8065 0.80646851 1028 J3KNE6;Q5T4K5;Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 yes no 1 1 1 0 By MS/MS By matching By matching 1 1 1 54.359 54.73 2 0.032223 20019 20181213_JW_Orientia_Karp_2_2 51.726 17.033 11116000 0 0 0 0 4923500 5691200 0 500780 6187 1028 5370 37922;37923;37924 24326 24326 377 1 MAVTFIGNSTAIQELFK Oxidation (M);Deamidation (NQ) 1885.9496 0.94955092 1566;602 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q6P602;A4UCU2;B4DMJ5 TUBB Tubulin beta chain no no 0 1 1 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 74.966 74.976 2 2.3628E-11 34939 20181213_JW_Orientia_Karp_1_1 180.3 137.9 43943000 16421000 0 17953000 191140 3470200 0 5907200 0 6188 1566;602 5371 37925;37926;37927;37928;37929 24327;24328;24329 24327 213;1536 376 3 MAVTFIGNSTAIQELFK Deamidation (NQ) 1869.9546 0.9546363 1566;602 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q6P602;A4UCU2;B4DMJ5 TUBB Tubulin beta chain no no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 75.921 75.92 2 7.208E-54 35310 20181213_JW_Orientia_Karp_1_3 266.85 207.01 50587000 16027000 10825000 18713000 1826800 2224200 971180 0 0 6189 1566;602 5371 37930;37931;37932;37933;37934;37935 24330;24331 24331 213;1536 2 MAWPAPTCWRMPLTK 2 Oxidation (M) 1876.8787 0.87865136 1462 L0R6K6 MTFP1 yes yes 0 0 2 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 57.528 57.943 3 0.024612 24180 20181213_JW_Orientia_Karp_1_2 62.162 12.007 161460000 0 77839000 0 36061000 0 36696000 0 10868000 6190 1462 5372 37936;37937;37938;37939 24332;24333 24332 1079;1080 0 MCKDWLSNK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1239.5264 0.52639425 1475 L8ECN7 NFATC1 yes yes 1 1 1 1 By MS/MS By matching By matching 1 1 1 25.122 25.388 2 0.030449 5910 20181213_JW_Orientia_Karp_1_3 63.419 13.977 1933900 0 0 1105500 639320 0 189030 0 0 6191 1475 5373 37940;37941;37942 24334 24334 1000 1 MCNGKNGILEDSQK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1652.7022 0.70218636 515 B3KQG8 yes yes 1 2 1 1 By MS/MS 1 41.707 42.359 2 0.021735 13488 20181213_JW_Orientia_Karp_3_1 63.624 15.73 0 0 0 0 0 0 0 0 0 6192 515 5374 37943 24335 24335 189;190 334 1 MDADEGQDMSQVSGK Acetyl (Protein N-term);2 Oxidation (M);Deamidation (NQ) 1671.624 0.62399562 300 A4D262;C9JTB0;R9R4D9;Q13422-8;Q13422-6;Q13422-5;Q13422-3;Q13422-2;Q13422-7;Q13422 LOC389490;IKZF1 DNA-binding protein Ikaros yes no 1 1 2 0 By MS/MS 1 87.036 87.036 2 0.033417 39360 20181213_JW_Orientia_Karp_1_1 44.188 27.275 1925400 1925400 0 0 0 0 0 0 0 6193 300 5375 37944 24336 24336 1363 1 MDAEQDPNVQVDHLNLLK Oxidation (M) 2094.0052 0.0051683175 390 B4DZX0;Q53GX6;A8K7Q1;Q02818;C9JKZ2 NUCB1 Nucleobindin-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 52.583 52.983 3 0.0082966 19083 20181213_JW_Orientia_Karp_2_2 90.706 63.276 38337000 0 0 0 8551800 14435000 12707000 2642100 0 6194 390 5376 37945;37946;37947;37948 24337;24338;24339 24338 272 3 MDAEVPDVNIEGPDAK Oxidation (M) 1714.772 0.77198048 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 51.945 52.29 2 2.1066E-05 20151 20181213_JW_Orientia_Karp_1_3 157.09 104.81 119080000 22477000 16645000 29000000 13166000 14558000 13349000 8865000 1019800 6195 1782 5377 37949;37950;37951;37952;37953;37954;37955;37956 24340;24341;24342;24343;24344;24345;24346;24347 24342 1417 8 MDAILTEAIK Oxidation (M) 1119.5846 0.58456105 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;B0QZK4;Q5SWC8;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 49.935 50.212 2 0.0023126 19239 20181213_JW_Orientia_Karp_1_1 111.46 62.661 61582000 27848000 29870000 0 0 3349100 0 0 514730 6196 1846 5378 37957;37958;37959;37960;37961 24348;24349;24350 24348 1466 3 MDAILTEAIK Unmodified 1103.5896 0.58964643 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;B0QZK4;Q5SWC8;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 55.095 55.415 2 0.00090067 22333 20181213_JW_Orientia_Karp_1_2 126.31 62.106 55847000 29808000 25948000 0 0 0 0 0 90807 6197 1846 5378 37962;37963;37964 24351;24352 24352 2 MDAMLLRQCPTQGTR Oxidation (M);2 Deamidation (NQ) 1794.8063 0.80627428 323 A6NKX1 FAM223B Protein FAM223B yes yes 0 2 1 1 By MS/MS 1 62.051 62.5 2 0.020056 24523 20181213_JW_Orientia_Karp_2_1 76.228 8.0957 0 0 0 0 0 0 0 0 0 6198 323 5379 37965 24353 24353 1384;1385 220;221 1 MDATANDVPSPYEVR Oxidation (M) 1679.7461 0.74610008 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.618 46.938 2 4.6028E-14 16133 20181213_JW_Orientia_Karp_2_3 209.25 151.36 73273000 16924000 15531000 10440000 7169500 3926500 9275600 2912700 7095100 6199 516 5380 37966;37967;37968;37969;37970;37971;37972;37973 24354;24355;24356;24357;24358;24359;24360;24361 24360 336 8 MDATANDVPSPYEVR Oxidation (M);Deamidation (NQ) 1680.7301 0.73011567 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 1 1 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.451 48.796 2 8.9369E-06 17078 20181213_JW_Orientia_Karp_2_3 166.48 115.19 49495000 8359200 11799000 9085800 7483400 4123900 4731800 196450 3715300 6200 516 5380 37974;37975;37976;37977;37978;37979;37980;37981 24362;24363;24364;24365 24364 191 336 4 MDATANDVPSPYEVR Unmodified 1663.7512 0.75118546 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.638 49.964 2 8.3912E-09 18652 20181213_JW_Orientia_Karp_1_2 187.74 122.5 96488000 18972000 25043000 25732000 8557300 0 4778400 0 13406000 6201 516 5380 37982;37983;37984;37985;37986;37987 24366;24367;24368;24369;24370;24371;24372 24367 7 MDDGTNEYKIIMLNR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1870.8441 0.84409957 1769 Q05BT4 PCNX yes yes 1 1 1 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 3 2 3 3 1 60.634 60.878 2 0.0065125 23820 20181213_JW_Orientia_Karp_2_2 91.469 34.32 159080000 27101000 16459000 41511000 18265000 34112000 21075000 560300 0 6202 1769 5381 37988;37989;37990;37991;37992;37993;37994;37995;37996;37997;37998;37999;38000;38001;38002;38003;38004 24373;24374;24375;24376;24377 24376 1152 1384 4 MDDREDLVYQAK Acetyl (Protein N-term);Oxidation (M) 1539.6875 0.68752257 1728 V9HW98;P62258;B4DJF2;I3L3T1;B4DJB0;I3L0W5 HEL2;YWHAE 14-3-3 protein epsilon yes no 1 0 1 1 By MS/MS By matching By matching 1 1 1 43.534 43.717 2 0.032734 15336 20181213_JW_Orientia_Karp_1_1 86.014 49.68 185980000 71758000 52702000 61517000 0 0 0 0 0 6203 1728 5382 38005;38006;38007 24378 24378 1 MDDTLFQLK Acetyl (Protein N-term);Oxidation (M) 1167.5482 0.54817555 658 B4DXN3;F8VUA2;F8VVT7;Q9HD42 CHMP1A Charged multivesicular body protein 1a yes no 1 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 70.886 71.005 2 0.00047444 28469 20181213_JW_Orientia_Karp_2_2 140.14 74.915 19996000 0 2237400 2786000 0 4409800 3180400 7382800 0 6204 658 5383 38008;38009;38010;38011;38012 24379;24380;24381 24379 406 3 MDEAISSYIR Oxidation (M) 1199.5492 0.54923818 1360 Karp_01811 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 46.594 46.777 2 0.00074931 16720 20181213_JW_Orientia_Karp_1_2 126.31 81.45 51646000 12288000 14537000 24821000 0 0 0 0 0 6205 1360 5384 38013;38014;38015;38016;38017 24382;24383;24384;24385;24386 24383 938 5 MDEIKSQELNLEGQRK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1976.9361 0.9360857 303 H0Y4M1;C9J1E6;A4FU69-5 EFCAB5 yes no 1 2 1 2 By MS/MS 1 52.534 52.785 2 0.022805 19219 20181213_JW_Orientia_Karp_2_3 65.695 21.395 0 0 0 0 0 0 0 0 0 6206 303 5385 38018 24387 24387 117;1364 212 1 MDELQLFR Oxidation (M) 1066.5117 0.51173046 1708 V9HW80;P55072;C9JUP7;C9IZA5 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 55.211 55.493 2 0.010994 22155 20181213_JW_Orientia_Karp_1_3 98.629 52.614 20783000 7181700 5788500 5744200 0 2004300 0 0 64451 6207 1708 5386 38019;38020;38021;38022;38023 24388;24389 24389 1330 2 MDELQLFR Unmodified 1050.5168 0.51681584 1708 V9HW80;P55072;C9JUP7;C9IZA5 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 59.355 59.62 2 0.0048222 25098 20181213_JW_Orientia_Karp_1_2 125.31 70.765 25249000 5517300 7210300 11844000 0 0 0 0 677340 6208 1708 5386 38024;38025;38026;38027 24390;24391;24392 24391 3 MDENQFVAVTSTNAAK Unmodified 1724.8039 0.80394931 1795;1814 Q6DEN2;Q14195-2;Q8IXW6;Q14195;B4DLZ4;H0YBT4;Q96I11;B3KT07;B3KV96;E9PD68;B3KXQ5;X5DQV1;X5DNI1;Q14194;Q14194-2;Q53ET2;Q59GB4;Q16555-2;Q16555;Q86U75;Q8NAN9 DPYSL3;CRMP1;DPYSL2 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 1;Dihydropyrimidinase-related protein 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 49.471 49.733 2 0.00010518 18543 20181213_JW_Orientia_Karp_1_2 147.7 83.472 35943000 10655000 12632000 9029800 0 2213600 0 0 1412000 6209 1795;1814 5387 38028;38029;38030;38031;38032 24393;24394;24395 24394 2 MDENQFVAVTSTNAAK Oxidation (M) 1740.7989 0.79886394 1795;1814 Q6DEN2;Q14195-2;Q8IXW6;Q14195;B4DLZ4;H0YBT4;Q96I11;B3KT07;B3KV96;E9PD68;B3KXQ5;X5DQV1;X5DNI1;Q14194;Q14194-2;Q53ET2;Q59GB4;Q16555-2;Q16555;Q86U75;Q8NAN9 DPYSL3;CRMP1;DPYSL2 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 1;Dihydropyrimidinase-related protein 2 no no 0 0 1 0 By MS/MS 1 45.663 45.862 2 0.007199 15936 20181213_JW_Orientia_Karp_1_3 111.83 57.047 0 0 0 0 0 0 0 0 0 6210 1795;1814 5387 38033 24396 24396 1441 1 MDEQEALNSIMNDLVALQMNR Acetyl (Protein N-term);Deamidation (NQ) 2477.1236 0.12364525 1037 J3KTC4;T2DPK8;T2DQ69;Q1PBM3;J3KRN4;J3QRB6;Q99759;Q99759-2 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 yes no 1 1 0 0 By matching By matching By MS/MS By matching 1 1 1 1 53.516 53.942 3 0.037431 19668 20181213_JW_Orientia_Karp_2_3 44.595 9.5048 41720000 0 0 0 8030900 1698700 31661000 329210 0 6211 1037 5388 38034;38035;38036;38037 24397 24397 383;384;1779 0 MDEQEALNSIMNDLVALQMNRR Oxidation (M);Deamidation (NQ) 2607.2091 0.20910621 1037 J3KTC4;T2DPK8;T2DQ69;Q1PBM3;J3KRN4;J3QRB6;Q99759;Q99759-2 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 yes no 0 1 1 1 By MS/MS By matching 1 1 78.336 78.361 3 0.042139 36969 20181213_JW_Orientia_Karp_1_1 44.054 13.864 755660000 572470000 183190000 0 0 0 0 0 0 6212 1037 5389 38038;38039 24398 24398 383;384;1779 567 1 MDEQEALNSIMNDLVALQMNRR Oxidation (M);2 Deamidation (NQ) 2608.1931 0.1931218 1037 J3KTC4;T2DPK8;T2DQ69;Q1PBM3;J3KRN4;J3QRB6;Q99759;Q99759-2 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 yes no 0 2 1 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 77.245 77.244 3 0.021214 36495 20181213_JW_Orientia_Karp_1_1 51.971 18.054 101530000 22166000 16808000 10564000 9511600 15703000 0 26775000 0 6213 1037 5389 38040;38041;38042;38043;38044;38045 24399;24400 24399 383;384;1779 567 0 MDERREEQIVQLLNSVQAK Acetyl (Protein N-term);Oxidation (M) 2343.1853 0.18525795 731 E7EWK3;B7Z8P5 DHX36 yes no 1 0 1 2 By MS/MS By matching 1 1 74.695 74.774 2 0.017361 34741 20181213_JW_Orientia_Karp_1_2 69.352 19.364 12919000 0 10454000 0 0 0 0 0 2464200 6214 731 5390 38046;38047 24401 24401 433 1 MDETVAEFIK Acetyl (Protein N-term);Oxidation (M) 1239.5693 0.56930492 837 H3BMD5;H3BMC7;D3DUK9;Q96H22-2;Q96H22-5;Q96H22-4;Q96H22;Q96H22-3 CENPN;C16orf60 Centromere protein N yes no 1 0 1 0 By matching By MS/MS By matching 1 1 1 19.197 19.43 2 0.02801 3523 20181213_JW_Orientia_Karp_1_3 69.628 28.641 4245800 0 1836400 1604000 0 0 805430 0 0 6215 837 5391 38048;38049;38050 24402 24402 479 1 MDEVIFEEFK Oxidation (M) 1301.585 0.58495498 1333 Karp_01373 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.686 60.973 2 1.1834E-06 25586 20181213_JW_Orientia_Karp_1_3 183.43 73.296 85184000 18401000 18842000 11442000 2405100 13068000 12538000 0 8487800 6216 1333 5392 38051;38052;38053;38054;38055;38056;38057 24403;24404;24405;24406;24407;24408;24409 24405 890 7 MDEVIFEEFK Unmodified 1285.59 0.59004036 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 64.59 64.715 2 4.7047E-18 28556 20181213_JW_Orientia_Karp_1_1 237.92 94.891 46302000 15511000 14625000 9718000 0 0 6448100 0 0 6217 1333 5392 38058;38059;38060;38061;38062;38063;38064 24410;24411;24412;24413;24414;24415;24416;24417 24410 8 MDFFRVVENQRR Acetyl (Protein N-term);2 Deamidation (NQ) 1639.7777 0.77767498 2064 T2B5D4 yes yes 1 2 0 2 By MS/MS By matching By matching 1 1 1 38.161 38.665 2 0.033921 12226 20181213_JW_Orientia_Karp_1_2 63.184 20.836 5841800 0 3830800 0 0 0 0 1615500 395460 6218 2064 5393 38065;38066;38067 24418 24418 2128 1 MDGIVPDIAVGTK Acetyl (Protein N-term);Oxidation (M) 1372.6908 0.69081704 1633 P26599;P26599-2;P26599-3;A6NLN1;K7ELW5;K7EKJ7 PTBP1 Polypyrimidine tract-binding protein 1 yes no 1 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 70.964 71.077 2 0.016616 25777 20181213_JW_Orientia_Karp_3_1 80.69 51.994 44023000 8608600 18171000 0 0 3143400 0 14099000 0 6219 1633 5394 38068;38069;38070;38071 24419 24419 1259 1 MDGTYACSYTPVK Unmodified 1491.6374 0.63740126 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 43.246 43.421 2 0.00045797 15260 20181213_JW_Orientia_Karp_1_1 154.66 95.307 19089000 8637200 10452000 0 0 0 0 0 0 6220 1520 5395 38072;38073;38074 24420;24421;24422;24423 24421 4 MDGTYACSYTPVK Oxidation (M) 1507.6323 0.63231588 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 39.982 40.324 2 0.00080607 12590 20181213_JW_Orientia_Karp_3_1 141.71 105.39 27687000 7655100 4733200 6863600 0 0 0 7088700 1346700 6221 1520 5395 38075;38076;38077;38078;38079 24424;24425;24426 24425 1131 3 MDIDAPDVDVHGPDWHLK Oxidation (M) 2074.9418 0.94183978 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 51.963 52.213 4 0.018923 18972 20181213_JW_Orientia_Karp_2_3 67.646 38.028 59913000 13615000 11105000 2913100 13620000 3703800 14956000 0 0 6222 1782 5396 38080;38081;38082;38083;38084;38085 24427 24427 1418 1 MDIDAPDVEVQGPDWHLK Unmodified 2063.9622 0.96224087 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 61.425 61.712 3 0.00033283 26141 20181213_JW_Orientia_Karp_1_3 144.08 108.37 131460000 36692000 27780000 34007000 0 15599000 10352000 1224400 5810600 6223 1782 5397 38086;38087;38088;38089;38090;38091;38092 24428;24429;24430;24431;24432;24433;24434;24435 24432 8 MDIDVPDVEVQGPDWHLK Oxidation (M) 2107.9885 0.98845562 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 62.229 62.451 3 0.0010872 27109 20181213_JW_Orientia_Karp_1_1 112.91 64.203 51528000 22469000 0 4833300 0 9296100 5876600 0 9053300 6224 1782 5398 38093;38094;38095;38096;38097 24436;24437;24438;24439 24436 1419 3 MDINVNSTGVNSK Oxidation (M) 1393.6507 0.65074314 2048 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 50.914 51.278 2 0.0021991 18160 20181213_JW_Orientia_Karp_2_1 119.53 16.907 53151000 0 0 13348000 19541000 7263900 9419100 3578800 0 + 6225 2048 5399 38098;38099;38100;38101;38102;38103;38104 24440;24441 24441 1561 2 MDLADLLTQNPELFR Oxidation (M) 1790.8873 0.88728501 1497 O14933-2;O14933 UBE2L6 Ubiquitin/ISG15-conjugating enzyme E2 L6 yes no 0 0 1 0 By MS/MS 1 74.291 74.289 2 0.023598 34193 20181213_JW_Orientia_Karp_1_3 100.02 53.316 0 0 0 0 0 0 0 0 0 6226 1497 5400 38105 24442 24442 1101 1 MDLCNDYLR Unmodified 1198.5111 0.51107853 1126 Karp_00329 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 50.513 50.821 2 0.035929 17226 20181213_JW_Orientia_Karp_3_1 74.376 35.072 39057000 10916000 7954700 7460600 5220200 1845400 3203200 2457500 0 6227 1126 5401 38106;38107;38108;38109;38110;38111;38112 24443 24443 1 MDLQMMSQK 2 Oxidation (M);Deamidation (NQ) 1143.461 0.4610168 1464 L8E6W5 ATRX yes yes 0 1 2 0 By MS/MS 1 33.324 33.575 3 0.042195 8533 20181213_JW_Orientia_Karp_2_2 40.724 8.4037 0 0 0 0 0 0 0 0 0 6228 1464 5402 38113 24444 24444 1882 1 MDLVTYFGK Unmodified 1072.5263 0.52631789 53 B4DFN6;B4DI06;A0A024R1T5;P09543-2;P09543 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 61.33 61.58 2 0.0016706 26021 20181213_JW_Orientia_Karp_1_3 122.19 77.74 18056000 9288800 3475900 4612300 678530 0 0 0 0 6229 53 5403 38114;38115;38116;38117 24445;24446 24446 2 MDLYSTPAAALDR Acetyl (Protein N-term) 1464.6919 0.69187967 227 A8KA84;A0A024RBQ5;Q9Y6K5;F8VWK9;F8VS35 OAS3 2'-5'-oligoadenylate synthase 3 yes no 1 0 0 0 By MS/MS 1 74.126 74.126 2 0.040584 34392 20181213_JW_Orientia_Karp_1_1 78.342 39.467 0 0 0 0 0 0 0 0 0 6230 227 5404 38118 24447 24447 1 MDMIDQVK 2 Oxidation (M) 1010.4413 0.44126763 1175 Karp_00629 yes yes 0 0 2 0 By MS/MS By matching By matching By matching 1 1 1 1 27.602 27.902 2 0.022364 7422 20181213_JW_Orientia_Karp_1_1 80.219 37.931 11466000 3541900 3163900 2381000 0 0 0 2379500 0 6231 1175 5405 38119;38120;38121;38122 24448 24448 735;736 1 MDMIDQVK Oxidation (M) 994.44635 0.44635301 1175 Karp_00629 yes yes 0 0 1 0 By MS/MS By matching By matching 1 1 1 37.876 38.275 2 0.025476 12003 20181213_JW_Orientia_Karp_1_2 82.279 32.92 9992500 0 4661500 4730400 0 0 0 600640 0 6232 1175 5405 38123;38124;38125 24449 24449 735;736 1 MDMSLDDIIK 2 Oxidation (M) 1211.5414 0.54137561 886 E9PB61;Q86V81 ALYREF THO complex subunit 4 yes no 0 0 2 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.859 53.254 2 0.0070499 20940 20181213_JW_Orientia_Karp_1_2 91.867 61.612 49576000 0 13987000 8045100 10243000 5772900 9221600 2048100 258750 6233 886 5406 38126;38127;38128;38129;38130;38131;38132;38133 24450;24451;24452 24451 506;507 3 MDMSLDDIIK Oxidation (M) 1195.5465 0.54646099 886 E9PB61;Q86V81 ALYREF THO complex subunit 4 yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 1 59.399 59.684 2 0.0014954 23114 20181213_JW_Orientia_Karp_1_3 116.37 58.412 23858000 10843000 3047400 6552800 1927500 1487300 0 0 0 6234 886 5406 38134;38135;38136;38137;38138;38139;38140 24453;24454 24453 506;507 2 MDNQAERESEAGVGLQR Acetyl (Protein N-term);3 Deamidation (NQ) 1933.8323 0.83234891 530 B3KTP4;Q9BWW8 ApoL6;APOL6 Apolipoprotein L6 yes no 1 3 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 46.246 46.566 2 0.019801 15517 20181213_JW_Orientia_Karp_2_2 60.448 28.23 312790000 88693000 61714000 71690000 32467000 15311000 16181000 8740500 17989000 6235 530 5407 38141;38142;38143;38144;38145;38146;38147;38148 24455;24456;24457;24458;24459;24460;24461 24458 194;1502;1503 7 MDNYADLSDTELTTLLR Acetyl (Protein N-term);Oxidation (M) 2027.9358 0.93575135 1691 Q5HY57;P50402;F8WEQ1 EMD Emerin yes no 1 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 76.693 76.683 2 2.5243E-05 35778 20181213_JW_Orientia_Karp_1_3 147.07 85.723 24926000 4698300 4436800 7790400 0 1630900 0 6369400 0 6236 1691 5408 38149;38150;38151;38152;38153 24462;24463;24464 24463 1305 3 MDNYADLSDTELTTLLR Acetyl (Protein N-term) 2011.9408 0.94083673 1691 Q5HY57;P50402;F8WEQ1 EMD Emerin yes no 1 0 0 0 By matching By MS/MS By matching 1 1 1 78.169 78.185 2 0.0015965 37115 20181213_JW_Orientia_Karp_1_2 137.46 96.404 12358000 3755700 4539000 4063200 0 0 0 0 0 6237 1691 5408 38154;38155;38156 24465 24465 1 MDPNTIIEALR Acetyl (Protein N-term);Oxidation (M) 1329.6599 0.65985126 904 E9PLJ0;O95373 IPO7 Importin-7 yes no 1 0 1 0 By MS/MS 1 32.519 33.17 3 0.016306 9076 20181213_JW_Orientia_Karp_3_1 71.349 21.242 312750 0 0 0 0 0 0 312750 0 6238 904 5409 38157 24466 24466 517 0 MDPQSRSLKNAGSR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1604.7577 0.75766782 1506 O43247-2 yes yes 1 1 1 2 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 59.438 59.731 2 0.036329 22627 20181213_JW_Orientia_Karp_2_2 57.174 6.9794 171090000 36105000 26101000 32594000 17324000 23416000 15587000 19965000 0 6239 1506 5410 38158;38159;38160;38161;38162;38163;38164 24467 24467 1905 1 MDPQVKWLQQQEVK Acetyl (Protein N-term);Deamidation (NQ) 1798.8924 0.89237039 240 H0YKZ4;A2RQD9;H0Y3Q0;Q59H04;A0A024RCE2;A0A024RCD0;P29122-3;P29122-5;P29122-4;P29122-2;P29122-8;P29122;P29122-7 PCSK6 Proprotein convertase subtilisin/kexin type 6 yes no 1 1 0 1 By matching By MS/MS By matching 1 1 1 52.602 53.052 2 0.03992 19280 20181213_JW_Orientia_Karp_2_2 60.167 17.449 24585000 0 0 0 7251700 10657000 0 6676200 0 6240 240 5411 38165;38166;38167 24468 24468 1340 0 MDQTTGEPQCEVARR Acetyl (Protein N-term);Deamidation (NQ) 1819.7829 0.7828963 429 B0QYH3;B7Z820 CCDC117 yes no 1 1 0 1 By MS/MS 1 45.107 45.107 2 0.029124 16137 20181213_JW_Orientia_Karp_1_1 61.48 14.637 0 0 0 0 0 0 0 0 0 6241 429 5412 38168 24469 24469 1447 1 MDSAGQDINLNSPNK Acetyl (Protein N-term);Oxidation (M) 1660.7363 0.73626368 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q53GA0;Q68E05;O43399-2;O43399-4;O43399-3;Q5J908 TPD52L2;DKFZp686A1765 Tumor protein D54 yes no 1 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 48.317 48.675 2 9.0901E-38 16750 20181213_JW_Orientia_Karp_2_1 250.81 189.38 30548000 5758700 7534600 4584500 5759900 3861900 0 266700 2781500 6242 1507 5413 38169;38170;38171;38172;38173;38174;38175;38176 24470;24471;24472;24473;24474;24475;24476 24473 1111 6 MDSAGQDINLNSPNK Acetyl (Protein N-term) 1644.7413 0.74134906 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q53GA0;Q68E05;O43399-2;O43399-4;O43399-3;Q5J908 TPD52L2;DKFZp686A1765 Tumor protein D54 yes no 1 0 0 0 By MS/MS By MS/MS 1 1 56.518 56.693 2 0.012551 23209 20181213_JW_Orientia_Karp_1_2 95.264 56.862 11597000 7149400 4447600 0 0 0 0 0 0 6243 1507 5413 38177;38178 24477;24478 24478 0 MDSTLTASEIR Acetyl (Protein N-term);Oxidation (M) 1280.5918 0.59183127 628 P49588;B4DR45 AARS Alanine--tRNA ligase, cytoplasmic yes no 1 0 1 0 By MS/MS By matching 1 1 51.862 52.037 2 0.033881 20532 20181213_JW_Orientia_Karp_1_1 66.92 18.829 11799000 8050000 3748600 0 0 0 0 0 0 6244 628 5414 38179;38180 24479 24479 1 MDTLKQRSTLVR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1505.7872 0.78717704 720 B7Z4T1 yes yes 1 1 1 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 73.233 73.276 2 0.026825 29905 20181213_JW_Orientia_Karp_2_3 65.347 18.16 174080000 37449000 0 24077000 0 26621000 21977000 47477000 16476000 6245 720 5415 38181;38182;38183;38184;38185;38186 24480 24480 1607 428 0 MDTTMLNMRNLFEQLVR Acetyl (Protein N-term);Deamidation (NQ) 2154.0272 0.027166088 1968 Q9BZ74 FKSG42 yes yes 1 1 0 1 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 38.765 39.095 3 0.021768 12895 20181213_JW_Orientia_Karp_1_1 58.817 33.377 212000000 24758000 0 38180000 77307000 0 34521000 37232000 0 6246 1968 5416 38187;38188;38189;38190;38191 24481;24482 24481 1216 2 MDVNIAPLR Acetyl (Protein N-term);Oxidation (M) 1085.5539 0.55392962 76 F8WF90;C9JQU6;F8WF33;B4DWQ6;B4DZZ0;B3KQB4;A0A024R371;O75915 ARL6IP5 PRA1 family protein 3 yes no 1 0 1 0 By MS/MS By MS/MS 1 1 61.294 61.568 2 0.0072201 26351 20181213_JW_Orientia_Karp_1_2 101.25 53.678 0 0 0 0 0 0 0 0 0 6247 76 5417 38192;38193 24483;24484 24483 80 2 MDVNVGDIDIEGPEGK Unmodified 1686.7771 0.77706586 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 61.132 61.378 2 6.316E-09 26315 20181213_JW_Orientia_Karp_1_2 183.06 129.47 67683000 28515000 24682000 3606100 4791300 0 6088100 0 0 6248 1782 5418 38194;38195;38196;38197;38198 24485;24486;24487;24488;24489 24488 5 MDVNVGDIDIEGPEGK Oxidation (M) 1702.772 0.77198048 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 55.969 56.327 2 0.013365 21098 20181213_JW_Orientia_Karp_2_1 87.447 49.847 89740000 10954000 11679000 22295000 16950000 11646000 12256000 3288400 671020 6249 1782 5418 38199;38200;38201;38202;38203;38204;38205;38206 24490 24490 1420 1 MEAENSTLWFIIAGNPKKK Oxidation (M);2 Deamidation (NQ) 2194.098 0.09800607 1470 L8EB19 C15orf17 yes yes 0 2 1 2 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 70.691 70.798 2 0.01942 28681 20181213_JW_Orientia_Karp_2_1 64.224 29.17 89330000 16420000 22409000 17346000 3576500 6297400 4794200 18487000 0 6250 1470 5419 38207;38208;38209;38210;38211;38212;38213 24491 24491 996;997 1093 0 MEATLEQHLEDTMK Acetyl (Protein N-term);Oxidation (M) 1732.7648 0.76478662 1508 O43504 LAMTOR5 Ragulator complex protein LAMTOR5 yes yes 1 0 1 0 By MS/MS By matching By matching 1 1 1 57.696 58.016 2 0.021679 24419 20181213_JW_Orientia_Karp_1_1 73.273 38.5 11007000 3776300 5849100 0 0 0 0 0 1381100 6251 1508 5420 38214;38215;38216 24492;24493 24492 1112;1113 2 MEATLEQHLEDTMK Acetyl (Protein N-term);2 Oxidation (M) 1748.7597 0.75970124 1508 O43504 LAMTOR5 Ragulator complex protein LAMTOR5 yes yes 1 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 48.025 48.324 2 0.0043557 16453 20181213_JW_Orientia_Karp_2_2 92.781 52.054 14056000 0 0 5089400 4573100 4393200 0 0 0 6252 1508 5420 38217;38218;38219;38220 24494;24495;24496;24497 24496 1112;1113 4 MEAVLNELVSVEDLLK Acetyl (Protein N-term);Oxidation (M) 1858.9598 0.95978125 2010 Q9Y3D6 FIS1 Mitochondrial fission 1 protein yes yes 1 0 1 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 80.912 80.831 2 0.0078169 37858 20181213_JW_Orientia_Karp_1_1 90.707 44.792 10008000 3324100 804540 0 682600 3288800 0 1907600 0 6253 2010 5421 38221;38222;38223;38224;38225 24498;24499 24498 1534 1 MECYLKLLLQEQAR Oxidation (M);2 Deamidation (NQ) 1811.8798 0.87975679 1036 J3KRL8 PLEKHM1 yes yes 0 2 1 1 By MS/MS 1 46.99 47.539 2 0.022116 16154 20181213_JW_Orientia_Karp_2_1 73.887 19.103 0 0 0 0 0 0 0 0 0 6254 1036 5422 38226 24500 24500 1777;1778 566 1 MEDPTLYIVER Acetyl (Protein N-term);Oxidation (M) 1422.6701 0.67008159 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5;Q6NZI2-2 PTRF Polymerase I and transcript release factor yes no 1 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.795 69.912 2 2.408E-09 25130 20181213_JW_Orientia_Karp_3_1 197.79 145.21 67859000 13518000 5123100 14593000 0 9529200 6085800 19010000 0 6255 1868 5423 38227;38228;38229;38230;38231;38232;38233 24501;24502;24503;24504;24505;24506;24507;24508;24509 24508 1478 9 MEDPTLYIVER Acetyl (Protein N-term) 1406.6752 0.67516697 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5;Q6NZI2-2 PTRF Polymerase I and transcript release factor yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 74.842 74.841 2 0.00018876 34885 20181213_JW_Orientia_Karp_1_2 155.11 97.966 45011000 18142000 4933300 19309000 0 0 2626800 0 0 6256 1868 5423 38234;38235;38236;38237 24510;24511;24512;24513 24511 4 MEDSVGCLETAEEVK Unmodified 1695.7332 0.73315214 47 A0A024R1N1;P35579 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 48.071 48.355 2 0.0006655 18035 20181213_JW_Orientia_Karp_1_1 137.95 79.318 7033700 3619500 0 3203600 0 0 0 210570 0 6257 47 5424 38238;38239;38240 24514 24514 1 MEDVFVHATAVVAAGVADLK Unmodified 2042.0507 0.050661947 1096 Karp_00250 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 70.47 70.61 3 6.6782E-08 31700 20181213_JW_Orientia_Karp_1_3 156.13 110.26 184830000 0 34274000 28956000 0 47566000 19205000 54829000 0 6258 1096 5425 38241;38242;38243;38244;38245 24515;24516;24517;24518;24519;24520 24517 6 MEDVFVHATAVVAAGVADLK Oxidation (M) 2058.0456 0.045576569 1096 Karp_00250 yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 67.383 67.618 3 5.0804E-22 26242 20181213_JW_Orientia_Karp_3_2 204.78 155.63 140380000 0 19239000 13629000 0 40653000 20059000 8223700 38575000 6259 1096 5425 38246;38247;38248;38249;38250;38251 24521;24522;24523 24523 617 3 MEEALQVAINNNR 4 Deamidation (NQ) 1504.6715 0.67153816 536 B3KUG6;Q8IVU3-2;Q8IVU3 HERC6 Probable E3 ubiquitin-protein ligase HERC6 yes no 0 4 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 69.906 70.049 2 0.041494 28396 20181213_JW_Orientia_Karp_2_3 58.63 10.028 49635000 9718800 0 7204100 0 9020500 6703400 15404000 1584600 6260 536 5426 38252;38253;38254;38255;38256;38257 24524 24524 1505 1 MEEESGAPGVPSGNGAPGPK Deamidation (NQ) 1867.8258 0.82580697 1701 P52272-2;P52272;M0R019;B4DEG4;M0R0N3;M0R2T0;M0R0Y6;M0QYQ7 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 1 0 0 By MS/MS 1 40.986 40.986 2 0.031801 13913 20181213_JW_Orientia_Karp_1_1 78.069 45.571 4707200 4707200 0 0 0 0 0 0 0 6261 1701 5427 38258 24525 24525 1126 1 MEEIGILVEK Acetyl (Protein N-term);Oxidation (M) 1217.6213 0.62134049 342 A8K2M0;P43686-2;P43686 PSMC4 26S protease regulatory subunit 6B yes no 1 0 1 0 By MS/MS By MS/MS 1 1 69.069 69.144 2 0.00067463 31225 20181213_JW_Orientia_Karp_1_1 121.5 76.639 8072200 5679300 2392900 0 0 0 0 0 0 6262 342 5428 38259;38260 24526;24527 24526 230 2 MEELHNQEMQK 2 Oxidation (M) 1447.6072 0.60716376 1622 Q9BSV4;Q86VG2;P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 2 0 By MS/MS 1 16.687 16.936 3 0.036133 2641 20181213_JW_Orientia_Karp_2_1 48.981 28.193 0 0 0 0 0 0 0 0 0 6263 1622 5429 38261 24528 24528 1247;1248 1 MEFNNTTQEDVQER Acetyl (Protein N-term);2 Deamidation (NQ) 1783.7207 0.72067319 917 F1T0J2 GOLGB1 Golgin subfamily B member 1 yes yes 1 2 0 0 By MS/MS By matching 1 1 57.013 57.238 2 0.036171 23290 20181213_JW_Orientia_Karp_1_3 53.013 8.4702 9876900 0 0 5143800 0 4733100 0 0 0 6264 917 5430 38262;38263 24529 24529 1714 1 MEGGGAEVHAQLPSLEGDLR Unmodified 2064.9899 0.9898526 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 52.284 52.629 3 0.005013 20325 20181213_JW_Orientia_Karp_1_3 138.97 100.28 117360000 5718700 33346000 45568000 9956900 9076500 9953100 954360 2787800 6265 1782 5431 38264;38265;38266;38267;38268;38269;38270;38271 24530;24531;24532;24533;24534;24535 24532 6 MEGGGAEVHAQLPSLEGDLR Oxidation (M) 2080.9848 0.98476723 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.676 51.021 3 0.00021725 18003 20181213_JW_Orientia_Karp_2_1 118.66 82.828 218090000 50102000 55256000 28454000 23595000 11693000 19641000 23035000 6318200 6266 1782 5431 38272;38273;38274;38275;38276;38277;38278;38279 24536;24537;24538;24539;24540;24541 24537 1421 6 MEGLLSVALQGAELEGNWK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 2103.0194 0.019421398 1482 M0QYX0;Q9Y2P0 ZNF835 Zinc finger protein 835 yes no 1 1 1 0 By MS/MS 1 67.338 67.586 2 0.038891 27059 20181213_JW_Orientia_Karp_2_1 48.704 9.3096 0 0 0 0 0 0 0 0 0 6267 1482 5432 38280 24542 24542 1899 1 MEGYSEEASLLR Acetyl (Protein N-term) 1425.6446 0.64459513 329 A7MD96;Q8N3V7-3;Q8N3V7-2 SYNPO Synaptopodin yes no 1 0 0 0 By MS/MS 1 69.425 69.425 2 0.0078857 31384 20181213_JW_Orientia_Karp_1_1 112.13 68.525 0 0 0 0 0 0 0 0 0 6268 329 5433 38281 24543 24543 1 MEHQQQEQFK Oxidation (M) 1347.5877 0.58774895 1310 Karp_01252 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 3 16.093 16.368 2;3 3.9776E-07 2750 20181213_JW_Orientia_Karp_1_3 191.45 102.63 66926000 30096000 6896600 18090000 7616600 0 2856800 1370500 0 6269 1310 5434 38282;38283;38284;38285;38286;38287;38288;38289;38290;38291;38292;38293 24544;24545;24546;24547;24548;24549;24550 24547 862 7 MEHQQQEQFK Unmodified 1331.5928 0.59283433 1310 Karp_01252 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 19.352 19.581 2 0.010964 3603 20181213_JW_Orientia_Karp_1_3 91.584 38.257 4010500 2315000 0 887150 280810 0 234030 293560 0 6270 1310 5434 38294;38295;38296;38297;38298 24551 24551 1 MEIFVGK Oxidation (M) 838.42588 0.42587556 1399 Karp_02188 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 37.878 38.199 2 0.014707 12539 20181213_JW_Orientia_Karp_1_1 106.42 17.772 621080000 248850000 157020000 207970000 1521000 3617800 708870 1386600 0 6271 1399 5435 38299;38300;38301;38302;38303;38304;38305 24552;24553 24552 1007 2 MEIFVGK Unmodified 822.43096 0.43096094 1399 Karp_02188 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 46.844 47.164 2 0.023741 15772 20181213_JW_Orientia_Karp_2_2 97.602 37.244 1552300000 604150000 462860000 253120000 118940000 56041000 48819000 462900 7870800 6272 1399 5435 38306;38307;38308;38309;38310;38311;38312;38313 24554 24554 1 MEIIPLNQHTSDPNNR Acetyl (Protein N-term);2 Deamidation (NQ) 1921.884 0.88399055 1983 Q9NQX0-2;Q9NQX0-1;Q9NQX0 PRDM6 Putative histone-lysine N-methyltransferase PRDM6 yes no 1 2 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.257 52.616 2 0.00034766 19190 20181213_JW_Orientia_Karp_2_3 126.03 46.956 36495000 0 8097400 8914500 5435000 5010700 4768900 4268400 0 6273 1983 5436 38314;38315;38316;38317;38318;38319;38320 24555;24556;24557;24558 24558 1224;1225;2093 4 MEIIPLNQHTSDPNNR Acetyl (Protein N-term);Deamidation (NQ) 1920.9 0.89997496 1983 Q9NQX0-2;Q9NQX0-1;Q9NQX0 PRDM6 Putative histone-lysine N-methyltransferase PRDM6 yes no 1 1 0 0 By MS/MS 1 51.389 51.54 2 0.042712 18373 20181213_JW_Orientia_Karp_2_2 56.551 11.987 0 0 0 0 0 0 0 0 0 6274 1983 5436 38321 24559 24559 1224;1225;2093 1 MEIIQIPGYVEGEK Oxidation (M) 1620.8069 0.80690943 1190 Karp_00705 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.023 60.29 2 3.3404E-05 25523 20181213_JW_Orientia_Karp_1_2 164.81 89.072 91776000 17860000 34328000 16650000 0 9285100 6639400 7013600 0 6275 1190 5437 38322;38323;38324;38325;38326;38327 24560;24561;24562;24563;24564;24565;24566 24562 754 7 MEIIQIPGYVEGEK Unmodified 1604.812 0.81199481 1190 Karp_00705 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 65.011 65.127 2 0.03129 28855 20181213_JW_Orientia_Karp_1_1 92.792 30.834 91828000 45141000 20096000 26592000 0 0 0 0 0 6276 1190 5437 38328;38329;38330 24567 24567 1 MEKIEEQFANLHIVK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1887.9288 0.92881548 129 G3V4B8;A0A024R667;Q96FK6 WDR89;C14orf150 WD repeat-containing protein 89 yes no 1 2 1 1 By MS/MS 1 40.178 40.329 3 0.032854 12023 20181213_JW_Orientia_Karp_2_2 52.821 21.045 0 0 0 0 0 0 0 0 0 6277 129 5438 38331 24568 24568 52;1299 1 MEKIEEQFANLHIVK Acetyl (Protein N-term);Deamidation (NQ) 1870.9499 0.94988527 129 G3V4B8;A0A024R667;Q96FK6 WDR89;C14orf150 WD repeat-containing protein 89 yes no 1 1 0 1 By MS/MS 1 42.125 42.376 3 0.0054278 13677 20181213_JW_Orientia_Karp_2_3 96.464 34.177 0 0 0 0 0 0 0 0 0 6278 129 5438 38332 24569 24569 52;1299 1 MELITILEK Acetyl (Protein N-term);Oxidation (M) 1146.6206 0.62061221 490 B2RBR9;Q14974;J3QR48 KPNB1 Importin subunit beta-1 yes no 1 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 76.174 76.174 2 0.00048318 35789 20181213_JW_Orientia_Karp_1_2 135.71 73.247 41038000 14144000 11207000 11052000 0 0 0 4635100 0 6279 490 5439 38333;38334;38335;38336 24570;24571;24572;24573 24571 314 4 MELQEIQLK Unmodified 1130.6005 0.60054547 494 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-3;P06753-5;P06753-6;Q5VU61;J3KN67;P06753-4;Q8NAG3;B4DWT5;M1VPF4;P06753;B4DQ80;Q8NAH0;P06753-7;Q5VU62 DKFZp686J1372;TPM3;TPM3-ROS1;HEL-S-82p Tropomyosin alpha-3 chain;Tyrosine-protein kinase receptor yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 51.641 51.896 2 0.00024326 18674 20181213_JW_Orientia_Karp_2_1 177.3 0 220720000 31945000 37748000 19396000 58963000 22932000 49735000 0 0 6280 494 5440 38337;38338;38339;38340;38341;38342;38343;38344;38345;38346;38347;38348 24574;24575;24576;24577;24578;24579 24576 6 MELSAEYLR Acetyl (Protein N-term) 1152.5485 0.5485099 1973 Q9H3K6-2;Q9H3K6 BOLA2 BolA-like protein 2 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 72.05 72.133 2 0.0012599 33066 20181213_JW_Orientia_Karp_1_1 126.41 64.762 21070000 9632400 0 6247700 0 0 0 5189900 0 6281 1973 5441 38349;38350;38351;38352 24580;24581;24582;24583;24584 24580 5 MELSAEYLR Acetyl (Protein N-term);Oxidation (M) 1168.5434 0.54342452 1973 Q9H3K6-2;Q9H3K6 BOLA2 BolA-like protein 2 yes no 1 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 61.017 61.277 2 0.0012626 23544 20181213_JW_Orientia_Karp_2_2 117.89 60.331 42608000 10701000 2975000 8447700 0 10177000 8546100 0 1761800 6282 1973 5441 38353;38354;38355;38356;38357;38358;38359 24585;24586;24587;24588 24586 1522 4 MELSDANLQTLTEYLK Acetyl (Protein N-term);Oxidation (M) 1925.9292 0.92920941 600 B4DM31;P55060-4;P55060-3;P55060;P55060-2 CSE1L Exportin-2 yes no 1 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 76.438 76.428 2 0.00051458 35856 20181213_JW_Orientia_Karp_1_1 129.76 95.761 24963000 6717200 2858000 7472400 0 1727500 0 6188000 0 6283 600 5442 38360;38361;38362;38363;38364 24589 24589 370 1 MELSDANLQTLTEYLK Acetyl (Protein N-term) 1909.9343 0.93429479 600 B4DM31;P55060-4;P55060-3;P55060;P55060-2 CSE1L Exportin-2 yes no 1 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 78.077 78.045 2 0.012362 37142 20181213_JW_Orientia_Karp_1_2 94.717 48.339 31533000 5731400 5319500 0 3976400 0 3250400 12850000 405110 6284 600 5442 38365;38366;38367;38368;38369;38370 24590 24590 0 MELSTDTPIK Oxidation (M) 1149.5587 0.55874023 2058 yes no 0 0 1 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 2 1 1 55.336 55.643 2 0.0045816 20650 20181213_JW_Orientia_Karp_2_1 101.6 29.723 197410000 33923000 23273000 23387000 33158000 34217000 49448000 0 0 + 6285 2058 5443 38371;38372;38373;38374;38375;38376;38377 24591 24591 1563 1 MELVQVLK Acetyl (Protein N-term);Oxidation (M) 1016.5576 0.55761802 1830 Q53HG1;Q9UI09;F8VXI1;F8VRD8;Q9UI09-2 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 1 0 1 0 By MS/MS 1 69.866 69.866 2 0.010679 31657 20181213_JW_Orientia_Karp_1_1 94.302 55.511 0 0 0 0 0 0 0 0 0 6286 1830 5444 38378 24592 24592 1456 1 MENAELDVPIQSVFTR Unmodified 1847.9087 0.90874874 186 A0A024R9Q1;P07996;P07996-2;A0PJG0 THBS1 Thrombospondin-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 68.909 69.058 2 0.0012446 24596 20181213_JW_Orientia_Karp_3_1 124.81 72.316 51673000 13040000 11449000 15639000 1198900 0 0 10346000 0 + 6287 186 5445 38379;38380;38381;38382;38383 24593;24594;24595 24595 3 MENSERAEEMQENYQR Acetyl (Protein N-term);2 Deamidation (NQ) 2086.8208 0.82079794 297 A4D132;Q2M3G0 LOC402251;ABCB5 ATP-binding cassette sub-family B member 5 yes no 1 2 0 1 By MS/MS 1 40.359 40.61 2 0.026765 12761 20181213_JW_Orientia_Karp_2_3 62.633 18.021 0 0 0 0 0 0 0 0 0 6288 297 5446 38384 24596 24596 115;1362 1 MEPGPDGPAASGPAAIR Acetyl (Protein N-term);Oxidation (M) 1650.7672 0.76716988 1609 P19623;K7EKM4 SRM Spermidine synthase yes no 1 0 1 0 By matching By MS/MS By matching 1 1 1 52.093 52.564 2 0.01042 18429 20181213_JW_Orientia_Karp_3_1 85.536 46.956 23140000 0 0 0 0 13346000 0 9264600 529020 6289 1609 5447 38385;38386;38387 24597 24597 1231 1 MESYDVIANQPVVIDNGSGVIK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 2406.1625 0.16245682 601 R4GMT0;B4DM97;P61163 ACTR1A Alpha-centractin yes no 1 1 1 0 By MS/MS 1 74.701 74.699 2 0.019941 34420 20181213_JW_Orientia_Karp_1_3 60.549 34.401 0 0 0 0 0 0 0 0 0 6290 601 5448 38388 24598 24598 212 371 1 MESYHKPDQQK Acetyl (Protein N-term);Oxidation (M) 1447.6402 0.64017845 527 B3KSI4;V9HWD9;Q53EM5;P29401;P29401-2;E9PFF2;F8WAX4;F8W888 HEL107;TKT Transketolase yes no 1 0 1 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 19.529 19.769 3 0.039448 3717 20181213_JW_Orientia_Karp_1_2 49.466 21.413 16622000 3748700 4305100 0 3012500 1892100 3663400 0 0 6291 527 5449 38389;38390;38391;38392;38393 24599 24599 1 METEQPEETFPNTETNGEFGK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 2473.0115 0.011495066 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2;B4DFF1;S4R457 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 1 1 1 0 By MS/MS By matching 1 1 63.731 63.905 2 0.017589 27719 20181213_JW_Orientia_Karp_1_2 56.599 43.481 8406900 0 3554500 4852400 0 0 0 0 0 6292 63 5450 38394;38395 24600 24600 28 67 0 METILEQQR Acetyl (Protein N-term) 1188.5809 0.58087266 368 B4DW90;Q53HM6;B3KY12;A8K7V1;A8K566;Q12874 SF3A3 Splicing factor 3A subunit 3 yes no 1 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 67.204 67.418 2 0.00072645 29644 20181213_JW_Orientia_Karp_1_3 142.92 57.711 9570400 2436200 1530500 4389200 0 0 0 0 1214600 6293 368 5451 38396;38397;38398;38399 24601;24602 24602 2 METSALKQQEQPAATK Oxidation (M);2 Deamidation (NQ) 1777.8404 0.8403944 353 Q6LES9;A8K3S0;P40937 RFC5 Replication factor C subunit 5 yes no 0 2 1 1 By MS/MS 1 55.891 55.891 2 0.031259 23050 20181213_JW_Orientia_Karp_1_1 67.879 18.414 0 0 0 0 0 0 0 0 0 6294 353 5452 38400 24603 24603 1406;1407 1 MEVKPPPGCPQPDSGSRR Acetyl (Protein N-term);Deamidation (NQ) 2036.9408 0.94079392 1858 Q65ZQ3 D10S102 yes yes 1 1 0 2 By MS/MS 1 43.876 44.074 2 0.02533 14953 20181213_JW_Orientia_Karp_1_3 66.989 17.566 0 0 0 0 0 0 0 0 0 6295 1858 5453 38401 24604 24604 2011 1 MEVKPPPGRPQPDSGR Acetyl (Protein N-term);Oxidation (M) 1804.889 0.88901635 1700 P51991;B4E036 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 1 0 1 2 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 30.631 31.003 3 0.028485 8737 20181213_JW_Orientia_Karp_1_1 53.395 34.817 175640000 53329000 56868000 0 2785600 0 60022000 0 2633400 6296 1700 5454 38402;38403;38404;38405;38406 24605 24605 0 MEVLESGEQGVLQWDRK Acetyl (Protein N-term);Deamidation (NQ) 2045.9728 0.97280556 1884 Q70T18;Q70T19;Q68D60;A2RRN1;A8KAI3;Q86WD1;Q70SY1-3;Q70SY1-2;Q70SY1 DKFZp686N2325;CREB3L2 Cyclic AMP-responsive element-binding protein 3-like protein 2;Processed cyclic AMP-responsive element-binding protein 3-like protein 2 yes no 1 1 0 1 By matching By matching By MS/MS By matching 1 1 1 1 44.374 44.549 2 0.018149 15232 20181213_JW_Orientia_Karp_1_3 68.44 16.599 23984000 9761400 6670200 6226200 0 1325900 0 0 0 6297 1884 5455 38407;38408;38409;38410 24606 24606 2026;2027 1 MEVMEGPLNLAHQQSR Acetyl (Protein N-term);2 Oxidation (M);Deamidation (NQ) 1913.8611 0.86114662 1936 Q96F24-2;Q96F24 NRBF2 Nuclear receptor-binding factor 2 yes no 1 1 2 0 By matching By MS/MS By matching 1 1 1 51.887 52.07 2 0.016243 20119 20181213_JW_Orientia_Karp_1_2 117.25 44.962 37146000 10679000 12764000 13703000 0 0 0 0 0 6298 1936 5456 38411;38412;38413 24607 24607 1204 1506;1507 1 MEYGFDYILPSPFDPR Oxidation (M) 1961.887 0.88695066 1336 Karp_01409 yes yes 0 0 1 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 74.576 74.62 2 0.010713 27781 20181213_JW_Orientia_Karp_3_1 91.202 46.563 65213000 26293000 11716000 17245000 389130 2446600 0 3554800 3569400 6299 1336 5457 38414;38415;38416;38417;38418;38419;38420 24608 24608 897 1 MEYTLSILKPDVIK Oxidation (M) 1664.9059 0.90589519 1397 Karp_02170 yes yes 0 0 1 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 58.006 58.268 3 0.0010521 22126 20181213_JW_Orientia_Karp_2_1 131.08 81.933 187010000 108300000 0 24100000 0 20402000 27165000 0 7046100 6300 1397 5458 38421;38422;38423;38424;38425;38426 24609;24610;24611 24610 1000 3 MEYTLSILKPDVIK Unmodified 1648.911 0.91098057 1397 Karp_02170 yes yes 0 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 60.794 61.081 3 0.0073408 23763 20181213_JW_Orientia_Karp_2_1 102.97 41.49 207040000 87939000 25798000 52824000 1226700 8716700 15521000 0 15016000 6301 1397 5458 38427;38428;38429;38430;38431;38432;38433 24612;24613;24614 24613 3 MFFASYR Oxidation (M) 936.41637 0.41637351 1396 Karp_02152 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.241 43.551 2 0.040343 14857 20181213_JW_Orientia_Karp_1_2 78.616 26.928 46859000 12853000 18504000 9079000 0 1948900 0 4299600 175240 6302 1396 5459 38434;38435;38436;38437;38438;38439 24615;24616 24615 2 MFGGPGTASR Oxidation (M) 995.44946 0.44946455 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 1 27.026 27.355 2 0.00015377 6367 20181213_JW_Orientia_Karp_3_1 145.72 76.291 537850000 116150000 199490000 139550000 10488000 7818000 0 46777000 17568000 6303 1571 5460 38440;38441;38442;38443;38444;38445;38446;38447;38448;38449 24617;24618;24619;24620;24621;24622;24623;24624;24625;24626 24625 1195 10 MFGGPGTASR Unmodified 979.45455 0.45454993 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 32.887 33.177 2 1.5422E-05 9476 20181213_JW_Orientia_Karp_1_2 163.15 77.791 498540000 205000000 181590000 92785000 0 0 4164000 14996000 0 6304 1571 5460 38450;38451;38452;38453;38454 24627;24628;24629;24630 24628 4 MFGGPGTASRPSSSR Oxidation (M) 1509.6994 0.69942466 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 1 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 24.225 24.605 3 0.026133 4441 20181213_JW_Orientia_Karp_3_2 89.805 59.412 435680000 0 3092300 6099300 1255100 99058000 57881000 132040000 136260000 6305 1571 5461 38455;38456;38457;38458;38459;38460;38461 24631 24631 1195 1 MFILQSK Oxidation (M) 881.46807 0.46807473 868 E5RGS4;O60925 PFDN1 Prefoldin subunit 1 yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 40.523 40.863 2 0.012585 12319 20181213_JW_Orientia_Karp_2_2 111.65 23.619 89791000 0 0 0 24688000 59973000 4832700 0 297610 6306 868 5462 38462;38463;38464;38465 24632;24633;24634 24633 496 3 MFIQTQQTPNPNSLK Unmodified 1745.8771 0.87705468 1200 Karp_00819 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 1 1 1 1 49.06 49.426 2;3 8.089E-78 18272 20181213_JW_Orientia_Karp_1_2 296.28 232.05 449890000 108720000 154490000 99038000 34749000 18361000 18110000 368950 16052000 6307 1200 5463 38466;38467;38468;38469;38470;38471;38472;38473;38474;38475 24635;24636;24637;24638;24639;24640;24641;24642 24636 7 MFIQTQQTPNPNSLK Deamidation (NQ) 1746.8611 0.86107026 1200 Karp_00819 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 50.079 50.386 2 4.4172E-113 18983 20181213_JW_Orientia_Karp_1_2 317.81 246.59 129200000 30682000 33633000 30671000 10415000 6792400 7611100 9395600 0 6308 1200 5463 38476;38477;38478;38479;38480;38481;38482 24643;24644;24645;24646;24647;24648 24644 614 6 MFIQTQQTPNPNSLK Oxidation (M);Deamidation (NQ) 1762.856 0.85598488 1200 Karp_00819 yes yes 0 1 1 0 By MS/MS By MS/MS 1 1 45.634 46.059 2 1.4205E-09 15285 20181213_JW_Orientia_Karp_3_1 200.76 138.3 0 0 0 0 0 0 0 0 0 6309 1200 5463 38483;38484 24649;24650 24650 614 765 2 MFLSFPTTK Oxidation (M) 1086.542 0.54196796 789;825 CON__P01966;Q96T46;G3V1N2;U6A216;Q9BX83;E9M4D4;I1VZV6;D1MGQ2;P69905;U3PXP0;Q4ZGM8 HBA2;HBA1 Hemoglobin subunit alpha no no 0 0 1 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 54.835 55.102 2 0.0017751 20416 20181213_JW_Orientia_Karp_2_3 117.89 65.104 317550000 50403000 47881000 67836000 79600000 31747000 40084000 0 0 + 6310 789;825 5464 38485;38486;38487;38488;38489;38490 24651;24652;24653 24653 451 3 MFLSFPTTK Unmodified 1070.5471 0.54705333 789;825 CON__P01966;Q96T46;G3V1N2;U6A216;Q9BX83;E9M4D4;I1VZV6;D1MGQ2;P69905;U3PXP0;Q4ZGM8 HBA2;HBA1 Hemoglobin subunit alpha no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.638 59.938 2 0.00089614 25001 20181213_JW_Orientia_Karp_1_3 133.23 68.458 87046000 40501000 11939000 14771000 583920 0 10206000 9044400 0 + 6311 789;825 5464 38491;38492;38493;38494;38495;38496;38497 24654;24655;24656;24657;24658;24659 24656 6 MFLVNSFLK Acetyl (Protein N-term);Oxidation (M) 1155.5998 0.59981719 1552 P04632;K7ELJ7;K7EM73;K7EKD8;K7ES78;K7EMQ1 CAPNS1 Calpain small subunit 1 yes no 1 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 77.158 77.141 2 0.00047172 36079 20181213_JW_Orientia_Karp_1_3 141.52 91.394 209700000 108360000 27392000 17581000 0 11451000 6155400 38758000 0 6312 1552 5465 38498;38499;38500;38501;38502;38503 24660;24661;24662;24663;24664;24665 24662 1165 6 MFLVNSFLK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1156.5838 0.58383277 1552 P04632;K7ELJ7;K7EM73;K7EKD8;K7ES78;K7EMQ1 CAPNS1 Calpain small subunit 1 yes no 1 1 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 77.605 77.597 2 0.0017842 29254 20181213_JW_Orientia_Karp_3_1 109.48 75.306 82334000 16358000 12361000 18355000 0 7802800 4625700 22832000 0 6313 1552 5465 38504;38505;38506;38507;38508;38509;38510 24666;24667;24668;24669 24669 1037 1165 4 MFLVNSFLK Acetyl (Protein N-term) 1139.6049 0.60490256 1552 P04632;K7ELJ7;K7EM73;K7EKD8;K7ES78;K7EMQ1 CAPNS1 Calpain small subunit 1 yes no 1 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 80.577 80.477 2 0.0019559 38143 20181213_JW_Orientia_Karp_1_2 117.89 73.443 58232000 34452000 12215000 2714700 0 3777300 2173100 2899600 0 6314 1552 5465 38511;38512;38513;38514;38515;38516 24670;24671 24671 2 MFLVNSFLK Acetyl (Protein N-term);Deamidation (NQ) 1140.5889 0.58891815 1552 P04632;K7ELJ7;K7EM73;K7EKD8;K7ES78;K7EMQ1 CAPNS1 Calpain small subunit 1 yes no 1 1 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 80.798 80.722 2 0.00027022 38207 20181213_JW_Orientia_Karp_1_2 166.68 117.24 29585000 23557000 3422000 1218400 0 1387800 0 0 0 6315 1552 5465 38517;38518;38519;38520 24672;24673 24673 1037 2 MFNEILK Oxidation (M) 909.46299 0.46298935 1127 Karp_00330 yes yes 0 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 43.099 43.369 2 0.025091 14516 20181213_JW_Orientia_Karp_1_3 89.296 7.9145 43379000 13222000 18701000 5958100 0 1291900 0 4205200 0 6316 1127 5466 38521;38522;38523;38524;38525 24674 24674 663 1 MFTQQQPQELAR Oxidation (M) 1491.714 0.7140121 548 B3KY04;Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes no 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 37.453 37.786 2 0.00028099 12089 20181213_JW_Orientia_Karp_1_1 155.33 90.177 74883000 17646000 13330000 26737000 1898800 0 1101500 14170000 0 6317 548 5467 38526;38527;38528;38529;38530;38531 24675 24675 344 1 MFTQQQPQELAR Unmodified 1475.7191 0.71909747 548 B3KY04;Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 41.615 41.882 2 5.2536E-52 13787 20181213_JW_Orientia_Karp_1_3 284.47 158.23 119370000 53303000 28861000 25918000 0 1945200 821710 8521700 0 6318 548 5467 38532;38533;38534;38535;38536;38537;38538 24676;24677;24678;24679;24680 24678 5 MFVLDEADEMLSR Oxidation (M) 1570.7007 0.7007298 387 A8K7F6;P60842;J3KT12;A8K088;P60842-2;J3QLN6;J3QR64;J3KTB5;J3QL43;J3QS69;E7EQG2;Q59F68;Q14240;Q14240-2;J3KSZ0;B4DNH2;Q9NZE6;B4DJX6;J3KTN0;B4DKP9 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 1 1 61.712 61.811 2 0.012605 26128 20181213_JW_Orientia_Karp_1_3 90.913 51.647 9395200 6704800 0 2690400 0 0 0 0 0 6319 387 5468 38539;38540 24681;24682 24682 270 2 MFVLDEADEMLSR Unmodified 1554.7058 0.70581517 387 A8K7F6;P60842;J3KT12;A8K088;P60842-2;J3QLN6;J3QR64;J3KTB5;J3QL43;J3QS69;E7EQG2;Q59F68;Q14240;Q14240-2;J3KSZ0;B4DNH2;Q9NZE6;B4DJX6;J3KTN0;B4DKP9 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 71.491 71.574 2 8.08E-06 32639 20181213_JW_Orientia_Karp_1_2 178.67 124.18 16995000 7198600 4514400 5282200 0 0 0 0 0 6320 387 5468 38541;38542;38543 24683;24684;24685 24684 3 MFVNNEHDLQVCKR 3 Deamidation (NQ) 1791.792 0.79200442 739 Q9BUD9;E9PG46;D6W5G0;B7ZLC4;Q2M2I8-2;Q2M2I8 AAK1 AP2-associated protein kinase 1 yes no 0 3 0 1 By matching By MS/MS 1 1 65.141 65.346 2 0.013735 25241 20181213_JW_Orientia_Karp_3_2 85.807 33.115 24152000 5530400 0 0 0 0 0 0 18622000 6321 739 5469 38544;38545 24686 24686 240;241;1620 0 MFYVPNVSWLQQEATRYQYYLQVK Acetyl (Protein N-term);2 Deamidation (NQ) 3097.4895 0.48954504 612 B4DNZ0 yes yes 1 2 0 1 By MS/MS By matching By MS/MS By matching 2 1 1 1 54.461 54.749 3 0.03693 23489 20181213_JW_Orientia_Karp_1_1 43.198 18.801 64459000 11011000 41659000 0 5560700 6228000 0 0 0 6322 612 5470 38546;38547;38548;38549;38550 24687;24688 24687 1542;1543;1544 1 MGAASAGKRGQK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1219.5979 0.5979197 306 A5D8T8-2 yes yes 1 1 1 2 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 32.481 32.803 2 0.023827 8941 20181213_JW_Orientia_Karp_3_1 69.812 9.6447 57233000 7546500 13508000 13243000 5424800 4472400 3167200 9870500 0 6323 306 5471 38551;38552;38553;38554;38555;38556;38557 24689;24690 24690 1365 215 2 MGADFFR Unmodified 842.37451 0.3745087 1094 Karp_00243 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 49.808 50.078 2 0.036605 18637 20181213_JW_Orientia_Karp_1_3 85.265 35.906 205180000 91789000 60196000 28071000 18416000 0 6711900 0 0 6324 1094 5472 38558;38559;38560;38561;38562 24691 24691 1 MGESDDSILR Oxidation (M) 1137.4972 0.49720261 1742 Q8WVC2;Q6FGH5;P63220 RPS21 40S ribosomal protein S21 yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.047 37.447 2 0.00065456 10451 20181213_JW_Orientia_Karp_2_2 128.6 93.307 18683000 0 3349400 3294800 5594900 1897900 0 4546300 0 6325 1742 5473 38563;38564;38565;38566;38567 24692;24693;24694;24695 24694 1365 4 MGFGDLK Oxidation (M) 782.36328 0.36327531 80 A0A024R3W7;P24534;C9JZW3;F8WF65;F2Z2G2;F8WFC9 EEF1B2 Elongation factor 1-beta yes no 0 0 1 0 By MS/MS By matching 1 1 21.738 21.988 2 0.021962 4499 20181213_JW_Orientia_Karp_1_2 94.163 11.492 7052500 0 5797900 0 0 0 1254600 0 0 6326 80 5474 38568;38569 24696 24696 85 1 MGGEAPELALDPVPQDASTK Unmodified 2024.9725 0.97247121 1775 Q07812-5;Q07812-7;Q07812-8;Q07812;Q07812-2 BAX Apoptosis regulator BAX yes no 0 0 0 0 By MS/MS 1 59.556 59.754 2 0.015147 24903 20181213_JW_Orientia_Karp_1_3 93.478 58.402 0 0 0 0 0 0 0 0 0 6327 1775 5475 38570 24697 24697 1 MGGGGAMNMGDPYGSGGQK 2 Oxidation (M) 1802.7022 0.70220313 1622 Q9BSV4;Q86VG2;P23246;P23246-2;H0Y9K7;H0Y9U2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 2 1 27.38 27.738 2 4.5651E-07 6850 20181213_JW_Orientia_Karp_1_2 152.88 128.62 15932000 3894200 2856600 2707800 2687000 0 915190 2027700 843110 6328 1622 5476 38571;38572;38573;38574;38575;38576;38577;38578;38579 24698;24699;24700;24701;24702;24703 24700 1249;1250;1251 6 MGGGGAMNMGDPYGSGGQK 3 Oxidation (M) 1818.6971 0.69711776 1622 Q9BSV4;Q86VG2;P23246;P23246-2;H0Y9K7;H0Y9U2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 3 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 24.073 24.448 2 0.00011741 5329 20181213_JW_Orientia_Karp_3_1 134.88 112.41 4547400 0 0 0 906920 1046500 908360 1685600 0 6329 1622 5476 38580;38581;38582;38583;38584 24704;24705;24706;24707 24707 1249;1250;1251 4 MGGGGAMNMGDPYGSGGQK Oxidation (M) 1786.7073 0.70728851 1622 Q9BSV4;Q86VG2;P23246;P23246-2;H0Y9K7;H0Y9U2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 0 By MS/MS By MS/MS 2 1 34.305 34.604 2 0.00028 9791 20181213_JW_Orientia_Karp_1_2 122.1 92.17 7850100 0 3648100 4201900 0 0 0 0 0 6330 1622 5476 38585;38586;38587 24708;24709 24708 1249;1250;1251 2 MGGISSILNLMPGINK Unmodified 1643.8739 0.87388356 1270 Karp_01078 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 73.992 74.033 2 0.00087104 34018 20181213_JW_Orientia_Karp_1_3 129.74 75.256 49556000 18831000 15129000 15239000 277910 0 0 0 78787 6331 1270 5477 38588;38589;38590;38591;38592 24710;24711 24711 2 MGGISSILNLMPGINK Oxidation (M) 1659.8688 0.86879818 1270 Karp_01078 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 73.105 73.207 2 0.017853 27083 20181213_JW_Orientia_Karp_3_1 83.226 41.537 65476000 0 18688000 20780000 0 0 0 22046000 3961400 6332 1270 5477 38593;38594;38595;38596 24712;24713 24713 837 2 MGGMEGPFGGGMENMGR 4 Oxidation (M) 1777.6528 0.6528101 1701 P52272-2;P52272;Q7KYM9;M0QZM1;M0QYL3 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 0 0 4 0 By MS/MS By MS/MS 1 1 34.384 34.809 2 0.0065552 10147 20181213_JW_Orientia_Karp_1_3 85.536 70.334 4344100 0 0 2799600 0 0 0 1544500 0 6333 1701 5478 38597;38598 24714;24715 24714 1310;1311;1312;1313 2 MGGQRNTSVGNIVQR Acetyl (Protein N-term);3 Deamidation (NQ) 1660.7839 0.78388257 932 F5H4J8 MARK2 yes yes 1 3 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 77.343 77.335 2 0.015426 31881 20181213_JW_Orientia_Karp_2_1 67.08 9.9155 554360000 197730000 0 124030000 79381000 62958000 79720000 0 10538000 6334 932 5479 38599;38600;38601;38602;38603;38604 24716;24717 24716 326;327;1722;1723 2 MGGSVYPADDEMFSDIYKIR Acetyl (Protein N-term);Oxidation (M) 2351.045 0.044984222 896 E9PJF7 TPT1 yes yes 1 0 1 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 33.699 34.099 3 0.016453 10058 20181213_JW_Orientia_Karp_1_2 60.949 30.81 7159500000 0 2715100000 2185200000 958750000 1297700000 0 2761300 0 6335 896 5480 38605;38606;38607;38608;38609 24718 24718 511 1 MGHAGAIIDGEK Oxidation (M) 1213.5761 0.57612163 1120 Karp_00318 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 3 2 2 2 2 24.05 24.415 2;3 0.011273 5967 20181213_JW_Orientia_Karp_1_1 90.614 47.317 59697000 4724500 8186200 4009200 2966600 13957000 5829000 13558000 6467300 6336 1120 5481 38610;38611;38612;38613;38614;38615;38616;38617;38618;38619;38620;38621;38622;38623;38624 24719;24720;24721;24722 24719 646 4 MGHAGAIIDGEK Unmodified 1197.5812 0.58120701 1120 Karp_00318 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 2 1 28.386 28.642 2;3 0.0083381 7204 20181213_JW_Orientia_Karp_1_3 100.48 47.15 34699000 11567000 9964400 6561200 1141800 3941300 1523100 0 0 6337 1120 5481 38625;38626;38627;38628;38629;38630;38631;38632;38633 24723;24724;24725 24725 3 MGIVMSFQEIK Acetyl (Protein N-term);2 Oxidation (M) 1355.6465 0.64650938 937 F8VPW2 ZDHHC17 yes yes 1 0 2 0 By MS/MS By matching 1 1 43.788 44.24 2 0.027817 14774 20181213_JW_Orientia_Karp_2_3 44.98 12.23 10624000 0 0 0 0 0 6815900 3807900 0 6338 937 5482 38634;38635 24726 24726 527;528 0 MGLAMGGGGGASFDR 2 Oxidation (M) 1414.5969 0.59693343 1701 P52272-2;P52272;Q7KYM9;Q59ES8;Q6P2D7;M0R2I7;M0QY96 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 36.162 36.496 2 0.0019375 10990 20181213_JW_Orientia_Karp_1_3 117.09 71.411 48602000 15164000 13796000 15306000 915420 774680 0 2645600 0 6339 1701 5483 38636;38637;38638;38639;38640;38641 24727;24728;24729;24730;24731 24729 1314;1315 5 MGLKSNKSNQNR Oxidation (M);Deamidation (NQ) 1392.678 0.67796094 1886 Q71RE3 yes yes 0 1 1 2 By MS/MS 1 71.156 71.207 2 0.024813 28860 20181213_JW_Orientia_Karp_2_3 109.44 20.943 1185300000 0 0 0 0 0 1185300000 0 0 6340 1886 5484 38642 24732 24732 1191 1488 1 MGPAMGPALGAGIER Unmodified 1426.7061 0.70608995 1701 P52272-2;P52272;Q7KYM9;Q59ES8;M0QZM1;Q6P2D7;M0R2I7;M0QY96 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 53.663 53.846 2 0.012761 20966 20181213_JW_Orientia_Karp_1_3 92.866 42.582 26860000 10059000 5608700 11193000 0 0 0 0 0 6341 1701 5485 38643;38644;38645 24733 24733 1 MGPAMGPALGAGIER 2 Oxidation (M) 1458.6959 0.69591919 1701 P52272-2;P52272;Q7KYM9;Q59ES8;M0QZM1;Q6P2D7;M0R2I7;M0QY96 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS 1 1 1 42.889 43.327 2 0.00047932 13981 20181213_JW_Orientia_Karp_3_1 136.53 103.3 20594000 0 0 0 0 3408600 0 11369000 5816700 6342 1701 5485 38646;38647;38648 24734;24735;24736 24735 1316;1317 3 MGPFQAERAR Acetyl (Protein N-term);Oxidation (M) 1219.5768 0.57679033 241 Q96MK8;A0A024RCF3 hCG_1640777 yes no 1 0 1 1 By MS/MS 1 32.088 32.339 2 0.027391 8606 20181213_JW_Orientia_Karp_2_3 60.019 21.452 0 0 0 0 0 0 0 0 0 6343 241 5486 38649 24737 24737 177 1 MGPLGLDHMASSIER 2 Oxidation (M) 1644.76 0.75997601 1701 P52272-2;P52272;Q7KYM9;Q59ES8;M0QZM1;Q6P2D7 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By matching By matching By matching By MS/MS 1 1 1 1 39.659 39.858 3 0.013852 12481 20181213_JW_Orientia_Karp_2_3 79.886 60.39 93487000 42412000 22073000 28123000 0 0 879260 0 0 6344 1701 5487 38650;38651;38652;38653 24738 24738 1318;1319 1 MGPPVGGHR Oxidation (M) 922.44432 0.4443196 477 B2R959;Q6NTA2;P14866;M0QXS5;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 0 By MS/MS 1 17.007 17.007 2 0.040433 3052 20181213_JW_Orientia_Karp_1_1 69.176 30.213 1208800 1208800 0 0 0 0 0 0 0 6345 477 5488 38654 24739 24739 1 MGPSGGEGMEPER 2 Oxidation (M) 1364.5337 0.53366447 52 C9J9W2;A8K1D2;A0A024R1S8;Q14847-3;Q14847;Q14847-2;Q9NPR7 LASP1 LIM and SH3 domain protein 1 yes no 0 0 2 0 By MS/MS By MS/MS By matching 1 1 1 21.835 22.22 2 0.00088423 3715 20181213_JW_Orientia_Karp_2_2 133.42 79.669 2186100 0 0 0 0 883850 626000 676270 0 6346 52 5489 38655;38656;38657 24740;24741 24740 59;60 2 MGPVMDR 2 Oxidation (M) 836.35206 0.35205869 1701 P52272-2;P52272;Q7KYM9;Q59ES8;M0QZM1;Q6P2D7;M0R2I7 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By matching By MS/MS By matching By matching 1 1 1 1 18.194 18.419 2 0.037454 3224 20181213_JW_Orientia_Karp_1_3 73.616 38.511 5079200 2734200 0 1824400 295580 0 0 224940 0 6347 1701 5490 38658;38659;38660;38661 24742 24742 1 MGQGQADLAIQMLK Acetyl (Protein N-term);2 Oxidation (M);Deamidation (NQ) 1577.7429 0.74292896 1824 Q49AI6 DYNC2H1 yes yes 1 1 2 0 By MS/MS 1 50.005 50.203 2 0.016787 18685 20181213_JW_Orientia_Karp_1_3 64.82 22.484 7387200 0 0 7387200 0 0 0 0 0 6348 1824 5491 38662 24743 24743 2000 1454;1455 1 MGQMAMGGAMGINNR 4 Oxidation (M) 1601.6419 0.64185148 367 A8K525;Q15233-2;Q15233 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 4 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 23.115 23.548 2 0.014016 4993 20181213_JW_Orientia_Karp_3_1 72.006 48.861 2543300 0 0 238550 0 613090 284290 841730 565600 6349 367 5492 38663;38664;38665;38666;38667;38668 24744;24745 24745 257;258;259;260 2 MGQMAMGGAMGINNR 4 Oxidation (M);Deamidation (NQ) 1602.6259 0.62586707 367 A8K525;Q15233-2;Q15233 NONO Non-POU domain-containing octamer-binding protein yes no 0 1 4 0 By MS/MS 1 25.706 26.057 2 0.0372 5169 20181213_JW_Orientia_Karp_2_2 106.29 74.448 0 0 0 0 0 0 0 0 0 6350 367 5492 38669 24746 24746 257;258;259;260 1 MGRNPWDSPCPARSLPQIAAVAR Oxidation (M) 2565.2693 0.26927912 597 E7ESC5;B4DM14;Q8N7U0;F5GZA4 CCDC74B;CCDC74A yes no 0 0 1 2 By MS/MS 1 46.644 47.154 3 0.0337 15054 20181213_JW_Orientia_Karp_3_2 51.819 14.148 3721100 0 0 0 0 0 0 0 3721100 6351 597 5493 38670 24747 24747 0 MGTQLNVACKLSNNRISK 3 Deamidation (NQ) 2036.0031 0.0030598275 501 H3BMM1;H3BV44;H3BRD5;B2RTY4-5;B2RTY4-2;B2RTY4;B2RTY4-4 MYO9A Unconventional myosin-IXa yes no 0 3 0 2 By MS/MS 1 25.48 25.48 4 0.041446 6465 20181213_JW_Orientia_Karp_1_1 44.005 16.509 2490600 2490600 0 0 0 0 0 0 0 6352 501 5494 38671 24748 24748 1480 0 MHAFENLEKR Oxidation (M);Deamidation (NQ) 1290.6027 0.60267073 333 A8K0G4 yes yes 0 1 1 1 By MS/MS 1 27.194 27.445 2 0.025771 6276 20181213_JW_Orientia_Karp_2_3 84.476 20.178 0 0 0 0 0 0 0 0 0 6353 333 5495 38672 24749 24749 124 222 1 MHAQRQFVVAAVR Acetyl (Protein N-term);Deamidation (NQ) 1554.8089 0.80891553 214 Q99490-2;A0A024RB55 CENTG1 yes no 1 1 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 41.562 41.762 2 0.0035183 13122 20181213_JW_Orientia_Karp_2_1 110.41 38.165 44192000 15715000 21053000 0 0 0 7423300 0 0 6354 214 5496 38673;38674;38675;38676 24750;24751 24751 1327;1328 2 MHTYAELIK Oxidation (M) 1120.5587 0.55868065 1449 Karp_02529 yes yes 0 0 1 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 2 2 34.413 34.776 2;3 0.0031739 9443 20181213_JW_Orientia_Karp_2_1 109.86 41.882 71146000 7384900 10293000 27041000 5355300 6622800 0 14450000 0 6355 1449 5497 38677;38678;38679;38680;38681;38682;38683;38684 24752;24753;24754 24753 1055 3 MHTYAELIK Unmodified 1104.5638 0.56376603 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 38.224 38.536 3 0.00086412 12008 20181213_JW_Orientia_Karp_1_3 112.41 25.529 12958000 0 5278500 5943400 838980 896860 0 0 0 6356 1449 5497 38685;38686;38687;38688 24755;24756 24756 2 MIAGQVLDINLAAEPK Oxidation (M) 1697.9022 0.9022068 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575;D3DPI2;B4DMJ1;B4DSU6;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251 HNRNPC;hCG_1641229 Heterogeneous nuclear ribonucleoproteins C1/C2 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 62.077 62.392 2 1.5394E-13 26531 20181213_JW_Orientia_Karp_1_3 201.08 106.54 156630000 69546000 32181000 18110000 3357400 0 26245000 237990 6949600 6357 400;452 5498 38689;38690;38691;38692;38693;38694;38695;38696 24757;24758;24759;24760;24761;24762;24763 24759 274 7 MIAGQVLDINLAAEPK Unmodified 1681.9073 0.90729217 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575;D3DPI2;B4DMJ1;B4DSU6;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251 HNRNPC;hCG_1641229 Heterogeneous nuclear ribonucleoproteins C1/C2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 65.609 65.802 2;3 4.7158E-14 22880 20181213_JW_Orientia_Karp_3_1 208.15 154.18 258060000 72669000 50689000 35931000 5099100 41335000 21004000 26316000 5015500 6358 400;452 5498 38697;38698;38699;38700;38701;38702;38703;38704;38705;38706;38707;38708;38709 24764;24765;24766;24767;24768;24769;24770;24771;24772;24773;24774 24773 11 MIALFNK Oxidation (M);Deamidation (NQ) 852.44153 0.44152563 177 B2R7U5;A0A024R977;Q96BM9 ARL8A ADP-ribosylation factor-like protein 8A yes no 0 1 1 0 By matching By matching By MS/MS By matching 1 1 1 1 71.792 71.892 2 0.040099 32594 20181213_JW_Orientia_Karp_1_3 91.584 24.549 17856000 9071000 3135300 1269200 0 0 0 4380500 0 6359 177 5499 38710;38711;38712;38713 24775 24775 1 MIATDPDDTHAYNVADFESLSR Oxidation (M) 2483.0911 0.091082791 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y4P7 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 57.011 57.328 3 0.017012 23330 20181213_JW_Orientia_Karp_1_3 68.411 44.382 37943000 10678000 7703700 11594000 5014600 2656700 0 296580 0 6360 852 5500 38714;38715;38716;38717;38718;38719 24776 24776 488 1 MIDIILPDGSVK Unmodified 1299.7108 0.7108242 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 65.371 65.554 2 0.00069575 29100 20181213_JW_Orientia_Karp_1_1 143.4 73.77 22029000 11953000 0 7745500 0 0 0 2330300 0 6361 1376 5501 38720;38721;38722 24777 24777 1 MIDIILPDGSVK Oxidation (M) 1315.7057 0.70573882 1376 Karp_02113 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 60.934 61.221 2 0.0055303 23811 20181213_JW_Orientia_Karp_2_1 103.22 24.286 69098000 18202000 14494000 10817000 3167000 6750400 11374000 0 4294100 6362 1376 5501 38723;38724;38725;38726;38727;38728;38729 24778;24779;24780;24781;24782 24780 970 5 MIDNGIELNDGILESK Deamidation (NQ) 1760.8502 0.8502308 1150 Karp_00511 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 1 1 1 1 1 1 65.788 65.98 2 0.0058757 29322 20181213_JW_Orientia_Karp_1_1 115.12 72.64 46987000 4087600 20946000 9891100 3021400 3587900 2784100 2668600 0 6363 1150 5502 38730;38731;38732;38733;38734;38735;38736;38737 24783;24784 24783 545 2 MIDSGQEK Oxidation (M) 922.4066 0.40659669 1272 Karp_01080 yes yes 0 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 14.967 15.192 2 0.038863 2239 20181213_JW_Orientia_Karp_2_1 73.26 11.298 3919900 1254800 1471800 544270 648960 0 0 0 0 6364 1272 5503 38738;38739;38740;38741 24785 24785 1 MIEDLQNELK Oxidation (M) 1247.6068 0.60675306 680 B4E265;Q8IY18 SMC5 Structural maintenance of chromosomes protein 5 yes no 0 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 59.665 60.03 2 0.007713 21821 20181213_JW_Orientia_Karp_3_2 94.692 13.354 8271700 0 0 0 1147100 3018300 3504500 0 601710 6365 680 5504 38742;38743;38744;38745 24786 24786 420 1 MIEGLYK Oxidation (M) 868.43644 0.43644025 1781 Q08AD1-2;Q08AD1-3;Q08AD1 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 49.717 50.069 2 0.020914 17510 20181213_JW_Orientia_Karp_2_1 95.793 12.416 87659000 0 0 28363000 40873000 1421700 15259000 0 1742300 6366 1781 5505 38746;38747;38748;38749;38750 24787;24788 24788 1387 2 MIEWNVNWK Oxidation (M);Deamidation (NQ) 1235.5645 0.56449431 2026 yes no 0 1 1 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 60.245 60.54 2 0.01755 25635 20181213_JW_Orientia_Karp_1_2 89.296 24.044 177170000 22519000 20594000 21983000 15294000 38441000 56170000 0 2172700 + 6367 2026 5506 38751;38752;38753;38754;38755;38756;38757;38758 24789 24789 1241 1551 1 MIHVPVNANNSELAIR Oxidation (M) 1792.9254 0.92540185 1124 Karp_00325 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 46.538 46.841 3 1.9954E-09 15672 20181213_JW_Orientia_Karp_2_1 190.37 145.08 271830000 61607000 49056000 38893000 35332000 24100000 42031000 0 20810000 6368 1124 5507 38759;38760;38761;38762;38763;38764;38765;38766 24790;24791;24792;24793;24794;24795;24796;24797 24793 653 8 MIHVPVNANNSELAIR Unmodified 1776.9305 0.93048723 1124 Karp_00325 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 49.06 49.361 3 1.0519E-13 18172 20181213_JW_Orientia_Karp_1_3 195.94 123.62 443900000 100700000 94582000 109040000 60213000 17793000 20749000 0 40826000 6369 1124 5507 38767;38768;38769;38770;38771;38772;38773 24798;24799;24800;24801 24800 4 MIHVPVNANNSELAIR Oxidation (M);2 Deamidation (NQ) 1794.8934 0.89343302 1124 Karp_00325 yes yes 0 2 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 51.479 51.74 3 0.015737 19845 20181213_JW_Orientia_Karp_1_2 71.316 48.925 55483000 22158000 11965000 2364800 0 6361000 12295000 0 339700 6370 1124 5507 38774;38775;38776;38777;38778;38779 24802;24803;24804;24805 24803 505;506;507 653 4 MIHVPVNANNSELAIR Deamidation (NQ) 1777.9145 0.91450282 1124 Karp_00325 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 51.642 51.892 3 4.7147E-05 18748 20181213_JW_Orientia_Karp_2_2 151.3 101.01 230520000 81393000 41532000 46603000 26967000 18051000 15972000 0 0 6371 1124 5507 38780;38781;38782;38783;38784;38785;38786;38787;38788;38789;38790;38791 24806;24807;24808;24809;24810;24811 24810 505;506;507 6 MIHVPVNANNSELAIR 2 Deamidation (NQ) 1778.8985 0.8985184 1124 Karp_00325 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 1 2 2 1 54.421 54.696 3 0.00023554 21729 20181213_JW_Orientia_Karp_1_2 135.86 74.955 143360000 53314000 47870000 13149000 9104300 9904200 10022000 0 0 6372 1124 5507 38792;38793;38794;38795;38796;38797;38798;38799;38800;38801;38802 24812;24813;24814;24815;24816 24814 505;506;507 3 MIHVPVNANNSELAIR Oxidation (M);Deamidation (NQ) 1793.9094 0.90941744 1124 Karp_00325 yes yes 0 1 1 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1 48.964 49.299 3 0.020098 17102 20181213_JW_Orientia_Karp_2_1 71.344 25.554 89362000 0 16678000 27150000 20379000 10887000 9973500 0 4295300 6373 1124 5507 38803;38804;38805;38806;38807;38808;38809;38810;38811 24817;24818;24819 24818 505;506;507 653 2 MIKLADYYPINSNFK Oxidation (M);2 Deamidation (NQ) 1833.8859 0.88588803 253 Q9Y6R3;A0A024RD97;A5JJ20;Q9Y6R1-3;Q9Y6R1-4;Q9Y6R1-2;Q9Y6R1;Q9Y6R1-5 NBC;SLC4A4 Anion exchange protein;Electrogenic sodium bicarbonate cotransporter 1 yes no 0 2 1 1 By MS/MS 1 64.575 65.026 2 0.018088 22580 20181213_JW_Orientia_Karp_3_1 80.871 35.218 7394800 0 0 0 0 0 0 7394800 0 6374 253 5508 38812 24820 24820 95;96 183 1 MIKYDPNTFLSENISKSSII 2 Deamidation (NQ) 2301.145 0.14501584 1821 Q2QDE5 yes yes 0 2 0 2 By MS/MS 1 61.808 62.256 3 0.012976 24334 20181213_JW_Orientia_Karp_2_1 74.744 10.267 117320000 0 0 0 117320000 0 0 0 0 6375 1821 5509 38813 24821 24821 1168;1169 0 MILIQDGSQNTNVDK Oxidation (M) 1690.8196 0.81959938 1930;645 B4DV73;Q92945;M0R0I5;M0QYH3 KHSRP Far upstream element-binding protein 2 no no 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 41.507 41.682 2 0.0032741 14309 20181213_JW_Orientia_Karp_1_1 112.5 38.717 8187300 3957900 4229400 0 0 0 0 0 0 6376 645;1930 5510 38814;38815;38816 24822;24823 24822 398 2 MILIQDGSQNTNVDK Unmodified 1674.8247 0.82468476 1930;645 B4DV73;Q92945;M0R0I5;M0QYH3 KHSRP Far upstream element-binding protein 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 47.747 47.937 2 0.00018475 17732 20181213_JW_Orientia_Karp_1_1 145 47.402 30481000 8980600 8728800 7177500 0 2083400 3510900 0 0 6377 645;1930 5510 38817;38818;38819;38820;38821 24824;24825;24826;24827;24828 24824 5 MILLEVNNR Unmodified 1100.6012 0.60121417 1501 Q53R19;O15144;G5E9S7;C9JTV5;G5E9J0 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 0 0 0 0 By MS/MS By matching 1 1 52.662 52.937 2 0.035929 21214 20181213_JW_Orientia_Karp_1_1 74.376 12.377 6917600 5135600 0 0 1782000 0 0 0 0 6378 1501 5511 38822;38823 24829 24829 1 MINLSVPDTIDER Oxidation (M) 1517.7396 0.73955814 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;U3KQI3;Q59GX5;V9HWJ7;Q53FI1;A0A024RDT4;P13796;Q5TBN3 PLS3;HEL-S-37;LCP1 Plastin-3;Plastin-2 yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 1 1 57.018 57.301 2 0.0025167 23835 20181213_JW_Orientia_Karp_1_1 117.86 59.636 48275000 27041000 0 21118000 0 0 0 116050 0 6379 623 5512 38824;38825;38826 24830;24831;24832 24830 383 3 MINLSVPDTIDER Unmodified 1501.7446 0.74464352 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;U3KQI3;Q59GX5;V9HWJ7;Q53FI1;A0A024RDT4;P13796;Q5TBN3 PLS3;HEL-S-37;LCP1 Plastin-3;Plastin-2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 60.574 60.894 2 0.013301 25541 20181213_JW_Orientia_Karp_1_3 93.839 42.587 174770000 41512000 37710000 34259000 10737000 20091000 13324000 4460100 12682000 6380 623 5512 38827;38828;38829;38830;38831;38832;38833;38834 24833;24834 24834 2 MINTDLSR Oxidation (M) 964.46478 0.46478027 1660 Q59GY2;P36578;B4DMJ6;H3BM89;B4DMJ2 RPL4 60S ribosomal protein L4 yes no 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 31.658 31.985 2 0.031426 9257 20181213_JW_Orientia_Karp_1_1 78.264 9.477 20222000 4842500 6813800 6356700 1071400 0 410060 0 727570 6381 1660 5513 38835;38836;38837;38838;38839;38840 24835 24835 1 MIQMQTILNVADNSGAK 2 Oxidation (M) 1864.9023 0.90228315 1232 Karp_00899 yes yes 0 0 2 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 49.237 49.491 2 1.0624E-15 17270 20181213_JW_Orientia_Karp_2_1 207.4 140.32 15238000 6309900 0 0 0 3560400 0 0 5367500 6382 1232 5514 38841;38842;38843;38844 24836;24837;24838;24839 24837 796;797 4 MIQMQTILNVADNSGAK Unmodified 1832.9125 0.91245391 1232 Karp_00899 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 64.011 64.154 2;3 6.1738E-12 28022 20181213_JW_Orientia_Karp_1_2 212.03 142.58 61039000 25418000 14829000 20255000 0 0 0 0 536710 6383 1232 5514 38845;38846;38847;38848;38849;38850 24840;24841;24842 24841 3 MIQMQTILNVADNSGAK 2 Oxidation (M);Deamidation (NQ) 1865.8863 0.88629874 1232 Karp_00899 yes yes 0 1 2 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 50.932 51.385 2 0.0022633 17422 20181213_JW_Orientia_Karp_3_1 103.66 60.113 19258000 0 9012000 6100100 0 0 0 4015600 130710 6384 1232 5514 38851;38852;38853;38854 24843;24844 24844 636 796;797 2 MIQMQTILNVADNSGAK Oxidation (M) 1848.9074 0.90736853 1232 Karp_00899 yes yes 0 0 1 0 By MS/MS 1 52.302 52.5 3 0.034234 20226 20181213_JW_Orientia_Karp_1_3 66.738 14.729 7912700 0 0 7912700 0 0 0 0 0 6385 1232 5514 38855 24845 24845 796;797 0 MIRFILIQNR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1361.7489 0.74894104 1705 X6R390;P53680-2;P53680 AP2S1 AP-2 complex subunit sigma yes no 1 1 1 1 By MS/MS 1 37.111 37.621 3 0.02286 10717 20181213_JW_Orientia_Karp_3_2 64.04 26.896 0 0 0 0 0 0 0 0 0 6386 1705 5515 38856 24846 24846 1127 1325 1 MISDAIPELK Unmodified 1115.5896 0.58964643 96 Q0QF37;Q75MT9;Q6FHZ0;A0A024R4K3;P40926;P40926-2;G3XAL0;B3KTM1 MDH2 Malate dehydrogenase;Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 55.09 55.374 2 0.01247 22303 20181213_JW_Orientia_Karp_1_2 88.819 33.449 14899000 0 11284000 0 0 1524600 2090300 0 0 6387 96 5516 38857;38858;38859;38860 24847;24848 24847 2 MISINEVQSIANYCK Unmodified 1768.8488 0.84879102 1319 Karp_01281 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 60.738 61.048 2 0.0095021 22480 20181213_JW_Orientia_Karp_3_2 97.957 66.889 35449000 14023000 3825700 7727300 0 0 2534300 535630 6803200 6388 1319 5517 38861;38862;38863;38864;38865;38866 24849 24849 1 MITEFENPYILLLDQK Oxidation (M) 1982.0071 0.0070657979 1296 Karp_01187 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 73.504 73.536 2;3 6.1625E-09 29729 20181213_JW_Orientia_Karp_3_2 180.95 123.06 7277100000 1734900000 1004200000 1548400000 344340000 485540000 361100000 1366300000 432220000 6389 1296 5518 38867;38868;38869;38870;38871;38872;38873;38874;38875;38876;38877;38878;38879;38880;38881;38882 24850;24851;24852;24853;24854;24855;24856;24857;24858;24859;24860;24861 24860 850 12 MITEFENPYILLLDQK Unmodified 1966.0122 0.012151176 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 74.363 74.403 2 4.6203E-49 34514 20181213_JW_Orientia_Karp_1_2 258.39 185.86 4609800000 1198700000 995340000 1702400000 63223000 92912000 154430000 342330000 60553000 6390 1296 5518 38883;38884;38885;38886;38887;38888;38889;38890;38891;38892 24862;24863;24864;24865;24866;24867;24868;24869;24870;24871;24872;24873 24864 12 MITSAAAALADTLLENNNR Oxidation (M) 2003.9946 0.99460363 1428 Karp_02381 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 69.662 69.81 2;3 5.1449E-10 27775 20181213_JW_Orientia_Karp_2_2 176.42 128.88 72326000 18795000 0 8048100 0 13790000 7197800 15479000 9017000 6391 1428 5519 38893;38894;38895;38896;38897;38898;38899;38900;38901;38902;38903;38904 24874;24875;24876;24877;24878;24879;24880 24877 1032 7 MITSAAAALADTLLENNNR Oxidation (M);Deamidation (NQ) 2004.9786 0.97861922 1428 Karp_02381 yes yes 0 1 1 0 By MS/MS By MS/MS By matching 1 1 1 70.943 71.025 3 0.0052506 32535 20181213_JW_Orientia_Karp_1_1 88.951 56.236 17969000 7672200 5858800 4437600 0 0 0 0 0 6392 1428 5519 38905;38906;38907 24881;24882;24883 24882 945;946 1032 3 MITSAAAALADTLLENNNR Unmodified 1987.9997 0.99968901 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 72.318 72.356 3 0.00058265 33223 20181213_JW_Orientia_Karp_1_1 122.97 18.812 64657000 25510000 0 7139200 0 11682000 2590100 17736000 0 6393 1428 5519 38908;38909;38910;38911;38912 24884;24885;24886 24884 3 MITSAAAALADTLLENNNR Deamidation (NQ) 1988.9837 0.98370459 1428 Karp_02381 yes yes 0 1 0 0 By MS/MS By matching 1 1 73.366 73.341 3 5.1772E-06 33778 20181213_JW_Orientia_Karp_1_1 154.52 84.186 22807000 19452000 0 0 0 0 3355300 0 0 6394 1428 5519 38913;38914 24887 24887 945;946 0 MIYASSK Oxidation (M) 814.38949 0.38949006 1625;935 F6RFD5;V9HWA6;P60981;B7Z9M9;P60981-2;V9HWI5;P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;Q549N0;Q9Y281-3;Q9Y281 DSTN;HEL32;HEL-S-15;CFL1;CFL2 Destrin;Cofilin-1;Cofilin-2 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 2 18.548 18.984 2 0.0089198 2719 20181213_JW_Orientia_Karp_2_2 143.02 88.233 65418000 10865000 14090000 0 14553000 2847900 10603000 7452200 5006500 6395 935;1625 5520 38915;38916;38917;38918;38919;38920;38921;38922;38923;38924 24888;24889;24890;24891;24892;24893;24894;24895;24896;24897 24892 526 10 MKDTDSEEEIR Oxidation (M) 1367.5875 0.58747418 497 Q9BRL5;B4DJ51;B2RDW0;H0Y7A7;P62158;E7ETZ0;E7EMB3;A8K1M2;G3V361;Q96HY3;G3V226 CALM3;CALM2;CALM1 Calmodulin yes no 0 0 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 20.366 20.633 3 8.1772E-05 3181 20181213_JW_Orientia_Karp_2_2 163.84 82.922 9293900 1889000 0 353930 3471000 1037700 2024700 517500 0 6396 497 5521 38925;38926;38927;38928;38929;38930 24898;24899;24900 24899 318 3 MKEAGQMQNLESARAGR 2 Oxidation (M);3 Deamidation (NQ) 1910.8462 0.84622483 463 F2Z2H0;F2Z2J8;Q6NSE0;Q569J7;B2R742;Q9BWV3-2;Q9BWV3-3;Q9BWV3 CDADC1 Cytidine and dCMP deaminase domain-containing protein 1 yes no 0 3 2 2 By MS/MS 1 57.449 57.7 2 0.041759 21717 20181213_JW_Orientia_Karp_2_2 41.48 8.8642 5032700 0 0 0 0 5032700 0 0 0 6397 463 5522 38931 24901 24901 1459;1460 1 MKGDYDVTVPK Oxidation (M) 1267.6118 0.61183843 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 1 By MS/MS 1 32.225 32.575 3 0.032362 9160 20181213_JW_Orientia_Karp_1_2 74.698 42.092 0 0 0 0 0 0 0 0 0 6398 1782 5523 38932 24902 24902 1 MKLQAVMETLLQR Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1619.8263 0.82626466 1959 Q99856 ARID3A AT-rich interactive domain-containing protein 3A yes yes 1 2 1 1 By MS/MS 1 60.124 60.634 2 0.007309 22196 20181213_JW_Orientia_Karp_3_2 81.972 10.623 3620900 0 0 0 0 0 0 0 3620900 6399 1959 5524 38933 24903 24903 2078;2079 1517 1 MKMSQMNNLISLSIK 2 Oxidation (M);Deamidation (NQ) 1769.8726 0.87256293 1469 L8E9L7 WDR63 yes yes 0 1 2 1 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 67.566 67.767 2 0.013281 27147 20181213_JW_Orientia_Karp_2_1 83.081 22.914 187070000 56647000 30090000 45484000 0 16987000 10404000 16991000 10468000 6400 1469 5525 38934;38935;38936;38937;38938;38939;38940;38941 24904;24905 24905 1887 1091;1092 2 MKNSMASMSQQLK Oxidation (M);3 Deamidation (NQ) 1501.6463 0.64625138 360 Q59GL9;B4E0A7;B3KRB7;G3V105;A8K4I7;B4DP95;O14920-4;O14920-2;O14920 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta yes no 0 3 1 1 By MS/MS 1 58.297 58.848 2 0.03933 20379 20181213_JW_Orientia_Karp_3_1 41.283 13.079 298510 0 0 0 0 0 0 298510 0 6401 360 5526 38942 24906 24906 1409;1410 0 MKSLGNKFMHLTNYSVNK Oxidation (M);2 Deamidation (NQ) 2129.0285 0.028546297 586 B4DJF5 yes yes 0 2 1 2 By MS/MS 1 64.978 65.228 2 0.023597 28523 20181213_JW_Orientia_Karp_1_2 69.314 10.72 0 0 0 0 0 0 0 0 0 6402 586 5527 38943 24907 24907 206;207 358 1 MKVQSFGER Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1139.5281 0.52810881 1909 Q8N8A8 FAM169B Protein FAM169B yes yes 1 1 1 1 By MS/MS 1 28.903 29.101 2 0.029041 7442 20181213_JW_Orientia_Karp_1_3 88.37 22.904 1936600 0 0 1936600 0 0 0 0 0 6403 1909 5528 38944 24908 24908 2043 0 MKYQPLYDR Oxidation (M) 1228.591 0.59104341 1297 Karp_01188 yes yes 0 0 1 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 29.371 29.772 3 0.018148 7700 20181213_JW_Orientia_Karp_1_3 93.649 54.501 107970000 31339000 20381000 25856000 16967000 5602200 0 5685900 2137600 6404 1297 5529 38945;38946;38947;38948;38949;38950;38951 24909;24910;24911 24910 857 3 MKYQPLYDR Acetyl (Protein N-term);Oxidation (M) 1270.6016 0.6016081 1297 Karp_01188 yes yes 1 0 1 1 By MS/MS 1 40.221 40.872 2 0.036399 12792 20181213_JW_Orientia_Karp_3_1 50.473 7.6037 0 0 0 0 0 0 0 0 0 6405 1297 5529 38952 24912 24912 857 1 MLAGTHFVQQQANVLLNEK Oxidation (M) 2156.1048 0.10482278 1428 Karp_02381 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.512 51.857 3 3.7382E-07 18498 20181213_JW_Orientia_Karp_2_2 156.67 117.14 192770000 38522000 32627000 38072000 25681000 28613000 14767000 11676000 2810900 6406 1428 5530 38953;38954;38955;38956;38957;38958;38959;38960 24913;24914;24915;24916;24917;24918;24919;24920;24921 24918 1033 9 MLAGTHFVQQQANVLLNEK Unmodified 2140.1099 0.10990816 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 53.925 54.284 3 1.2329E-05 19843 20181213_JW_Orientia_Karp_2_1 144.3 101.66 150240000 38173000 0 20344000 17866000 35867000 18364000 924140 18700000 6407 1428 5530 38961;38962;38963;38964;38965;38966;38967 24922;24923;24924;24925;24926 24924 5 MLDAEDIVGTARPDEK Oxidation (M) 1774.8407 0.84072875 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;Q86TX4;G3V2N5;B4DRP5;G3V2W4 ACTN1 Alpha-actinin-1 yes no 0 0 1 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.827 47.147 3 0.0014232 17172 20181213_JW_Orientia_Karp_1_1 130.66 78.932 188890000 66235000 49854000 22877000 10584000 6937300 10634000 359990 21410000 6408 133 5531 38968;38969;38970;38971;38972;38973;38974;38975 24927;24928;24929;24930 24927 118 4 MLDAEDIVNTARPDEK Oxidation (M) 1831.8622 0.86219247 1509 O43707;B4E337;B4DSX0 ACTN4 Alpha-actinin-4 yes no 0 0 1 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.786 48.131 3 0.0043719 17224 20181213_JW_Orientia_Karp_1_3 114.7 76.527 170270000 24801000 49237000 31100000 14696000 10219000 11088000 79908 29046000 6409 1509 5532 38976;38977;38978;38979;38980;38981;38982;38983 24931;24932;24933;24934 24932 1117 4 MLDAEDIVNTARPDEK Unmodified 1815.8673 0.86727785 1509 O43707;B4E337;B4DSX0 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 51.512 51.813 3 0.010448 20336 20181213_JW_Orientia_Karp_1_1 95.57 45.546 216840000 65801000 49523000 77559000 9057600 6072400 8370100 0 456310 6410 1509 5532 38984;38985;38986;38987;38988;38989;38990 24935;24936 24935 2 MLDCNQPRYLLK Acetyl (Protein N-term);Oxidation (M) 1607.78 0.77998317 573 C9J4M6;B4DH29 POLR2B DNA-directed RNA polymerase yes no 1 0 1 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 70.038 70.202 2 0.0090833 31442 20181213_JW_Orientia_Karp_1_3 86.67 8.1577 21764000 9993500 0 4738100 0 0 0 4529800 2503000 6411 573 5533 38991;38992;38993;38994 24937;24938;24939 24938 354 0 MLDFLAENNLCGQAILR Acetyl (Protein N-term);3 Deamidation (NQ) 2021.9438 0.94381361 1786 Q12768 KIAA0196 WASH complex subunit strumpellin yes yes 1 3 0 0 By MS/MS 1 49.57 50.18 2 0.038766 16812 20181213_JW_Orientia_Karp_3_2 44.616 7.4358 1263600 0 0 0 0 0 0 0 1263600 6412 1786 5534 38995 24940 24940 1988 0 MLDLMLEAVNNIK 2 Oxidation (M);2 Deamidation (NQ) 1536.7415 0.74153198 473 C9J388;C9J2C3;B2R8J0;Q14435-2;Q14435 GALNT3 Polypeptide N-acetylgalactosaminyltransferase;Polypeptide N-acetylgalactosaminyltransferase 3 yes no 0 2 2 0 By MS/MS 1 56.895 57.505 2 0.031585 20190 20181213_JW_Orientia_Karp_3_2 51.927 7.6174 0 0 0 0 0 0 0 0 0 6413 473 5535 38996 24941 24941 180;181 1 MLDQTLLDLNEM 2 Oxidation (M) 1466.6633 0.66328166 494 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-5;Q5VU61;J3KN67;Q8NAG3;B4DWT5;B4DQ80;P06753-7;Q8NI98;A0A024R4K5 DKFZp686J1372;TPM3;OK/SW-cl.5;hCG_1787567 Tropomyosin alpha-3 chain yes no 0 0 2 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.963 72.041 2 1.1123E-30 29003 20181213_JW_Orientia_Karp_2_2 244.01 179.29 93613000 9502400 10728000 22334000 4588400 15216000 13877000 17367000 0 6414 494 5536 38997;38998;38999;39000;39001;39002;39003 24942;24943;24944;24945;24946;24947 24945 316;317 6 MLDQTLLDLNEM Oxidation (M) 1450.6684 0.66836704 494 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-5;Q5VU61;J3KN67;Q8NAG3;B4DWT5;B4DQ80;P06753-7;Q8NI98;A0A024R4K5 DKFZp686J1372;TPM3;OK/SW-cl.5;hCG_1787567 Tropomyosin alpha-3 chain yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 74.316 74.332 2 7.7947E-08 34211 20181213_JW_Orientia_Karp_1_3 191.33 122.48 33170000 14674000 5673200 7510600 299980 1910200 3102000 0 0 6415 494 5536 39004;39005;39006;39007;39008;39009 24948;24949;24950 24949 316;317 3 MLDQTLLDLNEM Unmodified 1434.6735 0.67345241 494 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-5;Q5VU61;J3KN67;Q8NAG3;B4DWT5;B4DQ80;P06753-7;Q8NI98;A0A024R4K5 DKFZp686J1372;TPM3;OK/SW-cl.5;hCG_1787567 Tropomyosin alpha-3 chain yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 76.52 76.52 2 0.0055252 36053 20181213_JW_Orientia_Karp_1_2 106.67 31.28 15051000 11352000 2660600 0 0 1038900 0 0 0 6416 494 5536 39010;39011;39012 24951 24951 1 MLDVLQELR Acetyl (Protein N-term);Deamidation (NQ) 1158.5955 0.59546009 963 K7EJ58;K7EQU8;H0UID0 RAD51D yes no 1 1 0 0 By MS/MS 1 37.966 38.476 2 0.022725 11169 20181213_JW_Orientia_Karp_3_2 70.525 27.442 0 0 0 0 0 0 0 0 0 6417 963 5537 39013 24952 24952 1739 1 MLDYDLPK Oxidation (M) 1009.479 0.47903335 1252 Karp_00931 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 45.703 46.028 2 0.0043507 15517 20181213_JW_Orientia_Karp_2_3 119.17 76.05 93937000 35719000 23490000 21684000 7765500 0 4831100 447630 0 6418 1252 5538 39014;39015;39016;39017;39018;39019;39020;39021;39022 24953;24954;24955;24956;24957;24958;24959;24960 24959 816 8 MLDYDLPK Unmodified 993.48412 0.48411873 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.066 50.316 2 0.015894 19354 20181213_JW_Orientia_Karp_1_1 94.302 60.13 122210000 45557000 23969000 28002000 14184000 5415100 5082500 0 0 6419 1252 5538 39023;39024;39025;39026;39027;39028 24961;24962;24963 24961 3 MLDYDLPKPLLK Oxidation (M) 1460.7949 0.79488818 1252 Karp_00931 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 54.262 54.512 3 0.0076296 19907 20181213_JW_Orientia_Karp_2_2 111.27 67.308 80458000 3683900 0 43334000 7352600 9925300 16163000 0 0 6420 1252 5539 39029;39030;39031;39032;39033 24964;24965;24966;24967;24968 24967 816 5 MLEETLR Oxidation (M) 906.44807 0.44806757 643 B4DUT7 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 27.64 28.017 2 0.025044 5905 20181213_JW_Orientia_Karp_2_2 89.369 18.01 21214000 5767900 4033000 6002500 0 803760 0 4117700 489270 6421 643 5540 39034;39035;39036;39037;39038;39039 24969 24969 397 1 MLEFLNHAMQSK 2 Oxidation (M) 1479.685 0.68502015 1118 Karp_00308 yes yes 0 0 2 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.186 38.503 3 0.0071951 11663 20181213_JW_Orientia_Karp_3_1 91.701 45.095 62482000 11688000 14747000 20091000 3715500 4056800 0 8183100 0 6422 1118 5541 39040;39041;39042;39043;39044;39045 24970;24971;24972;24973;24974 24974 640;641 5 MLEGNYQVMLKSGTNILYWR Oxidation (M);2 Deamidation (NQ) 2433.1709 0.17085344 416 A8MWY0-2 yes yes 0 2 1 1 By matching By matching By matching By MS/MS 1 1 1 1 43.153 43.391 4 0.038151 13714 20181213_JW_Orientia_Karp_2_2 40.179 17.958 56121000 11790000 14853000 0 4480300 24998000 0 0 0 6423 416 5542 39046;39047;39048;39049 24975 24975 1436 0 MLEIASILDASYFR Unmodified 1627.828 0.82797922 1242 Karp_00909 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 75.317 75.316 2 0.015484 30710 20181213_JW_Orientia_Karp_2_3 109.72 69.804 12645000 0 4059900 6936400 0 0 1648600 0 0 6424 1242 5543 39050;39051;39052 24976 24976 1 MLENYRNLVSLGLTVSK Oxidation (M);2 Deamidation (NQ) 1954.0081 0.0081284304 539 M0R067;O95780-3;B3KUX2 ZNF682 yes no 0 2 1 1 By MS/MS By matching 1 1 47.069 47.5 3 0.018711 16318 20181213_JW_Orientia_Karp_2_3 71.316 25.864 5728600 0 0 0 0 0 2993900 0 2734600 6425 539 5544 39053;39054 24977 24977 195;196 340 0 MLEYLHQSK Unmodified 1147.5696 0.56957969 2005 Q9UPM8-2;Q9UPM8 AP4E1 AP-4 complex subunit epsilon-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 19.405 19.638 3 0.037636 3886 20181213_JW_Orientia_Karp_1_1 57.55 16.47 24123000 6435900 9085100 4136400 1565500 0 1767900 1132600 0 6426 2005 5545 39055;39056;39057;39058;39059;39060 24978 24978 1 MLGPEGGEGFVVK Acetyl (Protein N-term);Oxidation (M) 1376.6646 0.66460229 151 A0A024R7T3;P52597 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 1 0 1 0 By MS/MS 1 64.964 65.062 2 0.021852 28090 20181213_JW_Orientia_Karp_1_3 77.379 31.378 0 0 0 0 0 0 0 0 0 6427 151 5546 39061 24979 24979 129 1 MLGQMTDQVADLR Oxidation (M) 1492.7014 0.7013985 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B4E3Q9 VCL;HEL114 Vinculin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 2 2 2 2 1 1 1 2 48.208 48.536 2 1.6618E-07 19007 20181213_JW_Orientia_Karp_1_2 188.27 125.97 150640000 52352000 36403000 29954000 8538400 4222600 8185800 1959900 9028000 6428 19 5547 39062;39063;39064;39065;39066;39067;39068;39069;39070;39071;39072;39073;39074 24980;24981;24982;24983 24981 11;12 4 MLGQMTDQVADLR 2 Oxidation (M) 1508.6963 0.69631312 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B4E3Q9 VCL;HEL114 Vinculin yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.407 42.749 2 0.00040846 13725 20181213_JW_Orientia_Karp_3_1 150.09 77.844 58782000 0 12016000 18955000 7032800 6036800 3307300 11433000 0 6429 19 5547 39075;39076;39077;39078;39079;39080;39081;39082 24984;24985;24986;24987;24988;24989;24990;24991;24992 24991 11;12 9 MLHQKDQMILEK 2 Oxidation (M);Deamidation (NQ) 1545.7531 0.75309972 340 B1AJQ5;A8K255;E9PQL1;Q8TAV0-5;Q8TAV0-2;Q8TAV0;Q8TAV0-4;Q8TAV0-3 FAM76A Protein FAM76A yes no 0 1 2 1 By MS/MS 1 33.709 34.32 2 0.011926 8967 20181213_JW_Orientia_Karp_3_2 83.998 11.903 0 0 0 0 0 0 0 0 0 6430 340 5548 39083 24993 24993 1397 224;225 1 MLIDIISSK Acetyl (Protein N-term);Oxidation (M) 1076.5787 0.57874739 1994 Q9P2D0-3 yes yes 1 0 1 0 By MS/MS 1 42.074 42.325 2 0.011292 13647 20181213_JW_Orientia_Karp_2_3 90.37 28.262 0 0 0 0 0 0 0 0 0 6431 1994 5549 39084 24994 24994 1529 1 MLITILGTVKPNANR Unmodified 1639.9443 0.94434638 132 Q86TY5;Q6FGL0;A0A024R693;Q59FR8;P17931;G3V3R6;Q6NVH9 LGALS3;hCG_22119 Galectin;Galectin-3 yes no 0 0 0 1 By MS/MS By matching 1 1 55.395 55.494 3 0.015878 22933 20181213_JW_Orientia_Karp_1_1 89.189 49.97 5938000 1597400 0 4340600 0 0 0 0 0 6432 132 5550 39085;39086 24995 24995 1 MLKLNDHVKNNK Oxidation (M);2 Deamidation (NQ) 1470.7501 0.75006325 1368 Karp_01965 yes yes 0 2 1 2 By MS/MS 1 58.644 59.154 2 0.0092536 21267 20181213_JW_Orientia_Karp_3_2 88.177 10.079 0 0 0 0 0 0 0 0 0 6433 1368 5551 39087 24996 24996 831;832;833 949 1 MLKMTTSINR Acetyl (Protein N-term);2 Oxidation (M);Deamidation (NQ) 1268.6105 0.61045823 671 B4E053 yes yes 1 1 2 1 By matching By matching By matching By MS/MS 1 1 1 1 27.026 27.301 2 0.019694 6334 20181213_JW_Orientia_Karp_3_1 66.429 9.6191 362200000 42479000 0 196330000 0 0 17676000 105710000 0 6434 671 5552 39088;39089;39090;39091 24997 24997 231 412;413 1 MLKPQPLQQPSQPQQPPPTQQAVAR Acetyl (Protein N-term);Oxidation (M) 2850.481 0.48104604 1923 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BUF6;Q8WWM7-7 ATXN2L Ataxin-2-like protein yes no 1 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 49.034 49.295 3 0.0012202 18690 20181213_JW_Orientia_Karp_1_1 78.272 59.956 22576000 6039500 6056300 5854700 0 2859600 0 0 1765800 6435 1923 5553 39092;39093;39094;39095;39096 24998;24999;25000;25001 24998 1501 4 MLLADQGQSWK Oxidation (M) 1291.6231 0.62307182 1574 V9HWE9;P09211;A8MX94 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 43.842 44.084 2 0.00029957 15135 20181213_JW_Orientia_Karp_1_2 147.3 86.33 57464000 15929000 11826000 20978000 0 7248100 0 0 1482500 6436 1574 5554 39097;39098;39099;39100;39101 25002;25003;25004;25005 25003 1199 4 MLLMHANNR Unmodified 1098.5427 0.54265343 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 30.288 30.513 3 0.012424 8201 20181213_JW_Orientia_Karp_1_2 75.738 45.169 11085000 2294600 5288100 3256300 0 245600 0 0 0 6437 1094 5555 39102;39103;39104;39105;39106 25006;25007;25008 25007 3 MLLMHANNR 2 Oxidation (M) 1130.5325 0.53248268 1094 Karp_00243 yes yes 0 0 2 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 18.129 18.532 2 0.00079786 1964 20181213_JW_Orientia_Karp_3_2 128.57 66.787 12140000 1253800 1713500 1896500 824850 0 2418200 824990 3208500 6438 1094 5555 39107;39108;39109;39110;39111;39112;39113;39114 25009;25010;25011 25011 608;609 3 MLLMHANNRK 2 Oxidation (M);Deamidation (NQ) 1259.6115 0.61146128 1094 Karp_00243 yes yes 0 1 2 1 By matching By MS/MS By matching 1 1 1 16.501 16.684 3 0.03271 2705 20181213_JW_Orientia_Karp_1_3 46.457 7.4349 3201100 1540300 0 1411300 0 0 249510 0 0 6439 1094 5556 39115;39116;39117 25012 25012 608;609 1 MLLTFQRGPAGGENR Oxidation (M);2 Deamidation (NQ) 1663.7988 0.79880436 780 C9JWU5 SPEG yes yes 0 2 1 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 74.132 74.182 2 0.030503 30212 20181213_JW_Orientia_Karp_2_1 89.805 44.144 36958000 0 9392800 14666000 8134300 0 0 4038300 727550 6440 780 5557 39118;39119;39120;39121;39122 25013 25013 257;1642 1 MLNQILAK Oxidation (M) 945.53174 0.53173762 1344 Karp_01520 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.423 38.765 2 0.0015821 12138 20181213_JW_Orientia_Karp_1_3 163.34 67.151 74725000 30855000 16401000 12232000 0 0 0 12418000 2819200 6441 1344 5558 39123;39124;39125;39126;39127;39128 25014;25015;25016;25017;25018;25019 25016 910 6 MLNQILAK Unmodified 929.53682 0.536823 1344 Karp_01520 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 44.354 44.671 2 0.0042048 15983 20181213_JW_Orientia_Karp_1_1 138.24 49.599 70930000 31366000 19393000 13325000 1753100 0 2452100 2642000 0 6442 1344 5558 39129;39130;39131;39132;39133;39134;39135 25020;25021;25022;25023;25024 25020 5 MLNRGLGNTWTPICNTREHCK 2 Deamidation (NQ) 2559.1781 0.17808086 406 B3KMC2;B3KMD2;A8KAE0;O75717-2;O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 yes no 0 2 0 2 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 78.135 78.098 2 0.030464 32244 20181213_JW_Orientia_Karp_2_1 69.352 28.261 276170000 45349000 59041000 43208000 14123000 32929000 33283000 48232000 0 6443 406 5559 39136;39137;39138;39139;39140;39141;39142 25025 25025 155;156 1 MLPMGLIIMPGMISRALFPGLR 3 Oxidation (M) 2461.3082 0.30815574 276 A0PJK1-5 yes yes 0 0 3 1 By MS/MS 1 71.897 71.948 3 0.016897 28954 20181213_JW_Orientia_Karp_2_2 52.612 12.629 31489000 0 0 0 0 31489000 0 0 0 6444 276 5560 39143 25026 25026 196;197;198 1 MLPSTSVNSLVQGNGVLNSRDAAR Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 2545.2442 0.24422939 1032 J3KQ47;Q53HI1 UNC50 Protein unc-50 homolog yes no 1 2 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 57.257 57.616 3 0.012005 23505 20181213_JW_Orientia_Karp_1_3 52.853 20.132 151630000 47479000 24958000 30156000 21892000 17750000 0 162310 9232500 6445 1032 5561 39144;39145;39146;39147;39148;39149;39150 25027;25028;25029 25029 380;1776 565 3 MLQAGIR Oxidation (M) 803.43236 0.43235793 2038 yes no 0 0 1 0 By MS/MS By MS/MS 1 1 25.075 25.374 2 0.02362 5981 20181213_JW_Orientia_Karp_1_2 91.584 18.545 18668000 0 10813000 0 7854900 0 0 0 0 + 6446 2038 5562 39151;39152 25030;25031 25030 1557 2 MLQNFTPVYDATVYSK Unmodified 1875.9077 0.9076861 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By matching 1 1 61.826 62.001 3 0.00118 26914 20181213_JW_Orientia_Karp_1_1 110.6 72.37 7176100 5363700 1812400 0 0 0 0 0 0 6447 1318 5563 39153;39154 25032 25032 1 MLQNFTPVYDATVYSK Oxidation (M) 1891.9026 0.90260073 1318 Karp_01280 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 58.139 58.489 2 1.5299E-05 22233 20181213_JW_Orientia_Karp_2_1 159.52 96.111 16913000 0 0 0 7303600 0 9609600 0 0 6448 1318 5563 39155;39156;39157 25033;25034;25035 25034 878 3 MLSEVLR Oxidation (M) 862.45824 0.45823833 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 37.467 37.801 2 0.012834 12204 20181213_JW_Orientia_Karp_1_1 111.04 30.573 115890000 27947000 27169000 35857000 3952200 11330000 0 9638800 0 6449 274 5564 39158;39159;39160;39161;39162;39163;39164 25036;25037;25038;25039 25036 194 4 MLTLLSLNMPSNCLK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1792.8773 0.87731395 1468 L8E978 TCP11L2 yes yes 1 1 1 0 By MS/MS 1 53.812 54.063 2 0.023788 19632 20181213_JW_Orientia_Karp_2_2 65.574 6.9447 19986000 0 0 0 0 19986000 0 0 0 6450 1468 5565 39165 25040 25040 994;995 1090 1 MLTLNNDQVFPMNPPK Oxidation (M);2 Deamidation (NQ) 1875.8747 0.87467142 2001 Q9UKX3 MYH13 Myosin-13 yes yes 0 2 1 0 By MS/MS 1 50.243 50.853 2 0.031213 17218 20181213_JW_Orientia_Karp_3_2 67.93 12.209 0 0 0 0 0 0 0 0 0 6451 2001 5566 39166 25041 25041 1235;1236;1237;2106 1 MLVDDIGDVTITNDGATILK Unmodified 2103.0769 0.076936277 875 F5H726;F5H676;F5H136;E7ERF2;P17987;F5GZI8 TCP1 T-complex protein 1 subunit alpha yes no 0 0 0 0 By MS/MS 1 72.524 72.674 2 0.025459 33447 20181213_JW_Orientia_Karp_1_2 94.45 49.622 7368500 0 7368500 0 0 0 0 0 0 6452 875 5567 39167 25042 25042 1 MLVELSK Oxidation (M) 834.45209 0.45209032 349 B7Z9L0;B7Z2Z8;A8K3C3;P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 1 0 By matching By MS/MS 1 1 37.328 37.654 2 0.023417 11218 20181213_JW_Orientia_Karp_3_1 91.9 6.6352 6742500 5295300 0 0 0 0 0 1447200 0 6453 349 5568 39168;39169 25043 25043 238 1 MLVSGAGDIK Oxidation (M) 1005.5165 0.51648149 262 A1JUI8;B4DPJ8;Q59ET3;B2R9K8;A0A024RDL1;P40227;P40227-2;Q92526-2;Q92526-3;Q92526 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 35.326 35.575 2 0.030504 10526 20181213_JW_Orientia_Karp_1_3 73.985 13.395 15203000 9087000 0 5465600 649990 0 0 0 0 6454 262 5569 39170;39171;39172 25044 25044 1 MLVVLLQANR Unmodified 1155.6798 0.67979884 1573 V9HWE0;P08758;D6RBL5;D6RBE9 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 59.864 60.089 2 2.5936E-06 25100 20181213_JW_Orientia_Karp_1_3 178.08 94.331 29947000 12419000 0 8353700 1762300 7412400 0 0 0 6455 1573 5570 39173;39174;39175;39176;39177 25045;25046;25047 25046 3 MLYIALPNINK Oxidation (M) 1304.7162 0.71624393 1107 Karp_00285 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 3 2 2 63.5 63.773 2 2.1177E-06 26934 20181213_JW_Orientia_Karp_1_2 178.99 110.62 1533600000 602070000 276950000 240610000 16435000 138800000 188800000 1912300 67992000 6456 1107 5571 39178;39179;39180;39181;39182;39183;39184;39185;39186;39187;39188;39189;39190;39191;39192;39193;39194;39195 25048;25049;25050;25051;25052;25053;25054;25055;25056;25057;25058;25059;25060;25061 25050 629 13 MLYIALPNINK Unmodified 1288.7213 0.7213293 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 3 1 2 67.585 67.782 2 2.8924E-09 25765 20181213_JW_Orientia_Karp_2_2 201.49 131.86 1490500000 653540000 263350000 3106500 20661000 176530000 114180000 259120000 0 6457 1107 5571 39196;39197;39198;39199;39200;39201;39202;39203;39204;39205;39206;39207;39208;39209 25062;25063;25064;25065;25066;25067;25068;25069;25070;25071;25072;25073;25074 25070 12 MLYIALPNINK Deamidation (NQ) 1289.7053 0.70534489 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 68.377 68.653 2 0.00090417 30386 20181213_JW_Orientia_Karp_1_3 141.52 101.97 23303000 0 7378600 12361000 888290 0 0 0 2675800 6458 1107 5571 39210;39211;39212;39213 25075;25076;25077;25078;25079 25077 479;480 5 MLYIALPNINK Oxidation (M);Deamidation (NQ) 1305.7003 0.70025951 1107 Karp_00285 yes yes 0 1 1 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 65.594 65.801 2 0.0020564 28523 20181213_JW_Orientia_Karp_1_3 122.74 51.657 20240000 3869200 4023200 3450000 420530 2381800 2732300 3362600 0 6459 1107 5571 39214;39215;39216;39217;39218;39219;39220;39221 25080;25081;25082;25083 25080 479;480 629 4 MMEIMTR 3 Oxidation (M) 958.39221 0.39220895 363 H0Y9Y4;D6RG13;Q6NXR8;A8K4W0;P61247;D6R9B6;D6RAT0;B7Z3M5;H0Y8L7;D6RB09;E9PFI5 RPS3A 40S ribosomal protein S3a yes no 0 0 3 0 By MS/MS 1 21.185 21.737 2 0.035042 4229 20181213_JW_Orientia_Karp_3_1 54.611 24.805 0 0 0 0 0 0 0 0 0 6460 363 5572 39222 25084 25084 1 MMITSQDVLHSWAVPTLGLK Unmodified 2226.1541 0.15408116 1 B2YKU2;Q14XT3;H9E7F7;H9E7P8;H9E7W2;H9E7T7;X5C6M5;X5BKA4;X2CK15;X2C841;W8DFH5;W8DBX9;W8D4U9;W8D1X2;V9K571;V9JPM6;V9J3S1;V9J3C6;V9J128;U5Z9R9;U5Z487;U3LSI8;U3L556;T1SWS8;T1Q632;S4STI1;R9Y478;R9Y412;Q9B2U8;Q9B138;Q8WCW3;Q8HNR1;Q85KS0;Q7YCE6;Q7Y6N0;Q7Y6M3;Q7Y626;Q6VJJ3;Q6VJD8;Q6VIG7;Q6RQ80;Q6RNN7;Q6RKW8;Q6R0V6;Q5SB08;Q5SAP1;Q5SA98;Q5S971;Q4GVP5;Q4GQP0;Q4GHE1;Q4GCZ4;Q4GCG2;Q4GCC3;Q4F4V6;Q4EZD4;Q305H0;Q19MP7;Q15HH9;Q0Z7S0;Q0Z7J0;Q0Z7F1;Q09U41;Q06TE6;N0BMC4;L7XQ86;L7XMG0;K9M370;K7X9X2;J7FG21;I6UIH6;I6PZI4;I6PRP7;I6N6Q6;I3Q4M2;I3PYD8;I2E7Z7;H9T3W9;H9SA70;H9S868;H9RV93;H9RKS9;H9RJL3;H9RF01;H9RD12;H9RAX1;H9RA87;H9QLC8;H9QH59;H9Q9T5;H9PMX8;H9PDV6;H9MK30;H9M675;H9LMC2;H9E7D1;G9LKX8;G9LHJ5;G9LG51;G9LB98;G8JF18;G5D8Q5;G4W3U1;F2WJ84;F2WI31;F1CIN6;F1AZF2;F1AZ87;E7E4E0;E7CNQ9;E5FWC0;E5EWR3;E5EWL4;E5EWG2;E5E1A6;E5E079;E5DZN4;E2JFC4;D2IKF4;D1G421;C8YBL1;C8Y3Q5;C8Y3G4;C8XWJ6;C5H6M7;C5H6M5;C5H6M4;C5H6M3;C5H6L3;B5M7M0;B3DE06;B2XL43;B2XIR3;B2XHT9;B2WRY8;B2CB37;B1W855;A7LFA2;A7LF11;A6ZFK3;A6ZF47;A6ZEU4;A6Z3M5;A6YW54;A1Z455;A0SA07;A0S3T1;A0A068IXK4;A0A068BY99;A0A059SAH5;A0A059S242;A0A059RZV1;A0A059RX67;A0A059RVU8;A0A059RTZ6;A0A059RSL1;A0A059RR09;A0A059RQT0;A0A059RPV8;A0A059RNV8;A0A059RNF8;A0A059RLH3;A0A059RKX5;A0A059RKP1;A0A059RJF0;A0A059RIZ2;A0A059RIQ8;A0A059RIK5;A0A059RI53;A0A059RHY7;A0A059RFY4;A0A059R1T0;A0A059QVH0;A0A059QTW9;A0A059QS59;A0A059QQA7;A0A059QPT6;A0A059QPR4;A0A059QPE9;A0A059QLX8;A0A059QI72;A0A023QZ25;P00403;X2D546;X2D544;X2D537;X2D4V5;X2D4V3;X2D4U5;X2D4U2;X2D4K6;X2D4F2;X2D4E2;X2D4D6;X2D3Z8;X2D3Z7;X2D3Z6;H9E7E4;H9E7B8;H9E779;A0A059QM31;A0A059RTG7;A0A059QNV4;E2DTL8;G3CA49;K7WVJ5;S4UQ76;Q9B1F9;Q8HQB7;Q4EYL1;L7YNE0;H9T056;H9SYF8;H9RJM6;H9E792;G9LAZ4;G9C8L9;E9LAG1;E2JJS5;D7NUN3;D5M8T1;D3YPT7;D2K1G3;C9D661;B2XPS3;B0Z6W4;A7LDC6;A6Z6E8;A6YXV0;A6YWD1;A4ZKZ0;A1Z4V2;A0S0W7;A0A068BTX8;A0A068BST3;A0A068BP29;A0A059QTV7;A0A023QRX9;A0A023QCZ2;Q5XRW8;Q4GW12;J7HPF9;H9S5Y2;H9S054;H9PWQ9;F2WGV2;E9P659;E7CM18;E5E1V1;E0AF97;C5H6K7;C5H6K6;C5H6K5;B2XP28;A6ZHA9;A0S2P1;A0A059S8A4;A0A059S2S6;A0A059RUP9;A0A059RRR2;A0A059RQQ2;A0A059RQI1;A0A059RP05;A0A059RMK0;A0A059RI85;A0A059QPY9;A0A059QPU3;A0A059QPE7;A0A059RUZ1;H9STE0;X2D541;X2D4T8;Q4F6A2;B2XHF9 COX2;COII;MT-CO2;cox2 Cytochrome c oxidase subunit 2 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 71.741 71.84 3 0.036065 32811 20181213_JW_Orientia_Karp_1_2 49.655 17.353 24698000 8924800 6666000 8484400 622520 0 0 0 0 6461 1 5573 39223;39224;39225;39226 25085 25085 1 MMLDDIVSR Oxidation (M) 1094.51 0.5100159 1930;645 B4DV73;Q92945;M0R0I5;M0QYH3;M0QXW7 KHSRP Far upstream element-binding protein 2 no no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 50.931 51.256 2 0.014476 18229 20181213_JW_Orientia_Karp_2_2 85.731 35.027 24850000 4297000 7321700 0 5334600 2758900 3625300 1512000 0 6462 645;1930 5574 39227;39228;39229;39230;39231;39232 25086;25087;25088;25089 25088 399 4 MMLGTEGGEGFVVK Acetyl (Protein N-term);Oxidation (M) 1511.7 0.70000151 888 E9PCY7;G8JLB6;P31943;E5RGV0;D6RIU0;D6RBM0;E7EQJ0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;E7EN40;D6RDU3;D6RJ04;D6RIH9;E5RJ94;D6R9D3;D6RF17;D6RDL0 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 1 0 1 0 By matching By MS/MS 1 1 69.052 69.101 2 0.0013595 30731 20181213_JW_Orientia_Karp_1_3 123.01 85.452 8242700 4919300 0 3323500 0 0 0 0 0 6463 888 5575 39233;39234 25090 25090 509 1 MMLLNQDLMGALALNFFHK Oxidation (M);Deamidation (NQ) 2223.089 0.089038063 1908 Q8N7Z9 yes yes 0 1 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 71.877 71.955 3 0.024235 29324 20181213_JW_Orientia_Karp_2_3 62.469 11.642 289960000 29422000 12943000 13833000 18981000 86542000 38752000 89487000 0 6464 1908 5576 39235;39236;39237;39238;39239;39240;39241 25091;25092 25092 1195 1496;1497;1498 2 MMLRMHNLHGTK Oxidation (M);Deamidation (NQ) 1484.705 0.70504409 1477 M0QX71 GRWD1 yes yes 0 1 1 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 61.567 61.854 2 0.020187 26157 20181213_JW_Orientia_Karp_1_3 95.502 56.483 456530000 0 43459000 181290000 18429000 0 213350000 0 0 6465 1477 5577 39242;39243;39244;39245 25093;25094 25094 1003 1096;1097 1 MMNGGHYTYSENR 2 Oxidation (M);Deamidation (NQ) 1591.6031 0.60314102 1956 V9HWC2;Q99497;K7ELW0 HEL-S-67p;PARK7 Protein deglycase DJ-1 yes no 0 1 2 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 23.767 24.079 3 0.008615 5237 20181213_JW_Orientia_Karp_3_1 93.345 51.946 5845300 0 2229900 1009100 0 0 969020 1637300 0 6466 1956 5578 39246;39247;39248;39249 25095;25096 25096 1209 1515;1516 2 MMNPISAEAALTR 2 Oxidation (M) 1435.6799 0.67993477 1190 Karp_00705 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 46.029 46.292 2 1.5814E-07 14641 20181213_JW_Orientia_Karp_3_2 186.76 123.69 98785000 19005000 18024000 30177000 12572000 7960900 4507500 0 6539600 6467 1190 5579 39250;39251;39252;39253;39254;39255;39256;39257 25097;25098;25099;25100;25101;25102;25103 25103 755;756 7 MMNPISAEAALTR Unmodified 1403.6901 0.69010553 1190 Karp_00705 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 55.952 56.405 2 0.0074125 23471 20181213_JW_Orientia_Karp_1_1 113.07 57.089 25643000 0 11403000 13225000 0 0 0 592490 422780 6468 1190 5579 39258;39259;39260;39261;39262 25104;25105;25106 25104 3 MMNPISAEAALTR Oxidation (M) 1419.685 0.68502015 1190 Karp_00705 yes yes 0 0 1 0 By MS/MS By matching 1 1 50.519 50.693 2 0.0070958 19036 20181213_JW_Orientia_Karp_1_3 101.39 54.984 10957000 0 0 8807900 0 2149500 0 0 0 6469 1190 5579 39263;39264 25107 25107 755;756 1 MMPTPVILLK Acetyl (Protein N-term);Oxidation (M) 1199.6658 0.66578826 1832 Q6IBT3;Q53HV2;Q99832;F8WBP8 CCT7 T-complex protein 1 subunit eta yes no 1 0 1 0 By MS/MS By matching 1 1 75.667 75.665 2 0.041412 35422 20181213_JW_Orientia_Karp_1_1 60.91 34.468 19241000 11324000 0 7917800 0 0 0 0 0 6470 1832 5580 39265;39266 25108 25108 1462;1463 1 MMPTPVILLK Acetyl (Protein N-term);2 Oxidation (M) 1215.6607 0.66070288 1832 Q6IBT3;Q53HV2;Q99832;F8WBP8 CCT7 T-complex protein 1 subunit eta yes no 1 0 2 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 70.768 70.901 2 0.025548 25576 20181213_JW_Orientia_Karp_3_1 57.598 26.177 6642800 0 0 2793200 0 0 890350 2959200 0 6471 1832 5580 39267;39268;39269;39270 25109;25110;25111;25112 25112 1462;1463 4 MMQNTVIVNGVAMASR Acetyl (Protein N-term);Deamidation (NQ) 1763.8368 0.83684612 537 B3KUI8 yes yes 1 1 0 0 By MS/MS 1 43.61 43.762 2 0.035759 13934 20181213_JW_Orientia_Karp_2_2 60.08 14.201 0 0 0 0 0 0 0 0 0 6472 537 5581 39271 25113 25113 1506 1 MMSNEITKKQQIAEK 2 Oxidation (M);3 Deamidation (NQ) 1812.8485 0.84851625 1879 Q6ZR08-3 yes yes 0 3 2 2 By MS/MS 1 74.037 74.087 2 0.035986 27477 20181213_JW_Orientia_Karp_3_1 47.288 16.102 10194000 0 0 0 0 0 0 10194000 0 6473 1879 5582 39272 25114 25114 2021;2022 1 MMSNMLGK 3 Oxidation (M) 958.39221 0.39220895 1158 Karp_00578 yes yes 0 0 3 0 By MS/MS 1 17.332 17.332 2 0.023219 3168 20181213_JW_Orientia_Karp_1_1 66.429 37.28 0 0 0 0 0 0 0 0 0 6474 1158 5583 39273 25115 25115 688;689;690 1 MMVAGFK 2 Oxidation (M) 814.37173 0.3717315 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 2 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 28.225 28.516 2 0.036037 7287 20181213_JW_Orientia_Karp_1_2 74.832 39.726 8789800 3111500 2737200 1508600 0 0 412040 1020500 0 6475 595 5584 39274;39275;39276;39277;39278 25116 25116 1 MMWSNFFLQEENR Acetyl (Protein N-term);Deamidation (NQ) 1773.7491 0.74907697 314 A6NP74;A6NFR2;Q9BXT2 CACNG6 Voltage-dependent calcium channel gamma subunit;Voltage-dependent calcium channel gamma-6 subunit yes no 1 1 0 0 By MS/MS 1 26.562 26.562 2 0.021712 6878 20181213_JW_Orientia_Karp_1_1 72.321 14.435 0 0 0 0 0 0 0 0 0 6476 314 5585 39279 25117 25117 121 1 MNAFSGVMMLQLLEK 2 Oxidation (M);Deamidation (NQ) 1743.8246 0.8245501 897 J3KP84;E9PPG7;E9PRU6;F2Z2D6;E9PJS8;E9PLY6;H0Y5L2;Q9NTX5-5;Q9NTX5-6;Q9NTX5-2;Q9NTX5 ECHDC1 Ethylmalonyl-CoA decarboxylase yes no 0 1 2 0 By matching By matching By matching By MS/MS 1 1 1 1 38.121 38.459 4 0.027861 11583 20181213_JW_Orientia_Karp_3_1 49.149 9.1879 14327000 4585900 0 0 136950 745420 0 8858300 0 6477 897 5586 39280;39281;39282;39283 25118 25118 1708 512;513 1 MNALNGHENNVVK Oxidation (M);2 Deamidation (NQ) 1456.6616 0.66164217 1375 Karp_02111 yes yes 0 2 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 29.506 29.893 2;3 0.010677 7898 20181213_JW_Orientia_Karp_1_2 79.492 15.371 36941000 9393400 0 736350 7873900 2283300 362680 14000000 2291700 6478 1375 5587 39284;39285;39286;39287;39288;39289;39290;39291 25119;25120;25121;25122 25120 864;865;866 967 4 MNALNGHENNVVK 2 Deamidation (NQ) 1440.6667 0.66672755 1375 Karp_02111 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.492 33.865 3 0.008739 9762 20181213_JW_Orientia_Karp_1_2 87.831 46.448 102130000 32688000 25709000 25195000 8963600 2979600 0 3911500 2679000 6479 1375 5587 39292;39293;39294;39295;39296;39297;39298 25123;25124;25125;25126;25127;25128 25124 864;865;866 6 MNALNGHENNVVK Oxidation (M);Deamidation (NQ) 1455.6776 0.67762659 1375 Karp_02111 yes yes 0 1 1 0 By MS/MS By MS/MS 1 1 27.826 28.1 2 0.01146 7045 20181213_JW_Orientia_Karp_1_3 102.05 43.348 5466800 0 1726300 3740500 0 0 0 0 0 6480 1375 5587 39299;39300 25129;25130 25130 864;865;866 967 2 MNALNGHENNVVK Deamidation (NQ) 1439.6827 0.68271197 1375 Karp_02111 yes yes 0 1 0 0 By matching By MS/MS By matching By matching 1 1 1 1 31.921 32.121 3 0.017237 8887 20181213_JW_Orientia_Karp_1_2 90.697 40.344 34517000 19953000 8582400 5053100 0 929050 0 0 0 6481 1375 5587 39301;39302;39303;39304 25131 25131 864;865;866 1 MNCNTQSQTRALPR Acetyl (Protein N-term);3 Deamidation (NQ) 1720.7509 0.75086789 1914 Q8NI86 OK/SW-cl.24 yes yes 1 3 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 63.684 63.851 2 0.028311 27367 20181213_JW_Orientia_Karp_1_3 52.579 8.6209 50054000 19210000 7089100 8403900 1158000 9633000 4560400 0 0 6482 1914 5588 39305;39306;39307;39308;39309;39310 25132;25133 25133 1196;1197;2049;2050 2 MNDFMRMQILK 3 Oxidation (M) 1473.6778 0.67782628 838 D3DUZ3;Q16666-2;Q16666;Q16666-6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 3 1 By MS/MS By matching By matching 1 1 1 66.106 66.222 2 0.039071 29455 20181213_JW_Orientia_Karp_1_1 43.083 9.1613 7356200 5243100 0 1655800 457290 0 0 0 0 6483 838 5589 39311;39312;39313 25134 25134 0 MNDLNANDLAAATK Oxidation (M) 1476.6879 0.68785692 1174 Karp_00628 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.411 43.731 2 1.2029E-25 14855 20181213_JW_Orientia_Karp_1_2 237.07 158.52 139780000 22619000 27577000 27194000 9189800 31925000 7463000 10684000 3124600 6484 1174 5590 39314;39315;39316;39317;39318;39319;39320;39321 25135;25136;25137;25138;25139;25140;25141;25142 25136 732 8 MNDLNANDLAAATK Oxidation (M);Deamidation (NQ) 1477.6719 0.67187251 1174 Karp_00628 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 47.397 47.695 2 7.5298E-05 17818 20181213_JW_Orientia_Karp_1_3 164.13 105.54 115440000 25766000 23175000 30213000 16062000 3912600 10094000 0 6220000 6485 1174 5590 39322;39323;39324;39325;39326;39327;39328;39329;39330;39331;39332;39333;39334;39335;39336 25143;25144;25145;25146;25147;25148;25149;25150;25151;25152;25153;25154 25148 578;579 732 12 MNDLNANDLAAATK Deamidation (NQ) 1461.677 0.67695789 1174 Karp_00628 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching 2 2 1 1 2 50.19 50.523 2 0.00045251 18556 20181213_JW_Orientia_Karp_1_2 154.1 97.47 64594000 23801000 25098000 7827500 5310900 0 0 0 2557100 6486 1174 5590 39337;39338;39339;39340;39341;39342;39343;39344 25155;25156;25157 25155 578;579 3 MNDSLFVSLDR Oxidation (M);Deamidation (NQ) 1312.5969 0.59691665 951 G3V257;G3V3U9;Q8N1H7 C14orf39;SIX6OS1 Protein SIX6OS1 yes no 0 1 1 0 By matching By matching By MS/MS By matching 1 1 1 1 16.013 16.238 2 0.02886 2670 20181213_JW_Orientia_Karp_1_3 70.908 29.482 9935100 6856500 904410 2111000 0 0 0 63231 0 6487 951 5591 39345;39346;39347;39348 25158 25158 332 0 MNEMLTLVGQLR 2 Oxidation (M) 1435.7163 0.71632028 1100 Karp_00268 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 53.353 53.711 2;3 2.7908E-40 21605 20181213_JW_Orientia_Karp_1_1 261.35 169.3 211280000 56358000 37453000 43040000 22128000 27218000 21350000 1199100 2532100 6488 1100 5592 39349;39350;39351;39352;39353;39354;39355;39356;39357 25159;25160;25161;25162;25163;25164;25165 25159 618;619 6 MNEMLTLVGQLR Oxidation (M) 1419.7214 0.72140566 1100 Karp_00268 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 2 59.091 59.4 2 2.2429E-64 24501 20181213_JW_Orientia_Karp_2_2 286.86 205.94 290570000 95513000 26629000 78911000 16449000 41066000 22684000 2809500 6510600 6489 1100 5592 39358;39359;39360;39361;39362;39363;39364;39365;39366;39367;39368;39369;39370;39371 25166;25167;25168;25169;25170;25171;25172;25173;25174;25175;25176;25177;25178;25179;25180 25174 618;619 15 MNEMLTLVGQLR Oxidation (M);Deamidation (NQ) 1420.7054 0.70542124 1100 Karp_00268 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 3 2 2 1 2 3 3 64.442 64.734 2 0.00052634 29420 20181213_JW_Orientia_Karp_1_1 154.15 101.89 36084000 8423200 6217100 2698100 3061800 2691300 3296000 6387300 3308800 6490 1100 5592 39372;39373;39374;39375;39376;39377;39378;39379;39380;39381;39382;39383;39384;39385;39386;39387;39388 25181;25182;25183;25184;25185 25181 455 618;619 5 MNEMLTLVGQLR Unmodified 1403.7265 0.72649104 1100 Karp_00268 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 65.917 66.127 2 1.789E-30 29060 20181213_JW_Orientia_Karp_1_2 272.94 182.23 128540000 49850000 25425000 29927000 2599200 12309000 0 0 8430100 6491 1100 5592 39389;39390;39391;39392;39393;39394;39395;39396;39397 25186;25187;25188;25189;25190;25191;25192 25186 7 MNEMLTLVGQLR 2 Oxidation (M);Deamidation (NQ) 1436.7003 0.70033587 1100 Karp_00268 yes yes 0 1 2 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 56.414 56.823 2 0.0022088 21410 20181213_JW_Orientia_Karp_2_3 115.29 57.939 20874000 0 4676900 1963000 4479100 5292500 3834600 56496 571860 6492 1100 5592 39398;39399;39400;39401;39402;39403;39404 25193;25194 25194 455 618;619 2 MNEWTNTGR Acetyl (Protein N-term);Deamidation (NQ) 1150.4713 0.47132221 993 H3BQI1 DYNLRB2 yes yes 1 1 0 0 By MS/MS 1 21.696 22.506 2 0.0062785 3704 20181213_JW_Orientia_Karp_3_2 96.492 47.93 0 0 0 0 0 0 0 0 0 6493 993 5593 39405 25195 25195 353 1 MNGALQVLDADLK Oxidation (M);Deamidation (NQ) 1403.6966 0.6966307 1456 Karp_02593 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 1 4 61.631 61.922 2 6.0356E-07 26179 20181213_JW_Orientia_Karp_1_1 180.24 87.185 218250000 54149000 21038000 63015000 7458300 37800000 26585000 1560800 6648200 6494 1456 5594 39406;39407;39408;39409;39410;39411;39412;39413;39414;39415;39416;39417;39418;39419;39420;39421;39422;39423 25196;25197;25198;25199;25200;25201;25202;25203;25204;25205;25206;25207;25208;25209 25196 986;1881 1069 14 MNGALQVLDADLK Deamidation (NQ) 1387.7017 0.70171607 1456 Karp_02593 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 66.387 66.559 2 5.4155E-07 29625 20181213_JW_Orientia_Karp_1_1 184.87 14.877 95026000 28644000 47012000 0 0 11256000 6551800 0 1562600 6495 1456 5594 39424;39425;39426;39427;39428 25210;25211;25212;25213 25210 986;1881 4 MNHEELINSLTK Oxidation (M);Deamidation (NQ) 1444.6868 0.68679429 1456 Karp_02593 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 3 1 3 1 39.436 39.763 2;3 0.00089395 13514 20181213_JW_Orientia_Karp_2_1 125.36 73.747 241450000 57030000 89713000 47427000 11013000 2226500 2852500 30816000 376150 6496 1456 5595 39429;39430;39431;39432;39433;39434;39435;39436;39437;39438;39439;39440;39441;39442;39443;39444;39445;39446 25214;25215;25216;25217;25218;25219;25220;25221;25222;25223 25219 987 1070 10 MNHEELINSLTK Oxidation (M) 1443.7028 0.70277871 1456 Karp_02593 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 38.561 38.88 2;3 1.6937E-08 12107 20181213_JW_Orientia_Karp_1_3 194.39 134.98 741720000 214900000 289730000 113830000 44836000 13907000 20195000 44329000 0 6497 1456 5595 39447;39448;39449;39450;39451;39452;39453;39454;39455;39456;39457;39458;39459;39460 25224;25225;25226;25227;25228;25229;25230;25231 25227 1070 7 MNHEELINSLTK Unmodified 1427.7079 0.70786408 1456 Karp_02593 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 41.8 42.102 2;3 0.00010229 13969 20181213_JW_Orientia_Karp_1_2 196.27 115.43 752140000 297720000 238850000 117280000 0 18973000 17748000 61141000 434100 6498 1456 5595 39461;39462;39463;39464;39465;39466;39467;39468 25232;25233;25234;25235;25236;25237;25238 25233 7 MNHEELINSLTK Deamidation (NQ) 1428.6919 0.69187967 1456 Karp_02593 yes yes 0 1 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 2 3 2 1 2 1 42.663 43.009 2;3 0.0097742 14978 20181213_JW_Orientia_Karp_3_1 107.34 49.485 297750000 77670000 71788000 116000000 10834000 0 0 18277000 3175100 6499 1456 5595 39469;39470;39471;39472;39473;39474;39475;39476;39477;39478;39479 25239;25240;25241 25241 987 3 MNIHEYQAK Oxidation (M) 1148.5284 0.52844316 1121 Karp_00319 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 3 18.978 19.355 2;3 0.00047408 3641 20181213_JW_Orientia_Karp_1_3 155.42 85.79 96795000 15926000 22954000 19052000 11835000 1809800 8613900 7524200 9079300 6500 1121 5596 39480;39481;39482;39483;39484;39485;39486;39487;39488;39489;39490;39491;39492;39493;39494;39495;39496;39497 25242;25243;25244;25245;25246;25247;25248;25249;25250;25251;25252 25244 648 10 MNIHEYQAK Unmodified 1132.5335 0.53352853 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 26.002 26.304 3 0.01274 5254 20181213_JW_Orientia_Karp_2_2 96.948 48.524 210980000 29012000 118440000 21159000 12775000 12708000 6262900 0 10617000 6501 1121 5596 39498;39499;39500;39501;39502;39503;39504 25253;25254;25255;25256;25257;25258 25257 6 MNIIISGSPQYNSVK Oxidation (M) 1665.8396 0.83960654 1299 Karp_01192 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.06 47.493 2 1.2545E-05 16813 20181213_JW_Orientia_Karp_1_3 163.45 105.08 22057000 0 8012100 6257300 1428500 0 2205500 1128800 3024600 6502 1299 5597 39505;39506;39507;39508;39509;39510;39511 25259;25260;25261;25262;25263;25264;25265;25266 25262 858 8 MNIIISGSPQYNSVK Oxidation (M);Deamidation (NQ) 1666.8236 0.82362212 1299 Karp_01192 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 49.441 49.62 2 0.0030623 18905 20181213_JW_Orientia_Karp_1_1 106.13 50.704 20011000 3180400 6178200 8616200 0 2036500 0 0 0 6503 1299 5597 39512;39513;39514;39515;39516 25267;25268;25269 25267 725 858 2 MNIIISGSPQYNSVK Unmodified 1649.8447 0.84469192 1299 Karp_01192 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.415 52.76 2 0.0030346 18996 20181213_JW_Orientia_Karp_2_1 146.67 69.549 51298000 15525000 14119000 11241000 2287800 3024300 1735100 2990800 375270 6504 1299 5597 39517;39518;39519;39520;39521;39522;39523;39524 25270 25270 0 MNKLNFHNNR Oxidation (M);Deamidation (NQ) 1303.6092 0.60915309 499 G3V517;B2RE19;Q96NE9-2;Q96NE9 FRMD6 FERM domain-containing protein 6 yes no 0 1 1 1 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 59.524 59.799 2 0.01226 24904 20181213_JW_Orientia_Karp_1_3 98.997 12.098 75748000 21694000 7324600 32091000 0 0 0 14638000 0 6505 499 5598 39525;39526;39527;39528 25271;25272;25273 25272 184 324 3 MNKMVTSEEEMK 2 Oxidation (M);Deamidation (NQ) 1488.6146 0.61461691 1723 P61576 HERV-K104 Endogenous retrovirus group K member 104 Rec protein yes yes 0 1 2 1 By matching By MS/MS By matching By matching 1 1 1 1 48.075 48.401 2 0.02339 16560 20181213_JW_Orientia_Karp_2_1 63.426 6.7942 10841000 0 5308000 0 3007400 1165900 1360000 0 0 6506 1723 5599 39529;39530;39531;39532 25274 25274 1135 1350;1351 0 MNLGTGNNLIILK Acetyl (Protein N-term);2 Deamidation (NQ) 1443.7643 0.76431633 1095 Karp_00244 yes yes 1 2 0 0 By MS/MS 1 59.237 59.747 2 0.0043172 21658 20181213_JW_Orientia_Karp_3_2 96.665 22.289 0 0 0 0 0 0 0 0 0 6507 1095 5600 39533 25275 25275 449;450 1 MNLIKQFEQEQIK Oxidation (M);3 Deamidation (NQ) 1666.8124 0.81238874 1389 Karp_02137 yes yes 0 3 1 1 By MS/MS By matching 1 1 56.864 57.464 2 0.038496 21463 20181213_JW_Orientia_Karp_2_1 42.743 11.675 122590000 0 0 0 121810000 0 0 783990 0 6508 1389 5601 39534;39535 25276 25276 874;1861;1862 985 0 MNLIKQFEQEQIKK Oxidation (M);Deamidation (NQ) 1792.9393 0.93932058 1389 Karp_02137 yes yes 0 1 1 2 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 74.667 74.699 2 0.020051 27834 20181213_JW_Orientia_Karp_3_1 114.4 44.729 62861000 21041000 10028000 12521000 396180 5702700 1978500 10042000 1151600 6509 1389 5602 39536;39537;39538;39539;39540;39541;39542;39543 25277;25278;25279;25280 25280 874;1861;1862 985 4 MNLLPNIESPVTRQEK Acetyl (Protein N-term);Deamidation (NQ) 1910.9772 0.97716265 905 E9PM69;P17980 PSMC3 26S protease regulatory subunit 6A yes no 1 1 0 1 By matching By matching By MS/MS By matching 1 1 1 1 74.522 74.561 3 0.018496 34325 20181213_JW_Orientia_Karp_1_3 64.244 9.4322 56067000 16141000 12436000 24403000 0 0 0 0 3087300 6510 905 5603 39544;39545;39546;39547 25281 25281 322 1 MNLQAQPKAQNKR Oxidation (M);3 Deamidation (NQ) 1544.7617 0.76169057 131 C9JYU7;A0PJD3;A0A024R689;Q6PJG2 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 0 3 1 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 48.407 48.752 2 0.011589 16228 20181213_JW_Orientia_Karp_3_2 83.998 22.234 114650000 25204000 32144000 21385000 12311000 8858400 9340700 695360 4716700 6511 131 5604 39548;39549;39550;39551;39552;39553;39554;39555 25282 25282 1300;1301;1302 111 0 MNLSAIQDR Unmodified 1046.5179 0.51787847 177 B2R7U5;A0A024R977;Q96BM9;B4DQT8;A0A024R2D4;B4E1J8;Q9NVJ2 ARL8A;ARL8B ADP-ribosylation factor-like protein 8A;ADP-ribosylation factor-like protein 8B yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 41.781 41.964 2 0.022133 13973 20181213_JW_Orientia_Karp_1_2 82.831 16.209 53342000 22143000 16170000 15028000 0 0 0 0 0 6512 177 5605 39556;39557;39558 25283 25283 1 MNPEDIALVQEVAELIQNR Unmodified 2181.11 0.10996774 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 1 76.958 76.951 2;3 7.8156E-24 36327 20181213_JW_Orientia_Karp_1_2 262.83 200.75 350700000 122510000 59830000 65641000 22774000 29070000 15217000 34193000 1459400 6513 1126 5606 39559;39560;39561;39562;39563;39564;39565;39566;39567;39568;39569;39570;39571;39572;39573 25284;25285;25286;25287;25288;25289;25290;25291 25285 7 MNPEDIALVQEVAELIQNR Oxidation (M) 2197.1049 0.10488236 1126 Karp_00329 yes yes 0 0 1 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 1 76.171 76.164 2;3 3.4887E-55 31193 20181213_JW_Orientia_Karp_2_1 268.18 184 697530000 106630000 128250000 181670000 46395000 90776000 44382000 95876000 3541800 6514 1126 5606 39574;39575;39576;39577;39578;39579;39580;39581;39582;39583;39584;39585;39586;39587;39588 25292;25293;25294;25295;25296;25297 25293 659 6 MNPEYDYLFK Acetyl (Protein N-term);Oxidation (M) 1376.5959 0.59585402 902 E9PLD0;Q6FIG4;Q9H0U4;Q9H1C9 RAB1B Ras-related protein Rab-1B yes no 1 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 70.245 70.355 2 0.020068 28119 20181213_JW_Orientia_Karp_2_2 75.652 49.844 21700000 6655500 0 5245400 0 3427400 1799200 4572500 0 6515 902 5607 39589;39590;39591;39592;39593 25298 25298 516 1 MNPQSAFFQGK Unmodified 1253.5863 0.58629239 464 B2R761;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 46.832 47.14 2 0.0016256 17262 20181213_JW_Orientia_Karp_1_1 120.27 76.638 83900000 35338000 25955000 0 8075300 6962300 7116000 453090 0 6516 464 5608 39594;39595;39596;39597;39598;39599 25299;25300 25299 2 MNQPGGAAAPQADGASAAGR Acetyl (Protein N-term);2 Deamidation (NQ) 1840.801 0.8009892 438 B1ALC2;B5MDS3;Q5T7W0-3;Q5T7W0-2;Q5T7W0-4;Q5T7W0 ZNF618 Zinc finger protein 618 yes no 1 2 0 0 By matching By matching By matching By MS/MS 1 1 1 1 46.411 46.774 2 0.039201 15774 20181213_JW_Orientia_Karp_3_1 44.457 7.3126 21195000 0 0 10356000 4360900 5084500 0 1393300 0 6517 438 5609 39600;39601;39602;39603 25301 25301 1448 1 MNSMDRHIQQTNDR Acetyl (Protein N-term);2 Deamidation (NQ) 1788.7519 0.75193052 20 Q149N7;A0JLS3;A0A024QZN6;Q9ULJ6 ZMIZ1;RAI17 Zinc finger MIZ domain-containing protein 1 yes no 1 2 0 1 By MS/MS 1 77.038 77.087 3 0.041804 36432 20181213_JW_Orientia_Karp_1_2 41.092 21.338 0 0 0 0 0 0 0 0 0 6518 20 5610 39604 25302 25302 1256 1 MNSQPQTRSPFFQR Oxidation (M);3 Deamidation (NQ) 1741.773 0.77298354 439 B1AN91;B4DXR2;O43432-4;O43432 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 0 3 1 1 By matching By MS/MS By matching 1 1 1 72.587 72.706 2 0.037093 32917 20181213_JW_Orientia_Karp_1_3 44.847 10.346 103220000 0 45845000 47078000 0 0 0 0 10294000 6519 439 5611 39605;39606;39607 25303 25303 1449;1450 0 MNTALSSAIK Oxidation (M) 1050.5379 0.53794521 1350 Karp_01526 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 34 34.36 2 0.0004314 8919 20181213_JW_Orientia_Karp_2_2 133.99 42.367 34736000 13400000 5515800 0 4480700 4835800 0 6504400 0 6520 1350 5612 39608;39609;39610;39611;39612 25304;25305;25306;25307 25306 924 4 MNTPSQPRQHFYPSR Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1904.8475 0.84754546 877 E7EUU4;Q04637-3;C9JIH5;C9JHW9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 1 2 1 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 60.948 61.283 2 0.01569 26340 20181213_JW_Orientia_Karp_1_2 63.624 11.048 127320000 0 24664000 15226000 22798000 28167000 23141000 0 13325000 6521 877 5613 39613;39614;39615;39616;39617;39618 25308 25308 1692;1693 499 1 MNVDHEVNLLVEEIHR Acetyl (Protein N-term);Oxidation (M) 2003.9735 0.97347426 1847 Q5SZC9;Q9P1F3 ABRACL Costars family protein ABRACL yes no 1 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.603 62.861 3 7.6926E-08 24249 20181213_JW_Orientia_Karp_2_2 178.85 135.06 161690000 33902000 21219000 16029000 2324800 52566000 27216000 0 8436700 6522 1847 5614 39619;39620;39621;39622;39623;39624;39625 25309;25310;25311;25312;25313;25314;25315 25313 1467 6 MNVDHEVNLLVEEIHR Acetyl (Protein N-term) 1987.9786 0.97855964 1847 Q5SZC9;Q9P1F3 ABRACL Costars family protein ABRACL yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.193 68.401 3 3.5539E-14 30517 20181213_JW_Orientia_Karp_1_2 207.66 143.14 162580000 39187000 40919000 14919000 10880000 20288000 13644000 8417800 14328000 6523 1847 5614 39626;39627;39628;39629;39630;39631;39632;39633 25316;25317;25318;25319;25320;25321;25322;25323;25324 25317 9 MNVGQILETHLGWAGVNLGR Unmodified 2164.1211 0.12114155 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 70.339 70.456 3 4.5508E-05 31994 20181213_JW_Orientia_Karp_1_2 128.79 93.577 249550000 66227000 42873000 30835000 0 36068000 14662000 58888000 0 6524 1170 5615 39634;39635;39636;39637;39638;39639 25325;25326;25327;25328 25326 4 MNVGQILETHLGWAGVNLGR Oxidation (M) 2180.1161 0.11605617 1170 Karp_00624 yes yes 0 0 1 0 By matching By MS/MS By MS/MS 1 1 1 65.454 65.638 3 0.012782 25840 20181213_JW_Orientia_Karp_2_3 79.332 53.745 48175000 0 20008000 0 0 19465000 8702000 0 0 6525 1170 5615 39640;39641;39642 25329;25330 25330 717 2 MNVLADALK Oxidation (M) 989.52157 0.52156686 388 B2R4W8;A8K7H3;P62244;H3BV27;H3BT37;I3L303;I3L3P7;I3L246;H3BN98 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 46.776 47.049 2 0.00067928 16924 20181213_JW_Orientia_Karp_1_2 135.71 39.802 82649000 26218000 26353000 12375000 4234000 4077800 6124800 0 3267000 6526 388 5616 39643;39644;39645;39646;39647;39648;39649 25331;25332;25333;25334 25332 271 4 MNVLADALK Unmodified 973.52665 0.52665224 388 B2R4W8;A8K7H3;P62244;H3BV27;H3BT37;I3L303;I3L3P7;I3L246;H3BN98 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 52.506 52.696 2 0.003935 20634 20181213_JW_Orientia_Karp_1_2 109.29 39.907 93707000 30142000 30046000 23867000 0 3847300 5804300 0 0 6527 388 5616 39650;39651;39652;39653;39654 25335;25336;25337 25336 3 MNVSPDVNYEELAR Oxidation (M) 1651.7512 0.75118546 905 E9PM69;P17980;R4GNH3;A8K781 PSMC3 26S protease regulatory subunit 6A yes no 0 0 1 0 By matching By MS/MS 1 1 49.836 50.011 2 0.038357 18762 20181213_JW_Orientia_Karp_1_2 69.261 7.6677 11366000 3577800 7788400 0 0 0 0 0 0 6528 905 5617 39655;39656 25338 25338 1 MNYEKLSR Oxidation (M);Deamidation (NQ) 1056.491 0.49099502 382 Q6FG54;Q5U0M2;A8K725;P14921-4;P14921-2;P14921;P15036;P14921-3 ETS1;ETS2 Protein C-ets-1;Protein C-ets-2 yes no 0 1 1 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 58.911 59.161 2 0.014836 24490 20181213_JW_Orientia_Karp_1_3 109.01 27.822 51376000 12917000 4249700 8889800 1607000 10349000 13364000 0 0 6529 382 5618 39657;39658;39659;39660;39661;39662 25339;25340;25341;25342 25340 147 268 4 MNYSTHLFQMPLFLK Oxidation (M);Deamidation (NQ) 1885.9107 0.91066299 1898 Q86YA3-7 yes yes 0 1 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 42.379 42.699 3 0.040761 14812 20181213_JW_Orientia_Karp_1_1 57.804 24.503 61137000 16897000 25768000 0 5252300 6674300 0 6544600 0 6530 1898 5619 39663;39664;39665;39666;39667 25343 25343 2036 0 MPCTEDYLSLILNR Oxidation (M) 1739.8222 0.82224192 792 CON__P02769 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 2 72.095 72.21 2;3 5.9596E-46 29443 20181213_JW_Orientia_Karp_2_3 262.07 208.57 677610000 46902000 27314000 28806000 63176000 101670000 44759000 318330000 46657000 + 6531 792 5620 39668;39669;39670;39671;39672;39673;39674;39675;39676;39677;39678 25344;25345;25346;25347;25348;25349;25350;25351;25352 25349 457 9 MPCTEDYLSLILNR Unmodified 1723.8273 0.82732729 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 73.285 73.329 2 7.8241E-59 29640 20181213_JW_Orientia_Karp_3_2 277.96 165.11 586430000 80284000 41577000 29053000 60538000 63465000 39565000 159700000 112250000 + 6532 792 5620 39679;39680;39681;39682;39683;39684;39685;39686 25353;25354;25355;25356;25357;25358;25359;25360 25360 8 MPDGLNSFIGEK Unmodified 1306.6227 0.62273747 1429 Karp_02383 yes yes 0 0 0 0 By MS/MS 1 57.585 57.934 2 0.031117 24009 20181213_JW_Orientia_Karp_1_2 79.036 40.875 20825000 0 20825000 0 0 0 0 0 0 6533 1429 5621 39687 25361 25361 1 MPDMHVNMPK 3 Oxidation (M) 1246.5144 0.51444935 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 3 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 18.933 19.325 3 0.029317 3536 20181213_JW_Orientia_Karp_1_2 50.034 17.999 4237400 0 1370500 1093500 0 64022 1383300 0 326070 6534 1782 5622 39688;39689;39690;39691;39692 25362;25363 25362 2 MPDVDISVPK Oxidation (M) 1115.5533 0.55326092 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 46.754 47.081 2 0.00038592 16066 20181213_JW_Orientia_Karp_2_1 135.71 83.456 14261000 0 0 5194100 3182100 3026800 0 0 2858300 6535 1782 5623 39693;39694;39695;39696 25364;25365 25364 1422 2 MPEMHFK Unmodified 918.40918 0.40917964 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 34.552 34.896 2 0.03998 10796 20181213_JW_Orientia_Karp_1_1 83.377 33.787 35983000 11052000 8564800 11756000 0 1108800 0 2231500 1269700 6536 1782 5624 39697;39698;39699;39700;39701;39702 25366 25366 1 MPEMHFK 2 Oxidation (M) 950.39901 0.39900889 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 2 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 2 2 15.341 15.777 2 0.010713 2587 20181213_JW_Orientia_Karp_3_1 108.98 66.264 75459000 8182800 5369600 5976600 4467700 4538700 1683700 1954700 43285000 6537 1782 5624 39703;39704;39705;39706;39707;39708;39709;39710;39711;39712;39713;39714 25367;25368;25369;25370;25371;25372;25373;25374 25372 1423;1424 8 MPEMHFK Oxidation (M) 934.40409 0.40409427 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 26.839 27.148 2 0.032908 6660 20181213_JW_Orientia_Karp_1_2 83.614 9.1991 16788000 4921600 5622400 3312400 1498500 0 580220 0 853110 6538 1782 5624 39715;39716;39717;39718;39719;39720 25375 25375 1423;1424 1 MPEMNIK Oxidation (M) 877.40376 0.40375991 1782 Q09666;Q6ZQN2;B4DTV0;Q8N274;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 26.142 26.494 2 0.012585 6375 20181213_JW_Orientia_Karp_1_3 111.65 31.093 149340000 0 81669000 44649000 0 8687300 5718300 0 8618000 6539 1782 5625 39721;39722;39723;39724;39725;39726 25376;25377;25378;25379;25380;25381 25377 1389;1390 6 MPEMNIK 2 Oxidation (M) 893.39867 0.39867454 1782 Q09666;Q6ZQN2;B4DTV0;Q8N274;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 2 0 By matching By matching By MS/MS By matching 1 1 1 1 19.217 19.391 2 0.033772 3457 20181213_JW_Orientia_Karp_2_1 76.774 10.877 83168000 39966000 0 13815000 9004500 0 20382000 0 0 6540 1782 5625 39727;39728;39729;39730 25382 25382 1389;1390 1 MPFLSISSPK Oxidation (M) 1121.5791 0.57908174 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 50.542 50.808 2 0.0061986 17896 20181213_JW_Orientia_Karp_2_1 98.033 49.61 954290000 933650000 0 0 12868000 0 7769400 0 0 6541 1782 5626 39731;39732;39733 25383;25384;25385 25384 1425 3 MPFLSISSPK Unmodified 1105.5842 0.58416712 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 57.913 58.195 2 0.00015524 20588 20181213_JW_Orientia_Karp_3_2 146.79 95.726 121280000 60264000 8768300 36788000 0 0 9558300 0 5903800 6542 1782 5626 39734;39735;39736;39737;39738 25386;25387;25388;25389;25390 25390 5 MPFPVNHGASSEDTLLK Unmodified 1841.8982 0.89818405 845 V9HW74;D6R956;P09936;A6NLJ7;D6RE83 HEL-117;UCHL1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 49.778 50.031 3 0.0065221 16667 20181213_JW_Orientia_Karp_3_2 85.469 54.354 146200000 128970000 0 0 0 7020000 0 0 10208000 6543 845 5627 39739;39740;39741 25391 25391 1 MPIQDFSK Oxidation (M) 980.46372 0.46371763 1119 Karp_00311 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 34.509 34.8 2 0.012444 10060 20181213_JW_Orientia_Karp_1_3 95.815 19.041 23852000 5150600 9721400 4498400 0 1937700 0 2543900 0 6544 1119 5628 39742;39743;39744;39745;39746 25392;25393 25393 643 2 MPKEVYEDPEVTGKNR Oxidation (M);Deamidation (NQ) 1907.8935 0.8934926 1889 Q7Z4T9-6 yes yes 0 1 1 2 By MS/MS 1 43.764 43.915 2 0.026576 14039 20181213_JW_Orientia_Karp_2_2 75.819 20.562 0 0 0 0 0 0 0 0 0 6545 1889 5629 39747 25394 25394 1192 1489 1 MPKQVEVRMHDSHLGSEEPK Acetyl (Protein N-term);Deamidation (NQ) 2376.1202 0.12021485 283 A2A2U1;P43004-2 SLC1A2 Amino acid transporter;Excitatory amino acid transporter 2 yes no 1 1 0 2 By matching By MS/MS 1 1 46.919 47.273 3 0.040829 14904 20181213_JW_Orientia_Karp_3_2 53.773 12.929 49560000 0 0 3642300 0 0 0 0 45918000 6546 283 5630 39748;39749 25395 25395 1357 0 MPPVGSQDPEVQAEK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1670.7345 0.73453235 1465 L8E7P6 FLG yes yes 1 2 1 0 By matching By MS/MS By matching 1 1 1 48.632 49.116 2 0.030958 17073 20181213_JW_Orientia_Karp_2_3 44.847 7.7032 35957000 0 0 0 12408000 0 23168000 380950 0 6547 1465 5631 39750;39751;39752 25396 25396 1883;1884 0 MPPYDEQTQAFIDAAQEAR Oxidation (M) 2195.9793 0.9793475 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 59.697 60.009 3 0.00021038 23086 20181213_JW_Orientia_Karp_2_1 125.51 62.178 20253000 0 5425900 4827100 4633300 0 5366700 0 0 6548 588 5632 39753;39754;39755;39756 25397;25398 25397 360 2 MPSFGVSAPGK Unmodified 1076.5325 0.5324659 1902 Q8IVF2-3;Q8IVF2 AHNAK2 Protein AHNAK2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 46.937 47.249 2 0.019123 17021 20181213_JW_Orientia_Karp_1_2 85.807 42.893 51058000 15954000 18515000 0 6613300 0 4835200 0 5140200 6549 1902 5633 39757;39758;39759;39760;39761 25399 25399 1 MPSLEISAPK Oxidation (M) 1087.5583 0.5583463 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 43.852 44.114 2 0.027648 15822 20181213_JW_Orientia_Karp_1_1 76.064 30.983 29169000 14308000 5243300 7078600 0 0 2360400 0 179130 6550 1782 5634 39762;39763;39764;39765;39766 25400 25400 1426 1 MPSLEISAPK Unmodified 1071.5634 0.56343168 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 50.628 50.918 2 0.00090418 19288 20181213_JW_Orientia_Karp_1_3 126.24 76.707 88275000 28178000 36817000 22525000 0 0 0 0 754930 6551 1782 5634 39767;39768;39769;39770 25401;25402;25403 25403 3 MPSMNIQTHK Unmodified 1185.5634 0.56344845 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 32.846 33.12 3 0.024592 9351 20181213_JW_Orientia_Karp_1_3 62.166 16.165 18338000 7745100 3252700 6344000 995950 0 0 0 0 6552 1782 5635 39771;39772;39773;39774 25404;25405 25405 2 MPTFSTPGAK Unmodified 1035.5059 0.5059168 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 42.135 42.479 2 0.013229 13574 20181213_JW_Orientia_Karp_3_1 88.177 43.8 90426000 26925000 18765000 19121000 5586300 0 2533700 16970000 524140 6553 1782 5636 39775;39776;39777;39778;39779;39780;39781 25406;25407 25407 2 MPTGFVAPILCVLLPSPTR Acetyl (Protein N-term);Oxidation (M) 2126.1268 0.12680378 1929 Q92841 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 1 0 1 0 By matching By MS/MS 1 1 59.625 59.9 3 0.017742 24921 20181213_JW_Orientia_Karp_1_3 55.912 14.545 16005000 0 3160500 12845000 0 0 0 0 0 6554 1929 5637 39782;39783 25408 25408 1504 1 MPWPFSESIKK Acetyl (Protein N-term);Oxidation (M) 1406.6904 0.69042311 1933 Q96BY7 ATG2B Autophagy-related protein 2 homolog B yes yes 1 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 78.844 78.834 2 0.0069622 31678 20181213_JW_Orientia_Karp_3_2 89.296 21.592 105220000 30740000 13475000 17434000 0 20486000 0 23083000 0 6555 1933 5638 39784;39785;39786;39787;39788;39789 25409;25410;25411;25412;25413;25414 25414 1505 6 MQAHIQDLEEQLDEEEGAR Unmodified 2240.0015 0.0015395026 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 51.293 51.594 3 0.003102 19775 20181213_JW_Orientia_Karp_1_2 163 117.61 79769000 29482000 20376000 21244000 3738600 1845000 1619200 0 1464100 6556 944 5639 39790;39791;39792;39793;39794;39795;39796 25415;25416 25416 2 MQDLTQK Oxidation (M) 878.41677 0.41676744 1390 Karp_02139 yes yes 0 0 1 0 By matching By matching By MS/MS 1 1 1 18.401 18.7 2 0.017181 3329 20181213_JW_Orientia_Karp_3_1 101.6 13.572 3471800 0 1763800 1216100 0 0 0 491850 0 6557 1390 5640 39797;39798;39799 25417 25417 988 1 MQEAQQALVSQDNR Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1676.7312 0.7311783 413 A8MVE6 RNF212B yes yes 1 2 1 0 By MS/MS 1 23.994 24.245 2 0.027807 5088 20181213_JW_Orientia_Karp_2_3 56.043 13.648 0 0 0 0 0 0 0 0 0 6558 413 5641 39800 25418 25418 1433;1434 282 1 MQELLQTQDFSK Oxidation (M) 1482.7024 0.70244436 108 B4DZH9;B2R5U3;A0A024R571;Q9H4M9;C9J2Z4;B4DMV9;B4DR44;B4DTR4 EHD1 EH domain-containing protein 1 yes no 0 0 1 0 By matching By MS/MS By MS/MS 1 1 1 47.037 47.312 2 0.005418 16773 20181213_JW_Orientia_Karp_1_3 103.44 38.282 13092000 0 7013600 6078000 0 0 0 0 0 6559 108 5642 39801;39802;39803 25419;25420 25419 105 2 MQELNDLLEELR Oxidation (M);Deamidation (NQ) 1518.7236 0.72357373 1371 Karp_02001 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 2 2 2 1 2 69.582 69.709 2 3.3566E-51 29561 20181213_JW_Orientia_Karp_1_1 276.17 78.441 825800000 189820000 254650000 229940000 10174000 68424000 41718000 13644000 17431000 6560 1371 5643 39804;39805;39806;39807;39808;39809;39810;39811;39812;39813;39814;39815;39816;39817;39818;39819;39820;39821;39822 25421;25422;25423;25424;25425;25426;25427;25428;25429;25430;25431;25432;25433;25434;25435;25436;25437 25421 845 955 17 MQELNDLLEELR Oxidation (M) 1517.7396 0.73955814 1371 Karp_02001 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 2 3 1 2 4 68.679 68.881 2 7.2766E-96 29635 20181213_JW_Orientia_Karp_1_3 317.4 107.67 4116400000 1781600000 16942000 1176800000 5565900 584810000 356040000 25537000 169150000 6561 1371 5643 39823;39824;39825;39826;39827;39828;39829;39830;39831;39832;39833;39834;39835;39836;39837;39838;39839;39840;39841;39842;39843 25438;25439;25440;25441;25442;25443;25444;25445;25446;25447;25448;25449;25450;25451;25452;25453;25454;25455 25446 955 18 MQELNDLLEELR Deamidation (NQ) 1502.7287 0.72865911 1371 Karp_02001 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 2 3 2 71.086 71.206 2 4.3463E-51 31243 20181213_JW_Orientia_Karp_1_2 276.17 66.379 770410000 252790000 212230000 154620000 10214000 44528000 24835000 57062000 14136000 6562 1371 5643 39844;39845;39846;39847;39848;39849;39850;39851;39852;39853;39854;39855;39856;39857;39858;39859;39860 25456;25457;25458;25459;25460;25461;25462;25463;25464;25465;25466;25467;25468 25459 845 13 MQELNDLLEELR Unmodified 1501.7446 0.74464352 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 2 1 1 2 71.656 71.76 2 7.5217E-65 28963 20181213_JW_Orientia_Karp_2_1 297.83 130.71 7065800000 1245800000 1607700000 3229500000 169930000 331390000 163630000 315690000 2141700 6563 1371 5643 39861;39862;39863;39864;39865;39866;39867;39868;39869;39870;39871;39872;39873;39874 25469;25470;25471;25472;25473;25474;25475;25476;25477;25478;25479;25480;25481;25482 25478 14 MQELQEAQNARIEIAQK 3 Deamidation (NQ) 2001.9677 0.96772018 64 B7Z954;A0A024R233;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-7 TJP2 Tight junction protein ZO-2 yes no 0 3 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 71.045 71.165 2 0.014108 28833 20181213_JW_Orientia_Karp_2_3 101.56 21.896 87577000 7714500 14371000 6317100 10067000 13033000 8970100 21092000 6013400 6564 64 5644 39875;39876;39877;39878;39879;39880;39881;39882 25483 25483 29;1272;1273 1 MQGQVITMTMSPNIIK 3 Oxidation (M) 1838.894 0.89402665 1377 Karp_02114 yes yes 0 0 3 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 45.729 46.062 2 0.00098629 14573 20181213_JW_Orientia_Karp_3_2 131.06 81.433 17794000 6154800 2937100 0 0 2733800 0 3441100 2527700 6565 1377 5645 39883;39884;39885;39886;39887;39888 25484;25485;25486;25487;25488 25488 972;973;974 5 MQGQVITMTMSPNIIK 2 Oxidation (M) 1822.8991 0.89911203 1377 Karp_02114 yes yes 0 0 2 0 By matching By MS/MS By matching By matching 1 1 1 1 52.546 52.846 2 0.00044943 20752 20181213_JW_Orientia_Karp_1_2 132.14 84.537 28707000 8290600 8806100 7728900 0 0 0 3881000 0 6566 1377 5645 39889;39890;39891;39892 25489;25490 25490 972;973;974 2 MQGQVITMTMSPNIIK 2 Oxidation (M);2 Deamidation (NQ) 1824.8671 0.8671432 1377 Karp_02114 yes yes 0 2 2 0 By MS/MS 1 48.29 48.64 2 0.03141 17834 20181213_JW_Orientia_Karp_1_2 55.261 18.844 0 0 0 0 0 0 0 0 0 6567 1377 5645 39893 25491 25491 871;1858 972;973;974 1 MQHLIAR Oxidation (M) 883.46981 0.46980607 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 18.459 18.805 2 0.015642 3610 20181213_JW_Orientia_Karp_2_1 104.11 54.521 37292000 7133900 7941600 5488300 3885900 1074900 3774000 2292600 5700500 6568 1597 5646 39894;39895;39896;39897;39898;39899;39900;39901;39902 25492;25493;25494;25495;25496;25497;25498;25499 25495 1220 8 MQHNLEQQIQAR Unmodified 1494.7361 0.73614452 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 30.4 30.75 3 0.0070287 8799 20181213_JW_Orientia_Karp_1_1 86.463 28.422 41604000 30512000 2892200 5701900 1508300 435320 0 554180 0 6569 316 5647 39903;39904;39905;39906;39907;39908 25500;25501;25502 25500 3 MQIEQEK Oxidation (M);2 Deamidation (NQ) 922.39536 0.3953633 1374 Karp_02110 yes yes 0 2 1 0 By matching By MS/MS By matching By matching 1 1 1 1 24.106 24.331 2 0.024147 5407 20181213_JW_Orientia_Karp_1_3 79.469 8.1729 1750200 445220 0 546050 408150 350780 0 0 0 6570 1374 5648 39909;39910;39911;39912 25503 25503 1855;1856 964 0 MQININSK Oxidation (M) 962.48552 0.48551571 1396 Karp_02152 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 27.59 27.9 2 0.0036963 6377 20181213_JW_Orientia_Karp_2_3 131.03 34.841 84935000 28349000 6422600 17863000 7013300 2963500 4788400 17535000 0 6571 1396 5649 39913;39914;39915;39916;39917;39918;39919;39920;39921;39922 25504;25505;25506;25507;25508;25509;25510 25509 998 7 MQINSLHMQLNSHR 2 Oxidation (M);2 Deamidation (NQ) 1741.7876 0.78758774 577 B4DHI7 yes yes 0 2 2 0 By MS/MS 1 72.663 72.713 2 0.039496 26792 20181213_JW_Orientia_Karp_3_1 42.21 6.5001 0 0 0 0 0 0 0 0 0 6572 577 5650 39923 25511 25511 1527 1 MQINVQEVVLGDLVEIK Oxidation (M);3 Deamidation (NQ) 1944.9966 0.99656069 912 E9PRA5;Q13733 ATP1A4 Sodium/potassium-transporting ATPase subunit alpha-4 yes no 0 3 1 0 By MS/MS By matching By matching By matching 1 1 1 1 74.635 74.687 2 0.037519 34442 20181213_JW_Orientia_Karp_1_3 58.674 15.865 32463000 0 0 21797000 2037700 7710800 0 0 918330 6573 912 5651 39924;39925;39926;39927 25512 25512 1711;1712 0 MQLLEIITTEK Unmodified 1317.7214 0.72138888 885 E9KL44;P40939;B4DRH6;B4DDZ5 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 65.793 66.033 2 0.0078938 29522 20181213_JW_Orientia_Karp_1_1 99.522 46.733 19794000 6962700 0 10449000 0 0 0 2225000 156920 6574 885 5652 39928;39929;39930;39931 25513 25513 1 MQLMREQAQQEEQR Oxidation (M);2 Deamidation (NQ) 1821.7985 0.79854636 248 Q709A8;B1AKA9;Q86WB1;Q709A9;Q709A5;B1AKB1;B1AKB2;F6RFE3;B1AKB4;A0A024RCY3;B4DPL3;B0QYS6;B0QYS7;P19484-2;P19484 TFEB;AlphaTFEB Transcription factor EB yes no 0 2 1 1 By matching By MS/MS By matching By matching 1 1 1 1 71.723 71.85 2 0.018034 32927 20181213_JW_Orientia_Karp_1_2 94.82 14.65 185310000 66878000 109750000 0 471570 0 0 0 8207100 6575 248 5653 39932;39933;39934;39935 25514 25514 1341;1342;1343 178 1 MQNDAGEFVDLYVPR Acetyl (Protein N-term);Oxidation (M) 1810.8196 0.81959938 1742 Q8WVC2;Q6FGH5;P63220;Q9BYK1;Q9BYK2;Q13666 RPS21 40S ribosomal protein S21 yes no 1 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 74.259 74.275 2 1.9248E-05 29949 20181213_JW_Orientia_Karp_2_2 160.46 107.54 86812000 31102000 9127700 13219000 0 10420000 10582000 12362000 0 6576 1742 5654 39936;39937;39938;39939;39940;39941 25515;25516;25517;25518;25519 25517 1366 5 MQNDAGEFVDLYVPR Acetyl (Protein N-term);Deamidation (NQ) 1795.8087 0.80870034 1742 Q8WVC2;Q6FGH5;P63220;Q9BYK1;Q9BYK2;Q13666 RPS21 40S ribosomal protein S21 yes no 1 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 77.62 77.59 2 0.03705 36564 20181213_JW_Orientia_Karp_1_1 91.914 63.587 17833000 5312700 0 4821300 1464700 0 2993000 3240900 0 6577 1742 5654 39942;39943;39944;39945;39946 25520 25520 1960 1 MQNPQILAALQER Acetyl (Protein N-term);2 Deamidation (NQ) 1554.7712 0.77119262 221 F8W118;F8VV59;B7Z9C2;A0A024RBE6;B3KV44;F8VRJ2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 1 2 0 0 By MS/MS 1 44.049 44.701 3 0.022243 14702 20181213_JW_Orientia_Karp_3_1 63.091 23.025 0 0 0 0 0 0 0 0 0 6578 221 5655 39947 25521 25521 86;1330;1331 1 MQPLLCLGNLEDAR Acetyl (Protein N-term);2 Deamidation (NQ) 1672.78 0.78004275 1851 Q5TCI8;D6RB20 LMNA yes no 1 2 0 0 By MS/MS 1 75.817 75.867 2 0.0058424 28414 20181213_JW_Orientia_Karp_3_1 91.584 7.3713 23590000 0 0 0 0 0 0 23590000 0 6579 1851 5656 39948 25522 25522 1174;2004 1 MQPWHGKAMQR Acetyl (Protein N-term);2 Deamidation (NQ) 1412.6329 0.632925 326 A6PW79;Q8N884-2;Q8N884 MB21D1 Cyclic GMP-AMP synthase yes no 1 2 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 36.207 36.474 2 0.032106 10673 20181213_JW_Orientia_Karp_2_3 62.464 28.278 19875000 3907500 3022400 8932600 1477700 1293300 1241700 0 0 6580 326 5657 39949;39950;39951;39952;39953;39954 25523 25523 1386;1387 0 MQQIPQEKSINDYLEK Acetyl (Protein N-term);Deamidation (NQ) 2005.9667 0.96665755 674 B4E0I2 yes yes 1 1 0 1 By matching By matching By MS/MS 1 1 1 35.504 35.924 3 0.028861 9723 20181213_JW_Orientia_Karp_3_2 52.966 20.775 10446000 4209900 0 0 0 0 0 6013600 222050 6581 674 5658 39955;39956;39957 25524 25524 232 1 MQQKAQITSQQLR 3 Deamidation (NQ) 1561.777 0.77700628 846 D6RAE5 POLK yes yes 0 3 0 1 By MS/MS 1 31.439 31.69 3 0.030466 7643 20181213_JW_Orientia_Karp_2_2 61.435 6.6633 0 0 0 0 0 0 0 0 0 6582 846 5659 39958 25525 25525 1676;1677;1678;1679;1680 1 MQQNIQELEEQLEEEESAR Unmodified 2332.0489 0.048883626 47 A0A024R1N1;P35579;Q86XU5;P35579-2;Q99529 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 62.724 62.961 2;3 1.1327E-24 27185 20181213_JW_Orientia_Karp_1_2 220.78 180.18 364420000 149070000 63701000 128160000 2213400 13372000 5299800 0 2603500 6583 47 5660 39959;39960;39961;39962;39963;39964;39965;39966;39967;39968;39969 25526;25527;25528;25529;25530;25531;25532 25528 7 MQQNIQELEEQLEEEESAR Oxidation (M) 2348.0438 0.043798248 47 A0A024R1N1;P35579;Q86XU5;P35579-2;Q99529 MYH9 Myosin-9 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 3 2 1 1 1 60.289 60.587 2;3 1.3734E-121 25323 20181213_JW_Orientia_Karp_1_3 330.04 237.26 463330000 91545000 100760000 93096000 23491000 23107000 118480000 6779500 6069700 6584 47 5660 39970;39971;39972;39973;39974;39975;39976;39977;39978;39979;39980;39981;39982;39983;39984 25533;25534;25535;25536;25537;25538;25539;25540 25535 47 8 MQQQLDEYQELLDIK Unmodified 1892.919 0.91897907 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;P02545-2;W8QEH3;Q3BDU5;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 66.354 66.561 2 1.0113E-94 29631 20181213_JW_Orientia_Karp_1_1 310.34 210.81 191800000 71293000 40815000 46217000 9172400 11185000 6440000 617090 6059700 6585 1543;1544;1851 5661 39985;39986;39987;39988;39989;39990;39991;39992 25541;25542;25543;25544;25545;25546;25547 25541 7 MQQQLDEYQELLDIK Oxidation (M) 1908.9139 0.91389369 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;P02545-2;W8QEH3;Q3BDU5;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 1 0 By MS/MS 1 64.745 64.896 2 1.8567E-06 25272 20181213_JW_Orientia_Karp_2_2 175.29 102.76 15336000 0 0 0 0 15336000 0 0 0 6586 1543;1544;1851 5661 39993 25548 25548 1147 1 MQQQSNIR Oxidation (M) 1019.4818 0.48182731 1304 Karp_01242 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 14.255 14.518 2 0.006609 2204 20181213_JW_Orientia_Karp_2_3 110.41 35.218 2248600 1469600 0 0 393150 0 169240 216580 0 6587 1304 5662 39994;39995;39996;39997;39998 25549;25550;25551;25552 25551 861 4 MQTFVTQQWKQSK 4 Deamidation (NQ) 1642.7549 0.75487386 931 Q49AI7;F5H3X8 PARP8 yes no 0 4 0 1 By MS/MS 1 53.085 53.634 2 0.042123 19501 20181213_JW_Orientia_Karp_2_1 47.971 16.214 0 0 0 0 0 0 0 0 0 6588 931 5663 39999 25553 25553 1718;1719;1720;1721 1 MQVVSDLATQLFEVAAHDFK Oxidation (M) 2264.1147 0.11471877 1398 Karp_02184 yes yes 0 0 1 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 74.225 74.264 3 0.018711 30064 20181213_JW_Orientia_Karp_3_2 71.853 39.672 56229000 21870000 17026000 14901000 0 0 0 0 2431600 6589 1398 5664 40000;40001;40002;40003 25554;25555 25555 1004 2 MQVVSDLATQLFEVAAHDFK Unmodified 2248.1198 0.11980414 1398 Karp_02184 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 75.035 75.044 3 0.034135 35111 20181213_JW_Orientia_Karp_1_2 45.221 13.988 66806000 32015000 10706000 17519000 0 3503900 2576400 0 486620 6590 1398 5664 40004;40005;40006;40007;40008;40009 25556 25556 1 MQYLLSK Oxidation (M) 897.46299 0.46298935 1170 Karp_00624 yes yes 0 0 1 0 By MS/MS By MS/MS 1 1 35.95 36.401 2 0.012438 10684 20181213_JW_Orientia_Karp_3_1 129.68 55.267 0 0 0 0 0 0 0 0 0 6591 1170 5665 40010;40011 25557;25558 25558 718 2 MRHHTATLTEQQRR Acetyl (Protein N-term);2 Deamidation (NQ) 1807.8748 0.87476327 1043 J3QRM4 PEX10 yes yes 1 2 0 2 By matching By MS/MS By matching By matching 1 1 1 1 33.755 34.029 2 0.036968 9931 20181213_JW_Orientia_Karp_1_2 56.404 6.051 23867000 7577000 5397600 6818800 4073400 0 0 0 0 6592 1043 5666 40012;40013;40014;40015 25559 25559 1782;1783 1 MRIFTVAQMDDNSIQMKK 2 Oxidation (M);Deamidation (NQ) 2188.0326 0.032645396 337 B7Z2T6;B7Z1X6;B7Z3I0;I3L4N6;B4DF30;A8K143;Q9UP95-3;Q9UP95-5;Q9UP95-2;Q9UP95-6;Q9UP95;Q9UP95-7;Q9H2X9-2;Q9H2X9 SLC12A4;SLC12A5 Solute carrier family 12 member 4;Solute carrier family 12 member 5 yes no 0 1 2 2 By MS/MS 1 50.623 50.822 3 0.04135 19107 20181213_JW_Orientia_Karp_1_3 46.121 12.228 5452700 0 0 5452700 0 0 0 0 0 6593 337 5667 40016 25560 25560 1392 0 MRLQDQQLAR Acetyl (Protein N-term);Oxidation (M);3 Deamidation (NQ) 1318.6187 0.61871473 1897 Q86Y02 FAM167A yes yes 1 3 1 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 3 3 3 1 58.867 59.139 2 0.011728 24951 20181213_JW_Orientia_Karp_1_1 78.149 36.273 250300000 80859000 55797000 27858000 15360000 32677000 34045000 0 3705500 6594 1897 5668 40017;40018;40019;40020;40021;40022;40023;40024;40025;40026;40027;40028;40029;40030;40031;40032;40033 25561;25562;25563;25564;25565 25561 2033;2034;2035 1492 5 MRQSLPMQWLHRPLLEGR Oxidation (M);2 Deamidation (NQ) 2265.1511 0.15106147 1528 O94822;O94822-3 LTN1 E3 ubiquitin-protein ligase listerin yes no 0 2 1 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 62.501 62.745 3 0.042788 24416 20181213_JW_Orientia_Karp_2_3 45.083 10.585 348970000 58696000 45443000 101990000 0 89195000 42308000 0 11335000 6595 1528 5669 40034;40035;40036;40037;40038;40039 25566 25566 1912;1913 1140;1141 1 MRQSLPMQWLHRPLLEGR 2 Oxidation (M);2 Deamidation (NQ) 2281.146 0.14597609 1528 O94822;O94822-3 LTN1 E3 ubiquitin-protein ligase listerin yes no 0 2 2 2 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 59.204 59.534 3 0.0065376 21450 20181213_JW_Orientia_Karp_3_2 82.942 18.053 775580000 46751000 195070000 94424000 132290000 269210000 0 917530 36921000 6596 1528 5669 40040;40041;40042;40043;40044;40045;40046 25567 25567 1912;1913 1140;1141 1 MRWQLSEQLR Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1405.666 0.66599927 713 C9JLA8;C9J5M2;S4R352;S4R314;B7Z2C6 ARHGAP4 yes no 1 2 1 1 By matching By matching By matching By MS/MS 1 1 1 1 40.083 40.321 3 0.009031 11955 20181213_JW_Orientia_Karp_2_2 82.749 6.6067 20122000 9511300 2544200 0 1546000 6520500 0 0 0 6597 713 5670 40047;40048;40049;40050 25568 25568 1598;1599 426 1 MSADNQLQVIFITNDR Acetyl (Protein N-term);3 Deamidation (NQ) 1908.8775 0.87750819 422 F2Z2C0;Q49AG4;G3V1J5;A8QI98;Q9Y2L1-2;Q9Y2L1 DIS3 Exosome complex exonuclease RRP44 yes no 1 3 0 0 By MS/MS 1 45.713 46.162 2 0.029323 15422 20181213_JW_Orientia_Karp_2_1 56.951 9.6496 0 0 0 0 0 0 0 0 0 6598 422 5671 40051 25569 25569 165;166;1444 1 MSAPLDAALHALQEEQAR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 2008.9524 0.95240447 1750 P80217;P80217-2 IFI35 Interferon-induced 35 kDa protein yes no 1 1 1 0 By MS/MS 1 57.467 57.665 3 0.038576 23632 20181213_JW_Orientia_Karp_1_3 43.024 7.721 3952900 0 0 3952900 0 0 0 0 0 6599 1750 5672 40052 25570 25570 1963 0 MSASDPNSSIFLTDTAK Oxidation (M) 1799.8247 0.82474434 138 A0A024R6K8;P23381;P23381-2;H0YJP3 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.784 52.129 2 4.8727E-101 20512 20181213_JW_Orientia_Karp_1_1 310.9 254.35 275510000 75777000 62109000 59834000 11591000 16414000 10483000 37288000 2019000 6600 138 5673 40053;40054;40055;40056;40057;40058;40059;40060 25571;25572;25573;25574;25575;25576;25577 25571 125 7 MSASDPNSSIFLTDTAK Unmodified 1783.8298 0.82982971 138 A0A024R6K8;P23381;P23381-2;H0YJP3 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 54.989 55.271 2 3.5785E-05 21990 20181213_JW_Orientia_Karp_1_3 147.51 88.138 264050000 91869000 69417000 94350000 0 7741100 0 0 674450 6601 138 5673 40061;40062;40063;40064;40065 25578 25578 1 MSASDPNSSIFLTDTAK Deamidation (NQ) 1784.8138 0.8138453 138 A0A024R6K8;P23381;P23381-2;H0YJP3 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 1 0 0 By matching By MS/MS 1 1 59.609 59.708 2 0.017412 24896 20181213_JW_Orientia_Karp_1_3 94.673 64.281 29840000 14410000 0 15430000 0 0 0 0 0 6602 138 5673 40066;40067 25579 25579 55 1 MSEGGGQVSCIFAAPTR Acetyl (Protein N-term);Deamidation (NQ) 1809.8026 0.80256911 1903 Q8IWL8 STH Saitohin yes yes 1 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 1 2 2 53.521 53.95 2 0.0049308 21267 20181213_JW_Orientia_Karp_1_2 113.22 41.875 1060700000 220630000 238020000 0 186910000 186780000 121940000 81496000 24885000 6603 1903 5674 40068;40069;40070;40071;40072;40073;40074;40075;40076;40077;40078 25580;25581;25582;25583;25584 25581 2040 2 MSGALDVLQIK Unmodified 1173.6427 0.64274463 150 A0A024R7P5 LOC388524 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 75.616 75.626 2 0.0016985 35432 20181213_JW_Orientia_Karp_1_2 119.21 3.5121 150210000 42956000 9644700 63714000 0 9633700 0 24260000 0 6604 150 5675 40079;40080;40081;40082;40083 25585;25586;25587;25588 25586 4 MSGECAPNVSVSVSTSHTTISGGGSR Oxidation (M) 2580.1544 0.1544281 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 4 3 2 2 41.18 41.501 2;3 3.6167E-11 12362 20181213_JW_Orientia_Karp_3_2 147.78 124.98 1284000000 100890000 85574000 112520000 279930000 11140000 116470000 202300000 375180000 + 6605 995;996 5676 40084;40085;40086;40087;40088;40089;40090;40091;40092;40093;40094;40095;40096;40097;40098;40099 25589;25590;25591;25592;25593;25594;25595;25596;25597;25598;25599;25600;25601;25602;25603;25604 25603 549 15 MSGECAPNVSVSVSTSHTTISGGGSR Unmodified 2564.1595 0.15951348 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.316 42.609 3 0.00065396 13812 20181213_JW_Orientia_Karp_2_3 101.2 74.162 552220000 33725000 85672000 48801000 52077000 95243000 88972000 147730000 0 + 6606 995;996 5676 40100;40101;40102;40103;40104;40105;40106 25605;25606;25607;25608;25609;25610;25611;25612 25611 8 MSGLICLQYGLWHGQK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1948.9175 0.91753928 1631 P26232-5 CTNNA2 Catenin alpha-2 yes yes 1 1 1 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 52.694 53.039 3 0.026751 19359 20181213_JW_Orientia_Karp_2_3 49.483 17.707 484930000 96520000 150030000 64403000 49959000 56212000 49850000 16251000 1703400 6607 1631 5677 40107;40108;40109;40110;40111;40112;40113;40114 25613 25613 1935 1257 1 MSGPTWLPPKQPEPARAPQGR Acetyl (Protein N-term);Deamidation (NQ) 2343.1794 0.17938471 921 F2ZC09;F2ZC06;Q15654-3;Q15654-2;Q15654 TRIP6i4;TRIP6i1;TRIP6 Thyroid receptor-interacting protein 6 yes no 1 1 0 2 By MS/MS 1 78.251 78.251 2 0.024519 36947 20181213_JW_Orientia_Karp_1_1 62.287 21.81 0 0 0 0 0 0 0 0 0 6608 921 5678 40115 25614 25614 1716 1 MSIGTCCFPGTNR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1558.6214 0.62143362 1045 K7EIH8 DNAJC7 yes yes 1 1 1 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 72.005 72.074 2 0.028743 29424 20181213_JW_Orientia_Karp_2_3 51.445 16.177 75612000 13662000 19881000 19816000 703970 0 21548000 0 0 6609 1045 5679 40116;40117;40118;40119;40120 25615;25616 25616 385 1 MSLLQLVEILQSK Unmodified 1500.8586 0.85855107 1488 O00159;D3DTH7;F5H6E2;B7Z3E5;O00159-2;O00159-3;B7Z9C0;A1L180 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 76.362 76.355 2 0.0016294 35558 20181213_JW_Orientia_Karp_1_3 158.86 104.25 9634600 2295600 0 3404900 1066600 591830 0 1649300 626240 6610 1488 5680 40121;40122;40123;40124;40125;40126 25617;25618;25619 25618 2 MSLPDVDLDLK Oxidation (M) 1260.6272 0.62715415 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 59.246 59.533 2 0.0056538 24979 20181213_JW_Orientia_Karp_1_2 101.38 30.829 56049000 12940000 11162000 9060900 6566400 5487400 8539500 0 2293400 6611 1782 5681 40127;40128;40129;40130;40131;40132;40133 25620;25621;25622;25623;25624 25621 1427 5 MSLPDVDLDLK Unmodified 1244.6322 0.63223953 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 65.778 66 2 0.0049843 23030 20181213_JW_Orientia_Karp_3_1 105.4 38.477 58123000 14236000 8916600 10847000 0 0 7543100 9817700 6762700 6612 1782 5681 40134;40135;40136;40137;40138;40139 25625;25626;25627;25628 25628 4 MSLQKLMEPEAGTNR Acetyl (Protein N-term);Oxidation (M) 1761.839 0.83895461 1677 P47893;P47888 OR3A2;OR3A3 Olfactory receptor 3A2;Olfactory receptor 3A3 yes no 1 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 55.878 56.23 2 0.0030836 22861 20181213_JW_Orientia_Karp_1_2 125.23 29.054 4841700000 1295900000 748620000 843760000 763340000 603090000 563220000 0 23748000 6613 1677 5682 40140;40141;40142;40143;40144;40145;40146;40147 25629;25630;25631;25632;25633;25634;25635 25630 1297 7 MSLVLDPETPSYDQIPNINPNHSQMIIEESISMAK 2 Oxidation (M);Deamidation (NQ) 3973.8635 0.86352097 1395 Karp_02151 yes yes 0 1 2 0 By MS/MS 1 71.065 71.215 3 0.0023745 32434 20181213_JW_Orientia_Karp_1_2 57.097 42.723 13250000 0 13250000 0 0 0 0 0 0 6614 1395 5683 40148 25636 25636 897 992;993 1 MSLVLFLSKLENSK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1666.8852 0.88515975 1461 L0R5C6 RNF111 yes yes 1 1 1 1 By MS/MS 1 56.826 57.024 2 0.031786 23090 20181213_JW_Orientia_Karp_1_3 48.981 12.66 15452000 0 0 15452000 0 0 0 0 0 6615 1461 5684 40149 25637 25637 990 0 MSLVMPAMAPNETLSGR 3 Oxidation (M) 1851.8529 0.85289012 1859 Q6AZW6;Q99941-2;Q99941 ATF6B Cyclic AMP-dependent transcription factor ATF-6 beta;Processed cyclic AMP-dependent transcription factor ATF-6 beta yes no 0 0 3 0 By MS/MS 1 60.265 60.775 2 0.016132 22294 20181213_JW_Orientia_Karp_3_2 74.962 11.268 0 0 0 0 0 0 0 0 0 6616 1859 5685 40150 25638 25638 1470;1471;1472 1 MSQGLALLPRLDCSGR Acetyl (Protein N-term);Deamidation (NQ) 1815.8971 0.89713819 1479 M0R0H2;M0QXN8;M0R0V4 ZNF114 yes no 1 1 0 1 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 53.272 53.592 3 0.022485 19452 20181213_JW_Orientia_Karp_2_1 65.374 30.337 87294000 0 37893000 20321000 7335200 7693300 14052000 0 0 6617 1479 5686 40151;40152;40153;40154;40155 25639;25640 25639 1898 0 MSQGQPILSTEEAK Oxidation (M) 1533.7345 0.73447277 1428 Karp_02381 yes yes 0 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.087 37.464 2 9.6058E-59 12023 20181213_JW_Orientia_Karp_1_1 273.74 193.03 205420000 67091000 44046000 59165000 11429000 0 0 19437000 4253600 6618 1428 5687 40156;40157;40158;40159;40160;40161 25641;25642;25643;25644;25645 25641 1034 5 MSQGQPILSTEEAK Unmodified 1517.7396 0.73955814 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.127 40.457 2 0.00022727 13101 20181213_JW_Orientia_Karp_1_2 155.14 91.928 179810000 41390000 30044000 67346000 9249700 7653900 0 19895000 4231700 6619 1428 5687 40162;40163;40164;40165;40166;40167;40168 25646;25647;25648;25649;25650;25651;25652 25647 7 MSQKNGGNVLQMMYEK Acetyl (Protein N-term);2 Deamidation (NQ) 1900.8369 0.8369057 673 B4E0A5 yes yes 1 2 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 67.229 67.431 2 0.041649 29718 20181213_JW_Orientia_Karp_1_2 61.235 23.295 242690000 64099000 44168000 63384000 0 26273000 17838000 3313800 23611000 6620 673 5688 40169;40170;40171;40172;40173;40174;40175 25653 25653 1571 1 MSQMNNLISLSIKK Deamidation (NQ) 1606.8422 0.84224908 1469 L8E9L7 WDR63 yes yes 0 1 0 1 By matching By matching By MS/MS 1 1 1 69.782 69.933 3 0.036129 25120 20181213_JW_Orientia_Karp_3_1 63.292 29.113 4480300 0 0 0 0 1409100 674640 2396600 0 6621 1469 5689 40176;40177;40178 25654 25654 1887 1 MSQQDAVAALSER Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1464.6402 0.64023803 718 E5RIN9;E5RJR9;E5RIS1;E5RJ45;E5RIJ4;E5RJ05;E5RH98;B7Z3D2;Q9Y2G4-4;Q9Y2G4-1;Q9Y2G4-3;Q9Y2G4 ANKRD6 Ankyrin repeat domain-containing protein 6 yes no 1 2 1 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 66.834 66.934 2 0.023309 26833 20181213_JW_Orientia_Karp_2_3 59.067 13.066 99783000 45904000 19925000 30432000 0 0 3522300 0 0 6622 718 5690 40179;40180;40181;40182;40183 25655;25656 25656 1605;1606 427 2 MSQVQRVHSQAAKAEFEK Oxidation (M);2 Deamidation (NQ) 2091.0055 0.0055026685 742 B8ZWD1 DBI yes yes 0 2 1 2 By MS/MS 1 71.245 71.454 2 0.021208 28720 20181213_JW_Orientia_Karp_3_2 77.124 7.9077 0 0 0 0 0 0 0 0 0 6623 742 5691 40184 25657 25657 1623;1624;1625 436 1 MSRKQNQK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1078.5077 0.50770771 39 F8VX46;F8W128;F8W1X1;F8VX66;F8VZS5;F8VXP9;F8VRH4;F8VVF0;F8VXB3;F8VS10;A0A024R101;Q86XZ4 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 1 2 1 2 By MS/MS 1 27.99 28.34 2 0.022668 7185 20181213_JW_Orientia_Karp_1_2 66.682 12.525 0 0 0 0 0 0 0 0 0 6624 39 5692 40185 25658 25658 6;1259 24 1 MSSQCRSLENKFVFLK Oxidation (M);2 Deamidation (NQ) 1990.9492 0.94923334 1816 Q16665-3 yes yes 0 2 1 2 By MS/MS By matching 1 1 43.933 44.287 3 0.041344 14874 20181213_JW_Orientia_Karp_1_3 45.434 11.34 8534800 0 0 8023300 0 0 0 0 511420 6625 1816 5693 40186;40187 25659 25659 1995 0 MSSQGQSLVPMRSSQR Acetyl (Protein N-term);Deamidation (NQ) 1820.8509 0.85091628 1881 Q6ZSQ7 LOC729956 yes yes 1 1 0 1 By matching By MS/MS By matching 1 1 1 46.635 47.005 2 0.018241 16145 20181213_JW_Orientia_Karp_2_3 115.92 55.23 67749000 0 34028000 0 0 0 16275000 0 17446000 6626 1881 5694 40188;40189;40190 25660 25660 2023 1 MSVLQRILAAQVPCQK Acetyl (Protein N-term);2 Deamidation (NQ) 1884.9801 0.98013954 779 C9JTX9 HGD yes yes 1 2 0 1 By MS/MS 1 66.021 66.472 3 0.036175 23328 20181213_JW_Orientia_Karp_3_1 49.62 10.477 0 0 0 0 0 0 0 0 0 6627 779 5695 40191 25661 25661 1640;1641 1 MSVPAFIDISEEDQVRK Acetyl (Protein N-term);Deamidation (NQ) 2005.9667 0.96665755 685 E9PRY0;B4E2Q4 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 1 1 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 34.744 35.077 3 0.020511 10862 20181213_JW_Orientia_Karp_1_1 64.842 7.9707 109180000 18389000 13196000 26825000 19383000 15566000 0 15821000 0 6628 685 5696 40192;40193;40194;40195;40196;40197 25662;25663 25662 1573 2 MSVQPTVSLGGFEITPPVVLR Oxidation (M) 2242.2031 0.20313984 1562 P06748-2;P06748;A4ZU86;P06748-3;Q9BTI9;E5RI98;Q9NX34 NPM1 Nucleophosmin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 73.746 73.778 3 2.1157E-05 33824 20181213_JW_Orientia_Karp_1_3 135.21 93.301 209290000 73929000 46030000 38942000 1142900 16534000 0 32713000 0 6629 1562 5697 40198;40199;40200;40201;40202;40203 25664;25665;25666;25667;25668;25669 25667 1179 6 MSVQPTVSLGGFEITPPVVLR Unmodified 2226.2082 0.20822522 1562 P06748-2;P06748;A4ZU86;P06748-3;Q9BTI9;E5RI98;Q9NX34 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 1 2 1 74.324 74.34 2;3 4.2891E-29 34513 20181213_JW_Orientia_Karp_1_1 219.03 182.4 531120000 166600000 107110000 204920000 1647500 11988000 16549000 22303000 0 6630 1562 5697 40204;40205;40206;40207;40208;40209;40210;40211;40212;40213;40214;40215 25670;25671;25672;25673;25674 25670 5 MSWLFPLTKSASSSAAGSPGGLTSLQQQK Acetyl (Protein N-term);Deamidation (NQ) 3007.4961 0.49608698 865 E5RJ10;E5RHB8;E5RJX6;E5RG91;Q8NEZ2-3;Q8NEZ2-2;Q8NEZ2 VPS37A Vacuolar protein sorting-associated protein 37A yes no 1 1 0 1 By MS/MS 1 78.07 78.119 3 0.037338 37083 20181213_JW_Orientia_Karp_1_2 56.131 29.921 0 0 0 0 0 0 0 0 0 6631 865 5698 40216 25675 25675 1687 1 MTDQEAIQDLWQWR Oxidation (M) 1834.8308 0.83083277 1562 P06748-2;P06748;Q9BTI9 NPM1 Nucleophosmin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.301 69.459 2 9.771E-47 31240 20181213_JW_Orientia_Karp_1_2 270.02 183.9 246570000 41127000 42064000 45407000 21378000 0 25754000 56975000 13863000 6632 1562 5699 40217;40218;40219;40220;40221;40222;40223 25676;25677;25678;25679;25680;25681;25682 25677 1180 7 MTDQEAIQDLWQWR Unmodified 1818.8359 0.83591814 1562 P06748-2;P06748;Q9BTI9 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 72.081 72.173 2 1.4616E-34 33041 20181213_JW_Orientia_Karp_1_2 256.96 176.72 143670000 0 37697000 40399000 16225000 19476000 15264000 14611000 0 6633 1562 5699 40224;40225;40226;40227;40228;40229;40230 25683;25684;25685;25686;25687;25688 25684 6 MTDQVNYQAMK 2 Oxidation (M) 1359.5799 0.57988638 1789 Q13201;E7EPG1;B7Z7R8;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 2 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 26.656 27.029 2 1.705E-18 6113 20181213_JW_Orientia_Karp_2_1 232.72 163.87 28279000 3732700 3099100 3953300 3137000 4697000 0 7771200 1888300 6634 1789 5700 40231;40232;40233;40234;40235;40236;40237 25689;25690;25691;25692 25690 1435;1436 4 MTDQVNYQAMK Oxidation (M) 1343.585 0.58497176 1789 Q13201;E7EPG1;B7Z7R8;Q13201-2 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 30.95 31.403 2 0.012108 8949 20181213_JW_Orientia_Karp_1_1 113.44 65.021 8508400 0 0 5300000 0 779920 0 1687400 741010 6635 1789 5700 40238;40239;40240;40241;40242 25693;25694 25693 1435;1436 2 MTGLVDEAIDTK Unmodified 1291.633 0.63296781 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13;B4DKC9 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.419 50.669 2 0.00025683 19198 20181213_JW_Orientia_Karp_1_2 158.08 107.73 77111000 25300000 24248000 17320000 7260400 2982500 0 0 0 6636 19 5701 40243;40244;40245;40246;40247;40248 25695;25696;25697;25698;25699;25700;25701 25697 7 MTGLVDEAIDTK Oxidation (M) 1307.6279 0.62788243 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13;B4DKC9 VCL;HEL114 Vinculin yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 45.857 46.159 2 0.00042836 16369 20181213_JW_Orientia_Karp_1_2 149.33 80.961 33360000 0 12589000 12586000 0 1592200 0 0 6592900 6637 19 5701 40249;40250;40251;40252 25702;25703;25704 25702 13 3 MTGSEFDFEEMK 2 Oxidation (M) 1481.569 0.56904692 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q8TB95;B3KVE3 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 2 0 By MS/MS 1 44.873 45.524 2 0.041698 15053 20181213_JW_Orientia_Karp_3_1 64.103 47.078 921250 0 0 0 0 0 0 921250 0 6638 596 5702 40253 25705 25705 368;369 1 MTINFQNSYK Unmodified 1244.586 0.58595803 1312 Karp_01264 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 46.698 46.873 2 5.851E-06 16752 20181213_JW_Orientia_Karp_1_2 169.76 120.34 34223000 11407000 10676000 10435000 0 1705700 0 0 0 6639 1312 5704 40254;40255;40256;40257 25706;25707;25708 25707 3 MTINFQNSYK Deamidation (NQ) 1245.57 0.56997362 1312 Karp_01264 yes yes 0 1 0 0 By MS/MS By MS/MS By matching 1 1 1 49.473 49.656 2 0.025919 18985 20181213_JW_Orientia_Karp_1_1 79.07 50.374 22089000 7972200 8403700 5712600 0 0 0 0 0 6640 1312 5704 40258;40259;40260 25709;25710 25709 739 1 MTISQQEFGR Oxidation (M) 1211.5605 0.56047157 1707 P55036;H0Y3Y9;Q5VWC4 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 1 0 By matching By MS/MS By MS/MS 1 1 1 35.072 35.476 2 0.0043728 9440 20181213_JW_Orientia_Karp_2_2 102.06 56.089 9722600 0 6455900 0 0 1316400 0 0 1950200 6641 1707 5705 40261;40262;40263 25711;25712 25711 1326 2 MTLAPGVDVQIN Oxidation (M) 1272.6384 0.63838754 1243 Karp_00910 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching 2 1 2 1 64.684 64.827 2 0.00091303 27913 20181213_JW_Orientia_Karp_1_3 132.78 72.979 60510000 39706000 3425500 17120000 0 0 0 0 257980 6642 1243 5706 40264;40265;40266;40267;40268;40269 25713;25714;25715 25715 805 3 MTLAPGVDVQIN Unmodified 1256.6435 0.64347291 1243 Karp_00910 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 72.377 72.427 2 2.8955E-05 32936 20181213_JW_Orientia_Karp_1_3 172.56 101.65 206800000 60402000 12272000 56963000 0 14701000 8027700 54438000 0 6643 1243 5706 40270;40271;40272;40273;40274;40275 25716;25717;25718;25719;25720;25721;25722 25719 7 MTLDDFR Oxidation (M) 912.40112 0.40111738 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 1 39.803 40.117 2 0.0087516 12387 20181213_JW_Orientia_Karp_3_1 143.85 84.213 1814900000 257360000 154910000 443300000 403810000 101820000 16285000 424800000 12605000 + 6644 1653 5707 40276;40277;40278;40279;40280;40281;40282;40283;40284;40285;40286;40287;40288;40289;40290 25723;25724;25725;25726;25727;25728 25728 1272 6 MTLDDFR Unmodified 896.4062 0.40620276 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.072 49.413 2 0.0052695 17151 20181213_JW_Orientia_Karp_2_1 162.31 98.999 804890000 211060000 194870000 125370000 254370000 0 0 0 19212000 + 6645 1653 5707 40291;40292;40293;40294;40295;40296;40297 25729;25730;25731;25732;25733;25734;25735 25732 7 MTNGFSGADLTEICQR Oxidation (M);Deamidation (NQ) 1815.7767 0.77674829 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 1 1 0 By MS/MS By matching 1 1 56.087 56.186 2 0.019567 23248 20181213_JW_Orientia_Karp_1_1 89.747 29.839 20519000 10663000 0 9856300 0 0 0 0 0 6646 1708 5708 40298;40299 25736 25736 1129 1331 1 MTNLTMQLREREK Oxidation (M);2 Deamidation (NQ) 1666.8018 0.80184082 2043 yes no 0 2 1 2 By MS/MS 1 21.481 21.731 3 0.042987 4349 20181213_JW_Orientia_Karp_1_2 42.809 28.85 253010 0 253010 0 0 0 0 0 0 + 6647 2043 5709 40300 25737 25737 0 MTRPELAILLSYSK Unmodified 1620.8909 0.89091383 1449 Karp_02529 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.404 59.646 3 0.0047235 22668 20181213_JW_Orientia_Karp_2_2 111.83 55.28 149720000 88810000 0 29421000 0 12658000 16196000 0 2635700 6648 1449 5710 40301;40302;40303;40304;40305 25738;25739;25740;25741;25742 25740 5 MTRPELAILLSYSK Oxidation (M) 1636.8858 0.88582845 1449 Karp_02529 yes yes 0 0 1 1 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 57.049 57.431 3 0.0010551 21757 20181213_JW_Orientia_Karp_2_1 130.47 79.25 41376000 0 5546400 0 862760 9979300 17431000 0 7556500 6649 1449 5710 40306;40307;40308;40309;40310;40311 25743;25744;25745 25743 1056 3 MTTFLNINQIR Acetyl (Protein N-term);Oxidation (M);3 Deamidation (NQ) 1410.6701 0.67008159 1382 Karp_02121 yes yes 1 3 1 0 By MS/MS By MS/MS 1 1 75.46 75.46 2 0.023854 35323 20181213_JW_Orientia_Karp_1_2 54.982 9.9594 26979000 0 12486000 0 0 0 14493000 0 0 6650 1382 5711 40312;40313 25746;25747 25746 872;873;1860 981 2 MTVGFNSDISSVVRVNTTNCHK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 2525.1526 0.15263719 334 A8K0W1;Q9BZA8-3 yes no 1 2 1 1 By MS/MS By matching By matching 1 1 1 77.615 77.565 2 0.018299 31695 20181213_JW_Orientia_Karp_2_2 49.216 8.336 21247000 0 0 0 0 6152500 5730900 9363700 0 6651 334 5712 40314;40315;40316 25748 25748 125;126 223 1 MTYQSIAIVFGPTLLKPEK Deamidation (NQ) 2136.1541 0.15406439 518 Q9NV28;D3DRX4;Q1RLN5;B3KR88;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 ARHGAP12 Rho GTPase-activating protein 12 yes no 0 1 0 1 By MS/MS 1 67.598 67.846 2 0.011224 27194 20181213_JW_Orientia_Karp_2_1 103.97 46.408 0 0 0 0 0 0 0 0 0 6652 518 5713 40317 25749 25749 1491 1 MVAAATNNLCEAANAAVQGHASQEK Oxidation (M) 2571.1806 0.18058328 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 By MS/MS By matching 1 1 43.197 43.778 3 0.01265 14260 20181213_JW_Orientia_Karp_3_1 57.826 34.496 5110700 0 0 0 0 0 0 3993800 1116900 6653 2016 5714 40318;40319 25750 25750 1542 1 MVAANAIR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 903.4484 0.44840192 2065 U3KQM3 yes yes 1 1 1 0 By MS/MS 1 50.679 51.228 2 0.023987 18166 20181213_JW_Orientia_Karp_2_1 71.949 11.267 1255100 0 0 0 1255100 0 0 0 0 6654 2065 5715 40320 25751 25751 1253 1564 0 MVATLDTQIADDAELQK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1920.8874 0.88740417 1913 Q8NI35-5 yes yes 1 2 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 53.64 54.04 2 0.029276 19164 20181213_JW_Orientia_Karp_3_1 47.991 13.813 25423000 0 6233900 8048500 4830800 5212100 0 1097300 0 6655 1913 5716 40321;40322;40323;40324;40325 25752 25752 2047;2048 0 MVDDYYSGNNQCTDEIR Oxidation (M) 2094.8259 0.82588332 1170 Karp_00624 yes yes 0 0 1 0 By MS/MS 1 41.811 42.161 2 9.5883E-06 14112 20181213_JW_Orientia_Karp_1_2 173.06 151.43 0 0 0 0 0 0 0 0 0 6656 1170 5717 40326 25753 25753 719 1 MVDDYYSGNNQCTDEIRK Oxidation (M) 2222.9208 0.92084634 1170 Karp_00624 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 35.352 35.714 3 0.011477 10573 20181213_JW_Orientia_Karp_1_3 70.134 54.979 59351000 17210000 10224000 16098000 0 0 0 14021000 1798400 6657 1170 5718 40327;40328;40329;40330;40331 25754;25755;25756;25757;25758 25756 719 5 MVDDYYSGNNQCTDEIRK Unmodified 2206.9259 0.92593172 1170 Karp_00624 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 37.87 38.246 3 0.027871 12062 20181213_JW_Orientia_Karp_1_2 58.079 42.195 31085000 3916700 7938800 11704000 700570 0 0 6309900 515110 6658 1170 5718 40332;40333;40334;40335;40336;40337 25759;25760 25759 2 MVDDYYSGNNQCTDEIRK Oxidation (M);Deamidation (NQ) 2223.9049 0.90486193 1170 Karp_00624 yes yes 0 1 1 1 By MS/MS By MS/MS By matching 1 1 1 37.532 37.932 3 0.019606 11655 20181213_JW_Orientia_Karp_1_3 64.04 40.813 15625000 0 3028500 11311000 0 0 0 1286000 0 6659 1170 5718 40338;40339;40340 25761;25762 25762 571;572;1816 719 0 MVEEVQK Unmodified 861.4266 0.42660385 734 B7Z982;O43660-2;O43660 PLRG1 Pleiotropic regulator 1 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 14.915 15.139 2 0.01246 2212 20181213_JW_Orientia_Karp_2_1 129.96 0 34563000 12486000 12770000 7641500 1665300 0 0 0 0 6660 734 5719 40341;40342;40343;40344 25763;25764 25764 2 MVEVQLETQYQYPR Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1842.8346 0.83458074 641 B4DUB4 yes yes 1 2 1 0 By matching By MS/MS By matching 1 1 1 20.93 21.348 3 0.02833 4004 20181213_JW_Orientia_Karp_2_3 46.88 7.1949 3972100 0 0 0 0 204750 1836900 1930500 0 6661 641 5720 40345;40346;40347 25765 25765 1551;1552 1 MVGDVTGAQAYASTAK Unmodified 1568.7505 0.75045718 61;914;1865 A0A024R210;H7BYV1;E9PQN9;H9NL12;P13164;Q01629;E9PS44;H9NL19;H9NKY4;Q01628;Q6IBB0 IFITM1;IFITM2;IFITM3 Interferon-induced transmembrane protein 1;Interferon-induced transmembrane protein 2;Interferon-induced transmembrane protein 3 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 43.286 43.551 2 3.7261E-09 14784 20181213_JW_Orientia_Karp_1_2 188.09 139.09 53177000 14329000 18636000 19234000 0 0 0 0 978090 6662 61;914;1865 5721 40348;40349;40350;40351 25766;25767 25767 2 MVGDVTGAQAYASTAK Oxidation (M) 1584.7454 0.7453718 61;914;1865 A0A024R210;H7BYV1;E9PQN9;H9NL12;P13164;Q01629;E9PS44;H9NL19;H9NKY4;Q01628;Q6IBB0 IFITM1;IFITM2;IFITM3 Interferon-induced transmembrane protein 1;Interferon-induced transmembrane protein 2;Interferon-induced transmembrane protein 3 no no 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1 1 39.805 40.131 2 4.5569E-21 12942 20181213_JW_Orientia_Karp_1_2 225.33 160.6 76836000 20416000 16572000 27170000 3955700 0 2707400 3989300 2025300 6663 61;914;1865 5721 40352;40353;40354;40355;40356;40357;40358;40359 25768;25769 25768 64 2 MVGGEAAAAVEELVSGVR Acetyl (Protein N-term);Oxidation (M) 1801.888 0.88801329 1940 Q96HQ2-2;Q96HQ2 CDKN2AIPNL CDKN2AIP N-terminal-like protein yes no 1 0 1 0 By MS/MS 1 77.669 77.619 2 0.01966 31939 20181213_JW_Orientia_Karp_2_3 77.74 31.85 0 0 0 0 0 0 0 0 0 6664 1940 5722 40360 25770 25770 1509 1 MVGGVLVER Oxidation (M) 974.5219 0.52190122 440 B1AQP2;Q9UHV9 PFDN2 Prefoldin subunit 2 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.676 39.01 2 0.010539 11930 20181213_JW_Orientia_Karp_2_3 88.819 38.116 52290000 13709000 12957000 6125600 10269000 0 2090700 7137500 0 6665 440 5723 40361;40362;40363;40364;40365;40366 25771;25772;25773;25774;25775 25774 291 5 MVGGVLVER Unmodified 958.52699 0.52698659 440 B1AQP2;Q9UHV9 PFDN2 Prefoldin subunit 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 43.788 44.108 2 0.0027611 14383 20181213_JW_Orientia_Karp_3_1 114.89 48.465 47255000 18630000 13589000 0 9086100 2512300 0 3438700 0 6666 440 5723 40367;40368;40369;40370;40371 25776;25777;25778 25778 3 MVGGVTPGK Unmodified 844.44767 0.44767364 1120 Karp_00318 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 29.202 29.515 2 0.0091261 7670 20181213_JW_Orientia_Karp_1_2 95.815 44.48 25829000 12260000 10519000 0 0 1168600 976270 0 905420 6667 1120 5724 40372;40373;40374;40375;40376 25779;25780;25781;25782 25780 4 MVGGVTPGK Oxidation (M) 860.44259 0.44258826 1120 Karp_00318 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 23.643 24.061 2 0.024769 4406 20181213_JW_Orientia_Karp_2_2 78.149 34.032 42703000 0 18204000 4223500 4388600 4762300 0 6375800 4748800 6668 1120 5724 40377;40378;40379;40380;40381;40382 25783;25784 25783 647 2 MVGISADNTNDYESK Oxidation (M) 1658.7094 0.70938023 1126 Karp_00329 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 38.088 38.381 2 1.7582E-19 11845 20181213_JW_Orientia_Karp_1_3 217.12 180.45 98904000 20238000 14097000 30222000 5664700 16110000 0 12573000 0 6669 1126 5725 40383;40384;40385;40386;40387;40388;40389;40390 25785;25786;25787;25788;25789;25790;25791;25792 25787 660 8 MVGISADNTNDYESK Unmodified 1642.7145 0.7144656 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 42.651 42.961 2 2.3079E-113 14297 20181213_JW_Orientia_Karp_1_3 318.47 259.84 168290000 43502000 53675000 41730000 0 9791000 0 15872000 3719600 6670 1126 5725 40391;40392;40393;40394;40395;40396 25793;25794;25795;25796;25797;25798;25799;25800;25801 25795 9 MVGISADNTNDYESK Oxidation (M);Deamidation (NQ) 1659.6934 0.69339581 1126 Karp_00329 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.535 39.894 2 3.5591E-27 12439 20181213_JW_Orientia_Karp_2_3 228.62 184.08 64865000 0 16317000 15187000 6566800 4283600 13118000 9393000 0 6671 1126 5725 40397;40398;40399;40400;40401;40402;40403 25802;25803;25804;25805;25806;25807;25808 25806 512;513 660 7 MVGISADNTNDYESK Deamidation (NQ) 1643.6985 0.69848119 1126 Karp_00329 yes yes 0 1 0 0 By matching By MS/MS By MS/MS 1 1 1 44.356 44.539 2 5.1017E-05 15444 20181213_JW_Orientia_Karp_1_2 161.25 120.53 33843000 12271000 11287000 10285000 0 0 0 0 0 6672 1126 5725 40404;40405;40406 25809;25810 25809 512;513 2 MVIKQMLIR Acetyl (Protein N-term);2 Oxidation (M);Deamidation (NQ) 1205.6512 0.65120083 1874 Q6ZMU4 yes yes 1 1 2 1 By MS/MS 1 69.899 70.208 2 0.027729 27680 20181213_JW_Orientia_Karp_3_2 104.37 10.768 8575800 0 0 0 0 0 0 0 8575800 6673 1874 5726 40407 25811 25811 2014 1482;1483 0 MVLAAAGGVEHQQLLDLAQK Unmodified 2091.1147 0.11465919 1649 P31930;B4DUL5 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 1 1 1 56.073 56.413 3 0.0033859 23087 20181213_JW_Orientia_Karp_1_2 87.99 61.995 103540000 38921000 18451000 22381000 4070900 12070000 4998400 1339400 1312900 6674 1649 5727 40408;40409;40410;40411;40412;40413;40414;40415;40416 25812;25813;25814;25815;25816 25812 5 MVLENVKEMWTEVPK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1890.9107 0.91072257 1050 K7EJB5 SNRPD2 yes yes 1 1 1 1 By matching By matching By MS/MS 1 1 1 76.546 76.548 2 0.027842 30966 20181213_JW_Orientia_Karp_3_2 54.784 13.675 3706400 0 0 0 1552100 1762900 0 0 391420 6675 1050 5728 40417;40418;40419 25817 25817 389 573 0 MVLNDVYR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1067.4957 0.49574604 613 B4DPH5;B4DP01 yes no 1 1 1 0 By matching By MS/MS 1 1 42.964 43.189 2 0.031761 14222 20181213_JW_Orientia_Karp_2_3 55.441 22.629 6686300 0 0 6290100 0 0 396180 0 0 6676 613 5729 40420;40421 25818 25818 217 0 MVNHFIAEFK Oxidation (M) 1250.6118 0.61177885 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;B4E1Q1;E9PN89;A8K7Q2 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 41.239 41.476 3 0.042514 14237 20181213_JW_Orientia_Karp_1_1 66.92 38.123 38418000 16041000 11279000 0 5737000 5360700 0 0 0 6677 1586 5730 40422;40423;40424;40425 25819 25819 1 MVNHFIAEFK Unmodified 1234.6169 0.61686423 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;B4E1Q1;E9PN89;A8K7Q2 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 44.661 44.894 3 0.033049 15491 20181213_JW_Orientia_Karp_1_3 61.344 33.377 36991000 0 14487000 20926000 0 1578900 0 0 0 6678 1586 5730 40426;40427;40428 25820 25820 1 MVNRVQDHIQSR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1540.7416 0.74162383 1013 I1Z9G3 PFKFB1 yes yes 1 1 1 1 By MS/MS 1 72.426 72.524 2 0.027747 32960 20181213_JW_Orientia_Karp_1_3 57.55 12.392 0 0 0 0 0 0 0 0 0 6679 1013 5731 40429 25821 25821 371;1765 559 1 MVPAGMGAGLER 2 Oxidation (M) 1219.5689 0.56892776 1701 P52272-2;P52272;Q7KYM9;Q59ES8;M0QZM1;Q6P2D7;M0R2I7 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 32.142 32.515 2 0.004801 9525 20181213_JW_Orientia_Karp_1_1 102.06 63.975 62243000 11983000 17019000 9083100 1868500 1535800 0 17339000 3414500 6680 1701 5732 40430;40431;40432;40433;40434;40435;40436 25822;25823;25824;25825;25826;25827 25822 1320;1321 6 MVPAGMGAGLER Oxidation (M) 1203.574 0.57401314 1701 P52272-2;P52272;Q7KYM9;Q59ES8;M0QZM1;Q6P2D7;M0R2I7 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 36.258 36.441 2 0.037774 10954 20181213_JW_Orientia_Karp_1_3 71.349 35.015 49994000 19745000 19517000 10731000 0 0 0 0 0 6681 1701 5732 40437;40438;40439 25828 25828 1320;1321 1 MVPVENTEGPSLLNQK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1813.8768 0.87677991 1917 Q8TD20 SLC2A12 Solute carrier family 2, facilitated glucose transporter member 12 yes yes 1 1 1 0 By MS/MS By matching 1 1 74.837 74.837 2 0.0018946 34845 20181213_JW_Orientia_Karp_1_2 105.4 22.315 322240000 0 140680000 0 0 0 181550000 0 0 6682 1917 5733 40440;40441 25829 25829 1198;1199;2055 1499 1 MVPVENTEGPSLLNQK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1814.8608 0.86079549 1917 Q8TD20 SLC2A12 Solute carrier family 2, facilitated glucose transporter member 12 yes yes 1 2 1 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 75.883 75.89 2 0.0081117 28236 20181213_JW_Orientia_Karp_3_1 96.171 30.477 796720000 126710000 126390000 117760000 79490000 161800000 102070000 66151000 16352000 6683 1917 5733 40442;40443;40444;40445;40446;40447;40448;40449 25830;25831;25832 25831 1198;1199;2055 1499 3 MVQEAEK Unmodified 833.3953 0.39530372 1074;1586;369 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96BE0;Q96H53;E9PS65;Q9NZ87;Q9NWW3;E9PM13;A8K5I0;P08107-2;P08107;B4DFN9;B4DNT8;B4E388;B4DI39;B4DWK5;B4E1T6;B4DNX1;B4DVU9;B4E1S9;V9GZ37;B3KTT5;Karp_00050 HEL-S-72p;HSPA8;HEL-S-103;HSPA1A Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1A no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 17.342 17.516 2 0.015872 2938 20181213_JW_Orientia_Karp_1_3 110.12 13.929 20369000 5400400 10864000 3554000 550700 0 0 0 0 6684 1586;369;1074 5734 40450;40451;40452;40453 25833;25834;25835 25835 3 MVQEAEK Oxidation (M) 849.39022 0.39021834 1074;1586;369 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96BE0;Q96H53;E9PS65;Q9NZ87;Q9NWW3;E9PM13;A8K5I0;P08107-2;P08107;B4DFN9;B4DNT8;B4E388;B4DI39;B4DWK5;B4E1T6;B4DNX1;B4DVU9;B4E1S9;V9GZ37;B3KTT5;Karp_00050 HEL-S-72p;HSPA8;HEL-S-103;HSPA1A Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1A no no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 2 1 8.1996 8.5368 2 0.0096004 1305 20181213_JW_Orientia_Karp_2_3 119.29 7.475 1071900 0 0 0 0 0 405330 0 666590 6685 1586;369;1074 5734 40454;40455;40456;40457 25836;25837;25838 25837 264 3 MVQLSADTLFDNGK Oxidation (M);Deamidation (NQ) 1554.7236 0.72357373 1169 Karp_00623 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 59.44 59.779 2 5.0079E-05 25538 20181213_JW_Orientia_Karp_1_1 166.6 122.41 89536000 21404000 18052000 15522000 11802000 11234000 9025500 2495800 0 6686 1169 5735 40458;40459;40460;40461;40462;40463;40464;40465;40466 25839;25840;25841;25842;25843;25844;25845;25846;25847 25840 566 710 8 MVQLSADTLFDNGK Deamidation (NQ) 1538.7287 0.72865911 1169 Karp_00623 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 63.505 63.765 2 3.2538E-17 27707 20181213_JW_Orientia_Karp_1_2 215.02 168.56 92083000 40547000 32658000 9394700 2452700 0 1709200 297040 5024500 6687 1169 5735 40467;40468;40469;40470;40471;40472;40473 25848;25849;25850 25849 566 3 MVQLSADTLFDNGKR Oxidation (M);Deamidation (NQ) 1710.8247 0.82468476 1169 Karp_00623 yes yes 0 1 1 1 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 51.497 51.81 3 0.0035584 18471 20181213_JW_Orientia_Karp_2_2 101.72 39.681 31707000 11681000 0 0 8256800 4298400 7278200 0 192640 6688 1169 5736 40474;40475;40476;40477;40478 25851;25852;25853 25852 566 710 3 MVQLSADTLFDNGKR Deamidation (NQ) 1694.8298 0.82977013 1169 Karp_00623 yes yes 0 1 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 55.098 55.298 3 0.0034491 22777 20181213_JW_Orientia_Karp_1_1 103.88 40.148 39966000 10991000 9619900 15489000 0 0 3866500 0 0 6689 1169 5736 40479;40480;40481;40482 25854;25855 25854 566 2 MVSALQQQQQQQQR 5 Deamidation (NQ) 1704.7625 0.76247843 49 B4E231;A0A024R1N5;H0Y720;A0A024R1T4;Q9UPQ9-2;Q9UPQ9-1;Q9UPQ9 TNRC6B Trinucleotide repeat-containing gene 6B protein yes no 0 5 0 0 By MS/MS By matching 1 1 44.475 44.806 2 0.033928 14594 20181213_JW_Orientia_Karp_2_2 50.791 9.7973 2124800 0 0 0 0 1749000 0 0 375800 6690 49 5737 40483;40484 25856 25856 1264;1265;1266;1267;1268;1269 1 MVSDINNAWGCLEQVEK Oxidation (M) 2007.903 0.90301143 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;Q86TX4 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 By MS/MS 1 60.357 60.357 2 0.006323 25871 20181213_JW_Orientia_Karp_1_1 118.16 62.905 0 0 0 0 0 0 0 0 0 6691 133 5738 40485 25857 25857 119 1 MVSDINNGWQHLEQAEK Deamidation (NQ) 1998.9105 0.91053965 1509 O43707;O43707-2;Q96BG6;B4E337 ACTN4 Alpha-actinin-4 yes no 0 1 0 0 By matching By MS/MS By matching 1 1 1 50.131 50.313 3 0.035248 18938 20181213_JW_Orientia_Karp_1_2 74.853 46.273 93063000 38446000 25834000 28782000 0 0 0 0 0 6692 1509 5739 40486;40487;40488 25858 25858 1015 1 MVSDINNGWQHLEQAEK Oxidation (M);Deamidation (NQ) 2014.9055 0.90545427 1509 O43707;O43707-2;Q96BG6;B4E337 ACTN4 Alpha-actinin-4 yes no 0 1 1 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 47.139 47.473 3 0.0070733 16843 20181213_JW_Orientia_Karp_1_3 88.951 40.223 122520000 36345000 49751000 20826000 5030800 0 10271000 294180 0 6693 1509 5739 40489;40490;40491;40492;40493;40494 25859 25859 1015 1118 1 MVSSNIIAIASDQK Unmodified 1475.7654 0.76537896 1183 Karp_00671 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 54.062 54.402 2;3 0.017074 22193 20181213_JW_Orientia_Karp_1_1 87.831 21.641 45729000 10090000 0 0 8676000 17641000 9028700 293770 0 6694 1183 5740 40495;40496;40497;40498;40499;40500 25860;25861 25860 2 MVSSNIIAIASDQK Oxidation (M) 1491.7603 0.76029359 1183 Karp_00671 yes yes 0 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 50.756 51.094 2 0.038421 18148 20181213_JW_Orientia_Karp_2_2 69.229 34.842 22186000 9271100 0 0 5075500 3301800 0 4537400 0 6695 1183 5740 40501;40502;40503;40504 25862 25862 1 MVVNEGSDGGQSVYHVHLHVLGGR Oxidation (M) 2562.2398 0.23975313 1687 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 1 0 By MS/MS By matching 1 1 41.606 41.781 4 0.016187 14455 20181213_JW_Orientia_Karp_1_1 54.668 32.803 77195000 45524000 31671000 0 0 0 0 0 0 6696 1687 5741 40505;40506 25863 25863 1302 1 MVVNEGSDGGQSVYHVHLHVLGGR Unmodified 2546.2448 0.24483851 1687 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 44.139 44.429 4 0.027806 15408 20181213_JW_Orientia_Karp_1_2 46.415 24.612 107520000 43168000 31071000 21219000 0 0 1948600 10113000 0 6697 1687 5741 40507;40508;40509;40510;40511 25864 25864 1 MWNISDVYDLVK Oxidation (M) 1497.7174 0.71736614 1139 Karp_00451 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.48 72.53 2 5.7779E-12 26686 20181213_JW_Orientia_Karp_3_1 208.56 112.78 284360000 98656000 47542000 50252000 0 28104000 22778000 37030000 0 6698 1139 5742 40512;40513;40514;40515;40516;40517;40518;40519 25865;25866;25867;25868;25869;25870;25871;25872 25871 674 8 MWNISDVYDLVK Unmodified 1481.7225 0.72245152 1139 Karp_00451 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 73.619 73.66 2 0.01298 34073 20181213_JW_Orientia_Karp_1_2 92.943 55.468 79627000 40156000 13372000 21322000 1612200 0 0 0 3165600 6699 1139 5742 40520;40521;40522;40523;40524 25873;25874;25875 25873 3 MWPQDPSR Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1074.444 0.44404482 910 E9PQC7;X1WI27;Q9NUD9 PIGV GPI mannosyltransferase 2 yes no 1 1 1 0 By matching By MS/MS 1 2 19.102 19.326 3 0.039815 15537 20181213_JW_Orientia_Karp_2_1 40.067 11.371 235600 0 0 171560 64035 0 0 0 0 6700 910 5743 40525;40526;40527 25876;25877 25876 1710 1 MYAQPVTNTK Oxidation (M);Deamidation (NQ) 1168.5434 0.54342452 174 A0A024R900;Q92535 PIGC Phosphatidylinositol N-acetylglucosaminyltransferase subunit C yes no 0 1 1 0 By matching By MS/MS 1 1 12.701 13.052 2 0.012157 2170 20181213_JW_Orientia_Karp_3_1 95.909 13.631 1332700 0 0 0 0 0 263670 1069000 0 6701 174 5744 40528;40529 25878 25878 68 137 1 MYFPDVEFDIK Unmodified 1402.6479 0.64788959 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 71.52 71.598 2 0.0052662 26071 20181213_JW_Orientia_Karp_3_1 104.22 69.689 51070000 19411000 8722900 7032200 2006000 2738500 2744200 8414900 0 6702 1782 5745 40530;40531;40532;40533;40534;40535;40536 25879;25880;25881;25882 25882 4 MYFPDVEFDIK Oxidation (M) 1418.6428 0.64280421 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 67.087 67.297 2 0.011173 26010 20181213_JW_Orientia_Karp_3_2 90.15 45.773 25242000 4591600 0 8166300 0 5420100 2876000 180130 4007700 6703 1782 5745 40537;40538;40539;40540;40541;40542 25883;25884;25885 25884 1428 3 MYFVGQPSVMAK Unmodified 1356.657 0.65701449 1322 Karp_01288 yes yes 0 0 0 0 By MS/MS 1 54.386 54.736 2 0.036274 21927 20181213_JW_Orientia_Karp_1_2 88.056 16.833 0 0 0 0 0 0 0 0 0 6704 1322 5746 40543 25886 25886 1 MYGISLCQAILDETK Oxidation (M) 1756.8376 0.83755763 1548 Q5TZZ9;P04083;B5BU38;Q05BR2 ANXA1 Annexin;Annexin A1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 64.803 65.035 2 5.2957E-05 28435 20181213_JW_Orientia_Karp_1_2 155.14 116.43 27548000 8407200 7502700 0 1976100 7805800 0 0 1856100 6705 1548 5747 40544;40545;40546;40547;40548;40549 25887;25888;25889;25890;25891 25888 1152 5 MYGISLCQAILDETK Unmodified 1740.8426 0.84264301 1548 Q5TZZ9;P04083;B5BU38;Q05BR2 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 67.842 68.035 2 8.0005E-09 24038 20181213_JW_Orientia_Karp_3_1 188.09 151.42 58043000 16673000 0 14449000 0 5022600 2308500 14386000 5204200 6706 1548 5747 40550;40551;40552;40553;40554;40555;40556;40557 25892;25893;25894;25895;25896;25897;25898 25897 7 MYIEAGNHR Oxidation (M) 1105.4975 0.49747738 1578 P09914-2;P09914 IFIT1 Interferon-induced protein with tetratricopeptide repeats 1 yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 20.661 20.891 2 0.012507 4126 20181213_JW_Orientia_Karp_1_2 87.181 45.072 3679600 905330 1323000 895470 0 0 157810 397910 0 6707 1578 5748 40558;40559;40560;40561;40562 25899;25900 25899 1201 2 MYQAIIR Oxidation (M) 909.47422 0.47422274 1170 Karp_00624 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 36.155 36.476 2 0.015642 11744 20181213_JW_Orientia_Karp_1_1 104.11 45.13 52069000 18426000 14024000 7340600 4161200 1699400 1891600 4526500 0 6708 1170 5749 40563;40564;40565;40566;40567;40568;40569 25901 25901 720 1 MYQAIIR Unmodified 893.47931 0.47930812 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 40.545 40.845 2 0.01397 13889 20181213_JW_Orientia_Karp_1_1 114.02 55.362 65049000 23884000 16267000 15968000 0 0 0 8929900 0 6709 1170 5749 40570;40571;40572;40573 25902;25903;25904 25902 3 MYSYPAR Oxidation (M) 902.39564 0.39563807 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575;D3DPI2;P07910-3;G3V5V7;B4DQQ2;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V2D6 HNRNPC;hCG_1641229 Heterogeneous nuclear ribonucleoproteins C1/C2 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 2 1 28.058 28.451 2 0.011556 6765 20181213_JW_Orientia_Karp_2_1 114.19 85.931 106300000 11709000 19797000 24162000 6339200 16026000 6651000 15949000 5666100 6710 400;452 5750 40574;40575;40576;40577;40578;40579;40580;40581;40582;40583;40584 25905;25906;25907;25908;25909;25910;25911;25912 25908 275 8 NAAALSQALR Unmodified 1013.5618 0.56179219 970 H0YE28;Q8IZQ5 C11orf31;SELH Selenoprotein H yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 38.152 38.462 2 9.5073E-05 12649 20181213_JW_Orientia_Karp_1_1 148.94 71.224 13691000 3963300 0 6725600 764910 758700 0 1478500 0 6711 970 5751 40585;40586;40587;40588;40589 25913 25913 1 NAAIAVLEELK Unmodified 1169.6656 0.66558856 372 B3KRE0;Q5JW30;A8K622;Q59F99;O95793-2;O95793-3;O95793;Q6PJX3;Q5JW28 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 0 By MS/MS 1 61.393 61.592 2 0.014958 26010 20181213_JW_Orientia_Karp_1_3 107.03 56.832 0 0 0 0 0 0 0 0 0 6712 372 5752 40590 25914 25914 1 NAAQLMLSTVFANSK Deamidation (NQ) 1594.8025 0.80249275 1195 Karp_00807 yes yes 0 1 0 0 By matching By matching By MS/MS 1 1 1 69.07 69.253 2 0.02928 24762 20181213_JW_Orientia_Karp_3_1 88.163 40.072 3320100 0 0 0 854340 0 795970 1669800 0 6713 1195 5753 40591;40592;40593 25915 25915 612 1 NADPILISLK Unmodified 1082.6336 0.63356015 225 B7Z9V0;B4E3S0;B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;Q9ULV4-2;Q9ULV4-3;H0YHL7 CORO1C Coronin;Coronin-1C yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 57.738 57.949 2 0.0076884 24476 20181213_JW_Orientia_Karp_1_1 97.597 48.155 76465000 19332000 37642000 10659000 0 4368500 4463400 0 0 6714 225 5754 40594;40595;40596;40597;40598 25916;25917 25916 2 NAEHLSFAEIEMEISQLGK Unmodified 2145.0412 0.041219473 1417 Karp_02254 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 71.02 71.145 3 0.00026777 32501 20181213_JW_Orientia_Karp_1_2 115.57 72.2 33423000 0 6355300 6718900 1681100 5541800 2955000 10171000 0 6715 1417 5755 40599;40600;40601;40602;40603;40604 25918;25919;25920;25921;25922;25923;25924 25919 7 NAEPLINLDVNNPDFK Unmodified 1811.9054 0.90537792 1834 Q5RLJ0;Q549M8;Q9Y224;H0YJB9;G3V4C6 C14orf166 UPF0568 protein C14orf166 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 63.93 64.14 2 9.8278E-05 28196 20181213_JW_Orientia_Karp_1_1 151.54 92 48088000 20586000 13441000 4460000 1386500 0 6202200 0 2012600 6716 1834 5756 40605;40606;40607;40608;40609;40610 25925;25926 25925 2 NAESLIAQGFGQK Unmodified 1361.6939 0.69392858 1205 Karp_00841 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 51.421 51.766 2 1.1006E-11 20340 20181213_JW_Orientia_Karp_1_1 206.36 142.83 80605000 20606000 18388000 21141000 6824800 6816800 4917100 969890 940830 6717 1205 5757 40611;40612;40613;40614;40615;40616;40617;40618 25927;25928;25929;25930;25931;25932 25927 6 NAFACFDEEATGTIQEDYLR Unmodified 2349.0219 0.021940594 1831;1498 O14950;Q53HL1;J3QRS3;P19105;Q2F834 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 66.567 66.757 2;3 4.6608E-92 26199 20181213_JW_Orientia_Karp_2_2 301.48 249.54 46470000 6329300 0 5030300 3168700 15515000 2683600 0 13743000 6718 1498;1831 5758 40619;40620;40621;40622;40623;40624;40625;40626 25933;25934;25935;25936;25937;25938 25935 5 NAFVFLQYDKNFIQIR 4 Deamidation (NQ) 2018.9989 0.99894395 335 A8K0Y1;O60242 BAI3 Brain-specific angiogenesis inhibitor 3 yes no 0 4 0 1 By matching By matching By MS/MS 1 1 1 40.395 40.628 4 0.025879 12167 20181213_JW_Orientia_Karp_2_2 57.034 21.934 6831000 0 2575800 3366900 0 888350 0 0 0 6719 335 5759 40627;40628;40629 25939 25939 127;128;1390;1391 0 NAGGKEDVVVNELSK Deamidation (NQ) 1558.7839 0.7838658 1296 Karp_01187 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 4 2 3 4 2 39.478 39.833 2;3 1.0719E-11 15024 20181213_JW_Orientia_Karp_1_2 206.66 144.03 335560000 45670000 73564000 88673000 45475000 11598000 16222000 47968000 6388300 6720 1296 5760 40630;40631;40632;40633;40634;40635;40636;40637;40638;40639;40640;40641;40642;40643;40644;40645;40646;40647;40648;40649;40650;40651;40652;40653;40654 25940;25941;25942;25943;25944;25945;25946;25947;25948;25949;25950;25951;25952 25943 708;717 12 NAGGKEDVVVNELSK Unmodified 1557.7999 0.79985021 1296 Karp_01187 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 2 1 1 36.034 36.392 2;3 1.7773E-17 9922 20181213_JW_Orientia_Karp_2_2 228.38 167.74 1791500000 409760000 629980000 320320000 82768000 62142000 3624000 280080000 2831700 6721 1296 5760 40655;40656;40657;40658;40659;40660;40661;40662;40663;40664 25953;25954;25955;25956;25957;25958;25959 25958 7 NAGVEGSLIVEK Unmodified 1214.6507 0.65066678 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.812 44.112 2 3.9391E-05 15173 20181213_JW_Orientia_Karp_1_2 169.82 91.558 77822000 21700000 22112000 22043000 2174500 3289800 0 6502800 0 6722 81 5761 40665;40666;40667;40668;40669;40670;40671;40672 25960;25961;25962;25963;25964;25965;25966 25961 7 NAIANASTLAEVER Unmodified 1457.7474 0.74742071 984 H0YLR3;H0YMA0;Q53G61;Q53G21;P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 47.276 47.546 2 1.4342E-06 17225 20181213_JW_Orientia_Karp_1_2 179.59 140.71 30005000 8864000 12146000 5940100 1240400 0 1814700 0 0 6723 984 5762 40673;40674;40675;40676;40677 25967 25967 1 NAITGIEMTQK Oxidation (M);Deamidation (NQ) 1221.5911 0.59110299 1144 Karp_00459 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 2 2 1 1 44.667 44.968 2 0.00057507 16114 20181213_JW_Orientia_Karp_1_3 145.28 86.295 109050000 25945000 19111000 23971000 8532500 8621200 6867700 5140900 10861000 6724 1144 5763 40678;40679;40680;40681;40682;40683;40684;40685;40686;40687;40688 25968;25969;25970;25971;25972;25973;25974;25975;25976;25977 25971 536 678 10 NAITGIEMTQK Oxidation (M) 1220.6071 0.60708741 1144 Karp_00459 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 35.302 35.646 2 6.2345E-13 10510 20181213_JW_Orientia_Karp_1_3 215.83 166.4 690880000 203800000 138430000 108600000 0 71926000 0 135510000 32615000 6725 1144 5763 40689;40690;40691;40692;40693;40694 25978;25979;25980;25981;25982 25979 678 4 NAITGIEMTQK Unmodified 1204.6122 0.61217279 1144 Karp_00459 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.58 42.755 2 1.612E-07 13715 20181213_JW_Orientia_Karp_3_1 201.09 142.86 541190000 246450000 147840000 124230000 0 22669000 0 0 0 6726 1144 5763 40695;40696;40697;40698;40699;40700;40701 25983;25984;25985;25986 25985 4 NAKLIMNEINLKIK Oxidation (M);Deamidation (NQ) 1657.9437 0.94367768 1401 Karp_02198 yes yes 0 1 1 2 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 72.93 72.988 2 0.0092488 33250 20181213_JW_Orientia_Karp_1_3 120.27 28.803 278910000 69528000 0 71974000 7019100 36957000 18182000 54874000 20381000 6727 1401 5764 40702;40703;40704;40705;40706;40707;40708 25987;25988 25987 913;914 1009 0 NALANPLYCPDYR Unmodified 1565.7297 0.72966216 1621 P22695;H3BRG4;H3BSJ9;H3BP04 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 1 53.02 53.671 2 0.00040965 18919 20181213_JW_Orientia_Karp_3_1 155.97 97.599 508890 0 0 0 0 0 0 508890 0 6728 1621 5765 40709;40710 25989;25990 25990 2 NALESYAFNMK Unmodified 1286.5965 0.59652272 369 A8K5I0;P08107-2;P08107;B4DFN9;B4DNT8;Q59EJ3;B4E388;B4DI39;B4DWK5;B4E1T6;B4DNX1;B4DVU9;B4E1S9;V9GZ37;B3KTT5 HEL-S-103;HSPA1A Heat shock 70 kDa protein 1A no no 0 0 0 0 By MS/MS 1 53.141 53.141 2 0.0056887 21332 20181213_JW_Orientia_Karp_1_1 103.26 64.479 6482100 6482100 0 0 0 0 0 0 0 6729 369 5766 40711 25991 25991 1 NALGPGLSPELGPLPALR Unmodified 1770.9992 0.99921872 94 A0A024R4G1;Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 70.735 70.835 2 0.00017462 31851 20181213_JW_Orientia_Karp_1_3 134.06 111.58 26936000 6720700 8830300 5240600 0 0 0 6144000 0 6730 94 5767 40712;40713;40714;40715 25992;25993;25994 25994 3 NALLAHNIVPEDLGGETLVVPISALK Unmodified 2682.4956 0.4956167 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.281 72.368 3 0.00044488 32859 20181213_JW_Orientia_Karp_1_3 87.419 70.628 458760000 129170000 56547000 100290000 38551000 39485000 0 78232000 16485000 6731 1366 5768 40716;40717;40718;40719;40720;40721;40722 25995;25996;25997;25998;25999;26000;26001 25997 7 NALLQLTDSQIADVAR Unmodified 1726.9214 0.92136233 304 A4FU77;O75643;Q9P172;Q7L5W4;Q9UNV9;B4E0P5;A2RRQ7;B4E150 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 2 1 1 64.297 64.557 2 0.0062962 28409 20181213_JW_Orientia_Karp_1_2 131.66 92.039 16086000 3529400 11647000 0 803330 0 0 106650 0 6732 304 5769 40723;40724;40725;40726;40727 26002;26003 26003 0 NALLSLAK Unmodified 828.5069 0.50690308 1548 Q5TZZ9;P04083;B5BU38;B4DL19;Q5T3N1 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS 1 46.214 46.663 2 0.02676 15726 20181213_JW_Orientia_Karp_2_1 99.136 30.753 0 0 0 0 0 0 0 0 0 6733 1548 5770 40728 26004 26004 1 NALWHTGNTPGQVR Unmodified 1549.775 0.77497287 186 A0A024R9Q1;P07996;P07996-2;Q6MZL6;P35442 THBS1;DKFZp686G02190;THBS2 Thrombospondin-1;Thrombospondin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 35.732 36.126 3 0.0023423 10763 20181213_JW_Orientia_Karp_1_3 104.24 69.494 804310000 308830000 167860000 146540000 20559000 0 0 127050000 33479000 + 6734 186 5771 40729;40730;40731;40732;40733;40734 26005;26006;26007;26008;26009;26010;26011;26012 26007 8 NAMGSLASQATK Oxidation (M) 1193.571 0.57103625 1707 P55036;H0Y3Y9;Q5VWC4;H0Y561 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 24.3 24.675 2 1.6305E-08 5994 20181213_JW_Orientia_Karp_1_1 194.48 108.62 23946000 1473000 4028000 3366700 2073300 3771100 2036200 4560900 2636700 6735 1707 5772 40735;40736;40737;40738;40739;40740;40741;40742;40743 26013;26014;26015;26016;26017;26018;26019;26020;26021;26022 26013 1327 10 NAMNELQDELMTIRLR 2 Oxidation (M);2 Deamidation (NQ) 1979.9292 0.92922618 749 Q59FE7;O60447;B9A6J0 EVI5 Ecotropic viral integration site 5 protein homolog yes no 0 2 2 1 By MS/MS By matching By matching By matching 1 1 1 1 36.798 37.313 3 0.028734 11343 20181213_JW_Orientia_Karp_2_1 53.3 19.861 5541600000 0 0 0 2359200000 814370000 0 2035000000 333030000 6736 749 5773 40744;40745;40746;40747 26023 26023 243;244;1627 439;440 0 NAMNELQDELMTIRLR 2 Oxidation (M);Deamidation (NQ) 1978.9452 0.9452106 749 Q59FE7;O60447;B9A6J0 EVI5 Ecotropic viral integration site 5 protein homolog yes no 0 1 2 1 By MS/MS 1 36.216 36.467 2 0.022965 10687 20181213_JW_Orientia_Karp_2_3 72.152 12.313 0 0 0 0 0 0 0 0 0 6737 749 5773 40748 26024 26024 243;244;1627 439;440 1 NAMNINNDSVK Oxidation (M) 1234.5612 0.56119985 1061 Karp_00005 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 23.043 23.423 2 0.00061222 5057 20181213_JW_Orientia_Karp_1_2 133.23 59.979 8666900 0 3706100 1628400 953800 867880 609800 465500 435350 6738 1061 5774 40749;40750;40751;40752;40753;40754;40755 26025 26025 580 1 NANTFISPQQR Unmodified 1274.6367 0.63674805 207 A0A024RAX0;P08493;P08493-2 MGP Matrix Gla protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 36.964 37.277 2 0.00092761 11023 20181213_JW_Orientia_Karp_3_1 154.84 103.97 40328000 14551000 10955000 0 0 4668900 0 10153000 0 6739 207 5775 40756;40757;40758;40759 26026;26027;26028 26028 3 NAPAIIFIDELDAIAPK Unmodified 1809.9877 0.98765098 1708 V9HW80;P55072;Q96IF9;Q9HAP1 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 1 75.896 75.876 2;3 2.3114E-16 28507 20181213_JW_Orientia_Karp_3_1 206.49 130.16 247950000 71162000 0 79811000 7054000 16390000 8688400 52784000 12064000 6740 1708 5776 40760;40761;40762;40763;40764;40765;40766;40767;40768;40769;40770;40771;40772 26029;26030;26031;26032;26033;26034;26035;26036 26035 8 NAPCIVFIDEIDAVGR Unmodified 1787.8876 0.88761936 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.649 72.721 2 4.5113E-09 26806 20181213_JW_Orientia_Karp_3_1 186.56 124.42 279120000 73865000 34296000 44759000 20670000 0 16966000 59183000 29379000 6741 1458 5777 40773;40774;40775;40776;40777;40778;40779 26037;26038;26039;26040;26041;26042;26043 26042 7 NAPVVQINHDYYENLTNDK Unmodified 2246.0604 0.060375011 1408 Karp_02225 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 49.285 49.587 3 0.034987 18298 20181213_JW_Orientia_Karp_1_3 61.52 45.624 189120000 41130000 42553000 41457000 22435000 16611000 17773000 0 7159900 6742 1408 5778 40780;40781;40782;40783;40784;40785;40786 26044 26044 1 NAQLLKMLQEGEMKDK Oxidation (M);2 Deamidation (NQ) 1892.9223 0.92234989 1855 Q5VSY0-2;Q5VSY0 GKAP1 G kinase-anchoring protein 1 yes no 0 2 1 2 By matching By MS/MS 1 1 58.206 58.636 2 0.026154 20840 20181213_JW_Orientia_Karp_3_2 70.685 22.713 77763000 0 75209000 0 0 0 0 0 2553800 6743 1855 5779 40787;40788 26045 26045 1176;2006;2007 1469 0 NAQSLAVLIK Unmodified 1055.6339 0.63389451 1353 Karp_01624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.798 51.048 2 0.00077408 18224 20181213_JW_Orientia_Karp_2_3 128.86 60.877 63536000 12955000 14843000 9414700 9592700 5983800 10747000 0 0 6744 1353 5780 40789;40790;40791;40792;40793;40794;40795 26046;26047;26048;26049;26050;26051;26052 26051 7 NAQTMAPR Acetyl (Protein N-term);Deamidation (NQ) 930.42292 0.42291545 1467 L8E8J9 PRDM11 yes yes 1 1 0 0 By MS/MS 1 64.672 64.672 1 0.037542 29156 20181213_JW_Orientia_Karp_1_1 46.37 26.667 84614000 84614000 0 0 0 0 0 0 0 6745 1467 5781 40796 26053 26053 1886 0 NATAAMKNQVAR Oxidation (M);3 Deamidation (NQ) 1292.6031 0.60306466 421 D1LUZ7;D1LUZ6;U5P039;A8MZI9;H9KVB1;Q2TAM6;Q01196-6;Q01196-5;Q01196-7;Q01196-3;Q01196-4;Q01196-11;Q01196;Q01196-9;Q01196-10;Q01196-2;Q01196-8 RUNX1/C20orf112 fusion;RUNX1 Runt-related transcription factor 1 yes no 0 3 1 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 48.745 49.097 2 0.02463 16893 20181213_JW_Orientia_Karp_2_2 96.034 36.684 202790000 0 51410000 29586000 62510000 17072000 29188000 0 13021000 6746 421 5782 40797;40798;40799;40800;40801;40802 26054 26054 163;164;1443 284 1 NAVITVPAYFNDSQR Unmodified 1693.8424 0.84238373 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;B7Z4T3;Q2F839 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 59.403 59.663 2 0.018347 22833 20181213_JW_Orientia_Karp_2_1 86.313 43.595 58787000 23994000 17635000 0 3810000 6013400 7334000 0 0 6747 721 5783 40803;40804;40805;40806;40807 26055;26056 26056 2 NAVLPIEEAIK Unmodified 1195.6812 0.68123863 1398 Karp_02184 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 57.398 57.648 2 0.025671 23803 20181213_JW_Orientia_Karp_1_2 82.029 41.961 158700000 54780000 31855000 37843000 7690100 11698000 14831000 0 0 6748 1398 5784 40808;40809;40810;40811;40812;40813 26057;26058;26059;26060 26057 4 NAYAVLYDIILK Unmodified 1394.781 0.78095267 1772 Q6FHU3;Q06323;H0YKK6 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.472 73.489 2 3.1378E-05 27250 20181213_JW_Orientia_Karp_3_1 171.92 131.99 113390000 29276000 22182000 14459000 0 12585000 11515000 23372000 0 6749 1772 5785 40814;40815;40816;40817;40818;40819 26061;26062;26063;26064;26065;26066 26066 6 NCAGIDYR Unmodified 967.41816 0.41816443 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 2 3 3 3 30.467 30.945 2 0.0014958 8629 20181213_JW_Orientia_Karp_1_1 170.24 105.48 4733500000 1533400000 234680000 1350900000 319730000 183880000 122810000 492090000 496080000 6750 1371 5786 40820;40821;40822;40823;40824;40825;40826;40827;40828;40829;40830;40831;40832;40833;40834;40835;40836;40837;40838;40839 26067;26068;26069;26070;26071;26072;26073;26074;26075;26076;26077;26078;26079;26080 26067 14 NCAGIDYR Deamidation (NQ) 968.40218 0.40218001 1371 Karp_02001 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1 1 1 37.024 37.369 2 0.011615 10808 20181213_JW_Orientia_Karp_1_3 115.49 46.111 680070000 319470000 53879000 235540000 45861000 0 0 13978000 11343000 6751 1371 5786 40840;40841;40842;40843;40844;40845;40846;40847;40848;40849 26081;26082;26083;26084;26085;26086;26087;26088;26089 26084 840 9 NCHYTVNQSGETSLR Deamidation (NQ) 1765.769 0.76896079 2055 yes yes 0 1 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 1 1 1 57.458 57.765 2 0.0041761 23579 20181213_JW_Orientia_Karp_1_3 121.5 25.979 9806200000 2307600000 939370000 3517200000 0 2114700000 886240000 9015700 32116000 + 6752 2055 5787 40850;40851;40852;40853;40854;40855;40856;40857;40858 26090;26091 26090 1249 2 NDDGSTPLHHAAEK Unmodified 1490.675 0.67498405 1350 Karp_01526 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 19.029 19.262 3 0.0040249 3446 20181213_JW_Orientia_Karp_1_3 96.756 12.587 44464000 5825300 12824000 4294100 1052800 0 18924000 1543800 0 6753 1350 5788 40859;40860;40861;40862;40863;40864 26092;26093;26094;26095;26096;26097 26094 6 NDDGSTPLHHAAEK Deamidation (NQ) 1491.659 0.65899964 1350 Karp_01526 yes yes 0 1 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 22.837 23.169 3 0.035844 4839 20181213_JW_Orientia_Karp_3_1 76.868 11.059 10520000 939390 2493400 793380 1313700 948300 940170 2201500 890300 6754 1350 5788 40865;40866;40867;40868;40869;40870;40871;40872 26098 26098 1 NDEELNK Unmodified 860.38758 0.3875758 28;1602;1899 A3KPC7;A0A024RAS2;Q08AJ9;B2R5B3;A4FTV9;A0A024R017;Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;B4E0B3;B2R5B6;Q96QV6;Q9BTM1-2;P16104;Q8IUE6;A2RUA4 HIST1H2AH;H2AFJ;HIST1H2AB;HIST1H2AK;HIST1H2AC;HIST1H2AJ;HIST2H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AA;H2AFX;HIST2H2AB Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2AX;Histone H2A type 2-B no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 17.251 17.48 2 0.010511 3036 20181213_JW_Orientia_Karp_1_2 143.89 45.469 28563000 9963200 9355800 6677400 1082100 0 0 1484900 0 6755 28;1602;1899 5789 40873;40874;40875;40876;40877 26099;26100;26101;26102 26100 4 NDEELNK Deamidation (NQ) 861.37159 0.37159139 28;1602;1899 A3KPC7;A0A024RAS2;Q08AJ9;B2R5B3;A4FTV9;A0A024R017;Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;B4E0B3;B2R5B6;Q96QV6;Q9BTM1-2;P16104;Q8IUE6;A2RUA4 HIST1H2AH;H2AFJ;HIST1H2AB;HIST1H2AK;HIST1H2AC;HIST1H2AJ;HIST2H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AA;H2AFX;HIST2H2AB Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2AX;Histone H2A type 2-B no no 0 1 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 22.755 23.1 2 0.019223 5578 20181213_JW_Orientia_Karp_3_1 143.89 33.767 60696000 3583300 12900000 3233100 7012700 5697400 4573500 12696000 10999000 6756 28;1602;1899 5789 40878;40879;40880;40881;40882;40883;40884;40885;40886;40887;40888;40889;40890;40891;40892;40893 26103;26104;26105;26106;26107;26108;26109;26110;26111 26109 3;1193 9 NDEMEWYVILAALDLK Deamidation (NQ) 1922.9336 0.9335665 2052 yes no 0 1 0 0 By MS/MS 1 58.61 58.96 2 0.0073201 24632 20181213_JW_Orientia_Karp_1_2 136.81 29.463 0 0 0 0 0 0 0 0 0 + 6757 2052 5790 40894 26112 26112 1247 1 NDISITLPLQALNEIVK Unmodified 1880.0619 0.06187856 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 76.079 76.073 2 3.5553E-23 30808 20181213_JW_Orientia_Karp_3_2 217.19 159.01 95836000 29833000 10622000 11506000 6427400 5770200 4342800 20418000 6916500 6758 1058 5791 40895;40896;40897;40898;40899;40900;40901;40902 26113;26114;26115;26116;26117;26118;26119;26120;26121 26121 9 NDKGDITPLK Unmodified 1099.5873 0.58733824 1297 Karp_01188 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 2 2 2 2 28.118 28.469 2;3 0.00088856 6757 20181213_JW_Orientia_Karp_3_1 147.3 51.27 114540000 22324000 31456000 23030000 3113600 14214000 5109300 12028000 3260200 6759 1297 5792 40903;40904;40905;40906;40907;40908;40909;40910;40911;40912;40913;40914;40915;40916;40917 26122;26123;26124;26125;26126;26127;26128 26127 7 NDLAVVDVR Unmodified 999.53491 0.53490874 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338 NCL Nucleolin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 46.621 46.821 2 0.0017922 16042 20181213_JW_Orientia_Karp_2_3 120.45 48.127 16951000 8512600 5423700 0 0 0 3015100 0 0 6760 88 5793 40918;40919;40920;40921 26129;26130;26131 26131 3 NDLVEALK Unmodified 900.49165 0.49164694 467 B2R7T8;P47756-2;B1AK87;B1AK88;B4DWA6;Q7L4N0 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 45.967 46.167 2 0.0041589 16309 20181213_JW_Orientia_Karp_1_2 146.79 20.971 74088000 30247000 30734000 10050000 0 0 3056200 0 0 6761 467 5794 40922;40923;40924;40925 26132;26133 26133 2 NDPFALQR Unmodified 959.48248 0.48247924 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 44.226 44.502 2 0.0046798 13960 20181213_JW_Orientia_Karp_3_2 127.46 50.615 2778900000 1060000000 1131300000 557140000 0 0 28556000 0 1971400 6762 1074 5795 40926;40927;40928;40929;40930;40931;40932 26134;26135;26136;26137;26138 26138 5 NDPYHPDHFNCANCGK Unmodified 1944.7632 0.76316391 1680 P48059-3;P48059;P48059-4;P48059-2;P48059-5 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 28.246 28.558 3 0.035465 7138 20181213_JW_Orientia_Karp_1_3 49.066 39.661 11969000 0 0 6263000 1192800 3528900 983910 0 0 6763 1680 5796 40933;40934;40935;40936 26139 26139 1 NDQALQLTQMDKMHK 2 Oxidation (M);2 Deamidation (NQ) 1833.8237 0.82369848 636 B4DSR1;Q86Z20-2;Q86Z20 CCDC125 Coiled-coil domain-containing protein 125 yes no 0 2 2 1 By MS/MS 1 43.963 44.214 3 0.032041 14715 20181213_JW_Orientia_Karp_2_3 59.248 23.396 0 0 0 0 0 0 0 0 0 6764 636 5797 40937 26140 26140 220;1549;1550 1 NDQALQLTQMDKMHKK 2 Oxidation (M);2 Deamidation (NQ) 1961.9187 0.9186615 636 B4DSR1;Q86Z20-2;Q86Z20 CCDC125 Coiled-coil domain-containing protein 125 yes no 0 2 2 2 By MS/MS 1 38.202 38.202 3 0.032416 12465 20181213_JW_Orientia_Karp_1_1 53.981 21.68 0 0 0 0 0 0 0 0 0 6765 636 5798 40938 26141 26141 220;1549;1550 1 NDQALQLTQMDKMHKK 2 Oxidation (M);Deamidation (NQ) 1960.9346 0.93464591 636 B4DSR1;Q86Z20-2;Q86Z20 CCDC125 Coiled-coil domain-containing protein 125 yes no 0 1 2 2 By matching By matching By MS/MS 1 1 1 37.077 37.561 3 0.03444 10840 20181213_JW_Orientia_Karp_3_1 53.946 15.4 894020000 0 0 0 55245000 298980000 0 539800000 0 6766 636 5798 40939;40940;40941 26142 26142 220;1549;1550 0 NDQALYDYLLK Unmodified 1354.6769 0.67688153 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 63.917 64.132 2 7.7131E-10 27583 20181213_JW_Orientia_Karp_1_3 208.15 135.22 109100000 34797000 31122000 20842000 0 9300600 9617600 255260 3168300 6767 1262 5799 40942;40943;40944;40945;40946;40947;40948 26143;26144;26145;26146;26147 26145 5 NDQALYDYLLK Deamidation (NQ) 1355.6609 0.66089712 1262 Karp_01022 yes yes 0 1 0 0 By MS/MS By MS/MS 1 1 73.828 73.826 2 0.014427 33925 20181213_JW_Orientia_Karp_1_3 99.53 69.756 7679800 0 0 7679800 0 0 0 0 0 6768 1262 5799 40949;40950 26148;26149 26149 673 2 NDQDTWDYTNPNLSGQGDPGSNPNK Unmodified 2733.1539 0.15389406 477 B2R959;Q6NTA2;P14866;M0QXS5;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS 1 52.414 52.612 3 2.2458E-15 20326 20181213_JW_Orientia_Karp_1_3 171.9 151.91 11515000 0 0 11515000 0 0 0 0 0 6769 477 5800 40951 26150 26150 1 NDSDPTYGQQGHPNTWK Unmodified 1943.8398 0.83981755 730 B7Z871;B7ZLW0;Q93052;C9JXK9;C9JUT4 LPP Lipoma-preferred partner yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 31.551 31.839 3 0.010479 8807 20181213_JW_Orientia_Karp_1_2 77.068 55.469 11592000 4049800 4116200 0 2202400 1223600 0 0 0 6770 730 5801 40952;40953;40954;40955 26151;26152;26153 26152 3 NDTDLGK Deamidation (NQ) 762.33956 0.33956298 1375 Karp_02111 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching 1 2 1 1 26.04 26.412 1;2 0.026093 5184 20181213_JW_Orientia_Karp_2_2 113.41 10.638 12202000 0 0 860950 0 8998500 1775300 0 567280 6771 1375 5802 40956;40957;40958;40959;40960 26154;26155;26156 26154 867 2 NDTLLNYEQLLQR Unmodified 1618.8315 0.83148469 1267 Karp_01075 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 66.375 66.541 2 1.9518E-45 29653 20181213_JW_Orientia_Karp_1_1 260.6 193.27 60008000 16855000 12094000 14268000 0 8350700 4537600 3903400 0 6772 1267 5803 40961;40962;40963;40964;40965;40966 26157;26158;26159;26160;26161;26162 26157 6 NDTQIICTVMSYDPR Unmodified 1811.8182 0.81821917 1127 Karp_00330 yes yes 0 0 0 0 By matching By MS/MS 1 1 63.846 64.02 2 0.0021532 27516 20181213_JW_Orientia_Karp_1_3 122.66 77.584 14088000 0 3316900 10771000 0 0 0 0 0 6773 1127 5804 40967;40968 26163 26163 1 NDVDVLNLR Unmodified 1056.5564 0.55637247 1079 Karp_01488;Karp_02270;Karp_02061;Karp_01254;Karp_00697;Karp_00099 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 51.777 52.064 2 0.00082654 20297 20181213_JW_Orientia_Karp_1_2 134.23 81.442 25777000 8715800 11969000 0 3728100 0 1363800 0 0 6774 1079 5805 40969;40970;40971;40972 26164;26165 26165 2 NDVIQISMSNITQTYR Oxidation (M) 1897.9204 0.92037606 1393 Karp_02145 yes yes 0 0 1 0 By MS/MS By MS/MS 1 1 54.138 54.313 2 0.00084849 21970 20181213_JW_Orientia_Karp_1_1 127.78 91.099 22093000 14011000 8081700 0 0 0 0 0 0 6775 1393 5806 40973;40974 26166;26167 26166 990 2 NDVIQISMSNITQTYR Unmodified 1881.9255 0.92546143 1393 Karp_02145 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 63.77 63.886 2 0.0003747 27841 20181213_JW_Orientia_Karp_1_2 163.23 124.83 37959000 13855000 15690000 8413500 0 0 0 0 0 6776 1393 5806 40975;40976;40977 26168;26169 26169 2 NDVQNDVIVAAVESLIK Deamidation (NQ) 1826.9626 0.96255845 1252 Karp_00931 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 1 1 2 1 2 1 78.193 78.16 2 2.6468E-67 31130 20181213_JW_Orientia_Karp_3_2 272.74 177.12 70401000 20296000 17351000 6850900 3110300 6747000 2791100 10475000 2778800 6777 1252 5807 40978;40979;40980;40981;40982;40983;40984;40985;40986;40987;40988;40989 26170;26171;26172;26173 26173 658;659 4 NDVQNDVIVAAVESLIK 2 Deamidation (NQ) 1827.9466 0.94657403 1252 Karp_00931 yes yes 0 2 0 0 By MS/MS By matching 1 1 81.031 81.006 2 0.00037861 37932 20181213_JW_Orientia_Karp_1_1 138.01 94.469 8378300 6805500 1572800 0 0 0 0 0 0 6778 1252 5807 40990;40991 26174 26174 658;659 1 NDVQNDVIVAAVESLIK Unmodified 1825.9785 0.97854286 1252 Karp_00931 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 76.554 76.549 2 5.0278E-68 31083 20181213_JW_Orientia_Karp_2_2 281.93 224.05 144900000 32882000 19898000 16709000 13011000 13489000 9541900 34233000 5131100 6779 1252 5807 40992;40993;40994;40995;40996;40997;40998;40999 26175;26176 26175 2 NEAIQAAHDAVAQEGQCR Unmodified 1966.8915 0.89153554 845 V9HW74;D6R956;P09936;A6NLJ7;D6R974;B2RD14 HEL-117;UCHL1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 36.478 36.89 3 0.015205 11211 20181213_JW_Orientia_Karp_1_3 67.153 33.847 21693000 0 0 11212000 1878700 0 1089800 7512200 0 6780 845 5808 41000;41001;41002;41003 26177 26177 1 NEAISSDNVNEILHNLTEELIVETVHK Unmodified 3059.5411 0.54112292 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 74.234 74.273 4 0.036677 34472 20181213_JW_Orientia_Karp_1_1 40.706 20.72 67767000 33454000 22097000 11023000 0 0 0 0 1193100 6781 1374 5809 41004;41005;41006;41007 26178 26178 1 NECFLQHK Unmodified 1074.4917 0.49166372 620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;Q8IUK7;H7C013 ALB Serum albumin yes no 0 0 0 0 By MS/MS 1 25.518 25.518 2 0.011375 6409 20181213_JW_Orientia_Karp_1_1 101.6 42.786 2131700 2131700 0 0 0 0 0 0 0 + 6782 620 5810 41008 26179 26179 1 NECFLSHK Unmodified 1033.4651 0.46511462 792 CON__P02769 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 24.81 25.168 2 0.0013048 4687 20181213_JW_Orientia_Karp_3_2 176.44 106.82 51335000 6035600 4849800 3710500 7662200 6373400 1066300 12030000 9607200 + 6783 792 5811 41009;41010;41011;41012;41013;41014;41015;41016 26180 26180 1 NECMQGLEVIESTNLK Oxidation (M);3 Deamidation (NQ) 1882.8176 0.81761005 918 Q59FH1;H0Y4W2;F2Z2U4;Q9Y4A5-2;Q9Y4A5 TRRAP Transformation/transcription domain-associated protein yes no 0 3 1 0 By matching By MS/MS By matching 1 1 1 45.92 46.271 2 0.039974 15683 20181213_JW_Orientia_Karp_2_3 44.564 8.2604 17177000 0 0 0 0 3139200 13544000 494060 0 6784 918 5812 41017;41018;41019 26181 26181 1715 0 NEDITITEIENSLNSVITR Deamidation (NQ) 2161.075 0.075022022 1140 Karp_00452 yes yes 0 1 0 0 By matching By MS/MS By MS/MS 1 1 1 68.413 68.512 2 1.1897E-12 30317 20181213_JW_Orientia_Karp_1_3 191.37 143.66 6733800 3107800 0 3626100 0 0 0 0 0 6785 1140 5813 41020;41021;41022 26182;26183 26183 530;531 2 NEDITITEIENSLNSVITR Unmodified 2160.091 0.091006437 1140 Karp_00452 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 74.631 74.672 2 1.16E-05 34391 20181213_JW_Orientia_Karp_1_3 147.83 94.692 37874000 10348000 5696400 16329000 0 0 0 3371500 2129200 6786 1140 5813 41023;41024;41025;41026;41027 26184 26184 1 NEDQQQNLK 2 Deamidation (NQ) 1117.4887 0.48874641 1076;1146 Karp_00054;Karp_00221;Karp_01819;Karp_00953;Karp_00766;Karp_02014;Karp_02042;Karp_02450;Karp_01695;Karp_00972;Karp_02319;Karp_00143;Karp_02520;Karp_02433;Karp_01289;Karp_01072;Karp_00764;Karp_00498 no no 0 2 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 29.495 29.838 2 0.038268 8237 20181213_JW_Orientia_Karp_1_1 77.318 22.541 11288000 2855500 3549200 4044600 421370 268630 0 0 148260 6787 1076;1146 5814 41028;41029;41030;41031;41032;41033 26185 26185 1791;1792 0 NEEDAAELVALAQAVNAR Unmodified 1882.9385 0.93846896 42 A0A024R1A3;P22314-2;P22314 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 1 2 70.684 70.795 2;3 4.8994E-42 32166 20181213_JW_Orientia_Karp_1_2 247.17 175.61 106530000 13574000 40310000 25311000 0 2812400 1743800 22780000 0 6788 42 5815 41034;41035;41036;41037;41038;41039;41040;41041;41042 26186;26187;26188 26186 3 NEEEIAQVATVSSNGDR Deamidation (NQ) 1818.8232 0.82316443 1296 Karp_01187 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 4 5 4 3 4 46.99 47.31 2;3 1.7073E-215 15706 20181213_JW_Orientia_Karp_2_1 388.9 292.15 5701100000 1243300000 1256000000 1222100000 615520000 452410000 361060000 91848000 458940000 6789 1296 5816 41043;41044;41045;41046;41047;41048;41049;41050;41051;41052;41053;41054;41055;41056;41057;41058;41059;41060;41061;41062;41063;41064;41065;41066;41067;41068;41069;41070;41071;41072;41073;41074;41075 26189;26190;26191;26192;26193;26194;26195;26196;26197;26198;26199;26200;26201;26202;26203;26204;26205;26206;26207;26208;26209;26210 26198 714;715;1835 20 NEEEIAQVATVSSNGDR 2 Deamidation (NQ) 1819.8072 0.80718002 1296 Karp_01187 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 5 4 4 1 1 1 53.978 54.273 2 4.9457E-06 22143 20181213_JW_Orientia_Karp_2_1 171.08 127.54 229830000 74659000 74252000 51363000 10327000 0 10138000 5564500 3526900 6790 1296 5816 41076;41077;41078;41079;41080;41081;41082;41083;41084;41085;41086;41087;41088;41089;41090;41091;41092;41093;41094;41095 26211;26212;26213;26214;26215;26216;26217;26218;26219;26220;26221 26220 714;715;1835 9 NEEEIAQVATVSSNGDREIGEK Deamidation (NQ) 2375.1088 0.10884135 1296 Karp_01187 yes yes 0 1 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 46.13 46.464 3 3.6567E-08 15660 20181213_JW_Orientia_Karp_2_2 152.66 118.65 1101200000 86170000 182500000 499220000 18161000 67316000 100840000 41539000 105410000 6791 1296 5817 41096;41097;41098;41099;41100;41101;41102;41103;41104;41105;41106;41107;41108;41109 26222;26223;26224;26225;26226;26227;26228;26229;26230;26231;26232 26225 714;715;1835 9 NEFDVILATVPEK Unmodified 1473.7715 0.7715102 1171 Karp_00625 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 68.418 68.611 2 7.9268E-124 27323 20181213_JW_Orientia_Karp_2_1 336.33 204.02 8026800000 2285600000 996190000 1586900000 378660000 602480000 359060000 1203300000 614730000 6792 1171 5818 41110;41111;41112;41113;41114;41115;41116;41117;41118;41119;41120;41121 26233;26234;26235;26236;26237;26238;26239;26240;26241;26242;26243;26244;26245 26239 13 NEFDVILATVPEK Deamidation (NQ) 1474.7555 0.75552578 1171 Karp_00625 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 74.078 74.117 2 1.4252E-104 34434 20181213_JW_Orientia_Karp_1_3 322.7 210.6 1309200000 393940000 260700000 351050000 9434800 60923000 77070000 136130000 19915000 6793 1171 5818 41122;41123;41124;41125;41126;41127;41128;41129;41130;41131;41132;41133;41134 26246;26247;26248;26249;26250;26251;26252;26253;26254;26255;26256;26257 26250 574 10 NEFDVILATVPEKK Unmodified 1601.8665 0.86647322 1171 Karp_00625 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.39 58.663 3 0.000123 22462 20181213_JW_Orientia_Karp_2_3 153.32 108.76 141320000 65634000 20490000 0 0 13756000 33889000 0 7547100 6794 1171 5819 41135;41136;41137;41138;41139;41140 26258;26259;26260;26261;26262;26263 26262 6 NEGDNVEVGEVICIIR Unmodified 1814.8833 0.88326227 1417 Karp_02254 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 2 66.36 66.582 2;3 2.0337E-49 29654 20181213_JW_Orientia_Karp_1_1 265.77 171.23 95407000 24636000 16605000 15414000 7592200 14893000 5818600 2547600 7899900 6795 1417 5820 41141;41142;41143;41144;41145;41146;41147;41148;41149;41150 26264;26265;26266;26267;26268;26269;26270 26264 7 NEGSESAPEGQAQQR Unmodified 1586.6921 0.69209068 1745 P67809;Q6PKI6;Q05D43;C9J5V9;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 21.024 21.382 2 0.0037819 4102 20181213_JW_Orientia_Karp_2_3 142.83 73.006 3290300 602240 0 176360 1215800 372660 511700 268320 143220 6796 1745 5821 41151;41152;41153;41154;41155;41156;41157;41158 26271;26272;26273 26272 3 NEHDPDYSIATLIK Unmodified 1614.789 0.78895118 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 1 53.423 53.741 2;3 4.9185E-05 21256 20181213_JW_Orientia_Karp_1_2 180.3 100.13 585400000 128720000 105450000 156570000 58861000 53240000 74825000 5404700 2337700 6797 1320 5822 41159;41160;41161;41162;41163;41164;41165;41166;41167;41168;41169;41170;41171;41172 26274;26275;26276;26277;26278;26279;26280;26281 26276 8 NEHDPDYSIATLIK Deamidation (NQ) 1615.773 0.77296676 1320 Karp_01282 yes yes 0 1 0 0 By matching By MS/MS 1 1 61.472 61.572 3 0.014823 26028 20181213_JW_Orientia_Karp_1_3 93.237 35.139 6147100 2272200 0 3874800 0 0 0 0 0 6798 1320 5822 41173;41174 26282 26282 759 1 NEHNSILQSLLETLK Unmodified 1737.9261 0.92611336 569 Q7RTQ9;Q7RTQ7;G5E9S8;G3V2E7;B5BU63;F8W6L3;B4DGB3;Q7RTQ8;Q7RTQ2;G3V3H3;Q7RTQ1;Q7RTQ0;Q7RTQ4;G3V5R9;Q7RTP8;E7EVH7;B4DS14;Q07866-8;Q07866-2;Q07866-3;Q07866;Q07866-7;Q07866-5;Q07866-10;Q07866-6;Q07866-4;Q07866-9;G3V2P7;Q7Z5D5 KNS2;KLC1 Kinesin light chain 1 yes no 0 0 0 0 By MS/MS By matching 1 1 69.83 69.931 3 0.011066 27909 20181213_JW_Orientia_Karp_2_2 77.068 45.268 2762500 0 0 0 0 1877800 884640 0 0 6799 569 5823 41175;41176 26283 26283 1 NEIDNYEEDYQK Unmodified 1558.6423 0.64234652 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 1 40.307 40.307 2 0.0059874 13539 20181213_JW_Orientia_Karp_1_1 122.18 90.544 0 0 0 0 0 0 0 0 0 6800 506 5824 41177 26284 26284 1 NELAETLALLK Deamidation (NQ) 1214.6758 0.6758189 974 H7C306;Q05DG0;H0YER1;Q96T23-2;Q96T23 RSF1 Remodeling and spacing factor 1 yes no 0 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 59.332 59.675 2 0.0037953 21404 20181213_JW_Orientia_Karp_3_2 117.53 16.273 672790000 421730000 95955000 80027000 51254000 0 0 563710 23252000 6801 974 5825 41178;41179;41180;41181;41182;41183 26285 26285 343 1 NELISAILK Unmodified 999.59645 0.59644637 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.752 58.962 2 0.00015941 21039 20181213_JW_Orientia_Karp_3_2 178.55 79.918 166070000 47159000 71387000 27016000 0 9242900 11267000 0 0 6802 1333 5826 41184;41185;41186;41187;41188;41189 26286;26287;26288;26289;26290;26291 26291 6 NELQQTINK 2 Deamidation (NQ) 1088.535 0.53496832 332 Q05DQ6;A8K031;O14777 NDC80;KNTC2 Kinetochore protein NDC80 homolog yes no 0 2 0 0 By MS/MS By matching By matching By matching 1 1 1 1 25.946 26.324 3 0.040471 6206 20181213_JW_Orientia_Karp_1_3 69.598 25.249 4821000 0 0 2009700 0 1117600 409670 0 1284100 6803 332 5827 41190;41191;41192;41193 26292 26292 1389 0 NELSANIVYK Unmodified 1149.603 0.60298831 1099 Karp_00263 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 44.361 44.681 2 6.8971E-06 15513 20181213_JW_Orientia_Karp_1_2 179.37 81.807 220200000 34058000 96162000 40095000 5603200 14389000 13998000 13201000 2697200 6804 1099 5828 41194;41195;41196;41197;41198;41199;41200;41201 26293;26294;26295;26296;26297;26298;26299;26300;26301 26294 9 NEMLTLVGQLR Oxidation (M) 1288.6809 0.68092105 1100 Karp_00268 yes yes 0 0 1 0 By MS/MS By matching By matching 1 1 1 52.924 53.157 2 0.002504 20976 20181213_JW_Orientia_Karp_1_2 113.63 58.08 19606000 0 10388000 5246700 0 3971500 0 0 0 6805 1100 5829 41202;41203;41204 26302 26302 619 1 NEMLTLVGQLR Unmodified 1272.686 0.68600643 1100 Karp_00268 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 61.287 61.537 2 3.3581E-06 25975 20181213_JW_Orientia_Karp_1_3 178.54 96.302 20739000 7796200 3826400 3483200 733820 3098700 1800300 0 0 6806 1100 5829 41205;41206;41207;41208;41209;41210 26303;26304 26304 2 NENIVYVGDLVAR Unmodified 1460.7623 0.7623425 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.529 59.822 2 3.4338E-17 23062 20181213_JW_Orientia_Karp_2_3 216.91 137.42 919440000 250710000 235700000 176690000 12204000 125170000 87475000 31489000 0 6807 1219 5830 41211;41212;41213;41214;41215;41216;41217 26305;26306;26307;26308;26309;26310;26311 26310 7 NENIVYVGDLVAR Deamidation (NQ) 1461.7464 0.74635808 1219 Karp_00886 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.794 70.926 2 0.0001482 32276 20181213_JW_Orientia_Karp_1_2 165.35 104.66 40716000 8637700 11510000 0 0 4972700 0 12650000 2945100 6808 1219 5830 41218;41219;41220;41221;41222;41223;41224 26312;26313;26314;26315;26316;26317;26318 26312 622 7 NENTFLDLTVQQIEHLNK Unmodified 2155.0909 0.090946857 775 C9JWG0;C9JVG3;C9JNZ1;Q16851-2;C9JQU9;Q53QE9;B2RAN1;E7EUC7;B4DUP2;Q16851 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 68.523 68.827 3 0.031778 30973 20181213_JW_Orientia_Karp_1_2 72.315 27.39 8782100 0 2922100 0 0 0 0 4009500 1850500 6809 775 5831 41225;41226;41227 26319 26319 1 NEQVVQNLNK Deamidation (NQ) 1185.599 0.59896556 2030 yes no 0 1 0 0 By MS/MS By matching By matching By matching By matching 2 1 1 1 1 38.271 38.539 2 0.024193 12561 20181213_JW_Orientia_Karp_1_1 88.177 35.598 60919000 31051000 17132000 11309000 763970 0 0 0 663840 + 6810 2030 5832 41228;41229;41230;41231;41232;41233 26320 26320 1242 1 NEQYNDITTTTGSVK Unmodified 1669.7795 0.7795087 1127 Karp_00330 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 38.771 39.105 2 5.4777E-13 12833 20181213_JW_Orientia_Karp_1_1 230.69 158.6 49957000 12357000 19202000 9011300 3656800 0 2485900 3244200 0 6811 1127 5833 41234;41235;41236;41237;41238;41239 26321;26322 26321 2 NESNIKPVQTVNITAGFPVVGQK 2 Deamidation (NQ) 2441.2802 0.28020419 58 Q7Z606;Q5YLB2;F8W8H7;A0A024R1V8;A0A024R1Y1;Q3LRH8;A0A024R1W0;Q5XLT4;G8I0D8;A0A024R1Y0;E9PFZ0;P38398-4;P38398;P38398-7 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 2 0 1 By MS/MS 1 70.63 70.778 3 0.021685 28767 20181213_JW_Orientia_Karp_2_1 65.16 13.812 0 0 0 0 0 0 0 0 0 6812 58 5834 41240 26323 26323 23;1270 1 NEVLGNFNSEEYQVER Unmodified 1925.8755 0.87553435 1216 Karp_00883 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 52.584 52.892 2 0.0029837 21049 20181213_JW_Orientia_Karp_1_1 111.81 72.848 54295000 12596000 12596000 13192000 2643900 3715500 3334100 6217400 0 6813 1216 5835 41241;41242;41243;41244;41245;41246;41247 26324;26325;26326;26327;26328;26329 26324 5 NFASVQGVSLESGSFPSYSAYR Unmodified 2352.1022 0.10223983 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y5N9;H0Y991 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS 1 64.256 64.354 2 0.011006 27758 20181213_JW_Orientia_Karp_1_3 80.488 50.997 4410600 0 0 4410600 0 0 0 0 0 6814 852 5836 41248 26330 26330 1 NFATSLYSMIK Unmodified 1273.6377 0.63765925 1573 V9HWE0;P08758;D6RBL5;D6RBE9 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 64.882 65.064 2 0.00081822 28513 20181213_JW_Orientia_Karp_1_2 159.34 86.457 23978000 11649000 4233500 4388700 0 0 2856100 0 851450 6815 1573 5837 41249;41250;41251;41252;41253 26331;26332 26332 2 NFATSLYSMIK Oxidation (M) 1289.6326 0.63257388 1573 V9HWE0;P08758;D6RBL5;D6RBE9 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 1 2 55.271 55.618 2 0.00071559 22763 20181213_JW_Orientia_Karp_1_2 131.42 73.868 91537000 11855000 23061000 29631000 5193200 14876000 5550200 0 1370600 6816 1573 5837 41254;41255;41256;41257;41258;41259;41260;41261;41262;41263;41264 26333;26334;26335;26336 26333 1198 3 NFDIAIR Unmodified 847.4552 0.45520186 1152 Karp_01552;Karp_00538 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.133 50.434 2 0.020652 17725 20181213_JW_Orientia_Karp_2_2 101.6 33.62 43425000 4434300 4841800 5364400 17942000 4387200 6116700 0 338080 6817 1152 5838 41265;41266;41267;41268;41269;41270;41271 26337;26338;26339;26340 26339 4 NFDLAIK Unmodified 819.44905 0.44905385 1340;1084 Karp_01512;Karp_01130;Karp_01129;Karp_00716;Karp_01558;Karp_00147 no no 0 0 0 0 By MS/MS 1 49.165 49.316 2 0.016863 17028 20181213_JW_Orientia_Karp_2_2 108.09 0 1864100 0 0 0 0 1864100 0 0 0 6818 1340;1084 5839 41272 26341 26341 1 NFEDVAFDEK Unmodified 1212.5299 0.52988294 171 B4DNL5;A0A024R8S5;P07237;F5H8J2;B4DLN6;H7BZ94;B4DUA5;Q96C96;H0Y3Z3;B3KTQ9 P4HB Protein disulfide-isomerase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.136 50.386 2 0.00021146 17905 20181213_JW_Orientia_Karp_2_3 144.77 62.018 97954000 27008000 20943000 17520000 16455000 5316900 10711000 0 0 6819 171 5840 41273;41274;41275;41276;41277;41278;41279 26342;26343;26344;26345;26346;26347;26348 26347 7 NFEPFVIQIEEK Unmodified 1491.7609 0.76094551 1059 Karp_00003 yes yes 0 0 0 0 By MS/MS By matching 1 1 67.148 67.353 2 0.004192 30138 20181213_JW_Orientia_Karp_1_1 115.92 51.08 20655000 17642000 0 0 0 0 0 0 3012900 6820 1059 5841 41280;41281 26349 26349 1 NFGIGQDIQPK Unmodified 1215.6248 0.62478638 1736 P62424;Q5T8U3 RPL7A 60S ribosomal protein L7a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.369 47.714 2 5.9976E-07 15298 20181213_JW_Orientia_Karp_3_2 180.09 86.493 241250000 45702000 85591000 52753000 12527000 9371200 11716000 1698600 21887000 6821 1736 5842 41282;41283;41284;41285;41286;41287;41288;41289 26350;26351;26352;26353;26354;26355;26356;26357;26358 26358 9 NFGIGQDIQPK Deamidation (NQ) 1216.6088 0.60880197 1736 P62424;Q5T8U3 RPL7A 60S ribosomal protein L7a yes no 0 1 0 0 By MS/MS 1 58.308 58.506 2 0.014149 24071 20181213_JW_Orientia_Karp_1_3 99.788 55.479 7972200 0 0 7972200 0 0 0 0 0 6822 1736 5842 41290 26359 26359 1141 1 NFGSYVTHETK Unmodified 1281.599 0.59896556 1741 Q6FGH9;Q96FJ2;P63167 DNCL1;DYNLL2;DYNLL1 Dynein light chain 2, cytoplasmic;Dynein light chain 1, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 30.38 30.71 2 1.2235E-09 8753 20181213_JW_Orientia_Karp_1_1 206.73 110.91 25951000 8444500 8409900 5159600 0 1225200 0 2711500 0 6823 1741 5843 41291;41292;41293;41294;41295 26360;26361;26362;26363;26364 26360 5 NFIETATIEFK Unmodified 1311.6711 0.67106787 1434 Karp_02392 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 60.906 61.166 2 0.0042565 22453 20181213_JW_Orientia_Karp_3_2 108.43 36.739 45651000 13655000 8175300 10817000 0 3928800 5206800 0 3867200 6824 1434 5844 41296;41297;41298;41299;41300;41301 26365;26366 26366 2 NFILDQTNVSAAAQR Unmodified 1646.8376 0.8376327 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS 1 53.649 53.999 2 1.1767E-25 21475 20181213_JW_Orientia_Karp_1_2 231.74 132.4 0 0 0 0 0 0 0 0 0 6825 595 5845 41302 26367 26367 1 NFILDQTNVSAAAQR Deamidation (NQ) 1647.8216 0.82164829 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 1 0 0 By MS/MS By MS/MS By matching 1 1 1 53.642 53.995 2 0.00108 21254 20181213_JW_Orientia_Karp_1_3 139.48 72.091 67897000 0 0 62768000 0 4177300 0 0 951920 6826 595 5845 41303;41304;41305 26368;26369 26368 211 2 NFINNPLAQADWAAK Unmodified 1671.8369 0.83690442 47 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.983 64.227 2 2.0675E-27 28269 20181213_JW_Orientia_Karp_1_1 269.44 180.39 501860000 174160000 165200000 107220000 7428700 25604000 0 5195300 17054000 6827 47 5846 41306;41307;41308;41309;41310;41311;41312 26370;26371;26372;26373;26374;26375;26376;26377 26371 8 NFINNPLAQADWAAK Deamidation (NQ) 1672.8209 0.82092001 47 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99 MYH9 Myosin-9 yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 73.856 73.886 2 0.0016314 33914 20181213_JW_Orientia_Karp_1_3 133.88 93.723 98840000 50205000 0 36161000 772650 3450100 0 8251400 0 6828 47 5846 41313;41314;41315;41316;41317 26378;26379 26379 20 2 NFITAEELR Unmodified 1091.5611 0.56112349 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 48.809 49.11 2 0.00056413 18562 20181213_JW_Orientia_Karp_1_1 155.58 67.888 242680000 63854000 78764000 48468000 20007000 7831200 11880000 0 11877000 6829 1509 5847 41318;41319;41320;41321;41322;41323;41324 26380;26381;26382;26383;26384 26380 5 NFITAEELR Deamidation (NQ) 1092.5451 0.54513908 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 1 0 0 By matching By MS/MS 1 1 61.669 61.768 2 0.01773 26149 20181213_JW_Orientia_Karp_1_3 94.692 44.651 4593600 2358900 0 2234700 0 0 0 0 0 6830 1509 5847 41325;41326 26385 26385 1016 1 NFLNEQFELAK Unmodified 1351.6772 0.67721588 1416 Karp_02253 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.829 59.167 2 6.2738E-08 22440 20181213_JW_Orientia_Karp_2_2 193.83 91.211 157330000 44815000 56361000 0 14548000 18142000 16881000 1574500 5006800 6831 1416 5848 41327;41328;41329;41330;41331;41332;41333 26386;26387;26388;26389;26390;26391;26392;26393;26394 26391 9 NFLVEWIK Unmodified 1047.5753 0.57531699 1290 Karp_01163 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 66.687 66.829 2 0.0049619 26209 20181213_JW_Orientia_Karp_2_2 136.27 36.893 22502000 8831600 0 7404500 0 3201300 1888800 0 1175700 6832 1290 5849 41334;41335;41336;41337;41338 26395;26396;26397;26398 26397 4 NFLYKPEDGVALLLEYQEK Unmodified 2268.1678 0.16780019 1162 Karp_00605 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 69.789 69.906 3 0.0037955 28267 20181213_JW_Orientia_Karp_2_3 100.58 48.532 38598000 9239300 0 7844100 4454700 4699900 3854900 8505500 0 6833 1162 5850 41339;41340;41341;41342;41343;41344 26399;26400 26400 2 NFMLTQPHSVSGSPGK Acetyl (Protein N-term);Oxidation (M);Deamidation (NQ) 1744.809 0.80903469 1943 Q96JD2 yes yes 1 1 1 0 By MS/MS 1 73.668 73.668 2 0.029374 34084 20181213_JW_Orientia_Karp_1_1 50.207 13.536 669940000 669940000 0 0 0 0 0 0 0 6834 1943 5851 41345 26401 26401 1207 0 NFNFEVEVVK Unmodified 1223.6186 0.61863837 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 57.985 58.33 2 1.2166E-24 23952 20181213_JW_Orientia_Karp_1_3 242.39 169.51 3291000000 1243600000 624360000 354020000 287350000 252590000 343030000 164660 185860000 6835 1296 5852 41346;41347;41348;41349;41350;41351;41352;41353;41354 26402;26403;26404;26405;26406;26407;26408;26409;26410;26411;26412 26405 11 NFNFEVEVVK Deamidation (NQ) 1224.6027 0.60265396 1296 Karp_01187 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 3 4 2 3 64.626 64.856 2 2.2834E-17 31372 20181213_JW_Orientia_Karp_1_1 232.72 151.2 306600000 94756000 26435000 71579000 2351000 39464000 29243000 24189000 18579000 6836 1296 5852 41355;41356;41357;41358;41359;41360;41361;41362;41363;41364;41365;41366;41367;41368;41369;41370;41371;41372;41373;41374;41375;41376;41377;41378 26413;26414;26415;26416;26417;26418;26419;26420;26421;26422;26423;26424;26425;26426;26427;26428;26429 26414 718;719 16 NFNLAIK Deamidation (NQ) 819.44905 0.44905385 1355 Karp_01675 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 49.781 50.118 2 0.022607 18662 20181213_JW_Orientia_Karp_1_3 128.82 8.1947 74046000 0 31897000 11128000 25215000 0 5805200 0 0 6837 1355 5853 41379;41380;41381;41382;41383 26430;26431 26431 813 2 NFQNIFPPSATLHLSNIPPSVSEEDLK Unmodified 2993.5135 0.5134516 1633 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 69.29 69.373 3 0.0022413 30628 20181213_JW_Orientia_Karp_1_3 65.207 33.182 35962000 9954400 17201000 8806600 0 0 0 0 0 6838 1633 5854 41384;41385;41386 26432;26433;26434;26435 26435 4 NFQNIFPPSATLHLSNIPPSVSEEDLK Deamidation (NQ) 2994.4975 0.49746719 1633 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 1 0 0 By MS/MS By MS/MS 1 1 68.957 69.161 3 0.015467 27323 20181213_JW_Orientia_Karp_3_2 57.147 27.402 10781000 0 0 7672000 0 0 0 0 3109400 6839 1633 5854 41387;41388 26436;26437 26437 1089 2 NFQQFLELLQTK Unmodified 1507.8035 0.80347903 1459 Karp_02609 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 73.62 73.644 2 3.662E-06 34078 20181213_JW_Orientia_Karp_1_2 179.19 104.35 28563000 14674000 6059700 6775800 1053300 0 0 0 0 6840 1459 5855 41389;41390;41391;41392;41393 26438;26439;26440 26439 3 NFQTAHR Unmodified 872.4253 0.42529871 1523 O75475-3;O75475-2;O75475;V9GYT7 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 14.753 14.977 2 0.014035 2462 20181213_JW_Orientia_Karp_1_2 113.89 71.414 4343000 1925900 1397100 804530 215510 0 0 0 0 6841 1523 5856 41394;41395;41396;41397 26441;26442 26441 2 NFSDNQLQEGK Unmodified 1278.584 0.58404378 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 33.38 33.738 2 1.5479E-45 9670 20181213_JW_Orientia_Karp_1_2 280.09 150.67 643180000 127390000 130450000 141640000 82801000 32376000 31524000 53506000 43492000 6842 1662 5857 41398;41399;41400;41401;41402;41403;41404;41405 26443;26444;26445;26446;26447;26448;26449;26450 26444 8 NFSDNQLQEGK Deamidation (NQ) 1279.5681 0.56805936 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 1 0 0 By MS/MS By MS/MS 1 1 39.588 39.663 2 0.013217 13594 20181213_JW_Orientia_Karp_2_2 108.37 51.457 0 0 0 0 0 0 0 0 0 6843 1662 5857 41406;41407 26451;26452 26452 1111;1952 2 NFSYIPQETYIFSDTIK Unmodified 2065.0044 0.004423261 1429 Karp_02383 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 71.471 71.553 2 0.015325 32301 20181213_JW_Orientia_Karp_1_3 109.99 51.504 40451000 19929000 0 17045000 3476600 0 0 0 0 6844 1429 5858 41408;41409;41410;41411 26453;26454 26453 2 NFWTSGSE Unmodified 926.37701 0.37701112 1073 Karp_00049 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.778 55.136 1 9.1128E-07 22409 20181213_JW_Orientia_Karp_1_1 172.03 135.85 125050000 40782000 25246000 33928000 7637600 6156000 8251300 2337700 709330 6845 1073 5859 41412;41413;41414;41415;41416;41417;41418;41419 26455;26456 26455 1 NFWVSGLSSTTR Unmodified 1353.6677 0.66771383 346 B7Z5X3;B7ZLP5;A8K329;Q15424;Q15424-4;Q15424-3;B7Z1C7;B7Z2F6;B7Z2Z1;Q15424-2;B7Z959 SAFB Scaffold attachment factor B1 yes no 0 0 0 0 By MS/MS 1 56.025 56.276 2 0.020389 20850 20181213_JW_Orientia_Karp_2_2 98.754 61.154 0 0 0 0 0 0 0 0 0 6846 346 5860 41420 26457 26457 1 NGAQYIIEMQVDPTQGFEK Oxidation (M);Deamidation (NQ) 2184.0045 0.0044996155 1151;1356;1083 Karp_00131;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 68.362 68.531 2;3 2.6427E-24 30886 20181213_JW_Orientia_Karp_1_2 222.75 152.21 204920000 33965000 20272000 38712000 11359000 37319000 13467000 34901000 14926000 6847 1083;1151;1356 5861 41421;41422;41423;41424;41425;41426;41427;41428;41429;41430;41431;41432;41433;41434;41435;41436;41437 26458;26459;26460;26461;26462;26463;26464;26465;26466;26467 26461 433;1795 600 10 NGAQYIIEMQVDPTQGFEK Deamidation (NQ) 2168.0096 0.0095849934 1151;1356;1083 Karp_00131;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 1 0 0 By matching By MS/MS By MS/MS By matching 2 1 2 1 73.414 73.446 2;3 0.00013945 34251 20181213_JW_Orientia_Karp_1_2 132.87 87.255 177710000 90398000 23349000 63858000 100530 0 0 0 0 6848 1083;1151;1356 5861 41438;41439;41440;41441;41442;41443 26468;26469;26470 26468 433;1795 3 NGDFLPTR Deamidation (NQ) 919.43995 0.43994572 1707 P55036;Q5VWC4;A6PVX3;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 1 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.575 52.874 2 0.036789 19299 20181213_JW_Orientia_Karp_2_3 88.177 32.501 17742000 0 5917900 3826800 3291500 1149500 3556600 0 0 6849 1707 5862 41444;41445;41446;41447;41448 26471 26471 1 NGELIQILQIK Deamidation (NQ) 1268.734 0.73400248 1431 Karp_02388 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 74.658 74.687 2 4.7345E-09 34749 20181213_JW_Orientia_Karp_1_2 202.44 107.08 63244000 25146000 17880000 9240600 0 1795300 3278400 2938900 2964700 6850 1431 5863 41449;41450;41451;41452;41453;41454;41455 26472;26473;26474;26475;26476;26477 26473 951 6 NGFIDKEDLHDMLASLGK Deamidation (NQ) 2002.967 0.9669919 1831 Q53HL1 yes yes 0 1 0 1 By MS/MS 1 66.831 66.831 3 0.040106 29811 20181213_JW_Orientia_Karp_1_1 78.166 6.764 21509000 21509000 0 0 0 0 0 0 0 6851 1831 5864 41456 26478 26478 1 NGFVVLK Deamidation (NQ) 776.44324 0.44324019 1018 I3L397;I3L504;P63241;P63241-2;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 1 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 3 2 1 55.836 56.132 2 0.010245 19322 20181213_JW_Orientia_Karp_2_2 132.96 33.041 154110000 32088000 25649000 18500000 2243500 17814000 49390000 0 8424400 6852 1018 5865 41457;41458;41459;41460;41461;41462;41463;41464;41465;41466;41467 26479;26480;26481;26482;26483 26480 372 5 NGHVGISFVPK Deamidation (NQ) 1154.6084 0.60840804 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9 FLNA;FLJ00119 Filamin-A yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 48.165 48.491 3 0.0019055 17818 20181213_JW_Orientia_Karp_1_2 119.34 79.462 34368000 0 27198000 0 3665300 305530 3199400 0 0 6853 1615 5866 41468;41469;41470;41471;41472;41473 26484;26485;26486;26487;26488 26485 1078 5 NGLSLAALK Deamidation (NQ) 886.51238 0.51238239 1604 P16401 HIST1H1B Histone H1.5 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 1 58.856 59.093 2 0.00046242 25613 20181213_JW_Orientia_Karp_1_3 164.68 66.265 344650000 180950000 31403000 69969000 0 9595500 22928000 0 29813000 6854 1604 5867 41474;41475;41476;41477;41478;41479;41480;41481;41482;41483;41484 26489;26490;26491;26492;26493;26494;26495;26496 26494 1067 8 NGNGGPGPYVGQAGTATLPR 2 Deamidation (NQ) 1884.8966 0.89660415 781 Q96FS1;Q68DU0;C9JZR2;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;O60716-7;O60716-5;O60716-3;O60716-6;O60716-4;O60716-2;O60716;E9PRE2 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 0 2 0 0 By MS/MS 1 58.552 58.902 2 0.013792 24601 20181213_JW_Orientia_Karp_1_2 85.006 31.769 0 0 0 0 0 0 0 0 0 6855 781 5868 41485 26497 26497 258;259 1 NGNLPEFGDAISTASK Deamidation (NQ) 1620.7631 0.76313036 2016 Q9Y490 TLN1 Talin-1 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 64.168 64.37 2 7.8535E-05 27703 20181213_JW_Orientia_Karp_1_3 150.9 105.03 67050000 18139000 28143000 12488000 832190 3402800 2198000 0 1846400 6856 2016 5869 41486;41487;41488;41489;41490;41491;41492 26498;26499;26500 26500 1239 3 NGPLEVAGAAVSAGHGLPAK Deamidation (NQ) 1815.9479 0.94791144 1518 O75367-2;O75367-3;O75367;Q59FH0;B4DJC3 H2AFY Core histone macro-H2A.1;Histone H2A yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 57.08 57.442 3 0.0016365 23440 20181213_JW_Orientia_Karp_1_3 103.99 78.934 92460000 26014000 39646000 23844000 0 0 0 197320 2758000 6857 1518 5870 41493;41494;41495;41496;41497 26501;26502 26502 1019 2 NGPVEGAFSVYSDFLLYK Deamidation (NQ) 2005.9673 0.96730947 77;1867 B4DL49;A0A024R374;P07858;B4DMY4;B3KUJ8;Q6LAF9 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain no no 0 1 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 77.716 77.686 2 0.00029114 32050 20181213_JW_Orientia_Karp_2_1 135.02 98.178 29572000 12276000 0 6699000 3429900 0 2455500 4711300 0 6858 77;1867 5871 41498;41499;41500;41501;41502 26503 26503 32 1 NGSLVDGVIFGK Deamidation (NQ) 1205.6292 0.62920306 1095 Karp_00244 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 71.215 71.323 2 9.0324E-05 33099 20181213_JW_Orientia_Karp_1_3 167.2 109.65 74199000 14235000 1543100 31237000 0 5635100 0 21550000 0 6859 1095 5872 41503;41504;41505;41506;41507;41508;41509 26504;26505;26506;26507;26508;26509;26510 26508 451 7 NGTLISISQQKR 2 Deamidation (NQ) 1345.7201 0.72014333 1002 H7C1B0;Q5THK1 PRR14L Protein PRR14L yes no 0 2 0 1 By matching By MS/MS By matching 1 1 1 45.867 46.218 2 0.032483 15640 20181213_JW_Orientia_Karp_2_3 70.056 9.1462 10016000 0 0 0 0 3057800 4739600 2218600 0 6860 1002 5873 41510;41511;41512 26511 26511 1757 0 NGTQYIIEMQVDPTQGFEK Oxidation (M);Deamidation (NQ) 2214.0151 0.015064302 1081;1086 Karp_00113;Karp_01301;Karp_00209 no no 0 1 1 0 By MS/MS By matching By matching By matching 1 1 1 1 67.934 68.034 3 0.038972 30463 20181213_JW_Orientia_Karp_1_1 53.327 31.131 19343000 6190600 0 7084600 0 3536300 2532000 0 0 6861 1081;1086 5874 41513;41514;41515;41516 26512 26512 430;1793;1794 598 0 NGTQYIIEMQVDPTQGFEK Deamidation (NQ) 2198.0201 0.02014968 1081;1086 Karp_00113;Karp_01301;Karp_00209 no no 0 1 0 0 By matching By MS/MS By matching 1 1 1 73.683 73.699 2 0.015303 34108 20181213_JW_Orientia_Karp_1_2 91.932 53.259 49212000 17290000 13912000 18009000 0 0 0 0 0 6862 1081;1086 5874 41517;41518;41519 26513 26513 430;1793;1794 1 NGTQYIIEMQVDPTQGFEK Oxidation (M) 2213.031 0.031048717 1081;1086 Karp_00113;Karp_01301;Karp_00209 no no 0 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 67.835 67.965 2 0.025432 30044 20181213_JW_Orientia_Karp_1_3 70.373 37.056 37751000 10512000 7213300 13582000 0 3628200 2815800 0 0 6863 1081;1086 5874 41520;41521;41522;41523;41524 26514 26514 598 1 NGVDLLMK Oxidation (M);Deamidation (NQ) 905.45282 0.4528186 163;1504 O15511;O15511-2;B3KTE1;B1ALC0;B3KPC7;A0A024R897;Q9BPX5 ARPC5;ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein no no 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 52.642 52.902 2 0.0058862 19300 20181213_JW_Orientia_Karp_2_3 145.16 56.513 55884000 17953000 10547000 0 10400000 5183900 11801000 0 0 6864 1504;163 5875 41525;41526;41527;41528;41529;41530 26515;26516;26517;26518;26519;26520 26520 66;1011 134 6 NGVMPSHFSR Oxidation (M);Deamidation (NQ) 1147.508 0.50804206 433 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 RPS19 40S ribosomal protein S19 yes no 0 1 1 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 2 1 1 1 1 1 28.553 28.869 3 0.018496 6927 20181213_JW_Orientia_Karp_1_3 74.841 23.396 21792000 6038900 2015500 5325300 1064800 1395100 766750 1846400 3339500 6865 433 5876 41531;41532;41533;41534;41535;41536;41537;41538;41539;41540 26521;26522;26523 26521 168 289 3 NGVSGGIISK Deamidation (NQ) 931.49746 0.4974606 1231 Karp_00898 yes yes 0 1 0 0 By MS/MS 1 42.9 42.9 2 0.0076493 14932 20181213_JW_Orientia_Karp_1_1 104.43 28.696 19195000 19195000 0 0 0 0 0 0 0 6866 1231 5877 41541 26524 26524 634 1 NGYGFINR Deamidation (NQ) 940.44028 0.44028008 1745;204;1939 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;B2RCC2;Q9Y2T7;A0A024RAV4;A0A024RAQ1;P16989-2;P16989-3;P16989;Q59EB5;Q96GD7 YBX1;YBX2;CSDA;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 no no 0 1 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 51.417 51.718 2 0.0076626 18490 20181213_JW_Orientia_Karp_2_2 140.98 88.581 239950000 17336000 21190000 5652800 97925000 19241000 78390000 0 214490 6867 1745;204;1939 5878 41542;41543;41544;41545;41546;41547;41548;41549 26525;26526;26527;26528 26526 82 4 NHAVIAEIDGCVK Unmodified 1424.7082 0.70819844 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 39.02 39.22 2 0.022079 12565 20181213_JW_Orientia_Karp_1_2 97.163 54.972 7941400 0 0 6709100 0 585120 647190 0 0 6868 1169 5879 41550;41551;41552;41553 26529;26530 26529 2 NHEEEISTLR Unmodified 1226.5891 0.58912916 555 B4DE59;K7EMS3 KRT19 no no 0 0 0 0 By MS/MS 1 28.27 28.27 2 0.0038748 7590 20181213_JW_Orientia_Karp_1_1 105.98 63.688 2679800 2679800 0 0 0 0 0 0 0 6869 555 5880 41554 26531 26531 1 NHEEEMNALR Unmodified 1241.5459 0.54588413 790;924;807 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;CON__Q04695;CON__Q9QWL7;Q04695;Q14666;K7EPJ9;K7ESE1;F5GWP8 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 0 0 0 0 By MS/MS 1 26.348 26.7 2 0.019408 5370 20181213_JW_Orientia_Karp_2_2 96.665 34.119 0 0 0 0 0 0 0 0 0 + 6870 790;807;924 5881 41555 26532 26532 1 NHETILSLPIVSNEDVFQIIAR Unmodified 2507.3384 0.33838777 1270 Karp_01078 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 73.98 74.013 3 3.4494E-09 34012 20181213_JW_Orientia_Karp_1_3 159.5 125.79 122260000 52535000 41166000 22136000 380800 2147800 0 3897900 0 6871 1270 5882 41556;41557;41558;41559;41560;41561 26533;26534;26535;26536;26537;26538 26537 6 NHFTVALNEK Unmodified 1171.5986 0.59857163 1690 Q53X91;P49888;H0Y8G0 SULT1E1 Sulfotransferase;Estrogen sulfotransferase yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 33.49 33.853 2 0.0077056 9472 20181213_JW_Orientia_Karp_3_1 97.565 59.479 36317000 0 9989500 20816000 0 0 1026100 4485800 0 6872 1690 5883 41562;41563;41564;41565 26539;26540 26540 2 NHIITVMTEHK Oxidation (M) 1337.6762 0.67617003 1276 Karp_01108 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 22.395 22.662 3 0.0032248 4686 20181213_JW_Orientia_Karp_1_3 108.98 73.332 19831000 0 9528600 6649200 0 3653100 0 0 0 6873 1276 5884 41566;41567;41568;41569 26541;26542 26542 842 2 NHKEEMSQLTGQNSGDVNVEINVAPGK Oxidation (M) 2910.3778 0.37776276 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 1 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 41.4 41.72 4 0.0064515 13088 20181213_JW_Orientia_Karp_2_1 57.152 34.743 203400000 13751000 36453000 0 58620000 46655000 0 47922000 0 + 6874 1653 5885 41570;41571;41572;41573;41574 26543;26544 26543 1270 2 NHKEEMSQLTGQNSGDVNVEINVAPGK Oxidation (M);Deamidation (NQ) 2911.3618 0.36177834 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 43.594 44.01 3;4 0.00039969 14636 20181213_JW_Orientia_Karp_2_3 81.477 61.051 64316000 0 0 0 12320000 9228200 9752300 31938000 1077100 + 6875 1653 5885 41575;41576;41577;41578;41579;41580;41581 26545;26546;26547;26548;26549 26547 1097;1100;1941;1942 1270 5 NHKEEMSQLTGQNSGDVNVEINVAPGK Unmodified 2894.3828 0.38284814 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 45.293 45.735 4 0.0027399 15122 20181213_JW_Orientia_Karp_2_1 63.158 44.089 78775000 0 13123000 0 35260000 0 14929000 9630500 5832000 + 6876 1653 5885 41582;41583;41584;41585;41586 26550;26551;26552 26550 3 NHKEEMSQLTGQNSGDVNVEINVAPGK Deamidation (NQ) 2895.3669 0.36686372 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 0 1 By matching By MS/MS 1 1 47.713 47.914 3 0.00085172 16571 20181213_JW_Orientia_Karp_2_3 94.449 63.864 6895400 0 0 0 0 2857900 4037500 0 0 + 6877 1653 5885 41587;41588 26553 26553 1097;1100;1941;1942 1 NHKEEMSQLTGQNSGDVNVEINVAPGK 2 Deamidation (NQ) 2896.3509 0.35087931 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 2 0 1 By MS/MS 1 47.374 47.984 3 0.013421 15414 20181213_JW_Orientia_Karp_3_2 64.545 40.031 0 0 0 0 0 0 0 0 0 + 6878 1653 5885 41589 26554 26554 1097;1100;1941;1942 1 NHLPNITADVVNLIPESTSTK Unmodified 2262.1856 0.18557552 1391 Karp_02140 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 63.919 64.086 3 5.1278E-06 27930 20181213_JW_Orientia_Karp_1_2 142.23 69.169 142270000 41293000 19243000 22028000 2033200 27886000 29789000 0 0 6879 1391 5886 41590;41591;41592;41593;41594;41595 26555;26556;26557;26558;26559;26560 26556 6 NHLPNITADVVNLIPESTSTK Deamidation (NQ) 2263.1696 0.16959111 1391 Karp_02140 yes yes 0 1 0 0 By matching By MS/MS By matching By matching 1 1 1 1 72.084 72.198 3 0.0021988 32738 20181213_JW_Orientia_Karp_1_3 102.07 20.057 32441000 11970000 0 5211500 0 0 0 13489000 1770300 6880 1391 5886 41596;41597;41598;41599 26561 26561 887;888 1 NHLPNITADVVNLIPESTSTK 2 Deamidation (NQ) 2264.1536 0.15360669 1391 Karp_02140 yes yes 0 2 0 0 By matching By matching By MS/MS 1 1 1 63.478 63.816 3 0.021472 24196 20181213_JW_Orientia_Karp_3_2 84.113 30.01 107590000 0 0 0 0 0 100030000 149160 7408300 6881 1391 5886 41600;41601;41602 26562 26562 887;888 0 NHRPELPSELK Unmodified 1318.6993 0.69934831 1329 Karp_01364 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 28.721 29.101 3 0.029285 7405 20181213_JW_Orientia_Karp_1_3 112.83 36.552 10752000 0 0 4780600 1506700 1833200 1362500 1269200 0 6882 1329 5887 41603;41604;41605;41606;41607 26563 26563 1 NHTNSLDK Unmodified 927.44101 0.44100836 1160 Karp_00595 yes yes 0 0 0 0 By MS/MS 1 2.0718 2.5815 2 0.013215 303 20181213_JW_Orientia_Karp_3_2 98.629 41.177 107710 0 0 0 0 0 0 0 107710 6883 1160 5888 41608 26564 26564 1 NIAAAFENNDNLPK Unmodified 1529.7474 0.74742071 1109 Karp_00291 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.779 51.181 2 0.00016544 18104 20181213_JW_Orientia_Karp_2_1 158.34 116.91 89647000 0 0 30020000 17448000 13573000 9816800 13811000 4977400 6884 1109 5889 41609;41610;41611;41612;41613;41614;41615 26565;26566;26567;26568;26569;26570;26571;26572;26573;26574 26568 10 NIAAAFENNDNLPK Deamidation (NQ) 1530.7314 0.7314363 1109 Karp_00291 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 52.746 53.183 2 0.0009936 20614 20181213_JW_Orientia_Karp_1_3 145.23 83.461 29827000 0 11642000 12636000 3028000 0 0 2520800 0 6885 1109 5889 41616;41617;41618;41619 26575;26576 26575 486 2 NIADLMTQAGVEELESENK Unmodified 2089.9838 0.98376417 1525 O75506 HSBP1 Heat shock factor-binding protein 1 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 70.059 70.158 2 0.0033796 28423 20181213_JW_Orientia_Karp_2_1 128.82 87.729 12983000 6648300 5162900 0 1171500 0 0 0 0 6886 1525 5890 41620;41621;41622 26577 26577 1 NIAITAQSAKPNQIFFALPGISR Unmodified 2456.354 0.35397826 1072 Karp_00045 yes yes 0 0 0 1 By matching By MS/MS By matching 1 1 1 67.725 67.995 3 0.0046295 24028 20181213_JW_Orientia_Karp_3_1 89.47 63.851 9938500 0 0 0 0 0 1016400 5803200 3119000 6887 1072 5891 41623;41624;41625 26578 26578 1 NIAMHIAATNPR Oxidation (M) 1323.6718 0.67175335 1346 Karp_01522 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 3 2 1 28.685 29.014 2;3 0.0001442 7488 20181213_JW_Orientia_Karp_1_2 160.91 104.9 373700000 65443000 127150000 73123000 38190000 37974000 18090000 0 13737000 6888 1346 5892 41626;41627;41628;41629;41630;41631;41632;41633;41634;41635;41636;41637;41638;41639 26579;26580;26581;26582;26583;26584;26585 26579 915 6 NIAMHIAATNPR Unmodified 1307.6768 0.67683873 1346 Karp_01522 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 35.163 35.572 3 0.005599 9925 20181213_JW_Orientia_Karp_2_1 89.356 57.348 232730000 0 6545100 135850000 12598000 16352000 4224800 39744000 17418000 6889 1346 5892 41640;41641;41642;41643;41644;41645;41646 26586;26587 26586 2 NIANGEVAQGIKPINPILTNQLTQK Deamidation (NQ) 2674.4654 0.4653792 1122 Karp_00322 yes yes 0 1 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 61.079 61.399 3 0.00056982 26232 20181213_JW_Orientia_Karp_1_2 102.92 81.058 473230000 91823000 81396000 133720000 42853000 56958000 32636000 169780 33672000 6890 1122 5893 41647;41648;41649;41650;41651;41652;41653;41654 26588;26589 26588 499;500 2 NIAVNEVQPMLFESNVR Oxidation (M) 1974.9833 0.98331066 1112 Karp_00294 yes yes 0 0 1 0 By MS/MS By matching By matching 1 1 1 59.854 60.12 2 0.00061788 25642 20181213_JW_Orientia_Karp_1_1 122.66 12.446 38825000 22786000 10263000 0 5776600 0 0 0 0 6891 1112 5894 41655;41656;41657 26590 26590 632 1 NIAYAIDKPWITIHNK Unmodified 1896.0258 0.025767826 1251 Karp_00928 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.164 50.414 3 0.009283 19509 20181213_JW_Orientia_Karp_1_1 97.223 74.577 239810000 68829000 38948000 46033000 31127000 27289000 27581000 0 0 6892 1251 5895 41658;41659;41660;41661;41662;41663 26591;26592;26593 26591 3 NICDTVEMDFDSLK Unmodified 1685.7277 0.72767283 1409 Karp_02226 yes yes 0 0 0 0 By MS/MS 1 66.695 66.695 2 0.028722 29733 20181213_JW_Orientia_Karp_1_1 94.402 56.846 0 0 0 0 0 0 0 0 0 6893 1409 5896 41664 26594 26594 1 NIDHLNYTIDTPWIYVER Unmodified 2261.1117 0.1116823 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.422 67.599 3 0.00015697 29760 20181213_JW_Orientia_Karp_1_3 125.96 84.476 143440000 58181000 10752000 21445000 0 20555000 11332000 0 21170000 6894 1396 5897 41665;41666;41667;41668;41669;41670;41671 26595;26596;26597;26598;26599;26600 26596 6 NIDLYLDNEEFK Unmodified 1511.7144 0.71438925 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 61.795 62.038 2 5.4982E-06 26930 20181213_JW_Orientia_Karp_1_1 178.71 133.12 78404000 18550000 19418000 18176000 0 12406000 6690000 0 3164900 6895 1162 5898 41672;41673;41674;41675;41676;41677 26601;26602;26603;26604;26605 26601 5 NIDTSNSLSLISNQQETINSETTLK Unmodified 2749.3618 0.36176157 1390 Karp_02139 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 62.288 62.438 3 0.0013218 26949 20181213_JW_Orientia_Karp_1_2 117.51 81.056 45170000 21259000 0 10800000 0 5563300 7547400 0 0 6896 1390 5899 41678;41679;41680;41681;41682 26606;26607;26608 26607 3 NIDVLLLTDDVDK Unmodified 1471.777 0.77698951 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.927 70.049 2 1.6338E-191 31352 20181213_JW_Orientia_Karp_1_3 379.83 295.83 1310700000 344400000 182340000 190830000 74209000 150570000 72827000 295500000 0 6897 1251 5900 41683;41684;41685;41686;41687;41688;41689;41690 26609;26610;26611;26612;26613;26614;26615;26616;26617;26618;26619 26612 11 NIEDVIAQGIGK Unmodified 1255.6772 0.67721588 238 A0A024RCA7;P05387;H0YDD8 RPLP2 60S acidic ribosomal protein P2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 1 1 2 4 60.476 60.781 2 6.3199E-40 21011 20181213_JW_Orientia_Karp_3_1 256.48 182.22 4422900000 850170000 930150000 841320000 364550000 620340000 444130000 343580000 28695000 6898 238 5901 41691;41692;41693;41694;41695;41696;41697;41698;41699;41700;41701;41702;41703;41704;41705;41706 26620;26621;26622;26623;26624;26625;26626;26627;26628;26629;26630 26627 11 NIEDYDLQIVR Unmodified 1376.6936 0.69359423 1382 Karp_02121 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 57.376 57.654 2 0.036285 24274 20181213_JW_Orientia_Karp_1_1 100.82 55.797 24644000 14701000 0 0 0 2577700 4028300 0 3337200 6899 1382 5902 41707;41708;41709;41710 26631 26631 0 NIEFDFSPK Unmodified 1095.5237 0.52367535 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 56.529 56.795 2 0.00020656 23605 20181213_JW_Orientia_Karp_1_1 182.39 99.64 129570000 40388000 31891000 2163500 18453000 12239000 24433000 0 0 6900 1162 5903 41711;41712;41713;41714;41715;41716;41717 26632;26633;26634;26635;26636;26637 26632 6 NIENGGSLTIIATALVDTGSR Deamidation (NQ) 2102.0855 0.085527129 1333 Karp_01373 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 2 1 1 75.296 75.296 2;3 1.5054E-11 28148 20181213_JW_Orientia_Karp_3_1 171.87 88.824 83135000 34352000 11211000 16749000 2153800 11226000 2206700 5236000 0 6901 1333 5904 41718;41719;41720;41721;41722;41723;41724;41725;41726 26638;26639;26640 26640 769;770 3 NIENGGSLTIIATALVDTGSR 2 Deamidation (NQ) 2103.0695 0.069542713 1333 Karp_01373 yes yes 0 2 0 0 By MS/MS 1 75.464 75.514 2 0.021783 35347 20181213_JW_Orientia_Karp_1_2 79.837 38.595 0 0 0 0 0 0 0 0 0 6902 1333 5904 41727 26641 26641 769;770 1 NIEQANLSEIEK Unmodified 1386.6991 0.69907354 1200 Karp_00819 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 44.947 45.211 2 2.5618E-28 15752 20181213_JW_Orientia_Karp_1_2 237.53 132.42 498840000 119260000 233360000 138230000 0 0 0 0 7988600 6903 1200 5905 41728;41729;41730;41731 26642;26643;26644;26645 26644 3 NIEQNSFNGQLNIEK Deamidation (NQ) 1747.8377 0.83769228 1207 Karp_00849 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.129 51.328 2 4.7872E-06 19536 20181213_JW_Orientia_Karp_1_3 174.46 63.197 39550000 13028000 11940000 11426000 0 0 3155200 0 0 6904 1207 5906 41732;41733;41734;41735;41736 26646;26647;26648;26649 26647 616;1820 4 NIETIINTFHQYSVK Unmodified 1805.9312 0.93119874 446 B2R4M6;P06702 S100A9 Protein S100;Protein S100-A9 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 60.238 60.526 3 0.0076692 23414 20181213_JW_Orientia_Karp_2_3 84.365 42.048 25527000 0 0 5168800 4367800 9176200 6814000 0 0 6905 446 5907 41737;41738;41739;41740 26650;26651 26651 2 NIFWTDSNLDR Unmodified 1379.647 0.64697839 1596 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 By MS/MS By matching 1 1 59.078 59.253 2 0.030569 25206 20181213_JW_Orientia_Karp_1_1 79.201 18.765 12891000 6125200 6765300 0 0 0 0 0 0 6906 1596 5908 41741;41742 26652 26652 1 NIGIGAHIDAGK Unmodified 1164.6251 0.62512073 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 36.185 36.518 2 0.00046069 11074 20181213_JW_Orientia_Karp_1_2 149.94 99.337 135690000 28915000 36009000 36263000 3619800 22069000 0 8812600 0 6907 1094 5909 41743;41744;41745;41746;41747;41748 26653;26654;26655;26656;26657 26654 5 NIGNVEIPQSAFIAALK Unmodified 1783.9832 0.98323431 1304 Karp_01242 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.695 70.812 2 2.3188E-16 32350 20181213_JW_Orientia_Karp_1_1 215.09 157.3 245280000 45875000 48828000 40643000 0 21112000 24072000 64749000 0 6908 1304 5910 41749;41750;41751;41752;41753;41754 26658;26659;26660;26661;26662;26663;26664 26658 7 NIGQQVTNYK Unmodified 1163.5935 0.59348625 1423 Karp_02309 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 33.004 33.275 2 4.4537E-05 9184 20181213_JW_Orientia_Karp_3_1 156.83 98.012 40829000 15351000 0 10991000 0 5173200 3034200 6280200 0 6909 1423 5911 41755;41756;41757;41758;41759;41760;41761 26665;26666;26667;26668;26669;26670 26669 6 NIGTYISSNTK Unmodified 1196.6037 0.60371659 1071 Karp_00042 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 37.722 38.029 2 0.0012305 12317 20181213_JW_Orientia_Karp_1_1 126.03 81.648 77135000 23649000 16259000 14828000 6416800 3747000 2515100 9720100 0 6910 1071 5912 41762;41763;41764;41765;41766;41767;41768 26671;26672;26673;26674;26675;26676 26671 6 NIIDLLLLSTK Unmodified 1241.7595 0.75948895 1443 Karp_02418 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 75.891 75.891 2 0.0013405 35244 20181213_JW_Orientia_Karp_1_3 124.42 104.64 14762000 6324400 0 5785600 0 0 584460 2067100 0 6911 1443 5913 41769;41770;41771;41772 26677 26677 1 NIIDLLLLSTKPTEVK Unmodified 1796.0659 0.065901306 1443 Karp_02418 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 2 1 2 1 72.768 72.842 2;3 1.0293E-05 29743 20181213_JW_Orientia_Karp_2_1 179.46 132.42 398290000 30191000 76697000 20150000 16858000 72798000 27148000 140290000 14162000 6912 1443 5914 41773;41774;41775;41776;41777;41778;41779;41780;41781;41782;41783 26678;26679;26680;26681 26678 4 NIIELPLLDR Unmodified 1194.6972 0.69722304 1361 Karp_01814 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 71.562 71.628 2 0.0034077 28740 20181213_JW_Orientia_Karp_2_2 108.31 63.936 101770000 30241000 12954000 19753000 0 9171300 6708800 22940000 0 6913 1361 5915 41784;41785;41786;41787;41788;41789 26682;26683;26684;26685 26683 4 NIILEEGK Unmodified 914.5073 0.50729701 1625 V9HWI5;P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;B4E112;E9PLJ3;E9PS23 HEL-S-15;CFL1 Cofilin-1 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 39.205 39.642 2 0.01524 12214 20181213_JW_Orientia_Karp_3_1 95.358 23.666 400860000 0 132400000 96820000 139630000 0 0 32012000 0 6914 1625 5916 41790;41791;41792;41793 26686 26686 1 NIILLGIGQSNQLK Unmodified 1509.8879 0.88787736 1349 Karp_01525 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 63.09 63.377 2 0.0009681 23797 20181213_JW_Orientia_Karp_3_2 136.38 88.092 107960000 25244000 34594000 23201000 0 12642000 9138100 192330 2944100 6915 1349 5917 41794;41795;41796;41797;41798;41799;41800 26687;26688;26689 26689 2 NIINLSAETR Unmodified 1129.6091 0.60913632 1116 Karp_00304 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 46.717 46.99 2 0.00064178 17221 20181213_JW_Orientia_Karp_1_1 131.52 50.22 69177000 20309000 15941000 13887000 4085900 4507900 6651500 0 3795000 6916 1116 5918 41801;41802;41803;41804;41805;41806;41807 26690;26691;26692;26693 26690 4 NIIQQAIDAGEVPSYNAFVK Unmodified 2176.1164 0.11643333 18 A0A024QZN2;Q8WXX5;Q2VIL4 hCG_2024613;DNAJC9 DnaJ homolog subfamily C member 9 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 70.92 71.002 2 0.03857 31943 20181213_JW_Orientia_Karp_1_3 80.387 54.263 16785000 6719400 5837800 4227700 0 0 0 0 0 6917 18 5919 41808;41809;41810 26694 26694 1 NIIQQLK 2 Deamidation (NQ) 857.48583 0.48583328 740 E7EQW0;B7ZLE8;Q13075-2;Q13075 NAIP Baculoviral IAP repeat-containing protein 1 yes no 0 2 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 45.949 46.271 1 0.026441 16179 20181213_JW_Orientia_Karp_1_3 62.715 8.5101 17522000 5025200 0 6025000 0 0 2660600 1280700 2530300 6918 740 5920 41811;41812;41813;41814;41815 26695 26695 1621;1622 1 NIISLSVGELNFDTPDNIK Unmodified 2088.0739 0.07389981 1089 Karp_00229 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 72.871 72.917 2;3 2.5106E-102 33607 20181213_JW_Orientia_Karp_1_2 315.47 255.39 299720000 61453000 66620000 46826000 0 14518000 17898000 59228000 33177000 6919 1089 5921 41816;41817;41818;41819;41820;41821;41822;41823;41824 26696;26697;26698;26699;26700;26701;26702;26703 26697 7 NIKPPKLEGIASSLSK Unmodified 1680.9774 0.97742065 1268 Karp_01076 yes yes 0 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 44.116 44.458 3 0.0070817 14430 20181213_JW_Orientia_Karp_3_1 118.2 82.545 66440000 18531000 22510000 15115000 0 0 0 10235000 49249 6920 1268 5922 41825;41826;41827;41828;41829;41830 26704;26705 26705 2 NILAEQLQAETELFAEAEEMR Oxidation (M) 2450.1635 0.16351945 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 73.844 73.859 3 0.0050655 34217 20181213_JW_Orientia_Karp_1_1 90.765 61.594 14559000 9522800 0 4841500 194530 0 0 0 0 6921 944 5923 41831;41832;41833 26706 26706 534 1 NILAIEPILSFPGLLDPNPK Unmodified 2160.2194 0.21944183 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 77.381 77.364 2;3 0.00022047 36211 20181213_JW_Orientia_Karp_1_3 135.55 127.25 102220000 41173000 0 22647000 5622300 6850400 7390700 18534000 0 6922 1320 5924 41834;41835;41836;41837;41838;41839;41840;41841;41842;41843;41844;41845 26707;26708;26709;26710 26708 4 NILEEMLIR Oxidation (M) 1145.6114 0.6114445 1147 Karp_00502 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.56 54.77 2 0.00067535 20050 20181213_JW_Orientia_Karp_2_2 137.13 68.748 92398000 31031000 18760000 23351000 0 8930100 10326000 0 0 6923 1147 5925 41846;41847;41848;41849;41850;41851 26711;26712;26713;26714;26715;26716 26715 680 6 NILEEMLIR Unmodified 1129.6165 0.61652988 1147 Karp_00502 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.784 67.961 2 0.00024465 30230 20181213_JW_Orientia_Karp_1_2 174.02 94.31 62485000 17360000 5164300 27331000 0 5723700 3484700 0 3420900 6924 1147 5925 41852;41853;41854;41855;41856;41857 26717;26718;26719;26720;26721;26722 26718 6 NILFVITKPDVYK Unmodified 1548.8916 0.89156576 213 F8VZJ2;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3-2;E9PAV3;F8W1N5;F8VNW4;F8VZ58;A8K6N6;Q9BZK3 NACA;hCG_2016482;NACAP1 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Putative nascent polypeptide-associated complex subunit alpha-like protein yes no 0 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 58.561 58.848 2 7.2674E-06 22264 20181213_JW_Orientia_Karp_2_2 187.31 151.77 101510000 10844000 16401000 15311000 16140000 26038000 13925000 0 2853700 6925 213 5926 41858;41859;41860;41861;41862;41863;41864 26723 26723 1 NILKPVSNNNPANSEAADSSVEITAHLNELK Unmodified 3288.6586 0.65861229 1333 Karp_01373 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 52.797 53.142 4 0.035955 19103 20181213_JW_Orientia_Karp_2_2 35.286 17.543 164570000 52529000 26148000 25889000 15118000 21401000 12429000 9288000 1767400 6926 1333 5927 41865;41866;41867;41868;41869;41870;41871;41872 26724 26724 1 NILTEIYR Unmodified 1020.5604 0.56039521 1811 Q15907 RAB11B Ras-related protein Rab-11B yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 54.76 55.026 2 0.038044 22586 20181213_JW_Orientia_Karp_1_1 78.113 49.895 44168000 13803000 10807000 7938700 2042800 3402700 6173400 0 0 6927 1811 5928 41873;41874;41875;41876;41877;41878 26725 26725 1 NIMDVLLQNQQK Unmodified 1442.7551 0.75514863 1205 Karp_00841 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 64.815 65.015 2 5.7673E-31 28463 20181213_JW_Orientia_Karp_1_2 252.16 168.16 35564000 15300000 9037300 9955000 0 0 0 1271600 0 6928 1205 5929 41879;41880;41881;41882;41883;41884 26726;26727;26728 26726 3 NIMNIINSIAER Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1446.7024 0.70244436 1082 Karp_00117 yes yes 1 2 1 0 By MS/MS 1 39.315 39.466 2 0.018333 11597 20181213_JW_Orientia_Karp_2_2 65.157 8.7257 59460000 0 0 0 0 59460000 0 0 0 6929 1082 5930 41885 26729 26729 431;432 599 1 NINCTYIDVLCDDDLR Unmodified 1997.8823 0.88227599 1199 Karp_00818 yes yes 0 0 0 0 By MS/MS 1 65.753 66.162 2 2.671E-05 25538 20181213_JW_Orientia_Karp_3_2 156.6 118.36 6076600 0 0 0 0 0 0 0 6076600 6930 1199 5931 41886 26730;26731 26731 2 NINEAYDTLK Unmodified 1179.5772 0.57716749 1073 Karp_00049 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.716 41.046 2 1.1991E-06 12728 20181213_JW_Orientia_Karp_2_1 185.33 108.04 479320000 150500000 113120000 92327000 31947000 24343000 0 58377000 8703800 6931 1073 5932 41887;41888;41889;41890;41891;41892;41893 26732;26733;26734;26735;26736;26737;26738 26735 7 NINISGNTITQDHVIR Unmodified 1793.9384 0.93840938 1444 Karp_02422 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.313 45.413 3 0.024536 15694 20181213_JW_Orientia_Karp_1_3 58.071 24.289 73618000 52744000 0 20874000 0 0 0 0 0 6932 1444 5933 41894;41895;41896 26739;26740;26741 26741 3 NINNNSDFTYK Deamidation (NQ) 1329.5837 0.58370943 1358 Karp_01807 yes yes 0 1 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 40.788 41.09 2 0.02456 13511 20181213_JW_Orientia_Karp_1_2 90.15 48.61 22343000 9251900 4812300 7038500 794150 0 0 0 445900 6933 1358 5934 41897;41898;41899;41900;41901 26742 26742 817;818 1 NINYVLEQLAK Unmodified 1303.7136 0.71360139 1348 Karp_01524 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 61.007 61.22 2 1.5779E-07 26496 20181213_JW_Orientia_Karp_1_1 191.4 108.97 31334000 13971000 8640100 0 0 4907700 3815300 0 0 6934 1348 5935 41902;41903;41904;41905;41906 26743;26744;26745;26746 26743 4 NIQAEIVDATPR Unmodified 1325.6939 0.69392858 1210 Karp_00870 yes yes 0 0 0 0 By MS/MS 1 48.73 48.928 2 0.017929 17821 20181213_JW_Orientia_Karp_1_3 102.05 32.42 0 0 0 0 0 0 0 0 0 6935 1210 5936 41907 26747 26747 1 NIQATLHQK Unmodified 1051.5774 0.57744226 1801 Q15075;A8K7J3 EEA1 Early endosome antigen 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 22.817 23.018 2 0.0091635 4024 20181213_JW_Orientia_Karp_2_2 95.741 39.195 3254800 1047100 0 0 0 1201400 1006300 0 0 6936 1801 5937 41908;41909;41910 26748 26748 1 NIQEEVTLGR Unmodified 1157.6041 0.60405094 1358 Karp_01807 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 43.246 43.659 2 0.0005278 14774 20181213_JW_Orientia_Karp_1_3 133.81 78.438 88991000 0 40660000 34815000 6127000 0 0 7389000 0 6937 1358 5938 41911;41912;41913;41914 26749;26750;26751 26750 3 NIQLDDIK Unmodified 957.51311 0.51311067 1211 Karp_00873 yes yes 0 0 0 0 By matching By MS/MS 1 1 43.713 44.138 2 0.016612 14453 20181213_JW_Orientia_Karp_3_1 93.143 43.702 11312000 0 0 9508800 0 0 0 1803100 0 6938 1211 5939 41915;41916 26752 26752 1 NIQQISDPNQIADIIDDVLK Deamidation (NQ) 2252.1536 0.15360669 1317 Karp_01279 yes yes 0 1 0 0 By MS/MS By matching By matching 1 1 1 68.89 69.076 3 0.029488 31172 20181213_JW_Orientia_Karp_1_1 70.615 28.389 12515000 5393000 0 0 0 0 0 5219000 1902700 6939 1317 5940 41917;41918;41919 26753 26753 750 1 NIQQISDPNQIADIIDDVLK Unmodified 2251.1696 0.16959111 1317 Karp_01279 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 76.673 76.665 2;3 4.4072E-109 31472 20181213_JW_Orientia_Karp_2_1 355.95 295.87 608060000 161580000 84869000 86036000 56074000 52105000 41491000 125900000 0 6940 1317 5940 41920;41921;41922;41923;41924;41925;41926;41927;41928;41929;41930;41931;41932;41933 26754;26755;26756;26757;26758;26759;26760;26761;26762;26763;26764;26765;26766;26767 26761 14 NIQVATDFK Unmodified 1034.5397 0.53965977 1445 Karp_02423 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 43.243 43.545 2 0.00068468 14835 20181213_JW_Orientia_Karp_1_2 152.06 76.872 324840000 94761000 103540000 74478000 0 7676300 9162000 33711000 1508600 6941 1445 5941 41934;41935;41936;41937;41938;41939;41940 26768;26769;26770;26771;26772;26773;26774 26769 7 NIQVSHQEFSK Unmodified 1315.6521 0.65206377 576 B7Z5C1;B4DHD2;Q4W4Y1;Q8WUM4;Q8WUM4-2 DRIP4;PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 28.43 28.818 2 0.00064938 7273 20181213_JW_Orientia_Karp_1_3 134.84 57.527 3970700 0 0 2648700 539030 0 223530 559440 0 6942 576 5942 41941;41942;41943;41944 26775;26776 26775 2 NISDPVSNCIVANLSGSALSDVQK Unmodified 2487.2275 0.22751669 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 69.209 69.319 2 1.4545E-28 30884 20181213_JW_Orientia_Karp_1_3 205.15 163.32 70728000 13832000 0 18404000 0 7672900 7369600 23449000 0 6943 1178 5943 41945;41946;41947;41948;41949 26777;26778;26779;26780;26781 26778 5 NISPLWEMTQK Oxidation (M) 1361.6649 0.66493664 1276 Karp_01108 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 49.971 50.221 2 0.00045404 19333 20181213_JW_Orientia_Karp_1_1 139.31 72.956 314620000 79247000 86094000 76695000 30550000 10708000 31327000 0 0 6944 1276 5944 41950;41951;41952;41953;41954;41955 26782;26783;26784 26782 843 3 NITEINDEESFK Unmodified 1437.6624 0.66235368 1445 Karp_02423 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 45.186 45.498 2 4.6441E-31 16278 20181213_JW_Orientia_Karp_1_1 252.97 178.8 477210000 132320000 95173000 105850000 43666000 27497000 38104000 15075000 19526000 6945 1445 5945 41956;41957;41958;41959;41960;41961;41962;41963;41964 26785;26786;26787;26788;26789;26790;26791;26792;26793 26785 9 NITEINDEESFK Deamidation (NQ) 1438.6464 0.64636926 1445 Karp_02423 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 47.949 48.199 2 0.0016397 16743 20181213_JW_Orientia_Karp_2_3 136.81 86.766 71624000 13186000 22084000 18634000 9529000 1495600 6695500 0 0 6946 1445 5945 41965;41966;41967;41968;41969;41970;41971 26794;26795;26796 26795 968 3 NITEINDEESFKQEVLLSPK Unmodified 2332.1798 0.17982144 1445 Karp_02423 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 55.992 56.365 3 1.5289E-07 22577 20181213_JW_Orientia_Karp_1_3 157.84 96.017 227520000 45418000 43941000 83690000 18764000 0 22191000 7125700 6386900 6947 1445 5946 41972;41973;41974;41975;41976;41977;41978 26797;26798;26799;26800;26801;26802;26803 26799 7 NITETVGLDNALNSIIK Deamidation (NQ) 1814.9626 0.96255845 1428 Karp_02381 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 66.019 66.185 2 0.00086426 29116 20181213_JW_Orientia_Karp_1_2 128.95 72.746 39463000 8525400 7424900 11762000 0 3267200 2744600 5738500 0 6948 1428 5947 41979;41980;41981;41982;41983;41984 26804;26805;26806;26807 26805 947 4 NITETVGLDNALNSIIK Unmodified 1813.9785 0.97854286 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.883 71.003 3 9.2541E-07 28452 20181213_JW_Orientia_Karp_2_2 154.31 95.656 29170000 0 9481900 2255800 0 5512800 3205300 8714400 0 6949 1428 5947 41985;41986;41987;41988;41989;41990 26808;26809;26810;26811;26812 26810 5 NITGLALK Deamidation (NQ) 829.49092 0.49091866 1171 Karp_00625 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 58.431 58.708 2 0.029688 24237 20181213_JW_Orientia_Karp_1_3 93.143 21.266 53345000 45693000 3425900 0 0 0 3700200 0 525370 6950 1171 5948 41991;41992;41993;41994;41995 26813;26814 26814 575 2 NITGLALK Unmodified 828.5069 0.50690308 1171 Karp_00625 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 44.187 44.529 2 0.0099327 14886 20181213_JW_Orientia_Karp_2_3 104.06 4.6818 2163200000 0 1332400000 582780000 43354000 84511000 39993000 80121000 0 6951 1171 5948 41996;41997;41998;41999;42000;42001 26815;26816 26815 2 NITGQEAEYLLDAAGITCNK Unmodified 2180.0419 0.041947754 1140 Karp_00452 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 69.164 69.308 2;3 5.5982E-48 27362 20181213_JW_Orientia_Karp_3_2 278.79 234.28 340930000 73296000 12741000 63952000 0 42561000 24163000 93632000 30586000 6952 1140 5949 42002;42003;42004;42005;42006;42007;42008;42009;42010;42011;42012;42013;42014 26817;26818;26819;26820;26821;26822;26823;26824;26825;26826 26825 9 NITLGIVYIK Unmodified 1132.6856 0.68559572 1220 Karp_00887 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 62.956 63.283 2 0.00051855 26961 20181213_JW_Orientia_Karp_1_3 133.99 91.129 22812000 0 6545700 8439200 0 6900900 0 0 926620 6953 1220 5950 42015;42016;42017;42018;42019;42020 26827;26828;26829;26830;26831 26828 5 NITLPSVNLK Unmodified 1097.6445 0.64445919 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 55.795 56.19 2 6.1007E-06 22479 20181213_JW_Orientia_Karp_1_3 169.12 102.85 358940000 93292000 61497000 88495000 13074000 52187000 0 49538000 853140 6954 1396 5951 42021;42022;42023;42024;42025;42026;42027;42028 26832;26833;26834;26835;26836;26837 26834 6 NITPLMNIVQPFQILK Oxidation (M) 1884.0543 0.054290762 1095 Karp_00244 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 73.559 73.603 2 1.8873E-05 27328 20181213_JW_Orientia_Karp_3_1 158.01 97.522 157200000 44726000 30912000 46548000 2898000 7576200 0 14682000 9861900 6955 1095 5952 42029;42030;42031;42032;42033;42034;42035 26838;26839;26840 26839 616 3 NITPLMNIVQPFQILK Unmodified 1868.0594 0.05937614 1095 Karp_00244 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 75.165 75.194 2 0.0080685 35165 20181213_JW_Orientia_Karp_1_2 98.368 59.695 119670000 48008000 30736000 30451000 3853000 0 0 6620500 0 6956 1095 5952 42036;42037;42038;42039;42040 26841 26841 1 NITYLPAGQSVLLQLPQ Unmodified 1854.0251 0.025099124 354 Q6PUJ7;Q6FHP5;Q53FV0;A8K401;P35232 HEL-S-54e;PHB Prohibitin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 75.881 75.867 2 6.4296E-05 35527 20181213_JW_Orientia_Karp_1_1 171.73 136.21 118230000 55210000 0 29407000 2733500 5753600 5511400 17101000 2512000 6957 354 5953 42041;42042;42043;42044;42045;42046;42047 26842;26843;26844 26842 3 NIVEAAAVR Unmodified 941.52943 0.52942943 212 Q75MH1;A0A024RB14;P62854;Q5JNZ5;Q76N57 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 37.575 37.909 2 0.0012209 11836 20181213_JW_Orientia_Karp_1_2 128.6 67.63 99475000 16348000 40486000 33209000 2574700 0 1827400 5031400 0 6958 212 5954 42048;42049;42050;42051;42052;42053 26845;26846;26847 26846 3 NIVLSGGSTMFR Oxidation (M) 1296.6496 0.64962092 201 A0A024RAI1;P61158;B4DXW1;B4DT29;Q59FV6;B4DTI0;B4E1U3 ACTR3 Actin-related protein 3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 46.732 47.092 2 0.0015322 16554 20181213_JW_Orientia_Karp_1_3 123.67 76.097 97679000 33238000 26079000 16905000 9565300 0 0 1561100 10330000 6959 201 5955 42054;42055;42056;42057;42058;42059 26848;26849;26850;26851;26852 26851 154 5 NIYAIGDVIK Unmodified 1104.6179 0.61791009 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 56.478 56.745 2 2.5726E-05 23226 20181213_JW_Orientia_Karp_1_2 162.64 85.318 372390000 76067000 101910000 59769000 46757000 31797000 56090000 0 0 6960 1066 5956 42060;42061;42062;42063;42064;42065 26853;26854;26855;26856;26857;26858 26854 6 NIYSEELR Unmodified 1022.5033 0.50327426 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 38.829 39.179 2 0.0082351 12485 20181213_JW_Orientia_Karp_1_2 109.48 20.835 264420000 125640000 56090000 53681000 14986000 0 0 14020000 0 6961 1543;1544;1851 5957 42066;42067;42068;42069;42070 26859;26860;26861;26862;26863 26860 5 NIYVLQELDNPGAK Unmodified 1572.8148 0.814772 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 59.833 60.016 2 0.0010642 25737 20181213_JW_Orientia_Karp_1_1 136.27 94.032 66176000 25188000 19769000 21219000 0 0 0 0 0 6962 48 5958 42071;42072;42073 26864;26865;26866 26864 3 NIYYITGDDLEALK Unmodified 1626.8141 0.8141033 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 64.366 64.582 2 1.4555E-34 28176 20181213_JW_Orientia_Karp_1_2 286.19 196.04 835540000 247120000 197790000 193350000 0 99553000 63937000 430780 33356000 6963 1251 5959 42074;42075;42076;42077;42078;42079;42080;42081 26867;26868;26869;26870;26871;26872;26873;26874 26868 8 NKAESIIYTTEK Unmodified 1395.7246 0.72456001 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 32.103 32.436 2 1.1727E-09 9106 20181213_JW_Orientia_Karp_1_2 209.8 137.57 302540000 55686000 90029000 56661000 19590000 27470000 0 53101000 0 6964 1074 5960 42082;42083;42084;42085;42086;42087;42088 26875;26876;26877;26878;26879;26880;26881 26876 7 NKDQGTYEDYVEGLR Deamidation (NQ) 1786.801 0.80097243 724 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660-2;P60660;G3V1Y7;Q6IBG5;F8VPF3;F8VZU9;F8W180 MYL6 Myosin light polypeptide 6 yes no 0 1 0 1 By MS/MS 1 51.65 52.199 3 0.040593 18739 20181213_JW_Orientia_Karp_2_1 64.407 36.545 2128100 0 0 0 2128100 0 0 0 0 6965 724 5961 42089 26882 26882 0 NKHEAMITDLEER Oxidation (M) 1600.7515 0.75151981 47 A0A024R1N1;P35579;Q86XU5;Q99529 MYH9 Myosin-9 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 27.233 27.592 3 0.0004333 7231 20181213_JW_Orientia_Karp_1_1 160.46 121.68 84464000 14864000 32559000 15664000 0 1267200 2186000 11346000 6578700 6966 47 5962 42090;42091;42092;42093;42094;42095;42096 26883;26884;26885;26886;26887 26883 37 5 NKLEGLEDALQK Unmodified 1356.7249 0.72489436 341;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT6B;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 42.905 43.13 3 0.041438 14400 20181213_JW_Orientia_Karp_1_3 89.663 42.678 10163000 7115200 0 2317800 485100 0 245160 0 0 + 6967 341;793;805 5963 42097;42098;42099;42100 26888 26888 1 NKLNDLEDALQQAK Unmodified 1598.8264 0.82639932 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 3 49.59 49.946 2;3 1.1563E-103 16479 20181213_JW_Orientia_Karp_3_2 317.44 208 792200000 40937000 57038000 23786000 242600000 212080000 127010000 0 88748000 + 6968 995;996 5964 42101;42102;42103;42104;42105;42106;42107;42108;42109;42110;42111;42112;42113 26889;26890;26891;26892;26893;26894;26895;26896 26895 7 NKLNDLEDALQQAK Deamidation (NQ) 1599.8104 0.8104149 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 1 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 1 1 1 48.039 48.427 2;3 0.032277 15706 20181213_JW_Orientia_Karp_3_2 86.467 21.172 47923000 0 0 10955000 18362000 12314000 2389600 621210 3281300 + 6969 995;996 5964 42114;42115;42116;42117;42118;42119;42120;42121 26897;26898 26898 354;355 1 NKLNDLEDALQQAKEDLAR Unmodified 2183.1182 0.11822424 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 60.162 60.584 3 0.0014537 25764 20181213_JW_Orientia_Karp_1_2 120.08 81.984 27508000 0 10797000 0 5078500 0 6481800 3427200 1723900 + 6970 995;996 5965 42122;42123;42124;42125;42126;42127 26899;26900 26899 2 NKLNDLEEALQQAK Unmodified 1612.842 0.84204938 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 2 1 2 1 50.824 51.157 2;3 5.0666E-12 17379 20181213_JW_Orientia_Karp_3_1 206.32 106.82 169070000 16739000 29188000 10929000 31787000 30743000 5220700 40397000 4066800 + 6971 804;1657 5966 42128;42129;42130;42131;42132;42133;42134;42135;42136;42137;42138;42139;42140;42141;42142 26901;26902;26903;26904;26905;26906;26907 26906 7 NKLQQEFFYEFEGGVK 2 Deamidation (NQ) 1963.9204 0.92035928 1856 Q5VTQ0-5;Q5VTQ0-2;Q5VTQ0-6;Q5VTQ0-3;Q5VTQ0-4;Q5VTQ0 TTC39B Tetratricopeptide repeat protein 39B yes no 0 2 0 1 By MS/MS 1 40.943 41.392 3 0.042882 12893 20181213_JW_Orientia_Karp_2_1 45.207 10.116 2450600 0 0 0 2450600 0 0 0 0 6972 1856 5967 42143 26908 26908 2008;2009 0 NKPIIWNDLIK Unmodified 1352.7816 0.78162138 1285 Karp_01156 yes yes 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 51.944 52.232 3 0.039002 20333 20181213_JW_Orientia_Karp_1_2 75.416 44.13 20628000 7354500 4878200 0 5368100 0 3027600 0 0 6973 1285 5968 42144;42145;42146;42147 26909 26909 1 NKYEDEINHR Unmodified 1316.6109 0.61092723 811 CON__Q3KNV1;P08729 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 22.132 22.441 3 0.0016909 4565 20181213_JW_Orientia_Karp_1_3 121.36 85.65 7214100 0 2417900 1617900 653320 542150 454960 1527800 0 + 6974 811 5969 42148;42149;42150;42151;42152;42153 26910;26911 26911 2 NKYEDEINK Unmodified 1151.5459 0.54586736 995;996;799;341;679;793;805 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;CON__H-INV:HIT000016045;F8VP67;H6VRG2;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;B4E1T1;B4DL32;CON__P04259;P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;B2R853 KRT1;KRT8;KRT6A;KRT6B;KRT5;KRT6C Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 1 22.975 23.266 2;3 0.0055708 5329 20181213_JW_Orientia_Karp_1_1 176.44 71.309 37700000 5892100 3462900 720580 8514300 5993400 4901300 5046600 3168600 + 6975 995;996;341;679;793;799;805 5970 42154;42155;42156;42157;42158;42159;42160;42161;42162;42163;42164;42165 26912;26913;26914;26915;26916;26917;26918;26919;26920 26912 8 NKYEDEINKR Unmodified 1307.647 0.64697839 995;996;799;341;679;793;805 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;CON__H-INV:HIT000016045;F8VP67;H6VRG2;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;B4E1T1;B4DL32;CON__P04259;P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;B2R853 KRT1;KRT8;KRT6A;KRT6B;KRT5;KRT6C Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 0 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.499 21.844 3 0.0041264 4188 20181213_JW_Orientia_Karp_2_3 133.91 90.232 266000000 12385000 27823000 21972000 67651000 34395000 44491000 33692000 23590000 + 6976 995;996;341;679;793;799;805 5971 42166;42167;42168;42169;42170;42171;42172;42173 26921;26922;26923;26924;26925;26926 26924 6 NLADIGFSADEIK Unmodified 1391.6933 0.69325988 1142 Karp_00456 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 60.493 60.859 2 5.1965E-05 21128 20181213_JW_Orientia_Karp_3_1 170.66 117.93 105620000 0 25436000 23405000 10308000 19003000 13772000 2110600 11581000 6977 1142 5972 42174;42175;42176;42177;42178;42179;42180 26927;26928;26929;26930;26931;26932 26930 6 NLAGSQIDIGK Unmodified 1114.5982 0.59823728 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.567 42.834 2 1.9009E-07 14392 20181213_JW_Orientia_Karp_1_2 190.57 130.14 410560000 123620000 91067000 120910000 0 21724000 8933100 44307000 0 6978 1273 5973 42181;42182;42183;42184;42185;42186;42187 26933;26934;26935;26936;26937;26938;26939 26934 7 NLAQVSAGDEIEVK Unmodified 1471.7518 0.75183739 1288 Karp_01160 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 47.434 47.792 2 6.1792E-12 17318 20181213_JW_Orientia_Karp_1_2 205.12 141.94 58977000 7750700 13942000 11450000 9799400 7686000 0 1210200 7138000 6979 1288 5974 42188;42189;42190;42191;42192;42193;42194 26940;26941;26942;26943;26944;26945;26946 26941 7 NLDFQDVLDK Unmodified 1205.5928 0.59281755 2011 Q9Y3I0;B4DNA0 RTCB tRNA-splicing ligase RtcB homolog yes no 0 0 0 0 By MS/MS By MS/MS 1 1 60.992 61.266 2 0.0012478 26148 20181213_JW_Orientia_Karp_1_2 119.34 53.065 22238000 0 9038300 13199000 0 0 0 0 0 6980 2011 5975 42195;42196 26947;26948 26947 2 NLDIERPTYTNLNR Unmodified 1717.8747 0.87474649 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68366-2;P68366;B4DDU2;F8VVB9;C9JDS9;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;Q13748-2;Q6PEY2;C9J2C0;Q9NY65-2;Q9NY65;F8VQQ4;Q7Z3M3 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA3E;TUBA8;DKFZp686L04275 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain no no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.509 44.829 3 0.03312 15450 20181213_JW_Orientia_Karp_1_3 96.464 42.122 571090000 130830000 227410000 153270000 4338300 8726800 18292000 27319000 901500 6981 512;1887 5976 42197;42198;42199;42200;42201;42202;42203;42204 26949 26949 1 NLDLDSIIAEVK Unmodified 1328.7187 0.71874635 804;1657;996;799;341;679;793;805 H6VRG2;CON__P35908;P35908;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;CON__O95678;O95678;B4E1T1;B4DL32;H0YIN9;H0YI76;CON__P04259;P04259;B4DKV4;CON__P13647;P13647;CON__P48668;P48668;B2R853;B4DRY0 KRT1;KRT2;KRT6A;KRT75;KRT5;KRT6B;KRT6C Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.629 72.698 2 1.7265E-64 33103 20181213_JW_Orientia_Karp_1_3 292.33 163.47 1832100000 240950000 99141000 124670000 5943000 488390000 139950000 665280000 67832000 + 6982 996;804;1657;341;679;793;799;805 5977 42205;42206;42207;42208;42209;42210;42211;42212 26950;26951;26952;26953;26954;26955;26956;26957;26958 26953 9 NLDSLEEDLDFLR Unmodified 1577.7573 0.7573167 841 D3DWY7;P61758;Q6FH24;F5H2A7;B4DWR3 VBP1 Prefoldin subunit 3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 73.73 73.763 2 5.1501E-05 34129 20181213_JW_Orientia_Karp_1_1 193.49 136.34 23349000 13289000 8965300 0 1094900 0 0 0 0 6983 841 5978 42213;42214;42215;42216 26959;26960;26961 26959 3 NLDSTTVAVHGEEIYCK Unmodified 1934.9044 0.90439164 662 Q9BTA4;B4DY28;Q6ZMS3;P21291;B4E2T4;E9PS42;E9PND2;Q59EQ5;B3KVC9 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 43.805 44.105 3 0.02937 14197 20181213_JW_Orientia_Karp_2_2 72.175 37.265 125730000 13261000 29106000 16059000 21881000 18887000 0 26537000 0 6984 662 5979 42217;42218;42219;42220;42221;42222 26962;26963;26964 26963 3 NLEFQGPLEISR Unmodified 1401.7252 0.72522871 307 F5H4Q5;B4DYD9;A5D8V6 VPS37C Vacuolar protein sorting-associated protein 37C yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 60.046 60.367 2 0.0072289 23379 20181213_JW_Orientia_Karp_2_3 114.82 45.97 26399000 0 7720500 7465800 0 6032100 4910200 270190 0 6985 307 5980 42223;42224;42225;42226;42227;42228 26965;26966;26967;26968 26968 4 NLEGEIIGK Unmodified 971.52876 0.52876073 1111 Karp_00293 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 43.944 44.21 2 0.0045825 14460 20181213_JW_Orientia_Karp_2_1 106.2 36.815 43468000 19052000 21864000 0 2551400 0 0 0 0 6986 1111 5981 42229;42230;42231 26969 26969 1 NLEIPPYQFITDK Unmodified 1576.8137 0.81370936 1338 Karp_01468 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 67.176 67.392 2 0.032885 26415 20181213_JW_Orientia_Karp_2_2 77.387 24.897 72280000 21912000 10220000 13877000 0 11722000 5144300 116190 9289400 6987 1338 5982 42232;42233;42234;42235;42236;42237;42238 26970;26971 26971 2 NLEPEWAAAASEVK Unmodified 1513.7413 0.7412727 1802 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 55.231 55.505 2 1.4863E-05 22395 20181213_JW_Orientia_Karp_1_2 174.46 109.19 167760000 52574000 46730000 59109000 9352200 0 0 0 0 6988 1802 5983 42239;42240;42241;42242;42243 26972;26973;26974;26975 26973 4 NLESHLMSPAEIPGQPVPK Oxidation (M) 2059.0408 0.040825542 44 B0QYZ7;A0A024R1K0;Q9NRA8-2;Q9NRA8;Q9NRA8-3 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 77.055 77.022 2 0.025011 28939 20181213_JW_Orientia_Karp_3_1 70.628 13.061 46771000 8141900 0 0 0 0 1558600 37070000 0 6989 44 5984 42244;42245;42246 26976 26976 26 1 NLFNHHSSDDK Unmodified 1312.5796 0.5796271 1420 Karp_02261 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 18.621 18.851 3 0.041934 3456 20181213_JW_Orientia_Karp_1_2 50.194 18.701 8056400 2430300 1946000 2787600 591770 0 0 300780 0 6990 1420 5985 42247;42248;42249;42250;42251 26977 26977 1 NLGMMDFNTATK Unmodified 1341.6057 0.6057072 1364 Karp_01859 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 54.168 54.351 2 0.024554 22176 20181213_JW_Orientia_Karp_1_1 83.081 42.052 28595000 13730000 9054200 5810800 0 0 0 0 0 6991 1364 5986 42252;42253;42254 26978 26978 1 NLGMMDFNTATK 2 Oxidation (M) 1373.5955 0.59553644 1364 Karp_01859 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS 1 1 1 37.385 37.636 2 0.00058474 10557 20181213_JW_Orientia_Karp_2_2 136.81 92.382 9347400 0 0 0 0 9347400 0 0 0 6992 1364 5986 42255;42256;42257 26979;26980;26981 26981 941;942 3 NLGMMDFNTATK Oxidation (M) 1357.6006 0.60062182 1364 Karp_01859 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 46.766 47.067 2 0.0259 16878 20181213_JW_Orientia_Karp_1_2 111.5 83.098 40745000 14063000 11494000 9326800 3110600 0 0 0 2750500 6993 1364 5986 42258;42259;42260;42261;42262 26982 26982 941;942 0 NLGSINTELQDVQR Unmodified 1585.806 0.80599822 1521 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 50.433 50.795 2 0.00079387 17199 20181213_JW_Orientia_Karp_3_1 140.01 87.839 44930000 16457000 13940000 10642000 0 0 0 2837300 1054600 6994 1521 5987 42263;42264;42265;42266;42267 26983 26983 1 NLGTALAELR Unmodified 1056.5928 0.59275797 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 51.987 52.332 2 1.2724E-06 20454 20181213_JW_Orientia_Karp_1_2 184.71 94.335 126930000 43710000 27661000 20556000 15951000 7376900 10049000 1319300 308820 6995 2016 5988 42268;42269;42270;42271;42272;42273;42274;42275 26984;26985;26986;26987;26988 26985 5 NLHISEPQYFDQAAK Unmodified 1759.8529 0.85294842 1116 Karp_00304 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 46.165 46.438 3 0.0015684 16501 20181213_JW_Orientia_Karp_1_2 153.14 113.71 240170000 109830000 53671000 36859000 12226000 5303200 14757000 0 7526900 6996 1116 5989 42276;42277;42278;42279;42280;42281;42282 26989;26990;26991;26992;26993;26994;26995 26990 7 NLIANIEHLTK Unmodified 1264.7139 0.71393574 1382 Karp_02121 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 50.399 50.716 3 0.030613 17918 20181213_JW_Orientia_Karp_2_2 57.019 11.883 11409000 0 0 0 6761400 3106700 1540600 0 0 6997 1382 5990 42283;42284;42285 26996 26996 1 NLIEQIGLLYQEYRDK 2 Deamidation (NQ) 1996.0153 0.015322298 617 B4DV69;B4DPF7;Q8N5V2-2;Q8N5V2-3;Q8N5V2 NGEF Ephexin-1 yes no 0 2 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 46.134 46.472 3 0.040938 16790 20181213_JW_Orientia_Karp_1_1 54.094 9.0801 521540000 180130000 165360000 0 61050000 36392000 56948000 4904000 16759000 6998 617 5991 42286;42287;42288;42289;42290;42291;42292 26997 26997 1545;1546 1 NLIPFDQMTIEDLNEAFPETK Oxidation (M) 2480.1781 0.17810688 1526 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 74.079 74.088 2;3 0.0093254 34315 20181213_JW_Orientia_Karp_1_1 82.189 54.47 147210000 62136000 36787000 35247000 7516000 0 5521700 0 0 6999 1526 5992 42293;42294;42295;42296;42297;42298;42299;42300;42301;42302 26998;26999;27000;27001;27002 26998 1139 5 NLIPFDQMTIEDLNEAFPETK Unmodified 2464.1832 0.18319226 1526 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1 75.119 75.145 2;3 0.0044315 35058 20181213_JW_Orientia_Karp_1_1 95.873 66.406 140150000 69657000 44401000 9914700 0 5236800 0 8755300 2181100 7000 1526 5992 42303;42304;42305;42306;42307;42308;42309;42310 27003;27004;27005;27006 27003 4 NLISEPPNK Unmodified 1010.5397 0.53965977 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.098 35.455 2 0.0011635 9828 20181213_JW_Orientia_Karp_2_1 129.42 66.115 227020000 75591000 44359000 61083000 5493000 6021700 3818400 15274000 15381000 7001 1349 5993 42311;42312;42313;42314;42315;42316;42317;42318 27007;27008;27009;27010;27011;27012;27013;27014;27015;27016;27017 27012 11 NLLDGLTSSQEELEK Unmodified 1674.8312 0.83120992 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 3 3 3 59.389 59.705 2 2.5342E-110 21450 20181213_JW_Orientia_Karp_3_1 387.8 294.36 5076700000 1539400000 1325800000 574960000 395460000 638590000 393780000 6684400 201990000 7002 1166 5994 42319;42320;42321;42322;42323;42324;42325;42326;42327;42328;42329;42330;42331;42332;42333;42334;42335;42336;42337;42338;42339 27018;27019;27020;27021;27022;27023;27024;27025;27026;27027;27028;27029;27030;27031;27032;27033;27034;27035;27036 27034 18 NLLEISGPETVPLPNVPSIALPSK Unmodified 2484.3839 0.38394098 1974 Q9H444 CHMP4B Charged multivesicular body protein 4b yes yes 0 0 0 0 By MS/MS 1 74.83 74.88 3 0.022996 27847 20181213_JW_Orientia_Karp_3_1 95.51 81.349 4158800 0 0 0 0 0 0 4158800 0 7003 1974 5995 42340 27037 27037 0 NLLHVTDTGVGMTR Oxidation (M) 1528.7668 0.76677595 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;Q96GW1 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 40.19 40.52 3 0.00050635 13708 20181213_JW_Orientia_Karp_1_1 143.05 108 240400000 93244000 60727000 39063000 9929600 5536700 0 30625000 1275900 7004 1598 5996 42341;42342;42343;42344;42345;42346;42347 27038;27039 27038 1224 2 NLLSVAYK Unmodified 906.51747 0.51746776 1728;824;1650;556;1651;1635;45 B4DE78;P61981;B3KNB4;B4DHC4;Q3YBA8;A2IDB2;V9HWD6;P31946-2;P31946;B5BU24;Q4VY20;Q4VY19;Q59EQ2;P31947-2;P31947;V9HW98;P62258;G9K389;G9K388;P62258-2;B4DJF2;I3L3T1;K7EIT4;D0PNI1;P63104;E7EX29;E7ESK7;E5RGE1;E5RIR4;E9PD24;E7EVZ2;Q6LD62;P27348;E9PG15;Q53RR5;A0A024R1K7;Q04917;B2R6N6 YWHAG;YWHAH;HEL-S-1;YWHAB;SFN;HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAZ;14-3-3 protein;YWHAQ 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein eta no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 47.064 47.357 2 0.0046798 17401 20181213_JW_Orientia_Karp_1_1 127.46 45.157 584720000 280240000 172470000 68670000 19729000 0 38043000 0 5563500 7005 556;1650;1651;1728;824;1635;45 5997 42348;42349;42350;42351;42352;42353 27040;27041;27042;27043 27040 4 NLNIDNPIVFHLGPDFK Unmodified 1952.0156 0.01559707 1261 Karp_01021 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.989 68.139 3 0.0002315 30695 20181213_JW_Orientia_Karp_1_1 125.33 79.717 72096000 21317000 0 30023000 0 10628000 8262900 1864700 0 7006 1261 5998 42354;42355;42356;42357;42358 27044;27045;27046;27047;27048 27044 5 NLPGLVQEGEPFSEEATLFTK Unmodified 2305.1478 0.14779303 451 B2R5U1;B4E299;B3KU67;Q59FF0;Q7KZF4;I6TRR8;H7C597 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 72.425 72.508 2 0.017293 32963 20181213_JW_Orientia_Karp_1_3 101.2 75.221 40058000 13851000 15440000 10767000 0 0 0 0 0 7007 451 5999 42359;42360;42361 27049 27049 1 NLPIAEICNLSTR Unmodified 1499.7766 0.77661235 1431 Karp_02388 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 60.163 60.456 2 0.0010021 25633 20181213_JW_Orientia_Karp_1_2 140.91 84.273 87075000 23947000 25943000 17636000 5226200 6769100 6372900 1180800 0 7008 1431 6000 42362;42363;42364;42365;42366;42367;42368 27050;27051;27052;27053 27051 4 NLPIYSEEIVEMYK Oxidation (M) 1742.8437 0.84368886 47 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 61.599 61.886 2 1.0074E-06 26638 20181213_JW_Orientia_Karp_1_2 179.67 139.76 172710000 67969000 41413000 39593000 0 9213800 6170400 3995100 4358000 7009 47 6001 42369;42370;42371;42372;42373;42374;42375 27054;27055;27056;27057 27055 48 4 NLPIYSEEIVEMYK Unmodified 1726.8488 0.84877424 47 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1 MYH9 Myosin-9 yes no 0 0 0 0 By matching By MS/MS 1 1 67.284 67.409 2 0.033304 29865 20181213_JW_Orientia_Karp_1_2 75.739 49.727 90318000 57746000 32572000 0 0 0 0 0 0 7010 47 6001 42376;42377 27058 27058 1 NLPLPPPPPPR Unmodified 1193.6921 0.69207809 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2;B4DFF1;Q5T6W1;B3KU16 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.525 51.87 2 0.0084493 19979 20181213_JW_Orientia_Karp_1_2 98.582 60.77 156270000 45198000 31548000 47128000 10077000 6711800 9045200 5926500 631840 7011 63 6002 42378;42379;42380;42381;42382;42383;42384;42385 27059 27059 1 NLPQNSNLNIHKK 4 Deamidation (NQ) 1522.7627 0.76273643 405 A8KAD2;Q5JVG2-2;Q5JVG2;Q5JVG2-3 ZNF484 Zinc finger protein 484 yes no 0 4 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 77.535 77.518 2 0.006114 36286 20181213_JW_Orientia_Karp_1_3 87.258 43.976 19706000 4807600 3411400 3972100 0 1563400 2450400 3501100 0 7012 405 6003 42386;42387;42388;42389;42390;42391 27060;27061;27062;27063;27064 27062 152;153;154;1427 5 NLQDAMQVCR Oxidation (M) 1249.5543 0.55434033 543 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368-2;P49368 CCT3 T-complex protein 1 subunit gamma yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 30.162 30.631 2 1.3879E-05 8207 20181213_JW_Orientia_Karp_1_3 162.88 97.631 11813000 0 3047500 3926900 806310 422750 0 1099300 2510500 7013 543 6004 42392;42393;42394;42395;42396;42397 27065;27066;27067 27066 341 3 NLQEAEEWYK Unmodified 1308.5986 0.59863121 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8;H7C5W5;B3KWQ6;P41219;P41219-2;F8W835 HEL113;VIM;PRPH Vimentin;Peripherin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 1 1 1 47.516 47.788 2 1.4104E-18 15939 20181213_JW_Orientia_Karp_2_2 240.13 154.27 7263300000 2125000000 2195500000 1593600000 306470000 252090000 335880000 24559000 430190000 7014 1571 6005 42398;42399;42400;42401;42402;42403;42404;42405;42406;42407;42408;42409;42410;42411 27068;27069;27070;27071;27072;27073;27074;27075;27076;27077;27078;27079;27080 27075 13 NLQEAEEWYK Deamidation (NQ) 1309.5826 0.5826468 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8;H7C5W5;B3KWQ6;P41219;P41219-2;F8W835 HEL113;VIM;PRPH Vimentin;Peripherin yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 1 57.611 57.912 2 7.2772E-12 25483 20181213_JW_Orientia_Karp_1_3 214.71 152.94 232590000 85287000 48138000 63544000 6092900 4056200 12481000 1238200 11751000 7015 1571 6005 42412;42413;42414;42415;42416;42417;42418;42419;42420;42421;42422;42423;42424;42425 27081;27082;27083;27084;27085;27086;27087;27088;27089 27084 1053;1922 9 NLQEQTVQLQSELSR Unmodified 1771.9064 0.90644055 1589 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 51.923 52.233 2 9.1876E-63 20274 20181213_JW_Orientia_Karp_1_2 283.05 191.58 28136000 5870500 7095100 8568200 2756600 3714400 0 0 131140 7016 1589 6006 42426;42427;42428;42429;42430;42431;42432 27090;27091;27092 27090 3 NLQEVLGEEK Unmodified 1157.5928 0.59281755 1706 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 44.403 44.731 2 0.01789 15575 20181213_JW_Orientia_Karp_1_2 85.355 32.639 20664000 0 11970000 6444400 0 0 1809300 0 441100 7017 1706 6007 42433;42434;42435;42436 27093 27093 1 NLQNLLILTAIK Unmodified 1352.8391 0.83913625 1757 Q00610-2;Q00610;P53675-2;P53675 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 72.195 72.316 2 0.0074154 33249 20181213_JW_Orientia_Karp_1_1 101.97 59.784 45670000 15570000 12473000 7678400 0 0 0 8570100 1377600 7018 1757 6008 42437;42438;42439;42440;42441 27094;27095 27094 2 NLQPASEYTVSLVAIK Unmodified 1731.9407 0.94070079 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 61.942 62.249 2 1.5961E-28 26458 20181213_JW_Orientia_Karp_1_3 239.38 191.26 446410000 151270000 113930000 98116000 9663100 39012000 22425000 2359700 9635900 7019 85 6009 42442;42443;42444;42445;42446;42447;42448;42449 27096;27097;27098;27099;27100;27101;27102;27103 27098 8 NLQYYDISAK Unmodified 1213.5979 0.59790293 705 B5MDF5;J3KQE5;P62826;F5H018;B4DV51 RAN GTP-binding nuclear protein Ran yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.793 46.065 2 0.00069672 16043 20181213_JW_Orientia_Karp_1_3 130.41 86.296 141700000 44597000 33445000 33208000 10083000 5667900 3519500 0 11176000 7020 705 6010 42450;42451;42452;42453;42454;42455;42456 27104;27105;27106;27107;27108;27109 27106 6 NLSADTFNSTYQDK Unmodified 1602.7162 0.71618016 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 43.996 44.274 2 3.3719E-25 15644 20181213_JW_Orientia_Karp_1_1 231.74 166.59 31245000 12882000 15608000 0 0 0 1648600 0 1106600 7021 1262 6011 42457;42458;42459;42460 27110;27111 27110 2 NLSFDHQK Unmodified 987.47739 0.47739386 1110 Karp_00292 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 24.104 24.525 2 0.017411 6015 20181213_JW_Orientia_Karp_1_1 91.853 27.096 3979400 1714500 0 0 0 0 0 1493000 771830 7022 1110 6012 42461;42462;42463;42464 27112;27113 27112 2 NLSQILSDR Unmodified 1044.5564 0.55637247 160 B4E2V5;B4DZK8;A0A024R882;P27105 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.289 47.634 2 0.00038728 16966 20181213_JW_Orientia_Karp_1_3 160.75 67.156 105810000 19449000 33887000 12052000 12525000 5786900 15546000 117170 6442700 7023 160 6013 42465;42466;42467;42468;42469;42470;42471;42472 27114;27115;27116;27117;27118;27119;27120;27121 27117 8 NLSQILSDREEIAHNMQSTLDDATDAWGIK Oxidation (M) 3386.6049 0.60486216 160 B4E2V5;B4DZK8;A0A024R882;P27105 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 1 1 By MS/MS By matching 1 1 60.845 61.119 4 0.015232 26088 20181213_JW_Orientia_Karp_1_2 50.556 27.333 15699000 0 10711000 4987700 0 0 0 0 0 7024 160 6014 42473;42474 27122 27122 132 1 NLTPENLTAFEQAVAADIDK Unmodified 2159.0746 0.074628091 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 73.594 73.623 2;3 5.5168E-23 27344 20181213_JW_Orientia_Karp_3_1 209.23 129.43 338260000 113780000 87992000 72374000 858900 11441000 0 51816000 0 7025 1428 6015 42475;42476;42477;42478;42479;42480;42481;42482;42483;42484 27123;27124;27125;27126;27127;27128;27129;27130 27130 8 NLTSGSQLSGHIAFK Unmodified 1558.8104 0.81035532 1382 Karp_02121 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 2 1 42.729 43.042 2;3 0.0058875 13309 20181213_JW_Orientia_Karp_3_2 93.766 43.732 126930000 45317000 27395000 25770000 4971900 4104600 924240 18012000 439220 7026 1382 6016 42485;42486;42487;42488;42489;42490;42491;42492;42493;42494;42495;42496 27131;27132 27132 2 NLTTILNEYVAMKTK Oxidation (M);2 Deamidation (NQ) 1755.8965 0.89645272 750 B9EG70;Q14207 NPAT Protein NPAT yes no 0 2 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 74.113 74.134 2 0.015083 34072 20181213_JW_Orientia_Karp_1_3 84.188 27.829 134790000 50320000 26939000 41715000 3121100 2594300 1180600 8917500 0 7027 750 6017 42497;42498;42499;42500;42501;42502;42503 27133;27134;27135 27135 245;246 441 3 NLVHPVEQK Unmodified 1062.5822 0.58219329 1438 Karp_02403 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 23.383 23.777 2 0.0016706 4137 20181213_JW_Orientia_Karp_3_2 122.19 64.724 11322000 0 3083700 1802200 1244200 1690100 761500 1267700 1472600 7028 1438 6018 42504;42505;42506;42507;42508;42509;42510 27136;27137;27138 27138 3 NLYHSEAFSINFR Unmodified 1596.7685 0.76849051 803 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.809 52.11 3 0.0036631 20072 20181213_JW_Orientia_Karp_1_3 99.161 65.268 322150000 39717000 24139000 68946000 97203000 48118000 43734000 0 289310 + 7029 803 6019 42511;42512;42513;42514;42515;42516;42517 27139;27140;27141;27142;27143 27141 4 NLYHSEAFSINFR Deamidation (NQ) 1597.7525 0.75250609 803 CON__P34955 yes yes 0 1 0 0 By MS/MS By matching By matching 1 1 1 54.017 54.367 3 0.030119 19851 20181213_JW_Orientia_Karp_2_1 73.927 40.654 24046000 0 0 0 6095500 6683700 11267000 0 0 + 7030 803 6019 42518;42519;42520 27144 27144 293 0 NLYINNELQDFTKTQMK 5 Deamidation (NQ) 2103.9558 0.95581809 309 Q5T0V0;A6H8V1;O75093 SLIT1 Slit homolog 1 protein yes no 0 5 0 1 By MS/MS By MS/MS 1 1 59.918 60.192 2 0.0067766 25429 20181213_JW_Orientia_Karp_1_2 94.538 30.594 40062000 0 16873000 23189000 0 0 0 0 0 7031 309 6020 42521;42522 27145;27146;27147;27148 27146 118;119;120;1368;1369 4 NLYINNELQDFTKTQMK 4 Deamidation (NQ) 2102.9718 0.9718025 309 Q5T0V0;A6H8V1;O75093 SLIT1 Slit homolog 1 protein yes no 0 4 0 1 By MS/MS 1 59.865 60.375 2 0.020611 22034 20181213_JW_Orientia_Karp_3_2 72.29 21.277 0 0 0 0 0 0 0 0 0 7032 309 6020 42523 27149 27149 118;119;120;1368;1369 1 NMACVQR Oxidation (M) 893.38476 0.38475581 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 1 0 By MS/MS 1 13.948 14.399 2 0.039097 2457 20181213_JW_Orientia_Karp_3_1 79.454 10.539 403230 0 0 0 0 0 0 403230 0 7033 1662 6021 42524 27150 27150 1 NMDPLNDNIATLLHQSSDK Oxidation (M) 2141.0059 0.005896599 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 58.365 58.652 3 0.0014801 24179 20181213_JW_Orientia_Karp_1_3 103.71 84.315 311430000 101220000 73508000 83682000 8738400 17155000 12926000 0 14195000 7034 47 6022 42525;42526;42527;42528;42529;42530;42531 27151;27152;27153;27154 27153 49 4 NMDPLNDNIATLLHQSSDK Unmodified 2125.011 0.010981977 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 62.487 62.749 3 0.00014647 27323 20181213_JW_Orientia_Karp_1_1 119.04 56.575 142110000 41060000 38638000 53005000 0 6482800 0 0 2922900 7035 47 6022 42532;42533;42534;42535;42536 27155;27156 27155 2 NMGGKPTLLIVMDINK Oxidation (M) 1758.9372 0.93721209 1347 Karp_01523 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 56.292 56.634 3 0.0014232 21251 20181213_JW_Orientia_Karp_2_1 130.66 62.624 93862000 21720000 30911000 31664000 9448700 0 0 0 117620 7036 1347 6023 42537;42538;42539;42540;42541 27157;27158;27159;27160 27160 917;918 4 NMGGKPTLLIVMDINK Unmodified 1742.9423 0.94229747 1347 Karp_01523 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 58.929 59.159 3 0.0012661 25355 20181213_JW_Orientia_Karp_1_1 125.33 64.096 19801000 3585900 0 8291300 1660100 3359900 2903700 0 0 7037 1347 6023 42542;42543;42544;42545;42546 27161;27162 27161 2 NMGGKPTLLIVMDINK 2 Oxidation (M) 1774.9321 0.93212672 1347 Karp_01523 yes yes 0 0 2 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 48.766 49.068 3 0.00050077 17155 20181213_JW_Orientia_Karp_2_3 132.65 82.623 82412000 9919300 15391000 10218000 15883000 7299500 9898800 0 13802000 7038 1347 6023 42547;42548;42549;42550;42551;42552;42553 27163;27164;27165;27166 27165 917;918 4 NMGGPYGGGNYGPGGSGGSGGYGGR Oxidation (M) 2204.893 0.89299211 191 A0A024RA27;A0A024RA61;P22626-2;P22626;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 1 2 37.243 37.57 2;3 1.4338E-84 11555 20181213_JW_Orientia_Karp_1_2 284.46 237.04 409910000 100580000 81477000 103340000 37516000 32053000 860000 54071000 0 7039 191 6024 42554;42555;42556;42557;42558;42559;42560;42561;42562;42563;42564;42565;42566 27167;27168;27169;27170;27171;27172 27168 145 6 NMGGPYGGGNYGPGGSGGSGGYGGR Unmodified 2188.8981 0.89807748 191 A0A024RA27;A0A024RA61;P22626-2;P22626;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 2 41.238 41.567 2;3 7.4432E-84 13200 20181213_JW_Orientia_Karp_3_1 276.62 242.65 208730000 56381000 60889000 51373000 9799700 5826400 5397500 19064000 0 7040 191 6024 42567;42568;42569;42570;42571;42572;42573;42574;42575;42576;42577;42578 27173;27174;27175;27176;27177;27178;27179;27180 27180 8 NMGGPYGGGNYGPGGSGGSGGYGGR Oxidation (M);Deamidation (NQ) 2205.877 0.87700769 191 A0A024RA27;A0A024RA61;P22626-2;P22626;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 1 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 44.252 44.502 2 6.4582E-08 15231 20181213_JW_Orientia_Karp_1_3 143.99 113.93 19569000 4119400 4713500 7041700 1587100 0 2107600 0 0 7041 191 6024 42579;42580;42581;42582;42583;42584;42585 27181;27182;27183;27184 27183 76;77 145 4 NMGGPYGGGNYGPGGSGGSGGYGGR Deamidation (NQ) 2189.8821 0.88209307 191 A0A024RA27;A0A024RA61;P22626-2;P22626;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 1 0 0 By MS/MS 1 44.588 44.786 2 0.030993 15376 20181213_JW_Orientia_Karp_1_3 80.361 65.33 0 0 0 0 0 0 0 0 0 7042 191 6024 42586 27185 27185 76;77 1 NMITGASQTDGLILVVSGVDGVMPQTR 2 Oxidation (M) 2790.3892 0.38917907 1176;1244 Karp_00632;Karp_00911 no no 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 1 2 71.868 71.968 2;3 1.8056E-14 32597 20181213_JW_Orientia_Karp_1_3 161.48 136.07 537570000 145420000 139650000 87048000 42096000 0 5727100 117630000 0 7043 1176;1244 6025 42587;42588;42589;42590;42591;42592;42593;42594;42595 27186;27187;27188;27189;27190;27191 27189 742;743 6 NMITGASQTDGLILVVSGVDGVMPQTR Unmodified 2758.3993 0.39934982 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 74.604 74.636 3 9.4186E-08 30361 20181213_JW_Orientia_Karp_2_3 119.37 97.379 326500000 15234000 118120000 115910000 3220900 15239000 14330000 24259000 20198000 7044 1176;1244 6025 42596;42597;42598;42599;42600;42601;42602;42603 27192;27193 27193 2 NMITGASQTDGLILVVSGVDGVMPQTR 2 Oxidation (M);Deamidation (NQ) 2791.3732 0.37319465 1176;1244 Karp_00632;Karp_00911 no no 0 1 2 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 75.714 75.714 3 0.0005481 35145 20181213_JW_Orientia_Karp_1_3 86.248 63.873 48466000 18424000 0 12681000 2813400 5475400 2558400 6514800 0 7045 1176;1244 6025 42604;42605;42606;42607;42608;42609 27194;27195 27195 582;1818 742;743 2 NMITGASQTDGLILVVSGVDGVMPQTR Oxidation (M) 2774.3943 0.39426445 1176;1244 Karp_00632;Karp_00911 no no 0 0 1 0 By matching By MS/MS By MS/MS By matching 1 2 2 1 73.376 73.433 2 2.5927E-25 33477 20181213_JW_Orientia_Karp_1_3 190.37 148.79 156760000 34290000 69702000 41030000 0 0 0 11742000 0 7046 1176;1244 6025 42610;42611;42612;42613;42614;42615 27196;27197;27198 27197 742;743 3 NMITGASQTDGLILVVSGVDGVMPQTR Deamidation (NQ) 2759.3834 0.38336541 1176;1244 Karp_00632;Karp_00911 no no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 78.104 78.093 3 0.00054869 36709 20181213_JW_Orientia_Karp_1_3 94.72 70.322 34435000 13129000 9584100 7386000 859770 0 0 3476900 0 7047 1176;1244 6025 42616;42617;42618;42619;42620 27199;27200 27200 582;1818 2 NMITGASQTDGLILVVSGVDGVMPQTR Oxidation (M);Deamidation (NQ) 2775.3783 0.37828003 1176;1244 Karp_00632;Karp_00911 no no 0 1 1 0 By MS/MS By matching By MS/MS 1 1 1 76.991 76.99 3 0.00037398 35927 20181213_JW_Orientia_Karp_1_3 89.71 67.453 19118000 0 0 12589000 2487900 4041400 0 0 0 7048 1176;1244 6025 42621;42622;42623 27201;27202 27201 582;1818 742;743 2 NMLLLQYLNK Unmodified 1248.69 0.69002918 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 65.641 65.854 2 1.4754E-44 28938 20181213_JW_Orientia_Karp_1_2 273.38 189.38 46943000 21916000 13364000 0 0 0 6338800 5324400 0 7049 1252 6026 42624;42625;42626;42627;42628;42629 27203;27204;27205;27206 27204 4 NMMAACDPR 2 Oxidation (M) 1096.41 0.40998428 1566;1747;1550;1964;1823 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;A4UCT2;Q3ZCM7;A0A075B736;Q5SQY0;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB8;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 18.164 18.571 2 0.00067642 3443 20181213_JW_Orientia_Karp_1_3 131.22 110.28 46119000 8388600 9057600 5523300 1427300 200380 6788500 3102600 11631000 7050 1550;1566;1747;1823;1964 6027 42630;42631;42632;42633;42634;42635;42636;42637;42638 27207;27208;27209;27210;27211;27212;27213;27214;27215 27209 1158;1159 9 NMMAACDPR Oxidation (M) 1080.4151 0.41506966 1566;1747;1550;1964;1823 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;A4UCT2;Q3ZCM7;A0A075B736;Q5SQY0;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB8;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.334 24.666 2 0.00066318 5946 20181213_JW_Orientia_Karp_1_1 141.52 113.41 27023000 2033900 15074000 4001100 750750 560490 583990 2829000 1189800 7051 1550;1566;1747;1823;1964 6027 42639;42640;42641;42642;42643;42644;42645;42646 27216;27217;27218;27219;27220;27221;27222 27216 1158;1159 7 NMNINASYYIATDK Oxidation (M) 1632.7454 0.7453718 1167 Karp_00621 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.298 46.625 2 5.059E-06 16942 20181213_JW_Orientia_Karp_1_1 177.81 115.65 65281000 15941000 15756000 15128000 0 0 11147000 2916100 4393200 7052 1167 6028 42647;42648;42649;42650;42651;42652;42653;42654 27223;27224;27225;27226;27227;27228;27229;27230 27223 701 8 NMNINASYYIATDK Unmodified 1616.7505 0.75045718 1167 Karp_00621 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 52.405 52.8 2 0.0003241 20521 20181213_JW_Orientia_Karp_1_3 150.14 112.43 34878000 0 14325000 8496400 2912800 3448300 2435500 2745900 513420 7053 1167 6028 42655;42656;42657;42658;42659;42660;42661 27231;27232;27233;27234 27232 4 NMQDLVEDFK Unmodified 1237.5649 0.56488824 799 CON__P13647;P13647;F8W0C6 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.407 58.667 2 6.7317E-08 22142 20181213_JW_Orientia_Karp_2_2 194.94 24.436 89924000 34871000 17649000 17150000 0 7283900 9647600 0 3322300 + 7054 799 6029 42662;42663;42664;42665;42666;42667 27235;27236;27237;27238;27239;27240 27238 6 NMQDLVEDFK Oxidation (M) 1253.5598 0.55980286 799 CON__P13647;P13647;F8W0C6 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.45 47.796 2 4.0539E-12 16111 20181213_JW_Orientia_Karp_2_2 212.21 26.396 392140000 316760000 16455000 12352000 13783000 10645000 10434000 1040400 10671000 + 7055 799 6029 42668;42669;42670;42671;42672;42673;42674;42675 27241;27242;27243;27244;27245;27246;27247;27248;27249 27244 465 9 NMQDMVEDYR 2 Oxidation (M) 1331.5122 0.51220074 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 1 3 2 29.769 30.177 2 4.3902E-08 8383 20181213_JW_Orientia_Karp_1_1 194.94 155.97 924250000 121410000 165050000 187990000 126940000 121980000 776190 117150000 82953000 + 7056 995;996 6030 42676;42677;42678;42679;42680;42681;42682;42683;42684;42685;42686;42687;42688;42689;42690;42691 27250;27251;27252;27253;27254;27255;27256;27257 27250 550;551 8 NMQDMVEDYR Unmodified 1299.5224 0.5223715 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.736 47.056 2 5.0276E-12 16578 20181213_JW_Orientia_Karp_1_3 211.78 164.2 373910000 125890000 83458000 66299000 27291000 18315000 28416000 1685300 22556000 + 7057 995;996 6030 42692;42693;42694;42695;42696;42697;42698;42699 27258;27259;27260;27261;27262;27263;27264;27265;27266 27260 9 NMQDMVEDYR Oxidation (M) 1315.5173 0.51728612 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 1 0 By MS/MS By matching By matching 1 1 1 38.825 39.142 2 0.0088246 11826 20181213_JW_Orientia_Karp_2_1 92.239 66.431 81060000 0 0 0 67389000 3537400 10133000 0 0 + 7058 995;996 6030 42700;42701;42702 27267 27267 550;551 1 NMWGMNLVTPQTGPK 2 Oxidation (M) 1704.7964 0.79636152 1121 Karp_00319 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.32 48.665 2 2.2889E-19 16710 20181213_JW_Orientia_Karp_2_1 211.38 151.28 119540000 22557000 30775000 17921000 12118000 13974000 10949000 958320 10291000 7059 1121 6031 42703;42704;42705;42706;42707;42708;42709;42710 27268;27269;27270;27271;27272;27273;27274;27275;27276 27271 649;650 9 NMWGMNLVTPQTGPK Oxidation (M) 1688.8014 0.80144689 1121 Karp_00319 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 55.284 55.678 2 0.0005928 21764 20181213_JW_Orientia_Karp_1_1 136.99 103.99 73483000 14305000 14337000 26382000 16687000 0 0 1606900 164980 7060 1121 6031 42711;42712;42713;42714;42715;42716;42717 27277;27278;27279;27280 27277 649;650 4 NNAIIGAAISYAK Unmodified 1304.7089 0.70885036 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.154 53.455 2 2.9441E-05 21161 20181213_JW_Orientia_Karp_1_2 174.77 120.35 103430000 17768000 22981000 29108000 10737000 9445300 12420000 0 973280 7061 1193 6032 42718;42719;42720;42721;42722;42723;42724 27281;27282;27283 27282 3 NNALNMNKR Oxidation (M);2 Deamidation (NQ) 1091.503 0.50295669 1614 P20929-4;P20929;P20929-3;P20929-2 NEB Nebulin yes no 0 2 1 1 By MS/MS 1 43.674 43.825 2 0.015742 13980 20181213_JW_Orientia_Karp_2_2 81.297 12.51 0 0 0 0 0 0 0 0 0 7062 1614 6033 42725 27284 27284 1071;1072;1073 1236 1 NNEDISIIPPLFTVSVDHR Unmodified 2165.1117 0.1116823 324 A6NLM8;P51571 SSR4 Translocon-associated protein subunit delta yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 72.756 72.823 3 0.013887 33544 20181213_JW_Orientia_Karp_1_1 66.777 39.347 33280000 14129000 7867700 0 0 0 0 11283000 0 7063 324 6034 42726;42727;42728 27285 27285 1 NNEVIFSGPLQTLK Unmodified 1558.8355 0.83550744 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 62.404 62.68 2 7.1877E-06 27057 20181213_JW_Orientia_Karp_1_2 184.96 111.9 32573000 7297200 8091300 11390000 653270 0 2293700 0 2848100 7064 1366 6035 42729;42730;42731;42732;42733;42734 27286;27287;27288 27287 3 NNEVWLIQK Unmodified 1142.6084 0.60840804 1771 Q05DB4;Q9Y5Z4;Q9Y5Z4-2 HEBP2 Heme-binding protein 2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 50.631 50.991 2 0.00080231 18056 20181213_JW_Orientia_Karp_2_1 139.97 60.519 13796000 0 0 3044400 3785200 2118600 3885700 961820 0 7065 1771 6036 42735;42736;42737;42738;42739 27289 27289 1 NNFAVGYR Unmodified 939.45626 0.45626449 21 A0A024QZT0;A0A024QZN9;P45880-2;P45880;P45880-1;B4DKM5;Q5JSD2;Q5JSD1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 37.141 37.425 2 0.020869 11488 20181213_JW_Orientia_Karp_1_3 87.754 43.638 45907000 18678000 11121000 9655600 0 1403200 2529700 2519900 0 7066 21 6037 42740;42741;42742;42743;42744;42745 27290 27290 1 NNIALETYLTPFK Unmodified 1522.8031 0.80314468 1062 Karp_00006 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 67.34 67.544 2 0.00087173 30366 20181213_JW_Orientia_Karp_1_1 143 86.08 19462000 0 0 0 0 8650000 4243100 0 6568400 7067 1062 6038 42746;42747;42748;42749;42750 27291;27292;27293;27294;27295 27291 5 NNIALETYLTPFK Deamidation (NQ) 1523.7872 0.78716026 1062 Karp_00006 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 1 75.003 75.002 2 0.00034858 33525 20181213_JW_Orientia_Karp_1_3 180.66 118.36 64857000 23965000 6895400 18133000 0 4639000 4379100 6844800 0 7068 1062 6038 42751;42752;42753;42754;42755;42756;42757 27296;27297;27298;27299 27297 396;397 4 NNIIQTWR Unmodified 1043.5512 0.55122751 1667 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1 45.673 45.973 2 0.018119 15940 20181213_JW_Orientia_Karp_1_2 90.709 39.363 36351000 13748000 12598000 7977300 853860 1048500 0 125210 0 7069 1667 6039 42758;42759;42760;42761;42762;42763;42764 27300;27301 27301 2 NNITTIMNELQQAIK Deamidation (NQ) 1730.8873 0.88728501 1074 Karp_00050 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 1 3 1 4 1 70.115 70.227 2;3 6.9915E-131 31164 20181213_JW_Orientia_Karp_2_1 345.57 226.04 222560000 63119000 29709000 29860000 0 27854000 5508100 63559000 2952100 7070 1074 6040 42765;42766;42767;42768;42769;42770;42771;42772;42773;42774;42775;42776;42777;42778;42779;42780;42781;42782 27302;27303;27304;27305;27306;27307;27308;27309;27310;27311 27307 417;418;419;1789 9 NNITTIMNELQQAIK Oxidation (M) 1745.8982 0.89818405 1074 Karp_00050 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 3 3 2 3 62.081 62.359 2;3 8.4742E-79 23864 20181213_JW_Orientia_Karp_2_2 301.35 212.08 665880000 158570000 132630000 74934000 8982500 159650000 84911000 9926300 36283000 7071 1074 6040 42783;42784;42785;42786;42787;42788;42789;42790;42791;42792;42793;42794;42795;42796;42797;42798;42799;42800;42801;42802;42803;42804 27312;27313;27314;27315;27316;27317;27318;27319;27320;27321 27317 594 9 NNITTIMNELQQAIK Oxidation (M);Deamidation (NQ) 1746.8822 0.88219964 1074 Karp_00050 yes yes 0 1 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 2 3 3 64.453 64.659 2 2.546E-28 19236 20181213_JW_Orientia_Karp_2_1 240.18 170.53 282730000 74562000 53081000 42055000 23833000 21268000 15073000 39925000 12933000 7072 1074 6040 42805;42806;42807;42808;42809;42810;42811;42812;42813;42814;42815;42816;42817;42818;42819;42820;42821;42822;42823;42824;42825 27322;27323;27324;27325;27326;27327;27328;27329;27330;27331;27332;27333;27334;27335;27336;27337 27324 417;418;419;1789 594 16 NNITTIMNELQQAIK Unmodified 1729.9033 0.90326943 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 73.246 73.299 2;3 3.4479E-134 27098 20181213_JW_Orientia_Karp_3_1 336.33 256.09 1897300000 484920000 369110000 190310000 547950 221670000 118960000 414890000 96864000 7073 1074 6040 42826;42827;42828;42829;42830;42831;42832;42833;42834;42835;42836;42837;42838;42839 27338;27339;27340;27341;27342;27343;27344;27345;27346 27343 9 NNLAFEIDGVVYK Unmodified 1480.7562 0.75619449 1202 Karp_00823 yes yes 0 0 0 0 By MS/MS 1 63.203 63.203 2 0.019228 27647 20181213_JW_Orientia_Karp_1_1 86.772 40.166 5089400 5089400 0 0 0 0 0 0 0 7074 1202 6041 42840 27347 27347 1 NNLAGAEELFAR Unmodified 1303.6521 0.65206377 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 54.44 54.64 2 2.8208E-05 21602 20181213_JW_Orientia_Karp_1_3 178.46 111.77 154270000 88014000 30178000 31179000 0 0 4898200 0 0 7075 1757 6042 42841;42842;42843;42844 27348;27349;27350 27350 3 NNLEIIR Unmodified 870.49232 0.49231565 1254 Karp_00934 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 40.812 41.224 2 0.014268 13432 20181213_JW_Orientia_Karp_1_3 113.41 3.1019 91541000 0 40108000 41268000 2939900 0 0 7225700 0 7076 1254 6043 42845;42846;42847;42848 27351;27352 27352 2 NNLLEDSK Unmodified 931.46108 0.4610751 1316 Karp_01272 yes yes 0 0 0 0 By matching By MS/MS 1 1 31.477 31.803 2 0.033456 8397 20181213_JW_Orientia_Karp_3_1 80.688 36.294 13260000 8686600 0 0 0 0 0 4573100 0 7077 1316 6044 42849;42850 27353 27353 1 NNNAGNMLTFGGGTRLMVK Acetyl (Protein N-term);Deamidation (NQ) 2036.9772 0.97717943 275 A0N4X3 Tcr-alpha yes yes 1 1 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 3 2 2 3 1 1 3 2 28.671 29.049 3 0.02895 7267 20181213_JW_Orientia_Karp_1_1 49.606 17.93 773560000 151270000 113430000 7121600 13773000 305060000 96706000 83533000 2670800 7078 275 6045 42851;42852;42853;42854;42855;42856;42857;42858;42859;42860;42861;42862;42863;42864;42865;42866;42867 27354;27355;27356;27357;27358 27354 105;106 5 NNNAGNMLTFGGGTRLMVK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 2053.9561 0.95610963 275 A0N4X3 Tcr-alpha yes yes 1 2 1 1 By MS/MS 1 39.172 39.823 3 0.036989 12297 20181213_JW_Orientia_Karp_3_1 42.78 9.156 0 0 0 0 0 0 0 0 0 7079 275 6045 42868 27359 27359 105;106 1 NNPSTNYTTLPDEIMNQK Oxidation (M) 2094.9528 0.9527984 1690 Q53X91;P49888;H0Y8G0 SULT1E1 Sulfotransferase;Estrogen sulfotransferase yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 49.002 49.292 2 3.7483E-06 18165 20181213_JW_Orientia_Karp_1_3 149.35 116.73 20569000 5413600 5893800 7700800 0 0 0 0 1560700 7080 1690 6046 42869;42870;42871;42872 27360;27361;27362;27363 27363 1304 4 NNPSTNYTTLPDEIMNQK Unmodified 2078.9579 0.95788377 1690 Q53X91;P49888;H0Y8G0 SULT1E1 Sulfotransferase;Estrogen sulfotransferase yes no 0 0 0 0 By MS/MS By MS/MS 1 1 56.463 56.813 2 0.00064045 22890 20181213_JW_Orientia_Karp_1_3 193.11 143.66 9567900 0 9567900 0 0 0 0 0 0 7081 1690 6046 42873;42874 27364;27365 27365 2 NNQEHFMR Oxidation (M) 1090.4614 0.46142622 1262 Karp_01022 yes yes 0 0 1 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 15.151 15.4 2 0.029279 2441 20181213_JW_Orientia_Karp_1_3 79.713 41.437 1281200 320040 0 521800 176850 0 0 262470 0 7082 1262 6047 42875;42876;42877;42878 27366;27367 27366 2 NNQITNNQR Unmodified 1100.5323 0.53228298 1539 V9HWF4;P00558-2;P00558;B4DHB3 HEL-S-68p;PGK1 Phosphoglycerate kinase;Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By matching 1 1 16.553 16.677 2 0.032171 2966 20181213_JW_Orientia_Karp_1_1 76.679 21.129 1166500 1087800 0 0 78739 0 0 0 0 7083 1539 6048 42879;42880 27368 27368 1 NNRNQSIIVSGESGAGK 4 Deamidation (NQ) 1733.8068 0.80678609 646 H0YM93;B4DVH2;H0YMK3;B4E268;Q9NQX4-2;Q9NQX4 MYO5C Unconventional myosin-Vc yes no 0 4 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 55.791 56.15 2 0.023506 20733 20181213_JW_Orientia_Karp_2_1 75.819 11.09 63931000 17782000 0 9553300 20185000 6987400 4840400 4092600 490120 7084 646 6049 42881;42882;42883;42884;42885;42886;42887 27369 27369 224;225;226;1555 1 NNRPSEGPLQTR Unmodified 1367.6906 0.69057454 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS 1 23.211 23.46 3 0.00053837 5122 20181213_JW_Orientia_Karp_1_2 149.41 98.951 5279600 0 5279600 0 0 0 0 0 0 7085 1757 6050 42888 27370 27370 1 NNSAYWK Unmodified 881.40317 0.40316629 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By matching 1 1 28.144 28.445 2 0.016863 7219 20181213_JW_Orientia_Karp_1_2 108.09 49.306 6738800 0 5650100 0 0 0 1088600 0 0 7086 1395 6051 42889;42890 27371 27371 1 NNVILQPLQPDTPYK Unmodified 1738.9254 0.92538508 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 57.615 57.798 2 0.023336 24420 20181213_JW_Orientia_Karp_1_1 82.362 39.619 25152000 9094400 6435800 9622100 0 0 0 0 0 7087 852 6052 42891;42892;42893 27372 27372 1 NNVPALK Deamidation (NQ) 755.41775 0.41775372 1375 Karp_02111 yes yes 0 1 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 37.644 37.894 2 0.007928 12318 20181213_JW_Orientia_Karp_2_1 123.99 44.05 228800000 132080000 46666000 18984000 16795000 14280000 0 0 0 7088 1375 6053 42894;42895;42896;42897;42898;42899;42900;42901;42902;42903 27373;27374;27375 27374 868;869 2 NNVPALK Unmodified 754.43374 0.43373813 1375 Karp_02111 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 29.138 29.459 2 0.012177 7145 20181213_JW_Orientia_Karp_2_3 126.68 44.413 234940000 77977000 66629000 32736000 6856500 17153000 15462000 18126000 0 7089 1375 6053 42904;42905;42906;42907;42908;42909;42910 27376;27377;27378 27377 3 NNVPALKEDEYPFYQK Unmodified 1953.9472 0.94724273 1375 Karp_02111 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 48.571 48.898 3 0.013616 15932 20181213_JW_Orientia_Karp_3_2 91.076 46.824 154420000 15830000 31360000 19551000 34157000 0 15139000 0 38388000 7090 1375 6054 42911;42912;42913;42914;42915;42916 27379 27379 1 NNYSDFLLK Unmodified 1112.5502 0.55022446 1236 Karp_00903 yes yes 0 0 0 0 By MS/MS 1 54.877 55.075 2 0.018281 21889 20181213_JW_Orientia_Karp_1_3 104.06 34.859 0 0 0 0 0 0 0 0 0 7091 1236 6055 42917 27380 27380 1 NPADLPK Unmodified 753.4021 0.40210366 1593 P13639;Q8TA90;Q6PK56 EEF2 Elongation factor 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 28.112 28.312 2 0.032154 7581 20181213_JW_Orientia_Karp_1_1 87.754 35.455 16142000 6974200 5309300 2980200 0 0 877940 0 0 7092 1593 6056 42918;42919;42920;42921 27381 27381 1 NPAMMQEMMR 3 Oxidation (M) 1285.4923 0.4923337 65;598 A0A024R258;B3KNI8;B3KNI2;A0A024R284;Q9UMX0-2;Q9UMX0;Q59FJ2;H0YDS0;D3DVA8;B4DZF6;Q59F94;Q9NRR5;Q9H8R7;B4DM19;B4DZF1;Q9UHD9 UBQLN1;UBQLN4;UBQLN2 Ubiquilin-1;Ubiquilin-4;Ubiquilin-2 no no 0 0 3 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 22.759 23.009 2 0.0032025 4912 20181213_JW_Orientia_Karp_1_2 108.57 88.429 6884900 0 6015800 0 485140 0 383910 0 0 7093 65;598 6057 42922;42923;42924;42925;42926 27382;27383;27384;27385 27383 69;70;71;72 4 NPAMMQEMMR 4 Oxidation (M) 1301.4872 0.48724832 65;598 A0A024R258;B3KNI8;B3KNI2;A0A024R284;Q9UMX0-2;Q9UMX0;Q59FJ2;H0YDS0;D3DVA8;B4DZF6;Q59F94;Q9NRR5;Q9H8R7;B4DM19;B4DZF1;Q9UHD9 UBQLN1;UBQLN4;UBQLN2 Ubiquilin-1;Ubiquilin-4;Ubiquilin-2 no no 0 0 4 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 1 17.976 18.361 2 0.0045997 3011 20181213_JW_Orientia_Karp_3_2 89.029 76.822 1665300 0 0 563620 327530 0 393400 230120 150630 7094 65;598 6057 42927;42928;42929;42930;42931;42932;42933 27386;27387;27388;27389 27389 69;70;71;72 4 NPCQDPYILTPENR Unmodified 1715.7937 0.79371898 407 B4DWH0;Q53TA7;B3KS53;Q59G97;B2R6M6;A8KAJ3;Q12805-5;Q12805-2;Q12805-4;Q12805-3;Q12805 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 48.847 49.209 2 0.0028369 18067 20181213_JW_Orientia_Karp_1_3 118.61 65.914 26998000 7180300 9344000 7447000 0 0 0 153760 2873200 7095 407 6058 42934;42935;42936;42937;42938 27390;27391 27390 2 NPDDITNEEYGEFYK Unmodified 1832.7741 0.77408897 1057 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q86U12 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.619 53.903 2 4.6741E-156 21648 20181213_JW_Orientia_Karp_1_1 350.9 285.62 290920000 78836000 94798000 88632000 0 9481600 9765300 9412000 0 7096 1057 6059 42939;42940;42941;42942;42943;42944 27392;27393;27394;27395;27396;27397 27392 6 NPDDITQEEYGEFYK Unmodified 1846.7897 0.78973904 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50 HSP90AB1 Heat shock protein HSP 90-beta yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 54.232 54.59 2 1.4243E-27 21499 20181213_JW_Orientia_Karp_1_3 234.04 188.15 855330000 333450000 293190000 158570000 22948000 19667000 20743000 252650 6509100 7097 251 6060 42945;42946;42947;42948;42949;42950;42951;42952 27398;27399;27400;27401;27402 27399 5 NPDEEDNTFYQR Unmodified 1526.6274 0.62736516 1962 Q9BS40;H7C5A4 LXN Latexin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 38.013 38.287 2 1.1691E-16 12414 20181213_JW_Orientia_Karp_1_1 218.55 181.49 19329000 5453100 4380000 7180200 2315400 0 0 0 0 7098 1962 6061 42953;42954;42955;42956 27403;27404 27403 2 NPEFTSGLAIASYR Unmodified 1524.7573 0.75725712 639 Q05DN2;B4DTZ5;Q8IZ03;P09913 IFIT2 Interferon-induced protein with tetratricopeptide repeats 2 yes no 0 0 0 0 By MS/MS By matching 1 1 57.221 57.625 2 0.0028066 23510 20181213_JW_Orientia_Karp_1_3 118.73 82.413 11267000 0 0 9669300 0 0 0 0 1597300 7099 639 6062 42957;42958 27405 27405 1 NPEISHMLNNPDIMR 2 Oxidation (M) 1811.8295 0.82945256 65 A0A024R258;B3KNI8;B3KNI2;A0A024R284;Q9UMX0-2;Q9UMX0;Q59FJ2 UBQLN1 Ubiquilin-1 yes no 0 0 2 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 37.401 37.819 3 0.0047406 11748 20181213_JW_Orientia_Karp_1_2 98.654 53.538 31787000 0 9172100 7856900 2192300 0 1678300 9802500 1084800 7100 65 6063 42959;42960;42961;42962;42963;42964 27406 27406 73;74 1 NPEQEPIPIVLR Unmodified 1403.7773 0.77726428 626 O15376;H0YE29;B4DPZ4;Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 58.951 59.216 2 0.0016355 25238 20181213_JW_Orientia_Karp_1_1 126.19 58.86 23121000 12153000 5317400 4362300 0 0 0 0 1288400 7101 626 6064 42965;42966;42967;42968 27407 27407 1 NPGNQAAYEHFETMK Oxidation (M) 1751.7573 0.75733347 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13;B4DKC9 VCL;HEL114 Vinculin yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 32.633 32.933 3 0.0071177 9239 20181213_JW_Orientia_Karp_1_3 98.582 82.947 56936000 16665000 13651000 20531000 0 0 0 6088800 0 7102 19 6065 42969;42970;42971;42972 27408;27409 27409 14 2 NPGSVAENNLCSQYEEK Unmodified 1937.8425 0.84251967 1611 P20591;F8W8T1;Q8NAA8;P20591-2;H9KVC7;H9KVC9;H9KVD0;H9KVC4 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS By matching 1 1 39.522 39.796 2 5.5977E-17 12811 20181213_JW_Orientia_Karp_1_2 207.31 166.8 12615000 0 6914100 5701300 0 0 0 0 0 7103 1611 6066 42973;42974 27410 27410 1 NPHLITNWGPAAFTEAELEER Unmodified 2394.1604 0.16042341 534 B4E245;E7EMB1;B3KUB9;Q9UH65 SWAP70 Switch-associated protein 70 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 63.461 63.698 3 0.00088414 27223 20181213_JW_Orientia_Karp_1_3 100.95 54.07 40313000 0 15419000 21322000 549640 3022900 0 0 0 7104 534 6067 42975;42976;42977;42978 27411 27411 1 NPIAALNR Unmodified 867.49265 0.49265 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.259 37.592 2 0.0027124 10524 20181213_JW_Orientia_Karp_2_2 158.36 105.72 143860000 56126000 37017000 37335000 4966600 3466000 0 4953600 0 7105 1273 6068 42979;42980;42981;42982;42983;42984;42985 27412;27413;27414;27415;27416;27417;27418 27416 7 NPIQISDVTDIFQCSEFSNLK Unmodified 2454.1737 0.17369021 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 73.921 73.942 2;3 9.0835E-29 34277 20181213_JW_Orientia_Karp_1_2 211.45 174.09 158660000 80261000 38660000 35776000 0 3963400 0 0 0 7106 1168 6069 42986;42987;42988;42989;42990;42991;42992 27419;27420;27421 27420 3 NPNDPNGPMVINPILLNIPQGNPNPVGNPPQR 3 Deamidation (NQ) 3399.6881 0.68813828 1371 Karp_02001 yes yes 0 3 0 0 By MS/MS By matching 1 1 71.909 71.984 3 0.00029071 33042 20181213_JW_Orientia_Karp_1_1 70.488 47.6 59560000 46436000 13124000 0 0 0 0 0 0 7107 1371 6070 42993;42994 27422 27422 846;847;848;849;850;851;852;853;1853;1854 1 NPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Oxidation (M) 3412.731 0.73100615 1371 Karp_02001 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 2 2 2 1 72.281 72.342 3;4 1.0637E-31 33198 20181213_JW_Orientia_Karp_1_2 188.53 136.14 15018000000 3125600000 2691600000 2700600000 567220000 1824700000 1185600000 2638200000 284680000 7108 1371 6070 42995;42996;42997;42998;42999;43000;43001;43002;43003;43004;43005;43006;43007;43008;43009 27423;27424;27425;27426;27427;27428;27429;27430 27425 956 8 NPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Oxidation (M);Deamidation (NQ) 3413.715 0.71502173 1371 Karp_02001 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 2 3 4 4 2 73.215 73.271 3;4 1.3766E-31 26764 20181213_JW_Orientia_Karp_3_1 182.23 148.35 19825000000 4365600000 3573200000 3658500000 1142600000 1787500000 1369100000 3405600000 523340000 7109 1371 6070 43010;43011;43012;43013;43014;43015;43016;43017;43018;43019;43020;43021;43022;43023;43024;43025;43026;43027;43028;43029;43030;43031;43032;43033;43034;43035 27431;27432;27433;27434;27435;27436;27437;27438;27439;27440;27441;27442;27443;27444;27445;27446 27443 846;847;848;849;850;851;852;853;1853;1854 956 15 NPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Unmodified 3396.7361 0.73609153 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 4 2 3 2 2 2 73.761 73.789 3;4;5 3.5611E-25 33947 20181213_JW_Orientia_Karp_1_1 174.61 148.19 9935400000 2072900000 1884800000 3722600000 236760000 464600000 328410000 790200000 435200000 7110 1371 6070 43036;43037;43038;43039;43040;43041;43042;43043;43044;43045;43046;43047;43048;43049;43050;43051;43052;43053 27447;27448;27449;27450;27451;27452;27453;27454;27455;27456 27447 9 NPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Deamidation (NQ) 3397.7201 0.72010711 1371 Karp_02001 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 2 2 3 2 3 2 73.917 73.946 3;4;5 6.8511E-15 26950 20181213_JW_Orientia_Karp_3_1 156.58 103.5 16739000000 5462200000 3275400000 5721200000 317990000 418450000 358530000 1178100000 6898000 7111 1371 6070 43054;43055;43056;43057;43058;43059;43060;43061;43062;43063;43064;43065;43066;43067;43068;43069;43070;43071;43072;43073 27457;27458;27459;27460;27461;27462;27463;27464;27465;27466;27467 27466 846;847;848;849;850;851;852;853;1853;1854 9 NPNDPNGPMVINPILLNIPQGNPNPVGNPPQR 2 Deamidation (NQ) 3398.7041 0.7041227 1371 Karp_02001 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 1 3 3 3 2 73.695 73.737 3;4 2.7583E-07 34860 20181213_JW_Orientia_Karp_1_1 109.74 84.015 693740000 253760000 77971000 34737000 0 35424000 23445000 9893300 258510000 7112 1371 6070 43074;43075;43076;43077;43078;43079;43080;43081;43082;43083;43084;43085;43086;43087;43088;43089;43090;43091 27468;27469;27470;27471;27472;27473;27474;27475;27476;27477;27478;27479;27480;27481;27482 27468 846;847;848;849;850;851;852;853;1853;1854 14 NPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Oxidation (M);2 Deamidation (NQ) 3414.699 0.69903732 1371 Karp_02001 yes yes 0 2 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 4 1 2 74.704 74.713 3;4 1.4341E-06 33907 20181213_JW_Orientia_Karp_1_2 98.073 69.669 512340000 217930000 239590000 31970000 1563200 0 21297000 0 0 7113 1371 6070 43092;43093;43094;43095;43096;43097;43098;43099;43100;43101;43102;43103;43104 27483;27484;27485;27486;27487;27488;27489;27490;27491;27492;27493 27485 846;847;848;849;850;851;852;853;1853;1854 956 11 NPNDPNGPMVINPILLNIPQGNPNPVGNPPQR 4 Deamidation (NQ) 3400.6722 0.67215387 1371 Karp_02001 yes yes 0 4 0 0 By matching By MS/MS 1 1 72.238 72.366 3 0.0021833 29225 20181213_JW_Orientia_Karp_3_2 70.718 40.583 29109000 0 0 0 14332000 0 0 0 14777000 7114 1371 6070 43105;43106 27494 27494 846;847;848;849;850;851;852;853;1853;1854 0 NPNLMIVEQVSR Oxidation (M) 1414.7238 0.7238485 1213 Karp_00875 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 49.867 50.149 2 0.00021416 18822 20181213_JW_Orientia_Karp_1_2 158.06 101.14 46789000 16162000 13664000 9257400 0 0 4822800 0 2882400 7115 1213 6071 43107;43108;43109;43110;43111 27495;27496;27497;27498;27499;27500 27497 773 6 NPNLMIVEQVSR Unmodified 1398.7289 0.72893388 1213 Karp_00875 yes yes 0 0 0 0 By MS/MS By matching 1 1 54.687 54.961 2 0.024161 22505 20181213_JW_Orientia_Karp_1_1 113.67 87.625 9469000 8035300 0 0 1433700 0 0 0 0 7116 1213 6071 43112;43113 27501 27501 0 NPPGFAFVEFEDPR Unmodified 1620.7573 0.75725712 456;558 B2R6F3;P84103-2;P84103;B4DEK2;C9JAB2;Q16629-3;Q16629-2;Q16629-4;Q16629 SFRS3;SRSF3;SRSF7 Serine/arginine-rich splicing factor 3;Serine/arginine-rich splicing factor 7 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.066 68.274 2 1.2755E-11 30728 20181213_JW_Orientia_Karp_1_1 221.09 140.39 285240000 50627000 25238000 47577000 26054000 53012000 24729000 32510000 25494000 7117 456;558 6072 43114;43115;43116;43117;43118;43119;43120;43121 27502;27503;27504;27505;27506;27507;27508;27509;27510 27503 9 NPTDAYLDAMMNEAPGPINFTMFLTMFGEK 4 Oxidation (M) 3429.4913 0.49133723 1498 O14950 MYL12B Myosin regulatory light chain 12B yes yes 0 0 4 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 76.372 76.381 3 3.5659E-05 30984 20181213_JW_Orientia_Karp_2_2 76.31 50.181 41948000 6521300 8364000 10287000 7860300 8915400 0 0 0 7118 1498 6073 43122;43123;43124;43125;43126 27511;27512 27512 1106;1107;1108;1109 2 NPTDEYLDAMMNEAPGPINFTMFLTMFGEK 4 Oxidation (M) 3487.4968 0.49681654 1831 Q53HL1;J3QRS3;P19105;Q2F834;J3KTJ1 MYL12A Myosin regulatory light chain 12A yes no 0 0 4 0 By MS/MS By MS/MS By MS/MS 1 1 1 76.442 76.424 3 6.2157E-06 31388 20181213_JW_Orientia_Karp_2_3 92.798 72.316 21278000 0 0 0 7047500 0 3112100 11118000 0 7119 1831 6074 43127;43128;43129 27513;27514;27515 27514 1457;1458;1459;1460 3 NPVIAQK Unmodified 768.44939 0.4493882 377 V9HW72;A8K690;P31948;P31948-2;P31948-3 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 22.808 23.251 2 0.030593 4711 20181213_JW_Orientia_Karp_2_1 88.734 39.376 5913900 0 0 0 1923100 1507500 1082500 816740 584100 7120 377 6075 43130;43131;43132;43133;43134 27516 27516 1 NPWGEVEWTGR Unmodified 1329.6102 0.61019895 492 B4E1R7;B4DN77;B2RCM3;Q59EF6;P17655-2;P17655 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 54.688 54.978 2 0.00095709 22082 20181213_JW_Orientia_Karp_1_2 130.01 85.143 54785000 14948000 19743000 19651000 0 0 0 0 443830 7121 492 6076 43135;43136;43137;43138 27517;27518 27518 2 NPYYGGESASITPLEDLYK Unmodified 2116.0001 6.61646E-05 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q5SX87;V9GYJ7;V9GYF8;Q5SX90 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 65.08 65.296 2 3.9615E-55 28531 20181213_JW_Orientia_Karp_1_2 293.52 220.56 82572000 23375000 17503000 21351000 0 6748100 5057000 8215700 321360 7122 596 6077 43139;43140;43141;43142;43143;43144;43145 27519;27520;27521;27522;27523;27524;27525 27520 7 NQAFFEIGPVFSK Unmodified 1482.7507 0.75071518 1345 Karp_01521 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 68.667 68.874 2 0.0005816 30872 20181213_JW_Orientia_Karp_1_2 178.71 134.29 232160000 47120000 42475000 40043000 15421000 24921000 12426000 35778000 13980000 7123 1345 6078 43146;43147;43148;43149;43150;43151;43152;43153 27526;27527;27528;27529;27530;27531 27527 6 NQALNTDNYGHDLASVQALQR Unmodified 2327.1254 0.12543488 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 49.791 50.094 3 0.0057164 19240 20181213_JW_Orientia_Karp_1_1 76.118 49.644 65636000 25376000 29245000 0 0 0 7024900 0 3989700 7124 316 6079 43154;43155;43156;43157 27532;27533 27532 2 NQAQQNAGINQPDAPK Unmodified 1692.818 0.81795989 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 30.092 30.475 2 1.4476E-37 8580 20181213_JW_Orientia_Karp_1_1 245.15 168.03 52474000 14226000 5175500 15678000 5363300 2613000 2076900 3426100 3915300 7125 1266 6080 43158;43159;43160;43161;43162;43163;43164;43165 27534;27535;27536;27537;27538;27539 27534 6 NQAQQNAGINQPDAPK Deamidation (NQ) 1693.802 0.80197548 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 31.929 32.229 2 2.0407E-09 9375 20181213_JW_Orientia_Karp_1_1 193.15 147.39 17170000 5213000 5088500 5162800 0 0 0 1705700 0 7126 1266 6080 43166;43167;43168;43169;43170;43171 27540;27541;27542;27543;27544 27540 680 5 NQDATVYVGGLDEK Unmodified 1507.7155 0.71545188 538 Q53FG6;B3KUJ0;Q15427 SF3B4 Splicing factor 3B subunit 4 yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 46.989 47.271 2 0.00028825 16781 20181213_JW_Orientia_Karp_1_3 151.99 99.204 43749000 14077000 0 16580000 5028800 0 4984500 0 3079000 7127 538 6081 43172;43173;43174;43175;43176 27545;27546 27545 2 NQDNLQGWNK Unmodified 1215.5632 0.56324876 461 B2R6S5;P30085-2;P30085;B4DDL4;Q5T0D2;B4DFW6 CMPK;CMPK1 UMP-CMP kinase yes no 0 0 0 0 By MS/MS By MS/MS 1 1 34.914 35.112 2 0.013313 10876 20181213_JW_Orientia_Karp_1_1 112.41 64.668 8446100 0 0 8446100 0 0 0 0 0 7128 461 6082 43177;43178 27547;27548 27547 2 NQEFLQAR Unmodified 1004.5039 0.50394297 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By MS/MS 1 35.816 35.816 2 0.031175 11207 20181213_JW_Orientia_Karp_1_1 93.429 47.456 0 0 0 0 0 0 0 0 0 7129 839 6083 43179 27549 27549 1 NQEQLLTLASILR Unmodified 1497.8515 0.85149185 1771 Q05DB4;Q9Y5Z4;Q9Y5Z4-2 HEBP2 Heme-binding protein 2 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 72.278 72.38 2 3.2452E-11 26561 20181213_JW_Orientia_Karp_3_1 230.59 168.81 34909000 9302200 0 4350200 0 9551300 0 9804500 1901100 7130 1771 6084 43180;43181;43182;43183;43184;43185 27550;27551;27552 27551 3 NQGGGLSSSGAGEGQGPK Unmodified 1586.7285 0.72847619 1568 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 24.926 25.075 2 0.005536 5824 20181213_JW_Orientia_Karp_1_2 98.902 54.699 3343100 1703800 631490 1007700 0 0 0 0 0 7131 1568 6085 43186;43187;43188 27553;27554 27554 2 NQGGYGGSSSSSSYGSGR Unmodified 1693.6928 0.69281896 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q6IPF2;H0YH80;B4E0B5;Q3MI39 HNRNPA1;HNRPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 23.823 24.203 2 7.1889E-68 5405 20181213_JW_Orientia_Karp_1_2 274.38 244.83 25426000 0 4452600 7223200 3204700 2253900 2824900 3767400 1699600 7132 209 6086 43189;43190;43191;43192;43193;43194;43195;43196 27555;27556;27557;27558;27559;27560;27561 27556 7 NQILEQQLK Unmodified 1112.619 0.61897272 1392 Karp_02141 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 38.985 39.292 2 0.00076981 11917 20181213_JW_Orientia_Karp_2_1 149.57 75.318 251850000 59087000 86843000 45723000 20776000 5065200 3918300 30443000 0 7133 1392 6087 43197;43198;43199;43200;43201;43202;43203 27562;27563;27564;27565 27565 4 NQILNLTTDNANILLQIDNAR Unmodified 2366.2554 0.25538642 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 72.953 73.023 2;3 1.101E-48 29486 20181213_JW_Orientia_Karp_3_2 244.18 185 877190000 100670000 109550000 68506000 23527000 101840000 74606000 362710000 35791000 + 7134 798 6088 43204;43205;43206;43207;43208;43209;43210;43211;43212;43213;43214;43215;43216;43217;43218;43219 27566;27567;27568;27569;27570;27571;27572;27573;27574;27575 27575 9 NQINSLLFVK Unmodified 1174.671 0.67100829 189 B3KN60;A0A024RA48;Q86XC4;A0A024R9Z9;B4DGG2;Q9Y5W8-2;Q9Y5W8 SNX13 Sorting nexin-13 yes no 0 0 0 0 By MS/MS 1 42.9 42.9 3 0.032431 14979 20181213_JW_Orientia_Karp_1_1 45.022 0 14996000 14996000 0 0 0 0 0 0 0 7135 189 6089 43220 27576 27576 1 NQINSLLFVK Deamidation (NQ) 1175.655 0.65502388 189 B3KN60;A0A024RA48;Q86XC4;A0A024R9Z9;B4DGG2;Q9Y5W8-2;Q9Y5W8 SNX13 Sorting nexin-13 yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 43.473 43.817 2 0.0068275 14951 20181213_JW_Orientia_Karp_1_2 106.68 56.576 103280000 30764000 26570000 29220000 2977900 0 3259100 10126000 368130 7136 189 6089 43221;43222;43223;43224;43225;43226;43227 27577;27578 27578 74 2 NQLCPCNSGK Unmodified 1176.5016 0.50157648 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS 1 22.814 23.064 2 0.020079 4975 20181213_JW_Orientia_Karp_1_2 97.431 64.59 0 0 0 0 0 0 0 0 0 7137 1374 6090 43228 27579 27579 1 NQLDQEVEFLSTSIAQLK Unmodified 2062.0582 0.058249746 1955 Q99471;H3BPF6;Q99471-2 PFDN5 Prefoldin subunit 5 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 74.656 74.696 2 0.00070486 30417 20181213_JW_Orientia_Karp_2_3 118.52 84.762 18414000 0 0 0 0 5970300 3085000 6189900 3168400 7138 1955 6091 43229;43230;43231;43232 27580 27580 1 NQLTSNPENTVFDAK Unmodified 1676.8006 0.8005785 1585 V9HWB4;P11021;B4DEF7 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.049 47.407 2 3.2781E-38 16801 20181213_JW_Orientia_Karp_1_3 255.15 186.71 296260000 84393000 52618000 64444000 29034000 0 34703000 10025000 21040000 7139 1585 6092 43233;43234;43235;43236;43237;43238;43239;43240 27581;27582;27583;27584;27585;27586;27587;27588;27589 27584 9 NQLTTILEQINK Unmodified 1413.7827 0.78274359 1449 Karp_02529 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 63.58 63.782 2 1.2467E-16 24963 20181213_JW_Orientia_Karp_2_3 218.07 121.41 62618000 14892000 18381000 16918000 1076400 5200500 3764700 0 2385200 7140 1449 6093 43241;43242;43243;43244;43245;43246;43247 27590;27591;27592;27593 27593 4 NQMLSNGFIEFQTPILTASSPEGAR Deamidation (NQ) 2708.3116 0.31158067 1168 Karp_00622 yes yes 0 1 0 0 By MS/MS By matching 1 1 74.055 74.08 3 0.029621 34367 20181213_JW_Orientia_Karp_1_1 55.247 26.089 35058000 24324000 10734000 0 0 0 0 0 0 7141 1168 6094 43248;43249 27594 27594 563 1 NQPQFQQMR Unmodified 1175.5506 0.55057558 557 B7ZA74;B7Z4W4;B4DEA3;P54727-2;P54727;Q53F10 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 32.803 33.136 2 0.034733 9920 20181213_JW_Orientia_Karp_1_1 75.109 38.662 15047000 4514800 3098100 4679500 1103700 0 426310 1224900 0 7142 557 6095 43250;43251;43252;43253;43254;43255 27595 27595 1 NQQLQLIQQK Unmodified 1239.6935 0.69353465 1127 Karp_00330 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.37 40.691 2 6.8096E-26 13232 20181213_JW_Orientia_Karp_1_2 255.54 182.3 911370000 288350000 186510000 116970000 81878000 27555000 28494000 146860000 34741000 7143 1127 6096 43256;43257;43258;43259;43260;43261;43262;43263 27596;27597;27598;27599;27600;27601;27602 27596 6 NQQQLNRQK 5 Deamidation (NQ) 1160.5309 0.53094558 197 A0A024RAC2;Q9NPJ4 PNRC2 Proline-rich nuclear receptor coactivator 2 yes no 0 5 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 70.113 70.253 2 0.030309 31444 20181213_JW_Orientia_Karp_1_3 54.157 21.069 48109000 0 1499300 12223000 0 13555000 2857600 17974000 0 7144 197 6097 43264;43265;43266;43267;43268 27603 27603 81;1321;1322;1323;1324 1 NQQVNYAYPSDPVK Unmodified 1621.7736 0.77363546 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 43.057 43.231 2 6.1792E-12 15021 20181213_JW_Orientia_Karp_1_1 205.12 144.43 152590000 43323000 68350000 32241000 0 8680700 0 0 0 7145 1366 6098 43269;43270;43271;43272;43273;43274 27604;27605;27606;27607;27608;27609 27604 6 NQSLEQTAIDVTS Unmodified 1404.6733 0.67325272 1254 Karp_00934 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 56.545 56.903 2 2.2485E-72 21338 20181213_JW_Orientia_Karp_2_1 293.88 245.92 732190000 233600000 128480000 142530000 66854000 73412000 68493000 14009000 4804000 7146 1254 6099 43275;43276;43277;43278;43279;43280;43281;43282 27610;27611;27612;27613;27614;27615;27616;27617 27614 8 NQSLEQTAIDVTS Deamidation (NQ) 1405.6573 0.6572683 1254 Karp_00934 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 71.5 71.58 2 0.024647 32569 20181213_JW_Orientia_Karp_1_2 93.561 54.756 26479000 0 3699700 7079100 0 4739900 3188000 7772700 0 7147 1254 6099 43283;43284;43285;43286;43287 27618 27618 664;1825 1 NQTAQVLQEK Unmodified 1157.6041 0.60405094 1337 Karp_01411 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.981 29.302 2 2.4622E-12 6523 20181213_JW_Orientia_Karp_2_2 218.94 93.69 184940000 63254000 494610 48978000 19006000 14668000 11218000 27319000 0 7148 1337 6100 43288;43289;43290;43291;43292;43293;43294;43295 27619;27620;27621;27622;27623;27624;27625;27626;27627;27628 27623 10 NQVALNPQNTVFDAK Unmodified 1657.8424 0.84238373 369 A8K5I0;P08107-2;P08107;B4DFN9;B4DNT8;Q59EJ3;B4E388;B4E1T6;B4DNX1 HEL-S-103;HSPA1A Heat shock 70 kDa protein 1A yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.143 51.489 2 3.5884E-13 19718 20181213_JW_Orientia_Karp_1_2 213.99 137.82 113790000 19591000 32166000 19621000 9222900 12322000 7957000 9278600 3629100 7149 369 6101 43296;43297;43298;43299;43300;43301;43302;43303 27629;27630;27631;27632 27630 4 NQVAMNPTNTVFDAK Oxidation (M) 1664.7828 0.78281994 1586 V9HW22;P11142;E9PKE3;Q53GZ6;P11142-2;Q53HF2;E9PNE6;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.524 43.844 2 2.6401E-49 14255 20181213_JW_Orientia_Karp_3_1 267.37 206.68 381140000 75367000 74304000 108220000 40937000 18519000 14883000 34711000 14197000 7150 1586 6102 43304;43305;43306;43307;43308;43309;43310;43311 27633;27634;27635;27636;27637;27638;27639 27638 1208 7 NQVAMNPTNTVFDAK Oxidation (M);Deamidation (NQ) 1665.7668 0.76683553 1586 V9HW22;P11142;E9PKE3;Q53GZ6;P11142-2;Q53HF2;E9PNE6;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 1 1 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 44.101 44.454 2 2.4404E-06 15323 20181213_JW_Orientia_Karp_1_2 183.06 129.47 11808000 5586400 0 0 0 0 1591200 3478300 1151900 7151 1586 6102 43312;43313;43314;43315;43316 27640;27641;27642 27641 1061 1208 3 NQVAMNPTNTVFDAK Unmodified 1648.7879 0.78790532 1586 V9HW22;P11142;E9PKE3;Q53GZ6;P11142-2;Q53HF2;E9PNE6;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 49.903 50.21 2 6.0775E-28 18661 20181213_JW_Orientia_Karp_1_3 238.07 174.38 226470000 47961000 64844000 52601000 23046000 14875000 21965000 1174600 0 7152 1586 6102 43317;43318;43319;43320;43321;43322;43323;43324 27643;27644;27645;27646;27647;27648;27649;27650 27645 8 NQVEESTKQIQVLQAQLQR 5 Deamidation (NQ) 2244.1121 0.11213581 729 C9JA20;C9JCH4;H7BZW9;B7Z863;B7Z964;H7C3M8;H7BZK0;Q14BN4-8;Q14BN4-5;Q14BN4-4;Q14BN4-2;Q14BN4-3;Q14BN4 SLMAP Sarcolemmal membrane-associated protein yes no 0 5 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 72.669 72.78 2 0.017876 33111 20181213_JW_Orientia_Karp_1_3 59.306 23.783 54956000 0 20096000 11785000 4719200 0 0 14420000 3935600 7153 729 6103 43325;43326;43327;43328;43329 27651 27651 239;1610;1611;1612;1613 1 NQVSQLLPEK Unmodified 1154.6295 0.62953741 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-2 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 43.554 43.854 2 0.00093054 15048 20181213_JW_Orientia_Karp_1_2 125.71 48.395 41471000 11490000 10317000 18576000 0 0 0 1089000 0 7154 2015 6104 43330;43331;43332;43333 27652;27653 27653 2 NQWIDNVEK Unmodified 1144.5513 0.55128709 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13;B4DKC9 VCL;HEL114 Vinculin yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 42.554 42.892 2 0.011429 14306 20181213_JW_Orientia_Karp_1_3 91.265 11.359 45234000 0 18623000 12921000 0 3416600 0 10273000 0 7155 19 6105 43334;43335;43336;43337 27654 27654 1 NQYCDQLVATNEK Unmodified 1581.7093 0.70932065 1181 Karp_00658 yes yes 0 0 0 0 By MS/MS 1 38.319 38.518 2 0.0029923 12086 20181213_JW_Orientia_Karp_1_3 117.98 49.082 7921500 0 0 7921500 0 0 0 0 0 7156 1181 6106 43338 27655 27655 1 NRAEQWNVNYVETSAK Unmodified 1907.9126 0.91258856 1588 P11233;H7C3P7 RALA Ras-related protein Ral-A yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 40.902 41.153 3 0.00098834 12897 20181213_JW_Orientia_Karp_3_1 128.82 92.224 30176000 12531000 0 11139000 0 1145400 0 5360500 0 7157 1588 6107 43339;43340;43341;43342;43343 27656;27657;27658 27658 3 NRPAPYSRPK Unmodified 1184.6414 0.6414395 886 E9PB61;Q86V81 ALYREF THO complex subunit 4 yes no 0 0 0 2 By matching By MS/MS 1 1 15.202 15.476 3 0.036606 2445 20181213_JW_Orientia_Karp_1_3 97.472 60.127 7970500 0 5600100 2370400 0 0 0 0 0 7158 886 6108 43344;43345 27659 27659 1 NRVEELNDITEK Unmodified 1458.7314 0.7314363 1081 Karp_00113 no no 0 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 34.897 35.213 2 1.9191E-05 9680 20181213_JW_Orientia_Karp_2_1 179.94 0 104170000 19087000 0 60177000 5986000 4948600 3795800 10181000 0 7159 1081 6109 43346;43347;43348;43349;43350;43351 27660;27661;27662 27660 3 NRVEELSDITEK Unmodified 1431.7205 0.72053726 1151 Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 1 2 37.099 37.408 2;3 1.0888E-10 11524 20181213_JW_Orientia_Karp_1_2 209.19 113.83 398500000 160490000 97127000 75961000 17652000 20291000 577700 26395000 0 7160 1151 6111 43352;43353;43354;43355;43356;43357;43358;43359;43360;43361;43362;43363 27663;27664;27665;27666;27667;27668 27664 6 NSDPWAASQQPASSAGK Unmodified 1700.7754 0.77542638 8 I3L356;B7Z4W7;I3L2H1;B7Z3A5;F6PQP6;E9PBC1;B3KMB3;I3L2B2;B7ZKM5;A0A024QYY1;O95208-5;O95208-3;O95208-2;O95208 EPN2 Epsin-2 yes no 0 0 0 0 By MS/MS By matching 1 1 37.878 38.053 2 0.0013873 12333 20181213_JW_Orientia_Karp_1_1 115.82 73.605 1756100 1351900 404280 0 0 0 0 0 0 7161 8 6112 43364;43365 27669 27669 1 NSDVEIFAVGVK Unmodified 1276.6663 0.66631685 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 58.146 58.411 2 0.00078935 24680 20181213_JW_Orientia_Karp_1_1 168.85 123.71 51201000 20822000 15025000 14563000 0 0 0 0 790660 7162 852 6113 43366;43367;43368;43369 27670;27671;27672;27673 27670 4 NSEEQQLILELHR Unmodified 1607.8267 0.82673367 1330 Karp_01368 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 49.202 49.528 3 1.0767E-11 18263 20181213_JW_Orientia_Karp_1_3 199.4 137.92 95262000 13391000 32494000 17865000 19906000 0 6169600 0 5436700 7163 1330 6114 43370;43371;43372;43373;43374;43375 27674;27675 27675 2 NSENLTANNTLSKPTR 4 Deamidation (NQ) 1762.8221 0.8221018 965 H0Y2U3;H0Y3E4;Q8IWP8;Q70T25;H0Y9S0;Q8WWL3;Q9HCX4-2;Q9HCX4-3;Q9HCX4 TRPC7;TRP7 Short transient receptor potential channel 7 yes no 0 4 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 61.013 61.407 2 0.017171 26233 20181213_JW_Orientia_Karp_1_2 74.962 10.738 163220000 0 31352000 0 37887000 44169000 26421000 8560700 14833000 7164 965 6115 43376;43377;43378;43379;43380;43381 27676 27676 338;339;340;341 1 NSFQPISSLR Unmodified 1147.5986 0.59857163 1756 Q7Z3D7;P98175-4;P98175-3;P98175-2;P98175 DKFZp686E2459;RBM10 RNA-binding protein 10 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 46.694 47.131 2 0.035761 15045 20181213_JW_Orientia_Karp_3_2 74.533 31.669 12050000 0 4825300 0 3258800 0 0 0 3966400 7165 1756 6116 43382;43383;43384 27677 27677 1 NSGAIMVDR Unmodified 961.46511 0.46511462 1452 Karp_02533 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 32.75 33.024 2 0.028055 9775 20181213_JW_Orientia_Karp_1_1 79.201 38.933 38902000 16392000 10460000 10144000 1905900 0 0 0 0 7166 1452 6117 43385;43386;43387;43388 27678 27678 1 NSGFMNCNISSSVELSPAK Oxidation (M) 2056.9194 0.91938978 1444 Karp_02422 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 50.127 50.464 2 0.00064634 18889 20181213_JW_Orientia_Karp_1_3 115.04 92.961 17413000 0 5028300 7860000 0 2143900 0 2381200 0 7167 1444 6118 43389;43390;43391;43392 27679;27680;27681 27680 1047 3 NSGIINNKPQK Deamidation (NQ) 1212.6463 0.64625011 1404 Karp_02212 yes yes 0 1 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 21.981 22.289 2 0.01895 4656 20181213_JW_Orientia_Karp_1_2 123.21 9.5016 10102000 0 6897500 933460 774800 651750 411970 432920 0 7168 1404 6119 43393;43394;43395;43396;43397;43398 27682;27683 27682 1874 2 NSGIINNKPQK Unmodified 1211.6622 0.66223452 1404 Karp_02212 yes yes 0 0 0 1 By MS/MS 1 17.771 18.222 2 0.03394 2731 20181213_JW_Orientia_Karp_2_2 122.33 45.851 173270 0 0 0 0 173270 0 0 0 7169 1404 6119 43399 27684 27684 1 NSILAQVLDQSAR Unmodified 1413.7576 0.75759147 1492 O14737;K7EQA1;O14737-2;K7ESJ4 PDCD5 Programmed cell death protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 61.878 62.116 2 2.2559E-09 24285 20181213_JW_Orientia_Karp_2_1 232.78 143.7 83756000 0 18474000 9014400 0 43123000 13145000 0 0 7170 1492 6120 43400;43401;43402;43403;43404 27685;27686;27687;27688;27689 27687 4 NSINQYR Deamidation (NQ) 894.41954 0.41954463 2039 yes no 0 1 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 2 1 1 1 2 28.197 28.555 2 0.028833 7225 20181213_JW_Orientia_Karp_1_3 110.34 7.5639 1054700000 191970000 212890000 403120000 0 83172000 36038000 59535000 67936000 + 7171 2039 6121 43405;43406;43407;43408;43409;43410;43411;43412;43413 27690;27691 27690 1245;2121 2 NSITLTNLTPGTEYVVSIVALNGR Deamidation (NQ) 2532.3435 0.34353273 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 0 0 By matching By matching By matching By MS/MS 1 1 1 1 75.072 75.084 3 0.022923 28009 20181213_JW_Orientia_Karp_3_1 59.55 38.925 19196000 0 0 8778300 1192500 3522100 0 5703000 0 7172 85 6122 43414;43415;43416;43417 27692 27692 44 1 NSLESYAFNMK Oxidation (M) 1318.5864 0.58635197 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96BE0;Q96H53;E9PS65;Q9NZ87;Q9NWW3;E9PM13 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 45.044 45.374 2 3.3853E-09 14953 20181213_JW_Orientia_Karp_3_1 197.79 148.7 101640000 36391000 28188000 19001000 11688000 0 0 6372800 0 7173 1586 6123 43418;43419;43420;43421;43422 27693;27694;27695;27696;27697 27697 1209 5 NSLMNKASNYEK 3 Deamidation (NQ) 1400.613 0.61296065 1993 Q9P0B6 CCDC167 Coiled-coil domain-containing protein 167 yes yes 0 3 0 1 By MS/MS By matching By matching 1 1 1 46.558 47.041 2 0.011101 16662 20181213_JW_Orientia_Karp_1_2 103.55 60.104 102560000 0 100680000 0 1447200 0 0 433810 0 7174 1993 6124 43423;43424;43425 27698 27698 1231;1232;1233 1 NSMEQYISSEAFDYHHGK Oxidation (M) 2157.9062 0.90618255 1415 Karp_02252 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.881 39.189 4 0.005497 12439 20181213_JW_Orientia_Karp_1_2 88.951 72.274 473430000 97732000 155860000 123310000 35882000 14437000 3310800 42890000 0 7175 1415 6125 43426;43427;43428;43429;43430;43431;43432 27699;27700;27701;27702;27703;27704;27705 27700 1021 6 NSMEQYISSEAFDYHHGK Oxidation (M);Deamidation (NQ) 2158.8902 0.89019814 1415 Karp_02252 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 44.535 44.725 4 0.00093283 15969 20181213_JW_Orientia_Karp_1_1 103.77 82.801 169830000 61307000 69720000 33332000 0 222360 5244100 0 0 7176 1415 6125 43433;43434;43435;43436;43437 27706;27707;27708 27706 933;1875 1021 3 NSMEQYISSEAFDYHHGK Unmodified 2141.9113 0.91126793 1415 Karp_02252 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 1 46.516 46.798 3;4 0.0001106 15683 20181213_JW_Orientia_Karp_2_2 130.02 95.087 847300000 255420000 278470000 168070000 27360000 28207000 63512000 645160 25621000 7177 1415 6125 43438;43439;43440;43441;43442;43443;43444;43445;43446;43447;43448;43449;43450;43451 27709;27710;27711;27712;27713;27714;27715 27713 7 NSMEQYISSEAFDYHHGK Deamidation (NQ) 2142.8953 0.89528352 1415 Karp_02252 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 52.702 52.983 3;4 0.00045679 20848 20181213_JW_Orientia_Karp_1_2 114.58 92.696 386450000 148140000 38550000 71192000 47464000 27824000 48767000 4513000 0 7178 1415 6125 43452;43453;43454;43455;43456;43457;43458;43459;43460;43461;43462;43463;43464 27716;27717;27718;27719;27720 27716 933;1875 5 NSMESQQRIRMMK 2 Oxidation (M);Deamidation (NQ) 1670.7538 0.75384477 1915 Q8TAT5 NEIL3 Endonuclease 8-like 3 yes yes 0 1 2 2 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 40.186 40.506 2 0.031578 12162 20181213_JW_Orientia_Karp_2_2 72.643 20.365 117050000 32567000 22214000 27932000 8908400 5115900 6405600 12555000 1347700 7179 1915 6126 43465;43466;43467;43468;43469;43470;43471;43472 27721;27722;27723 27722 2051;2052 2 NSMPASSFQQQK Oxidation (M) 1367.614 0.6139637 419 B8ZZ10;A8MYV2;D3DU41;Q1W6G4;Q53G47;Q9NQ29-2;Q9NQ29-3;Q9NQ29;B3KRR1;B3KSL5;Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9Y383 LUC7L;LUC7L2 Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2 yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 25.499 25.884 2 0.032978 6103 20181213_JW_Orientia_Karp_1_2 73.781 7.4826 6680400 795530 2859000 0 763420 0 535940 954580 771950 7180 419 6127 43473;43474;43475;43476;43477;43478 27724 27724 1 NSNDPAVFK Deamidation (NQ) 991.46108 0.4610751 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 44.072 44.272 2 0.0071241 15261 20181213_JW_Orientia_Karp_1_2 109.48 37.601 15851000 7498800 4842300 3049400 0 0 460330 0 0 7181 274 6128 43479;43480;43481;43482 27725;27726 27726 102 1 NSNDPAVFK Unmodified 990.47706 0.47705951 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 33.293 33.63 2 0.0027611 9684 20181213_JW_Orientia_Karp_1_2 114.89 66.979 44301000 0 18083000 18506000 6101600 1609700 0 0 0 7182 274 6128 43483;43484;43485;43486 27727;27728 27727 2 NSNEYVQHMINSFNQNYNK Oxidation (M) 2359.0288 0.028757306 1266 Karp_01074 yes yes 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 40.444 40.718 3 0.0046069 13318 20181213_JW_Orientia_Karp_1_2 96.435 76.08 10566000 0 5351100 5215000 0 0 0 0 0 7183 1266 6129 43487;43488;43489 27729;27730 27729 831 2 NSNEYVQHMINSFNQNYNK Deamidation (NQ) 2344.0179 0.017858269 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS By MS/MS 1 1 46.327 46.677 3 0.010706 16297 20181213_JW_Orientia_Karp_1_3 108.18 83.884 6793100 0 6793100 0 0 0 0 0 0 7184 1266 6129 43490;43491 27731;27732 27732 681 2 NSNIEELLR Unmodified 1086.5669 0.56693715 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.361 50.611 2 0.00019069 18951 20181213_JW_Orientia_Karp_1_3 183.43 109.77 163270000 38172000 34308000 21467000 36756000 16318000 16247000 0 0 7185 1188 6130 43492;43493;43494;43495;43496;43497 27733;27734;27735;27736;27737;27738 27735 6 NSNIELNSNADWK Unmodified 1503.6954 0.69538514 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 44.491 44.843 2 3.0336E-11 15434 20181213_JW_Orientia_Karp_1_3 198.97 138.28 18843000 0 0 9426400 0 1686600 2735600 4174200 820630 7186 1193 6131 43498;43499;43500;43501;43502;43503 27739;27740;27741;27742 27739 4 NSNIELNSNADWK Deamidation (NQ) 1504.6794 0.67940073 1193 Karp_00798 yes yes 0 1 0 0 By MS/MS By matching 1 1 48.185 48.585 2 0.019772 16708 20181213_JW_Orientia_Karp_2_1 97.779 49.038 11570000 0 0 0 8085200 0 3484700 0 0 7187 1193 6131 43504;43505 27743 27743 608 1 NSNILEDLETLR Unmodified 1415.7256 0.72562264 432 B0YIW5;Q6MZV5;B0YIW6;P48444;Q6P1Q5 ARCN1;DKFZp686M09245 Coatomer subunit delta yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 67.333 67.554 2 0.001115 29994 20181213_JW_Orientia_Karp_1_2 132.56 62.753 18499000 8430800 3750600 4406900 350070 0 0 0 1560300 7188 432 6132 43506;43507;43508;43509;43510 27744 27744 1 NSNLVGAAHEELQQSR Unmodified 1751.8551 0.85507368 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 1 1 2 36.509 36.856 2;3 9.3638E-13 10545 20181213_JW_Orientia_Karp_2_1 217.19 126.06 862010000 268560000 304890000 169970000 27294000 26537000 11936000 47914000 4909200 7189 1543;1544;1851 6133 43511;43512;43513;43514;43515;43516;43517;43518;43519;43520;43521;43522 27745;27746;27747;27748;27749;27750;27751;27752;27753;27754;27755;27756 27751 12 NSNLVGAAHEELQQSR Deamidation (NQ) 1752.8391 0.83908927 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 1 0 0 By matching By matching By MS/MS By matching By matching 1 1 2 1 1 43.929 44.219 2 0.0012463 15005 20181213_JW_Orientia_Karp_1_3 132.24 82.31 25272000 8926900 5386400 8337200 0 0 990620 1630700 0 7190 1543;1544;1851 6133 43523;43524;43525;43526;43527;43528 27757;27758 27757 1027;1028 2 NSQGQAIVERTNRTLK Acetyl (Protein N-term);2 Deamidation (NQ) 1857.9545 0.95445338 2062 S5GGH1 pol yes yes 1 2 0 2 By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 2 1 1 1 1 36.12 36.421 4 0.018289 10674 20181213_JW_Orientia_Karp_2_2 60.937 36.746 855490000 825830000 6740700 12479000 623620 3290100 914800 0 5605200 7191 2062 6134 43529;43530;43531;43532;43533;43534;43535;43536 27759;27760 27760 2126;2127 2 NSQIAEHLALLPIK Unmodified 1545.8879 0.88787736 1277 Karp_01109 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 2 2 2 1 55.781 56.132 2;3 0.00042425 20945 20181213_JW_Orientia_Karp_2_1 147.71 101.8 258860000 22166000 25779000 81279000 8658100 49992000 62894000 5607900 2482800 7192 1277 6135 43537;43538;43539;43540;43541;43542;43543;43544;43545;43546;43547;43548;43549 27761;27762;27763;27764;27765;27766 27763 6 NSQIAEHLALLPIK Deamidation (NQ) 1546.8719 0.87189295 1277 Karp_01109 yes yes 0 1 0 0 By matching By MS/MS By matching By matching 1 1 1 1 65.363 65.526 3 0.0041361 28371 20181213_JW_Orientia_Karp_1_3 127.79 75.1 21576000 0 2756800 7874600 0 8162200 2781900 0 0 7193 1277 6135 43550;43551;43552;43553 27767;27768 27767 1834 2 NSQWICSNEECPGECLVTGQSHFK Unmodified 2866.2109 0.21089713 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 51.087 51.54 3 8.3653E-05 19732 20181213_JW_Orientia_Karp_1_3 112.53 91.279 47069000 0 18779000 22024000 0 0 0 4988400 1277800 7194 1466;1549 6136 43554;43555;43556;43557 27769;27770;27771;27772;27773 27771 5 NSRPEANEALER Unmodified 1384.6695 0.66950474 1863 Q6FIC5;Q9Y696;B4DWC4;Q9NVF8 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 23.664 23.982 3 0.009012 5256 20181213_JW_Orientia_Karp_1_2 141.34 80.652 18456000 798110 4546600 0 4499200 3468300 3183500 0 1960000 7195 1863 6137 43558;43559;43560;43561;43562;43563 27774 27774 1 NSSPVKNEEEIAQVATVSSNGDR Deamidation (NQ) 2431.1463 0.14628948 1296 Karp_01187 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 2 1 44.308 44.64 3 0.00030877 15703 20181213_JW_Orientia_Karp_1_2 116.04 86.439 121800000 26910000 57971000 11051000 5722200 7290600 0 11675000 1176800 7196 1296 6138 43564;43565;43566;43567;43568;43569;43570;43571;43572 27775;27776;27777;27778;27779;27780;27781 27777 713;714;715;1835 6 NSSPVKNEEEIAQVATVSSNGDR 2 Deamidation (NQ) 2432.1303 0.13030507 1296 Karp_01187 yes yes 0 2 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 49.517 49.827 3 6.9703E-05 18968 20181213_JW_Orientia_Karp_1_1 126.9 102.53 260340000 55586000 67165000 69766000 37751000 20764000 0 0 9309000 7197 1296 6138 43573;43574;43575;43576;43577;43578 27782;27783;27784;27785 27782 713;714;715;1835 3 NSSPVKNEEEIAQVATVSSNGDR 3 Deamidation (NQ) 2433.1143 0.11432065 1296 Karp_01187 yes yes 0 3 0 1 By matching By MS/MS 1 1 56.821 57.096 3 0.01242 23224 20181213_JW_Orientia_Karp_1_3 65.207 40.314 15964000 0 8950400 7013200 0 0 0 0 0 7198 1296 6138 43579;43580 27786 27786 713;714;715;1835 1 NSSPVKNEEEIAQVATVSSNGDREIGEK Deamidation (NQ) 2987.432 0.4319664 1296 Karp_01187 yes yes 0 1 0 2 By matching By MS/MS By matching By matching 1 1 1 1 44.764 44.952 4 0.0031235 15676 20181213_JW_Orientia_Karp_1_2 63.979 30.313 66113000 6823000 47254000 0 0 1998700 10038000 0 0 7199 1296 6139 43581;43582;43583;43584 27787 27787 713;714;715;1835 1 NSSPVKNEEEIAQVATVSSNGDREIGEK 2 Deamidation (NQ) 2988.416 0.41598198 1296 Karp_01187 yes yes 0 2 0 2 By MS/MS 1 48.801 49 4 0.016263 17931 20181213_JW_Orientia_Karp_1_3 47.806 23.455 17605000 0 0 17605000 0 0 0 0 0 7200 1296 6139 43585 27788 27788 713;714;715;1835 1 NSSVSANCDFSQYR Unmodified 1633.6791 0.67908315 1289 Karp_01161 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 39.837 40.153 2 0.0052594 12899 20181213_JW_Orientia_Karp_1_2 108.72 76.462 5728700 0 3934500 0 0 446960 537600 0 809700 7201 1289 6140 43586;43587;43588;43589;43590 27789;27790 27790 2 NSSYFVEWIPNNVK Unmodified 1695.8257 0.82567103 1566;1747;1550;1964;602 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q6P602;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;A4UCT2;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386;B4DMJ5 TUBB4A;TUBB;TUBB2C;TUBB4B;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 65.026 65.248 2 7.0022E-35 22614 20181213_JW_Orientia_Karp_3_1 250.51 177.01 184030000 63089000 0 73294000 0 20015000 0 21077000 6550800 7202 1550;1566;1747;1964;602 6141 43591;43592;43593;43594;43595 27791;27792;27793;27794;27795;27796 27794 6 NSSYFVEWIPNNVK Deamidation (NQ) 1696.8097 0.80968662 1566;1747;1550;1964;602 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q6P602;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;A4UCT2;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386;B4DMJ5 TUBB4A;TUBB;TUBB2C;TUBB4B;TUBB6 Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-6 chain no no 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 67.371 67.591 2 2.9396E-34 23743 20181213_JW_Orientia_Karp_3_1 242.97 182.57 223200000 68454000 44529000 39730000 0 20386000 9677600 25552000 14873000 7203 1550;1566;1747;1964;602 6141 43596;43597;43598;43599;43600;43601;43602;43603 27797;27798;27799;27800;27801;27802 27801 214 6 NSSYVHGGLDSNGKPADAVYGQK Deamidation (NQ) 2364.0982 0.09821708 1790 Q6FI03;Q5U0Q1;Q53HH4;Q13283;Q6ZP53;Q32P45;E5RI46;E5RIF8;E5RH42;E5RIZ6;E5RJU8;Q13283-2 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 0 1 0 1 By MS/MS 1 37.241 37.44 3 0.042365 11454 20181213_JW_Orientia_Karp_1_3 52.09 27.541 6583500 0 0 6583500 0 0 0 0 0 7204 1790 6142 43604 27803 27803 0 NSVTPDMMEEMYK 2 Oxidation (M) 1605.6361 0.63608063 286 B3KTM6;A2RUM7;P46777 RPL5 60S ribosomal protein L5 yes no 0 0 2 0 By MS/MS By matching By matching By matching 1 1 1 1 37.527 37.802 2 0.012079 12131 20181213_JW_Orientia_Karp_1_1 87.258 46.264 15026000 3469000 4973200 6003200 580580 0 0 0 0 7205 286 6143 43605;43606;43607;43608 27804;27805 27804 205;206;207 2 NSVTPDMMEEMYK 3 Oxidation (M) 1621.631 0.63099525 286 B3KTM6;A2RUM7;P46777 RPL5 60S ribosomal protein L5 yes no 0 0 3 0 By MS/MS By MS/MS 1 1 32.33 32.505 2 0.019884 9133 20181213_JW_Orientia_Karp_1_2 67.385 32.498 0 0 0 0 0 0 0 0 0 7206 286 6143 43609;43610 27806;27807 27807 205;206;207 2 NSVTPDMMEEMYK Oxidation (M) 1589.6412 0.64116601 286 B3KTM6;A2RUM7;P46777 RPL5 60S ribosomal protein L5 yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 46.576 46.909 2 0.012814 16484 20181213_JW_Orientia_Karp_1_3 108.56 89.321 22198000 8818900 10528000 0 0 887880 0 565670 1397900 7207 286 6143 43611;43612;43613;43614;43615;43616 27808;27809;27810 27809 205;206;207 3 NSYNHHQPLLK 2 Deamidation (NQ) 1351.6521 0.65206377 1025 J3KN18;Q7Z5Q1-7;Q7Z5Q1-5;Q7Z5Q1-4;Q7Z5Q1-6;Q7Z5Q1-3;Q7Z5Q1;Q7Z5Q1-8;Q7Z5Q1-9 CPEB2 Cytoplasmic polyadenylation element-binding protein 2 yes no 0 2 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 34.108 34.438 3 0.018141 10555 20181213_JW_Orientia_Karp_1_1 75.652 8.732 17776000 4919500 0 8891900 1322100 1442300 0 1200600 0 7208 1025 6144 43617;43618;43619;43620;43621 27811 27811 375;376 1 NSYVAGQYDDAASYQR Unmodified 1806.7809 0.78090569 391 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;P11413-3;P11413-2;Q0PHS1;E7EM57;E7EUI8;B4DYA7;E9PD92;Q0PHS5 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 41.327 41.628 2 3.2889E-204 14176 20181213_JW_Orientia_Karp_1_1 379.08 317.52 64367000 13438000 19439000 23343000 7046600 0 0 0 1100500 7209 391 6145 43622;43623;43624;43625;43626 27812;27813;27814;27815 27812 4 NTAEWLLSHTK Unmodified 1298.6619 0.66190017 953 G3V2H3;G3V5M2;V9HWH6;Q8N7G1;P00491 PNP;HEL-S-156an Purine nucleoside phosphorylase yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 44.36 44.83 2 0.00029792 15141 20181213_JW_Orientia_Karp_2_3 150.09 111.34 8219100 0 0 0 0 0 5031200 2490200 697760 7210 953 6146 43627;43628;43629 27816 27816 1 NTDQASMPDNTAAQK Oxidation (M) 1606.6893 0.68931349 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 20.523 20.785 2 8.413E-95 4081 20181213_JW_Orientia_Karp_1_2 310.34 257.26 13712000 5748600 3181200 2323900 717510 319200 247980 1173900 0 7211 47 6147 43630;43631;43632;43633;43634;43635;43636;43637 27817;27818;27819;27820;27821;27822;27823 27818 50 7 NTEVIGISVDSHFCHK Unmodified 1841.873 0.87303193 1399 Karp_02188 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 43.879 44.169 3 0.0054218 15278 20181213_JW_Orientia_Karp_1_2 88.507 49.083 194830000 35896000 68455000 51846000 0 0 12551000 26080000 0 7212 1399 6148 43638;43639;43640;43641;43642 27824;27825 27825 2 NTFAEVTGLSPGVTYYFK Unmodified 1992.9833 0.98329389 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 69.865 69.981 2 2.0069E-83 31660 20181213_JW_Orientia_Karp_1_2 353.45 270.95 243540000 88338000 42283000 39336000 0 16222000 6124500 51235000 0 7213 85 6149 43643;43644;43645;43646;43647;43648 27826;27827;27828;27829;27830 27827 5 NTFFATK Deamidation (NQ) 828.40177 0.4017693 1074 Karp_00050 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 1 2 1 2 50.448 50.784 1;2 0.019223 19076 20181213_JW_Orientia_Karp_1_3 143.89 75.402 171400000 29280000 18127000 28578000 49703000 13549000 25962000 4569100 1635600 7214 1074 6150 43649;43650;43651;43652;43653;43654;43655;43656;43657;43658;43659;43660;43661 27831;27832;27833;27834;27835;27836 27833 420 6 NTFFATK Unmodified 827.41775 0.41775372 1074 Karp_00050 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 38.154 38.47 2 0.011669 11347 20181213_JW_Orientia_Karp_2_1 124.08 63.281 1187800000 368710000 470650000 157630000 73923000 46153000 0 70690000 0 7215 1074 6150 43662;43663;43664;43665;43666;43667;43668;43669;43670;43671;43672;43673 27837;27838;27839;27840;27841 27838 5 NTFQIAR Unmodified 848.45045 0.45045083 1131 Karp_00376 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 35.524 35.882 2 0.01164 10298 20181213_JW_Orientia_Karp_2_3 120.46 60.099 503400000 201290000 107430000 82898000 11661000 46861000 5997200 37366000 9885400 7216 1131 6151 43674;43675;43676;43677;43678;43679;43680;43681 27842;27843;27844;27845;27846;27847;27848 27847 7 NTGIICTIGPASR Unmodified 1358.6976 0.69763375 1597 V9HWB8;P14618;A0A024R5Z9;P14618-2;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS 1 47.18 47.832 2 0.0037294 16189 20181213_JW_Orientia_Karp_3_1 115.37 70.005 2640800 0 0 0 0 0 0 2640800 0 7217 1597 6152 43682 27849 27849 1 NTGSVEVQCAILTER Unmodified 1675.8199 0.81993373 1128 Karp_00331 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 49.941 50.248 2 3.9886E-134 18678 20181213_JW_Orientia_Karp_1_3 334.53 232.63 436870000 64942000 136200000 101010000 46980000 39010000 33181000 15545000 0 7218 1128 6153 43683;43684;43685;43686;43687;43688;43689;43690 27850;27851;27852;27853;27854;27855;27856;27857 27852 8 NTGSVEVQCAILTER Deamidation (NQ) 1676.8039 0.80394931 1128 Karp_00331 yes yes 0 1 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 59.698 60.058 2 0.0044926 25077 20181213_JW_Orientia_Karp_1_3 119.96 65.704 21732000 0 8880600 6366800 2158000 3363700 0 962650 0 7219 1128 6153 43691;43692;43693;43694;43695 27858 27858 517 1 NTIEELK Unmodified 845.44945 0.44944778 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 31.901 32.217 2 0.015537 8270 20181213_JW_Orientia_Karp_2_1 110.81 6.5986 44370000 16601000 16679000 5342900 1555600 1004900 1074200 0 2112600 7220 1266 6154 43696;43697;43698;43699;43700;43701;43702 27859;27860;27861 27860 3 NTKNEITELTRFIQR 2 Deamidation (NQ) 1863.969 0.96904081 822 CON__Q9R0H5 yes yes 0 2 0 2 By MS/MS 1 67.199 67.447 3 0.036144 26950 20181213_JW_Orientia_Karp_2_1 57.414 6.9465 0 0 0 0 0 0 0 0 0 + 7221 822 6155 43703 27862 27862 1 NTLEWCLPVIDAK Unmodified 1557.7861 0.78611441 432 B0YIW5;Q6MZV5;B0YIW6;P48444;P48444-2 ARCN1;DKFZp686M09245 Coatomer subunit delta yes no 0 0 0 0 By MS/MS By matching 1 1 70.058 70.183 2 0.025225 31981 20181213_JW_Orientia_Karp_1_1 89.301 41.329 7274400 4689600 0 0 0 0 0 2584800 0 7222 432 6156 43704;43705 27863 27863 1 NTLLIAGLQAR Unmodified 1168.6928 0.69280637 198 A0A024RAD5;P39656-2;P39656-3;P39656 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS 1 56.113 56.113 2 0.023909 23174 20181213_JW_Orientia_Karp_1_1 83.045 42.321 13179000 13179000 0 0 0 0 0 0 0 7223 198 6157 43706 27864 27864 1 NTLQLHR Unmodified 880.4879 0.48789897 73 A0A024R2Q4;P61313;B4DLP4 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 22.652 23.157 2 0.022664 5024 20181213_JW_Orientia_Karp_1_3 98.997 19.057 2555800 0 0 1797000 0 0 0 0 758850 7224 73 6158 43707;43708 27865;27866 27865 2 NTNAGAPPGTAYQSPLPLSR Unmodified 2011.0123 0.012302606 562 B4DF00;E9PDF2;E9PCR7;Q02218-2;Q02218;C9J4G7;Q02218-3 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 52.911 53.094 2 0.034649 20702 20181213_JW_Orientia_Karp_1_3 67.326 33.737 15733000 2282400 8502200 4948400 0 0 0 0 0 7225 562 6159 43709;43710;43711 27867 27867 1 NTNPNFVR Unmodified 960.47773 0.47772821 47;944 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 29.744 30.093 2 0.004443 7871 20181213_JW_Orientia_Karp_1_3 131.03 72.216 76338000 29767000 0 26904000 5657600 0 0 14011000 0 7226 47;944 6160 43712;43713;43714;43715;43716;43717;43718 27868;27869;27870;27871;27872;27873 27868 6 NTNVEELASNFVDESEK Unmodified 1923.8698 0.86978027 1398 Karp_02184 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 61.782 62.034 2;3 5.3258E-07 23091 20181213_JW_Orientia_Karp_3_2 162.64 91.959 153780000 51869000 26009000 36723000 0 22334000 10150000 0 6689700 7227 1398 6161 43719;43720;43721;43722;43723;43724;43725;43726;43727;43728;43729;43730 27874;27875;27876 27876 3 NTQIDNSWGSEER Unmodified 1534.6648 0.6648133 9 Q8WYQ7;B3KWW5;A0A024QZ02;A0A024QZ55;O00182-2;O00182;B4DJD7 LGALS9 Galectin;Galectin-9 yes no 0 0 0 0 By MS/MS By matching 1 1 38.451 38.551 2 0.004974 12655 20181213_JW_Orientia_Karp_1_1 110.98 0 17112000 6807000 0 10305000 0 0 0 0 0 7228 9 6162 43731;43732 27877 27877 1 NTQMVSSNIITPISLDDVPPR Oxidation (M);Deamidation (NQ) 2313.1522 0.15222649 233 A0A024RC53;O60658-6;O60658-2;O60658 PDE8A High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A yes no 0 1 1 0 By MS/MS 1 74.991 74.991 2 0.042626 34951 20181213_JW_Orientia_Karp_1_1 51.726 14.781 10101000 10101000 0 0 0 0 0 0 0 7229 233 6163 43733 27878 27878 1339 0 NTQRNPR Acetyl (Protein N-term);3 Deamidation (NQ) 929.42027 0.42027292 768 C9JC74 ITPKA yes yes 1 3 0 1 By matching By MS/MS 1 1 39.299 39.751 2 0.03181 12296 20181213_JW_Orientia_Karp_3_1 54.787 10.065 32544000 0 0 0 0 0 12944000 19600000 0 7230 768 6164 43734;43735 27879 27879 252;253;1633 1 NTSATFIIMPVSVPTQEFVSAPT Oxidation (M) 2452.2196 0.21957777 1058 Karp_00002 yes yes 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 75.818 75.833 2 0.0019605 35241 20181213_JW_Orientia_Karp_1_3 97.579 66.508 21362000 6981300 8410000 5970600 0 0 0 0 0 7231 1058 6165 43736;43737;43738 27880;27881 27881 578 2 NTTIPTK Unmodified 773.42832 0.42831841 1074;1586;721 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;E9PNE6;B4E1Q1;A8K7Q2;Q96BE0;E9PS65;A0A024R6B5;P54652;B3KUS2;Karp_00050;B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;B7Z4T3;A1XP52 HEL-S-72p;HSPA8;HSPA2;HEL-S-124m;HSPA9 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Stress-70 protein, mitochondrial no no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 23.172 23.566 2 0.01578 4209 20181213_JW_Orientia_Karp_2_2 110.31 20.94 107310000 0 43885000 23227000 11697000 10298000 5565000 8545100 4093200 7232 1586;1074;721 6166 43739;43740;43741;43742;43743;43744;43745 27882 27882 1 NTTNVQNDEIEPVSK Unmodified 1686.8061 0.8060578 1362 Karp_01816 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 36.843 37.143 2 1.1443E-08 11385 20181213_JW_Orientia_Karp_1_2 210.64 146.26 32650000 7227400 14648000 7048000 0 0 0 3727100 0 7233 1362 6167 43746;43747;43748;43749 27883;27884;27885 27884 3 NTVELLVEDK Unmodified 1158.6132 0.61321864 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.596 49.846 2 4.0842E-25 18627 20181213_JW_Orientia_Karp_1_2 251.64 167.15 178650000 80914000 37363000 32444000 13873000 5969400 8082400 0 0 7234 1520 6168 43750;43751;43752;43753;43754;43755 27886;27887;27888;27889;27890;27891 27887 6 NTVLFPGLVLPILIGR Unmodified 1721.0604 0.060362418 1190 Karp_00705 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 77.895 77.864 2 6.8567E-09 36570 20181213_JW_Orientia_Karp_1_3 182.02 168.11 107230000 26787000 19873000 26407000 5168500 4602300 3888400 17609000 2896800 7235 1190 6169 43756;43757;43758;43759;43760;43761;43762;43763 27892;27893;27894;27895;27896;27897;27898;27899 27894 8 NTVPLVIGTTGLSK Unmodified 1398.8082 0.80823006 1441 Karp_02410 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 57.45 57.758 2 0.00030539 23636 20181213_JW_Orientia_Karp_1_3 164.92 135.18 109880000 46839000 22307000 17225000 8867800 6391800 7787000 467240 0 7236 1441 6170 43764;43765;43766;43767;43768;43769;43770 27900;27901;27902;27903;27904 27902 5 NTVSNVVGYLTGQNR Unmodified 1620.822 0.82198264 1428 Karp_02381 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 1 2 60.597 60.911 2;3 1.8883E-27 21123 20181213_JW_Orientia_Karp_3_1 231.74 175.94 212040000 50014000 6875900 52717000 13215000 34201000 27260000 3446400 24314000 7237 1428 6171 43771;43772;43773;43774;43775;43776;43777;43778;43779;43780;43781;43782 27905;27906;27907;27908 27907 4 NTVVLFVPQQEAWVVER Unmodified 2013.0684 0.068360922 1999 Q9UJZ1-2;Q9UJZ1 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 By MS/MS 1 71.624 71.722 2 0.0060468 32391 20181213_JW_Orientia_Karp_1_3 116.96 72.662 0 0 0 0 0 0 0 0 0 7238 1999 6172 43783 27909 27909 1 NVALLSQLYHSPAR Unmodified 1567.8471 0.84707518 1809 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 51.159 51.486 2 0.01522 17500 20181213_JW_Orientia_Karp_3_2 89.959 45.095 32499000 0 18220000 11369000 0 2122900 0 0 787280 7239 1809 6173 43784;43785;43786;43787 27910 27910 1 NVAMPTVYIVDDR Oxidation (M) 1507.7341 0.73407884 1213 Karp_00875 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 51.981 52.283 2 0.0013012 20653 20181213_JW_Orientia_Karp_1_1 131.17 93.828 62597000 19788000 11624000 10003000 6980000 7614300 5766000 0 820640 7240 1213 6174 43788;43789;43790;43791;43792;43793;43794 27911;27912;27913 27911 774 3 NVDDYLAFIK Unmodified 1196.6077 0.60773933 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.537 67.739 2 4.9361E-12 26347 20181213_JW_Orientia_Karp_3_2 212.03 126.87 205660000 76624000 16993000 38126000 0 34959000 9898100 509150 28552000 7241 1118 6175 43795;43796;43797;43798;43799;43800;43801 27914;27915;27916;27917;27918;27919;27920 27920 7 NVDGVNYASITR Unmodified 1307.647 0.64697839 1854 Q5U000;Q9UBR2 CTSZ Cathepsin Z yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 44.559 44.759 2 1.8188E-07 15560 20181213_JW_Orientia_Karp_1_2 187.58 129.72 68176000 20557000 27987000 12274000 0 0 7358000 0 0 7242 1854 6176 43802;43803;43804;43805;43806 27921;27922;27923;27924;27925;27926 27923 6 NVDLLSDMVQEHDEPILK Unmodified 2094.0303 0.030320436 221 F8W118;F8VV59;B7Z9C2;A0A024RBE6;B3KV44;H0YH88;H0YHC3;F8W020;F8VXI6;F8VUX1;F8VY35;F8W543;F8W0J6;F5H4R6;B7Z2V4;H0YIV4;A0A024RBB7;P55209-2;P55209 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 64.608 64.742 3 0.036699 28578 20181213_JW_Orientia_Karp_1_1 80.508 37.801 30512000 13768000 13018000 0 0 0 3725900 0 0 7243 221 6177 43807;43808;43809 27927 27927 1 NVDLSTFYQNR Unmodified 1355.647 0.64697839 668 B4DZ87;O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes no 0 0 0 0 By MS/MS 1 54.846 54.846 2 0.0032168 22376 20181213_JW_Orientia_Karp_1_1 155.11 110.13 0 0 0 0 0 0 0 0 0 7244 668 6178 43810 27928 27928 1 NVDQILSNVK Unmodified 1128.6139 0.61388734 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 48.096 48.397 2 7.5046E-09 18082 20181213_JW_Orientia_Karp_1_1 205.59 117.89 212940000 45084000 76583000 31063000 25630000 14754000 14463000 0 5365500 7245 1058 6179 43811;43812;43813;43814;43815;43816;43817;43818 27929;27930;27931;27932;27933;27934;27935 27929 7 NVEESLR Unmodified 845.4243 0.42429566 1399 Karp_02188 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 27.348 27.705 2 0.017389 6435 20181213_JW_Orientia_Karp_2_1 107.01 28.392 131720000 26052000 46656000 24648000 3687400 11436000 3483400 11747000 4011900 7246 1399 6180 43819;43820;43821;43822;43823;43824;43825;43826 27936;27937 27937 2 NVFDEAILAALEPPEPK Unmodified 1851.9618 0.96183016 199 A0A024RAE4;B7ZAY4;B4DMH5;B4E1U9;P60953;A0A024R9T1 CDC42;hCG_39634 Cell division control protein 42 homolog yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 75.478 75.489 2;3 9.2977E-05 34914 20181213_JW_Orientia_Karp_1_3 134.08 90.764 265640000 78180000 40009000 62231000 11614000 19730000 15498000 34298000 4082600 7247 199 6181 43827;43828;43829;43830;43831;43832;43833;43834;43835;43836;43837;43838;43839;43840 27938;27939;27940;27941;27942;27943;27944;27945 27940 7 NVFDTSNK Unmodified 923.43486 0.43486035 1164 Karp_00616 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 1 1 31.271 31.622 1;2 0.0070774 7981 20181213_JW_Orientia_Karp_2_1 113.18 63.753 360230000 89921000 125120000 72866000 12593000 0 6920500 36236000 16576000 7248 1164 6182 43841;43842;43843;43844;43845;43846;43847;43848 27946;27947;27948;27949;27950 27949 4 NVGENISDGLK Unmodified 1144.5724 0.57241646 1315 Karp_01271 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 39.475 39.725 2 0.00041894 11720 20181213_JW_Orientia_Karp_2_2 144.77 78.339 344790000 99446000 87656000 88386000 21198000 48103000 0 0 0 7249 1315 6183 43849;43850;43851;43852;43853 27951;27952;27953 27953 3 NVGHNIYILAHQLARHNKELQSMLK Oxidation (M);2 Deamidation (NQ) 2944.5341 0.53414424 881 Q59H91;E7EVP7;Q14643-4;Q14643-3;Q14643-8;Q14643-7;Q14643-5;Q14643-6;Q14643-2;Q14643 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 0 2 1 2 By MS/MS By matching By matching 1 1 1 73.644 73.66 3 0.035224 34050 20181213_JW_Orientia_Karp_1_1 43.611 11.635 32480000 13023000 8573400 10884000 0 0 0 0 0 7250 881 6184 43854;43855;43856 27954 27954 1695 0 NVGQFSGFPFEK Unmodified 1355.651 0.65100113 1655 P35659;B4DFG0;P35659-2;D6R9L5;D6RDA2 DEK Protein DEK yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 59.796 60.045 2 0.006244 25743 20181213_JW_Orientia_Karp_1_1 117.14 58.906 32406000 6268000 10962000 6996400 5000500 3179100 0 0 0 7251 1655 6185 43857;43858;43859;43860;43861 27955;27956 27955 2 NVGVEVFSLGIK Unmodified 1260.7078 0.70778773 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 64.842 65.024 2 1.4453E-07 28836 20181213_JW_Orientia_Karp_1_1 189.17 122.81 21229000 8655500 5961500 3971800 0 0 1760900 0 879260 7252 852 6186 43862;43863;43864;43865;43866 27957;27958;27959 27957 3 NVIFQPVAELK Unmodified 1256.7129 0.71287311 1760 Q01813;Q01813-2;Q49A78;B1APP8;O14943;Q8WTZ9;H0Y757 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 58.419 58.679 2 0.012192 24923 20181213_JW_Orientia_Karp_1_1 99.973 44.603 29522000 12524000 1844500 9617200 0 1537500 2673500 0 1325300 7253 1760 6187 43867;43868;43869;43870;43871;43872 27960 27960 1 NVIGLQMGTNR Oxidation (M) 1217.6187 0.61865515 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 37.79 38.101 2 6.303E-13 12370 20181213_JW_Orientia_Karp_1_1 215.72 172.85 1138800000 169610000 203110000 263610000 135140000 158380000 0 208940000 0 7254 1662 6188 43873;43874;43875;43876;43877;43878;43879;43880;43881;43882;43883 27961;27962;27963;27964;27965;27966;27967;27968;27969;27970 27961 1287 10 NVIGLQMGTNR Oxidation (M);Deamidation (NQ) 1218.6027 0.60267073 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 41.055 41.362 2 2.6559E-13 13561 20181213_JW_Orientia_Karp_3_1 223.31 150.7 238010000 42930000 52574000 35870000 37523000 5634500 18555000 42080000 2842400 7255 1662 6188 43884;43885;43886;43887;43888;43889;43890;43891;43892;43893;43894;43895;43896;43897;43898;43899 27971;27972;27973;27974;27975;27976;27977;27978;27979;27980;27981;27982;27983;27984;27985 27982 1112 1287 15 NVIGLQMGTNR Unmodified 1201.6237 0.62374052 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.878 47.198 2 1.4588E-13 16212 20181213_JW_Orientia_Karp_2_3 223.87 162.19 1156600000 227030000 291290000 244210000 135230000 65302000 82139000 3780600 107580000 7256 1662 6188 43900;43901;43902;43903;43904;43905;43906;43907 27986;27987;27988;27989;27990;27991;27992;27993 27991 8 NVIGLQMGTNR Deamidation (NQ) 1202.6078 0.60775611 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.596 51.898 2 0.00093554 20020 20181213_JW_Orientia_Karp_1_2 140.78 93.074 98728000 22356000 18223000 19664000 16167000 8042000 13046000 0 1230500 7257 1662 6188 43908;43909;43910;43911;43912;43913;43914 27994;27995;27996;27997;27998;27999;28000 27995 1112 7 NVLGHMQQGGAPSPFDR Oxidation (M) 1825.853 0.85296519 1760 Q01813;Q01813-2;Q49A78;B1APP8;O14943;Q8WTZ9;H0Y757 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 38.989 39.272 3 0.016955 13064 20181213_JW_Orientia_Karp_1_1 82.349 43.983 46381000 15418000 0 17552000 0 0 0 13411000 0 7258 1760 6189 43915;43916;43917 28001;28002;28003 28001 1375 3 NVLGHMQQGGAPSPFDR Unmodified 1809.8581 0.85805057 1760 Q01813;Q01813-2;Q49A78;B1APP8;O14943;Q8WTZ9;H0Y757 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.674 44.948 3 0.0048274 15659 20181213_JW_Orientia_Karp_1_2 89.506 40.881 25491000 0 13269000 12222000 0 0 0 0 0 7259 1760 6189 43918;43919;43920 28004;28005;28006;28007 28006 4 NVLVTLYER Unmodified 1105.6132 0.61315906 496 F5GY03;B4DRV4;B2RDL6;D3DQH8;P09486;Q6QE20;E5RK62 SPARC SPARC yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.591 52.858 2 0.0010447 19046 20181213_JW_Orientia_Karp_2_2 131.12 84.659 80966000 19980000 14244000 15578000 0 10018000 20942000 203350 0 7260 496 6190 43921;43922;43923;43924;43925;43926;43927 28008;28009;28010;28011;28012;28013 28012 6 NVNIDPDEYQGLAFGLGVER Unmodified 2205.0702 0.070211415 1344 Karp_01520 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 2 1 1 2 1 72.304 72.365 2;3 0.00048766 32896 20181213_JW_Orientia_Karp_1_3 116.04 82.289 172010000 37659000 37311000 46715000 0 8336200 10448000 25608000 5929800 7261 1344 6191 43928;43929;43930;43931;43932;43933;43934;43935;43936 28014;28015;28016 28016 3 NVNIQNFHISWK Unmodified 1498.7681 0.76809658 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;Q86TX4;G3V2N5;B4DRP5;G3V2W4;G3V2X9 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 53.825 54.074 3 0.026292 21952 20181213_JW_Orientia_Karp_1_1 61.213 24.685 32296000 17027000 0 9980900 1885400 0 3402100 0 0 7262 133 6192 43937;43938;43939;43940 28017 28017 1 NVQALEIELQSQLALK Unmodified 1796.0044 0.0043636815 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 2 2 69.501 69.663 2;3 1.537E-134 24879 20181213_JW_Orientia_Karp_3_1 336.8 275.38 526980000 68148000 38739000 14976000 17358000 106180000 64574000 185730000 31272000 + 7263 798 6193 43941;43942;43943;43944;43945;43946;43947;43948;43949;43950;43951;43952;43953;43954;43955;43956;43957 28018;28019;28020;28021;28022;28023;28024;28025;28026;28027;28028;28029;28030 28027 13 NVQDAIADAEQR Unmodified 1328.6321 0.6320566 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 42.099 42.424 2 2.2828E-16 13672 20181213_JW_Orientia_Karp_3_1 211.63 149.87 550640000 137860000 125650000 139740000 41613000 26061000 31824000 47890000 0 + 7264 804;1657 6194 43958;43959;43960;43961;43962;43963;43964;43965;43966;43967 28031;28032;28033;28034;28035;28036;28037 28037 7 NVQGIIEILK Unmodified 1125.6758 0.67575932 635 B4DSR0;E5KNY5;P42704;B8ZZ38 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 0 0 0 0 By MS/MS 1 61.486 61.684 2 0.00032108 26106 20181213_JW_Orientia_Karp_1_3 140.83 103.68 1756500 0 0 1756500 0 0 0 0 0 7265 635 6195 43968 28038 28038 1 NVQVYNPTPNSLDVR Unmodified 1714.8638 0.86384745 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 50.61 50.937 2 2.7897E-05 19720 20181213_JW_Orientia_Karp_1_1 161.25 115.1 49657000 12809000 17426000 9155300 0 2464400 0 6407000 1395100 7266 852 6196 43969;43970;43971;43972;43973;43974 28039;28040;28041;28042;28043 28039 5 NVSTGDVNVEMNAAPGVDLTQLLNNMR 2 Oxidation (M) 2903.3753 0.37531992 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.352 70.474 3 1.1201E-10 28098 20181213_JW_Orientia_Karp_2_2 137.04 98.92 1361500000 293700000 131850000 121170000 95349000 269030000 155310000 295110000 0 + 7267 798 6197 43975;43976;43977;43978;43979;43980;43981 28044;28045;28046;28047;28048;28049;28050;28051;28052 28048 463;464 9 NVSTGDVNVEMNAAPGVDLTQLLNNMR Oxidation (M) 2887.3804 0.3804053 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 73.264 73.309 3 4.0874E-14 29455 20181213_JW_Orientia_Karp_3_2 159.76 114.39 852100000 114940000 88860000 101370000 101650000 124320000 65137000 159170000 96649000 + 7268 798 6197 43982;43983;43984;43985;43986;43987;43988;43989;43990;43991 28053;28054;28055;28056;28057;28058;28059 28059 463;464 7 NVSTGDVNVEMNAAPGVDLTQLLNNMR Unmodified 2871.3855 0.38549067 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 2 2 75.035 75.061 3 4.8746E-14 34880 20181213_JW_Orientia_Karp_1_2 152.03 115.52 164850000 37295000 15758000 52591000 9659300 22604000 24194000 0 2752100 + 7269 798 6197 43992;43993;43994;43995;43996;43997;43998;43999;44000;44001 28060;28061;28062;28063;28064;28065;28066 28061 7 NVSTGDVNVEMNAAPGVDLTQLLNNMR Oxidation (M);Deamidation (NQ) 2888.3644 0.36442088 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 1 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 73.35 73.388 3 0.0017816 33600 20181213_JW_Orientia_Karp_1_3 77.838 38.896 107810000 39077000 18089000 20194000 30450000 0 0 0 0 + 7270 798 6197 44002;44003;44004;44005 28067;28068 28068 280;281;282;1652 463;464 2 NVSTGDVNVEMNAAPGVDLTQLLNNMR Deamidation (NQ) 2872.3695 0.36950626 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 0 0 By matching By MS/MS By matching By matching 1 1 1 1 75.378 75.403 3 0.0030108 30808 20181213_JW_Orientia_Karp_2_1 71.143 47.251 24971000 0 13090000 0 3129900 4108700 0 4641700 0 + 7271 798 6197 44006;44007;44008;44009 28069 28069 280;281;282;1652 1 NVSTGDVNVEMNAAPGVDLTQLLNNMR 2 Oxidation (M);Deamidation (NQ) 2904.3593 0.3593355 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 2 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 1 71.79 71.876 2;3 1.4808E-07 28817 20181213_JW_Orientia_Karp_3_2 120.63 60.494 343440000 88355000 11370000 63591000 21570000 6583200 44342000 86902000 20730000 + 7272 798 6197 44010;44011;44012;44013;44014;44015;44016;44017;44018;44019 28070;28071;28072;28073;28074 28073 280;281;282;1652 463;464 4 NVTELNEPLSNEER Unmodified 1642.7798 0.77984305 556 B4DE78;P61981;B3KNB4;B4DHC4 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.066 44.376 2 3.4881E-106 15121 20181213_JW_Orientia_Karp_1_3 331.54 223.99 115330000 30411000 34213000 33516000 0 5105800 0 8507200 3578600 7273 556 6198 44020;44021;44022;44023;44024;44025;44026 28075;28076;28077;28078;28079;28080;28081 28077 7 NVTETLQQFSQEILQQSK Unmodified 2120.075 0.074962442 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 72.712 72.773 2;3 1.7588E-164 33486 20181213_JW_Orientia_Karp_1_1 354.93 280.54 933250000 202470000 136000000 189860000 23096000 91943000 78830000 189350000 21690000 7274 1266 6199 44027;44028;44029;44030;44031;44032;44033;44034;44035;44036;44037;44038;44039;44040 28082;28083;28084;28085;28086;28087;28088;28089;28090;28091;28092;28093;28094;28095 28082 13 NVTHIYEINLLTR Unmodified 1584.8624 0.86239089 1065 Karp_00013 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 54.058 54.308 3 0.00090083 21387 20181213_JW_Orientia_Karp_1_3 126.09 46.393 47396000 14960000 0 6087200 5984000 8450900 11913000 0 0 7275 1065 6200 44041;44042;44043;44044;44045 28096;28097;28098 28096 3 NVVDLELVLK Unmodified 1140.6754 0.67542497 1423 Karp_02309 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 66.328 66.493 2 0.0064032 29328 20181213_JW_Orientia_Karp_1_2 123.86 73.16 21810000 10532000 0 5072900 0 3574200 0 0 2630400 7276 1423 6201 44046;44047;44048;44049;44050;44051 28099;28100;28101;28102 28100 4 NVVLDPKDDEMIAIVPK Unmodified 1895.0074 0.0074001489 1427 Karp_02373 yes yes 0 0 0 1 By MS/MS By matching 1 1 61.228 61.502 3 0.037703 26343 20181213_JW_Orientia_Karp_1_2 81.632 59.026 6988900 0 2790600 4198300 0 0 0 0 0 7277 1427 6202 44052;44053 28103 28103 0 NVVLPTETEVAPAK Unmodified 1466.7981 0.7980593 879 E7EVA0;P27816;P27816-2;P27816-6;B4DM10;A0A024R2V2;A0A024R2S1;Q6NX68;Q05D06 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 49.565 49.91 2 0.0066972 17623 20181213_JW_Orientia_Karp_2_3 103.43 72.633 171560000 23330000 30319000 24363000 39186000 18548000 26560000 66890 9190900 7278 879 6203 44054;44055;44056;44057;44058;44059;44060;44061 28104;28105;28106;28107;28108 28106 5 NVYPFDWVIMNMVQNK Oxidation (M);2 Deamidation (NQ) 2014.9169 0.91687058 504 B2RUU3;Q14185 DOCK1 Dedicator of cytokinesis protein 1 yes no 0 2 1 0 By MS/MS 1 70.966 70.966 2 0.040911 32296 20181213_JW_Orientia_Karp_1_1 83.182 23.102 9050100 9050100 0 0 0 0 0 0 0 7279 504 6204 44062 28109 28109 1482 1 NWESVLYANK Unmodified 1222.5982 0.59823728 1236 Karp_00903 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 53.409 53.77 2 2.2061E-18 19475 20181213_JW_Orientia_Karp_2_2 239.6 191.73 222130000 93119000 91395000 0 17608000 19834000 0 175980 0 7280 1236 6205 44063;44064;44065;44066;44067 28110;28111;28112;28113 28113 4 NWQESASVLLNSQEK Unmodified 1731.8428 0.84277766 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 55.649 55.965 2 7.0509E-06 23165 20181213_JW_Orientia_Karp_1_1 164.92 115.84 115540000 23864000 31838000 27690000 11221000 13420000 7034600 0 469430 7281 1428 6206 44068;44069;44070;44071;44072;44073;44074 28114 28114 1 NWQESASVLLNSQEK Deamidation (NQ) 1732.8268 0.82679325 1428 Karp_02381 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 55.989 56.348 2 4.3301E-07 23327 20181213_JW_Orientia_Karp_1_1 179.59 114.75 44899000 18358000 0 7749700 7055700 4026000 6504800 971270 233790 7282 1428 6206 44075;44076;44077;44078;44079;44080;44081 28115;28116 28115 948 2 NWRDPDQTDGLGLSYLSSHIANVER Unmodified 2842.3634 0.36343332 716 B7Z2X4;B7Z992;P06396-2;B7Z9A0;B7Z6N2;P06396-4;P06396-3;P06396;B7Z4U6;Q5T0H9;B3KS49 GSN Gelsolin yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 60.235 60.57 4 0.00088549 25726 20181213_JW_Orientia_Karp_1_2 84.993 70.184 99710000 0 60758000 18281000 8396900 3980300 6106600 0 2186200 7283 716 6207 44082;44083;44084;44085;44086;44087 28117;28118;28119 28117 3 NWSSLIK Unmodified 846.45995 0.45995289 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 47.167 47.488 2 0.029015 15168 20181213_JW_Orientia_Karp_3_2 90.777 5.8611 277090000 151380000 87859000 24157000 8974000 0 0 0 4722500 7284 1219 6208 44088;44089;44090;44091;44092;44093 28120;28121;28122;28123 28123 4 NWSSLIK Deamidation (NQ) 847.44397 0.44396847 1219 Karp_00886 yes yes 0 1 0 0 By MS/MS 1 65.081 65.081 2 0.028858 28794 20181213_JW_Orientia_Karp_1_1 110.31 26.557 11907000 11907000 0 0 0 0 0 0 0 7285 1219 6208 44094 28124 28124 623 1 NWSSLIKPTK Unmodified 1172.6554 0.65535823 1219 Karp_00886 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 41.112 41.405 2 0.011857 13690 20181213_JW_Orientia_Karp_1_2 133.99 62.614 162930000 25011000 43507000 35414000 12441000 17898000 7575800 21087000 0 7286 1219 6209 44095;44096;44097;44098;44099;44100;44101;44102 28125;28126;28127;28128 28125 4 NYDEIDSAPEEK Unmodified 1408.5994 0.59941907 1244 Karp_00911 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.438 37.705 2 1.1691E-16 12084 20181213_JW_Orientia_Karp_1_1 218.55 165.47 100630000 34020000 27945000 28738000 5643200 2206200 2072200 0 0 7287 1244 6210 44103;44104;44105;44106;44107;44108 28129;28130;28131;28132;28133;28134 28129 6 NYDIGAALDTIQYSK Unmodified 1670.8152 0.81516593 693 B4E3V2;Q13501-2;Q13501;Q13502 SQSTM1 Sequestosome-1 yes no 0 0 0 0 By MS/MS By matching 1 1 63.413 63.64 2 1.2723E-06 27235 20181213_JW_Orientia_Karp_1_3 177.36 123.79 9376100 0 0 8544800 831340 0 0 0 0 7288 693 6211 44109;44110 28135 28135 1 NYDNMLK 2 Deamidation (NQ) 898.37423 0.37423392 280 A1L190 SYCE3 Synaptonemal complex central element protein 3 yes yes 0 2 0 0 By MS/MS By MS/MS 1 1 47.883 48.058 2 0.01985 17486 20181213_JW_Orientia_Karp_1_2 147.34 9.0934 79053000 33291000 45763000 0 0 0 0 0 0 7289 280 6212 44111;44112 28136;28137 28137 110;111 2 NYDNMLK Oxidation (M);2 Deamidation (NQ) 914.36915 0.36914855 280 A1L190 SYCE3 Synaptonemal complex central element protein 3 yes yes 0 2 1 0 By MS/MS 1 35.02 35.37 2 0.032195 10507 20181213_JW_Orientia_Karp_1_2 85.265 9.2304 62138000 0 62138000 0 0 0 0 0 0 7290 280 6212 44113 28138 28138 110;111 1 NYGFVHIEDK Unmodified 1220.5826 0.58258722 402 E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;E9PB51;A8K9U0;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04;Q9BWF3 RBM4B;RBM4 RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS By matching 1 1 40.901 41.027 2 0.030806 13907 20181213_JW_Orientia_Karp_1_1 77.533 31.532 6538800 5757700 0 0 0 0 781080 0 0 7291 402 6213 44114;44115 28139 28139 1 NYGMSEWR Unmodified 1041.4338 0.43381449 1995 Q9P2D7-4;Q9P2D7;Q9P2D7-5;Q9P2D7-2 DNAH1 Dynein heavy chain 1, axonemal yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 1 3 2 1 15.387 15.723 2 0.0077475 2569 20181213_JW_Orientia_Karp_1_2 111.04 37.419 406070000 138010000 115370000 3004000 73552000 534700 38184000 36399000 1007600 7292 1995 6214 44116;44117;44118;44119;44120;44121;44122;44123;44124;44125;44126;44127;44128;44129 28140;28141;28142;28143;28144;28145 28141 6 NYIQGINLVQAK Unmodified 1359.751 0.75104953 1702 P52815;Q96Q74;B4DLN1 MRPL12;MRPL7/L12 39S ribosomal protein L12, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 53.496 53.854 2 2.6033E-40 21322 20181213_JW_Orientia_Karp_1_2 274.42 245.25 212730000 52570000 36727000 40601000 29108000 24681000 25575000 1227900 2237900 7293 1702 6215 44130;44131;44132;44133;44134;44135;44136;44137 28146;28147;28148;28149;28150;28151 28147 6 NYIQNFNSTEAVNDLK Unmodified 1868.8905 0.89045614 1449 Karp_02529 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 53.627 53.901 2 2.8599E-22 21349 20181213_JW_Orientia_Karp_1_2 225.79 137.2 64072000 19662000 21478000 16471000 6461200 0 0 0 0 7294 1449 6216 44138;44139;44140;44141 28152 28152 1 NYIQNFNSTEAVNDLK 3 Deamidation (NQ) 1871.8425 0.84250289 1449 Karp_02529 yes yes 0 3 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 56.558 56.91 2 0.034056 23090 20181213_JW_Orientia_Karp_1_2 63.537 35.153 51001000 1832200 18690000 0 19816000 0 9184900 0 1478300 7295 1449 6216 44142;44143;44144;44145;44146 28153 28153 975;976;1878 0 NYIQNFNSTEAVNDLK 2 Deamidation (NQ) 1870.8585 0.85848731 1449 Karp_02529 yes yes 0 2 0 0 By MS/MS 1 55.279 55.478 2 0.0068004 22114 20181213_JW_Orientia_Karp_1_3 103.76 43.506 0 0 0 0 0 0 0 0 0 7296 1449 6216 44147 28154 28154 975;976;1878 1 NYIQNFNSTEAVNDLK Deamidation (NQ) 1869.8745 0.87447172 1449 Karp_02529 yes yes 0 1 0 0 By MS/MS 1 56.264 56.463 2 0.006168 22758 20181213_JW_Orientia_Karp_1_3 113.37 59.8 0 0 0 0 0 0 0 0 0 7297 1449 6216 44148 28155 28155 975;976;1878 1 NYITMDELR Oxidation (M) 1169.5387 0.53867349 133 A0A024R694;P12814;P12814-3;P12814-2;H9KV75;B7Z565;B4DFY0;B3KUX9;A1L0V1;H0YJW3 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1 1 1 41.728 42.048 2 0.0015015 13796 20181213_JW_Orientia_Karp_1_3 120.27 63.726 116250000 31026000 37812000 25454000 1683100 1812900 1457400 15723000 1281200 7298 133 6217 44149;44150;44151;44152;44153;44154;44155;44156;44157 28156;28157;28158;28159;28160;28161 28158 120 6 NYKPGQQGNSSSVSK Unmodified 1579.759 0.75904803 1131 Karp_00376 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 18.094 18.323 3 0.0039045 3202 20181213_JW_Orientia_Karp_1_3 113.54 72.298 19603000 2863000 6390700 8678600 1089600 0 0 581300 0 7299 1131 6218 44158;44159;44160;44161;44162 28162;28163;28164 28164 3 NYKPGQQGNSSSVSK Deamidation (NQ) 1580.7431 0.74306362 1131 Karp_00376 yes yes 0 1 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 2 2 2 1 21.108 21.455 3 0.0036762 4285 20181213_JW_Orientia_Karp_1_3 122.66 84.869 32087000 4288800 8267000 5460000 3302700 2664900 3840600 2813200 1449600 7300 1131 6218 44163;44164;44165;44166;44167;44168;44169;44170;44171;44172;44173;44174 28165;28166;28167;28168 28166 525 4 NYKPGQQGNSSSVSKPSDYSK Deamidation (NQ) 2258.0451 0.045118877 1131 Karp_00376 yes yes 0 1 0 2 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 26.577 26.885 4 0.042013 6954 20181213_JW_Orientia_Karp_1_1 48.51 22.686 165180000 42263000 45206000 35527000 11225000 772450 1079700 29103000 0 7301 1131 6219 44175;44176;44177;44178;44179;44180;44181 28169 28169 525 1 NYLLLEEEIK Unmodified 1262.6758 0.6758189 1421 Karp_02305 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 59.298 59.618 2 2.1952E-06 25553 20181213_JW_Orientia_Karp_1_1 179.1 92.268 71710000 35083000 4129200 11280000 3717800 6541200 8720700 113270 2124900 7302 1421 6220 44182;44183;44184;44185;44186;44187;44188;44189 28170;28171;28172;28173;28174;28175;28176;28177;28178 28170 9 NYMNWLK Unmodified 967.45857 0.45857268 1328 Karp_01362 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 52.181 52.431 2 0.034375 20443 20181213_JW_Orientia_Karp_1_2 86.512 35.476 34760000 19088000 4960300 6956500 3003300 751130 0 0 0 7303 1328 6221 44190;44191;44192;44193;44194 28179 28179 1 NYMTNFHSK Oxidation (M) 1156.4971 0.49714303 1357 Karp_01763 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 21.187 21.466 2 0.024613 4498 20181213_JW_Orientia_Karp_1_1 78.264 30.521 4589900 594510 1181200 904870 543280 361930 392900 611200 0 7304 1357 6222 44195;44196;44197;44198;44199;44200;44201 28180;28181;28182;28183 28180 931 4 NYNLAIK Unmodified 834.45995 0.45995289 1340;1084 Karp_01512;Karp_00147 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 38.799 39.124 2 0.010412 12953 20181213_JW_Orientia_Karp_1_1 144.29 0 35846000 15800000 12569000 0 1115200 2197300 2010800 2153200 0 7305 1340;1084 6223 44202;44203;44204;44205;44206;44207 28184;28185;28186;28187 28184 4 NYQQNYQNSESGEK Unmodified 1687.7074 0.70740639 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 23.738 24.09 2 1.6358E-11 4924 20181213_JW_Orientia_Karp_2_1 196.15 145.8 12586000 1511100 2222300 0 2629300 1108400 2657300 1740500 716850 7306 1745 6224 44208;44209;44210;44211;44212;44213;44214 28188;28189;28190;28191;28192 28189 5 NYQQNYQNSESGEK Deamidation (NQ) 1688.6914 0.69142198 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 25.237 25.629 2 0.0031648 5613 20181213_JW_Orientia_Karp_2_1 128.21 57.662 4883900 0 0 441860 1046200 2592400 470690 0 332740 7307 1745 6224 44215;44216;44217;44218;44219 28193;28194 28193 1146 2 NYSPYYNTIDDLK Unmodified 1604.7359 0.73585297 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 3 52.639 53 2 2.3093E-34 19450 20181213_JW_Orientia_Karp_2_1 248.19 189.76 2128000000 418150000 409930000 335170000 298550000 374410000 271080000 0 20690000 + 7308 1653 6225 44220;44221;44222;44223;44224;44225;44226;44227;44228;44229;44230;44231 28195;28196;28197;28198;28199;28200;28201;28202;28203 28199 9 NYSPYYNTIDDLK Deamidation (NQ) 1605.7199 0.71986856 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 3 3 3 1 3 58.205 58.5 2 1.188E-11 20164 20181213_JW_Orientia_Karp_2_2 208.08 149.38 523220000 124500000 80795000 136040000 42177000 68267000 54701000 4696900 12047000 + 7309 1653 6225 44232;44233;44234;44235;44236;44237;44238;44239;44240;44241;44242;44243;44244;44245;44246;44247;44248;44249;44250;44251;44252;44253 28204;28205;28206;28207;28208;28209;28210;28211;28212;28213;28214;28215;28216;28217 28212 1101;1102 14 NYSPYYNTIDDLKDQIVDLTVGNNK Unmodified 2901.4032 0.40323245 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 72.641 72.713 3 1.6393E-06 29693 20181213_JW_Orientia_Karp_2_1 130.19 110.95 823430000 43082000 0 0 129510000 142870000 0 233060000 274900000 + 7310 1653 6226 44254;44255;44256;44257;44258 28218;28219;28220;28221;28222 28218 5 NYYEQWGK Unmodified 1086.4771 0.47705951 191 A0A024RA27;A0A024RA61;P22626-2;P22626;I6L957 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.789 40.096 2 0.0023426 12251 20181213_JW_Orientia_Karp_2_1 160.63 82.89 245100000 72344000 46408000 41637000 28498000 13971000 6964000 35273000 0 7311 191 6227 44259;44260;44261;44262;44263;44264;44265 28223;28224;28225;28226;28227;28228;28229;28230 28227 8 PAAATVTK Unmodified 757.4334 0.43340378 1606 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 17.867 18.192 2 0.0050335 3164 20181213_JW_Orientia_Karp_1_3 122.13 22.753 4269100 0 0 3977200 0 0 0 291920 0 7312 1606 6228 44266;44267;44268;44269 28231;28232;28233;28234 28233 4 PAADIPQSTQHSSPATSTGTGQQQEPQK Unmodified 2876.3537 0.3536565 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 32.01 32.337 3 4.1033E-11 8922 20181213_JW_Orientia_Karp_1_3 196.37 168.22 734550000 220280000 310900000 112220000 48451000 14742000 0 0 27949000 7313 1266 6229 44270;44271;44272;44273;44274;44275 28235;28236;28237;28238;28239;28240;28241 28238 7 PAADIPQSTQHSSPATSTGTGQQQEPQK Deamidation (NQ) 2877.3377 0.33767208 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS 1 32.618 32.968 3 0.032139 9345 20181213_JW_Orientia_Karp_1_2 59.912 35.016 0 0 0 0 0 0 0 0 0 7314 1266 6229 44276 28242 28242 1828 1 PAAGGTAPLPPWK Unmodified 1261.6819 0.68190733 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;B4DQR8;H7C3D3;H7C3R3 ZYX Zyxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 50.363 50.67 2 6.6894E-05 18956 20181213_JW_Orientia_Karp_1_3 167.93 140.11 99231000 23781000 16149000 12271000 19884000 6517100 15628000 5001100 0 7315 1812 6230 44277;44278;44279;44280;44281;44282;44283;44284 28243;28244;28245;28246;28247;28248;28249 28245 7 PAANFDAIR Unmodified 973.49813 0.49812931 453 B4DT77;B4DWU2;B4DHY4;Q53HM8;B2R7L2;B2R657;P20073-2;P20073 ANXA7 Annexin;Annexin A7 yes no 0 0 0 0 By MS/MS 1 40.332 40.682 2 0.041937 13328 20181213_JW_Orientia_Karp_1_2 71.692 26.012 6983500 0 6983500 0 0 0 0 0 0 7316 453 6231 44285 28250 28250 1 PAAPPAPGPGQLTLR Unmodified 1441.8041 0.80414773 60 A0A024R1Z6;Q99536;K7ERT7 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 49.773 50.052 2;3 0.025084 18763 20181213_JW_Orientia_Karp_1_2 58.32 32.204 189090000 55226000 61199000 55938000 4370200 0 4935900 0 7419800 7317 60 6232 44286;44287;44288;44289;44290;44291;44292;44293;44294 28251;28252;28253;28254 28252 4 PAAVAAENEEIGSHIK Unmodified 1634.8264 0.82639932 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 35.908 36.198 3 0.003503 10550 20181213_JW_Orientia_Karp_3_1 105.63 75.453 129400000 44076000 44510000 29480000 0 1251700 0 10080000 0 7318 2016 6233 44295;44296;44297;44298;44299;44300 28255;28256;28257;28258 28257 4 PAEAPTAPSPAQTLENSEPAPVSQLQSR Unmodified 2872.4203 0.4202795 168 K7EJ51;Q1WWK5;A0A024R8Q0;A0A024R8V0;Q9UHD8-3;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ER14;K7EJL9 SEPT9 Septin-9 yes no 0 0 0 0 By MS/MS By matching 1 1 57.559 57.964 3 0.0010522 23758 20181213_JW_Orientia_Karp_1_3 69.292 43.488 5604600 0 0 4942700 0 0 0 0 661890 7319 168 6234 44301;44302 28259 28259 1 PAEFTIDTK Unmodified 1020.5128 0.51277632 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 42.534 42.864 2 0.00082427 14506 20181213_JW_Orientia_Karp_1_2 134.26 66.036 59283000 20010000 17039000 12550000 2137100 0 0 7546900 0 7320 1520 6235 44303;44304;44305;44306;44307 28260;28261;28262 28261 3 PAEKPAETPVATSPTATDSTSGDSSR Unmodified 2559.1936 0.19363361 557 B7ZA74;B7Z4W4;B4DEA3;P54727-2;P54727;Q53F10;H0Y579 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 33.476 33.991 3 0.0015226 8872 20181213_JW_Orientia_Karp_3_2 83.465 55.071 17313000 0 0 0 5844000 4086100 0 5269500 2113100 7321 557 6236 44308;44309;44310;44311 28263;28264;28265;28266 28266 4 PAEQTPLTALHVASLIK Unmodified 1788.0145 0.014534437 1538 V9HW83;V9HVX6;P00352;B4DXX3;B4DDF8;Q5SYQ9;Q5SYQ8;Q59EJ0 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 59.912 60.112 3 0.017301 25431 20181213_JW_Orientia_Karp_1_2 66.606 47.773 28227000 9799100 7998800 5655900 0 4772900 0 0 0 7322 1538 6237 44312;44313;44314;44315 28267 28267 1 PAETPVATSPTATDSTSGDSSR Unmodified 2133.9662 0.96619985 557 B7ZA74;B7Z4W4;B4DEA3;P54727-2;P54727;Q53F10;H0Y579 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 37.36 37.771 2 0.012733 11053 20181213_JW_Orientia_Karp_2_1 82.578 34.065 7611700 0 2999700 0 1738100 666800 474220 1732900 0 7323 557 6238 44316;44317;44318;44319;44320;44321 28268;28269 28269 2 PAFFAEK Unmodified 808.41194 0.41194006 1548 Q5TZZ9;P04083;B5BU38;B4DL19 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 2 1 1 40.818 41.131 2 0.011563 13533 20181213_JW_Orientia_Karp_1_2 119.57 73.215 71792000 17270000 13683000 13970000 8628700 3631400 0 13841000 768340 7324 1548 6239 44322;44323;44324;44325;44326;44327;44328;44329;44330 28270;28271;28272;28273;28274;28275 28271 6 PAFGQQHQQQPK Unmodified 1392.6898 0.68984625 1686 P49750-3;P49750;P49750-4;H0YIQ2;Q8NF45 YLPM1;FLJ00353 YLP motif-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 19.823 19.948 3 0.023567 4031 20181213_JW_Orientia_Karp_1_1 64.103 39.25 1370100 910200 0 0 0 0 459880 0 0 7325 1686 6240 44331;44332 28276;28277 28276 2 PAGPPGILALLDEECWFPK Unmodified 2109.0605 0.060498352 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 76.863 76.879 2 0.00025752 36293 20181213_JW_Orientia_Karp_1_2 126.1 89.813 21341000 8624900 8324900 4390700 0 0 0 0 0 7326 47 6241 44333;44334;44335 28278 28278 1 PAGPSVSELIVQAASSSK Unmodified 1726.9101 0.91012895 1763 Q02539 HIST1H1A Histone H1.1 yes yes 0 0 0 0 By MS/MS 1 62.418 62.418 2 0.0055299 27173 20181213_JW_Orientia_Karp_1_1 131.86 107.01 0 0 0 0 0 0 0 0 0 7327 1763 6242 44336 28279 28279 1 PAHSQNQSNFSSYSSK Unmodified 1767.7812 0.78124004 423 Q68DX9;G5E9E7;A9CQZ8;G3V1L9;Q07157-2;Q07157;B4DZK4 DKFZp686M05161;TJP1 Tight junction protein ZO-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 22.597 22.949 3 0.038436 5243 20181213_JW_Orientia_Karp_1_1 46.621 18.972 5461300 1646400 1257600 0 840340 457390 478300 415110 366220 7328 423 6243 44337;44338;44339;44340;44341;44342;44343 28280 28280 1 PAIISITEGNVFSHSEAQTASQDIHGATPPQTVVER Unmodified 3786.8813 0.88129502 1201 Karp_00820 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 3 3 3 2 2 56.916 57.235 3;4;5 4.363E-09 23364 20181213_JW_Orientia_Karp_1_3 95.108 79.828 2217800000 88540000 135660000 714910000 274360000 400790000 336180000 25115000 242200000 7329 1201 6244 44344;44345;44346;44347;44348;44349;44350;44351;44352;44353;44354;44355;44356;44357;44358;44359;44360;44361;44362;44363;44364;44365 28281;28282;28283;28284;28285;28286;28287;28288;28289 28285 9 PALLHSTFFPALQGAQTK Unmodified 1926.0363 0.036332512 138 A0A024R6K8;P23381;P23381-2;H0YJP3 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 58.396 58.572 3 2.7711E-12 24119 20181213_JW_Orientia_Karp_1_3 183.31 138.71 526690000 299220000 0 143120000 0 29044000 55309000 0 0 7330 138 6245 44366;44367;44368;44369 28290;28291;28292;28293;28294 28292 5 PAPLATEVFDEK Unmodified 1315.666 0.66598249 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 53.585 53.942 2 0.001446 19558 20181213_JW_Orientia_Karp_2_2 128.51 90.427 204300000 89198000 20048000 37858000 17416000 13189000 24716000 777270 1093200 7331 1764 6246 44370;44371;44372;44373;44374;44375;44376;44377 28295;28296;28297;28298;28299;28300;28301 28299 7 PAPVAQPPAAAPPSAVGSSAAAPR Unmodified 2137.128 0.12800107 1848 Q9Y6H1;Q5T1J5 CHCHD2;CHCHD2P9 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.44 47.785 3 0.00094448 17311 20181213_JW_Orientia_Karp_1_2 92.289 66.732 124990000 13753000 27672000 21220000 20542000 10165000 9009000 2135600 20495000 7332 1848 6247 44378;44379;44380;44381;44382;44383;44384;44385 28302;28303;28304;28305;28306;28307;28308;28309;28310 28303 9 PAQGVVTTLENVSPPRR Unmodified 1819.9904 0.99044495 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 45.757 45.94 3 0.033843 15966 20181213_JW_Orientia_Karp_1_3 55.755 41.18 32948000 10841000 14443000 7663500 0 0 0 0 0 7333 85 6248 44386;44387;44388 28311;28312;28313 28313 3 PASGPIRPIVR Unmodified 1161.6982 0.6982261 357 Q6NZ55;A8K4C8;P26373;J3QSB4;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 32.698 33.019 3 0.0050339 8817 20181213_JW_Orientia_Karp_2_3 106.2 83.619 541110000 169200000 130620000 157380000 24543000 9164100 7745200 42466000 0 7334 357 6249 44389;44390;44391;44392;44393;44394;44395 28314;28315;28316;28317 28316 4 PASLYQSSIDR Unmodified 1235.6146 0.61461563 735 H7BZK1;B7Z997;O94875-9;O94875-7;O94875;O94875-11;B7Z3D7 SORBS2 Sorbin and SH3 domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 39.253 39.579 2 0.0067885 13148 20181213_JW_Orientia_Karp_1_1 101.39 64.329 14178000 11564000 0 0 0 0 0 2614300 0 7335 735 6250 44396;44397;44398 28318;28319 28318 2 PATFRPASSPAVAEAHESTEAR Unmodified 2281.1087 0.10872219 1115 Karp_00303 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 33.309 33.643 4 0.00026757 9172 20181213_JW_Orientia_Karp_2_3 109.12 80.236 640230000 142030000 168440000 148670000 83609000 0 34524000 62953000 0 7336 1115 6251 44399;44400;44401;44402;44403;44404 28320;28321;28322;28323;28324;28325 28324 6 PATFTVNTK Unmodified 977.5182 0.51819605 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;H0Y5F3 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 34.801 34.984 2 0.0038956 10289 20181213_JW_Orientia_Karp_1_2 109.48 78.249 48037000 16734000 14575000 16728000 0 0 0 0 0 7337 1615 6252 44405;44406;44407 28326;28327 28326 2 PAVEASTGGEATQETGK Unmodified 1631.7639 0.76385864 106 A0A024R542;Q9C0C2;E9PKK0;E9PKE7 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 28.503 28.833 2 0.0022686 7257 20181213_JW_Orientia_Karp_1_3 109.99 86.005 11303000 5210000 0 3264500 951260 756410 0 1121200 0 7338 106 6253 44408;44409;44410;44411;44412 28328;28329 28329 2 PAVPLLNSNNEK Deamidation (NQ) 1295.6721 0.67213051 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;B7Z8U8 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 1 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.149 51.399 2 0.033841 19531 20181213_JW_Orientia_Karp_1_3 84.198 56.455 47681000 19707000 10157000 6758600 4306100 2414100 4338400 0 0 7339 274 6254 44413;44414;44415;44416;44417;44418 28330 28330 0 PAVTTLVVK Unmodified 926.58007 0.58006802 313 A6NEM2;P51610-2;P51610;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By matching 1 1 43.693 43.868 2 0.0049515 15521 20181213_JW_Orientia_Karp_1_1 104.44 59.102 7908600 4366100 3542500 0 0 0 0 0 0 7340 313 6255 44419;44420 28331 28331 1 PAVVAPAPVVEAVSTPSAAFPSDATAENVK Unmodified 2891.4917 0.49165353 922 F4ZW66;Q12906-7;Q12906-4;Q12906-6 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 68.99 69.166 3 2.7246E-10 31116 20181213_JW_Orientia_Karp_1_2 121.84 77.425 81704000 19387000 30017000 14579000 1543100 0 0 12632000 3545800 7341 922 6256 44421;44422;44423;44424;44425;44426 28332;28333;28334 28333 3 PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK Unmodified 3287.7289 0.72892369 147 A0A024R7C7;Q12906;F4ZW64;A8K590;Q12906-5;Q12906-2;Q12906-3;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By matching By MS/MS 1 1 72.47 72.519 3 4.5847E-09 33027 20181213_JW_Orientia_Karp_1_3 99.29 82.757 37182000 17676000 0 19506000 0 0 0 0 0 7342 147 6257 44427;44428 28335 28335 1 PAVVTVGDFPEEDYGLDEI Unmodified 2063.9575 0.95753265 1954 Q99426-2;Q99426 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 76.259 76.283 2 4.5747E-07 35782 20181213_JW_Orientia_Karp_1_1 157.03 129.35 30110000 13502000 5092900 9596000 1919200 0 0 0 0 7343 1954 6258 44429;44430;44431;44432 28336;28337;28338 28336 3 PAYHSSLMDPDTK Unmodified 1460.6606 0.66057954 445 B4DM63;B2R4D5;O15145;Q2LE71;C9JZD1 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 34.139 34.414 3 0.0090014 10115 20181213_JW_Orientia_Karp_1_2 83.204 45.679 64592000 12119000 30160000 20564000 1749100 0 0 0 0 7344 445 6259 44433;44434;44435;44436 28339 28339 1 PCLQPCEHPEPCPRPEPIPLPAPCPSPEPCR Unmodified 3670.6612 0.66115372 1849 Q5T749 KPRP Keratinocyte proline-rich protein yes yes 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 52.535 52.81 4 0.03519 18499 20181213_JW_Orientia_Karp_3_1 35.648 13.409 44692000 8452400 0 12716000 0 0 4655500 18868000 0 7345 1849 6260 44437;44438;44439;44440 28340 28340 1 PCYATLFGPK Unmodified 1152.5638 0.56376603 975 H0YFA4;Q53FN1;P52943;P52943-2 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 51.92 52.121 2 0.0028374 18688 20181213_JW_Orientia_Karp_2_2 111.17 73.081 19697000 0 0 0 0 10959000 8738100 0 0 7346 975 6261 44441;44442;44443 28341;28342;28343 28341 3 PCYGILFGPK Unmodified 1150.5845 0.58450147 975 H0YFA4;Q53FN1;P52943;P52943-2;H0YHD8 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 56.836 57.22 2 5.2712E-07 21504 20181213_JW_Orientia_Karp_2_2 191.03 138.45 60583000 0 10993000 0 7146000 11043000 18208000 987780 12204000 7347 975 6262 44444;44445;44446;44447;44448;44449;44450;44451 28344;28345;28346;28347;28348;28349 28346 6 PDLTAALR Unmodified 855.48142 0.48141661 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;Q9H319;L7R9R4 HEL113;VIM;tmp_locus_29;DES Vimentin;Desmin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 46.737 46.927 2 0.0050335 16778 20181213_JW_Orientia_Karp_1_2 122.13 32.832 47777000 10776000 29028000 3725000 0 692460 3555700 0 0 7348 1571 6263 44452;44453;44454;44455;44456 28350;28351 28351 2 PDPAKSAPAPK Unmodified 1077.5819 0.58185893 1624 P23527 HIST1H2BO Histone H2B type 1-O no no 0 0 0 1 By MS/MS By matching 1 1 20.677 20.802 3 0.037346 4309 20181213_JW_Orientia_Karp_1_1 76.326 21.84 5611800 3652200 1959600 0 0 0 0 0 0 7349 1624 6264 44457;44458 28352 28352 1 PEEENSQYLSSRKNESSVAK 2 Deamidation (NQ) 2283.0503 0.050263834 415 A8MWG7;Q56UN5-2;Q56UN5-3;Q56UN5 MAP3K19 Mitogen-activated protein kinase kinase kinase 19 yes no 0 2 0 2 By MS/MS By matching By matching 1 1 1 60.092 60.509 3 0.040307 23296 20181213_JW_Orientia_Karp_2_1 48.376 9.3795 46757000 0 0 0 10111000 22606000 0 14040000 0 7350 415 6265 44459;44460;44461 28353 28353 1435 0 PEFLEDPSVLTK Unmodified 1373.7078 0.70784731 222 A0A024RBE7;P42167;G5E972;A0A024RBH7;P42167-2;P42167-3;P42166 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 59.672 60.014 2 0.0018959 25307 20181213_JW_Orientia_Karp_1_2 123.01 78.698 54743000 0 21434000 16645000 6110400 2927100 6826600 799780 0 7351 222 6266 44462;44463;44464;44465;44466;44467 28354;28355;28356;28357;28358;28359 28354 6 PEPAKSAPAPK Unmodified 1091.5975 0.597509 449;1817 B2R4S9;P62807;A0A024RCL8;O60814;Q0D2M2;P57053;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 18.544 18.784 3 0.0059407 3274 20181213_JW_Orientia_Karp_2_1 103.31 44.716 28813000 25097000 1341900 0 1031600 0 536330 806340 0 7352 449;1817 6267 44468;44469;44470;44471;44472 28360;28361;28362;28363 28361 4 PESFDLVVIGGGPGGYTGAIR Unmodified 2061.0531 0.053104788 1066 Karp_00014 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 1 70.776 70.884 2;3 1.4294E-37 28379 20181213_JW_Orientia_Karp_2_2 226.39 162.16 696280000 127140000 135610000 151780000 1335500 41194000 55328000 183520000 374740 7353 1066 6268 44473;44474;44475;44476;44477;44478;44479;44480;44481;44482;44483;44484;44485 28364;28365;28366;28367;28368;28369;28370 28367 7 PFADIAGIDVPDTSLPNSASVEQIQNK Unmodified 2825.4083 0.40831783 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 2 2 3 2 71.955 72.055 2;3;4 2.4287E-18 32616 20181213_JW_Orientia_Karp_1_3 212.92 159.43 13158000000 2684900000 5144800000 2943500000 357340000 588490000 361120000 799070000 278770000 7354 1371 6269 44486;44487;44488;44489;44490;44491;44492;44493;44494;44495;44496;44497;44498;44499;44500;44501;44502;44503;44504 28371;28372;28373;28374;28375;28376;28377;28378;28379;28380;28381 28374 10 PFADIAGIDVPDTSLPNSASVEQIQNK Deamidation (NQ) 2826.3923 0.39233342 1371 Karp_02001 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 2 3 1 1 2 2 1 72.843 72.912 2;3 6.3466E-34 33362 20181213_JW_Orientia_Karp_1_3 209.23 146.55 984830000 42681000 154470000 605040000 1393700 20808000 77649000 79417000 3376800 7355 1371 6269 44505;44506;44507;44508;44509;44510;44511;44512;44513;44514;44515;44516;44517 28382;28383;28384;28385 28383 841;1848 4 PFADIAGIDVPDTSLPNSASVEQIQNK 2 Deamidation (NQ) 2827.3763 0.376349 1371 Karp_02001 yes yes 0 2 0 0 By MS/MS 1 73.122 73.27 3 0.0029005 29827 20181213_JW_Orientia_Karp_2_1 102.16 53.263 0 0 0 0 0 0 0 0 0 7356 1371 6269 44518 28386 28386 841;1848 1 PFAIDIFPVTNK Unmodified 1360.7391 0.73908786 417 B4DLK7;C9JL30;H7C3B2;A8MXB9;Q75LP3;J3KQJ1;C9J660;F8WA42;Q8NBJ7;Q8NBJ7-3;F8WEV7;F8WES7;F8WEX5;E9PG02;B4DN71;E9PBT8;B4DQ27;J3QT17;Q8NBJ7-5;Q8NBJ7-4 SUMF2;DKFZP566I1024 Sulfatase-modifying factor 2 yes no 0 0 0 0 By MS/MS By matching 1 1 71.274 71.424 2 0.0090366 32677 20181213_JW_Orientia_Karp_1_2 99.343 46.132 5368100 0 2361000 0 0 0 0 3007000 0 7357 417 6270 44519;44520 28387 28387 1 PFDSDELSAR Unmodified 1135.5146 0.51456723 1321 Karp_01283 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 41.427 41.757 2 2.2582E-08 13699 20181213_JW_Orientia_Karp_1_3 195.57 110.21 214860000 71474000 61138000 41355000 16925000 5518300 0 16139000 2311300 7358 1321 6271 44521;44522;44523;44524;44525;44526;44527 28388;28389;28390;28391 28389 4 PFETLLSQNQGGK Unmodified 1417.7201 0.72014333 1574;756 V9HWE9;P09211;C7DJS1;C7DJS2 HEL-S-22;GSTP1 Glutathione S-transferase P no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 49.199 49.439 2 6.7723E-124 18222 20181213_JW_Orientia_Karp_1_3 338.01 206.92 255790000 102230000 0 101300000 0 21128000 0 0 31134000 7359 1574;756 6272 44528;44529;44530;44531;44532 28392;28393;28394;28395;28396 28393 5 PFETLLSQNQGGK Deamidation (NQ) 1418.7042 0.70415892 1574;756 V9HWE9;P09211;C7DJS1;C7DJS2 HEL-S-22;GSTP1 Glutathione S-transferase P no no 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 1 2 2 2 1 2 51.577 51.925 2 1.2478E-07 17242 20181213_JW_Orientia_Karp_2_1 172.21 54.182 98707000 35708000 16568000 0 17150000 9515200 15635000 534920 3595300 7360 1574;756 6272 44533;44534;44535;44536;44537;44538;44539;44540;44541;44542;44543;44544 28397;28398 28398 247;1629 1 PFEVPFLK Unmodified 975.54295 0.54295423 315 A6NFX8;Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes no 0 0 0 0 By MS/MS 1 65.565 65.664 2 0.038825 28510 20181213_JW_Orientia_Karp_1_3 77.674 23.125 1217400 0 0 1217400 0 0 0 0 0 7361 315 6273 44545 28399 28399 1 PFFHSLSEK Unmodified 1090.5447 0.54474515 1012 H9ZYJ2;P10599 TXN Thioredoxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.335 36.72 3 0.00029713 10717 20181213_JW_Orientia_Karp_2_3 154.49 74.034 192270000 51704000 0 0 77771000 17084000 11545000 22465000 11697000 7362 1012 6274 44546;44547;44548;44549;44550;44551;44552 28400;28401;28402;28403;28404;28405;28406 28404 7 PFFSSTVIQLQVDDQR Unmodified 1878.9476 0.94757708 1100 Karp_00268 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.774 67.976 2 1.4052E-62 26781 20181213_JW_Orientia_Karp_2_2 274.39 207.85 82170000 27355000 9064700 17003000 0 8088700 4298500 10252000 6109000 7363 1100 6275 44553;44554;44555;44556;44557;44558;44559 28407;28408;28409;28410;28411;28412;28413;28414 28411 8 PFGGMTTEFGDGAAAVR Oxidation (M) 1698.7672 0.76716988 1427 Karp_02373 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 48.743 49.05 2 0.0054237 18471 20181213_JW_Orientia_Karp_1_1 99.011 64.318 47387000 9224700 12359000 10909000 6409100 2517500 5880800 87178 0 7364 1427 6276 44560;44561;44562;44563;44564;44565;44566 28415 28415 1028 1 PFGQVISTR Unmodified 1003.5451 0.5450795 606 D3DPB2;E7ETU5;B4DN88;P29558-2;P29558;F8VV01;B7Z974;Q5CZ65;Q5CZ66;F8W1T6;Q15434 RBMS1;RBMS2 RNA-binding motif, single-stranded-interacting protein 1;RNA-binding motif, single-stranded-interacting protein 2 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 41.444 41.678 2 0.0030099 13062 20181213_JW_Orientia_Karp_2_1 113.71 60.77 38295000 32749000 0 0 3814700 0 1731700 0 0 7365 606 6277 44567;44568;44569 28416 28416 1 PFLELDTNLPANR Unmodified 1498.778 0.77799256 317 B4DJQ7;Q53Y51;B5MC82;B4E259;B7Z522;P30046;A6NHG4 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 62.107 62.477 2 0.0018106 24357 20181213_JW_Orientia_Karp_2_3 128.51 84.617 11292000 0 0 0 978000 0 2763400 0 7550700 7366 317 6278 44570;44571;44572 28417;28418;28419 28418 3 PFLWLAR Unmodified 901.51741 0.51740818 705 B5MDF5;J3KQE5;P62826;F5H018;B4DV51 RAN GTP-binding nuclear protein Ran yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 63.1 63.402 2 0.010672 27497 20181213_JW_Orientia_Karp_1_2 143.22 94.014 42522000 0 7926800 27974000 0 0 2854300 0 3767300 7367 705 6279 44573;44574;44575;44576;44577 28420;28421;28422;28423;28424;28425 28420 6 PFMTGAAEQIK Unmodified 1191.5958 0.59579444 896;1595 E9PJF7;A0A024RDY2;J3KPG2;Q9NXW1;P13693-2;Q56UQ5;Q5W0H4;P13693 TPT1 Translationally-controlled tumor protein;TPT1-like protein no no 0 0 0 0 By MS/MS 1 44.243 44.243 2 0.019241 15681 20181213_JW_Orientia_Karp_1_1 99.973 39.063 0 0 0 0 0 0 0 0 0 7368 896;1595 6280 44578 28426 28426 1 PFSGICGILGIK Unmodified 1260.69 0.69002918 1455 Karp_02592 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 1 1 1 67.019 67.239 2 1.9598E-08 26363 20181213_JW_Orientia_Karp_2_2 230.24 155.32 125740000 41016000 10149000 45170000 1100200 17328000 5676800 230740 5075500 7369 1455 6281 44579;44580;44581;44582;44583;44584;44585;44586;44587 28427;28428;28429;28430;28431;28432;28433;28434;28435 28432 9 PFSYPWAYK Unmodified 1157.5546 0.55458155 1134 Karp_00400 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 56.592 56.924 2 0.00024364 23038 20181213_JW_Orientia_Karp_1_3 176.41 117.49 116750000 0 40527000 53311000 0 7420800 15373000 0 122850 7370 1134 6282 44588;44589;44590;44591;44592;44593 28436;28437;28438;28439 28438 4 PFTLEGGQR Unmodified 1003.5087 0.50869399 1404 Karp_02212 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 38.526 38.819 2 0.00037817 12154 20181213_JW_Orientia_Karp_1_3 161.02 56.811 69532000 29901000 18479000 17111000 612040 2211300 0 0 1218300 7371 1404 6283 44594;44595;44596;44597;44598;44599 28440;28441;28442;28443 28442 4 PFVPNVHAAEFVPSFLR Unmodified 1926.0152 0.015203139 1600 P15170-2;P15170-3;Q8IYD1 GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 67.824 67.954 3 3.9737E-05 29991 20181213_JW_Orientia_Karp_1_3 142.91 114.88 20267000 8516900 1885000 6070000 0 2295400 1499400 0 0 7372 1600 6284 44600;44601;44602;44603;44604 28444;28445;28446 28446 3 PFYYQHPER Unmodified 1235.5724 0.57235688 958 G3XAI2;P07942;E7EPA6 LAMB1 Laminin subunit beta-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 29.798 30.399 3 0.032967 7768 20181213_JW_Orientia_Karp_3_1 66.435 39.728 1725600 0 0 0 721880 0 0 1003700 0 7373 958 6285 44605;44606;44607 28447;28448 28448 2 PGFQLASDGR Unmodified 1046.5145 0.51450765 1654 P35555;Q75N88 FBN1 Fibrillin-1 yes no 0 0 0 0 By MS/MS 1 41.441 41.951 2 0.015737 12817 20181213_JW_Orientia_Karp_3_2 107.45 59.031 0 0 0 0 0 0 0 0 0 7374 1654 6286 44608 28449 28449 1 PGGDTIFGK Unmodified 890.44978 0.44978213 1687 P49773;D6RC06;D6REP8;D6RE99;D6RD60 HINT1 Histidine triad nucleotide-binding protein 1 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 39.522 39.855 2 0.006374 12419 20181213_JW_Orientia_Karp_2_3 101.25 56.875 177760000 56026000 21720000 23922000 11121000 35665000 3563700 19744000 5995600 7375 1687 6287 44609;44610;44611;44612;44613;44614;44615;44616 28450;28451;28452;28453;28454 28452 5 PGGLGSSSLYGLGASR Unmodified 1477.7525 0.75250609 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 51.927 52.11 2 0.017579 20536 20181213_JW_Orientia_Karp_1_1 86.262 59.851 22027000 7870200 7959200 6197700 0 0 0 0 0 + 7376 811 6288 44617;44618;44619 28455 28455 1 PGGLLLGDVAPNFEANTTVGR Unmodified 2097.0855 0.085467549 1644 V9HWC7;P30041;B4DUK1 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 2 1 69.417 69.569 2 2.1742E-05 28049 20181213_JW_Orientia_Karp_2_3 138.05 93.538 23157000 0 0 5738600 0 3216700 7799200 0 6402200 7377 1644 6289 44620;44621;44622;44623;44624 28456;28457;28458 28457 3 PGGLLLGDVAPNFEANTTVGR Deamidation (NQ) 2098.0695 0.069483134 1644 V9HWC7;P30041;B4DUK1 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 0 1 0 0 By MS/MS 1 69.568 69.618 3 0.02598 28062 20181213_JW_Orientia_Karp_2_3 42.123 18.081 1722300 0 0 0 0 0 1722300 0 0 7378 1644 6289 44625 28459 28459 1094 0 PGGSDFLR Unmodified 847.41882 0.41881635 123 A0A024R5U3;H3BMD8;P56211-2;P56211;H3BTD3 ARPP-19;ARPP19 cAMP-regulated phosphoprotein 19 yes no 0 0 0 0 By MS/MS 1 37.753 38.303 2 0.031655 11361 20181213_JW_Orientia_Karp_2_1 93.195 52.623 0 0 0 0 0 0 0 0 0 7379 123 6290 44626 28460 28460 1 PGIVELPTLEELK Unmodified 1436.8126 0.81264673 725 B7Z768;P51970 NDUFA8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.216 69.361 2 0.00055434 24731 20181213_JW_Orientia_Karp_3_1 152.04 114.32 49641000 7627200 7140000 7330900 0 7568600 3418400 11442000 5113500 7380 725 6291 44627;44628;44629;44630;44631;44632;44633 28461;28462;28463;28464;28465;28466;28467;28468;28469 28468 9 PGMVVTFAPVNVTTEVK Unmodified 1787.9492 0.94915699 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;Q53G89;B4E2C5;Q14222 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 65.726 65.942 2 0.0001777 28640 20181213_JW_Orientia_Karp_1_3 138.45 87.436 79609000 31626000 23645000 16295000 524890 2502000 0 5016400 0 7381 1746 6292 44634;44635;44636;44637;44638;44639 28470;28471 28471 2 PGPTAESASGPSEDPSVNFLK Unmodified 2085.9855 0.98547873 693 B4E3V2;Q13501-2;Q13501;E9PFW8;E7EMC7;E3WH17 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 54.212 54.482 2 2.2307E-22 22113 20181213_JW_Orientia_Karp_1_1 242.91 187.13 55212000 14537000 26069000 9358900 3010500 2237000 0 0 0 7382 693 6293 44640;44641;44642;44643;44644 28472;28473;28474;28475 28472 4 PGQFIHTNWTGHGGTVSSSSYNA Unmodified 2404.0832 0.083235718 593 B4DL86;B4E2U0;P52209-2;P52209;A9Z1X1;B4DV68 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 44.176 44.419 3 0.041734 15388 20181213_JW_Orientia_Karp_1_2 35.329 13.526 65189000 21318000 16423000 21369000 0 3613000 2204000 0 262590 7383 593 6294 44645;44646;44647;44648;44649;44650 28476 28476 1 PGSIDSNNQLFAPGGR Unmodified 1628.7907 0.79068251 877 E7EUU4;Q04637-3;E7EX73;B4DSI9;E9PGM1;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637;Q04637-8;Q04637-9;Q96I65 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS 1 48.903 48.903 2 0.038711 18455 20181213_JW_Orientia_Karp_1_1 71.153 42.769 3871300 3871300 0 0 0 0 0 0 0 7384 877 6295 44651 28477 28477 1 PGTITPHCSFEAEVYVLTK Unmodified 2148.0561 0.056141256 1244 Karp_00911 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 56.207 56.549 3 9.45E-18 21258 20181213_JW_Orientia_Karp_2_3 214.54 179.93 410120000 129380000 134790000 138380000 5199000 0 0 0 2371900 7385 1244 6296 44652;44653;44654;44655;44656;44657 28478;28479;28480;28481 28481 4 PGTITPHSSFEAEVYVLTK Unmodified 2075.0575 0.057521464 1176 Karp_00632 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 56.049 56.406 3 8.6035E-07 22622 20181213_JW_Orientia_Karp_1_3 222.09 183.71 1271100000 327470000 216930000 343440000 119390000 131620000 118900000 7074200 6307700 7386 1176 6297 44658;44659;44660;44661;44662;44663;44664;44665 28482;28483;28484;28485;28486 28483 5 PGTTGSGAGSGGPGGLTSAAPAGGDK Unmodified 2083.977 0.97703931 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q15905 YBX1;YB-1 Nuclease-sensitive element-binding protein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 37.352 37.869 2 0.00071504 10913 20181213_JW_Orientia_Karp_3_2 123.63 93.828 10055000 0 4988200 0 1164100 0 0 3902200 0 7387 1745 6298 44666;44667;44668;44669;44670 28487;28488;28489 28489 3 PGTTGSGAGSGGPGGLTSAAPAGGDKK Unmodified 2212.072 0.072002329 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q15905 YBX1;YB-1 Nuclease-sensitive element-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 31.554 31.906 3 9.3026E-12 8016 20181213_JW_Orientia_Karp_2_1 148.4 106.15 22402000 4589700 5050800 0 5729600 5355900 0 0 1676300 7388 1745 6299 44671;44672;44673;44674;44675 28490;28491;28492;28493;28494;28495 28492 6 PGTYVIYVR Unmodified 1066.5811 0.58113065 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 47.484 47.826 2 0.00024777 17669 20181213_JW_Orientia_Karp_1_1 166.68 99.185 127340000 34331000 42348000 39536000 3623200 0 0 0 7502200 7389 1520 6300 44676;44677;44678;44679;44680 28496;28497;28498 28496 3 PGVDPNANVHSQSYGIPK Unmodified 1878.9224 0.92242497 1154 Karp_00560 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 39.452 39.784 3 0.0013273 12723 20181213_JW_Orientia_Karp_1_2 102.03 76.161 331900000 138100000 78331000 57290000 7601900 6370600 4062200 38039000 2102000 7390 1154 6301 44681;44682;44683;44684;44685;44686;44687;44688 28499;28500;28501;28502 28500 4 PHCNIGTIGHVDHGK Unmodified 1640.7842 0.78415735 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 2 2 21.703 22.066 3;4 0.0018929 4835 20181213_JW_Orientia_Karp_1_1 163.62 129.43 290790000 27436000 59570000 15358000 49615000 25966000 33970000 48797000 30081000 7391 1176;1244 6302 44689;44690;44691;44692;44693;44694;44695;44696;44697;44698;44699;44700;44701 28503;28504;28505;28506;28507;28508;28509 28503 7 PHETALVPAGIAISLPYGYEAQIR Unmodified 2565.3591 0.35912321 1378 Karp_02115 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.955 69.121 3 0.0050105 24619 20181213_JW_Orientia_Karp_3_1 66.845 23.369 103400000 22938000 26591000 0 3346700 11178000 7924900 25780000 5643400 7392 1378 6303 44702;44703;44704;44705;44706;44707;44708;44709 28510;28511;28512;28513;28514;28515;28516;28517;28518 28517 9 PIATLCIESQER Unmodified 1415.7079 0.70786408 1451 Karp_02532 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.07 48.415 2 0.0017803 16782 20181213_JW_Orientia_Karp_2_3 124.42 88.515 46639000 6968600 8772100 7797200 6734500 2514200 2868000 117070 10867000 7393 1451 6304 44710;44711;44712;44713;44714;44715;44716;44717 28519;28520;28521;28522;28523 28521 5 PIEGIPVSIK Unmodified 1051.6277 0.6277465 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 53.951 54.309 2 5.4503E-08 22048 20181213_JW_Orientia_Karp_1_1 195.05 118.27 247650000 72750000 41537000 65026000 19084000 16088000 31154000 71273 1937500 7394 1318 6305 44718;44719;44720;44721;44722;44723;44724;44725 28524;28525;28526;28527;28528;28529;28530 28524 7 PIIDQVNPELHDFMQR Acetyl (Protein N-term);2 Deamidation (NQ) 1994.9408 0.94077715 1934 Q96BZ9-2 yes yes 1 2 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 50.025 50.332 2 0.035631 18724 20181213_JW_Orientia_Karp_1_3 51.998 12.604 60996000 8487000 14568000 8933500 9305600 9510100 5655200 4536700 0 7395 1934 6306 44726;44727;44728;44729;44730;44731;44732 28531 28531 2063 1 PIIHFGSDYEDR Unmodified 1447.6732 0.67319314 281 B3KQX7;B4DI53;B4DDS1;X6RKS3;B4DJ65;B2NI05;B2NI04;Q86XR1;Q540C4;D4P3Q7;A2A2V1;Q6FGR8;Q6FGN5;Q5U0K3;Q53YK7;B2R5Q9;A1YVW6;Q6SES1;O75942;P04156-2;P04156 PRNP Major prion protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 44.69 44.923 3 0.0060779 16099 20181213_JW_Orientia_Karp_1_1 140.24 109.91 23312000 0 10471000 12175000 0 666260 0 0 0 7396 281 6307 44733;44734;44735;44736 28532;28533 28532 2 PINPILTNQLTQK Unmodified 1478.8457 0.84567819 1122 Karp_00322 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 53.195 53.482 2;3 6.3854E-35 20911 20181213_JW_Orientia_Karp_1_3 254.07 195.38 467360000 155960000 104930000 84426000 47894000 26684000 47471000 0 0 7397 1122 6308 44737;44738;44739;44740;44741;44742;44743;44744 28534;28535;28536;28537;28538;28539;28540 28536 6 PINPILTNQLTQK Deamidation (NQ) 1479.8297 0.82969378 1122 Karp_00322 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 55.024 55.382 2 0.010038 22246 20181213_JW_Orientia_Karp_1_2 109.16 83.942 51542000 6591400 17417000 15525000 2596700 3512800 4439400 442150 1016800 7398 1122 6308 44745;44746;44747;44748;44749;44750;44751;44752 28541;28542;28543;28544 28541 500 4 PIRPGQHPAASPTHPSAIR Unmodified 1989.0657 0.06567558 834 V9HW29;D3DRX6;P33176;B4DS27 HEL-S-61;KIF5B Kinesin-like protein;Kinesin-1 heavy chain yes no 0 0 0 1 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 24.155 24.568 5 0.033741 4531 20181213_JW_Orientia_Karp_3_2 55.437 31.149 24651000 0 0 8677200 0 2931300 3017900 6824700 3200000 7399 834 6309 44753;44754;44755;44756;44757 28545;28546 28546 2 PISINYR Unmodified 861.47085 0.47085192 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A0A075B5G3 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 38.933 39.233 2 0.019586 11453 20181213_JW_Orientia_Karp_2_2 102.98 21.981 72206000 0 28718000 33560000 2515400 6208700 1204600 0 0 7400 85 6310 44758;44759;44760;44761;44762 28547;28548 28548 2 PITEMLPGILSQLGADSLTSLR Unmodified 2311.2457 0.24573294 1870 Q6PJ77;Q96K17;E9PL10;Q96K17-2 BTF3L4 Transcription factor BTF3;Transcription factor BTF3 homolog 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 76.723 76.739 3 0.0021886 36147 20181213_JW_Orientia_Karp_1_1 88.951 60.06 13420000 6534400 2595700 4289600 0 0 0 0 0 7401 1870 6311 44763;44764;44765 28549;28550;28551;28552 28549 4 PIVGFIAGVTAPPGK Unmodified 1422.8235 0.82348619 1120 Karp_00318 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 62.908 63.144 2 0.00037912 26926 20181213_JW_Orientia_Karp_1_3 143.79 94.438 12534000 6212900 0 5688200 0 0 0 0 632620 7402 1120 6312 44766;44767;44768 28553 28553 1 PIYKPFSYPWAYK Unmodified 1658.8497 0.84970094 1134 Karp_00400 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.91 56.243 3 0.0064721 22952 20181213_JW_Orientia_Karp_1_2 106.79 75.912 78792000 11725000 9658500 10223000 3606500 0 22678000 20901000 0 7403 1134 6313 44769;44770;44771;44772;44773;44774 28554;28555;28556 28555 3 PKPGDGEFVEVISLPK Unmodified 1710.9192 0.91923707 315 A6NFX8;Q9UKK9;A6NJU6 NUDT5 ADP-sugar pyrophosphatase yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 56.776 57.217 3 0.02372 21422 20181213_JW_Orientia_Karp_2_2 82.349 52.716 11273000 0 0 0 0 2779200 5027400 579200 2886900 7404 315 6314 44775;44776;44777;44778 28557 28557 1 PLAATGLDNDIYR Deamidation (NQ) 1418.7042 0.70415892 1396 Karp_02152 yes yes 0 1 0 0 By MS/MS By matching 1 1 53.524 53.624 2 7.1201E-05 21602 20181213_JW_Orientia_Karp_1_1 173.04 94.097 29500000 11783000 0 17717000 0 0 0 0 0 7405 1396 6315 44779;44780 28558 28558 905 1 PLAATGLDNDIYR Unmodified 1417.7201 0.72014333 1396 Karp_02152 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 51.715 51.898 2 0.0054238 19999 20181213_JW_Orientia_Karp_1_2 109.39 80.431 106570000 24642000 48920000 33003000 0 0 0 0 0 7406 1396 6315 44781;44782;44783 28559 28559 1 PLAEGPQVTGPIEVPAAR Unmodified 1800.9734 0.9733979 975 H0YFA4;Q53FN1;P52943;P52943-2 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 57.043 57.368 2;3 4.3501E-32 20146 20181213_JW_Orientia_Karp_3_2 241.76 173.63 1021600000 134150000 194190000 125660000 121470000 148960000 155700000 3332200 138120000 7407 975 6316 44784;44785;44786;44787;44788;44789;44790;44791;44792;44793;44794;44795;44796;44797;44798 28560;28561;28562;28563;28564;28565;28566;28567;28568;28569;28570 28570 10 PLAGGEPVSLGSLR Unmodified 1351.746 0.74596415 1564 Q7L4Q3;P07203;P07203-2;X5DQZ7;A0A024R2T1;X5D926 GPX1 Glutathione peroxidase;Glutathione peroxidase 1 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 53.435 53.705 2 0.025538 19533 20181213_JW_Orientia_Karp_2_1 81.525 43.249 101460000 31352000 24262000 26607000 13048000 0 6185600 0 0 7408 1564 6317 44799;44800;44801;44802;44803 28571 28571 1 PLATQHDLALAYSPGVSAPCLK Unmodified 2308.1886 0.18855241 1336 Karp_01409 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.032 56.391 3 6.8378E-05 21163 20181213_JW_Orientia_Karp_2_1 144.82 88.767 246930000 111920000 0 67893000 14960000 29851000 16870000 2918800 2517600 7409 1336 6318 44804;44805;44806;44807;44808;44809;44810 28572;28573;28574;28575;28576 28573 4 PLDLAQGAEMK Oxidation (M);Deamidation (NQ) 1188.5696 0.56963927 404 B7ZLX8;B3KU11;B0YJ56;A8KA30;Q9BXW6 OSBPL1A Oxysterol-binding protein;Oxysterol-binding protein-related protein 1 yes no 0 1 1 0 By MS/MS By MS/MS 1 1 60.844 61.068 2 0.0084666 23758 20181213_JW_Orientia_Karp_2_1 109.48 23.006 194520000 151360000 0 0 43160000 0 0 0 0 7410 404 6319 44811;44812 28577;28578;28579 28579 1426 279 3 PLELSDFR Unmodified 975.50255 0.50254598 222 A0A024RBE7;P42167;G5E972;A0A024RBH7;P42167-2;Q59G12;H0YJH7;Q9P1N8 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 52.309 52.579 2 0.014538 20525 20181213_JW_Orientia_Karp_1_2 96.492 49.425 27763000 7919200 9586200 6251500 2206800 0 1799600 0 0 7411 222 6320 44813;44814;44815;44816;44817 28580;28581;28582 28581 3 PLIEVGELLDLTR Unmodified 1466.8344 0.83444481 106 A0A024R542;Q9C0C2;B3KXS7 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 74.507 74.531 2 0.015018 34666 20181213_JW_Orientia_Karp_1_2 91.123 51.275 19668000 2868300 5914200 6512200 0 0 0 4373500 0 7412 106 6321 44818;44819;44820;44821 28583 28583 1 PLILQSLGPK Unmodified 1064.6594 0.65938097 2018 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 55.175 55.491 2 0.0020926 20448 20181213_JW_Orientia_Karp_2_2 114.89 82.054 30911000 4422300 5879000 3987900 1958100 6313800 8216900 0 133410 7413 2018 6322 44822;44823;44824;44825;44826;44827;44828 28584 28584 1 PLIMNSIKSFSDHAQCGR Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 2119.9667 0.96667432 989 H3BMX8 NTAN1 yes yes 1 2 1 1 By MS/MS 1 64.061 64.311 2 0.029334 28033 20181213_JW_Orientia_Karp_1_2 59.57 9.3623 0 0 0 0 0 0 0 0 0 7414 989 6323 44829 28585 28585 350;1750 1 PLISVYSEK Unmodified 1034.5648 0.56481189 1660 Q59GY2;P36578;B4DMJ6;H3BU31;B4DFI6;Q53G74;B4DP82;H3BTP7 RPL4 60S ribosomal protein L4 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 45.7 45.95 2 0.0033784 16598 20181213_JW_Orientia_Karp_1_1 111.95 49.948 194740000 79747000 57680000 40642000 12836000 0 3833400 0 0 7415 1660 6324 44830;44831;44832;44833;44834 28586;28587 28586 2 PLLDNQVINSVCVQPELQNNTK 4 Deamidation (NQ) 2526.2159 0.21594895 308 E7EX82;B4E2T1;A5YM43;Q8NDX5-2;Q8NDX5;Q8NDX5-7 PHC3 Polyhomeotic-like protein 3 yes no 0 4 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 58.748 58.998 3 0.04168 22358 20181213_JW_Orientia_Karp_2_2 43.799 8.3625 68045000 10345000 8979300 20885000 8950900 12757000 6128100 0 0 7416 308 6325 44835;44836;44837;44838;44839;44840 28588 28588 1366;1367 1 PLLLPAK Unmodified 750.50036 0.50036114 1103 Karp_00280 yes yes 0 0 0 0 By MS/MS 1 45.765 46.115 2 0.026008 16349 20181213_JW_Orientia_Karp_1_2 94.669 76.004 5205900 0 5205900 0 0 0 0 0 0 7417 1103 6326 44841 28589 28589 1 PLLSATLPNGYR Deamidation (NQ) 1301.698 0.69795133 1062 Karp_00006 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 57.632 57.843 2 1.3717E-22 23683 20181213_JW_Orientia_Karp_1_3 231.38 143.74 89250000 33371000 28046000 19970000 0 3547900 4315100 0 0 7418 1062 6327 44842;44843;44844;44845;44846 28590;28591;28592;28593 28592 398 4 PLLVEPEGLEK Unmodified 1222.6809 0.68090428 786 CON__ENSEMBL:ENSBTAP00000024146;P01023 A2M Alpha-2-macroglobulin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 54.16 54.426 2 0.0045865 21445 20181213_JW_Orientia_Karp_1_3 105.4 71.144 115370000 29325000 20664000 42870000 4317000 9818800 8371900 0 0 + 7419 786 6328 44847;44848;44849;44850;44851;44852 28594;28595;28596;28597 28596 4 PLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIK Unmodified 3321.5525 0.55247546 1868 Q6NZI2;B4DPZ5;B4DNU9;Q6NZI2-2 PTRF Polymerase I and transcript release factor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.86 60.11 3 1.4633E-14 25638 20181213_JW_Orientia_Karp_1_1 129.72 103.99 342230000 110550000 68143000 76098000 22390000 37528000 27519000 0 0 7420 1868 6329 44853;44854;44855;44856;44857;44858 28598;28599;28600;28601;28602;28603;28604;28605 28598 8 PLPPAAIESPAVAAPAYSR Unmodified 1877.0047 0.0046980325 1553 V9HW43;P04792;B4DL87;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1 2 1 2 58.137 58.462 2;3 6.1844E-05 23979 20181213_JW_Orientia_Karp_1_3 130.64 106.35 4233000000 1012400000 835420000 570460000 670720000 238450000 720150000 635870 184800000 7421 1553 6330 44859;44860;44861;44862;44863;44864;44865;44866;44867;44868;44869;44870;44871 28606;28607;28608;28609;28610;28611;28612 28608 7 PLQLVTVTPVMLK Unmodified 1437.8629 0.86290816 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 67.982 68.234 2 0.0010293 30787 20181213_JW_Orientia_Karp_1_1 140.24 112.04 11175000 6120400 0 0 966780 0 0 3073900 1013500 7422 1193 6331 44872;44873;44874;44875;44876;44877 28613;28614;28615 28613 3 PLRLPLQDVYK Unmodified 1340.7816 0.78162138 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;B4E2C5;Q9H2I7;Q05639;A9X7H1;Q59GP5 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 51.454 51.721 3 0.0020179 20005 20181213_JW_Orientia_Karp_1_2 141.08 107.08 11637000 5323200 0 0 4542300 0 1771200 0 0 7423 1746 6332 44878;44879;44880;44881;44882 28616;28617;28618 28617 3 PLSTVFMNLR Oxidation (M) 1192.6274 0.62742892 1558 P05161 ISG15 Ubiquitin-like protein ISG15 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 54.636 54.924 2 0.00020826 22401 20181213_JW_Orientia_Karp_1_1 143.37 92.767 44935000 20849000 18656000 0 2064600 3365700 0 0 0 7424 1558 6333 44883;44884;44885;44886;44887 28619;28620;28621;28622;28623;28624 28619 1169 6 PLTAQQTTK Unmodified 986.53966 0.53965977 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching 1 1 20.509 20.759 2 0.00080184 4113 20181213_JW_Orientia_Karp_1_2 140.11 57.807 3761900 0 3439100 0 0 0 322820 0 0 7425 85 6334 44888;44889 28625 28625 1 PLTLSNYQTNK Unmodified 1277.6616 0.66156582 1547 Q76LA1;P04080 CSTB Cystatin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 39.767 40.133 2 0.0002428 12468 20181213_JW_Orientia_Karp_3_1 153.1 109.29 53482000 0 11728000 11225000 17440000 3323100 1602800 6676200 1486200 7426 1547 6335 44890;44891;44892;44893;44894;44895;44896;44897 28626;28627;28628;28629;28630;28631;28632 28632 7 PLTNMLK Oxidation (M) 831.45242 0.45242467 1396 Karp_02152 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 2 2 2 2 29.253 29.618 2 0.024139 8295 20181213_JW_Orientia_Karp_1_1 90.777 24.973 213660000 60550000 48934000 41582000 6466700 12302000 11570000 21767000 10486000 7427 1396 6336 44898;44899;44900;44901;44902;44903;44904;44905;44906;44907;44908;44909;44910;44911;44912 28633;28634 28633 999 2 PLTNMLK Unmodified 815.45751 0.45751004 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 40.275 40.568 2 0.0064671 13040 20181213_JW_Orientia_Karp_1_3 158.36 35.378 104140000 30527000 51078000 14787000 4068500 1599900 179490 1897100 0 7428 1396 6336 44913;44914;44915;44916;44917;44918;44919;44920 28635;28636;28637;28638;28639;28640 28637 6 PLTQVGGDHIK Unmodified 1163.6299 0.62987176 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 28.637 28.998 3 7.4415E-05 7514 20181213_JW_Orientia_Karp_1_2 155.33 115.46 32291000 0 13749000 12834000 0 2308400 619810 2779600 0 7429 1520 6337 44921;44922;44923;44924;44925 28641;28642;28643;28644 28641 4 PLTSIPDPFNEAK Unmodified 1427.7296 0.72964538 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 61.713 61.986 2 4.1254E-05 23892 20181213_JW_Orientia_Karp_2_2 172.61 125.79 399190000 97225000 123330000 86817000 14114000 37342000 27179000 0 13185000 7430 1118 6338 44926;44927;44928;44929;44930;44931;44932 28645;28646;28647;28648;28649;28650;28651;28652 28650 8 PLTTELTNEPENSLLSNQLK Unmodified 2240.1536 0.15360669 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 61.663 61.936 2 7.182E-256 22986 20181213_JW_Orientia_Karp_3_2 408.77 292.14 347930000 87576000 92022000 76964000 18020000 36694000 19885000 0 16773000 7431 1395 6339 44933;44934;44935;44936;44937;44938;44939 28653;28654;28655;28656;28657;28658;28659 28659 7 PLTTELTNEPENSLLSNQLK Deamidation (NQ) 2241.1376 0.13762228 1395 Karp_02151 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 63.521 63.621 2 2.1527E-108 27310 20181213_JW_Orientia_Karp_1_1 305.98 238.77 55485000 32277000 10741000 9160700 0 0 3306200 0 0 7432 1395 6339 44940;44941;44942;44943;44944 28660;28661;28662 28660 898;899 3 PLVEEPQNLIK Unmodified 1278.7184 0.71835242 620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;B7WNR0;B4DPR2;Q8IUK7;C9JKR2;H0YA55;D6RHD5;P02768-2 ALB Serum albumin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 52.201 52.494 2 0.0026887 20909 20181213_JW_Orientia_Karp_1_1 114.97 75.946 87163000 69749000 0 1993800 7775500 3420200 3790100 0 434120 + 7433 620 6340 44945;44946;44947;44948;44949;44950 28663 28663 1 PLVIQLPIGIEDTFK Unmodified 1681.9655 0.96545898 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 74.823 74.855 2 7.3349E-14 34827 20181213_JW_Orientia_Karp_1_1 208.82 184.75 232820000 79660000 26883000 67671000 8536500 8426400 8831700 23090000 9718600 7434 1094 6341 44951;44952;44953;44954;44955;44956;44957;44958 28664;28665;28666;28667;28668;28669;28670 28664 7 PLVQLVESGGGLVK Acetyl (Protein N-term);Deamidation (NQ) 1437.8079 0.80789571 1785 Q0ZCJ6 yes yes 1 1 0 0 By MS/MS 1 36.673 37.283 2 0.0099137 10452 20181213_JW_Orientia_Karp_3_2 89.08 45.637 0 0 0 0 0 0 0 0 0 7435 1785 6342 44959 28671 28671 1987 1 PLYFADR Unmodified 880.4443 0.44430282 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YM50;B3KRQ1 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.257 44.617 2 0.012803 15269 20181213_JW_Orientia_Karp_1_3 134.44 59.606 168750000 45884000 69395000 47626000 3862000 0 0 1736700 248140 7436 124 6343 44960;44961;44962;44963;44964;44965 28672;28673;28674 28674 3 PLYVALAQR Unmodified 1029.5971 0.59711507 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E7ERJ7;B4DQX0;H0YAR2;H0YB86;B1ANR0;Q6IQ30;Q4VXU2;Q13310-2;Q13310;Q13310-3;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;Q15164;H0YEU6;Q147Y3;Q3B867;Q59GZ7;Q53GL4;H0Y5F5 PABPC1;PABPC4;PABPC1L;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4;Polyadenylate-binding protein 3 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 48.735 49.017 2 0.012605 18153 20181213_JW_Orientia_Karp_1_2 88.942 45.696 82756000 20937000 29452000 18128000 0 0 11777000 0 2462800 7437 179 6344 44966;44967;44968;44969;44970;44971 28675;28676 28675 2 PMCVESFSDYPPLGR Unmodified 1753.7804 0.7803771 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;Q53G89;B4E2C5;Q14222;Q2F837;Q96EB3 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 61.413 61.677 2 0.002479 26444 20181213_JW_Orientia_Karp_1_2 119.76 88.875 30098000 13244000 9413900 6579100 0 0 0 0 860710 7438 1746 6345 44972;44973;44974;44975 28677;28678;28679 28678 3 PMFIVNTNVPR Unmodified 1286.6805 0.68052712 1021 I4AY87;P14174 MIF Macrophage migration inhibitory factor yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 2 1 1 1 1 1 55.281 55.621 2 3.8451E-07 22051 20181213_JW_Orientia_Karp_1_3 185.6 126.45 880020000 216430000 210020000 257920000 58383000 60870000 73542000 127880 2728200 7439 1021 6346 44976;44977;44978;44979;44980;44981;44982;44983;44984 28680;28681;28682 28681 3 PMFIVNTNVPR Deamidation (NQ) 1287.6645 0.66454271 1021 I4AY87;P14174 MIF Macrophage migration inhibitory factor yes no 0 1 0 0 By MS/MS 1 58.603 58.801 2 0.0054684 24281 20181213_JW_Orientia_Karp_1_3 126.31 82.871 0 0 0 0 0 0 0 0 0 7440 1021 6346 44985 28683 28683 374 1 PMFIVNTNVPR Oxidation (M) 1302.6754 0.67544174 1021 I4AY87;P14174 MIF Macrophage migration inhibitory factor yes no 0 0 1 0 By MS/MS By MS/MS 1 1 49.786 50.167 2 0.00038305 17571 20181213_JW_Orientia_Karp_2_2 142.98 95.113 40433000 0 0 0 0 21866000 0 0 18567000 7441 1021 6346 44986;44987 28684;28685;28686 28685 562 3 PMLDSVATNR Oxidation (M) 1118.539 0.53900784 565 Q53S13;B4DFF7;H0Y6P9;E9LCZ3;E9LCZ2;Q9HCR9-4;Q9HCR9-3;Q9HCR9-2;Q9HCR9 PDE11A Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A yes no 0 0 1 0 By MS/MS 1 62.646 63.156 2 0.015964 23721 20181213_JW_Orientia_Karp_3_2 84.568 13.188 4466400 0 0 0 0 0 0 0 4466400 7442 565 6347 44988 28687 28687 351 1 PMNIQLVTSQIDAQR Oxidation (M);Deamidation (NQ) 1729.8669 0.86688392 886 E9PB61;Q86V81 ALYREF THO complex subunit 4 yes no 0 1 1 0 By MS/MS 1 51.618 51.968 2 0.027089 20008 20181213_JW_Orientia_Karp_1_2 92.781 33.516 33406000 0 33406000 0 0 0 0 0 0 7443 886 6348 44989 28688 28688 1698 508 1 PMNIQLVTSQIDAQR Oxidation (M) 1728.8829 0.88286834 886 E9PB61;Q86V81 ALYREF THO complex subunit 4 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 51.61 51.863 2;3 0.0005634 18757 20181213_JW_Orientia_Karp_2_3 136.83 89.946 10844000 3082000 0 0 0 2946300 4037500 0 777750 7444 886 6348 44990;44991;44992;44993 28689;28690;28691 28690 508 3 PMPNPNPNHPSSSGSFSDADLADGVSGGEGK Oxidation (M) 3040.3105 0.31047105 1004 H7C2F2;A8MQT7;P14209-2;P14209;P14209-3 CD99 CD99 antigen yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 43.595 43.925 3 7.2564E-06 14827 20181213_JW_Orientia_Karp_1_3 97.366 81.164 318120000 75710000 83810000 96662000 0 0 15513000 46187000 234580 7445 1004 6349 44994;44995;44996;44997;44998;44999;45000 28692;28693;28694;28695;28696;28697 28695 555 5 PMPNPNPNHPSSSGSFSDADLADGVSGGEGK Unmodified 3024.3156 0.31555643 1004 H7C2F2;A8MQT7;P14209-2;P14209;P14209-3 CD99 CD99 antigen yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 47.147 47.389 3 1.7892E-10 16746 20181213_JW_Orientia_Karp_1_3 122.31 103.27 251740000 70597000 0 72455000 0 47788000 21105000 0 39792000 7446 1004 6349 45001;45002;45003;45004;45005 28698;28699;28700;28701;28702 28698 5 PMQFLGDEETVR Unmodified 1420.6657 0.66566492 1608 Q6P6D7;Q6FHU2;Q53G35;P18669;B4DMJ7;B4DKL5;Q0D2Q6;Q6FHK8;B7Z9E5;B4DJA4;A4D2J6;P15259 PGAM1;hCG_2015269;PGAM2 Phosphoglycerate mutase;Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 51.688 52.061 2 0.00084656 20514 20181213_JW_Orientia_Karp_1_1 138.45 60.705 140650000 43726000 36268000 37301000 7893700 0 7854000 6152300 1452200 7447 1608 6350 45006;45007;45008;45009;45010;45011;45012 28703 28703 1 PMQFLGDEETVR Oxidation (M) 1436.6606 0.66057954 1608 Q6P6D7;Q6FHU2;Q53G35;P18669;B4DMJ7;B4DKL5;Q0D2Q6;Q6FHK8;B7Z9E5;B4DJA4;A4D2J6;P15259 PGAM1;hCG_2015269;PGAM2 Phosphoglycerate mutase;Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 44.41 44.754 2 0.0019095 15524 20181213_JW_Orientia_Karp_1_2 118.77 61.419 123780000 36122000 37336000 18604000 6655200 0 7221600 14538000 3305200 7448 1608 6350 45013;45014;45015;45016;45017;45018;45019 28704;28705;28706;28707 28704 1230 4 PMQPGPHVVK Unmodified 1088.5801 0.5800848 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 25.573 26.025 3 0.0010537 6160 20181213_JW_Orientia_Karp_1_2 111.06 50.583 16816000 0 10631000 1982400 0 0 0 980870 3221900 7449 1520 6351 45020;45021;45022;45023 28708;28709;28710 28708 3 PMQPGPHVVK Oxidation (M) 1104.575 0.57499942 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 21.969 22.338 3 0.0013052 4663 20181213_JW_Orientia_Karp_1_3 117.01 61.644 20884000 0 12063000 4774200 1681300 92294 715070 0 1558100 7450 1520 6351 45024;45025;45026;45027;45028;45029 28711 28711 1132 1 PNMVTPGHACTQK Oxidation (M) 1455.6599 0.65986803 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;A4UCS9;H3BU78;A4UCT0 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 18.785 19.015 3 0.040882 3580 20181213_JW_Orientia_Karp_1_1 67.964 27.948 3882400 2010400 0 632160 426330 0 537720 275790 0 7451 1546 6352 45030;45031;45032;45033;45034 28712 28712 1 PNQKANPTPPNLRNNR 3 Deamidation (NQ) 1832.9129 0.91292291 1822 Q2WGN9 GAB4 GRB2-associated-binding protein 4 yes yes 0 3 0 2 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 48.11 48.523 2 0.033291 15621 20181213_JW_Orientia_Karp_3_2 64.73 15.649 17645000 6489300 0 0 5378600 0 2693700 269050 2814800 7452 1822 6353 45035;45036;45037;45038;45039 28713 28713 1999 0 PNSEPASLLELFNSIATQGELVR Unmodified 2484.286 0.28601785 138 A0A024R6K8;P23381;B4DTK8;G3V277;G3V3P2;G3V227;G3V2Y7;G3V4C7;G3V4N8;G3V5W1;G3V3S7;G3V3X0;G3V5H5;P78534;G3V4A3;G3V4Q0;G3V2F2;G3V3R3;G3V4S4;G3V313;G3V339;G3V2C0;G3V4N0 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 77.176 77.146 3 3.306E-06 36381 20181213_JW_Orientia_Karp_1_1 136.56 89.73 42544000 13030000 0 19104000 0 1651900 1481300 7276900 0 7453 138 6354 45040;45041;45042;45043;45044 28714;28715;28716 28714 3 PPAVNQQFPQEDAGSVRR 4 Deamidation (NQ) 1998.9283 0.9282982 83 E9PH58;B4DZ35;E7EX20;A0A024R424;Q14679 TTLL4 Tubulin polyglutamylase TTLL4 yes no 0 4 0 1 By MS/MS 1 76.229 76.179 2 0.041055 28689 20181213_JW_Orientia_Karp_3_1 40.577 10.246 0 0 0 0 0 0 0 0 0 7454 83 6355 45045 28717 28717 1281;1282;1283 1 PPYTVVYFPVR Unmodified 1336.718 0.71795849 1574 V9HWE9;P09211;A8MX94;Q5D6A5 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 62.65 62.945 2 4.379E-10 27254 20181213_JW_Orientia_Karp_1_2 209.19 165.54 501020000 160410000 122090000 87596000 9238800 66305000 34633000 149050 20605000 7455 1574 6356 45046;45047;45048;45049;45050;45051;45052;45053 28718;28719;28720;28721;28722;28723;28724;28725 28719 8 PQAPATVGLAFR Unmodified 1226.6772 0.6771563 747 B8ZZU8;I3L0M9;Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 51.567 51.912 2 0.016918 17941 20181213_JW_Orientia_Karp_3_1 87.789 54.948 101480000 22772000 14333000 22487000 15125000 7744400 14932000 2985800 1098900 7456 747 6357 45054;45055;45056;45057;45058;45059;45060;45061 28726;28727 28727 2 PQEAAVAPEKPPASDETK Unmodified 1863.9214 0.92142191 1642 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 30.526 30.851 3 0.00038482 8674 20181213_JW_Orientia_Karp_1_1 127.88 93.028 17694000 9451500 3484900 2457400 0 0 0 2300400 0 7457 1642 6358 45062;45063;45064;45065;45066 28728;28729;28730 28728 3 PQEQLTLEPYER Unmodified 1501.7413 0.7412727 1619;318 Q96BS4;P22087;M0R299;M0QXL5;A6NHQ2;R4GMW7 FBL;FBLL1 rRNA 2'-O-methyltransferase fibrillarin;rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 no no 0 0 0 0 By matching By MS/MS By matching 1 1 1 48.667 49.067 2 0.0091153 17956 20181213_JW_Orientia_Karp_1_3 99.215 54.652 13391000 0 6068400 7276300 0 0 0 46302 0 7458 1619;318 6359 45067;45068;45069 28731 28731 1 PQHQMLFYK Oxidation (M) 1206.5856 0.5855641 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;A0A075B727;A0A075B728;A0A075B737 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 1 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 28.583 28.958 3 0.0073174 7338 20181213_JW_Orientia_Karp_1_3 95.358 64.671 17587000 0 6237100 3320600 1194800 1461800 1755800 3617200 0 7459 274 6360 45070;45071;45072;45073;45074;45075 28732;28733 28732 195 2 PQLMVKHAMTMQPYLTTK 2 Oxidation (M);Deamidation (NQ) 2150.0574 0.057403584 1866 Q6IEH8;Q6KC79-2;Q6KC79 NIPBL Nipped-B-like protein yes no 0 1 2 1 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 2 56.052 56.424 3 0.028354 21001 20181213_JW_Orientia_Karp_2_2 54.953 36.279 88174000 8436600 0 0 23486000 37811000 17184000 1256400 0 7460 1866 6361 45076;45077;45078;45079;45080;45081;45082 28734;28735 28735 2012 0 PQMVKAVQPQEMSQMK 2 Oxidation (M);2 Deamidation (NQ) 1892.8682 0.86820583 968 H0YBG8;Q9UKQ2 ADAM28 Disintegrin and metalloproteinase domain-containing protein 28 yes no 0 2 2 1 By MS/MS 1 52.615 52.965 3 0.03693 20791 20181213_JW_Orientia_Karp_1_2 44.601 8.5794 4334100 0 4334100 0 0 0 0 0 0 7461 968 6362 45083 28736 28736 1741;1742 0 PQTQNLGTPGPALSHSR Unmodified 1759.8965 0.89654457 647 Q9BT70;B4DVR4;H0YAZ3;H0YB51;E5RHI2;H0YBA2;O60504-2;O60504 SORBS3 Vinexin yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 33.486 33.912 3 0.0056036 8842 20181213_JW_Orientia_Karp_3_2 87.419 60.083 32961000 0 10463000 15826000 4669300 0 0 0 2001700 7462 647 6363 45084;45085;45086;45087 28737;28738 28738 2 PQVMRVQIR Oxidation (M);2 Deamidation (NQ) 1143.607 0.60702783 1579 P0C091 FREM3 FRAS1-related extracellular matrix protein 3 yes yes 0 2 1 1 By MS/MS 1 25.701 25.799 3 0.039335 6111 20181213_JW_Orientia_Karp_1_3 49.418 12.227 0 0 0 0 0 0 0 0 0 7463 1579 6364 45088 28739 28739 1925;1926 1 PQVQLHVQSQTQPVSLANTQPR Unmodified 2455.2932 0.29316891 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;B4DQR8;H7C3D3 ZYX Zyxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.553 45.898 3 4.5043E-23 15882 20181213_JW_Orientia_Karp_1_3 196.36 152.13 578440000 151430000 99009000 86769000 77095000 0 52422000 49026000 62695000 7464 1812 6365 45089;45090;45091;45092;45093;45094;45095;45096 28740;28741;28742;28743;28744;28745;28746;28747;28748;28749;28750 28743 11 PQVQLHVQSQTQPVSLANTQPR Deamidation (NQ) 2456.2772 0.2771845 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;B4DQR8;H7C3D3 ZYX Zyxin yes no 0 1 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 46.966 47.284 3 0.020858 16190 20181213_JW_Orientia_Karp_2_3 70.917 39.117 44074000 0 18272000 11007000 4655300 2520600 4244400 0 3374700 7465 1812 6365 45097;45098;45099;45100;45101;45102 28751;28752;28753 28753 1165;1994 3 PQYQTWEEFSR Unmodified 1469.6575 0.65754307 1684 P49458;Q6P2S0;Q659G3;E9PE20;A0A024R3P3;P49458-2 SRP9;DKFZp564M2223 Signal recognition particle 9 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.436 50.782 2 9.4728E-35 17189 20181213_JW_Orientia_Karp_3_2 265.77 192.89 447530000 91106000 69131000 56503000 76662000 48376000 59434000 32329000 13993000 7466 1684 6366 45103;45104;45105;45106;45107;45108;45109;45110 28754;28755;28756;28757;28758;28759;28760;28761 28761 8 PRHQEGEIFDTEK Unmodified 1584.7532 0.75323437 226 Q8TBK5;Q8N5Z7;B2R4K7;A0A024RBK3;Q9HBB3;Q02878;B4DRX3 RPL6 60S ribosomal protein L6 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 25.776 26.209 3 0.0089665 5198 20181213_JW_Orientia_Karp_3_2 101.38 66.695 38702000 0 0 12863000 0 5611600 4519600 10508000 5199000 7467 226 6367 45111;45112;45113;45114;45115 28762;28763;28764 28764 3 PRNQGGYGGSSSSSSYGSGR Deamidation (NQ) 1947.8307 0.83070943 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q6IPF2;H0YH80;B4E0B5;Q3MI39 HNRNPA1;HNRPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 22.602 22.877 3 0.00013012 5149 20181213_JW_Orientia_Karp_1_1 132.52 108.92 10330000 1664200 3392100 0 1672000 1546200 1535100 520490 0 7468 209 6368 45116;45117;45118;45119;45120;45121;45122 28765;28766;28767;28768;28769;28770 28765 84 6 PRPGVTEATITGLEPGTEYTIYVIALK Unmodified 2888.5535 0.5535255 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617;A6YID7;H0Y4K8;O95608 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.478 71.557 3 3.2095E-11 32363 20181213_JW_Orientia_Karp_1_3 147.78 134.67 219900000 58707000 46506000 45284000 8586600 14194000 13078000 33540000 0 7469 85 6369 45123;45124;45125;45126;45127;45128;45129 28771;28772;28773;28774;28775;28776;28777 28773 7 PRTVSDSSEDK Unmodified 1219.5681 0.56805936 1166 Karp_00620 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 12.634 12.909 2 0.012453 2080 20181213_JW_Orientia_Karp_1_2 138.76 56.484 1009500 130790 0 448360 0 0 56453 373930 0 7470 1166 6370 45130;45131;45132;45133;45134 28778;28779 28778 2 PSDLRPGDVSSK Unmodified 1256.6361 0.63607935 622 B4DPW5;B7Z6G4;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682;B4E3I0;Q7Z2Y9 CALD1;DKFZp686P03208 Caldesmon yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 26.193 26.55 3 0.037571 6364 20181213_JW_Orientia_Karp_1_2 80.737 53.987 16635000 0 3351600 3011900 0 7082900 0 0 3188500 7471 622 6371 45135;45136;45137;45138 28780 28780 1 PSFADQVTSK Unmodified 1078.5295 0.52948901 1268 Karp_01076 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 36.526 36.935 2 2.4413E-35 11190 20181213_JW_Orientia_Karp_1_3 271.26 189.02 590810000 0 159580000 163060000 36140000 68361000 29984000 101970000 31703000 7472 1268 6372 45139;45140;45141;45142;45143;45144;45145 28781;28782;28783;28784;28785 28782 5 PSFCSLK Unmodified 837.40547 0.40547447 2050 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 42.254 42.555 2 0.026398 13210 20181213_JW_Orientia_Karp_2_2 94.163 44.044 157190000 23408000 25770000 31541000 12215000 7746500 9973100 44399000 2134800 + 7473 2050 6373 45146;45147;45148;45149;45150;45151;45152;45153;45154 28786 28786 1 PSILETTK Unmodified 887.4964 0.49639797 1362 Karp_01816 yes yes 0 0 0 0 By MS/MS 1 35.662 35.86 2 0.039691 10668 20181213_JW_Orientia_Karp_1_3 89.296 6.6244 0 0 0 0 0 0 0 0 0 7474 1362 6374 45155 28787 28787 1 PSLQVESLR Unmodified 1027.5662 0.56620887 1093 Karp_00242 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 43.227 43.557 2 6.8407E-05 14678 20181213_JW_Orientia_Karp_1_3 191.45 100.18 662900000 194000000 267810000 125680000 22002000 6892700 0 43929000 2597100 7475 1093 6375 45156;45157;45158;45159;45160;45161;45162;45163;45164 28788;28789;28790;28791;28792;28793;28794 28790 7 PSMLQHLLRR Oxidation (M);Deamidation (NQ) 1266.6867 0.68667513 1617 P21817-3;P21817-2;P21817;M0R014 RYR1 Ryanodine receptor 1 yes no 0 1 1 1 By MS/MS 1 35.543 35.543 3 0.040055 10935 20181213_JW_Orientia_Karp_1_1 45.137 10.605 9428800 9428800 0 0 0 0 0 0 0 7476 1617 6376 45165 28795 28795 1932 0 PSPAISVSVSAPAFYAPQK Unmodified 1916.0044 0.0043636815 1812 Q15942;H0Y2Y8;C9IZ41 ZYX Zyxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 61.976 62.283 2 7.1768E-55 26480 20181213_JW_Orientia_Karp_1_3 265.77 227.19 145190000 47446000 17537000 18438000 7315200 25650000 20883000 117920 7803000 7477 1812 6377 45166;45167;45168;45169;45170;45171;45172;45173 28796;28797;28798;28799;28800;28801 28798 6 PSPPPNVDYPLDGEK Deamidation (NQ) 1624.7621 0.76206772 495 Q86SY7;Q86TY2;V9GYX7;Q05DQ7;Q53HF6;Q53H79;B2RDG9;Q9NZ32 ACTR10 Actin-related protein 10 yes no 0 1 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 51.933 52.183 3 0.016814 18659 20181213_JW_Orientia_Karp_2_2 89.507 20.721 33623000 6022500 7328700 8902500 6297500 2574900 2496700 0 0 7478 495 6378 45174;45175;45176;45177;45178;45179 28802 28802 182 1 PSQMEHAMETMMFTFHK Oxidation (M) 2097.8781 0.87805901 1719 Q6FGE5;P60903 S100A10 Protein S100-A10 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 50.26 50.45 4 0.010405 19070 20181213_JW_Orientia_Karp_1_2 81.992 67.222 33583000 8444500 8880900 8860700 0 4110300 3286200 0 0 7479 1719 6379 45180;45181;45182;45183;45184 28803;28804;28805;28806 28804 1344;1345;1346;1347 4 PSQMEHAMETMMFTFHK Unmodified 2081.8831 0.88314439 1719 Q6FGE5;P60903 S100A10 Protein S100-A10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 56.644 56.844 4 0.00013809 23780 20181213_JW_Orientia_Karp_1_1 148.52 119.97 31157000 16866000 5465500 5685200 0 0 3140700 0 0 7480 1719 6379 45185;45186;45187;45188 28807;28808;28809 28807 3 PSQMEHAMETMMFTFHK 2 Oxidation (M) 2113.873 0.87297363 1719 Q6FGE5;P60903 S100A10 Protein S100-A10 yes no 0 0 2 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 2 2 1 2 41.182 41.5 4 0.018016 12430 20181213_JW_Orientia_Karp_2_1 66.335 43.369 77443000 6727800 9833300 24715000 9258300 5153200 1325900 20429000 0 7481 1719 6379 45189;45190;45191;45192;45193;45194;45195;45196;45197;45198;45199 28810;28811;28812 28811 1344;1345;1346;1347 2 PSQVLQPLWAASHTPDFFGSALR Unmodified 2524.2863 0.28629262 210 A8K6A5;A0A024RB01;P08648 ITGA5 Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 71.864 71.973 3 0.031063 32957 20181213_JW_Orientia_Karp_1_1 42.618 11.551 38022000 12780000 9038700 6171000 4365400 0 0 5667000 0 7482 210 6380 45200;45201;45202;45203;45204 28813;28814;28815 28813 3 PSQVVAETR Unmodified 985.51926 0.51925868 1593 P13639;Q8TA90;B4DPU3 EEF2 Elongation factor 2 yes no 0 0 0 0 By MS/MS 1 24.394 24.394 2 0.0099692 5917 20181213_JW_Orientia_Karp_1_1 117.02 63.054 0 0 0 0 0 0 0 0 0 7483 1593 6381 45205 28816 28816 1 PSSPSPMPSSTPSPSLNLGNTEEAIR Oxidation (M) 2668.265 0.26502441 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 54.794 55.091 2;3 3.8814E-14 20320 20181213_JW_Orientia_Karp_2_1 161.64 130.82 462410000 106810000 71774000 152900000 41555000 57335000 31349000 0 682580 7484 345 6382 45206;45207;45208;45209;45210;45211;45212;45213;45214;45215;45216;45217 28817;28818;28819;28820;28821;28822;28823;28824;28825;28826 28822 234 10 PSSPSPMPSSTPSPSLNLGNTEEAIR Unmodified 2652.2701 0.27010979 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 59.008 59.244 2;3 8.4877E-08 22560 20181213_JW_Orientia_Karp_2_1 117.22 79.199 183130000 62583000 82490000 0 6214100 18984000 12865000 0 0 7485 345 6382 45218;45219;45220;45221;45222;45223;45224 28827;28828;28829;28830;28831;28832 28830 6 PSSSPVIFAGGQDR Unmodified 1416.6997 0.69974224 594 B4DLC0;Q15366-6;Q15366-3;Q15366;Q15366-2;H3BSS4 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 45.886 46.196 2 0.013808 16162 20181213_JW_Orientia_Karp_1_3 92.19 36.728 68966000 17178000 19720000 24143000 0 2195400 0 1137000 4593000 7486 594 6383 45225;45226;45227;45228;45229;45230 28833;28834 28833 2 PSSSRSYVTTSTR Unmodified 1427.7005 0.70047052 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 1 By MS/MS By matching 1 1 19.875 20.225 3 0.039904 3901 20181213_JW_Orientia_Karp_1_2 73.881 34.922 1342200 0 1014400 0 0 0 0 327740 0 7487 1571 6384 45231;45232 28835 28835 1 PSYQEEAVTK Unmodified 1150.5506 0.55061839 634 B4DSE2;B4E0C7;Q53HP2;D3DQU2;O14773-2;O14773;B2R608;B4DIV8;B4DE89 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 28.827 29.027 2 1.3139E-08 7873 20181213_JW_Orientia_Karp_1_1 201.84 84.033 11057000 4319300 4055700 1993300 0 0 688260 0 0 7488 634 6385 45233;45234;45235;45236 28836 28836 1 PTAIDSR Unmodified 758.39227 0.39226725 1213 Karp_00875 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 20.498 20.785 2 0.041897 4087 20181213_JW_Orientia_Karp_1_2 82.305 0 3525700 0 1576200 973330 682650 0 0 293500 0 7489 1213 6386 45237;45238;45239;45240 28837 28837 1 PTEGIVVMVGGGYR Unmodified 1433.7337 0.7336849 1297 Karp_01188 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 55.848 56.169 2 0.0017522 20987 20181213_JW_Orientia_Karp_2_1 128.01 104.7 88704000 26728000 18197000 19949000 7492300 8640900 5331100 2366000 0 7490 1297 6387 45241;45242;45243;45244;45245;45246;45247 28838 28838 1 PTGPGGPLIQNVHASK 2 Deamidation (NQ) 1573.81 0.81002097 894 Q75MX6;E9PFE2;Q59FS0;Q9UHL9-2;Q9UHL9;Q9UHL9-3 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 yes no 0 2 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 2 2 2 1 2 2 55.759 56.098 3 0.035873 22452 20181213_JW_Orientia_Karp_1_1 74.783 29.504 1223000000 226390000 189250000 325720000 82574000 107440000 278740000 0 12867000 7491 894 6388 45248;45249;45250;45251;45252;45253;45254;45255;45256;45257;45258;45259 28839;28840;28841 28839 1707 3 PTKPAASDLPVPAEGVR Unmodified 1703.9206 0.92063405 622 B4DPW5;B7Z6G4;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682;E9PGZ1;Q9NYG1;B4E3I0;C9J813;Q7Z2Y9 CALD1;DKFZp686P03208 Caldesmon yes no 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 42.165 42.481 3 0.042432 13549 20181213_JW_Orientia_Karp_3_1 69.805 20.322 49538000 8707800 9934200 8540000 7135100 0 4349500 10872000 0 7492 622 6389 45260;45261;45262;45263;45264;45265 28842 28842 1 PTNNQLVR Unmodified 940.50903 0.50902834 1092 Karp_00241 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 23.338 23.801 2 4.3289E-05 5126 20181213_JW_Orientia_Karp_3_1 205.58 122.21 94024000 0 56585000 0 9539500 12441000 0 9144600 6314400 7493 1092 6390 45266;45267;45268;45269;45270;45271 28843;28844;28845;28846;28847;28848 28847 6 PTNNQLVR Deamidation (NQ) 941.49304 0.49304393 1092 Karp_00241 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 2 2 1 2 27.461 27.853 2 0.0049398 7125 20181213_JW_Orientia_Karp_1_1 131.03 66.464 36893000 0 19059000 6042800 3092500 4875900 1099000 0 2723100 7494 1092 6390 45272;45273;45274;45275;45276;45277;45278;45279;45280;45281;45282 28849;28850;28851;28852 28849 439;1798 4 PTVEELYR Unmodified 1005.5131 0.51311067 553 E9PQK6;B4DDR3;G3V1C3;Q9BZZ5-3;Q9BZZ5-2;Q9BZZ5;Q9BZZ5-5 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS 1 41.664 42.014 2 0.028503 14049 20181213_JW_Orientia_Karp_1_2 95.815 41.658 0 0 0 0 0 0 0 0 0 7495 553 6391 45283 28853 28853 1 PTYQVLNVQEKK 2 Deamidation (NQ) 1447.7559 0.75586013 890 Q53TH8;E9PDM0;Q8IVI9-3;Q8IVI9-2;Q8IVI9;Q8IVI9-4 NOSTRIN Nostrin yes no 0 2 0 1 By matching By matching By MS/MS By matching 1 1 1 1 60.45 60.89 2 0.034122 21017 20181213_JW_Orientia_Karp_3_1 68.847 18.374 10427000 0 0 0 1191900 3975600 0 2322900 2936800 7496 890 6392 45284;45285;45286;45287 28854 28854 1700 0 PVDPILQAFK Unmodified 1126.6386 0.63864553 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 60.609 60.819 2 0.00104 26153 20181213_JW_Orientia_Karp_1_1 119.75 84.939 104140000 71427000 6002000 1234500 0 10964000 14508000 0 0 7497 1266 6393 45288;45289;45290;45291;45292;45293;45294 28855;28856;28857;28858;28859;28860 28855 6 PVDPIVGYR Unmodified 1014.5498 0.54983053 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 45.646 45.821 2 0.039032 16476 20181213_JW_Orientia_Karp_1_1 72.789 18.632 73188000 20805000 25527000 23665000 0 3190600 0 0 0 7498 852 6394 45295;45296;45297;45298 28861;28862 28861 2 PVFELPK Unmodified 828.47454 0.47454032 1430 Karp_02387 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 50.973 51.173 2 0.026322 20004 20181213_JW_Orientia_Karp_1_1 94.262 38.821 27666000 12208000 3442700 0 0 0 12015000 0 0 7499 1430 6395 45299;45300;45301 28863 28863 1 PVGGLTMIDESGQDEK Oxidation (M) 1690.772 0.77198048 1452 Karp_02533 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 43.277 43.615 2 1.1299E-05 14775 20181213_JW_Orientia_Karp_1_2 161.21 108.42 203470000 56948000 56141000 0 14395000 3263100 41262000 21932000 9529300 7500 1452 6396 45302;45303;45304;45305;45306;45307;45308 28864;28865;28866;28867;28868;28869 28865 1061 5 PVGGLTMIDESGQDEK Unmodified 1674.7771 0.77706586 1452 Karp_02533 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.875 51.248 2 1.2405E-37 19879 20181213_JW_Orientia_Karp_1_1 272.59 217.5 324050000 75377000 108950000 86224000 18874000 0 13792000 14207000 6624500 7501 1452 6396 45309;45310;45311;45312;45313;45314;45315 28870;28871;28872;28873;28874;28875;28876 28870 7 PVGSLAGIGEVLGK Unmodified 1295.7449 0.74490152 112 A0A024R5H0;O75531;B2R4V4 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 60.94 61.227 2 2.012E-46 22475 20181213_JW_Orientia_Karp_3_2 268.91 217.38 1278300000 582320000 261640000 221050000 18274000 56231000 60212000 0 78587000 7502 112 6397 45316;45317;45318;45319;45320;45321;45322;45323;45324 28877;28878;28879;28880;28881;28882;28883;28884;28885;28886;28887 28886 11 PVHHGVNQLK Unmodified 1127.62 0.61997578 73 A0A024R2Q4;P61313;B4DLP4;E7EQV9;E7ENU7;B4DEN1;E7EX53;A4D1Q5;P61313-2 RPL15;LOC136321 Ribosomal protein L15;60S ribosomal protein L15 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 14.196 14.484 3 0.0026361 2541 20181213_JW_Orientia_Karp_1_2 98.582 53.943 7907500 4267500 2793600 0 0 0 354130 492240 0 7503 73 6398 45325;45326;45327;45328;45329 28888;28889;28890;28891;28892 28889 5 PVIELAVEPK Unmodified 1093.6383 0.63831118 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.557 53.915 2 6.6243E-05 19586 20181213_JW_Orientia_Karp_2_1 152.11 114.95 646020000 209240000 110330000 118540000 66735000 45364000 92719000 1714500 1387500 7504 1094 6399 45330;45331;45332;45333;45334;45335;45336;45337 28893;28894;28895;28896;28897;28898;28899;28900 28896 8 PVIVEPLEQLDDEDGLPEK Unmodified 2134.0681 0.06814573 1622 Q9BSV4;Q86VG2;P23246;P23246-2;Q6PIX2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 68.475 68.668 2;3 3.2751E-17 27554 20181213_JW_Orientia_Karp_2_3 197.73 160.55 307390000 88705000 34704000 48214000 11588000 31061000 29042000 52621000 11457000 7505 1622 6400 45338;45339;45340;45341;45342;45343;45344;45345;45346;45347;45348;45349;45350;45351;45352 28901;28902;28903;28904;28905;28906;28907;28908 28905 8 PVSNNNPANSEAADSSVEITAHLNELK Deamidation (NQ) 2821.3366 0.33660945 1333 Karp_01373 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 55.211 55.493 3 1.3377E-13 22057 20181213_JW_Orientia_Karp_1_3 153.34 115.21 67163000 26963000 19347000 14124000 0 0 6640100 0 89960 7506 1333 6401 45353;45354;45355;45356;45357 28909;28910;28911;28912 28911 771;772 4 PVSNNNPANSEAADSSVEITAHLNELK Unmodified 2820.3526 0.35259387 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS 1 52.123 52.472 3 0.0019579 20505 20181213_JW_Orientia_Karp_1_2 66.545 38.587 19979000 0 19979000 0 0 0 0 0 0 7507 1333 6401 45358 28913 28913 1 PVSNNNPANSEAADSSVEITAHLNELK 2 Deamidation (NQ) 2822.3206 0.32062504 1333 Karp_01373 yes yes 0 2 0 0 By MS/MS By matching By matching By matching 1 1 1 1 56.793 57.219 3 0.00046201 23456 20181213_JW_Orientia_Karp_1_2 84.674 59.823 17305000 0 6989700 0 2551500 6219300 0 1544700 0 7508 1333 6401 45359;45360;45361;45362 28914 28914 771;772 1 PVSSAASVYAGAGGSGSR Unmodified 1579.759 0.75904803 208 B2RA03;A0A024RAY2;P05783;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 0 0 By matching By MS/MS 1 1 36.211 36.311 2 3.7614E-05 10894 20181213_JW_Orientia_Karp_1_3 172.09 140.74 46164000 31621000 0 14544000 0 0 0 0 0 7509 208 6402 45363;45364 28915 28915 1 PVTALEYTFSR Unmodified 1282.6558 0.65575216 766 C9JXZ1;C9JA36;D3DNF9;P54709-2;P54709 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.511 54.777 2 0.0044004 21992 20181213_JW_Orientia_Karp_1_2 107.83 53.415 66885000 26804000 12844000 19763000 1459900 2147900 3867000 0 0 7510 766 6403 45365;45366;45367;45368;45369;45370 28916;28917 28916 2 PVTTPEEIAQVATISANGDK Deamidation (NQ) 2041.0215 0.021529888 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z4F6;Q53SE2;E7ESH4;B7Z532;E7EXB4;B9VPB4;B9VP19 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 62.718 62.935 3 4.7149E-08 27144 20181213_JW_Orientia_Karp_1_2 162.81 129.5 65533000 25216000 11793000 16134000 534390 6418900 5437200 0 0 7511 81 6404 45371;45372;45373;45374;45375;45376 28918;28919 28919 40 2 PVTVEPMDQLDDEEGLPEK Oxidation (M) 2155.9831 0.98309547 367 A8K525;Q15233-2;Q15233;H7C367 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 52.142 52.442 2 0.015457 20253 20181213_JW_Orientia_Karp_1_3 79.804 44.797 22052000 6774500 4474200 8823400 0 0 0 1980400 0 7512 367 6405 45377;45378;45379;45380 28920;28921;28922 28921 261 3 PVTVEPMDQLDDEEGLPEK Unmodified 2139.9882 0.98818085 367 A8K525;Q15233-2;Q15233;H7C367 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 58.907 59.173 2 0.0066436 24829 20181213_JW_Orientia_Karp_1_2 95.067 55.337 17179000 8975600 7121600 0 1082200 0 0 0 0 7513 367 6405 45381;45382;45383 28923 28923 1 PVVFDILTNGCNFVK Deamidation (NQ) 1722.8651 0.86509301 1076 Karp_00054;Karp_00221;Karp_01819 yes no 0 1 0 0 By MS/MS By matching By matching 1 1 1 73.92 73.936 3 0.03665 34273 20181213_JW_Orientia_Karp_1_1 75.102 12.408 41021000 29553000 3490600 7977200 0 0 0 0 0 7514 1076 6406 45384;45385;45386 28924 28924 1 PVYIPEVELNHK Unmodified 1436.7664 0.76636524 1843 Q59GW5;D3DTY9;Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 49.587 49.837 3 0.020549 19096 20181213_JW_Orientia_Karp_1_1 89.9 65.646 17918000 7231500 0 6290000 4396400 0 0 0 0 7515 1843 6407 45387;45388;45389 28925 28925 0 PWSQHYHQGYY Unmodified 1464.6211 0.62109799 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 32.971 33.415 3 0.031224 9029 20181213_JW_Orientia_Karp_2_3 72.2 52.191 171490000 0 152830000 0 4467400 2023000 3345700 8612500 213120 7516 595 6408 45390;45391;45392;45393;45394;45395 28926;28927 28926 2 PYAVDFQR Unmodified 994.48723 0.48723027 1768 Q04446;Q59ET0 GBE1 1,4-alpha-glucan-branching enzyme yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 42.671 42.961 2 0.01328 14455 20181213_JW_Orientia_Karp_1_2 98.523 55.457 92898000 50566000 18298000 15531000 0 0 1194900 7308200 0 7517 1768 6409 45396;45397;45398;45399;45400 28928;28929 28929 2 PYLEDVIDK Unmodified 1090.5546 0.55464113 1416 Karp_02253 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 52.08 52.432 2 0.00060162 20399 20181213_JW_Orientia_Karp_1_2 154.49 79.445 61403000 0 14464000 13019000 16583000 7443500 9712000 0 181700 7518 1416 6410 45401;45402;45403;45404;45405;45406;45407 28930;28931;28932;28933;28934 28931 5 PYLQQILTCVK Unmodified 1361.7377 0.73770765 1421 Karp_02305 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 59.293 59.581 2 0.00064938 22697 20181213_JW_Orientia_Karp_2_2 134.84 72.298 12219000 0 0 6780000 1005400 2176600 2257300 0 0 7519 1421 6411 45408;45409;45410;45411 28935 28935 1 PYQYPALTPEQK Unmodified 1433.7191 0.7190807 1546 V9HWN7;P04075;J3KPS3;H3BQN4;H3BUH7;H3BR04;H3BMQ8 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.178 46.498 2 2.1794E-16 15576 20181213_JW_Orientia_Karp_2_1 212.28 143 514390000 124970000 87407000 143880000 47723000 28443000 47242000 12048000 22682000 7520 1546 6412 45412;45413;45414;45415;45416;45417;45418;45419 28936;28937;28938;28939;28940;28941;28942;28943;28944;28945;28946 28940 11 QAASSLQQASLK Unmodified 1230.6568 0.65681479 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z4T3;A1XP52 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 32.952 33.227 2 0.012545 9999 20181213_JW_Orientia_Karp_1_1 95.618 58.143 12535000 6784200 0 4529300 0 0 398440 823300 0 7521 721 6413 45420;45421;45422;45423 28947 28947 1 QADVMIVAGTLTNK Unmodified 1459.7705 0.77046434 1406 Karp_02222 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 56.018 56.411 2 0.009955 23401 20181213_JW_Orientia_Karp_1_1 117.93 62.58 24042000 8367400 3332700 9681100 1568400 0 0 589580 502500 7522 1406 6414 45424;45425;45426;45427;45428;45429 28948 28948 1 QAEMEGAVQSIQGELSK Oxidation (M) 1819.8622 0.86219247 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5;Q6NZI2-2 PTRF Polymerase I and transcript release factor yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 1 1 46.471 46.797 2 2.658E-31 15735 20181213_JW_Orientia_Karp_2_2 244 155.85 50429000 49869000 0 0 0 0 0 559790 0 7523 1868 6415 45430;45431;45432 28949;28950 28950 1479 2 QAEMEGAVQSIQGELSK Unmodified 1803.8673 0.86727785 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5;Q6NZI2-2 PTRF Polymerase I and transcript release factor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 54.387 54.702 2 1.3141E-100 21894 20181213_JW_Orientia_Karp_1_2 375.65 236.34 246990000 37110000 127750000 45854000 12456000 12302000 8865400 0 2654100 7524 1868 6415 45433;45434;45435;45436;45437;45438;45439 28951;28952;28953;28954;28955;28956 28952 6 QAHLTNQYMQR Oxidation (M) 1404.6568 0.65683157 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E7ERJ7;B4DQX0;H0YAR2;H0YB86 PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 1 yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 21.566 21.832 3 0.011773 4153 20181213_JW_Orientia_Karp_2_3 88.155 29.563 8873600 661190 0 809770 3542700 1520000 1778200 561900 0 7525 179 6416 45440;45441;45442;45443;45444;45445 28957;28958;28959 28959 138 3 QAHNQQDLEQLLHAK Unmodified 1771.8965 0.89654457 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.505 39.755 3 0.00043076 11721 20181213_JW_Orientia_Karp_2_2 122.1 41.627 227630000 68390000 54054000 51802000 17556000 35827000 0 0 0 7526 1273 6417 45446;45447;45448;45449;45450;45451 28960;28961;28962;28963;28964;28965 28964 6 QAKLMGSAGNATISTVSSTQRK Oxidation (M);2 Deamidation (NQ) 2253.1271 0.12707437 889 F5H638;F5H522;F5GY28;E9PDI6;Q13936-17;Q13936-19;Q13936-35;Q13936-37;Q13936-23;Q13936-22;Q13936-21;Q13936-20;Q13936-12;Q13936-26;Q13936-16;Q13936-15;Q13936-29;Q13936-25;Q13936-32;Q13936-27;Q13936-24;Q13936-13;Q13936-30;Q13936-31;Q13936-28;Q13936-36;Q13936-33;Q13936-14;Q13936-18;Q13936-11;Q13936-7;Q13936-6;Q13936-5;Q13936-4;Q13936-8;Q13936-3;Q13936;Q13936-9;Q13936-10;Q13936-34;Q13936-2 CACNA1C Voltage-dependent L-type calcium channel subunit alpha-1C yes no 0 2 1 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 58.877 59.197 3 0.022809 22511 20181213_JW_Orientia_Karp_2_2 63.056 23.207 41965000 6900500 12432000 0 9890200 12579000 0 162820 0 7527 889 6418 45452;45453;45454;45455;45456 28966 28966 320;1699 510 1 QALGQFAALIIK Unmodified 1271.7602 0.76015765 1227 Karp_00894 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 67.445 67.622 2 0.00023691 30017 20181213_JW_Orientia_Karp_1_2 158.76 79.282 16694000 6200100 1781700 3143400 0 1982100 1196600 0 2389600 7528 1227 6419 45457;45458;45459;45460;45461;45462 28967;28968;28969 28968 3 QALMEQQQR Oxidation (M);4 Deamidation (NQ) 1150.4812 0.48121819 310 Q6PJ79;E7EPJ2;Q8IWI5;Q53TK4;A6H8W8;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 ITSN2 Intersectin-2 yes no 0 4 1 0 By MS/MS 1 25.307 25.656 2 0.038152 5634 20181213_JW_Orientia_Karp_2_1 43.083 19.763 0 0 0 0 0 0 0 0 0 7529 310 6420 45463 28970 28970 1370;1371;1372;1373 1 QAMKQTKLEIQK 3 Deamidation (NQ) 1447.7592 0.75923095 480 Q9P0E1;B7ZL27;B2R9Y2;Q9H0G5 CCDC55;NSRP1 Nuclear speckle splicing regulatory protein 1 yes no 0 3 0 2 By MS/MS By matching By matching By matching 1 1 1 1 60.116 60.441 2 0.042217 25522 20181213_JW_Orientia_Karp_1_2 70.908 14.276 821020000 0 479650000 0 97600000 109520000 134250000 0 0 7530 480 6421 45464;45465;45466;45467 28971 28971 1468;1469;1470 1 QAQDQWLDEQLSIAR 4 Deamidation (NQ) 1803.8163 0.81628814 528 B3KSL3;Q9BRF8 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes no 0 4 0 0 By MS/MS By matching 1 1 65.098 65.174 3 0.0084495 28748 20181213_JW_Orientia_Karp_1_1 93.243 32.343 17631000 13761000 0 0 0 0 3870000 0 0 7531 528 6422 45468;45469 28972 28972 1498;1499;1500;1501 1 QAQEYEALLNIK Unmodified 1418.7405 0.74054442 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1 1 56.599 56.935 2 5.4454E-08 23767 20181213_JW_Orientia_Karp_1_1 206.36 116.31 38297000 16420000 13169000 0 1455400 4002800 2706100 0 543430 7532 208 6423 45470;45471;45472;45473;45474;45475;45476;45477 28973;28974;28975;28976 28973 4 QAQQYQQQRRK 4 Deamidation (NQ) 1464.6957 0.69571949 145 C9JR52;A0A024R778;P21246 PTN Pleiotrophin yes no 0 4 0 2 By MS/MS 1 34.736 34.934 2 0.036597 10239 20181213_JW_Orientia_Karp_1_3 53.775 21.557 0 0 0 0 0 0 0 0 0 7533 145 6424 45478 28977 28977 1303;1304;1305;1306;1307 1 QATYCPFLPVCPETGK Unmodified 1866.8644 0.86444108 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 60.521 60.721 2 0.0061169 21004 20181213_JW_Orientia_Karp_3_1 111.12 72.442 22793000 11425000 7940300 0 0 3427800 0 0 0 7534 1118 6425 45479;45480;45481;45482 28978;28979 28979 2 QAVNNIIQYHR Unmodified 1354.7106 0.7105817 1390 Karp_02139 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 36.318 36.618 3 0.041663 10705 20181213_JW_Orientia_Karp_3_1 57.174 25.015 16413000 3397400 5780600 5411900 0 0 0 1822700 0 7535 1390 6426 45483;45484;45485;45486 28980 28980 1 QAVPLLK Unmodified 767.49052 0.49052473 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 42.18 42.379 2 0.027381 14199 20181213_JW_Orientia_Karp_1_2 108.98 22.471 30403000 23242000 0 3136400 2707500 1316900 0 0 0 7536 1170 6427 45487;45488;45489;45490;45491 28981;28982;28983 28982 3 QAVQILDELAEK Unmodified 1355.7296 0.72964538 1861 Q9UQD4;Q6FGM0;Q99961;Q99961-3;Q99961-2 SH3GL1 Endophilin-A2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 58.686 58.946 2 0.00099971 25027 20181213_JW_Orientia_Karp_1_1 139.32 87.978 38994000 8221800 19870000 0 3636400 3500300 3766200 0 0 7537 1861 6428 45492;45493;45494;45495;45496;45497 28984;28985 28984 2 QDAQILYK Unmodified 977.5182 0.51819605 1590 P12429;D6RA82;D6RFJ9 ANXA3 Annexin A3;Annexin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 44.141 44.441 2 0.011348 14519 20181213_JW_Orientia_Karp_3_1 101.64 22.175 153290000 119880000 0 0 0 0 8225900 25189000 0 7538 1590 6429 45498;45499;45500;45501 28986;28987;28988;28989 28989 4 QDEHGYISR Unmodified 1103.4996 0.49958587 1553 V9HW43;P04792;B4DL87 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 21.866 22.234 2;3 0.0018783 4502 20181213_JW_Orientia_Karp_3_1 99.688 46.599 137820000 6430800 39673000 11155000 26562000 14965000 19470000 11313000 8254300 7539 1553 6430 45502;45503;45504;45505;45506;45507;45508;45509;45510;45511;45512;45513;45514;45515;45516;45517 28990;28991;28992;28993;28994;28995 28994 6 QDGHLWCSTTSNYEQDQK Unmodified 2195.9178 0.91780987 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4;P02751-16 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 37.744 38.102 3 6.0151E-10 12304 20181213_JW_Orientia_Karp_1_1 177.66 150.16 37132000 8364300 5531200 17911000 1184300 0 416660 2991100 733790 7540 85 6431 45518;45519;45520;45521;45522;45523;45524 28996;28997;28998;28999;29000 28996 5 QDGQFSVLFTK Unmodified 1268.6401 0.6401021 797 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 2 59.743 60.047 2 2.3985E-15 24817 20181213_JW_Orientia_Karp_1_1 248.09 163.52 921020000 287920000 115200000 235000000 24129000 105800000 111600000 484720 40881000 + 7541 797 6432 45525;45526;45527;45528;45529;45530;45531;45532;45533;45534;45535;45536;45537;45538;45539 29001;29002;29003;29004;29005;29006;29007;29008;29009;29010;29011;29012;29013;29014 29001 14 QDHPSSMGVYGQESGGFSGPGENR Oxidation (M) 2495.0408 0.040778555 430 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;A9Z0R7;Q71E78;C3UMV4;F1JVV5;C3UMV3;C3UMV2;Q01844-4 EWSR1;EWSR1/ZNF384 fusion;EWSR1/ATF1 fusion RNA-binding protein EWS yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 37.229 37.499 3 0.0019843 10488 20181213_JW_Orientia_Karp_2_2 92.428 67.88 25277000 8410400 0 8163000 0 3335000 2578800 2789700 0 7542 430 6433 45540;45541;45542;45543;45544 29015;29016;29017 29016 287 3 QDHPSSMGVYGQESGGFSGPGENR Unmodified 2479.0459 0.045863933 430 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;A9Z0R7;Q71E78;C3UMV4;F1JVV5;C3UMV3;C3UMV2;Q01844-4 EWSR1;EWSR1/ZNF384 fusion;EWSR1/ATF1 fusion RNA-binding protein EWS yes no 0 0 0 0 By MS/MS By matching 1 1 41.802 42.102 3 0.0036102 13275 20181213_JW_Orientia_Karp_2_1 70.959 55.26 1916300 0 0 0 930770 985560 0 0 0 7543 430 6433 45545;45546 29018 29018 1 QDIAFAYQR Unmodified 1110.5458 0.54580778 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;H0YM50;H0YKS4;B4DNH8;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YKL9;H0YMW4;H0YKV8 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.371 45.664 2 3.8167E-06 15842 20181213_JW_Orientia_Karp_1_3 204.42 128.39 404070000 158200000 136390000 95670000 5685100 1119100 4866800 2141500 0 7544 124 6434 45547;45548;45549;45550;45551;45552;45553;45554 29019;29020;29021;29022;29023;29024 29021 6 QDIIDWINNY Unmodified 1292.6037 0.60371659 1445 Karp_02423 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 77.035 77.018 2 0.00057419 36267 20181213_JW_Orientia_Karp_1_1 132.88 103.21 23721000 11449000 3973600 4011700 0 1391400 661440 2233600 0 7545 1445 6435 45555;45556;45557;45558;45559;45560 29025 29025 1 QDLARLLKEYQELMNVK Oxidation (M);2 Deamidation (NQ) 2108.0824 0.082356006 341;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT6B;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 2 1 2 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 63.894 64.075 4 0.031669 27974 20181213_JW_Orientia_Karp_1_2 51.888 10.54 54105000 18051000 6083800 10812000 0 0 15640000 0 3518400 + 7546 341;793;805 6436 45561;45562;45563;45564;45565 29026 29026 130;1399;1400 1 QDLIHASTEK Unmodified 1140.5775 0.57750184 500 B2RTQ5;Q5VZK9-2;Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A yes no 0 0 0 0 By MS/MS 1 23.976 23.976 2 0.025538 5654 20181213_JW_Orientia_Karp_1_1 91.853 20.941 0 0 0 0 0 0 0 0 0 7547 500 6437 45566 29027 29027 1 QDQLNNKINQIDAR 3 Deamidation (NQ) 1671.8064 0.80639216 1163 Karp_00606 yes yes 0 3 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 74.575 74.603 2 0.011838 34958 20181213_JW_Orientia_Karp_1_2 90.434 39.643 1737000000 752120000 257790000 423660000 0 112510000 6913800 180740000 3228100 7548 1163 6438 45567;45568;45569;45570;45571;45572;45573;45574;45575;45576;45577 29028;29029 29029 552;553;1813;1814;1815 1 QDQLNNKINQIDAR 4 Deamidation (NQ) 1672.7904 0.79040774 1163 Karp_00606 yes yes 0 4 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 75.893 75.885 2 0.0078998 30995 20181213_JW_Orientia_Karp_2_1 113.44 32.69 237840000 58021000 59351000 27259000 8651800 23924000 19561000 41076000 0 7549 1163 6438 45578;45579;45580;45581;45582;45583;45584 29030;29031;29032 29032 552;553;1813;1814;1815 3 QDQNGVLITEVIK Deamidation (NQ) 1456.7773 0.77732386 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 62.473 62.751 2 1.8226E-87 26112 20181213_JW_Orientia_Karp_1_3 307.03 194.32 388210000 69915000 110010000 68810000 4207700 54349000 51566000 8689100 20670000 7550 1107 6439 45585;45586;45587;45588;45589;45590;45591;45592;45593;45594;45595;45596;45597;45598;45599 29033;29034;29035;29036;29037;29038;29039;29040;29041;29042;29043 29037 481 11 QDQNGVLITEVIK Unmodified 1455.7933 0.79330827 1107 Karp_00285 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 58.675 58.968 2 0.031409 24719 20181213_JW_Orientia_Karp_1_2 89.266 13.879 71257000 15917000 15074000 21020000 3649100 7299000 6902000 1395100 0 7551 1107 6439 45600;45601;45602;45603;45604;45605;45606 29044 29044 1 QDQSANEKNKLEMNK Oxidation (M);3 Deamidation (NQ) 1794.7942 0.79417249 560 B4DEL7;X5DNL6;P18505 GABRB1 Gamma-aminobutyric acid receptor subunit beta-1 yes no 0 3 1 2 By MS/MS 1 62.19 62.7 2 0.031782 23396 20181213_JW_Orientia_Karp_3_2 53.237 8.9199 104210000 0 0 0 0 0 0 0 104210000 7552 560 6440 45607 29045 29045 198;199;1513;1514 0 QDVDNASLAR Unmodified 1087.5258 0.52580062 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 30.253 30.602 2 0.0053037 7583 20181213_JW_Orientia_Karp_2_1 101.97 51.271 89719000 34987000 0 33272000 7696800 0 0 13764000 0 7553 1571 6441 45608;45609;45610;45611;45612 29046;29047;29048;29049 29049 4 QDYTSSSQGYQTQIIK Unmodified 1845.8745 0.87447172 1390 Karp_02139 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 44.692 44.941 2 4.0006E-09 15662 20181213_JW_Orientia_Karp_1_2 214.61 150.24 43543000 10117000 13069000 10985000 5508000 0 3864200 0 0 7554 1390 6442 45613;45614;45615;45616;45617 29050 29050 1 QEEEVSSYYVR Unmodified 1387.6256 0.62557424 1069 Karp_00038 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 39.909 40.269 2 0.00022192 12568 20181213_JW_Orientia_Karp_3_1 154.24 90.617 277770000 78728000 62402000 71938000 18809000 0 0 40361000 5534500 7555 1069 6443 45618;45619;45620;45621;45622;45623 29051 29051 1 QEELESTEVGVQGGAFEGTHMGPFVER Oxidation (M) 2935.3294 0.32941558 36 A0A024R0S6;Q9NZN4;B4DLA1;B3KUH4;Q9NZN4-2;B4DU62;B7ZAY3;B4DE23 EHD2 EH domain-containing protein 2 yes no 0 0 1 0 By MS/MS 1 53.621 53.621 3 0.01521 21609 20181213_JW_Orientia_Karp_1_1 82.216 45.471 0 0 0 0 0 0 0 0 0 7556 36 6444 45624 29052 29052 20 1 QEELESTEVGVQGGAFEGTHMGPFVER Deamidation (NQ) 2920.3185 0.31851655 36 A0A024R0S6;Q9NZN4;B4DLA1;B3KUH4;Q9NZN4-2;B4DU62;B7ZAY3;B4DE23 EHD2 EH domain-containing protein 2 yes no 0 1 0 0 By MS/MS 1 58.294 58.493 3 0.023868 24078 20181213_JW_Orientia_Karp_1_3 62.823 39.651 0 0 0 0 0 0 0 0 0 7557 36 6444 45625 29053 29053 1258 1 QEHFQGKRGLDQDVR 2 Deamidation (NQ) 1813.8707 0.87072375 509 B3KN79;Q15646-2;Q15646-3;Q15646 OASL 2'-5'-oligoadenylate synthase-like protein yes no 0 2 0 2 By MS/MS By matching By matching 1 1 1 74.868 74.937 2 0.042874 30804 20181213_JW_Orientia_Karp_2_1 60.691 6.0403 254660000 0 0 0 30870000 219870000 0 0 3916200 7558 509 6445 45626;45627;45628 29054 29054 1485;1486 0 QEIECQNQEYSLLLSIK Unmodified 2094.0303 0.030320436 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 65.224 65.494 2 2.4438E-16 22733 20181213_JW_Orientia_Karp_3_1 196.37 145.89 28913000 0 3248100 0 232390 5935000 4988700 14509000 0 + 7559 1653 6446 45629;45630;45631;45632;45633 29055;29056;29057 29057 3 QEILAALEK Unmodified 1013.5757 0.57571092 22 Q53FJ5;A0A024QZQ2;C9JIZ6;Q59EN5;B1AVU8;P07602;P07602-2;P07602-3;B4DEK5;Q5BJH1 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 50.182 50.452 2 0.011993 17901 20181213_JW_Orientia_Karp_2_3 90.15 42.576 74271000 16912000 15609000 10130000 22830000 0 8789600 0 0 7560 22 6447 45634;45635;45636;45637;45638 29058 29058 1 QEKPSSPSPMPSSTPSPSLNLGNTEEAIR Oxidation (M) 3053.4612 0.46115804 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 1 1 By matching By MS/MS 1 1 48.866 49.446 3 0.011161 16199 20181213_JW_Orientia_Karp_3_2 59.673 35.756 9152700 0 0 0 5399900 0 0 0 3752800 7561 345 6448 45639;45640 29059 29059 234 1 QELQQILSINNSSK Unmodified 1600.842 0.84204938 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 53.942 54.284 2 0.00057781 21575 20181213_JW_Orientia_Karp_1_2 144.51 104.39 36912000 11958000 10647000 11738000 2537100 0 0 0 32694 7562 1320 6449 45641;45642;45643;45644;45645 29060;29061;29062 29061 3 QELQQILSINNSSK Deamidation (NQ) 1601.8261 0.82606496 1320 Karp_01282 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 57.889 58.179 2 0.0015233 23934 20181213_JW_Orientia_Karp_1_3 139.19 86.466 17503000 4650700 7006000 5011100 0 0 0 0 835280 7563 1320 6449 45646;45647;45648;45649 29063;29064 29064 760 2 QEMQEVQSSR Oxidation (M) 1236.5405 0.54046441 191 A0A024RA27;A0A024RA61;P22626-2;P22626;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 0 By MS/MS By matching 1 1 17.602 17.702 2 0.00030612 3240 20181213_JW_Orientia_Karp_1_1 139.15 108.54 725460 419350 0 306110 0 0 0 0 0 7564 191 6450 45650;45651 29065 29065 146 1 QEPTQEHKQEEGQK 2 Deamidation (NQ) 1696.754 0.75402223 462 F5H5S8;E7EP66;B4DY68;B2R6Z8;Q8NEB7 ACRBP Acrosin-binding protein yes no 0 2 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 27.891 28.181 3 0.035792 7506 20181213_JW_Orientia_Karp_1_1 59.294 27.413 36440000 13487000 8108600 9164900 0 0 1135400 4543600 0 7565 462 6451 45652;45653;45654;45655;45656 29066;29067 29066 1456;1457;1458 2 QEQPETFWIQR 3 Deamidation (NQ) 1463.6569 0.65687437 1011 H7C4J6;Q99932;Q99932-3;Q99932-2 SPAG8 Sperm-associated antigen 8 yes no 0 3 0 0 By MS/MS 1 67.119 67.368 2 0.039064 26908 20181213_JW_Orientia_Karp_2_1 63.216 24.434 0 0 0 0 0 0 0 0 0 7566 1011 6452 45657 29068 29068 1762;1763;1764 1 QERRQQQLR 2 Deamidation (NQ) 1242.6429 0.64289606 1977 Q9H9F9 ACTR5 Actin-related protein 5 yes yes 0 2 0 2 By matching By MS/MS By matching By matching 1 1 1 1 68.136 68.249 2 0.019881 27411 20181213_JW_Orientia_Karp_2_1 95.531 6.1759 11519000 6916900 0 0 209190 3048300 1344500 0 0 7567 1977 6453 45658;45659;45660;45661 29069 29069 2087;2088 1 QESLLFDATLGK Unmodified 1320.6925 0.6925316 1317 Karp_01279 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 61.786 62.114 2 0.0015976 26363 20181213_JW_Orientia_Karp_1_3 126.66 69.743 48364000 0 19603000 14893000 0 10513000 0 0 3355500 7568 1317 6454 45662;45663;45664;45665 29070;29071 29070 2 QESQTKSMFVSRALEK Acetyl (Protein N-term);Oxidation (M);2 Deamidation (NQ) 1927.9197 0.91970735 1892 Q86TH5;Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 yes no 1 2 1 2 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 1 1 74.374 74.408 2 0.0018338 27541 20181213_JW_Orientia_Karp_3_1 112.83 17.351 1076700000 131400000 248390000 386330000 22705000 98557000 80258000 27879000 81153000 7569 1892 6455 45666;45667;45668;45669;45670;45671;45672;45673;45674;45675;45676;45677 29072;29073;29074;29075 29074 2028;2029 1490 4 QEVDLQQLIR 2 Deamidation (NQ) 1242.6456 0.6455814 193 H7C3W1;A4FVA8;A4FTY0;A0A024RA58;O60443 DFNA5 Non-syndromic hearing impairment protein 5 yes no 0 2 0 0 By MS/MS 1 68.324 68.324 2 0.025965 30706 20181213_JW_Orientia_Karp_1_1 120.87 22.345 0 0 0 0 0 0 0 0 0 7570 193 6456 45678 29076 29076 1319;1320 1 QEYDESGPSIVHR Unmodified 1515.6954 0.69538514 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q6S8J3;Q96FU6;A5A3E0;Q96DE1;P0CG38;L0R5C4;Q9BYX7;P0CG39;P63261;B4E3A4;B4DVQ0 PS1TP5BP1;ACTB;ACTG1;HEL-176;POTEE;POTEF;POTEI;POTEM;POTEKP;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 34.31 34.631 3 0.00057943 10552 20181213_JW_Orientia_Karp_1_1 158.34 106.41 266350000 87001000 106430000 33827000 9954500 6718000 7596800 14816000 0 7571 1717;1743 6457 45679;45680;45681;45682;45683;45684;45685 29077;29078;29079;29080;29081;29082 29077 6 QEYEQLIAK Unmodified 1120.5764 0.57643921 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 41.752 42.054 2 0.00024363 13545 20181213_JW_Orientia_Karp_2_3 176.44 83.301 610100000 135140000 83412000 59876000 0 74681000 100370000 137150000 19467000 + 7572 1653 6458 45686;45687;45688;45689;45690;45691;45692;45693;45694 29083;29084;29085;29086;29087;29088;29089;29090 29088 8 QFASQANVVGPWIQTK Unmodified 1772.921 0.9209684 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 58.996 59.259 2 9.0819E-05 25234 20181213_JW_Orientia_Karp_1_1 170.74 115.97 39101000 19660000 14660000 0 1852000 2928100 0 0 0 7573 1509 6459 45695;45696;45697;45698;45699 29091;29092;29093 29091 3 QFFDIFVQHLGSNTATK Unmodified 1951.9792 0.97921156 1273 Karp_01100 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 65.385 65.585 3 0.020172 25879 20181213_JW_Orientia_Karp_2_3 57.788 31.006 36395000 0 9772500 15001000 900260 7070000 3650600 0 0 7574 1273 6460 45700;45701;45702;45703;45704 29094 29094 1 QFGAQANVIGPWIQTK Unmodified 1756.9261 0.92605378 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;A1L0V1;H0YJW3;H0YJ11 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 63.175 63.411 2 0.00021642 27097 20181213_JW_Orientia_Karp_1_3 176.99 102.05 25678000 16386000 0 8102200 0 0 0 0 1189500 7575 133 6461 45705;45706;45707;45708 29095;29096;29097 29097 3 QFGFIVLTTSAGIMDHEEAR Unmodified 2221.0838 0.08375299 388 B2R4W8;A8K7H3;P62244 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 67.764 68.05 3 0.026639 29947 20181213_JW_Orientia_Karp_1_3 51.166 22.283 5389100 0 1353200 2920300 0 0 0 0 1115600 7576 388 6462 45709;45710;45711 29098 29098 1 QFLLQFMQEK Unmodified 1310.6693 0.66929373 1201 Karp_00820 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.677 65.893 2 2.1542E-12 22884 20181213_JW_Orientia_Karp_3_1 219.8 108.74 74800000 24215000 18200000 14268000 1654100 0 4544300 11918000 0 7577 1201 6463 45712;45713;45714;45715;45716;45717 29099;29100;29101;29102;29103;29104 29104 6 QFLLQFMQEK Oxidation (M) 1326.6642 0.66420836 1201 Karp_00820 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 2 57.434 57.726 2 0.002815 22067 20181213_JW_Orientia_Karp_2_3 108.43 34.768 68624000 0 28612000 13941000 6779500 7202800 12089000 0 0 7578 1201 6463 45718;45719;45720;45721;45722;45723 29105;29106 29106 767 2 QFLVTLGVSR Unmodified 1118.6448 0.64479354 1108 Karp_00286 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1 58.855 59.136 2 3.9793E-12 22550 20181213_JW_Orientia_Karp_2_1 214.71 131.96 383340000 87657000 50450000 84682000 20013000 59190000 80945000 397190 0 7579 1108 6464 45724;45725;45726;45727;45728;45729;45730;45731 29107;29108;29109;29110;29111;29112;29113;29114 29111 8 QFSNLYVYK Unmodified 1160.5866 0.58660996 1413 Karp_02239 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 47.983 48.328 2 0.026378 17706 20181213_JW_Orientia_Karp_1_2 80.229 15.388 198390000 33622000 61303000 25416000 25853000 13213000 14577000 95816 24305000 7580 1413 6465 45732;45733;45734;45735;45736;45737;45738;45739 29115;29116;29117;29118 29116 4 QFSSSYLSR Unmodified 1073.5142 0.5141733 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 39.068 39.338 2 0.023033 12143 20181213_JW_Orientia_Karp_3_1 82.279 35.285 105840000 22430000 30071000 17175000 0 10135000 0 26025000 0 + 7581 1653 6466 45740;45741;45742;45743;45744 29119 29119 1 QFVTPADVVSGNPK Unmodified 1457.7514 0.75144346 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;B4DG31;H7C4N2;Q14651 PLS3;PLS1 Plastin-3;Plastin-1 yes no 0 0 0 0 By MS/MS By matching 1 1 51.663 51.838 2 0.012019 20438 20181213_JW_Orientia_Karp_1_1 95.018 24.62 31249000 14382000 16867000 0 0 0 0 0 0 7582 623 6467 45745;45746 29120 29120 1 QGAFAYILHTCLCPDINDPMR Deamidation (NQ) 2492.1287 0.12867105 2023 yes no 0 1 0 0 By MS/MS By matching By matching 2 1 1 78.316 78.256 2 0.023493 31854 20181213_JW_Orientia_Karp_2_2 80.905 8.9289 1159700000 0 0 0 0 872550000 286520000 0 599210 + 7583 2023 6468 45747;45748;45749;45750 29121 29121 1240 1 QGANINEIRQMSGAQIK Oxidation (M);2 Deamidation (NQ) 1874.9156 0.91562503 1806 Q53SS8;Q15365 PCBP1 Poly(rC)-binding protein 1 yes no 0 2 1 1 By MS/MS By matching By matching 1 1 1 79.88 79.845 2 0.038014 37560 20181213_JW_Orientia_Karp_1_1 79.283 42.837 11000000 7977100 2303800 0 719460 0 0 0 0 7584 1806 6469 45751;45752;45753 29122 29122 1990;1991 1 QGLLPVLESLK Unmodified 1195.7176 0.71762413 800 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 68.032 68.185 2 0.01028 27261 20181213_JW_Orientia_Karp_2_3 95.483 64.254 11422000 5562600 0 0 0 2462100 1750900 0 1646000 + 7585 800 6470 45754;45755;45756;45757;45758 29123;29124;29125;29126;29127 29125 5 QGVDADINGLR Deamidation (NQ) 1157.5677 0.56766543 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 43.821 44.05 2 0.0011876 14182 20181213_JW_Orientia_Karp_2_2 134.84 92.496 58618000 11616000 10300000 17610000 15206000 3886400 0 0 0 + 7586 1653 6471 45759;45760;45761;45762;45763 29128;29129;29130 29130 1103 3 QGVDADINGLR Unmodified 1156.5836 0.58364985 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 43.643 44.045 2 0.0033749 14323 20181213_JW_Orientia_Karp_2_1 112.11 58.941 37373000 0 0 0 13811000 5578800 5917300 11229000 836650 + 7587 1653 6471 45764;45765;45766;45767;45768 29131;29132;29133 29131 3 QHPVPPPAQNQNQVR Unmodified 1708.8757 0.87574954 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;B4DQR8 ZYX Zyxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.517 24.944 3 1.2817E-37 5754 20181213_JW_Orientia_Karp_1_2 243.85 195.22 25781000 0 7299300 0 6493100 2888500 2943800 3467700 2689000 7588 1812 6472 45769;45770;45771;45772;45773;45774;45775;45776 29134;29135;29136;29137;29138;29139;29140;29141 29135 8 QIEEKMQQLLEEK Oxidation (M);3 Deamidation (NQ) 1663.7862 0.78623356 312 A6NEE1 PLEKHD1 Pleckstrin homology domain-containing family D member 1 yes yes 0 3 1 1 By matching By MS/MS 1 1 35.571 35.845 3 0.042984 10666 20181213_JW_Orientia_Karp_1_3 58.781 11.796 80557000 0 41684000 38873000 0 0 0 0 0 7589 312 6473 45777;45778 29142 29142 1376;1377;1378 1 QIGVTLPTV Unmodified 926.54368 0.54368251 1454 Karp_02591 yes yes 0 0 0 0 By MS/MS 1 69.253 69.253 2 0.019412 31264 20181213_JW_Orientia_Karp_1_1 84.498 49.605 1295400 1295400 0 0 0 0 0 0 0 7590 1454 6474 45779 29143 29143 1 QIIEIINTK Unmodified 1070.6336 0.63356015 1200 Karp_00819 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 1 50.456 50.763 2 0.011711 19105 20181213_JW_Orientia_Karp_1_3 90.709 20.184 104640000 21962000 30234000 15864000 17180000 8577900 8891800 0 1932300 7591 1200 6475 45780;45781;45782;45783;45784;45785;45786;45787 29144;29145;29146 29146 3 QIPIVIGAISK Unmodified 1137.7121 0.71214483 1131 Karp_00376 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.887 60.179 2 0.00045077 22946 20181213_JW_Orientia_Karp_2_2 143.4 71.168 232140000 64068000 40957000 59938000 6225300 29639000 29278000 2037300 0 7592 1131 6476 45788;45789;45790;45791;45792;45793;45794 29147;29148;29149;29150;29151;29152 29151 6 QIQTLKQMNEQLQAENR 4 Deamidation (NQ) 2074.9841 0.98409852 1513 O60237-3 yes yes 0 4 0 1 By MS/MS 1 69.123 69.221 2 0.03089 30801 20181213_JW_Orientia_Karp_1_3 72.29 19.21 4880800 0 0 4880800 0 0 0 0 0 7593 1513 6477 45795 29153 29153 1017;1908;1909;1910 0 QISNLQQSISDAEQR Unmodified 1715.8438 0.84384029 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.498 45.77 2 7.4915E-49 14978 20181213_JW_Orientia_Karp_2_2 299.04 181.79 603610000 89345000 112920000 147150000 60392000 63662000 74446000 0 55689000 + 7594 995;996 6478 45796;45797;45798;45799;45800;45801;45802 29154;29155;29156;29157;29158;29159;29160;29161 29157 8 QISVTFPK Unmodified 918.51747 0.51746776 1396 Karp_02152 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 47.136 47.369 2 0.017742 17051 20181213_JW_Orientia_Karp_1_2 91.318 46.237 106020000 50057000 31461000 14504000 3381100 2076600 4543600 0 0 7595 1396 6479 45803;45804;45805;45806;45807;45808 29162;29163;29164 29162 3 QITLNDLPVGR Unmodified 1224.6826 0.68263561 1008 H7C3T4;V9HW63;Q13162 PRDX4;HEL-S-97n Peroxiredoxin-4 yes no 0 0 0 0 By MS/MS 1 55.001 55.001 2 0.0052177 22506 20181213_JW_Orientia_Karp_1_1 104.42 39.266 9024000 9024000 0 0 0 0 0 0 0 7596 1008 6480 45809 29165 29165 1 QIVHGDQCR Unmodified 1111.5193 0.51927545 1296 Karp_01187 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 14.867 15.154 2 0.011882 2356 20181213_JW_Orientia_Karp_2_3 90.37 53.349 2641800 0 1266500 574260 462650 0 338380 0 0 7597 1296 6481 45810;45811;45812;45813 29166;29167 29167 2 QKCDQQNIIIQNTK 4 Deamidation (NQ) 1733.8142 0.81417965 1765 Q03001-3 DST Dystonin yes yes 0 4 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 55.47 55.748 2 0.0033265 22990 20181213_JW_Orientia_Karp_1_1 119.53 44.995 77864000 31383000 0 0 0 21672000 23832000 0 976800 7598 1765 6482 45814;45815;45816;45817 29168;29169 29168 1150;1966;1967;1968;1969 2 QKMLLDYSVYMGRCVPQESR 2 Oxidation (M);2 Deamidation (NQ) 2493.1338 0.133816 517 Q7L166;Q7Z2T6;Q2YDX6;Q9NWL7;J3KRZ8;B3KR82;Q8IWB9;Q8IWB9-2 TEX2;MST069 Testis-expressed sequence 2 protein yes no 0 2 2 2 By MS/MS 1 77.22 77.269 2 0.0337 36650 20181213_JW_Orientia_Karp_1_2 71.888 24.661 72635000 0 72635000 0 0 0 0 0 0 7599 517 6483 45818 29170 29170 1489;1490 337;338 1 QKMLLDYSVYMGRCVPQESR Oxidation (M);2 Deamidation (NQ) 2477.1389 0.13890138 517 Q7L166;Q7Z2T6;Q2YDX6;Q9NWL7;J3KRZ8;B3KR82;Q8IWB9;Q8IWB9-2 TEX2;MST069 Testis-expressed sequence 2 protein yes no 0 2 1 2 By MS/MS By MS/MS 2 2 79.184 79.083 2 0.010804 32274 20181213_JW_Orientia_Karp_2_3 84.892 50.51 891460000 0 0 473080000 0 0 418380000 0 0 7600 517 6483 45819;45820;45821;45822 29171;29172;29173 29173 1489;1490 337;338 0 QKMLLDYSVYMGRCVPQESR 2 Oxidation (M);Deamidation (NQ) 2492.1498 0.14980042 517 Q7L166;Q7Z2T6;Q2YDX6;Q9NWL7;J3KRZ8;B3KR82;Q8IWB9;Q8IWB9-2 TEX2;MST069 Testis-expressed sequence 2 protein yes no 0 1 2 2 By MS/MS 1 78.367 78.376 2 0.023296 31483 20181213_JW_Orientia_Karp_3_2 66.538 9.1033 0 0 0 0 0 0 0 0 0 7601 517 6483 45823 29174 29174 1489;1490 337;338 1 QKPANVLNDAQTK 2 Deamidation (NQ) 1427.7256 0.72562264 502 E7EVM0;B7Z5N0;B4E154;H0YBY1;Q59GF0;B2RU26;P01266-2;P01266 TG Thyroglobulin yes no 0 2 0 1 By MS/MS 1 41.5 41.949 3 0.0075988 13182 20181213_JW_Orientia_Karp_2_1 93.839 10.702 0 0 0 0 0 0 0 0 0 7602 502 6484 45824 29175 29175 185;1481 1 QLAELSWQLVGLK Unmodified 1483.8399 0.83986454 1329 Karp_01364 yes yes 0 0 0 0 By MS/MS 1 71.049 71.198 2 0.024147 32440 20181213_JW_Orientia_Karp_1_2 94.767 34.278 0 0 0 0 0 0 0 0 0 7603 1329 6485 45825 29176 29176 1 QLEMQNK Oxidation (M);2 Deamidation (NQ) 907.3957 0.39569765 677 H7BYN4;B4E1K0;Q02241-2;Q02241 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 0 2 1 0 By MS/MS By matching 1 1 17.005 17.33 2 0.041523 2913 20181213_JW_Orientia_Karp_1_3 100.07 8.1662 1690800 0 0 1350000 0 0 0 340850 0 7604 677 6486 45826;45827 29177 29177 1572 1 QLEQTLQQFNIKLR 3 Deamidation (NQ) 1760.9309 0.93086439 644 B4DXH2;B4DUZ3;P53365-2;P53365-3;P53365 ARFIP2 Arfaptin-2 yes no 0 3 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 51.657 51.899 2 0.0384 18814 20181213_JW_Orientia_Karp_2_3 67.207 26.098 255610000 74312000 0 94203000 0 42476000 44457000 0 162790 7605 644 6487 45828;45829;45830;45831;45832 29178 29178 1553;1554 0 QLFHPEQLITGK Unmodified 1409.7667 0.76669959 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;F8VVB9;F8VRZ4;F8VS66;F8VWV9;F8VX09;Q6QMJ5;C9JDL2;C9JEV8;C9JQ00;C9JJQ8;C9K0S6;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B7Z1K5;Q13748-2;Q6PEY2;Q8N532;C9J2C0;Q9NY65-2;Q9NY65;F8VQQ4;Q7Z3M3 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA1;TUBA8;TUBA2;TUBA3C;TUBA3E;DKFZp686L04275 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 50.284 50.534 2;3 0.0004156 19146 20181213_JW_Orientia_Karp_1_2 152.69 0 512220000 168920000 127120000 57820000 93756000 24022000 40587000 0 0 7606 512;1887 6488 45833;45834;45835;45836;45837;45838;45839;45840;45841;45842;45843;45844;45845;45846 29179;29180;29181;29182;29183 29180 5 QLLLESQSQLDAAK Unmodified 1542.8253 0.82533668 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 50.371 50.687 2 0.0090768 19053 20181213_JW_Orientia_Karp_1_3 99.669 52.441 43767000 14051000 10349000 10846000 0 2043000 1846100 2885500 1745700 7607 279 6489 45847;45848;45849;45850;45851;45852;45853 29184;29185 29185 1 QLLQANPILEAFGNAK Unmodified 1725.9414 0.94136949 47;919 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4;M0QY43 MYH9;MYH14 Myosin-9;Myosin-14 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 71.148 71.267 2 5.9749E-20 32675 20181213_JW_Orientia_Karp_1_1 220.53 148.1 185070000 37565000 29140000 78227000 3295800 5579500 3322400 22948000 4988300 7608 47;919 6490 45854;45855;45856;45857;45858;45859;45860;45861 29186;29187;29188;29189 29186 4 QLLQANPILEAFGNAK Deamidation (NQ) 1726.9254 0.92538508 47;919 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4;M0QY43 MYH9;MYH14 Myosin-9;Myosin-14 no no 0 1 0 0 By MS/MS 1 72.788 72.897 2 0.0062124 29456 20181213_JW_Orientia_Karp_3_2 132.5 86.849 0 0 0 0 0 0 0 0 0 7609 47;919 6490 45862 29190 29190 21 1 QLLSDLANLSK Unmodified 1200.6714 0.67140222 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 59.148 59.398 2 0.0064962 22764 20181213_JW_Orientia_Karp_2_1 112.13 32.655 50398000 6667400 11820000 14009000 5678800 5622800 6600900 0 0 7610 1428 6491 45863;45864;45865;45866;45867;45868 29191;29192;29193;29194;29195 29194 5 QLLTLSSELSQAR Unmodified 1444.7886 0.78855725 457 E7EQR4;Q6NUR7;B2R6J2;P15311;B7Z437;B7Z5V2;B7Z9R6 EZR Ezrin yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 55.691 56.017 2 3.5177E-05 19530 20181213_JW_Orientia_Karp_3_2 173.72 121 39565000 11626000 8585600 12456000 2049900 4134000 0 0 714340 7611 457 6492 45869;45870;45871;45872;45873;45874 29196;29197 29197 2 QLMETPANEMTPTR 2 Oxidation (M) 1649.7389 0.73890622 1639 V9HW38;P28838-2;P28838;H0Y9Q1 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 2 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 32.423 32.756 2 0.0065648 9224 20181213_JW_Orientia_Karp_1_3 98.105 34.822 14573000 4018400 2735800 3748700 914910 0 561170 2594000 0 7612 1639 6493 45875;45876;45877;45878;45879;45880;45881 29198;29199;29200;29201 29199 1264;1265 4 QLQIQQLIAVYR Unmodified 1471.8511 0.85109792 1416 Karp_02253 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 66.991 67.191 2 0.037049 23527 20181213_JW_Orientia_Karp_3_1 75.378 57.569 12822000 5049000 2532200 2634500 746730 0 1636700 222810 0 7613 1416 6494 45882;45883;45884;45885;45886;45887 29202;29203 29203 1 QLQKMVHDIKNNEGGIMNK 2 Deamidation (NQ) 2198.0824 0.082372781 510 Q2MD44;Q2MD42;Q2MD51;K7EKR2;Q2MD40;Q2MD48;Q2MD57;Q2MD47;Q2MD58;Q2MD46;Q2MD56;Q2MD59;Q2MD54;Q2MD50;F5GXS1;Q2MD52;B3KNL5;Q8WV28-3;Q8WV28-2;Q8WV28 BASH;BLNK B-cell linker protein yes no 0 2 0 2 By MS/MS 1 68.924 69.172 2 0.040072 27868 20181213_JW_Orientia_Karp_2_1 68.515 19.092 1052100 0 0 0 1052100 0 0 0 0 7614 510 6495 45888 29204 29204 1487;1488 0 QLQLQESGPGLVK Acetyl (Protein N-term);2 Deamidation (NQ) 1439.7508 0.75077476 269 A0A068LKQ2;A0A068LKQ4;A0A068LL56 yes no 1 2 0 0 By MS/MS 1 35.025 35.276 2 0.034832 9359 20181213_JW_Orientia_Karp_2_2 60.102 10.684 0 0 0 0 0 0 0 0 0 7615 269 6496 45889 29205 29205 1352;1353 1 QLQPLLGQSQNILTK Unmodified 1679.957 0.95701956 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 57.834 58.135 2 0.002176 24611 20181213_JW_Orientia_Karp_1_1 122.46 89.402 41205000 16049000 5024600 6517200 3755200 5190700 3076000 0 1592100 7616 1188 6497 45890;45891;45892;45893;45894;45895;45896 29206;29207;29208 29206 3 QLQPRAELLQDICR 2 Deamidation (NQ) 1740.8829 0.88286834 1820 Q2NL98 VMAC Vimentin-type intermediate filament-associated coiled-coil protein yes yes 0 2 0 1 By MS/MS 1 57.844 58.096 3 0.041308 21905 20181213_JW_Orientia_Karp_2_2 56.286 18.933 0 0 0 0 0 0 0 0 0 7617 1820 6498 45897 29209 29209 1996;1997;1998 1 QLSDYDNPQIIQLK Unmodified 1673.8625 0.86245047 1269 Karp_01077 yes yes 0 0 0 0 By MS/MS 1 58.29 58.29 2 0.031225 24605 20181213_JW_Orientia_Karp_1_1 77.288 0 45213000 45213000 0 0 0 0 0 0 0 7618 1269 6499 45898 29210 29210 1 QLSEVENNIKK Deamidation (NQ) 1301.6827 0.68269519 1819 Q17RS7 GEN1 Flap endonuclease GEN homolog 1 yes yes 0 1 0 1 By MS/MS 1 50.048 50.658 2 0.024754 17088 20181213_JW_Orientia_Karp_3_2 89.029 26.921 0 0 0 0 0 0 0 0 0 7619 1819 6500 45899 29211 29211 1167 1 QLSPILEQISEELSDK Unmodified 1827.9466 0.94657403 1445 Karp_02423 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 73.52 73.529 2;3 0.00098497 27302 20181213_JW_Orientia_Karp_3_1 135.57 82.778 87584000 33709000 4956300 31117000 0 0 4846900 12955000 0 7620 1445 6501 45900;45901;45902;45903;45904 29212;29213 29213 2 QLSSGVSEIR Unmodified 1074.5669 0.56693715 1553 V9HW43;P04792;B4DL87;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.055 35.412 2 6.7559E-05 10434 20181213_JW_Orientia_Karp_1_3 151.83 75.348 617720000 186850000 105090000 94566000 18441000 61171000 21577000 72394000 57641000 7621 1553 6502 45905;45906;45907;45908;45909;45910;45911;45912 29214;29215;29216;29217;29218;29219;29220;29221 29216 8 QLSSIVEMMNK Oxidation (M) 1294.6261 0.62610829 1319 Karp_01281 yes yes 0 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 47.165 47.528 2 0.02581 17475 20181213_JW_Orientia_Karp_1_1 78.939 32.81 14114000 9417600 0 0 2170500 0 1701300 824580 0 7622 1319 6503 45913;45914;45915;45916 29222 29222 881 1 QMEKIQPALQEKHAMK Oxidation (M);Deamidation (NQ) 1925.9703 0.97030314 1955 Q99471;H3BMQ1;H3BPF6;Q99471-3 PFDN5 Prefoldin subunit 5 yes no 0 1 1 2 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 48.565 48.911 2 0.0060182 18278 20181213_JW_Orientia_Karp_1_1 105.66 34.975 194450000 71041000 46052000 45549000 8739200 8650500 6053900 164420 8196600 7623 1955 6504 45917;45918;45919;45920;45921;45922;45923;45924 29223;29224 29223 2074;2075;2076 1514 1 QMEKIQPALQEKHAMK Oxidation (M);2 Deamidation (NQ) 1926.9543 0.95431872 1955 Q99471;H3BMQ1;H3BPF6;Q99471-3 PFDN5 Prefoldin subunit 5 yes no 0 2 1 2 By matching By MS/MS By matching 1 1 1 50.967 51.15 2 0.02627 19564 20181213_JW_Orientia_Karp_1_2 70.54 12.029 35175000 15710000 16727000 2738000 0 0 0 0 0 7624 1955 6504 45925;45926;45927 29225 29225 2074;2075;2076 1514 0 QMEQISQFLQAAER Oxidation (M) 1693.8094 0.80936904 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 2 57.282 57.63 2;3 2.6384E-46 20161 20181213_JW_Orientia_Karp_3_1 267.37 179.23 190210000 25235000 24896000 26885000 34573000 31268000 30122000 2771800 14457000 7625 1662 6505 45928;45929;45930;45931;45932;45933;45934;45935;45936;45937;45938;45939;45940 29226;29227;29228;29229;29230;29231;29232 29231 1288 7 QMHNELGYEPTASEIAEK Oxidation (M) 2061.9313 0.93133467 1398 Karp_02184 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 40.367 40.692 3 0.0012599 13120 20181213_JW_Orientia_Karp_1_3 111.11 70.87 106470000 34797000 0 27163000 9286100 0 0 35222000 0 7626 1398 6506 45941;45942;45943;45944 29233;29234;29235 29233 1005 3 QMLELADVDK Unmodified 1160.5747 0.57472465 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 51.691 51.961 2 0.019112 20451 20181213_JW_Orientia_Karp_1_1 84.615 14.987 12980000 8591900 0 4200500 0 0 0 0 187610 7627 1170 6507 45945;45946;45947 29236 29236 1 QMLEMEQQQSR 2 Oxidation (M) 1438.6181 0.6180628 1337 Karp_01411 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 21.83 22.196 2 4.0768E-06 3453 20181213_JW_Orientia_Karp_3_2 176.95 83.299 22538000 5271100 6404500 0 1853900 2613700 1586700 3198900 1608800 7628 1337 6508 45948;45949;45950;45951;45952;45953;45954 29237;29238;29239;29240;29241;29242;29243;29244;29245 29245 899;900 9 QMLEMEQQQSR Oxidation (M) 1422.6231 0.62314818 1337 Karp_01411 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 1 2 1 2 1 1 28.702 28.982 2 1.6681E-18 7479 20181213_JW_Orientia_Karp_1_1 234.67 146.3 27150000 11707000 2899800 8161600 1917800 1321900 649580 492510 0 7629 1337 6508 45955;45956;45957;45958;45959;45960;45961;45962;45963;45964 29246;29247;29248;29249;29250 29246 899;900 5 QMQVLLAQVQNSEQLLR 4 Deamidation (NQ) 2001.0089 0.0088567119 523 Q49AT6;B4DHR0;B3KRW4;Q9H5N1 RABEP2 Rab GTPase-binding effector protein 2 yes no 0 4 0 0 By matching By MS/MS By matching By matching 1 1 1 1 65.672 65.948 3 0.02845 25688 20181213_JW_Orientia_Karp_2_2 68.944 18.006 41652000 0 0 0 2383400 12513000 8928800 17826000 0 7630 523 6509 45965;45966;45967;45968 29251 29251 1494;1495;1496;1497 1 QMSSQNSPSRLNIQPAK Oxidation (M);2 Deamidation (NQ) 1902.9105 0.91053965 339 B5MCN7;A8K1V4;Q15788-2;Q15788-3;Q15788 NCOA1 Nuclear receptor coactivator 1 yes no 0 2 1 1 By MS/MS 1 56.175 56.175 3 0.04226 23235 20181213_JW_Orientia_Karp_1_1 48.351 20.382 0 0 0 0 0 0 0 0 0 7631 339 6510 45969 29252 29252 1396 1 QMTIQALQDELR Acetyl (Protein N-term);2 Deamidation (NQ) 1488.713 0.71300904 567 B4DG07 yes yes 1 2 0 0 By matching By matching By matching By MS/MS 1 1 1 1 25.744 26.097 3 0.03752 5030 20181213_JW_Orientia_Karp_3_2 46.706 7.1258 47117000 44659000 0 0 610410 0 1269400 0 578780 7632 567 6511 45970;45971;45972;45973 29253 29253 1519;1520 0 QMVSGAK Oxidation (M);Deamidation (NQ) 736.34254 0.34253987 1951 Q96Q06;Q96Q06-2 PLIN4 Perilipin-4 yes no 0 1 1 0 By matching By MS/MS By matching By matching 1 1 1 1 40.558 40.822 1 0.03717 13452 20181213_JW_Orientia_Karp_1_2 40.573 40.573 48663000 25328000 17339000 3231200 0 0 0 0 2765500 7633 1951 6512 45974;45975;45976;45977 29254 29254 2072 1 QNFESTAIVFDDSK Unmodified 1599.7417 0.74166663 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 55.417 55.762 2 7.9831E-35 22255 20181213_JW_Orientia_Karp_1_3 249.69 190.43 189570000 42681000 59101000 39305000 11421000 20682000 14596000 0 1787600 7634 1395 6513 45978;45979;45980;45981;45982;45983;45984;45985 29255;29256;29257;29258;29259;29260 29257 6 QNGERVNHVNLPPWAR 3 Deamidation (NQ) 1888.918 0.91800829 1958 Q99698 LYST Lysosomal-trafficking regulator yes yes 0 3 0 1 By matching By matching By matching By MS/MS 1 1 1 1 41.501 41.813 3 0.032327 13046 20181213_JW_Orientia_Karp_3_1 56.569 9.823 141080000 0 0 22230000 0 18934000 33414000 66506000 0 7635 1958 6514 45986;45987;45988;45989 29261 29261 1210;1211;2077 0 QNLLSQSHAYQQFLR Unmodified 1831.9329 0.93293007 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 50.324 50.507 3 0.029639 19129 20181213_JW_Orientia_Karp_1_2 54.094 29.212 20122000 7154400 5181300 7786100 0 0 0 0 0 7636 506 6515 45990;45991;45992 29262 29262 1 QNMSLQFIALMK Oxidation (M);Deamidation (NQ) 1439.7153 0.71525765 1379 Karp_02116 yes yes 0 1 1 0 By matching By matching By MS/MS 1 1 1 22.425 22.675 4 0.040406 4550 20181213_JW_Orientia_Karp_2_3 45.653 12.565 2394200 0 823360 0 1091500 0 479300 0 0 7637 1379 6516 45993;45994;45995 29263 29263 1859 0 QNRDQKCPVSQR 3 Deamidation (NQ) 1517.6893 0.68925391 1808 Q15555-3 yes yes 0 3 0 2 By MS/MS 1 25.776 26.026 3 0.035534 6243 20181213_JW_Orientia_Karp_1_2 54.005 14.425 0 0 0 0 0 0 0 0 0 7638 1808 6517 45996 29264 29264 1992;1993 1 QNSDMTQDMKFIIK Acetyl (Protein N-term);2 Deamidation (NQ) 1741.7903 0.79027308 1471 L8EC46 APP yes yes 1 2 0 1 By matching By MS/MS 1 1 70.05 70.125 2 0.0090609 31612 20181213_JW_Orientia_Karp_1_2 93.442 44.84 29116000 20954000 8162500 0 0 0 0 0 0 7639 1471 6518 45997;45998 29265 29265 998;1888 1 QPDGLLRKGLGQR Deamidation (NQ) 1437.8052 0.80521036 1500 O15049 N4BP3 NEDD4-binding protein 3 yes yes 0 1 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 36.762 37.095 2 0.0072478 11346 20181213_JW_Orientia_Karp_1_2 137.05 71.768 190000000 53497000 57046000 63493000 4639400 2205900 0 9117300 0 7640 1500 6519 45999;46000;46001;46002;46003;46004 29266;29267;29268;29269 29267 1904 4 QPFTVNSMSGFGMNR 2 Oxidation (M);2 Deamidation (NQ) 1705.7076 0.70760609 220 F8VQD8;F8VUB4;F8VP97;F8VV52;B3KTL6;B2RDX7;A0A024RBD8;Q9NZN8-2;Q9NZN8-4;Q9NZN8-5;Q9NZN8 CNOT2 CCR4-NOT transcription complex subunit 2 yes no 0 2 2 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 55.844 56.224 2 0.010096 20984 20181213_JW_Orientia_Karp_2_1 75.416 32.108 949030000 311560000 217780000 0 153170000 104420000 98611000 56536000 6949700 7641 220 6520 46005;46006;46007;46008;46009;46010;46011 29270;29271;29272 29270 85;1329 168;169 3 QPPVSPGTALVGSQK Unmodified 1464.7936 0.79364262 247 B4DWA0;A0A024RCT9;P17096;P17096-3 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 43.648 43.978 2 0.031509 15500 20181213_JW_Orientia_Karp_1_1 75.89 42.891 176690000 57574000 28784000 65019000 6093000 4417300 0 12243000 2564300 7642 247 6521 46012;46013;46014;46015;46016;46017;46018 29273 29273 1 QPSWDPSPVSSTVPAPSPLSAAAVSPSK Unmodified 2746.3814 0.3813748 946 Q53R94;Q6IPN0;F8W914;Q9NQC3-2;Q9NQC3-5;Q9NQC3 RTN4 Reticulon;Reticulon-4 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 66.431 66.547 3 0.023865 29146 20181213_JW_Orientia_Karp_1_3 43.684 20.148 23972000 11315000 5641000 7015200 0 0 0 0 0 7643 946 6522 46019;46020;46021 29274;29275 29275 2 QPYAVSELAGHQTSAESWGTGR Unmodified 2331.088 0.087986745 1660 Q59GY2;P36578;B4DMJ6;H3BU31;B4DFI6;Q53G74;B4DP82;H3BTP7 RPL4 60S ribosomal protein L4 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 47.284 47.554 3 0.025657 17412 20181213_JW_Orientia_Karp_1_1 65.765 48.2 58150000 18374000 21617000 14984000 0 2541400 0 634540 0 7644 1660 6523 46022;46023;46024;46025;46026 29276;29277;29278;29279 29276 4 QQDPLVYKAIQQGINAVNQEAMNNAQRIEK Oxidation (M);3 Deamidation (NQ) 3429.6834 0.68344683 665 B4DYU1;Q5FVE4-4;Q5FVE4-3;Q5FVE4-2;Q5FVE4 ACSBG2 Long-chain-fatty-acid--CoA ligase ACSBG2 yes no 0 3 1 2 By MS/MS By matching 1 1 71.802 71.951 3 0.031548 33068 20181213_JW_Orientia_Karp_1_2 44.164 8.9175 10736000 0 9013600 0 1722900 0 0 0 0 7645 665 6524 46027;46028 29280 29280 230;1567;1568;1569;1570 1 QQDPPCQTELSNIQKRQGVK 4 Deamidation (NQ) 2357.1169 0.11690361 566 B4DI52;B4DFW5;Q9BQ16-7;Q9BQ16-5;Q9BQ16-6;Q9BQ16-4;Q9BQ16-8;Q9BQ16-1;Q9BQ16 SPOCK3 Testican-3 yes no 0 4 0 2 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 2 76.117 76.102 2 0.013334 35443 20181213_JW_Orientia_Karp_1_3 71.806 23.274 934220000 254620000 0 325170000 94457000 0 92959000 167010000 0 7646 566 6525 46029;46030;46031;46032;46033;46034;46035 29281;29282 29282 1515;1516;1517;1518 2 QQEQEEREREEQR 4 Deamidation (NQ) 1776.7398 0.73982873 86 B8ZZS4;A0A024R464;Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 yes no 0 4 0 2 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 49.792 50.137 2 0.021091 17574 20181213_JW_Orientia_Karp_2_2 73.887 23.101 113330000 11724000 13997000 11433000 24541000 25248000 16359000 1974800 8052400 7647 86 6526 46036;46037;46038;46039;46040;46041;46042;46043 29283 29283 1287;1288;1289;1290 1 QQEQLHLQLLTQQQAGK 4 Deamidation (NQ) 1993.9956 0.99564949 736 B7ZBM3;Q8IVH2-3;Q8IVH2-2;Q8IVH2 FOXP4 Forkhead box protein P4 yes no 0 4 0 0 By MS/MS By matching 1 1 72.293 72.342 3 0.042439 33317 20181213_JW_Orientia_Karp_1_1 58.814 7.0868 14659000 13334000 0 1324500 0 0 0 0 0 7648 736 6527 46044;46045 29284 29284 1614;1615;1616;1617;1618;1619 1 QQGQEEQVQEAK 3 Deamidation (NQ) 1403.6052 0.60523273 544 B3KX39;H0YBS0;P16157-11;P16157-9;P16157-6;P16157-7;P16157-4;P16157-13;P16157-10;P16157-15;P16157-8;P16157-5;P16157-16;P16157-3;P16157;P16157-21;P16157-12;P16157-14 ANK1 Ankyrin-1 yes no 0 3 0 0 By MS/MS By matching 1 1 19.423 19.548 4 0.034481 3847 20181213_JW_Orientia_Karp_1_1 43.544 6.4791 497040 195140 301900 0 0 0 0 0 0 7649 544 6528 46046;46047 29285 29285 1507;1508;1509;1510 0 QQKKAQIR 2 Deamidation (NQ) 1000.5665 0.56654322 707 Q5T6F6;F1DAM0;F1D8R8;B6ZGU8;Q13285 NR5A1 Steroidogenic factor 1 yes no 0 2 0 2 By MS/MS 1 73.386 73.386 2 0.032304 33888 20181213_JW_Orientia_Karp_1_1 114.72 13.394 0 0 0 0 0 0 0 0 0 7650 707 6529 46048 29286 29286 1595;1596 1 QQLDEQILLLQHSK 3 Deamidation (NQ) 1694.8727 0.87268081 40 A0A024R152;Q9Y2D5-6;Q9Y2D5-4;C9JZH4;C9JA33;B1ALY0;Q8IXS6;Q8IXS6-2 hCG_28765;AKAP2;PALM2;PALM2-AKAP2 A-kinase anchor protein 2;Paralemmin-2 yes no 0 3 0 0 By MS/MS By matching 1 1 40.267 40.442 2 0.029441 12874 20181213_JW_Orientia_Karp_1_3 94.309 21.875 91277000 0 0 89333000 0 1943500 0 0 0 7651 40 6530 46049;46050 29287 29287 1260;1261;1262;1263 1 QQLEQLQRLMEEQEK 3 Deamidation (NQ) 1931.9146 0.91462198 394 Q569I1;Q2KHM5;A8K8P1;Q5JPD5;Q9HC77 CENPJ Centromere protein J yes no 0 3 0 1 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 43.386 43.73 2 0.022132 14137 20181213_JW_Orientia_Karp_2_1 86.898 37.95 474760000 97998000 65593000 123560000 58827000 0 44364000 69665000 14754000 7652 394 6531 46051;46052;46053;46054;46055;46056;46057 29288;29289 29289 1423;1424;1425 2 QQLMREQMQEQER Oxidation (M);4 Deamidation (NQ) 1752.7295 0.72946374 370 C9K0S7;Q8WYR3;C9J845;C9JBI8;B4DNC7;A8K5K3;O75030-12;O75030-4;O75030-3;O75030-8;O75030-7;O75030-6;O75030-2;O75030-5;O75030 MITF;MITF-C Microphthalmia-associated transcription factor yes no 0 4 1 1 By MS/MS 1 63.85 63.949 2 0.03188 27501 20181213_JW_Orientia_Karp_1_3 52.167 6.9102 0 0 0 0 0 0 0 0 0 7653 370 6532 46058 29290 29290 1411;1412;1413;1417;1418 1 QQLQEQPLK 3 Deamidation (NQ) 1113.5554 0.55536941 1901 Q8IV76-2;Q8IV76 PASD1 PAS domain-containing protein 1 yes no 0 3 0 0 By MS/MS By matching By matching By matching 1 1 1 1 27.751 28.065 3 0.040811 7348 20181213_JW_Orientia_Karp_1_1 71.501 18.785 6465700 2064600 0 2738100 1128400 0 0 0 534480 7654 1901 6533 46059;46060;46061;46062 29291 29291 2037;2038;2039 0 QQMDLARQQQEQIAR Oxidation (M);4 Deamidation (NQ) 1861.8476 0.84760504 1656 P35712-4;P35712-2;P35712-3;P35712 SOX6 Transcription factor SOX-6 yes no 0 4 1 1 By MS/MS 1 66.294 66.704 2 0.023618 25819 20181213_JW_Orientia_Karp_3_2 61.593 13.405 0 0 0 0 0 0 0 0 0 7655 1656 6534 46063 29292 29292 1943;1944;1945;1946;1947;1948 1279 1 QQNEMEILTAQLTEKDSDLQKWR 3 Deamidation (NQ) 2806.3331 0.33310398 833 D3DR32;Q96Q89-5;Q96Q89-4;Q96Q89-3;Q96Q89;Q96Q89-2 MPHOSPH1;KIF20B Kinesin-like protein;Kinesin-like protein KIF20B yes no 0 3 0 2 By MS/MS 1 49.319 49.319 4 0.031138 18725 20181213_JW_Orientia_Karp_1_1 41.521 10.87 80980000 80980000 0 0 0 0 0 0 0 7656 833 6535 46064 29293 29293 1669;1670;1671;1672 1 QQQEAAETIR 2 Deamidation (NQ) 1174.5466 0.54659564 892 F8W9J4;E9PEB9;Q03001;Q9HDA7;E7ERU0;E9PHM6;Q03001-8 DST;CATX-15 Dystonin yes no 0 2 0 0 By matching By matching By MS/MS 1 1 1 35.108 35.645 2 0.02936 9555 20181213_JW_Orientia_Karp_3_2 78.334 33.174 11814000 0 1723600 0 0 0 0 2683100 7407500 7657 892 6536 46065;46066;46067 29294 29294 1703;1704 0 QQQIYQELTDLK 2 Deamidation (NQ) 1507.7406 0.740604 611 B4DNV9;M0QZ42;H7BXU4;B4E2Z5;H7BXE2;Q2TB20;E7ENS9;Q9H2X3-10;Q9H2X3-6;Q9H2X3-2;Q9H2X3-9;Q9H2X3-3;Q9H2X3-8;Q9H2X3 CLEC4M C-type lectin domain family 4 member M yes no 0 2 0 0 By MS/MS 1 43.647 43.798 2 0.021386 13962 20181213_JW_Orientia_Karp_2_2 120.63 46.789 0 0 0 0 0 0 0 0 0 7658 611 6537 46068 29295 29295 1539;1540;1541 1 QQREQRFLPEEEEK 3 Deamidation (NQ) 1847.8537 0.85373628 1774 Q07283 TCHH Trichohyalin yes yes 0 3 0 2 By MS/MS 1 65.388 65.798 2 0.033367 25252 20181213_JW_Orientia_Karp_3_2 62.633 7.7619 0 0 0 0 0 0 0 0 0 7659 1774 6538 46069 29296 29296 1971;1972;1973 1 QQYESVAAK Unmodified 1022.5033 0.50327426 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.366 24.699 2 0.0031043 5973 20181213_JW_Orientia_Karp_1_1 113.26 39.001 103770000 11216000 27252000 24486000 6981700 8793200 3399700 14838000 6799900 7660 1571 6539 46070;46071;46072;46073;46074;46075;46076;46077 29297;29298;29299;29300;29301;29302;29303;29304 29297 8 QRDEQLRALQER 3 Deamidation (NQ) 1543.759 0.75904803 1022 I6L969;Q8IZ48;J3KPL7;K7ENL6;Q8TES7-2;Q8TES7-5;Q8TES7;Q8TES7-6 FBF1 Fas-binding factor 1 yes no 0 3 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 49.137 49.444 2 0.03893 18313 20181213_JW_Orientia_Karp_1_2 72.325 17.011 224930000 55003000 70896000 60080000 16946000 9259400 12425000 321550 0 7661 1022 6540 46078;46079;46080;46081;46082;46083;46084 29305;29306 29305 1767;1768;1769 2 QRNGVMPSHFSR Oxidation (M);Deamidation (NQ) 1431.6677 0.6677306 433 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 RPS19 40S ribosomal protein S19 yes no 0 1 1 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 21.216 21.542 4 0.023563 4440 20181213_JW_Orientia_Karp_1_2 64.945 23.727 8022300 0 3730500 602570 1547800 433150 1484500 223850 0 7662 433 6541 46085;46086;46087;46088;46089;46090 29307 29307 168 289 1 QSINMGSPK Unmodified 960.46987 0.46986564 2057 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 2 2 24.055 24.436 2 0.0034221 5088 20181213_JW_Orientia_Karp_2_1 111.74 37.324 63543000 3021900 12096000 0 13529000 5092600 7735000 10609000 11461000 + 7663 2057 6542 46091;46092;46093;46094;46095;46096;46097;46098;46099;46100;46101;46102;46103 29308;29309;29310;29311;29312;29313 29310 6 QSLEASLAETEGR Unmodified 1389.6736 0.67358707 798;791 CON__P02535-1;CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 44.026 44.443 2 7.6185E-05 15380 20181213_JW_Orientia_Karp_1_2 166.24 109.69 81827000 0 45524000 0 0 0 9741900 26560000 0 + 7664 791;798 6543 46104;46105;46106;46107 29314;29315;29316 29315 3 QSLIQNNDLK Unmodified 1171.6197 0.619701 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS 1 37.976 38.326 2 0.00038049 12002 20181213_JW_Orientia_Karp_1_2 170.5 108.39 0 0 0 0 0 0 0 0 0 7665 1396 6544 46108 29317 29317 1 QSQINIAEAGK Unmodified 1157.6041 0.60405094 1104 Karp_00281 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 34.778 35.079 2 0.0010344 10400 20181213_JW_Orientia_Karp_1_2 128.88 74.269 13762000 5975300 4967300 0 0 1518300 632740 667900 0 7666 1104 6545 46109;46110;46111;46112;46113 29318;29319 29319 2 QSSYGQHGSGSSQSSGYGQYGSR Unmodified 2350.9799 0.97989286 817 CON__Q5D862;Q5D862 FLG2 Filaggrin-2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 25.057 25.257 3 0.030518 5902 20181213_JW_Orientia_Karp_1_2 62.781 41.422 9009600 2609500 1124200 2972700 0 2303200 0 0 0 + 7667 817 6546 46114;46115;46116;46117;46118 29320;29321;29322 29321 3 QSVEADINGLR Deamidation (NQ) 1201.5939 0.59388018 798;791;277 CON__P02535-1;CON__Q2M2I5;Q2M2I5;CON__P13645;P13645;CON__P13646-1;A8K2H9;A1A4E9 KRT24;KRT10;KRT13 Keratin, type I cytoskeletal 24;Keratin, type I cytoskeletal 10 no no 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 42.614 42.956 2 0.0068621 14994 20181213_JW_Orientia_Karp_1_1 110.53 46.113 70037000 21942000 20441000 14397000 0 0 0 12783000 474150 + 7668 791;798;277 6547 46119;46120;46121;46122;46123 29323 29323 107 1 QSVEADINGLR Unmodified 1200.6099 0.6098646 798;791;277 CON__P02535-1;CON__Q2M2I5;Q2M2I5;CON__P13645;P13645;CON__P13646-1;A8K2H9;A1A4E9 KRT24;KRT10;KRT13 Keratin, type I cytoskeletal 24;Keratin, type I cytoskeletal 10 no no 0 0 0 0 By MS/MS 1 43.38 44.032 2 0.014495 14353 20181213_JW_Orientia_Karp_3_1 107.79 61.381 0 0 0 0 0 0 0 0 0 + 7669 791;798;277 6547 46124 29324 29324 1 QSYINPSSSPQPLSSTIEHAK Unmodified 2270.1179 0.11788989 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.164 46.484 3 7.4835E-06 14735 20181213_JW_Orientia_Karp_3_2 138.82 102.14 313910000 59354000 62745000 79106000 30402000 37014000 26356000 3548300 15387000 7670 1266 6548 46125;46126;46127;46128;46129;46130;46131;46132 29325;29326;29327;29328;29329;29330;29331;29332;29333;29334 29334 10 QTALVELLK Unmodified 1013.6121 0.61209643 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.406 56.733 2 0.001599 21028 20181213_JW_Orientia_Karp_2_2 123.21 70.271 264770000 59228000 54507000 58288000 40198000 52488000 0 0 63828 + 7671 792 6549 46133;46134;46135;46136;46137;46138 29335;29336;29337;29338;29339 29339 5 QTDELSALTEK Unmodified 1233.6089 0.60886155 2028 yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 2 73.61 73.662 2 0.0040149 29844 20181213_JW_Orientia_Karp_3_2 109.44 32.961 111960000 34790000 8823600 12480000 0 6864300 0 20593000 28408000 + 7672 2028 6550 46139;46140;46141;46142;46143;46144;46145 29340 29340 1 QTESLESLLSK Unmodified 1233.6452 0.64524705 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS 1 54.603 54.603 2 0.028633 22243 20181213_JW_Orientia_Karp_1_1 86.344 40.746 6574600 6574600 0 0 0 0 0 0 0 7673 224 6551 46146 29341 29341 1 QTEVGYSSVQSR Unmodified 1339.6368 0.63680763 1105 Karp_00283 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 31.675 31.85 2 0.00031775 9207 20181213_JW_Orientia_Karp_1_1 156.01 109.56 13565000 7535000 6029500 0 0 0 0 0 0 7674 1105 6552 46147;46148;46149;46150 29342;29343;29344;29345 29342 4 QTHLEGALEQEHSR Unmodified 1633.7808 0.78084611 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 25.663 26.025 3;4 0.016994 5179 20181213_JW_Orientia_Karp_2_2 72.209 52.532 66810000 0 20925000 3842000 8025800 9293800 3441000 11938000 9343600 7675 1789 6553 46151;46152;46153;46154;46155;46156;46157;46158;46159;46160;46161;46162;46163 29346;29347 29347 2 QTLEFLRNPAMMQEMIR 2 Oxidation (M);Deamidation (NQ) 2140.0115 0.011516024 1972 Q9H347 UBQLN3 Ubiquilin-3 yes yes 0 1 2 1 By MS/MS 1 36.29 36.541 3 0.042961 9968 20181213_JW_Orientia_Karp_2_2 40.724 18.713 0 0 0 0 0 0 0 0 0 7676 1972 6554 46164 29348 29348 2083 1 QTTVSNSQQAYQEAFEISK Unmodified 2158.0178 0.017841494 1650 V9HWD6;P31946-2;P31946;B5BU24 HEL-S-1;YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 51.22 51.503 2 4.2354E-24 19675 20181213_JW_Orientia_Karp_1_3 197.88 151.81 20407000 10107000 0 8406100 0 0 0 1893500 0 7677 1650 6555 46165;46166;46167 29349;29350 29350 2 QTYLEEMHLEDTTR Oxidation (M);Deamidation (NQ) 1781.7778 0.77779414 1003 H7C3S6;H7C1C9 ARHGEF33 yes no 0 1 1 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 52.83 53.197 2 0.037716 19486 20181213_JW_Orientia_Karp_2_3 87.258 13.373 51477000 14175000 11449000 0 6683400 7486000 7662700 3768100 252770 7678 1003 6556 46168;46169;46170;46171;46172;46173;46174 29351 29351 1758 1 QVDQLTNDK Unmodified 1059.5197 0.51965261 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 25.908 26.241 2 0.0049587 6304 20181213_JW_Orientia_Karp_1_3 148.52 49.526 37635000 10268000 22151000 0 0 1695800 1057000 0 2462200 7679 1571 6557 46175;46176;46177;46178;46179;46180 29352;29353;29354 29353 3 QVGQEGVITVEDSK Unmodified 1487.7468 0.74675201 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 41.518 41.848 2 7.0992E-46 13838 20181213_JW_Orientia_Karp_1_2 262.15 180.63 541500000 173640000 130680000 117620000 38148000 27152000 0 42793000 11461000 7680 1296 6558 46181;46182;46183;46184;46185;46186;46187 29355;29356;29357;29358;29359;29360;29361 29356 7 QVGVPSIIVCINK Unmodified 1425.8014 0.80137054 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 2 1 61.249 61.573 2 5.4496E-25 25987 20181213_JW_Orientia_Karp_1_3 234.67 164.85 543390000 144680000 120920000 83387000 34703000 65743000 47640000 14022000 32305000 7681 1176;1244 6559 46188;46189;46190;46191;46192;46193;46194;46195;46196;46197;46198 29362;29363;29364;29365;29366;29367;29368;29369;29370 29365 9 QVHPDTGISSK Unmodified 1167.5884 0.58840088 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;Q96A08;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BA;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 2 21.698 22.035 2;3 5.3838E-07 4794 20181213_JW_Orientia_Karp_1_1 200.71 130.45 961520000 139420000 340670000 222400000 64763000 32535000 49297000 55231000 57193000 7682 449;1624;1817 6560 46199;46200;46201;46202;46203;46204;46205;46206;46207;46208;46209;46210;46211;46212 29371;29372;29373;29374;29375;29376;29377;29378 29371 8 QVLDNLTMEK Unmodified 1189.6013 0.60127375 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 47.626 47.964 2 0.00071694 17767 20181213_JW_Orientia_Karp_1_1 138.08 75.533 163400000 32263000 73289000 0 0 15576000 19866000 130500 22273000 + 7683 1653 6561 46213;46214;46215;46216;46217;46218;46219 29379;29380 29379 2 QVLDNLTMEK Oxidation (M) 1205.5962 0.59618837 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 42.388 42.701 2 0.00094844 13761 20181213_JW_Orientia_Karp_3_1 121.5 75.374 208980000 0 0 3356300 0 74229000 193520 131200000 0 + 7684 1653 6561 46220;46221;46222;46223;46224;46225 29381;29382;29383;29384;29385 29385 1273 5 QVNILESGGTIK Unmodified 1257.6929 0.69286595 1317 Karp_01279 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.871 47.191 2 1.2522E-05 17298 20181213_JW_Orientia_Karp_1_1 202.96 111.34 231040000 49935000 58044000 57202000 18827000 17246000 13999000 1215300 14573000 7685 1317 6562 46226;46227;46228;46229;46230;46231;46232;46233 29386;29387;29388 29386 3 QVNINTSQLSSSNIVK Unmodified 1730.9163 0.91627696 1391 Karp_02140 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 48.508 48.853 2 0.0010852 16905 20181213_JW_Orientia_Karp_2_1 115.24 67.396 55524000 19820000 10428000 9264800 4560100 3727700 3296400 216130 4210600 7686 1391 6563 46234;46235;46236;46237;46238;46239;46240;46241 29389;29390;29391;29392;29393;29394 29392 6 QVQSLTCEVDALK Unmodified 1489.7446 0.74464352 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.246 50.592 2 1.3396E-59 19565 20181213_JW_Orientia_Karp_1_1 286.19 185.37 1152700000 333830000 258100000 196430000 78247000 65522000 58441000 133310000 28797000 7687 1571 6564 46242;46243;46244;46245;46246;46247;46248;46249 29395;29396;29397;29398;29399;29400;29401;29402 29395 8 QVVPFDTTSPTITSGIR Unmodified 1817.9523 0.95232811 1140 Karp_00452 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 66.252 66.448 2 0.00070284 26313 20181213_JW_Orientia_Karp_1_1 119.62 69.466 268030000 102520000 50337000 69962000 0 1461900 22126000 3216300 18413000 7688 1140 6565 46250;46251;46252;46253;46254;46255;46256;46257;46258;46259 29403;29404;29405;29406;29407 29403 5 QVVSLDAK Unmodified 858.48108 0.48108226 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 34.326 34.699 2 0.0099327 10671 20181213_JW_Orientia_Karp_1_1 104.06 32.761 114600000 35352000 36847000 12233000 7492000 5113700 0 6242300 11317000 7689 1375 6566 46260;46261;46262;46263;46264;46265;46266 29408;29409 29408 2 QVYQDFGFPEVK Unmodified 1455.7034 0.70343063 1376 Karp_02113 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 59.519 59.749 2 0.012673 24878 20181213_JW_Orientia_Karp_1_3 93.442 51.104 33733000 9291800 0 11180000 5929000 3256100 4076600 0 0 7690 1376 6567 46267;46268;46269;46270;46271 29410 29410 1 QYILSHPEVIIESIEIMQQK Oxidation (M) 2413.2563 0.25629763 1182 Karp_00659 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 66.517 66.724 3 1.3121E-08 26561 20181213_JW_Orientia_Karp_2_1 164.01 102.25 140680000 31396000 19956000 24082000 13454000 26299000 10157000 2906900 12431000 7691 1182 6568 46272;46273;46274;46275;46276;46277;46278;46279 29411;29412;29413;29414;29415;29416;29417;29418 29415 751 8 QYILSHPEVIIESIEIMQQK Unmodified 2397.2614 0.261383 1182 Karp_00659 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 72.302 72.366 3 0.00095216 33188 20181213_JW_Orientia_Karp_1_1 115.2 87.134 362630000 142170000 66915000 62428000 5610100 24268000 15646000 45600000 0 7692 1182 6568 46280;46281;46282;46283;46284;46285;46286 29419;29420;29421 29419 3 QYKCKEFEEVFLQSMHGQEK Deamidation (NQ) 2545.1617 0.16174531 532 B3KU17;Q14586 ZNF267 Zinc finger protein 267 yes no 0 1 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 78.128 78.094 2 0.031645 36831 20181213_JW_Orientia_Karp_1_1 96.23 25.689 161620000 36625000 40712000 26660000 11647000 28583000 17392000 0 0 7693 532 6569 46287;46288;46289;46290;46291;46292 29422 29422 1504 1 QYNVGPSVSK Unmodified 1077.5455 0.54547343 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 32.2 32.593 2 0.0042599 8057 20181213_JW_Orientia_Karp_3_2 104.05 66.499 69668000 19862000 21747000 14817000 2075600 0 0 8662600 2502600 7694 85 6570 46293;46294;46295;46296;46297;46298 29423;29424;29425;29426 29426 4 RAAAASAAEAGIATTGTEDSDDALLK Unmodified 2475.2089 0.20888974 1707 P55036;H0Y3Y9 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 1 By MS/MS By matching By matching By MS/MS 1 1 1 1 47.119 47.372 3 4.081E-05 17255 20181213_JW_Orientia_Karp_1_1 107.56 81.942 24993000 12078000 8875800 0 0 2149900 0 0 1888700 7695 1707 6571 46299;46300;46301;46302 29427;29428 29427 2 RAEDGSVIDYELIDQDAR Unmodified 2063.976 0.97597668 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;H0YM50;H0YNP5;B3KRQ1;H0YN28;H0YL33;H0YNA0 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.305 54.631 3 2.8475E-32 21549 20181213_JW_Orientia_Karp_1_3 234.36 94.329 855950000 189460000 200520000 301660000 53264000 100480000 0 0 10565000 7696 124 6572 46303;46304;46305;46306;46307;46308 29429;29430;29431;29432;29433;29434 29431 6 RAEEIWQQSVIGDYLAR Unmodified 2033.033 0.033038048 397 B4DNQ1;E9PKP7;A8K962;P17480-2;P17480;B4DLB0;O00164;E9PLT2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 61.267 61.579 3 0.020402 26711 20181213_JW_Orientia_Karp_1_1 104.78 64.178 31424000 19529000 9095300 0 659470 0 1558300 0 581700 7697 397 6573 46309;46310;46311;46312;46313 29435;29436;29437 29436 3 RAESMLQQADK Unmodified 1275.6241 0.62413446 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;B4DG31;H7C4N2 PLS3 Plastin-3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 24.734 25.093 2 0.00047005 6264 20181213_JW_Orientia_Karp_1_1 160.72 67.055 19471000 4585800 4636300 5608300 0 809720 996250 1752800 1082000 7698 623 6574 46314;46315;46316;46317;46318;46319;46320 29438;29439;29440;29441;29442 29438 5 RAFVHWYVGEGMEEGEFSEAR Oxidation (M) 2501.107 0.10700763 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;B4DN58;Q15670;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;C9J2C0;Q9NY65-2;Q9NY65 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-8 chain no no 0 0 1 1 By matching By MS/MS 1 1 47.262 47.893 3 0.017315 15365 20181213_JW_Orientia_Karp_3_2 70.02 44.512 3725600 0 0 0 0 0 0 157450 3568100 7699 512;1887 6575 46321;46322 29443 29443 328 0 RAGGEESQFEMDI Oxidation (M) 1483.6249 0.62492232 1793 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 43.283 43.748 2 0.011883 14494 20181213_JW_Orientia_Karp_2_3 140.78 107.56 18054000 0 0 0 5843800 0 5643900 5309900 1256400 7700 1793 6576 46323;46324;46325;46326 29444;29445 29445 1438 2 RAIQEAAESAGGR Unmodified 1314.664 0.66402543 1360 Karp_01811 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 22.473 22.74 2 0.033837 4804 20181213_JW_Orientia_Karp_1_2 108.98 60.229 5481300 1087900 1439600 852420 759070 739910 0 602380 0 7701 1360 6577 46327;46328;46329;46330;46331;46332 29446 29446 1 RALDLNLK Unmodified 941.56581 0.56581494 1599 P14927;E5RHG9;B2R4A2;B7Z2R2;P14927-2 UQCRB Cytochrome b-c1 complex subunit 7 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 36.3 36.642 2 0.016302 10719 20181213_JW_Orientia_Karp_3_1 153.04 48.289 71559000 23733000 27428000 0 3927700 3403400 3398600 9668900 0 7702 1599 6578 46333;46334;46335;46336;46337;46338 29447;29448;29449;29450 29450 4 RALEQQVEEMK Unmodified 1359.6816 0.68164933 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 31.688 31.958 2 4.0739E-07 8889 20181213_JW_Orientia_Karp_1_2 177.57 106.75 133720000 17714000 41611000 69934000 2987100 0 1479000 0 0 7703 47 6579 46339;46340;46341;46342;46343 29451;29452;29453;29454;29455 29452 5 RALEQQVEEMK Oxidation (M) 1375.6766 0.67656396 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 1 1 By matching By MS/MS By MS/MS 1 1 1 24.146 24.379 3 0.0034736 5102 20181213_JW_Orientia_Karp_2_1 94.82 51.318 9404600 1535300 0 0 3169500 4699900 0 0 0 7704 47 6579 46344;46345;46346 29456;29457 29456 32 2 RANITVDR Unmodified 943.51993 0.51992738 1249 Karp_00926 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 19.713 19.933 2 0.018989 3807 20181213_JW_Orientia_Karp_1_2 145.16 59.796 23254000 5450600 5743700 9815200 0 0 0 2244500 0 7705 1249 6580 46347;46348;46349;46350;46351 29458;29459;29460;29461 29459 4 RAPSVANVGSHCDLSLK Unmodified 1809.9156 0.91556545 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91 FLNA;FLJ00119 Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 35.898 36.147 3 0.00041141 10681 20181213_JW_Orientia_Karp_1_3 119.51 78.65 30715000 17380000 0 13060000 274690 0 0 0 0 7706 1615 6581 46352;46353;46354;46355 29462;29463;29464 29464 3 RAQILESEGK Unmodified 1129.6091 0.60913632 1104 Karp_00281 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 22.273 22.618 2 0.00032913 5079 20181213_JW_Orientia_Karp_1_1 150.81 95.44 124600000 17595000 29299000 42104000 11884000 6581600 5276000 8682400 3174000 7707 1104 6582 46356;46357;46358;46359;46360;46361;46362;46363 29465;29466;29467;29468;29469;29470;29471 29465 7 RAQLSQYFDAVK Unmodified 1424.7412 0.74121312 206 B4DMD3;B4DY34;A0A024RAW9;Q9Y2W2;F5H5G4 WBP11 WW domain-binding protein 11 yes no 0 0 0 1 By MS/MS By matching 1 1 44.239 44.513 3 0.01747 15525 20181213_JW_Orientia_Karp_1_2 91.202 53.589 20329000 0 13719000 6610000 0 0 0 0 0 7708 206 6583 46364;46365 29472 29472 1 RAQNLLEQFQK 3 Deamidation (NQ) 1376.6936 0.69359423 715 B7Z915;B7ZB61;B7Z2W5;Q7Z3U6;Q9NZL6;Q9NZL6-2 RGL1;DKFZp686C2469 Ral guanine nucleotide dissociation stimulator-like 1 yes no 0 3 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.859 52.109 2 0.036373 20044 20181213_JW_Orientia_Karp_1_3 71.614 13.755 69393000 16628000 14518000 16348000 9747700 6763900 5386300 0 0 7709 715 6584 46366;46367;46368;46369;46370;46371 29473 29473 1602;1603 1 RAQYYAAK Unmodified 969.50321 0.50321468 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 1 By MS/MS 1 13.566 13.917 2 0.040211 2382 20181213_JW_Orientia_Karp_2_3 107.59 60.512 31897000 0 0 0 0 0 31897000 0 0 7710 1068;1081;1083;1086;1151;1356 6585 46372 29474 29474 1 RAQYYAAKAYGR Unmodified 1416.7262 0.72623176 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 22.098 22.362 3 0.0010059 4706 20181213_JW_Orientia_Karp_1_2 177.44 133.54 39953000 11314000 13876000 7541200 1844400 1792400 1215600 2368800 0 7711 1068;1081;1083;1086;1151;1356 6586 46373;46374;46375;46376;46377;46378;46379 29475;29476 29476 2 RASGQAFELILSPR Unmodified 1543.8471 0.84707518 282 A2A2D0;B5BU83;P16949;P16949-2;Q59G27;Q96CE4 STMN1 Stathmin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 1 52.075 52.426 2;3 0.00069575 18828 20181213_JW_Orientia_Karp_2_2 130.47 58.91 219640000 26090000 17348000 0 76853000 36739000 57666000 4168900 772110 7712 282 6587 46380;46381;46382;46383;46384;46385;46386;46387;46388;46389;46390 29477;29478;29479;29480;29481;29482;29483;29484 29480 8 RAVLEEAR Unmodified 942.52468 0.52467841 1095 Karp_00244 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 20.98 21.259 2 0.019207 4504 20181213_JW_Orientia_Karp_1_1 136.27 35.057 19245000 3209500 6924500 4230300 1611700 1008800 1002100 1257800 0 7713 1095 6588 46391;46392;46393;46394;46395;46396;46397 29485;29486;29487 29485 3 RAYEALDQFNWSEDELITYEQELK Unmodified 2989.3981 0.39814707 1081;1151;1356;1083 Karp_00113;Karp_00131;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01685 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 71.519 71.597 3 4.734E-10 29128 20181213_JW_Orientia_Karp_2_1 151 109.72 445360000 145840000 81745000 82088000 30361000 37296000 31574000 36450000 0 7714 1081;1083;1151;1356 6589 46398;46399;46400;46401;46402;46403;46404 29488;29489;29490;29491;29492;29493;29494 29492 7 RCESCAPGYEGNPIQPGGK Unmodified 2075.9153 0.91530745 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 34.829 35.231 3 0.00066111 10298 20181213_JW_Orientia_Karp_1_3 108.34 70.224 33384000 8019900 0 11605000 1344000 0 0 10366000 2049600 7715 195 6590 46405;46406;46407;46408;46409 29495;29496;29497;29498;29499 29496 5 RDDVHIINLDYTASQIDVVSK Unmodified 2400.2285 0.22850297 1347 Karp_01523 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 58.374 58.585 3;4 8.603E-09 22069 20181213_JW_Orientia_Karp_2_2 163.15 129.39 454700000 104560000 109020000 112880000 0 47610000 80632000 0 0 7716 1347 6591 46410;46411;46412;46413;46414;46415;46416;46417;46418;46419 29500;29501;29502;29503;29504;29505 29504 6 RDFIATLEAEAFDDVVGETVGK Unmodified 2381.1751 0.17507042 879 E7EVA0;P27816;P27816-2;P27816-6;B4DM10;P27816-5;A0A024R2V2;A0A024R2S1;Q6NX68;Q05D06;H7C456;P27816-7 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 74.671 74.688 3 0.0022916 30119 20181213_JW_Orientia_Karp_2_2 92.133 33.643 11457000 0 2708300 0 0 6478400 2270400 0 0 7717 879 6592 46420;46421;46422 29506 29506 1 RDFSAPTLEDHFNK Unmodified 1675.7954 0.79543354 1709 P55081 MFAP1 Microfibrillar-associated protein 1 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 39.897 40.237 3 0.022423 12412 20181213_JW_Orientia_Karp_2_1 89.992 59.934 20127000 0 0 3270400 7988800 1746300 518670 6602500 0 7718 1709 6593 46423;46424;46425;46426;46427 29507 29507 1 RDHALLEEQSK Unmodified 1324.6735 0.67352749 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 20.345 20.609 3 0.013112 3966 20181213_JW_Orientia_Karp_3_1 105.95 67.371 45714000 13141000 10252000 12774000 3165000 1301700 1367300 3713100 0 7719 1509 6594 46428;46429;46430;46431;46432;46433;46434 29508;29509;29510;29511;29512 29512 5 RDHFEEAMR Oxidation (M) 1205.5248 0.52475476 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 16.865 17.014 3 0.029978 2772 20181213_JW_Orientia_Karp_1_3 53.013 27.887 10268000 5851500 0 3599900 816540 0 0 0 0 7720 1708 6595 46435;46436;46437;46438 29513;29514;29515 29515 1328 3 RDHFEEAMR Unmodified 1189.5298 0.52984014 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 1 By MS/MS By MS/MS By matching 1 1 1 22.281 22.614 3 0.00083372 4685 20181213_JW_Orientia_Karp_1_3 120.63 86.74 7978400 0 5706500 1543300 0 0 0 728630 0 7721 1708 6595 46439;46440;46441 29516;29517 29517 2 RDIDNLVQR Unmodified 1127.6047 0.60471964 67 Q53FS4;B2R774;A0A024R2A7;P49257 LMAN1 Protein ERGIC-53 yes no 0 0 0 1 By MS/MS 1 33.701 33.701 2 0.0064855 10165 20181213_JW_Orientia_Karp_1_1 125.71 46.943 22988000 22988000 0 0 0 0 0 0 0 7722 67 6596 46442 29518 29518 1 RDLGEELEALK Unmodified 1271.6721 0.67213051 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.301 47.646 2 1.8626E-08 17522 20181213_JW_Orientia_Karp_1_1 197.73 74.622 701260000 140210000 266370000 133320000 29124000 24214000 53665000 6011600 48345000 7723 47 6597 46443;46444;46445;46446;46447;46448;46449;46450 29519;29520;29521;29522;29523;29524 29519 6 RDLSEELEALK Unmodified 1301.6827 0.68269519 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 48.847 49.193 2 0.016044 18024 20181213_JW_Orientia_Karp_1_3 111.5 36.552 85210000 14699000 33938000 18548000 3681300 5473900 3168500 95494 5605700 7724 944 6598 46451;46452;46453;46454;46455;46456;46457;46458 29525 29525 1 RDNTNEIYSGK Unmodified 1295.6106 0.61059288 1559 P05556;P05556-2;P05556-5;P05556-4;P05556-3;H7C4N8 ITGB1 Integrin beta-1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 22.31 22.679 2 0.0030159 4833 20181213_JW_Orientia_Karp_1_2 134.3 74.137 9209400 1767200 4558200 0 627450 620360 0 1158100 478130 7725 1559 6599 46459;46460;46461;46462;46463;46464;46465 29526;29527;29528;29529;29530 29527 5 RDNYVPEVSALDQEIIEVDPDTK Unmodified 2644.2868 0.28680571 1572 P0CW22;P08708;H0YN88;A0A075B716 RPS17L;RPS17 40S ribosomal protein S17-like;40S ribosomal protein S17 yes no 0 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 66.018 66.22 3 0.0019569 23208 20181213_JW_Orientia_Karp_3_1 90.378 61.109 158190000 57095000 4293800 23786000 0 28596000 10469000 33010000 935640 7726 1572 6600 46466;46467;46468;46469;46470;46471;46472 29531;29532 29532 2 RDPGVITYDLPTPPGEK Unmodified 1853.9523 0.95232811 246 A0A024RCN6;P26640 VARS Valine--tRNA ligase yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 52.331 52.697 3 0.0087293 20417 20181213_JW_Orientia_Karp_1_3 99.915 61.961 23485000 0 8610500 12188000 2686200 0 0 0 0 7727 246 6601 46473;46474;46475 29533 29533 1 RDQALTEEHAR Unmodified 1324.6484 0.64837537 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;A1L0V1;H0YJ11 ACTN1 Alpha-actinin-1 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 16.058 16.308 3 0.0046413 2724 20181213_JW_Orientia_Karp_1_3 131.17 75.451 16106000 7499500 2754600 4615500 763450 0 0 472900 0 7728 133 6602 46476;46477;46478;46479;46480 29534;29535;29536;29537 29535 4 RDQNYPGAIAIHHPNVAEK Unmodified 2129.0766 0.076634197 801 CON__P15636 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 10 9 11 9 6 7 9 36.571 36.914 3;4 0.0016257 7909 20181213_JW_Orientia_Karp_2_1 97.713 56.989 740970000000 160440000000 90484000000 187160000000 94715000000 62392000000 78199000000 772730000 66807000000 + 7729 801 6603 46481;46482;46483;46484;46485;46486;46487;46488;46489;46490;46491;46492;46493;46494;46495;46496;46497;46498;46499;46500;46501;46502;46503;46504;46505;46506;46507;46508;46509;46510;46511;46512;46513;46514;46515;46516;46517;46518;46519;46520;46521;46522;46523;46524;46525;46526;46527;46528;46529;46530;46531;46532;46533;46534;46535;46536;46537;46538;46539;46540;46541;46542;46543;46544;46545;46546;46547;46548;46549;46550 29538;29539;29540;29541;29542;29543;29544;29545;29546;29547;29548;29549;29550;29551;29552;29553;29554;29555;29556;29557;29558;29559;29560;29561;29562;29563;29564;29565;29566;29567;29568;29569;29570;29571;29572;29573 29555 32 RDQNYPGAIAIHHPNVAEK Deamidation (NQ) 2130.0606 0.060649782 801 CON__P15636 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 6 3 4 3 1 3 4 4 35.725 36.059 2;3;4 1.5553E-05 10097 20181213_JW_Orientia_Karp_1_3 145.52 104.67 6236300000 3869700000 743660000 1275000000 24517000 2138800 57970000 190930000 72383000 + 7730 801 6603 46551;46552;46553;46554;46555;46556;46557;46558;46559;46560;46561;46562;46563;46564;46565;46566;46567;46568;46569;46570;46571;46572;46573;46574;46575;46576;46577;46578 29574;29575;29576;29577;29578;29579;29580;29581;29582;29583;29584;29585;29586 29578 286;287;1655 12 RDQNYPGAIAIHHPNVAEKR Unmodified 2285.1777 0.17774523 801 CON__P15636 yes yes 0 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 3 1 1 1 1 2 1 29.825 30.235 4;5 0.021717 8517 20181213_JW_Orientia_Karp_1_1 89.604 60.432 1966600000 196030000 551900000 152060000 296330000 198140000 72014000 451670000 48399000 + 7731 801 6604 46579;46580;46581;46582;46583;46584;46585;46586;46587;46588;46589 29587;29588;29589;29590;29591 29587 5 RDQNYPGAIAIHHPNVAEKR Deamidation (NQ) 2286.1618 0.16176081 801 CON__P15636 yes yes 0 1 0 2 By matching By MS/MS By matching By matching 1 1 1 1 31.072 31.512 4 0.022126 7959 20181213_JW_Orientia_Karp_2_1 62.658 26.786 10879000 0 4240000 0 4515400 0 1155700 0 967920 + 7732 801 6604 46590;46591;46592;46593 29592 29592 286;287;1655 1 RDSLGAYASQDANEQGQDLGK Unmodified 2222.02 0.019966759 106 A0A024R542;Q9C0C2;B3KXS7;Q9C0C2-2 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 37.458 37.895 3 5.3708E-05 11777 20181213_JW_Orientia_Karp_1_2 123.61 98.353 21894000 0 5442100 10711000 981060 0 0 4759800 0 7733 106 6605 46594;46595;46596;46597;46598 29593;29594;29595;29596;29597 29595 5 REDEEESLNEVGYDDIGGCR Unmodified 2340.9764 0.97644696 1708 V9HW80;P55072;Q96IF9;Q9HAP1 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 0 0 0 1 By MS/MS By matching 1 1 47.098 47.197 3 0.04157 17283 20181213_JW_Orientia_Karp_1_1 46.353 29.274 15345000 9571400 0 5773200 0 0 0 0 0 7734 1708 6606 46599;46600 29598 29598 1 REDLVVAPAGITLK Unmodified 1480.8613 0.86132826 710 Q6QE17;B7Z1G4;H0Y4R1;P12268;E7ETK5 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes no 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 52.736 53.061 3 0.04189 19162 20181213_JW_Orientia_Karp_2_2 52.5 22.062 75823000 0 45876000 0 11010000 8805900 10132000 0 0 7735 710 6607 46601;46602;46603;46604 29599 29599 1 REEAAAVPAAAPDDLALLK Unmodified 1920.0316 0.031641065 180 A0A024R9D2;Q86UE4;E5RJU9 MTDH Protein LYRIC yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 55.89 56.266 3 0.010446 20864 20181213_JW_Orientia_Karp_2_2 75.91 41.466 49454000 0 17220000 11927000 5426600 6485300 6892200 1502800 0 7736 180 6608 46605;46606;46607;46608;46609;46610 29600;29601;29602;29603 29603 4 REEEEFNTGPLSVLTQSVK Unmodified 2162.0855 0.085527128 1733 P62316;K7ERG4;P62316-2 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 61.258 61.577 3 0.00078887 26739 20181213_JW_Orientia_Karp_1_1 124.98 81.813 90716000 13823000 12750000 15353000 7425100 22470000 15777000 188440 2930500 7737 1733 6609 46611;46612;46613;46614;46615;46616;46617;46618 29604;29605;29606;29607;29608;29609;29610;29611;29612 29604 9 REELITNWEQIR Unmodified 1585.8213 0.82125436 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 49.864 50.113 3 0.0053085 18814 20181213_JW_Orientia_Karp_1_2 130.15 76.902 69657000 24424000 13932000 19847000 8182700 3270300 0 0 0 7738 316 6610 46619;46620;46621;46622;46623 29613;29614 29613 2 REELSNVLAAMR Oxidation (M) 1403.7191 0.71909747 2013 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 1 1 By MS/MS 1 38.915 39.114 3 0.030855 12399 20181213_JW_Orientia_Karp_1_3 52.576 9.9469 11505000 0 0 11505000 0 0 0 0 0 7739 2013 6611 46624 29615 29615 1536 1 REFIQANALNVNNLDV Deamidation (NQ) 1829.9272 0.92717599 1262 Karp_01022 yes yes 0 1 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 64.28 64.472 2 0.015935 28385 20181213_JW_Orientia_Karp_1_1 127.32 57.602 51666000 21707000 10298000 0 0 12326000 5179600 0 2154800 7740 1262 6612 46625;46626;46627;46628;46629 29616 29616 674 1 REFIQANALNVNNLDV Unmodified 1828.9432 0.94316041 1262 Karp_01022 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 62.822 63.081 2 0.0080919 23651 20181213_JW_Orientia_Karp_3_2 118.52 75.894 122400000 38828000 23355000 30135000 1872300 15695000 7772600 0 4738400 7741 1262 6612 46630;46631;46632;46633;46634;46635;46636 29617 29617 1 REFTESQLQEGK Unmodified 1450.7052 0.70522155 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9 TAGLN Transgelin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 1 2 2 2 2 2 1 28.842 29.183 2;3 5.4123E-05 8007 20181213_JW_Orientia_Karp_1_1 177.04 113.96 66610000 23088000 4131700 9267100 5566100 4537500 3000400 14360000 2659700 7742 1761 6613 46637;46638;46639;46640;46641;46642;46643;46644;46645;46646;46647;46648;46649;46650 29618;29619;29620;29621;29622 29618 5 REHALTSGTIK Unmodified 1211.6622 0.66223452 153 R4GMY8;E5RHG8;A0A024R7Y5;Q15369-2;Q15369 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 18.832 19.065 3 0.0014054 3380 20181213_JW_Orientia_Karp_1_3 121.21 80.128 15747000 5648700 5253500 2368400 932520 0 695110 848370 0 7743 153 6614 46651;46652;46653;46654;46655;46656 29623;29624;29625;29626;29627 29624 5 REIELIEGDALSER Unmodified 1628.837 0.836964 1444 Karp_02422 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 48.506 48.806 3 0.017791 17933 20181213_JW_Orientia_Karp_1_2 95.822 50.543 33770000 0 12068000 6088400 7661500 3573000 4379600 0 0 7744 1444 6615 46657;46658;46659;46660;46661 29628;29629 29628 2 REILSMQR Unmodified 1031.5546 0.55459833 1347 Karp_01523 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 30.083 30.456 2 0.010674 8087 20181213_JW_Orientia_Karp_1_3 160.63 24.788 115130000 46311000 23660000 24845000 0 3941300 3341300 10534000 2497500 7745 1347 6616 46662;46663;46664;46665;46666;46667;46668 29630;29631;29632 29630 3 REITESILAK Unmodified 1158.6608 0.66083754 1361 Karp_01814 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 36.468 36.862 2 0.029592 11812 20181213_JW_Orientia_Karp_1_1 99.788 23.688 138570000 45425000 33068000 36103000 5176700 0 0 14190000 4607900 7746 1361 6617 46669;46670;46671;46672;46673;46674 29633;29634 29633 1 RELQELVQYPVEHPDK Unmodified 1979.0112 0.011239973 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 43.256 43.598 3 0.018665 14808 20181213_JW_Orientia_Karp_1_3 90.754 42.44 95839000 20857000 31774000 36803000 0 0 0 5464000 941820 7747 1708 6618 46675;46676;46677;46678;46679 29635;29636 29636 2 RELQQAVLHMEQR Oxidation (M) 1652.8417 0.84167222 390 B4DZX0;Q53GX6;A8K7Q1;Q02818;B3KUR6;Q96BA4 NUCB1 Nucleobindin-1 yes no 0 0 1 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 26.756 27.158 3 0.026515 5595 20181213_JW_Orientia_Karp_2_2 56.599 31.365 20223000 3632500 2982300 0 2252300 6813500 0 3173000 1369400 7748 390 6619 46680;46681;46682;46683;46684;46685 29637;29638;29639 29638 273 3 RENSNNLVILLDEIDK Unmodified 1883.9953 0.99525556 1190 Karp_00705 yes yes 0 0 0 1 By matching By MS/MS By matching 1 1 1 64.262 64.449 3 0.0002982 25075 20181213_JW_Orientia_Karp_2_2 132.84 71.919 15092000 7883000 0 0 0 6863800 0 0 345180 7749 1190 6620 46686;46687;46688 29640 29640 1 RENSNNLVILLDEIDK Deamidation (NQ) 1884.9793 0.97927114 1190 Karp_00705 yes yes 0 1 0 1 By MS/MS 1 70.155 70.405 3 0.0097834 25383 20181213_JW_Orientia_Karp_3_1 90.754 42.576 0 0 0 0 0 0 0 0 0 7750 1190 6620 46689 29641 29641 601 1 REPAVGEPAEVTTTVLVR Unmodified 1923.0425 0.042540102 1052 K7EKL8;Q5NKV8;P05362;B4DNT6;B4DQW5 ICAM1 Intercellular adhesion molecule 1 yes no 0 0 0 1 By MS/MS 1 49.374 49.572 3 0.012525 18265 20181213_JW_Orientia_Karp_1_3 93.427 63.009 0 0 0 0 0 0 0 0 0 7751 1052 6621 46690 29642 29642 1 REPGYTPPGAGNQNPPGMYPVTGPK Oxidation (M) 2597.2333 0.23327077 730 B7Z871;B7ZLW0;Q93052;C9JXK9;C9JUT4 LPP Lipoma-preferred partner yes no 0 0 1 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 42.027 42.328 3 0.0046521 13099 20181213_JW_Orientia_Karp_2_2 59.429 22.05 45503000 9592000 6493100 8815400 0 5266000 2871100 10989000 1475800 7752 730 6622 46691;46692;46693;46694;46695;46696;46697 29643;29644;29645;29646;29647 29645 432 5 REQEVNILK Unmodified 1127.6299 0.62987176 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 1 1 1 30.379 30.73 2;3 0.0011111 8738 20181213_JW_Orientia_Karp_1_1 175.91 16.716 543440000 238520000 89860000 99810000 27217000 13818000 0 30425000 43788000 7753 47 6623 46698;46699;46700;46701;46702;46703;46704;46705;46706 29648;29649;29650;29651;29652;29653 29648 5 RFAIYEVYK Unmodified 1187.6339 0.63389451 1125 Karp_00328 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 44.334 44.584 2 0.029042 15936 20181213_JW_Orientia_Karp_1_1 101.25 50.646 126500000 34602000 51034000 32686000 3741600 0 4437800 0 0 7754 1125 6624 46707;46708;46709;46710;46711 29654;29655;29656 29654 3 RFATVSHAPLVK Unmodified 1324.7616 0.76155464 1172 Karp_00626 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 30.056 30.406 3 0.006959 7594 20181213_JW_Orientia_Karp_3_1 124.38 77.315 30488000 12238000 4122700 4815000 944560 2323200 0 6044700 0 7755 1172 6625 46712;46713;46714;46715;46716;46717 29657;29658;29659 29659 3 RFDAQTGADR Unmodified 1135.537 0.53703401 342 A8K2M0;P43686-2;P43686 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 20.773 21.123 2 0.029525 4191 20181213_JW_Orientia_Karp_1_2 99.815 27.582 1169000 0 713510 0 111010 0 0 344510 0 7756 342 6626 46718;46719;46720 29660 29660 1 RFDDAVVQSDMK Unmodified 1409.6609 0.66091389 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;P11142-2;Q53HF2;E9PNE6;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;A4D111 HEL-S-72p;HSPA8;LOC401308 Heat shock cognate 71 kDa protein yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 2 1 2 2 1 38.172 38.484 2;3 0.0032398 11958 20181213_JW_Orientia_Karp_1_3 142.89 91.459 59632000 16364000 8436400 24153000 3032300 0 0 7646000 0 7757 1586 6627 46721;46722;46723;46724;46725;46726;46727;46728 29661;29662;29663 29662 3 RFDDAVVQSDMK Oxidation (M) 1425.6558 0.65582851 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;P11142-2;Q53HF2;E9PNE6;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;A4D111 HEL-S-72p;HSPA8;LOC401308 Heat shock cognate 71 kDa protein yes no 0 0 1 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 2 2 2 2 1 2 1 32.295 32.669 2;3 0.007234 8086 20181213_JW_Orientia_Karp_2_2 80.17 49.298 112110000 14898000 45037000 20582000 9365800 9220700 2586000 8957400 1461000 7758 1586 6627 46729;46730;46731;46732;46733;46734;46735;46736;46737;46738;46739;46740;46741 29664;29665;29666 29665 1205 1 RFDEATQLR Unmodified 1134.5782 0.57817054 1607 P17858;Q9BSP4;Q7L2M7;P17858-2 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 0 0 0 1 By MS/MS By MS/MS 1 1 30.975 31.249 2 0.0018754 8550 20181213_JW_Orientia_Karp_1_2 174.02 86.268 0 0 0 0 0 0 0 0 0 7759 1607 6628 46742;46743 29667;29668 29667 2 RFDEILEASDGIMVAR Unmodified 1820.9091 0.90908309 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 61.816 62.006 3 7.5412E-14 26316 20181213_JW_Orientia_Karp_1_3 202.32 155.2 106470000 24544000 11390000 38777000 0 20401000 11358000 0 0 7760 1597 6629 46744;46745;46746;46747;46748;46749 29669;29670;29671;29672;29673;29674 29671 6 RFDEILEASDGIMVAR Oxidation (M) 1836.904 0.90399771 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 56.6 56.97 3 2.5899E-14 21284 20181213_JW_Orientia_Karp_2_2 206.49 152.56 86348000 0 14414000 29163000 6546100 11687000 16232000 0 8305000 7761 1597 6629 46750;46751;46752;46753;46754;46755;46756;46757;46758;46759;46760 29675;29676;29677;29678;29679;29680;29681;29682;29683;29684;29685;29686;29687;29688 29683 1221 14 RFEEELAAR Unmodified 1119.5673 0.5672715 390 B4DZX0;Q53GX6;A8K7Q1;Q02818;B3KUR6;Q96BA4 NUCB1 Nucleobindin-1 yes no 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 31.603 31.93 2 0.015863 8110 20181213_JW_Orientia_Karp_2_1 111.46 48.036 25131000 3038300 4777700 10888000 3242000 0 2047200 0 1137700 7762 390 6630 46761;46762;46763;46764;46765;46766 29689;29690 29689 2 RFGSEFSPELQASFQK Unmodified 1856.9057 0.90571227 812 CON__Q3SX09 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 50.854 51.161 3 0.024738 19466 20181213_JW_Orientia_Karp_1_3 82.942 37.729 50919000 7863300 9249900 8026700 7857400 4088200 7486000 6347800 0 + 7763 812 6631 46767;46768;46769;46770;46771;46772;46773 29691 29691 1 RFHLSDQER Unmodified 1186.5843 0.58431855 1380 Karp_02117 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 21.185 21.464 3 0.0058844 3441 20181213_JW_Orientia_Karp_2_2 115.7 30.409 47247000 8363400 13245000 10137000 4416100 5637400 3586300 1862000 0 7764 1380 6632 46774;46775;46776;46777;46778;46779;46780 29692;29693;29694;29695;29696;29697;29698 29696 7 RFKLTPPQPTIMPISIADR Unmodified 2180.214 0.2139793 1371 Karp_02001 yes yes 0 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 57.64 57.947 3 0.0064882 24534 20181213_JW_Orientia_Karp_1_1 105.5 73.7 236400000 47491000 85170000 51727000 10898000 28587000 12387000 138340 0 7765 1371 6633 46781;46782;46783;46784;46785;46786;46787 29699;29700 29699 2 RFKLTPPQPTIMPISIADR Oxidation (M) 2196.2089 0.20889392 1371 Karp_02001 yes yes 0 0 1 2 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 53.463 53.713 3 0.0098043 19546 20181213_JW_Orientia_Karp_2_1 112.44 83.86 162520000 32189000 0 32614000 49484000 14915000 33322000 0 0 7766 1371 6633 46788;46789;46790;46791;46792 29701 29701 953 1 RFNAIFESLPR Unmodified 1348.7252 0.72516913 1449 Karp_02529 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 51.463 51.73 3 0.00029387 18647 20181213_JW_Orientia_Karp_2_3 135.8 77.096 29407000 10518000 0 0 11946000 0 6943100 0 0 7767 1449 6634 46793;46794;46795;46796 29702;29703;29704 29704 3 RFPGLLINLEESQKLGAQFLK Deamidation (NQ) 2401.3369 0.33693121 320 A6NHS7 MANSC4 MANSC domain-containing protein 4 yes yes 0 1 0 2 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 60.429 60.639 4 0.042664 26154 20181213_JW_Orientia_Karp_1_1 47.568 9.1505 41291000 9251200 12188000 8227300 0 5203800 6420400 0 0 7768 320 6635 46797;46798;46799;46800;46801 29705 29705 1383 1 RFPGYDSESK Unmodified 1184.5462 0.54620171 286 B3KTM6;A2RUM7;P46777;Q59GX9 RPL5 60S ribosomal protein L5 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 27.888 28.178 2 4.4828E-06 6672 20181213_JW_Orientia_Karp_2_3 204.79 95.498 92747000 24720000 26937000 30406000 0 0 5100700 5583300 0 7769 286 6636 46802;46803;46804;46805;46806 29706;29707;29708;29709 29708 4 RFSGVNDTDFR Acetyl (Protein N-term);Deamidation (NQ) 1355.6106 0.61059288 979 H0YJK9 POMT2 yes yes 1 1 0 1 By MS/MS By matching 1 1 56.679 57.31 2 0.010128 20022 20181213_JW_Orientia_Karp_3_1 81.972 8.307 17611000 0 0 0 0 0 0 11970000 5640800 7770 979 6637 46807;46808 29710 29710 349 1 RFSLSSSGK Unmodified 967.50869 0.50869399 1250 Karp_00927 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 23.133 23.528 2 0.0040856 4754 20181213_JW_Orientia_Karp_2_1 133.23 81.44 416770000 0 131700000 130410000 34232000 36375000 19557000 44308000 20183000 7771 1250 6638 46809;46810;46811;46812;46813;46814;46815 29711;29712;29713;29714;29715;29716 29712 6 RFSTEYELQQLEQFK Unmodified 1944.9581 0.95814177 234;613 A0A024RC61;Q59E93;P15144;B4DV63;B4DP96;B4DPH5;B4DP01 ANPEP Aminopeptidase N no no 0 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 56.096 56.346 3 0.0042358 23424 20181213_JW_Orientia_Karp_1_1 98.676 68.543 21141000 6482900 0 8868700 3036500 0 2753300 0 0 7772 234;613 6639 46816;46817;46818;46819 29717;29718 29717 2 RFYDEISAHPLR Unmodified 1502.763 0.7630112 1449 Karp_02529 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 39.864 40.131 3 0.0059024 13488 20181213_JW_Orientia_Karp_1_1 109.16 62.173 115260000 32947000 38781000 26919000 0 1923000 1693800 12999000 0 7773 1449 6640 46820;46821;46822;46823;46824;46825 29719;29720;29721;29722 29719 4 RFYEQMNGPVAGASR Oxidation (M);Deamidation (NQ) 1698.7784 0.77840327 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;E9PK01;P29692-4;Q71RH4;Q9H7G6;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PL71;E9PN91;E9PIZ1;H0YCK7;E9PK06;E9PKK3;E9PK72 EEF1D Elongation factor 1-delta yes no 0 1 1 1 By MS/MS By matching 1 1 34.473 34.572 3 0.0082483 10534 20181213_JW_Orientia_Karp_1_1 87.824 59.184 24017000 16315000 0 7702000 0 0 0 0 0 7774 1641 6641 46826;46827 29723 29723 1092;1937 1267 1 RFYEQMNGPVAGASR Deamidation (NQ) 1682.7835 0.78348864 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;E9PK01;P29692-4;Q71RH4;Q9H7G6;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PL71;E9PN91;E9PIZ1;H0YCK7;E9PK06;E9PKK3;E9PK72 EEF1D Elongation factor 1-delta yes no 0 1 0 1 By MS/MS By matching 1 1 39.308 39.758 3 0.034075 12755 20181213_JW_Orientia_Karp_1_2 58.824 20.458 14131000 0 12835000 0 1296800 0 0 0 0 7775 1641 6641 46828;46829 29724 29724 1092;1937 0 RGAPAAATAPAPTAHK Unmodified 1486.8005 0.80045934 1926 Q92522 H1FX Histone H1x yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 20.823 21.09 3 0.0065784 4029 20181213_JW_Orientia_Karp_1_3 89.466 47.986 33787000 11356000 10494000 5631400 1972300 570980 1616300 2146100 0 7776 1926 6642 46830;46831;46832;46833;46834;46835;46836 29725 29725 1 RGDFFYHSENPK Unmodified 1495.6844 0.68442653 69 Q8TEP9;A0A024R2F9;Q9BTV4 FLJ00144;TMEM43 Transmembrane protein 43 yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 29.183 29.382 3 0.01261 8086 20181213_JW_Orientia_Karp_1_1 107.37 58.021 26060000 5315500 16316000 4107100 0 0 320990 0 0 7777 69 6643 46837;46838;46839;46840 29726 29726 1 RGFAFVTFDDHDSVDK Unmodified 1854.8537 0.8536767 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q6IPF2;Q0VAC0;F8VZ49;A0A024RC46;H0YH80;A0A024QZ98;Q32P51;F8VTQ5 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.703 50.004 3 1.2549E-05 18564 20181213_JW_Orientia_Karp_1_3 156.57 98.501 172200000 37181000 20311000 30423000 38289000 16595000 17389000 0 12010000 7778 209 6644 46841;46842;46843;46844;46845;46846;46847 29727;29728;29729;29730;29731;29732;29733 29728 6 RGFAFVTFDDHDTVDK Unmodified 1868.8693 0.86932676 1700 P51991;B4E3E6;B4DDB6;P51991-2 HNRNPA3;HNRPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 1 By MS/MS 1 49.758 50.368 3 0.022892 16917 20181213_JW_Orientia_Karp_3_2 127.3 78.109 0 0 0 0 0 0 0 0 0 7779 1700 6645 46848 29734 29734 1 RGFGFVEFEDPR Unmodified 1454.6943 0.69426293 136 A0A024R6D8;Q59EK7;Q13243;G3V5K8;B4DJK0;B4DUA4;Q13243-2 SFRS5;SRSF5 Serine/arginine-rich splicing factor 5 yes no 0 0 0 1 By matching By MS/MS 1 1 53.894 54.145 3 0.025201 19934 20181213_JW_Orientia_Karp_2_3 102.62 43.944 9147300 0 0 0 0 1659400 7487900 0 0 7780 136 6646 46849;46850 29735 29735 1 RGFGFVTFDDHDPVDK Unmodified 1850.8588 0.85876208 191 A0A024RA27;A0A024RA61;P22626-2;P22626;I6L957;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 50.924 51.269 3 0.0018624 19558 20181213_JW_Orientia_Karp_1_3 154.81 110.45 326400000 37233000 45240000 46676000 64562000 31469000 41435000 53536000 6245600 7781 191 6647 46851;46852;46853;46854;46855;46856;46857;46858 29736;29737;29738 29737 3 RGLESDVAELR Unmodified 1243.6521 0.65206377 1044 J9JID7;Q03252 LMNB2 Lamin-B2 yes no 0 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 38.06 38.36 2 0.041539 12545 20181213_JW_Orientia_Karp_1_1 97.452 24.967 19213000 6509500 4390200 7264600 0 0 0 1048900 0 7782 1044 6648 46859;46860;46861;46862 29739 29739 1 RGLGAGAGAGEESPATSLPR Unmodified 1852.9391 0.93913766 1502 O15173;O15173-2 PGRMC2 Membrane-associated progesterone receptor component 2 yes no 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 37.882 38.182 3 0.01791 11764 20181213_JW_Orientia_Karp_1_3 86.727 32.324 19811000 4219200 4723400 8800300 0 0 0 2068300 0 7783 1502 6649 46863;46864;46865;46866 29740 29740 1 RGLLMLVSSR Unmodified 1130.6594 0.65939775 1128 Karp_00331 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 46.302 46.574 2 1.0989E-05 16334 20181213_JW_Orientia_Karp_1_3 178.55 116.86 128450000 21114000 44265000 33090000 7187300 4316200 5963000 0 12514000 7784 1128 6650 46867;46868;46869;46870;46871;46872;46873 29741;29742;29743;29744 29742 4 RGMLNVMLNELTPELNENLGLK 2 Oxidation (M) 2529.2931 0.29309384 1107 Karp_00285 yes yes 0 0 2 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 63.105 63.348 3 4.369E-18 23792 20181213_JW_Orientia_Karp_3_2 186.89 139.06 183360000 31282000 42892000 32756000 0 47056000 22455000 0 6918000 7785 1107 6651 46874;46875;46876;46877;46878;46879 29745;29746;29747;29748;29749;29750;29751 29751 627;628 7 RGMLNVMLNELTPELNENLGLK Oxidation (M) 2513.2982 0.29817922 1107 Karp_00285 yes yes 0 0 1 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 67.524 67.725 3 1.3948E-06 30116 20181213_JW_Orientia_Karp_1_2 136.81 100.01 196130000 32347000 47583000 14411000 0 36537000 18519000 28426000 18309000 7786 1107 6651 46880;46881;46882;46883;46884;46885;46886 29752 29752 627;628 1 RGPNYTSGYGTNSELSNPSETESER Unmodified 2731.1958 0.19575887 570 E7EU85;B4DGH9;E9PFF5;B4DM21;B4DM78;B4DXZ6;P51114-3;P51114-2;P51114 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 1 37.649 37.847 3 5.3709E-08 11683 20181213_JW_Orientia_Karp_1_3 135.55 92.348 7944400 0 0 7944400 0 0 0 0 0 7787 570 6652 46887;46888 29753;29754 29754 2 RGQTCVVHYTGMLEDGK Oxidation (M) 1965.9037 0.90368013 1740 Q5W0X3;Q0VDC6;P62942 FKBP1A Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP1A yes no 0 0 1 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 2 1 1 2 1 30.93 31.403 3;4 0.0087972 8237 20181213_JW_Orientia_Karp_3_1 78.166 52.209 59129000 0 8786600 7465000 10372000 2489400 334320 22244000 7438300 7788 1740 6653 46889;46890;46891;46892;46893;46894;46895;46896;46897 29755;29756;29757 29757 1363 3 RGQTCVVHYTGMLEDGK Unmodified 1949.9088 0.90876551 1740 Q5W0X3;Q0VDC6;P62942 FKBP1A Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP1A yes no 0 0 0 1 By MS/MS By matching By MS/MS 1 1 1 36.242 36.626 3 8.2514E-05 10687 20181213_JW_Orientia_Karp_3_1 207.92 167.43 19872000 0 0 0 0 5898100 3166600 10807000 0 7789 1740 6653 46898;46899;46900 29758;29759 29759 2 RHAEAMESCNLAIK Oxidation (M) 1644.7712 0.7712094 1152;1259;1145 Karp_00478;Karp_01552;Karp_00538;Karp_00993 no no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 23.587 23.997 3 0.00039229 5216 20181213_JW_Orientia_Karp_3_1 133.04 91.215 16093000 0 4595800 0 2226400 2111000 1227200 3395300 2537400 7790 1145;1152;1259 6654 46901;46902;46903;46904;46905;46906 29760;29761;29762;29763;29764;29765 29764 679 6 RHEMPPHIYAITDTAYR Oxidation (M) 2086.0054 0.005443089 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;Q5BKV1 MYH9 Myosin-9 yes no 0 0 1 1 By MS/MS By matching By matching By matching 1 1 1 1 36.185 36.651 4 0.024536 11187 20181213_JW_Orientia_Karp_1_2 54.393 19.064 41781000 0 30397000 0 0 0 793940 10225000 364690 7791 47 6655 46907;46908;46909;46910 29766 29766 38 1 RHFNAPSHIR Unmodified 1233.6479 0.64792186 1039 J3KTJ8;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KSS0;A0A024RBF6 RPL26;hCG_26523 60S ribosomal protein L26 yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 16.964 17.334 3 0.001116 1998 20181213_JW_Orientia_Karp_3_2 113.44 68.287 33475000 6041100 4955400 3713100 3156700 3137000 1662300 2944100 7865100 7792 1039 6656 46911;46912;46913;46914;46915;46916;46917;46918 29767;29768;29769;29770;29771;29772 29772 6 RHGAIGVDAYQK Unmodified 1313.684 0.6840326 1383 Karp_02122 yes yes 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 22.788 23.253 3 0.02602 4006 20181213_JW_Orientia_Karp_3_2 83.53 51.201 11269000 0 4791400 0 2266200 0 0 2724200 1487500 7793 1383 6657 46919;46920;46921;46922 29773 29773 1 RHLSDSALSECR Unmodified 1429.6732 0.67320991 1428 Karp_02381 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 22.11 22.504 3 0.00035527 4564 20181213_JW_Orientia_Karp_3_1 141.34 90.859 19046000 0 7148000 2266600 1830400 1796100 1189900 3163000 1652000 7794 1428 6658 46923;46924;46925;46926;46927;46928;46929 29774;29775;29776;29777;29778;29779;29780 29779 7 RHLTGEFEK Unmodified 1115.5724 0.57235688 705 B5MDF5;J3KQE5;P62826;F5H018;H0YFC6 RAN GTP-binding nuclear protein Ran yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 19.356 19.589 3 0.01051 3709 20181213_JW_Orientia_Karp_1_2 81.771 21.181 18863000 4611500 6515100 4959400 1013400 0 885140 878290 0 7795 705 6659 46930;46931;46932;46933;46934;46935 29781;29782 29782 2 RHPEYAVSVLLR Unmodified 1438.8045 0.80448208 792 CON__P02769 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 41.435 41.765 3 0.00014189 13058 20181213_JW_Orientia_Karp_2_1 156.52 114.9 3573100000 813970000 1192000000 654690000 267600000 126750000 0 515710000 2382600 + 7796 792 6660 46936;46937;46938;46939;46940;46941;46942 29783;29784;29785;29786;29787;29788;29789 29785 7 RHPFCNIVGANAVK Unmodified 1581.8198 0.81981457 1428 Karp_02381 yes yes 0 0 0 1 By matching By matching By MS/MS By MS/MS 1 1 1 1 33.059 33.342 3 0.016406 9096 20181213_JW_Orientia_Karp_3_1 74.46 40.678 114380000 66252000 0 38140000 0 0 0 9983100 0 7797 1428 6661 46943;46944;46945;46946 29790;29791 29790 2 RHPYFYAPELLYYANK Unmodified 2044.0207 0.020682448 792 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 3 3 3 1 1 54.163 54.471 2;3;4 6.9014E-10 18769 20181213_JW_Orientia_Karp_3_2 192.46 152.22 4052600000 671240000 431540000 1040400000 384810000 613060000 708710000 755730 202150000 + 7798 792 6662 46947;46948;46949;46950;46951;46952;46953;46954;46955;46956;46957;46958;46959;46960;46961;46962;46963;46964;46965 29792;29793;29794;29795;29796;29797;29798;29799;29800 29800 7 RHPYFYAPELLYYANK Deamidation (NQ) 2045.0047 0.0046980325 792 CON__P02769 yes yes 0 1 0 1 By matching By MS/MS 1 1 55.954 56.205 4 0.037589 21108 20181213_JW_Orientia_Karp_2_3 42.958 13.866 10246000 0 0 0 0 3471400 6774500 0 0 + 7799 792 6662 46966;46967 29801 29801 1 RHWGGNVLGPK Unmodified 1219.6574 0.65742391 1736 P62424;Q9BY74;Q5T8U2 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 25.633 25.993 3 0.00011858 5884 20181213_JW_Orientia_Karp_3_1 152.54 111.76 26786000 10016000 0 5432800 0 2562600 1253100 5211500 2309700 7800 1736 6663 46968;46969;46970;46971;46972;46973 29802;29803;29804;29805;29806;29807;29808 29806 7 RHYALVDCPGHVDYIK Unmodified 1941.952 0.95195096 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.179 37.47 4 0.0011294 11511 20181213_JW_Orientia_Karp_1_3 108.36 78.634 600600000 271320000 153900000 118930000 0 15271000 0 41184000 0 7801 1176;1244 6664 46974;46975;46976;46977;46978 29809;29810;29811;29812;29813 29811 5 RHYLFDVQR Unmodified 1232.6414 0.6414395 364 Q5QNZ2;Q53GB3;Q08ET0;A8K4W2;P24539 ATP5F1;hCG_39985 ATP synthase F(0) complex subunit B1, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 33.843 34.133 3 0.0028927 9978 20181213_JW_Orientia_Karp_1_2 91.549 54.205 114090000 22759000 16932000 73019000 0 0 0 0 1381200 7802 364 6665 46979;46980;46981;46982;46983 29814;29815;29816;29817;29818;29819;29820 29817 7 RIAAGSGTSVQEVNK Unmodified 1515.8005 0.80051892 1270 Karp_01078 yes yes 0 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 1 1 2 1 25.189 25.519 2;3 0.0025627 5767 20181213_JW_Orientia_Karp_3_1 105.19 65.244 49736000 1344300 18870000 895970 5856900 8280300 310270 14178000 0 7803 1270 6666 46984;46985;46986;46987;46988;46989;46990;46991;46992;46993;46994 29821;29822;29823;29824;29825 29824 5 RIELIIENLDDSVEEFESR Unmodified 2305.1438 0.14377029 1177 Karp_00637 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 71.065 71.185 3 7.6459E-06 28895 20181213_JW_Orientia_Karp_2_3 189.34 135.56 125350000 15194000 13656000 6341400 6519900 26318000 16275000 31764000 9284100 7804 1177 6667 46995;46996;46997;46998;46999;47000;47001;47002 29826;29827;29828;29829;29830;29831 29829 6 RIHELYLPK Unmodified 1167.6764 0.67642802 782 CON__Q9TTE1;CON__A2I7N1;CON__A2I7N0 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 31.881 32.222 3 0.0007826 8452 20181213_JW_Orientia_Karp_2_3 128.6 55.723 20609000 3145700 0 0 2628000 4480200 2264600 8090200 0 + 7805 782 6668 47003;47004;47005;47006;47007 29832;29833;29834;29835 29834 4 RIHGVGFK Unmodified 912.52937 0.52936985 444 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899-3;P62899;P62899-2;B8ZZK4 RPL31 60S ribosomal protein L31 yes no 0 0 0 1 By MS/MS 1 11.848 12.859 2 0.02343 2133 20181213_JW_Orientia_Karp_3_2 120.49 65.702 928480 0 0 0 0 0 0 0 928480 7806 444 6669 47008 29836 29836 1 RIIHQMGAVDAMEFLLDK Oxidation (M) 2102.0653 0.065266154 1333 Karp_01373 yes yes 0 0 1 1 By matching By matching By MS/MS By matching 1 1 1 1 55.499 55.749 3 0.0067699 20747 20181213_JW_Orientia_Karp_2_1 80.585 60.495 20331000 5191800 0 2934900 5107200 7097000 0 0 0 7807 1333 6670 47009;47010;47011;47012 29837 29837 889 1 RIIVLDLSK Unmodified 1055.6703 0.67028001 1113 Karp_00296 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.789 47.109 2 0.010069 14979 20181213_JW_Orientia_Karp_3_2 117.53 29.771 231700000 39080000 79962000 39336000 21611000 15090000 27229000 400450 8991200 7808 1113 6671 47013;47014;47015;47016;47017;47018;47019;47020 29838;29839;29840;29841;29842 29842 5 RILDEIEEHNIK Unmodified 1507.7995 0.79945628 704 B5MCX3;Q15019;Q15019-3;Q15019-2;C9J2Q4;H7C2Y0 SEPT2 Septin-2 yes no 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 39.782 40.095 3 0.00076909 12452 20181213_JW_Orientia_Karp_3_1 128.35 83.988 52118000 0 0 29600000 0 2215000 2916200 17387000 0 7809 704 6672 47021;47022;47023;47024 29843 29843 1 RILMEHIHK Unmodified 1175.6597 0.6597321 1038 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 0 0 0 1 By MS/MS By matching 1 1 20.913 21.037 3 0.02274 4448 20181213_JW_Orientia_Karp_1_1 68.016 39.219 2278300 1095000 1183200 0 0 0 0 0 0 7810 1038 6673 47025;47026 29844 29844 1 RILSGIQVTGK Unmodified 1170.7085 0.70845643 1369 Karp_01981 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 36.021 36.311 2 0.0031386 10876 20181213_JW_Orientia_Karp_1_3 133.91 96.363 183910000 48425000 62940000 52026000 0 5123700 0 15394000 0 7811 1369 6674 47027;47028;47029;47030;47031;47032 29845;29846;29847;29848;29849 29847 5 RILVDASYPNETR Unmodified 1532.7947 0.79470526 1362 Karp_01816 yes yes 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 39.124 39.399 3 0.016647 12442 20181213_JW_Orientia_Karp_1_3 70.628 27.126 47143000 30339000 0 14009000 0 0 541710 2253400 0 7812 1362 6675 47033;47034;47035;47036 29850 29850 1 RINIVPSQIIPANIDESSLPAELPK Unmodified 2713.5014 0.50143035 1137 Karp_00449 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 69.561 69.705 3 1.1647E-06 27520 20181213_JW_Orientia_Karp_3_2 127.54 106.3 196980000 64919000 18787000 48056000 0 9220900 9589300 29778000 16630000 7813 1137 6676 47037;47038;47039;47040;47041;47042;47043 29851;29852;29853;29854;29855 29855 5 RIPEYLAFDDEK Unmodified 1494.7355 0.73545904 1131 Karp_00376 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1 2 1 1 49.068 49.411 2;3 1.2081E-06 18742 20181213_JW_Orientia_Karp_1_1 184.03 128.97 1971900000 225540000 722290000 360450000 439680000 43291000 134680000 2882900 43076000 7814 1131 6677 47044;47045;47046;47047;47048;47049;47050;47051;47052;47053;47054;47055;47056 29856;29857;29858;29859;29860;29861;29862 29856 7 RIPLAEWESR Unmodified 1255.6673 0.6673199 1649 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 1 By matching By MS/MS 1 1 44.199 44.374 3 0.018891 15339 20181213_JW_Orientia_Karp_1_2 90.05 58.764 14323000 8177300 6145700 0 0 0 0 0 0 7815 1649 6678 47057;47058 29863 29863 1 RIQDSDVENILHSDK Unmodified 1767.8751 0.87514042 1366 Karp_01876 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 40.227 40.52 3 2.92E-13 13122 20181213_JW_Orientia_Karp_1_2 265.64 159.34 398180000 88164000 81307000 97337000 68311000 21152000 4458500 37453000 0 7816 1366 6679 47059;47060;47061;47062;47063;47064;47065 29864;29865;29866;29867;29868;29869 29865 6 RIQDSDVENILHSDKDTQESLLPR Unmodified 2807.405 0.40496379 1366 Karp_01876 yes yes 0 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 50.449 50.815 4 0.00034511 17190 20181213_JW_Orientia_Karp_3_1 105.72 73.452 95723000 16244000 24929000 0 10397000 13995000 8723900 15510000 5923100 7817 1366 6680 47066;47067;47068;47069;47070;47071;47072 29870;29871;29872;29873;29874 29873 5 RIQEIIEQLDVTTSEYEK Unmodified 2193.1165 0.11649291 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 2 2 1 1 60.224 60.504 2;3 1.0436E-22 25636 20181213_JW_Orientia_Karp_1_2 215.93 166.3 513000000 112360000 170890000 75996000 35994000 60180000 56212000 1369200 0 7818 81 6681 47073;47074;47075;47076;47077;47078;47079;47080;47081;47082;47083;47084;47085 29875;29876;29877;29878;29879;29880;29881;29882 29876 8 RIQLVEEELDR Unmodified 1398.7467 0.74669243 494;649;859 Q5VU59;Q5HYB6;B2RDE1;P06753-2;P06753-3;P06753-5;P06753-6;J3KN67;P06753-4;M1VPF4;D6R904;P06753;H0YL80;K7EP68;B4DTK3;B4DVY2;V9HW56;P67936;B4DTB1;K7ERG3;K7ENT6;B4DGC2;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951-3;P67936-2;P07951-2;P07951;H0YL52;D9YZV5;D9YZV4;P09493-9;P09493-4;P09493-3;P09493-10;P09493;H0YKX5;H0YKP3;Q8TCG4;C9IZA2;H0YNC7;Q15657;Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;A0A024R5W6;Q59GR8;Q6ZN40;P09493-2;P09493-5;P09493-8;P09493-7;P09493-6 DKFZp686J1372;TPM3;TPM3-ROS1;TPM1;TPM4;HEL-S-108;HEL-S-273;TPM2;TPM2b Tropomyosin alpha-3 chain;Tyrosine-protein kinase receptor;Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain no no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 2 2 1 43.123 43.449 2;3 0.00022427 13750 20181213_JW_Orientia_Karp_2_2 142.19 54.526 182360000 27221000 49401000 7164700 32000000 54131000 0 10399000 2040200 + 7819 494;649;859 6682 47086;47087;47088;47089;47090;47091;47092;47093;47094;47095;47096;47097 29883;29884;29885;29886;29887;29888;29889 29887 6 RIQTYLQSTK Unmodified 1236.6826 0.68263561 461 B2R6S5;P30085-2;P30085 CMPK;CMPK1 UMP-CMP kinase yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 28.313 28.562 2 0.0034944 7714 20181213_JW_Orientia_Karp_1_1 139.38 95.005 10059000 1902500 2480200 4909200 409700 0 357580 0 0 7820 461 6683 47098;47099;47100;47101;47102 29890 29890 1 RIQYFTFNK Unmodified 1215.64 0.64004252 1243 Karp_00910 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 41.804 42.124 2;3 0.0036498 12834 20181213_JW_Orientia_Karp_3_2 140.35 53.172 741710000 180610000 165740000 180570000 26026000 31411000 68759000 73663000 14934000 7821 1243 6684 47103;47104;47105;47106;47107;47108;47109;47110;47111;47112 29891;29892;29893;29894;29895;29896;29897;29898;29899;29900 29900 10 RIQYQLVDISQDNALR Unmodified 1931.0225 0.022473362 830 Q5T123;Q86Z22;D3DPK5;Q9H299 SH3BGRL3;HEL-S-297 SH3 domain-binding glutamic acid-rich-like protein 3 yes no 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.523 52.83 3 0.0071343 19004 20181213_JW_Orientia_Karp_2_2 145.52 88.727 73486000 6455000 4917800 6301700 16877000 21848000 16904000 182730 0 7822 830 6685 47113;47114;47115;47116;47117;47118;47119 29901;29902;29903;29904 29902 3 RISEQFTAMFR Oxidation (M) 1400.6871 0.68706906 1566;1747;1550;602 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;Q6P602;A4UCU2;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;B4DMJ5 TUBB4A;TUBB;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 0 1 1 By matching By MS/MS 1 1 41.105 41.379 3 0.03917 13532 20181213_JW_Orientia_Karp_1_3 43.798 8.1457 28615000 0 20705000 7909600 0 0 0 0 0 7823 1550;1566;1747;602 6686 47120;47121 29905 29905 375 1 RISGLIYEETR Unmodified 1335.7147 0.71466402 447 B2R4R0;P62805;Q0VAS5;Q6B823 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 38.934 39.241 2;3 0.00010981 11865 20181213_JW_Orientia_Karp_2_1 167.11 78.745 12838000000 3332100000 4767800000 3404200000 132200000 176380000 51374000 974380000 0 7824 447 6687 47122;47123;47124;47125;47126;47127;47128;47129;47130;47131;47132;47133;47134;47135 29906;29907;29908;29909;29910 29906 5 RISGLIYEETRGVLK Unmodified 1732.9836 0.98356866 447 B2R4R0;P62805;Q0VAS5;Q6B823 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 45.59 45.773 3 0.0017665 16498 20181213_JW_Orientia_Karp_1_1 142.19 102.17 102840000 19601000 52477000 30764000 0 0 0 0 0 7825 447 6688 47136;47137;47138 29911;29912;29913;29914 29911 4 RISIGGGSCAISGGYGSR Unmodified 1753.853 0.85296519 341;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT6B;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 0 0 1 By MS/MS 1 38.177 38.829 3 0.021659 11839 20181213_JW_Orientia_Karp_3_1 86.222 46.156 7476200 0 0 0 0 0 0 7476200 0 + 7826 341;793;805 6689 47139 29915 29915 1 RITVHINTEYTPIK Unmodified 1683.9308 0.93080481 1332 Karp_01370 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.853 41.213 3 0.0088587 13406 20181213_JW_Orientia_Karp_1_3 109.95 63.25 99868000 20874000 42785000 22879000 3206600 0 0 6295400 3827200 7827 1332 6690 47140;47141;47142;47143;47144;47145 29916 29916 1 RIVELGTPDVWNALAK Unmodified 1780.9836 0.98356866 1169 Karp_00623 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 61.451 61.743 3 0.0033511 26132 20181213_JW_Orientia_Karp_1_3 102.29 73.662 19297000 0 4093800 8190400 0 3645500 2461300 0 905900 7828 1169 6691 47146;47147;47148;47149;47150;47151 29917;29918;29919;29920 29919 3 RIYPAIDINK Unmodified 1201.6819 0.68190733 1333 Karp_01373 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 41.222 41.552 2 0.00043318 13616 20181213_JW_Orientia_Karp_1_3 148.94 85.379 510250000 152340000 135780000 81066000 28832000 41461000 0 55187000 15589000 7829 1333 6692 47152;47153;47154;47155;47156;47157;47158 29921;29922;29923;29924;29925;29926;29927 29923 7 RKASGPPVSELITK Unmodified 1481.8566 0.85657723 1605;291 P16402;Q4VB24;B2R984;A3R0T8;P10412;A3R0T7 HIST1H1D;HIST1H1E Histone H1.3;Histone H1.4 no no 0 0 0 2 By matching By MS/MS By MS/MS 1 1 1 32.269 32.452 3 0.0028702 9017 20181213_JW_Orientia_Karp_1_3 141.06 108.13 114620000 37586000 50824000 26213000 0 0 0 0 0 7830 1605;291 6693 47159;47160;47161 29928;29929 29929 2 RKATGPPVSELITK Unmodified 1495.8722 0.8722273 1604 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 2 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 32.947 33.237 3 0.010813 9499 20181213_JW_Orientia_Karp_1_2 170.74 137.51 412630000 199140000 94471000 111690000 0 1427000 0 5906700 0 7831 1604 6694 47162;47163;47164;47165;47166 29930 29930 1 RKEDIPLLVQHFVQQLAK Unmodified 2161.2372 0.23715758 1358 Karp_01807 yes yes 0 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 63.289 63.567 4 0.00040276 27688 20181213_JW_Orientia_Karp_1_2 122.96 96.883 59732000 0 4595900 44472000 0 0 6687200 0 3977300 7832 1358 6695 47167;47168;47169;47170 29931;29932;29933;29934 29931 4 RKFDSETSNAMSDLLGGGK Oxidation (M) 2027.9582 0.95821812 1158 Karp_00578 yes yes 0 0 1 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 34.741 35.041 3 0.0053944 9987 20181213_JW_Orientia_Karp_3_1 117.3 83.021 29681000 5627100 5345100 10840000 0 0 0 7868500 0 7833 1158 6696 47171;47172;47173;47174;47175 29935;29936;29937;29938 29938 687 4 RKGTDVNVFNTILTTR Unmodified 1834.0061 0.006095016 1548 Q5TZZ9;P04083;B5BU38;B4DL19 ANXA1 Annexin;Annexin A1 yes no 0 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 48.924 49.276 3 0.033997 17007 20181213_JW_Orientia_Karp_2_2 109.04 85.561 30186000 0 5142300 4139200 6893500 3298800 4967800 0 5744200 7834 1548 6697 47176;47177;47178;47179;47180;47181 29939 29939 1 RKLDGETTDLQDQIAELQAQIDELK Unmodified 2869.4669 0.46689534 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 2 By MS/MS By MS/MS 1 1 69.197 69.397 3 0.0027605 31307 20181213_JW_Orientia_Karp_1_2 99.378 64.919 16323000 0 6571300 0 0 0 0 9751500 0 7835 944 6698 47182;47183 29940;29941 29940 2 RKPADLQNLAPGTHPPFITFNSEVK Unmodified 2776.466 0.4660479 1863 Q6FIC5;Q9Y696;B4DWC4;Q9NVF8;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 51.695 52.04 4 0.03491 17964 20181213_JW_Orientia_Karp_3_1 44.541 3.2488 97132000 36485000 0 28703000 6789100 4812800 4602600 11531000 4209500 7836 1863 6699 47184;47185;47186;47187;47188;47189;47190 29942;29943;29944;29945 29945 3 RKPDTIEVQQMK Oxidation (M) 1487.7766 0.77661235 1630;457 V9HWC0;P26038;Q6PJT4;B7Z4C7;Q6PKD3;Q05CU6;B0YJ88;P35241;P35241-5;Q9UJZ6;Q9UK20;B7Z2S7;P35241-4;Q9UJZ8;Q9UJZ7;E7EQR4;Q6NUR7;B2R6J2;P15311;B7Z437;V9HW42;J7M2B1 HEL70;MSN;RDX;EZR;HEL-S-105;EZR-ROS1 Moesin;Radixin;Ezrin;Tyrosine-protein kinase receptor no no 0 0 1 2 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 20.438 20.627 3 0.021144 3952 20181213_JW_Orientia_Karp_1_3 119.21 92.244 44848000 6548000 7825300 12497000 10267000 0 7710500 0 0 7837 1630;457 6700 47191;47192;47193;47194;47195 29946;29947 29947 302 2 RKTPEELLR Unmodified 1140.6615 0.66150624 100 M0R1L7;A0A024R4S0;O43633;M0QXX8 CHMP2A Charged multivesicular body protein 2a yes no 0 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 24.704 25.14 3 0.0014866 4734 20181213_JW_Orientia_Karp_3_2 141.91 59.08 20703000 0 2862000 1067800 3674100 2681100 0 7149900 3268000 7838 100 6701 47196;47197;47198;47199;47200;47201 29948;29949;29950;29951 29951 4 RKTVTAMDVVYALK Unmodified 1593.8912 0.89124818 447 B2R4R0;P62805 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 2 By matching By MS/MS By matching By matching 1 1 1 1 46.357 46.557 3 0.037478 16609 20181213_JW_Orientia_Karp_1_2 98.676 65.403 136040000 48212000 50986000 34742000 0 0 2097200 0 0 7839 447 6702 47202;47203;47204;47205 29952 29952 1 RKWEAAHEAEQLR Unmodified 1622.8277 0.82773672 268 R9WYX8;Q4A1H0;M1KE04;L7X986;I2E8C4;E7BBA1;D1MYY8;C7U1K2;C7E539;C6H0N8;B7VBV1;B6VA02;B6ECH6;B6ECH2;A7MAK2;D0AB29;A5PHP7;Q6IVJ9;Q5SRN7;Q861B7;F6IQV8;F6IQV7;B4E2X4;X5MFE4;A0A060VCY6;A0A060VCY5;Q29840;X5D2K4;D5H3U2;D5H3U1;B2R7U3;B1PKY1;A9YWM1;Q5SRN5;P04439;A0ZXY8;E1B2D6;J7SBK9;D0W032;E1Y422;G5CJS3;B7VCC4;W6CHX3;Q7YPW4;U5YMP4;F6IQV6;A7DZQ5;X5MPH3;X5MFD7;A0A060VHD0;A7MAP4;I0J2M4;A1Z1D7;Q2A688;A0A060VD16;V9N3G0;V9N2U2;U5IQK9;S5CRT1;S4TZI2;S4TZE1;R9R080;R9QZR4;R4I501;R4I3H2;Q9MYA8;Q9GJM2;Q95IY8;Q8HWS5;Q6V117;Q6UJZ9;Q5XLD1;Q5JZM7;Q5FYV2;Q45FD6;Q1M2R8;Q05G01;O78081;M9WP47;M9PNR0;M9PAA7;M9PAA4;M9P8Z4;M9P8Q7;M9P8G3;M4YQG8;M4SNZ1;M4N7U4;M4N6L9;M4N6H6;M1SQT4;M1FYE6;M1FYE3;M1FXT8;M1FWW6;M1FUQ9;M1F5P2;M1F4C0;L7PHV2;L7PHU7;L7PH16;L7PH13;L7PH07;L7PEX4;L7PEW5;L0BVP5;K9LDJ0;K9LCM8;K9LC07;K9LC01;K9L7Y8;K7WPD7;K7P600;K7P5W6;K7P5V7;K7P5U2;K7P5R4;K7P5E0;K7P5B6;K7P562;K7P560;K7P558;K0A058;J9UP83;J9TNR8;J9PWV5;J9PWL3;J7GM07;J7FNZ2;J7F8L2;J7F4Y9;I6SJ64;I6RGW8;I6RGW0;I6QU16;I6NWN3;I6NS25;I6NS19;I6M537;I3UI58;I3UI47;I3QHQ4;I2B305;I2B2Z9;I1W1L8;H9C5F8;H9C5F6;H9BQ78;H6V073;H6UV72;H6UV69;H6UV68;H6UV64;H2DML9;H2BE80;H2BDP5;G9I2J6;G9HW64;G9HW24;G9HRL1;G3DR81;G1EPH8;G1EPG4;G1EPG0;G1EPD3;G1EPB3;G1EPB1;G1EP98;G1EP96;G1EP95;G1EP93;G1EP88;G1EP78;G1EP71;G1EP55;G1EP53;G1EP50;G1EP19;G1EP18;G1EP05;G1ENY5;G1ENC7;G0ZMG9;G0ZMG4;G0ZMG3;G0ZMF4;G0ZDS9;G0WVA6;G0WVA0;F8RHD6;F8RHD1;F8RHC2;F8RHB9;F8R8I1;F8R8I0;F8R119;F8R116;F8R115;F8R110;F8R107;F8R103;F6KRP1;F6KRM4;F6KRL8;F6KRK7;F6KRJ5;F4YU26;F4YU20;F2X609;F2X604;F2X5Y9;F2X5Y4;F2X5Y0;F2X5X9;F2VP64;F2VP60;F2VP51;F2VNJ6;F2VNJ4;F2VNJ2;F2VNJ1;F2VNH3;F2VNH2;F2VNH0;F2VNG0;F2VNF7;F2VNF2;F2VNE0;F2VND5;F2VND0;F2VNC4;F1AQL5;E9LY14;E9LY02;E9LY00;E8ZF52;E7BY93;E7BY85;E5DCM4;E5DCM2;E5DCM1;E5DCM0;E3SWG7;E3SWG4;E3SG86;E3SG82;E2GJD4;E2GJD3;E2DH82;E2DH80;E2DH75;E2DH72;E2D5M3;E2D5L9;E2D5L6;E2D5K9;E0YTJ0;E0YTI8;E0YTI1;E0X9K3;E0X9K2;E0WBY8;E0WBY5;E0WBX4;E0WBX1;E0WBW7;D9IFQ7;D7NSP9;D7NSP0;D7NSN9;D7NPL2;D7NPA6;D7NPA3;D7NP98;D7NP92;D7NP85;D7NP83;D7NNU1;D7NNT9;D7NNT6;D7NNT3;D7NNS8;D7NNS2;D7NNR5;D7NNR3;D7NNP4;D7NNN7;D7NNM6;D6MLN9;D6MLN8;D6MLN3;D6MLM4;D6MLL1;D6MLK6;D6MLK2;D6MLJ4;D6MLJ1;D6MLI3;D6ML63;D6ML56;D6ML55;D6ML54;D6ML50;D6ML46;D6ML44;D6ML42;D6ML40;D6ML35;D6ML33;D6ML18;D6ML17;D6ML16;D6ML10;D6ML09;D6ML06;D6ML04;D6ML01;D6MKY9;D6MJF7;D5M8G4;D5M8G1;D5M8E9;D5M8E4;D5L9A3;D5G2J2;D5FZV4;D5FZI6;D5FIG9;D5FIG8;D5FIG2;D5FHQ9;D5FHN7;D5FHM5;D5FHM3;D5FHM1;D5FHK5;D5FHG0;D5FHF9;D3U484;D3U454;D3U442;D3JT97;D2SSL9;D0RAY3;D0EZK0;D0EZJ9;C9WEL9;C9WEL6;C9WEL3;C9WEL2;C9WEL1;C9E846;C9E1E8;C9E1E7;C8XTP8;C8XTP7;C8XTP2;C8XTN9;C8XTN8;C8XTN7;C8CH74;C8CH66;C7E580;C6K4J6;C6K4I6;C6K4I1;C6K4H8;C6K4H6;C6K4H4;C6K4H3;C6K4H0;C6K4G4;C6K4G0;C6K4F7;C6K4E3;C5J029;C5J027;C5IZR4;C5IZR2;C5IZQ6;C5IZQ3;C4PFZ1;C4PFY9;C0M144;B8YCR7;B8Y1X8;B1PQ33;A7E1C1;A4USG8;A2VBX5;F4NC94;Q3BK35;K7P5I9;G1EP09;F6KRN6;F2VYH3;F2VNH9;E5G0Y7;D5FHR9;Q000J8;K9LC23;I6QU03;E7DZZ8;E2GJG4;D7NPL4;D5FHR2;C9E1D6;C6K4J0;C6K4I3;Q9TQF3;Q9TQF2;G1EP75;F8RHD8;F8R126;F2VNF1;E5D6K2;E3SWG9;D7NQU0;D6MLP4;D6MLN5;D6ML13;D5FHK0;D5FHH3;C7C5G4;C0M140;B8Y6A7;B5ATU8;B5ATU6;Q9TQG6;Q9TQ28;Q9TQ26;Q9TPV5;Q9TPS9;I3QHR2;H8XVX1;H6V077;G1EPH5;F6KRP7;D6ML07;D2DKV2;C9E848;C6K4E4;B1PL02;Q208P6;Q1G4P0;I6QU20;I3UI62;H2BE91;G1ENE6;G0X8R3;F2VNJ3;F2VNI6;E5G0Y5;D7NSP6;D7NNS3;D7NNN5;D7NNN1;D7NNN0;D7NNM8;D7NNM7;D7NNM2;D6MLH8;D6MLH5;D6MLH3;D6MLH2;D6MLH1;D5L999;D2JZZ8;D1MEQ1;A7E1B9;A5Z1D4;B4DVB9;B4DVC4;K7P5E7;O62920;O78168;Q30177;O78086;U5YEP7;U5YEH3;U5YEG3;U5YBM8;Q9UEX5 HLA-A;HLA;HLA-A*03 HLA class I histocompatibility antigen, A-3 alpha chain no no 0 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 24.129 24.489 4 0.0051869 5971 20181213_JW_Orientia_Karp_1_1 104.94 46.155 20690000 3672100 0 3617700 1471700 3187300 0 4894100 3847500 7840 268 6703 47206;47207;47208;47209;47210;47211 29953;29954;29955;29956;29957 29953 5 RLAENSASSDDLLVAEVGISDYGDK Unmodified 2623.2613 0.26131924 1643 V9HW71;P30040 HEL-S-107;ERP29 Endoplasmic reticulum resident protein 29 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 59.656 60.018 3 0.0023804 22900 20181213_JW_Orientia_Karp_2_2 71.696 44.567 23260000 0 6299400 0 4571100 6874800 4427100 0 1087300 7841 1643 6704 47212;47213;47214;47215;47216 29958;29959 29959 2 RLAHSQIALSALTVTDAAQQFDVK Unmodified 2582.3816 0.38164957 1414 Karp_02240 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 2 56.94 57.317 3;4 0.0014229 23654 20181213_JW_Orientia_Karp_1_2 89.631 68.466 260990000 0 22419000 66356000 40865000 54984000 36976000 6358500 33035000 7842 1414 6705 47217;47218;47219;47220;47221;47222;47223;47224;47225;47226;47227;47228 29960;29961;29962;29963;29964;29965;29966;29967 29960 8 RLAPEYEAAATR Unmodified 1346.6943 0.69426293 516;999 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98;H7BZJ3 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 2 1 1 1 1 1 1 31.049 31.419 2;3 0.0038853 8557 20181213_JW_Orientia_Karp_1_3 138.25 87.054 55455000 23859000 11339000 9784300 3067800 1584600 716930 3504300 1599300 7843 516;999 6706 47229;47230;47231;47232;47233;47234;47235;47236;47237 29968;29969;29970;29971 29970 4 RLDAVVYR Unmodified 990.56106 0.56106391 1131 Karp_00376 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.889 33.247 2 0.0036972 8787 20181213_JW_Orientia_Karp_2_1 185.55 102.26 1201500000 183860000 335260000 392180000 101550000 78357000 23957000 42520000 43822000 7844 1131 6707 47238;47239;47240;47241;47242;47243;47244;47245 29972;29973;29974;29975;29976;29977;29978;29979 29975 8 RLDQELDFILSQQK Unmodified 1731.9155 0.91554867 15 M0QXN5;A0A024QZF1;P37198 NUP62;hCG_19665 Nuclear pore glycoprotein p62 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 61.622 61.855 3 0.0017699 26609 20181213_JW_Orientia_Karp_1_2 171.36 92.269 38105000 10773000 2737100 10278000 996730 10192000 3128300 0 0 7845 15 6708 47246;47247;47248;47249;47250;47251 29980;29981;29982;29983 29980 4 RLDYITAEIK Unmodified 1220.6765 0.6764876 1503 Q5STK2;O15212 PFDN6 Prefoldin subunit 6 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 44.109 44.454 2 2.6848E-05 15819 20181213_JW_Orientia_Karp_1_1 169.65 87.871 242930000 70618000 65351000 44244000 2899300 0 23479000 34175000 2162000 7846 1503 6709 47252;47253;47254;47255;47256;47257;47258;47259 29984;29985;29986;29987;29988;29989 29984 6 RLEAELAAHEPAIQGVLDTGK Unmodified 2217.1753 0.17534519 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 51.082 51.332 3 0.026958 19584 20181213_JW_Orientia_Karp_1_2 49.559 21.476 42810000 10548000 11338000 10715000 3775400 3438300 2994800 0 0 7847 316 6710 47260;47261;47262;47263;47264;47265 29990 29990 1 RLEAGDHPVELLAR Unmodified 1574.8529 0.85288884 496 F5GY03;B4DRV4;B2RDL6;D3DQH8;P09486 SPARC SPARC yes no 0 0 0 1 By MS/MS 1 39.462 39.713 3 0.0016525 12340 20181213_JW_Orientia_Karp_2_3 125.84 89.84 0 0 0 0 0 0 0 0 0 7848 496 6711 47266 29991 29991 1 RLEISATDGDIFIYQK Unmodified 1867.968 0.96797818 1058 Karp_00002 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 57.281 57.582 3 0.0016221 24232 20181213_JW_Orientia_Karp_1_1 152.07 114.89 112400000 45305000 25341000 15107000 3445800 9384400 10169000 0 3645100 7849 1058 6712 47267;47268;47269;47270;47271;47272;47273 29992 29992 1 RLENNHAQLLR Deamidation (NQ) 1363.732 0.73204542 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 3 3 2 2 28.134 28.47 3 9.6372E-08 6867 20181213_JW_Orientia_Karp_1_3 191.33 112.64 425290000 117750000 89292000 105760000 20748000 25474000 15634000 38216000 12413000 7850 345 6713 47274;47275;47276;47277;47278;47279;47280;47281;47282;47283;47284;47285;47286;47287;47288;47289;47290;47291 29993;29994;29995;29996;29997;29998;29999;30000;30001;30002;30003;30004 29997 134;135 11 RLENNHAQLLR Unmodified 1362.748 0.74802984 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 23.723 24.055 3 0.00016402 5274 20181213_JW_Orientia_Karp_1_3 185.99 113.9 498730000 905680 154560000 68479000 44419000 53591000 26140000 81024000 69605000 7851 345 6713 47292;47293;47294;47295;47296;47297;47298;47299 30005;30006;30007;30008;30009 30006 5 RLEQEAFGAADSEGTGAPSWRPQK Unmodified 2587.2415 0.24152727 1484 M0R148;Q8IUR2;Q5U651 RASIP1 Ras-interacting protein 1 yes no 0 0 0 2 By MS/MS By MS/MS By matching By matching 1 2 1 1 43.038 43.42 3;4 0.0011858 14608 20181213_JW_Orientia_Karp_1_3 110.03 72.057 29824000 0 10971000 13160000 0 0 0 5088900 603520 7852 1484 6714 47300;47301;47302;47303;47304 30010;30011;30012;30013 30011 3 RLFAQLAGDDMEVSATELMNILNK 2 Oxidation (M) 2710.3306 0.33060156 1552 P04632;K7ELJ7;K7EM73;K7EIV0;A0A075B7C0;U3KQE2 CAPNS1 Calpain small subunit 1 yes no 0 0 2 1 By matching By matching By matching By MS/MS 1 1 1 1 66.884 67.198 3 0.012849 26045 20181213_JW_Orientia_Karp_3_2 62.823 35.18 23089000 0 16251000 0 3282900 0 0 1622300 1932700 7853 1552 6715 47305;47306;47307;47308 30014 30014 1163;1164 0 RLGADVTVVER Unmodified 1213.6779 0.67788459 1066 Karp_00014 yes yes 0 0 0 1 By MS/MS 1 36.116 36.466 3 0.033421 11067 20181213_JW_Orientia_Karp_1_2 69.451 11.081 0 0 0 0 0 0 0 0 0 7854 1066 6716 47309 30015 30015 1 RLGAPQQPGPGPPPSR Unmodified 1610.8641 0.86412223 548 B3KY04;Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1 30.819 31.158 3 0.030476 8881 20181213_JW_Orientia_Karp_1_1 108.36 84.005 148660000 62786000 35520000 3984800 6023100 0 0 37331000 3018800 7855 548 6717 47310;47311;47312;47313;47314;47315;47316;47317 30016;30017 30016 2 RLGPGGLDPVEVYESLPEELQK Unmodified 2424.2537 0.25365509 146 A0A024R7B7;Q16543;A1L0W4;K7EQA9;Q6FG59;K7EIU0 CDC37;MBD5 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 68.248 68.418 3 1.4717E-05 30507 20181213_JW_Orientia_Karp_1_2 127.01 97.979 132110000 30489000 11660000 50659000 0 0 5879200 33426000 0 7856 146 6718 47318;47319;47320;47321;47322 30018;30019;30020 30019 3 RLGSLVDEFK Unmodified 1162.6346 0.63462279 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;P12956-2;F5H1I8;B4E356;Q6IC76 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 45.103 45.437 2 0.0035848 16352 20181213_JW_Orientia_Karp_1_1 128.6 16.863 59699000 27896000 26219000 0 0 0 0 5583300 0 7857 48 6719 47323;47324;47325 30021;30022 30021 2 RLGTSVWGHEK Unmodified 1268.6626 0.66256887 1131 Karp_00376 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 1 2 2 24.963 25.364 3 0.00023965 5725 20181213_JW_Orientia_Karp_3_1 145.14 86.437 371960000 52538000 89544000 47089000 47748000 35909000 22613000 55853000 20661000 7858 1131 6720 47326;47327;47328;47329;47330;47331;47332;47333;47334;47335;47336;47337 30023;30024;30025;30026;30027;30028 30028 6 RLHFNVIPK Unmodified 1122.6662 0.66619769 1118 Karp_00308 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.232 34.612 3 0.00034798 9774 20181213_JW_Orientia_Karp_3_1 150.36 48.3 238790000 42665000 123270000 0 16318000 21059000 5793900 11496000 18188000 7859 1118 6721 47338;47339;47340;47341;47342;47343;47344;47345 30029;30030;30031;30032;30033;30034;30035;30036 30035 8 RLIDLHSPSEIVK Unmodified 1505.8566 0.85657723 1718 P60866;P60866-2;G3XAN0 RPS20 40S ribosomal protein S20 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.584 43.904 3 0.00013745 14873 20181213_JW_Orientia_Karp_1_3 159.12 98.434 310690000 76934000 78415000 115630000 10187000 7304900 8546400 10655000 3011000 7860 1718 6722 47346;47347;47348;47349;47350;47351;47352;47353 30037;30038;30039;30040;30041;30042;30043 30038 7 RLIEDTEDWRPR Unmodified 1584.8009 0.80085327 257;732 A0A024RDE8;Q96HC4;F5H7Y0;Q96HC4-7;Q96HC4-4;Q96HC4-6;H0Y8Y3;Q4W5K9;Q96HC4-3;Q96HC4-2;H0YBI4;B7Z8X5;Q59FC9 PDLIM5;LIM PDZ and LIM domain protein 5 no no 0 0 0 2 By matching By MS/MS By MS/MS By matching 1 1 1 1 38.854 39.092 3 0.012393 11354 20181213_JW_Orientia_Karp_2_2 92.781 34.571 43066000 25674000 0 0 8636000 4225600 4530900 0 0 7861 257;732 6723 47354;47355;47356;47357 30044;30045 30045 1 RLIGLPGDTIK Unmodified 1181.7132 0.71320746 1194 Karp_00806 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 45.13 45.36 2 0.00096035 14816 20181213_JW_Orientia_Karp_2_2 154.85 67.668 233630000 74832000 64631000 42221000 29817000 22131000 0 0 0 7862 1194 6724 47358;47359;47360;47361;47362 30046;30047;30048;30049 30049 4 RLIVDVIR Unmodified 982.62875 0.62874955 235 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 44.367 44.711 2 0.019116 15601 20181213_JW_Orientia_Karp_1_2 139.97 47.78 94227000 37061000 33931000 16080000 1550600 0 2624600 2223600 755760 7863 235 6725 47363;47364;47365;47366;47367;47368;47369 30050;30051 30050 2 RLIVIASSTPQTIEALMK Oxidation (M) 1986.1183 0.11834758 1243 Karp_00910 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.567 54.833 3 0.00050578 21951 20181213_JW_Orientia_Karp_1_2 111.58 80.536 110040000 14659000 23802000 38206000 8810000 12022000 12545000 0 0 7864 1243 6726 47370;47371;47372;47373;47374;47375 30052;30053;30054;30055;30056;30057 30053 804 6 RLIVIASSTPQTIEALMK Unmodified 1970.1234 0.12343296 1243 Karp_00910 yes yes 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 62.252 62.493 3 0.010577 27273 20181213_JW_Orientia_Karp_1_1 114.58 92.696 50790000 17753000 5432800 15509000 0 0 10157000 0 1938500 7865 1243 6726 47376;47377;47378;47379;47380 30058;30059;30060 30058 3 RLLDQIVEK Unmodified 1112.6554 0.65535823 638 B4E0X8;B4DWL1;E9PEB5;B4DT31;Q96AE4;Q96AE4-2;Q6PJY1;Q59FU3;C9JSZ1 FUBP1 Far upstream element-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 40.799 41.129 2 0.002296 12478 20181213_JW_Orientia_Karp_2_2 157.34 82.302 109700000 28637000 32736000 15733000 10339000 7221700 0 10435000 4599800 7866 638 6727 47381;47382;47383;47384;47385;47386;47387 30061;30062;30063;30064;30065;30066 30065 6 RLLDYSLHK Unmodified 1143.64 0.64004252 250 A0A024RD07;Q9BT09 TNRC5;CNPY3 Protein canopy homolog 3 yes no 0 0 0 1 By matching By MS/MS 1 1 34.016 34.141 3 0.00083957 8777 20181213_JW_Orientia_Karp_2_2 120.45 62.903 5640700 4640300 0 0 0 1000400 0 0 0 7867 250 6728 47388;47389 30067 30067 1 RLLEDGEDFNLGDALDSSNSMQTIQK Oxidation (M) 2911.3505 0.35054496 208 B2RA03;A0A024RAY2;P05783;I6L965 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 1 1 By MS/MS By matching By matching 1 1 1 60.312 60.512 3 0.0088718 25971 20181213_JW_Orientia_Karp_1_1 54.152 23.194 10651000 5741900 2570600 0 0 2338400 0 0 0 7868 208 6729 47390;47391;47392 30068 30068 159 1 RLLEGEDAHLSSSQFSSGSQSSR Unmodified 2464.1579 0.15785722 790 CON__P02533;P02533;A0A024R1X6;Q13092;CON__Q61782 KRT14;K14 Keratin, type I cytoskeletal 14 yes no 0 0 0 1 By matching By MS/MS 1 1 38.161 38.436 4 0.02638 11494 20181213_JW_Orientia_Karp_2_1 42.639 21.633 9895200 6280900 0 0 3614300 0 0 0 0 + 7869 790 6730 47393;47394 30069 30069 1 RLLLQLEATK Unmodified 1183.7289 0.72885752 930 V9HW58;Q53H88;F5H2S7;Q13561;Q13561-3;Q13561-2;A8K8J9;F8W1I6;B3KTX4;F8VW18;H0YI98 HEL-S-77;DCTN2 Dynactin subunit 2 yes no 0 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.193 44.514 2 0.014145 14620 20181213_JW_Orientia_Karp_2_1 109.83 75.657 43240000 8994500 12892000 6279200 2151700 3435100 5611500 3705200 171250 7870 930 6731 47395;47396;47397;47398;47399;47400;47401;47402 30070 30070 1 RLLSCIITTK Unmodified 1203.7009 0.70092821 1449 Karp_02529 yes yes 0 0 0 1 By matching By MS/MS By matching By MS/MS 1 1 1 1 40.903 41.228 2 0.0047146 13399 20181213_JW_Orientia_Karp_1_3 102.06 52.639 27400000 11056000 0 10098000 1372100 0 0 4873900 0 7871 1449 6732 47403;47404;47405;47406 30071;30072 30071 2 RLNDFASTVR Unmodified 1177.6204 0.62036971 991 H3BNX8;P20674;H3BRM5;H3BV69 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 33.847 34.299 2 0.00018298 9927 20181213_JW_Orientia_Karp_1_3 157.78 73.565 14699000 0 0 5627700 1319600 2124900 0 4778700 848190 7872 991 6733 47407;47408;47409;47410;47411 30073 30073 1 RLNNYVDPLELFNK Deamidation (NQ) 1734.8941 0.89408495 1123 Karp_00323 yes yes 0 1 0 1 By MS/MS By MS/MS By matching 2 1 1 68.146 68.333 3 0.007441 30833 20181213_JW_Orientia_Karp_1_1 96.866 33.575 9490500 5465300 0 0 0 3074800 0 0 950460 7873 1123 6734 47412;47413;47414;47415 30074;30075 30074 503;504 2 RLNNYVDPLELFNK Unmodified 1733.9101 0.91006937 1123 Karp_00323 yes yes 0 0 0 1 By MS/MS 1 63.12 63.371 3 0.00090732 24514 20181213_JW_Orientia_Karp_2_2 126.32 75.033 5049200 0 0 0 0 5049200 0 0 0 7874 1123 6734 47416 30076 30076 1 RLPDAHSDYAR Unmodified 1299.632 0.63199703 1949 Q96PK6;B4DNG4 RBM14 RNA-binding protein 14 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 23.303 23.69 3 0.025874 5155 20181213_JW_Orientia_Karp_1_3 62.694 25.847 23542000 0 7309500 5917100 1617500 2094600 1464100 2490000 2649200 7875 1949 6735 47417;47418;47419;47420;47421;47422;47423 30077 30077 1 RLPENLYNDR Unmodified 1288.6524 0.65239812 1599 P14927;E5RHG9;B7Z2R2;P14927-2 UQCRB Cytochrome b-c1 complex subunit 7 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 34.698 34.998 2 0.0018916 10210 20181213_JW_Orientia_Karp_1_3 137.46 65.767 25860000 6827800 4670200 11459000 0 0 0 2903200 0 7876 1599 6736 47424;47425;47426;47427 30078;30079;30080 30080 3 RLPGAIDVIGQTITISR Unmodified 1809.0472 0.047231549 1872 Q6UN15-4;Q6UN15-3;Q6UN15-5;Q6UN15;B4DTW7 FIP1L1 Pre-mRNA 3'-end-processing factor FIP1 yes no 0 0 0 1 By MS/MS 1 61.702 61.953 3 0.013864 23924 20181213_JW_Orientia_Karp_2_2 76.158 61.854 6540600 0 0 0 0 6540600 0 0 0 7877 1872 6737 47428 30081 30081 1 RLPGDIQVVPIGVGPNANVQELER Unmodified 2569.3976 0.39763399 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 63.232 63.468 3 1.6676E-36 27528 20181213_JW_Orientia_Karp_1_2 220.55 196.32 598160000 218200000 188100000 140370000 3234700 29801000 18150000 306000 0 7878 1466;1549 6738 47429;47430;47431;47432;47433;47434;47435 30082;30083;30084;30085;30086;30087 30083 6 RLPGDIQVVPIGVGPNANVQELER Deamidation (NQ) 2570.3816 0.38164957 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 1 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 66.226 66.342 3 2.2214E-28 29145 20181213_JW_Orientia_Karp_1_2 196.78 153.62 75338000 45561000 15840000 13937000 0 0 0 0 0 7879 1466;1549 6738 47436;47437;47438 30088;30089;30090 30089 992 3 RLPIYNYK Unmodified 1065.5971 0.59711507 1337 Karp_01411 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 35.631 36.004 3 0.042935 11387 20181213_JW_Orientia_Karp_1_1 55.37 32.63 20294000 12563000 4892200 0 0 1929600 0 676640 231830 7880 1337 6739 47439;47440;47441;47442;47443 30091 30091 1 RLQAAGNAVK Unmodified 1026.5934 0.59342667 2016 Q9Y490;Q9Y4G6;G1UI21 TLN1;TLN2 Talin-1;Talin-2 yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 17.783 18.013 2 0.019401 3393 20181213_JW_Orientia_Karp_1_1 104.06 31.918 7418900 2097400 2364400 2069600 376700 0 0 510820 0 7881 2016 6740 47444;47445;47446;47447;47448 30092 30092 1 RLQAMQKR Oxidation (M);2 Deamidation (NQ) 1047.5495 0.54951295 597 E7ESC5;B4DM14;F1SW65;Q96AQ1-2;Q96LY2-2;Q96AQ1;Q96LY2 CCDC74B;CCDC74AV2;CCDC74A Coiled-coil domain-containing protein 74A;Coiled-coil domain-containing protein 74B yes no 0 2 1 2 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 21.55 21.895 2 0.034068 4465 20181213_JW_Orientia_Karp_1_2 79.939 7.06 138850000 29450000 26845000 35148000 13137000 6634700 9457300 9470600 8704400 7882 597 6741 47449;47450;47451;47452;47453;47454;47455;47456 30093 30093 1532;1533 0 RLQEALER Unmodified 1013.5618 0.56179219 622 B4DPW5;B7Z6G4;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682;E9PGZ1;Q9NYG1;C9J813;Q05DR4;Q6P707;Q6PJM5;C9JEK3 CALD1 Caldesmon yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.397 24.73 2 8.1074E-07 4529 20181213_JW_Orientia_Karp_3_2 215.88 47.429 95051000 5626000 20887000 8144500 13459000 17991000 9412400 11866000 7664300 7883 622 6742 47457;47458;47459;47460;47461;47462;47463;47464 30094;30095;30096;30097;30098;30099;30100 30100 7 RLQQENMNLLSDARSAR Oxidation (M);3 Deamidation (NQ) 2019.9644 0.96436614 854 Q86YH1;Q6PAV0;O14997;Q9UI01;Q6DCA5;D6W5D1;Q3V6T2-5;Q3V6T2-4;Q3V6T2-2;Q3V6T2-3;Q3V6T2 CCDC88A;KIAA1212 Girdin yes no 0 3 1 2 By matching By matching By MS/MS 1 1 1 45.848 45.964 3 0.038297 15120 20181213_JW_Orientia_Karp_2_2 42.095 9.7539 92070000 20837000 0 29643000 0 41590000 0 0 0 7884 854 6743 47465;47466;47467 30101 30101 1681 0 RLQQLQQLK Unmodified 1153.6931 0.69314072 1069 Karp_00038 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 2 29.627 29.973 2 1.6751E-05 7009 20181213_JW_Orientia_Karp_2_1 204.65 124.48 4596800000 1142700000 1900500000 706540000 235070000 199080000 195460000 217410000 0 7885 1069 6744 47468;47469;47470;47471;47472;47473;47474;47475;47476;47477;47478;47479 30102;30103;30104;30105;30106;30107;30108;30109 30106 8 RLSALGPGGLNR Unmodified 1209.6942 0.69420335 1170 Karp_00624 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 35.261 35.634 3 0.0025357 11192 20181213_JW_Orientia_Karp_1_1 107.09 77.873 128960000 60353000 37738000 15354000 1867900 7733800 0 3573400 2340400 7886 1170 6745 47480;47481;47482;47483;47484;47485;47486 30110;30111;30112 30110 3 RLSEATQHPAHTIHR Unmodified 1752.9132 0.91319768 1388 Karp_02136 yes yes 0 0 0 1 By MS/MS By matching By matching 1 1 1 17.594 17.827 4 0.026452 3200 20181213_JW_Orientia_Karp_1_1 44.44 8.095 2521500 1750700 0 0 346400 0 0 424400 0 7887 1388 6746 47487;47488;47489 30113 30113 1 RLSEDYGVLK Unmodified 1178.6295 0.62953741 321 A6NIW5;B4DF70;V9HW12;P32119 PRDX2;HEL-S-2a Peroxiredoxin-2 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 36.349 36.633 2 0.0016474 11177 20181213_JW_Orientia_Karp_1_2 139.38 64.193 64217000 8941000 16068000 24854000 0 3601800 3264800 7487700 0 7888 321 6747 47490;47491;47492;47493;47494;47495;47496 30114;30115;30116 30115 3 RLSEIMDNLPNLVADDVPYGTNSDMNK Oxidation (M) 3036.4169 0.41685038 1364 Karp_01859 yes yes 0 0 1 1 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 68.228 68.465 3 7.0399E-05 26840 20181213_JW_Orientia_Karp_3_2 100.71 67.988 43774000 0 6545500 12140000 4159800 7595800 2449900 6691600 4191500 7889 1364 6748 47497;47498;47499;47500;47501;47502;47503 30117;30118;30119;30120 30120 943 4 RLSYNTASNK Unmodified 1152.5887 0.58873523 261 A0A024RDH8;P49207 RPL34 60S ribosomal protein L34 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 18.558 18.788 2 0.040277 3419 20181213_JW_Orientia_Karp_1_2 95.483 26.285 7291600 2004800 1652100 2749100 340220 0 0 545320 0 7890 261 6749 47504;47505;47506;47507;47508 30121 30121 1 RLTEFENFTIAK Unmodified 1467.7722 0.7721789 1264 Karp_01053 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 49.652 49.902 3 4.2516E-05 18689 20181213_JW_Orientia_Karp_1_2 163.71 108.26 63633000 9388700 17075000 8601900 17525000 3441300 7601200 0 0 7891 1264 6750 47509;47510;47511;47512;47513;47514 30122;30123;30124 30123 3 RLTELETAVR Unmodified 1186.667 0.66698555 930 V9HW58;Q53H88;F5H2S7;Q13561;Q13561-3;Q13561-2;A8K8J9;F8W1I6;B3KTX4;F8VW18;F8VRV7;H0YI98 HEL-S-77;DCTN2 Dynactin subunit 2 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 35.138 35.539 2 0.0048686 10511 20181213_JW_Orientia_Karp_1_3 122.94 63.958 35942000 14386000 0 8331900 3059800 0 0 6633100 3531000 7892 930 6751 47515;47516;47517;47518;47519 30125;30126 30125 2 RLTVMSLQESGLK Unmodified 1460.8021 0.80209882 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 1 By MS/MS By MS/MS By matching 1 1 1 45.449 45.632 3 0.0017812 16412 20181213_JW_Orientia_Karp_1_1 115.12 64.632 55580000 20457000 20653000 14470000 0 0 0 0 0 7893 1520 6752 47520;47521;47522 30127;30128 30127 2 RLTVSSLQESGLK Unmodified 1416.7936 0.79364262 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5 FLNA;FLJ00119 Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 2 39.046 39.396 2;3 0.0025831 12594 20181213_JW_Orientia_Karp_1_2 151.7 93.266 99616000 0 19698000 59683000 0 1293600 901940 18039000 0 7894 1615 6753 47523;47524;47525;47526;47527;47528;47529 30129;30130;30131;30132 30129 3 RLVEVDSSR Unmodified 1059.5673 0.5672715 1044 J9JID7;Q03252 LMNB2 Lamin-B2 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 25.096 25.389 2 0.01251 5970 20181213_JW_Orientia_Karp_1_2 114.97 38.194 13883000 2782000 3193000 2784000 1729700 997720 564640 1832600 0 7895 1044 6754 47530;47531;47532;47533;47534;47535;47536 30133 30133 1 RLVLEVFPR Unmodified 1127.6815 0.6815134 1230 Karp_00897 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 50.605 50.95 2 0.0054811 19485 20181213_JW_Orientia_Karp_1_2 128.86 84.463 232360000 39480000 72050000 43799000 36733000 14131000 19146000 3657200 3364800 7896 1230 6755 47537;47538;47539;47540;47541;47542;47543;47544 30134;30135;30136;30137;30138 30135 5 RLVPGGGATEIELAK Unmodified 1509.8515 0.85149185 1695 Q53HU0;P50990;P50990-2;Q7Z759;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 43.375 43.675 3 2.9961E-05 14904 20181213_JW_Orientia_Karp_1_2 155.09 123.37 46669000 19251000 16698000 9075100 0 0 0 1644200 0 7897 1695 6756 47545;47546;47547;47548 30139;30140;30141 30140 3 RLVTTGVLK Unmodified 985.62842 0.6284152 1565 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 31.839 32.161 2 0.0011259 8360 20181213_JW_Orientia_Karp_2_3 168.25 28.572 1363900000 366230000 349680000 602260000 17835000 11683000 14573000 1643400 0 7898 1565 6757 47549;47550;47551;47552;47553;47554;47555;47556 30142;30143;30144;30145;30146;30147 30146 6 RMEELHNQEMQK 2 Oxidation (M) 1603.7083 0.70827479 1622 Q9BSV4;Q86VG2;P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 2 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 14.248 14.514 3 0.0022166 2200 20181213_JW_Orientia_Karp_1_3 103.46 67.141 14879000 3661000 4518300 2555600 1954700 0 1211300 977900 0 7899 1622 6758 47557;47558;47559;47560;47561;47562 30148;30149;30150;30151;30152 30149 1247;1248 5 RMEELHNQEMQK Oxidation (M) 1587.7134 0.71336017 1622 Q9BSV4;Q86VG2;P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 1 17.477 17.71 3 0.0016204 3080 20181213_JW_Orientia_Karp_1_3 108.72 64.29 4825200 1258200 1405100 1005200 421220 0 351670 383740 0 7900 1622 6758 47563;47564;47565;47566;47567;47568;47569 30153;30154;30155;30156;30157;30158;30159 30157 1247;1248 7 RMEELHNQEVQK Unmodified 1539.7464 0.74637486 367 A8K525;Q15233-2;Q15233;H7C367;C9JYS8 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 20.848 21.097 3 0.00067635 4374 20181213_JW_Orientia_Karp_1_1 128.54 81.556 10931000 3648300 2748200 2808300 467320 0 418100 841210 0 7901 367 6759 47570;47571;47572;47573;47574;47575 30160;30161;30162;30163;30164 30161 5 RMEELHNQEVQK Oxidation (M) 1555.7413 0.74128948 367 A8K525;Q15233-2;Q15233;H7C367;C9JYS8 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 17.307 17.536 3 0.017425 3087 20181213_JW_Orientia_Karp_3_1 68.171 39.268 10866000 2255600 4633300 2332400 564690 0 0 1079700 0 7902 367 6759 47576;47577;47578;47579;47580 30165 30165 262 1 RMGHAGAIIDGEK Oxidation (M) 1369.6772 0.67723266 1120 Karp_00318 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 18.372 18.78 3 0.00067687 2010 20181213_JW_Orientia_Karp_3_2 125.61 60.971 138160000 22139000 28135000 24814000 15931000 2259500 13558000 16684000 14637000 7903 1120 6760 47581;47582;47583;47584;47585;47586;47587;47588;47589 30166;30167;30168;30169;30170;30171;30172;30173;30174;30175;30176 30174 646 11 RMGHAGAIIDGEK Unmodified 1353.6823 0.68231804 1120 Karp_00318 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 23.205 23.587 3 0.0016897 4756 20181213_JW_Orientia_Karp_2_1 115.8 50.304 34940000 0 18087000 0 4848500 4588000 1789400 0 5627300 7904 1120 6760 47590;47591;47592;47593;47594;47595 30177;30178;30179;30180;30181 30179 5 RMPTTHQIHVEQSISLLLNFLLAAF 2 Deamidation (NQ) 2880.5208 0.52078559 1049 K7EJ84 DTNA yes yes 0 2 0 1 By MS/MS 1 70.754 70.754 3 0.0052582 32157 20181213_JW_Orientia_Karp_1_1 71.527 46.373 27895000 27895000 0 0 0 0 0 0 0 7905 1049 6761 47596 30182 30182 388;1785;1786 1 RMPTTHQIHVEQSISLLLNFLLAAF 3 Deamidation (NQ) 2881.5048 0.50480117 1049 K7EJ84 DTNA yes yes 0 3 0 1 By MS/MS 1 69.909 70.218 3 0.025454 27892 20181213_JW_Orientia_Karp_3_2 55.128 18.502 0 0 0 0 0 0 0 0 0 7906 1049 6761 47597 30183 30183 388;1785;1786 1 RMTGSEFDFEEMK 2 Oxidation (M) 1637.6702 0.67015795 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q8TB95;B3KVE3 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 2 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 36.757 37.088 3 0.011727 10950 20181213_JW_Orientia_Karp_3_1 76.357 48.926 22428000 8088000 4878600 3371300 0 1300700 677350 3796000 316030 7907 596 6762 47598;47599;47600;47601;47602;47603;47604 30184 30184 368;369 1 RNDFQLIGIQDGYLSLLQDSGEVR Deamidation (NQ) 2736.3719 0.37187274 1018 I3L397;I3L504;P63241;P63241-2 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 2 2 1 74.22 74.246 3 2.6278E-06 34227 20181213_JW_Orientia_Karp_1_2 131.04 88.425 156300000 38577000 48663000 36360000 1828300 15578000 10931000 0 4361300 7908 1018 6763 47605;47606;47607;47608;47609;47610;47611;47612;47613;47614 30185;30186;30187;30188;30189;30190 30187 373;1766 5 RNFILDQTNVSAAAQR Unmodified 1802.9387 0.93874373 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By matching 1 1 45.106 45.38 3 0.001107 15853 20181213_JW_Orientia_Karp_1_2 115.26 53.182 64520000 0 27229000 37291000 0 0 0 0 0 7909 595 6764 47615;47616 30191 30191 1 RNPDTQWITK Unmodified 1257.6466 0.64658446 73 A0A024R2Q4;P61313;E7EQV9;E7ENU7 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 32.43 32.787 2 0.028528 9696 20181213_JW_Orientia_Karp_1_1 92.239 42.703 32404000 8609500 7560800 9547300 1236900 1310800 880680 2364800 893750 7910 73 6765 47617;47618;47619;47620;47621;47622;47623;47624 30192;30193 30192 1 RNQDLAPNSAEQASILSLVTK Unmodified 2254.1917 0.19172353 660 X6R6Z1;B4DY09;Q53FG3;F4ZW62;Q12905;F4ZW63 ILF2 Interleukin enhancer-binding factor 2 yes no 0 0 0 1 By MS/MS By matching 1 1 58.961 59.236 3 0.0084477 24910 20181213_JW_Orientia_Karp_1_2 73.672 42.535 23816000 0 18353000 5463900 0 0 0 0 0 7911 660 6766 47625;47626 30194 30194 1 RNSMVLDVAFVLEGSDK Oxidation (M) 1894.9459 0.94586252 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 1 1 By MS/MS By matching By matching 1 1 1 60.513 60.696 3 0.018211 26174 20181213_JW_Orientia_Karp_1_1 62.203 34.352 11737000 4213200 3370400 4153800 0 0 0 0 0 7912 1466;1549 6767 47627;47628;47629 30195 30195 1086 1 RNTEVIGISVDSHFCHK Unmodified 1997.9741 0.97414296 1399 Karp_02188 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 37.89 38.206 4 0.0024507 11454 20181213_JW_Orientia_Karp_3_1 97.129 66.801 162000000 49982000 25411000 55523000 10493000 1686300 0 18901000 0 7913 1399 6768 47630;47631;47632;47633;47634;47635 30196;30197;30198;30199;30200 30200 5 RNVIFQPVAELK Unmodified 1412.814 0.81398414 1760 Q01813;Q01813-2;Q49A78;B1APP8;O14943;Q8WTZ9;H0Y757 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 1 By matching By matching By MS/MS 1 1 1 48.235 48.418 3 0.02278 17380 20181213_JW_Orientia_Karp_1_3 70.089 24.299 36348000 9757400 18059000 8531200 0 0 0 0 0 7914 1760 6769 47636;47637;47638 30201 30201 1 RNVQALEIELQSQLALK Unmodified 1952.1055 0.10547471 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 58.192 58.518 3 0.00066638 22234 20181213_JW_Orientia_Karp_2_1 115.58 57.263 29453000 0 4000200 0 6484200 6793200 12175000 0 0 + 7915 798 6770 47639;47640;47641;47642 30202 30202 1 RPAEDMEEEQAFK Oxidation (M) 1594.6933 0.69333623 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2;B4DFF1;S4R457 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 27.271 27.588 3 9.0083E-05 6885 20181213_JW_Orientia_Karp_1_3 159.58 104.38 22277000 3786400 7964600 5134400 509710 1834500 0 3047600 0 7916 63 6771 47643;47644;47645;47646;47647;47648 30203;30204;30205;30206 30206 68 4 RPASVSSSAAVEHEQR Unmodified 1709.8445 0.844509 1891 Q7Z5L9-2;Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 20.107 20.337 3 0.014236 3752 20181213_JW_Orientia_Karp_2_1 94.339 68.108 3375200 1338200 0 908080 530190 256260 342430 0 0 7917 1891 6772 47649;47650;47651;47652;47653 30207;30208;30209 30209 3 RPCFSALTPDETYVPK Unmodified 1879.9138 0.91383411 792 CON__P02769 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 2 2 2 2 49.325 49.659 3 5.0181E-08 16582 20181213_JW_Orientia_Karp_3_2 201.72 158.13 1958100000 241990000 234560000 237150000 467450000 319640000 374620000 0 82675000 + 7918 792 6773 47654;47655;47656;47657;47658;47659;47660;47661;47662;47663;47664 30210;30211;30212 30212 3 RPDGEGCVDENECQTK Unmodified 1892.7629 0.76288914 1654 P35555;Q59HB9;H0YND0 FBN1 Fibrillin-1 yes no 0 0 0 1 By MS/MS 1 22.277 22.525 3 0.030365 4405 20181213_JW_Orientia_Karp_2_1 67.326 36.42 271660 0 0 0 271660 0 0 0 0 7919 1654 6774 47665 30213 30213 0 RPDLLTMVVDYR Oxidation (M) 1492.7708 0.77079869 437 Q6FHL9;B1AKZ4;Q15121;Q15121-2;B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 1 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 53.129 53.367 3 0.0012917 19302 20181213_JW_Orientia_Karp_2_2 112.5 69.714 23574000 3235300 0 0 7659300 3064200 9615700 0 0 7920 437 6775 47666;47667;47668;47669 30214;30215;30216 30215 290 3 RPDLLTMVVDYR Unmodified 1476.7759 0.77588407 437 Q6FHL9;B1AKZ4;Q15121;Q15121-2;B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 60.707 61.009 3 0.0027654 23377 20181213_JW_Orientia_Karp_2_2 105.25 65.236 7525300 0 0 1890700 0 1985200 1452700 0 2196700 7921 437 6775 47670;47671;47672;47673 30217;30218 30217 2 RPDQQLQGEGK Unmodified 1254.6317 0.63166267 832 Q63HR1;Q5VU21;D3DQ69;Q8NC51-4;Q8NC51-3;D3DQ70;Q8NC51-2;Q8NC51 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 19.643 19.924 2 0.035252 3972 20181213_JW_Orientia_Karp_1_1 99.788 51.186 1908800 489620 0 0 387790 265890 483890 281570 0 7922 832 6776 47674;47675;47676;47677;47678 30219 30219 1 RPDVVENQPDAASQLNVDASGNLAK Unmodified 2607.2889 0.2888714 386 A8K7A4;Q9NZL9-3;Q9NZL9-4;Q9NZL9-2;Q9NZL9;H7C0X7 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 47.317 47.627 3 0.00067041 17248 20181213_JW_Orientia_Karp_1_2 92.716 64.303 42097000 10379000 11302000 7221300 5509200 2294400 0 0 5391200 7923 386 6777 47679;47680;47681;47682;47683;47684 30220;30221;30222;30223 30221 4 RPEEVCGPTQFR Unmodified 1474.6987 0.69869638 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 32.412 32.789 3 0.015558 8152 20181213_JW_Orientia_Karp_3_2 98.902 50.334 39267000 21124000 0 8972100 3626300 2152100 0 2842700 550080 7924 195 6778 47685;47686;47687;47688;47689;47690 30224 30224 1 RPGDVWTLPDQCHTVTCQPDGQTLLK Unmodified 3021.4437 0.44367425 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 53.713 54.039 4 0.035989 21819 20181213_JW_Orientia_Karp_1_1 32.965 12.99 158330000 79308000 22127000 42637000 6627200 6169700 0 0 1462500 7925 1466;1549 6779 47691;47692;47693;47694;47695;47696 30225 30225 1 RPGGAGGPPIQDEDEGEEGPTEPPPAEPR Unmodified 2937.3377 0.33767208 101 B4DLW4;K7EL81;A0A024R4S2;B4DME2;Q9BZL4-2;Q9BZL4-3;Q9BZL4-4;Q9BZL4 PPP1R12C Protein phosphatase 1 regulatory subunit 12C yes no 0 0 0 1 By matching By MS/MS 1 1 41.006 41.405 3 0.027879 13008 20181213_JW_Orientia_Karp_2_1 44.555 23.949 19733000 0 4880000 0 14853000 0 0 0 0 7926 101 6780 47697;47698 30226 30226 1 RPGGEPSPEGTTGQSYNQYSQR Unmodified 2395.0789 0.078878621 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-13;P02751-11;P02751-12;Q6N084;Q68CX6;Q59G22;H0Y7Z1;B4DU16;B4DTK1;Q6PJE5;B4DN21;B4DTH2;Q9H382;Q7L553;Q53S27 FN1;DKFZp686L11144;DKFZp686O13149 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 31.468 31.795 3 4.1774E-23 8684 20181213_JW_Orientia_Karp_1_3 200.2 157 304120000 59479000 99611000 110520000 13736000 9593300 0 0 11175000 7927 85 6781 47699;47700;47701;47702;47703;47704 30227;30228;30229;30230;30231;30232;30233;30234 30231 8 RPGGEPSPEGTTGQSYNQYSQR Deamidation (NQ) 2396.0629 0.062894206 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-13;P02751-11;P02751-12;Q6N084;Q68CX6;Q59G22;H0Y7Z1;B4DU16;B4DTK1;Q6PJE5;B4DN21;B4DTH2;Q9H382;Q7L553;Q53S27 FN1;DKFZp686L11144;DKFZp686O13149 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 0 1 By MS/MS By MS/MS 1 2 33.396 33.396 3 9.3268E-14 8281 20181213_JW_Orientia_Karp_2_3 198.6 159.48 15225000 15225000 0 0 0 0 0 0 0 7928 85 6781 47705;47706;47707 30235;30236;30237 30236 1285 3 RPHETGGYMLECVCLGNGK Oxidation (M);Deamidation (NQ) 2193.9605 0.96054309 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 1 1 By MS/MS 1 40.754 40.754 3 0.041 13772 20181213_JW_Orientia_Karp_1_1 44.391 24.14 0 0 0 0 0 0 0 0 0 7929 85 6782 47708 30238 30238 1 RPISADSAIMNPASK Oxidation (M) 1572.793 0.7929907 1757 Q00610-2;Q00610;J3KS13;J3QL20;J3KSQ2 CLTC Clathrin heavy chain 1 yes no 0 0 1 1 By MS/MS By matching By matching 1 1 1 32.397 32.914 3 0.0046744 9274 20181213_JW_Orientia_Karp_1_2 90.367 36.024 4629200 0 1966100 0 956380 0 0 1706700 0 7930 1757 6783 47709;47710;47711 30239 30239 1374 1 RPLEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYK Unmodified 3884.9347 0.93466799 52 C9J9W2;A8K1D2;A0A024R1S8;Q14847-3;Q14847;Q14847-2;J3KSN1 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 2 2 40.763 41.118 4;5 0.010973 13492 20181213_JW_Orientia_Karp_1_2 43.438 28.283 376690000 40273000 40710000 115610000 46028000 42545000 0 86245000 5282600 7931 52 6784 47712;47713;47714;47715;47716;47717;47718;47719;47720;47721;47722;47723;47724 30240;30241;30242;30243;30244;30245;30246 30242 6 RPLIDQVVQTALSETQDPEEVSVTVK Unmodified 2880.508 0.50803187 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 70.36 70.51 3 1.0706E-05 31983 20181213_JW_Orientia_Karp_1_2 116.08 44.548 26586000 0 5955200 0 0 3656300 3522600 13452000 0 7932 1757 6785 47725;47726;47727;47728 30247;30248;30249 30247 3 RPLILQLVHVSQEDK Unmodified 1774.0101 0.010117761 552 H0YHY4;F8VR28;F8VYL3;B4DPZ9;F8W1W3;B4DDQ3;F8VZ52;Q32Q67;G8JLD5;D3DUW7;D3DUW6;B4DYR6;D3DUW5;O00429-4;O00429-5;O00429-3;O00429-2;O00429;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 49.245 49.507 3 0.0003763 18483 20181213_JW_Orientia_Karp_1_2 135.14 98.5 30516000 6381400 13014000 5255500 0 3207000 0 0 2657400 7933 552 6786 47729;47730;47731;47732;47733 30250 30250 1 RPPEPTTPWQEDPEPEDENLYEK Unmodified 2795.2562 0.25623386 1890 Q7Z4X2;Q9NX14;Q9NX14-2 NDUFB11 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 51.129 51.379 3 0.0030008 20028 20181213_JW_Orientia_Karp_1_1 144.3 106.76 179340000 47935000 42261000 56809000 10670000 12980000 8681400 0 0 7934 1890 6787 47734;47735;47736;47737;47738;47739 30251;30252;30253;30254;30255;30256;30257;30258;30259;30260;30261 30254 11 RPPGVLHCTTK Unmodified 1264.671 0.67102507 53 B4DFN6;B4DI06;A0A024R1T5;P09543-2;P09543 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 1 By MS/MS 1 19.171 19.369 3 0.041688 3434 20181213_JW_Orientia_Karp_1_3 58.674 17.275 880660 0 0 880660 0 0 0 0 0 7935 53 6788 47740 30262 30262 0 RPPLCYHNGVQYR Deamidation (NQ) 1659.794 0.79399375 186 A0A024R9Q1;P07996;P07996-2;A0PJG0;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 32.137 32.524 3 3.7148E-05 8485 20181213_JW_Orientia_Karp_1_2 168.85 121.78 359540000 126120000 56359000 88819000 15860000 8523300 0 42389000 21471000 + 7936 186 6789 47741;47742;47743;47744;47745;47746;47747;47748;47749;47750;47751;47752;47753;47754 30263;30264;30265;30266;30267;30268;30269;30270;30271;30272;30273;30274;30275 30265 73 13 RPQYSNPPVQGEVMEGADNQGAGEQGR Unmodified 2870.3002 0.30018114 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 39.694 39.936 3 2.734E-25 12770 20181213_JW_Orientia_Karp_1_2 186.05 149.48 72925000 10395000 33292000 10401000 0 16506000 0 0 2330800 7937 1745 6790 47755;47756;47757;47758;47759;47760 30276;30277;30278;30279;30280 30277 5 RPQYSNPPVQGEVMEGADNQGAGEQGR Oxidation (M) 2886.2951 0.29509576 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 0 1 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 35.361 35.696 3 9.1265E-26 9943 20181213_JW_Orientia_Karp_2_1 190.87 160.56 87824000 11718000 7891800 0 21190000 20947000 11857000 0 14221000 7938 1745 6790 47761;47762;47763;47764;47765;47766 30281;30282;30283;30284;30285;30286 30282 1369 6 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR Oxidation (M) 3238.5174 0.51738456 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 0 1 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 2 1 1 1 34.424 34.789 4 5.0196E-08 9873 20181213_JW_Orientia_Karp_3_1 118.04 96.535 610850000 66861000 58981000 234990000 5285900 92514000 1289100 147570000 3359000 7939 1745 6791 47767;47768;47769;47770;47771;47772;47773;47774;47775;47776;47777 30287;30288;30289;30290;30291;30292 30292 1369 6 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR Unmodified 3222.5225 0.52246994 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 38.068 38.452 3;4 2.8597E-10 12468 20181213_JW_Orientia_Karp_1_1 128.09 110.39 675670000 102760000 86181000 183680000 151440000 18480000 0 133140000 0 7940 1745 6791 47778;47779;47780;47781;47782;47783;47784;47785;47786 30293;30294;30295;30296;30297;30298;30299;30300 30293 6 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR Deamidation (NQ) 3223.5065 0.50648552 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 1 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 2 2 1 1 1 39.046 39.403 4 3.6202E-05 13127 20181213_JW_Orientia_Karp_1_1 84.127 58.971 99304000 37472000 21264000 0 29467000 1745300 5138800 4216500 0 7941 1745 6791 47787;47788;47789;47790;47791;47792;47793;47794 30301;30302;30303;30304;30305 30302 1147;1961;1962 5 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR Oxidation (M);Deamidation (NQ) 3239.5014 0.50140014 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;H0Y449;A0JLU4;Q2VIK8 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 1 1 2 By MS/MS By matching By matching 1 1 1 35.814 36.199 4 0.0022439 9887 20181213_JW_Orientia_Karp_2_2 61.807 37.89 29778000 0 0 0 0 10513000 1157200 18108000 0 7942 1745 6791 47795;47796;47797 30306 30306 1147;1961;1962 1369 1 RPSTSQTVSTPAPVPVIESTEAIEAK Unmodified 2694.4076 0.40758955 1589 P12270;Q58F23;Q504U6;Q15624;A0PJC9 TPR Nucleoprotein TPR yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.959 54.275 3 0.00064505 21336 20181213_JW_Orientia_Karp_1_3 84.646 47.842 84861000 23143000 12851000 14744000 11854000 9858300 9839300 0 2570500 7943 1589 6792 47798;47799;47800;47801;47802;47803;47804 30307;30308;30309;30310;30311;30312 30309 6 RPTATGDYDK Unmodified 1122.5306 0.53055165 842 Q53HW4;D3DX19;O00501 CLDN5 Claudin;Claudin-5 yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 16.872 17.104 2 0.0035848 2959 20181213_JW_Orientia_Karp_1_2 128.6 32.787 2197700 0 1151000 887250 159410 0 0 0 0 7944 842 6793 47805;47806;47807 30313;30314 30313 2 RPTELLSNPQFIVDGATR Unmodified 2013.0643 0.064338176 110 A0A024R5A3;A0A024R580;B2RDI5;P07384;E9PLX0;E9PJJ3;E9PLC9;E9PMC6;E9PJA6;E9PSA6;E9PQB3;E9PRM1 CAPN1 Calpain-1 catalytic subunit yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 55.37 55.64 3 0.013221 22168 20181213_JW_Orientia_Karp_1_3 87.16 58.994 56289000 21041000 13032000 14303000 2397600 5515500 0 0 0 7945 110 6794 47808;47809;47810;47811;47812 30315 30315 1 RQAEVELASR Unmodified 1157.6153 0.61528433 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 24.825 25.14 2 0.023949 5817 20181213_JW_Orientia_Karp_1_3 102.06 41.274 4711200 969330 1472000 2036500 0 0 0 0 233330 7946 1803 6795 47813;47814;47815;47816 30316;30317 30317 2 RQAIPNPK Unmodified 922.53485 0.53484916 1074 Karp_00050 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 19.594 19.827 2 0.035874 3638 20181213_JW_Orientia_Karp_3_1 110.63 12.998 376700000 70510000 103120000 85686000 44851000 0 35992000 36543000 0 7947 1074 6796 47817;47818;47819;47820;47821;47822 30318 30318 1 RQAVNNIIQYHR Unmodified 1510.8117 0.81169273 1390 Karp_02139 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 29.456 29.772 3 0.00044917 7745 20181213_JW_Orientia_Karp_1_3 133.91 47.939 187200000 44227000 53416000 54991000 13435000 8311100 6271200 0 6548500 7948 1390 6797 47823;47824;47825;47826;47827;47828;47829 30319;30320;30321;30322;30323 30321 5 RQAVNNIIQYHR Deamidation (NQ) 1511.7957 0.79570831 1390 Karp_02139 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 31.397 31.597 3 0.00069579 7928 20181213_JW_Orientia_Karp_2_1 150.04 50.311 69937000 20428000 33637000 13902000 0 0 1970100 0 0 7949 1390 6797 47830;47831;47832;47833;47834 30324;30325;30326;30327;30328 30327 879;880;1864 5 RQAVTNPNNTFYATK Unmodified 1723.8642 0.86418181 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;D6RA73;D6RJI2 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 32.177 32.378 3 0.0021894 9499 20181213_JW_Orientia_Karp_1_1 171.36 106.52 40913000 12937000 26944000 0 0 1031600 0 0 0 7950 721 6798 47835;47836;47837;47838 30329;30330;30331 30329 3 RQEAIELK Unmodified 985.55564 0.55564418 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.173 25.518 2 0.018895 5569 20181213_JW_Orientia_Karp_2_3 148.99 5.1 1049100000 143640000 245440000 147540000 107810000 89650000 46308000 171000000 97756000 7951 1074 6799 47839;47840;47841;47842;47843;47844;47845;47846 30332;30333;30334;30335;30336;30337 30335 6 RQEALPLHQETK Unmodified 1448.7736 0.77357588 128 A0A024R663;Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 KTN1 Kinectin yes no 0 0 0 1 By MS/MS By matching 1 1 23.73 24.21 3 0.040157 5462 20181213_JW_Orientia_Karp_1_2 71.888 41.552 3372800 0 2274800 0 0 0 0 0 1098000 7952 128 6800 47847;47848 30338 30338 1 RQELEAELAK Unmodified 1185.6354 0.63535107 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 30.591 31.006 2 0.018365 8373 20181213_JW_Orientia_Karp_1_3 105.2 36.825 22937000 6977200 0 14626000 0 0 0 961170 372550 7953 1803 6801 47849;47850;47851;47852 30339 30339 1 RQFASQANVVGPWIQTK Unmodified 1929.0221 0.022079431 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.451 49.7 3 0.027862 18487 20181213_JW_Orientia_Karp_1_2 67.994 29.901 98287000 29094000 31907000 20605000 7590800 2370800 6719100 0 0 7954 1509 6802 47853;47854;47855;47856;47857;47858 30340 30340 0 RQFHLTDDDLLR Unmodified 1527.7794 0.77938954 1768 Q04446;Q59ET0;B4DNJ3;E9PGM4;B4DUF1 GBE1 1,4-alpha-glucan-branching enzyme yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 42.993 43.176 3 0.0079783 14655 20181213_JW_Orientia_Karp_1_2 87.719 55.104 40356000 14347000 18057000 7952300 0 0 0 0 0 7955 1768 6803 47859;47860;47861 30341 30341 1 RQFVQSAK Unmodified 962.52976 0.52976379 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By matching By MS/MS By matching By MS/MS 1 1 1 1 16.009 16.321 2 0.026222 2699 20181213_JW_Orientia_Karp_3_1 117.4 69.483 7330900 0 1714100 4702000 484350 0 0 430450 0 7956 2016 6804 47862;47863;47864;47865 30342;30343 30343 2 RQHSSQDVHVVLK Unmodified 1531.8219 0.82192306 1826 Q53FF5;Q53FE8;Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 20.904 21.204 3;4 0.0035924 4463 20181213_JW_Orientia_Karp_1_1 96.745 67.841 13488000 2458400 2780900 0 2024600 2144000 2107800 1972600 0 7957 1826 6805 47866;47867;47868;47869;47870;47871;47872;47873;47874 30344;30345;30346;30347;30348;30349 30344 5 RQNFVAQFIQLLK 4 Deamidation (NQ) 1607.8559 0.85590853 1876 Q6ZNR7 yes yes 0 4 0 1 By MS/MS 1 70.008 70.157 2 0.0099264 28435 20181213_JW_Orientia_Karp_2_1 81.594 9.2692 0 0 0 0 0 0 0 0 0 7958 1876 6806 47875 30350 30350 1185;2016;2017;2018 1 RQNGDDPLLTYR Deamidation (NQ) 1447.7056 0.7055559 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;P02545-2;W8QEH3;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 1 0 1 By matching By matching By matching By MS/MS 1 1 1 1 43.143 43.443 3 0.013142 14093 20181213_JW_Orientia_Karp_3_1 92.247 54.821 49738000 11785000 27395000 6471700 0 0 0 4087000 0 7959 1543;1544;1851 6807 47876;47877;47878;47879 30351 30351 1029;1917 1 RQQNTQEMPWNVRMQSPK Oxidation (M);3 Deamidation (NQ) 2276.0314 0.031399843 472 F2Z3F7;B2R8H0;Q8N6F7-3;Q8N6F7;Q8N6F7-2 GCSAM Germinal center-associated signaling and motility protein yes no 0 3 1 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 81.105 81.005 2 0.042635 33175 20181213_JW_Orientia_Karp_2_3 49.081 6.6557 131080000 36316000 17120000 0 0 27276000 20737000 29636000 0 7960 472 6808 47880;47881;47882;47883;47884 30352 30352 1463;1464 0 RQQPGPSEHIER Unmodified 1432.7171 0.71712364 37 A0A024R0V4;P50552;K7EQD0 VASP Vasodilator-stimulated phosphoprotein yes no 0 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 16.634 17.052 3 0.0079828 2033 20181213_JW_Orientia_Karp_2_2 110.15 66.649 9551300 4062000 2809100 0 758390 186680 0 593490 1141700 7961 37 6809 47885;47886;47887;47888;47889;47890 30353;30354;30355 30354 3 RQQQLTAMK Unmodified 1102.5917 0.59171211 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 no no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 19.924 20.154 2 0.0035768 3777 20181213_JW_Orientia_Karp_1_3 145.16 96.059 10373000 3884700 2847600 2941700 0 0 102970 595880 0 7962 47 6810 47891;47892;47893;47894;47895 30356;30357 30357 2 RQQQQQQDQQNTQR 5 Deamidation (NQ) 1817.7776 0.77761122 1920 Q8TE12-2;Q8TE12 LMX1A LIM homeobox transcription factor 1-alpha yes no 0 5 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 47.21 47.554 2 0.03519 16101 20181213_JW_Orientia_Karp_2_1 43.084 19.408 89857000 8552900 0 4912600 13928000 28856000 19848000 2560100 11200000 7963 1920 6811 47896;47897;47898;47899;47900;47901;47902 30358 30358 2056;2057;2058;2059;2060 1 RQSQINIAEAGK Unmodified 1313.7052 0.70516197 1104 Karp_00281 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 1 2 2 1 26.68 27.013 2;3 0.0090855 6105 20181213_JW_Orientia_Karp_2_1 86.262 14.994 320160000 34327000 147870000 47659000 20229000 10876000 12319000 19771000 27117000 7964 1104 6812 47903;47904;47905;47906;47907;47908;47909;47910;47911;47912;47913;47914;47915;47916 30359;30360;30361;30362 30361 4 RQVDQLTNDK Unmodified 1215.6208 0.62076364 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 1 1 20.914 21.223 2;3 8.4682E-17 4161 20181213_JW_Orientia_Karp_1_3 228.64 144.14 42793000 7771200 15084000 8678600 4436500 1119600 2330900 2542400 829830 7965 1571 6813 47917;47918;47919;47920;47921;47922;47923;47924;47925;47926;47927;47928 30363;30364;30365;30366;30367;30368;30369;30370;30371 30366 8 RQVDQLTNDK Deamidation (NQ) 1216.6048 0.60477922 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 23.036 23.395 2 2.9078E-07 5121 20181213_JW_Orientia_Karp_1_2 197.79 104.65 13855000 1265300 4779100 6149200 0 0 0 0 1661700 7966 1571 6813 47929;47930;47931;47932;47933;47934;47935 30372;30373;30374 30373 1054 3 RQVQSLMVHQR Oxidation (M) 1396.7358 0.73575059 51 K7EMQ8;J3QKS7;B4DGM3;A0A024R1S7;Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4;Q969G3;H7C048 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 1 1 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 19.346 19.625 3 0.021852 3644 20181213_JW_Orientia_Karp_3_1 63.091 36.979 5229900 0 1779900 1544800 423730 0 632850 848520 0 7967 51 6814 47936;47937;47938;47939;47940 30375;30376 30376 58 2 RQVQSLTCEVDALK Unmodified 1645.8458 0.84575455 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 41.711 42.011 3 7.7359E-13 13916 20181213_JW_Orientia_Karp_1_2 209.11 127.4 159360000 56556000 62888000 19690000 0 0 0 20225000 0 7968 1571 6815 47941;47942;47943;47944 30377;30378;30379;30380 30378 4 RQYEASIK Unmodified 993.52434 0.52434406 1252 Karp_00931 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 19.895 20.128 2 0.02786 3793 20181213_JW_Orientia_Karp_1_3 116.25 28.928 12177000 3203000 3037000 3064600 1394300 604500 873910 0 0 7969 1252 6816 47945;47946;47947;47948;47949;47950 30381;30382 30381 2 RQYHAQCFTCR Unmodified 1525.6667 0.66668475 1921 Q8WUP2-3;Q8WUP2;E7EWE8;Q8WUP2-2 FBLIM1 Filamin-binding LIM protein 1 yes no 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 19.785 20.167 3 0.029687 2273 20181213_JW_Orientia_Karp_3_2 64.55 41.459 4636200 722830 369730 559000 612540 444010 595980 1070800 261330 7970 1921 6817 47951;47952;47953;47954;47955;47956;47957;47958 30383;30384 30384 2 RSAAEMYGSSFDLDYDFQR Unmodified 2256.9746 0.97459647 452 B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251;G3V2D6 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 58.387 58.674 3 0.0034376 24569 20181213_JW_Orientia_Karp_1_2 93.804 69.887 68180000 22892000 11439000 19180000 4721400 3386800 4815200 0 1746400 7971 452 6818 47959;47960;47961;47962;47963;47964;47965 30385;30386;30387;30388;30389 30386 5 RSAAEMYGSSFDLDYDFQR Oxidation (M) 2272.9695 0.96951109 452 B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251;G3V2D6 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 54.906 55.263 3 0.0036998 20365 20181213_JW_Orientia_Karp_2_2 87.356 63.503 109690000 24395000 13707000 19142000 10271000 27174000 13396000 675290 925920 7972 452 6818 47966;47967;47968;47969;47970;47971;47972;47973 30390;30391;30392;30393 30392 300 4 RSAEEEAADLPTKPTK Unmodified 1741.8846 0.88464248 1922 Q8WW12-2;Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein yes no 0 0 0 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 29.166 29.506 3 0.0079464 7249 20181213_JW_Orientia_Karp_2_3 116.96 64.456 10960000 2549600 0 0 3566700 1022500 1497000 2324400 0 7973 1922 6819 47974;47975;47976;47977;47978 30394 30394 1 RSEPIYNSR Unmodified 1120.5625 0.56252048 1849 Q5T749 KPRP Keratinocyte proline-rich protein yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 19.988 20.221 2 0.022564 3023 20181213_JW_Orientia_Karp_2_2 117.31 30.641 6908000 2549700 1104800 1299800 760870 566510 626310 0 0 7974 1849 6820 47979;47980;47981;47982;47983;47984 30395 30395 1 RSISLPSNIDENNIDAK Deamidation (NQ) 1885.9381 0.93813461 1077 Karp_00059 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 2 3 1 2 2 46.14 46.488 2;3 7.7506E-17 16193 20181213_JW_Orientia_Karp_1_3 203.06 158.62 675560000 203830000 142840000 142060000 76456000 57649000 4010000 8862600 39848000 7975 1077 6821 47985;47986;47987;47988;47989;47990;47991;47992;47993;47994;47995;47996;47997;47998;47999 30396;30397;30398;30399;30400;30401;30402 30398 425;426 7 RSISLPSNIDENNIDAK Unmodified 1884.9541 0.95411902 1077 Karp_00059 yes yes 0 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.996 45.26 2;3 2.4058E-22 14230 20181213_JW_Orientia_Karp_3_2 213 132.26 371320000 116620000 162640000 77081000 0 0 0 0 14975000 7976 1077 6821 48000;48001;48002;48003;48004;48005;48006 30403;30404;30405;30406;30407 30407 5 RSLAVQVLLK Unmodified 1125.7234 0.72337821 1375 Karp_02111 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 44.344 44.689 2;3 2.6986E-05 14573 20181213_JW_Orientia_Karp_3_1 157.99 71.127 1417000000 341200000 410320000 171820000 83334000 0 165970000 199020000 45381000 7977 1375 6822 48007;48008;48009;48010;48011;48012;48013;48014;48015 30408;30409;30410;30411;30412;30413;30414;30415;30416;30417 30416 9 RSNTNQHLLHESALK Unmodified 1746.9125 0.91252898 1263 Karp_01030 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 21.337 21.674 3;4 0.012277 4226 20181213_JW_Orientia_Karp_3_1 71.316 33.765 24979000 1279600 6934500 3168600 4530800 1869400 3408300 2584300 1203800 7978 1263 6823 48016;48017;48018;48019;48020;48021;48022;48023;48024;48025;48026;48027;48028;48029 30418;30419;30420;30421;30422;30423 30422 6 RSPEAPQPVIAMEEPAVPAPLPK Oxidation (M) 2439.2832 0.28318108 627 B4DQ92;E7EVW7;P14317 HCLS1 Hematopoietic lineage cell-specific protein yes no 0 0 1 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 53.673 53.983 3 4.9903E-06 19671 20181213_JW_Orientia_Karp_2_2 127.35 96.918 46257000 6192600 0 8097100 13008000 10489000 8033000 0 436950 7979 627 6824 48030;48031;48032;48033;48034;48035 30424;30425 30425 385 2 RSPEAPQPVIAMEEPAVPAPLPK Unmodified 2423.2883 0.28826646 627 B4DQ92;E7EVW7;P14317 HCLS1 Hematopoietic lineage cell-specific protein yes no 0 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 59.024 59.301 3 0.004325 22540 20181213_JW_Orientia_Karp_2_2 78.419 56.85 24949000 8909600 0 4123200 2631600 4171900 3592400 0 1519800 7980 627 6824 48036;48037;48038;48039;48040;48041 30426;30427 30426 2 RSQIYGSR Unmodified 965.50428 0.50427732 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;P12956-2;F5H1I8 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 16.363 16.512 2 0.019473 2581 20181213_JW_Orientia_Karp_1_3 133.58 44.286 9264700 6751500 0 2393400 119840 0 0 0 0 7981 48 6825 48042;48043;48044 30428 30428 1 RSQVEQQQLITVEK 2 Deamidation (NQ) 1686.8788 0.87882882 183 A0A024R9G7;Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 yes no 0 2 0 1 By MS/MS 1 51.591 51.79 3 0.037661 19699 20181213_JW_Orientia_Karp_1_3 65.234 14.023 0 0 0 0 0 0 0 0 0 7982 183 6826 48045 30429 30429 1314;1315;1316;1317 1 RSSPVYVGR Unmodified 1019.5512 0.55122751 582 B4DIT7;V9HWG3;P21980;B4DTN7;P21980-2;A2A299;P21980-3 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 23.27 23.569 2 0.034207 5167 20181213_JW_Orientia_Karp_1_2 99.013 33.341 16951000 0 7756400 4458600 1667700 0 889160 2179200 0 7983 582 6827 48046;48047;48048;48049;48050 30430 30430 1 RSTITSREIQTAVR Unmodified 1616.8958 0.89581629 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;Q99880;P23527;P33778;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 2 By MS/MS By matching By matching 1 1 1 27.417 27.6 3 0.024795 7346 20181213_JW_Orientia_Karp_1_1 103.97 52.962 41923000 16887000 24276000 759430 0 0 0 0 0 7984 449;1624;1817 6828 48051;48052;48053 30431 30431 1 RSTVAQLVK Unmodified 1000.6029 0.60292873 1380;1628 Karp_02117;V9HW26;P25705-2;P25705;P25705-3;K7ENJ4 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial no no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 25.412 25.758 2 0.01524 6595 20181213_JW_Orientia_Karp_1_1 112.11 42.509 56357000 18520000 18267000 803950 3669100 3934400 2609600 4535100 4017700 7985 1380;1628 6829 48054;48055;48056;48057;48058;48059;48060;48061 30432;30433 30432 2 RSTYDQLGHQAFK Unmodified 1549.7637 0.76373948 1073 Karp_00049 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 30.038 30.372 3 1.161E-11 7399 20181213_JW_Orientia_Karp_2_1 201.09 125.99 509850000 206810000 0 189830000 53702000 34354000 24447000 699350 0 7986 1073 6830 48062;48063;48064;48065;48066;48067;48068;48069 30434;30435;30436;30437;30438;30439;30440 30437 7 RSVGELPSTVESLQK Unmodified 1628.8733 0.87334951 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 42.584 42.847 3 9.1436E-06 14239 20181213_JW_Orientia_Karp_1_3 174.24 100.52 141560000 118870000 0 0 0 2912700 863870 18914000 0 7987 224 6831 48070;48071;48072;48073;48074;48075 30441;30442;30443;30444;30445 30443 5 RTAAENDFVTLK Unmodified 1363.7096 0.70957864 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 37.899 38.209 2;3 0.0001793 12484 20181213_JW_Orientia_Karp_1_1 153.81 93.117 283140000 95904000 55526000 89423000 11786000 5109900 0 25390000 0 + 7988 804;1657 6832 48076;48077;48078;48079;48080;48081;48082;48083;48084;48085 30446;30447;30448;30449;30450 30447 5 RTAAENDFVTLK Deamidation (NQ) 1364.6936 0.69359423 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 1 0 1 By MS/MS By matching 1 1 39.592 39.767 3 0.0059361 13308 20181213_JW_Orientia_Karp_1_1 97.957 46.521 39840000 24636000 15204000 0 0 0 0 0 0 + 7989 804;1657 6832 48086;48087 30451 30451 296 1 RTAAENDFVTLKK Unmodified 1491.8045 0.80454166 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 30.233 30.616 3 0.00028097 7507 20181213_JW_Orientia_Karp_2_1 166.86 120.97 38753000 6076700 3309200 5742400 2106000 3535400 810400 4794200 12378000 + 7990 804;1657 6833 48088;48089;48090;48091;48092;48093;48094;48095 30452;30453;30454;30455;30456;30457 30455 6 RTDEFTSATDLFTK Unmodified 1630.7839 0.7838658 1365 Karp_01875 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 52.19 52.468 2;3 9.8586E-05 20850 20181213_JW_Orientia_Karp_1_1 181.76 134.72 353830000 125780000 67380000 43506000 45642000 26457000 43190000 0 1869000 7991 1365 6834 48096;48097;48098;48099;48100;48101;48102;48103;48104;48105;48106;48107;48108;48109 30458;30459;30460;30461;30462;30463;30464;30465 30458 8 RTFLETSTDTAVTNEWEK Unmodified 2127.012 0.012027834 399 B7Z8M8;B2RB02;B3KY28;A8K968;Q9Y2J2-3;Q9Y2J2-2;Q9Y2J2-4;Q9Y2J2;B3KT50;B7Z2G3;B7Z338 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 50.584 50.784 3 0.026431 19157 20181213_JW_Orientia_Karp_1_3 76.713 42.917 35067000 15830000 7453200 6775500 0 0 5008400 0 0 7992 399 6835 48110;48111;48112;48113 30466 30466 1 RTGAIVDVPVGEELLGR Unmodified 1779.9843 0.98429694 1628 V9HW26;P25705-2;P25705;K7EK77;B4DGW3;K7ERX7;K7EJP1;K7EQH4 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 58.634 58.895 3 0.028998 25039 20181213_JW_Orientia_Karp_1_1 107.73 70.184 165890000 62538000 72025000 0 3055400 12195000 16079000 0 0 7993 1628 6836 48114;48115;48116;48117;48118 30467 30467 1 RTGQPMIHIYLDK Oxidation (M) 1586.8239 0.8238969 430 B0QYK0;Q01844-6;Q01844-3;Q01844;Q01844-5;H7BY36;C9JGE3;V5JZ30;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 1 1 By matching By matching By MS/MS By matching 1 1 1 1 36.889 37.192 3 0.036287 11026 20181213_JW_Orientia_Karp_2_3 46.206 16.517 23394000 6105400 12490000 0 0 0 3161400 0 1637600 7994 430 6837 48119;48120;48121;48122 30468 30468 1 RTIAQDYGVLK Unmodified 1262.6983 0.69828568 1773 Q06830;B2R4P2 PRDX1 Peroxiredoxin-1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 1 38.122 38.436 2;3 0.00062232 10979 20181213_JW_Orientia_Karp_2_2 124.6 67.45 271380000 77822000 49186000 91549000 24191000 5566000 0 22982000 86904 7995 1773 6838 48123;48124;48125;48126;48127;48128;48129;48130;48131;48132;48133;48134 30469;30470;30471;30472;30473 30473 5 RTLEGELHDLR Unmodified 1337.7052 0.70516197 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.668 34.041 3 0.00040295 9784 20181213_JW_Orientia_Karp_1_3 148.13 78.457 1132500000 128980000 175280000 707730000 50423000 21015000 0 21202000 27826000 7996 1543;1544;1851 6839 48135;48136;48137;48138;48139;48140;48141 30474;30475;30476;30477;30478;30479;30480 30476 7 RTLISLIQK Unmodified 1070.6812 0.68117905 1364 Karp_01859 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.663 43.965 2 0.012615 14926 20181213_JW_Orientia_Karp_1_3 114.86 32.58 301520000 93191000 94655000 57892000 0 17048000 18695000 12746000 7293300 7997 1364 6840 48142;48143;48144;48145;48146;48147;48148 30481;30482;30483 30481 3 RTNAENEFVTIK Unmodified 1420.731 0.73104237 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 35.643 35.986 2 0.0032296 11358 20181213_JW_Orientia_Karp_1_1 142.97 45.333 833430000 154880000 222840000 334560000 0 0 44135000 66590000 10414000 + 7998 995;996 6841 48149;48150;48151;48152;48153;48154;48155 30484;30485;30486;30487;30488;30489;30490 30484 7 RTNAENEFVTIK Deamidation (NQ) 1421.7151 0.71505795 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 3 2 5 2 3 3 3 2 39.063 39.361 2;3 0.004614 14378 20181213_JW_Orientia_Karp_1_1 101.53 34.379 347950000 119230000 20002000 112750000 34967000 17383000 23356000 19384000 882030 + 7999 995;996 6841 48156;48157;48158;48159;48160;48161;48162;48163;48164;48165;48166;48167;48168;48169;48170;48171;48172;48173;48174;48175;48176;48177;48178 30491;30492;30493;30494;30495;30496;30497 30492 356;357 5 RTNAENEFVTIKK Unmodified 1548.826 0.82600539 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 28.268 28.638 3 5.5532E-11 7371 20181213_JW_Orientia_Karp_1_2 211.77 160.05 117690000 39544000 10970000 26041000 9233800 11376000 8092900 593390 11834000 + 8000 995;996 6842 48179;48180;48181;48182;48183;48184;48185;48186 30498;30499;30500;30501;30502 30499 5 RTPITVVK Unmodified 912.57565 0.57565135 716 B7Z2X4;B7Z992;P06396-2;B7Z9A0;B7Z6N2;P06396-4;P06396-3;P06396;Q5T0H7;Q5T0H8;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 26.042 26.394 2 0.03191 5895 20181213_JW_Orientia_Karp_2_1 113.41 55.6 79066000 0 39429000 25241000 4935600 2555100 2722700 0 4182400 8001 716 6843 48187;48188;48189;48190;48191;48192 30503;30504;30505;30506 30504 4 RTPMCAHCNQVIR Oxidation (M) 1657.7599 0.75993321 257;732 A0A024RDE8;Q96HC4;F5H7Y0;Q96HC4-7;Q96HC4-4;Q96HC4-6;H0Y8Y3;B7Z8X5;Q59FC9 PDLIM5 PDZ and LIM domain protein 5 no no 0 0 1 1 By matching By matching By MS/MS By MS/MS 1 1 1 1 19.339 19.69 3 0.02017 3519 20181213_JW_Orientia_Karp_2_3 64.121 31.497 2543400 0 0 0 623810 68118 575010 1276500 0 8002 257;732 6844 48193;48194;48195;48196 30507;30508 30507 185 2 RTSSQSIGQVMPNSR Oxidation (M);Deamidation (NQ) 1663.7948 0.79478161 572 B4DRK6;B4DGS2;B4DX41;B7Z2C5;E7ET86;Q8IVW4 CDKL3 Cyclin-dependent kinase-like 3 yes no 0 1 1 1 By MS/MS 1 35.803 35.803 3 0.013315 11200 20181213_JW_Orientia_Karp_1_1 76.759 16.396 0 0 0 0 0 0 0 0 0 8003 572 6845 48197 30509 30509 202;1525 353 1 RTSTNIVLINK Unmodified 1257.7405 0.74048484 1061 Karp_00005 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 1 2 1 34.822 35.17 2;3 0.0065721 9910 20181213_JW_Orientia_Karp_2_3 122.94 65.341 451540000 94127000 88613000 156450000 23467000 38699000 8870400 29238000 12070000 8004 1061 6846 48198;48199;48200;48201;48202;48203;48204;48205;48206;48207;48208;48209;48210;48211 30510;30511;30512;30513;30514;30515 30514 6 RTTAENEFVMLK Oxidation (M) 1453.7235 0.72351415 799;679 B4E1T1;B4DL32;H0YIN9;CON__P13647;P13647;F8W0C6 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 1 1 By MS/MS By matching By matching By MS/MS 1 1 1 1 37.681 37.969 3 0.0095293 12224 20181213_JW_Orientia_Karp_1_1 80.17 15.372 21098000 10732000 680660 0 2136500 7549100 0 0 0 + 8005 679;799 6847 48212;48213;48214;48215 30516;30517 30516 418 2 RTTDYVIASVIGK Unmodified 1421.7878 0.78782897 1100 Karp_00268 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 49.064 49.41 2 0.010781 18266 20181213_JW_Orientia_Karp_1_2 122.52 84.964 984000000 191830000 354340000 205140000 100820000 49038000 77369000 4189100 1273400 8006 1100 6848 48216;48217;48218;48219;48220;48221;48222;48223 30518;30519;30520;30521;30522;30523;30524 30519 7 RTVDLSSHLAK Unmodified 1225.6779 0.67788459 1554 Q6IBR0;Q53EP4;P04843;F8WF32;B4DL99 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 26.831 27.133 3 0.00022734 6629 20181213_JW_Orientia_Karp_1_2 158.06 106.11 33553000 7561400 16320000 7031400 0 0 865900 0 1774800 8007 1554 6849 48224;48225;48226;48227;48228 30525;30526;30527;30528 30526 4 RTYEFDIVSK Unmodified 1256.6401 0.6401021 1060 Karp_00004 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 42.362 42.682 2 0.005392 13142 20181213_JW_Orientia_Karp_3_2 120.63 48.387 393380000 147750000 90345000 67923000 14567000 17888000 12768000 37309000 4823700 8008 1060 6850 48229;48230;48231;48232;48233;48234;48235;48236 30529;30530;30531;30532 30532 3 RVAGSVTELIQAAEAMK Oxidation (M) 1788.9404 0.94038322 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 53.651 53.918 3 0.0010233 21168 20181213_JW_Orientia_Karp_1_3 104.21 62.585 84813000 44603000 14871000 11469000 3695100 3930800 6244500 0 0 8009 2016 6851 48237;48238;48239;48240;48241;48242 30533;30534;30535;30536 30535 1543 4 RVAGSVTELIQAAEAMK Unmodified 1772.9455 0.94546859 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 60.869 61.131 3 0.00029101 26485 20181213_JW_Orientia_Karp_1_1 149.59 109.64 34639000 19807000 3242900 6880500 0 0 2758300 0 1950400 8010 2016 6851 48243;48244;48245;48246;48247 30537 30537 0 RVASSVFITLAPPR Unmodified 1512.8776 0.87764703 1921 Q8WUP2-3;Q8WUP2;E7EWE8;Q8WUP2-2;D6R9V9;D6R9I4;D6RA19;D6RAI6;E7EPI5;E7EN81 FBLIM1 Filamin-binding LIM protein 1 yes no 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 52.002 52.29 3 0.024338 18651 20181213_JW_Orientia_Karp_2_1 66.784 33.785 24035000 9292100 3764900 0 6960400 0 4017800 0 0 8011 1921 6852 48248;48249;48250;48251 30538 30538 1 RVCEEIAIIPSK Unmodified 1413.765 0.76498503 1572 P0CW22;P08708;H0YN88;A0A075B716;H0YN73 RPS17L;RPS17 40S ribosomal protein S17-like;40S ribosomal protein S17 yes no 0 0 0 1 By matching By MS/MS 1 1 43.578 43.753 3 0.025201 14999 20181213_JW_Orientia_Karp_1_2 81.565 32.485 16880000 5656500 11223000 0 0 0 0 0 0 8012 1572 6853 48252;48253 30539 30539 1 RVEELNNITEK Deamidation (NQ) 1344.6885 0.68850885 1086 Karp_01301;Karp_00209 yes no 0 1 0 1 By MS/MS 1 32.483 32.681 2 0.038909 9153 20181213_JW_Orientia_Karp_1_3 79.693 25.942 0 0 0 0 0 0 0 0 0 8013 1086 6854 48254 30540 30540 437 1 RVETSEHFR Unmodified 1159.5734 0.57341951 222 A0A024RBE7;P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 18.034 18.264 3 0.003517 3296 20181213_JW_Orientia_Karp_1_2 95.483 56.335 11038000 2111600 4853200 3492800 330570 0 0 249570 0 8014 222 6855 48255;48256;48257;48258;48259 30541 30541 1 RVFITDDFHDMMPK 2 Oxidation (M) 1782.8069 0.8069262 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71;B4DHT9 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 2 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 39.421 39.793 3 0.02773 12767 20181213_JW_Orientia_Karp_1_2 55.173 31.292 36697000 0 15657000 12351000 0 3616500 0 4456000 616210 8015 1598 6856 48260;48261;48262;48263;48264 30542 30542 1225;1226 1 RVGFQYEGTYK Unmodified 1346.6619 0.66190017 391 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;P11413-3;P11413-2;Q0PHS4 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 34.518 34.808 2 0.017866 10254 20181213_JW_Orientia_Karp_1_2 109.83 53.396 50967000 5608200 5455700 30076000 0 1962500 0 7864600 0 8016 391 6857 48265;48266;48267;48268;48269 30543 30543 1 RVHAPFVDDSEVEQVAK Unmodified 1924.9643 0.96428978 1314 Karp_01269 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 43.55 43.817 3 0.016409 14860 20181213_JW_Orientia_Karp_1_3 72.428 44.784 37146000 4938800 6623700 12515000 0 1542400 1710400 9815700 0 8017 1314 6858 48270;48271;48272;48273;48274;48275 30544;30545;30546 30544 3 RVIESMEQTSPNPSEIAQR Oxidation (M) 2187.059 0.058994802 1266 Karp_01074 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 36.663 37.021 3 2.0048E-07 11736 20181213_JW_Orientia_Karp_1_1 154.31 119.39 333250000 55713000 86602000 51614000 14817000 37933000 14424000 55712000 16432000 8018 1266 6859 48276;48277;48278;48279;48280;48281;48282;48283 30547;30548;30549;30550;30551;30552;30553;30554;30555;30556;30557;30558 30547 832 12 RVIESMEQTSPNPSEIAQR Unmodified 2171.0641 0.06408018 1266 Karp_01074 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 42.222 42.539 3 0.00085418 14669 20181213_JW_Orientia_Karp_1_1 103.99 61.944 519850000 168550000 132170000 117120000 34855000 0 10108000 57048000 0 8019 1266 6859 48284;48285;48286;48287;48288;48289 30559;30560;30561;30562;30563;30564;30565;30566 30559 8 RVIVCNTK Unmodified 988.54878 0.54878467 132 Q86TY5;Q6FGL0;A0A024R693;Q59FR8;P17931;G3V3R6;Q6NVH9 LGALS3;hCG_22119 Galectin;Galectin-3 yes no 0 0 0 1 By MS/MS 1 17.569 17.569 2 0.041047 3216 20181213_JW_Orientia_Karp_1_1 107.01 55.22 971960 971960 0 0 0 0 0 0 0 8020 132 6860 48290 30567 30567 1 RVLDELTLTK Unmodified 1186.6921 0.69213767 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 44.348 44.669 2 0.00010465 13981 20181213_JW_Orientia_Karp_3_2 161.51 73.335 395890000 52325000 114600000 45755000 24196000 73382000 40333000 33703000 11603000 + 8021 798 6861 48291;48292;48293;48294;48295;48296;48297;48298 30568;30569;30570;30571;30572;30573;30574;30575 30575 8 RVLGQLHGGPSSCSATGTNR Unmodified 2054.0076 0.007568354 801 CON__P15636 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16 13 14 14 15 14 14 16 31.011 31.364 2;3 2.4808E-09 7102 20181213_JW_Orientia_Karp_1_1 164.56 123.07 273170000000 706090000 9451500000 48550000000 59415000000 62326000000 43057000000 3770600000 45890000000 + 8022 801 6862 48299;48300;48301;48302;48303;48304;48305;48306;48307;48308;48309;48310;48311;48312;48313;48314;48315;48316;48317;48318;48319;48320;48321;48322;48323;48324;48325;48326;48327;48328;48329;48330;48331;48332;48333;48334;48335;48336;48337;48338;48339;48340;48341;48342;48343;48344;48345;48346;48347;48348;48349;48350;48351;48352;48353;48354;48355;48356;48357;48358;48359;48360;48361;48362;48363;48364;48365;48366;48367;48368;48369;48370;48371;48372;48373;48374;48375;48376;48377;48378;48379;48380;48381;48382;48383;48384;48385;48386;48387;48388;48389;48390;48391;48392;48393;48394;48395;48396;48397;48398;48399;48400;48401;48402;48403;48404;48405;48406;48407;48408;48409;48410;48411;48412;48413;48414 30576;30577;30578;30579;30580;30581;30582;30583;30584;30585;30586;30587;30588;30589;30590;30591;30592;30593;30594;30595;30596;30597;30598;30599;30600;30601;30602;30603;30604;30605;30606;30607;30608;30609;30610;30611;30612;30613;30614;30615;30616;30617;30618;30619;30620;30621;30622;30623;30624;30625;30626;30627;30628;30629;30630;30631;30632;30633;30634;30635;30636;30637;30638;30639;30640;30641;30642;30643;30644;30645;30646;30647;30648;30649;30650;30651;30652;30653;30654 30578 71 RVLGQLHGGPSSCSATGTNR Deamidation (NQ) 2054.9916 0.99158394 801 CON__P15636 yes yes 0 1 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 3 3 4 1 30.162 30.51 2;3 4.7528E-47 7271 20181213_JW_Orientia_Karp_1_1 249.58 199.23 5250100000 794840000 3050700000 264150000 349350000 69799000 16174000 664820000 40237000 + 8023 801 6862 48415;48416;48417;48418;48419;48420;48421;48422;48423;48424;48425;48426;48427;48428;48429;48430;48431;48432;48433;48434 30655;30656;30657;30658;30659;30660;30661;30662;30663;30664 30655 289;1656 8 RVLGQLHGGPSSCSATGTNRSDQYGR Deamidation (NQ) 2761.295 0.29503618 801 CON__P15636 yes yes 0 1 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 3 3 1 2 3 4 2 29.963 30.357 3;4 0.0008183 8134 20181213_JW_Orientia_Karp_1_2 83.359 54.854 1992300000 382300000 370320000 347030000 234730000 35399000 51247000 426500000 144790000 + 8024 801 6863 48435;48436;48437;48438;48439;48440;48441;48442;48443;48444;48445;48446;48447;48448;48449;48450;48451;48452;48453;48454 30665;30666;30667;30668;30669;30670;30671;30672;30673;30674;30675;30676 30666 289;1656;1657 12 RVLIAAHGNSLR Unmodified 1305.763 0.76295162 1608 Q6P6D7;Q6FHU2;Q53G35;P18669;B4DMJ7;B4DKL5;Q0D2Q6;Q6FHK8;B7Z9E5;B4DJA4;A4D2J6;P15259 PGAM1;hCG_2015269;PGAM2 Phosphoglycerate mutase;Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.713 26.072 3 0.0015628 5885 20181213_JW_Orientia_Karp_3_1 114.87 52.728 53421000 5631100 0 8536100 5254400 3677000 2460200 9891400 17971000 8025 1608 6864 48455;48456;48457;48458;48459;48460;48461;48462 30677;30678;30679;30680;30681;30682;30683;30684 30683 8 RVLIAAHGNSLR Deamidation (NQ) 1306.747 0.7469672 1608 Q6P6D7;Q6FHU2;Q53G35;P18669;B4DMJ7;B4DKL5;Q0D2Q6;Q6FHK8;B7Z9E5;B4DJA4;A4D2J6;P15259 PGAM1;hCG_2015269;PGAM2 Phosphoglycerate mutase;Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 2 28.998 29.363 3 0.0037045 7800 20181213_JW_Orientia_Karp_1_3 104.24 73.355 30950000 9726600 9732900 6155500 0 0 490720 4844300 0 8026 1608 6864 48463;48464;48465;48466;48467;48468;48469 30685;30686;30687;30688 30687 1068 4 RVLLSSLR Unmodified 942.59745 0.59744942 1219 Karp_00886 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 34.056 34.377 2 0.038047 9218 20181213_JW_Orientia_Karp_2_1 109.11 37.418 152370000 56711000 43810000 28215000 6462600 6066000 3093600 8014200 0 8027 1219 6865 48470;48471;48472;48473;48474;48475;48476 30689 30689 1 RVLQALEGLK Unmodified 1125.687 0.68699271 433 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 RPS19 40S ribosomal protein S19 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.687 41.007 2 9.451E-08 12987 20181213_JW_Orientia_Karp_2_3 196.79 124.56 514900000 139740000 127300000 62009000 35299000 19213000 33425000 69716000 28190000 8028 433 6866 48477;48478;48479;48480;48481;48482;48483;48484 30690;30691;30692;30693;30694;30695;30696;30697 30695 8 RVLQGQVISAK Unmodified 1197.7194 0.71935547 1233 Karp_00900 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 1 28.715 29.082 2;3 0.00040413 7000 20181213_JW_Orientia_Karp_2_1 161.51 85.342 146380000 38341000 22903000 25721000 11828000 7537700 7350700 14387000 18314000 8029 1233 6867 48485;48486;48487;48488;48489;48490;48491;48492;48493;48494;48495;48496;48497 30698;30699;30700;30701;30702;30703;30704 30700 7 RVMIGLTYIYGIGR Unmodified 1610.8967 0.89666791 1221 Karp_00888 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 60.761 61.001 3 0.0019645 25664 20181213_JW_Orientia_Karp_1_3 113.07 58.369 27734000 13534000 0 3998000 0 0 6694500 0 3507400 8030 1221 6868 48498;48499;48500;48501;48502 30705;30706;30707;30708 30707 4 RVMIGLTYIYGIGR Oxidation (M) 1626.8916 0.89158253 1221 Karp_00888 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 57.813 58.141 3 0.00054139 23983 20181213_JW_Orientia_Karp_1_3 124.48 81.188 15837000 0 0 4935600 0 4631700 5470500 0 799410 8031 1221 6868 48503;48504;48505;48506;48507;48508 30709;30710;30711;30712 30710 786 4 RVPFSLLR Unmodified 986.60253 0.6025348 1553 V9HW43;P04792;B4DL87;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.877 46.197 2 0.0059951 14491 20181213_JW_Orientia_Karp_3_2 176.09 55.466 2502600000 1016700000 414980000 488710000 165260000 146680000 222100000 14965000 33181000 8032 1553 6869 48509;48510;48511;48512;48513;48514;48515;48516 30713;30714;30715;30716;30717 30717 5 RVPGSPTNLANR Unmodified 1280.6949 0.69493163 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By MS/MS By matching 1 1 28.246 28.47 2 0.0036615 7122 20181213_JW_Orientia_Karp_1_3 139.86 71.842 7467700 0 0 7135800 0 0 331850 0 0 8033 195 6870 48517;48518 30718 30718 1 RVPISVISSSPQDITLETAVK Unmodified 2239.2424 0.24236212 1109 Karp_00291 yes yes 0 0 0 1 By MS/MS By MS/MS By matching 1 1 1 58.328 58.628 3 0.00016513 24474 20181213_JW_Orientia_Karp_1_2 116.27 96.982 160330000 100130000 60067000 0 0 0 0 129770 0 8034 1109 6871 48519;48520;48521 30719;30720 30720 2 RVPLSTYR Unmodified 990.56106 0.56106391 1139 Karp_00451 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 26.828 27.201 2 0.019116 6675 20181213_JW_Orientia_Karp_1_3 139.97 79.172 366340000 62977000 96776000 133000000 10374000 19954000 0 31737000 11523000 8035 1139 6872 48522;48523;48524;48525;48526;48527;48528 30721;30722;30723;30724;30725 30723 5 RVQDLSAGGQGSLTDSGPER Unmodified 2028.9825 0.98245904 1664 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 36.436 36.736 3 0.0063996 11245 20181213_JW_Orientia_Karp_1_2 95.365 67.515 49118000 17013000 13359000 18349000 0 0 0 395810 0 8036 1664 6873 48529;48530;48531;48532 30726;30727 30727 2 RVQELGNGISGLFK Deamidation (NQ) 1517.8202 0.82019173 1066 Karp_00014 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 55.156 55.423 3 0.00037403 22002 20181213_JW_Orientia_Karp_1_3 143.56 113.87 82473000 14522000 10838000 32399000 1393500 12929000 10391000 0 0 8037 1066 6874 48533;48534;48535;48536;48537;48538 30728;30729;30730;30731 30730 403 4 RVQGLEGPR Unmodified 1010.5621 0.56212655 839 D3DVC4;P48681;Q2YDX4 NES Nestin no no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 22.341 22.694 2 0.022789 4830 20181213_JW_Orientia_Karp_1_2 104.2 4.8226 13195000 2283100 5366000 1502300 1515500 750910 0 1061800 715030 8038 839 6875 48539;48540;48541;48542;48543;48544;48545 30732 30732 1 RVQIALAQYSGDPR Unmodified 1572.8372 0.83723877 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 42.122 42.289 3 0.025416 14091 20181213_JW_Orientia_Karp_1_2 65.809 27.869 24599000 14174000 9482400 0 0 942160 0 0 0 8039 852 6876 48546;48547;48548 30733 30733 1 RVSLEPHQGPGTPESK Unmodified 1717.8747 0.87474649 118 A0A024R5M9;Q4LE64;Q14980-2;Q14980;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q14980-5;Q9UNL7 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.617 25.962 3 0.01301 6186 20181213_JW_Orientia_Karp_1_3 88.951 47.126 32427000 7703600 8787600 3775500 1390100 1479100 547100 3528700 5215100 8040 118 6877 48549;48550;48551;48552;48553;48554;48555;48556 30734;30735;30736;30737;30738;30739 30736 6 RVTDEVVYLSALEEGR Unmodified 1834.9425 0.94249171 1170 Karp_00624 yes yes 0 0 0 1 By MS/MS By matching 1 1 57.265 57.364 3 0.010423 24154 20181213_JW_Orientia_Karp_1_1 90.853 65.617 57556000 54765000 0 2791500 0 0 0 0 0 8041 1170 6878 48557;48558 30740 30740 0 RVTLAINAGDK Unmodified 1156.6564 0.65642086 1217 Karp_00884 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 32.735 33.198 2 0.0027301 8806 20181213_JW_Orientia_Karp_2_1 137.01 60.528 76962000 0 0 0 27413000 15709000 5188800 14914000 13738000 8042 1217 6879 48559;48560;48561;48562;48563;48564;48565 30741;30742;30743;30744;30745 30743 5 RVTLAINAGDKK Unmodified 1284.7514 0.75138388 1217 Karp_00884 yes yes 0 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.86 26.205 3 0.00012117 6299 20181213_JW_Orientia_Karp_1_3 191.53 131.36 517450000 66755000 228210000 70495000 19096000 23782000 14208000 53660000 41251000 8043 1217 6880 48566;48567;48568;48569;48570;48571;48572;48573 30746;30747;30748;30749;30750;30751;30752 30748 7 RVTLAINAGDKK Deamidation (NQ) 1285.7354 0.73539946 1217 Karp_00884 yes yes 0 1 0 2 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 28.593 28.863 3 0.0042809 8038 20181213_JW_Orientia_Karp_1_1 112.44 54.164 20724000 5086500 4137200 8667000 1529500 1304000 0 0 0 8044 1217 6880 48574;48575;48576;48577;48578;48579 30753;30754;30755 30753 619 3 RVTNNAEKEMVK Oxidation (M) 1433.7297 0.72966216 708 B7WP88;O15050 TRANK1 TPR and ankyrin repeat-containing protein 1 yes no 0 0 1 2 By matching By MS/MS 1 1 64.844 65.244 2 0.0069369 22513 20181213_JW_Orientia_Karp_3_1 143.03 62.279 5767600 0 0 0 101070 0 0 5666500 0 8045 708 6881 48580;48581 30756 30756 425 1 RVVAEPVELAQEFR Unmodified 1641.8839 0.88385462 1524 Q9UF24;Q53FM7;O75489 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 51.486 51.788 3 0.00077849 19983 20181213_JW_Orientia_Karp_1_2 128.85 49.86 80217000 27632000 15676000 23189000 5458100 3140700 5042800 0 78768 8046 1524 6882 48582;48583;48584;48585;48586;48587;48588 30757;30758;30759;30760;30761 30758 5 RVYDQMTEPK Oxidation (M) 1281.6023 0.60233638 1406 Karp_02222 yes yes 0 0 1 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 20.557 20.824 2 0.028988 4003 20181213_JW_Orientia_Karp_1_3 81.525 37.874 6704600 2649600 1471600 918080 701870 496690 0 466720 0 8047 1406 6883 48589;48590;48591;48592;48593;48594 30762 30762 1015 0 RYESQLR Unmodified 950.49338 0.49337828 1503 Q5STK2;O15212 PFDN6 Prefoldin subunit 6 yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 16.454 16.877 2 0.018534 3276 20181213_JW_Orientia_Karp_1_3 166.78 33.822 47118000 0 11230000 6753100 5174300 4178700 62439 5043300 14677000 8048 1503 6884 48595;48596;48597;48598;48599;48600;48601 30763;30764;30765 30763 3 RYGIEASQDEINQFIAMEEK Oxidation (M) 2386.1111 0.11108995 1443 Karp_02418 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 58.98 59.273 3 7.8063E-38 22593 20181213_JW_Orientia_Karp_2_1 228.08 180.86 233970000 56702000 72867000 22077000 21051000 31970000 28868000 433980 0 8049 1443 6885 48602;48603;48604;48605;48606;48607;48608 30766;30767;30768;30769;30770;30771;30772;30773 30771 1042 8 RYGIEASQDEINQFIAMEEK Unmodified 2370.1162 0.11617533 1443 Karp_02418 yes yes 0 0 0 1 By MS/MS By matching By matching By MS/MS 1 1 1 1 62.053 62.241 3 0.002032 27121 20181213_JW_Orientia_Karp_1_1 160.76 102.98 94388000 73161000 6596700 0 0 6070000 8559700 0 0 8050 1443 6885 48609;48610;48611;48612 30774;30775 30774 2 RYHNLLIGDPTAER Unmodified 1653.8587 0.8587025 1360 Karp_01811 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 37.929 38.279 3 0.0063324 11510 20181213_JW_Orientia_Karp_3_1 92.65 30.993 58685000 17671000 14755000 12044000 3709100 0 0 10506000 0 8051 1360 6886 48613;48614;48615;48616;48617 30776;30777;30778;30779 30779 4 RYIFDNVAK Unmodified 1124.5978 0.59784335 1805 V9HW95;Q15293;Q15293-2 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.601 38.909 2 0.0025704 11927 20181213_JW_Orientia_Karp_2_3 155.58 102.65 182320000 31507000 54282000 14852000 29638000 8469500 9594200 33976000 0 8052 1805 6887 48618;48619;48620;48621;48622;48623;48624 30780;30781;30782;30783;30784;30785;30786 30785 7 RYIILQDNGIGMNK Oxidation (M);Deamidation (NQ) 1650.8399 0.83994089 1251 Karp_00928 yes yes 0 1 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 2 1 2 46.105 46.425 2;3 0.00011191 15681 20181213_JW_Orientia_Karp_1_3 169.09 90.187 216870000 72682000 58172000 46968000 4872300 0 21113000 1762600 11301000 8053 1251 6888 48625;48626;48627;48628;48629;48630;48631;48632;48633;48634;48635;48636 30787;30788;30789;30790;30791 30789 652;1823 812 5 RYIILQDNGIGMNK Deamidation (NQ) 1634.845 0.84502627 1251 Karp_00928 yes yes 0 1 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 50.779 51.086 2;3 0.00015193 19373 20181213_JW_Orientia_Karp_1_3 153.81 87.785 146010000 37169000 37861000 27062000 15645000 8908400 14557000 4810100 0 8054 1251 6888 48637;48638;48639;48640;48641;48642;48643;48644 30792;30793;30794;30795;30796;30797 30793 652;1823 6 RYILHASTK Unmodified 1087.6138 0.61382777 1424 Karp_02310 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 18.741 18.974 3 0.0050522 3436 20181213_JW_Orientia_Karp_3_1 92.538 57.027 14595000 5875000 3100300 3432000 953900 0 691260 542720 0 8055 1424 6889 48645;48646;48647;48648;48649;48650 30798;30799;30800;30801;30802 30802 5 RYILPMFPYPSGK Oxidation (M) 1583.817 0.8170206 1423 Karp_02309 yes yes 0 0 1 1 By MS/MS By matching 1 1 54.725 54.999 3 0.0093153 22151 20181213_JW_Orientia_Karp_1_2 80.318 46.633 12461000 0 9606000 2854900 0 0 0 0 0 8056 1423 6890 48651;48652 30803 30803 1023 1 RYKATTNQTWNVK Acetyl (Protein N-term);3 Deamidation (NQ) 1653.7999 0.79985021 1857 Q5VWK5-2 yes yes 1 3 0 2 By MS/MS 1 42.118 42.369 2 0.0026695 13672 20181213_JW_Orientia_Karp_2_3 108.31 32.747 0 0 0 0 0 0 0 0 0 8057 1857 6891 48653 30804 30804 1177;1178;2010 1 RYPPGTSLSR Unmodified 1132.5989 0.59890598 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 25.956 26.225 2 0.0095674 5987 20181213_JW_Orientia_Karp_3_1 114.86 63.799 153800000 47778000 25781000 57890000 4652400 0 0 17700000 0 8058 1466;1549 6892 48654;48655;48656;48657;48658 30805;30806;30807;30808 30808 4 RYPSSISSSPQK Unmodified 1335.6783 0.67827852 666 B4DZJ6;F8W726;B4DYY5;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 23.716 24.097 2 0.0075146 4934 20181213_JW_Orientia_Karp_2_1 126.03 68.476 16269000 0 3009600 3592600 1758400 1551100 1909300 2187600 2260700 8059 666 6893 48659;48660;48661;48662;48663;48664;48665 30809;30810;30811 30810 3 RYQKSTELLIR Unmodified 1405.8041 0.80414773 1749;1853 P68431;Q71DI3;Q16695;Q5TEC6 HIST1H3A;HIST2H3A;HIST3H3;HIST2H3PS2 Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3 no no 0 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 28.26 28.648 3 0.0019755 7405 20181213_JW_Orientia_Karp_1_2 128.36 76.384 161160000 62974000 71898000 19853000 1028200 633960 0 2613500 2156100 8060 1749;1853 6894 48666;48667;48668;48669;48670;48671;48672 30812;30813;30814;30815 30813 4 RYVDLLCPVDK Unmodified 1376.7122 0.71222118 1100 Karp_00268 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 48.029 48.299 3 0.019655 17687 20181213_JW_Orientia_Karp_1_2 83.226 39.268 73865000 17307000 29566000 9320800 11459000 0 6212600 0 0 8061 1100 6895 48673;48674;48675;48676;48677 30816;30817;30818;30819 30817 4 RYYGGCEFIDEVEGLAIDR Unmodified 2261.0423 0.042282105 1140 Karp_00452 yes yes 0 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 66.226 66.325 3 0.019619 28909 20181213_JW_Orientia_Karp_1_3 117.78 65 13017000 2549800 1568800 6092100 0 0 2806700 0 0 8062 1140 6896 48678;48679;48680;48681 30820;30821 30820 2 SAADEVDGLGVARPHYGSVLDNER Acetyl (Protein N-term) 2568.2205 0.22045748 235 A4QPB0;A0A024RC65;P46940;Q6P1N4;H0YLE8;B4E2M0;Q5FWG8;Q05DN7 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 1 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 55.274 55.541 3 0.0012946 22065 20181213_JW_Orientia_Karp_1_3 93.062 67.057 115280000 38234000 27178000 35895000 2489700 6156400 5326200 0 0 8063 235 6897 48682;48683;48684;48685;48686;48687 30822;30823;30824;30825;30826 30825 5 SAADISQSTQNSSPATPTGTGQQQEPQK Unmodified 2843.3169 0.31693664 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 36.742 37.016 2;3 4.575E-11 11332 20181213_JW_Orientia_Karp_1_2 169.91 150.36 236150000 44510000 79102000 48208000 64336000 0 0 0 0 8064 1266 6898 48688;48689;48690;48691;48692;48693 30827;30828;30829;30830;30831 30828 5 SAADISQSTQNSSPATPTGTGQQQEPQK Deamidation (NQ) 2844.301 0.30095223 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 37.9 38.174 3 2.7753E-08 11988 20181213_JW_Orientia_Karp_1_2 132.94 102.68 127470000 40809000 27842000 51525000 7294900 0 0 0 0 8065 1266 6898 48694;48695;48696;48697 30832;30833;30834 30833 682;1829;1830;1831;1832 3 SAADISQSTQNSSPATPTGTGQQQEPQK 2 Deamidation (NQ) 2845.285 0.28496781 1266 Karp_01074 yes yes 0 2 0 0 By MS/MS By MS/MS 1 1 37.91 38.51 3 0.0027981 11668 20181213_JW_Orientia_Karp_3_1 91.583 69.262 0 0 0 0 0 0 0 0 0 8066 1266 6898 48698;48699 30835;30836 30836 682;1829;1830;1831;1832 2 SAAEMYGSSFDLDYDFQR Oxidation (M) 2116.8684 0.86840006 452 B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251;G3V2D6 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 62.793 63.113 2 1.1961E-16 24381 20181213_JW_Orientia_Karp_2_2 195.71 160.41 10181000 0 0 5290200 0 3191000 0 0 1700100 8067 452 6899 48700;48701;48702;48703 30837;30838;30839;30840 30839 300 4 SAAEMYGSSFDLDYDFQR Unmodified 2100.8735 0.87348544 452 B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251;G3V2D6 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 66.454 66.603 2 0.00056392 29187 20181213_JW_Orientia_Karp_1_3 145.61 111.11 16799000 5977700 5169900 4716900 934980 0 0 0 0 8068 452 6899 48704;48705;48706;48707 30841 30841 1 SAAEMYGSSFDLDYDFQR Oxidation (M);Deamidation (NQ) 2117.8524 0.85241565 452 B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251;G3V2D6 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 1 1 0 By MS/MS By MS/MS 1 1 62.873 63.123 2 0.021437 24753 20181213_JW_Orientia_Karp_2_3 90.689 62.954 0 0 0 0 0 0 0 0 0 8069 452 6899 48708;48709 30842;30843 30843 1454 300 2 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR Oxidation (M) 3448.5405 0.54053057 400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 67.775 68.045 3 0.0025505 26590 20181213_JW_Orientia_Karp_3_2 62.67 40.574 8941600 0 0 0 0 0 1607300 3755900 3578400 8070 400 6900 48710;48711;48712 30844 30844 276 1 SAAIAHLTAGAK Unmodified 1109.6193 0.61930707 1432 Karp_02389 yes yes 0 0 0 0 By MS/MS 1 28.643 28.993 2 0.0043904 7421 20181213_JW_Orientia_Karp_1_2 126.39 82.618 0 0 0 0 0 0 0 0 0 8071 1432 6901 48713 30845 30845 1 SAAQAAAQTNSNAAGK Unmodified 1459.7015 0.70153315 832 Q63HR1;Q5VU21;D3DQ69;Q8NC51-4;Q8NC51-3;D3DQ70;Q8NC51-2;Q8NC51 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 19.605 19.843 2 3.0527E-38 3950 20181213_JW_Orientia_Karp_1_1 253.97 194.04 2314700 1207000 0 0 622780 189580 295280 0 0 8072 832 6902 48714;48715;48716;48717 30846;30847;30848 30846 3 SAAQAAAQTNSNAAGK Deamidation (NQ) 1460.6855 0.68554874 832 Q63HR1;Q5VU21;D3DQ69;Q8NC51-4;Q8NC51-3;D3DQ70;Q8NC51-2;Q8NC51 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 1 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 21.563 21.921 2 1.2573E-08 3537 20181213_JW_Orientia_Karp_2_2 181.98 127.44 4510800 398940 0 1336800 532900 352840 829880 681350 378150 8073 832 6902 48718;48719;48720;48721;48722;48723;48724 30849 30849 305 1 SACDFTAPAVLPK Unmodified 1375.6806 0.6805867 1399 Karp_02188 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 1 2 2 54.611 55.036 2 2.5794E-11 20209 20181213_JW_Orientia_Karp_2_1 200.71 115.96 2838400000 447410000 561310000 1159400000 185290000 224080000 218620000 1946900 40383000 8074 1399 6903 48725;48726;48727;48728;48729;48730;48731;48732;48733;48734;48735 30850;30851;30852;30853;30854;30855;30856;30857;30858 30853 9 SACDTVDTWLDDTAK Unmodified 1696.725 0.72503029 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 1 58.898 59.248 2 0.015228 24878 20181213_JW_Orientia_Karp_1_2 89.013 40.573 4755200 0 4755200 0 0 0 0 0 0 8075 1796 6904 48736 30859 30859 1 SADFVVESIGSEVGSLGFAIEGPSQAK Unmodified 2680.3232 0.32319122 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 75.053 75.062 3 0.00044877 35084 20181213_JW_Orientia_Karp_1_2 78.236 42.533 62593000 20702000 11548000 26211000 988170 3143000 0 0 0 8076 1520 6905 48737;48738;48739;48740;48741 30860;30861 30861 2 SADLQTPEK Unmodified 987.48729 0.48728985 1404 Karp_02212 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 26.679 27.02 2 0.0098378 6579 20181213_JW_Orientia_Karp_1_2 94.409 52.983 21721000 4130500 10687000 0 1438500 1541700 0 3923700 0 8077 1404 6906 48742;48743;48744;48745;48746 30862 30862 1 SADTLWGIQK Unmodified 1117.5768 0.57677356 587 B4DJI1;V9HWB9;P00338-4;P00338;P00338-3 HEL-S-133P;LDHA L-lactate dehydrogenase;L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 50.232 50.493 2 9.4935E-09 17941 20181213_JW_Orientia_Karp_2_3 204.27 125.49 77980000 17072000 16839000 0 22812000 8694600 12563000 0 0 8078 587 6907 48747;48748;48749;48750;48751;48752;48753;48754 30863;30864;30865;30866;30867;30868;30869;30870;30871 30870 9 SAEDILQSTQHSSPVTPTATAQQHEPQK Unmodified 3015.4534 0.45337054 1266 Karp_01074 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 1 41.651 41.901 3;4 6.2501E-15 13797 20181213_JW_Orientia_Karp_1_3 161.56 129.3 1697300000 391640000 722090000 291070000 54849000 121850000 73096000 42732000 0 8079 1266 6908 48755;48756;48757;48758;48759;48760;48761;48762;48763;48764;48765 30872;30873;30874;30875;30876;30877 30873 6 SAEFLLHMLK Unmodified 1187.6373 0.63726532 66 J3QS96;J3QQT2;J3KRX5;A0A024R261;P18621;P18621-3;J3KRB3;J3QLC8;P18621-2 RPL17;hCG_24487 60S ribosomal protein L17 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 56.717 56.843 3 0.0036819 23803 20181213_JW_Orientia_Karp_1_1 112.11 48.681 20097000 18551000 0 0 0 0 1545500 0 0 8080 66 6909 48766;48767;48768 30878;30879 30878 2 SAEGNALNVEVIR Deamidation (NQ) 1371.6994 0.69940789 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.953 54.275 2 2.4132E-07 21581 20181213_JW_Orientia_Karp_1_2 190.66 107.83 90614000 33267000 18908000 12593000 6181500 10023000 9517200 124160 0 8081 1266 6910 48769;48770;48771;48772;48773;48774;48775 30880;30881;30882 30881 683 3 SAEGNALNVEVIR Unmodified 1370.7154 0.7153923 1266 Karp_01074 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 49.258 49.56 2 3.8582E-07 18253 20181213_JW_Orientia_Karp_1_3 203.61 116.14 257280000 30722000 0 115660000 56362000 26485000 0 0 28050000 8082 1266 6910 48776;48777;48778;48779;48780 30883 30883 1 SAELPDAVGPIVQLQEK Unmodified 1792.9571 0.95707914 1950 Q96PU8-5;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8;F5H5U6;F5H8C8;F5GXS8;F5GYM3;H0YG47;F5GYT7 QKI Protein quaking yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 63.798 64.007 2 0.0031487 27874 20181213_JW_Orientia_Karp_1_2 104.17 62.891 39834000 12194000 8821800 15413000 359160 0 1780200 0 1266800 8083 1950 6911 48781;48782;48783;48784;48785;48786 30884 30884 1 SAESPTSPVTSETGSTFK Unmodified 1811.8425 0.84250289 1764 Q02952-3;Q02952-2;Q02952;Q86TJ9 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 42.083 42.443 2 5.7724E-54 13577 20181213_JW_Orientia_Karp_3_1 259.27 190.74 93278000 21814000 20440000 16708000 11754000 0 0 18615000 3946200 8084 1764 6912 48787;48788;48789;48790;48791;48792 30885;30886;30887;30888;30889;30890;30891 30890 7 SAFVMEK Oxidation (M) 826.38949 0.38949006 630 F8WCE5;B4DR62;Q96KR4-2;Q96KR4;Q96KR4-3 LMLN Leishmanolysin-like peptidase yes no 0 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 30.054 30.364 2 0.024848 7630 20181213_JW_Orientia_Karp_3_1 89.673 89.673 40444000 10816000 14017000 10756000 0 0 1627700 3227000 0 8085 630 6913 48793;48794;48795;48796;48797;48798;48799 30892;30893;30894;30895 30894 391 4 SAGFFLVK Unmodified 867.48544 0.48543935 1444 Karp_02422 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 54.11 54.36 2 0.0059163 21422 20181213_JW_Orientia_Karp_1_3 116.88 66.859 135150000 36110000 0 75874000 2780400 6927200 13461000 0 0 8086 1444 6914 48800;48801;48802;48803;48804;48805 30896;30897;30898;30899 30897 4 SAGLPSHSSVISQHSK Unmodified 1620.822 0.82198264 1753 P82909 MRPS36 28S ribosomal protein S36, mitochondrial yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 25.233 25.584 3 0.014323 5079 20181213_JW_Orientia_Karp_2_2 82.529 60.331 41013000 3738900 7288600 2042700 4668100 8754600 3926000 7758800 2835200 8087 1753 6915 48806;48807;48808;48809;48810;48811;48812;48813 30900;30901;30902 30902 3 SAGQGEVLVYVEDPAGHQEEAK Unmodified 2312.0921 0.092069069 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 48.521 48.857 3 0.0052916 18399 20181213_JW_Orientia_Karp_1_1 75.017 43.528 88735000 30708000 43922000 0 0 3993000 4328100 168030 5615900 8088 1615 6916 48814;48815;48816;48817;48818;48819 30903;30904;30905 30903 3 SAGTYAVLLNK Unmodified 1135.6237 0.62372375 1239 Karp_00906 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.079 47.352 2 2.4305E-25 17046 20181213_JW_Orientia_Karp_1_2 243.03 171.15 245540000 69283000 66607000 49203000 20331000 7935500 17185000 0 14993000 8089 1239 6917 48820;48821;48822;48823;48824;48825;48826 30906;30907;30908;30909;30910;30911;30912 30907 7 SAGVCIAESPAK Unmodified 1188.5809 0.58087266 1120 Karp_00318 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 35.548 35.921 2 0.00034421 11270 20181213_JW_Orientia_Karp_1_1 155.11 94.287 168620000 53901000 27664000 35136000 9256200 8058500 0 28683000 5921000 8090 1120 6918 48827;48828;48829;48830;48831;48832;48833;48834 30913;30914;30915;30916;30917;30918;30919 30913 7 SAHLQWMVVR Acetyl (Protein N-term);Oxidation (M) 1283.6445 0.64447597 981 H0YKD8;P46779;P46779-2;P46779-3;H0YMF4;P46779-4;P46779-5;H0YLP6 RPL28 60S ribosomal protein L28 yes no 1 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 51.865 52.166 2 0.0044055 20629 20181213_JW_Orientia_Karp_1_1 98.044 59.741 54735000 18350000 7514000 14738000 3411000 5869700 4108500 0 743770 8091 981 6919 48835;48836;48837;48838;48839;48840;48841 30920;30921;30922 30920 543 3 SAIFHFESAVEK Unmodified 1363.6772 0.67721588 1578 P09914-2;P09914 IFIT1 Interferon-induced protein with tetratricopeptide repeats 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 46.29 46.49 3 0.027152 16272 20181213_JW_Orientia_Karp_1_3 60.301 19.924 51028000 13070000 24035000 10070000 0 0 3853400 0 0 8092 1578 6920 48842;48843;48844;48845 30923;30924 30924 2 SAINEVVTR Unmodified 987.53491 0.53490874 444 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899-3;P62899;P62899-2;B8ZZK4 RPL31 60S ribosomal protein L31 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.009 36.33 2 0.00032289 11493 20181213_JW_Orientia_Karp_1_1 162.64 69.493 185510000 39087000 71867000 40938000 4288400 5493200 2913900 20920000 0 8093 444 6921 48846;48847;48848;48849;48850;48851;48852 30925;30926;30927;30928;30929;30930;30931;30932 30925 8 SAINSSQLQINEAR Unmodified 1529.7798 0.77978347 1278 Karp_01110 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 42.111 42.439 2 4.413E-06 14164 20181213_JW_Orientia_Karp_1_2 190.34 107.84 17744000 6835100 0 0 0 1056200 0 8568000 1284600 8094 1278 6922 48853;48854;48855;48856;48857;48858 30933;30934;30935;30936 30934 4 SAIQNLHSFDPFADASK Acetyl (Protein N-term) 1888.8955 0.89554151 1055 Q6IAV3;K7EM18;P41567 SUI1;EIF1 Eukaryotic translation initiation factor 1 yes no 1 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.576 70.692 2 1.2549E-22 28675 20181213_JW_Orientia_Karp_2_1 219.95 173.22 125820000 30359000 18225000 21188000 0 16342000 13252000 26457000 0 8095 1055 6923 48859;48860;48861;48862;48863;48864;48865 30937;30938;30939;30940;30941;30942;30943 30940 7 SAIVHLINYQDDAELATR Unmodified 2028.0276 0.027618319 924;555;59 B4DE59;C9JTX4;C9J826;C9JK18;C9JKY1;F5GWP8;A0A024R1X8;P14923 JUP;KRT17 Junction plakoglobin no no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 53.986 54.253 3 4.237E-05 21648 20181213_JW_Orientia_Karp_1_2 139.12 72.384 77660000 18921000 15474000 14429000 7419300 10914000 10503000 0 0 8096 555;924;59 6924 48866;48867;48868;48869;48870;48871 30944;30945 30944 2 SALFAQINQGESITHALK Unmodified 1927.0163 0.016325351 498 D3DPU2;B2RDY9;B4DNW7;B4DI38;B4DNY3;B4DNA3;B4DUZ8 CAP1 Adenylyl cyclase-associated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.375 54.652 3 0.0032188 19966 20181213_JW_Orientia_Karp_2_2 93.738 57.716 321020000 71924000 85363000 70576000 0 49618000 33776000 0 9764700 8097 498 6925 48872;48873;48874;48875;48876;48877 30946;30947;30948;30949;30950;30951 30949 6 SALGVANLPGK Unmodified 1025.5869 0.58694431 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.68 44.973 2 1.994E-05 15687 20181213_JW_Orientia_Karp_1_2 169.41 80.587 362600000 91336000 100810000 98386000 22582000 14661000 22990000 11837000 0 8098 1262 6926 48878;48879;48880;48881;48882;48883;48884 30952;30953;30954;30955;30956;30957;30958 30953 7 SALIEQPVVTSAK Unmodified 1341.7504 0.75038083 1362 Karp_01816 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.447 46.767 2 0.0085305 16458 20181213_JW_Orientia_Karp_1_3 101.39 40.954 121060000 38640000 26564000 18460000 13819000 5452100 7391400 1085400 9652400 8099 1362 6927 48885;48886;48887;48888;48889;48890;48891;48892 30959 30959 1 SALQEWSQSK Unmodified 1162.5619 0.56185177 1195 Karp_00807 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 37.897 38.085 2 0.0009966 11925 20181213_JW_Orientia_Karp_1_2 123.11 55.618 17290000 7029800 6687600 0 0 2284300 1287900 0 0 8100 1195 6928 48893;48894;48895;48896 30960;30961 30960 2 SALSGHLETVILGLLK Unmodified 1649.9716 0.97160699 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YM50;H0YKS4;B4DNH8;H0YNP5;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YKL9;H0YMW4 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 1 72.063 72.133 2;3 2.5558E-09 33102 20181213_JW_Orientia_Karp_1_2 190.36 151.09 332380000 11192000 75189000 4866000 18466000 67875000 16493000 138300000 0 8101 124 6929 48897;48898;48899;48900;48901;48902;48903;48904;48905;48906;48907 30962;30963;30964;30965;30966;30967;30968 30964 7 SAMPFTASPASSTTAR Oxidation (M) 1597.7406 0.74062078 1487 V9HW92;O00151 HEL-S-112;PDLIM1 PDZ and LIM domain protein 1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.973 38.29 2 1.283E-05 12417 20181213_JW_Orientia_Karp_1_1 160.56 92.856 105820000 23711000 12399000 26868000 9544000 10264000 0 23038000 0 8102 1487 6930 48908;48909;48910;48911;48912;48913 30969;30970;30971;30972;30973;30974 30969 1099 6 SAPATGGVK Unmodified 786.42357 0.42356738 1749;1853 P68431;Q71DI3;Q16695;Q5TEC6 HIST1H3A;HIST2H3A;HIST3H3;HIST2H3PS2 Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3 no no 0 0 0 0 By MS/MS By matching By matching 1 1 1 17.073 17.372 2 0.0325 2912 20181213_JW_Orientia_Karp_1_3 76.478 36.209 4914700 0 0 3827300 661360 0 0 426070 0 8103 1749;1853 6931 48914;48915;48916 30975 30975 1 SAQIANELQQK Unmodified 1228.6412 0.64116473 1309 Karp_01250 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 34.426 34.757 2 0.00064349 10663 20181213_JW_Orientia_Karp_1_1 150.15 67.873 44040000 13435000 7561000 13336000 0 1967900 1130600 4505600 2104000 8104 1309 6932 48917;48918;48919;48920;48921;48922;48923 30976;30977;30978 30976 3 SASQNSSISAEQR Unmodified 1363.6328 0.63278489 1067 Karp_00016 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.699 22.065 2 1.0396E-18 4253 20181213_JW_Orientia_Karp_2_1 225.55 126.97 31154000 9882700 11132000 0 2484300 1654000 2347600 2541800 1110900 8105 1067 6933 48924;48925;48926;48927;48928;48929;48930;48931 30979;30980;30981;30982;30983;30984;30985;30986;30987 30983 9 SASQNSSISAEQR Deamidation (NQ) 1364.6168 0.61680047 1067 Karp_00016 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 23.917 24.319 2 0.00010271 5058 20181213_JW_Orientia_Karp_2_1 169.89 96.658 5568900 0 0 945920 791880 813900 594710 1805400 617100 8106 1067 6933 48932;48933;48934;48935;48936;48937;48938;48939 30988;30989;30990;30991;30992 30991 406 5 SATTGSWDEVFAK Unmodified 1397.6463 0.64630969 1134 Karp_00400 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.077 54.434 2 1.1876E-34 22062 20181213_JW_Orientia_Karp_1_1 252.14 188.45 727460000 187900000 122150000 221780000 64878000 62143000 54123000 219700 14278000 8107 1134 6934 48940;48941;48942;48943;48944;48945;48946;48947 30993;30994;30995;30996;30997;30998;30999;31000;31001 30993 9 SAVGFEYQGK Unmodified 1084.5189 0.51892433 117 A0A024R5M3;Q53HG7;Q14247-3;Q14247;Q14247-2;Q76MU0;H7C314 CTTN;EMS1 Src substrate cortactin yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 38.384 38.85 2 0.009425 11842 20181213_JW_Orientia_Karp_3_1 94.409 65.26 15416000 0 0 4190000 6177200 0 0 5048600 0 8108 117 6935 48948;48949;48950 31002 31002 1 SAVGFNEMEAPTTAYK Oxidation (M) 1730.7822 0.78215124 627 B4DQ92;E7EVW7;P14317 HCLS1 Hematopoietic lineage cell-specific protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 44.495 44.871 2 0.0012606 15108 20181213_JW_Orientia_Karp_2_3 121.24 74.42 13907000 0 0 0 4733400 2680300 2513300 3979800 0 8109 627 6936 48951;48952;48953;48954;48955;48956 31003;31004;31005;31006;31007 31005 386 5 SAVNQPIK Unmodified 855.48142 0.48141661 1318 Karp_01280 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 24.265 24.645 2 0.0070035 5660 20181213_JW_Orientia_Karp_1_3 113.41 36.565 61757000 0 17671000 12301000 124870 8047300 4129100 12443000 7041000 8110 1318 6937 48957;48958;48959;48960;48961;48962;48963 31008;31009;31010 31008 3 SAVTTVVNPK Unmodified 1014.571 0.5709599 1559 P05556 ITGB1 Integrin beta-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 33.327 33.7 2 0.0012307 9710 20181213_JW_Orientia_Karp_1_2 119.68 64.958 116200000 26786000 39976000 31829000 5407100 2711100 0 6566900 2920000 8111 1559 6938 48964;48965;48966;48967;48968;48969;48970 31011;31012;31013;31014 31012 4 SAYGGPVGAGIR Unmodified 1103.5724 0.57235688 811 CON__Q3KNV1;P08729;CON__P08729;CON__Q9DCV7 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 38.709 39.042 2 0.00099826 11924 20181213_JW_Orientia_Karp_3_1 133.99 80.397 324000000 118270000 109260000 54833000 13995000 0 7074900 20568000 0 + 8112 811 6939 48971;48972;48973;48974;48975;48976;48977 31015;31016;31017;31018 31018 4 SAYNVYVAER Unmodified 1170.5669 0.56693715 863 H7BYN3;Q6LES8;E5KSX8;E5KSU5;Q00059 TFAM Transcription factor A, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.972 40.332 2 6.4279E-05 13035 20181213_JW_Orientia_Karp_1_2 152.54 84.546 137140000 54130000 25023000 29399000 10672000 0 0 15526000 2394200 8113 863 6940 48978;48979;48980;48981;48982;48983;48984 31019;31020;31021;31022;31023;31024;31025 31020 7 SAYQEAMDISK Unmodified 1241.5598 0.55980286 1651 P31947-2;P31947 SFN 14-3-3 protein sigma yes no 0 0 0 0 By MS/MS 1 41.752 41.752 2 0.018922 14334 20181213_JW_Orientia_Karp_1_1 85.924 47.209 20451000 20451000 0 0 0 0 0 0 0 8114 1651 6941 48985 31026 31026 1 SCAAAGTECLISGWGNTK Unmodified 1881.8349 0.83493187 787 CON__P00761 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 54.152 54.335 2 6.36E-68 21398 20181213_JW_Orientia_Karp_1_3 275.82 184.99 213750000 122380000 41076000 50290000 0 0 0 0 0 + 8115 787 6942 48986;48987;48988 31027 31027 1 SCAEWVSLSK Unmodified 1165.5438 0.54375887 1526 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.242 46.602 2 0.0052561 16392 20181213_JW_Orientia_Karp_1_3 102.06 59.871 40727000 9630400 9333500 12769000 2521300 0 0 110960 6362600 8116 1526 6943 48989;48990;48991;48992;48993;48994 31028 31028 1 SCCSCCPVGCAK Unmodified 1444.5026 0.50258081 141 Q8WVB5;Q8TDC4;CON__P67983;A0A024R6T4;Q8N339;P80297;P13640-2;P04732;P02795;P13640 MT1X;MT1M;MT1G;MT1E;MT2A Metallothionein;Metallothionein-1M;Metallothionein-1X;Metallothionein-1G;Metallothionein-1E;Metallothionein-2 yes no 0 0 0 0 By MS/MS By matching 1 1 24.656 24.83 2 0.00078569 6005 20181213_JW_Orientia_Karp_1_1 140.45 132.8 2010200 1596300 0 0 413860 0 0 0 0 + 8117 141 6944 48995;48996 31029 31029 1 SCFTSIIPTK Unmodified 1152.5849 0.5848954 1432 Karp_02389 yes yes 0 0 0 0 By MS/MS By matching 1 1 51.821 52.401 2 0.00068461 18820 20181213_JW_Orientia_Karp_2_1 130.66 90.589 8872700 0 0 0 8633000 0 0 0 239680 8118 1432 6945 48997;48998 31030 31030 1 SCGAVPVPYEDLPVILPEHGVEFTGK Unmodified 2809.3997 0.3996674 1423 Karp_02309 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 71.45 71.525 3 0.00060543 26069 20181213_JW_Orientia_Karp_3_1 80.314 49.722 309480000 108540000 53236000 0 18195000 33319000 29872000 66322000 0 8119 1423 6946 48999;49000;49001;49002;49003;49004 31031;31032;31033;31034;31035;31036;31037;31038 31037 8 SCMLTGTPESVQSAK Oxidation (M) 1610.728 0.72800718 638 B4E0X8;B4DWL1;E9PEB5;B4DT31;Q96AE4;Q96AE4-2;Q6PJY1;C9JSZ1 FUBP1 Far upstream element-binding protein 1 yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 35.708 36.126 2 0.019414 10479 20181213_JW_Orientia_Karp_3_1 82.362 55.576 5128800 0 2400400 0 0 500090 0 2228300 0 8120 638 6947 49005;49006;49007 31039 31039 395 1 SCQYQGDDTEITVK Unmodified 1642.7145 0.7144656 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 38.569 38.886 2 2.2428E-25 12351 20181213_JW_Orientia_Karp_1_2 234.87 182.7 64586000 19181000 17977000 17432000 4818100 698960 0 4479100 0 8121 1395 6948 49008;49009;49010;49011;49012;49013 31040;31041;31042;31043 31041 4 SDAAVDTSSEITTK Acetyl (Protein N-term) 1465.6784 0.67839767 746 Q15203;Q7KZ52;B8ZZQ6;V9HVW6;Q15202;Q8TBK9;Q86YS2;Q53S24;Q15204;P06454-2;P06454 PTMA;PTMAP7 Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 1 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 48.679 48.939 2 1.1199E-11 18293 20181213_JW_Orientia_Karp_1_1 199.8 117.05 103210000 84585000 7196400 0 5287100 2630600 3513700 0 0 8122 746 6949 49014;49015;49016;49017;49018 31044 31044 1 SDALETLGFLNHYQMK Oxidation (M) 1881.8931 0.89309867 477 B2R959;Q6NTA2;P14866;M0QXS5;P14866-2;M0QYT0;M0R076 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 58.906 59.218 3 0.035582 24895 20181213_JW_Orientia_Karp_1_2 67.964 36.574 24206000 0 9683800 7844600 2789000 0 3888400 0 0 8123 477 6950 49019;49020;49021;49022 31045 31045 1 SDEDLSYINSFTK Unmodified 1517.6886 0.68856843 1322 Karp_01288 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 58.543 58.693 2 2.8399E-07 24208 20181213_JW_Orientia_Karp_1_3 185.3 89.816 56801000 27185000 0 22302000 0 7314200 0 0 0 8124 1322 6951 49023;49024;49025;49026 31046;31047;31048 31047 3 SDEDLSYINSFTK Deamidation (NQ) 1518.6726 0.67258402 1322 Karp_01288 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 55.977 56.353 2 0.0055322 22609 20181213_JW_Orientia_Karp_1_3 117.86 70.301 30768000 10007000 0 9690700 3522200 6363600 0 656830 527140 8125 1322 6951 49027;49028;49029;49030;49031;49032;49033 31049;31050 31050 765 2 SDENEDPSVVGEFK Unmodified 1550.6736 0.67364665 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 48.267 48.367 2 0.023314 18070 20181213_JW_Orientia_Karp_1_1 83.182 43.334 4775100 2459600 0 2315500 0 0 0 0 0 8126 1991 6952 49034;49035 31051;31052 31051 2 SDFGTSSAR Unmodified 926.40937 0.40937388 1100 Karp_00268 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 23.582 23.976 2 0.00024541 5315 20181213_JW_Orientia_Karp_1_2 172.25 85.067 97635000 0 27018000 16006000 14284000 11713000 6537800 13719000 8357100 8127 1100 6953 49036;49037;49038;49039;49040;49041;49042 31053;31054;31055;31056;31057;31058 31053 6 SDFLIQTNQSR Unmodified 1307.647 0.64697839 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 46.241 46.519 2 0.00095709 16497 20181213_JW_Orientia_Karp_1_2 130.01 76.323 102080000 57621000 31440000 0 0 0 6520000 0 6503900 8128 1318 6954 49043;49044;49045;49046 31059;31060 31060 2 SDFLIQTNQSRPIEGIPVSIK Unmodified 2341.2642 0.2641602 1318 Karp_01280 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 61.287 61.622 3 0.0028067 24050 20181213_JW_Orientia_Karp_2_3 100.27 74.441 178770000 61670000 32565000 22606000 4127500 23793000 18124000 5689400 10192000 8129 1318 6955 49047;49048;49049;49050;49051;49052;49053;49054;49055 31061;31062;31063;31064;31065;31066;31067;31068;31069;31070 31068 10 SDFVENSSLPSNLR Unmodified 1563.7529 0.75290002 1098 Karp_00262 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 51.701 52.001 2 0.00075671 19983 20181213_JW_Orientia_Karp_1_3 140.78 88.055 23392000 5736200 7466500 7739500 0 0 0 2450000 0 8130 1098 6956 49056;49057;49058;49059 31071 31071 1 SDGDLSFSTPLFNNNVK Deamidation (NQ) 1854.8636 0.86357268 1287 Karp_01159 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 68.682 68.889 2 4.8223E-23 30525 20181213_JW_Orientia_Karp_1_3 219.42 169.21 25963000 4760300 3077100 4899500 2412100 3752800 2673600 2922200 1465400 8131 1287 6957 49060;49061;49062;49063;49064;49065;49066;49067 31072;31073;31074 31073 701;702 3 SDGDLSFSTPLFNNNVK Unmodified 1853.8796 0.8795571 1287 Karp_01159 yes yes 0 0 0 0 By MS/MS 1 66.028 66.127 2 0.0060711 28813 20181213_JW_Orientia_Karp_1_3 124.86 59.623 0 0 0 0 0 0 0 0 0 8132 1287 6957 49068 31075 31075 1 SDGDPVQPAVLQVHQTS Unmodified 1776.8642 0.86424139 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 51.097 51.584 2 0.00015871 17681 20181213_JW_Orientia_Karp_3_1 139.66 34.2 384600000 0 0 250490000 0 0 0 96980000 37129000 8133 345 6958 49069;49070;49071 31076;31077 31077 2 SDGIYIINLK Unmodified 1134.6285 0.62847478 71;150 C9J9K3;A0A024R2P0;P08865;Q96RS2;A6NE09;C9JQR9;A0A024R7P5 RPSA;RPSAP58;LOC388524 40S ribosomal protein SA no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.237 60.447 2 0.0003345 23086 20181213_JW_Orientia_Karp_2_2 140.35 81.757 39556000 6811800 2825300 20698000 0 5108400 4112500 0 0 8134 71;150 6959 49072;49073;49074;49075;49076;49077 31078;31079;31080;31081;31082 31081 5 SDGQLVNAGNIIVK Unmodified 1426.778 0.77799256 1155 Karp_00570 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.09 52.435 2 8.7939E-60 20259 20181213_JW_Orientia_Karp_1_3 285.83 212.6 437310000 79476000 77083000 104450000 50836000 47351000 51587000 12999000 13533000 8135 1155 6960 49078;49079;49080;49081;49082;49083;49084;49085 31083;31084;31085;31086;31087;31088;31089;31090;31091 31084 9 SDGSTVSVPMMAQTNK 2 Oxidation (M) 1683.7444 0.74438552 4 A0A024QYT5;P05121;B7ZAB0;B7Z4X6;P05121-2 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 0 2 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 34.301 34.634 2 0.002535 10689 20181213_JW_Orientia_Karp_1_1 106.79 46.618 16245000 2217000 1661600 6031100 1686000 1844600 0 2805000 0 8136 4 6961 49086;49087;49088;49089;49090;49091 31092 31092 2;3 1 SDGSTVSVPMMAQTNK Oxidation (M) 1667.7495 0.7494709 4 A0A024QYT5;P05121;B7ZAB0;B7Z4X6;P05121-2 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 40.95 41.2 2 2.3608E-13 13982 20181213_JW_Orientia_Karp_1_1 196.02 135.96 16877000 5534300 4971100 5582400 789660 0 0 0 0 8137 4 6961 49092;49093;49094;49095 31093 31093 2;3 1 SDIAIKEDIVEELLR Unmodified 1741.9462 0.9461801 1345 Karp_01521 yes yes 0 0 0 1 By MS/MS 1 68.453 68.703 3 0.0084824 30708 20181213_JW_Orientia_Karp_1_2 154.13 96.06 6423300 0 6423300 0 0 0 0 0 0 8138 1345 6962 49096 31094 31094 1 SDIGEVILVGGMTR Unmodified 1445.7548 0.75481428 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;B7Z4T3;A1XP52;H0YBG6 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 65.171 65.401 2 0.00011667 28983 20181213_JW_Orientia_Karp_1_1 160.86 123.26 30741000 11802000 7877200 7751000 863700 0 0 2446300 0 8139 721 6963 49097;49098;49099;49100;49101 31095;31096;31097 31095 3 SDIIQNSLVIPNENEHEANLDNISIATEEK Unmodified 3348.6321 0.63212277 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.963 64.164 3 1.0562E-10 28145 20181213_JW_Orientia_Karp_1_1 129.47 99.404 492320000 183440000 94374000 98371000 390200 56870000 56762000 0 2114300 8140 1245 6964 49102;49103;49104;49105;49106;49107;49108 31098;31099;31100;31101;31102;31103;31104;31105 31100 8 SDIIQNSLVIPNENEHEANLDNISIATEEK Deamidation (NQ) 3349.6161 0.61613835 1245 Karp_00915 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 2 3 1 66.172 66.356 3 1.0039E-09 29332 20181213_JW_Orientia_Karp_1_1 119.29 94.377 328110000 108610000 60851000 87040000 0 15384000 15901000 26008000 14310000 8141 1245 6964 49109;49110;49111;49112;49113;49114;49115;49116;49117;49118;49119;49120;49121;49122;49123;49124;49125;49126 31106;31107;31108;31109;31110;31111;31112;31113;31114;31115 31107 641;642;643;644 10 SDIIQNSLVIPNENEHEANLDNISIATEEK 2 Deamidation (NQ) 3350.6002 0.60015394 1245 Karp_00915 yes yes 0 2 0 0 By matching By MS/MS By matching By matching 1 1 1 1 68.137 68.414 3 0.014915 27066 20181213_JW_Orientia_Karp_2_2 51.16 34.36 30536000 0 0 11685000 0 7244700 0 5470800 6135800 8142 1245 6964 49127;49128;49129;49130 31116 31116 641;642;643;644 1 SDISDFSR Unmodified 925.41412 0.4141249 1369 Karp_01981 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 37.626 37.948 2 0.0050296 11180 20181213_JW_Orientia_Karp_2_1 122.19 59.605 205880000 59213000 61897000 28025000 10707000 33718000 3188100 9133800 0 8143 1369 6965 49131;49132;49133;49134;49135;49136;49137 31117;31118;31119;31120;31121 31120 5 SDITDEQYEEFYR Unmodified 1693.7108 0.71076044 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.607 53.965 2 1.8223E-107 21286 20181213_JW_Orientia_Karp_1_2 373.22 302.96 1195000000 317520000 270940000 332440000 102700000 70066000 64258000 29342000 7690100 8144 1251 6966 49138;49139;49140;49141;49142;49143;49144;49145 31122;31123;31124;31125;31126;31127;31128;31129 31124 8 SDKLPEEMGLLQGSSGDK Unmodified 1889.9041 0.90405729 79 B2R642;A0A024R3I5;P43121;A8K6A6 MCAM Cell surface glycoprotein MUC18 yes no 0 0 0 1 By MS/MS 1 49.605 49.804 3 0.013393 18422 20181213_JW_Orientia_Karp_1_3 127.53 86.517 36177000 0 0 36177000 0 0 0 0 0 8145 79 6967 49146 31130 31130 1 SDKPDMAEIEK Acetyl (Protein N-term);Oxidation (M) 1319.5915 0.59149692 288 Q5T4B6;A2VCK8;P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide yes no 1 0 1 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 30.904 31.214 2 0.002715 8520 20181213_JW_Orientia_Karp_1_3 120.03 36.534 177710000 113130000 0 31340000 834770 1213700 13233000 0 17961000 8146 288 6968 49147;49148;49149;49150;49151;49152 31131;31132;31133;31134 31132 208 4 SDKPDMAEIEKFDK Acetyl (Protein N-term) 1693.7869 0.78690227 288 Q5T4B6;A2VCK8;P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide yes no 1 0 0 2 By MS/MS 1 48.058 48.058 3 0.0017446 17872 20181213_JW_Orientia_Karp_1_1 132.23 80.502 31572000 31572000 0 0 0 0 0 0 0 8147 288 6969 49153 31135 31135 1 SDLEEFLK Unmodified 979.48623 0.48622722 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 55.879 56.288 2 4.3092E-06 23295 20181213_JW_Orientia_Karp_1_1 186.09 78.002 63954000 0 7511200 11868000 1847800 11212000 27433000 3828200 254230 8148 1162 6970 49154;49155;49156;49157;49158;49159;49160;49161 31136;31137;31138;31139;31140;31141 31136 6 SDLEMQYETLQEELMALK 2 Oxidation (M) 2202.0072 0.0072017319 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 73.409 73.432 2;3 3.8869E-101 33903 20181213_JW_Orientia_Karp_1_2 305.69 184.08 720470000 123200000 88259000 71535000 53200000 114710000 112350000 113100000 44121000 + 8149 1653 6971 49162;49163;49164;49165;49166;49167;49168;49169;49170;49171;49172;49173;49174 31142;31143;31144;31145;31146;31147;31148;31149;31150 31143 1274;1275 8 SDLEMQYETLQEELMALK Oxidation (M) 2186.0123 0.01228711 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 74.01 74.035 2 2.4797E-120 34038 20181213_JW_Orientia_Karp_1_2 320.48 249.76 308320000 76319000 65530000 84149000 504480 25996000 12795000 35742000 7288300 + 8150 1653 6971 49175;49176;49177;49178;49179;49180;49181;49182;49183;49184;49185;49186;49187;49188 31151;31152;31153;31154;31155;31156;31157;31158;31159 31152 1274;1275 9 SDLEMQYETLQEELMALK Unmodified 2170.0174 0.017372488 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 74.454 74.486 2 1.1668E-83 34624 20181213_JW_Orientia_Karp_1_1 293.53 187.37 103020000 28220000 17740000 36304000 416650 0 5071200 9840400 5427500 + 8151 1653 6971 49189;49190;49191;49192;49193;49194;49195;49196 31160;31161;31162;31163;31164;31165;31166 31160 7 SDLEMQYETLQEELMALKK Oxidation (M) 2314.1073 0.10725013 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 68.602 68.78 3 2.3984E-07 27430 20181213_JW_Orientia_Karp_3_2 152.25 121.95 406510000 28065000 23992000 25077000 11641000 93440000 32443000 134840000 57007000 + 8152 1653 6972 49197;49198;49199;49200;49201;49202;49203;49204;49205;49206;49207;49208;49209;49210;49211 31167;31168;31169;31170;31171;31172;31173;31174;31175;31176;31177;31178 31178 1274;1275 12 SDLEMQYETLQEELMALKK 2 Oxidation (M) 2330.1022 0.10216475 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 2 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 67.067 67.269 3 1.3383E-07 25988 20181213_JW_Orientia_Karp_3_2 158.14 115.83 237490000 16117000 27265000 17708000 0 86444000 58345000 10127000 21486000 + 8153 1653 6972 49212;49213;49214;49215;49216;49217;49218 31179;31180;31181;31182;31183;31184 31183 1274;1275 6 SDLEMQYETLQEELMALKK Unmodified 2298.1123 0.11233551 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 69.989 70.141 3 0.017453 28391 20181213_JW_Orientia_Karp_2_1 121.82 97.022 132680000 16927000 0 0 8394100 25865000 13005000 51043000 17450000 + 8154 1653 6972 49219;49220;49221;49222;49223;49224 31185;31186 31185 2 SDLESYLHR Unmodified 1118.5356 0.53563702 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 42.135 42.455 2 0.0050312 13737 20181213_JW_Orientia_Karp_2_3 104.06 48.595 55177000 15237000 13464000 10787000 2714400 3040600 2997800 6018200 917040 8155 1376 6973 49225;49226;49227;49228;49229;49230;49231;49232 31187;31188;31189 31189 3 SDLLLEGFNNYR Unmodified 1439.7045 0.70449327 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 63.103 63.203 2 1.7098E-07 26974 20181213_JW_Orientia_Karp_1_3 188.04 129.41 21928000 13791000 0 8137400 0 0 0 0 0 8156 944 6974 49233;49234 31190;31191 31191 2 SDLLLEGFNNYR Deamidation (NQ) 1440.6885 0.68850885 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 1 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 65.217 65.439 2 0.0018534 28370 20181213_JW_Orientia_Karp_1_3 133.81 97.114 13923000 4781500 0 4978400 0 0 1377300 2086600 699560 8157 944 6974 49235;49236;49237;49238;49239 31192 31192 329 1 SDLYSSGR Unmodified 883.40356 0.40356022 1663 P38159;P38159-2;B4E352;B3KRG5;H3BUY5 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 25.928 26.221 2 0.01929 5152 20181213_JW_Orientia_Karp_3_2 88.819 45.695 19622000 2321100 10775000 1376000 0 2196600 820050 0 2133300 8158 1663 6975 49240;49241;49242;49243;49244;49245 31193;31194;31195 31195 3 SDMHPSTDGLITNINDDTVAK Oxidation (M) 2259.0325 0.03250528 1178 Karp_00644 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 2 1 2 48.394 48.741 2;3 0.00021789 17869 20181213_JW_Orientia_Karp_1_2 117.29 60.474 638850000 189430000 177750000 15867000 96109000 57673000 55779000 212150 46036000 8159 1178 6976 49246;49247;49248;49249;49250;49251;49252;49253;49254;49255;49256 31196;31197;31198;31199;31200;31201;31202 31197 746 7 SDMHPSTDGLITNINDDTVAK Oxidation (M);Deamidation (NQ) 2260.0165 0.016520865 1178 Karp_00644 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 49.672 49.974 3 0.0039714 16759 20181213_JW_Orientia_Karp_3_2 88.264 40.51 138650000 36979000 24399000 27759000 16725000 15991000 10287000 0 6506400 8160 1178 6976 49257;49258;49259;49260;49261;49262;49263 31203;31204;31205;31206;31207;31208 31208 590 746 6 SDMHPSTDGLITNINDDTVAK Unmodified 2243.0376 0.037590658 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 51.143 51.393 3 0.00076969 19624 20181213_JW_Orientia_Karp_1_2 128.44 75.4 306260000 68020000 65678000 109680000 19003000 22684000 21195000 0 0 8161 1178 6976 49264;49265;49266;49267;49268;49269 31209;31210;31211;31212;31213 31210 5 SDPGEIIFTSGATEANNLAIK Unmodified 2147.0746 0.074628091 1276 Karp_01108 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 1 1 66.766 66.916 2;3 8.6288E-12 29358 20181213_JW_Orientia_Karp_1_3 227.91 160.78 108850000 43372000 15558000 27425000 5018900 8383000 9036700 59543 0 8162 1276 6977 49270;49271;49272;49273;49274;49275;49276;49277;49278;49279;49280;49281;49282 31214;31215;31216;31217;31218;31219 31216 6 SDPGEIIFTSGATEANNLAIK Deamidation (NQ) 2148.0586 0.058643676 1276 Karp_01108 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 68.21 68.425 2 0.00020108 30750 20181213_JW_Orientia_Karp_1_2 124.2 88.304 18737000 10679000 2496000 4518500 0 0 0 0 1043200 8163 1276 6977 49283;49284;49285;49286 31220;31221;31222 31221 695 3 SDPLLIGIPTSENPFK Unmodified 1726.9142 0.91415169 1829 Q53GD1;Q9UBI6 GNG12 Guanine nucleotide-binding protein subunit gamma;Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 72.493 72.562 2 3.3104E-06 33323 20181213_JW_Orientia_Karp_1_1 164.81 130.92 232260000 74093000 27644000 41536000 8539300 17261000 10320000 42312000 10553000 8164 1829 6978 49287;49288;49289;49290;49291;49292;49293;49294 31223;31224;31225;31226;31227 31223 5 SDPTSYAGYIEDLK Unmodified 1557.7199 0.71986856 766 C9JXZ1;C9JA36;D3DNF9;P54709-2;P54709 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 60.646 60.829 2 0.00086011 25527 20181213_JW_Orientia_Karp_1_3 138.63 66.095 18840000 3933500 5125400 9781500 0 0 0 0 0 8165 766 6979 49295;49296;49297 31228;31229 31229 2 SDQLLDMSSTFNK Oxidation (M) 1500.6766 0.67662354 1529 Q6FG93;O95183 VAMP5 Vesicle-associated membrane protein 5 yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 46.882 47.212 2 2.9106E-05 16739 20181213_JW_Orientia_Karp_1_3 173.76 103.07 33518000 10884000 6629600 6075200 3615200 1720100 0 554910 4039500 8166 1529 6980 49298;49299;49300;49301;49302;49303;49304 31230;31231;31232 31230 1142 3 SDQQLDCALDLMR Acetyl (Protein N-term);Oxidation (M) 1621.7076 0.70760609 467 B2R7T8;P47756-2;P47756;B1AK85 CAPZB F-actin-capping protein subunit beta yes no 1 0 1 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 66.077 66.318 2 0.0025643 29418 20181213_JW_Orientia_Karp_1_1 113.24 64.6 22900000 7751300 8355800 3722700 0 0 0 1199400 1870800 8167 467 6981 49305;49306;49307;49308;49309 31233;31234 31233 306 2 SDQQLDCALDLMR Acetyl (Protein N-term) 1605.7127 0.71269147 467 B2R7T8;P47756-2;P47756;B1AK85 CAPZB F-actin-capping protein subunit beta yes no 1 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 74.567 74.608 2 0.022858 27793 20181213_JW_Orientia_Karp_3_1 82.85 49.442 17804000 7765600 3326400 3439300 0 0 0 2225100 1047300 8168 467 6981 49310;49311;49312;49313;49314 31235 31235 1 SDQVNGVLVLSLLDK Deamidation (NQ) 1599.872 0.87195253 1868 Q6NZI2;B4DPZ5;B4DNU9;Q6NZI2-2 PTRF Polymerase I and transcript release factor yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 74.61 74.641 2 3.193E-62 30325 20181213_JW_Orientia_Karp_2_3 279.65 170.74 1543600000 471800000 171080000 540030000 54514000 143380000 109820000 38485000 14463000 8169 1868 6982 49315;49316;49317;49318;49319;49320;49321;49322;49323;49324;49325;49326;49327;49328;49329 31236;31237;31238;31239;31240;31241;31242;31243;31244;31245 31242 1180 9 SDQVNGVLVLSLLDK Unmodified 1598.8879 0.88793694 1868 Q6NZI2;B4DPZ5;B4DNU9;Q6NZI2-2 PTRF Polymerase I and transcript release factor yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 73.409 73.446 2 0.022685 30035 20181213_JW_Orientia_Karp_2_3 91.812 25.756 15675000 0 0 0 0 0 4314300 7631900 3729100 8170 1868 6982 49330;49331;49332 31246;31247 31246 2 SDQYGRVFTSWTGGGAAASR Unmodified 2072.9664 0.96641505 801 CON__P15636 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 49.742 50.011 3 0.010058 18533 20181213_JW_Orientia_Karp_1_3 78.456 46.542 398570000 82169000 58400000 140470000 60471000 0 57064000 0 0 + 8171 801 6983 49333;49334;49335;49336;49337 31248;31249;31250 31249 3 SDSFENPVLQQHFR Unmodified 1702.8063 0.80633258 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;P12956-2;F5H1I8;B4E356;Q6IC76 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 48.349 48.65 3 0.014528 17643 20181213_JW_Orientia_Karp_1_3 107.39 65.07 266330000 64582000 101000000 66840000 9603800 8634600 4253500 0 11423000 8172 48 6984 49338;49339;49340;49341;49342;49343;49344 31251;31252 31252 2 SDTLIQDVHLSDLSASLTTEPK Unmodified 2369.1962 0.19619979 1414 Karp_02240 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 1 65.579 65.836 3 3.9187E-18 28843 20181213_JW_Orientia_Karp_1_2 188.32 140.59 1036700000 228760000 198440000 86517000 37621000 192090000 83282000 200980000 9019500 8173 1414 6985 49345;49346;49347;49348;49349;49350;49351;49352;49353 31253;31254;31255;31256;31257;31258;31259;31260;31261;31262 31255 10 SDVEAIFSK Unmodified 994.49713 0.49712625 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575;D3DPI2;B4DMJ1;B4DSU6;Q6PKD2;O60812;B7ZW38;B2RXH8;G3V4M8;Q569J8;G3V2H6;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 48.628 48.938 2 0.0012362 16892 20181213_JW_Orientia_Karp_2_1 128.38 77.324 50304000 14178000 11740000 10178000 11100000 2173500 0 0 935780 8174 400;452 6986 49354;49355;49356;49357;49358;49359 31263;31264;31265;31266;31267 31266 5 SDVLELTDDNFESR Unmodified 1638.7373 0.73730954 999 H7BZJ3 PDIA3 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 59.567 59.86 2 1.2994E-58 25513 20181213_JW_Orientia_Karp_1_1 272.1 230.7 152850000 38250000 30376000 29792000 5658400 13921000 17277000 17574000 0 8175 999 6987 49360;49361;49362;49363;49364;49365;49366 31268;31269;31270 31268 3 SDVYCEVCEFLVK Unmodified 1646.732 0.73202992 22 Q53FJ5;A0A024QZQ2;C9JIZ6;Q59EN5;B1AVU8;P07602;P07602-2;P07602-3;B4DEK5;B4DRB7 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.862 68.097 2 3.1461E-05 26825 20181213_JW_Orientia_Karp_2_2 174.4 134.48 120330000 0 0 7614400 1451500 24951000 10682000 53112000 22515000 8176 22 6988 49367;49368;49369;49370;49371;49372 31271;31272;31273;31274;31275;31276 31273 6 SDYSTGGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDR Acetyl (Protein N-term) 3245.4762 0.47623125 1930 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.644 57.921 3 1.7309E-25 24203 20181213_JW_Orientia_Karp_1_1 146.38 125.62 79825000 27631000 15714000 14719000 0 10148000 6590600 0 5022800 8177 1930 6989 49373;49374;49375;49376;49377;49378 31277;31278;31279;31280;31281;31282;31283 31277 7 SEAGEATTTTTTTLPQAPTEAAAAAPQDPAPK Acetyl (Protein N-term) 3136.5048 0.50479699 204;1939 A0A024RAV4;A0A024RAQ1;P16989-2;P16989-3;P16989;Q96GD7 CSDA;YBX3 Y-box-binding protein 3 no no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 61.619 61.892 3 2.1044E-07 24141 20181213_JW_Orientia_Karp_2_1 106.43 70.488 133390000 12965000 9092600 14804000 19590000 38759000 26771000 0 11411000 8178 204;1939 6990 49379;49380;49381;49382;49383;49384;49385 31284;31285;31286;31287;31288;31289;31290;31291 31287 8 SEALPTDLPAPSAPDLTEPK Unmodified 2048.0314 0.031366293 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.07 63.329 2 7.2833E-06 24775 20181213_JW_Orientia_Karp_2_3 147.56 96.548 107710000 30362000 17382000 29641000 332380 14714000 10976000 0 4302900 8179 588 6991 49386;49387;49388;49389;49390;49391;49392 31292;31293;31294;31295;31296;31297;31298 31297 7 SEDFGVNEDLADSDAR Unmodified 1738.7282 0.72820141 1548 Q5TZZ9;P04083;B5BU38;B4DL19 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.928 51.273 2 4.2699E-63 19435 20181213_JW_Orientia_Karp_1_3 283.05 214.92 407250000 150010000 62260000 79680000 29481000 19672000 17460000 38092000 10590000 8180 1548 6992 49393;49394;49395;49396;49397;49398;49399;49400 31299;31300;31301;31302;31303;31304;31305;31306;31307 31301 9 SEDFSLPAYMDR Oxidation (M) 1445.6133 0.613295 1592 P13073;Q86WV2;H3BN72;H3BNV9;H3BNI5 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.484 53.842 2 0.026593 21119 20181213_JW_Orientia_Karp_1_3 78.513 31.326 156560000 46128000 24742000 48958000 15003000 10146000 9528900 861780 1194900 8181 1592 6993 49401;49402;49403;49404;49405;49406;49407;49408 31308;31309;31310 31310 1211 3 SEDFSLPAYMDR Unmodified 1429.6184 0.61838038 1592 P13073;Q86WV2;H3BN72;H3BNV9;H3BNI5 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.714 60.001 2 0.00069257 25032 20181213_JW_Orientia_Karp_1_3 143.5 102.51 90700000 24309000 24201000 23384000 7004500 5286300 4365900 0 2150200 8182 1592 6993 49409;49410;49411;49412;49413;49414;49415 31311;31312;31313;31314;31315;31316;31317;31318 31313 8 SEDQINSVTSDLIHAVQYHGDYR Deamidation (NQ) 2647.215 0.21503775 1395 Karp_02151 yes yes 0 1 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 2 1 2 61.595 61.902 4 0.0047569 25874 20181213_JW_Orientia_Karp_1_2 72.564 41.285 318130000 89541000 58643000 50133000 3637200 43553000 47359000 1351400 23913000 8183 1395 6994 49416;49417;49418;49419;49420;49421;49422;49423;49424;49425;49426 31319;31320;31321;31322 31319 900 4 SEDQINSVTSDLIHAVQYHGDYR Unmodified 2646.231 0.23102217 1395 Karp_02151 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 61.454 61.697 4 0.0069215 22838 20181213_JW_Orientia_Karp_3_2 73.796 45.384 589880000 110010000 160760000 135970000 0 99981000 50333000 0 32830000 8184 1395 6994 49427;49428;49429;49430;49431;49432 31323;31324;31325;31326 31326 4 SEDSIAGSGVEHSTPDTEPGK Unmodified 2098.9291 0.92908607 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 34.385 34.718 3 0.011902 10159 20181213_JW_Orientia_Karp_1_2 90.385 63.837 126280000 15646000 31393000 54443000 11927000 2397500 0 10471000 0 8185 1764 6995 49433;49434;49435;49436;49437;49438 31327 31327 1 SEDSIAGSGVEHSTPDTEPGKEESWVSIK Unmodified 3057.4051 0.40508295 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 47.222 47.567 4 0.0024 16075 20181213_JW_Orientia_Karp_3_1 46.307 22.866 85008000 14705000 13977000 9345900 15986000 13410000 9444000 2247100 5894100 8186 1764 6996 49439;49440;49441;49442;49443;49444;49445;49446 31328;31329 31329 2 SEDTAVQHGLEGLSISK Unmodified 1769.8796 0.8795571 1495 Q5T765;O14879;B4DLS7 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.822 47.234 2 1.6729E-11 16758 20181213_JW_Orientia_Karp_1_3 180.3 88.83 22926000 0 0 12224000 2726200 0 2578300 1661600 3735900 8187 1495 6997 49447;49448;49449;49450;49451;49452 31330;31331;31332;31333;31334;31335 31331 6 SEDVISEQWSMR Oxidation (M) 1481.6457 0.64565776 1214 Karp_00878 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.847 48.192 2 9.7452E-23 17825 20181213_JW_Orientia_Karp_1_1 225.93 140.07 168360000 28379000 41367000 29594000 21658000 13983000 17788000 1081300 14512000 8188 1214 6998 49453;49454;49455;49456;49457;49458;49459;49460 31336;31337;31338;31339;31340;31341;31342;31343 31336 775 8 SEDVISEQWSMR Unmodified 1465.6507 0.65074314 1214 Karp_00878 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 53.708 54.094 2 6.7537E-08 21246 20181213_JW_Orientia_Karp_1_3 192.44 139.35 57854000 0 22726000 33813000 0 0 0 0 1315200 8189 1214 6998 49461;49462;49463 31344;31345;31346 31345 3 SEDVVISISLVK Unmodified 1287.7286 0.72858275 1346 Karp_01522 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.443 63.593 2 1.8625E-11 27605 20181213_JW_Orientia_Karp_1_2 205.18 134.36 236240000 41805000 34960000 70988000 0 44733000 43757000 0 0 8190 1346 6999 49464;49465;49466;49467;49468;49469;49470 31347;31348;31349;31350;31351;31352;31353;31354 31349 8 SEEAHAEDSVMDHHFR Unmodified 1895.7857 0.78567349 832 Q63HR1;Q5VU21;D3DQ69;Q8NC51-4;Q8NC51-3;D3DQ70;Q8NC51-2;Q8NC51 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 30.042 30.311 4 0.011174 7382 20181213_JW_Orientia_Karp_2_1 64.244 46.738 27474000 8041900 8312600 4754000 4217600 2148300 0 0 0 8191 832 7000 49471;49472;49473;49474;49475 31355 31355 1 SEEETSPLVTHQNPAGPVASAPELESK Unmodified 2803.3512 0.35119688 466 B7Z9M1;B7Z561;Q9P2X2;Q53F03;B2R7N6;P43007-2;P43007 SLC1A4 Amino acid transporter;Neutral amino acid transporter A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 49.069 49.358 3 0.0001774 18758 20181213_JW_Orientia_Karp_1_1 94.838 69.43 34433000 7015000 10869000 13498000 0 0 0 0 3050700 8192 466 7001 49476;49477;49478;49479 31356;31357;31358 31356 3 SEEINIGLPSALLDK Unmodified 1597.8563 0.85630246 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.617 69.761 2 3.2781E-38 27781 20181213_JW_Orientia_Karp_2_2 255.15 167.89 301750000 62965000 39462000 48050000 17737000 33417000 12584000 71318000 16216000 8193 1262 7002 49480;49481;49482;49483;49484;49485;49486;49487 31359;31360;31361;31362;31363;31364;31365;31366;31367 31364 9 SEEITTGSAWFSFLESHNK Unmodified 2169.0015 0.0014631481 437 Q6FHL9;B1AKZ4;Q15121;Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.807 66.009 3 0.0035032 25358 20181213_JW_Orientia_Karp_3_2 89.866 63.391 94504000 16772000 9791500 10354000 0 19643000 12377000 21963000 3603600 8194 437 7003 49488;49489;49490;49491;49492;49493;49494 31368;31369;31370;31371;31372;31373;31374 31374 7 SEFEQNLSEK Unmodified 1209.5513 0.55134667 592 B4DS66;B4DKR1;Q16891-2;Q16891;H7C463;C9J406;B9A067;B4DQY2;Q16891-3;Q16891-4;B4DT20 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 34.783 35.073 2 7.2235E-05 10802 20181213_JW_Orientia_Karp_1_1 150.81 79.461 12544000 4242700 2778900 4208100 0 373770 0 940950 0 8195 592 7004 49495;49496;49497;49498;49499 31375;31376 31375 2 SEFQDIQTNNLVSDNEQHK Deamidation (NQ) 2246.0087 0.0087333705 1286 Karp_01157 yes yes 0 1 0 0 By matching By MS/MS By matching By matching 1 1 1 1 46.51 46.812 3 0.025142 16361 20181213_JW_Orientia_Karp_1_3 75.91 44.965 27610000 0 12175000 10631000 0 935070 0 0 3869000 8196 1286 7005 49500;49501;49502;49503 31377 31377 700 1 SEFVILR Unmodified 862.49125 0.49125301 1706 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By matching 1 1 51.662 51.936 2 0.02652 20523 20181213_JW_Orientia_Karp_1_1 94.006 49.475 6463500 2348700 0 0 4114800 0 0 0 0 8197 1706 7006 49504;49505 31378 31378 1 SEGSSCALESPGSVPVGICHGSLGEPQGNQGK Unmodified 3181.4404 0.44043937 816 CON__Q58D62 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 49.575 50.205 3 0.0006544 16819 20181213_JW_Orientia_Karp_3_2 65.741 42.853 8254400 0 0 0 0 0 0 5534500 2719900 + 8198 816 7007 49506;49507 31379;31380 31380 2 SEGTYCCGPVPVR Unmodified 1480.6439 0.64388362 582 B4DIT7;V9HWG3;P21980;B4DTN7;P21980-2 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.178 40.479 2 7.1155E-06 12932 20181213_JW_Orientia_Karp_1_3 178.84 136.55 152780000 37408000 21219000 52045000 0 3926900 2279400 32112000 3790800 8199 582 7008 49508;49509;49510;49511;49512;49513;49514 31381;31382;31383;31384;31385;31386;31387 31383 7 SEGVIEFTNLLFIPSSK Unmodified 1879.9931 0.99313029 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 75.287 75.306 2 6.5859E-120 35118 20181213_JW_Orientia_Karp_1_1 317.55 244.28 350480000 102060000 71635000 108520000 15296000 14890000 11144000 24519000 2424400 8200 1251 7009 49515;49516;49517;49518;49519;49520;49521;49522 31388;31389;31390;31391;31392;31393;31394;31395 31388 8 SEHKIDDVINVK Unmodified 1395.7358 0.73579339 1455 Karp_02592 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 33.519 33.853 3 0.0082292 9484 20181213_JW_Orientia_Karp_3_1 116.71 86.574 35572000 9256200 7222200 9833500 4520700 2143500 0 2596000 0 8201 1455 7010 49523;49524;49525;49526;49527;49528 31396;31397 31397 2 SEHPGLSIGDTAK Unmodified 1310.6466 0.64664404 1632 Q5U071;P26583;D6R9A6 HMGB2 High mobility group protein B2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 32.55 32.886 3 0.00040292 8170 20181213_JW_Orientia_Karp_2_2 165.35 89.188 68352000 12808000 20410000 8827700 16771000 0 2513300 7021100 0 8202 1632 7011 49529;49530;49531;49532;49533;49534;49535;49536 31398;31399;31400;31401;31402;31403;31404 31402 7 SEIDLFNIR Unmodified 1105.5768 0.57677356 1573 V9HWE0;P08758;D6RBL5;D6RBE9 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 63.41 63.56 2 2.6922E-14 27563 20181213_JW_Orientia_Karp_1_2 235.12 133.52 152110000 25234000 13562000 109810000 0 0 3498200 0 0 8203 1573 7012 49537;49538;49539;49540;49541 31405;31406;31407;31408;31409 31406 5 SEIDLLNIR Unmodified 1071.5924 0.59242362 1570 P08133-2;P08133;Q6ZP35;E7EMC6;E5RK69;B7Z582;A8K3Q7;E5RFF0;H0YC77 ANXA6 Annexin A6;Annexin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 60.342 60.629 2 0.00031147 23180 20181213_JW_Orientia_Karp_2_2 162.97 76.834 33199000 4815400 3324100 12120000 821620 5515700 5247100 0 1354900 8204 1570 7013 49542;49543;49544;49545;49546;49547;49548 31410;31411;31412;31413;31414;31415 31414 6 SEIGKIPLDK Unmodified 1098.6285 0.62847478 1104 Karp_00281 yes yes 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 37.814 38.077 3 0.035625 10806 20181213_JW_Orientia_Karp_2_2 75.652 38.588 7050000 4068600 1590100 0 471650 919700 0 0 0 8205 1104 7014 49549;49550;49551;49552 31416 31416 1 SEIMSDIYDLVNK Unmodified 1525.7334 0.73341013 1106 Karp_00284 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 69.481 69.639 2 3.4236E-34 31426 20181213_JW_Orientia_Karp_1_2 244.27 197.86 99342000 18738000 15696000 14733000 3492600 11378000 5777300 21131000 8396400 8206 1106 7015 49553;49554;49555;49556;49557;49558;49559;49560 31417;31418;31419;31420;31421;31422;31423 31418 7 SEIMSDIYDLVNK Oxidation (M) 1541.7283 0.72832476 1106 Karp_00284 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 1 1 60.031 60.281 2 0.0098092 25196 20181213_JW_Orientia_Karp_1_3 96.229 59.248 76205000 32875000 13463000 24637000 3884800 0 0 1345400 0 8207 1106 7015 49561;49562;49563;49564;49565;49566;49567 31424;31425;31426;31427 31425 625 1 SEIQNEIIDIIADIAK Deamidation (NQ) 1784.9408 0.94076037 1246 Karp_00917 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 77.373 77.368 2 4.2218E-63 36475 20181213_JW_Orientia_Karp_1_1 284.79 210.25 163280000 36428000 25412000 23550000 8663400 10660000 9744400 39265000 9554400 8208 1246 7016 49568;49569;49570;49571;49572;49573;49574;49575 31428;31429;31430;31431;31432;31433;31434;31435 31428 645 8 SEIQNEIIDIIADIAK Unmodified 1783.9567 0.95674479 1246 Karp_00917 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 77.771 77.751 2;3 2.7798E-50 31653 20181213_JW_Orientia_Karp_2_2 309.26 203.1 709770000 148270000 109780000 95857000 42056000 71462000 57646000 154140000 30560000 8209 1246 7016 49576;49577;49578;49579;49580;49581;49582;49583;49584;49585;49586;49587;49588;49589;49590 31436;31437;31438;31439;31440;31441;31442;31443;31444;31445;31446;31447;31448 31443 13 SEISENTDASGK Unmodified 1236.547 0.54698957 605 F8VQE1;B4DN52;Q53GG0;Q9UHB6-2;Q9UHB6-5;Q9UHB6;Q9UHB6-4;F8VRN8 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 0 By MS/MS 1 23.302 23.302 2 0.029529 5336 20181213_JW_Orientia_Karp_1_1 80.014 44.746 261210 261210 0 0 0 0 0 0 0 8210 605 7017 49591 31449 31449 1 SEITELR Unmodified 846.4447 0.44469675 798;791 CON__P02535-1;CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 no no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 34.533 34.817 2 0.010723 9485 20181213_JW_Orientia_Karp_2_1 133.81 57.039 204360000 55088000 71950000 35103000 0 21773000 7144400 13299000 0 + 8211 791;798 7018 49592;49593;49594;49595;49596;49597;49598 31450;31451;31452 31450 3 SELDQLRQEAEQLK Acetyl (Protein N-term) 1727.869 0.86899241 30 B1AKQ8;F6X3N5;F6UT28;B2R6K4;A0A024R056;P62873-2;P62873 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 1 0 0 1 By MS/MS By matching 1 1 63.822 63.871 2 0.00032032 28077 20181213_JW_Orientia_Karp_1_1 158.11 61.94 29139000 13405000 0 15734000 0 0 0 0 0 8212 30 7019 49599;49600 31453 31453 1 SELDYYQVLGVSR Unmodified 1527.7569 0.75692277 1073 Karp_00049 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 62.897 63.192 2 2.0252E-34 27317 20181213_JW_Orientia_Karp_1_2 284.1 200.22 404920000 104340000 42324000 113600000 17368000 69312000 34410000 444920 23119000 8213 1073 7020 49601;49602;49603;49604;49605;49606;49607;49608 31454;31455;31456;31457;31458;31459;31460;31461 31456 8 SELFIVEGDSAGGTAK Unmodified 1579.773 0.77296676 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 53.806 54.096 2 1.3826E-62 21293 20181213_JW_Orientia_Karp_1_3 274.59 207.63 294080000 112460000 70357000 102040000 0 1422500 0 7800900 0 8214 1262 7021 49609;49610;49611;49612;49613 31462;31463;31464;31465 31464 4 SELGNQSPSTSSR Unmodified 1348.6219 0.62188585 1026 J3KN66;Q5JTV8-3;Q5JTV8;H0YD16 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 By MS/MS 1 24.899 24.899 2 0.02004 6083 20181213_JW_Orientia_Karp_1_1 96.82 47.822 404590 404590 0 0 0 0 0 0 0 8215 1026 7022 49614 31466 31466 1 SELHIENLNMEADPGQYR Oxidation (M) 2130.964 0.96403178 661 B4DY23;Q54A51;P35613-3;P35613-4;P35613-2;P35613;B4DNE1 hEMMPRIN;BSG Basigin yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 46.605 46.772 3 0.00099469 16683 20181213_JW_Orientia_Karp_1_2 113.88 77.69 33933000 14302000 13238000 0 0 6392800 0 0 0 8216 661 7023 49615;49616;49617 31467 31467 407 1 SELSAYAPMVQTLEIQK Oxidation (M) 1922.9659 0.96592926 1127 Karp_00330 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 59.234 59.494 2 2.1889E-06 24607 20181213_JW_Orientia_Karp_1_3 153.81 104.62 70690000 18802000 13566000 23097000 0 5518100 4550400 0 5157100 8217 1127 7024 49618;49619;49620;49621;49622;49623;49624 31468;31469;31470;31471;31472;31473 31471 664 6 SELSAYAPMVQTLEIQK Unmodified 1906.971 0.97101464 1127 Karp_00330 yes yes 0 0 0 0 By matching By MS/MS 1 1 65.923 66.128 2 0.030483 25593 20181213_JW_Orientia_Karp_3_2 75.462 31.782 180790000 5725900 0 0 0 0 0 0 175060000 8218 1127 7024 49625;49626 31474 31474 1 SELVANNVTLPAGEQR Deamidation (NQ) 1697.8584 0.85842773 222 A0A024RBE7;P42167;G5E972;A0A024RBH7;P42167-2;Q59G12;P42167-3;P42166 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 51.852 52.152 2 0.0017026 20167 20181213_JW_Orientia_Karp_1_2 128.95 88.236 49244000 12972000 11072000 18022000 0 0 0 7179100 0 8219 222 7025 49627;49628;49629;49630 31475;31476 31476 87;88 2 SELVANNVTLPAGEQR Unmodified 1696.8744 0.87441214 222 A0A024RBE7;P42167;G5E972;A0A024RBH7;P42167-2;Q59G12;P42167-3;P42166 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 49.385 49.586 2 2.2175E-09 18496 20181213_JW_Orientia_Karp_1_2 191.01 135.45 68748000 44833000 21713000 0 0 0 2202200 0 0 8220 222 7025 49631;49632;49633 31477 31477 1 SELVTVTESFSTPK Unmodified 1523.7719 0.77190413 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.776 55.092 2 3.5808E-25 21831 20181213_JW_Orientia_Karp_1_3 231.17 153.88 92133000 22136000 20281000 31965000 3894000 5762200 7381500 0 713290 8221 274 7026 49634;49635;49636;49637;49638;49639;49640 31478;31479;31480;31481;31482;31483;31484;31485 31481 8 SELWYVPSK Unmodified 1107.5601 0.56006086 1167 Karp_00621 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 53.214 53.534 2 0.0036037 20988 20181213_JW_Orientia_Karp_1_3 110.87 56.322 278520000 0 132280000 47379000 30259000 21438000 47162000 0 0 8222 1167 7027 49641;49642;49643;49644;49645;49646 31486;31487;31488 31488 3 SEMTPEELQK Oxidation (M) 1206.5438 0.54381845 1733 P62316;K7ERG4 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 29.006 29.419 2 0.00048254 7563 20181213_JW_Orientia_Karp_1_3 132.76 52.529 6509300 0 0 2089300 0 1211200 775970 1589100 843670 8223 1733 7028 49647;49648;49649;49650;49651 31489;31490;31491;31492 31489 1360 4 SENGWIVDFLPELVSTK Deamidation (NQ) 1933.9673 0.96730947 1170 Karp_00624 yes yes 0 1 0 0 By MS/MS By matching 1 1 77.735 77.738 2 0.02401 36418 20181213_JW_Orientia_Karp_1_3 89.46 57.131 8622900 0 0 8075300 0 0 0 0 547590 8224 1170 7029 49652;49653 31493 31493 573 1 SENVVSSNQLK Unmodified 1203.6095 0.60953025 1191 Karp_00710 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 30.984 31.487 2 3.0846E-13 8681 20181213_JW_Orientia_Karp_1_2 242.49 166.02 0 0 0 0 0 0 0 0 0 8225 1191 7030 49654;49655;49656 31494;31495;31496 31494 3 SEQFINLR Unmodified 1005.5243 0.52434406 110 A0A024R5A3;A0A024R580;B2RDI5;P07384;B4DWH5 CAPN1 Calpain-1 catalytic subunit yes no 0 0 0 0 By MS/MS By matching 1 1 46.48 46.655 2 0.0098137 16998 20181213_JW_Orientia_Karp_1_1 104.44 37.268 16218000 9776400 6441500 0 0 0 0 0 0 8226 110 7031 49657;49658 31497 31497 1 SESEVEEAAAIIAQRPDNPR Unmodified 2181.0662 0.06618867 1815 Q16643;Q16643-3;Q16643-2;D6R9W4;B7Z2Z0;D6R9Q9;B3KSQ7 DBN1 Drebrin yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 53.653 53.979 3 0.028319 21166 20181213_JW_Orientia_Karp_1_3 70.167 38.757 86968000 33612000 9440700 29220000 8820800 0 4973200 0 900080 8227 1815 7032 49659;49660;49661;49662;49663;49664 31498 31498 1 SESPVTPEEK Unmodified 1101.519 0.51898391 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 26.806 27.164 2 0.0047695 7010 20181213_JW_Orientia_Karp_1_1 101.46 52.666 22166000 7541600 3673700 4117100 1152500 2142000 867690 1957000 714410 8228 1170 7033 49665;49666;49667;49668;49669;49670;49671;49672 31499 31499 1 SESSSKSSQPLASK Acetyl (Protein N-term) 1463.7104 0.71036651 247 B4DWA0;A0A024RCT9;P17096;P17096-3;E5RIT9 HMGA1;C2orf81 High mobility group protein HMG-I/HMG-Y no no 1 0 0 1 By MS/MS By matching By matching 1 1 1 24.82 24.969 2 0.0045203 6138 20181213_JW_Orientia_Karp_1_1 116.84 72.879 2839200 1778100 443420 617610 0 0 0 0 0 8229 247 7034 49673;49674;49675 31500 31500 1 SETALIGLFK Unmodified 1077.607 0.60701105 1430 Karp_02387 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 62.201 62.456 2 7.2951E-06 27271 20181213_JW_Orientia_Karp_1_1 171.53 81.834 12834000 11606000 0 0 0 0 0 0 1228200 8230 1430 7035 49676;49677;49678 31501;31502;31503 31501 3 SETAPAAPAAAPPAEK Acetyl (Protein N-term) 1519.7518 0.75183739 1606 P16403 HIST1H1C Histone H1.2 yes yes 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 1 46.613 46.898 2 2.659E-06 15956 20181213_JW_Orientia_Karp_2_1 166.7 12.95 3999900000 1373300000 1210100000 1095700000 107960000 74172000 63730000 22295000 52675000 8231 1606 7036 49679;49680;49681;49682;49683;49684;49685;49686;49687;49688;49689;49690;49691 31504;31505;31506;31507;31508;31509;31510;31511;31512;31513 31508 10 SETAPAAPAAAPPAEK Unmodified 1477.7413 0.7412727 1606 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 35.692 36.035 2 0.0016687 10683 20181213_JW_Orientia_Karp_1_3 119.21 21.256 17182000 5648600 0 7561600 0 2546800 0 1239300 185500 8232 1606 7036 49692;49693;49694;49695;49696;49697 31514;31515;31516 31515 3 SETAPAAPAAAPPAEKAPVK Acetyl (Protein N-term) 1915.0051 0.005091963 1606 P16403 HIST1H1C Histone H1.2 yes yes 1 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 42.974 43.274 2 0.00058987 15077 20181213_JW_Orientia_Karp_1_1 108.06 75.447 50179000 13477000 5297200 28189000 0 0 0 3216500 0 8233 1606 7037 49698;49699;49700;49701 31517;31518 31517 2 SETAPAAPAAPAPAEK Unmodified 1477.7413 0.7412727 291 Q4VB24;B2R984;A3R0T8;P10412;A3R0T7 HIST1H1E Histone H1.4 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 36.025 36.358 2 6.5547E-05 10948 20181213_JW_Orientia_Karp_1_2 148.96 0 226300000 73303000 57092000 78014000 6224100 0 1328200 10335000 0 8234 291 7038 49702;49703;49704;49705;49706;49707 31519;31520 31519 2 SETAPAAPAAPAPAEKTPVK Acetyl (Protein N-term) 1945.0157 0.015656649 291 Q4VB24;B2R984;A3R0T8;P10412;A3R0T7 HIST1H1E Histone H1.4 yes no 1 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 43.222 43.564 2 1.7112E-07 14738 20181213_JW_Orientia_Karp_1_3 160.46 111.72 103500000 34928000 18501000 47436000 0 0 0 2092400 543750 8235 291 7039 49708;49709;49710;49711;49712 31521;31522;31523 31523 3 SETAPAETATPAPVEK Unmodified 1597.7835 0.78353145 1604 P16401;Q14463 HIST1H1B Histone H1.5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.631 36.975 2 9.5801E-63 11183 20181213_JW_Orientia_Karp_1_3 278.35 182.01 134790000 37656000 38120000 43310000 0 0 1627500 10738000 3342900 8236 1604 7040 49713;49714;49715;49716;49717;49718 31524;31525;31526;31527;31528;31529;31530 31526 7 SETAPAETATPAPVEK Acetyl (Protein N-term) 1639.7941 0.79409613 1604 P16401;Q14463 HIST1H1B Histone H1.5 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.888 48.247 2 9.0381E-28 17505 20181213_JW_Orientia_Karp_1_2 230.59 148.64 2177200000 526980000 497270000 885060000 72524000 45316000 0 17402000 132610000 8237 1604 7040 49719;49720;49721;49722;49723;49724;49725 31531;31532;31533;31534;31535;31536;31537 31532 7 SETAPAETATPAPVEKSPAK Acetyl (Protein N-term) 2023.011 0.010965202 1604 P16401;Q14463 HIST1H1B Histone H1.5 yes no 1 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 40.908 41.238 2 2.3539E-11 13926 20181213_JW_Orientia_Karp_1_1 188.12 137.66 99061000 28350000 37527000 27541000 377900 0 0 5265900 0 8238 1604 7041 49726;49727;49728;49729;49730 31538;31539;31540;31541 31538 4 SETAPAETATPAPVEKSPAKK Acetyl (Protein N-term) 2151.1059 0.10592822 1604 P16401;Q14463 HIST1H1B Histone H1.5 yes no 1 0 0 2 By matching By MS/MS By matching 1 1 1 34.819 35.153 3 0.039251 10374 20181213_JW_Orientia_Karp_1_2 49.537 24.028 14551000 7399400 6050300 0 0 0 0 1100900 0 8239 1604 7042 49731;49732;49733 31542 31542 1 SETAPLAPTIPAPAEK Acetyl (Protein N-term) 1633.8563 0.85630246 1605 P16402 HIST1H1D Histone H1.3 yes yes 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 66.939 67.162 2 4.9383E-09 29885 20181213_JW_Orientia_Karp_1_1 193.15 147.18 1725700000 783250000 282830000 355830000 23200000 66120000 31082000 1705800 181720000 8240 1605 7043 49734;49735;49736;49737;49738;49739;49740;49741;49742 31543;31544;31545;31546;31547;31548;31549;31550;31551;31552 31543 10 SETAPLAPTIPAPAEKTPVK Acetyl (Protein N-term) 2059.1201 0.12012172 1605 P16402 HIST1H1D Histone H1.3 yes yes 1 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 58.01 58.192 2 6.1365E-05 24570 20181213_JW_Orientia_Karp_1_1 140.33 107.71 28712000 9608000 10625000 8478100 0 0 0 0 0 8241 1605 7044 49743;49744;49745 31553;31554;31555 31553 3 SEVDMLK Oxidation (M) 836.39497 0.39496937 124 V9HW65;A0A024R5Z7;P07355;P07355-2;A6NMY6;B4DNH8 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 28.578 28.828 2 0.0391 7261 20181213_JW_Orientia_Karp_1_3 79.451 16.473 15609000 5607000 4375000 4087500 1000500 0 539220 0 0 8242 124 7045 49746;49747;49748;49749;49750 31556 31556 1 SEVFFNGPAGR Deamidation (NQ) 1180.5513 0.55128709 1274 Karp_01105 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 4 4 5 1 4 50.261 50.572 2 0.00071793 19059 20181213_JW_Orientia_Karp_2_3 145.9 97.944 1576200000 358850000 375570000 262790000 266330000 106260000 169350000 4229700 32819000 8243 1274 7046 49751;49752;49753;49754;49755;49756;49757;49758;49759;49760;49761;49762;49763;49764;49765;49766;49767;49768;49769;49770;49771;49772;49773;49774;49775;49776;49777;49778;49779;49780 31557;31558;31559;31560;31561;31562;31563;31564;31565;31566;31567;31568;31569;31570;31571;31572;31573;31574;31575 31572 694 18 SEYNVVR Unmodified 865.42938 0.42938104 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 28.877 29.296 2 0.011655 7100 20181213_JW_Orientia_Karp_2_1 120.62 62.454 25973000 0 0 10301000 5199100 2435100 1519000 4606800 1911900 8244 1252 7047 49781;49782;49783;49784;49785;49786 31576;31577;31578;31579;31580;31581 31577 6 SFAGPVIIICVPSGSTPVER Unmodified 2085.0929 0.092861113 1360 Karp_01811 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.74 70.839 2 5.2696E-17 28349 20181213_JW_Orientia_Karp_2_2 192.65 129.76 192290000 43396000 40415000 39371000 0 12990000 12071000 44043000 0 8245 1360 7048 49787;49788;49789;49790;49791;49792 31582;31583;31584;31585;31586;31587 31585 6 SFDHALLDR Unmodified 1072.5302 0.53015772 1243 Karp_00910 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 1 2 39.853 40.126 2;3 0.0015533 12522 20181213_JW_Orientia_Karp_2_3 123.86 61.898 741520000 337410000 108450000 176010000 30425000 18918000 10111000 57998000 2194600 8246 1243 7049 49793;49794;49795;49796;49797;49798;49799;49800;49801;49802;49803;49804 31588;31589;31590;31591;31592;31593 31591 6 SFFGAAR Unmodified 754.37622 0.37622326 1333 Karp_01373 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.05 39.35 2 0.018801 11488 20181213_JW_Orientia_Karp_2_2 104.11 57.066 30380000 12771000 0 9844900 1861400 3108300 668630 2126300 0 8247 1333 7050 49805;49806;49807;49808;49809;49810 31594;31595;31596 31594 3 SFFGFNVESEQNK Unmodified 1531.6943 0.69432251 1390 Karp_02139 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 59.895 60.188 2 4.7591E-124 25811 20181213_JW_Orientia_Karp_1_1 340.93 275.21 456800000 90491000 147340000 82451000 39773000 40880000 42219000 13642000 0 8248 1390 7051 49811;49812;49813;49814;49815;49816;49817 31597;31598;31599;31600;31601;31602 31597 6 SFGTRPLSSGFSPEEAQQQDEEFEK Unmodified 2829.2729 0.27294656 106 A0A024R542;Q9C0C2;B3KXS7;Q9C0C2-2 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 50.552 50.819 3 0.0024431 17914 20181213_JW_Orientia_Karp_2_2 130.16 91.904 87565000 21632000 23459000 17141000 0 10567000 6051500 8714000 0 8249 106 7052 49818;49819;49820;49821;49822;49823 31603;31604;31605;31606;31607;31608 31606 6 SFGVDVIDVR Unmodified 1105.5768 0.57677356 1106 Karp_00284 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 59.401 59.651 2 5.9899E-06 25152 20181213_JW_Orientia_Karp_1_2 169.41 87.165 394870000 112480000 69446000 110020000 24288000 33835000 44795000 0 0 8250 1106 7053 49824;49825;49826;49827;49828;49829;49830 31609;31610;31611;31612;31613;31614 31610 6 SFLDSGYR Unmodified 943.43995 0.43994572 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13;B4DKC9 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS 1 45.001 45.2 2 0.023976 15588 20181213_JW_Orientia_Karp_1_3 104.44 60.32 0 0 0 0 0 0 0 0 0 8251 19 7054 49831 31615 31615 1 SFLHNPSNQATQATQVSSDNNIASNNTFSNIVK 3 Deamidation (NQ) 3550.6448 0.64481272 1129 Karp_00368 yes yes 0 3 0 0 By MS/MS 1 57.469 57.667 3 3.2677E-06 23558 20181213_JW_Orientia_Karp_1_3 95.746 72.462 0 0 0 0 0 0 0 0 0 8252 1129 7055 49832 31616 31616 520;521;1809 1 SFLSQGQVLK Unmodified 1105.6132 0.61315906 1679 Q53HH2;P48047;H7C068 ATP5O ATP synthase subunit O, mitochondrial yes no 0 0 0 0 By MS/MS 1 47.365 47.365 2 0.0045036 17415 20181213_JW_Orientia_Karp_1_1 131.11 48.355 0 0 0 0 0 0 0 0 0 8253 1679 7056 49833 31617 31617 1 SFSTALYGESDL Unmodified 1288.5823 0.58231244 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 66.747 66.88 2 0.0021623 29812 20181213_JW_Orientia_Karp_1_1 119.75 71.463 45228000 19705000 3586400 12042000 1171800 4559400 4163400 0 0 8254 1509 7057 49834;49835;49836;49837;49838;49839 31618;31619;31620 31618 3 SFSTASAITPSVSR Unmodified 1409.7151 0.71505795 799;679 B4E1T1;F8VU69;CON__P13647;P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.228 46.547 2 2.2622E-17 15567 20181213_JW_Orientia_Karp_3_1 212.09 164.9 94776000 21130000 13746000 0 0 14534000 21678000 7356100 16332000 + 8255 679;799 7058 49840;49841;49842;49843;49844;49845 31621;31622;31623;31624;31625;31626;31627 31625 7 SFTDPASNILNYELK Unmodified 1710.8465 0.84646606 1111 Karp_00293 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.626 67.828 2 2.4501E-62 23895 20181213_JW_Orientia_Karp_3_1 288.61 217.8 146020000 44401000 28900000 28476000 0 11981000 6112200 17502000 8646800 8256 1111 7059 49846;49847;49848;49849;49850;49851;49852 31628;31629;31630;31631 31630 4 SFTFVIK Unmodified 840.47454 0.47454032 1174 Karp_00628 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.227 54.493 2 0.0065787 22237 20181213_JW_Orientia_Karp_1_1 157.99 43.403 178020000 42474000 8966200 84305000 3803600 8236800 30232000 0 0 8257 1174 7060 49853;49854;49855;49856;49857;49858 31632;31633;31634;31635;31636;31637 31632 6 SFTPDHVVYAR Unmodified 1290.6357 0.63568542 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5;Q6NZI2-2;Q6NZI2-3 PTRF Polymerase I and transcript release factor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 39.146 39.416 3 0.011866 12456 20181213_JW_Orientia_Karp_1_3 77.288 61.95 633050000 342730000 102770000 150710000 0 24381000 0 12459000 0 8258 1868 7061 49859;49860;49861;49862;49863 31638;31639;31640;31641;31642 31640 4 SFTVHLNK Unmodified 944.50797 0.50796571 1437 Karp_02402 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 32.247 32.447 2 0.0093111 9605 20181213_JW_Orientia_Karp_1_1 106.04 50.016 36268000 8999100 13248000 9233100 0 4787800 0 0 0 8259 1437 7062 49864;49865;49866;49867 31643;31644;31645 31643 3 SFTVHLNK Acetyl (Protein N-term);Deamidation (NQ) 987.50255 0.50254598 1437 Karp_02402 yes yes 1 1 0 0 By MS/MS By matching By matching 1 1 1 35.546 35.833 2 0.035914 11404 20181213_JW_Orientia_Karp_1_1 73.26 16.083 11065000 8952100 0 0 0 1383200 0 0 729450 8260 1437 7062 49868;49869;49870 31646 31646 0 SFVLNLGK Unmodified 876.5069 0.50690308 1576 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 1 53.025 53.352 1;2 0.0025758 19482 20181213_JW_Orientia_Karp_2_3 159.2 90.41 614620000 89456000 40236000 141420000 100840000 84853000 149480000 7461100 880620 8261 1576 7063 49871;49872;49873;49874;49875;49876;49877;49878;49879;49880;49881;49882;49883;49884;49885 31647;31648;31649;31650;31651;31652;31653;31654;31655;31656;31657 31656 7 SFVQDDAHIFCTEDQITDETIK Unmodified 2611.1748 0.17481242 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 60.056 60.349 3 3.448E-23 25263 20181213_JW_Orientia_Karp_1_3 199.7 164.02 141760000 41497000 25282000 31904000 12214000 17973000 12627000 259240 0 8262 1376 7064 49886;49887;49888;49889;49890;49891;49892 31658;31659;31660;31661;31662;31663;31664;31665 31660 8 SFYPEEVSSMVLTK Unmodified 1615.7804 0.78036033 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 63.512 63.756 2 0.0010808 27737 20181213_JW_Orientia_Karp_1_2 134.18 78.461 112510000 36067000 22534000 24054000 2375100 12296000 8629800 149890 6403300 8263 1586 7065 49893;49894;49895;49896;49897;49898;49899;49900 31666;31667;31668 31667 3 SFYPEEVSSMVLTK Oxidation (M) 1631.7753 0.77527495 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 56.26 56.618 2 0.0016567 21339 20181213_JW_Orientia_Karp_2_1 125.82 95.206 114830000 26493000 17960000 26201000 17530000 12890000 9235800 3821800 701510 8264 1586 7065 49901;49902;49903;49904;49905;49906;49907;49908 31669;31670;31671;31672 31671 1210 4 SFYSYSLQQQQDLIEAYVTDK Unmodified 2525.1962 0.19619979 1375 Karp_02111 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 2 1 72.376 72.444 2;3 1.7141E-48 26635 20181213_JW_Orientia_Karp_3_1 249.36 197.29 2521500000 869670000 625720000 180880000 166200000 235730000 98384000 284820000 60051000 8265 1375 7066 49909;49910;49911;49912;49913;49914;49915;49916;49917;49918;49919;49920 31673;31674;31675;31676;31677;31678;31679;31680;31681 31680 9 SGALDVLQMK Acetyl (Protein N-term);Oxidation (M) 1118.5642 0.56415996 71 C9J9K3;A0A024R2P0;P08865;Q96RS2;A6NE09;C9JQR9 RPSA;RPSAP58 40S ribosomal protein SA yes no 1 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 64.219 64.4 2 2.8899E-06 25038 20181213_JW_Orientia_Karp_2_2 172.23 70.511 37425000 14973000 8469900 4906500 0 8009500 0 0 1066600 8266 71 7067 49921;49922;49923;49924;49925;49926 31682;31683;31684;31685;31686;31687 31685 78 6 SGALDVLQMK Acetyl (Protein N-term) 1102.5692 0.56924534 71 C9J9K3;A0A024R2P0;P08865;Q96RS2;A6NE09;C9JQR9 RPSA;RPSAP58 40S ribosomal protein SA yes no 1 0 0 0 By matching By matching By MS/MS 1 1 1 72.326 72.409 2 0.00166 32948 20181213_JW_Orientia_Karp_1_3 116.3 67.801 34619000 15742000 6940400 11936000 0 0 0 0 0 8267 71 7067 49927;49928;49929 31688 31688 1 SGALPAALSVIEEK Unmodified 1383.7609 0.76094551 1088 Karp_00224 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 61.439 61.689 2 0.00081168 26121 20181213_JW_Orientia_Karp_1_3 145.14 102.74 32160000 10699000 7267200 5839700 0 4556300 2893600 903990 0 8268 1088 7068 49930;49931;49932;49933;49934;49935 31689;31690;31691;31692 31690 4 SGANVHLK Unmodified 824.45045 0.45045083 1350 Karp_01526 yes yes 0 0 0 0 By MS/MS 1 17.239 17.239 2 0.037478 3140 20181213_JW_Orientia_Karp_1_1 90.37 37.018 0 0 0 0 0 0 0 0 0 8269 1350 7069 49936 31693 31693 1 SGAQASSTPLSPTR Unmodified 1358.679 0.6790068 1543;1544 P02545;P02545-3;P02545-6;Q5I6Y5;Q8N519;W5X314;P02545-2;W8QEH3;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.421 32.778 2 0.0016731 9198 20181213_JW_Orientia_Karp_1_3 141.34 100.26 369370000 71808000 79714000 96756000 24912000 23770000 18101000 36152000 18151000 8270 1543;1544 7070 49937;49938;49939;49940;49941;49942;49943;49944 31694;31695;31696;31697;31698;31699;31700;31701;31702 31697 9 SGASGPENFQVGSMPPAQQQITSGQMHR 2 Oxidation (M) 2958.3349 0.33485209 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 2 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 42.192 42.53 3 5.1079E-11 14237 20181213_JW_Orientia_Karp_1_2 138.25 109.86 35506000 0 15925000 10751000 0 2662900 0 6168100 0 8271 2016 7071 49945;49946;49947;49948 31703;31704 31703 1544;1545 2 SGASVVAIR Unmodified 858.49232 0.49231565 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;B0QZK4;Q5SWC8;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 35.06 35.422 2 0.0018792 10995 20181213_JW_Orientia_Karp_1_1 119.21 62.664 23610000 11371000 5946200 5351800 0 0 0 401220 539510 8272 1846 7072 49949;49950;49951;49952;49953 31705;31706 31705 2 SGAVGLIVVDSVAALVPK Unmodified 1693.9978 0.99782174 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 75.21 75.232 2 2.719E-32 30327 20181213_JW_Orientia_Karp_2_2 238.07 185.9 299410000 128690000 68424000 0 22883000 26359000 16652000 34274000 2133000 8273 1245 7073 49954;49955;49956;49957;49958;49959;49960 31707;31708;31709;31710;31711;31712;31713 31710 7 SGDAAIVDMVPGK Unmodified 1258.6227 0.62273747 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;Q53G89;B4E2C5;Q9H2I7;Q16577;Q2F837;Q96EB3 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 52.472 52.779 2 0.001312 21037 20181213_JW_Orientia_Karp_1_1 133.89 67.211 104160000 35088000 34069000 27156000 2673600 2204100 2671600 298760 0 8274 1746 7074 49961;49962;49963;49964;49965;49966;49967 31714 31714 1 SGDAAIVDMVPGK Oxidation (M) 1274.6177 0.61765209 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;Q53G89;B4E2C5;Q9H2I7;Q16577;Q2F837;Q96EB3 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 43.081 43.264 2 0.0011562 14658 20181213_JW_Orientia_Karp_1_2 169.65 94.276 0 0 0 0 0 0 0 0 0 8275 1746 7074 49968;49969;49970 31715;31716;31717 31716 1370 3 SGDAAIVDMVPGKPMCVESFSDYPPLGR 2 Oxidation (M) 3026.3824 0.38237913 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;Q53G89;B4E2C5;Q2F837;Q96EB3 EEF1A1;EEF1A1P5;EEF1A1L14 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 2 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 60.65 60.915 3 0.00048979 25921 20181213_JW_Orientia_Karp_1_2 80.031 61.783 45111000 12504000 10215000 15046000 0 0 0 0 7346700 8276 1746 7075 49971;49972;49973;49974 31718;31719;31720;31721;31722;31723 31721 1370;1371 6 SGDAAIVDMVPGKPMCVESFSDYPPLGR Oxidation (M) 3010.3875 0.38746451 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;Q53G89;B4E2C5;Q2F837;Q96EB3 EEF1A1;EEF1A1P5;EEF1A1L14 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 1 1 By MS/MS By MS/MS 1 1 64.296 64.546 3 0.0013512 28205 20181213_JW_Orientia_Karp_1_2 75.43 56.052 7544500 0 7544500 0 0 0 0 0 0 8277 1746 7075 49975;49976 31724;31725 31724 1370;1371 2 SGDAAIVDMVPGKPMCVESFSDYPPLGR Unmodified 2994.3925 0.39254989 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53HR1;Q53G89;B4E2C5;Q2F837;Q96EB3 EEF1A1;EEF1A1P5;EEF1A1L14 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 1 By matching By MS/MS By matching By MS/MS 1 1 1 1 69.398 69.6 3 0.030033 27505 20181213_JW_Orientia_Karp_3_2 52.926 27.415 36364000 0 8254600 11332000 0 0 0 13233000 3544500 8278 1746 7075 49977;49978;49979;49980 31726;31727 31727 2 SGEGEVSGLMR Oxidation (M) 1136.5132 0.51318702 474 B2R8R5;Q13263;Q13263-2;M0R0K9 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 1 0 By MS/MS By MS/MS 1 1 31.367 31.466 2 0.0023276 8584 20181213_JW_Orientia_Karp_1_3 114.51 70.744 8150700 4322800 0 3828000 0 0 0 0 0 8279 474 7076 49981;49982 31728;31729 31729 311 2 SGFEPASLK Unmodified 934.476 0.47599688 47 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99 MYH9 Myosin-9 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 40.059 40.308 2 0.00079715 13060 20181213_JW_Orientia_Karp_1_2 141.52 68.731 238810000 84230000 59347000 82064000 11214000 0 1956100 0 0 8280 47 7077 49983;49984;49985;49986;49987 31730 31730 1 SGFSSISVSR Unmodified 1025.5142 0.5141733 793;805 CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0 KRT6B;KRT6C Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 40.592 41.033 2 0.005627 12863 20181213_JW_Orientia_Karp_3_1 101.38 41.362 21306000 0 0 0 2930800 1850100 0 14351000 2174300 + 8281 793;805 7078 49988;49989;49990;49991 31731 31731 1 SGFSSVSVSR Unmodified 1011.4985 0.49852324 341 B4DRR0;CON__P02538;A8K2I0;P02538;B4DRU6 KRT6A Keratin, type II cytoskeletal 6A yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 35.991 36.341 2 0.0007717 10609 20181213_JW_Orientia_Karp_3_1 128.91 46.6 34653000 5718100 6647400 240580 4071900 0 0 17975000 0 + 8282 341 7079 49992;49993;49994;49995;49996;49997 31732;31733;31734 31734 3 SGFTGELYPR Unmodified 1125.5455 0.54547343 1287 Karp_01159 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 47.322 47.726 2 0.0012089 15208 20181213_JW_Orientia_Karp_3_2 120.12 69.512 24458000 0 19643000 0 0 0 1057200 0 3758200 8283 1287 7080 49998;49999;50000 31735 31735 1 SGFTYVLHEGECCGR Unmodified 1770.7454 0.74538858 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 2 42.777 43.09 2;3 0.0045188 13868 20181213_JW_Orientia_Karp_3_1 109.72 51.129 159580000 48343000 36366000 36961000 1690700 0 0 36215000 0 8284 1466;1549 7081 50001;50002;50003;50004;50005;50006;50007;50008 31736;31737;31738;31739 31739 4 SGGGFSSGSAGIINYQR Unmodified 1656.7856 0.78559713 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.319 47.664 2 2.6357E-83 17224 20181213_JW_Orientia_Karp_1_2 291.22 211.73 437290000 51560000 53664000 52657000 50181000 55051000 42083000 21653000 110440000 + 8285 995;996 7082 50009;50010;50011;50012;50013;50014;50015;50016 31740;31741;31742;31743;31744;31745;31746;31747 31741 8 SGGGFSSGSAGIINYQR Deamidation (NQ) 1657.7696 0.76961272 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 1 0 0 By matching By MS/MS 1 1 47.706 48.08 2 0.00073747 16453 20181213_JW_Orientia_Karp_2_1 130.56 87.966 8806700 0 0 3691100 5115600 0 0 0 0 + 8286 995;996 7082 50017;50018 31748 31748 358 1 SGGGGGGGFGR Unmodified 864.38383 0.38382783 799;679 B4E1T1;F8VU69;CON__P13647;P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 18.2 18.48 2 0.0040054 3306 20181213_JW_Orientia_Karp_3_1 109.48 82.785 4962200 0 1119900 759620 1116100 0 1164600 802030 0 + 8287 679;799 7083 50019;50020;50021;50022;50023 31749;31750;31751;31752 31752 4 SGGGGGGGGCGGGGGVSSLR Unmodified 1548.6699 0.66991545 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 26.824 27.236 2 6.4042E-05 5613 20181213_JW_Orientia_Karp_3_2 133.48 95.456 14155000 2215400 0 0 809560 1735800 0 7640700 1753200 + 8288 798 7084 50024;50025;50026;50027;50028;50029 31753;31754;31755;31756;31757 31757 5 SGGGGGGGGSSWGGR Unmodified 1191.5017 0.50171113 1788 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 21.235 21.537 2 0.00016632 4448 20181213_JW_Orientia_Karp_1_2 148.13 97.935 11302000 1518800 4434300 3700400 1107900 0 0 0 540350 8289 1788 7085 50030;50031;50032;50033;50034;50035 31758;31759;31760;31761;31762;31763 31759 6 SGGGGGGGLGSGGSIR Unmodified 1231.5905 0.59052614 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 2 27.522 27.86 2 1.6496E-19 5858 20181213_JW_Orientia_Karp_3_2 211.22 135 798600000 67855000 93665000 90061000 94338000 63777000 88433000 138680000 161790000 + 8290 1653 7086 50036;50037;50038;50039;50040;50041;50042;50043;50044;50045;50046;50047;50048;50049 31764;31765;31766;31767;31768;31769;31770 31770 7 SGGGGLMEEMNAMLAR 3 Oxidation (M) 1670.7062 0.70622588 37 A0A024R0V4;P50552;K7EM16 VASP Vasodilator-stimulated phosphoprotein yes no 0 0 3 0 By MS/MS 1 35.728 36.38 2 0.001303 10643 20181213_JW_Orientia_Karp_3_1 115.33 76.522 0 0 0 0 0 0 0 0 0 8291 37 7087 50050 31771 31771 21;22;23 1 SGGGVGGGHHGGMGGMDF 2 Oxidation (M) 1604.6096 0.60962338 1296 Karp_01187 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 7 3 2 5 3 5 5 24.833 25.185 2;3 0.0026312 4731 20181213_JW_Orientia_Karp_1_3 99.069 78.963 1033300000 534200000 220340000 34514000 61714000 25421000 8451200 79166000 69503000 8292 1296 7088 50051;50052;50053;50054;50055;50056;50057;50058;50059;50060;50061;50062;50063;50064;50065;50066;50067;50068;50069;50070;50071;50072;50073;50074;50075;50076;50077;50078;50079;50080;50081;50082;50083;50084 31772;31773;31774;31775;31776;31777;31778;31779;31780;31781;31782;31783;31784;31785;31786;31787 31778 851;852 13 SGGGVGGGHHGGMGGMDF Oxidation (M) 1588.6147 0.61470876 1296 Karp_01187 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 3 1 29.055 29.39 2;3 0.0029634 6978 20181213_JW_Orientia_Karp_2_3 101.72 88.319 3707100000 1770900000 557780000 748570000 269710000 107520000 84340000 168240000 0 8293 1296 7088 50085;50086;50087;50088;50089;50090;50091;50092;50093;50094;50095;50096 31788;31789;31790;31791;31792;31793;31794;31795;31796;31797 31795 851;852 10 SGGGVGGGHHGGMGGMDF Unmodified 1572.6198 0.61979413 1296 Karp_01187 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 37.389 37.711 3 0.020991 11597 20181213_JW_Orientia_Karp_1_3 59.345 31.672 1772400000 631320000 520360000 485420000 36284000 67574000 3082200 28383000 0 8294 1296 7088 50097;50098;50099;50100;50101;50102;50103 31798;31799;31800;31801 31798 4 SGGMSNELNNIISR Oxidation (M) 1506.7097 0.709655 54 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396-2;P53396;Q8N9C4;B4E3P0 ACLY;ACLY variant protein ATP-citrate synthase yes no 0 0 1 0 By MS/MS 1 45.602 45.952 2 0.020761 16229 20181213_JW_Orientia_Karp_1_2 101.56 44.406 0 0 0 0 0 0 0 0 0 8295 54 7089 50104 31802 31802 61 1 SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK Deamidation (NQ) 3012.2143 0.21426248 147;922 A0A024R7C7;Q12906;K7ELV3;F4ZW66;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 no no 0 1 0 0 By MS/MS By matching 1 1 34.358 34.783 3 9.3274E-06 10122 20181213_JW_Orientia_Karp_1_3 83.479 69.763 13421000 0 0 10687000 0 0 0 2733900 0 8296 147;922 7090 50105;50106 31803 31803 59 1 SGGTALHVAAAK Unmodified 1081.588 0.58800695 482 B2RAH5;O14974-5;O14974-4;O14974-3;O14974;F8VZN8;A0A024RBF1;O14974-2;F8VW28;H0YHL8 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 22.76 23.175 2 0.014701 4112 20181213_JW_Orientia_Karp_2_2 90.15 44.178 4461300 0 0 0 1220100 1368900 1503900 0 368390 8297 482 7091 50107;50108;50109;50110 31804;31805 31804 2 SGIALMEIVSEPDISSPMQAAEYIK Unmodified 2678.3183 0.31830554 1317 Karp_01279 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 74.766 74.798 3 8.6974E-07 34804 20181213_JW_Orientia_Karp_1_2 127.9 103.17 92906000 36124000 10725000 24279000 498650 3562600 3406000 11961000 2349900 8298 1317 7092 50111;50112;50113;50114;50115;50116;50117;50118 31806;31807;31808;31809;31810;31811 31809 6 SGIALMEIVSEPDISSPMQAAEYIK 2 Oxidation (M) 2710.3081 0.30813478 1317 Karp_01279 yes yes 0 0 2 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 70.049 70.207 3 0.0019322 31523 20181213_JW_Orientia_Karp_1_3 74.742 40.587 26502000 4871500 0 4251300 2325700 0 1916100 10530000 2608100 8299 1317 7092 50119;50120;50121;50122;50123;50124;50125 31812;31813;31814;31815 31812 872;873 3 SGIALMEIVSEPDISSPMQAAEYIK Oxidation (M) 2694.3132 0.31322016 1317 Karp_01279 yes yes 0 0 1 0 By MS/MS By matching 1 1 73.374 73.423 3 0.00087457 29868 20181213_JW_Orientia_Karp_2_1 95.624 53.719 18520000 0 0 0 9714000 8805500 0 0 0 8300 1317 7092 50126;50127 31816 31816 872;873 1 SGKDDLDYNSLTTHYNQLQNLYHADK Unmodified 3052.4163 0.41625675 1162 Karp_00605 yes yes 0 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 52.08 52.388 4 0.00061624 20518 20181213_JW_Orientia_Karp_1_2 80.477 56.987 84203000 25843000 10778000 16313000 9669600 9779500 10284000 1536500 0 8301 1162 7093 50128;50129;50130;50131;50132;50133;50134 31817;31818 31817 2 SGLTLHTLNSVIEK Unmodified 1510.8355 0.83550744 1160 Karp_00595 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 49.013 49.263 3 0.0056459 18227 20181213_JW_Orientia_Karp_1_2 118.73 75.921 50990000 10311000 21322000 10896000 6066700 2395400 0 0 0 8302 1160 7094 50135;50136;50137;50138;50139 31819;31820;31821 31820 3 SGNQFVLYR Unmodified 1082.5509 0.55089316 788 CON__P01045-1;CON__Q2KJ62;CON__P01044-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 45.393 45.663 2 0.00074282 16041 20181213_JW_Orientia_Karp_1_2 150.36 73.587 22351000 7638500 9430300 4396600 0 638360 0 247290 0 + 8303 788 7095 50140;50141;50142;50143;50144 31822;31823;31824 31823 3 SGNTAENLVGLLER Unmodified 1471.7631 0.76307078 1131 Karp_00376 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 62.15 62.426 2 4.8615E-47 24329 20181213_JW_Orientia_Karp_2_3 270.93 191.44 339580000 100520000 125740000 46631000 4944100 0 49733000 0 12008000 8304 1131 7096 50145;50146;50147;50148;50149;50150 31825;31826;31827;31828;31829;31830 31829 6 SGPFGQIFRPDNFVFGQSGAGNNWAK Unmodified 2797.3361 0.33609636 1566;1747;1550;602 P04350;B4DJ43;B4DE77;M0R278;M0QY85;M0QZL7;M0R1I1;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DQN9;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B4DMJ5 TUBB4A;TUBB;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.413 69.557 3 9.086E-67 30991 20181213_JW_Orientia_Karp_1_3 256.12 219.03 722000000 221490000 91599000 142130000 0 41853000 28621000 144430000 51880000 8305 1550;1566;1747;602 7097 50151;50152;50153;50154;50155;50156;50157 31831;31832;31833;31834;31835;31836;31837;31838;31839 31834 9 SGPFGQIFRPDNFVFGQSGAGNNWAK Deamidation (NQ) 2798.3201 0.32011195 1566;1747;1550;602 P04350;B4DJ43;B4DE77;M0R278;M0QY85;M0QZL7;M0R1I1;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DQN9;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B4DMJ5 TUBB4A;TUBB;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 1 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 72.04 72.127 3 1.8616E-53 29091 20181213_JW_Orientia_Karp_3_2 227.43 191.44 809570000 184710000 0 297020000 57060000 82032000 39714000 110060000 38984000 8306 1550;1566;1747;602 7097 50158;50159;50160;50161;50162;50163;50164 31840;31841;31842;31843;31844 31844 215;216 5 SGPNIYELR Unmodified 1047.5349 0.53490874 1006 H7C333;O75323;C9J7B1;C9K068;O75323-2 GBAS Protein NipSnap homolog 2 yes no 0 0 0 0 By MS/MS 1 44.95 45.148 2 0.010936 15558 20181213_JW_Orientia_Karp_1_3 92.239 33.643 18247000 0 0 18247000 0 0 0 0 0 8307 1006 7098 50165 31845 31845 1 SGQGAFGNMCR Oxidation (M) 1199.4812 0.48117539 1660 Q59GY2;P36578;B4DMJ6;H3BU31;B4DFI6;Q53G74;B4DP82;H3BTP7 RPL4 60S ribosomal protein L4 yes no 0 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 23.72 24.122 2 0.0038507 4316 20181213_JW_Orientia_Karp_3_2 106.88 91.238 24982000 0 5603300 6333300 764400 747020 0 4779000 6754700 8308 1660 7099 50166;50167;50168;50169;50170;50171 31846 31846 1282 1 SGSGQMFNQLQEALR Oxidation (M);4 Deamidation (NQ) 1684.725 0.72503029 1894 Q86UQ4-6;Q86UQ4-7;Q86UQ4-5;Q86UQ4-3;Q86UQ4;Q86UQ4-4 ABCA13 ATP-binding cassette sub-family A member 13 yes no 0 4 1 0 By matching By MS/MS By matching 1 1 1 41.095 41.361 3 0.035348 12907 20181213_JW_Orientia_Karp_2_1 41.621 11.983 15790000 0 0 5935000 6537500 3317600 0 0 0 8309 1894 7100 50172;50173;50174 31847 31847 2030;2031;2032 1 SGSGTMNLGGSLTR Oxidation (M) 1352.6354 0.63542742 467 B2R7T8;P47756-2;B1AK87;B1AK88;B4DWA6;P47756;B1AK85 CAPZB F-actin-capping protein subunit beta yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 34.344 34.677 2 0.00063561 10117 20181213_JW_Orientia_Karp_1_3 140.63 60.722 58767000 16040000 16912000 16917000 2213800 2126900 0 4557100 0 8310 467 7101 50175;50176;50177;50178;50179;50180 31848;31849;31850;31851;31852 31850 307 5 SGSIVYITDSIK Unmodified 1281.6816 0.68163256 1242 Karp_00909 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.776 54.135 2 2.606E-11 19720 20181213_JW_Orientia_Karp_2_1 203.02 134.18 305520000 136020000 0 82065000 23740000 26490000 30511000 4457400 2242700 8311 1242 7102 50181;50182;50183;50184;50185;50186;50187;50188 31853;31854;31855;31856;31857;31858;31859;31860;31861 31856 9 SGSIVYITDSIKK Unmodified 1409.7766 0.77659558 1242 Karp_00909 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 44.332 44.644 3 0.0337 15283 20181213_JW_Orientia_Karp_1_3 79.283 63.697 32052000 0 19121000 9298800 2049800 0 1582200 0 0 8312 1242 7103 50189;50190;50191;50192 31862;31863 31863 2 SGSMDPSGAHPSVR Oxidation (M) 1399.615 0.61502633 465 B2R7B5;Q07666-3;Q07666;B4DDX2;Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 2 1 1 1 1 21.6 21.856 3 0.010817 4683 20181213_JW_Orientia_Karp_1_1 92.151 62.936 41685000 5834300 12157000 12347000 2643700 1724000 2371000 4607800 0 8313 465 7104 50193;50194;50195;50196;50197;50198;50199;50200 31864;31865;31866;31867 31864 305 4 SGSMDPSGAHPSVR Unmodified 1383.6201 0.62011171 465 B2R7B5;Q07666-3;Q07666;B4DDX2;Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 26.809 27.187 3 0.038863 6580 20181213_JW_Orientia_Karp_1_2 47.227 26.387 23286000 0 19803000 2921600 0 0 217100 0 343930 8314 465 7104 50201;50202;50203;50204 31868 31868 1 SGSTQIYIMNDQGGNIK Unmodified 1824.8676 0.8676122 1065 Karp_00013 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 48.161 48.488 2 2.4146E-06 18165 20181213_JW_Orientia_Karp_1_1 154.72 109.36 25971000 8015600 9444700 6292200 0 986120 0 70637 1161200 8315 1065 7105 50205;50206;50207;50208;50209;50210 31869;31870;31871 31869 3 SGSTQIYIMNDQGGNIK Oxidation (M) 1840.8625 0.86252683 1065 Karp_00013 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 41.328 41.649 2 1.7276E-12 13627 20181213_JW_Orientia_Karp_1_3 193.45 149.95 17052000 0 5903800 5103600 0 1272200 1566700 3205400 0 8316 1065 7105 50211;50212;50213;50214;50215 31872;31873 31872 583 2 SGTLACTGSLVNNTANDR Unmodified 1849.8588 0.85883843 801 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 6 3 4 3 4 43.748 44.067 2;3 3.4779E-120 13962 20181213_JW_Orientia_Karp_2_3 318.46 184.16 99784000000 16426000000 21045000000 18850000000 10289000000 2023000000 19165000000 11870000000 115750000 + 8317 801 7106 50216;50217;50218;50219;50220;50221;50222;50223;50224;50225;50226;50227;50228;50229;50230;50231;50232;50233;50234;50235;50236;50237;50238;50239;50240;50241;50242;50243;50244;50245;50246;50247;50248;50249;50250 31874;31875;31876;31877;31878;31879;31880;31881;31882;31883;31884;31885;31886;31887;31888;31889;31890;31891;31892;31893;31894;31895 31889 21 SGTLACTGSLVNNTANDR Deamidation (NQ) 1850.8429 0.84285402 801 CON__P15636 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 6 8 5 3 5 9 4 45.915 46.222 2;3 3.8357E-99 15066 20181213_JW_Orientia_Karp_3_1 319.64 223.3 24736000000 7134200000 5564900000 5426300000 150160000 22273000 3296700000 1340400000 1800900000 + 8318 801 7106 50251;50252;50253;50254;50255;50256;50257;50258;50259;50260;50261;50262;50263;50264;50265;50266;50267;50268;50269;50270;50271;50272;50273;50274;50275;50276;50277;50278;50279;50280;50281;50282;50283;50284;50285;50286;50287;50288;50289;50290;50291;50292;50293;50294;50295;50296;50297 31896;31897;31898;31899;31900;31901;31902;31903;31904;31905;31906;31907;31908;31909;31910;31911;31912;31913;31914;31915;31916;31917;31918;31919;31920;31921;31922;31923;31924;31925;31926;31927;31928;31929;31930 31927 290;291;292 33 SGTLACTGSLVNNTANDR 2 Deamidation (NQ) 1851.8269 0.8268696 801 CON__P15636 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 5 5 6 5 5 5 47.433 47.766 2;3 1.8604E-83 16154 20181213_JW_Orientia_Karp_2_2 295.44 220.48 12211000000 2203700000 1750600000 1493700000 1867900000 1647500000 1401900000 396390000 1449000000 + 8319 801 7106 50298;50299;50300;50301;50302;50303;50304;50305;50306;50307;50308;50309;50310;50311;50312;50313;50314;50315;50316;50317;50318;50319;50320;50321;50322;50323;50324;50325;50326;50327;50328;50329;50330;50331;50332;50333;50334;50335;50336;50337;50338;50339;50340 31931;31932;31933;31934;31935;31936;31937;31938;31939;31940;31941;31942;31943;31944;31945;31946;31947;31948;31949;31950;31951;31952;31953;31954;31955;31956;31957;31958;31959;31960;31961;31962 31945 290;291;292 30 SGTLACTGSLVNNTANDRK Unmodified 1977.9538 0.95380145 801 CON__P15636 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 4 2 4 5 1 3 2 35.812 36.17 2;3 0.00051452 11357 20181213_JW_Orientia_Karp_1_1 111.64 71.457 151400000000 41175000000 31745000000 30749000000 155650000 26950000000 10772000000 1198300000 8651700000 + 8320 801 7107 50341;50342;50343;50344;50345;50346;50347;50348;50349;50350;50351;50352;50353;50354;50355;50356;50357;50358;50359;50360;50361;50362;50363;50364 31963;31964;31965;31966;31967;31968;31969;31970;31971;31972 31963 9 SGTLACTGSLVNNTANDRK Deamidation (NQ) 1978.9378 0.93781703 801 CON__P15636 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 7 4 7 6 6 3 2 39.272 39.565 2;3 3.7401E-164 11297 20181213_JW_Orientia_Karp_3_2 358.73 279.08 80407000000 27314000000 15837000000 33831000000 2002600000 495220000 400730000 471410000 54863000 + 8321 801 7107 50365;50366;50367;50368;50369;50370;50371;50372;50373;50374;50375;50376;50377;50378;50379;50380;50381;50382;50383;50384;50385;50386;50387;50388;50389;50390;50391;50392;50393;50394;50395;50396;50397;50398;50399;50400;50401;50402;50403;50404;50405;50406;50407 31973;31974;31975;31976;31977;31978;31979;31980;31981;31982;31983;31984;31985;31986;31987;31988;31989;31990;31991;31992 31992 290;291;292 19 SGTLACTGSLVNNTANDRK 2 Deamidation (NQ) 1979.9218 0.92183262 801 CON__P15636 yes yes 0 2 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 9 8 7 10 8 6 3 40.464 40.748 2;3 3.28E-273 12833 20181213_JW_Orientia_Karp_2_3 411.61 315.55 42923000000 6273500000 6317800000 11891000000 6069600000 3990900000 1519600000 6817500000 42836000 + 8322 801 7107 50408;50409;50410;50411;50412;50413;50414;50415;50416;50417;50418;50419;50420;50421;50422;50423;50424;50425;50426;50427;50428;50429;50430;50431;50432;50433;50434;50435;50436;50437;50438;50439;50440;50441;50442;50443;50444;50445;50446;50447;50448;50449;50450;50451;50452;50453;50454;50455;50456;50457;50458;50459;50460;50461;50462;50463;50464;50465;50466;50467 31993;31994;31995;31996;31997;31998;31999;32000;32001;32002;32003;32004;32005;32006;32007;32008;32009;32010;32011;32012;32013;32014;32015;32016;32017;32018;32019;32020;32021;32022;32023 32018 290;291;292 28 SGTLACTGSLVNNTANDRK 3 Deamidation (NQ) 1980.9058 0.9058482 801 CON__P15636 yes yes 0 3 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 2 2 2 3 42.625 42.919 2;3 1.0999E-32 13375 20181213_JW_Orientia_Karp_3_1 233.97 162.08 1032400000 401860000 338650000 57534000 89098000 14552000 51575000 79162000 0 + 8323 801 7107 50468;50469;50470;50471;50472;50473;50474;50475;50476;50477;50478;50479;50480;50481;50482;50483;50484;50485 32024;32025;32026;32027;32028;32029 32029 290;291;292 5 SGTLAQFLYSDK Unmodified 1328.6612 0.66123147 1420 Karp_02261 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 57.398 57.686 2 0.008127 21660 20181213_JW_Orientia_Karp_2_2 100.82 62.252 21281000 14395000 0 0 0 4795200 0 0 2091200 8324 1420 7108 50486;50487;50488 32030 32030 1 SGTSEFLNK Unmodified 981.47673 0.47672516 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;Q96GW1 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 33.469 33.669 2 0.00076981 9664 20181213_JW_Orientia_Karp_1_2 149.57 79.574 106550000 36948000 33877000 34001000 0 1724800 0 0 0 8325 1598 7109 50489;50490;50491;50492 32031;32032 32032 2 SGTVPTPLVVGFGEAAR Unmodified 1656.8835 0.88352026 1276 Karp_01108 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 64.007 64.24 2 3.2592E-09 24949 20181213_JW_Orientia_Karp_2_2 177.36 118.66 576350000 111650000 269170000 81178000 14136000 60024000 21762000 4469600 13963000 8326 1276 7110 50493;50494;50495;50496;50497;50498;50499;50500 32033;32034;32035;32036;32037;32038;32039 32036 7 SGVGNIFIK Unmodified 933.52837 0.5283668 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E5RGH3;Q4VXU2;E5RH24;E5RJB9;Q4VY17;B4DM75;Q96DU9-2;Q96DU9 PABPC1;PABPC1L;PABPC5 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.665 48.915 2 0.00081465 18065 20181213_JW_Orientia_Karp_1_2 136.27 40.527 40590000 10875000 7046400 6777000 8784900 2818000 4288600 0 0 8327 179 7111 50501;50502;50503;50504;50505;50506 32040;32041;32042;32043;32044;32045 32041 6 SGVHATVAAISSIVESK Unmodified 1654.889 0.88899957 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 51.199 51.532 2;3 2.6804E-07 19782 20181213_JW_Orientia_Karp_1_3 161.82 116.54 415850000 76350000 114210000 38098000 74343000 60792000 41700000 6388900 3972800 8328 1193 7112 50507;50508;50509;50510;50511;50512;50513;50514;50515;50516;50517;50518;50519;50520 32046;32047;32048;32049;32050;32051;32052;32053;32054;32055 32050 10 SGVIQSMEPR Unmodified 1102.5441 0.54409322 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.685 39.935 2 0.0029626 13370 20181213_JW_Orientia_Karp_1_1 110.54 28.3 404660000 159120000 107990000 79857000 48322000 9368300 0 0 0 8329 1094 7113 50521;50522;50523;50524;50525;50526;50527 32056;32057;32058;32059;32060;32061;32062 32056 7 SGVIQSMEPR Oxidation (M) 1118.539 0.53900784 1094 Karp_00243 yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 2 2 28.52 28.88 2 4.3565E-06 6975 20181213_JW_Orientia_Karp_2_1 171.33 22.386 424410000 159500000 72628000 63589000 40214000 17372000 17804000 52339000 963230 8330 1094 7113 50528;50529;50530;50531;50532;50533;50534;50535;50536;50537;50538;50539 32063;32064;32065;32066;32067;32068 32064 610 6 SGVLDTLTK Unmodified 932.51786 0.51786169 1864 Q6IB68;Q99417 MYCBP C-Myc-binding protein yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 47.98 48.24 2 0.038793 16698 20181213_JW_Orientia_Karp_2_3 72.879 28.762 22103000 3698700 6487000 0 5623900 1649300 4644100 0 0 8331 1864 7114 50540;50541;50542;50543;50544 32069 32069 1 SGVLSVSSGAAAHR Unmodified 1297.6739 0.67386184 733 B7Z938;Q5D044;H0UI49;Q16363-2;Q16363;H0Y351;H0YAQ5;Q05CF9;E5RFQ2 LAMA4 Laminin subunit alpha-4 yes no 0 0 0 0 By matching By MS/MS 1 1 30.739 30.913 3 0.040968 8365 20181213_JW_Orientia_Karp_1_2 45.347 8.3652 13491000 12255000 1235800 0 0 0 0 0 0 8332 733 7115 50545;50546 32070 32070 1 SGVSLAALK Unmodified 844.50182 0.5018177 1605;1606;291 P16402;Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16403 HIST1H1D;HIST1H1E;HIST1H1C Histone H1.3;Histone H1.4;Histone H1.2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 2 1 2 1 43.118 43.407 2 0.00078503 13785 20181213_JW_Orientia_Karp_2_2 145.16 45.781 4165400000 1700000000 1581900000 660310000 0 29395000 345380 181700000 11813000 8333 1605;291;1606 7116 50547;50548;50549;50550;50551;50552;50553;50554;50555;50556;50557;50558;50559 32071;32072;32073;32074;32075;32076 32075 6 SGVSLAALKK Unmodified 972.59678 0.59678072 1605;1606;291 P16402;Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16403 HIST1H1D;HIST1H1E;HIST1H1C Histone H1.3;Histone H1.4;Histone H1.2 no no 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 33.345 33.718 2 0.00022898 8600 20181213_JW_Orientia_Karp_3_2 155.58 81.33 284470000 85495000 74107000 96409000 8376900 3341000 0 14238000 2499100 8334 1605;291;1606 7117 50560;50561;50562;50563;50564;50565;50566 32077;32078;32079;32080 32080 4 SGVVDSSSLHESQPLTLQK Unmodified 2011.0222 0.02219859 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 2 44.999 45.389 2;3 1.1872E-12 14949 20181213_JW_Orientia_Karp_3_1 188.12 91.304 615740000 137070000 149240000 228400000 0 0 46092000 30081000 24851000 8335 1428 7118 50567;50568;50569;50570;50571;50572;50573;50574 32081;32082;32083;32084;32085;32086 32086 6 SGVYQHVTGEMMGGHAIR Oxidation (M) 1944.8934 0.8934498 77;1867 B4DL49;A0A024R374;P07858;B4DMY4;B3KUJ8;A8K2H4;R4GMQ5;Q6LAF9 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain no no 0 0 1 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 33.625 34.018 3 0.0012695 9774 20181213_JW_Orientia_Karp_1_3 111.01 76.395 36929000 10319000 8514700 11029000 3833900 0 0 2226900 1005600 8336 77;1867 7119 50575;50576;50577;50578;50579;50580 32087 32087 82 1 SGYLLPDTK Unmodified 992.51786 0.51786169 1598 Q5CAQ5;V9HWP2;P14625;B4DU71;B4DHT9;H0YIV0 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.811 45.085 2 0.011268 15726 20181213_JW_Orientia_Karp_1_2 91.584 47.467 103630000 0 50149000 53483000 0 0 0 0 0 8337 1598 7120 50581;50582;50583 32088;32089;32090 32089 3 SGYQDFMHAVELNGAVLPSK Oxidation (M);Deamidation (NQ) 2179.0256 0.025569409 1178 Karp_00644 yes yes 0 1 1 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 2 1 1 58.522 58.885 3 0.0026192 24542 20181213_JW_Orientia_Karp_1_2 96.391 48.338 84577000 0 27130000 19716000 8135600 5796000 18823000 214080 4761800 8338 1178 7121 50584;50585;50586;50587;50588;50589;50590;50591;50592 32091;32092;32093 32091 591 747 2 SGYQDFMHAVELNGAVLPSK Deamidation (NQ) 2163.0307 0.030654787 1178 Karp_00644 yes yes 0 1 0 0 By matching By MS/MS By matching 1 1 1 66.857 67.023 3 4.808E-13 29419 20181213_JW_Orientia_Karp_1_3 179.84 129.05 23574000 0 4596000 15126000 0 0 3852600 0 0 8339 1178 7121 50593;50594;50595 32094 32094 591 1 SHCIAEVEK Unmodified 1071.5019 0.50189405 792 CON__P02769 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.744 22.089 2 0.00078503 3647 20181213_JW_Orientia_Karp_2_2 145.16 96.059 40591000 2471200 3097300 2595800 4688300 4458800 4975600 11674000 6630100 + 8340 792 7122 50596;50597;50598;50599;50600;50601;50602;50603 32095;32096;32097;32098;32099;32100;32101 32098 7 SHEAEVLK Unmodified 911.47125 0.47124585 282 A2A2D0;B5BU83;P16949;P16949-2;Q96CE4 STMN1 Stathmin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 18.763 19.043 2 0.0014406 3448 20181213_JW_Orientia_Karp_2_3 172.03 92.58 9058700 2854800 0 0 2361400 552340 2354400 935840 0 8341 282 7123 50604;50605;50606;50607;50608 32102;32103;32104;32105 32104 4 SHEFDVPK Unmodified 957.4556 0.45559579 1241 Karp_00908 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 29.488 29.888 2 0.0041971 7410 20181213_JW_Orientia_Karp_3_1 139.68 90.919 30935000 19669000 0 0 5362700 0 0 5903100 0 8342 1241 7124 50609;50610;50611;50612;50613;50614 32106;32107;32108;32109;32110;32111 32111 6 SHILGMEK Oxidation (M) 929.46405 0.46405199 1332 Karp_01370 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 17.931 18.276 2 0.0058265 3295 20181213_JW_Orientia_Karp_2_3 113.41 73.344 78227000 28399000 16782000 9289200 6393600 0 4340300 4337000 8686000 8343 1332 7125 50615;50616;50617;50618;50619;50620;50621 32112;32113;32114;32115;32116 32115 888 5 SHLFGWESEEAVEAAR Unmodified 1816.838 0.83802663 1276 Karp_01108 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 50.52 50.878 2;3 0.00012137 17244 20181213_JW_Orientia_Karp_3_2 147.18 108.55 719720000 134410000 180330000 168060000 110170000 38582000 58363000 23655000 6139300 8344 1276 7126 50622;50623;50624;50625;50626;50627;50628;50629;50630;50631;50632;50633;50634;50635;50636 32117;32118;32119;32120;32121;32122;32123;32124 32124 8 SHMMDVQGSTQDSAIK 2 Oxidation (M) 1765.7611 0.76109822 1594 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 2 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 23.663 24.095 3 0.0010932 4402 20181213_JW_Orientia_Karp_3_2 116.79 52.136 10606000 0 0 2281000 2103300 2134400 0 2515400 1571900 8345 1594 7127 50637;50638;50639;50640;50641 32125;32126;32127;32128 32128 1215;1216 4 SHNFITLDNNSLPR Deamidation (NQ) 1627.7954 0.79543354 1390 Karp_02139 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 50.164 50.468 3 1.3384E-05 19173 20181213_JW_Orientia_Karp_1_1 175.6 103.28 221440000 8930700 65605000 37539000 51060000 22910000 28791000 6606100 0 8346 1390 7128 50642;50643;50644;50645;50646;50647;50648;50649;50650;50651;50652;50653 32129;32130;32131;32132;32133;32134;32135;32136 32129 881;882 7 SHNFITLDNNSLPR 2 Deamidation (NQ) 1628.7794 0.77944912 1390 Karp_02139 yes yes 0 2 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 1 2 52.951 53.219 3 0.012442 21540 20181213_JW_Orientia_Karp_1_1 81.789 46.713 32877000 8603400 0 9828100 6461400 1134900 6848700 0 0 8347 1390 7128 50654;50655;50656;50657;50658;50659;50660;50661 32137;32138;32139 32137 881;882 2 SHNFITLDNNSLPR Unmodified 1626.8114 0.81141795 1390 Karp_02139 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 1 1 2 47.9 48.213 2;3 9.9367E-05 16383 20181213_JW_Orientia_Karp_2_2 195.94 113.46 304370000 56886000 62207000 79326000 33167000 27553000 19120000 1193700 24913000 8348 1390 7128 50662;50663;50664;50665;50666;50667;50668;50669;50670;50671;50672;50673;50674 32140;32141;32142;32143;32144;32145 32142 6 SHQSSYGQHGSGSSQSSGYGQHGSSSGQTSGFGQHR Unmodified 3622.5191 0.51905213 817 CON__Q5D862;Q5D862 FLG2 Filaggrin-2 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 21.128 21.412 5 0.041184 3528 20181213_JW_Orientia_Karp_2_2 27.619 11.343 5109200 799160 0 804630 957650 650850 1331100 565820 0 + 8349 817 7129 50675;50676;50677;50678;50679;50680 32146;32147 32146 2 SHSSPASLQLGTGAGAAGSPAQQHAHLR Unmodified 2693.3382 0.33822163 1971 Q9GZV5;C9JR84;C9J038 WWTR1 WW domain-containing transcription regulator protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 33.606 34.007 4;5 0.006791 8911 20181213_JW_Orientia_Karp_2_1 56.461 34.846 164310000 26289000 39453000 37464000 17250000 21540000 0 17304000 5006600 8350 1971 7130 50681;50682;50683;50684;50685;50686;50687;50688;50689;50690;50691;50692;50693 32148;32149;32150;32151;32152 32149 5 SHTILLVQPTK Acetyl (Protein N-term) 1277.7343 0.73433683 135 A0A024R6D4;P84090;G3V279 ERH Enhancer of rudimentary homolog yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.723 52.068 2 1.7238E-13 20580 20181213_JW_Orientia_Karp_1_1 223.31 180.71 425670000 90168000 50602000 58712000 71540000 52572000 73093000 16243000 12738000 8351 135 7131 50694;50695;50696;50697;50698;50699;50700;50701 32153;32154;32155;32156;32157;32158;32159 32153 7 SHVEDGDIAGAPASSPEAPPAEQDPVQLK Unmodified 2911.3836 0.38355964 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 49.358 49.746 3 4.5486E-07 18405 20181213_JW_Orientia_Karp_1_2 113.62 83.9 172150000 0 73791000 39998000 19316000 14396000 8544000 0 16100000 8352 279 7132 50702;50703;50704;50705;50706;50707;50708 32160;32161;32162;32163;32164;32165;32166 32160 6 SIAAATSALVK Unmodified 1030.6023 0.60226003 2016 Q9Y490;Q9Y4G6;G1UI21;H0YMT1 TLN1;TLN2 Talin-1;Talin-2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 43.429 43.745 2 0.019908 14976 20181213_JW_Orientia_Karp_1_2 85.355 32.952 92913000 30235000 31659000 19345000 4641400 0 669430 6363200 0 8353 2016 7133 50709;50710;50711;50712;50713;50714 32167 32167 1 SIAEVELYDTLNYLPK Unmodified 1866.9615 0.96149581 1437 Karp_02402 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 73.039 73.113 2;3 5.0749E-20 29545 20181213_JW_Orientia_Karp_2_2 222.55 160.59 101070000 0 0 62338000 0 9284900 0 29447000 0 8354 1437 7134 50715;50716;50717;50718;50719 32168;32169;32170;32171;32172 32170 5 SIAEYGAFIEVTK Unmodified 1426.7344 0.73439641 1095 Karp_00244 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 60.575 60.862 2 3.7252E-25 23289 20181213_JW_Orientia_Karp_2_2 236.69 164.37 319380000 100000000 47370000 64266000 34747000 38368000 26780000 0 7842000 8355 1095 7135 50720;50721;50722;50723;50724;50725;50726;50727 32173;32174;32175;32176;32177;32178;32179;32180;32181 32177 9 SIAFPSIGSGR Unmodified 1090.5771 0.57710791 1518 O75367-2;O75367-3;O75367;Q59FH0;B4DJC3 H2AFY Core histone macro-H2A.1;Histone H2A yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 53.066 53.316 2 0.024281 21434 20181213_JW_Orientia_Karp_1_1 82.831 40.434 151090000 74084000 17152000 48059000 3794400 2404100 5594000 0 0 8356 1518 7136 50728;50729;50730;50731;50732;50733 32182;32183 32182 2 SIAIWCIR Unmodified 1017.543 0.54297101 1150 Karp_00511 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.326 58.586 2 0.0041858 24831 20181213_JW_Orientia_Karp_1_1 141.78 91.079 110970000 58131000 13649000 14659000 0 6055900 14815000 0 3661300 8357 1150 7137 50734;50735;50736;50737;50738;50739 32184;32185;32186;32187;32188;32189 32184 6 SIATLAITTLLK Unmodified 1243.7751 0.77513901 541 B3KW21;Q8WUI6;Q9Y678;Q9NUP3;B3KND4;Q9H9B7;Q9UBF2-2;Q9UBF2 COPG;COPG1;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma;Coatomer subunit gamma-2 yes no 0 0 0 0 By MS/MS By matching 1 1 72.344 72.42 2 0.034673 33308 20181213_JW_Orientia_Karp_1_1 76.843 40.083 12316000 9434800 0 0 0 0 0 2881300 0 8358 541 7138 50740;50741 32190 32190 1 SICTTVLELLDK Unmodified 1390.7378 0.73776723 1635 P27348;E9PG15;B4DMT8 YWHAQ 14-3-3 protein theta yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 72.075 72.185 2 0.0017146 33162 20181213_JW_Orientia_Karp_1_2 125.23 58.019 53481000 9502900 9009200 9214200 0 6181900 0 17376000 2196300 8359 1635 7139 50742;50743;50744;50745;50746;50747 32191 32191 1 SIDENTVHGSDSLENADIEIK Unmodified 2285.0659 0.065913898 1397 Karp_02170 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 3 2 2 1 2 49.021 49.345 2;3 2.8706E-22 17337 20181213_JW_Orientia_Karp_2_3 197.41 151.8 1235900000 195730000 308850000 320610000 137730000 75145000 130630000 208990 67041000 8360 1397 7140 50748;50749;50750;50751;50752;50753;50754;50755;50756;50757;50758;50759;50760;50761;50762;50763 32192;32193;32194;32195;32196;32197;32198;32199 32197 8 SIDENTVHGSDSLENADIEIK Deamidation (NQ) 2286.0499 0.049929483 1397 Karp_02170 yes yes 0 1 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 50.864 51.145 3 0.0063411 19597 20181213_JW_Orientia_Karp_1_1 92.897 66.751 52157000 14310000 14625000 0 0 9520500 9465700 4235800 0 8361 1397 7140 50764;50765;50766;50767;50768 32200;32201 32200 906;907 2 SIEALLEAGQAR Unmodified 1256.6725 0.67246486 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 55.959 56.317 2 4.0944E-11 22583 20181213_JW_Orientia_Karp_1_3 198.72 124.25 144460000 34591000 50612000 33630000 7864800 7188100 6635800 3381500 556320 8362 279 7141 50769;50770;50771;50772;50773;50774;50775;50776 32202;32203;32204;32205;32206;32207;32208;32209 32205 8 SIEPGSDYYELSDTR Unmodified 1730.7635 0.76352429 82 A0A024R407;A0A024R3Z1;P11137-3;P11137;Q6NYC5 MAP2 Microtubule-associated protein;Microtubule-associated protein 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 51.201 51.441 2 0.010271 19949 20181213_JW_Orientia_Karp_1_1 96.756 58.735 17666000 8282600 0 5337200 0 3203300 0 0 842860 8363 82 7142 50777;50778;50779;50780 32210 32210 1 SIESLIAVFQK Unmodified 1233.6969 0.69688869 450 B2R5H0 Protein S100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 70.916 71.05 2 2.3824E-25 28326 20181213_JW_Orientia_Karp_3_2 243.29 163.58 55713000 0 0 2863900 2551400 10460000 8889500 28294000 2654100 8364 450 7143 50781;50782;50783;50784;50785;50786;50787 32211;32212;32213;32214;32215;32216;32217 32216 7 SIEYSPQLEDAGSR Unmodified 1550.7213 0.72126554 195 A0A024RAB6;P98160;Q5SZJ2 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.434 45.787 2 0.0039785 15941 20181213_JW_Orientia_Karp_1_3 113.95 89.67 89210000 0 30487000 38764000 0 0 0 0 19959000 8365 195 7144 50788;50789;50790 32218;32219;32220 32219 3 SIFEYEPGK Unmodified 1068.5128 0.51277632 735 H7BZK1;B7Z997;O94875-9;O94875-7;O94875;O94875-11;H7C1R7;B7Z3D7;B3KPU4;H7BXR3;O94875-5;O94875-3;O94875-8;O94875-2;O94875-4;O94875-12;O94875-10;H7BZX1;Q96RE2;O94875-6 SORBS2 Sorbin and SH3 domain-containing protein 2 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 48.563 48.746 2 0.026395 18061 20181213_JW_Orientia_Karp_1_2 80.219 44.923 24121000 10678000 11706000 1737800 0 0 0 0 0 8366 735 7145 50791;50792;50793 32221 32221 1 SIFQHIQSAQSQR Unmodified 1528.7746 0.77463852 2009 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 35.329 35.702 3 0.010712 10549 20181213_JW_Orientia_Karp_1_3 100.73 50.798 243020000 55414000 131260000 27490000 4582100 5418400 0 15277000 3580200 8367 2009 7146 50794;50795;50796;50797;50798;50799;50800 32222;32223;32224;32225 32223 4 SIFSGIGSTAEPVSQSTTSDYQWDVSR Unmodified 2904.3414 0.34136048 180 A0A024R9D2;Q86UE4;H0YBJ8 MTDH Protein LYRIC yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 67.304 67.504 3 0.00039429 30116 20181213_JW_Orientia_Karp_1_1 109.03 84.012 21855000 7721800 6711300 4400100 0 0 0 3021700 0 8368 180 7147 50801;50802;50803;50804 32226 32226 1 SIFTGFGSFVTR Unmodified 1317.6717 0.67173657 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.322 67.498 2 1.2522E-05 30264 20181213_JW_Orientia_Karp_1_1 190.57 135.85 357680000 125130000 52725000 87172000 0 29551000 30580000 0 32521000 8369 1193 7148 50805;50806;50807;50808;50809;50810 32227;32228;32229;32230;32231 32227 5 SIFYGNIGTDK Unmodified 1213.5979 0.59790293 1193 Karp_00798 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.568 49.818 2 0.00036008 17398 20181213_JW_Orientia_Karp_2_2 147.3 93.706 372140000 89301000 95543000 77244000 50110000 28120000 31826000 0 0 8370 1193 7149 50811;50812;50813;50814;50815;50816 32232;32233;32234 32233 3 SIGIENIILCDSQGVIYK Unmodified 2021.0503 0.050327596 1336 Karp_01409 yes yes 0 0 0 0 By MS/MS By matching 1 1 72.443 72.518 2 0.0006795 33286 20181213_JW_Orientia_Karp_1_1 118.73 52.922 21185000 11041000 10144000 0 0 0 0 0 0 8371 1336 7150 50817;50818 32235 32235 1 SIGPYSLVTQQPLGGK Unmodified 1643.8883 0.88827129 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 58.601 58.857 2 1.7919E-13 24235 20181213_JW_Orientia_Karp_1_3 201.38 141.13 580310000 145360000 94409000 232640000 33333000 38094000 33437000 3037700 0 8372 1170 7151 50819;50820;50821;50822;50823;50824;50825;50826;50827 32236;32237;32238;32239;32240;32241;32242;32243;32244;32245 32240 10 SIHFSSPVFTSR Acetyl (Protein N-term) 1405.699 0.69901396 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79 KRT7 Keratin, type II cytoskeletal 7 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.853 60.103 2 0.00051669 25426 20181213_JW_Orientia_Karp_1_2 147.73 92.648 87393000 32201000 23501000 20951000 4029600 0 6711400 0 0 + 8373 811 7152 50828;50829;50830;50831;50832;50833 32246;32247;32248;32249;32250;32251 32247 6 SIINNMVK Oxidation (M) 933.49535 0.49535211 1227 Karp_00894 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 30.534 30.944 2 0.018211 8865 20181213_JW_Orientia_Karp_1_1 87.181 15.466 75474000 41270000 0 12518000 7898500 7761800 0 4091400 1934900 8374 1227 7153 50834;50835;50836;50837;50838;50839 32252 32252 791 1 SIINNMVK Unmodified 917.50044 0.50043749 1227 Karp_00894 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 41.712 41.961 2 0.038383 13792 20181213_JW_Orientia_Karp_1_3 77.923 17.135 69769000 33017000 14178000 22493000 80836 0 0 0 0 8375 1227 7153 50840;50841;50842;50843 32253 32253 1 SIITYVSSLYDAMPR Oxidation (M) 1730.8549 0.85492225 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;E9PMV1 PLEC Plectin yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 68.849 69.015 2 0.025549 31197 20181213_JW_Orientia_Karp_1_1 76.522 37.74 12258000 5872600 5236600 0 1148700 0 0 0 0 8376 1803 7154 50844;50845;50846 32254 32254 1446 1 SILAETEGMLR Oxidation (M) 1234.6227 0.62273747 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 47.112 47.378 2 0.0035408 17459 20181213_JW_Orientia_Karp_1_1 108.43 51.704 13666000 9036700 0 0 1513100 0 3116500 0 0 8377 279 7155 50847;50848;50849 32255 32255 201 1 SILAETEGMLR Unmodified 1218.6278 0.62782285 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By matching 1 1 56.107 56.687 2 0.0053025 21277 20181213_JW_Orientia_Karp_2_1 106.88 69.331 3189000 0 0 0 3144600 0 0 0 44395 8378 279 7155 50850;50851 32256 32256 1 SILDPFMPEK Oxidation (M) 1191.5846 0.58456105 1160 Karp_00595 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 60.673 60.974 2 0.0022043 25579 20181213_JW_Orientia_Karp_1_3 112.11 42.48 581210000 205050000 84060000 102960000 0 60009000 72713000 1562400 54864000 8379 1160 7156 50852;50853;50854;50855;50856;50857;50858 32257;32258;32259;32260;32261;32262 32259 692 6 SILDPFMPEK Unmodified 1175.5896 0.58964643 1160 Karp_00595 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 66.002 66.18 2 0.035252 29514 20181213_JW_Orientia_Karp_1_1 74.841 37.292 272680000 54381000 25663000 161540000 1810000 13126000 9213200 6949500 0 8380 1160 7156 50859;50860;50861;50862;50863;50864;50865 32263 32263 1 SILEELLLK Unmodified 1056.6431 0.64306221 381 B2R8Z4;A8K709;P51813 BMX Non-specific protein-tyrosine kinase;Cytoplasmic tyrosine-protein kinase BMX yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 72.002 72.134 2 0.0028442 32729 20181213_JW_Orientia_Karp_1_3 114.5 6.8042 16001000 0 3849300 3011000 0 0 0 9140500 0 8381 381 7157 50866;50867;50868 32264;32265;32266 32265 3 SILLSGTVLPSAQR Unmodified 1440.83 0.83002813 9 Q8WYQ7;B3KWW5;A0A024QZ02;A0A024QZ55;O00182-2;O00182;B4DJD7;F8W9W4;J3QS92;J3KSA0;B4DWP7 LGALS9 Galectin;Galectin-9 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 59.136 59.436 2 0.012242 24638 20181213_JW_Orientia_Karp_1_3 119.34 0 46722000 15331000 13671000 10962000 2436000 0 4152200 168830 0 8382 9 7158 50869;50870;50871;50872;50873;50874 32267;32268 32268 0 SILSLITAPDPILK Unmodified 1479.8912 0.8912314 1113 Karp_00296 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 74.021 74.053 2 2.0455E-18 29873 20181213_JW_Orientia_Karp_2_2 224.58 162.98 1103800000 380810000 378680000 255030000 7572800 34057000 14629000 27700000 5323900 8383 1113 7159 50875;50876;50877;50878;50879;50880;50881;50882 32269;32270;32271;32272;32273;32274 32271 6 SILSLITAPDPILKK Unmodified 1607.9862 0.98619442 1113 Karp_00296 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 66.736 66.889 3 0.021518 26218 20181213_JW_Orientia_Karp_2_2 68.277 53.289 22176000 9564600 0 0 0 7198400 4023000 0 1389700 8384 1113 7160 50883;50884;50885;50886 32275;32276;32277 32276 3 SIMELMNVLELRK 2 Oxidation (M);Deamidation (NQ) 1607.8263 0.82626466 426 Q86VX4;B0AZQ4;Q9UQE7 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 0 1 2 1 By MS/MS By MS/MS 1 1 76.975 76.999 2 0.013729 36383 20181213_JW_Orientia_Karp_1_2 77.192 7.9162 10250000 0 6480300 3769600 0 0 0 0 0 8385 426 7161 50887;50888 32278;32279 32278 167 285;286 0 SIMMYACTKNVDLAIQQGKQK 3 Deamidation (NQ) 2429.1641 0.1640535 505 E7EMZ0;Q05C95;D3DT08;F1T0K4;F5H269;B2RWN7;Q9Y485 DMXL1 DmX-like protein 1 yes no 0 3 0 2 By MS/MS 1 40.959 41.11 4 0.036532 12464 20181213_JW_Orientia_Karp_2_2 44.1 23.286 1480200 0 0 0 0 1480200 0 0 0 8386 505 7162 50889 32280 32280 1483;1484 0 SIMSDNWIK Oxidation (M) 1108.5223 0.52229515 1454 Karp_02591 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 43.234 43.534 2 0.0010822 15202 20181213_JW_Orientia_Karp_1_1 127.46 57.834 146710000 32033000 43673000 28969000 13436000 5469400 0 23126000 0 8387 1454 7163 50890;50891;50892;50893;50894;50895;50896 32281;32282;32283;32284;32285;32286 32281 1064 6 SIMSDNWIK Unmodified 1092.5274 0.52738052 1454 Karp_02591 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.227 52.529 2 0.001599 20502 20181213_JW_Orientia_Karp_1_2 123.21 54.837 167930000 64446000 42549000 20067000 16939000 8271500 15570000 0 86619 8388 1454 7163 50897;50898;50899;50900;50901;50902;50903 32287;32288;32289;32290;32291;32292 32288 6 SINDNIAIFTEVQK Unmodified 1590.8253 0.82533668 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 62.447 62.706 2 8.3079E-59 27325 20181213_JW_Orientia_Karp_1_1 309.35 219.45 119640000 20628000 26192000 53835000 748630 6699100 6191500 0 5344600 8389 224 7164 50904;50905;50906;50907;50908;50909;50910 32293;32294;32295;32296;32297 32293 5 SINPDEAVAYGAAVQAAILSGDK Unmodified 2259.1383 0.13829098 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PNE6;B4E1Q1;A8K7Q2 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 72.951 73.02 2 0.015262 33781 20181213_JW_Orientia_Karp_1_2 69.935 37.505 104950000 28657000 27902000 28193000 10139000 0 10062000 0 0 8390 1586 7165 50911;50912;50913;50914;50915 32298;32299 32299 2 SINQPVAFVR Unmodified 1129.6244 0.62439245 954 H0YJ40;G3V4X6;G3V2S9;Q9GZT3-2;Q9GZT3;H0YJI1 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 47.009 47.339 2 0.0069169 15122 20181213_JW_Orientia_Karp_3_2 99.013 59.76 53424000 12915000 19365000 11981000 2875000 946590 0 75606 5266500 8391 954 7166 50916;50917;50918;50919;50920;50921;50922 32300;32301 32301 2 SINVLIR Unmodified 813.50724 0.50723743 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 46.248 46.382 2 0.032926 15339 20181213_JW_Orientia_Karp_2_2 87.323 22.07 12010000 8133900 0 0 0 1393200 2482700 0 0 8392 1789 7167 50923;50924;50925 32302 32302 1 SIPDQMLDDSLK Unmodified 1360.6544 0.65443153 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 56.027 56.385 2 0.0017659 21076 20181213_JW_Orientia_Karp_2_1 124.6 69.535 710510000 149180000 163990000 215200000 58389000 61289000 49598000 7771500 5089800 8393 1126 7168 50926;50927;50928;50929;50930;50931;50932;50933 32303;32304;32305;32306;32307 32304 5 SIQADGLVWGSSK Unmodified 1346.683 0.68302954 80 A0A024R3W7;P24534;A4D1M6 EEF1B2;LOC392793 Elongation factor 1-beta yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.85 53.158 2 1.8961E-07 21267 20181213_JW_Orientia_Karp_1_1 204.32 143.49 193730000 37494000 55404000 31331000 27271000 18771000 16848000 6615900 0 8394 80 7169 50934;50935;50936;50937;50938;50939;50940 32308;32309;32310;32311 32308 3 SIQEAPAVSEDLVIR Unmodified 1625.8625 0.86245047 1026 J3KN66;Q5JTV8-3;Q5JTV8-2 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 56.757 57.073 2 0.00052585 23099 20181213_JW_Orientia_Karp_1_3 152.16 85.567 39073000 9173200 8797600 7746200 4729500 2968600 2224900 0 3432700 8395 1026 7170 50941;50942;50943;50944;50945;50946;50947 32312;32313;32314;32315;32316;32317 32314 6 SIQEIQELDK Unmodified 1201.619 0.6190323 1035 J3KRE2;J3KTF8;V9HWE8;J3QQX2;P52565;J3KS60;J3QW41;J3KRY1;P52565-2 ARHGDIA;HEL-S-47e Rho GDP-dissociation inhibitor 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.806 44.136 2 1.1991E-06 14413 20181213_JW_Orientia_Karp_2_1 185.33 48.338 202770000 54515000 53825000 50994000 7555100 9067600 0 23314000 3503500 8396 1035 7171 50948;50949;50950;50951;50952;50953;50954 32318;32319;32320;32321;32322;32323;32324;32325 32321 8 SIQFVDWCPTGFK Unmodified 1583.7442 0.74424959 512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.371 67.548 2 4.2734E-07 26551 20181213_JW_Orientia_Karp_2_2 180.24 125.76 225410000 63535000 44312000 72195000 0 15641000 4844000 0 24887000 8397 512 7172 50955;50956;50957;50958;50959;50960;50961 32326;32327;32328;32329;32330;32331;32332 32330 7 SIQHADEVSK Unmodified 1112.5462 0.54620171 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 18.628 18.915 2 0.003384 3449 20181213_JW_Orientia_Karp_1_2 108.43 37.082 2172800 0 676610 603540 454000 0 0 438650 0 8398 1266 7173 50962;50963;50964;50965 32333;32334 32333 2 SIQLDGLVWGASK Unmodified 1372.7351 0.73506511 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;E9PK01;P29692-4;Q71RH4;Q9H7G6;H0YE72;H0YE58;E9PQC9 EEF1D Elongation factor 1-delta yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 65.272 65.479 2 1.8228E-17 25521 20181213_JW_Orientia_Karp_2_2 221.09 144.92 137280000 25282000 26380000 30005000 4535800 24383000 18811000 7885300 0 8399 1641 7174 50966;50967;50968;50969;50970;50971;50972;50973 32335;32336;32337;32338;32339;32340 32337 6 SIRPLFDSNFR Unmodified 1350.7044 0.70443369 1127 Karp_00330 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 47.956 48.206 3 0.00019902 16636 20181213_JW_Orientia_Karp_2_3 156.01 110.01 72438000 11630000 26722000 13122000 8482400 1963800 10518000 0 0 8400 1127 7175 50974;50975;50976;50977;50978;50979 32341;32342;32343 32343 3 SISISVAR Unmodified 831.48142 0.48141661 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 39.792 40.112 2 0.0032591 12420 20181213_JW_Orientia_Karp_3_1 155 59.203 1513600000 329090000 447140000 147050000 222820000 110280000 6964800 249430000 826280 + 8401 995;996 7176 50980;50981;50982;50983;50984;50985;50986;50987 32344;32345;32346;32347;32348;32349;32350;32351 32350 8 SISLPSNIDENNIDAK Unmodified 1728.853 0.853008 1077 Karp_00059 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.295 53.652 2 3.1857E-49 18932 20181213_JW_Orientia_Karp_3_1 262.48 181.57 1181800000 282740000 361960000 189710000 100580000 113490000 87077000 41338000 4901500 8402 1077 7177 50988;50989;50990;50991;50992;50993;50994;50995 32352;32353;32354;32355;32356;32357;32358;32359;32360 32358 9 SISLPSNIDENNIDAK Deamidation (NQ) 1729.837 0.83702358 1077 Karp_00059 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.935 55.293 2 6.7333E-20 22208 20181213_JW_Orientia_Karp_1_2 222.56 140.61 1376300000 288460000 380600000 348310000 82947000 139250000 120920000 5948300 9897600 8403 1077 7177 50996;50997;50998;50999;51000;51001;51002;51003 32361;32362;32363;32364;32365;32366;32367;32368;32369 32362 425;426 9 SISLYYTGEK Unmodified 1159.5761 0.57610486 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338;H7BY16;Q9BQ02 NCL Nucleolin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 46.314 46.534 2 0.0002767 14755 20181213_JW_Orientia_Karp_3_2 142.43 64.278 67012000 30121000 0 0 0 14754000 0 0 22137000 8404 88 7178 51004;51005;51006;51007 32370;32371;32372;32373 32373 4 SISVIDSPGILSGEK Unmodified 1500.8035 0.80353861 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 58.848 59.148 2 3.5931E-13 25142 20181213_JW_Orientia_Karp_1_1 202 133.11 122930000 35990000 53729000 24171000 3373100 0 3932100 1735200 0 8405 185 7179 51008;51009;51010;51011;51012;51013;51014 32374;32375;32376;32377;32378 32374 5 SISVLNTTTTVR Unmodified 1290.7143 0.71432967 1282 Karp_01118 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.451 46.753 2 1.7183E-30 15578 20181213_JW_Orientia_Karp_2_2 243.91 176.42 245180000 83854000 53900000 42975000 0 23056000 17038000 1465200 22888000 8406 1282 7180 51015;51016;51017;51018;51019;51020;51021;51022 32379;32380;32381;32382;32383;32384;32385;32386 32383 8 SITLFVQEDR Unmodified 1206.6245 0.62445203 186 A0A024R9Q1;P07996;P07996-2;A0PJG0;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 54.661 55.002 2 0.0053037 22568 20181213_JW_Orientia_Karp_1_1 101.97 21.52 31341000 7546700 9473100 12745000 1427200 0 0 0 149540 + 8407 186 7181 51023;51024;51025;51026;51027 32387 32387 1 SITNNSSDPFLNGGPYHSR 2 Deamidation (NQ) 2063.9185 0.9184618 1971 Q9GZV5;C9J337 WWTR1 WW domain-containing transcription regulator protein 1 yes no 0 2 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 51.048 51.298 3 0.023453 18175 20181213_JW_Orientia_Karp_2_1 61.821 37.533 48625000 9786100 8068100 5741700 11069000 5784100 8175600 0 0 8408 1971 7182 51028;51029;51030;51031;51032;51033 32388 32388 1218;1219 1 SIVDYKPNLDLLEQQHQLIQEALIFDNK Unmodified 3323.7402 0.74015708 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By matching By MS/MS By matching 1 1 1 72.601 72.65 4 0.029513 33101 20181213_JW_Orientia_Karp_1_3 40.718 16.965 109470000 50981000 0 34832000 0 0 0 23661000 0 8409 1509 7183 51034;51035;51036 32389 32389 1 SIVEPIVAK Unmodified 954.57498 0.57498264 1391 Karp_02140 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 45.152 45.334 2 0.042765 16261 20181213_JW_Orientia_Karp_1_1 71.379 38.381 179250000 91372000 47934000 39945000 0 0 0 0 0 8410 1391 7184 51037;51038;51039 32390 32390 1 SIVNQFFSYDR Unmodified 1374.6568 0.65681479 1099 Karp_00263 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 62.032 62.308 2 1.8874E-05 27151 20181213_JW_Orientia_Karp_1_1 169.99 130.74 216070000 97193000 20617000 65392000 5167900 0 23097000 0 4606400 8411 1099 7185 51040;51041;51042;51043;51044;51045 32391;32392;32393;32394 32391 4 SIVPQGGSHSLR Unmodified 1236.6575 0.65748349 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 29.675 30.025 3 0.01344 7822 20181213_JW_Orientia_Karp_1_3 75.739 34.035 87960000 27884000 26705000 14867000 5033800 4613200 0 8857600 0 8412 195 7186 51046;51047;51048;51049;51050;51051 32395;32396;32397;32398;32399 32396 5 SIVQDNFDELFNK Unmodified 1567.7518 0.75183739 1095 Karp_00244 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.392 65.599 2 1.2541E-24 22762 20181213_JW_Orientia_Karp_3_1 226.33 170.61 580250000 105160000 152540000 100170000 17020000 84181000 34186000 86998000 0 8413 1095 7187 51052;51053;51054;51055;51056;51057;51058 32400;32401;32402;32403;32404;32405;32406;32407;32408;32409;32410 32410 11 SIVQDNFDELFNK Deamidation (NQ) 1568.7359 0.73585297 1095 Karp_00244 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 70.78 70.893 2 0.0022402 28813 20181213_JW_Orientia_Karp_2_1 127.52 71.799 21853000 4180600 8184000 0 0 3892300 0 5595900 0 8414 1095 7187 51059;51060;51061;51062;51063 32411;32412;32413;32414 32412 452 4 SIYYITGESK Unmodified 1159.5761 0.57610486 251;1838 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 43.875 44.175 2 0.00033191 15634 20181213_JW_Orientia_Karp_1_1 140.45 101.64 117330000 30997000 33366000 35160000 0 0 0 17805000 0 8415 251;1838 7188 51064;51065;51066;51067 32415;32416;32417 32415 3 SKAEAESLYQSK Unmodified 1339.662 0.66195975 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 24.468 24.816 2;3 5.4343E-50 4560 20181213_JW_Orientia_Karp_3_2 276.17 217.55 607600000 3291700 68033000 52356000 150660000 171800000 18974000 93902000 48578000 + 8416 995;996 7189 51068;51069;51070;51071;51072;51073;51074;51075;51076;51077;51078;51079;51080;51081;51082 32418;32419;32420;32421;32422;32423;32424;32425 32425 8 SKEATELK Unmodified 904.48656 0.48656157 1067 Karp_00016 yes yes 0 0 0 1 By MS/MS 1 11.646 12.044 2 0.027492 1839 20181213_JW_Orientia_Karp_1_3 153.04 4.9929 0 0 0 0 0 0 0 0 0 8417 1067 7190 51083 32426 32426 1 SKEEAEALYHSK Unmodified 1390.6729 0.67285879 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.601 21.947 3 0.0029803 3614 20181213_JW_Orientia_Karp_2_2 151.66 90.431 159680000 10096000 24506000 22653000 30932000 20075000 22209000 15982000 13230000 + 8418 804;1657 7191 51084;51085;51086;51087;51088;51089;51090;51091 32427;32428;32429;32430;32431;32432;32433;32434 32431 8 SKELTTEIDNNIEQISSYK Unmodified 2211.0907 0.090672086 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 52.962 53.362 3 0.00087348 19377 20181213_JW_Orientia_Karp_2_1 114.46 61.291 37049000 0 0 0 10612000 14458000 9931500 2047500 0 + 8419 798 7192 51092;51093;51094;51095 32435;32436 32435 2 SKQDIIDWINNY Unmodified 1507.7307 0.73070802 1445 Karp_02423 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.609 68.817 2 6.5267E-10 31007 20181213_JW_Orientia_Karp_1_1 202.31 168.22 260760000 34199000 27047000 42494000 25427000 31669000 22200000 55591000 22137000 8420 1445 7193 51096;51097;51098;51099;51100;51101;51102;51103 32437;32438;32439;32440;32441;32442;32443 32437 7 SKQDIIDWINNY Deamidation (NQ) 1508.7147 0.7147236 1445 Karp_02423 yes yes 0 1 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 69.322 69.462 2 5.4864E-05 29776 20181213_JW_Orientia_Karp_1_2 179.94 127.77 177320000 33427000 27298000 30756000 6676500 27933000 19325000 15779000 16129000 8421 1445 7193 51104;51105;51106;51107;51108;51109;51110;51111;51112;51113;51114;51115;51116;51117 32444;32445 32444 969 2 SKQLEDELVSLQKK 2 Deamidation (NQ) 1645.8774 0.87743183 859 H0YL52;D9YZV5;D9YZV4;P09493-9;P09493-4;P09493-3;P09493-10;P09493;H0YKP3;C9IZA2;H0YKZ6 TPM1 Tropomyosin alpha-1 chain yes no 0 2 0 2 By MS/MS By matching 1 1 49.306 49.679 3 0.0089779 18299 20181213_JW_Orientia_Karp_1_3 105.95 13.8 35060000 0 0 14575000 20485000 0 0 0 0 8422 859 7194 51118;51119 32446 32446 1684;1685 1 SKQSNFISK Unmodified 1037.5506 0.55055881 1108 Karp_00286 yes yes 0 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 19.147 19.38 2 0.018335 3546 20181213_JW_Orientia_Karp_3_1 140.11 64.923 40203000 21045000 7803500 6511100 1711700 0 1499400 1632200 0 8423 1108 7195 51120;51121;51122;51123;51124;51125 32447;32448 32448 2 SKTEALTTASMK Oxidation (M) 1282.6439 0.64386684 1074 Karp_00050 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 18.584 18.942 2 5.3825E-21 3749 20181213_JW_Orientia_Karp_1_2 229 168.6 144820000 15389000 22309000 20617000 18347000 5968500 14748000 26816000 20630000 8424 1074 7196 51126;51127;51128;51129;51130;51131;51132;51133 32449;32450;32451;32452;32453;32454;32455 32450 595 7 SKTEALTTASMK Unmodified 1266.649 0.64895222 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.843 26.201 2 1.3867E-38 6254 20181213_JW_Orientia_Karp_1_3 257.09 180.99 201900000 97553000 0 38682000 20421000 10308000 9466200 12577000 12891000 8425 1074 7196 51134;51135;51136;51137;51138;51139;51140;51141 32456;32457;32458;32459;32460;32461;32462;32463 32458 8 SLADELALVDVLEDK Unmodified 1628.8509 0.85088273 1563 Q5U077;P07195;A8MW50;F5H793;C9J7H8 LDHB L-lactate dehydrogenase;L-lactate dehydrogenase B chain yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 75.354 75.377 2 6.7424E-06 30421 20181213_JW_Orientia_Karp_2_2 165.58 119.82 24506000 0 6036600 8791300 1947700 2613600 2069500 2609000 438320 8426 1563 7197 51142;51143;51144;51145;51146;51147;51148 32464 32464 1 SLAEDFAEQPIK Unmodified 1346.6718 0.67179615 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;E9PJ21;Q05D91;Q6IN67;Q9Y4L1-2;A0A024R3G0;J3QL06;J3KTF1 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By matching 1 1 52.328 52.753 2 0.0013346 20356 20181213_JW_Orientia_Karp_1_3 129.88 87.134 9148400 0 0 7474000 0 0 0 1674400 0 8427 545 7198 51149;51150 32465 32465 1 SLAEGNLLYQPQLDTLK Unmodified 1902.0098 0.0098429899 230 F5H4M0;A0A024RBU0;Q9H9H4;F5H1F6 VPS37B Vacuolar protein sorting-associated protein 37B yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 64.687 64.899 2 0.0060552 28377 20181213_JW_Orientia_Karp_1_2 115.83 68.204 16012000 5417000 0 0 1420400 3470500 4623800 0 1080400 8428 230 7199 51151;51152;51153;51154;51155;51156 32466;32467 32467 2 SLAGSSGPGASSGTSGDHGELVVR Unmodified 2184.0407 0.040702201 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-2;E9PK01;Q71RH4;Q9H7G6;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PIZ1;H0YCK7 EEF1D Elongation factor 1-delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.758 38.065 3 6.4292E-06 11448 20181213_JW_Orientia_Karp_3_1 120.15 101.62 1003400000 146580000 94191000 400270000 198130000 67379000 23960000 72895000 0 8429 1641 7200 51157;51158;51159;51160;51161;51162;51163 32468;32469;32470;32471;32472;32473;32474;32475 32475 8 SLALMYESEK Oxidation (M) 1185.5587 0.55874023 1533 O95721 SNAP29 Synaptosomal-associated protein 29 yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 41.31 41.56 2 0.0084296 13144 20181213_JW_Orientia_Karp_3_1 93.111 54.089 18797000 4399700 0 3965200 0 3674500 0 6757500 0 8430 1533 7201 51164;51165;51166;51167 32476;32477 32477 1144 2 SLAVQVLLK Unmodified 969.62227 0.62226719 1375 Karp_02111 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.137 56.495 2 0.00024753 21182 20181213_JW_Orientia_Karp_2_3 167.23 68.599 1349600000 173620000 227560000 208050000 68149000 210070000 459930000 1172400 1069300 8431 1375 7202 51168;51169;51170;51171;51172;51173;51174;51175 32478;32479;32480;32481 32479 4 SLAYLTAATHGLDEEAESLK Unmodified 2118.0481 0.04807899 1704 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 58.785 59.123 3 0.00019487 24851 20181213_JW_Orientia_Karp_1_2 115.53 81.146 36690000 0 15702000 15543000 0 5283000 0 162530 0 8432 1704 7203 51176;51177;51178;51179;51180 32482;32483;32484 32483 3 SLDLDGIIAEVK Unmodified 1271.6973 0.69728262 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q3KNV1;Q3B834 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.387 70.503 2 5.7673E-31 32097 20181213_JW_Orientia_Karp_1_1 252.16 142.68 160490000 35382000 25975000 26790000 0 13560000 6221800 52557000 0 + 8433 811 7204 51181;51182;51183;51184;51185;51186 32485;32486;32487;32488;32489;32490 32485 6 SLDLDSIIAEVK Unmodified 1301.7078 0.70784731 995 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 5 2 3 3 3 2 1 70.587 70.682 1;2 7.2583E-52 29682 20181213_JW_Orientia_Karp_2_3 283.58 179.53 9544200000 950930000 585980000 700740000 83111000 2355000000 1368600000 3242100000 257730000 + 8434 995 7205 51187;51188;51189;51190;51191;51192;51193;51194;51195;51196;51197;51198;51199;51200;51201;51202;51203;51204;51205;51206;51207;51208 32491;32492;32493;32494;32495;32496;32497;32498;32499;32500;32501;32502;32503;32504 32503 14 SLDNFFAK Unmodified 940.46543 0.46543219 826 D3DND1;Q9UKY7-2;Q9UKY7 CDV3 Protein CDV3 homolog yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 52.722 52.959 2 0.004709 19319 20181213_JW_Orientia_Karp_2_3 127.02 71.517 31084000 3786200 0 0 9284200 5523100 12490000 0 0 8435 826 7206 51209;51210;51211;51212 32505;32506;32507 32507 3 SLDQEIARPLENENQEFLK Unmodified 2272.1335 0.13353995 839 D3DVC4;P48681 NES Nestin yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 56.195 56.522 3 0.00027334 22724 20181213_JW_Orientia_Karp_1_3 125.96 80.741 122660000 44291000 27308000 30600000 12228000 0 7386300 0 847620 8436 839 7207 51213;51214;51215;51216;51217;51218 32508;32509 32509 2 SLEAEILQLQEELASSER Unmodified 2044.0324 0.032428926 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 74.474 74.473 2 0.00035345 34607 20181213_JW_Orientia_Karp_1_1 154.46 101.88 71960000 19498000 19316000 31843000 0 0 1302000 0 0 8437 944 7208 51219;51220;51221;51222 32510;32511 32510 2 SLEDALSSDTSGHFR Unmodified 1620.738 0.73797824 1570 P08133-2;P08133;Q6ZP35;E7EMC6;E5RK69;B7Z582;A8K3Q7 ANXA6 Annexin A6;Annexin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 46.658 46.951 3 0.016943 16813 20181213_JW_Orientia_Karp_1_2 68.262 43.541 54145000 19999000 14714000 10867000 751580 0 6398200 0 1416200 8438 1570 7209 51223;51224;51225;51226;51227;51228 32512;32513;32514;32515 32513 4 SLEDIILTSFNCEGSK Unmodified 1811.8611 0.86112984 1415 Karp_02252 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 2 2 73.457 73.487 2;3 1.184E-27 29730 20181213_JW_Orientia_Karp_3_2 288.61 240.42 696920000 209300000 61619000 78506000 38634000 37993000 44020000 165270000 61569000 8439 1415 7210 51229;51230;51231;51232;51233;51234;51235;51236;51237;51238;51239;51240 32516;32517;32518;32519;32520;32521;32522;32523 32523 8 SLEDIILTSFNCEGSK Deamidation (NQ) 1812.8451 0.84514543 1415 Karp_02252 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 73.964 73.991 2;3 1.2207E-08 27519 20181213_JW_Orientia_Karp_3_1 182.37 118.67 116170000 43175000 24427000 32254000 701830 5419800 0 10194000 0 8440 1415 7210 51241;51242;51243;51244;51245;51246;51247;51248;51249 32524;32525;32526 32526 934 2 SLEDLQDEYDFK Unmodified 1500.662 0.66201933 1669 P42224;J3KPM9;P42224-2;E7EPD2;D2KFR9;A5D905 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 57.908 58.229 2 2.1909E-07 24173 20181213_JW_Orientia_Karp_1_2 185.99 140.09 84691000 31179000 19120000 25829000 4432200 0 0 0 4131600 8441 1669 7211 51250;51251;51252;51253;51254;51255 32527;32528;32529;32530 32527 4 SLEDQVEMLR Oxidation (M) 1234.5864 0.58635197 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314;A2VCQ4 PRKCSH Glucosidase 2 subunit beta yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 49.161 49.461 2 0.00029962 17073 20181213_JW_Orientia_Karp_2_2 139.43 54.69 195360000 13128000 44438000 35100000 40563000 19490000 35183000 0 7457500 8442 588 7212 51256;51257;51258;51259;51260;51261;51262;51263;51264;51265;51266;51267 32531;32532;32533;32534;32535;32536;32537;32538 32535 361 8 SLEDQVEMLR Unmodified 1218.5914 0.59143734 588 K7ELL7;B4DJQ5;A0A024R7F1;P14314-2;P14314;A2VCQ4 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.023 54.29 2 1.8003E-08 21372 20181213_JW_Orientia_Karp_1_3 198.61 98.597 64764000 12535000 18288000 12852000 6931900 5582800 8574600 0 0 8443 588 7212 51268;51269;51270;51271;51272;51273 32539;32540 32540 2 SLEEFYR Unmodified 942.4447 0.44469675 1116 Karp_00304 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 44.7 44.98 2 0.02548 14713 20181213_JW_Orientia_Karp_2_2 95.352 32.637 92732000 0 40965000 33495000 6682500 5132200 6457200 0 0 8444 1116 7213 51274;51275;51276;51277;51278 32541;32542 32542 2 SLEEIMIPR Unmodified 1086.5743 0.57433072 1210 Karp_00870 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 56.972 57.256 2 0.00080706 23966 20181213_JW_Orientia_Karp_1_1 138.54 72.275 17854000 5994600 0 11687000 0 0 0 171880 0 8445 1210 7214 51279;51280;51281 32543;32544 32543 2 SLEEIYLFSLPIK Unmodified 1550.8596 0.85959692 973 H0YEN5;Q8J014;Q8N5L9;Q3KQT6;P15880;E9PQD7;Q6IPX5;E9PPT0;Q8NI61;E9PMM9;H3BNG3;H0YE27;D3DU83 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 74.875 74.875 2 2.733E-05 34503 20181213_JW_Orientia_Karp_1_3 175.15 118.37 27873000 0 0 18128000 0 0 1286000 8458700 0 8446 973 7215 51282;51283;51284 32545 32545 1 SLEGDLEDLK Unmodified 1117.5503 0.55028404 1613 P20700;E9PBF6;Q6DC98 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 51.468 51.769 2 0.0042599 18515 20181213_JW_Orientia_Karp_2_2 104.05 35.202 97707000 16194000 27179000 16829000 12480000 10837000 13792000 0 397280 8447 1613 7216 51285;51286;51287;51288;51289;51290;51291 32546;32547;32548 32548 3 SLESLDTSLFAK Unmodified 1309.6765 0.67654718 368 B4DW90;Q53HM6;B3KY12;A8K7V1;A8K566;Q12874 SF3A3 Splicing factor 3A subunit 3 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 61.451 61.761 2 1.9347E-16 26860 20181213_JW_Orientia_Karp_1_1 213.8 135.28 24455000 6504500 5583900 6202700 0 4640900 0 205480 1317600 8448 368 7217 51292;51293;51294;51295;51296;51297;51298 32549;32550;32551 32549 3 SLESLHSFVAAATK Unmodified 1459.7671 0.76709352 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;E9PMV1 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 50.057 50.331 3 0.0060986 18964 20181213_JW_Orientia_Karp_1_2 88.224 30.388 44421000 7356300 8808400 24622000 3634000 0 0 0 0 8449 1803 7218 51299;51300;51301;51302 32552;32553 32553 2 SLETENSALQLQVTER Unmodified 1816.9167 0.91667089 1613 P20700;E9PBF6;Q6DC98 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.301 52.609 2 1.8664E-50 18325 20181213_JW_Orientia_Karp_3_1 271.04 167.61 102120000 21897000 19047000 25871000 7002900 10314000 7500300 10493000 0 8450 1613 7219 51303;51304;51305;51306;51307;51308;51309 32554;32555;32556;32557;32558;32559;32560 32560 7 SLFASPTSSEEQKHRNGLSNEK Acetyl (Protein N-term);2 Deamidation (NQ) 2489.167 0.16702493 831 D3DQ59 ITGB3BP yes yes 1 2 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 1 1 50.32 50.675 3 0.016939 17315 20181213_JW_Orientia_Karp_2_1 57.414 10.366 385410000 0 64099000 73721000 89057000 75542000 69848000 11704000 1440600 8451 831 7220 51310;51311;51312;51313;51314;51315;51316;51317;51318;51319;51320;51321 32561;32562;32563 32563 303;304;1668 3 SLFNVIR Unmodified 847.49159 0.49158736 1253 Karp_00933 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 53.658 53.907 2 0.030103 21172 20181213_JW_Orientia_Karp_1_3 89.369 19.371 29606000 25237000 0 3206500 1163000 0 0 0 0 8452 1253 7221 51322;51323;51324 32564 32564 1 SLGAEPLEVDLK Unmodified 1269.6816 0.68163256 31 E9PCX7;Q2TB59;A0A024R0C3;Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 56.344 56.709 2 0.0061782 23204 20181213_JW_Orientia_Karp_1_2 104.22 40.405 22533000 0 10443000 9788400 2301200 0 0 0 0 8453 31 7222 51325;51326;51327;51328 32565;32566 32566 2 SLGAWNLENLR Unmodified 1271.6622 0.66223452 839 D3DVC4;P48681 NES Nestin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 59.114 59.398 2 6.1175E-13 25399 20181213_JW_Orientia_Karp_1_1 217.66 121.63 39774000 12434000 0 12403000 5242000 4052200 5577400 65834 0 8454 839 7223 51329;51330;51331;51332;51333;51334 32567;32568;32569;32570;32571 32567 5 SLGDDISSETSGDFR Unmodified 1584.6904 0.69035934 1590 P12429;D6RFG5;D6RA82 ANXA3 Annexin A3;Annexin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.672 50.999 2 6.85E-06 19229 20181213_JW_Orientia_Karp_1_3 165.35 133.13 40521000 9692600 12545000 10308000 0 3204400 0 3547400 1223500 8455 1590 7224 51335;51336;51337;51338;51339;51340;51341 32572;32573;32574;32575;32576;32577 32573 6 SLGEEIQESLK Unmodified 1231.6296 0.62959699 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 1 50.485 50.785 2 0.00020591 17732 20181213_JW_Orientia_Karp_2_2 155.11 72.47 37041000 0 5130500 5287700 10597000 7627100 8399300 0 0 8456 839 7225 51342;51343;51344;51345;51346;51347;51348 32578;32579;32580;32581 32580 4 SLGEIPIVESEIK Unmodified 1412.7763 0.77626123 1703 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 By MS/MS 1 62.441 62.441 2 0.018463 27232 20181213_JW_Orientia_Karp_1_1 87.298 30.569 6451100 6451100 0 0 0 0 0 0 0 8457 1703 7226 51349 32582 32582 1 SLGEISALTSK Unmodified 1104.6027 0.60265396 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.472 48.824 2 2.2613E-05 17988 20181213_JW_Orientia_Karp_1_2 167.93 110.65 133960000 35231000 62198000 0 19018000 0 7500100 0 10016000 8458 19 7227 51350;51351;51352;51353;51354;51355 32583;32584;32585;32586;32587;32588 32584 6 SLGETQLVLYGDVEELK Unmodified 1891.9779 0.97787416 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 67.129 67.305 2 6.8341E-05 29609 20181213_JW_Orientia_Karp_1_3 145.43 78.93 70646000 25770000 16380000 15779000 0 4931800 2663800 0 5121400 8459 224 7228 51356;51357;51358;51359;51360;51361;51362 32589;32590;32591 32590 3 SLGSVQAPSYGAR Unmodified 1291.6521 0.65206377 208 B2RA03;A0A024RAY2;P05783;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.562 40.882 2 0.00053233 13827 20181213_JW_Orientia_Karp_1_1 152.64 91.728 150560000 49915000 34662000 35039000 11268000 3619300 2787400 10181000 3085600 8460 208 7229 51363;51364;51365;51366;51367;51368;51369;51370 32592;32593;32594;32595;32596;32597;32598 32592 7 SLGTADVHFER Unmodified 1230.5993 0.59929991 886 E9PB61;Q86V81 ALYREF THO complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 37.8 38.251 3 0.033024 10906 20181213_JW_Orientia_Karp_2_2 54.7 18.172 13420000 0 0 0 4967700 4268700 0 4183200 0 8461 886 7230 51371;51372;51373 32599;32600 32600 2 SLGTDLMNEMR Oxidation (M) 1281.5693 0.56932169 1559 P05556;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 46.217 46.559 2 0.02296 16584 20181213_JW_Orientia_Karp_1_2 80.916 49.045 52085000 16876000 15616000 16487000 0 0 0 618820 2487000 8462 1559 7231 51374;51375;51376;51377;51378 32601 32601 1170 1 SLGVYSNIK Unmodified 979.53385 0.53384611 1129 Karp_00368 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 39.927 40.227 2 0.012535 13535 20181213_JW_Orientia_Karp_1_1 89.08 35.014 66963000 23294000 18231000 14651000 0 0 0 10787000 0 8463 1129 7232 51379;51380;51381;51382 32602 32602 1 SLGYAYVNFQQPADAER Unmodified 1927.9064 0.90644055 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E7ERJ7;B4DQX0;E5RGH3;B1ANR0;Q6IQ30;Q13310-2;Q13310;Q13310-3;E5RH24;E5RJB9;H0YBN4;B1ANR1;E5RHG7 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 56.874 57.124 2 6.7319E-05 23829 20181213_JW_Orientia_Karp_1_1 145.49 105.12 48761000 15068000 11488000 14415000 2769600 5020800 0 0 0 8464 179 7233 51383;51384;51385;51386;51387 32603;32604;32605 32603 3 SLHTLFGDELCK Unmodified 1418.6864 0.68640036 792 CON__P02769 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 2 2 1 2 49.008 49.313 2;3 1.1611E-16 16134 20181213_JW_Orientia_Karp_3_2 218.6 163.88 1433300000 266860000 248200000 96943000 331370000 165240000 233150000 3040300 88471000 + 8465 792 7234 51388;51389;51390;51391;51392;51393;51394;51395;51396;51397;51398;51399;51400 32606;32607;32608;32609;32610;32611 32610 6 SLIAVATDGHR Unmodified 1138.6095 0.60947067 1058 Karp_00002 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 36.689 36.963 2 0.0015342 11213 20181213_JW_Orientia_Karp_1_3 121.6 55.413 35431000 16579000 8482000 9310900 1058400 0 0 0 0 8466 1058 7235 51401;51402;51403;51404 32612;32613 32613 2 SLIGVEYKPVSATGAEDK Unmodified 1862.9626 0.96255845 1568 P07814;V9GYZ6;Q3KQZ8;B4DKX5 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 0 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 46.172 46.437 3 0.041286 16554 20181213_JW_Orientia_Karp_1_2 68.123 31.731 74779000 28900000 18647000 22420000 0 0 0 0 4811300 8467 1568 7236 51405;51406;51407;51408 32614 32614 1 SLIVGLK Unmodified 728.47963 0.47962569 582 B4DIT7;V9HWG3;P21980;B4DTN7;P21980-2 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 47.727 47.902 2 0.015766 17769 20181213_JW_Orientia_Karp_1_1 110.34 26.96 21669000 9623200 12045000 0 0 0 0 0 0 8468 582 7237 51409;51410 32615;32616 32615 2 SLLASSENLASSSAAFLETAK Unmodified 2096.0637 0.063729054 1166 Karp_00620 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 3 3 3 5 3 67.681 67.9 2;3 4.3407E-17 27615 20181213_JW_Orientia_Karp_2_1 191.15 138.36 3601500000 569060000 443740000 764470000 160850000 453620000 274060000 632020000 303690000 8469 1166 7238 51411;51412;51413;51414;51415;51416;51417;51418;51419;51420;51421;51422;51423;51424;51425;51426;51427;51428;51429;51430;51431;51432;51433;51434;51435;51436;51437;51438 32617;32618;32619;32620;32621;32622;32623;32624;32625;32626;32627;32628;32629;32630;32631;32632;32633 32623 17 SLLASSENLASSSAAFLETAK Deamidation (NQ) 2097.0477 0.047744639 1166 Karp_00620 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 71.095 71.191 2 5.6196E-48 25671 20181213_JW_Orientia_Karp_3_1 243.83 198.48 142240000 29642000 27204000 30583000 6591500 11175000 8923600 28119000 0 8470 1166 7238 51439;51440;51441;51442;51443;51444;51445;51446;51447;51448;51449;51450;51451;51452 32634;32635;32636;32637;32638;32639;32640 32640 561 7 SLLDASEEAIK Unmodified 1174.6081 0.60813326 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13;B4DKC9 VCL;HEL114 Vinculin yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 52.048 52.315 2 0.012552 20191 20181213_JW_Orientia_Karp_1_3 91.636 11.182 99636000 22990000 26816000 26317000 0 6361500 14741000 2410200 0 8471 19 7239 51453;51454;51455;51456;51457;51458 32641 32641 1 SLLEGEGSSGGGGR Unmodified 1261.5899 0.58985744 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 2 2 2 1 32.711 33.052 2 5.035E-35 8780 20181213_JW_Orientia_Karp_2_1 252.14 161.43 633670000 158040000 124160000 101310000 126410000 47329000 34214000 41456000 753950 + 8472 798 7240 51459;51460;51461;51462;51463;51464;51465;51466;51467;51468;51469;51470;51471;51472 32642;32643;32644;32645;32646;32647 32645 6 SLLEGEGSSSGGGGGR Unmodified 1405.6433 0.64334957 791 CON__P02535-1 yes yes 0 0 0 0 By MS/MS 1 33.091 33.091 2 3.9738E-29 9807 20181213_JW_Orientia_Karp_1_1 240.65 172.28 8941300 8941300 0 0 0 0 0 0 0 + 8473 791 7241 51473 32648 32648 1 SLLENNQQEK Unmodified 1201.5939 0.59388018 1268 Karp_01076 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 2 1 1 1 1 1 1 28.574 28.931 2 1.2241E-08 6939 20181213_JW_Orientia_Karp_3_1 202.44 109.26 60616000 12080000 19114000 12767000 3478300 1720900 1905200 3140800 6410000 8474 1268 7242 51474;51475;51476;51477;51478;51479;51480;51481;51482 32649;32650;32651;32652;32653 32652 4 SLLGELQNTDERNNR 2 Deamidation (NQ) 1759.8337 0.83366954 1878 Q6ZP05 yes yes 0 2 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 47.627 48.099 2 0.027216 15640 20181213_JW_Orientia_Karp_3_2 73.9 8.6688 1421500000 0 230040000 329200000 509070000 0 0 52847000 300330000 8475 1878 7243 51483;51484;51485;51486;51487 32654 32654 1186;1187 0 SLLQAVANLPYK Unmodified 1315.75 0.7499869 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y4P7 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 63.476 63.726 2 0.00092744 25156 20181213_JW_Orientia_Karp_2_1 135.8 94.369 34663000 12016000 11049000 10742000 788860 0 0 66936 0 8476 852 7244 51488;51489;51490;51491;51492 32655;32656 32656 2 SLLSDVEELVEK Unmodified 1359.7133 0.71332662 733 B7Z938;Q5D044;H0UI49;Q16363-2;Q16363;H0Y351;H0YAQ5 LAMA4 Laminin subunit alpha-4 yes no 0 0 0 0 By MS/MS 1 73.371 73.42 2 0.021254 33916 20181213_JW_Orientia_Karp_1_2 97.597 52.46 0 0 0 0 0 0 0 0 0 8477 733 7245 51493 32657 32657 1 SLLSELSDPVELR Unmodified 1456.7773 0.77732386 810 CON__Q2KJF1 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 69.145 69.297 2 0.0030044 24752 20181213_JW_Orientia_Karp_3_1 141.88 76.378 52158000 9839100 0 0 0 10606000 5398300 17891000 8423500 + 8478 810 7246 51494;51495;51496;51497;51498 32658;32659 32659 2 SLLSNLDEVK Unmodified 1116.6027 0.60265396 576 B7Z5C1;B4DHD2;Q4W4Y1;Q8WUM4;Q8WUM4-2 DRIP4;PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS 1 1 53.481 53.656 2 0.016179 21631 20181213_JW_Orientia_Karp_1_1 94.409 48.691 0 0 0 0 0 0 0 0 0 8479 576 7247 51499;51500 32660;32661 32660 2 SLLTEADAGHTEFTDEVYQNESR Unmodified 2611.1674 0.16741886 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14;Q9NZM1-5 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.165 54.491 3 4.1435E-36 22092 20181213_JW_Orientia_Karp_1_1 216.35 181.61 129410000 46923000 39069000 27354000 5599700 6730800 0 0 3732000 8480 1991 7248 51501;51502;51503;51504;51505;51506 32662;32663;32664;32665;32666;32667;32668;32669 32662 8 SLNIAHVAAR Unmodified 1050.5934 0.59342667 1348 Karp_01524 yes yes 0 0 0 0 By MS/MS 1 32.784 33.035 2 0.0046995 8988 20181213_JW_Orientia_Karp_2_3 107.21 74.851 1499400 0 0 0 0 0 1499400 0 0 8481 1348 7249 51507 32670 32670 1 SLNILTAFQK Unmodified 1133.6445 0.64445919 1643 V9HW71;P30040;F8VY02 HEL-S-107;ERP29 Endoplasmic reticulum resident protein 29 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 62.352 62.586 2 1.2679E-09 27342 20181213_JW_Orientia_Karp_1_1 209.73 99.608 64514000 20639000 4323400 17191000 403420 11221000 10735000 0 0 8482 1643 7250 51508;51509;51510;51511;51512;51513;51514;51515 32671;32672;32673;32674;32675;32676;32677;32678 32671 8 SLNNQFASFIDK Unmodified 1382.683 0.68302954 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 1 1 1 1 57.726 58.015 2 5.1471E-52 20339 20181213_JW_Orientia_Karp_3_2 317.75 202.26 3482200000 566540000 449660000 460280000 529750000 691960000 766370000 17590000 0 + 8483 995;996 7251 51516;51517;51518;51519;51520;51521;51522;51523;51524;51525 32679;32680;32681;32682;32683;32684;32685;32686;32687;32688 32688 9 SLNNQFASFIDK Deamidation (NQ) 1383.667 0.66704513 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 4 3 3 4 61.45 61.758 2 4.1639E-64 23558 20181213_JW_Orientia_Karp_2_1 289.22 195.62 1088300000 271860000 138440000 194820000 38633000 170720000 165090000 6583700 102170000 + 8484 995;996 7251 51526;51527;51528;51529;51530;51531;51532;51533;51534;51535;51536;51537;51538;51539;51540;51541;51542;51543;51544;51545;51546;51547;51548;51549;51550 32689;32690;32691;32692;32693;32694;32695;32696;32697;32698;32699;32700;32701;32702;32703;32704;32705;32706;32707 32696 359;360 19 SLNNQFASFIDK 2 Deamidation (NQ) 1384.6511 0.65106071 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 2 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 64.714 64.915 2 0.0022875 25264 20181213_JW_Orientia_Karp_2_2 132.56 88.795 52073000 12973000 9991000 6683800 1384700 12032000 8507800 0 500980 + 8485 995;996 7251 51551;51552;51553;51554;51555;51556;51557 32708;32709;32710;32711;32712 32711 359;360 5 SLNVGAQFVISVASK Unmodified 1518.8406 0.84059282 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 1 64.678 64.91 2 1.9987E-49 25272 20181213_JW_Orientia_Karp_2_3 297.03 195.73 358830000 89884000 82046000 56797000 9479800 60212000 20185000 24184000 16044000 8486 1296 7252 51558;51559;51560;51561;51562;51563;51564;51565;51566;51567;51568;51569;51570 32713;32714;32715;32716;32717;32718;32719;32720;32721;32722 32720 10 SLPDWTVQNGK Deamidation (NQ) 1244.6037 0.60371659 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;A0A075B727;A0A075B728;A0A075B737 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 1 0 0 By MS/MS By MS/MS By matching 1 1 1 51.654 51.923 2 0.016516 19894 20181213_JW_Orientia_Karp_1_3 97.597 51.595 71362000 37259000 0 33079000 0 0 0 0 1024300 8487 274 7253 51571;51572;51573 32723;32724 32724 103 2 SLPEHHQK Unmodified 974.49338 0.49337828 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS 1 1.7964 1.7964 2 0.025632 275 20181213_JW_Orientia_Karp_1_1 101.28 27.668 0 0 0 0 0 0 0 0 0 8488 1133 7254 51574 32725 32725 1 SLPGSLANVVK Unmodified 1083.6288 0.62880913 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 50.575 50.926 2 0.017262 17992 20181213_JW_Orientia_Karp_2_2 86.882 26.763 104810000 0 26489000 24528000 26148000 11677000 15419000 0 547880 8489 1789 7255 51575;51576;51577;51578;51579;51580 32726 32726 1 SLPLLEGQIR Unmodified 1124.6554 0.65535823 1612 P20592;Q75MY8 MX2 Interferon-induced GTP-binding protein Mx2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 56.863 56.962 2 0.003694 23806 20181213_JW_Orientia_Karp_1_1 106.88 68.72 15246000 8517800 0 6727800 0 0 0 0 0 8490 1612 7256 51581;51582 32727;32728 32727 2 SLPLLENQIK Unmodified 1153.6707 0.67067394 1611 P20591;F8W8T1;Q8NAA8;P20591-2 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 54.654 54.837 2 0.00080334 21988 20181213_JW_Orientia_Karp_1_2 128.27 72.899 52665000 11089000 21842000 19734000 0 0 0 0 0 8491 1611 7257 51583;51584;51585 32729;32730 32729 2 SLQAFQDYIR Unmodified 1239.6248 0.62478638 1534 O95786-2;O95786;Q3B797 DDX58 Probable ATP-dependent RNA helicase DDX58 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 55.589 55.772 2 0.016255 23026 20181213_JW_Orientia_Karp_1_1 86.344 46.3 17595000 4695000 5823500 7076100 0 0 0 0 0 8492 1534 7258 51586;51587;51588 32731;32732;32733 32731 3 SLQDIIAILGMDELSEEDK Oxidation (M) 2134.0351 0.035131042 1560 Q0QEN7;V9HW31;P06576;F8W079 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 2 2 76.683 76.678 2;3 1.9694E-07 36161 20181213_JW_Orientia_Karp_1_2 160.8 126.42 59840000 9263100 10269000 15851000 4962200 2499500 4912800 12082000 0 8493 1560 7259 51589;51590;51591;51592;51593;51594;51595;51596;51597;51598;51599;51600 32734;32735;32736;32737 32734 1174 4 SLQDVIAILGVDELSDDEK Unmodified 2058.0368 0.036845601 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 76.645 76.646 2 2.1829E-32 31131 20181213_JW_Orientia_Karp_2_2 281.49 210.77 299580000 93599000 62635000 69013000 28604000 32609000 12624000 0 497470 8494 1341 7260 51601;51602;51603;51604;51605;51606;51607 32738;32739;32740;32741;32742;32743 32742 6 SLQEEHVAVAQLR Unmodified 1478.7841 0.78414057 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 2 2 1 1 1 1 38.786 39.115 2;3 0.0093938 12459 20181213_JW_Orientia_Karp_1_2 100.02 55 109280000 27490000 52371000 23571000 2268800 2335000 0 995020 251520 8495 1803 7261 51608;51609;51610;51611;51612;51613;51614;51615;51616 32744;32745;32746;32747 32745 4 SLQPNIDLSK Unmodified 1113.603 0.60298831 1139 Karp_00451 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 46.242 46.5 2 0.0029944 14780 20181213_JW_Orientia_Karp_3_2 110.38 44.03 318790000 71335000 92532000 60888000 34284000 11345000 18673000 0 29737000 8496 1139 7262 51617;51618;51619;51620;51621;51622;51623;51624 32748;32749;32750;32751;32752;32753 32753 6 SLSAIYLEK Unmodified 1022.5648 0.56481189 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 48.001 48.2 2 0.0048124 17624 20181213_JW_Orientia_Karp_1_2 105.1 64.072 27277000 6294200 8516700 11582000 0 0 883540 0 0 8497 1803 7263 51625;51626;51627;51628 32754;32755 32754 2 SLSDMLK Unmodified 792.40514 0.40514012 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By matching 1 1 47.164 47.436 2 0.019746 17453 20181213_JW_Orientia_Karp_1_1 102.77 20.468 20575000 19855000 0 0 720430 0 0 0 0 8498 1169 7264 51629;51630 32756 32756 1 SLSGADHFFR Unmodified 1135.5411 0.54105675 1274 Karp_01105 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 1 1 2 2 40.728 41.091 2;3 0.00018484 12757 20181213_JW_Orientia_Karp_2_1 145.72 76.936 474690000 155270000 164620000 75199000 29377000 9142900 10158000 30561000 361380 8499 1274 7265 51631;51632;51633;51634;51635;51636;51637;51638;51639;51640;51641;51642;51643 32757;32758 32757 2 SLSSLSAPSQEEVPR Unmodified 1585.7948 0.79476484 2040 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 2 64.873 65.223 2 0.0012176 22494 20181213_JW_Orientia_Karp_3_1 130.98 21.692 14379000 0 0 0 361660 0 1220000 12798000 0 + 8500 2040 7266 51644;51645;51646;51647 32759 32759 1 SLTIGQEVVFK Unmodified 1219.6812 0.68123863 1095 Karp_00244 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 56.671 56.986 2 0.00033097 21508 20181213_JW_Orientia_Karp_2_3 148.56 102.17 230200000 58339000 60934000 61750000 7445300 19237000 21303000 0 1192900 8501 1095 7267 51648;51649;51650;51651;51652;51653;51654 32760;32761;32762;32763;32764;32765 32764 4 SLTNDWEDHLAVK Unmodified 1526.7365 0.73652168 1057;251 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q96HX7;Q86U12;B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50 EL52;HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta no no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 49.263 49.629 3 0.023486 18308 20181213_JW_Orientia_Karp_1_3 74.237 49.678 37966000 0 19449000 11843000 6674700 0 0 0 0 8502 1057;251 7268 51655;51656;51657 32766;32767 32767 2 SLTSNHQK Unmodified 913.46174 0.4617438 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS 1 1 1.1185 1.4484 2 0.0051335 292 20181213_JW_Orientia_Karp_3_1 120.62 54.818 460790 0 0 0 0 0 0 175880 284910 8503 345 7269 51658;51659 32768;32769 32768 2 SLVASLAEPDFVVTDFAK Unmodified 1907.988 0.98804492 42 A0A024R1A3;P22314-2;P22314 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 73.513 73.554 2 0.00041475 33995 20181213_JW_Orientia_Karp_1_2 126.32 85.592 110240000 26721000 29170000 33603000 0 0 0 14726000 6021400 8504 42 7270 51660;51661;51662;51663;51664 32770;32771;32772;32773;32774 32771 5 SLVDLTAVDVPTR Unmodified 1384.7562 0.75619449 1524 Q9UF24;Q53FM7;O75489;E9PS48;B4DFM8 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 63.59 63.76 2 0.0054238 28021 20181213_JW_Orientia_Karp_1_1 109.39 73.055 12480000 4298700 0 7795300 0 0 0 0 385580 8505 1524 7271 51665;51666;51667;51668 32775;32776;32777 32775 3 SLVGLGGTK Unmodified 830.48617 0.48616764 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 38.616 38.937 2 0.0062691 11264 20181213_JW_Orientia_Karp_2_2 101.46 40.7 114870000 51448000 0 0 20615000 21309000 6884200 14615000 0 + 8506 804;1657 7272 51669;51670;51671;51672;51673 32778 32778 1 SLVNLGGSK Unmodified 873.49198 0.4919813 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 38.901 39.217 2 0.0033055 12467 20181213_JW_Orientia_Karp_1_2 112.3 29.843 903560000 271360000 195690000 99191000 170520000 1311900 0 165480000 0 + 8507 995;996 7273 51674;51675;51676;51677;51678;51679 32779;32780;32781;32782 32779 4 SLVPAAELLESR Unmodified 1283.7085 0.70851601 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 61.462 61.706 2 0.020123 26111 20181213_JW_Orientia_Karp_1_3 85.813 45.94 53639000 13835000 14577000 18520000 0 2776900 2051500 0 1878900 8508 1803 7274 51680;51681;51682;51683;51684;51685 32783;32784 32784 2 SLVSKGTLVQTK Unmodified 1259.7449 0.74490152 1604;1605;1606;291;1763 P16402;Q4VB24;B2R984;A3R0T8;P10412;P16401;P16403;Q02539 HIST1H1D;HIST1H1E;HIST1H1B;HIST1H1C;HIST1H1A Histone H1.3;Histone H1.4;Histone H1.5;Histone H1.2;Histone H1.1 no no 0 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 31.699 32.072 3 0.035259 9411 20181213_JW_Orientia_Karp_1_1 77.527 49.665 233360000 110550000 61887000 48810000 2705500 1724100 0 5976000 1709500 8509 1605;291;1604;1606;1763 7275 51686;51687;51688;51689;51690;51691;51692 32785 32785 1 SLYASSPGGVYATR Unmodified 1427.7045 0.70449327 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.344 43.665 2 4.4434E-19 13595 20181213_JW_Orientia_Karp_3_2 225.55 162.02 9109800000 2178000000 2883900000 2608100000 276610000 296030000 169200000 527740000 170240000 8510 1571 7276 51693;51694;51695;51696;51697;51698;51699;51700 32786;32787;32788;32789;32790;32791;32792;32793;32794 32794 9 SLYDEVAAQGEVVR Unmodified 1534.7627 0.76273643 1568 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 54.703 55.097 2 0.0012324 22163 20181213_JW_Orientia_Karp_1_2 132.79 88.026 51860000 22437000 21509000 3428600 2192200 0 0 1440200 853230 8511 1568 7277 51701;51702;51703;51704;51705;51706 32795 32795 1 SLYNLGGSK Unmodified 937.4869 0.48689592 799 CON__P13647;P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 38.551 38.931 2 0.036802 11697 20181213_JW_Orientia_Karp_2_1 73.841 20.904 33709000 0 9501000 7759700 6787900 2235100 0 7424900 0 + 8512 799 7278 51707;51708;51709;51710;51711 32796;32797 32796 2 SLYNLGGSKR Unmodified 1093.588 0.58800695 799 CON__P13647;P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 1 By matching By matching By MS/MS 1 1 1 28.89 29.308 3 0.023883 7192 20181213_JW_Orientia_Karp_3_1 57.532 19.229 2858100 0 0 0 0 1087700 327870 1442600 0 + 8513 799 7279 51712;51713;51714 32798 32798 1 SLYYYIQQDTK Unmodified 1420.6874 0.68744622 124 V9HW65;A0A024R5Z7;P07355;P07355-2;A6NMY6;B4DNH8 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.592 50.937 2 1.044E-58 19268 20181213_JW_Orientia_Karp_1_3 300.43 212.25 918450000 278080000 230050000 170010000 65733000 43797000 70864000 59254000 655870 8514 124 7280 51715;51716;51717;51718;51719;51720;51721;51722 32799;32800;32801 32801 3 SMAASGNLGHTPFVDEL Unmodified 1744.809 0.80903469 1621 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 By MS/MS By matching 1 1 61.004 61.378 2 0.0030382 25913 20181213_JW_Orientia_Karp_1_3 104.9 53.178 16723000 0 0 15821000 0 0 0 902360 0 8515 1621 7281 51723;51724 32802 32802 1 SMALTDEQK Oxidation (M) 1037.4699 0.46992522 1458 Karp_02603 yes yes 0 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 22.004 22.214 2 0.036819 4511 20181213_JW_Orientia_Karp_1_3 70.816 31.17 5628600 1376000 2047400 936350 0 722270 546630 0 0 8516 1458 7282 51725;51726;51727;51728;51729 32803 32803 1 SMEAEMIQLQEELAAAER 2 Oxidation (M) 2079.9453 0.94527018 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 56.867 57.172 2;3 5.212E-42 23445 20181213_JW_Orientia_Karp_1_2 241.39 115.55 181700000 54930000 29481000 47267000 11935000 16119000 11327000 0 10642000 8517 47 7283 51730;51731;51732;51733;51734;51735;51736;51737;51738;51739;51740;51741;51742;51743;51744 32804;32805;32806;32807;32808;32809;32810;32811;32812;32813 32805 51;52 10 SMEAEMIQLQEELAAAER Oxidation (M) 2063.9504 0.95035556 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1 1 64.754 64.94 2 3.4127E-54 29382 20181213_JW_Orientia_Karp_1_1 262.83 210.14 167890000 51384000 32783000 55074000 0 9478400 5285600 5014100 8868200 8518 47 7283 51745;51746;51747;51748;51749;51750;51751;51752;51753;51754 32814;32815;32816;32817;32818;32819;32820;32821;32822 32814 51;52 8 SMEAEMIQLQEELAAAER Unmodified 2047.9554 0.95544093 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 72.733 72.815 2 0.028307 33288 20181213_JW_Orientia_Karp_1_3 73.834 34.104 131080000 54023000 40512000 36541000 0 0 0 0 0 8519 47 7283 51755;51756;51757 32823 32823 1 SMGLPTSDEQK Oxidation (M) 1207.5391 0.53906742 2008 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 28.391 28.692 2 0.0064233 7691 20181213_JW_Orientia_Karp_1_1 99.815 48.749 15442000 8129400 1646200 2684100 0 1603300 634100 744540 0 8520 2008 7284 51758;51759;51760;51761;51762;51763 32824 32824 1532 1 SMLDQLGVPLYAVVK Oxidation (M) 1647.8906 0.89057948 1960 Q9BRX8-2;Q9BRX8 FAM213A Redox-regulatory protein FAM213A yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 70.333 70.443 2 1.5079E-05 31897 20181213_JW_Orientia_Karp_1_2 162.93 99.605 35747000 15802000 4009600 8516200 0 0 967880 6450600 0 8521 1960 7285 51764;51765;51766;51767;51768 32825;32826;32827;32828;32829 32826 1518 5 SMLDQLGVPLYAVVK Unmodified 1631.8957 0.89566485 1960 Q9BRX8-2;Q9BRX8 FAM213A Redox-regulatory protein FAM213A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 74.176 74.216 2 0.00049715 34145 20181213_JW_Orientia_Karp_1_3 141.38 89.607 48096000 19792000 10875000 17038000 0 0 0 0 391830 8522 1960 7285 51769;51770;51771;51772 32830;32831;32832 32832 3 SMLEVNYPMENGIVR Oxidation (M);Deamidation (NQ) 1767.8172 0.81715654 1721 P61160;F5H6T1;B4DWQ5;Q8IY98;B4DHK9;P61160-2 ACTR2 Actin-related protein 2 yes no 0 1 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 59.408 59.59 2 0.00068829 24778 20181213_JW_Orientia_Karp_1_3 141.58 88.889 42448000 19203000 10313000 12932000 0 0 0 0 0 8523 1721 7286 51773;51774;51775 32833;32834;32835 32835 1134 1349 3 SMLSAFLANTTNDNESSR Deamidation (NQ) 1957.8687 0.86873442 1350 Karp_01526 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 68.566 68.715 2 0.00011503 30672 20181213_JW_Orientia_Karp_1_2 143.94 68.524 23609000 11732000 4546000 7331500 0 0 0 0 0 8524 1350 7287 51776;51777;51778 32836;32837;32838;32839;32840;32841 32838 804;805 6 SMLSAFLANTTNDNESSR Oxidation (M) 1972.8796 0.87963345 1350 Karp_01526 yes yes 0 0 1 0 By MS/MS 1 54.094 54.444 2 0.0041663 21736 20181213_JW_Orientia_Karp_1_2 112.42 64.711 0 0 0 0 0 0 0 0 0 8525 1350 7287 51779 32842 32842 925 1 SMMGTGEASGEDR 2 Oxidation (M) 1358.5078 0.50784365 1404 Karp_02212 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 17.072 17.302 2 5.6159E-25 3099 20181213_JW_Orientia_Karp_1_1 230.95 209.1 4147000 1418400 686120 856410 486460 0 0 699630 0 8526 1404 7288 51780;51781;51782;51783;51784 32843;32844;32845;32846;32847;32848 32844 1012;1013 6 SMMGTGEASGEDR Oxidation (M) 1342.5129 0.51292903 1404 Karp_02212 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 21.746 22.104 2 2.1988E-07 4568 20181213_JW_Orientia_Karp_1_2 185.99 108.26 6177400 1862200 2089600 913910 327160 202850 0 565350 216360 8527 1404 7288 51785;51786;51787;51788;51789;51790;51791 32849;32850;32851;32852 32850 1012;1013 4 SMQDVVEDFK Oxidation (M) 1212.5333 0.53325376 811 CON__Q3KNV1;P08729;B3KY79 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 42.42 42.713 2 1.9057E-08 14193 20181213_JW_Orientia_Karp_1_3 195.36 113.08 123670000 44268000 32477000 25362000 3047900 3398500 4042900 11072000 0 + 8528 811 7289 51792;51793;51794;51795;51796;51797;51798 32853;32854;32855;32856;32857 32855 472 5 SMQDVVEDFK Unmodified 1196.5383 0.53833914 811 CON__Q3KNV1;P08729;B3KY79 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 53.124 53.486 2 0.00088106 20905 20181213_JW_Orientia_Karp_1_3 126.71 68.461 134250000 54834000 29762000 47403000 0 0 0 1965200 290850 + 8529 811 7289 51799;51800;51801;51802;51803 32858;32859;32860;32861 32860 4 SMSDTLADMLTR 2 Oxidation (M) 1371.601 0.60101575 1228 Karp_00895 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.948 45.274 2 1.8043E-11 16081 20181213_JW_Orientia_Karp_1_1 202.56 116.83 243750000 65358000 67479000 51651000 0 0 23246000 10941000 25077000 8530 1228 7290 51804;51805;51806;51807;51808;51809 32862;32863;32864;32865;32866;32867 32862 793;794 6 SMSDTLADMLTR Oxidation (M) 1355.6061 0.60610113 1228 Karp_00895 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 56.972 57.273 2 8.5723E-31 21699 20181213_JW_Orientia_Karp_2_3 248.88 159.8 487590000 77398000 118270000 154650000 33801000 39279000 38294000 0 25898000 8531 1228 7290 51810;51811;51812;51813;51814;51815;51816;51817;51818;51819;51820 32868;32869;32870;32871;32872;32873;32874;32875;32876;32877;32878;32879;32880 32877 793;794 13 SMSDTLADMLTR Unmodified 1339.6112 0.61118651 1228 Karp_00895 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 65.288 65.495 2 8.7097E-23 29009 20181213_JW_Orientia_Karp_1_1 229.82 149.65 318440000 118840000 74725000 80533000 3537900 22161000 9055600 9584700 0 8532 1228 7290 51821;51822;51823;51824;51825;51826;51827;51828 32881;32882;32883;32884;32885;32886;32887;32888 32881 8 SMTAVAIMILHEQGK Oxidation (M) 1643.8375 0.83749805 1167 Karp_00621 yes yes 0 0 1 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 2 1 1 1 50.183 50.483 2;3 0.00478 16963 20181213_JW_Orientia_Karp_3_1 103.88 73.488 50029000 17191000 2571800 14979000 9410200 4956000 0 922200 0 8533 1167 7291 51829;51830;51831;51832;51833;51834;51835 32889;32890;32891 32890 702 3 SMVAVMDSDTTGK Oxidation (M) 1356.5901 0.59011671 1552 P04632;K7EM73;K7EIV0;A0A075B7C0;U3KQE2;K7EKD8;U3KPR7 CAPNS1 Calpain small subunit 1 yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 2 1 1 1 34.461 34.851 2 0.00087289 10291 20181213_JW_Orientia_Karp_1_2 139.76 91.669 38380000 5666800 13784000 11789000 1752200 937060 0 3082400 1368000 8534 1552 7292 51836;51837;51838;51839;51840;51841;51842;51843;51844 32892;32893;32894;32895;32896 32892 1166 4 SMVPVQVQLDVPVVK Oxidation (M) 1652.9171 0.91712858 763 C9JRH2;C9JMJ4;C9J3R0;C9JQZ4;C9JW69;Q5T081;P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 63.075 63.339 2 0.033387 27001 20181213_JW_Orientia_Karp_1_3 70.889 44.846 16906000 5431500 3756900 7074100 0 0 0 0 643610 8535 763 7293 51845;51846;51847;51848 32897;32898 32898 2 SNADSLYIR Unmodified 1037.5142 0.5141733 1188 Karp_00703 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 39.604 39.837 2 0.0041145 12691 20181213_JW_Orientia_Karp_1_3 108.43 45.014 48948000 0 20647000 23998000 0 4303300 0 0 0 8536 1188 7294 51849;51850;51851;51852;51853;51854 32899;32900;32901;32902 32899 4 SNAENVIIIQNSDVAK Unmodified 1713.8897 0.88972785 1283 Karp_01146 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 49.722 50.095 2 1.8427E-37 17525 20181213_JW_Orientia_Karp_2_1 288.29 196.82 235980000 36646000 72746000 41608000 27799000 0 15363000 594530 41228000 8537 1283 7295 51855;51856;51857;51858;51859;51860;51861;51862 32903;32904;32905;32906;32907;32908;32909 32906 7 SNAENVIIIQNSDVAK Deamidation (NQ) 1714.8737 0.87374344 1283 Karp_01146 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.493 52.838 2 4.3116E-13 19012 20181213_JW_Orientia_Karp_2_1 198.48 119.45 89488000 21253000 18694000 23068000 5919300 8004000 4971500 7049200 529330 8538 1283 7295 51863;51864;51865;51866;51867;51868;51869;51870 32910;32911;32912;32913;32914;32915 32912 696;697;698 6 SNDIVLYMK Oxidation (M) 1097.5427 0.54269624 1199 Karp_00818 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 42.49 42.815 2 0.00011635 13617 20181213_JW_Orientia_Karp_2_1 186.76 139.02 111440000 68591000 0 21188000 2882100 0 0 18775000 0 8539 1199 7296 51871;51872;51873;51874;51875;51876 32916;32917;32918;32919;32920;32921 32919 763 6 SNDIVLYMK Unmodified 1081.5478 0.54778161 1199 Karp_00818 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 50.915 51.26 2 8.1019E-05 19437 20181213_JW_Orientia_Karp_1_3 190.62 135.85 88120000 15503000 27201000 14016000 13139000 5302900 8128500 4077000 752420 8540 1199 7296 51877;51878;51879;51880;51881;51882;51883;51884 32922;32923;32924;32925;32926;32927;32928 32924 7 SNDIVLYMK Deamidation (NQ) 1082.5318 0.5317972 1199 Karp_00818 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 57.686 58.018 2 0.0040415 24010 20181213_JW_Orientia_Karp_1_2 117.53 58.921 31454000 0 10494000 10723000 0 4797800 4066700 0 1372100 8541 1199 7296 51885;51886;51887;51888;51889;51890 32929;32930;32931;32932;32933 32929 613 5 SNDIVLYMK Oxidation (M);Deamidation (NQ) 1098.5267 0.52671182 1199 Karp_00818 yes yes 0 1 1 0 By MS/MS 1 44.892 45.543 2 0.03473 15057 20181213_JW_Orientia_Karp_3_1 81.525 42.22 0 0 0 0 0 0 0 0 0 8542 1199 7296 51891 32934 32934 613 763 1 SNDPVYHTLDDSVCDSSNSWYFIK Unmodified 2848.2286 0.22863891 1332 Karp_01370 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 65.042 65.225 3 0.00012541 28913 20181213_JW_Orientia_Karp_1_1 108.99 86.997 135370000 16817000 21305000 45714000 0 9767300 5738400 36024000 0 8543 1332 7297 51892;51893;51894;51895;51896;51897 32935;32936;32937;32938;32939;32940 32935 6 SNEDQSMGNWQIK Oxidation (M) 1551.6624 0.66237045 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;P02545-2;W8QEH3;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 38.306 38.638 2 1.8093E-45 12581 20181213_JW_Orientia_Karp_1_1 259.35 192.43 148650000 33246000 26790000 32540000 17662000 4863300 295220 27958000 5292600 8544 1543;1544;1851 7298 51898;51899;51900;51901;51902;51903;51904;51905;51906 32941;32942;32943;32944;32945;32946;32947;32948;32949;32950;32951 32941 1148 11 SNEDQSMGNWQIK Unmodified 1535.6675 0.66745583 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;P02545-2;W8QEH3;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.289 46.609 2 2.9601E-25 16356 20181213_JW_Orientia_Karp_1_3 257.54 201.53 75115000 17389000 19056000 21812000 4939200 1637000 3563200 1536200 5182200 8545 1543;1544;1851 7298 51907;51908;51909;51910;51911;51912;51913;51914 32952;32953;32954;32955;32956;32957 32954 6 SNEEHDLSQNIVSIISNDLNISK Deamidation (NQ) 2569.2508 0.25075456 1065 Karp_00013 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 68.485 68.712 3 0.022803 30970 20181213_JW_Orientia_Karp_1_1 65.438 34.372 30792000 13861000 0 5901700 2210600 2949500 0 3597600 2271200 8546 1065 7299 51915;51916;51917;51918;51919;51920 32958;32959 32958 400 1 SNELGDVGVHCVLQGLQTPSCK Unmodified 2397.1417 0.14167857 237 A0A024RC87;P13489;E9PMJ3;E9PLZ3;E9PIM9;E9PMN0;E9PIK5 RNH1 Ribonuclease inhibitor yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 56.885 57.267 3 0.012606 23915 20181213_JW_Orientia_Karp_1_1 74.703 43.73 20287000 5557300 0 6161200 1799600 0 0 2991500 3777200 8547 237 7300 51921;51922;51923;51924;51925 32960;32961 32960 2 SNGINLK Deamidation (NQ) 745.39702 0.39701828 1074 Karp_00050 yes yes 0 1 0 0 By MS/MS 1 30.963 31.161 2 0.040996 8423 20181213_JW_Orientia_Karp_1_3 90.777 6.418 0 0 0 0 0 0 0 0 0 8548 1074 7301 51926 32962 32962 1 SNIADIANIGNVR Unmodified 1355.7157 0.71572665 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 1 2 1 55.323 55.694 2 2.1461E-72 22146 20181213_JW_Orientia_Karp_1_3 289.22 210.96 2211800000 709690000 343600000 446490000 183330000 309030000 198410000 737770 20533000 8549 1349 7302 51927;51928;51929;51930;51931;51932;51933;51934;51935;51936 32963;32964;32965;32966;32967;32968;32969;32970 32965 7 SNITVIPQEPLLFDR Unmodified 1740.941 0.94103514 1070 Karp_00041 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 70.285 70.402 2 0.0088278 31575 20181213_JW_Orientia_Karp_1_3 99.011 40.787 40527000 12339000 8819100 6371400 0 3867500 2271100 6858600 0 8550 1070 7303 51937;51938;51939;51940;51941;51942 32971;32972;32973 32972 3 SNIVTVGDVEEINK Unmodified 1515.7781 0.77805214 1676 P46939;P46939-2;P46939-4 UTRN Utrophin yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 51.153 51.487 2 0.01344 19768 20181213_JW_Orientia_Karp_1_2 108.59 58.241 13632000 8162300 4631600 0 0 0 0 838280 0 8551 1676 7304 51943;51944;51945 32974 32974 1 SNLAISNYSK Unmodified 1095.556 0.55603811 1435 Karp_02393 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 36.326 36.689 2 0.0066306 11241 20181213_JW_Orientia_Karp_1_2 105.4 57.528 54196000 0 17540000 20121000 0 0 1957300 14577000 0 8552 1435 7305 51946;51947;51948;51949 32975;32976;32977 32975 3 SNLAVSSNTK Unmodified 1019.5247 0.52473799 1438 Karp_02403 yes yes 0 0 0 0 By MS/MS By matching 1 1 23.325 23.625 2 0.017133 5246 20181213_JW_Orientia_Karp_1_2 85.813 46.791 1895700 0 1289100 0 0 606610 0 0 0 8553 1438 7306 51950;51951 32978 32978 1 SNLVDNTNQVEVLQR Unmodified 1727.8802 0.8802258 633 H3BTB3;H3BMQ5;H3BN59;I3L0H8;B4DS24;Q2NL95;Q9HBZ9;Q7Z4W5;Q53G16;H3BQK0;Q9UMR2-2;Q9UMR2-4;Q9NUU7;Q9UMR2 DDX19A;DDX19B ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 49.52 49.81 2 0.0001961 19068 20181213_JW_Orientia_Karp_1_1 147.52 71.19 37573000 13765000 13384000 9233800 0 0 0 0 1190200 8554 633 7307 51952;51953;51954;51955 32979;32980 32979 2 SNLVRFCKHNDDAK Acetyl (Protein N-term);2 Deamidation (NQ) 1746.7995 0.79953264 1825 Q4W6X4 NF1 yes yes 1 2 0 2 By MS/MS 1 68.087 68.335 2 0.028148 27432 20181213_JW_Orientia_Karp_2_1 68.847 15.813 9724000 0 0 0 9724000 0 0 0 0 8555 1825 7308 51956 32981 32981 1170;1171 1 SNMGSVLVPR Oxidation (M) 1074.5492 0.5491786 1395 Karp_02151 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.312 36.596 2 1.5108E-06 11064 20181213_JW_Orientia_Karp_1_3 180.09 101.47 1073900000 251980000 190510000 320360000 0 106720000 29202000 175120000 0 8556 1395 7309 51957;51958;51959;51960;51961;51962;51963 32982;32983;32984;32985;32986;32987;32988 32984 994 7 SNMGSVLVPR Oxidation (M);Deamidation (NQ) 1075.5332 0.53319418 1395 Karp_02151 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 2 1 43.432 43.783 2 0.0020696 14570 20181213_JW_Orientia_Karp_2_3 118.03 53.769 52357000 16355000 12922000 12879000 0 0 2310500 7538700 352770 8557 1395 7309 51964;51965;51966;51967;51968;51969;51970;51971 32989;32990;32991;32992;32993;32994 32993 901 994 5 SNMGSVLVPR Unmodified 1058.5543 0.55426398 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 2 1 44.153 44.428 2 8.196E-25 15194 20181213_JW_Orientia_Karp_1_3 246.93 127.38 444500000 177920000 123910000 101950000 0 9487800 8413100 22821000 0 8558 1395 7309 51972;51973;51974;51975;51976;51977;51978;51979 32995;32996;32997;32998;32999 32997 5 SNMGSVLVPR Deamidation (NQ) 1059.5383 0.53827956 1395 Karp_02151 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 51.417 51.686 2 0.00078476 21704 20181213_JW_Orientia_Karp_1_2 136.96 80.148 106550000 8747700 14352000 76752000 1886800 0 4809200 0 0 8559 1395 7309 51980;51981;51982;51983;51984;51985;51986;51987;51988 33000;33001;33002;33003;33004;33005 33003 901 6 SNNFSLIGDPSIK Deamidation (NQ) 1391.6933 0.69325988 1252 Karp_00931 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 59.028 59.338 2 8.542E-05 25289 20181213_JW_Orientia_Karp_1_1 171.62 85.693 70877000 16911000 26153000 19354000 0 7988800 0 215730 254780 8560 1252 7310 51989;51990;51991;51992;51993;51994;51995;51996 33006;33007;33008;33009;33010;33011 33006 660;661 6 SNNFSLIGDPSIK Unmodified 1390.7092 0.70924429 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 56.024 56.54 2 1.1561E-24 21204 20181213_JW_Orientia_Karp_2_1 227.48 153.32 32726000 0 0 0 16616000 0 12068000 3018500 1024200 8561 1252 7310 51997;51998;51999;52000 33012;33013;33014;33015 33012 4 SNNLDQSNNESINSLIQTDK Unmodified 2233.0458 0.045847158 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS 1 52.87 53.068 2 0.00076704 20585 20181213_JW_Orientia_Karp_1_3 149.6 96.783 0 0 0 0 0 0 0 0 0 8562 1320 7311 52001 33016 33016 1 SNNLDQSNNESINSLIQTDK Deamidation (NQ) 2234.0299 0.029862743 1320 Karp_01282 yes yes 0 1 0 0 By matching By MS/MS By MS/MS 1 1 1 54.703 55.153 2 1.0929E-36 21903 20181213_JW_Orientia_Karp_1_3 244 177.98 9560400 0 7842100 0 1718300 0 0 0 0 8563 1320 7311 52002;52003;52004 33017;33018 33017 761;762 1 SNNNISTISSVTISELLDAGIHYGHK Deamidation (NQ) 2770.3774 0.37735205 1347 Karp_01523 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 72.613 72.626 4 9.033E-06 26753 20181213_JW_Orientia_Karp_3_1 115.99 86.029 139660000 30197000 0 0 0 21305000 30497000 57656000 0 8564 1347 7312 52005;52006;52007;52008 33019;33020;33021 33021 793;794;795 3 SNNNISTISSVTISELLDAGIHYGHK 2 Deamidation (NQ) 2771.3614 0.36136764 1347 Karp_01523 yes yes 0 2 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 73.192 73.232 4 0.0032104 27005 20181213_JW_Orientia_Karp_3_1 61.16 28.458 43405000 8142600 6374500 0 0 7566300 4096400 17226000 0 8565 1347 7312 52009;52010;52011;52012;52013 33022 33022 793;794;795 1 SNPSAVAGNETPGASTK Unmodified 1586.7536 0.7536283 64 B7Z954;A0A024R233;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-7 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 29.911 30.094 2 3.0218E-06 8360 20181213_JW_Orientia_Karp_1_1 152.16 110.76 2297100 1106700 652880 537510 0 0 0 0 0 8566 64 7313 52014;52015;52016 33023 33023 1 SNQQLENDLNLMDIK Unmodified 1773.8567 0.85671317 235 A4QPB0;A0A024RC65;P46940;Q6P1N4;H0YLE8;B4E2M0;Q96PA3 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 61.183 61.536 2 0.0045444 21412 20181213_JW_Orientia_Karp_3_1 109.6 65.29 23512000 11369000 9737700 0 0 0 0 1371200 1034500 8567 235 7314 52017;52018;52019;52020 33024;33025;33026 33026 3 SNSEFFDLMNS Oxidation (M) 1305.5183 0.51833198 1333 Karp_01373 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 66.34 66.542 2 0.00098751 29023 20181213_JW_Orientia_Karp_1_3 126.66 98.454 21934000 7372900 2264700 4968800 0 3780200 2649900 77963 819550 8568 1333 7315 52021;52022;52023;52024;52025;52026;52027;52028 33027;33028;33029;33030;33031 33028 891 5 SNSIQQMEQLNRR Oxidation (M);3 Deamidation (NQ) 1621.7366 0.73659803 1996 Q9P2P5-2;Q9P2P5 HECW2 E3 ubiquitin-protein ligase HECW2 yes no 0 3 1 1 By MS/MS 1 46.893 47.044 3 0.03761 15726 20181213_JW_Orientia_Karp_2_2 41.242 9.5342 0 0 0 0 0 0 0 0 0 8569 1996 7316 52029 33032 33032 2099;2100;2101 1 SNTDQTIVLPEVDLLGQYDNR Unmodified 2389.1761 0.17613305 1314 Karp_01269 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 73.437 73.457 3 0.017362 33939 20181213_JW_Orientia_Karp_1_1 52.09 19.525 25257000 16897000 0 0 0 0 3346200 0 5013700 8570 1314 7317 52030;52031;52032 33033 33033 1 SNTEAQEYLK Unmodified 1181.5564 0.55643205 1256 Karp_00936 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 33.559 33.833 2 0.00049581 10244 20181213_JW_Orientia_Karp_1_1 134.57 83.23 153450000 40010000 37303000 57950000 18188000 0 0 0 0 8571 1256 7318 52033;52034;52035;52036 33034 33034 1 SNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETR Unmodified 4243.977 0.97700309 1593 P13639;Q8TA90;B4DPU3 EEF2 Elongation factor 2 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 71.194 71.315 4 0.01679 32299 20181213_JW_Orientia_Karp_1_3 39.516 22.066 47906000 20910000 11420000 12257000 2288500 0 0 0 1030800 8572 1593 7319 52037;52038;52039;52040;52041 33035 33035 1 SNTIAAASTLDR Unmodified 1218.6204 0.62042929 1226 Karp_00893 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 2 1 1 2 1 38.367 38.733 2 3.3032E-05 12680 20181213_JW_Orientia_Karp_1_1 171.49 107.92 436240000 112150000 111650000 92128000 13107000 11972000 3128800 85754000 6352100 8573 1226 7320 52042;52043;52044;52045;52046;52047;52048;52049;52050;52051;52052 33036;33037;33038;33039;33040;33041;33042;33043 33037 8 SNTSPEELGPLANQLTSDYGR Unmodified 2248.0608 0.060768941 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 61.885 62.068 2 1.226E-12 26721 20181213_JW_Orientia_Karp_1_2 215.93 184.45 30489000 11413000 9179000 9897200 0 0 0 0 0 8574 2016 7321 52053;52054;52055 33044;33045;33046;33047 33045 4 SNVLLVGTAADNPPYEFFK Unmodified 2081.047 0.046956778 1440 Karp_02409 yes yes 0 0 0 0 By MS/MS 1 72.171 72.269 2 0.0014941 32795 20181213_JW_Orientia_Karp_1_3 107.46 50.29 17519000 0 0 17519000 0 0 0 0 0 8575 1440 7322 52056 33048 33048 1 SNVSDAVAQSTR Unmodified 1233.5949 0.59494282 1715 V9HWK1;Q53HE2;P60174-1;P60174;B4DUI5;P60174-4;Q2QD09 HEL-S-49;TPI1 Triosephosphate isomerase yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 30.848 31.211 2 1.2522E-05 8110 20181213_JW_Orientia_Karp_3_1 176.87 103.99 48268000 10839000 20127000 0 0 3677800 0 13624000 0 8576 1715 7323 52057;52058;52059;52060 33049;33050;33051 33050 3 SNVTNFTPTVEVTEQQTK Unmodified 2021.9906 0.99056411 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.867 51.175 2 5.9796E-84 18080 20181213_JW_Orientia_Karp_2_1 335.25 240.72 303480000 67546000 76890000 82401000 16920000 19701000 10925000 29094000 0 8577 1366 7324 52061;52062;52063;52064;52065;52066;52067;52068 33052;33053;33054;33055;33056;33057;33058;33059;33060;33061;33062 33057 11 SNYNTCINQK Unmodified 1240.5506 0.55063516 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS 2 1 25.975 26.149 2 0.0055839 6326 20181213_JW_Orientia_Karp_1_3 101.46 37.253 1840500 0 988070 852410 0 0 0 0 0 8578 1170 7325 52069;52070;52071 33063;33064 33064 2 SNYSVSLVGPAPWGFR Acetyl (Protein N-term) 1777.8788 0.87876924 257;732 A0A024RDE8;Q96HC4;Q96HC4-7;Q96HC4-4;Q96HC4-6;Q96HC4-3;Q96HC4-2;D6RAA1;D6RGG6;Q96HC4-5;B7Z8X5 PDLIM5 PDZ and LIM domain protein 5 no no 1 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 76.411 76.386 2 0.0083881 35585 20181213_JW_Orientia_Karp_1_3 96.756 55.276 20423000 7753500 0 5125100 0 1468100 0 6076100 0 8579 257;732 7326 52072;52073;52074;52075 33065 33065 1 SPADPTDLGGQTSPR Unmodified 1497.7059 0.70594983 647 Q9BT70;B4DVR4 SORBS3 yes no 0 0 0 0 By MS/MS By matching 1 1 39.302 39.428 2 0.036096 13060 20181213_JW_Orientia_Karp_1_1 72.705 46.662 6327400 5468100 0 0 0 0 859310 0 0 8580 647 7327 52076;52077 33066 33066 1 SPAGLQVLNDYLADK Unmodified 1602.8253 0.82533668 80 A0A024R3W7;P24534;C9JZW3;F8WF65;F2Z2G2 EEF1B2 Elongation factor 1-beta yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 64.844 65.052 2 1.1783E-20 25385 20181213_JW_Orientia_Karp_2_2 225.33 169.29 194580000 42681000 40608000 48575000 0 27128000 22247000 4569700 8771900 8581 80 7328 52078;52079;52080;52081;52082;52083;52084;52085;52086 33067;33068;33069;33070;33071;33072;33073;33074 33070 8 SPAGLQVLNDYLADK Deamidation (NQ) 1603.8094 0.80935227 80 A0A024R3W7;P24534;C9JZW3;F8WF65;F2Z2G2 EEF1B2 Elongation factor 1-beta yes no 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 61.489 61.841 2 1.1274E-12 23875 20181213_JW_Orientia_Karp_2_2 195.87 134.28 47169000 0 0 18033000 3119600 11052000 10008000 2196600 2760000 8582 80 7328 52087;52088;52089;52090;52091;52092 33075;33076;33077;33078;33079 33076 36 5 SPALNGNPFAK Deamidation (NQ) 1115.5611 0.56112349 1092 Karp_00241 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 3 2 3 1 2 47.4 47.718 2 0.00065419 16946 20181213_JW_Orientia_Karp_2_2 147.4 69.07 699120000 223750000 46670000 33560000 141610000 67104000 68535000 660330 117230000 8583 1092 7329 52093;52094;52095;52096;52097;52098;52099;52100;52101;52102;52103;52104;52105;52106;52107;52108;52109;52110 33080;33081;33082;33083;33084;33085;33086;33087;33088 33084 440 8 SPAPPLLHVAALGQK Unmodified 1497.8667 0.86674799 529 B3KTJ9;Q8N163-2;Q8N163;H0YC69;E5RGU7;E5RFJ3;H0YC58 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 50.707 50.94 3 0.019779 19214 20181213_JW_Orientia_Karp_1_3 64.798 42.886 21503000 0 14720000 5455500 0 1326800 0 0 0 8584 529 7330 52111;52112;52113 33089;33090;33091 33091 3 SPASDTYIVFGEAK Unmodified 1483.7195 0.71947463 213 F8VZJ2;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3-2;E9PAV3;F8W1N5;F8VNW4;B4DDI8 NACA;hCG_2016482 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 54.464 54.837 2 8.8222E-73 22371 20181213_JW_Orientia_Karp_1_1 289.59 237.11 426390000 79679000 63058000 131340000 69562000 0 77669000 229080 4857500 8585 213 7331 52114;52115;52116;52117;52118;52119;52120;52121 33092;33093;33094;33095;33096;33097 33092 6 SPAVATSTAAPPPPSSPLPSK Unmodified 1959.0313 0.031306713 666 B4DZJ6;F8W726;B4DYY5;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 47.338 47.697 2 2.605E-08 17245 20181213_JW_Orientia_Karp_1_2 162.46 106.24 71802000 14773000 15874000 11490000 12768000 6685200 0 1457800 8754000 8586 666 7332 52122;52123;52124;52125;52126;52127;52128 33098;33099;33100;33101;33102 33099 5 SPDLEPVLR Unmodified 1024.5553 0.55530983 788 CON__P01045-1;CON__Q2KJ62;CON__P01044-1 yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 49.089 49.441 2 0.0032813 16300 20181213_JW_Orientia_Karp_3_2 112.41 72.765 25414000 0 7106900 4541800 5560300 2548300 3013300 0 2643400 + 8587 788 7333 52129;52130;52131;52132;52133;52134 33103 33103 1 SPDLLMYQGPPDTAEIIK Unmodified 1986.9972 0.99722939 1753 P82909 MRPS36 28S ribosomal protein S36, mitochondrial yes yes 0 0 0 0 By MS/MS 1 68.59 68.59 2 0.024729 30867 20181213_JW_Orientia_Karp_1_1 90.412 47.382 0 0 0 0 0 0 0 0 0 8588 1753 7334 52135 33104 33104 1 SPDVGLYGVIPECGETYHSDLAEAK Unmodified 2706.2483 0.24831171 235 A4QPB0;A0A024RC65;P46940;Q6P1N4;H0YLE8;B4E2M0 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By matching 1 1 59.636 59.811 3 0.00067982 25645 20181213_JW_Orientia_Karp_1_1 88.872 60.459 20262000 16426000 3836500 0 0 0 0 0 0 8589 235 7335 52136;52137 33105 33105 1 SPEALQCYAESLAIENASSLTK Unmodified 2381.1421 0.14205573 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS 1 69.841 69.939 2 0.00064327 31290 20181213_JW_Orientia_Karp_1_3 110.12 83.094 2149800 0 0 2149800 0 0 0 0 0 8590 1333 7336 52138 33106;33107 33106 2 SPEEGAETPVYLALLPPDAEGPHGQFVSEK Unmodified 3163.535 0.53497491 1603 P16152 CBR1 Carbonyl reductase [NADPH] 1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.807 68.048 3 5.8013E-15 24026 20181213_JW_Orientia_Karp_3_1 139.75 114.42 68225000 17896000 12612000 23562000 0 0 0 7692600 6461700 8591 1603 7337 52139;52140;52141;52142;52143 33108;33109;33110;33111;33112 33111 5 SPEIITQELWMEVLK Oxidation (M) 1830.9437 0.94373726 1207 Karp_00849 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 73.958 73.974 2 2.3379E-13 33985 20181213_JW_Orientia_Karp_1_3 203.87 162.82 49492000 11904000 11530000 18043000 215270 0 1702500 6098200 0 8592 1207 7338 52144;52145;52146;52147;52148;52149 33113;33114;33115;33116 33115 771 4 SPEIITQELWMEVLK Unmodified 1814.9488 0.94882264 1207 Karp_00849 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 74.817 74.868 2 0.00018578 34440 20181213_JW_Orientia_Karp_1_3 147.73 95.891 27708000 0 4199400 12001000 1567600 0 0 8474600 1465300 8593 1207 7338 52150;52151;52152;52153;52154 33117;33118 33117 2 SPFEVQVGPEAGMQK Unmodified 1602.7712 0.77119262 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 52.964 53.305 2 3.2325E-37 20986 20181213_JW_Orientia_Karp_1_2 244.73 153.46 194040000 54576000 44040000 88119000 5530700 0 0 0 1776100 8594 1520 7339 52155;52156;52157;52158;52159 33119;33120;33121;33122;33123;33124;33125 33121 7 SPFEVSVDK Unmodified 1006.4971 0.49712625 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS 1 1 44.126 44.476 2 0.001599 15392 20181213_JW_Orientia_Karp_1_2 123.21 69.715 42489000 0 42489000 0 0 0 0 0 0 8595 1520 7340 52160;52161 33126;33127 33126 2 SPFEVYVDK Unmodified 1082.5284 0.52842638 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 49.89 50.159 2 0.0007796 18835 20181213_JW_Orientia_Karp_1_2 146.79 94.383 231970000 72096000 87114000 51472000 13663000 0 7625100 0 0 8596 1615 7341 52162;52163;52164;52165;52166 33128;33129;33130;33131 33129 4 SPFSVAVSPSLDLSK Unmodified 1532.8086 0.80862399 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 63.845 64.097 2 0.0010372 27965 20181213_JW_Orientia_Karp_1_2 132.59 63.694 345540000 199640000 111870000 0 0 0 17598000 2566300 13865000 8597 1615 7342 52167;52168;52169;52170;52171 33132 33132 1 SPFTVGVAAPLDLSK Unmodified 1500.8188 0.81879474 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 66.243 66.444 2 4.0429E-13 29587 20181213_JW_Orientia_Karp_1_1 200.93 150.9 351090000 88261000 100390000 77700000 0 17205000 17116000 8566400 41856000 8598 1520 7343 52172;52173;52174;52175;52176;52177;52178 33133;33134;33135;33136;33137 33133 5 SPFVVQVGEACNPNACR Unmodified 1903.8669 0.8669007 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 51.165 51.491 2 8.0513E-12 19648 20181213_JW_Orientia_Karp_1_3 188.09 120.31 52449000 6190900 25759000 11149000 0 2351300 0 5805300 1192900 8599 1520 7344 52179;52180;52181;52182;52183;52184 33138;33139;33140;33141;33142 33139 5 SPGAPGPLTLK Unmodified 1036.5917 0.59169534 1812 Q15942;H0Y2Y8;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;B4DQR8;C9JJK5 ZYX Zyxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.818 44.148 2 0.00047484 15207 20181213_JW_Orientia_Karp_1_2 142.36 85.64 217810000 58377000 49634000 43789000 18910000 22602000 0 24353000 145410 8600 1812 7345 52185;52186;52187;52188;52189;52190;52191 33143;33144;33145;33146;33147;33148 33144 6 SPGVFFDHDDGK Unmodified 1319.5782 0.57823012 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 40.721 41.021 3 0.0041413 12694 20181213_JW_Orientia_Karp_2_1 110.93 75.926 40281000 18197000 6062200 7260300 2559600 2590600 0 3611300 0 8601 1170 7346 52192;52193;52194;52195;52196;52197 33149;33150;33151;33152;33153 33152 5 SPIIMVNIHK Oxidation (M) 1166.6482 0.64816436 1320 Karp_01282 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 40.213 40.543 2;3 0.0001406 12474 20181213_JW_Orientia_Karp_2_1 145.9 108.19 297890000 85309000 47292000 67526000 50254000 23629000 0 21016000 2867200 8602 1320 7347 52198;52199;52200;52201;52202;52203;52204;52205;52206;52207;52208;52209;52210;52211;52212 33154;33155;33156;33157;33158;33159;33160 33157 883 7 SPIIMVNIHK Unmodified 1150.6532 0.65324974 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 44.111 44.427 2;3 5.851E-06 15162 20181213_JW_Orientia_Karp_1_3 171.99 134.34 247700000 62201000 108490000 51744000 935860 7263000 6093400 10967000 0 8603 1320 7347 52213;52214;52215;52216;52217;52218;52219;52220;52221;52222;52223;52224;52225 33161;33162;33163;33164;33165;33166 33163 6 SPLAQMEEER Oxidation (M) 1204.5394 0.53940177 2;1842 B4DNE4;G3V1Q4;B4DPQ6;A0A023T695;B4DUD6;Q8TC62;Q3LIE9;A4GYY8;E7ES33;E7EPK1;A8K3D0;Q16181-2;Q16181;H0Y3Y4;A4D1Y2;Q59EY4 SEPT7;Nbla02942;DKFZp686F17268;LOC392884 Septin-7 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 26.849 27.207 2 0.0008652 6665 20181213_JW_Orientia_Karp_1_3 123.51 63.494 24894000 4642400 5404400 6699000 699850 1653200 806780 3611100 1377500 8604 2;1842 7348 52226;52227;52228;52229;52230;52231;52232;52233 33167;33168;33169;33170;33171 33169 1 5 SPLAQMEEER Unmodified 1188.5445 0.54448715 2;1842 B4DNE4;G3V1Q4;B4DPQ6;A0A023T695;B4DUD6;Q8TC62;Q3LIE9;A4GYY8;E7ES33;E7EPK1;A8K3D0;Q16181-2;Q16181;H0Y3Y4;A4D1Y2;Q59EY4 SEPT7;Nbla02942;DKFZp686F17268;LOC392884 Septin-7 no no 0 0 0 0 By MS/MS By MS/MS 1 1 38.603 38.702 2 0.00379 12161 20181213_JW_Orientia_Karp_1_3 106.4 71.131 11270000 7170300 0 4099700 0 0 0 0 0 8605 2;1842 7348 52234;52235 33172;33173 33173 2 SPLEGDYSDILGLLPYGYHK Unmodified 2236.1052 0.10519994 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 72.97 73.028 3 4.6515E-22 33670 20181213_JW_Orientia_Karp_1_2 199.33 126.19 638160000 121580000 69677000 141200000 0 37887000 59502000 194140000 14178000 8606 1396 7349 52236;52237;52238;52239;52240;52241;52242 33174;33175;33176;33177;33178;33179;33180 33175 7 SPLFVGK Unmodified 746.43268 0.4326755 803 CON__P34955 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 40.076 40.376 2 0.011697 11980 20181213_JW_Orientia_Karp_2_2 118.69 69.926 240100000 56953000 28861000 16884000 33082000 34613000 0 69707000 0 + 8607 803 7350 52243;52244;52245;52246;52247;52248 33181;33182;33183;33184;33185 33184 5 SPLQSVVVR Unmodified 983.57638 0.57637963 2009 Q9Y2W1;Q7Z5U1;Q05D20;Q6P0P7;Q6PJV4 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 0 0 0 0 By MS/MS 1 42.102 42.753 2 0.0051389 13694 20181213_JW_Orientia_Karp_3_1 156.35 86.079 0 0 0 0 0 0 0 0 0 8608 2009 7351 52249 33186 33186 1 SPNDLLALFR Unmodified 1144.6241 0.6240581 1927 Q92626;H7C1W1;Q92626-2 PXDN Peroxidasin homolog yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 72.232 72.335 2 1.5726E-06 33273 20181213_JW_Orientia_Karp_1_1 182.16 115.16 38618000 18337000 0 0 0 4635600 0 14138000 1507600 8609 1927 7352 52250;52251;52252;52253;52254;52255 33187;33188;33189;33190;33191 33187 5 SPNELVDDLFK Unmodified 1275.6347 0.63468237 1826 Q53FF5;Q53FE8;Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 65.372 65.61 2 0.039555 28777 20181213_JW_Orientia_Karp_1_2 75.566 6.7196 10425000 0 3489400 2463100 0 2606600 0 1865700 0 8610 1826 7353 52256;52257;52258;52259 33192 33192 0 SPNQNVQQAAAGALR Unmodified 1523.7805 0.78045218 175 A0A024R952;Q13835-2;Q13835 PKP1 Plakophilin-1 yes no 0 0 0 0 By MS/MS 1 39.002 39.002 2 0.0046702 12858 20181213_JW_Orientia_Karp_1_1 138.24 89.495 0 0 0 0 0 0 0 0 0 8611 175 7354 52260 33193 33193 1 SPNTVADGLSALNLSER Unmodified 1742.8799 0.87989145 1189 Karp_00704 yes yes 0 0 0 0 By MS/MS 1 59.993 60.191 2 0.0060713 25168 20181213_JW_Orientia_Karp_1_3 113.65 49.43 0 0 0 0 0 0 0 0 0 8612 1189 7355 52261 33194 33194 1 SPQISMSDIDLNLK Oxidation (M) 1575.7814 0.78142296 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 53.932 54.254 2 0.0014779 20063 20181213_JW_Orientia_Karp_2_3 127.79 79.949 132530000 38187000 21314000 22729000 15913000 17897000 13099000 3395100 0 8613 1782 7356 52262;52263;52264;52265;52266;52267;52268 33195;33196;33197;33198;33199;33200;33201 33199 1429 7 SPQISMSDIDLNLK Unmodified 1559.7865 0.78650834 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.606 62.864 2 7.7908E-18 26737 20181213_JW_Orientia_Karp_1_3 221.09 164.46 89723000 33506000 14850000 26142000 2067200 6612300 3298300 0 3247000 8614 1782 7356 52269;52270;52271;52272;52273;52274;52275 33202;33203;33204;33205;33206;33207;33208;33209 33205 8 SPSDSSTASTPVAEQIER Unmodified 1860.8701 0.87011462 1815 Q16643;Q16643-3;Q16643-2;B7Z2Z0;D6R9Q9;B3KSQ7 DBN1 Drebrin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 41.722 42.1 2 0.0042382 13210 20181213_JW_Orientia_Karp_2_1 148.52 88.03 11275000 0 0 6478800 0 1400900 0 2745600 649190 8615 1815 7357 52276;52277;52278;52279;52280;52281 33210;33211;33212;33213 33211 3 SPSEESAPTTSPESVSGSVPSSGSSGR Unmodified 2549.1365 0.13651266 148 A8K1J3;A0A024R7G8;P54725-2;P54725-3;P54725 RAD23A UV excision repair protein RAD23 homolog A yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 40.768 41.1 3 0.00224 13390 20181213_JW_Orientia_Karp_1_3 65.213 43.815 10706000 0 3579400 4936800 2190200 0 0 0 0 8616 148 7358 52282;52283;52284 33214;33215;33216 33216 3 SPSFLLPVNYK Unmodified 1263.6863 0.68632401 1425 Karp_02312 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 61.404 61.716 2 0.0067885 26541 20181213_JW_Orientia_Karp_1_2 109.44 79.772 15395000 7834200 3980100 0 0 0 1856200 113210 1611500 8617 1425 7359 52285;52286;52287;52288;52289 33217;33218 33217 2 SPSGGAAGPLLTPSQSLDGSR Unmodified 1953.9756 0.97558275 548 B3KY04;Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 52.191 52.541 2 4.4585E-08 20345 20181213_JW_Orientia_Karp_1_3 160.79 119.74 68156000 14595000 24864000 22802000 2188600 0 0 3706200 0 8618 548 7360 52290;52291;52292;52293;52294 33219;33220;33221;33222 33221 4 SPSIFEVIPILGK Unmodified 1398.8123 0.8122528 1383 Karp_02122 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 74.888 74.915 2 4.3103E-05 34596 20181213_JW_Orientia_Karp_1_3 172.27 111.88 49654000 19389000 0 16143000 0 4081000 1879500 7013000 1148600 8619 1383 7361 52295;52296;52297;52298;52299;52300;52301 33223;33224;33225;33226 33225 4 SPSLDVTVPEAELNLETPEISVGGK Unmodified 2580.317 0.31704321 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 72.43 72.505 2;3 0.0013638 26694 20181213_JW_Orientia_Karp_3_1 93.342 60.812 99193000 0 19372000 29604000 12087000 16404000 9061000 12666000 0 8620 1782 7362 52302;52303;52304;52305;52306;52307 33227;33228 33228 2 SPSTLLPK Unmodified 841.49092 0.49091866 879 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;A0A024R2V0;Q86Y04;P27816-4;H0Y2V1;H7C4C5;F8W9U4;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.899 38.099 2 0.0042016 11471 20181213_JW_Orientia_Karp_2_3 138.83 56.52 20401000 7457400 6916200 4226100 0 0 1801500 0 0 8621 879 7363 52308;52309;52310;52311;52312;52313;52314 33229;33230;33231;33232 33231 4 SPSWQRPNQGVPSTGR Unmodified 1752.8656 0.86557879 257;732 A0A024RDE8;Q96HC4;F5H7Y0;Q96HC4-7;Q96HC4-4;Q96HC4-6;H0Y8Y3;B7Z8X5;Q59FC9 PDLIM5 PDZ and LIM domain protein 5 no no 0 0 0 1 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 33.535 33.897 3 0.015998 9559 20181213_JW_Orientia_Karp_3_1 99.055 52.375 158550000 65891000 27107000 45959000 0 0 0 18141000 1454400 8622 257;732 7364 52315;52316;52317;52318;52319 33233;33234 33234 2 SPTTLSSDLK Unmodified 1047.5448 0.54480473 1193 Karp_00798 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 35.663 36 2 0.0020926 10830 20181213_JW_Orientia_Karp_1_3 114.89 40.64 59446000 0 3649100 44060000 8357500 0 3378600 0 0 8623 1193 7365 52320;52321;52322;52323 33235;33236;33237 33235 3 SPVCLTVPEGSMDIR Unmodified 1659.796 0.79602716 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.537 58.83 2 0.00051284 24594 20181213_JW_Orientia_Karp_1_2 182.41 137.55 251740000 67602000 42337000 105080000 11463000 11888000 9546100 3822300 0 8624 1251 7366 52324;52325;52326;52327;52328;52329;52330 33238;33239;33240;33241;33242;33243;33244 33239 7 SPVCLTVPEGSMDIR Oxidation (M) 1675.7909 0.79094179 1251 Karp_00928 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 51.724 52.214 2 2.7727E-06 18142 20181213_JW_Orientia_Karp_3_1 172.92 128.5 139820000 0 0 0 31834000 34112000 0 68068000 5809200 8625 1251 7366 52331;52332;52333;52334 33245;33246;33247 33246 813 3 SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLAAAAGSEDAEK Unmodified 4348.0956 0.095597903 1939 Q96GD7 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 1 55.956 56.327 3;4 0.0015684 21117 20181213_JW_Orientia_Karp_2_1 36.907 16.354 155380000 0 0 0 63213000 60372000 31793000 0 0 8626 1939 7367 52335;52336;52337;52338;52339 33248;33249;33250;33251 33248 4 SPVISIDPPSSTVQQGQDASFK Unmodified 2287.1332 0.1332056 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 57.589 57.835 2;3 5.8828E-18 23872 20181213_JW_Orientia_Karp_1_2 191.44 159.15 138200000 65646000 23261000 32776000 0 8244300 4629300 0 3639600 8627 195 7368 52340;52341;52342;52343;52344;52345;52346;52347;52348 33252;33253;33254;33255;33256 33253 5 SPWDNMDDAK Oxidation (M) 1193.4659 0.46590248 1105 Karp_00283 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 35.042 35.419 2 0.0025828 10893 20181213_JW_Orientia_Karp_1_1 109.83 87.25 214590000 58229000 0 67889000 10862000 34429000 0 25409000 17771000 8628 1105 7369 52349;52350;52351;52352;52353;52354;52355 33257;33258;33259;33260;33261;33262 33257 623 6 SPWDNMDDAK Unmodified 1177.471 0.47098786 1105 Karp_00283 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.768 44.95 2 0.00884 16045 20181213_JW_Orientia_Karp_1_1 95.483 66.334 110620000 40300000 40901000 29418000 0 0 0 0 0 8629 1105 7369 52356;52357;52358 33263;33264;33265 33263 3 SPYLYPLYGLGELPQGFAR Unmodified 2140.0993 0.099326699 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q5SX87;B4DHX4;P31150;Q5SX91 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 74.155 74.171 2 0.0017429 34425 20181213_JW_Orientia_Karp_1_1 121.42 86.733 61003000 17103000 16573000 19680000 1476800 0 1025700 5145400 0 8630 596 7370 52359;52360;52361;52362;52363;52364 33266;33267;33268 33266 3 SPYQEFTDHLVK Unmodified 1462.7092 0.70924429 973 H0YEN5;Q8J014;Q8N5L9;Q3KQT6;P15880;E9PQD7;O60249;Q8NI62;Q9BSW5;A4D0Y7 RPS2;rps2;OK/KNS-cl.6;LOC392781 40S ribosomal protein S2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 47.743 47.993 3 0.00049368 17495 20181213_JW_Orientia_Karp_1_2 179.67 118.43 155340000 45418000 66546000 22493000 11924000 6064300 2894000 0 0 8631 973 7371 52365;52366;52367;52368;52369;52370 33269;33270;33271;33272;33273 33270 5 SPYTVTVGQACNPSACR Unmodified 1866.8353 0.83526622 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 42.392 42.694 2 1.2062E-100 14192 20181213_JW_Orientia_Karp_1_3 304.08 223.35 153880000 29191000 18809000 29135000 0 15101000 30786000 20895000 9960500 8632 1615 7372 52371;52372;52373;52374;52375;52376;52377 33274;33275;33276 33275 3 SQAPGQPGASQWGSR Unmodified 1512.707 0.70695288 1056 K7EQ02;Q5IRN4;Q96EP5-2;Q96EP5 DAZAP1;MEF2D/DAZAP1 fusion DAZ-associated protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 33.924 34.257 2 3.2526E-05 9870 20181213_JW_Orientia_Karp_1_3 160.46 104.74 62834000 19667000 16215000 14340000 2960000 0 3970100 5682700 0 8633 1056 7373 52378;52379;52380;52381;52382;52383;52384;52385;52386 33277;33278;33279;33280;33281;33282;33283 33278 7 SQDGASQFQEVIR Acetyl (Protein N-term) 1505.711 0.71103521 775 C9JWG0;C9JVG3;C9JNZ1;Q16851-2;C9J3M0;F2Z3P4;F8WC70;F2Z3H1;C9JTZ5;C9JUW1 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 1 0 0 0 By matching By MS/MS By matching 1 1 1 59.829 60.182 2 0.020345 25151 20181213_JW_Orientia_Karp_1_3 84.734 37.473 7519300 0 3161700 4022300 0 0 0 0 335260 8634 775 7374 52387;52388;52389 33284 33284 1 SQEADVQDWEFR Unmodified 1508.6532 0.65318598 106 A0A024R542;Q9C0C2;B3KXS7;Q9C0C2-2 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 52.532 53.003 2 0.0028371 20612 20181213_JW_Orientia_Karp_1_3 116.74 66.703 14818000 0 4045100 7030500 2215800 0 0 1232500 294530 8635 106 7375 52390;52391;52392;52393;52394 33285;33286 33286 2 SQELEWYPK Unmodified 1178.5608 0.56078914 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 49.276 49.628 2 0.0014621 18479 20181213_JW_Orientia_Karp_1_2 125.16 75.742 74520000 0 21184000 18702000 14456000 4937300 10094000 0 5147000 8636 1149 7376 52395;52396;52397;52398;52399;52400;52401;52402 33287;33288;33289;33290;33291;33292;33293;33294;33295 33289 9 SQEQLAAELAEYTAK Unmodified 1650.8101 0.81008055 457 E7EQR4;Q6NUR7;B2R6J2;P15311;B7Z437;B7Z5V2;V9HW42;B7Z9R6 EZR;HEL-S-105 Ezrin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 57.49 57.836 2;3 5.426E-06 24361 20181213_JW_Orientia_Karp_1_1 192.39 144.3 118900000 45030000 23493000 26706000 6513800 3943300 7498300 115430 5597700 8637 457 7377 52403;52404;52405;52406;52407;52408;52409;52410;52411 33296;33297;33298;33299;33300;33301 33296 5 SQESGYYDR Unmodified 1103.452 0.45196697 418 D6REM6;A8MXP9;P43243;D6R991;Q68D11 MATR3;DKFZp686K23100 Matrin-3 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 24.023 24.386 2 0.010936 5468 20181213_JW_Orientia_Karp_1_3 92.239 65.855 2323800 0 0 1376400 199690 221860 0 525840 0 8638 418 7378 52412;52413;52414;52415 33302 33302 1 SQFQAGQIIR Unmodified 1146.6146 0.61455605 1286 Karp_01157 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 42.702 43.031 2 0.0046058 14378 20181213_JW_Orientia_Karp_1_3 103.26 55.296 33593000 12097000 9521100 9347700 817390 0 0 1810100 0 8639 1286 7379 52416;52417;52418;52419;52420 33303 33303 1 SQGDSNPAAIPHAAEDIQGDDR Acetyl (Protein N-term) 2305.0207 0.02069504 1748 V9HW44;P68402;P68402-3;P68402-2;P68402-4 HEL-S-303;PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 2 1 50.003 50.314 2;3 1.7703E-13 18885 20181213_JW_Orientia_Karp_1_2 214.34 180.75 107520000 19694000 45208000 22790000 0 7667700 7788900 4374500 0 8640 1748 7380 52421;52422;52423;52424;52425;52426;52427;52428;52429;52430 33304;33305;33306;33307;33308;33309 33305 6 SQIFSTAEDNQSAVTVR Unmodified 1851.8963 0.8962698 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.881 48.226 2 9.2017E-42 16664 20181213_JW_Orientia_Karp_2_3 246.66 184.19 3530100000 690320000 757200000 1122800000 312130000 203300000 213210000 27034000 204020000 8641 1074 7381 52431;52432;52433;52434;52435;52436;52437;52438 33310;33311;33312;33313;33314;33315;33316;33317 33315 8 SQIFSTAEDNQSAVTVR Deamidation (NQ) 1852.8803 0.88028538 1074 Karp_00050 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 2 1 1 50.527 50.803 2 2.1511E-53 19631 20181213_JW_Orientia_Karp_1_2 257.48 180.19 594090000 203770000 144590000 137950000 47206000 49085000 0 0 11485000 8642 1074 7381 52439;52440;52441;52442;52443;52444;52445;52446;52447;52448;52449;52450;52451 33318;33319;33320;33321;33322;33323 33319 421;1790 6 SQIFSTASDNQPTVTIK Unmodified 1835.9265 0.92650729 1585 V9HWB4;P11021 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.237 51.582 2 1.0763E-53 19759 20181213_JW_Orientia_Karp_1_2 285.81 194.11 286910000 45416000 69493000 60330000 33538000 28017000 20608000 24651000 4860800 8643 1585 7382 52452;52453;52454;52455;52456;52457;52458;52459 33324;33325;33326;33327;33328;33329;33330;33331 33325 8 SQIHDIVLVGGSTR Unmodified 1480.7998 0.79979063 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PNE6;B4E1Q1;E9PN89;A8K7Q2 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 43.159 43.452 2 0.0040247 14333 20181213_JW_Orientia_Karp_2_3 113.76 80.532 78185000 14439000 21583000 13122000 8987000 6084900 5379600 8589900 0 8644 1586 7383 52460;52461;52462;52463;52464;52465;52466 33332;33333;33334;33335;33336;33337;33338;33339 33338 8 SQIIELQSEGLEK Unmodified 1472.7722 0.77223848 1252 Karp_00931 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 50.919 51.264 2 0.0020345 18168 20181213_JW_Orientia_Karp_2_1 126.1 61.219 587870000 111560000 164820000 94706000 60494000 52318000 53996000 40814000 9159900 8645 1252 7384 52467;52468;52469;52470;52471;52472;52473;52474 33340;33341 33340 1 SQLENVGAK Unmodified 944.49271 0.49270958 1171 Karp_00625 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 25.756 26.101 2 0.00050391 6645 20181213_JW_Orientia_Karp_1_1 157.34 24.587 1040400000 142320000 203260000 135100000 131380000 118620000 73632000 119120000 116930000 8646 1171 7385 52475;52476;52477;52478;52479;52480;52481;52482 33342;33343;33344;33345;33346;33347 33342 6 SQLESPEFVSLIR Unmodified 1503.7933 0.79330827 1262 Karp_01022 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 64.193 64.409 2 1.8631E-17 28151 20181213_JW_Orientia_Karp_1_2 250.51 175.97 212120000 84144000 43633000 38935000 0 22796000 14681000 410100 7521100 8647 1262 7386 52483;52484;52485;52486;52487;52488;52489 33348;33349;33350;33351;33352;33353;33354;33355 33349 8 SQLIMQAEAEAASVR Oxidation (M) 1618.7985 0.79847001 289 A2VCL5;Q6IB58;Q5ST80;Q53HQ0;O75955-2;O75955 FLOT1 Flotillin-1 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 51.702 51.967 2 0.010578 20452 20181213_JW_Orientia_Karp_1_1 92.939 41.653 30766000 13815000 0 13282000 0 0 2771500 0 897550 8648 289 7387 52490;52491;52492;52493 33356;33357;33358;33359 33358 209 4 SQLIMQAEAEAASVR Unmodified 1602.8036 0.80355538 289 A2VCL5;Q6IB58;Q5ST80;Q53HQ0;O75955-2;O75955 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS 1 54.122 54.321 2 0.0041077 21400 20181213_JW_Orientia_Karp_1_3 141.65 92.457 0 0 0 0 0 0 0 0 0 8649 289 7387 52494 33360 33360 1 SQLLAPPPPSAPPGNK Unmodified 1569.8515 0.85149185 1686 P49750-3;P49750;P49750-4;Q86YA8;F8VU51 YLPM1 YLP motif-containing protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 46.743 47.105 2 0.0046504 15067 20181213_JW_Orientia_Karp_3_2 103.46 60.154 13975000 5540600 0 4360800 1971000 0 0 606760 1495300 8650 1686 7388 52495;52496;52497;52498;52499 33361;33362;33363 33363 3 SQLLGSAHEVQR Unmodified 1323.6895 0.6895119 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 29.242 29.511 2;3 0.00062208 7607 20181213_JW_Orientia_Karp_1_3 149.49 86.209 34096000 11038000 16603000 1757700 0 1086000 761070 2849900 0 8651 316 7389 52500;52501;52502;52503;52504;52505;52506;52507 33364;33365;33366 33366 3 SQLLSNGISLTDK Deamidation (NQ) 1375.7195 0.71947463 1284 Karp_01155 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 56.941 57.285 2 0.0042024 23936 20181213_JW_Orientia_Karp_1_1 123.26 43.766 29005000 5912700 0 8940700 3322400 3566400 4940200 421630 1900600 8652 1284 7390 52508;52509;52510;52511;52512;52513;52514 33367 33367 699 1 SQLMVEDQVLDHPPASPR Oxidation (M);Deamidation (NQ) 2034.9681 0.96805453 1986 Q9NVP4-4 yes yes 0 1 1 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 35.333 35.706 3 0.0060789 10263 20181213_JW_Orientia_Karp_3_1 101.04 64.11 592890000 123040000 114970000 70534000 109940000 36272000 0 60407000 77716000 8653 1986 7391 52515;52516;52517;52518;52519;52520;52521 33368 33368 2094 1527 1 SQLQTTISSQHHK Unmodified 1493.7587 0.7586541 1135 Karp_00415 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 19.971 20.233 3 0.012714 3090 20181213_JW_Orientia_Karp_2_2 97.779 58.199 21891000 6479300 3926100 3423800 2467700 1109900 1969800 2514700 0 8654 1135 7392 52522;52523;52524;52525;52526;52527;52528;52529 33369;33370;33371;33372;33373;33374 33372 6 SQLRLLPSR Acetyl (Protein N-term);Deamidation (NQ) 1111.635 0.63495714 2002 Q9ULD0;Q9ULD0-2 OGDHL 2-oxoglutarate dehydrogenase-like, mitochondrial yes no 1 1 0 1 By MS/MS By matching By matching By matching 1 1 1 1 17.705 17.992 3 0.039225 3360 20181213_JW_Orientia_Karp_1_2 47.869 14.87 3140100 0 1567600 652160 710550 0 0 209730 0 8655 2002 7393 52530;52531;52532;52533 33375 33375 2107 0 SQNIVTDSSSLSAEAIR Unmodified 1776.8854 0.88537076 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 50.564 51.168 2 1.8767E-40 19506 20181213_JW_Orientia_Karp_1_2 249.36 175.41 14178000 0 0 0 4005600 0 0 8247600 1925100 8656 506 7394 52534;52535;52536;52537 33376;33377;33378;33379 33376 4 SQNQVTIHSQDQEHGHKENK 5 Deamidation (NQ) 2348.0153 0.015275311 380 Q6IRW3;B2R7C8;A8K6Z6;Q02383 SEMG2 Semenogelin-2 yes no 0 5 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 43.139 43.531 3 0.035334 14644 20181213_JW_Orientia_Karp_1_2 43.261 25.209 41316000 0 7731400 5408600 0 0 19970000 7385700 820620 8657 380 7395 52538;52539;52540;52541;52542 33380 33380 1420;1421;1422 0 SQPAILLLTAAR Unmodified 1252.7503 0.75032125 1026 J3KN66;Q5JTV8-3;Q5JTV8;H0Y4R4 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 62.302 62.578 2 0.0017038 27402 20181213_JW_Orientia_Karp_1_1 125.36 65.933 24051000 6319600 3593500 7191400 312910 0 1337800 0 5296000 8658 1026 7396 52543;52544;52545;52546;52547;52548 33381;33382;33383 33381 3 SQQALVQK Unmodified 900.50288 0.50288033 364 Q5QNZ2;Q53GB3;Q08ET0;A8K4W2;P24539 ATP5F1;hCG_39985 ATP synthase F(0) complex subunit B1, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 21.761 22.073 2 0.020972 4547 20181213_JW_Orientia_Karp_1_2 87.696 5.3914 3192000 0 1903500 565640 358400 0 0 364500 0 8659 364 7397 52549;52550;52551;52552 33384 33384 1 SQQASVLQGYKNR 4 Deamidation (NQ) 1481.6998 0.69980182 259 A0A024RDF7;E7EPB1;E7EQS8;Q6N021-2;Q6N021-3;Q6N021 FLJ20032;TET2 Methylcytosine dioxygenase TET2 yes no 0 4 0 1 By MS/MS 1 37.948 38.099 2 0.035748 10862 20181213_JW_Orientia_Karp_2_2 63.184 10.459 0 0 0 0 0 0 0 0 0 8660 259 7398 52553 33385 33385 1345;1346;1347 1 SQQGFFFFENTCQTCR Unmodified 2055.8567 0.85672994 1073 Karp_00049 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 64.189 64.366 2 2.3006E-204 28099 20181213_JW_Orientia_Karp_1_2 383.44 319.58 119160000 38722000 30164000 37080000 0 7593000 4160300 0 1436400 8661 1073 7399 52554;52555;52556;52557;52558;52559 33386;33387;33388;33389;33390 33387 5 SQQLDSNVTMR Oxidation (M);2 Deamidation (NQ) 1295.5663 0.5663448 960 G5EA29 GEMIN2 yes yes 0 2 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 53.544 53.81 2 0.0373 21811 20181213_JW_Orientia_Karp_1_1 56.632 10.175 532190000 206180000 129690000 113940000 39826000 4238800 38314000 0 0 8662 960 7400 52560;52561;52562;52563;52564;52565 33391;33392;33393;33394 33391 1733;1734 0 SQQLDSNVTMR 2 Deamidation (NQ) 1279.5714 0.57143018 960 G5EA29 GEMIN2 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 59.423 59.716 2 0.021723 25061 20181213_JW_Orientia_Karp_1_2 81.771 49.553 344980000 141900000 66688000 67206000 1776800 21480000 25401000 20525000 0 8663 960 7400 52566;52567;52568;52569;52570;52571;52572 33395;33396;33397;33398 33396 1733;1734 0 SQSAAVTPSSTTSSTR Unmodified 1566.7485 0.74854293 1813 Q68E00;Q16186 DKFZp686G2045;ADRM1 Proteasomal ubiquitin receptor ADRM1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 26.059 26.411 2 0.0053892 6276 20181213_JW_Orientia_Karp_1_2 124.47 66.223 15979000 0 3915100 4988500 2346900 1480800 1144000 0 2104200 8664 1813 7401 52573;52574;52575;52576;52577;52578;52579 33399;33400;33401;33402;33403 33400 5 SQSCGPQPSWGASCPELRPHVEPR Unmodified 2718.2391 0.23910121 1849 Q5T749 KPRP Keratinocyte proline-rich protein yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 42.706 43.006 4 0.027814 13797 20181213_JW_Orientia_Karp_3_1 44.258 25.235 104910000 36452000 20969000 11913000 7824600 2277000 0 25473000 0 8665 1849 7402 52580;52581;52582;52583;52584;52585 33404 33404 1 SQSIEVLNLRTQR Acetyl (Protein N-term);2 Deamidation (NQ) 1586.8264 0.82639932 1948 Q96PB7-6;Q96PB7-5 yes no 1 2 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 52.466 52.565 2 0.0050834 20328 20181213_JW_Orientia_Karp_1_3 109.16 33.504 23807000 13480000 0 10326000 0 0 0 0 0 8666 1948 7403 52586;52587;52588 33405;33406;33407 33407 2070;2071 3 SQSLTSISESELTTIALEALIDR Unmodified 2476.2908 0.29082846 1443 Karp_02418 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 76.652 76.651 2;3 2.5687E-10 31167 20181213_JW_Orientia_Karp_2_2 165.9 126.38 106120000 12149000 23252000 32922000 12111000 15552000 10133000 0 0 8667 1443 7404 52589;52590;52591;52592;52593;52594;52595;52596;52597;52598;52599 33408;33409;33410;33411;33412;33413;33414 33413 7 SQSNNIFSNAGL 2 Deamidation (NQ) 1252.5572 0.55716033 1007 Q8IWT0-2;H7C3R6 ZBTB8OS yes no 0 2 0 0 By MS/MS 1 36.025 36.575 2 0.0045153 10437 20181213_JW_Orientia_Karp_2_1 114.86 19.117 0 0 0 0 0 0 0 0 0 8668 1007 7405 52600 33415 33415 369;370 1 SQSVRPGADVTFICTAK Unmodified 1835.92 0.91998213 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 43.773 44.115 3 0.011917 15211 20181213_JW_Orientia_Karp_1_2 122.16 84.544 168060000 34178000 56314000 49860000 0 0 0 26942000 765190 8669 195 7406 52601;52602;52603;52604;52605 33416;33417;33418;33419 33417 4 SQVEEELFSVR Unmodified 1321.6514 0.65139506 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 54.344 54.613 2 3.0188E-09 22231 20181213_JW_Orientia_Karp_1_1 201.09 108.85 74242000 20350000 24000000 23169000 3369200 3353100 0 0 0 8670 1803 7407 52606;52607;52608;52609;52610 33420;33421;33422;33423 33420 4 SQVFSTAADGQTQVEIK Unmodified 1807.8952 0.89520716 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;B7Z4T3;A1XP52 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 48.032 48.322 2 0.00030413 17700 20181213_JW_Orientia_Karp_1_2 154.13 92.918 20131000 6237600 5456600 7389600 0 0 817240 229970 0 8671 721 7408 52611;52612;52613;52614;52615 33424;33425;33426;33427 33425 4 SQVVAGTNYFIK Unmodified 1325.698 0.69795133 1547 Q76LA1;P04080 CSTB Cystatin-B yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.818 50.119 2 4.9564E-23 17550 20181213_JW_Orientia_Karp_2_2 234.67 170.25 243340000 43800000 48635000 33381000 50734000 19906000 36199000 0 10684000 8672 1547 7409 52616;52617;52618;52619;52620;52621;52622 33428;33429;33430;33431 33429 4 SQYEQLAEQNR Unmodified 1364.6321 0.6320566 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 33.398 33.72 2 3.0333E-51 8665 20181213_JW_Orientia_Karp_3_2 284.62 186.04 1021900000 235120000 152840000 175170000 170000000 77405000 67707000 143710000 0 + 8673 798 7410 52623;52624;52625;52626;52627;52628;52629;52630 33432;33433;33434;33435;33436;33437;33438;33439;33440 33440 9 SQYEQLAEQNR Deamidation (NQ) 1365.6161 0.61607219 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 34.807 35.141 2 0.033425 9671 20181213_JW_Orientia_Karp_2_1 76.165 31.525 29239000 3492500 1278400 12460000 3083900 0 1767700 7156500 0 + 8674 798 7410 52631;52632;52633;52634;52635;52636 33441 33441 283 0 SQYEQLAEQNRK Unmodified 1492.727 0.72701962 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 1 2 2 1 26.613 26.953 2;3 0.0020133 6222 20181213_JW_Orientia_Karp_3_1 136.27 99.702 1202700000 170920000 321650000 184690000 166200000 88112000 71844000 196890000 2358200 + 8675 798 7411 52637;52638;52639;52640;52641;52642;52643;52644;52645;52646;52647;52648;52649;52650 33442;33443;33444 33444 3 SQYEQLAEQNRK Deamidation (NQ) 1493.711 0.71103521 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 28.01 28.353 3 0.020031 6774 20181213_JW_Orientia_Karp_3_1 77.644 62.142 119540000 10178000 12564000 0 49803000 23643000 16930000 6426100 0 + 8676 798 7411 52651;52652;52653;52654;52655;52656 33445 33445 283 1 SRAEAESWYQTK Unmodified 1454.679 0.6790068 341;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;CON__O95678;O95678;CON__P04259;P04259;B4DKV4;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT75;KRT6B;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C no no 0 0 0 1 By MS/MS 1 29.626 30.378 3 0.0032786 7735 20181213_JW_Orientia_Karp_3_1 166.24 116.96 0 0 0 0 0 0 0 0 0 + 8677 341;793;805 7412 52657 33446 33446 1 SREQMEQLRNELLQER Oxidation (M);3 Deamidation (NQ) 2076.9746 0.97459647 1784 Q0VF96;Q0VF96-2 CGNL1 Cingulin-like protein 1 yes no 0 3 1 2 By MS/MS By matching 1 1 38.175 38.425 4 0.042911 12229 20181213_JW_Orientia_Karp_1_2 43.914 15.333 3223700 0 1834000 0 0 1389700 0 0 0 8678 1784 7413 52658;52659 33447 33447 1984;1985;1986 0 SRKESYSIYVYK Unmodified 1521.7827 0.78274359 1624;1817 P23527;P33778;Q6DRA6;Q6DN03;Q16778;A0A024RCJ2;P06899 HIST1H2BO;HIST1H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-O;Histone H2B type 1-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B;Histone H2B type 1-J no no 0 0 0 2 By MS/MS By matching By matching 1 1 1 32.057 32.356 3 0.0068893 9540 20181213_JW_Orientia_Karp_1_1 124.38 77.497 38664000 19204000 18976000 0 483750 0 0 0 0 8679 1624;1817 7414 52660;52661;52662 33448 33448 1 SRKESYSVYVYK Unmodified 1507.7671 0.76709352 449 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L no no 0 0 0 2 By MS/MS By MS/MS By matching 1 1 1 29.023 29.343 3 0.00063042 7637 20181213_JW_Orientia_Karp_1_2 161.25 120.49 66610000 28147000 33898000 0 0 0 0 0 4565200 8680 449 7415 52663;52664;52665 33449;33450 33450 2 SRLGDLYEEEMR Unmodified 1496.6929 0.6929423 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 1 By MS/MS By matching By matching 1 1 1 44.098 44.281 3 0.010483 15706 20181213_JW_Orientia_Karp_1_1 129.34 84.727 33127000 9314700 16266000 7547000 0 0 0 0 0 8681 1571 7416 52666;52667;52668 33451 33451 1 SRLGDLYEEEMR Oxidation (M) 1512.6879 0.68785692 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 1 1 By matching By matching By matching By MS/MS 1 1 1 1 38.412 38.686 3 0.0031918 11518 20181213_JW_Orientia_Karp_2_1 124.21 82.666 59085000 35093000 12565000 10314000 1114100 0 0 0 0 8682 1571 7416 52669;52670;52671;52672 33452 33452 1190 1 SRQFSSR Acetyl (Protein N-term) 908.44643 0.44642809 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 1 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 22.231 22.623 2 0.015566 3551 20181213_JW_Orientia_Karp_3_2 152.47 58.464 23050000 5637300 7088700 0 1022900 0 0 6547900 2753200 + 8683 995;996 7417 52673;52674;52675;52676;52677 33453;33454;33455;33456 33456 4 SSAIWTK Unmodified 791.41775 0.41775372 1366 Karp_01876 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 32.841 33.174 2 0.012143 9403 20181213_JW_Orientia_Karp_1_3 126.28 50.243 84114000 31313000 27003000 18518000 1973500 0 1634900 3672400 0 8684 1366 7418 52678;52679;52680;52681;52682;52683;52684 33457;33458;33459;33460;33461 33458 5 SSANVEEAFFTLAR Unmodified 1540.7522 0.75217174 986 H0YNE9;Q92930 RAB8B Ras-related protein Rab-8B yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 65.882 66.122 2 0.0059367 29507 20181213_JW_Orientia_Karp_1_1 105.95 56.762 16961000 7283300 0 5862700 0 0 0 1793500 2021300 8685 986 7419 52685;52686;52687;52688 33462 33462 1 SSCVQEELDFSGPVDASDR Unmodified 2096.8957 0.89567745 1069 Karp_00038 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.486 56.802 2 5.8826E-165 22867 20181213_JW_Orientia_Karp_1_3 352.73 286.89 455120000 96021000 152080000 107380000 38313000 36451000 24761000 0 112080 8686 1069 7420 52689;52690;52691;52692;52693;52694;52695 33463;33464;33465;33466;33467;33468;33469;33470 33466 8 SSCVQEELDFSGPVDASDRR Unmodified 2252.9968 0.99678848 1069 Karp_00038 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 49.503 49.848 3 0.0012102 17414 20181213_JW_Orientia_Karp_2_2 156.06 123.88 1661100000 560550000 370040000 393000000 114120000 82176000 76827000 383830 64030000 8687 1069 7421 52696;52697;52698;52699;52700;52701;52702;52703 33471;33472;33473;33474;33475;33476;33477 33475 7 SSDHDIEQYCQFVATR Unmodified 1954.8479 0.84793939 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.026 48.327 3 2.023E-05 16723 20181213_JW_Orientia_Karp_2_3 149.3 107.92 69320000 7872300 19960000 9469700 10041000 3122700 5794800 0 13060000 8688 1252 7422 52704;52705;52706;52707;52708;52709;52710 33478;33479;33480;33481;33482;33483;33484 33483 7 SSDLISK Unmodified 748.39668 0.39668393 1266 Karp_01074 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 26.234 26.738 2 0.029807 5257 20181213_JW_Orientia_Karp_3_2 89.752 29.458 3320800 0 439700 0 0 1619900 0 0 1261200 8689 1266 7423 52711;52712;52713 33485 33485 1 SSDTDITLSSCENIISSNK Unmodified 2069.9423 0.94229329 1417 Karp_02254 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 53.706 53.916 2 3.1389E-32 21734 20181213_JW_Orientia_Karp_1_1 227.92 152.23 56775000 14164000 21306000 12603000 0 3954800 4747800 0 0 8690 1417 7424 52714;52715;52716;52717;52718 33486;33487;33488;33489;33490 33486 5 SSDYNQTIFQSIIDASK Unmodified 1915.9163 0.91633654 1196 Karp_00815 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 70.786 70.956 2 2.7902E-06 25766 20181213_JW_Orientia_Karp_3_1 153.14 112.41 7667700 0 0 0 0 2172800 0 3601400 1893600 8691 1196 7425 52719;52720;52721 33491 33491 1 SSEAETQQPPAAPPAAPALSAADTK Acetyl (Protein N-term) 2447.1816 0.18161236 1745 P67809;Q6PKI6;Q05D43;C9J5V9;Q7KZ24;Q15905 YBX1;YB-1 Nuclease-sensitive element-binding protein 1 yes no 1 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 59.916 60.166 3 0.013227 23354 20181213_JW_Orientia_Karp_2_3 56.562 21.84 82945000 8914700 7328500 8248200 18413000 22160000 17881000 0 0 8692 1745 7426 52722;52723;52724;52725;52726;52727 33492 33492 1 SSEHINEGETAMLVCK Oxidation (M) 1819.808 0.80804841 661 B4DY23;Q54A51;P35613-3;P35613-4;P35613-2;P35613;R4GMX5;I3L192;R4GN83 hEMMPRIN;BSG Basigin yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 34.624 34.991 3 0.025149 10022 20181213_JW_Orientia_Karp_3_1 74.853 36.066 4489600 0 0 1889700 0 504060 0 2095900 0 8693 661 7427 52728;52729;52730 33493 33493 408 1 SSEIEQAVQSLDR Unmodified 1460.7107 0.71070086 163 B3KPC7;A0A024R897;Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 53.62 53.901 2 7.6185E-05 21371 20181213_JW_Orientia_Karp_1_2 166.24 105.72 91553000 30568000 20835000 0 10149000 16860000 13142000 0 0 8694 163 7428 52731;52732;52733;52734;52735 33494 33494 1 SSEIEQAVQSLDRNGVDLLMK Deamidation (NQ) 2332.158 0.15804014 163 B3KPC7;A0A024R897;Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein yes no 0 1 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 69.948 70.091 3 0.018208 31885 20181213_JW_Orientia_Karp_1_1 83.948 43.433 38241000 15792000 0 5871800 0 2886500 894580 9916000 2879700 8695 163 7429 52736;52737;52738;52739;52740;52741 33495;33496;33497 33495 66 3 SSELEQYLQR Unmodified 1251.6095 0.60953025 534 B4E245;E7EMB1;B3KUB9;Q9UH65 SWAP70 Switch-associated protein 70 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 48.522 48.622 2 0.00056903 17613 20181213_JW_Orientia_Karp_1_3 169.09 74.237 0 0 0 0 0 0 0 0 0 8696 534 7430 52742;52743 33498;33499 33499 2 SSEVFTTFK Unmodified 1044.5128 0.51277632 1664 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 45.672 45.922 2 0.0174 16132 20181213_JW_Orientia_Karp_1_2 85.731 40.649 35657000 13347000 9283100 9776500 2073900 0 1176400 0 0 8697 1664 7431 52744;52745;52746;52747;52748 33500 33500 1 SSFHDFQ Unmodified 866.35588 0.35588174 1403 Karp_02211 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 34.734 35.092 2 0.011563 9887 20181213_JW_Orientia_Karp_2_3 119.56 66.205 130930000 30981000 31509000 35683000 9922100 7564300 6336200 8815100 120970 8698 1403 7432 52749;52750;52751;52752;52753;52754;52755;52756 33501;33502;33503;33504;33505 33504 5 SSFINYVLIK Unmodified 1182.6649 0.66486028 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 63.369 63.608 2 1.6683E-05 27961 20181213_JW_Orientia_Karp_1_1 162.88 88.576 12373000 8494100 0 2845700 157720 0 0 0 875800 8699 1449 7433 52757;52758;52759;52760 33506 33506 1 SSFSQHAR Unmodified 918.43078 0.43077802 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;P02545-2;W8QEH3;Q3BDU5;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 11.561 11.999 2 0.0041955 1851 20181213_JW_Orientia_Karp_1_3 139.97 71.572 1259100 0 49150 198840 0 877770 133380 0 0 8700 1543;1544;1851 7434 52761;52762;52763;52764;52765 33507;33508;33509;33510 33509 4 SSFYVNGLTLGGQK Deamidation (NQ) 1470.7355 0.73545904 1567 P07737;K7EJ44;I3L3D5 PFN1 Profilin-1 yes no 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 2 60.323 60.578 2 1.3344E-34 22727 20181213_JW_Orientia_Karp_2_3 250.26 158.21 694570000 204540000 25103000 109830000 101760000 142350000 104270000 0 6713700 8701 1567 7435 52766;52767;52768;52769;52770;52771;52772;52773;52774;52775;52776;52777;52778;52779 33511;33512;33513;33514;33515;33516;33517;33518;33519;33520 33517 1041 10 SSGGLLGFWK Unmodified 1050.5498 0.54983053 1918 Q8TD55;B3KTW8;C9J4A7 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes no 0 0 0 0 By MS/MS 1 63.005 63.203 2 0.003384 26918 20181213_JW_Orientia_Karp_1_3 116.37 68.523 3484300 0 0 3484300 0 0 0 0 0 8702 1918 7436 52780 33521 33521 1 SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK Oxidation (M) 3718.7129 0.71290906 901 E9PLA9;Q14444-2;Q14444;E9PP31;B4DSF8 CAPRIN1 Caprin-1 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 37.15 37.44 4 8.3789E-07 11882 20181213_JW_Orientia_Karp_1_1 75.558 46.241 45826000 9814400 9913300 14933000 0 0 4500300 6665200 0 8703 901 7437 52781;52782;52783;52784;52785 33522;33523 33522 515 2 SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK Oxidation (M);Deamidation (NQ) 3719.6969 0.69692465 901 E9PLA9;Q14444-2;Q14444;E9PP31;B4DSF8 CAPRIN1 Caprin-1 yes no 0 1 1 0 By MS/MS 1 37.291 37.543 4 6.1426E-05 10512 20181213_JW_Orientia_Karp_2_2 67.61 47.707 4252600 0 0 0 0 4252600 0 0 0 8704 901 7437 52786 33524;33525 33525 1709 515 2 SSGPTSLFAVTVAPPGAR Unmodified 1713.905 0.90498399 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 64.147 64.379 2 0.011801 27729 20181213_JW_Orientia_Karp_1_3 105.19 57.486 284480000 108080000 67399000 59264000 4133400 19744000 12299000 258320 13308000 8705 595 7438 52787;52788;52789;52790;52791;52792;52793;52794 33526 33526 1 SSGPYGGGGQYFAK Unmodified 1374.6204 0.62042929 209 F8W6I7;A0A024RB53;A0A024RAZ7;P09651-3;P09651-2;P09651;Q9BSM5;Q6IPF2;Q0VAC0;H0YH80;B4E0B5;A0A024QZ98;Q32P51;B4DP35;Q3MI39 HNRNPA1;HNRPA1;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.28 39.587 2 3.4775E-05 12632 20181213_JW_Orientia_Karp_1_2 166.86 118.42 578360000 133170000 102580000 88061000 83363000 52948000 37813000 80418000 0 8706 209 7439 52795;52796;52797;52798;52799;52800;52801 33527;33528;33529;33530;33531;33532;33533 33528 7 SSGSPYGGGYGSGGGSGGYGSR Unmodified 1909.7827 0.7826966 1700 P51991;B4E3E6;B4DDB6;P51991-2;B4E036;Q8NFG3;H7C1J8;Q66K53 HNRNPA3;HNRPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.892 34.214 2 4.341E-23 9107 20181213_JW_Orientia_Karp_2_1 205.52 169.86 164810000 40272000 25339000 39938000 8431500 15221000 19374000 16237000 0 8707 1700 7440 52802;52803;52804;52805;52806;52807;52808 33534;33535;33536;33537;33538;33539 33536 6 SSGSSYPSLLQCLK Unmodified 1525.7446 0.74464352 787 CON__P00761 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 56.588 56.945 2 2.8696E-25 22964 20181213_JW_Orientia_Karp_1_3 233.13 173.2 986700000 148220000 143910000 195410000 138490000 213100000 134600000 748530 12227000 + 8708 787 7441 52809;52810;52811;52812;52813;52814;52815;52816;52817 33540;33541;33542;33543;33544;33545;33546;33547 33542 8 SSHYDELLAAEAR Unmodified 1460.6896 0.68957148 451 B2R5U1;B4E299;B3KU67;Q59FF0;Q7KZF4;I6TRR8;H7C597 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 41.688 41.863 3 0.0083647 13914 20181213_JW_Orientia_Karp_1_2 96.745 49.032 0 0 0 0 0 0 0 0 0 8709 451 7442 52818;52819 33548;33549 33549 2 SSIAGLLLK Unmodified 900.56442 0.56441796 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS 1 56.087 56.285 2 0.011882 22648 20181213_JW_Orientia_Karp_1_3 90.37 15.521 3770600 0 0 3770600 0 0 0 0 0 8710 1803 7443 52820 33550 33550 1 SSIDHEFVK Unmodified 1060.5189 0.51892433 1339 Karp_01469 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 31.105 31.455 2 0.029856 7867 20181213_JW_Orientia_Karp_2_1 60.828 21.866 64571000 20311000 16093000 18928000 4723800 0 0 4514600 0 8711 1339 7444 52821;52822;52823;52824;52825 33551 33551 1 SSIENNVEFETEASTK Unmodified 1783.8112 0.81120276 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS 1 45.04 45.04 2 0.0071184 16113 20181213_JW_Orientia_Karp_1_1 143.56 84.97 0 0 0 0 0 0 0 0 0 8712 1366 7445 52826 33552 33552 1 SSIENNVEFETEASTK Deamidation (NQ) 1784.7952 0.79521835 1366 Karp_01876 yes yes 0 1 0 0 By MS/MS By matching By matching 1 1 1 46.228 46.362 2 6.5051E-06 16734 20181213_JW_Orientia_Karp_1_1 168.31 108.05 10235000 5772500 0 0 0 1230100 3232500 0 0 8713 1366 7445 52827;52828;52829 33553 33553 830 0 SSILLDVKPWDDETDMAK Oxidation (M) 2077.9878 0.98778692 80 A0A024R3W7;P24534;A4D1M6 EEF1B2;LOC392793 Elongation factor 1-beta yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.829 60.079 3 0.00057105 25084 20181213_JW_Orientia_Karp_1_3 129.32 96.018 101600000 28230000 25640000 17517000 6814700 0 23394000 0 0 8714 80 7446 52830;52831;52832;52833;52834 33554;33555;33556;33557;33558;33559 33557 86 6 SSLGPVGLDK Unmodified 971.52876 0.52876073 875 F5H726;F5H676;F5H136;E7ERF2;P17987;F5GZI8;F5GYL4 TCP1 T-complex protein 1 subunit alpha yes no 0 0 0 0 By MS/MS 1 43.207 43.557 2 0.019408 14905 20181213_JW_Orientia_Karp_1_2 96.665 40.118 0 0 0 0 0 0 0 0 0 8715 875 7447 52835 33560 33560 1 SSLLAENQVLMER Oxidation (M) 1504.7555 0.75554256 1895 Q86VS8;Q2VJ45 HOOK3 Protein Hook homolog 3 yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 49.81 50.072 2 0.015997 18872 20181213_JW_Orientia_Karp_1_3 86.772 31.458 24717000 11356000 4783200 3291800 0 2008700 0 0 3276600 8716 1895 7448 52836;52837;52838;52839;52840 33561 33561 1491 1 SSLNPILFR Unmodified 1045.592 0.59202969 198 A0A024RAD5;P39656-2;P39656-3;P39656;U3KQ84 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 56.246 56.566 2 0.00077792 23165 20181213_JW_Orientia_Karp_1_2 147.29 45.598 87517000 0 28743000 41447000 3217500 6308400 7801600 0 0 8717 198 7449 52841;52842;52843;52844;52845;52846 33562;33563;33564;33565;33566 33563 5 SSLVEIFR Unmodified 949.52328 0.52328142 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.103 57.405 2 0.0046729 23389 20181213_JW_Orientia_Karp_1_3 127.56 43.321 117840000 17693000 19367000 21937000 3796700 8343600 32626000 0 14078000 8718 1170 7450 52847;52848;52849;52850;52851;52852;52853 33567;33568;33569;33570;33571;33572;33573 33569 7 SSNQEVQNDDIINNK Deamidation (NQ) 1717.7755 0.77548596 1144 Karp_00459 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 37.174 37.524 2 5.8821E-19 11407 20181213_JW_Orientia_Karp_1_3 212.59 121 16333000 2356000 4363300 5909000 871090 0 0 2833300 0 8719 1144 7451 52854;52855;52856;52857;52858;52859;52860 33574;33575;33576;33577;33578;33579 33575 537;538 6 SSNQEVQNDDIINNK Unmodified 1716.7915 0.79147037 1144 Karp_00459 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 35.324 35.69 2 3.8586E-37 9947 20181213_JW_Orientia_Karp_2_1 242.48 147.79 23076000 0 10667000 9619500 2789700 0 0 0 0 8720 1144 7451 52861;52862;52863;52864 33580;33581;33582;33583;33584 33582 5 SSPEPVALTESETEYVIR Unmodified 2005.9844 0.9844161 541 B3KW21;Q8WUI6;Q9Y678 COPG;COPG1 Coatomer subunit gamma-1 yes no 0 0 0 0 By MS/MS By matching 1 1 59.908 60.007 2 0.042148 25697 20181213_JW_Orientia_Karp_1_1 66.708 32.947 18169000 12111000 0 6058600 0 0 0 0 0 8721 541 7452 52865;52866 33585 33585 1 SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR Unmodified 3483.6251 0.62508033 1664 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 39.874 40.112 3 0.00040015 11947 20181213_JW_Orientia_Karp_2_2 69.874 48.256 51019000 0 26299000 18074000 0 3499200 3147300 0 0 8722 1664 7453 52867;52868;52869;52870 33586;33587 33587 2 SSPQIEGLLSR Unmodified 1185.6354 0.63535107 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.825 51.17 2 0.00081822 18115 20181213_JW_Orientia_Karp_2_2 132.03 66.871 2433700000 534700000 498570000 280660000 294710000 176380000 264200000 365150000 19307000 8723 1251 7454 52871;52872;52873;52874;52875;52876;52877;52878 33588;33589;33590;33591;33592;33593;33594;33595 33592 8 SSPSTTDLGLK Unmodified 1104.5663 0.56626845 1126 Karp_00329 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 39.421 39.765 2 0.0039211 12282 20181213_JW_Orientia_Karp_3_1 109.83 68.836 839160000 230510000 222780000 143250000 44840000 109060000 0 76166000 12555000 8724 1126 7455 52879;52880;52881;52882;52883;52884;52885;52886;52887 33596;33597;33598 33597 3 SSPVVIDASTAIDAPSNLR Unmodified 1911.9902 0.99017018 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617;H0Y4K8 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 59.909 60.229 2 1.6318E-84 25484 20181213_JW_Orientia_Karp_1_2 370.66 284.74 578500000 150180000 101570000 189790000 31838000 45229000 25620000 1404300 32869000 8725 85 7456 52888;52889;52890;52891;52892;52893;52894;52895 33599;33600;33601;33602;33603;33604;33605;33606;33607 33601 9 SSPVYVGR Unmodified 863.45012 0.45011648 582 B4DIT7;V9HWG3;P21980;B4DTN7;P21980-2;A2A299;P21980-3 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 30.836 31.199 2 0.01658 8554 20181213_JW_Orientia_Karp_1_2 93.195 41.86 26246000 12643000 10401000 0 0 865340 0 2337200 0 8726 582 7457 52896;52897;52898;52899 33608;33609 33609 2 SSQPLASK Unmodified 816.43413 0.43413207 247 B4DWA0;A0A024RCT9;P17096;P17096-3;E5RIT9 HMGA1;C2orf81 High mobility group protein HMG-I/HMG-Y no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 17.933 18.143 2 0.0042057 3105 20181213_JW_Orientia_Karp_2_3 138.06 71.633 71633000 26692000 25650000 13885000 2383900 0 2001100 1020700 0 8727 247 7458 52900;52901;52902;52903;52904;52905;52906;52907;52908;52909 33610;33611;33612;33613;33614;33615 33614 6 SSQQPSTPQQAPPGQPQQGTFVAHK Unmodified 2630.2837 0.28372644 520 H3BRH3;B3KRL4;E7ERS3;B4DTK7;Q86VM9 ZC3H18;NHN1 Zinc finger CCCH domain-containing protein 18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 36.437 36.712 3 0.005217 11056 20181213_JW_Orientia_Karp_1_3 59.614 40.575 19967000 6742800 0 9345600 0 1034500 0 2844000 0 8728 520 7459 52910;52911;52912;52913 33616;33617;33618 33617 3 SSQSNYGQHGSGSSQSSGYGQHGSSSGQTTGFGQHR Unmodified 3613.5187 0.51871778 817 CON__Q5D862;Q5D862 FLG2 Filaggrin-2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 23.399 23.739 5 0.036073 4331 20181213_JW_Orientia_Karp_2_2 30.076 17.84 12123000 0 0 3829000 3112400 2249700 1073500 1858400 0 + 8729 817 7460 52914;52915;52916;52917;52918 33619 33619 1 SSQSSSQQFSGIGR Unmodified 1454.675 0.67498405 1929 Q92841;H3BLZ8;Q59F66;Q92841-1;Q92841-3;Q92841-2;Q9UQL5 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 33.932 34.294 2 3.5401E-05 9974 20181213_JW_Orientia_Karp_1_2 166.62 111.64 26966000 10179000 6380100 7503100 0 0 0 2438000 465400 8730 1929 7461 52919;52920;52921;52922;52923 33620;33621 33620 2 SSSADFGTFNTSQSHQTASAVSK Unmodified 2344.0567 0.056746196 84 B4DHC5;A0A024R458;P52594-2;P52594-3;P52594;P52594-4;C9J2I0;B8ZZY2 HRB;AGFG1 Arf-GAP domain and FG repeat-containing protein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 38.415 38.724 3 0.0027602 11887 20181213_JW_Orientia_Karp_2_3 82.265 40.395 69652000 10269000 22543000 15697000 18157000 0 2416700 0 569210 8731 84 7462 52924;52925;52926;52927;52928;52929 33622;33623;33624 33624 3 SSSDASSLHTK Unmodified 1118.5204 0.52038089 1302 Karp_01239 yes yes 0 0 0 0 By MS/MS 1 13.48 13.931 2 0.035822 2294 20181213_JW_Orientia_Karp_3_1 76.17 14.062 710010 0 0 0 0 0 0 710010 0 8732 1302 7463 52930 33625 33625 1 SSSGLLEWESK Unmodified 1221.5877 0.58773217 477 B2R959;Q6NTA2;P14866;M0QXS5;P14866-2;M0QYT0;M0R076 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 50.739 51.061 2 0.0016767 19858 20181213_JW_Orientia_Karp_1_1 119.53 61.979 62992000 25235000 0 18671000 0 4281500 0 12877000 1927500 8733 477 7464 52931;52932;52933;52934;52935;52936;52937 33626;33627;33628;33629;33630;33631 33626 6 SSSGTPDLPVLLTDLK Acetyl (Protein N-term) 1683.8931 0.8930819 1538 V9HW83;V9HVX6;P00352;B4DXX3;Q5SYQ9;Q5SYQ8;Q5SYQ7 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 77.042 77.036 2 1.2402E-19 36003 20181213_JW_Orientia_Karp_1_3 213.84 101.2 230650000 59775000 46142000 37050000 9592900 13456000 9259700 54670000 704250 8734 1538 7465 52938;52939;52940;52941;52942;52943;52944;52945 33632;33633;33634;33635;33636;33637;33638 33634 7 SSSIIQPTGPQPFDLSFFSSTTHGGK Unmodified 2722.3239 0.32385992 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.872 69.042 3 0.00041339 27809 20181213_JW_Orientia_Karp_2_1 88.79 62.328 605590000 125570000 110420000 122420000 28520000 45541000 40096000 106250000 26771000 8735 1193 7466 52946;52947;52948;52949;52950;52951;52952;52953 33639;33640;33641;33642;33643;33644;33645;33646;33647;33648 33643 10 SSSLNMPTNTK Oxidation (M) 1194.5551 0.55505184 1262 Karp_01022 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 21.676 22.008 2 0.033244 4592 20181213_JW_Orientia_Karp_1_2 73.781 40.889 2470800 692330 738960 0 426450 0 405230 0 207820 8736 1262 7467 52954;52955;52956;52957;52958 33649 33649 1 SSSMSINTPTNTPR Oxidation (M) 1507.6937 0.69367058 1266 Karp_01074 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 1 30.953 31.333 2 9.775E-35 8193 20181213_JW_Orientia_Karp_3_1 246.56 145.31 148910000 46469000 31264000 0 15598000 33347000 0 22231000 0 8737 1266 7468 52959;52960;52961;52962;52963;52964;52965;52966;52967 33650;33651;33652;33653;33654;33655;33656;33657;33658 33658 833 9 SSSMSINTPTNTPR Unmodified 1491.6988 0.69875596 1266 Karp_01074 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.695 37.995 2 1.1711E-08 11735 20181213_JW_Orientia_Karp_1_3 194.39 118.33 106310000 22794000 22605000 52298000 0 0 0 8613600 0 8738 1266 7468 52968;52969;52970;52971;52972 33659;33660;33661;33662 33660 4 SSSMSINTPTNTPR Oxidation (M);Deamidation (NQ) 1508.6777 0.67768617 1266 Karp_01074 yes yes 0 1 1 0 By MS/MS 1 32.029 32.379 2 0.012843 9064 20181213_JW_Orientia_Karp_1_2 103.43 43.499 0 0 0 0 0 0 0 0 0 8739 1266 7468 52973 33663 33663 684 833 1 SSSPAPADIAQTVQEDLR Unmodified 1883.9225 0.92248455 1790 Q6FI03;Q5U0Q1;Q53HH4;Q13283;B7Z8K4;Q32P45 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 60.908 61.261 2 0.0015171 25839 20181213_JW_Orientia_Karp_1_3 111.88 74.451 25188000 0 7792500 15176000 0 0 0 0 2219900 8740 1790 7469 52974;52975;52976 33664 33664 1 SSSQAISIIDPNFNGSGFVGK Deamidation (NQ) 2125.0328 0.032763276 1444 Karp_02422 yes yes 0 1 0 0 By MS/MS 1 70.132 70.132 2 1.5091E-07 31835 20181213_JW_Orientia_Karp_1_1 157.37 92.075 5381600 5381600 0 0 0 0 0 0 0 8741 1444 7470 52977 33665;33666;33667 33665 964;965 3 SSSQAISIIDPNFNGSGFVGK 2 Deamidation (NQ) 2126.0168 0.016778861 1444 Karp_02422 yes yes 0 2 0 0 By MS/MS By matching By matching 1 1 1 69.949 70.065 2 0.030853 31711 20181213_JW_Orientia_Karp_1_2 96.435 56.704 4714600 0 2679700 0 1055600 0 979230 0 0 8742 1444 7470 52978;52979;52980 33668 33668 964;965 0 SSSSGSVGESSSK Unmodified 1184.5157 0.51568944 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 7.3959 7.6641 2 0.0029193 1171 20181213_JW_Orientia_Karp_2_3 118.23 61.799 3192400 0 0 86432 524200 653450 664080 620260 643940 + 8743 798 7471 52981;52982;52983;52984;52985;52986;52987 33669;33670;33671;33672;33673;33674 33672 6 SSSVAHIYDK Unmodified 1105.5404 0.54038805 1364 Karp_01859 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 1 2 1 1 1 1 1 25.139 25.445 2;3 0.0087663 6398 20181213_JW_Orientia_Karp_1_1 83.862 25.266 65631000 8910700 23880000 9413400 7601800 4755600 2643500 5115200 3310700 8744 1364 7472 52988;52989;52990;52991;52992;52993;52994;52995;52996;52997 33675;33676;33677 33675 3 SSSVGSSSSYPISPAVSR Unmodified 1753.8483 0.84825697 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;Q96IE3 PLEC;PLEC1 Plectin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 44.366 44.708 2 4.5054E-06 15920 20181213_JW_Orientia_Karp_1_1 149.35 82.012 55146000 15404000 20271000 16230000 0 0 0 2528800 712330 8745 1803 7473 52998;52999;53000;53001;53002 33678;33679 33678 2 SSSVYTTINK Unmodified 1098.5557 0.55570376 1061 Karp_00005 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 32.431 32.431 2 4.742E-06 9557 20181213_JW_Orientia_Karp_1_1 172.59 94.33 24513000 24513000 0 0 0 0 0 0 0 8746 1061 7474 53003;53004 33680;33681 33680 2 SSTDFEEIQK Unmodified 1182.5404 0.54044763 1364 Karp_01859 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.854 38.204 2 7.4736E-05 11963 20181213_JW_Orientia_Karp_1_2 150.27 70.038 52974000 12490000 9967900 20604000 3651400 0 0 6260800 0 8747 1364 7475 53005;53006;53007;53008;53009;53010 33682;33683;33684;33685;33686;33687 33683 6 SSTETCYSAIPK Unmodified 1342.6075 0.60748134 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 36.859 37.193 2 0.023254 11446 20181213_JW_Orientia_Karp_1_2 83.883 5.734 21319000 8709800 9313000 0 0 0 0 3296500 0 8748 1520 7476 53011;53012;53013 33688;33689 33689 2 SSTGPEPPAPTPLLAER Unmodified 1718.8839 0.88391419 2006 Q9UQ35;I3L1I8;I3L182;Q9UQ39;I3L4D8;Q9UQ35-3;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 53.867 54.225 2 0.014623 19790 20181213_JW_Orientia_Karp_2_2 101.32 69.724 32309000 5751500 4753500 9167000 4067200 2909900 3447500 514280 1697900 8749 2006 7477 53014;53015;53016;53017;53018;53019;53020;53021;53022 33690;33691;33692 33692 3 SSVAVLTQESFAEHR Acetyl (Protein N-term) 1701.8322 0.83221298 92 B2R5V9;A0A024R4E5;Q00341;B4DKR8;C9JHS9;C9J739;C9JMQ6;C9JQ82;C9JBS3;C9JEJ8;C9JHN6;C9JT62;C9JHS7;C9JK79;C9JHZ8;C9JES8;C9JZI8;C9J5E5;C9JIZ1 HDLBP Vigilin yes no 1 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.509 59.719 2 2.675E-13 25511 20181213_JW_Orientia_Karp_1_1 203.61 128.67 49198000 12644000 14301000 15243000 0 3631300 3378800 0 0 8750 92 7478 53023;53024;53025;53026;53027;53028 33693;33694;33695;33696;33697;33698 33693 6 SSVELDDELLDPDMDPPHPFPK Unmodified 2492.1417 0.14172138 691 I3L470;B7Z9L3;B4E3N4 CLCN7 Chloride channel protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 1 1 2 77.695 77.686 2;3 0.0046375 36706 20181213_JW_Orientia_Karp_1_3 92.906 29.746 2701100000 630550000 407240000 594510000 267510000 73699000 52899000 674710000 0 8751 691 7479 53029;53030;53031;53032;53033;53034;53035;53036;53037;53038;53039;53040 33699;33700;33701;33702 33700 4 SSVLEALSGVALPR Unmodified 1397.7878 0.78782897 1611;1612 P20591;P20591-2;H9KVC7;H9KVC9;Q75MY7;P20592-2;P20592 MX1;MX2 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed;Interferon-induced GTP-binding protein Mx2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.102 70.246 2 5.3446E-25 31995 20181213_JW_Orientia_Karp_1_1 226.29 153.05 283760000 93164000 38782000 51336000 0 10924000 9398300 66812000 13339000 8752 1611;1612 7480 53041;53042;53043;53044;53045;53046;53047 33703;33704;33705;33706;33707;33708;33709 33703 7 SSVLIAQQTDTSDPEK Unmodified 1717.837 0.83702358 55 Q9BSK3;B4E0U0;B4DY16;A0A024R1U0;P46060 RANGAP1 Ran GTPase-activating protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 41.799 42.032 2 0.001148 13976 20181213_JW_Orientia_Karp_1_3 126.09 80.433 10091000 0 4977200 4160500 0 953400 0 0 0 8753 55 7481 53048;53049;53050 33710;33711 33711 2 SSVNSETLLSQMAYEFR Oxidation (M) 1976.915 0.91495633 1126 Karp_00329 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 57.33 57.647 2 1.2392E-12 24238 20181213_JW_Orientia_Karp_1_1 193.98 130.66 142200000 29925000 39474000 30948000 16519000 0 16088000 9241700 0 8754 1126 7482 53051;53052;53053;53054;53055;53056 33712;33713;33714;33715;33716;33717;33718;33719 33712 661 8 SSVNSETLLSQMAYEFR Oxidation (M);Deamidation (NQ) 1977.899 0.89897191 1126 Karp_00329 yes yes 0 1 1 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 61.625 61.855 2 0.0041095 23834 20181213_JW_Orientia_Karp_2_2 104.7 53.419 33454000 6752000 0 9765100 0 6899200 5350500 4687500 0 8755 1126 7482 53057;53058;53059;53060;53061 33720;33721 33721 514 661 1 SSVNSETLLSQMAYEFR Deamidation (NQ) 1961.9041 0.90405729 1126 Karp_00329 yes yes 0 1 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 73.29 73.334 2 0.00031703 33556 20181213_JW_Orientia_Karp_1_3 138.73 87.45 103510000 32604000 16302000 28318000 0 6594200 5478500 9638700 4578400 8756 1126 7482 53062;53063;53064;53065;53066;53067;53068 33722 33722 514 1 SSVTQIK Unmodified 761.42832 0.42831841 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 22.188 22.452 2 0.012576 4745 20181213_JW_Orientia_Karp_1_2 116.88 44.935 19051000 6232700 6910000 1450700 1907900 911780 973820 663800 0 8757 1169 7483 53069;53070;53071;53072;53073;53074;53075 33723;33724;33725 33724 3 SSYEQVSSIDPK Unmodified 1338.6303 0.63032527 1396 Karp_02152 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 1 39.074 39.401 2 2.6516E-07 12218 20181213_JW_Orientia_Karp_2_3 184.03 94.862 430550000 132580000 129160000 94454000 0 0 10756000 34097000 29503000 8758 1396 7484 53076;53077;53078;53079;53080;53081;53082;53083;53084 33726;33727;33728;33729;33730;33731 33730 6 SSYPGQITGNMICVGFLEGGK Unmodified 2214.0449 0.044924642 787 CON__P00761 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 2 1 69.711 69.836 2 0.018158 31205 20181213_JW_Orientia_Karp_1_3 73.498 43.948 18162000 5680300 0 3460900 0 3532500 0 5487900 0 + 8759 787 7485 53085;53086;53087;53088;53089 33732;33733 33732 2 STAGDTHLGGEDFDNR Unmodified 1690.7183 0.71830543 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PN89;A0A024R6B5;P54652 HEL-S-72p;HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 34.166 34.499 3 0.032231 9307 20181213_JW_Orientia_Karp_2_1 51.727 31.603 77893000 32586000 21822000 14335000 6096100 0 703830 2349800 0 8760 1586 7486 53090;53091;53092;53093;53094;53095 33734 33734 1 STANLQASNASAEVSSK Unmodified 1663.8013 0.80130678 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 32.86 33.13 2 8.6978E-68 9413 20181213_JW_Orientia_Karp_1_2 278.36 211.15 87004000 18891000 29907000 22015000 3283100 12908000 0 0 0 8761 1428 7487 53096;53097;53098;53099;53100;53101;53102 33735;33736;33737;33738;33739 33736 5 STANLQASNASAEVSSK Deamidation (NQ) 1664.7853 0.78532236 1428 Karp_02381 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 36.217 36.501 2 8.7623E-12 10766 20181213_JW_Orientia_Karp_3_1 191.01 142.57 17837000 7152200 0 8927300 0 0 0 1757500 0 8762 1428 7487 53103;53104;53105;53106;53107 33740;33741;33742;33743 33742 949 4 STATFAVEMR Oxidation (M) 1127.5281 0.5281088 1392 Karp_02141 yes yes 0 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 36.849 37.139 2 0.040139 10946 20181213_JW_Orientia_Karp_3_1 69.275 39.609 75752000 28010000 22209000 16237000 0 3135700 0 6160500 0 8763 1392 7488 53108;53109;53110;53111;53112 33744 33744 1 STATISGLKPGVDYTITVYAVTGR Unmodified 2469.3115 0.31150432 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 62.461 62.678 3 0.00043458 27052 20181213_JW_Orientia_Karp_1_2 106.69 76.943 100700000 31153000 20279000 33557000 1342000 9159900 5204700 0 0 8764 85 7489 53113;53114;53115;53116;53117;53118 33745;33746;33747 33746 3 STAYEDYYYHPPPR Unmodified 1757.7686 0.76855009 469 Q0VGD6;B2R7W4;O43390;B4DT28;B4DMB1;Q6MZS5;O43390-4;O43390-3;O43390-2;B4DMD1;Q7Z334 HNRPR;HNRNPR;DKFZp686A13234;DKFZp686O0665 Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.89 41.19 3 0.0020852 13324 20181213_JW_Orientia_Karp_1_3 107.09 75.384 103450000 35575000 27230000 18015000 2724900 9279300 0 10625000 0 8765 469 7490 53119;53120;53121;53122;53123;53124 33748;33749;33750 33750 3 STDVISTEAGGITQHIGAYK Unmodified 2047.0222 0.02219859 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 50.743 51.086 2 2.4234E-16 19820 20181213_JW_Orientia_Karp_1_1 183.06 134.95 52138000 14951000 14729000 8503700 0 0 3377000 10040000 536880 8766 1366 7491 53125;53126;53127;53128;53129;53130;53131 33751;33752;33753;33754;33755 33751 5 STEEIYNQR Unmodified 1138.5255 0.52546627 1312 Karp_01264 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 28.992 29.255 2 4.8134E-10 7558 20181213_JW_Orientia_Karp_1_2 214.64 146.66 12901000 10208000 0 0 1209500 831680 652080 0 0 8767 1312 7492 53132;53133;53134;53135;53136 33756;33757;33758;33759;33760 33757 5 STEINLAEAYGTADTK Unmodified 1682.7999 0.79990979 1141 Karp_00453 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.779 51.089 2 5.4592E-20 19479 20181213_JW_Orientia_Karp_1_2 220.99 170.79 87786000 36468000 27740000 3751300 9627100 8392900 0 0 1805600 8768 1141 7493 53137;53138;53139;53140;53141;53142 33761;33762;33763;33764 33761 4 STELLIR Unmodified 830.48617 0.48616764 1749;1853 P68431;Q71DI3;Q16695;Q5TEC6 HIST1H3A;HIST2H3A;HIST3H3;HIST2H3PS2 Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 1 2 1 1 1 1 42.643 42.948 2 0.0044915 14266 20181213_JW_Orientia_Karp_1_2 164.89 36.51 19545000000 9736600000 5220300000 3284200000 130350000 51427000 56034000 1053400000 12427000 8769 1749;1853 7494 53143;53144;53145;53146;53147;53148;53149;53150;53151;53152;53153 33765;33766;33767;33768;33769;33770;33771 33767 7 STELTVDFSQVEK Unmodified 1481.725 0.72495394 1175 Karp_00629 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.362 55.678 2 1.8179E-45 20771 20181213_JW_Orientia_Karp_2_3 261.35 156.93 375820000 106740000 70853000 102910000 25337000 35304000 29548000 0 5130900 8770 1175 7495 53154;53155;53156;53157;53158;53159;53160 33772;33773;33774;33775;33776;33777;33778;33779 33778 8 STESLQANVQR Unmodified 1231.6157 0.61567826 357 Q6NZ55;A8K4C8;P26373;J3QSB4 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 30.445 30.795 2 7.8363E-10 8750 20181213_JW_Orientia_Karp_1_1 208.11 133.07 26147000 12871000 4135100 5661300 972560 915690 0 1591700 0 8771 357 7496 53161;53162;53163;53164;53165;53166 33780;33781;33782;33783;33784 33780 4 STESYFIPEVR Unmodified 1326.6456 0.6455814 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;A0A075B727;A0A075B728;A0A075B737 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 55.538 55.88 2 0.0016976 23067 20181213_JW_Orientia_Karp_1_1 119.22 59.293 237170000 92052000 68532000 50040000 25955000 0 0 0 595260 8772 274 7497 53167;53168;53169;53170;53171 33785;33786 33785 2 STEVEVLLPK Unmodified 1113.6281 0.62814043 24 A0A024QZT4;P50453;Q6N0A8 SERPINB9;DKFZp686O07189 Serpin B9 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.063 53.313 2 0.0020926 19338 20181213_JW_Orientia_Karp_2_1 114.89 46.524 39196000 16912000 5496900 9061200 2454200 1511600 3760000 0 0 8773 24 7498 53172;53173;53174;53175;53176;53177 33787;33788;33789 33787 3 STFVLDEFK Unmodified 1084.5441 0.54407645 1634 Q53YD7;P26641;P26641-2;B4DUP0 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.344 58.631 2 0.00024793 24460 20181213_JW_Orientia_Karp_1_2 166.3 115.59 182630000 111130000 33974000 21742000 691970 4381800 6357200 0 4355000 8774 1634 7499 53178;53179;53180;53181;53182;53183;53184 33790;33791;33792;33793;33794;33795 33791 6 STGEAFVQFASQEIAEK Unmodified 1840.8843 0.88430813 888 E9PCY7;G8JLB6;P31943;E5RGV0;D6RIU0;D6RBM0;H0YB39;P55795;E5RGH4;E7EN40;B4DFK9 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 62.233 62.54 2 1.1703E-32 26557 20181213_JW_Orientia_Karp_1_3 278.36 185.75 173530000 54678000 33791000 54864000 3630600 9649500 9457000 33340 7429900 8775 888 7500 53185;53186;53187;53188;53189;53190;53191;53192 33796;33797;33798;33799;33800;33801;33802 33798 7 STGGAPTFNVTVTK Unmodified 1378.7092 0.70924429 1567 P07737;K7EJ44 PFN1 Profilin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.189 46.558 2 0.00052055 15597 20181213_JW_Orientia_Karp_3_1 147.96 107.08 1025300000 0 0 259420000 281840000 167920000 162940000 48338000 104830000 8776 1567 7501 53193;53194;53195;53196;53197;53198 33803;33804;33805;33806;33807;33808 33807 6 STGNFLTLTQAIDK Unmodified 1507.7882 0.7882229 491 Q9H8E3;B4E266;B4DER1;B2RCM2;B4DJ10;Q9P2J5;Q9NVP8;Q2TU79;A2RRR4 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 61.303 61.681 2 0.0016618 26145 20181213_JW_Orientia_Karp_1_3 142.76 87.302 8651700 0 0 6035600 0 1199000 0 491350 925740 8777 491 7502 53199;53200;53201;53202;53203 33809;33810 33810 2 STGTLLNNAIK Unmodified 1130.6295 0.62953741 786 CON__ENSEMBL:ENSBTAP00000024146 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 42.75 43.05 2 0.0015764 14392 20181213_JW_Orientia_Karp_1_3 120.99 63.13 17714000 5324000 5822800 3268900 0 0 0 3298500 0 + 8778 786 7503 53204;53205;53206;53207 33811;33812 33811 2 STHQAAIVSK Unmodified 1040.5615 0.56145784 622 B4DPW5;B7Z6G4;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682;E9PGZ1;Q9NYG1;B4E3I0;C9J813 CALD1 Caldesmon yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 17.059 17.289 2 0.013841 2884 20181213_JW_Orientia_Karp_1_3 87.806 40.232 3344500 558020 699900 613410 833270 0 0 639940 0 8779 622 7504 53208;53209;53210;53211;53212 33813 33813 1 STIDYFSEIEQAMLLPLK Oxidation (M) 2113.0653 0.065308958 1398 Karp_02184 yes yes 0 0 1 0 By matching By MS/MS 1 1 75.026 75.025 2 0.0020656 34651 20181213_JW_Orientia_Karp_1_3 103.97 61.88 14315000 8047600 0 6267800 0 0 0 0 0 8780 1398 7505 53213;53214 33814 33814 1006 1 STIIDHQLYDINMQIGK Unmodified 1988.0037 0.0037117545 1112 Karp_00294 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 58.583 58.85 3 0.018021 22580 20181213_JW_Orientia_Karp_2_3 65.652 39.506 24808000 0 9087000 10430000 0 0 5290500 0 0 8781 1112 7506 53215;53216;53217 33815 33815 1 STILQLLIK Unmodified 1027.6641 0.664132 1429 Karp_02383 yes yes 0 0 0 0 By MS/MS 1 69.048 69.197 2 0.0044226 31125 20181213_JW_Orientia_Karp_1_2 131.22 70.251 0 0 0 0 0 0 0 0 0 8782 1429 7507 53218 33816 33816 1 STITSREIQTAVR Unmodified 1460.7947 0.79470526 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;Q99880;P23527;P33778;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BO;HIST1H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 33.254 33.579 3 0.005355 9621 20181213_JW_Orientia_Karp_1_3 119.21 71.986 95446000 32510000 30298000 28850000 2159400 0 0 1628900 0 8783 449;1624;1817 7508 53219;53220;53221;53222;53223;53224 33817;33818 33818 2 STLDISNQK Unmodified 1004.5138 0.51383895 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 31.127 31.426 2 0.0074455 8562 20181213_JW_Orientia_Karp_1_3 99.136 38.658 21137000 6154200 9093400 5504000 0 0 0 0 385810 8784 1376 7509 53225;53226;53227;53228 33819;33820 33820 2 STLDLLLPK Unmodified 998.6012 0.60119739 1207 Karp_00849 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 63.89 64.103 2 0.00092956 27388 20181213_JW_Orientia_Karp_1_3 132.76 78.209 192820000 34747000 24434000 69680000 143410 45437000 16347000 0 2026100 8785 1207 7510 53229;53230;53231;53232;53233;53234;53235;53236;53237;53238;53239;53240 33821;33822;33823;33824;33825 33823 5 STLLNMIVGK Oxidation (M) 1090.6056 0.60563084 1315 Karp_01271 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.812 54.078 2 4.9726E-06 21482 20181213_JW_Orientia_Karp_1_2 169.44 94.395 89493000 27791000 16485000 11282000 8058300 9254600 16621000 0 0 8786 1315 7511 53241;53242;53243;53244;53245;53246 33826;33827;33828;33829;33830;33831 33827 868 6 STLLNMIVGK Unmodified 1074.6107 0.61071622 1315 Karp_01271 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 63.211 63.454 2 2.0705E-09 24550 20181213_JW_Orientia_Karp_2_2 209.19 134.94 43158000 12685000 2775900 18252000 0 5425100 3064700 0 955030 8787 1315 7511 53247;53248;53249;53250;53251;53252 33832;33833;33834;33835;33836 33834 5 STLNEIYFGK Unmodified 1170.5921 0.59208927 467 B2R7T8;P47756-2;B1AK87;B1AK88;B4DWA6;P47756;Q7L4N0 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 51.615 51.96 2 5.6861E-05 19993 20181213_JW_Orientia_Karp_1_3 163.38 108.27 185410000 49557000 39046000 50521000 18808000 7462800 14155000 3943200 1917300 8788 467 7512 53253;53254;53255;53256;53257;53258;53259;53260 33837;33838;33839 33838 3 STLQTLPEIVAK Unmodified 1298.7446 0.74456717 840 D3DVQ1;O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 55.234 55.552 2 0.0017304 22993 20181213_JW_Orientia_Karp_1_1 117.25 77.402 96182000 15547000 9640700 69037000 1844100 0 0 0 113340 8789 840 7513 53261;53262;53263;53264;53265;53266 33840;33841;33842 33840 3 STLQTMESDIYTEVR Oxidation (M) 1787.8247 0.82474434 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 48.363 48.538 2 4.1762E-09 18133 20181213_JW_Orientia_Karp_1_1 190.78 121.11 104150000 27041000 33214000 31824000 0 12076000 0 0 0 8790 224 7514 53267;53268;53269;53270 33843;33844 33843 172 2 STLQTMESDIYTEVR Unmodified 1771.8298 0.82982971 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 58.59 58.84 2 3.5272E-63 24275 20181213_JW_Orientia_Karp_1_3 285.38 190.91 117340000 34600000 29034000 44808000 4405400 4492800 0 0 0 8791 224 7514 53271;53272;53273;53274;53275 33845;33846;33847;33848 33847 4 STLTDSLVCK Unmodified 1122.5591 0.55907458 1593 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 EEF2 Elongation factor 2 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 44.244 44.511 2 7.7252E-05 15237 20181213_JW_Orientia_Karp_1_3 149.72 96.784 58242000 20374000 14475000 9030400 0 2239700 2391600 9731200 0 8792 1593 7515 53276;53277;53278;53279;53280;53281 33849;33850;33851 33849 3 STLYVSPHPDAFPSLR Acetyl (Protein N-term) 1827.9155 0.91554867 246 A0A024RCN6;P26640;B4DT32;A2ABF4 VARS Valine--tRNA ligase yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 65.974 66.123 2 0.00011451 28774 20181213_JW_Orientia_Karp_1_3 133.15 75.8 44064000 19593000 11716000 9549700 1127000 0 2077900 0 0 8793 246 7516 53282;53283;53284;53285;53286 33852;33853;33854 33854 3 STMGAGADPNVGAAAAEESADEIK Oxidation (M) 2277.0067 0.00668446 1404 Karp_02212 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 46.798 47.132 2;3 8.289E-46 16950 20181213_JW_Orientia_Karp_1_2 238.88 192.99 90741000 30629000 10939000 16767000 16947000 4369800 4971700 973000 5145700 8794 1404 7517 53287;53288;53289;53290;53291;53292;53293;53294;53295;53296 33855;33856;33857;33858;33859;33860;33861;33862 33856 1014 8 STMGAGADPNVGAAAAEESADEIK Unmodified 2261.0118 0.011769838 1404 Karp_02212 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 2 50.197 50.509 2;3 3.305E-45 19450 20181213_JW_Orientia_Karp_1_1 233.79 182.78 95965000 40212000 20380000 14181000 5843200 3104500 2112200 10132000 0 8795 1404 7517 53297;53298;53299;53300;53301;53302;53303;53304;53305 33863;33864;33865;33866;33867 33863 5 STMGAGADPNVGAAAAEESADEIKR Oxidation (M) 2433.1078 0.10779549 1404 Karp_02212 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 42.225 42.525 3 0.0037488 13244 20181213_JW_Orientia_Karp_2_2 63.125 35.996 126750000 32111000 38017000 23287000 9074100 8639600 0 15618000 0 8796 1404 7518 53306;53307;53308;53309;53310;53311 33868;33869;33870;33871;33872 33871 1014 5 STMGAGADPNVGAAAAEESADEIKR Unmodified 2417.1129 0.11288087 1404 Karp_02212 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 45.461 45.704 3 0.013872 16013 20181213_JW_Orientia_Karp_1_2 61.985 35.99 78495000 13109000 21921000 25014000 0 12880000 1636000 0 3935400 8797 1404 7518 53312;53313;53314;53315;53316;53317 33873 33873 1 STMQELNSR Oxidation (M);Deamidation (NQ) 1081.471 0.47098786 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 21.49 21.769 2 1.3145E-05 4118 20181213_JW_Orientia_Karp_2_3 195.57 91.207 35953000 3032100 6393300 5602100 7317700 2795200 5060200 5752000 0 + 8798 1653 7519 53318;53319;53320;53321;53322;53323;53324 33874;33875;33876;33877;33878;33879;33880;33881;33882 33881 1104 1276 9 STMQELNSR Unmodified 1064.4921 0.49205765 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 27.689 28.06 2 1.0078E-20 7040 20181213_JW_Orientia_Karp_1_2 242.39 124.58 172040000 32893000 32010000 37340000 23073000 9899100 7661300 23654000 5510300 + 8799 1653 7519 53325;53326;53327;53328;53329;53330;53331;53332 33883;33884;33885;33886;33887 33884 5 STMQELNSR Oxidation (M) 1080.487 0.48697227 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 1 18.569 18.983 2 4.3907E-21 3580 20181213_JW_Orientia_Karp_2_3 249.03 169.57 250740000 0 24896000 30742000 59756000 11717000 42606000 44379000 36641000 + 8800 1653 7519 53333;53334;53335;53336;53337;53338;53339;53340;53341 33888;33889;33890;33891;33892;33893;33894;33895;33896 33894 1276 9 STRKYLQPDNLSK 2 Deamidation (NQ) 1550.794 0.79403656 728 E9PBP6;B7Z7X3;P55157 MTTP Microsomal triglyceride transfer protein large subunit yes no 0 2 0 2 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 47.098 47.47 2 0.032213 16030 20181213_JW_Orientia_Karp_3_1 96.171 38.64 153010000 36590000 39516000 42796000 5773500 0 9030800 5330500 13974000 8801 728 7520 53342;53343;53344;53345;53346;53347;53348 33897 33897 238;1609 1 STSAPQMSPGSSDNQSSSPQPAQQK Unmodified 2531.1194 0.11942281 666 B4DZJ6;F8W726;B4DYY5;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS 1 33.327 33.327 3 0.015858 9956 20181213_JW_Orientia_Karp_1_1 92.8 67.39 3311900 3311900 0 0 0 0 0 0 0 8802 666 7521 53349 33898 33898 1 STSAPQMSPGSSDNQSSSPQPAQQK Oxidation (M) 2547.1143 0.11433743 666 B4DZJ6;F8W726;B4DYY5;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 1 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 26.867 27.227 3 0.010889 6233 20181213_JW_Orientia_Karp_2_3 59.918 39.662 8985100 0 0 1767600 2334900 1191400 1612800 2078500 0 8803 666 7521 53350;53351;53352;53353;53354 33899 33899 409 1 STSGVILFK Unmodified 950.54368 0.54368251 1139 Karp_00451 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.912 49.162 2 0.0016713 17013 20181213_JW_Orientia_Karp_2_1 122.18 79.307 31371000 7712900 7287000 4429100 6874200 2004300 3063300 0 0 8804 1139 7522 53355;53356;53357;53358;53359;53360 33900;33901;33902;33903;33904;33905 33903 6 STSIQSFK Unmodified 896.46035 0.46034682 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;B4DG31;A7E2S2;B4DI60 PLS3 Plastin-3 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 31.488 31.762 2 0.0099327 9083 20181213_JW_Orientia_Karp_1_1 104.06 35.27 41483000 10214000 22934000 8143200 192400 0 0 0 0 8805 623 7523 53361;53362;53363;53364 33906 33906 1 STSQGSINSPVYSR Unmodified 1481.711 0.71103521 525 J3QSX6;Q5JVV3;B3KSG3;H0Y3K7;F8W8M4;Q5T6N4;O14639-4;O14639-3;O14639-5;Q5T6N2;O14639-2;B3KVH2;O14639;B4DQA3;B7Z4H1;H0Y7N6;F6XFR5 ABLIM1 Actin-binding LIM protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 35.181 35.554 2 1.574E-11 10596 20181213_JW_Orientia_Karp_1_2 196.7 70.879 50873000 14593000 13338000 9502200 2808500 2230100 0 6550900 1850500 8806 525 7524 53365;53366;53367;53368;53369;53370;53371 33907;33908;33909;33910;33911;33912 33908 6 STSSFSCLSR Unmodified 1130.5026 0.50262234 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 35.58 35.924 2 0.024214 10827 20181213_JW_Orientia_Karp_1_2 81.525 38.661 98727000 33470000 15145000 17002000 0 0 3713900 24916000 4479800 + 8807 804;1657 7525 53372;53373;53374;53375;53376;53377 33913 33913 1 STSSLLETSDNNLK Unmodified 1507.7366 0.73658126 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By MS/MS 1 2 43.245 43.529 2 8.8344E-35 14929 20181213_JW_Orientia_Karp_1_2 248.98 81.051 28539000 0 24694000 0 0 0 3845100 0 0 8808 1374 7526 53378;53379;53380 33914;33915 33914 2 STSSLLETSDNNLK Deamidation (NQ) 1508.7206 0.72059684 1374 Karp_02110 yes yes 0 1 0 0 By MS/MS By matching 1 1 45.554 45.984 2 0.010233 16328 20181213_JW_Orientia_Karp_1_2 107.34 20.195 19018000 0 16151000 0 0 0 0 0 2867200 8809 1374 7526 53381;53382 33916 33916 855 1 STTAIVSTVTPPSPTTFIPAAFSK Unmodified 2420.2839 0.28389259 1154 Karp_00560 yes yes 0 0 0 0 By MS/MS By matching 1 1 72.903 73.027 2 0.018582 33652 20181213_JW_Orientia_Karp_1_2 61.444 34.438 21099000 0 11529000 9570200 0 0 0 0 0 8810 1154 7527 53383;53384 33917 33917 1 STTPDITGYR Unmodified 1109.5353 0.53530267 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 39.35 39.525 2 0.010964 12507 20181213_JW_Orientia_Karp_1_3 91.584 45.426 438540000 180630000 110150000 113910000 0 33841000 0 0 0 8811 85 7528 53385;53386;53387;53388 33918;33919 33919 2 STTTGDTICSLDSQIILEK Unmodified 2081.0198 0.019815329 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 61.533 61.852 2;3 1.7764E-66 24129 20181213_JW_Orientia_Karp_2_1 306.05 224.42 422700000 77687000 66028000 135480000 163650 52084000 45228000 5150300 40879000 8812 1094 7529 53389;53390;53391;53392;53393;53394;53395;53396;53397;53398;53399;53400;53401;53402;53403 33920;33921;33922;33923;33924;33925;33926;33927;33928;33929;33930;33931 33924 12 STTTGHLIYK Unmodified 1119.5924 0.59242362 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;Q6IQ15;Q53GA1;Q9H2I7;Q05639;A6PW80;Q5JR01;Q6NS35;Q6NSH7 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 26.324 26.698 2 0.0031748 5409 20181213_JW_Orientia_Karp_2_2 109.48 59.942 255530000 66672000 103410000 53563000 7530400 4758400 0 13612000 5979700 8813 1746 7530 53404;53405;53406;53407;53408;53409;53410 33932;33933;33934;33935;33936;33937 33935 6 STTTLIGQDAK Unmodified 1133.5928 0.59281755 1250 Karp_00927 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.406 34.779 2 0.00026224 10672 20181213_JW_Orientia_Karp_1_1 152.04 101.91 377710000 81429000 100570000 87047000 27526000 14432000 0 48542000 18162000 8814 1250 7531 53411;53412;53413;53414;53415;53416;53417;53418 33938;33939;33940;33941;33942 33938 5 STVEGIQASVK Unmodified 1117.5979 0.59790293 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 36.328 36.618 2 0.00036008 11121 20181213_JW_Orientia_Karp_1_2 147.3 80.134 60747000 14473000 16234000 19782000 0 1580400 0 8677200 0 8815 19 7532 53419;53420;53421;53422;53423 33943;33944;33945 33944 3 STVHEILCK Acetyl (Protein N-term) 1127.5645 0.56449431 124 V9HW65;A0A024R5Z7;P07355;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YKS4;B4DNH8;H0YNP5;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 1 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 43.96 44.225 2 0.0001927 14395 20181213_JW_Orientia_Karp_3_1 158.07 113.96 1184400000 443650000 416940000 299770000 0 0 0 0 24053000 8816 124 7533 53424;53425;53426;53427;53428;53429;53430 33946;33947;33948;33949;33950 33949 5 STVLQQQYNR Unmodified 1235.6258 0.62584901 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 32.23 32.573 2 2.5833E-12 9127 20181213_JW_Orientia_Karp_1_3 207.29 135.6 49633000 10054000 19478000 10842000 0 0 541240 5674800 3041700 8817 2016 7534 53431;53432;53433;53434;53435;53436 33951;33952;33953;33954;33955 33953 5 STVQQLNEK Unmodified 1045.5404 0.54038805 1256 Karp_00936 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 24.04 24.365 2 0.00068468 5533 20181213_JW_Orientia_Karp_1_2 152.06 61.46 25692000 0 14255000 3812500 1621300 1477800 1101700 3424100 0 8818 1256 7535 53437;53438;53439;53440;53441;53442 33956;33957 33957 2 STYDQLGHQAFK Unmodified 1393.6626 0.66262845 1073 Karp_00049 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 36.822 37.099 3 0.042403 11836 20181213_JW_Orientia_Karp_1_1 59.367 18.891 268570000 87348000 78490000 70290000 0 15722000 8178600 0 8536400 8819 1073 7536 53443;53444;53445;53446;53447;53448 33958 33958 1 SVDEILNR Unmodified 944.49271 0.49270958 1201 Karp_00820 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 41.685 42.015 2 0.0041872 13829 20181213_JW_Orientia_Karp_1_3 141.52 30.483 584890000 214710000 150610000 107100000 4417600 50320000 0 57005000 730340 8820 1201 7537 53449;53450;53451;53452;53453;53454;53455 33959;33960;33961;33962;33963 33961 5 SVDEVFDEVVQIFDK Unmodified 1767.8567 0.85669639 461 B2R6S5;P30085-2;P30085;B4DDL4 CMPK;CMPK1 UMP-CMP kinase yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 77.472 77.436 2 2.6589E-05 31239 20181213_JW_Orientia_Karp_3_2 161.48 112.29 15067000 0 0 0 0 3064900 3340200 6771700 1890300 8821 461 7538 53456;53457;53458;53459 33964;33965;33966 33966 3 SVDFDSLTVR Unmodified 1137.5666 0.5666028 2018 Q9Y5K6 CD2AP CD2-associated protein yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.159 54.469 2 0.0005069 22120 20181213_JW_Orientia_Karp_1_1 134.23 75.412 77708000 22392000 0 23535000 10136000 10675000 10240000 0 730120 8822 2018 7539 53460;53461;53462;53463;53464;53465 33967;33968 33967 2 SVDPTLALSVYLR Unmodified 1432.7926 0.79257999 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By matching 1 1 71.722 71.846 2 0.037958 32844 20181213_JW_Orientia_Karp_1_2 73.9 23.867 5358400 0 2723900 2634500 0 0 0 0 0 8823 1757 7540 53466;53467 33969 33969 1 SVDWHAAK Unmodified 912.44537 0.44536545 1123 Karp_00323 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 24.571 24.888 2 0.027998 5349 20181213_JW_Orientia_Karp_2_1 83.753 30.043 8177100 0 3429100 0 2375500 2372400 0 0 0 8824 1123 7541 53468;53469;53470 33970;33971 33971 2 SVEEEEQVWR Unmodified 1289.5888 0.58879481 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 41.972 42.302 2 0.00061722 14592 20181213_JW_Orientia_Karp_1_1 132.01 57.845 38086000 16297000 8829100 8702100 736140 0 0 3521700 0 8825 279 7542 53471;53472;53473;53474;53475 33972;33973 33972 2 SVEELLEAELLK Unmodified 1371.7497 0.74971212 128 A0A024R663;Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2;G3V4Y7;H0YJZ8;G3V5G2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS 1 72.436 72.486 2 0.0024922 26641 20181213_JW_Orientia_Karp_3_1 156.48 110.88 0 0 0 0 0 0 0 0 0 8826 128 7543 53476 33974 33974 1 SVELEEALPVTTAEGMAK Acetyl (Protein N-term);Oxidation (M) 1931.9398 0.93977409 1926 Q92522 H1FX Histone H1x yes yes 1 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 72.837 72.896 2 8.9614E-07 29466 20181213_JW_Orientia_Karp_3_2 154.47 87.317 283300000 87572000 33411000 61495000 0 14983000 20052000 35172000 30615000 8827 1926 7544 53477;53478;53479;53480;53481;53482;53483 33975;33976;33977;33978;33979 33979 1502 4 SVELEEALPVTTAEGMAK Acetyl (Protein N-term) 1915.9449 0.94485947 1926 Q92522 H1FX Histone H1x yes yes 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 74.545 74.575 2 0.00019422 34630 20181213_JW_Orientia_Karp_1_2 132.86 71.422 153930000 53980000 43280000 40414000 482850 2951200 3435900 0 9388600 8828 1926 7544 53484;53485;53486;53487;53488;53489;53490;53491 33980;33981;33982;33983;33984;33985 33981 6 SVFGGLVNYFK Unmodified 1229.6445 0.64445919 1533 O95721;C9JAF7 SNAP29 Synaptosomal-associated protein 29;Synaptosomal-associated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.071 67.4 2 3.5277E-07 29929 20181213_JW_Orientia_Karp_1_2 186.41 111.49 8741100 0 1974300 0 0 0 0 0 6766700 8829 1533 7545 53492;53493;53494;53495;53496 33986;33987;33988;33989;33990 33986 5 SVGDGETVEFDVVEGEK Unmodified 1794.816 0.81595379 1745;204 P67809;Q6PKI6;Q05D43;Q7KZ24;H0Y449;B2RCC2;Q9Y2T7;Q59HE1;A0A024RAV4;A0A024RAQ1;P16989-2;P16989-3;P16989;Q59EB5 YBX1;YBX2;CSDA;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 56.361 56.824 2 1.0677E-100 21306 20181213_JW_Orientia_Karp_2_1 305.6 231.65 261240000 0 0 0 114460000 85575000 60744000 139810 325820 8830 1745;204 7546 53497;53498;53499;53500;53501 33991;33992;33993;33994 33991 4 SVGELPSTVESLQK Unmodified 1472.7722 0.77223848 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.54 50.885 2 1.5767E-07 17241 20181213_JW_Orientia_Karp_3_1 182.92 109.08 178070000 50742000 51047000 28244000 10995000 9551200 9974900 12499000 5014300 8831 224 7547 53502;53503;53504;53505;53506;53507;53508;53509 33995;33996;33997;33998;33999 33998 5 SVGELVENQFR Unmodified 1276.6412 0.64116473 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.132 50.402 2 0.00023485 18789 20181213_JW_Orientia_Karp_1_3 169.76 93.661 138150000 40777000 35164000 28778000 18950000 0 14479000 0 0 8832 1170 7548 53510;53511;53512;53513;53514 34000;34001;34002 34002 2 SVGGSGGGSFGDNLVTR Unmodified 1565.7434 0.74339797 1543 P02545;P02545-3;P02545-5;P02545-4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.482 45.802 2 1.6325E-16 16444 20181213_JW_Orientia_Karp_1_1 201.08 125.43 220480000 64730000 48084000 61067000 10074000 8397000 8667500 7016600 12447000 8833 1543 7549 53515;53516;53517;53518;53519;53520;53521;53522 34003;34004;34005;34006;34007;34008;34009;34010;34011 34003 9 SVGSQWASPENPCLINECVR Unmodified 2302.047 0.047049907 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By matching 1 1 56.526 56.701 2 9.1881E-17 23593 20181213_JW_Orientia_Karp_1_1 220.25 161 32821000 12066000 20755000 0 0 0 0 0 0 8834 1466;1549 7550 53523;53524 34012 34012 1 SVHELEK Unmodified 840.43413 0.43413207 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 14.997 15.266 2 0.023111 2652 20181213_JW_Orientia_Karp_1_1 98.418 11.946 10408000 2524000 4124900 2256100 491680 0 0 1011600 0 8835 47 7551 53525;53526;53527;53528;53529 34013;34014 34013 2 SVIEDVINDVR Unmodified 1257.6565 0.65648044 1027 J3KNC0;P52655 GTF2A1 Transcription initiation factor IIA subunit 1;Transcription initiation factor IIA alpha chain;Transcription initiation factor IIA beta chain yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 63.302 63.469 2 0.0005703 24597 20181213_JW_Orientia_Karp_2_2 138.25 82.788 22510000 0 0 12084000 0 8491600 1934200 0 0 8836 1027 7552 53530;53531;53532 34015 34015 1 SVIEQGGIQTVDQLIK Unmodified 1726.9465 0.94651445 576 B7Z5C1;B4DHD2;Q4W4Y1;Q8WUM4;Q8WUM4-2 DRIP4;PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 62.662 62.887 2 1.3103E-13 27141 20181213_JW_Orientia_Karp_1_2 203.85 131.96 42278000 16651000 11775000 13275000 576730 0 0 0 0 8837 576 7553 53533;53534;53535;53536 34016;34017;34018 34017 3 SVIVVGPELK Unmodified 1039.6277 0.6277465 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 51.331 51.633 2 0.0010552 20294 20181213_JW_Orientia_Karp_1_1 123.21 73.79 111040000 35827000 25063000 11345000 21706000 4731200 12200000 0 166590 8838 1169 7554 53537;53538;53539;53540;53541;53542;53543;53544 34019;34020;34021;34022;34023;34024;34025 34019 7 SVKGEVVSSTFDEPAVR Unmodified 1805.9159 0.9159426 1333 Karp_01373 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 42.081 42.402 3 0.015066 13460 20181213_JW_Orientia_Karp_2_1 88.319 57.836 70035000 23438000 17775000 0 8740500 3958200 0 16123000 0 8839 1333 7555 53545;53546;53547;53548;53549 34026 34026 1 SVLGDVGITEVFSDR Unmodified 1592.8046 0.80460124 803 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 2 1 1 70.241 70.368 2 1.6096E-62 31534 20181213_JW_Orientia_Karp_1_3 280.21 235.78 1676600000 398290000 135730000 118720000 131350000 215330000 132460000 541670000 3014200 + 8840 803 7556 53550;53551;53552;53553;53554;53555;53556;53557;53558;53559;53560 34027;34028;34029;34030;34031;34032;34033;34034;34035;34036 34030 10 SVLTCELQEGVCAK Unmodified 1592.7538 0.753828 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 49.548 49.907 2 6.0849E-08 18509 20181213_JW_Orientia_Karp_1_3 190.53 118.44 196520000 76186000 40623000 43902000 13901000 12080000 0 114290 9710800 8841 1169 7557 53561;53562;53563;53564;53565;53566;53567 34037;34038;34039;34040 34039 4 SVLWGFINK Unmodified 1062.5862 0.58621603 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 63.102 63.395 2 0.00024676 27454 20181213_JW_Orientia_Karp_1_2 169.06 102.26 42498000 0 7612700 15228000 0 9165000 6909300 0 3582800 8842 1118 7558 53568;53569;53570;53571;53572 34041;34042;34043;34044;34045;34046;34047 34041 7 SVMTEEYK Oxidation (M) 1001.4376 0.43756246 638 B4E0X8;B4DWL1;E9PEB5;B4DT31;Q96AE4;Q96AE4-2;Q6PJY1;C9JSZ1 FUBP1 Far upstream element-binding protein 1 yes no 0 0 1 0 By MS/MS 1 22.597 22.949 2 0.021569 4001 20181213_JW_Orientia_Karp_2_2 84.916 32.232 765660 0 0 0 0 765660 0 0 0 8843 638 7559 53573 34048 34048 396 1 SVNESLNNLFITEEDYQALR Unmodified 2354.139 0.13901926 1757 Q00610-2;Q00610;J3KS13;K7EJJ5 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 70.089 70.253 3 0.0011575 25300 20181213_JW_Orientia_Karp_3_1 100.28 76.646 29020000 11630000 0 7213200 0 0 0 8502400 1674000 8844 1757 7560 53574;53575;53576;53577 34049;34050;34051 34051 3 SVPAFIDISEEDQAAELR Acetyl (Protein N-term) 2030.9797 0.97966507 637 E9PRI2;E7ESM3;B4DT09;Q7L2H7 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 76.813 76.812 2 0.00047634 35832 20181213_JW_Orientia_Karp_1_3 126.16 78.169 58024000 18236000 14269000 9270900 3286300 0 1854900 11106000 0 8845 637 7561 53578;53579;53580;53581;53582;53583 34052;34053;34054;34055;34056 34054 5 SVPTSTVFYPSDGVATEK Unmodified 1883.9153 0.9152739 527 B3KSI4;V9HWD9;Q53EM5;P29401;P29401-2;B4DVU1;B4E022;B3KPZ8 HEL107;TKT Transketolase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.843 54.2 2 0.0091182 21519 20181213_JW_Orientia_Karp_1_2 120.29 73.557 108780000 27814000 21948000 28460000 9623400 9113500 4453500 2150000 5218900 8846 527 7562 53584;53585;53586;53587;53588;53589;53590;53591 34057;34058;34059 34058 3 SVRYSSSK Acetyl (Protein N-term) 954.47706 0.47705951 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 1 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 22.582 22.972 2 0.030803 4785 20181213_JW_Orientia_Karp_3_1 93.598 8.6821 3738500 496890 0 653210 0 0 0 1250200 1338100 + 8847 798 7563 53592;53593;53594;53595 34060 34060 1 SVSIAMLSNVFIPK Oxidation (M) 1520.8273 0.82725094 1167 Karp_00621 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 2 1 2 2 69.568 69.726 2 0.0040982 31842 20181213_JW_Orientia_Karp_1_1 110.08 29.061 101410000 28575000 11565000 15661000 4969700 10786000 2988000 20821000 6040900 8848 1167 7564 53596;53597;53598;53599;53600;53601;53602;53603;53604;53605;53606;53607;53608;53609;53610 34061;34062;34063;34064;34065 34061 703 5 SVSIAMLSNVFIPK Unmodified 1504.8323 0.83233632 1167 Karp_00621 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 73.019 73.077 2 0.0050132 27012 20181213_JW_Orientia_Karp_3_1 109.72 50.568 122160000 35912000 27692000 21263000 0 6528900 6261000 20485000 4013700 8849 1167 7564 53611;53612;53613;53614;53615;53616;53617 34066;34067;34068;34069;34070;34071 34070 6 SVSIGYLLVK Unmodified 1077.6434 0.64339656 265 A0A024RDW8;P08572;B4DH43 COL4A2 Collagen alpha-2(IV) chain;Canstatin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.081 60.331 2 4.4868E-05 25992 20181213_JW_Orientia_Karp_1_1 156.75 124.14 31193000 9403700 3523100 8594000 873910 4553200 4245000 0 0 8850 265 7565 53618;53619;53620;53621;53622;53623 34072;34073;34074;34075;34076;34077 34072 6 SVSLRPEFTASIMR Oxidation (M) 1608.8294 0.8293762 1179 Karp_00654 yes yes 0 0 1 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 47.125 47.435 3 0.040632 17193 20181213_JW_Orientia_Karp_1_2 83.499 39.253 92481000 23904000 25120000 22893000 9559100 0 8882800 0 2121300 8851 1179 7566 53624;53625;53626;53627;53628;53629 34078 34078 1 SVSLTGAPESVQK Unmodified 1301.6827 0.68269519 1930 Q92945;M0R0I5;M0QYH3;M0QXW7 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.485 39.802 2 6.5322E-05 13301 20181213_JW_Orientia_Karp_1_1 168.22 88.055 131930000 25268000 34975000 27849000 9804700 9519600 0 24514000 0 8852 1930 7567 53630;53631;53632;53633;53634;53635 34079;34080;34081;34082;34083;34084 34079 6 SVSMYNK Oxidation (M) 843.37965 0.37965365 1321 Karp_01283 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 15.876 16.125 2 0.030312 2566 20181213_JW_Orientia_Karp_1_3 85.359 50.159 10946000 5493000 2101800 2400800 636840 0 0 313550 0 8853 1321 7568 53636;53637;53638;53639;53640 34085;34086 34086 2 SVTDYAQQNPAAQIPAR Unmodified 1828.9068 0.9067749 884 Q9UM54-6;E7EW20 MYO6 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 48.118 48.418 2 9.5695E-07 17481 20181213_JW_Orientia_Karp_1_3 160.86 118.38 31919000 9002600 12112000 10693000 0 0 0 111110 0 8854 884 7569 53641;53642;53643;53644 34087;34088 34088 2 SVTEQGAELSNEER Unmodified 1547.7063 0.70634376 824 D0PNI1;P63104;E7EX29;E7ESK7;E5RGE1;E5RIR4;E9PD24;E7EVZ2;Q6LD62 YWHAZ;14-3-3 protein 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.271 33.593 2 1.351E-42 9391 20181213_JW_Orientia_Karp_3_1 296.28 164.86 76416000 45758000 0 16604000 5710700 2482300 0 0 5862000 8855 824 7570 53645;53646;53647;53648;53649;53650;53651 34089;34090;34091;34092;34093;34094;34095;34096 34094 8 SVTSANIEIDNCDTK Unmodified 1665.7516 0.75157939 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 41.973 42.357 2 3.0384E-27 13551 20181213_JW_Orientia_Karp_3_1 265.77 201.55 49607000 0 13757000 0 0 3690900 0 32158000 0 8856 1251 7571 53652;53653;53654 34097;34098 34098 2 SVTSANIEIDNCDTK Deamidation (NQ) 1666.7356 0.73559498 1251 Karp_00928 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.335 44.645 2 0.013192 15470 20181213_JW_Orientia_Karp_1_2 101.53 78.971 21088000 5925200 4412200 4719600 0 2131100 0 3343100 556670 8857 1251 7571 53655;53656;53657;53658;53659;53660 34099;34100 34099 653 2 SVTVVEDDEDEDGDDLLHHHHVSGSR Unmodified 2898.2652 0.26523542 1544;1851 P02545-2;W8QEH3;Q3BDU5;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 37.395 37.795 5 0.03905 11741 20181213_JW_Orientia_Karp_1_2 31.75 14.949 78633000 0 25951000 28741000 4715300 0 2868000 16357000 0 8858 1544;1851 7572 53661;53662;53663;53664;53665 34101 34101 1 SVVSVIHLTGIIGK Unmodified 1421.8606 0.86059998 1160 Karp_00595 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 58.595 58.855 3 0.00040668 24295 20181213_JW_Orientia_Karp_1_3 133.98 105.07 123660000 44665000 45705000 18341000 0 5219000 7384000 0 2349300 8859 1160 7573 53666;53667;53668;53669;53670;53671 34102;34103;34104;34105;34106 34104 5 SVVTGGVQSVMGSR Oxidation (M) 1378.6875 0.68746299 1515 O60664-4;O60664-3;O60664;K7ERZ3;K7EL96 PLIN3 Perilipin-3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 36.152 36.422 2 1.2917E-05 11089 20181213_JW_Orientia_Karp_1_2 174.21 134.34 26045000 9040100 8050200 7551100 886140 0 517040 0 0 8860 1515 7574 53672;53673;53674;53675;53676 34107;34108;34109 34108 1122 3 SWHDVQVSSAYVK Unmodified 1504.731 0.73104237 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q53GA0;B4DDV4;Q5J908 TPD52L2 Tumor protein D54 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 41.876 42.126 3 0.01525 12991 20181213_JW_Orientia_Karp_2_2 93.649 38.949 65290000 32934000 0 13700000 0 3936800 3684900 11034000 0 8861 1507 7575 53677;53678;53679;53680;53681 34110;34111 34110 2 SWHPEEFNCAHCK Unmodified 1700.6824 0.68239439 257;732 A0A024RDE8;Q96HC4;F5H7Y0;Q96HC4-7;Q96HC4-4;Q96HC4-6;H0Y8Y3;B7Z8X5;Q59FC9 PDLIM5 PDZ and LIM domain protein 5 no no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 30.388 30.771 3 0.036555 7920 20181213_JW_Orientia_Karp_3_1 50.467 25.29 14363000 6448400 1016800 3758800 1055400 338850 240510 525940 978120 8862 257;732 7576 53682;53683;53684;53685;53686;53687;53688;53689 34112 34112 1 SWNETLTSR Unmodified 1092.52 0.51998696 1526 O75947;O75947-2;F5H608;A0PJH2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.535 39.843 2 0.00046539 12116 20181213_JW_Orientia_Karp_2_1 160.36 67.218 409130000 149660000 64506000 94532000 16971000 16984000 7604500 58870000 0 8863 1526 7577 53690;53691;53692;53693;53694;53695;53696 34113;34114;34115;34116;34117;34118;34119 34116 7 SWQDELAQQAEEGSAR Unmodified 1803.8024 0.80236941 180 A0A024R9D2;Q86UE4 MTDH Protein LYRIC yes no 0 0 0 0 By MS/MS 1 53.059 53.409 2 0.0020507 21136 20181213_JW_Orientia_Karp_1_2 117 73.197 7459900 0 7459900 0 0 0 0 0 0 8864 180 7578 53697 34120 34120 1 SWQGTADGGMMDR Oxidation (M) 1426.5605 0.56054792 346 B7Z5X3;B7ZLP5;A8K329;Q15424;Q15424-4;Q15424-3;B7Z1C7;B7Z2F6;B7Z2Z1;Q15424-2;B7Z959 SAFB Scaffold attachment factor B1 yes no 0 0 1 0 By MS/MS By matching 1 1 34.916 35.015 2 0.014485 10770 20181213_JW_Orientia_Karp_1_1 88.021 65.379 4271600 2178400 0 2093200 0 0 0 0 0 8865 346 7579 53698;53699 34121 34121 235;236 1 SWQGTADGGMMDR 2 Oxidation (M) 1442.5555 0.55546254 346 B7Z5X3;B7ZLP5;A8K329;Q15424;Q15424-4;Q15424-3;B7Z1C7;B7Z2F6;B7Z2Z1;Q15424-2;B7Z959 SAFB Scaffold attachment factor B1 yes no 0 0 2 0 By matching By MS/MS By matching 1 1 1 28.631 29.063 2 0.0033067 7017 20181213_JW_Orientia_Karp_2_1 110.64 91.322 4553900 0 0 2137300 846860 0 0 1569700 0 8866 346 7579 53700;53701;53702 34122 34122 235;236 1 SWTAADMAAQLTK Unmodified 1392.6708 0.6707503 2020 R4QU15 HLA-A yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 56.51 56.86 2 3.6055E-12 23304 20181213_JW_Orientia_Karp_1_2 209.19 0 36765000 0 36765000 0 0 0 0 0 0 8867 2020 7580 53703;53704 34123;34124 34124 2 SWTAADMAAQTTK Oxidation (M) 1396.6293 0.62927941 267;709;857;1906;2066;755 A0A060CZ20;I7EQF7;A7MAE1;X5CHJ2;X2J3V4;W8YM39;W8E988;W6SQV0;W6SNC0;W0T236;W0FF27;V9VYY9;U6EV21;U5XMI1;U4QB70;T2MJ84;T1WQ06;T1RT90;S5NIY1;S0F3H7;S0F0M8;R9WAS6;R9RVK4;Q8MHP8;Q8MHP7;Q75WB6;Q75NJ3;Q6L6R5;Q6F3I9;Q68Y63;Q60I39;Q5W9R8;Q5R1M0;Q5EPE9;Q546Q4;Q546F7;Q540M3;Q4VYE6;Q4LAU0;Q308P3;N1NSY8;N0GWB7;N0AAA5;M5AUI8;M4VSA0;M4VMS8;M4VLP5;M4QNU4;M1KQ42;L7XDT5;L7XDE9;L7WM55;I7HAR2;I6Z8E6;I6QTM5;I2GUK0;I2GUJ9;I2G8B5;I1VXM3;I1VXL9;H9BE43;H9BB16;G9IHU5;G8GBV1;G8GBV0;G8FQ52;G0M6G2;F5BZ30;F5ATC5;F4ZZU3;E9ABI2;E5BBI6;E3UM70;E3Q1V2;E2GD50;E0WMV7;E0WMV2;D7GLM1;D5L6G2;D5H3I6;D3YLL2;D2KZ31;D2KZ29;D2KZ27;D1H0T8;C6L835;B9W1S7;B6ECH5;B5A516;B3V990;B0LV24;A7WPI9;A7LKN0;A6N9E1;A5A4L6;A4UUL3;A0A061CVW2;I2GAD7;F0VRV9;D5H3V7;D5H3U0;D5H3T3;Q8WLS4;A5I8L1;U5YMN5;U5YMN1;U5YMG9;U5YMG4;U5YMF9;U5YKE8;U5YKE0;U5YJM1;U5YJI7;U5YJI3;U5YJG6;H2DDR7;F6IQV5;F6IQV4;F6IQV3;F6IQV2;F6IQV1;F6IQV0;F6IQU9;F6IQU8;F6IQT2;F6IQS9;F6IQS6;F6IQS5;F6IQS4;F6IQS3;F6IQS2;F6IQS1;B0BKZ4;A5PHT6;X5MPH1;X5MNS3;A0A060VHG8;A0A060VHD9;A0A060VG17;Q861F7;Q861F6;Q8HX85;O78126;O19642;W1I6E7;S6FW97;S6AU97;Q9TQB6;Q9TQ73;Q9TQ65;Q704F3;Q53Z42;Q3LRR6;Q2LC95;P79603;I6YAY1;G9FXD6;E5FQ49;D9UB09;D9UB07;D7GNM8;D5H3T6;D5H3T4;D5H3T1;C5IWX9;C5IWX5;B2LT55;A5A4G3;P01892;R9WXA9;W8NKY4;G3C9V4;S5T475;Q9BD14;Q95IB1;Q4VYU3;Q206J8;N1NUT9;M9TME2;M1XK38;D7NMJ8;D1H0T5;B0LV25;V9W2L5;V5NE49;V5L197;Q6L6Q3;Q6L6P9;Q6L676;Q4W6C5;Q4W6C3;M9R0Q6;M4VMS3;M4VJS4;M4NJR5;I7ARY8;I3VB20;H2D5G1;G9HRQ8;G9G815;G9FTK1;G4XZE8;F8WSJ2;F8WS75;F2XI29;E3WH34;D2KZ35;D2KZ30;D1J6X4;B1Q4W3;B1Q4R7;B1B727;B1B6Q5;B1B6Q4;A8ILL3;F2XI28;L7WQ81;A0A061A7U0;T1WGK5;K4TZQ2;G1UK07;F2X5P6;D3YLL1;D2KZ37;B2DFV9;A2V815;Q29757;Q06FC3;Q4JLV8;Q6VS85;A7MAP2;D5H3T7;U5YJN4;U5YJP4;U5YJN8;F6IQT1;U5YMP0;U5YMH5;U5YKE3;U5YJP1;U5YJJ1;F6IQU6;F6IQU5;F6IQU4;F6IQU3;F6IQU2;F6IQU1;F6IQU0;F6IQT9;F6IQT8;F6IQT7;F6IQT6;F6IQT5;F6IQT0;F6IQT3;U5YJH8;F6IQU7;A0A060VD05;W0UTP4;I3ZN76;Q95J05;Q8HWQ9;Q8HWQ8;Q5MAG5;C5IWY8;C5IWX6;V6A6U0;E3Q1L4;Q3LRR7;D7GM34;Q52QV5;P10316;Q50I06;I3VB19;B3GUH8;N1NT54;M4RBI8;M1JPA6;L7XEN4;J7RT43;J7JQD3;S0F3A9;R4RUH0;R4L0K0;Q1W4D6;Q0PMJ8;M4RBI3;I6R1A7;E5FYM9;C6H0P0;Q6R741;B6E278;E7BDE1;Q704T5;Q6IV49;K0P0H0;A6YT91;B2G3G4;Q5G274;S6A6J7;F6IQT4;F6IR57;F6IR56;F6IR55;F6IR54;A0A060VG23;X5MNS5;A0A060VHJ3;A0A060VCY9;A0A060VCY8;A0A060VCU4;X5MBG6;Q9GJ24;A4UTT5;D5H3T9;A5JUX0;E5FQ45;U6A3P1;Q1ELT0;I3ZN80;B1PKZ2;P01891;O02922;Q9UQT7;F8KA50;C5J4N4;I4EPY0;Q9MYB7;A0A060VCW9;Q8MGT5;A0N0E2;D7GN80;B7XGC2;Q9TPQ6;M1F4B6;K7P5I8;I6TMZ2;G0KXH3;D3U474;C5IZN8;D9IDV1;Q8MHN8;C8ZLL1;X2L7S8;Q29945;Q29947 HLA-A;HLA;MHC class I HLA-A;HLA-A*0226;HLA-A*02;HLA A HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain no no 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 34.387 34.72 2 2.3434E-11 10654 20181213_JW_Orientia_Karp_1_1 199.8 44.267 83657000 17122000 22897000 25028000 5449600 4914800 0 8245000 0 8868 267;709;755;857;1906;2066 7581 53705;53706;53707;53708;53709;53710 34125 34125 188 1 SWVNQMESQTGEASK Oxidation (M) 1696.7363 0.73626368 235 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 1 0 By MS/MS 1 33.472 33.472 2 0.012793 10000 20181213_JW_Orientia_Karp_1_1 88.78 45.361 8190500 8190500 0 0 0 0 0 0 0 8869 235 7582 53711 34126 34126 174 1 SWVNQMESQTGEASK Unmodified 1680.7413 0.74134906 235 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 44.451 44.716 2 4.4836E-38 15305 20181213_JW_Orientia_Karp_1_3 286.53 226.43 35018000 10284000 11620000 12628000 0 0 0 0 486250 8870 235 7582 53712;53713;53714;53715 34127;34128;34129 34129 3 SYEDMIGEEVPSDQYYWAPLAQHER Unmodified 3012.3236 0.32360192 781 Q96FS1;Q68DU0;C9JZR2;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;O60716-7;O60716-5;O60716-3;O60716-6;O60716-4;O60716-2;O60716 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 0 0 0 0 By matching By MS/MS 1 1 67.399 67.623 3 0.014991 29766 20181213_JW_Orientia_Karp_1_3 51.568 21.823 13499000 0 4614300 8884800 0 0 0 0 0 8871 781 7583 53716;53717 34130 34130 1 SYEIMFR Oxidation (M) 960.4375 0.43750288 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 45.483 45.658 2 0.028657 15844 20181213_JW_Orientia_Karp_1_3 86.472 48.312 57392000 19535000 20606000 16163000 0 1087800 0 0 0 8872 195 7584 53718;53719;53720;53721 34131 34131 1 SYELPDGQVITIGNER Unmodified 1789.8846 0.88464248 1717;1743;351;1836 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q5T8M7;B3KUD3;B3KW67;Q13707;B4DUI8;P63267-2;K4EQ44;K4EP00;K4ENJ5;B3KPP5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q6S8J3;Q96FU6;A5A3E0;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9BYX7;G8FSY7;P63261;B4E3A4;B4DVQ0;Q562R1 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;HEL-176;POTEE;POTEF;POTEKP;ACTBL2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 4 3 1 1 4 3 2 61.035 61.32 2;3 2.1541E-49 23889 20181213_JW_Orientia_Karp_2_1 267.77 189.26 9217000000 2579500000 1834900000 2992800000 675680000 10098000 505290000 177920000 440820000 8873 351;1717;1743;1836 7585 53722;53723;53724;53725;53726;53727;53728;53729;53730;53731;53732;53733;53734;53735;53736;53737;53738;53739;53740;53741;53742;53743 34132;34133;34134;34135;34136;34137;34138;34139;34140;34141;34142;34143;34144;34145 34140 14 SYELPDGQVITIGNER Deamidation (NQ) 1790.8687 0.86865806 1717;1743;351;1836 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q5T8M7;B3KUD3;B3KW67;Q13707;B4DUI8;P63267-2;K4EQ44;K4EP00;K4ENJ5;B3KPP5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;V9HVZ7;Q6S8J3;Q96FU6;A5A3E0;A4UCT3;A5GZ75;Q96DE1;F1BXA6;Q9BYX7;G8FSY7;P63261;B4E3A4;B4DVQ0;Q562R1 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;HEL-176;POTEE;POTEF;POTEKP;ACTBL2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 2 2 3 2 64.583 64.836 2;3 2.7406E-19 27569 20181213_JW_Orientia_Karp_1_2 212.55 142.14 1187600000 338750000 285560000 289250000 17501000 95847000 66767000 73205000 20726000 8874 351;1717;1743;1836 7585 53744;53745;53746;53747;53748;53749;53750;53751;53752;53753;53754;53755;53756;53757;53758;53759;53760;53761;53762;53763 34146;34147;34148;34149;34150;34151;34152;34153;34154;34155;34156;34157;34158;34159;34160 34150 139 12 SYGLDTHTLK Unmodified 1133.5717 0.57168818 1191 Karp_00710 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 2 2 2 1 2 2 35.207 35.573 2;3 3.0882E-05 10638 20181213_JW_Orientia_Karp_1_2 159.79 95.528 966410000 146640000 182420000 211930000 79042000 167350000 1425800 111920000 65686000 8875 1191 7586 53764;53765;53766;53767;53768;53769;53770;53771;53772;53773;53774;53775;53776;53777 34161;34162;34163;34164;34165;34166 34162 6 SYGLFEGLK Unmodified 1012.5229 0.52294707 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 55.813 56.151 2 0.0044811 21074 20181213_JW_Orientia_Karp_2_3 106.68 59.026 61028000 0 0 14960000 0 10076000 20900000 15092000 0 8876 1449 7587 53778;53779;53780;53781 34167;34168;34169;34170 34169 4 SYGPAPGAGHVQEESNLSLQALESR Unmodified 2596.2518 0.25175761 27 B2R7M3;A0A024QZY1;Q13155 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 51.628 51.888 3 7.6541E-06 20022 20181213_JW_Orientia_Karp_1_2 118.05 96.882 52677000 10450000 26224000 9199100 0 3920500 2571300 0 312360 8877 27 7588 53782;53783;53784;53785;53786;53787 34171;34172;34173;34174;34175 34172 5 SYGRPPPDVEGMTSLK Acetyl (Protein N-term);Oxidation (M) 1790.8509 0.85089951 172 B3KX15;J3QL05;J3KP15;Q6NXQ0;Q8N220;B3KVY2;B3KUF7;Q8NAK9;Q53FN0;A0A024R8U5;Q01130-2;Q01130 SRSF2;SFRS2 Serine/arginine-rich splicing factor 2 yes no 1 0 1 1 By MS/MS 1 45.824 45.975 2 0.0079795 15102 20181213_JW_Orientia_Karp_2_2 88.224 54.224 0 0 0 0 0 0 0 0 0 8878 172 7589 53788 34176 34176 136 1 SYHEEFNPPK Unmodified 1246.5619 0.56185177 943 F8W1A4;P54819-3;P54819-5;P54819-2;P54819;F8VY04;P54819-4;P54819-6 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 30.253 30.633 3 0.007073 8710 20181213_JW_Orientia_Karp_1_1 93.598 60.738 13022000 6349500 3201000 0 1144000 1244500 0 1083200 0 8879 943 7590 53789;53790;53791;53792;53793 34177;34178;34179 34177 3 SYIESPER Unmodified 979.46108 0.4610751 1417 Karp_02254 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 32.279 32.462 2 0.02189 9065 20181213_JW_Orientia_Karp_1_3 87.181 34.395 43524000 13473000 18601000 11450000 0 0 0 0 0 8880 1417 7591 53794;53795;53796 34180 34180 1 SYLTEQVNQDLPK Unmodified 1533.7675 0.76748745 1818 Q6IB91;Q16822;H0YML5;B4DW73 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 50.221 50.488 2 1.1509E-07 19056 20181213_JW_Orientia_Karp_1_2 191.26 129.7 68146000 18788000 22668000 15831000 0 2695500 2376400 5787300 0 8881 1818 7592 53797;53798;53799;53800;53801;53802 34181;34182;34183;34184;34185 34183 5 SYNPFDDDGEDEGARPAPWR Unmodified 2292.9672 0.96720291 1533 O95721 SNAP29 Synaptosomal-associated protein 29 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 54.371 54.637 3 0.019172 20255 20181213_JW_Orientia_Karp_2_3 77.027 40.813 53747000 13752000 7046000 13851000 4481200 8098500 6518200 0 0 8882 1533 7593 53803;53804;53805;53806;53807;53808 34186 34186 1 SYQDPSNAQFLESIR Unmodified 1753.8271 0.8271276 1826 Q53FF5;Q53FE8;Q9UNZ2;Q9UNZ2-5;F2Z2K0;Q9UNZ2-6;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.715 56.999 2 1.2646E-06 21539 20181213_JW_Orientia_Karp_2_3 177.38 109.45 38634000 13922000 8957100 6375900 0 5236900 4092100 49955 0 8883 1826 7594 53809;53810;53811;53812;53813;53814;53815 34187;34188;34189;34190;34191;34192;34193 34193 7 SYQYVYVMK Unmodified 1179.5634 0.56343168 1315 Karp_01271 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 47.594 47.988 2 0.020227 16589 20181213_JW_Orientia_Karp_2_3 83.998 47.441 104460000 0 39435000 23893000 12759000 6789700 9033900 87271 12462000 8884 1315 7595 53816;53817;53818;53819;53820;53821;53822 34194;34195;34196 34196 3 SYSPYDMLESIR Oxidation (M) 1475.6602 0.66024519 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;A6NMY6;H0YM50;B3KRQ1;H0YN28;H0YL33 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 53.894 54.252 2 0.00023087 20044 20181213_JW_Orientia_Karp_2_3 157.38 117.76 472080000 136570000 95291000 112760000 40543000 40617000 34348000 1650200 10297000 8885 124 7596 53823;53824;53825;53826;53827;53828;53829;53830 34197;34198;34199;34200;34201;34202;34203 34202 109 7 SYSPYDMLESIR Unmodified 1459.6653 0.66533057 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;A6NMY6;H0YM50;B3KRQ1;H0YN28;H0YL33 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 66.004 66.164 2 0.0090366 25473 20181213_JW_Orientia_Karp_3_2 99.343 61.999 352770000 117810000 47386000 145460000 0 19233000 9820300 0 13059000 8886 124 7596 53831;53832;53833;53834;53835;53836 34204;34205 34205 2 SYSPYDNIK Unmodified 1085.5029 0.50293991 1216 Karp_00883 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 2 2 37.904 38.254 2 0.031129 11667 20181213_JW_Orientia_Karp_3_1 77.318 43.145 211130000 65257000 47661000 59376000 9834100 12267000 0 16739000 0 8887 1216 7597 53837;53838;53839;53840;53841;53842;53843;53844 34206;34207 34207 2 SYSSTLTDMGR Oxidation (M) 1232.5343 0.53431639 735 H7BZK1;B7Z997;O94875-9;O94875-7;O94875;O94875-11;H7C1R7;B3KPU4;H7BXR3;O94875-5;O94875-3;O94875-8;O94875-2;O94875-4;O94875-12;O94875-10 SORBS2 Sorbin and SH3 domain-containing protein 2 yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 33.093 33.356 2 0.0028077 8393 20181213_JW_Orientia_Karp_2_2 112.11 71.12 9871900 3599500 0 0 3635500 1803100 833820 0 0 8888 735 7598 53845;53846;53847;53848 34208;34209 34208 434 2 SYSTDSEVLENLSR Unmodified 1598.7424 0.74239491 1329 Karp_01364 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 52.362 52.724 2 0.00065831 18366 20181213_JW_Orientia_Karp_3_1 142.83 89.263 34200000 10136000 12219000 9018700 0 0 0 2398700 427510 8889 1329 7599 53849;53850;53851;53852;53853 34210;34211;34212 34212 3 SYTATEFLQDTK Unmodified 1402.6616 0.6616254 1295 Karp_01184 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 50.744 51.014 2 0.01298 19204 20181213_JW_Orientia_Karp_1_3 92.943 60.337 12832000 7321600 0 5171400 0 0 0 0 339520 8890 1295 7600 53854;53855;53856 34213 34213 1 SYTITGLQPGTDYK Unmodified 1542.7566 0.75658842 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 1 50.603 50.932 2 3.4324E-25 19298 20181213_JW_Orientia_Karp_1_2 252.96 166.06 1119700000 302930000 281300000 244370000 69008000 54874000 54515000 86453000 26226000 8891 85 7601 53857;53858;53859;53860;53861;53862;53863;53864;53865;53866;53867 34214;34215;34216;34217;34218;34219;34220;34221;34222 34216 9 SYTLAIK Unmodified 794.4538 0.45380487 1093 Karp_00242 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 40.873 41.173 2 0.0091746 13549 20181213_JW_Orientia_Karp_1_2 149.4 38.766 243940000 86928000 40015000 50109000 29783000 11134000 0 25970000 0 8892 1093 7602 53868;53869;53870;53871;53872;53873;53874 34223;34224;34225;34226;34227;34228 34224 6 SYVTTSTR Unmodified 913.45051 0.45051041 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 23.598 24.017 2 0.0042154 5329 20181213_JW_Orientia_Karp_1_3 136.27 90.316 552290000 0 347000000 66058000 34684000 27807000 0 45737000 30999000 8893 1571 7603 53875;53876;53877;53878;53879;53880;53881 34229;34230;34231;34232;34233;34234 34229 6 TAAALAPASLTSAR Unmodified 1299.7147 0.71466402 2006 Q9UQ35;O60382 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 46.053 46.326 2 0.012178 16456 20181213_JW_Orientia_Karp_1_2 94.767 36.397 45103000 10099000 9713700 12586000 5625900 1313100 2723200 0 3043000 8894 2006 7604 53882;53883;53884;53885;53886;53887;53888 34235;34236;34237;34238;34239;34240 34236 6 TAAANAAAGAAENAFR Unmodified 1475.7117 0.71170391 1494 Q6FHJ5;O14828-2;O14828 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 42.655 43.042 2 0.0054088 13885 20181213_JW_Orientia_Karp_3_1 102.33 59.983 14128000 0 0 8630200 2625700 0 404590 2467600 0 8895 1494 7605 53889;53890;53891;53892 34241 34241 1 TAADTAAQITQR Unmodified 1245.6313 0.63132832 858 D9UB12 HLA-B no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 33.959 34.259 2 0.000708 10418 20181213_JW_Orientia_Karp_1_1 143 87.428 19116000 7702900 3687600 6017000 0 0 0 1708200 0 8896 858 7606 53893;53894;53895;53896;53897;53898 34242;34243;34244;34245;34246 34242 4 TAAENDFVTLK Unmodified 1207.6085 0.60846762 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.375 46.695 2 4.255E-09 16386 20181213_JW_Orientia_Karp_1_3 197.21 104.05 240740000 39858000 54568000 28081000 37448000 19686000 36921000 1791300 22383000 + 8897 804;1657 7607 53899;53900;53901;53902;53903;53904;53905;53906 34247;34248;34249;34250;34251;34252;34253;34254 34249 8 TAAENDFVTLKK Unmodified 1335.7034 0.70343063 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 36.444 36.745 3 0.0053476 10776 20181213_JW_Orientia_Karp_3_1 117.95 87.926 58672000 23285000 12018000 0 0 8189200 4088300 11091000 0 + 8898 804;1657 7608 53907;53908;53909;53910;53911 34255;34256;34257 34257 2 TAAENEFVVLK Unmodified 1219.6449 0.64485312 811;809 CON__Q3KNV1;P08729;CON__P08729;B3KY79;CON__Q14CN4-1;CON__Q6IME9;Q14CN4-3;Q14CN4-2;Q14CN4;B4DXK4 KRT7;KRT72 Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 72 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 50.542 50.809 2 3.1408E-09 19307 20181213_JW_Orientia_Karp_1_2 200.71 5.7705 194090000 59423000 64152000 42155000 0 7513300 17009000 3834000 0 + 8899 811;809 7609 53912;53913;53914;53915;53916;53917;53918;53919;53920 34258;34259;34260;34261;34262;34263;34264;34265;34266 34259 9 TADGIVSHLK Unmodified 1039.5662 0.56620887 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 32.876 33.166 2 0.0074875 9097 20181213_JW_Orientia_Karp_3_1 97.965 41.155 49659000 16292000 14045000 12348000 0 0 1955000 5018700 0 8900 516 7610 53921;53922;53923;53924;53925 34267 34267 1 TADVAGDGTTTATVIADAAVR Unmodified 1974.9858 0.98581308 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 9 11 9 7 8 4 7 59.666 59.944 2;3 4.8806E-91 23254 20181213_JW_Orientia_Karp_1_2 349.57 261.43 5130100000 1175400000 1424300000 1254200000 245700000 356230000 290160000 258210000 125820000 8901 1296 7611 53926;53927;53928;53929;53930;53931;53932;53933;53934;53935;53936;53937;53938;53939;53940;53941;53942;53943;53944;53945;53946;53947;53948;53949;53950;53951;53952;53953;53954;53955;53956;53957;53958;53959;53960;53961;53962;53963;53964;53965;53966;53967;53968;53969;53970;53971;53972;53973;53974;53975;53976;53977;53978;53979;53980;53981;53982;53983;53984;53985;53986;53987;53988;53989;53990;53991;53992;53993;53994 34268;34269;34270;34271;34272;34273;34274;34275;34276;34277;34278;34279;34280;34281;34282;34283;34284;34285;34286;34287;34288;34289;34290;34291;34292;34293;34294;34295;34296;34297;34298;34299;34300;34301;34302;34303;34304;34305;34306;34307;34308;34309;34310;34311 34278 43 TAEAQLAYELQGAR Unmodified 1519.7631 0.76307078 11 Q6FG43;J3QLD9;A0A024QZ62;E7EMK3;Q14254;K7EKW9;Q9BTI6 FLOT2;hCG_1998851 Flotillin-2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 50.305 50.575 2 0.0014208 19164 20181213_JW_Orientia_Karp_1_2 131.06 83.873 27951000 11887000 6760000 5664300 0 1490900 0 2149000 0 8902 11 7612 53995;53996;53997;53998;53999 34312 34312 1 TAESQTPTPSATSFFSGK Unmodified 1842.8636 0.86357268 3 D3DV75;B7Z8Y3;H0YCK3;A0A024DAK3;Q59EC0;P55265-5;P55265-3;P55265-2;P55265;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By matching 1 1 52.446 52.771 2 0.010773 21053 20181213_JW_Orientia_Karp_1_1 105.58 64.042 11694000 9640600 0 0 0 0 0 2052900 0 8903 3 7613 54000;54001 34313 34313 1 TAFDDAIAELDTLNEDSYK Unmodified 2129.9641 0.96407459 556 B4DE78;P61981;B3KNB4;B4DHC4 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 73.783 73.812 2;3 2.5793E-32 34135 20181213_JW_Orientia_Karp_1_2 253.06 196.86 269800000 112830000 62137000 75632000 153880 4051200 0 14996000 0 8904 556 7614 54002;54003;54004;54005;54006;54007;54008;54009;54010;54011 34314;34315;34316;34317 34315 4 TAFDEAIAELDTLNEDSYK Unmodified 2143.9797 0.97972465 1635 P27348;B4DMT8;B4DY04;Q53S41 YWHAQ 14-3-3 protein theta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 73.848 73.864 2;3 3.5957E-11 27497 20181213_JW_Orientia_Karp_3_1 191.4 164.28 156530000 61315000 34527000 57163000 0 3522600 0 0 0 8905 1635 7615 54012;54013;54014;54015;54016;54017;54018;54019 34318;34319;34320;34321;34322;34323;34324 34324 7 TAFDEAIAELDTLNEESYK Unmodified 2157.9954 0.99537472 1650 V9HWD6;P31946-2;P31946 HEL-S-1;YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 2 1 1 73.861 73.88 2;3 7.0819E-121 34183 20181213_JW_Orientia_Karp_1_1 398.06 338.91 384440000 157920000 101690000 99393000 0 10538000 5209200 9623500 68274 8906 1650 7616 54020;54021;54022;54023;54024;54025;54026;54027;54028;54029;54030 34325;34326;34327;34328;34329;34330;34331 34326 7 TAFDEAIAELDTLSEESYK Unmodified 2130.9845 0.98447568 824 D0PNI1;P63104;E7EX29;B0AZS6;P63104-2;B7Z2E6;H0YB80;Q2F831 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 2 75.135 75.143 2;3 1.351E-84 30662 20181213_JW_Orientia_Karp_2_3 367.23 297.38 461160000 172770000 86663000 81213000 6941200 31525000 29785000 52258000 0 8907 824 7617 54031;54032;54033;54034;54035;54036;54037;54038;54039;54040;54041 34332;34333;34334;34335;34336;34337;34338 34337 7 TAFIALIK Unmodified 875.54804 0.54803961 1239 Karp_00906 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.497 57.747 2 0.00487 23929 20181213_JW_Orientia_Karp_1_2 124.59 53.216 124090000 26382000 26492000 34902000 4223800 7716800 24373000 0 0 8908 1239 7618 54042;54043;54044;54045;54046;54047;54048 34339;34340;34341;34342;34343;34344;34345 34340 7 TAFQEALDAAGDK Unmodified 1335.6307 0.63065962 1012 H9ZYJ2;P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 49.043 49.438 2 6.237E-05 16294 20181213_JW_Orientia_Karp_3_2 168.76 99.161 753940000 0 169340000 168870000 142330000 70663000 137240000 546660 64953000 8909 1012 7619 54049;54050;54051;54052;54053;54054;54055 34346;34347;34348;34349 34348 4 TAGNANPELINEILHTK Unmodified 1833.9585 0.95847612 1317 Karp_01279 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 56.382 56.739 3 5.0333E-07 21323 20181213_JW_Orientia_Karp_2_3 159.14 130.56 944180000 155030000 268670000 185660000 128090000 107220000 99367000 79514 58866 8910 1317 7620 54056;54057;54058;54059;54060;54061;54062;54063 34350;34351;34352;34353;34354;34355;34356 34356 7 TAGNANPELINEILHTK Deamidation (NQ) 1834.9425 0.94249171 1317 Karp_01279 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 2 1 2 1 54.789 55.105 3 0.0021176 17282 20181213_JW_Orientia_Karp_3_1 112.57 84.024 182670000 48281000 19248000 43959000 10632000 36328000 11062000 11399000 1756800 8911 1317 7620 54064;54065;54066;54067;54068;54069;54070;54071;54072;54073;54074;54075;54076 34357;34358;34359;34360 34360 751;752 4 TAGPLESSETEEASQLK Unmodified 1775.8425 0.84250289 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 43.299 43.626 2 6.2449E-54 15244 20181213_JW_Orientia_Karp_1_1 264.09 193.68 69503000 21785000 20752000 18549000 0 0 2036100 4570400 1810100 8912 279 7621 54077;54078;54079;54080;54081;54082 34361;34362;34363;34364;34365 34361 5 TAGWNIPMGLLYSK Oxidation (M) 1565.7912 0.79119978 808 CON__Q29443;CON__Q0IIK2 yes no 0 0 1 0 By matching By MS/MS 1 1 64.999 65.248 2 0.0042696 25799 20181213_JW_Orientia_Karp_2_3 109.24 57.791 2964300 0 0 0 778190 0 2186100 0 0 + 8913 808 7622 54083;54084 34366 34366 471 1 TAGYSSEVIK Unmodified 1053.5342 0.53424004 1277 Karp_01109 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.647 34.04 2 0.010096 8807 20181213_JW_Orientia_Karp_3_2 93.178 48.783 191230000 53363000 47688000 57076000 16158000 0 0 12407000 4538800 8914 1277 7623 54085;54086;54087;54088;54089;54090;54091 34367;34368;34369;34370 34370 4 TAIAIDIILNQK Unmodified 1311.7762 0.77620165 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 66.269 66.471 2 2.8185E-08 26026 20181213_JW_Orientia_Karp_2_2 194.12 132.34 52803000 12945000 6507900 6039000 0 6961800 7390100 1168300 11791000 8915 1380 7624 54092;54093;54094;54095;54096;54097;54098 34371;34372;34373;34374;34375;34376;34377 34374 7 TALDIYK Unmodified 822.44872 0.4487195 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 41.498 41.732 2 0.032154 13868 20181213_JW_Orientia_Karp_1_2 87.754 13.78 50484000 0 33145000 15066000 0 2272100 0 0 0 8916 1374 7625 54099;54100;54101 34378 34378 1 TALIHDGLAR Unmodified 1065.5931 0.59309232 1627 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 34.058 34.233 3 0.029554 10455 20181213_JW_Orientia_Karp_1_1 57.149 19.337 246670000 164060000 0 31716000 0 45037000 5854700 0 0 8917 1627 7626 54102;54103;54104;54105 34379 34379 1 TALINSTGEEVAMR Unmodified 1490.7399 0.73989249 1543;1544;1851 P02545;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.118 47.491 2 1.6566E-17 17404 20181213_JW_Orientia_Karp_1_1 215.77 162.29 135230000 38619000 44338000 31290000 5407800 0 8377300 1942400 5253600 8918 1543;1544;1851 7627 54106;54107;54108;54109;54110;54111;54112 34380;34381;34382;34383;34384;34385;34386 34380 7 TALINSTGEEVAMR Deamidation (NQ) 1491.7239 0.72390808 1543;1544;1851 P02545;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 51.538 51.9 2 0.03041 20375 20181213_JW_Orientia_Karp_1_1 88.163 34.911 38617000 11620000 13778000 8905000 0 0 0 3348300 965450 8919 1543;1544;1851 7627 54113;54114;54115;54116;54117 34387 34387 1030 1 TALINSTGEEVAMR Oxidation (M) 1506.7348 0.73480712 1543;1544;1851 P02545;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 41.571 41.884 2 3.8304E-15 13322 20181213_JW_Orientia_Karp_3_1 216.91 160.48 0 0 0 0 0 0 0 0 0 8920 1543;1544;1851 7627 54118;54119;54120;54121 34388;34389;34390;34391 34391 1149 4 TALINSTGEEVAMR Oxidation (M);Deamidation (NQ) 1507.7188 0.7188227 1543;1544;1851 P02545;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;B4DFR3;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 1 1 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 45.957 46.217 2 0.034241 15458 20181213_JW_Orientia_Karp_2_1 82.489 46.779 75475000 23618000 0 30995000 5135000 5623800 4596600 0 5506500 8921 1543;1544;1851 7627 54122;54123;54124;54125;54126;54127 34392 34392 1030 1149 1 TALLDAAGVASLLTTAEVVVTEIPK Unmodified 2481.3942 0.39417132 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By matching 1 1 80.503 80.452 2 2.7353E-36 37755 20181213_JW_Orientia_Karp_1_1 210.91 167.05 3790900 2715500 0 1075400 0 0 0 0 0 8922 81 7628 54128;54129 34393;34394 34393 2 TALPAQSAATLPAR Unmodified 1366.7569 0.75686319 506 D6W5C0;B2ZZ89;Q01082;K9MS24;B4DIF8 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.218 44.539 2 0.013761 15455 20181213_JW_Orientia_Karp_1_2 95.094 60.373 101110000 31805000 30897000 23798000 842460 1625700 5783800 5172500 1182400 8923 506 7629 54130;54131;54132;54133;54134;54135;54136;54137 34395 34395 1 TALQDAFSVASLVIATSAMITDHEEDNNTGNR Oxidation (M) 3406.5947 0.59469141 1296 Karp_01187 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 76.9 76.901 4 7.7807E-11 36132 20181213_JW_Orientia_Karp_1_1 126.86 79.147 399250000 92220000 154240000 23640000 43754000 45311000 29159000 0 10919000 8924 1296 7630 54138;54139;54140;54141;54142;54143;54144 34396;34397;34398;34399;34400;34401 34396 853 6 TALQDAFSVASLVIATSAMITDHEEDNNTGNR Oxidation (M);Deamidation (NQ) 3407.5787 0.57870699 1296 Karp_01187 yes yes 0 1 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 4 4 4 1 77.416 77.396 3;4 9.6331E-07 29150 20181213_JW_Orientia_Karp_3_1 100.79 66.57 698060000 117920000 57558000 39056000 45961000 98138000 93223000 236510000 9695400 8925 1296 7630 54145;54146;54147;54148;54149;54150;54151;54152;54153;54154;54155;54156;54157;54158;54159;54160;54161;54162;54163;54164;54165;54166;54167 34402;34403;34404;34405;34406;34407;34408;34409 34409 720;721 853 8 TALQDAFSVASLVIATSAMITDHEEDNNTGNR Unmodified 3390.5998 0.59977678 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 1 2 2 2 2 2 77.947 77.904 3;4 2.5826E-06 36971 20181213_JW_Orientia_Karp_1_2 94.767 73.557 273110000 96085000 22777000 25240000 21159000 27679000 23580000 56593000 0 8926 1296 7630 54168;54169;54170;54171;54172;54173;54174;54175;54176;54177;54178;54179;54180 34410;34411;34412;34413;34414;34415 34411 6 TALQDAFSVASLVIATSAMITDHEEDNNTGNR Oxidation (M);2 Deamidation (NQ) 3408.5627 0.56272257 1296 Karp_01187 yes yes 0 2 1 0 By MS/MS By matching By matching 1 1 1 77.974 77.972 3 0.012946 36700 20181213_JW_Orientia_Karp_1_3 48.18 30.797 31791000 0 0 4429000 21478000 5883600 0 0 0 8927 1296 7630 54181;54182;54183 34416;34417 34417 720;721 853 2 TALTCEACTGK Unmodified 1210.5322 0.5322079 1073 Karp_00049 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 27.6 27.911 2 0.00040287 7027 20181213_JW_Orientia_Karp_1_2 145.46 100.44 17175000 3646800 1928400 8564000 0 1259100 0 1776300 0 8928 1073 7631 54184;54185;54186;54187;54188 34418;34419;34420;34421 34418 4 TAMSTPHVAEPAENEQDEQDENGAEASADLR Oxidation (M);2 Deamidation (NQ) 3329.375 0.37498138 1630 V9HWC0;P26038;B7Z4C7 HEL70;MSN Moesin yes no 0 2 1 0 By MS/MS 3 41.362 41.362 3 3.0735E-40 14061 20181213_JW_Orientia_Karp_1_1 200.3 175.15 34850000 34850000 0 0 0 0 0 0 0 8929 1630 7632 54189;54190;54191 34422;34423;34424 34422 1088;1933;1934 1255 3 TAMSTPHVAEPAENEQDEQDENGAEASADLR Oxidation (M);Deamidation (NQ) 3328.391 0.3909658 1630 V9HWC0;P26038;B7Z4C7 HEL70;MSN Moesin yes no 0 1 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 41.175 41.515 3 6.8761E-25 13147 20181213_JW_Orientia_Karp_3_1 176 149.96 71397000 0 0 27387000 14878000 14542000 3199800 11390000 0 8930 1630 7632 54192;54193;54194;54195;54196 34425;34426;34427;34428;34429;34430;34431 34431 1088;1933;1934 1255 7 TANQIGYPFK Unmodified 1137.5819 0.58185894 1415 Karp_02252 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.028 46.301 2 5.8934E-06 16156 20181213_JW_Orientia_Karp_1_3 169.65 110.87 1229200000 295310000 316330000 285110000 112580000 60595000 68222000 0 91039000 8931 1415 7633 54197;54198;54199;54200;54201;54202;54203;54204 34432;34433;34434;34435;34436;34437;34438;34439 34434 8 TANQIGYPFK Deamidation (NQ) 1138.5659 0.56587452 1415 Karp_02252 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.172 49.473 2 1.0778E-05 18358 20181213_JW_Orientia_Karp_1_2 169.65 111.69 169420000 36978000 38312000 25268000 28612000 14650000 16088000 0 9515600 8932 1415 7633 54205;54206;54207;54208;54209;54210;54211 34440;34441;34442;34443;34444;34445 34440 935;1876 6 TARPFGIQAPGGTSQMER Oxidation (M) 1918.9319 0.93194379 329 A7MD96;Q8N3V7-3;Q8N3V7-2;B3KXB8;Q8N3V7 SYNPO Synaptopodin yes no 0 0 1 1 By MS/MS By matching By matching By matching 1 1 1 1 38.173 38.473 3 0.028417 12623 20181213_JW_Orientia_Karp_1_1 84.895 52.981 28851000 10545000 7346500 6562700 0 0 0 4397400 0 8933 329 7634 54212;54213;54214;54215 34446 34446 1 TASINEYSAR Unmodified 1110.5306 0.53055165 1214 Karp_00878 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 30.443 30.896 2 0.0025289 8815 20181213_JW_Orientia_Karp_1_1 112.71 74.551 22924000 16132000 0 0 2347100 1532000 0 1856600 1055300 8934 1214 7635 54216;54217;54218;54219;54220 34447;34448;34449;34450;34451 34447 5 TASNIIDVSAADSQGMEQHEYMDR 2 Oxidation (M);Deamidation (NQ) 2700.1279 0.12793858 925 H0YFI1;F5H479;F5GX19;F5H3Y3;Q6IAA8 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 0 1 2 0 By MS/MS 1 44.185 44.383 3 0.030746 15187 20181213_JW_Orientia_Karp_1_3 50.916 36.141 2223900 0 0 2223900 0 0 0 0 0 8935 925 7636 54221 34452 34452 323 522;523 1 TASNIIDVSAADSQGMEQHEYMDR 2 Oxidation (M) 2699.1439 0.143923 925 H0YFI1;F5H479;F5GX19;F5H3Y3;Q6IAA8 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 0 0 2 0 By MS/MS 1 43.831 44.482 3 0.0095439 14586 20181213_JW_Orientia_Karp_3_1 76.78 53.979 0 0 0 0 0 0 0 0 0 8936 925 7636 54222 34453 34453 522;523 1 TATEEWGTEDWNEDLSETK Unmodified 2239.9393 0.9393164 666 B4DZJ6;F8W726;B4DYY5;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77;Q5VU79;Q5VU78 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS 1 58.32 58.32 2 3.2171E-23 24615 20181213_JW_Orientia_Karp_1_1 217.2 189.53 0 0 0 0 0 0 0 0 0 8937 666 7637 54223 34454 34454 1 TATESFASDPILYR Unmodified 1569.7675 0.76748745 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;H3BTN5;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 55.642 55.852 2 2.519E-05 20915 20181213_JW_Orientia_Karp_2_3 170.52 83.263 66072000 23831000 21436000 8953200 0 6727600 5124400 0 0 8938 1597 7638 54224;54225;54226;54227;54228 34455;34456 34456 2 TATESFASDPILYRPVAVALDTK Unmodified 2464.285 0.28495522 1597 V9HWB8;P14618;A0A024R5Z9;P14618-3;P14618-2;H3BTN5;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 65.156 65.363 3 1.685E-05 25790 20181213_JW_Orientia_Karp_2_3 127.01 105.74 463820000 88975000 71522000 80584000 15238000 71330000 29216000 106950000 0 8939 1597 7639 54229;54230;54231;54232;54233;54234;54235 34457;34458;34459;34460;34461;34462;34463 34462 7 TATPQQAQEVHEK Unmodified 1465.7161 0.71612058 1715 V9HWK1;Q53HE2;P60174-1;P60174;B4DUI5;P60174-4;U3KPZ0 HEL-S-49;TPI1 Triosephosphate isomerase yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 20.691 21.06 3 0.018805 3370 20181213_JW_Orientia_Karp_2_2 68.463 41.326 5344900 0 1595200 556460 1676900 772180 625600 0 118600 8940 1715 7640 54236;54237;54238;54239;54240;54241 34464 34464 1 TAVDSLVAYSVK Unmodified 1251.6711 0.67106787 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 53.899 54.109 2 1.7814E-05 21511 20181213_JW_Orientia_Karp_1_2 189.58 122.38 121710000 47931000 25817000 35980000 0 4523000 7462600 0 0 8941 224 7641 54242;54243;54244;54245;54246;54247 34465;34466;34467;34468 34466 4 TAVHAGNINFK Acetyl (Protein N-term) 1212.6251 0.62512073 684 G3XAM7;B4E2G8;P35221;P35221-2;E5RIB1;E5RJZ2;E5RIT8;E5RFM3;E5RJL0;E5RIE0;E5RHV7;E5RGY6;E5RG03 CTNNA1 Catenin alpha-1 yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 44.139 44.429 2 0.0037131 15134 20181213_JW_Orientia_Karp_1_3 109.29 73.934 104570000 36177000 33109000 24882000 0 0 2180100 8220100 0 8942 684 7642 54248;54249;54250;54251;54252 34469;34470;34471;34472 34472 4 TAVVVGTITDDVR Unmodified 1344.7249 0.72489436 13 F8VUA6;F8VYV2;B4DDY5;A0A075B7A0;Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020-2;Q07020 RPL18 60S ribosomal protein L18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.829 51.174 2 2.0391E-17 19531 20181213_JW_Orientia_Karp_1_2 251.43 120.78 177140000 44693000 45351000 37186000 12764000 11394000 9774400 13509000 2470900 8943 13 7643 54253;54254;54255;54256;54257;54258;54259;54260 34473;34474;34475;34476;34477 34474 5 TAWQLIK Unmodified 858.49634 0.49633839 1375 Karp_02111 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 48.424 48.725 2 0.01188 16714 20181213_JW_Orientia_Karp_2_1 138.24 42.89 2472900000 742370000 604730000 396360000 394560000 105360000 205750000 0 23806000 8944 1375 7644 54261;54262;54263;54264;54265;54266;54267 34478;34479;34480;34481 34479 4 TAYEIDQR Unmodified 994.47197 0.47197413 1133 Karp_00399 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 31.668 32.026 2 0.01383 8854 20181213_JW_Orientia_Karp_1_3 97.635 44.081 25835000 3783500 8667400 7796300 1239200 996460 895130 1500600 956160 8945 1133 7645 54268;54269;54270;54271;54272;54273;54274;54275 34482;34483;34484;34485 34483 4 TAYQNNITLK Unmodified 1164.6139 0.61388734 1281 Karp_01117 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 37.458 37.78 2 0.025355 11079 20181213_JW_Orientia_Karp_2_1 86.882 32.159 55786000 15663000 13001000 13919000 2209100 1547300 1116000 8331200 0 8946 1281 7646 54276;54277;54278;54279;54280;54281;54282 34486 34486 1 TCAQEGMVLYGWTDHSACSPVCPAGMEYR Oxidation (M) 3348.3767 0.3766586 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 1 0 By MS/MS 1 58.355 58.554 3 7.5303E-05 24143 20181213_JW_Orientia_Karp_1_3 85.182 64.332 7705600 0 0 7705600 0 0 0 0 0 8947 1466;1549 7647 54283 34487 34487 1087 1 TCESLGAGGYR Unmodified 1169.5135 0.51352137 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 31.627 31.943 2 4.6919E-07 9246 20181213_JW_Orientia_Karp_1_1 183.43 112.05 25716000 6001700 8086100 7944100 1465700 369070 491950 0 1357300 8948 195 7648 54284;54285;54286;54287;54288;54289;54290 34488;34489;34490;34491;34492;34493 34488 6 TCGAMGTWSR Oxidation (M) 1141.4645 0.46446269 1455 Karp_02592 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 27.319 27.677 2 0.0026105 6367 20181213_JW_Orientia_Karp_2_1 109.66 67.065 37715000 9335000 5860400 6558500 1685900 1524400 1468600 7577200 3705100 8949 1455 7649 54291;54292;54293;54294;54295;54296;54297;54298 34494;34495;34496;34497;34498;34499 34497 1066 6 TCGLCGNYNGNQGDDFLTPSGLAEPR Deamidation (NQ) 2813.2021 0.20210658 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 1 0 0 By matching By MS/MS 1 1 65.247 65.296 3 0.0011159 28241 20181213_JW_Orientia_Karp_1_3 90.757 55.598 20409000 9468900 0 10940000 0 0 0 0 0 8950 1466;1549 7650 54299;54300 34500 34500 993;1885 1 TCHAHPTLSEVLK Unmodified 1491.7504 0.7503976 1066 Karp_00014 yes yes 0 0 0 0 By matching By MS/MS By matching 1 2 1 32.454 32.692 2;4 0.0075851 9220 20181213_JW_Orientia_Karp_1_2 88.803 37.077 10983000 1475400 8852000 0 0 655430 0 0 0 8951 1066 7651 54301;54302;54303;54304 34501;34502 34501 2 TCLLDALR Unmodified 960.50625 0.50625115 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.54 55.866 2 0.016435 23059 20181213_JW_Orientia_Karp_1_1 93.429 31.466 86250000 41520000 19005000 13119000 5047300 7469600 0 0 89763 8952 1366 7652 54305;54306;54307;54308;54309;54310 34503;34504;34505 34503 3 TCLLIVFSK Unmodified 1079.6049 0.60490256 33 Q5JR08;A0A024R0I3;P08134;E9PQH6;B4DKN9;A0A024R324;P61586;Q5JR07;C9JNR4;C9JX21;Q5JR05;E9PLA2;C9J1T2;C9JRM1;Q5JR06;E9PN11;U3KQA9;U3KQV3;P62745 RHOC;hCG_2043376;RHOA;RHOB Rho-related GTP-binding protein RhoC;Transforming protein RhoA;Rho-related GTP-binding protein RhoB yes no 0 0 0 0 By MS/MS By matching By MS/MS 2 1 1 62.955 63.308 2 0.0061748 23687 20181213_JW_Orientia_Karp_3_2 101.65 56.565 7450800 0 2884300 3801600 0 0 0 0 764990 8953 33 7653 54311;54312;54313;54314 34506;34507 34507 2 TCNCETEDYGEK Unmodified 1504.5446 0.54462308 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5;Q5RI18 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS 1 24.113 24.113 2 0.018451 5757 20181213_JW_Orientia_Karp_1_1 101.35 67.94 0 0 0 0 0 0 0 0 0 8954 595 7654 54315 34508 34508 1 TCQDINECETTNECR Unmodified 1928.7299 0.72987445 407 B4DWH0;Q53TA7;B3KS53;Q59G97;B2R6M6;A8KAJ3;Q12805-5;Q12805-2;Q12805-4;Q12805-3;Q12805 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1 yes no 0 0 0 0 By MS/MS 1 28.722 29.374 2 0.00031513 7294 20181213_JW_Orientia_Karp_3_1 164.53 133.18 0 0 0 0 0 0 0 0 0 8955 407 7655 54316 34509 34509 1 TCQSLHINEMCQER Oxidation (M) 1820.7604 0.76038672 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 28.319 28.586 3 0.0095477 7644 20181213_JW_Orientia_Karp_1_1 94.717 74.328 65568000 10567000 8038900 38993000 1405800 5200000 1363200 0 0 8956 1466;1549 7656 54317;54318;54319;54320;54321;54322 34510;34511;34512 34510 1088 3 TCQSLHINEMCQER Unmodified 1804.7655 0.76547209 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 34.681 34.981 3 0.00017294 10296 20181213_JW_Orientia_Karp_1_2 146.77 103.17 40972000 12983000 12001000 12492000 0 0 0 3495000 0 8957 1466;1549 7656 54323;54324;54325;54326 34513;34514;34515 34514 3 TCVADESAENCDK Unmodified 1497.5712 0.57117219 620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;Q8IUK7;H7C013 ALB Serum albumin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 24.499 24.883 2 1.6994E-05 5354 20181213_JW_Orientia_Karp_2_1 177.04 145.2 29255000 19084000 907720 0 4975300 0 848740 2396600 1042500 + 8958 620 7657 54327;54328;54329;54330;54331;54332;54333 34516;34517;34518;34519;34520;34521 34518 6 TCVADESHAGCEK Unmodified 1462.5817 0.58167729 792 CON__P02769 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 19.389 19.656 3 0.028744 3664 20181213_JW_Orientia_Karp_3_1 57.804 27.468 13399000 1224700 0 2103500 3209400 665210 2345200 3850700 0 + 8959 792 7658 54334;54335;54336;54337;54338;54339 34522;34523 34523 2 TDAAVSFAK Acetyl (Protein N-term) 950.47091 0.4709115 1557 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 1 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 54.189 54.455 2 0.0011347 21518 20181213_JW_Orientia_Karp_1_3 128.36 47.065 56776000 16885000 2422400 30474000 1521600 1790400 3682600 0 0 8960 1557 7659 54340;54341;54342;54343;54344;54345;54346 34524;34525 34525 2 TDAGTILHTGDWK Unmodified 1413.6888 0.6888432 1320 Karp_01282 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 45.487 45.754 2;3 0.00027381 15135 20181213_JW_Orientia_Karp_3_1 161.19 94.622 745950000 165170000 292500000 228250000 20560000 23136000 9288500 7043900 0 8961 1320 7660 54347;54348;54349;54350;54351;54352;54353;54354;54355;54356;54357;54358;54359 34526;34527;34528;34529;34530;34531;34532;34533 34533 8 TDDEVVQR Unmodified 960.45124 0.45123869 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;Q96GW1;B4DQX3;F8VPC7 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 24.644 25.046 2 0.00077391 5416 20181213_JW_Orientia_Karp_2_1 186.09 98.335 100930000 29587000 0 0 11035000 13386000 11248000 21845000 13827000 8962 1598 7661 54360;54361;54362;54363;54364;54365 34534;34535;34536;34537;34538;34539;34540;34541 34534 8 TDDEVVQREEEAIQLDGLNASQIR Unmodified 2727.3311 0.33113014 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;Q96GW1;B4DQX3 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 1 By matching By MS/MS 1 1 60.71 60.885 3 1.4034E-05 25877 20181213_JW_Orientia_Karp_1_2 123.55 82.933 83226000 46748000 36478000 0 0 0 0 0 0 8963 1598 7662 54366;54367 34542 34542 1 TDDSNPQTTVHEQNDTINLANQTIEEYK Deamidation (NQ) 3218.4487 0.44873867 1400 Karp_02191 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 4 2 3 3 1 54.303 54.634 3 2.1656E-33 21073 20181213_JW_Orientia_Karp_2_1 195.94 169.15 963330000 222500000 250800000 216100000 145970000 27679000 80285000 19988000 0 8964 1400 7663 54368;54369;54370;54371;54372;54373;54374;54375;54376;54377;54378;54379;54380;54381;54382;54383;54384;54385;54386;54387;54388;54389 34543;34544;34545;34546;34547;34548;34549;34550;34551;34552;34553;34554;34555;34556;34557;34558;34559 34551 911;912;1869;1870;1871 17 TDDSNPQTTVHEQNDTINLANQTIEEYK Unmodified 3217.4647 0.46472309 1400 Karp_02191 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 1 54.153 54.462 3 1.9271E-44 21319 20181213_JW_Orientia_Karp_1_2 220.5 180.01 1515200000 277050000 337470000 386210000 202560000 122020000 142010000 47927000 0 8965 1400 7663 54390;54391;54392;54393;54394;54395;54396;54397;54398;54399;54400 34560;34561;34562;34563;34564;34565;34566;34567;34568;34569 34562 10 TDDYLDQPCYETINR Unmodified 1901.8102 0.8101569 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q5SX87;Q5SX91 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 52.377 52.61 2 5.6321E-13 20488 20181213_JW_Orientia_Karp_1_2 231.83 177.36 27978000 0 8033600 15041000 0 4903100 0 0 0 8966 596 7664 54401;54402;54403;54404;54405 34570;34571;34572;34573 34571 4 TDEFQLHTNVNDGTEFGGSIYQK Unmodified 2599.1827 0.18267499 1616 P21796;B3KTS5;B4DEI3 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 54.622 54.944 3 0.00015618 22433 20181213_JW_Orientia_Karp_1_1 111.11 67.995 55767000 18758000 0 28871000 4009700 3668300 0 0 459810 8967 1616 7665 54406;54407;54408;54409;54410 34574 34574 1 TDEQALLSSILAK Unmodified 1387.7559 0.75586013 925 H0YFI1;F5H479;F5GX19;F5H3Y3;Q6IAA8 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 67.591 67.767 2 0.0023751 29896 20181213_JW_Orientia_Karp_1_3 122.42 78.124 24169000 7281900 4556900 4447100 0 3836100 1549500 0 2497000 8968 925 7666 54411;54412;54413;54414;54415;54416;54417 34575;34576;34577;34578 34576 3 TDFFIGGEEGMAEK Oxidation (M) 1545.6657 0.6657245 2008 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 1 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 52.441 52.803 2 0.023809 21023 20181213_JW_Orientia_Karp_1_1 79.23 53.793 27674000 10131000 9433700 5395200 0 0 0 2166700 547260 8969 2008 7667 54418;54419;54420;54421;54422 34579;34580 34579 1533 2 TDGFAEAIHSPQVAGVPR Unmodified 1850.9275 0.92751034 1589 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 50.058 50.36 3 0.018848 17874 20181213_JW_Orientia_Karp_2_3 62.237 38.245 32062000 3663000 3813900 5980000 5695900 8169100 4170900 0 569470 8970 1589 7668 54423;54424;54425;54426;54427;54428;54429 34581;34582;34583 34583 3 TDGFGIDTCR Unmodified 1140.487 0.48697227 1552 P04632;K7ELJ7;K7EM73;K7EIV0;A0A075B7C0;U3KQE2;K7EKD8;U3KPR7 CAPNS1 Calpain small subunit 1 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 43.366 43.683 2 0.0010674 14221 20181213_JW_Orientia_Karp_3_1 122.96 62.134 82006000 10990000 25454000 22965000 7937500 0 2850300 11808000 0 8971 1552 7669 54430;54431;54432;54433;54434;54435 34584;34585 34585 2 TDHPEIGEGKPTPALSEEASSSSIR Unmodified 2594.246 0.24600353 592 B4DS66;B4DKR1;Q16891-2;Q16891;Q05DN3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.023 40.383 4 0.034309 12933 20181213_JW_Orientia_Karp_1_3 45.205 24.58 88558000 26735000 18689000 27901000 2987600 0 0 11669000 575630 8972 592 7670 54436;54437;54438;54439;54440;54441 34586;34587 34587 2 TDISGISIGADK Unmodified 1175.6034 0.60338224 1193 Karp_00798 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.915 49.216 2 3.4859E-08 18156 20181213_JW_Orientia_Karp_1_2 193.83 92.111 352260000 66482000 79649000 63852000 65953000 24141000 33564000 0 18624000 8973 1193 7671 54442;54443;54444;54445;54446;54447;54448 34588;34589;34590;34591;34592;34593;34594 34589 7 TDLASEPFLSK Unmodified 1206.6132 0.61321864 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.638 52.939 2 1.3452E-05 19078 20181213_JW_Orientia_Karp_2_2 172.98 103.35 314580000 92502000 75805000 51556000 36957000 29091000 27573000 0 1093200 8974 1449 7672 54449;54450;54451;54452;54453;54454;54455 34595;34596;34597;34598;34599;34600;34601;34602 34600 8 TDLLLEPYNK Unmodified 1204.634 0.63395408 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 54.133 54.4 2 5.0255E-05 21654 20181213_JW_Orientia_Karp_1_2 155.58 76.096 817510000 205700000 109760000 448990000 13291000 20318000 19450000 0 0 8975 47 7673 54456;54457;54458;54459;54460;54461;54462 34603;34604 34603 2 TDLLNQFTSISSK Deamidation (NQ) 1453.73 0.73003931 1315 Karp_01271 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 58.745 59.087 2 0.011699 24441 20181213_JW_Orientia_Karp_1_3 105.95 65.236 46244000 0 16340000 14562000 4731800 5778300 3852400 979080 0 8976 1315 7674 54463;54464;54465;54466;54467;54468 34605;34606;34607 34606 748 3 TDLLNQFTSISSK Unmodified 1452.746 0.74602373 1315 Karp_01271 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 62.587 62.787 2 3.932E-42 23498 20181213_JW_Orientia_Karp_3_2 263.44 176.55 381360000 114990000 91391000 114520000 0 60460000 0 0 0 8977 1315 7674 54469;54470;54471;54472;54473 34608;34609 34609 2 TDMFQTVDLFEGK Oxidation (M) 1545.7021 0.70211 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9;Q59FA5 TAGLN Transgelin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 62.589 62.805 2 1.8639E-11 24702 20181213_JW_Orientia_Karp_2_1 202 146.28 102180000 26003000 14526000 23611000 3900300 17669000 16466000 0 0 8978 1761 7675 54474;54475;54476;54477;54478;54479 34610;34611;34612;34613;34614;34615;34616;34617 34613 1378 8 TDMFQTVDLFEGK Unmodified 1529.7072 0.70719538 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9;Q59FA5 TAGLN Transgelin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 70.935 71.055 2 1.3966E-17 32460 20181213_JW_Orientia_Karp_1_1 222.2 153.35 116230000 25335000 23860000 15232000 9329400 8419000 6003400 20786000 7265800 8979 1761 7675 54480;54481;54482;54483;54484;54485;54486;54487 34618;34619;34620;34621;34622;34623;34624;34625 34618 8 TDNQMLVK Unmodified 947.47462 0.47461667 1365 Karp_01875 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 31.857 32.177 2 0.015003 9428 20181213_JW_Orientia_Karp_1_1 95.741 35.264 7652900 4406200 2772100 0 0 0 0 0 474600 8980 1365 7676 54488;54489;54490 34626 34626 1 TDNQMLVK Oxidation (M) 963.46953 0.46953129 1365 Karp_01875 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 23.644 24.071 2 0.0034729 5380 20181213_JW_Orientia_Karp_1_2 143.89 42.56 11373000 0 3837600 0 1557800 1459700 855310 2479700 1182400 8981 1365 7676 54491;54492;54493;54494;54495;54496;54497 34627;34628;34629;34630;34631;34632;34633 34628 946 7 TDQVIQSLIALVNDPQPEHPLR Unmodified 2482.318 0.31798668 43 A8K4W8;A0A024R1A4;P68036-2;P68036;P68036-3 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.942 73.011 3 8.1223E-07 29481 20181213_JW_Orientia_Karp_2_2 143.04 96.58 285280000 30936000 69899000 31001000 10001000 30210000 23845000 63341000 26046000 8982 43 7677 54498;54499;54500;54501;54502;54503;54504;54505 34634;34635;34636;34637;34638 34635 5 TDRIEHWLSHGAQPTEK Unmodified 2003.9813 0.98133683 1248 Karp_00920 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 2 1 1 33.975 34.296 3;4 0.00028292 9599 20181213_JW_Orientia_Karp_2_3 122.5 81.489 1257500000 304730000 425740000 335300000 52178000 39810000 17305000 82395000 0 8983 1248 7678 54506;54507;54508;54509;54510;54511;54512;54513;54514;54515;54516;54517;54518;54519 34639;34640;34641;34642;34643;34644;34645;34646;34647;34648;34649;34650 34649 12 TDTGEPMGR Oxidation (M) 978.40766 0.40765932 1057 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 16.898 17.132 2 0.039032 3077 20181213_JW_Orientia_Karp_1_1 69.812 28.363 1407000 1082500 248760 0 0 0 0 75714 0 8984 1057 7679 54520;54521;54522 34651 34651 1 TDTLEDLFPTTK Unmodified 1379.682 0.68202649 1591 Q53T09;P13010 XRCC5 X-ray repair cross-complementing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 64.335 64.517 2 2.4798E-12 27791 20181213_JW_Orientia_Karp_1_3 209.85 115.16 55629000 20100000 11063000 17141000 0 5110300 0 0 2214200 8985 1591 7680 54523;54524;54525;54526;54527 34652;34653;34654;34655 34654 4 TDVDVSLPK Unmodified 972.51278 0.51277632 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.215 45.39 2 0.0060482 15887 20181213_JW_Orientia_Karp_1_2 101.9 35.097 89884000 63735000 26150000 0 0 0 0 0 0 8986 1782 7681 54528;54529;54530 34656;34657;34658 34657 3 TDVHGSLEAIVASINK Unmodified 1652.8733 0.87334951 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS 2 1 1 1 60.177 60.402 3 0.008719 26003 20181213_JW_Orientia_Karp_1_1 95.428 49.565 25464000 6070400 0 16772000 604370 0 2017200 0 0 8987 1366 7682 54531;54532;54533;54534;54535 34659;34660 34659 2 TDYIPLLDVDEK Unmodified 1419.7133 0.71332662 879 E7EVA0;P27816;P27816-2;P27816-6;B4DM10;P27816-5;A0A024R2V2;A0A024R2S1;Q6NX68;Q05D06;H7C456;P27816-7 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 2 68.335 68.566 2 0.0012334 27589 20181213_JW_Orientia_Karp_2_1 131.12 97.155 83869000 14710000 7626000 8321100 8965300 12489000 9600600 14425000 7732000 8988 879 7683 54536;54537;54538;54539;54540;54541;54542;54543;54544;54545 34661;34662;34663;34664;34665;34666;34667 34663 7 TDYNASVSVPDSSGPER Unmodified 1779.7911 0.79113602 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 43.537 43.809 2 1.1002E-53 15332 20181213_JW_Orientia_Karp_1_1 258.39 204.82 195810000 63855000 44400000 77476000 5264200 2671500 1043600 0 1100000 8989 63 7684 54546;54547;54548;54549;54550;54551;54552 34668;34669;34670 34668 3 TEAASDPQHPAASEGAAAAAASPPLLR Unmodified 2556.2568 0.25684299 60 A0A024R1Z6;Q99536;Q99536-3;K7ERT7 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 47.285 47.603 3 0.00048409 15237 20181213_JW_Orientia_Karp_3_2 90.778 61.795 264150000 81544000 102080000 0 16344000 20003000 13241000 0 30939000 8990 60 7685 54553;54554;54555;54556;54557;54558 34671;34672;34673;34674 34674 4 TEAESWYQTK Unmodified 1241.5564 0.55643205 799;679 B4E1T1;B4DL32;H0YIN9;H0YI76;CON__P13647;P13647 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.695 38.011 2 2.2732E-17 12274 20181213_JW_Orientia_Karp_1_1 225.87 158.84 110560000 14435000 17745000 22703000 16199000 12258000 0 27219000 0 + 8991 679;799 7686 54559;54560;54561;54562;54563;54564 34675;34676;34677;34678;34679;34680 34675 6 TEALTTASMK Oxidation (M) 1067.5169 0.51687542 1074 Karp_00050 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.938 25.295 2 1.8787E-08 5869 20181213_JW_Orientia_Karp_1_2 195.57 125.95 352680000 72631000 75556000 54375000 41162000 29754000 17901000 41735000 19563000 8992 1074 7687 54565;54566;54567;54568;54569;54570;54571;54572 34681;34682;34683;34684;34685;34686;34687;34688 34682 595 8 TEALTTASMK Unmodified 1051.522 0.52196079 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 33.258 33.652 2 5.8934E-06 9653 20181213_JW_Orientia_Karp_1_2 169.65 112.37 432670000 120470000 163070000 125480000 11594000 0 0 9552700 2504800 8993 1074 7687 54573;54574;54575;54576;54577;54578;54579 34689;34690;34691;34692;34693;34694;34695 34690 7 TEALYYTDDTAMAR Oxidation (M) 1635.7087 0.70865195 1989 Q9NX46 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 yes yes 0 0 1 0 By MS/MS By MS/MS 1 1 43.65 43.905 2 0.024026 15454 20181213_JW_Orientia_Karp_1_1 79.036 33.063 3545500 3217800 0 0 0 0 0 0 327730 8994 1989 7688 54580;54581 34696;34697 34696 1528 2 TEEAIILYDTAIK Unmodified 1478.7868 0.78682591 1145 Karp_00478 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 61.426 61.728 2 8.5719E-12 26515 20181213_JW_Orientia_Karp_1_2 207.29 151.03 17024000 4373400 4613000 0 0 3094300 3590300 572460 780740 8995 1145 7689 54582;54583;54584;54585;54586;54587;54588 34698;34699;34700;34701;34702;34703;34704 34699 7 TEEGPTLSYGR Unmodified 1208.5673 0.56733108 418 D6REM6;A8MXP9;P43243;D6R991;Q68D11 MATR3;DKFZp686K23100 Matrin-3 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 38.761 38.944 2 0.0004601 12830 20181213_JW_Orientia_Karp_1_1 144.65 64.485 48405000 12096000 25477000 10833000 0 0 0 0 0 8996 418 7690 54589;54590;54591 34705;34706 34705 2 TEELEEESFPER Unmodified 1493.6522 0.65218292 2009 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 By MS/MS 1 44.99 44.99 2 0.016146 16092 20181213_JW_Orientia_Karp_1_1 104.43 32.338 0 0 0 0 0 0 0 0 0 8997 2009 7691 54592 34707 34707 1 TEETATEMLTSELQTQAHVIK Oxidation (M) 2375.1526 0.15262042 1764 Q02952-3;Q02952-2;Q02952 AKAP12 A-kinase anchor protein 12 yes no 0 0 1 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 54.489 54.892 3 0.034531 20392 20181213_JW_Orientia_Karp_2_3 57.366 35.563 32204000 0 9832600 0 4214300 11429000 5723900 0 1004200 8998 1764 7692 54593;54594;54595;54596;54597 34708 34708 1 TEFDQNMLEQQNR Oxidation (M) 1667.7209 0.72094797 1382 Karp_02121 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.818 39.125 2 7.9827E-05 11815 20181213_JW_Orientia_Karp_2_1 164.48 119.5 55089000 10628000 19339000 9151200 5491100 2046600 3611800 4820800 0 8999 1382 7693 54598;54599;54600;54601;54602;54603;54604 34709;34710;34711;34712;34713;34714;34715;34716 34712 982 8 TEFDQNMLEQQNR Unmodified 1651.726 0.72603334 1382 Karp_02121 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 47.149 47.522 2 3.4986E-05 17357 20181213_JW_Orientia_Karp_1_1 173.76 111.99 88658000 28749000 19955000 22729000 4582300 0 4191100 1908200 6542600 9000 1382 7693 54605;54606;54607;54608;54609;54610;54611 34717;34718;34719 34717 3 TEFLSFMNTELAAFTK Oxidation (M) 1864.8917 0.89170169 450 B2R5H0;V9HWH9;P31949 HEL-S-43;S100A11 Protein S100;Protein S100-A11;Protein S100-A11, N-terminally processed yes no 0 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 71.601 71.695 2 4.1914E-49 29227 20181213_JW_Orientia_Karp_2_1 257.2 190.53 248090000 37781000 22573000 28297000 23915000 34453000 32606000 53644000 14823000 9001 450 7694 54612;54613;54614;54615;54616;54617;54618;54619 34720;34721;34722;34723;34724;34725 34721 299 5 TEFLSFMNTELAAFTK Unmodified 1848.8968 0.89678707 450 B2R5H0;V9HWH9;P31949 HEL-S-43;S100A11 Protein S100;Protein S100-A11;Protein S100-A11, N-terminally processed yes no 0 0 0 0 By matching By MS/MS 1 2 75.005 74.972 2;3 0.0079752 30589 20181213_JW_Orientia_Karp_2_3 96.096 58.919 64792000 45783000 0 0 0 0 19009000 0 0 9002 450 7694 54620;54621;54622 34726;34727 34726 1 TEGAEATPGAQK Unmodified 1158.5517 0.55168102 838 D3DUZ3;Q16666-2;Q16666;Q16666-3;H3BM18;X6RHM1 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 0 By matching By MS/MS 1 1 20.433 20.657 2 0.014702 3975 20181213_JW_Orientia_Karp_1_3 90.149 45.8 537840 0 241150 296690 0 0 0 0 0 9003 838 7695 54623;54624 34728 34728 1 TEHINIHQLR Unmodified 1259.6735 0.67346791 627 B4DQ92;E7EVW7;P14317;B4DTP2;P14317-2 HCLS1 Hematopoietic lineage cell-specific protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 27.346 27.647 3 0.027559 5713 20181213_JW_Orientia_Karp_2_2 59.067 21.876 2455000 0 0 0 0 1397700 1057300 0 0 9004 627 7696 54625;54626;54627 34729;34730;34731 34730 3 TEIDKPSQMQVTDVQDNSISVK Oxidation (M) 2477.1955 0.19554786 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.634 42.964 3 1.9124E-22 13320 20181213_JW_Orientia_Karp_3_2 198.05 154.41 400650000 122780000 82088000 48845000 23086000 20629000 0 90056000 13160000 9005 85 7697 54628;54629;54630;54631;54632;54633;54634 34732;34733;34734;34735;34736;34737;34738;34739 34739 98 8 TEIDKPSQMQVTDVQDNSISVK Oxidation (M);Deamidation (NQ) 2478.1796 0.17956345 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 1 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 43.55 43.893 3 6.375E-12 14178 20181213_JW_Orientia_Karp_3_1 170.11 121.79 294230000 77762000 70195000 109260000 7411900 0 7910900 17861000 3825800 9006 85 7697 54635;54636;54637;54638;54639;54640;54641;54642;54643;54644;54645;54646 34740;34741;34742;34743;34744;34745 34744 45;1286 98 6 TEIDKPSQMQVTDVQDNSISVK Unmodified 2461.2006 0.20063324 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.528 47.873 3 1.8748E-12 17542 20181213_JW_Orientia_Karp_1_1 168.3 111.48 430990000 78637000 124600000 142150000 20977000 13735000 17516000 2144200 31240000 9007 85 7697 54647;54648;54649;54650;54651;54652;54653;54654 34746;34747;34748;34749;34750;34751;34752;34753;34754 34746 9 TEIDKPSQMQVTDVQDNSISVK Deamidation (NQ) 2462.1846 0.18464883 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 48.579 48.88 3 3.5154E-06 17810 20181213_JW_Orientia_Karp_1_3 143.47 113.18 235460000 60937000 63045000 75305000 9210300 5157200 7241500 0 14562000 9008 85 7697 54655;54656;54657;54658;54659;54660;54661 34755;34756;34757;34758;34759;34760;34761 34758 45;1286 7 TEIETLIAAK Unmodified 1087.6125 0.61249036 1344 Karp_01520 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.275 51.577 2 4.6297E-06 20200 20181213_JW_Orientia_Karp_1_1 186.76 126.65 95669000 26355000 28721000 14469000 11926000 6033300 7280700 0 883380 9009 1344 7698 54662;54663;54664;54665;54666;54667;54668 34762;34763;34764;34765;34766;34767 34762 6 TEIIILATR Unmodified 1028.623 0.62299547 1623 Q53G83;P23396;P23396-2;F2Z2S8;H0YCJ7;E9PPU1;E9PL09;E9PQ96;E9PJH4;H0YF32;E9PK82;H0YEU2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS 1 55.439 55.638 2 0.027971 22218 20181213_JW_Orientia_Karp_1_3 92.051 51.273 0 0 0 0 0 0 0 0 0 9010 1623 7699 54669 34768 34768 1 TEISDYR Unmodified 882.40831 0.40831125 1400 Karp_02191 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 2 1 2 1 29.75 30.162 2 0.011778 7439 20181213_JW_Orientia_Karp_2_3 130.04 37.573 210990000 70958000 29752000 65353000 11285000 12651000 0 20576000 416750 9011 1400 7700 54670;54671;54672;54673;54674;54675;54676;54677;54678;54679;54680 34769;34770;34771;34772;34773;34774;34775 34774 7 TEKPDTVQLLTVK Unmodified 1470.8294 0.82935943 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5;Q86TJ9;Q6NSG9 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS 1 44.196 44.347 3 0.01316 14291 20181213_JW_Orientia_Karp_2_2 98.253 63.199 0 0 0 0 0 0 0 0 0 9012 1764 7701 54681 34776 34776 1 TELEDTLDSTAAQQELR Unmodified 1918.912 0.91197944 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.25 54.608 2 6.1935E-274 21498 20181213_JW_Orientia_Karp_1_3 421.04 328.18 1414200000 368480000 650630000 289230000 33516000 33550000 32994000 344370 5484900 9013 47 7702 54682;54683;54684;54685;54686;54687;54688;54689 34777;34778;34779;34780;34781;34782;34783;34784 34779 7 TELEDTLDTTAAQQELR Unmodified 1932.9276 0.9276295 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 55.197 55.463 2 1.0129E-83 22715 20181213_JW_Orientia_Karp_1_1 297.91 184.97 116900000 37241000 38583000 27885000 4532400 5924400 2737400 0 0 9014 944 7703 54690;54691;54692;54693;54694;54695 34785;34786;34787 34785 3 TELISVSEVHPSR Unmodified 1452.7573 0.75725712 1669 P42224 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 42.251 42.551 3 0.029229 13596 20181213_JW_Orientia_Karp_3_1 98.105 66.262 87662000 24028000 26500000 28079000 0 0 0 9054700 0 9015 1669 7704 54696;54697;54698;54699 34788;34789;34790 34790 3 TEMEDLMSSK 2 Oxidation (M) 1201.4843 0.48425466 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4;Q2PS10 MYH9;FLJ00279 Myosin-9 yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 23.159 23.492 2 7.447E-07 4938 20181213_JW_Orientia_Karp_3_1 185.81 127.95 76072000 7597500 26249000 10336000 6665700 6019200 3323200 9737700 6144200 9016 47 7705 54700;54701;54702;54703;54704;54705;54706;54707 34791;34792;34793;34794;34795;34796;34797;34798 34797 53;54 8 TEMEDLMSSK Oxidation (M) 1185.4893 0.48934004 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4;Q2PS10 MYH9;FLJ00279 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 32.709 32.999 2 4.7836E-05 9726 20181213_JW_Orientia_Karp_1_1 154.01 115.92 54575000 14498000 15149000 18943000 0 0 1693300 4291700 0 9017 47 7705 54708;54709;54710;54711;54712 34799;34800;34801;34802;34803 34799 53;54 5 TEMEDLMSSK Unmodified 1169.4944 0.49442542 47 A0A024R1N1;P35579;P35579-2;Q6ZNL4;Q2PS10 MYH9;FLJ00279 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.872 45.055 2 0.00026124 15547 20181213_JW_Orientia_Karp_1_3 142.98 108.8 183440000 62632000 63268000 57543000 0 0 0 0 0 9018 47 7705 54713;54714;54715 34804;34805;34806 34806 3 TENIDTANIDSMK Oxidation (M) 1466.6559 0.65588809 1255 Karp_00935 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 36.404 36.777 2 1.0535E-72 11623 20181213_JW_Orientia_Karp_1_1 294.49 194.52 476810000 152030000 117650000 71074000 19433000 45180000 0 67200000 4241000 9019 1255 7706 54716;54717;54718;54719;54720;54721;54722;54723 34807;34808;34809;34810;34811;34812;34813;34814 34807 819 8 TENIDTANIDSMK Unmodified 1450.661 0.66097347 1255 Karp_00935 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 43.371 43.773 2 1.1791E-58 13696 20181213_JW_Orientia_Karp_3_2 281.17 221.24 200890000 0 69987000 84837000 13650000 0 8313100 17975000 6129100 9020 1255 7706 54724;54725;54726;54727;54728;54729;54730 34815;34816;34817;34818;34819;34820;34821 34821 7 TENLLGSYFPK Unmodified 1267.6449 0.64485312 1772 Q6FHU3;Q06323;Q06323-3;Q06323-2 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.341 59.628 2 2.5511E-09 21506 20181213_JW_Orientia_Karp_3_2 202.56 126.46 129380000 54575000 15149000 22612000 6322100 9664200 15745000 0 5318700 9021 1772 7707 54731;54732;54733;54734;54735;54736;54737 34822;34823;34824;34825;34826;34827;34828 34828 7 TENNLDYQLDELIVSSGAK Unmodified 2108.0273 0.027343548 1089 Karp_00229 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.965 69.11 2 4.0608E-07 24643 20181213_JW_Orientia_Karp_3_1 157.91 105.35 40931000 9456700 7588400 8294800 0 4098900 3181900 6724100 1585800 9022 1089 7708 54738;54739;54740;54741;54742;54743;54744 34829;34830;34831;34832;34833;34834 34832 6 TENPLILIDEVDK Unmodified 1497.7926 0.79263957 533 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776-3;P36776-2;P36776 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 69.329 69.509 2 0.0034526 31558 20181213_JW_Orientia_Karp_1_1 141.34 76.065 19704000 0 2716700 4592200 1869000 2887600 1239500 4322100 2076800 9023 533 7709 54745;54746;54747;54748;54749;54750;54751;54752 34835;34836 34835 2 TENSTSAPAAK Unmodified 1075.5146 0.51456723 1565 P07305 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 0 0 0 0 By MS/MS By matching 1 1 16.66 16.884 2 0.015093 2909 20181213_JW_Orientia_Karp_1_2 88.134 47.41 710150 0 308280 401870 0 0 0 0 0 9024 1565 7710 54753;54754 34837 34837 1 TEPIIVTGEVIK Unmodified 1297.7493 0.74931819 1136 Karp_00448 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.79 55.17 2 2.7729E-05 22644 20181213_JW_Orientia_Karp_1_1 172.88 120.3 380770000 95708000 123280000 0 47695000 59543000 49853000 543850 4144700 9025 1136 7711 54755;54756;54757;54758;54759;54760;54761;54762 34838;34839;34840;34841;34842;34843;34844 34838 7 TEPTAQQNLALQLAEK Unmodified 1753.921 0.92102798 5 A0A024QYX7;B3KNZ4;B4DRU0;B4DVU3;B4E2Z6;B4DDN4;B4DVQ5;A1KYQ7;A0A024QYU9;Q99613-2;Q99613;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 52.071 52.433 2 9.7423E-20 20403 20181213_JW_Orientia_Karp_1_2 217.2 142.23 40752000 10246000 8972800 17268000 0 0 0 3977200 288230 9026 5 7712 54763;54764;54765;54766;54767 34845;34846;34847;34848;34849 34847 5 TEQAISFAK Acetyl (Protein N-term) 1035.5237 0.52367535 1023 I7HJJ0;Q6I9V5;P12236 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 1 56.072 56.297 1;2 0.000498 23289 20181213_JW_Orientia_Karp_1_1 123.35 80.272 59491000 10546000 13616000 35330000 0 0 0 0 0 9027 1023 7713 54768;54769;54770;54771;54772 34850;34851;34852;34853 34850 4 TERDQNEKLVQENR 2 Deamidation (NQ) 1759.8337 0.83366954 690 H3BS47;B4E3M8;B7ZKJ9;H3BV03;Q68CZ1-2;Q68CZ1 RPGRIP1L Protein fantom yes no 0 2 0 2 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 52.757 53.199 2 0.038712 19235 20181213_JW_Orientia_Karp_2_1 91.549 24.335 23656000 0 0 0 6518400 7905900 5602600 3254500 374240 9028 690 7714 54773;54774;54775;54776;54777 34854 34854 1583 1 TETCNEQCMLAAVK Oxidation (M) 1669.711 0.71097691 1345 Karp_01521 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 35.293 35.627 2 9.9648E-26 10647 20181213_JW_Orientia_Karp_1_2 237.76 165.66 32382000 8491100 8558500 5345800 1505300 2713400 0 5768000 0 9029 1345 7715 54778;54779;54780;54781;54782;54783;54784 34855;34856;34857;34858;34859;34860;34861 34856 911 7 TETCNEQCMLAAVK Unmodified 1653.7161 0.71606228 1345 Karp_01521 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 44.136 44.521 2 0.0068343 15209 20181213_JW_Orientia_Karp_1_3 103.21 37.587 21514000 0 6932500 11807000 234200 293810 0 1760500 485480 9030 1345 7715 54785;54786;54787;54788;54789;54790 34862 34862 1 TETQMLK Oxidation (M) 865.42152 0.42151847 1219 Karp_00886 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 17.497 17.73 2 0.018612 3375 20181213_JW_Orientia_Karp_1_1 99.375 27.426 16236000 4722000 4228500 4545300 1219800 0 666460 853750 0 9031 1219 7716 54791;54792;54793;54794;54795;54796 34863;34864;34865;34866;34867 34863 781 5 TEVEETAGSVPAEELVEMDAEPQEAEPAK Unmodified 3084.3969 0.39688603 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 63.742 63.825 3 0.002228 25125 20181213_JW_Orientia_Karp_2_3 60.218 38.571 24074000 11862000 0 7606400 0 0 4605600 0 0 9032 1764 7717 54797;54798;54799 34868;34869;34870 34869 3 TEVEETAGSVPAEELVEMDAEPQEAEPAK Oxidation (M) 3100.3918 0.39180065 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 1 0 By MS/MS By MS/MS 1 1 58.595 58.945 3 4.1695E-09 22467 20181213_JW_Orientia_Karp_2_1 124.39 105.59 14984000 0 0 0 6929700 8054500 0 0 0 9033 1764 7717 54800;54801 34871;34872;34873 34872 1381 3 TEVLGLMK Oxidation (M) 905.4892 0.4892041 1449 Karp_02529 yes yes 0 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 40.22 40.636 2 0.030163 12213 20181213_JW_Orientia_Karp_3_2 79.116 34.035 11038000 0 5942600 0 0 930130 0 3886400 279000 9034 1449 7718 54802;54803;54804;54805 34874 34874 1 TEVTGDHIPTPQDLPQR Unmodified 1902.9436 0.94355434 123 A0A024R5U3;H3BMD8;P56211-2;P56211;H3BQ52 ARPP-19;ARPP19 cAMP-regulated phosphoprotein 19 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 46.002 46.203 3 0.0056782 15252 20181213_JW_Orientia_Karp_2_2 108.34 68.312 16092000 0 0 0 0 5800000 10292000 0 0 9035 123 7719 54806;54807 34875;34876 34875 1 TEWETAAPAVAETPDIK Acetyl (Protein N-term) 1869.8996 0.89962384 99 M0QZN2;M0R0F0;Q53G25;A0A024R4Q8;M0R0R2;P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 1 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 71.415 71.493 2 0.0001309 32602 20181213_JW_Orientia_Karp_1_1 179.67 115.03 237060000 84488000 51938000 51231000 9162300 14138000 13343000 12760000 0 9036 99 7720 54808;54809;54810;54811;54812;54813;54814 34877;34878;34879;34880;34881 34877 5 TEWQLNAHR Unmodified 1153.5629 0.56285483 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By matching 1 1 32.274 32.574 3 0.01492 9213 20181213_JW_Orientia_Karp_1_2 72.243 17.132 4886900 0 4727300 0 0 0 159670 0 0 9037 852 7721 54815;54816 34882 34882 1 TFAPEEISAMVLTK Unmodified 1535.7905 0.79053108 1585 V9HWB4;P11021;B4DEF7 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1 1 67.608 67.843 2 0.00035133 29966 20181213_JW_Orientia_Karp_1_3 149.23 97.247 27985000 0 5155700 7270900 0 5600000 2881700 3064400 4012000 9038 1585 7722 54817;54818;54819;54820;54821;54822;54823;54824 34883;34884;34885;34886 34886 4 TFDDPTVK Unmodified 921.44436 0.4443624 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 34.373 34.786 2 0.030623 9917 20181213_JW_Orientia_Karp_3_1 82.279 9.4895 364520000 0 0 207000000 36238000 50222000 0 71063000 0 9039 1074 7723 54825;54826;54827;54828 34887;34888;34889;34890 34890 4 TFDDPTVKK Unmodified 1049.5393 0.53932542 1074 Karp_00050 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 25.996 26.298 2 0.014539 5234 20181213_JW_Orientia_Karp_3_2 112.84 62.715 22372000 3051500 6748600 4405500 2625300 1876800 959260 0 2704500 9040 1074 7724 54829;54830;54831;54832;54833;54834;54835 34891;34892 34892 2 TFDLFHPDR Unmodified 1146.5458 0.54580778 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 51.319 51.593 3 0.0094465 20288 20181213_JW_Orientia_Karp_1_1 80.688 50.434 10914000 7664100 0 0 3249800 0 0 0 0 9041 1251 7725 54836;54837;54838 34893;34894;34895 34893 3 TFDQLTPDESK Unmodified 1279.5932 0.59321148 1805 V9HW95;Q15293 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.218 43.539 2 4.5008E-09 14395 20181213_JW_Orientia_Karp_2_3 196.44 75.569 108830000 22237000 19282000 13046000 15458000 4460600 20388000 11866000 2089300 9042 1805 7726 54839;54840;54841;54842;54843;54844;54845;54846 34896;34897;34898;34899;34900;34901 34899 6 TFDQLTPEESK Unmodified 1293.6089 0.60886155 514 Q6IAW5;B3KQF5;O43852;O43852-3;B3KNG6;A0A024R755;O43852-2;O43852-4;O43852-5;O43852-9;O43852-10;O43852-6;O43852-13;O43852-14;O43852-11;O43852-12;O43852-7;O43852-8 CALU Calumenin yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 42.767 43.127 2 2.1945E-05 13853 20181213_JW_Orientia_Karp_2_1 168.3 100.29 94523000 28012000 25789000 12320000 13573000 0 0 13286000 1543700 9043 514 7727 54847;54848;54849;54850;54851;54852;54853 34902;34903;34904;34905 34902 4 TFDSIVMDPK Oxidation (M) 1167.5482 0.54817555 1594 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 46.044 46.257 2 0.030556 16397 20181213_JW_Orientia_Karp_1_2 90.15 35.734 8885800 3508000 0 0 3205000 1209500 963290 0 0 9044 1594 7728 54854;54855;54856;54857;54858 34906;34907 34906 2 TFETIVK Unmodified 836.46437 0.46436956 1611 P20591;F8W8T1;Q8NAA8 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS 1 41.051 41.051 2 0.03998 13935 20181213_JW_Orientia_Karp_1_1 83.377 0 15865000 15865000 0 0 0 0 0 0 0 9045 1611 7729 54859 34908 34908 1 TFFSFPAVVAPFK Unmodified 1456.7755 0.77547336 1667 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 74.196 74.248 2 0.0052989 34484 20181213_JW_Orientia_Karp_1_2 109.83 68.713 16086000 0 9296100 6190300 0 0 0 0 599300 9046 1667 7730 54860;54861;54862 34909 34909 1 TFGEVVR Unmodified 806.42865 0.42865276 1063 Karp_00007 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 35.855 36.189 2 0.02548 10833 20181213_JW_Orientia_Karp_1_3 95.352 46.592 41602000 15217000 12259000 8654100 790980 1953300 0 2728500 0 9047 1063 7731 54863;54864;54865;54866;54867;54868 34910;34911;34912 34910 3 TFHIFYYLLSGAGEHLK Unmodified 1995.0254 0.025433475 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS 1 64.254 64.504 3 0.0060542 28146 20181213_JW_Orientia_Karp_1_2 99.747 71.198 0 0 0 0 0 0 0 0 0 9048 47 7732 54869 34913 34913 1 TFIAIKPDGVQR Unmodified 1343.7561 0.75613491 1620 Q6FHN3;Q32Q12;P22392;P22392-2;E7ERL0;J3KPD9;P15531;P15531-2;C9K028;E5RHP0 NME2;NME1-NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A yes no 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 43.101 43.401 3 0.032914 13733 20181213_JW_Orientia_Karp_2_2 78.903 60.571 148650000 29448000 44129000 14604000 7217600 37104000 0 16146000 0 9049 1620 7733 54870;54871;54872;54873;54874;54875 34914;34915 34915 2 TFIQEYPEVWTEQLK Unmodified 1909.9462 0.9461801 1134 Karp_00400 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 67.752 67.935 2 0.0014921 29943 20181213_JW_Orientia_Karp_1_3 128.54 69.842 14448000 5890200 0 6698600 0 0 0 1859000 0 9050 1134 7734 54876;54877;54878 34916;34917 34917 2 TFLEFNENEYLK Unmodified 1545.7351 0.73512469 1216 Karp_00883 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 62.928 63.138 2 0.007017 27579 20181213_JW_Orientia_Karp_1_1 96.015 62.786 28752000 11023000 3702500 10214000 1385100 0 2427300 0 0 9051 1216 7735 54879;54880;54881;54882;54883 34918 34918 1 TFNTSTGGLLLPSDTK Unmodified 1650.8465 0.84646606 48 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;P12956-2;F5H1I8;B4E356 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 56.999 57.182 2 0.00082285 23900 20181213_JW_Orientia_Karp_1_1 145.49 73.938 50376000 15582000 17560000 17234000 0 0 0 0 0 9052 48 7736 54884;54885;54886 34919;34920 34919 1 TFQTKANLSQHQRIHSGEK 3 Deamidation (NQ) 2212.0873 0.087258463 74 A0A024R2Z2;Q8TBZ5 ZNF502 Zinc finger protein 502 yes no 0 3 0 2 By MS/MS 1 59.001 59.511 3 0.031786 21498 20181213_JW_Orientia_Karp_3_2 56.039 9.1145 0 0 0 0 0 0 0 0 0 9053 74 7737 54887 34921 34921 31;1275;1276;1277 1 TFSDTTHGSVPSDPLGR Unmodified 1772.8329 0.83294126 196 A0A024RAC0;Q86V48-2;Q86V48-3;Q86V48 LUZP1 Leucine zipper protein 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 43.431 43.721 3 0.040995 14843 20181213_JW_Orientia_Karp_1_3 46.319 21.383 29159000 9755700 11554000 4502900 0 0 1142900 2203400 0 9054 196 7738 54888;54889;54890;54891;54892 34922 34922 1 TFSHELSDFGLESTAGEIPVVAIR Unmodified 2574.2966 0.29658254 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 70.382 70.526 3 0.00013558 28167 20181213_JW_Orientia_Karp_2_2 108.12 69.191 95892000 29124000 0 6166900 7788300 14083000 11490000 17008000 10232000 9055 516 7739 54893;54894;54895;54896;54897;54898;54899 34923;34924;34925;34926;34927;34928;34929 34926 7 TFSLSSLVSQPIINNDILYIANEEVIEAYR 3 Deamidation (NQ) 3413.713 0.71299885 1300 Karp_01233 yes yes 0 3 0 0 By MS/MS By MS/MS 1 1 72.808 72.911 3;4 0.021061 33709 20181213_JW_Orientia_Karp_1_3 41.939 8.1412 1714700000 0 0 1428400000 0 0 0 0 286290000 9056 1300 7740 54900;54901 34930;34931 34930 734;735;736;1836 2 TFSVWYVPEVTGTHK Unmodified 1749.8726 0.87262123 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 59.323 59.506 3 0.008676 24658 20181213_JW_Orientia_Karp_1_3 82.202 55.654 96935000 40706000 16696000 39533000 0 0 0 0 0 9057 1615 7741 54902;54903;54904 34932;34933 34933 2 TFTAWCNSHLR Unmodified 1391.6405 0.64045322 1509;133 O43707;F5GXS2;O43707-3;B4E337;B4DSX0;K7EP19;B3W6H4;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;Q86TX4;G3V2N5;B4DRP5;P35609-2;P35609;B2R8Y4;Q08043;B7Z4V1 ACTN4;MLL-ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 39.573 39.822 3 0.027626 13376 20181213_JW_Orientia_Karp_1_1 60.064 37.052 71433000 38739000 19481000 11647000 1019800 546030 0 0 0 9058 1509;133 7742 54905;54906;54907;54908;54909 34934;34935 34934 2 TFVNITPAEVGVLVGK Unmodified 1642.9294 0.92940782 1567 P07737;I3L3D5 PFN1 Profilin-1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.504 70.62 2 1.6786E-37 28560 20181213_JW_Orientia_Karp_2_3 243.37 189.77 1220700000 271220000 63740000 178460000 0 222070000 137220000 347960000 0 9059 1567 7743 54910;54911;54912;54913;54914;54915 34936;34937;34938;34939;34940 34939 5 TFYGHAADR Unmodified 1036.4726 0.47264284 1238 Karp_00905 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 2 1 1 1 1 22.295 22.616 2 0.0010175 4614 20181213_JW_Orientia_Karp_3_1 131.5 79.249 110940000 18271000 15813000 38220000 12838000 7079900 4814100 9406500 4502600 9060 1238 7744 54916;54917;54918;54919;54920;54921;54922;54923;54924;54925 34941;34942;34943;34944;34945;34946 34945 6 TFYGLHQDFPSVVLVGLGK Unmodified 2076.1044 0.10441208 1639 V9HW38;P28838-2;P28838 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 69.711 69.855 3 0.00049814 31656 20181213_JW_Orientia_Karp_1_2 124.91 89.381 75625000 17702000 6450000 15451000 0 5983800 4281700 17977000 7780000 9061 1639 7745 54926;54927;54928;54929;54930;54931;54932 34947;34948;34949;34950;34951 34948 5 TFYQLGVK Unmodified 954.51747 0.51746776 1193 Karp_00798 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 46.24 46.557 2 0.014957 16352 20181213_JW_Orientia_Karp_1_3 95.815 45.791 84366000 24421000 24359000 21990000 9890600 0 3654100 51531 0 9062 1193 7746 54933;54934;54935;54936;54937;54938 34952;34953;34954 34952 3 TFYSCTTEGR Unmodified 1220.5132 0.51318702 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4;P02751-16 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 32.959 33.281 2 0.00027854 9990 20181213_JW_Orientia_Karp_1_1 142.36 116.3 102790000 25585000 32124000 25304000 7743900 3118700 1339100 7576400 0 9063 85 7747 54939;54940;54941;54942;54943;54944;54945 34955 34955 1 TGAAPIIDVVR Unmodified 1110.6397 0.63970816 895 E9PJD9;Q9BQQ5;E9PLL6;Q6NZ52;P46776;E9PLX7 RPL27A;L27a 60S ribosomal protein L27a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.712 53.019 2 0.001403 20638 20181213_JW_Orientia_Karp_1_3 123.51 83.891 195930000 47138000 65034000 40100000 15918000 10087000 16920000 728560 0 9064 895 7748 54946;54947;54948;54949;54950;54951;54952 34956;34957;34958;34959;34960;34961 34958 6 TGAFDYTAIDEVIDENDK Unmodified 2014.9007 0.90074605 1062 Karp_00006 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.743 70.878 2 6.6692E-42 32237 20181213_JW_Orientia_Karp_1_2 305.51 232.43 53033000 0 13440000 16335000 0 5029300 3488000 8827300 5912800 9065 1062 7749 54953;54954;54955;54956;54957;54958 34962;34963;34964;34965;34966;34967;34968 34962 7 TGAIVDVPVGEELLGR Unmodified 1623.8832 0.88318591 1628 V9HW26;P25705-2;P25705;K7EK77;B4DGW3;K7ERX7;K7EJP1;K7EQH4 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 68.096 68.303 2 0.0083158 30740 20181213_JW_Orientia_Karp_1_1 98 57.984 85329000 18422000 11597000 17342000 4780800 8803400 4945700 13800000 5637700 9066 1628 7750 54959;54960;54961;54962;54963;54964;54965;54966 34969;34970;34971;34972;34973 34969 5 TGAKIIIPESYQVVFKPGK Unmodified 2074.1827 0.1826624 1442 Karp_02417 yes yes 0 0 0 2 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 52.607 53.009 3 0.028844 18439 20181213_JW_Orientia_Karp_3_1 75.608 57.783 26321000 4318500 0 9539900 7006400 0 0 3837400 1619100 9067 1442 7751 54967;54968;54969;54970;54971 34974;34975 34974 0 TGALLLQGFIQDR Unmodified 1430.7882 0.78816332 1775 Q07812-5;Q07812-7;Q07812-8;Q07812;Q07812-2 BAX Apoptosis regulator BAX yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.419 67.596 2 2.6533E-17 26239 20181213_JW_Orientia_Karp_3_2 218.94 143.29 41600000 14374000 6916600 6349800 0 4123600 2743700 0 7092600 9068 1775 7752 54972;54973;54974;54975;54976;54977 34976;34977;34978;34979;34980;34981 34981 6 TGAPQYGSYGTAPVNLNIK Unmodified 1949.9847 0.98469087 1872 Q6UN15-4;Q6UN15-3;Q6UN15-5;Q6UN15 FIP1L1 Pre-mRNA 3'-end-processing factor FIP1 yes no 0 0 0 0 By MS/MS By matching 1 1 54.793 54.968 2 0.00091989 22535 20181213_JW_Orientia_Karp_1_1 113.53 47.686 6326900 1970700 4356200 0 0 0 0 0 0 9069 1872 7753 54978;54979 34982 34982 1 TGDFQLHTNVNDGTEFGGSIYQK Unmodified 2527.1615 0.16154562 21 A0A024QZT0;A0A024QZN9;P45880-2;P45880;P45880-1;B4DKM5 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 52.843 53.195 3 0.00024865 20717 20181213_JW_Orientia_Karp_1_3 106.02 78.406 30303000 0 0 16098000 4006200 6615400 3309900 0 272600 9070 21 7754 54980;54981;54982;54983;54984 34983 34983 1 TGDILVGK Unmodified 801.45962 0.45961853 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 36.524 36.845 2 0.0047891 10594 20181213_JW_Orientia_Karp_2_1 125.81 67.218 91346000 45450000 21041000 10976000 3342200 4063000 2878400 3596100 0 9071 1170 7755 54985;54986;54987;54988;54989;54990;54991;54992 34984;34985;34986;34987;34988;34989;34990 34986 7 TGDPIIALDDTK Unmodified 1257.6452 0.64524705 1205 Karp_00841 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 52.931 53.322 2 0.0021867 19513 20181213_JW_Orientia_Karp_2_3 119.45 79.404 21921000 0 8035500 6672800 3710800 0 3388300 0 113500 9072 1205 7756 54993;54994;54995;54996;54997;54998 34991;34992;34993 34993 3 TGDQVQVITGK Unmodified 1144.6088 0.60880197 1231 Karp_00898 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 36.662 36.992 2 1.1708E-07 11817 20181213_JW_Orientia_Karp_1_1 192.44 109.69 78403000 26540000 19160000 16990000 0 4379000 2496800 7139300 1698500 9073 1231 7757 54999;55000;55001;55002;55003;55004;55005 34994;34995;34996;34997;34998;34999 34994 6 TGEAIVDAALSALR Unmodified 1385.7514 0.75144346 1802 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 71.887 71.965 2 4.7949E-25 32899 20181213_JW_Orientia_Karp_1_2 227.81 117.27 296750000 55620000 132300000 36503000 2473400 15498000 6890100 47464000 0 9074 1802 7758 55006;55007;55008;55009;55010;55011;55012 35000;35001;35002;35003;35004;35005 35001 6 TGEPFDSNIHHVLSLVK Unmodified 1891.9792 0.97921156 1144 Karp_00459 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 54.768 55.038 3 0.022023 21745 20181213_JW_Orientia_Karp_1_3 98.508 52.352 1185200000 231040000 373890000 389050000 68360000 122890000 0 0 0 9075 1144 7759 55013;55014;55015;55016;55017 35006;35007 35007 2 TGEQVVQEIYTVTK Unmodified 1593.825 0.82500233 1079 Karp_01488;Karp_02270;Karp_02061;Karp_01254;Karp_00697;Karp_00099 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 56.653 56.969 2 8.0096E-19 21225 20181213_JW_Orientia_Karp_2_2 225.33 143.07 79337000 23983000 21669000 14808000 3461300 8773700 5501200 0 1140700 9076 1079 7760 55018;55019;55020;55021;55022;55023;55024;55025 35008;35009;35010;35011;35012;35013;35014;35015;35016 35015 8 TGFQAVTGK Unmodified 907.47633 0.47633123 696 Q96I16;Q6IBR8;B5BU01;P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 32.727 33.001 2 0.026053 9351 20181213_JW_Orientia_Karp_1_2 93.096 45.909 0 0 0 0 0 0 0 0 0 9077 696 7761 55026;55027 35017;35018 35017 2 TGIPYNSQGQAIVER Acetyl (Protein N-term);3 Deamidation (NQ) 1676.7893 0.78934511 2061 S5GGI0;S5G4A2;S5G498;S5G494 pol yes no 1 3 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 73.695 73.727 2 0.0029321 34068 20181213_JW_Orientia_Karp_1_2 102.95 37.26 506610000 122250000 103830000 115350000 9572800 40827000 20401000 59404000 34977000 9078 2061 7762 55028;55029;55030;55031;55032;55033;55034;55035 35019;35020;35021;35022;35023;35024;35025 35020 1252;2124;2125 7 TGISDVFAK Unmodified 936.49165 0.49164694 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338 NCL Nucleolin yes no 0 0 0 0 By MS/MS 1 49.278 49.529 2 0.021052 17477 20181213_JW_Orientia_Karp_2_3 99.136 44.024 0 0 0 0 0 0 0 0 0 9079 88 7763 55036 35026 35026 1 TGIYEEK Unmodified 838.40725 0.40724861 1637 P27824;P27824-2;P27824-3;Q16094;D6RGY2;Q6ZP56;D6RFL1;H0Y9H1 CANX Calnexin yes no 0 0 0 0 By MS/MS By matching 1 1 25.885 26.01 2 0.022664 6678 20181213_JW_Orientia_Karp_1_1 98.997 13.637 13920000 4854500 9065400 0 0 0 0 0 0 9080 1637 7764 55037;55038 35027 35027 1 TGKHAGNPVYK Acetyl (Protein N-term) 1212.6251 0.62512073 23 A0A024QZR4 ESM1 yes yes 1 0 0 1 By MS/MS 1 39.793 40.044 2 0.0022928 12422 20181213_JW_Orientia_Karp_2_3 126.24 58.749 5482500 0 0 0 0 0 5482500 0 0 9081 23 7765 55039 35028 35028 1 TGLDSPTGIDFSDITANSFTVHWIAPR Unmodified 2917.4246 0.4246366 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 73.629 73.672 3 0.00051227 34160 20181213_JW_Orientia_Karp_1_2 74.308 41.324 149850000 39049000 37023000 54497000 0 2715100 0 8826900 7741400 9082 85 7766 55040;55041;55042;55043;55044;55045 35029 35029 1 TGPGFIEQLR Unmodified 1116.5928 0.59275797 1268 Karp_01076 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.821 51.166 2 0.00033962 19434 20181213_JW_Orientia_Karp_1_3 140.17 30.691 439120000 83152000 123380000 75685000 47322000 19096000 33561000 52917000 4005400 9083 1268 7767 55046;55047;55048;55049;55050;55051;55052;55053 35030;35031;35032 35032 3 TGPNLPR Unmodified 753.41334 0.41333704 1236 Karp_00903 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 29.422 29.765 2 0.011997 7703 20181213_JW_Orientia_Karp_1_3 124.59 51.805 333320000 93238000 108190000 77482000 25139000 24020000 0 0 5255900 9084 1236 7768 55054;55055;55056;55057;55058;55059 35033;35034;35035;35036;35037 35034 5 TGQAPGYSYTAANK Unmodified 1427.6681 0.66810776 772 C9JFR7;G4XXL9;P99999 CYCS Cytochrome c yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 31.99 32.3 2 0.0046234 8310 20181213_JW_Orientia_Karp_2_1 111.31 77.447 9456200 2465900 0 2607900 1373600 908190 1207800 0 892940 9085 772 7769 55060;55061;55062;55063;55064;55065 35038;35039 35039 2 TGQEYKPGNPPAEIGQNISSNSSASILESK Unmodified 3102.5106 0.51055107 1568 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 50.814 51.114 3 1.0726E-07 19512 20181213_JW_Orientia_Karp_1_3 117.62 74.012 28147000 8029500 10225000 5893100 0 0 0 3999500 0 9086 1568 7770 55066;55067;55068;55069 35040;35041;35042;35043;35044;35045 35043 6 TGSPGSPGAGGVQSTAK Unmodified 1457.711 0.71103521 142 J3KRI4;A0A024R6Z0;O43237-2;O43237;J3KRZ2 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 0 0 0 0 By matching By MS/MS 1 1 25.829 25.878 2 0.038888 6163 20181213_JW_Orientia_Karp_1_3 70.54 25.56 991940 462580 0 529360 0 0 0 0 0 9087 142 7771 55070;55071 35046 35046 1 TGVELGKPTHFTVNAK Unmodified 1697.9101 0.91006937 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 36.777 37.067 4 0.038909 10902 20181213_JW_Orientia_Karp_3_1 79.804 59.794 104650000 58602000 25434000 15238000 0 0 1963600 3412600 0 9088 1615 7772 55072;55073;55074;55075;55076 35047;35048 35048 2 TGWLTILDAAIDR Unmodified 1443.7722 0.7721789 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 75.013 75.032 2 4.3955E-17 27972 20181213_JW_Orientia_Karp_3_1 246.08 155.37 566160000 223420000 76359000 102490000 12001000 45646000 41058000 63716000 1472200 9089 1126 7773 55077;55078;55079;55080;55081;55082;55083;55084 35049;35050;35051;35052;35053;35054;35055 35054 7 TGYTLDVTTGQR Unmodified 1310.6466 0.64664404 475;469 Q05CK9;B2R8Z8;O60506-4;O60506-3;O60506-2;O60506;Q59GL1;B7Z645;F6UXX1;Q0VGD6;B2R7W4;O43390;Q6MZS5;O43390-4;O43390-2;B4DMD1 SYNCRIP;HNRPR;HNRNPR;DKFZp686A13234 Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 43.967 44.227 2 2.2819E-16 15031 20181213_JW_Orientia_Karp_1_3 211.64 148.22 125890000 30905000 45307000 41787000 0 0 6603200 0 1286600 9090 475;469 7774 55085;55086;55087;55088;55089;55090 35056;35057;35058;35059 35056 4 THAAGTPSEPSATVTIEELDPPPAPTLTVDR Unmodified 3169.5779 0.57790235 810 CON__Q2KJF1 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 61.866 62.066 3 0.0010108 26769 20181213_JW_Orientia_Karp_1_2 64.423 38.619 32151000 8956900 5002900 9655600 0 8535500 0 0 0 + 9091 810 7775 55091;55092;55093;55094 35060;35061;35062;35063 35061 4 THANLSQSLDDDDLPF Unmodified 1786.801 0.80097243 1302 Karp_01239 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 63.801 64.033 2 9.1915E-08 24254 20181213_JW_Orientia_Karp_3_2 179.67 134.81 1331400000 381410000 245890000 344430000 27189000 162230000 96042000 891100 73273000 9092 1302 7776 55095;55096;55097;55098;55099;55100;55101;55102 35064;35065;35066;35067;35068;35069;35070;35071 35071 8 THEAEIVEGENHTYCIR Unmodified 2056.9273 0.92725235 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91;H0Y5C6 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 35.744 36.044 3 0.0054095 10749 20181213_JW_Orientia_Karp_1_3 110.6 93.982 58494000 15147000 17189000 22567000 0 0 0 3590200 0 9093 1615 7777 55103;55104;55105;55106 35072;35073;35074 35074 3 THEAQIQEMR Oxidation (M) 1257.5772 0.57718426 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 1 18.001 18.286 2;3 0.0011576 3530 20181213_JW_Orientia_Karp_1_1 118.4 94.975 82311000 40046000 20497000 13662000 3049800 705460 1412700 2536400 402440 9094 47 7778 55107;55108;55109;55110;55111;55112;55113;55114;55115;55116;55117;55118;55119 35075;35076;35077;35078;35079;35080;35081;35082;35083 35075 55 9 THEAQIQEMR Unmodified 1241.5823 0.58226964 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 23.999 24.332 2;3 0.0003226 5415 20181213_JW_Orientia_Karp_1_3 148.56 96.154 60207000 5193700 39588000 4611900 2064400 1798900 855660 4684900 1410200 9095 47 7778 55120;55121;55122;55123;55124;55125;55126;55127;55128;55129;55130;55131;55132;55133;55134;55135 35084;35085;35086;35087 35085 4 THINIVVIGHVDSGK Unmodified 1587.8733 0.87328993 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q53GA1;Q9H2I7;Q05639;A6PW80;Q5JR01;Q6NS35;Q6NSH7 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 41.435 41.61 3 0.0016845 13770 20181213_JW_Orientia_Karp_1_2 109.48 88.769 169870000 52850000 69697000 41471000 0 5848700 0 0 0 9096 1746 7779 55136;55137;55138;55139 35088;35089;35090;35091 35089 4 THIQDNHDGTYTVAYVPDVTGR Unmodified 2458.1513 0.15131528 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 46.179 46.521 3 0.039733 16221 20181213_JW_Orientia_Karp_1_3 37.713 14.384 75281000 15952000 24784000 28715000 0 0 0 1497800 4332200 9097 1615 7780 55140;55141;55142;55143;55144 35092 35092 1 THLPGFVEQAEALK Unmodified 1538.8093 0.80929269 1645 V9HW35;P30044-2;P30044 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.399 50.649 3 0.0036922 19034 20181213_JW_Orientia_Karp_1_3 169.58 102.92 129630000 19421000 24116000 10348000 57091000 18655000 0 0 0 9098 1645 7781 55145;55146;55147;55148;55149 35093;35094 35094 2 THMTHHAVSDHEATLR Oxidation (M) 1857.854 0.85402782 267;709;857;1906;2066;861 A0A060CZ20;I7EQF7;A7MAE1;X5CHJ2;X2J3V4;W8YM39;W8E988;W6SQV0;W6SNC0;W0T236;W0FF27;V9VYY9;U6EV21;U5XMI1;U4QB70;T2MJ84;T1WQ06;T1RT90;S5NIY1;S0F3H7;S0F0M8;R9WAS6;R9RVK4;Q8MHP8;Q8MHP7;Q75WB6;Q75NJ3;Q6L6R5;Q6F3I9;Q68Y63;Q60I39;Q5W9R8;Q5R1M0;Q5EPE9;Q546Q4;Q546F7;Q540M3;Q4VYE6;Q4LAU0;Q308P3;N1NSY8;N0GWB7;N0AAA5;M5AUI8;M4VSA0;M4VMS8;M4VLP5;M4QNU4;M1KQ42;L7XDT5;L7XDE9;L7WM55;I7HAR2;I6Z8E6;I6QTM5;I2GUK0;I2GUJ9;I2G8B5;I1VXM3;I1VXL9;H9BE43;H9BB16;G9IHU5;G8GBV1;G8GBV0;G8FQ52;G0M6G2;F5BZ30;F5ATC5;F4ZZU3;E9ABI2;E5BBI6;E3UM70;E3Q1V2;E2GD50;E0WMV7;E0WMV2;D7GLM1;D5L6G2;D5H3I6;D3YLL2;D2KZ31;D2KZ29;D2KZ27;D1H0T8;C6L835;B9W1S7;B6ECH5;B5A516;B3V990;B0LV24;A7WPI9;A7LKN0;A6N9E1;A5A4L6;A4UUL3;A0A061CVW2;I2GAD7;F0VRV9;D5H3V7;D5H3U0;D5H3T3;Q8WLS4;A5I8L1;U5YMN5;U5YMN1;U5YMG9;U5YMG4;U5YMF9;U5YKE8;U5YKE0;U5YJM1;U5YJI7;U5YJI3;U5YJG6;H2DDR7;F6IQV5;F6IQV4;F6IQV3;F6IQV2;F6IQV1;F6IQV0;F6IQU9;F6IQU8;F6IQT2;F6IQS9;F6IQS6;F6IQS5;F6IQS4;F6IQS3;F6IQS2;F6IQS1;B0BKZ4;A5PHT6;X5MPH1;X5MNS3;A0A060VHG8;A0A060VHD9;A0A060VG17;Q861F7;Q861F6;Q8HX85;O78126;O19642;W1I6E7;S6FW97;S6AU97;Q9TQB6;Q9TQ73;Q9TQ65;Q704F3;Q53Z42;Q3LRR6;Q2LC95;P79603;I6YAY1;G9FXD6;E5FQ49;D9UB09;D9UB07;D7GNM8;D5H3T6;D5H3T4;D5H3T1;C5IWX9;C5IWX5;B2LT55;A5A4G3;P01892;Q6L6T0;Q0P6N9;E0WMM9;D7GNM3;D3YFD3;R9WXA9;W8NKY4;G3C9V4;S5T475;Q9BD14;Q95IB1;Q4VYU3;Q206J8;N1NUT9;M9TME2;M1XK38;D7NMJ8;D1H0T5;B0LV25;V9W2L5;V5NE49;V5L197;Q6L6Q3;Q6L6P9;Q6L676;Q4W6C5;Q4W6C3;M9R0Q6;M4VMS3;M4VJS4;M4NJR5;I7ARY8;I3VB20;H2D5G1;G9HRQ8;G9G815;G9FTK1;G4XZE8;F8WSJ2;F8WS75;F2XI29;E3WH34;D2KZ35;D2KZ30;D1J6X4;B1Q4W3;B1Q4R7;B1B727;B1B6Q5;B1B6Q4;A8ILL3;F2XI28;T1WGK5;K4TZQ2;G1UK07;F2X5P6;D3YLL1;D2KZ37;B2DFV9;A2V815;Q29757;Q06FC3;Q4JLV8;Q6VS85;A7MAP2;D5H3T7;U5YKC3;F6IQS8;F6IQS7;U5YJN4;U5YJP4;U5YJN8;F6IQT1;U5YMP0;U5YMH5;U5YKE3;U5YJP1;U5YJJ1;F6IQU6;F6IQU5;F6IQU4;F6IQU3;F6IQU2;F6IQU1;F6IQU0;F6IQT9;F6IQT8;F6IQT7;F6IQT6;F6IQT5;F6IQT0;U5YJH8;F6IQU7;A0A060VHF3;X5MBH5;A0A060VG36;A0A060VD05;W0UTP4;Q8WUX3;D0V481;A0A060VHE9;I3ZN76;Q95J05;Q8HWQ9;Q8HWQ8;Q5MAG5;C5IWY8;C5IWX6;V6A6U0;E3Q1L4;Q52QV5;P10316;Q50I06;Q6F3H0;L0N4J2;I7D6N7;I7CT52;I7C6A9;D2KZ54;D2KZ34;A7M780;I3VB19;B3GUH8;N1NT54;M4RBI8;M1JPA6;L7XEN4;J7RT43;J7JQD3;S0F3A9;R4RUH0;R4L0K0;Q1W4D6;Q0PMJ8;M4RBI3;I6R1A7;E5FYM9;C6H0P0;Q6R741;B6E278;E7BDE1;D6CIC3;Q704T5;Q6IV49;K0P0H0;A6YT91;B2G3G4;Q5G274;F6IR58;S6A6J7;F6IQT4;F6IR57;F6IR56;F6IR55;F6IR54;A0A060VG23;X5MNS5;A0A060VHJ3;A0A060VCY9;A0A060VCY8;A0A060VCU4;X5MBG6;Q9GJ24;A4UTT5;Q52YL7;Q7YQ33;D5H3T9;A5JUX0;E5FQ45;U6A3P1;Q1ELT0;I3ZN80;B1PKZ2;P01891;O02922;Q9UQT7;R9RI97;Q95IZ1;D2U6Y7;Q9MW39;Q75NY8;Q5NTA3;Q45XP5;Q3HNF7;Q19K87;M9TGE6;M4R8T1;M4QUR9;K7YHC3;K4NP16;J7SAX1;J7H9Z9;I7H3R2;I7GY09;I7B0X0;I6Y0B1;I6RB65;I2GUK2;H9EHK6;H9BWE6;H6UVX7;H2AM00;G0ZMZ0;F8WSC6;F2XI36;E9RK91;D9UAX5;D2KZ56;D2KZ36;D2KZ32;D2KZ28;D1MZT8;D1MZT6;C6H0N7;B9VJL8;B7XH57;B3WFC9;B3WFC8;A6H592;A6H591;A6H346;A4URF1;A0PBY4;A0A060GVB3;F8KA50;C5J4N4;I4EPY0;L8BTZ4;D7RTU8;Q9MYB7;A7Y1U3;Q6R740;D5H3W0;A0JKD2;H6SHQ5;U5YMK3;U5YMF4;U5YKI0;U5YJR6;U5YJH4;M1JNG6;G9FTJ9;F6IR53;F6IR52;F6IR51;F6IR46;F6IR45;F6IR44;F6IR43;F6IR42;F6IR41;F6IR38;F6IR37;F6IR36;F6IR35;F6IR34;A0A060VCW9;Q861E7;Q7YP31;Q2MJJ6;Q2MJJ5;M1RL68;I6QSJ6;I2HA75;G4Y0P1;E9BVB6;D9J2K2;D5H3V5;C5IWY7;C5IWY6;B7VU66;B1PKZ1;Q8MGT5;A0N0E2;P30457;P30453;P16190;P16189;Q7YP23;Q9GJP2;Q9GJ61;Q7YNY0;Q7YNX7;A2BCQ5;U3N9E1;F6IB50;I0J9E2;X5JBB1;W1IB93;U6ERM7;T2MKA2;S6BEP5;S6B0Q5;S4VAM7;Q70I55;Q6L625;Q6I6G7;Q6I688;Q4ZG94;Q45NE2;Q0VJ91;M5EF02;M5A7E7;M4THY5;K7X0G5;K4ULX4;K4NRQ4;J7G6V4;I6S4P2;I6M4H6;I3TBB5;G9G814;G4VU13;F8WSC7;E3WH35;E2GHW7;E0WN85;E0WN82;D2KZ33;D1MZT9;D1H0Y9;C6H0P2;C6H0P1;C6H0N9;B6VA00;B2DFV8;B2CZA7;B2CY74;A2Q116;J7FXG8;G0Z2K5;E0WN63;F8LSY1;E5G961;C6KGV6;C6KF02;B1PMG1;P79556;Q06FC4;Q6ZUK5;Q6IUZ5;Q19BJ8;F0VRV7;D5H3W1;D6CIC2;X4YZB9;U5YKH4;U5YJR3;G9FTK0;F6IR30;F6IR29;F6IR28;F6IR27;F6IR26;B7VGE8;U5YMR8;U5YJL8;F6IR50;F6IR49;X5MPH4;A0A060VCX0;A0A060VCU0;A0A061DEB5;D7GN81;X5M4Y6;Q6EXB0;Q5SPM2;I6R4N3;I3ZN79;D7GM33;B0UXQ0;A0A060CYB7;D9UB06;P30512;P30456;P30450;P18462;A5A8M7;H2DH14;I6QLC3;B2G3P7;B0BF01;Q5NTA2;Q4QZC0;I6S8T6;E0WN61;Q9UIP8;U5YMR3;Q9MY52;M9R644;Q29946;B7XGC2;D9IDV1;Q8MHN8;C8ZLL1;A1KWT0;L8B932;I3ZN78;C5IWZ0;C5IWY9;P30459;T2ET92;Q45NE1;Q0GE97;J7RE54;I3VB22;E7BBA3;E0WMV3;E0WMN2;D5GU49;W6JNQ2;A4URH6;Q9GJ45;F6IR39;X5MI18;A0A061DD14;Q9GJ43;X5M4Z2;Q9GJ44;Q5RJ27;B5TZV4;S6AP35;P10314;K0P0J0;A4URG9;A2VBZ8;X2L7S8;Q29945;Q29947;E2FIL8 HLA-A;HLA;MHC class I HLA-A;HLA-A*0226;HLA-A*02;HLA A;HLA-A*31;HLA-A*33;HLA-A*0201V3;HLA-DQB1 HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-29 alpha chain;HLA class I histocompatibility antigen, A-43 alpha chain;HLA class I histocompatibility antigen, A-26 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain no no 0 0 1 0 By MS/MS 1 13.836 14.187 3 0.026244 2479 20181213_JW_Orientia_Karp_2_3 73.758 57.092 338080 0 0 0 0 0 338080 0 0 9099 267;709;857;1906;2066;861 7782 55150 35095 35095 189 1 THMTHHPISDHEATLR Oxidation (M) 1897.8853 0.88532795 268 R9WYX8;Q4A1H0;M1KE04;L7X986;I2E8C4;E7BBA1;D1MYY8;C7U1K2;C7E539;C6H0N8;B7VBV1;B6VA02;B6ECH6;B6ECH2;A7MAK2;D0AB29;A5PHP7;Q6IVJ9;Q5SRN7;Q861B7;F6IQV8;F6IQV7;B4E2X4;X5MFE4;A0A060VCY6;A0A060VCY5;Q29840;X5D2K4;D5H3U2;D5H3U1;B2R7U3;B1PKY1;A9YWM1;Q5SRN5;P04439;A0ZXY8;J7SBK9;D0W032;G8FQ53;D6CIB2;E1Y422;G5CJS3;B7VCC4;W6CHX3;Q7YPW4;U5YMP4;F6IQV6;A7DZQ5;X5MPH3;X5MI21;X5MBH2;X5MFD7;A0A060VHD0;A7MAP4;C5IWY0;I0J2M4;A1Z1D7;A7L858;A5I8L2;Q5ND69;A0A060VG34;A0A060VHC2;Q2A688;A0A060VD16;V6CKU4;X4YT82;W8NKP1;W6CJ57;W0G8I7;U6BZQ8;S5U3G8;S0F2B1;R4NLT9;R4NJ42;R4KXX0;Q9TQP8;Q6F3E3;Q4W6C0;M9TNT6;M9T819;M5ETC1;M5A8I6;M4TCH1;L7Y4K8;J7I2U3;I7B4Y2;I3VB21;I3TBB8;I0DHJ2;I0DFI9;H2D5G2;G0UE14;G0M6G1;F8T1H2;F8LSY2;F8LSV3;F2XI31;E3WH33;E1Y7G0;D1MZT7;D0VFI1;C9E9Y0;C7C6D3;C7C695;C6H0N6;C0MP56;B6VA01;B3VE19;B2DFW7;B1Q4X5;B1Q4X2;A9IW15;A8E0Y3;A5PHT9;A2Q117;A0JHM7;A0A060GTH2;A0A060GQ71;Q0E7X7;D9UAY2;D6CIC1;D5LN74;D5H3U5;B1PT16;G9FTK2;G0Z6Y6;U5YMP9;U5YML8;U5YKF9;U5YKC8;U5YJQ0;U5YJP8;U5YJK1;U5YJJ6;F6IQZ1;F6IQZ0;F6IQY9;F6IQY8;F6IQY5;F6IQY2;F6IQY1;F6IQY0;F6IQX7;F6IQX6;F6IQX4;F6IQX3;F6IQX2;F6IQX1;F6IQX0;F6IQW9;F6IQW8;F6IQW7;F6IQW6;F6IQW5;F6IQW4;F6IQW3;F6IQW2;F6IQW1;F6IQW0;F6IQV9;A0A060VG42;X5MI15;Q5S3G3;H2DMX5;F4NCR9;D9UB10;D7GM35;D5H3U6;D5H3U4;D5H3U3;D0V0C4;C5IWZ2;P13746;P13746-2;B4DVB9;B4DVC4;I2GUK1;W1IAW1;E9ABI3;E1Y6M4;I7A6W0;I3TBB9;G9FTJ8;B2DFW8;V5L1W2;R9UR01;Q95IG6;Q1EPW2;Q0GC70;M9TIT3;M4VSN7;G8FV57;F2XI30;D5H3W3;D5H3W2;A5PHT4;A4URF2;W8SKC0;T2MJM6;R9UTP9;R7RVB7;R7RV73;M5EE32;L7UVL0;K7SHJ4;H6SSQ1;H6SSQ0;G8ZKX4;E0WN91;E0WN84;E0WMN1;D0RB02;C7U2Z0;C7ENH9;B6ECH3;A9QUT7;A7WPI8;W5ZPB5;Q6IUZ4;B5A9M9;Q0E7X3;Q860B4;B7VF83;U5YJM7;F6IQY4;F6IQY3;F6IQX9;F6IQX8;U5YKF4;F6IQY7;F6IQY6;U5YMI4;U5YME5;U5YMJ8;U5YMI0;U5YJL3;F6IR32;F6IR31;Q95IG4;F6IQS0;F6IQR9;A0A060VD08;A0A060VCZ1;A0A060VCX2;A0A060VCW6;Q5MCQ6;L8B936;D9UB11;D9UB05;Q8MGZ1;C9EIW0;Q2LC93;Q95HA5;Q5ZGM8;Q5SUL5;M4QEH4;I3ZN77;C5IWX4;Q59GJ2;P16188;P30455;P30443;E0WN92;D3JW64;N1NV67;M5EF56;H6SFV4;C5J3U2;S0F2I4;J7JHS1;E0WN90;X5EM81;W8Y4A2;W6CGW3;W0FBM8;V5V1E3;U6ER51;U3R9Y1;T2BQE4;S6B3R2;S4VA55;S0F2B7;S0F2B5;R4L6P2;Q9GIP0;Q9BCN8;Q8SNC6;Q8HWT0;Q6L675;Q6F3E2;Q6AW25;Q5NTA9;Q4ZG93;Q4W5U0;Q3YBM1;Q2PP85;Q25BN7;Q1EJP6;Q0E7X5;N1NRX6;M5EFF5;M4X2U5;M4RMN4;M4RCG9;M4R8V8;M4R8V2;M4R8T6;M4NUQ2;M4NJM4;M1LMH3;M1KDJ9;M1K8H4;L7V338;L7QJU3;L7QJ97;L7QJ95;J7JGT4;J7HGX9;J7HDW9;I7HCZ5;I7H3R1;I6R2V6;I6QYX3;I6M4H5;I3Y3J5;I1VXL8;I1U8N1;I1U8N0;H9C3L3;H2DEU0;G9DBG6;G8FRJ5;F5CIU1;F2XI35;F2XI34;F2XI33;F2XI32;E9ABX3;E7BJ52;E3Q0X4;E2G792;E0YW13;E0WN60;E0WN57;D9UC12;D8MIW0;D6Q0R2;D3JW65;D2KZ55;D2KZ53;D1MYY9;C7EW71;C7EW70;C6L836;C4PFW7;C3VAL4;C1KBJ6;B9VJL7;B3VE20;B3IYE6;B2NJ13;B2NIY8;B2DFV0;B2DFH6;B2DFH5;B2DFH4;B0FWH0;A9QVM4;A6YT92;A4URG8;A4GWZ1;A2VC06;A2VBZ7;A0PBY5;A0A060N342;A0SXS8;Q6IV48;Q2L4F0;Q14SN2;D9UAY3;D6CIC0;D6CIB9;D5H3V9;D5H3V8;A5PHT7;Q6IVJ8;Q6IVJ7;Q6IVJ6;Q6IVJ5;Q5D1X1;U4PDP4;Q860B5;C0KLT0;H6SHQ4;F6IR33;U5YKD6;U5YMM6;B7ZAP7;U5YMQ8;U5YMJ4;U5YMI9;U5YMF0;U5YKG9;U5YKG4;U5YJQ7;U5YJL1;U5YJK6;U5YJH0;F6IR24;F6IR23;F6IR22;F6IR20;F6IR19;F6IR16;F6IR15;F6IR11;F6IR10;F6IR09;F6IR08;F6IR07;F6IR06;F6IR05;F6IR04;F6IR03;F6IR02;F6IR01;F6IR00;F6IQZ9;F6IQZ8;F6IQZ7;F6IQZ6;F6IQZ5;F6IQZ4;F6IQZ3;F6IQZ2;D9UAY1;A8YQE6;A0A060VCY7;X5MBH7;A0A060VD10;A0A060VCZ3;O15506;L8B934;X5LKD6;Q2A689;I4EPX9;Q9TQ74;Q9MY51;Q95J07;Q95J06;Q708C4;Q29907;Q29689;M9QZ33;E5FQ47;E3UN97;D9UB08;D5H3V3;D5H3U9;D5H3U8;C5IWY5;C5IWY4;C5IWY3;B6ETN7;B2MVI0;B1PKY3;P30447;P05534;Q2L4E7;Q0MSI1;F8T959;B7UE87;E7AJF9;B7ZA80;Q6PW03;E1Y6U1;A4URH5;U4PSC0;R4L6H2;K4ML26;D0W033;B0LL97;N1LK74;G8ZKX2;E0WN58;X2J8Y7;I6R2W1;A4GWZ0;D9UB28;D5H3U7;A7LB37;A6YT90;U5YMM3;U5YKD2;U5YJN1;F6IR21;F6IR18;F6IR17;F6IR25;U5YJQ4;K7WT83;Q09160;A7MAP3;Q9MY72;E0WN59 HLA-A;HLA;HLA-B;HLA-A*01;HLA-A24AK HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-23 alpha chain;HLA class I histocompatibility antigen, A-24 alpha chain;HLA class I histocompatibility antigen, A-80 alpha chain no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 17.571 17.931 4 0.012811 3320 20181213_JW_Orientia_Karp_1_3 78.69 46.538 51189000 13608000 9728200 13018000 2919500 0 0 5055200 6860200 9100 268 7783 55151;55152;55153;55154;55155;55156 35096;35097;35098;35099;35100 35098 190 5 THMTHHPISDHEATLR Unmodified 1881.8904 0.89041333 268 R9WYX8;Q4A1H0;M1KE04;L7X986;I2E8C4;E7BBA1;D1MYY8;C7U1K2;C7E539;C6H0N8;B7VBV1;B6VA02;B6ECH6;B6ECH2;A7MAK2;D0AB29;A5PHP7;Q6IVJ9;Q5SRN7;Q861B7;F6IQV8;F6IQV7;B4E2X4;X5MFE4;A0A060VCY6;A0A060VCY5;Q29840;X5D2K4;D5H3U2;D5H3U1;B2R7U3;B1PKY1;A9YWM1;Q5SRN5;P04439;A0ZXY8;J7SBK9;D0W032;G8FQ53;D6CIB2;E1Y422;G5CJS3;B7VCC4;W6CHX3;Q7YPW4;U5YMP4;F6IQV6;A7DZQ5;X5MPH3;X5MI21;X5MBH2;X5MFD7;A0A060VHD0;A7MAP4;C5IWY0;I0J2M4;A1Z1D7;A7L858;A5I8L2;Q5ND69;A0A060VG34;A0A060VHC2;Q2A688;A0A060VD16;V6CKU4;X4YT82;W8NKP1;W6CJ57;W0G8I7;U6BZQ8;S5U3G8;S0F2B1;R4NLT9;R4NJ42;R4KXX0;Q9TQP8;Q6F3E3;Q4W6C0;M9TNT6;M9T819;M5ETC1;M5A8I6;M4TCH1;L7Y4K8;J7I2U3;I7B4Y2;I3VB21;I3TBB8;I0DHJ2;I0DFI9;H2D5G2;G0UE14;G0M6G1;F8T1H2;F8LSY2;F8LSV3;F2XI31;E3WH33;E1Y7G0;D1MZT7;D0VFI1;C9E9Y0;C7C6D3;C7C695;C6H0N6;C0MP56;B6VA01;B3VE19;B2DFW7;B1Q4X5;B1Q4X2;A9IW15;A8E0Y3;A5PHT9;A2Q117;A0JHM7;A0A060GTH2;A0A060GQ71;Q0E7X7;D9UAY2;D6CIC1;D5LN74;D5H3U5;B1PT16;G9FTK2;G0Z6Y6;U5YMP9;U5YML8;U5YKF9;U5YKC8;U5YJQ0;U5YJP8;U5YJK1;U5YJJ6;F6IQZ1;F6IQZ0;F6IQY9;F6IQY8;F6IQY5;F6IQY2;F6IQY1;F6IQY0;F6IQX7;F6IQX6;F6IQX4;F6IQX3;F6IQX2;F6IQX1;F6IQX0;F6IQW9;F6IQW8;F6IQW7;F6IQW6;F6IQW5;F6IQW4;F6IQW3;F6IQW2;F6IQW1;F6IQW0;F6IQV9;A0A060VG42;X5MI15;Q5S3G3;H2DMX5;F4NCR9;D9UB10;D7GM35;D5H3U6;D5H3U4;D5H3U3;D0V0C4;C5IWZ2;P13746;P13746-2;B4DVB9;B4DVC4;I2GUK1;W1IAW1;E9ABI3;E1Y6M4;I7A6W0;I3TBB9;G9FTJ8;B2DFW8;V5L1W2;R9UR01;Q95IG6;Q1EPW2;Q0GC70;M9TIT3;M4VSN7;G8FV57;F2XI30;D5H3W3;D5H3W2;A5PHT4;A4URF2;W8SKC0;T2MJM6;R9UTP9;R7RVB7;R7RV73;M5EE32;L7UVL0;K7SHJ4;H6SSQ1;H6SSQ0;G8ZKX4;E0WN91;E0WN84;E0WMN1;D0RB02;C7U2Z0;C7ENH9;B6ECH3;A9QUT7;A7WPI8;W5ZPB5;Q6IUZ4;B5A9M9;Q0E7X3;Q860B4;B7VF83;U5YJM7;F6IQY4;F6IQY3;F6IQX9;F6IQX8;U5YKF4;F6IQY7;F6IQY6;U5YMI4;U5YME5;U5YMJ8;U5YMI0;U5YJL3;F6IR32;F6IR31;Q95IG4;F6IQS0;F6IQR9;A0A060VD08;A0A060VCZ1;A0A060VCX2;A0A060VCW6;Q5MCQ6;L8B936;D9UB11;D9UB05;Q8MGZ1;C9EIW0;Q2LC93;Q95HA5;Q5ZGM8;Q5SUL5;M4QEH4;I3ZN77;C5IWX4;Q59GJ2;P16188;P30455;P30443;E0WN92;D3JW64;N1NV67;M5EF56;H6SFV4;C5J3U2;S0F2I4;J7JHS1;E0WN90;X5EM81;W8Y4A2;W6CGW3;W0FBM8;V5V1E3;U6ER51;U3R9Y1;T2BQE4;S6B3R2;S4VA55;S0F2B7;S0F2B5;R4L6P2;Q9GIP0;Q9BCN8;Q8SNC6;Q8HWT0;Q6L675;Q6F3E2;Q6AW25;Q5NTA9;Q4ZG93;Q4W5U0;Q3YBM1;Q2PP85;Q25BN7;Q1EJP6;Q0E7X5;N1NRX6;M5EFF5;M4X2U5;M4RMN4;M4RCG9;M4R8V8;M4R8V2;M4R8T6;M4NUQ2;M4NJM4;M1LMH3;M1KDJ9;M1K8H4;L7V338;L7QJU3;L7QJ97;L7QJ95;J7JGT4;J7HGX9;J7HDW9;I7HCZ5;I7H3R1;I6R2V6;I6QYX3;I6M4H5;I3Y3J5;I1VXL8;I1U8N1;I1U8N0;H9C3L3;H2DEU0;G9DBG6;G8FRJ5;F5CIU1;F2XI35;F2XI34;F2XI33;F2XI32;E9ABX3;E7BJ52;E3Q0X4;E2G792;E0YW13;E0WN60;E0WN57;D9UC12;D8MIW0;D6Q0R2;D3JW65;D2KZ55;D2KZ53;D1MYY9;C7EW71;C7EW70;C6L836;C4PFW7;C3VAL4;C1KBJ6;B9VJL7;B3VE20;B3IYE6;B2NJ13;B2NIY8;B2DFV0;B2DFH6;B2DFH5;B2DFH4;B0FWH0;A9QVM4;A6YT92;A4URG8;A4GWZ1;A2VC06;A2VBZ7;A0PBY5;A0A060N342;A0SXS8;Q6IV48;Q2L4F0;Q14SN2;D9UAY3;D6CIC0;D6CIB9;D5H3V9;D5H3V8;A5PHT7;Q6IVJ8;Q6IVJ7;Q6IVJ6;Q6IVJ5;Q5D1X1;U4PDP4;Q860B5;C0KLT0;H6SHQ4;F6IR33;U5YKD6;U5YMM6;B7ZAP7;U5YMQ8;U5YMJ4;U5YMI9;U5YMF0;U5YKG9;U5YKG4;U5YJQ7;U5YJL1;U5YJK6;U5YJH0;F6IR24;F6IR23;F6IR22;F6IR20;F6IR19;F6IR16;F6IR15;F6IR11;F6IR10;F6IR09;F6IR08;F6IR07;F6IR06;F6IR05;F6IR04;F6IR03;F6IR02;F6IR01;F6IR00;F6IQZ9;F6IQZ8;F6IQZ7;F6IQZ6;F6IQZ5;F6IQZ4;F6IQZ3;F6IQZ2;D9UAY1;A8YQE6;A0A060VCY7;X5MBH7;A0A060VD10;A0A060VCZ3;O15506;L8B934;X5LKD6;Q2A689;I4EPX9;Q9TQ74;Q9MY51;Q95J07;Q95J06;Q708C4;Q29907;Q29689;M9QZ33;E5FQ47;E3UN97;D9UB08;D5H3V3;D5H3U9;D5H3U8;C5IWY5;C5IWY4;C5IWY3;B6ETN7;B2MVI0;B1PKY3;P30447;P05534;Q2L4E7;Q0MSI1;F8T959;B7UE87;E7AJF9;B7ZA80;Q6PW03;E1Y6U1;A4URH5;U4PSC0;R4L6H2;K4ML26;D0W033;B0LL97;N1LK74;G8ZKX2;E0WN58;X2J8Y7;I6R2W1;A4GWZ0;D9UB28;D5H3U7;A7LB37;A6YT90;U5YMM3;U5YKD2;U5YJN1;F6IR21;F6IR18;F6IR17;F6IR25;U5YJQ4;K7WT83;Q09160;A7MAP3;Q9MY72;E0WN59 HLA-A;HLA;HLA-B;HLA-A*01;HLA-A24AK HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-23 alpha chain;HLA class I histocompatibility antigen, A-24 alpha chain;HLA class I histocompatibility antigen, A-80 alpha chain no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 20.891 21.141 4 0.005111 4132 20181213_JW_Orientia_Karp_1_3 84.62 67.881 12435000 3259500 3966200 3402600 732540 0 0 1074100 0 9101 268 7783 55157;55158;55159;55160;55161 35101;35102;35103;35104 35102 4 THNLEPYFESFINNLR Deamidation (NQ) 1993.9534 0.95339074 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 6 4 7 6 5 5 68.094 68.258 2;3 5.3869E-24 27431 20181213_JW_Orientia_Karp_3_2 217.01 152.53 559850000 134170000 19098000 117690000 17255000 137360000 54779000 55595000 23909000 + 9102 995;996 7784 55162;55163;55164;55165;55166;55167;55168;55169;55170;55171;55172;55173;55174;55175;55176;55177;55178;55179;55180;55181;55182;55183;55184;55185;55186;55187;55188;55189;55190;55191;55192;55193;55194;55195;55196;55197;55198;55199;55200 35105;35106;35107;35108;35109;35110;35111;35112;35113;35114;35115;35116;35117;35118;35119;35120;35121;35122;35123;35124;35125;35126 35126 361;362;363 21 THNLEPYFESFINNLR Unmodified 1992.9694 0.96937516 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 2 4 4 67.669 67.898 2;3 2.5079E-14 30365 20181213_JW_Orientia_Karp_1_1 207.08 136.82 1820600000 237140000 137750000 132970000 1842100 536220000 303840000 103510000 367360000 + 9103 995;996 7784 55201;55202;55203;55204;55205;55206;55207;55208;55209;55210;55211;55212;55213;55214;55215;55216;55217;55218;55219;55220 35127;35128;35129;35130;35131;35132;35133;35134;35135;35136;35137;35138;35139;35140 35127 13 THNLEPYFESFINNLRR Unmodified 2149.0705 0.070486187 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 61.87 62.129 3;4 0.00094095 23939 20181213_JW_Orientia_Karp_2_2 105.14 77.106 125340000 32051000 0 0 8649900 68941000 15701000 0 0 + 9104 995;996 7785 55221;55222;55223;55224;55225;55226 35141;35142;35143 35143 3 THPAWTGK Unmodified 896.45045 0.45045083 1164 Karp_00616 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 17.082 17.47 2 0.0098137 3714 20181213_JW_Orientia_Karp_1_1 104.44 68.943 255750000 74407000 44425000 39406000 21559000 4370300 0 22199000 49379000 9105 1164 7786 55227;55228;55229;55230;55231;55232;55233 35144;35145;35146;35147;35148;35149 35145 6 THTSTIQIR Unmodified 1055.5724 0.57235688 1344 Karp_01520 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 23.226 23.62 2 0.011765 5215 20181213_JW_Orientia_Karp_1_2 90.601 51.809 16577000 0 3096100 4152200 2253300 2242100 872500 1763900 2196600 9106 1344 7787 55234;55235;55236;55237;55238;55239;55240 35150;35151 35150 2 THVTHHPLSDHEATLR Unmodified 1849.9183 0.91834264 915 I7GYF8;E9RJS6;E1Y6P6;X5JZ45;W8YSA8;W8FKE1;W1ICE9;V6CI97;U3MLI1;S5FMM0;S5DU09;S5DU05;S5DN76;S5DN70;S5DN66;S5DLG2;S5DLF7;S5DLF2;S5DI32;S5DI31;S5DHQ8;S5DHQ4;R9RIA4;R9RH57;R9RH45;R9RH39;R4RWU8;Q8MHM5;M9ZV78;I7JB69;I7HBP7;I2GUK7;I1V5E9;G9MD19;G9I1P6;G0WJF1;F6KVT8;F2XI56;E9LMN8;E3Q1I7;E3Q1I5;E3Q0Y3;E1Y7F7;E1XUP6;E0WN45;E0WN44;C7EW73;C7C619;B5MA82;A7LH95;A6YQG8;E0WMP9;F5A4J5;E9NPN4;D9UAZ8;D9UAZ7;D9UAZ3;C7EDP3;C1K9J2;C0KTQ6;C0KTQ5;I6R1M9;H2B3F1;G1C120;A0A060VCV6;A0A060VCU7;A8YQF3;E3Q1I0;X5MI27;V5NSW9;V5NQY7;V5NQX7;V5NQV6;V5NQT2;V5NQQ5;V5NQD6;V5NQD2;V5NQ93;F6IQL8;F6IQL7;F6IQL6;F6IQL5;F6IQL4;F6IQL3;F6IQL2;F6IQL0;F6IQK9;F6IQK8;F6IQK7;F6IQK6;F6IQK5;F6IQK4;F6IQK3;F6IQK2;F6IQK1;F6IQJ9;F6IQJ8;F6IQJ7;B9WPN5;W1I435;Q95HC2;Q5C9P9;G1FTT7;D0AB34;B5BLP2;B3WFP3;B0JF23;A8YQF2;A6Q0R3;A6H581;A6H578;V5NQV1;S6B6S2;Q860B0;Q85ZX8;Q7YQB2;Q6R742;Q6R739;Q64EU5;Q3KT81;Q27W00;Q001S2;O19617;I2G9F8;H2B3H3;F1CZ00;D6CJC1;D3K0R2;C1K0Y0;C1K0X8;C1K0X7;B2ZSE2;A4Q9R6;A0A060VHI0;A0A060VD27;A0A060VD03;A0A060VCX7;A2AEA2;B4DVY0;P10321;S5DI27;S5DHR2;F8LSV7;F4NC98;S5DU12;S5DU01;E9ABX9;D9UAX0;C7EAN4;F2XI57;Q8SNB1;B4E316;V5NQE0;V5NRE1;V5NQY2;F6IQM1;F6IQL1;F6IQM0;F6IQK0;V5NQW1;F6IQL9;F5CL10;A0A060VHI5;E0WMY7;V5NRE4;B1PQ27;A0A068W643;W1EC24 HLA-C;HLA-Cw;HLA HLA class I histocompatibility antigen, Cw-7 alpha chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 19.584 19.898 3;4 0.00025035 3779 20181213_JW_Orientia_Karp_1_3 134.06 0 118690000 35299000 18032000 20792000 8305500 5430100 6643200 19677000 4514700 9107 915 7788 55241;55242;55243;55244;55245;55246;55247;55248;55249;55250;55251;55252;55253;55254;55255 35152;35153;35154;35155;35156;35157;35158;35159;35160;35161;35162 35154 10 THVTHHPVSDHEATLR Unmodified 1835.9027 0.90269258 741;933 B8XPR9;R9USF5;G1UK08;E9RKA5;F4NC13;F4NBT6;Q29700;Q6J4L1;K4N0X3;I7HFK0;I0DFJ4;C7C3M7;B2DFX1;U6BR60;S4VE60;Q1M2R9;W6JM27;Q8MGY9;Q861D3;Q861D2;Q861D1;Q861D0;Q861C9;Q861C8;Q861C7;C9E311;B4XKD1;Q8MHM7;Q5QR51;Q5QR50;Q5QR49;Q5QR38;O19508;Q14838;Q9MYI0;Q7YP28;Q7YNY3;Q5W1M0;G3CC15;I7LL27;I2GUK6;V5NQT8;F6IQG6;F6IQG5;F6IQG4;F6IQG1;F6IQG0;F6IQF9;F6IQF6;F6IQI5;S5DN91;I7GVS4;I6QNT6;H8XBT9;F6IQP1;E3Q0X7;V5NQU4;X4Z1S5;W8NQA2;V6CKW5;U6C2M6;U6C058;S6BXF8;S5DTQ7;S5DTG6;S5DTF8;S5DTF3;S5DTE6;S5DN29;S5DN08;S5DMZ8;S5DMZ0;S5DMY4;S5DLA8;S5DL99;S5DL95;S5DL90;S5DHY3;S5DHX8;S5DHX2;S5DHM5;S5DHK9;S5DHK4;S5DHJ9;R9RIA9;R4S7Z5;Q5GML2;N1NSZ1;I7GYF9;H9BSP5;H9B8Z2;H3K397;G9MD20;G9MCL1;G9I1P5;G8GJC1;G1UK12;G1UK11;G0WJF0;F2XI55;F2XI54;F2XI53;F2XI52;F1CK31;E9RKB0;E9RK92;E3Q1I4;E1CJD8;D6QTC5;D5L7X0;B6VPZ5;A7MAK3;O19653;H9C681;A5PHP9;A5PHP8;L7SQ42;E0Z0E3;D7RVC0;A0A060VD24;A0A060VCY2;V5NSU6;V5NST9;V5NST4;V5NST1;V5NRC4;V5NRB9;V5NRB3;V5NRA9;V5NRA5;V5NRA1;V5NQW6;V5NQW2;V5NQV4;V5NQU9;V5NQT5;V5NQT0;V5NQS5;V5NQR7;V5NQC2;V5NQB9;V5NQB5;V5NQB2;V5NQA7;F6IQF1;F6IQF0;F6IQE9;F6IQE8;F6IQE7;F6IQE6;F6IQE5;F6IQE4;F6IQE2;F6IQE1;F6IQE0;F6IQD9;F6IQD8;F6IQD7;F6IQD6;F6IQD5;F6IQD4;F6IQD3;F6IQD2;F6IQD1;F6IQD0;F6IQC7;F6IQC6;F6IQC5;F6IQC4;F6IQC3;F6IQC2;F6IQC1;F6IQC0;F6IQB9;F6IQB8;F6IQB7;F6IQB6;F6IQB5;F6IQB4;F6IQB2;F6IQB1;D9UB02;U4KJ84;F6IQE3;C3VMX5;A5PHT5;D9UB04;X5MPH5;V6A6X3;Q7YQB3;Q53YP1;Q53YN9;I3ZN87;C5IYE2;B8YBG3;A0A061DEZ3;Q96QL3;P04222;I7HBP5;V9Q5Q1;V5LE67;S5S0F8;S5DN45;S5DI10;S5DHN5;Q5R1M2;N1NT57;M5EF61;G9MD22;G9MCL3;G9G816;F5A503;E3Q0Y1;E3Q0Y0;E1XUP5;D8MIV9;D7GMU9;C7EW72;O78164;F2QL94;S5DLC4;D7GM41;I1XV05;A6H582;A0A060VCX9;Q8HWE9;Q707T8;Q707T7;D0F1S2;V5NSV6;V5NQW9;V5NQC6;F6IQG3;F6IQG2;F6IQF8;F6IQF5;F6IQF3;F6IQF2;F6IQF4;W0USZ9;I2GAE1;B9WPQ7;B2G4X1;A7MAP6;V6A703;V6A6X0;Q5D1W8;Q5D1W7;Q29954;I4IY68;F4MKW1;D7GN69;C7FFM0;A0A060VD06;Q9GJF2;Q95HN1;P30504 HLA-B;HLA-C;HLA-Cw*;HLA-Cw;HLA-CW HLA class I histocompatibility antigen, Cw-3 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain no no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 3 2 2 2 17.031 17.429 3;4 9.3331E-06 3312 20181213_JW_Orientia_Karp_1_3 157.09 1.995 130770000 27720000 19442000 23189000 5269800 2066300 19078000 11698000 22306000 9108 741;933 7789 55256;55257;55258;55259;55260;55261;55262;55263;55264;55265;55266;55267;55268;55269;55270;55271 35163;35164;35165;35166;35167;35168 35165 6 THYPAQQGEYQTHQPVYHK Unmodified 2311.077 0.077028128 1535 Q53GY1;O95817;C9JFK9 BAG3 BAG family molecular chaperone regulator 3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 26.009 26.368 4 0.014873 5340 20181213_JW_Orientia_Karp_2_2 69.485 54.231 32956000 8760800 0 3740900 6208900 4399100 3886100 3245000 2715300 9109 1535 7790 55272;55273;55274;55275;55276;55277;55278 35169;35170;35171;35172;35173 35172 5 THYSNIEANESEEVR Unmodified 1776.7915 0.79147037 1552 P04632;K7ELJ7;K7EM73;K7EIV0;A0A075B7C0;U3KQE2 CAPNS1 Calpain small subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 30.151 30.552 3 0.0003206 7476 20181213_JW_Orientia_Karp_2_1 166.09 105.69 130000000 36948000 24051000 27084000 16178000 7420900 0 10218000 8096600 9110 1552 7791 55279;55280;55281;55282;55283;55284;55285 35174;35175;35176;35177;35178;35179;35180 35177 7 THYSNIEANESEEVR Deamidation (NQ) 1777.7755 0.77548596 1552 P04632;K7ELJ7;K7EM73;K7EIV0;A0A075B7C0;U3KQE2 CAPNS1 Calpain small subunit 1 yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 32.419 32.768 3 0.022899 9186 20181213_JW_Orientia_Karp_1_2 84.759 39.834 14705000 2789600 6285100 2208300 797130 0 0 2625000 0 9111 1552 7791 55286;55287;55288;55289;55290 35181;35182 35182 1038 2 TIADLENIKMVNK Oxidation (M);2 Deamidation (NQ) 1505.7647 0.76471026 1351 Karp_01529 yes yes 0 2 1 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 55.109 55.482 2 0.021392 22874 20181213_JW_Orientia_Karp_1_1 79.489 24.405 54551000 17986000 12007000 15622000 2401800 5266900 0 622730 644680 9112 1351 7792 55291;55292;55293;55294;55295;55296;55297 35183 35183 806;807 926 1 TIAECLADELINAAK Unmodified 1630.8236 0.82362212 99 M0QZN2;M0R0F0;Q53G25;A0A024R4Q8;M0R0R2;P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 72.651 72.728 2 2.4438E-27 29404 20181213_JW_Orientia_Karp_3_2 229 148.25 90773000 38521000 0 0 3487500 0 0 34812000 13953000 9113 99 7793 55298;55299;55300;55301;55302 35184;35185;35186;35187 35187 4 TIAMDGTEGLVR Oxidation (M) 1277.6286 0.62855113 1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W079 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 41.412 41.683 2 0.0072899 13774 20181213_JW_Orientia_Karp_1_2 99.788 35.367 47323000 2736000 18492000 12631000 0 2582800 0 10881000 0 9114 1560 7794 55303;55304;55305;55306;55307 35188;35189 35188 1175 2 TIAPALVSK Unmodified 898.54877 0.54876789 93 A0A024R4F1;P06733;K7EM90;A4UCS8 ENO1 Alpha-enolase;Enolase yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 41.396 41.645 2 0.022441 12720 20181213_JW_Orientia_Karp_2_2 96.668 40.992 61606000 26964000 15997000 14184000 4461400 0 0 0 0 9115 93 7795 55308;55309;55310;55311;55312 35190;35191 35191 2 TIAQDYGVLK Unmodified 1106.5972 0.59717465 1773 Q06830;B2R4P2 PRDX1 Peroxiredoxin-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.92 46.193 2 0.00090067 16310 20181213_JW_Orientia_Karp_1_2 126.31 62.894 202760000 51375000 66357000 43760000 12614000 4933100 16141000 0 7578100 9116 1773 7796 55313;55314;55315;55316;55317;55318;55319 35192;35193;35194;35195;35196;35197 35193 6 TIAQGNLSNTDVQAAK Unmodified 1629.8322 0.83221298 1621 P22695;H3BRG4 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 38.028 38.211 2 0.004118 12049 20181213_JW_Orientia_Karp_1_2 107.11 58.107 21798000 7659500 4746600 9391500 0 0 0 0 0 9117 1621 7797 55320;55321;55322 35198 35198 1 TICTGVEMFK Oxidation (M) 1200.5519 0.55188071 1176;1244 Karp_00632;Karp_00911 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 41.827 42.148 2 0.00087783 13229 20181213_JW_Orientia_Karp_2_1 123.21 84.432 328590000 112940000 45734000 67399000 18748000 13621000 31035000 34948000 4162200 9118 1176;1244 7798 55323;55324;55325;55326;55327;55328;55329;55330 35199;35200;35201;35202;35203;35204;35205;35206;35207 35202 744 9 TICTGVEMFK Unmodified 1184.557 0.55696609 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 50.243 50.493 2 0.011138 19060 20181213_JW_Orientia_Karp_1_2 91.265 49.836 249460000 74906000 52337000 66940000 27107000 12211000 15956000 0 0 9119 1176;1244 7798 55331;55332;55333;55334;55335;55336 35208;35209;35210 35208 3 TIDDLKNQILNLTTDNANILLQIDNAR Unmodified 3051.62 0.62004194 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 75.202 75.202 3 1.7548E-05 30323 20181213_JW_Orientia_Karp_2_2 115.77 85.414 39902000 0 0 0 8868600 14872000 7017100 9143800 0 + 9120 798 7799 55337;55338;55339;55340 35211;35212 35212 2 TIDWVAFAEIIPQNQK Unmodified 1871.9781 0.97814893 1526 O75947;O75947-2;F5H608;A0PJH2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 74.294 74.315 2 1.3809E-06 34507 20181213_JW_Orientia_Karp_1_2 173.72 86.72 179570000 64711000 34330000 38783000 8111200 8842300 7460400 17330000 0 9121 1526 7800 55341;55342;55343;55344;55345;55346;55347 35213;35214;35215;35216;35217;35218 35214 6 TIEDGIHTADIYNPGISSK Unmodified 2029.9956 0.99564949 1187 Karp_00699 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.507 50.841 3 0.0061264 19674 20181213_JW_Orientia_Karp_1_1 81.854 49.165 86606000 22044000 21991000 13608000 9854800 0 8165000 10944000 0 9122 1187 7801 55348;55349;55350;55351;55352;55353 35219;35220;35221;35222;35223;35224;35225 35219 7 TIEYLEEVAITFAK Unmodified 1625.8552 0.85523983 885 E9KL44;P40939;B4DRH6;P40939-2;B4DDZ5 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 73.64 73.681 2 0.039688 34116 20181213_JW_Orientia_Karp_1_1 79.492 50.534 39478000 20657000 9890300 6186000 378910 0 0 0 2365300 9123 885 7802 55354;55355;55356;55357;55358 35226 35226 1 TIEYLQPNPASR Unmodified 1387.7096 0.70957864 1861 Q9UQD4;Q6FGM0;Q99961;M0QYE0;M0R0I3;Q99961-3;B7Z7W3;Q3V639;Q8IZ09;B7Z7M7;D3DRJ2;B7Z1K6;Q99962 SH3GL1;SH3GL2 Endophilin-A2;Endophilin-A1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 45.717 45.958 2 0.00051001 16549 20181213_JW_Orientia_Karp_1_1 149.49 101.65 96896000 27397000 42439000 0 6780900 13693000 6585900 0 0 9124 1861 7803 55359;55360;55361;55362;55363;55364 35227;35228 35227 2 TIFQGIAAK Unmodified 947.54402 0.54401687 593 B4DL86;B4E2U0;P52209-2;P52209;K7EMN2;K7EM49;K7EPF6 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 46.089 46.322 2 0.022263 16843 20181213_JW_Orientia_Karp_1_1 82.75 34.189 60626000 24507000 17841000 10656000 2303900 2079800 3238200 0 0 9125 593 7804 55365;55366;55367;55368;55369;55370 35229 35229 1 TIFQTVEGDFK Unmodified 1283.6398 0.63976774 1112 Karp_00294 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 57.299 57.644 2 0.0036793 24275 20181213_JW_Orientia_Karp_1_1 110.84 43.344 42026000 13018000 7348900 8402300 2263700 4156200 4572400 51426 2212900 9126 1112 7805 55371;55372;55373;55374;55375;55376;55377;55378 35230;35231 35230 2 TIGGGDDSFNTFFSETGAGK Deamidation (NQ) 2007.8698 0.86978027 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;F8VVB9;B4DN58;F8VRZ4;F8VS66;F8VWV9;F8VX09;F8VRK0;F8VXZ7;F8W0F6;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B7Z1K5;Q13748-2;Q6PEY2;Q8N532;F8VQQ4 TUBA1B;TUBA1A;TUBA1C;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 2 2 1 1 65.823 66.001 2 1.5051E-16 28129 20181213_JW_Orientia_Karp_1_2 191.15 131.07 148010000 49998000 39767000 31506000 178990 9159700 9681000 3997800 3721400 9127 512;1887 7806 55379;55380;55381;55382;55383;55384;55385;55386;55387;55388;55389 35232;35233;35234;35235;35236 35233 188 5 TIGGGDDSFNTFFSETGAGK Unmodified 2006.8858 0.88576469 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;F8VVB9;B4DN58;F8VRZ4;F8VS66;F8VWV9;F8VX09;F8VRK0;F8VXZ7;F8W0F6;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B7Z1K5;Q13748-2;Q6PEY2;Q8N532;F8VQQ4 TUBA1B;TUBA1A;TUBA1C;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 64.759 64.991 2 5.9506E-150 25702 20181213_JW_Orientia_Karp_2_1 342.28 232.13 1116900000 485350000 199670000 203850000 8114800 67140000 63346000 60867000 28601000 9128 512;1887 7806 55390;55391;55392;55393;55394;55395;55396;55397 35237;35238;35239;35240;35241;35242;35243;35244;35245;35246 35241 10 TIGISVDPR Unmodified 956.5291 0.52909508 357 Q6NZ55;A8K4C8;P26373;J3QSB4 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.407 45.597 2 0.0033449 16384 20181213_JW_Orientia_Karp_1_1 112.11 44.938 96276000 40489000 33302000 20518000 0 845690 1121500 0 0 9129 357 7807 55398;55399;55400;55401;55402 35247;35248;35249 35247 3 TIGTGLVTNTLAMTEEEK Unmodified 1906.9558 0.95575851 1683 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 61.225 61.499 2 0.00039285 26238 20181213_JW_Orientia_Karp_1_2 127.03 85.916 44906000 11669000 9628300 13806000 0 0 0 9802400 0 9130 1683 7808 55403;55404;55405;55406 35250 35250 1 TIHYDVYGK Unmodified 1094.5397 0.53965977 1225 Karp_00892 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 32.701 33.022 3 0.0016045 8849 20181213_JW_Orientia_Karp_2_3 115.71 75.656 139490000 59495000 22254000 36933000 10921000 4525300 1665300 3691700 0 9131 1225 7809 55407;55408;55409;55410;55411;55412;55413 35251;35252;35253;35254;35255;35256 35255 6 TIIAILENYQNSDGSVTIPEK Unmodified 2304.1849 0.18490682 1364 Karp_01859 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 70.465 70.576 2;3 0.0015217 25458 20181213_JW_Orientia_Karp_3_1 103.14 74.497 50626000 18283000 0 7365100 1021200 6381000 5349400 12227000 0 9132 1364 7810 55414;55415;55416;55417;55418;55419;55420;55421;55422 35257;35258;35259;35260;35261;35262;35263;35264;35265 35264 9 TIIAILENYQNSDGSVTIPEK Deamidation (NQ) 2305.1689 0.16892241 1364 Karp_01859 yes yes 0 1 0 0 By matching By MS/MS By matching 1 1 1 71.852 71.934 2 0.00061003 32850 20181213_JW_Orientia_Karp_1_2 144.4 92.529 20669000 7280800 7010300 6378100 0 0 0 0 0 9133 1364 7810 55423;55424;55425 35266 35266 825;1845 1 TIIQNPTDQQK Unmodified 1284.6674 0.66737948 217 A8K6Y1;Q6PIN5;A0A024RB85;Q05D08;Q9UQ80;F8VR77 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 1 34.689 35.068 2 0.00015713 10819 20181213_JW_Orientia_Karp_1_1 157.78 81.556 30353000 7243200 5127000 9213100 2734600 2118000 808450 2326600 781720 9134 217 7811 55426;55427;55428;55429;55430;55431;55432;55433;55434 35267;35268;35269;35270;35271 35267 5 TIISYIDEQFER Unmodified 1512.746 0.74602373 704 B5MCX3;Q15019;Q15019-3;Q15019-2;C9J2Q4;H7C310;C9IY94;C9IZU3;C9JQJ4;C9J938;C9JB25 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 65.125 65.308 2 0.0057165 28967 20181213_JW_Orientia_Karp_1_1 117.25 72.27 14664000 6616900 0 5966200 0 0 0 2081300 0 9135 704 7812 55435;55436;55437 35272 35272 1 TIIVSVER Unmodified 915.53893 0.53893149 1233 Karp_00900 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.306 42.626 2 0.0079441 13627 20181213_JW_Orientia_Karp_3_1 110.41 43.979 534380000 205690000 137770000 77528000 11905000 19266000 24556000 55724000 1938300 9136 1233 7813 55438;55439;55440;55441;55442;55443;55444;55445 35273;35274;35275;35276;35277;35278;35279 35278 7 TILPAAAQDVYYR Unmodified 1479.7722 0.7721789 1554 Q6IBR0;Q53EP4;P04843;Q96HX3;B4DL99;B4DNJ5;B7Z4L4 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 54.943 55.375 2 0.04288 22773 20181213_JW_Orientia_Karp_1_1 66.538 42.028 23642000 12995000 9297000 0 550180 0 0 357220 442660 9137 1554 7814 55446;55447;55448;55449;55450 35280 35280 1 TILQVVPSLVNVGVER Unmodified 1722.004 0.003969751 1342 Karp_01516 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.206 72.3 2 5.8536E-09 29153 20181213_JW_Orientia_Karp_3_2 183.96 155 163500000 43096000 29766000 28401000 10033000 13696000 7535900 22355000 8616300 9138 1342 7815 55451;55452;55453;55454;55455;55456;55457;55458 35281;35282;35283;35284;35285;35286;35287 35287 7 TILSNQTVDIPENVDITLK Unmodified 2112.1314 0.13141469 847 D6RAN4;Q53Z07;P32969;B4E1M5;E7ESE0;B4DLV8 RPL9 60S ribosomal protein L9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 67.703 67.913 2 4.118E-05 29945 20181213_JW_Orientia_Karp_1_3 143.05 110.76 34813000 12749000 9095300 7466000 0 0 1229300 2447200 1826700 9139 847 7816 55459;55460;55461;55462;55463;55464 35288;35289;35290;35291;35292 35291 5 TILVQVWDK Unmodified 1100.623 0.62299547 1456 Karp_02593 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 56.631 57.231 2 0.0035642 21567 20181213_JW_Orientia_Karp_2_1 111.06 51.815 13083000 0 0 0 4675200 0 0 8408100 0 9140 1456 7817 55465;55466 35293;35294 35293 2 TINEVENQILTR Unmodified 1428.7573 0.75725712 1509;133 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;A1L0V1;H7C5W8;H0YJW3;H0YJ11;Q5ZEZ4 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 2 2 49.712 50.029 2 5.7339E-65 18742 20181213_JW_Orientia_Karp_1_2 298.84 181.03 500130000 102620000 140050000 158570000 29859000 21135000 28650000 0 19244000 9141 1509;133 7818 55467;55468;55469;55470;55471;55472;55473;55474;55475;55476 35295;35296;35297;35298;35299 35296 5 TINNQHLGESSTMLTGDENIVELNCNVR Oxidation (M) 3173.4717 0.4717395 1105 Karp_00283 yes yes 0 0 1 0 By MS/MS By matching By matching 1 1 1 52.17 52.57 3 0.00033026 20592 20181213_JW_Orientia_Karp_1_2 87.952 60.855 10333000 0 5296600 4125000 0 0 0 911560 0 9142 1105 7819 55477;55478;55479 35300 35300 624 1 TIPSWATLSASQLAR Unmodified 1600.8573 0.85730551 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;B0QZK4;Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 63.026 63.353 2 4.6874E-05 27030 20181213_JW_Orientia_Karp_1_3 158.01 51.612 79341000 33831000 17789000 21962000 1403000 0 0 179600 4176400 9143 1846 7820 55480;55481;55482;55483;55484;55485 35301;35302;35303;35304 35304 4 TIQEMQQK Oxidation (M) 1020.491 0.49099502 1509 O43707;O43707-2;Q96BG6;B4DSX0;K7EJH8 ACTN4 Alpha-actinin-4 yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 15.032 15.281 2 0.012444 2413 20181213_JW_Orientia_Karp_1_3 95.815 25.29 2921200 880320 0 1156900 333670 0 0 550330 0 9144 1509 7821 55486;55487;55488;55489 35305;35306;35307 35306 1119 3 TIQFVDWCPTGFK Unmodified 1597.7599 0.75989966 1887 Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;Q13748-2;Q6PEY2;Q8N532;C9J2C0;Q9NY65-2;Q9NY65;Q7Z3M3;V9GZ17 TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA3E;TUBA8;DKFZp686L04275 Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.738 67.939 2 3.4986E-05 23933 20181213_JW_Orientia_Karp_3_1 173.76 117.55 97329000 23973000 18635000 18446000 0 9131300 3078800 14029000 10037000 9145 1887 7822 55490;55491;55492;55493;55494;55495;55496 35308;35309;35310;35311 35310 4 TISGVSGTTK Unmodified 949.50803 0.50802529 1241 Karp_00908 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 23.543 23.869 2 0.0038343 5152 20181213_JW_Orientia_Karp_3_1 106.18 47.745 42390000 0 20798000 4384600 5111800 4375300 2460200 5260700 0 9146 1241 7823 55497;55498;55499;55500;55501;55502 35312;35313;35314;35315 35315 4 TISTNYQNIENVIR Unmodified 1663.8529 0.85294842 1269 Karp_01077 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.645 55.003 2 2.9625E-05 22076 20181213_JW_Orientia_Karp_1_2 168.83 109.68 165760000 33093000 33251000 68472000 7983700 10547000 9783200 394810 2235400 9147 1269 7824 55503;55504;55505;55506;55507;55508;55509;55510 35316;35317;35318 35317 3 TITELYK Unmodified 866.47493 0.47493425 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.74 39.047 2 0.023111 12455 20181213_JW_Orientia_Karp_1_2 98.418 20.677 66186000 18809000 24357000 7491000 4382700 3081900 3847500 4216500 0 9148 1058 7825 55511;55512;55513;55514;55515;55516;55517 35319;35320;35321;35322;35323;35324;35325;35326 35320 8 TITLEVEPSDTIENVK Unmodified 1786.92 0.92002493 1841 Q59EM9;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;Q5RKT7;B2RDW1;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q9UFQ0;Q96C32;Q96MH4;L8B4I8;L8B196;Q96H31;L8B4R0;F5H041;A8K674;L8B4Z6;L8B4M0;L8B4J3;Q66K58;P62987;P62979;P0CG47;P0CG48;M0R1V7;Q49A90;J3QLP7;J3QRK5;J3QSA3;F5GZ39 UBB;RPS27A;UBC;UBA52;HEL112;DKFZp434K0435;UbC;UBBP4 Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.181 58.468 2 2.6231E-63 22222 20181213_JW_Orientia_Karp_2_1 328.26 225.73 4948800000 1700300000 1264500000 1123600000 183310000 213570000 208610000 0 254850000 9149 1841 7826 55518;55519;55520;55521;55522;55523;55524 35327;35328;35329;35330;35331;35332;35333;35334 35330 8 TITLEVEPSDTIENVK Deamidation (NQ) 1787.904 0.90404051 1841 Q59EM9;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;Q5RKT7;B2RDW1;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q9UFQ0;Q96C32;Q96MH4;L8B4I8;L8B196;Q96H31;L8B4R0;F5H041;A8K674;L8B4Z6;L8B4M0;L8B4J3;Q66K58;P62987;P62979;P0CG47;P0CG48;M0R1V7;Q49A90;J3QLP7;J3QRK5;J3QSA3;F5GZ39 UBB;RPS27A;UBC;UBA52;HEL112;DKFZp434K0435;UbC;UBBP4 Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 1 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 59.831 60.124 2 0.00047542 25364 20181213_JW_Orientia_Karp_1_2 142.76 88.566 88407000 36765000 19834000 19126000 3908400 3070000 3755100 1949300 0 9150 1841 7826 55525;55526;55527;55528;55529;55530;55531 35335 35335 1172 1 TIVIGQATQLQK Unmodified 1298.7558 0.75580056 1203 Karp_00824 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.323 45.643 2 0.00075838 15059 20181213_JW_Orientia_Karp_3_1 149.94 86.868 57960000 14030000 15602000 19286000 2392400 1406400 2297800 1005000 1941700 9151 1203 7827 55532;55533;55534;55535;55536;55537;55538;55539 35336;35337;35338;35339 35338 4 TIVQLENEIYQIK Unmodified 1589.8665 0.86647322 468 B2R7W3;O75934 BCAS2 Pre-mRNA-splicing factor SPF27 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 62.664 62.884 2 1.3095E-11 24301 20181213_JW_Orientia_Karp_2_2 205.56 131.72 38298000 9649500 11762000 0 1521000 8327600 7038200 0 0 9152 468 7828 55540;55541;55542;55543;55544 35340;35341;35342;35343 35341 4 TIVTTLQDSIR Unmodified 1245.6929 0.69286595 186 A0A024R9Q1;P07996;P07996-2;A0PJG0;CON__Q28194 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.935 53.281 2 2.4031E-09 18671 20181213_JW_Orientia_Karp_3_1 203.02 72.612 934580000 205540000 319090000 154270000 78565000 75202000 65384000 30037000 6489500 + 9153 186 7829 55545;55546;55547;55548;55549;55550;55551;55552 35344;35345;35346;35347;35348;35349;35350 35350 7 TIYESAITR Unmodified 1052.5502 0.55022446 1310 Karp_01252 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 39.443 39.75 2 0.00079097 12057 20181213_JW_Orientia_Karp_2_1 143.37 102.15 1353100000 404520000 353400000 249560000 93868000 111620000 6667700 133460000 0 9154 1310 7830 55553;55554;55555;55556;55557;55558;55559;55560 35351;35352;35353;35354;35355;35356;35357 35354 7 TKDGVVEITGK Unmodified 1145.6292 0.62920306 1553 V9HW43;P04792;B4DL87 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 28.785 29.126 2 0.014756 7050 20181213_JW_Orientia_Karp_3_1 145.28 96.215 6978800 2421000 0 0 1406000 708570 742490 1700700 0 9155 1553 7831 55561;55562;55563;55564;55565 35358;35359 35359 2 TKDQGEYETFWNNFGAVLK Unmodified 2246.0644 0.064397756 1251 Karp_00928 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 67.522 67.724 3 0.00013764 23802 20181213_JW_Orientia_Karp_3_1 132.5 92.223 45746000 6899800 5122900 4963800 0 8361800 8466500 7357700 4574000 9156 1251 7832 55566;55567;55568;55569;55570;55571;55572 35360 35360 1 TKPYIQVDIGGGQTK Unmodified 1603.857 0.85697116 1585 V9HWB4;P11021;B4DEF7 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 41.396 41.713 3 0.037483 13709 20181213_JW_Orientia_Karp_1_3 99.344 67.069 117250000 28276000 38959000 24084000 6698200 0 3674800 15562000 0 9157 1585 7833 55573;55574;55575;55576;55577;55578 35361 35361 1 TKQIQNMEQKGK 4 Deamidation (NQ) 1435.6865 0.68645994 702 B5MCA1;Q96G28;Q96G28-2 CFAP36 Cilia- and flagella-associated protein 36 yes no 0 4 0 2 By MS/MS 1 62.639 62.837 3 0.039311 26706 20181213_JW_Orientia_Karp_1_3 48.004 22.09 0 0 0 0 0 0 0 0 0 9158 702 7834 55579 35362 35362 1592;1593;1594 1 TKTETITGFQVDAVPANGQTPIQR Deamidation (NQ) 2572.3133 0.31329523 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 54.142 54.423 3 0.0048928 21711 20181213_JW_Orientia_Karp_1_2 90.592 64.24 94503000 13977000 48942000 0 13966000 11405000 6213500 0 0 9159 85 7835 55580;55581;55582;55583;55584 35363 35363 46 1 TKYEHELALR Unmodified 1258.667 0.66698555 795 CON__P08779;P08779 KRT16 Keratin, type I cytoskeletal 16 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 27.558 27.916 3 0.0020556 5887 20181213_JW_Orientia_Karp_3_2 115.57 52.5 74883000 18285000 9840600 17759000 3603400 2849400 2719900 13087000 6738500 + 9160 795 7836 55585;55586;55587;55588;55589;55590;55591;55592 35364;35365;35366;35367;35368;35369;35370;35371;35372 35372 9 TLAEENQELEQNK Deamidation (NQ) 1545.7158 0.71584581 1125 Karp_00328 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 34.162 34.505 2 1.2398E-05 10366 20181213_JW_Orientia_Karp_1_1 188.27 86.208 39777000 13401000 11664000 0 3330900 2674300 1639500 7067700 0 9161 1125 7837 55593;55594;55595;55596;55597;55598 35373 35373 1808 1 TLAEENQELEQNK Unmodified 1544.7318 0.73183023 1125 Karp_00328 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 33.916 34.279 2 2.2872E-35 9715 20181213_JW_Orientia_Karp_3_1 255.52 151.47 19404000 0 7900400 7806000 0 1367100 0 2330500 0 9162 1125 7837 55599;55600;55601;55602;55603 35374;35375;35376 35376 3 TLAESALQLLYTAK Unmodified 1520.845 0.84500949 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 71.774 71.852 2 6.6857E-12 32836 20181213_JW_Orientia_Karp_1_2 226.42 169.27 82472000 25406000 17547000 19818000 1985600 3096800 2102500 12517000 0 9163 2016 7838 55604;55605;55606;55607;55608;55609;55610 35377;35378;35379;35380 35378 4 TLAPTWEELSK Unmodified 1273.6554 0.65541781 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.105 54.427 2 2.4929E-05 21441 20181213_JW_Orientia_Karp_1_3 166.66 96.106 652400000 160420000 141590000 240430000 28394000 41696000 39794000 67623 0 9164 25 7839 55611;55612;55613;55614;55615;55616;55617 35381;35382;35383;35384;35385;35386 35383 6 TLCECAGGLECACPALLEYAR Unmodified 2413.0535 0.053457193 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 64.544 64.66 2 5.9143E-39 28561 20181213_JW_Orientia_Karp_1_1 240.46 171.01 37843000 11378000 15108000 11358000 0 0 0 0 0 9165 1466;1549 7840 55618;55619;55620 35387;35388 35387 2 TLDFDALSVGQR Unmodified 1320.6674 0.66737948 1795 Q6DEN2;Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 60.427 60.694 2 0.00085306 25781 20181213_JW_Orientia_Karp_1_2 158.79 54.589 25012000 0 8678300 12179000 0 0 4154100 0 0 9166 1795 7841 55621;55622;55623;55624 35389;35390;35391 35389 3 TLDLPIYVTR Unmodified 1189.6707 0.67067394 1704 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 63.232 63.496 2 0.0053037 27516 20181213_JW_Orientia_Karp_1_2 101.97 50.915 14328000 5034400 1782200 6780900 0 0 0 0 730070 9167 1704 7842 55625;55626;55627;55628 35392;35393;35394;35395 35393 4 TLEEAVGNIVK Unmodified 1171.6449 0.64485312 541 B3KW21;Q8WUI6;Q9Y678;H0Y8X7 COPG;COPG1 Coatomer subunit gamma-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 51.221 51.603 2 0.017233 19900 20181213_JW_Orientia_Karp_1_2 86.898 26.07 13607000 0 7475800 0 2240000 1477200 1891200 0 522940 9168 541 7843 55629;55630;55631;55632;55633 35396 35396 1 TLEEDEEELFK Unmodified 1380.6297 0.62965657 1672 P43487-2;P43487;C9JJ34;B7Z6U1;B4DE76;C9JDM3 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 55.072 55.429 2 1.0338E-12 20525 20181213_JW_Orientia_Karp_2_1 212.03 115.37 173210000 32626000 22632000 30317000 15604000 48138000 21313000 78635 2498900 9169 1672 7844 55634;55635;55636;55637;55638;55639;55640;55641 35397;35398;35399;35400;35401;35402;35403 35400 7 TLEFPINEFEK Unmodified 1365.6816 0.68163256 1345 Karp_01521 yes yes 0 0 0 0 By MS/MS 1 64.302 64.552 2 0.010383 28180 20181213_JW_Orientia_Karp_1_2 108.31 39.467 0 0 0 0 0 0 0 0 0 9170 1345 7845 55642 35404 35404 1 TLEGELHDLR Unmodified 1181.6041 0.60405094 1543;1544;1851 P02545;P02545-3;P02545-6;P02545-5;P02545-4;Q5I6Y5;Q8N519;H0YAB0;P02545-2;W8QEH3;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C no no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 39.986 40.286 2 0.00060187 13039 20181213_JW_Orientia_Karp_1_2 109.44 45.018 25140000 7172100 7596700 6119300 0 0 0 4251400 0 9171 1543;1544;1851 7846 55643;55644;55645;55646 35405 35405 1 TLENKNNLLEIEVNDLR 4 Deamidation (NQ) 2030.0055 0.005545473 976 H0YG46;J3KNE4;Q99550-2;Q99550 MPHOSPH9 M-phase phosphoprotein 9 yes no 0 4 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 37.543 37.877 4 0.018664 11387 20181213_JW_Orientia_Karp_3_1 60.246 10.651 482260000 67295000 103740000 183790000 479630 101690000 0 25270000 0 9172 976 7847 55647;55648;55649;55650;55651;55652 35406 35406 345;346;347;348 1 TLENLIPDTK Unmodified 1142.6183 0.61830402 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.885 53.218 2 0.0017683 19451 20181213_JW_Orientia_Karp_2_3 116.52 62.743 71376000 14173000 33316000 14377000 3839600 0 5014500 655920 0 9173 852 7848 55653;55654;55655;55656;55657;55658;55659 35407;35408;35409;35410;35411 35410 5 TLEQAGLLDR Unmodified 1114.5982 0.59823728 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.492 45.765 2 2.4139E-06 16032 20181213_JW_Orientia_Karp_1_2 178.54 91.709 639120000 187160000 218060000 133710000 47214000 18782000 30541000 0 3641600 9174 1449 7849 55660;55661;55662;55663;55664;55665;55666;55667 35412;35413;35414;35415;35416;35417;35418;35419 35413 8 TLEVEIEPGVR Unmodified 1240.6663 0.66631685 1997 Q9UBS4;H7C2Y5;B3KW63 DNAJB11 DnaJ homolog subfamily B member 11 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.615 51.96 2 0.0010764 20533 20181213_JW_Orientia_Karp_1_1 128.27 71.354 51388000 10189000 11584000 1841600 9470600 7910300 8547600 1154300 690810 9175 1997 7850 55668;55669;55670;55671;55672;55673;55674;55675 35420 35420 1 TLFPLIEAK Unmodified 1030.6063 0.60628277 1591 Q53T09;P13010 XRCC5 X-ray repair cross-complementing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 63.605 63.654 2 0.017186 27951 20181213_JW_Orientia_Karp_1_1 85.862 41.513 22082000 13334000 0 8747200 0 0 0 0 0 9176 1591 7851 55676;55677;55678 35421;35422 35421 2 TLFSNIVLSGGSTLFK Unmodified 1682.9243 0.92432245 601 R4GMT0;B4DM97;P61163;B4DXP9 ACTR1A Alpha-centractin no no 0 0 0 0 By MS/MS By matching By matching 1 1 1 73.145 73.231 2 0.004118 33806 20181213_JW_Orientia_Karp_1_1 129.17 107.18 44663000 35832000 7350400 0 0 0 0 0 1481000 9177 601 7852 55679;55680;55681 35423 35423 1 TLGELQAMINEHK Oxidation (M) 1498.745 0.74497787 1266 Karp_01074 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 39.982 40.342 2 0.00050806 13028 20181213_JW_Orientia_Karp_1_2 150.51 110.01 25079000 5064100 4460800 7517700 1862300 0 0 5191900 982460 9178 1266 7853 55682;55683;55684;55685;55686;55687 35424;35425;35426 35424 834 3 TLGELQAMINEHK Unmodified 1482.7501 0.75006325 1266 Karp_01074 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.426 49.745 3 0.034641 18595 20181213_JW_Orientia_Karp_1_2 52.265 13.466 112230000 38771000 39739000 0 17852000 6625100 8152000 0 1092300 9179 1266 7853 55688;55689;55690;55691;55692;55693 35427 35427 1 TLGILGLGR Unmodified 898.56 0.56000128 1505 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 59.055 59.237 2 0.0013667 25157 20181213_JW_Orientia_Karp_1_1 126.52 61.276 10596000 5408600 2432200 2755600 0 0 0 0 0 9180 1505 7854 55694;55695;55696 35428;35429 35428 2 TLGSQEQQVISSSELIAHIR Unmodified 2195.1546 0.15460975 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 57.472 57.817 3 7.6639E-06 24386 20181213_JW_Orientia_Karp_1_1 143.69 117.89 418370000 106870000 79256000 96160000 21674000 47138000 31417000 1599800 34255000 9181 1376 7855 55697;55698;55699;55700;55701;55702;55703;55704 35430;35431;35432;35433;35434;35435;35436 35430 7 TLHPDLGTDK Unmodified 1095.556 0.55603811 587 B4DJI1;V9HWB9;P00338-4;P00338;P00338-3;P00338-5;P00338-2 HEL-S-133P;LDHA L-lactate dehydrogenase;L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 29.104 29.708 3 0.013602 6738 20181213_JW_Orientia_Karp_2_2 73.841 30.758 1761600 0 0 0 0 660230 0 735100 366250 9182 587 7856 55705;55706;55707 35437 35437 1 TLHSTFQPNISQGK Unmodified 1556.7947 0.79470526 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-2;Q9NZM1-5 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 35.352 35.652 3 0.022087 11163 20181213_JW_Orientia_Karp_1_1 67.964 23.972 22420000 8243900 6878100 5144100 0 0 0 2153900 0 9183 1991 7857 55708;55709;55710;55711 35438 35438 1 TLIEFLLR Unmodified 1003.6066 0.60661712 1639 V9HW38;P28838-2;P28838;B4DQG5 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 72.016 72.091 2 0.0050304 33124 20181213_JW_Orientia_Karp_1_2 122.18 15.168 38828000 0 9909500 0 0 4256100 1796900 22865000 0 9184 1639 7858 55712;55713;55714;55715 35439;35440 35439 2 TLINAEDPPMVVVR Oxidation (M) 1568.8232 0.82322819 235 A4QPB0;A0A024RC65;P46940;Q6P1N4;H0YLE8;B4E2M0;Q96PA3 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 1 0 By MS/MS By matching 1 1 54.247 54.346 2 0.015972 22077 20181213_JW_Orientia_Karp_1_1 107.09 54.513 8608500 5094100 0 3514400 0 0 0 0 0 9185 235 7859 55716;55717 35441 35441 175 0 TLISLIQK Unmodified 914.58007 0.58006802 1364 Karp_01859 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 53.189 53.419 2 0.0166 19529 20181213_JW_Orientia_Karp_2_3 93.162 36.441 39632000 6108600 0 3746800 11741000 2991300 15044000 0 0 9186 1364 7860 55718;55719;55720;55721;55722 35442;35443 35443 2 TLLAELDLK Unmodified 1014.5961 0.59611202 1169 Karp_00623 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 60.68 60.967 2 0.02031 26017 20181213_JW_Orientia_Karp_1_2 83.948 24.703 65427000 17382000 11397000 8252500 857690 10857000 9239100 0 7441500 9187 1169 7861 55723;55724;55725;55726;55727;55728;55729 35444 35444 1 TLLDIDNTR Unmodified 1059.556 0.55603811 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 3 2 1 49.687 50.017 2 0.00024385 17176 20181213_JW_Orientia_Karp_2_2 175.91 96.462 2828900000 270350000 421270000 321690000 847950000 380350000 465920000 195800 121190000 + 9188 1653 7862 55730;55731;55732;55733;55734;55735;55736;55737;55738;55739;55740;55741;55742 35445;35446;35447;35448;35449;35450;35451;35452;35453;35454;35455 35450 11 TLLDIDNTR Deamidation (NQ) 1060.5401 0.5400537 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 52.641 52.949 2 0.022268 18729 20181213_JW_Orientia_Karp_2_1 94.309 37.58 129330000 37227000 22241000 9199000 23031000 12019000 24479000 1135000 0 + 9189 1653 7862 55743;55744;55745;55746;55747;55748;55749;55750 35456;35457 35457 1105 2 TLLEGEESR Unmodified 1032.5088 0.50875357 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 33.86 34.233 2 0.00024753 9919 20181213_JW_Orientia_Karp_1_3 167.23 34.471 736070000 247520000 182100000 98084000 69187000 29848000 0 71532000 37788000 + 9190 995;996 7863 55751;55752;55753;55754;55755;55756;55757 35458;35459;35460;35461;35462;35463 35460 6 TLLGDGPVVTDPK Unmodified 1310.7082 0.70818166 205 H0YGX7;A0A024RAS5;P52566;F5H2R5;F5H6Q0;F5H3P3;B2R4F3 ARHGDIB Rho GDP-dissociation inhibitor 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 51.213 51.546 2 0.0001779 19738 20181213_JW_Orientia_Karp_1_2 162.26 116.35 179170000 64138000 41323000 40158000 13110000 0 10986000 9453900 0 9191 205 7864 55758;55759;55760;55761;55762;55763 35464;35465;35466;35467;35468 35465 5 TLLQQNQQLK Unmodified 1212.6826 0.68263561 1778 Q08378-2;Q08378 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 36.261 36.561 2 0.034918 10710 20181213_JW_Orientia_Karp_3_1 75.043 18.61 10552000 2234500 1987300 4869900 0 0 0 1460200 0 9192 1778 7865 55764;55765;55766;55767 35469 35469 1 TLLSNLEEAK Unmodified 1116.6027 0.60265396 1584 P10909-4;P10909;P10909-5;P10909-2;E5RG36;E5RGB0;E5RH61;E5RJZ5;E7ERK6;E7ETB4;H0YLK8 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 49.121 49.43 2 0.0109 17075 20181213_JW_Orientia_Karp_2_2 99.013 49.477 58312000 1865500 17891000 14705000 10504000 8099100 0 0 5247500 9193 1584 7866 55768;55769;55770;55771;55772;55773 35470 35470 1 TLLWTELFR Unmodified 1177.6495 0.64954457 114 E9PN51;F8W9K7;E9PKH6;B4DYI3;A0A024R5K3;E9PPW7;Q53G17;O00217 NDUFS8 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 73.262 73.312 2 0.006374 33522 20181213_JW_Orientia_Karp_1_3 101.25 61.194 33197000 21534000 0 4818500 0 0 0 6844100 0 9194 114 7867 55774;55775;55776 35471;35472;35473 35472 3 TLMALGSLAVTK Oxidation (M) 1219.6846 0.68460945 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9;Q59FA5 TAGLN Transgelin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.429 52.774 2 6.4198E-12 19211 20181213_JW_Orientia_Karp_2_3 208.33 149.63 133350000 24994000 17123000 23289000 22237000 24882000 18041000 1586700 1192700 9195 1761 7868 55777;55778;55779;55780;55781;55782;55783;55784 35474;35475;35476;35477;35478;35479;35480;35481 35479 1379 8 TLMALGSLAVTK Unmodified 1203.6897 0.68969482 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9;Q59FA5 TAGLN Transgelin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.689 59.95 2 2.2458E-16 23087 20181213_JW_Orientia_Karp_2_3 211.86 154.27 48558000 19824000 9496100 0 730820 11431000 7075400 0 0 9196 1761 7868 55785;55786;55787;55788;55789;55790;55791 35482;35483;35484;35485;35486;35487;35488;35489 35488 8 TLMNLGGLAVAR Oxidation (M) 1230.6754 0.67544174 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 50.848 51.25 2 2.058E-40 17309 20181213_JW_Orientia_Karp_3_1 265.67 182.92 1494100000 183120000 172380000 122520000 291160000 159300000 261170000 268880000 35558000 9197 1662 7869 55792;55793;55794;55795;55796;55797;55798;55799;55800;55801 35490;35491;35492;35493;35494;35495;35496;35497;35498;35499 35497 1289 10 TLMNLGGLAVAR Oxidation (M);Deamidation (NQ) 1231.6595 0.65945733 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 1 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 57.651 57.913 2 0.0034427 21798 20181213_JW_Orientia_Karp_2_2 118.23 78.175 28159000 0 9998800 5897600 0 6541100 5721100 0 0 9198 1662 7869 55802;55803;55804;55805 35500;35501;35502 35501 1113 1289 2 TLMNLGGLAVAR Deamidation (NQ) 1215.6645 0.66454271 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 1 0 0 By MS/MS 1 63.466 63.564 2 0.011043 27255 20181213_JW_Orientia_Karp_1_3 110.54 54.991 0 0 0 0 0 0 0 0 0 9199 1662 7869 55806 35503 35503 1113 1 TLNAEGWLAR Unmodified 1129.588 0.58800695 1113 Karp_00296 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.627 51.972 2 2.9209E-12 20080 20181213_JW_Orientia_Karp_1_2 217.66 127.91 364670000 79495000 78493000 70036000 54831000 27163000 42300000 9142600 3212600 9200 1113 7870 55807;55808;55809;55810;55811;55812;55813;55814 35504;35505;35506;35507;35508;35509;35510;35511 35505 8 TLNDELEIIEGMK Oxidation (M) 1519.744 0.74397482 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;Q53SE2;E7ESH4;B7Z532;E7EXB4 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 60.8 61.102 2 1.128E-25 26350 20181213_JW_Orientia_Karp_1_1 239.48 176.29 119090000 36518000 30665000 17973000 0 14643000 9600700 1595200 8096200 9201 81 7871 55815;55816;55817;55818;55819;55820;55821 35512;35513;35514 35512 92 3 TLNDELEIIEGMK Unmodified 1503.7491 0.7490602 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;Q53SE2;E7ESH4;B7Z532;E7EXB4 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 67.607 67.809 2 2.1031E-45 30342 20181213_JW_Orientia_Karp_1_1 259.75 192.42 80734000 39463000 0 14246000 1798100 9269800 2849900 8121100 4986200 9202 81 7871 55822;55823;55824;55825;55826;55827;55828;55829 35515;35516;35517;35518;35519 35515 5 TLNDMRQEYEQLIAK Oxidation (M) 1866.9146 0.9145624 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 45.826 46.098 3 4.085E-06 15072 20181213_JW_Orientia_Karp_2_2 177.93 132.71 282650000 31486000 38990000 52163000 15360000 36191000 42022000 0 66441000 + 9203 1653 7872 55830;55831;55832;55833;55834;55835;55836;55837 35520;35521;35522;35523 35522 1277 4 TLNDMRQEYEQLIAK Unmodified 1850.9196 0.91964777 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 54.725 54.992 3 0.016153 21758 20181213_JW_Orientia_Karp_1_3 88.78 61.509 101290000 18295000 31468000 25871000 10655000 5084000 9918900 0 0 + 9204 1653 7872 55838;55839;55840;55841;55842;55843 35524;35525 35524 2 TLNNDIMLIK Oxidation (M);Deamidation (NQ) 1190.6217 0.62167484 278;794 Q86W20;A1A508;Q86W19;Q86W18;A6XGL3;Q86W17;Q53ZX9;Q53ZX8;Q53ZX7;Q45KI0;H0Y8D1;CON__P07477;E7EQ64;P07477 PRSS1;PRSS3 Trypsin-1;Alpha-trypsin chain 1;Alpha-trypsin chain 2 no no 0 1 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.037 53.287 2 0.001603 19530 20181213_JW_Orientia_Karp_2_3 121.6 58.184 141190000 37154000 24737000 7372800 20066000 18313000 33551000 0 0 + 9205 278;794 7873 55844;55845;55846;55847;55848;55849 35526;35527;35528;35529;35530 35529 108 199 5 TLNNDIMLIK Deamidation (NQ) 1174.6268 0.62676022 278;794 Q86W20;A1A508;Q86W19;Q86W18;A6XGL3;Q86W17;Q53ZX9;Q53ZX8;Q53ZX7;Q45KI0;H0Y8D1;CON__P07477;E7EQ64;P07477 PRSS1;PRSS3 Trypsin-1;Alpha-trypsin chain 1;Alpha-trypsin chain 2 no no 0 1 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 58.63 58.913 2 0.011977 22613 20181213_JW_Orientia_Karp_2_3 99.688 41.829 52718000 14816000 0 15161000 7036600 6413300 8884000 406820 0 + 9206 278;794 7873 55850;55851;55852;55853;55854;55855 35531;35532 35532 108 2 TLNNQFASFIDK Unmodified 1396.6987 0.69867961 818 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 KRT78 Keratin, type II cytoskeletal 78 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 56.947 57.279 2 0.02432 21589 20181213_JW_Orientia_Karp_2_2 83.226 48.423 21601000 0 8829400 4786800 0 2585400 3882600 0 1516400 + 9207 818 7874 55856;55857;55858;55859;55860 35533;35534 35533 2 TLNQLGTPQDSPELR Unmodified 1667.8479 0.84786304 574 B4DH37;O15400-2;O15400 STX7 Syntaxin-7 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.374 47.719 2 0.0010775 17267 20181213_JW_Orientia_Karp_1_2 160.86 81.655 67424000 11402000 15676000 17797000 5014700 3583800 3425900 1067500 9457400 9208 574 7875 55861;55862;55863;55864;55865;55866;55867;55868 35535;35536 35536 2 TLPAIGFAAGIER Unmodified 1314.7296 0.7295858 1179 Karp_00654 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 2 62.462 62.705 2 0.0083913 24193 20181213_JW_Orientia_Karp_2_2 116.74 71.715 38587000 8874400 7687500 12089000 0 3122600 2240200 0 4574100 9209 1179 7876 55869;55870;55871;55872;55873;55874;55875 35537;35538;35539;35540 35539 4 TLQALQIPAAK Unmodified 1152.6867 0.68665836 235 A4QPB0;A0A024RC65;P46940;Q6P1N4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.549 50.894 2 0.00015771 19782 20181213_JW_Orientia_Karp_1_1 157.75 109.65 67307000 16173000 21732000 13725000 7773000 2801400 3700700 805730 596760 9210 235 7877 55876;55877;55878;55879;55880;55881;55882;55883 35541;35542;35543;35544;35545;35546 35541 5 TLQEQLENGPNTQLAR Deamidation (NQ) 1811.9014 0.90135517 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5 RRBP1 Ribosome-binding protein 1 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 47.933 48.183 2 2.0282E-113 17337 20181213_JW_Orientia_Karp_1_1 317.99 240.93 78737000 21625000 24151000 32926000 0 0 0 35881 0 9211 279 7878 55884;55885;55886;55887;55888;55889;55890 35547;35548;35549;35550 35547 109 4 TLQEVTQLSQEAQR Unmodified 1629.8322 0.83221298 885 E9KL44;P40939;B4DRH6;P40939-2 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 46.33 46.63 2 0.0022156 16370 20181213_JW_Orientia_Karp_1_3 144.51 101.88 31579000 12245000 7482600 11290000 0 0 0 560740 0 9212 885 7879 55891;55892;55893;55894 35551;35552 35552 2 TLRPALVGVVK Unmodified 1151.739 0.73902828 652 B4DWV5;Q9HAV7 GRPEL1 GrpE protein homolog;GrpE protein homolog 1, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS By matching 1 2 1 41.793 41.96 3 0.001656 14496 20181213_JW_Orientia_Karp_1_1 145.46 127.98 52721000 28309000 23639000 0 0 772340 0 0 0 9213 652 7880 55895;55896;55897;55898 35553;35554 35553 2 TLSDYNIQK Unmodified 1080.5451 0.54513908 1841 Q59EM9;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;Q5RKT7;B2RDW1;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q9UFQ0;Q96C32;Q96MH4;L8B4I8;L8B196;Q96H31;L8B4R0;F5H041;A8K674;L8B4Z6;L8B4M0;L8B4J3;Q66K58;P62987;P62979;P0CG47;P0CG48;M0R1V7;Q49A90;M0R1M6;Q8WYN9;M0R2S1 UBB;RPS27A;UBC;UBA52;HEL112;DKFZp434K0435;UbC Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.773 37.056 2 8.6525E-05 10954 20181213_JW_Orientia_Karp_2_3 190.26 90.887 2366100000 1013200000 555000000 506040000 0 52203000 33142000 206460000 0 9214 1841 7881 55899;55900;55901;55902;55903;55904 35555;35556;35557;35558;35559;35560 35559 6 TLSSPSNRPSGETSVPPPPAVGR Unmodified 2289.1713 0.17132244 1923 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;A0A024QZC0;A0A024QZB7;A0A024QZ91 ATXN2L Ataxin-2-like protein yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 40.252 40.553 3 0.019856 13676 20181213_JW_Orientia_Karp_1_1 66.636 35.87 58487000 18197000 13820000 11329000 0 1168000 1571700 11616000 785660 9215 1923 7882 55905;55906;55907;55908;55909;55910;55911 35561;35562 35561 2 TLTAAAVSGAQPILSK Unmodified 1526.8668 0.86680757 1515 O60664-4;O60664-3;O60664;K7EL96;K7ER39 PLIN3 Perilipin-3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.766 52.111 2 6.4078E-09 20075 20181213_JW_Orientia_Karp_1_3 182.89 130.72 71922000 18925000 12893000 20246000 4390700 3386500 2669800 7728100 1683000 9216 1515 7883 55912;55913;55914;55915;55916;55917;55918;55919 35563;35564;35565;35566;35567 35565 5 TLTELILDAQEHVK Unmodified 1608.8723 0.87228688 397 B4DNQ1;E9PKP7;A8K962;P17480-2;P17480;Q05BZ1;Q9BQR2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 59.399 59.639 3 0.0070568 24791 20181213_JW_Orientia_Karp_1_3 86.288 41.075 49856000 33909000 0 12365000 0 2917600 0 0 664730 9217 397 7884 55920;55921;55922;55923 35568;35569 35569 2 TLTGSFSIK Unmodified 952.52295 0.52294707 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 45.58 45.814 2 0.01833 16495 20181213_JW_Orientia_Karp_1_1 85.161 37.245 131830000 32069000 42499000 47911000 3800900 4877600 671690 0 0 9218 1133 7885 55924;55925;55926;55927;55928;55929 35570;35571 35570 2 TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK Unmodified 3057.5693 0.56925192 201 A0A024RAI1;P61158;B4DXW1;B4DT29;B4DTI0 ACTR3 Actin-related protein 3 yes no 0 0 0 0 By MS/MS By matching 1 1 70.494 70.594 3 0.00029774 32048 20181213_JW_Orientia_Karp_1_2 71.524 2.9585 10019000 0 8293200 0 0 0 1725900 0 0 9219 201 7886 55930;55931 35572 35572 1 TLTLVDTGIGMTK Unmodified 1348.7272 0.72720254 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;O14942 HSP90AB1 Heat shock protein HSP 90-beta yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 58.76 59.08 2 5.5699E-17 24768 20181213_JW_Orientia_Karp_1_2 211.37 0 170470000 51822000 53407000 50883000 2352200 4388200 4920100 896030 1805800 9220 251 7887 55932;55933;55934;55935;55936;55937;55938;55939 35573;35574;35575;35576;35577 35573 5 TLTPGGHAEHDGQPYCHK Unmodified 2003.8908 0.89080726 975 H0YFA4;Q53FN1;P52943;P52943-2;H0YHD8 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 0 By MS/MS 1 20.865 21.776 3 0.034015 3373 20181213_JW_Orientia_Karp_3_2 48.423 30.506 1125800 0 0 0 0 0 0 0 1125800 9221 975 7888 55940 35578 35578 1 TLTTVQGIADDYDK Unmodified 1538.7464 0.74641766 1055 Q6IAV3;K7EM18;P41567;Q6FG85;Q53F41;O60739 SUI1;EIF1;GC20;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.306 50.651 2 5.9639E-12 19174 20181213_JW_Orientia_Karp_1_2 205.31 159.71 144190000 31123000 22967000 25754000 21318000 16430000 12503000 9637800 4453800 9222 1055 7889 55941;55942;55943;55944;55945;55946;55947;55948 35579;35580;35581;35582;35583;35584;35585;35586 35580 8 TLVLLDNLNVR Unmodified 1268.7452 0.74523587 198 A0A024RAD5;P39656-2;P39656-3;P39656;U3KQ84 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By matching By MS/MS 1 1 64.755 64.804 2 0.00010258 27970 20181213_JW_Orientia_Karp_1_3 160.75 96.457 11384000 5371900 0 6012300 0 0 0 0 0 9223 198 7890 55949;55950 35587 35587 1 TLVLLMGK Oxidation (M) 889.53067 0.53067499 1567 P07737;K7EJ44;CON__P02584 PFN1 Profilin-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 47.93 48.18 2 0.0072135 16417 20181213_JW_Orientia_Karp_2_1 108.09 62.136 201650000 17613000 39968000 18507000 37859000 14738000 72967000 0 0 9224 1567 7891 55951;55952;55953;55954;55955;55956 35588;35589;35590;35591;35592;35593 35591 1186 6 TLVLLMGK Unmodified 873.53576 0.53576037 1567 P07737;K7EJ44;CON__P02584 PFN1 Profilin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 55.856 56.197 2 0.00419 22487 20181213_JW_Orientia_Karp_1_3 140.98 140.98 79908000 0 3925900 16079000 0 13565000 32741000 13597000 0 9225 1567 7891 55957;55958;55959;55960;55961;55962;55963;55964 35594;35595;35596;35597;35598;35599;35600 35596 7 TLVSISNPVITNNEK Unmodified 1627.8781 0.87810054 1129 Karp_00368 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.712 54.027 2 1.2241E-07 21455 20181213_JW_Orientia_Karp_1_2 179.83 121.59 97016000 44390000 14613000 20887000 6673400 4930300 4929800 0 592300 9226 1129 7892 55965;55966;55967;55968;55969;55970;55971 35601;35602;35603 35602 3 TLVSISNPVITNNEK Deamidation (NQ) 1628.8621 0.86211612 1129 Karp_00368 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 56.9 57.2 2 0.001988 23245 20181213_JW_Orientia_Karp_1_3 132.14 73.444 29542000 12059000 0 6877800 2574100 4115200 2416800 1498600 0 9227 1129 7892 55972;55973;55974;55975;55976;55977;55978 35604;35605;35606;35607 35605 522;523 4 TLVSTVGSMVFNEGEAQR Unmodified 1923.936 0.93602612 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 63.998 64.268 3 1.0903E-09 28051 20181213_JW_Orientia_Karp_1_2 175.7 134.34 10391000 0 5663300 0 0 4218200 0 0 509580 9228 279 7893 55979;55980;55981;55982 35608;35609;35610 35609 3 TLYGFGG Unmodified 713.33844 0.33844077 447 B2R4R0;P62805;Q0VAS5 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 1 1 2 60.483 60.75 1 0.017973 22609 20181213_JW_Orientia_Karp_2_3 103.41 103.41 14230000000 4053600000 4165000000 5080500000 0 368240000 257510000 305210000 0 9229 447 7894 55983;55984;55985;55986;55987;55988;55989;55990;55991 35611;35612;35613;35614 35614 2 TMATSYFNPK Oxidation (M) 1174.5329 0.53285983 1430 Karp_02387 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.274 37.607 2 0.00020061 11178 20181213_JW_Orientia_Karp_3_1 143.7 80.284 47685000 14036000 9497800 12042000 3490700 4530300 0 4087900 0 9230 1430 7895 55992;55993;55994;55995;55996;55997 35615;35616;35617;35618;35619 35619 1038 5 TMLALVK Unmodified 774.46735 0.46734645 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS 1 47.269 47.269 2 0.039681 17345 20181213_JW_Orientia_Karp_1_1 92.191 40.288 0 0 0 0 0 0 0 0 0 9231 1449 7896 55998 35620 35620 1 TMLALVK Oxidation (M) 790.46226 0.46226107 1449 Karp_02529 yes yes 0 0 1 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 38.693 38.955 2 0.021962 11868 20181213_JW_Orientia_Karp_2_3 94.163 49.19 16032000 6713100 5876700 2715700 0 0 456670 0 270120 9232 1449 7896 55999;56000;56001;56002;56003 35621 35621 1057 1 TMLESAGGLIQTAR Oxidation (M) 1462.745 0.74497787 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 47.289 47.638 2 0.00097717 17482 20181213_JW_Orientia_Karp_1_1 133.32 90.013 35955000 9757500 13847000 10304000 1244400 0 0 801420 0 9233 2016 7897 56004;56005;56006;56007;56008 35622;35623;35624 35622 1546 3 TMLESAGGLIQTAR Unmodified 1446.7501 0.75006325 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By matching 1 1 53.817 54.122 2 0.0084362 22056 20181213_JW_Orientia_Karp_1_1 119.21 19.176 96566000 90956000 0 0 0 0 0 0 5610300 9234 2016 7897 56009;56010 35625 35625 1 TMLITHMQDLQEVTQDLHYENFR Oxidation (M) 2877.3426 0.34256323 704 B5MCX3;Q15019;Q15019-3;Q15019-2 SEPT2 Septin-2 yes no 0 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 60.897 61.185 4 0.019438 26222 20181213_JW_Orientia_Karp_1_2 54.457 30.06 26335000 11729000 8050400 0 0 6318700 0 237070 0 9235 704 7898 56011;56012;56013;56014 35626 35626 424 1 TMNISEVQR Unmodified 1076.5284 0.52844316 1063 Karp_00007 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 35.753 36.115 2 0.029832 10951 20181213_JW_Orientia_Karp_1_2 78.113 30.197 87960000 27221000 28364000 20406000 0 0 0 10467000 1501600 9236 1063 7899 56015;56016;56017;56018;56019 35627 35627 1 TMQNLEIELQSQLSMK 2 Oxidation (M) 1923.9282 0.92816355 790 CON__P02533;P02533;A0A024R1X6 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 2 0 By MS/MS By MS/MS By matching 1 1 1 56.397 56.768 3 5.4196E-10 21290 20181213_JW_Orientia_Karp_2_3 193.31 144.77 19054000 0 0 0 0 10654000 8135200 0 264470 + 9237 790 7900 56020;56021;56022 35628;35629 35629 453;454 2 TMQNLEIELQSQLSMK Oxidation (M) 1907.9332 0.93324893 790 CON__P02533;P02533;A0A024R1X6 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 1 0 By MS/MS By MS/MS 1 1 61.522 61.903 3 4.6607E-09 23897 20181213_JW_Orientia_Karp_2_2 183.75 141.37 6753400 0 0 0 0 5680700 0 0 1072800 + 9238 790 7900 56023;56024 35630;35631 35630 453;454 1 TMQYVDMIK 2 Oxidation (M) 1159.5253 0.52533161 1296 Karp_01187 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 3 5 1 5 3 37.477 37.813 2 0.00027402 10196 20181213_JW_Orientia_Karp_3_1 159.79 79.574 3808000000 1070300000 861880000 568970000 184980000 189760000 0 593190000 338910000 9239 1296 7901 56025;56026;56027;56028;56029;56030;56031;56032;56033;56034;56035;56036;56037;56038;56039;56040;56041;56042;56043;56044;56045;56046;56047;56048;56049;56050;56051;56052;56053;56054 35632;35633;35634;35635;35636;35637;35638;35639;35640;35641;35642;35643;35644;35645;35646;35647;35648;35649;35650;35651;35652 35645 854;855 21 TMQYVDMIK Oxidation (M) 1143.5304 0.53041699 1296 Karp_01187 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 2 2 2 2 42.797 43.139 2 7.1129E-06 15373 20181213_JW_Orientia_Karp_1_2 196.79 136.32 3485500000 430720000 1198000000 890380000 144500000 167730000 115470000 486040000 52647000 9240 1296 7901 56055;56056;56057;56058;56059;56060;56061;56062;56063;56064;56065;56066;56067;56068;56069;56070 35653;35654;35655;35656;35657;35658;35659;35660;35661;35662;35663;35664;35665;35666;35667 35655 854;855 15 TMQYVDMIK Unmodified 1127.5355 0.53550237 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.329 50.631 2 0.00024615 19141 20181213_JW_Orientia_Karp_1_2 170.5 108.04 1751200000 569750000 542300000 399510000 125190000 47978000 61263000 0 5200300 9241 1296 7901 56071;56072;56073;56074;56075;56076;56077 35668;35669;35670;35671;35672;35673;35674 35669 6 TMVVEPLER Oxidation (M) 1088.5536 0.55359527 1219 Karp_00886 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 39.348 39.698 2 0.00066318 12338 20181213_JW_Orientia_Karp_2_3 141.52 81.402 583170000 158720000 141860000 101000000 27533000 42671000 16153000 95238000 0 9242 1219 7902 56078;56079;56080;56081;56082;56083;56084;56085 35675;35676;35677;35678;35679;35680;35681 35680 782 7 TNAATTTESNASTTQHIIPK Unmodified 2085.0338 0.033825909 1308 Karp_01249 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 33.749 34.135 3 0.021557 9935 20181213_JW_Orientia_Karp_1_2 68.243 29.246 25612000 0 8976300 13874000 0 0 0 0 2761300 9243 1308 7903 56086;56087;56088 35682 35682 1 TNAENEFVTIK Unmodified 1264.6299 0.62993134 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 44.556 44.891 2 3.4432E-13 15652 20181213_JW_Orientia_Karp_1_2 218.55 138.84 882590000 205840000 0 0 186110000 165520000 149570000 168380000 7162700 + 9244 995;996 7904 56089;56090;56091;56092;56093;56094;56095;56096 35683;35684;35685;35686;35687;35688;35689 35684 7 TNAENEFVTIK Deamidation (NQ) 1265.6139 0.61394692 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 1 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1 1 2 50.219 50.571 2 0.00083113 20068 20181213_JW_Orientia_Karp_1_1 143.24 72.015 128070000 28505000 16312000 25275000 19693000 7909100 16827000 64277 13487000 + 9245 995;996 7904 56097;56098;56099;56100;56101;56102;56103;56104;56105;56106 35690;35691;35692 35690 356;357 2 TNAENEFVTIKK Unmodified 1392.7249 0.72489436 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 35.105 35.436 2;3 5.3151E-07 10159 20181213_JW_Orientia_Karp_3_1 180.66 90.51 502920000 85037000 81697000 56465000 3139600 43159000 5983600 82063000 145370000 + 9246 995;996 7905 56107;56108;56109;56110;56111;56112;56113;56114;56115;56116;56117;56118;56119;56120 35693;35694;35695;35696;35697;35698;35699;35700 35699 8 TNAENEFVTIKK Deamidation (NQ) 1393.7089 0.70890994 995;996 H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;H6VRG2 KRT1 Keratin, type II cytoskeletal 1 no no 0 1 0 1 By MS/MS By MS/MS 1 1 40.503 40.904 3 0.00054787 12357 20181213_JW_Orientia_Karp_2_2 136.27 92.772 7121800 0 0 0 0 2319800 0 4802000 0 + 9247 995;996 7905 56121;56122 35701;35702 35701 356;357 2 TNDLEEFHPER Deamidation (NQ) 1386.6052 0.60517315 1270 Karp_01078 yes yes 0 1 0 0 By MS/MS By matching By MS/MS 1 1 1 41.722 42.056 3 0.010844 13400 20181213_JW_Orientia_Karp_3_1 96.604 73.378 14859000 0 0 9759200 0 1206100 0 3893400 0 9248 1270 7906 56123;56124;56125 35703;35704 35704 687 2 TNGKEPELLEPIPYEFMA Oxidation (M);Deamidation (NQ) 2093.9867 0.98672429 1674 Q6IAX2;Q59GK9;P46778 RPL21 60S ribosomal protein L21 yes no 0 1 1 1 By matching By MS/MS By matching 1 1 1 73.822 73.838 2 0.00084501 34195 20181213_JW_Orientia_Karp_1_2 124.3 78.387 63682000 18533000 25447000 19703000 0 0 0 0 0 9249 1674 7907 56126;56127;56128 35705 35705 1121 1296 1 TNGKEPELLEPIPYEFMA Deamidation (NQ) 2077.9918 0.99180966 1674 Q6IAX2;Q59GK9;P46778 RPL21 60S ribosomal protein L21 yes no 0 1 0 1 By matching By MS/MS By matching By matching 1 1 1 1 75.673 75.673 2 0.040174 35091 20181213_JW_Orientia_Karp_1_3 119.88 75.889 59585000 28772000 0 20684000 0 3481000 0 6648300 0 9250 1674 7907 56129;56130;56131;56132 35706 35706 1121 1 TNLAQMSSK Oxidation (M) 994.47534 0.47534495 1346 Karp_01522 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 2 1 16.839 17.209 2 0.00010697 3338 20181213_JW_Orientia_Karp_1_2 187.5 68.761 65442000 12177000 13623000 8142200 2635600 1204100 1802600 4390500 21467000 9251 1346 7908 56133;56134;56135;56136;56137;56138;56139;56140;56141;56142;56143 35707;35708;35709;35710;35711;35712;35713;35714 35708 914 8 TNLIVNYLPQNMTQDELR Unmodified 2161.0838 0.08375299 1809 Q15717;Q15717-2;M0QZR9 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 2 67.97 68.119 2 0.0019102 30293 20181213_JW_Orientia_Karp_1_2 108.66 47.239 15624000 6723400 3784000 5117000 0 0 0 0 0 9252 1809 7909 56144;56145;56146;56147 35715;35716;35717;35718 35717 4 TNLPIFK Unmodified 831.48544 0.48543935 1514 O60493;O60493-3;Q3SYF1;Q9UMY4-2;Q9UMY4 SNX3;SNX12 Sorting nexin-3;Sorting nexin-12 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 49.594 49.843 2 0.0136 18401 20181213_JW_Orientia_Karp_1_3 114.78 20.521 27249000 8753500 0 13029000 5466300 0 0 0 0 9253 1514 7910 56148;56149;56150;56151 35719;35720;35721 35720 3 TNLQMINDAITNR Deamidation (NQ) 1503.7351 0.73514147 1410 Karp_02227 yes yes 0 1 0 0 By MS/MS By matching By matching 1 1 1 52.012 52.195 2 0.006372 20573 20181213_JW_Orientia_Karp_1_1 116.24 66.043 18538000 4343200 4507300 9687600 0 0 0 0 0 9254 1410 7911 56152;56153;56154 35722 35722 924 1 TNLQMINDAITNR Oxidation (M) 1518.746 0.7460405 1410 Karp_02227 yes yes 0 0 1 0 By MS/MS 1 46.454 46.804 2 7.0923E-06 16708 20181213_JW_Orientia_Karp_1_2 194.06 146.35 0 0 0 0 0 0 0 0 0 9255 1410 7911 56155 35723 35723 1019 1 TNLQMINDAITNR Unmodified 1502.7511 0.75112588 1410 Karp_02227 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.49 52.836 2 6.1385E-08 20540 20181213_JW_Orientia_Karp_1_3 193.15 125.94 244090000 58638000 94088000 53809000 10718000 12138000 9038800 3577800 2083100 9256 1410 7911 56156;56157;56158;56159;56160;56161;56162;56163 35724 35724 1 TNMNLGHSGPSDR Oxidation (M) 1400.6103 0.6102753 1216 Karp_00883 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 18.781 19.161 3 0.023921 3479 20181213_JW_Orientia_Karp_1_2 78.964 34.352 9315300 0 1975600 2185300 2044700 71659 1249400 1494100 294600 9257 1216 7912 56164;56165;56166;56167;56168;56169;56170 35725;35726 35725 777 2 TNMNLGHSGPSDR Unmodified 1384.6154 0.61536068 1216 Karp_00883 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 24.476 24.859 3 0.024466 5720 20181213_JW_Orientia_Karp_1_2 88.803 61.372 7207400 0 3606600 0 970000 1483200 598960 0 548660 9258 1216 7912 56171;56172;56173;56174;56175 35727 35727 0 TNMTIITNK Oxidation (M) 1050.5379 0.53794521 1060 Karp_00004 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 27.65 27.972 2 0.00020404 7015 20181213_JW_Orientia_Karp_1_2 172.59 91.404 39852000 8578800 4138700 14595000 3142900 3128300 2844500 3423900 0 9259 1060 7913 56176;56177;56178;56179;56180;56181;56182 35728;35729;35730 35729 579 3 TNQELQEINR Unmodified 1243.6157 0.61567826 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YM50;H0YKS4;B4DNH8;H0YNP5;B3KRQ1;H0YN28;H0YL33;H0YMM1;H0YNA0;H0YN52;H0YLE2 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 32.812 33.102 2 5.3278E-20 8719 20181213_JW_Orientia_Karp_2_1 242.35 143.33 321110000 80576000 101600000 104470000 0 0 8932800 25529000 0 9260 124 7914 56183;56184;56185;56186;56187;56188 35731;35732;35733;35734;35735;35736;35737 35734 7 TNRPPLSLSR Unmodified 1139.6411 0.64110515 13 F8VUA6;F8VYV2;B4DDY5;A0A075B7A0;Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020-2;Q07020 RPL18 60S ribosomal protein L18 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 31.872 32.155 3 0.00086682 8580 20181213_JW_Orientia_Karp_3_1 127.83 78.642 95799000 37531000 29913000 20313000 0 1653000 1222000 5167100 0 9261 13 7915 56189;56190;56191;56192;56193;56194 35738;35739;35740;35741;35742 35742 5 TNSDITAILQK Unmodified 1202.6507 0.65066678 1207 Karp_00849 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.274 51.576 2 0.00048529 18400 20181213_JW_Orientia_Karp_2_2 141.91 81.892 68024000 18816000 18770000 11178000 7639100 4213200 6489300 0 917600 9262 1207 7916 56195;56196;56197;56198;56199;56200;56201 35743;35744;35745 35744 3 TNTASISFLINQTR Acetyl (Protein N-term);3 Deamidation (NQ) 1609.7835 0.78353145 1978 Q9HAL2 yes yes 1 3 0 0 By MS/MS 1 48.116 48.116 2 0.015829 17904 20181213_JW_Orientia_Karp_1_1 83.883 22.118 55629000 55629000 0 0 0 0 0 0 0 9263 1978 7917 56202 35746 35746 1222;1223;2089 1 TNTGLALR Unmodified 844.47667 0.47666558 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 33.753 34.103 2 0.0041471 9871 20181213_JW_Orientia_Karp_1_3 148.99 60.344 129510000 35607000 19890000 70618000 691470 0 0 2706600 0 9264 1466;1549 7918 56203;56204;56205;56206;56207 35747 35747 1 TNVATTTESNASTTQLIIPK Unmodified 2089.0903 0.090278155 1308 Karp_01249 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 51.815 52.125 2;3 0.0018421 20088 20181213_JW_Orientia_Karp_1_3 96.379 51.24 55049000 12769000 15495000 14065000 4206600 3852900 0 4661100 0 9265 1308 7919 56208;56209;56210;56211;56212;56213;56214;56215;56216;56217 35748;35749;35750;35751;35752 35750 5 TNVIYLFSIDK Unmodified 1311.7075 0.70745338 1227 Karp_00894 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 1 68.035 68.212 2 0.001187 26932 20181213_JW_Orientia_Karp_2_2 126.66 51.615 36574000 10658000 0 7995900 847200 7051100 5468400 0 4553500 9266 1227 7920 56218;56219;56220;56221;56222;56223;56224;56225 35753;35754;35755;35756;35757 35756 5 TNYIGHK Unmodified 831.4239 0.42390173 186 A0A024R9Q1;P07996;P07996-2;A0PJG0 THBS1 Thrombospondin-1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 13.922 14.373 2 0.015127 2426 20181213_JW_Orientia_Karp_3_1 111.65 48.501 1428800 0 0 0 0 0 0 1428800 0 + 9267 186 7921 56226;56227 35758;35759 35759 2 TNYPLPLNTR Unmodified 1187.6299 0.62987176 1150 Karp_00511 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.946 49.247 2 6.9851E-06 16132 20181213_JW_Orientia_Karp_3_2 166.86 97.236 1223100000 289690000 253920000 196720000 173860000 59766000 96506000 0 152680000 9268 1150 7922 56228;56229;56230;56231;56232;56233;56234 35760;35761;35762;35763;35764;35765;35766;35767 35767 8 TPAFAESVTEGDVR Unmodified 1477.7049 0.7048872 134 B7Z6J1;Q86SW4;Q6IBS5;A0A024R6C9;P36957;H0YJF9;G3V5M3;G3V3F0 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 47.23 47.575 2 8.0015E-12 16896 20181213_JW_Orientia_Karp_1_3 203.51 153.48 101110000 24532000 34439000 19672000 5558400 3714300 7402900 2209000 3585400 9269 134 7923 56235;56236;56237;56238;56239;56240;56241;56242 35768;35769;35770;35771 35770 4 TPAIPTAVNLADSR Unmodified 1424.7623 0.7623425 2006 Q9UQ35;O60382;A0AUK8 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.117 54.384 2 0.028547 21446 20181213_JW_Orientia_Karp_1_3 79.283 45.322 68051000 18790000 15570000 13346000 6162500 7660200 6521600 0 0 9270 2006 7924 56243;56244;56245;56246;56247;56248 35772 35772 1 TPALIVYGDQDPMGQTSFEHLK Oxidation (M) 2462.1788 0.17877559 591 B4DKK0;B4DNR3;F8W9U3;V9HW87;Q96IU4-2;Q96IU4 ABHD14B;HEL-S-299 Alpha/beta hydrolase domain-containing protein 14B yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 55.471 55.72 3 0.020016 22971 20181213_JW_Orientia_Karp_1_1 65.454 43.044 15951000 7441100 0 7071600 1438300 0 0 0 0 9271 591 7925 56249;56250;56251 35773 35773 364 1 TPAQFDADELR Unmodified 1261.5939 0.59388018 1548 Q5TZZ9;P04083;Q5T3N1 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.529 45.873 2 5.8093E-13 16097 20181213_JW_Orientia_Karp_1_2 218.07 107.66 788360000 184560000 196020000 212840000 59665000 0 28926000 33735000 72624000 9272 1548 7926 56252;56253;56254;56255;56256;56257;56258 35774;35775;35776;35777;35778;35779;35780;35781 35775 8 TPAQYDASELK Unmodified 1221.5877 0.58773217 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YM50;H0YKS4;B4DNH8;H0YNP5;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 36.119 36.44 2 1.6072E-09 10970 20181213_JW_Orientia_Karp_1_3 205.52 134.97 842050000 259930000 214040000 168310000 21041000 136740000 12519000 29472000 0 9273 124 7927 56259;56260;56261;56262;56263;56264;56265;56266 35782;35783;35784;35785;35786;35787;35788 35784 7 TPASPVVHIR Unmodified 1075.6138 0.61382777 477 B2R959;Q6NTA2;P14866;M0QXS5;M0QYL7;M0R1W6 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 32.618 32.985 3 7.0828E-05 9269 20181213_JW_Orientia_Karp_1_3 145.46 110.02 56339000 19453000 16320000 16014000 0 0 0 4551700 0 9274 477 7928 56267;56268;56269;56270;56271;56272;56273;56274 35789;35790;35791;35792;35793;35794 35791 6 TPAVEGLTEAEEEELR Unmodified 1771.8476 0.84758827 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q53GA0;Q68E05;O43399-2;O43399-4;O43399-3;Q5J908;O43399-6 TPD52L2;DKFZp686A1765 Tumor protein D54 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.26 54.51 2 1.3826E-62 19935 20181213_JW_Orientia_Karp_2_2 274.59 208.9 54499000 13956000 0 9101700 12695000 9505800 9240000 0 0 9275 1507 7929 56275;56276;56277;56278;56279;56280 35795;35796;35797;35798;35799;35800 35799 6 TPEELLR Unmodified 856.46543 0.46543219 100 M0R1L7;A0A024R4S0;O43633;M0QXX8 CHMP2A Charged multivesicular body protein 2a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 38.833 39.14 2 0.019746 11393 20181213_JW_Orientia_Karp_2_2 102.77 34.289 128010000 48021000 29329000 32412000 4032200 6177000 3485000 4551900 0 9276 100 7930 56281;56282;56283;56284;56285;56286;56287 35801;35802;35803;35804 35804 4 TPELNLDQFHDK Unmodified 1455.6994 0.69940789 1637 P27824;P27824-2;P27824-3;H0Y9Q7;D6RGY2;Q6ZP56;D6RFL1;H0Y9H1 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 46.602 46.777 3 0.00018305 16410 20181213_JW_Orientia_Karp_1_3 182.25 131 185940000 48561000 101760000 23007000 0 12608000 0 0 0 9277 1637 7931 56288;56289;56290;56291 35805;35806;35807;35808 35807 4 TPEMIIQK Oxidation (M) 974.51067 0.51066783 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 2 32.279 32.663 2 0.0096262 9705 20181213_JW_Orientia_Karp_1_1 101.28 22.669 23063000 4162500 0 9649200 2467500 2561500 0 2076300 2146000 9278 1782 7932 56292;56293;56294;56295;56296;56297;56298;56299 35809;35810 35809 1430 2 TPEQFLQLGEENLK Unmodified 1644.8359 0.83590137 1198 Karp_00817 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.981 61.302 2 1.1678E-88 26536 20181213_JW_Orientia_Karp_1_1 314.48 223.01 227240000 73766000 39512000 58727000 10938000 19911000 14156000 832920 9393100 9279 1198 7933 56300;56301;56302;56303;56304;56305;56306;56307 35811;35812;35813;35814;35815;35816;35817 35811 7 TPFLLSGTSYK Unmodified 1212.639 0.63903946 1710 P55084-2;P55084;D6W539;B5MD38;C9K0M0;C9JEY0;C9JE81 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 53.657 53.867 2 0.0055854 21768 20181213_JW_Orientia_Karp_1_1 95.483 34.655 81392000 24278000 21695000 29214000 0 1948400 4256800 0 0 9280 1710 7934 56308;56309;56310;56311;56312 35818;35819 35818 2 TPFLLVGTQIDLR Unmodified 1471.8399 0.83986454 199 A0A024RAE4;B7ZAY4;B4DMH5;B4E1U9;P60953;A0A024R9T1;Q5JYX0;Q9UJM1;A0A024RAE6;P60953-1 CDC42;hCG_39634 Cell division control protein 42 homolog yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 72.051 72.117 2 4.182E-22 33045 20181213_JW_Orientia_Karp_1_2 233.13 147.6 67123000 16979000 0 6589300 5194600 7248800 5566200 25545000 0 9281 199 7935 56313;56314;56315;56316;56317;56318;56319;56320 35820;35821;35822;35823;35824;35825;35826;35827 35821 8 TPFVTHPGYDTGNGIQLPGTSGQQPSVGQQMIFEEHGFR Deamidation (NQ) 4214.9756 0.97560611 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID4;Q9UQS6;O95617;A6YID7;H0Y4K8 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 1 0 0 By MS/MS 1 64.835 64.835 4 0.013407 28667 20181213_JW_Orientia_Karp_1_1 40.436 20.778 31165000 31165000 0 0 0 0 0 0 0 9282 85 7936 56321 35828 35828 47 1 TPGPGAQSALR Unmodified 1053.5567 0.55670682 1729 P62263;H0YB22;E5RH77 RPS14 40S ribosomal protein S14 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 30.112 30.485 2 0.0006998 8107 20181213_JW_Orientia_Karp_1_3 133.75 84.311 122900000 34119000 36011000 27270000 0 5650900 4579700 9369400 5899300 9283 1729 7937 56322;56323;56324;56325;56326;56327;56328 35829;35830;35831 35831 3 TPINLSDIVK Unmodified 1098.6285 0.62847478 1261 Karp_01021 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.974 57.275 2 2.6603E-05 23276 20181213_JW_Orientia_Karp_1_3 152.04 65.159 115610000 30941000 21267000 29186000 4995900 11893000 13711000 0 3619300 9284 1261 7938 56329;56330;56331;56332;56333;56334;56335;56336 35832;35833;35834;35835 35832 4 TPITVVK Unmodified 756.47454 0.47454032 716 B7Z2X4;B7Z992;P06396-2;B7Z9A0;B7Z6N2;P06396-4;P06396-3;P06396;Q5T0H7;Q5T0H8;CON__Q3SX14 GSN Gelsolin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 33.807 34.149 2 0.017678 9171 20181213_JW_Orientia_Karp_2_1 106.42 19.481 19570000 9122000 4986500 2605100 1400200 0 0 0 1456600 9285 716 7939 56337;56338;56339;56340;56341 35836;35837;35838;35839 35838 4 TPIVGQPSIPGGPVR Unmodified 1473.8304 0.83036248 797 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.851 52.158 2 3.2073E-06 20163 20181213_JW_Orientia_Karp_1_2 199.8 175.81 9701700000 2413300000 1083500000 2077700000 1224600000 988130000 824230000 1090200000 0 + 9286 797 7940 56342;56343;56344;56345;56346;56347;56348 35840;35841;35842;35843;35844;35845 35841 6 TPLHTSVENK Unmodified 1124.5826 0.58258722 1350 Karp_01526 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 21.091 21.372 2;3 0.0013761 4040 20181213_JW_Orientia_Karp_2_3 107.45 54.73 31254000 4173000 10978000 4744000 4189500 2358700 3101000 1709400 0 9287 1350 7941 56349;56350;56351;56352;56353;56354;56355;56356;56357;56358;56359;56360;56361 35846;35847;35848;35849;35850;35851;35852 35851 7 TPLIISGPVSDNTSLYPIINK Unmodified 2241.2256 0.22564942 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 2 2 1 72.002 72.095 2;3 1.8426E-75 32692 20181213_JW_Orientia_Karp_1_3 282.73 248.55 254410000 36554000 25435000 97908000 11334000 21608000 17430000 41592000 2551700 9288 1374 7942 56362;56363;56364;56365;56366;56367;56368;56369;56370;56371;56372;56373;56374;56375 35853;35854;35855;35856;35857;35858;35859;35860 35856 8 TPPPVPPKPSK Unmodified 1143.6652 0.66519463 1266 Karp_01074 yes no 0 0 0 1 By MS/MS 1 26.651 26.85 3 0.019811 6544 20181213_JW_Orientia_Karp_1_3 89.9 67.561 0 0 0 0 0 0 0 0 0 9289 1266 7943 56376 35861 35861 1 TPPTADQPPPRPAAPVLPTNTVSSAK Unmodified 2609.3813 0.38131522 1017 I3L2S3;Q05BP1;Q9ULH7-2;Q9ULH7-3;Q9ULH7-4;Q9ULH7;Q9ULH7-5 MKL2 Phosphatase and actin regulator;MKL/myocardin-like protein 2 yes no 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 46.985 47.445 3 0.0016913 16007 20181213_JW_Orientia_Karp_3_1 80.844 65.606 17156000 0 5421100 4498300 3391100 0 0 673720 3171500 9290 1017 7944 56377;56378;56379;56380;56381 35862;35863 35862 2 TPQAPASANLVGPR Unmodified 1377.7365 0.7364621 2006 Q9UQ35;O60382 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 41.623 41.805 2 0.042973 13839 20181213_JW_Orientia_Karp_1_2 93.623 67.109 33424000 12143000 9603700 11677000 0 0 0 0 0 9291 2006 7945 56382;56383;56384 35864 35864 0 TPQEWAPQTAR Unmodified 1283.6258 0.62584901 1026 J3KN66;Q5JTV8-3;Q5JTV8;H0Y4R4;H0YDU3;H0YD16 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 37.399 37.748 2 0.0032007 11714 20181213_JW_Orientia_Karp_1_2 112.83 66.377 48277000 15202000 10989000 15344000 952110 0 0 5788500 0 9292 1026 7946 56385;56386;56387;56388;56389 35865 35865 1 TPQMPPTTPSSSFFTK Oxidation (M) 1768.8342 0.83418681 838 D3DUZ3;Q16666-2;Q16666;Q16666-3;Q16666-6 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 49.6 49.85 2 0.00095437 18588 20181213_JW_Orientia_Karp_1_2 126.1 90.445 63563000 16950000 22997000 15309000 2567100 3602800 2136500 0 0 9293 838 7947 56390;56391;56392;56393;56394;56395 35866;35867;35868;35869 35867 481 4 TPSDTLSVQNK Unmodified 1188.5986 0.59863121 1302 Karp_01239 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 31.925 32.283 2 4.0284E-18 8945 20181213_JW_Orientia_Karp_1_3 228.2 140.95 391650000 85452000 144760000 61872000 24178000 9085600 16924000 35535000 13844000 9294 1302 7948 56396;56397;56398;56399;56400;56401;56402;56403 35870;35871;35872;35873;35874;35875;35876;35877 35872 8 TPSETPGPSPAGPTR Unmodified 1450.7052 0.70522155 1770 Q05BV5 OGFR yes yes 0 0 0 0 By MS/MS 1 32.499 32.499 2 0.0042804 9561 20181213_JW_Orientia_Karp_1_1 120.57 66.823 0 0 0 0 0 0 0 0 0 9295 1770 7949 56404 35878 35878 1 TPSFGISAPQVSIPDVNVNLK Unmodified 2182.1634 0.16338352 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 2 72.022 72.134 2;3 7.348E-06 32986 20181213_JW_Orientia_Karp_1_1 180.7 136.08 198080000 31284000 33414000 41656000 8117600 10342000 6615100 57116000 9537600 9296 1782 7950 56405;56406;56407;56408;56409;56410;56411;56412;56413;56414 35879;35880;35881;35882;35883 35879 5 TPSGLYLGTCER Unmodified 1352.6395 0.63945017 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 44.959 45.159 2 4.0323E-05 15534 20181213_JW_Orientia_Karp_1_3 169.58 129.7 545020000 242050000 0 98687000 192950000 11334000 0 0 0 9297 195 7951 56415;56416;56417;56418 35884;35885;35886 35886 3 TPSNTPSAEADWSPGLELHPDYK Unmodified 2511.1554 0.15539761 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3-2;Q59H15 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 54.538 54.858 3 0.0058959 22503 20181213_JW_Orientia_Karp_1_1 69.27 48.645 112720000 62248000 47969000 0 0 0 0 0 2500300 9298 2015 7952 56419;56420;56421;56422 35887;35888;35889;35890;35891 35887 5 TPTLTSIYCR Unmodified 1210.6016 0.6016081 1640 P29590-4;P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;Q9BZY1;H3BT57;Q59H09;Q15156;P29590-14;P29590-10;P29590-12;P29590-13;P29590-11;Q59GQ8 PML;PML-RAR Protein PML yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 47.921 48.248 2 0.007779 18043 20181213_JW_Orientia_Karp_1_1 97.431 41.754 45188000 6292600 14880000 7103400 9447200 0 2526400 0 4938000 9299 1640 7953 56423;56424;56425;56426;56427;56428 35892 35892 1 TPVEPEVAIHR Unmodified 1246.667 0.66698555 1718 P60866;P60866-2;E5RIP1;E5RJX2 RPS20 40S ribosomal protein S20 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 36.796 37.08 3 0.0019714 11874 20181213_JW_Orientia_Karp_1_1 103.21 81.582 200330000 105670000 50099000 29175000 0 7660900 3286500 4438200 0 9300 1718 7954 56429;56430;56431;56432;56433;56434 35893 35893 1 TPVLFDIYEIK Unmodified 1336.7279 0.72785447 618 B4DPJ2;Q6ICS0;Q5T0G8;Q59EP1;B7Z6L0;P50995-2;P50995 ANXA11 Annexin;Annexin A11 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 70.905 70.995 2 0.037897 32299 20181213_JW_Orientia_Karp_1_2 96.143 63.331 29849000 7347300 9379800 5409400 0 0 683090 7029800 0 9301 618 7955 56435;56436;56437;56438;56439 35894 35894 0 TPVSEKVTK Unmodified 987.56006 0.56006086 792 CON__P02769 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 16.945 17.315 2 0.019181 3290 20181213_JW_Orientia_Karp_2_3 134.05 64.876 20687000 2054300 2794100 2020800 2975100 1109200 1625200 1357500 6750700 + 9302 792 7956 56440;56441;56442;56443;56444;56445;56446;56447 35895;35896 35896 2 TPVTQVNEVTGTLR Unmodified 1513.81 0.81002097 109 H0YDP7;Q59GE9;A0A024R578;Q13405 MRPL49 39S ribosomal protein L49, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 47.408 47.77 2 0.0036957 17359 20181213_JW_Orientia_Karp_1_2 132.5 71.674 23017000 6276700 6939200 5563000 0 0 0 722510 3516000 9303 109 7957 56448;56449;56450;56451;56452 35897 35897 1 TPYTIMFGPDK Oxidation (M) 1284.606 0.60602477 1637 P27824;P27824-2;P27824-3;Q16094;H0Y9Q7;D6RGY2;Q6ZP56;D6RFL1;H0Y9H1 CANX Calnexin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 51.527 51.893 2 0.00020199 18577 20181213_JW_Orientia_Karp_2_2 153.1 104.6 163960000 66755000 47602000 0 17652000 8961700 12721000 6847800 3418400 9304 1637 7958 56453;56454;56455;56456;56457;56458;56459;56460 35898;35899;35900;35901;35902;35903;35904 35901 1261 7 TPYTIMFGPDK Unmodified 1268.6111 0.61111015 1637 P27824;P27824-2;P27824-3;Q16094;H0Y9Q7;D6RGY2;Q6ZP56;D6RFL1;H0Y9H1 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 57.075 57.42 2 0.00039063 24091 20181213_JW_Orientia_Karp_1_1 145.99 103.39 119500000 35152000 45476000 24789000 1769100 1940700 3433900 291030 6646600 9305 1637 7958 56461;56462;56463;56464;56465;56466;56467;56468 35905;35906;35907 35905 3 TQEELTPFFK Unmodified 1238.6183 0.61830402 806 CON__P81644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 2 56.863 57.278 2 6.4445E-45 19922 20181213_JW_Orientia_Karp_3_1 280.96 142.56 320100000 22498000 18498000 28749000 23464000 33809000 53937000 106630000 32517000 + 9306 806 7959 56469;56470;56471;56472;56473;56474;56475;56476;56477;56478;56479 35908;35909;35910;35911;35912;35913;35914;35915;35916;35917;35918;35919;35920;35921 35916 14 TQEQLALEMAELTAR Unmodified 1702.856 0.85598488 1630 V9HWC0;P26038 HEL70;MSN Moesin yes no 0 0 0 0 By MS/MS By MS/MS By matching 2 1 1 64.664 64.764 2;3 0.0018511 28583 20181213_JW_Orientia_Karp_1_1 170.42 120.31 51442000 23706000 0 0 0 17104000 10632000 0 0 9307 1630 7960 56480;56481;56482;56483 35922;35923 35922 2 TQEQLALEMAELTAR Oxidation (M) 1718.8509 0.85089951 1630 V9HWC0;P26038 HEL70;MSN Moesin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.366 52.711 2 2.293E-19 19203 20181213_JW_Orientia_Karp_2_3 214.48 160.88 48774000 7680000 10711000 10604000 4800500 5627600 4867500 4272000 211420 9308 1630 7960 56484;56485;56486;56487;56488;56489;56490;56491 35924;35925;35926;35927;35928;35929;35930;35931 35929 1256 7 TQETLSQAGQK Unmodified 1189.5939 0.59388018 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q68E05;O43399-2;O43399-4;O43399-3;B4DDV4;O43399-6 TPD52L2;DKFZp686A1765 Tumor protein D54 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 22.672 22.953 2 0.0015508 5191 20181213_JW_Orientia_Karp_1_1 121.36 64.55 3748400 1980600 0 0 713480 241640 366730 445930 0 9309 1507 7961 56492;56493;56494;56495;56496;56497 35932;35933 35932 2 TQETPSAQMEGFLNR Oxidation (M) 1723.7835 0.78354822 506 D6W5C0;B2ZZ89;Q01082;K9MS24;B4DIF8 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS 1 42.389 43.041 2 0.020994 13837 20181213_JW_Orientia_Karp_3_1 101.71 70.115 0 0 0 0 0 0 0 0 0 9310 506 7962 56498 35934 35934 326 1 TQEVLQAVAEK Unmodified 1214.6507 0.65066678 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 40.919 41.168 2 0.013899 12801 20181213_JW_Orientia_Karp_2_1 89.356 30.541 36310000 14181000 12161000 6624000 3344500 0 0 0 0 9311 1764 7963 56499;56500;56501;56502 35935 35935 1 TQFNNVVNKLRLMEQK 3 Deamidation (NQ) 1964.0037 0.0037117545 873 Q7RTM4;E7ENN3;E9PEL9;Q8NF91-7;Q8NF91-4;Q8NF91 SYNE1 Nesprin-1 yes no 0 3 0 2 By MS/MS 1 26.263 26.611 3 0.038113 6004 20181213_JW_Orientia_Karp_2_1 53.981 13.18 0 0 0 0 0 0 0 0 0 9312 873 7964 56503 35936 35936 1690;1691 1 TQGVNIEQFRELK 2 Deamidation (NQ) 1562.794 0.79403655 765 C9J5I7;C9JZ23;Q9BYH8-3;Q9BYH8-2;Q9BYH8 NFKBIZ NF-kappa-B inhibitor zeta yes no 0 2 0 1 By MS/MS 1 52.377 52.727 3 0.016927 20603 20181213_JW_Orientia_Karp_1_2 75.89 6.6288 9702500 0 9702500 0 0 0 0 0 0 9313 765 7965 56504 35937 35937 251;1631;1632 0 TQLEELEDELQATEDAK Unmodified 1960.9113 0.91131074 47;944 A0A024R1N1;P35579;P35579-2;Q6ZNL4;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;O14729;O14794;Q66K75 MYH9;FLJ00279;MYH10;MYH11 Myosin-9;Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 64.125 64.357 2 0 28270 20181213_JW_Orientia_Karp_1_1 448.81 337.32 586210000 116580000 269830000 118440000 3421900 44214000 25495000 125780 8100000 9314 47;944 7966 56505;56506;56507;56508;56509;56510;56511;56512 35938;35939;35940;35941;35942 35938 5 TQLEWTEAILEDEQTQR Unmodified 2088.9964 0.99637777 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By matching 1 1 65.614 65.739 2 3.4675E-06 29152 20181213_JW_Orientia_Karp_1_1 166.9 107.01 30249000 16320000 13929000 0 0 0 0 0 0 9315 279 7967 56513;56514 35943 35943 1 TQLSANVNGVTK Deamidation (NQ) 1231.6408 0.64083038 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 36.35 36.663 2 0.0016397 11685 20181213_JW_Orientia_Karp_1_1 136.81 57.868 26137000 13601000 9491100 0 0 2263900 0 781460 0 9316 1266 7968 56515;56516;56517;56518;56519 35944;35945 35944 685 2 TQMLDQEELLASTR Unmodified 1633.7981 0.79813565 834 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1VPF7;M1VRN0;M1VKI9;M1VE89;M1V481 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12;KIF5B-ALK_K17;A20 Kinesin-like protein;Kinesin-1 heavy chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 55.221 55.49 2 0.00071514 22793 20181213_JW_Orientia_Karp_1_1 141.65 79.48 17505000 8059800 0 9193200 0 0 0 0 252480 9317 834 7969 56520;56521;56522;56523 35946;35947;35948 35946 3 TQQAAQANITLQEQIEAIHK Unmodified 2234.1655 0.16550878 46 B4E091;A0A024R1K8;Q15459;H7C1L2;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 49.39 49.623 3 0.033349 18309 20181213_JW_Orientia_Karp_1_3 45.844 19.37 26545000 0 9450500 15154000 0 1940400 0 0 0 9318 46 7970 56524;56525;56526 35949 35949 1 TQQSNIWVNMGMMSLR 3 Oxidation (M);2 Deamidation (NQ) 1944.838 0.83796833 1046 K7EII4 USP32 yes yes 0 2 3 0 By matching By matching By MS/MS By matching 1 1 1 1 56.788 57.138 2 0.030796 21476 20181213_JW_Orientia_Karp_2_1 45.077 13.356 250090000 68924000 0 67483000 69185000 0 0 44493000 0 9319 1046 7971 56527;56528;56529;56530 35950 35950 386;1784 1 TQTAIASEDMPNTLTEAEK Oxidation (M) 2064.9521 0.95212969 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 42.973 43.156 2 1.7336E-12 15050 20181213_JW_Orientia_Karp_1_1 182.7 131.08 14532000 4959500 4683400 4889500 0 0 0 0 0 9320 506 7972 56531;56532;56533 35951;35952 35951 327 2 TQTAIASEDMPNTLTEAEK Unmodified 2048.9572 0.95721507 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.498 50.688 2 6.9811E-10 19346 20181213_JW_Orientia_Karp_1_2 176.19 110.95 32997000 8818700 14244000 6442400 0 1799500 1693300 0 0 9321 506 7972 56534;56535;56536;56537;56538 35953;35954;35955 35953 3 TQTPPVSPAPQPTEER Unmodified 1733.8584 0.85842773 117 A0A024R5M3;Q53HG7;Q14247-3;Q14247;Q14247-2;H0YEV2;B3KRK4;H0YCD9;B4E358 CTTN Src substrate cortactin yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 38.757 39.09 2 3.07E-05 12329 20181213_JW_Orientia_Karp_1_2 157.2 115.2 85216000 15898000 17423000 13565000 12198000 4027700 6375200 10010000 5719500 9322 117 7973 56539;56540;56541;56542;56543;56544;56545;56546 35956;35957;35958;35959;35960 35956 5 TQTVCNFTDGALVQHQEWDGK Unmodified 2433.1019 0.10192225 871 E7DVW5;Q01469;I6L8B7;A8MUU1 FABP5;FABP5P3 Fatty acid-binding protein, epidermal;Putative fatty acid-binding protein 5-like protein 3 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.213 51.516 3 8.5524E-06 17593 20181213_JW_Orientia_Karp_3_2 137.27 112.11 33666000 11114000 13596000 0 0 0 6471200 0 2484600 9323 871 7974 56547;56548;56549;56550;56551 35961;35962;35963 35963 3 TQVTVQYMQDR Oxidation (M) 1383.6453 0.64526383 561 B4DEX8;P31153-2;P31153 MAT2A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2 yes no 0 0 1 0 By matching By MS/MS 1 1 34.318 34.592 2 0.024772 9949 20181213_JW_Orientia_Karp_1_3 79.659 36.351 4465500 0 3284100 1181400 0 0 0 0 0 9324 561 7975 56552;56553 35964 35964 350 1 TQYIIEMQVDPTQGFEK Unmodified 2025.9717 0.97174292 1068 Karp_00028 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 65.675 65.927 2 1.195E-08 28922 20181213_JW_Orientia_Karp_1_2 170.11 119.1 24997000 0 7348500 7486200 0 0 3154100 6630100 377960 9325 1068 7976 56554;56555;56556;56557;56558;56559 35965;35966;35967 35966 3 TRHILSFSQSDSVDNFDSHTNLPNLPAIDFSNIGIGNPK Unmodified 4267.0934 0.093413058 1178 Karp_00644 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 68.21 68.419 5 0.0036172 30183 20181213_JW_Orientia_Karp_1_3 49.972 34.961 363710000 56532000 82593000 50592000 49391000 76415000 0 0 48186000 9326 1178 7977 56560;56561;56562;56563;56564;56565 35968;35969;35970;35971;35972;35973 35970 6 TRLEQEIATYR Unmodified 1378.7205 0.72047768 790;795;924;807;277 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;CON__P19012;CON__A2A4G1;P19012;Q13092;B3KVF5;CON__Q61782;A8MT21;P19012-2;CON__P35900;CON__Q9D312;P35900;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P13646-1;A8K2H9;A1A4E9;B4DL17;CON__Q04695;CON__Q9QWL7;Q04695;Q14666;F5GWP8 KRT14;KRT15;K14;KRT20;KRT16;KRT13;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 17 no no 0 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 3 1 2 37.946 38.258 2;3 0.0052359 11568 20181213_JW_Orientia_Karp_3_1 114.76 59.724 162250000 32279000 33395000 44450000 15060000 4999300 5594400 26472000 0 + 9327 790;795;277;807;924 7978 56566;56567;56568;56569;56570;56571;56572;56573;56574;56575;56576;56577;56578;56579 35974;35975;35976;35977 35977 4 TRLQQELDDLLVDLDHQR Unmodified 2206.1342 0.13420866 47 A0A024R1N1;P35579 MYH9 Myosin-9 yes no 0 0 0 1 By matching By matching By MS/MS 1 1 1 65.321 65.605 3 2.136E-06 22784 20181213_JW_Orientia_Karp_3_1 150.9 95.357 14719000 0 6047900 0 0 0 1669900 7001100 0 9328 47 7979 56580;56581;56582 35978 35978 1 TSAALSTVGSAISR Unmodified 1319.7045 0.70449327 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q53GA0;Q68E05;O43399-2;O43399-4;O43399-3;B4DDV4;O43399-6 TPD52L2;DKFZp686A1765 Tumor protein D54 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.076 45.36 2 5.0734E-12 16245 20181213_JW_Orientia_Karp_1_1 206.1 145.7 105890000 58494000 0 45953000 0 0 0 1447900 0 9329 1507 7980 56583;56584;56585;56586 35979;35980;35981 35979 3 TSACCPSCR Unmodified 1097.4052 0.40523325 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 17.794 18.019 2 0.0060482 3228 20181213_JW_Orientia_Karp_1_2 101.9 90.385 2016700 750050 598880 522760 0 0 0 145030 0 9330 1466;1549 7981 56587;56588;56589;56590 35982 35982 1 TSAFVGMER Oxidation (M) 1012.4648 0.46478027 1358 Karp_01807 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 29.994 30.382 2 0.00064719 8560 20181213_JW_Orientia_Karp_1_1 147.29 94.122 78630000 47023000 0 0 14220000 5987700 0 11400000 0 9331 1358 7982 56591;56592;56593;56594;56595;56596 35983;35984;35985;35986;35987;35988;35989;35990 35983 933 8 TSASQPLSEQSEPLTISIDK Unmodified 2130.0692 0.069208362 1307 Karp_01248 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 56.809 56.992 2 0.0076731 23798 20181213_JW_Orientia_Karp_1_1 101.04 72.686 39501000 16387000 12009000 11104000 0 0 0 0 0 9332 1307 7983 56597;56598;56599 35991 35991 1 TSATVGPK Unmodified 759.41267 0.41266834 1602 P16104 H2AFX Histone H2AX yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 18.152 18.382 2 0.025926 3480 20181213_JW_Orientia_Karp_1_1 84.916 0.89079 26763000 14745000 0 10839000 766280 0 56535 355640 0 9333 1602 7984 56600;56601;56602;56603;56604;56605 35992;35993 35992 2 TSAYGPPTR Unmodified 948.46649 0.46649483 206 B4DMD3;B4DY34;A0A024RAW9;Q9Y2W2 WBP11 WW domain-binding protein 11 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 27.52 27.881 2 0.030453 6949 20181213_JW_Orientia_Karp_1_3 77.732 31.306 13715000 1700400 0 3471300 0 1895100 1477700 2433800 2736600 9334 206 7985 56606;56607;56608;56609;56610;56611 35994 35994 1 TSDLIVLGLPWK Unmodified 1340.7704 0.77038799 91 B4DRW3;A0A024R4E2;Q13148;K7EJM5;K7EN94;B1AKP7;G3V162 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 0 By MS/MS 1 73.528 73.526 2 0.002259 33681 20181213_JW_Orientia_Karp_1_3 160.36 111.01 0 0 0 0 0 0 0 0 0 9335 91 7986 56612 35995 35995 1 TSDPTMSSFR Oxidation (M) 1143.4866 0.48663792 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 30.412 30.762 2 0.02226 8250 20181213_JW_Orientia_Karp_1_3 79.986 39.104 21402000 5107200 6349400 5900400 1493400 1186000 0 1365300 0 9336 852 7987 56613;56614;56615;56616;56617;56618 35996;35997 35996 489 2 TSEVPYAGINIGPVHK Unmodified 1680.8835 0.88352026 1516 Q8N5A0;O60841;B3KM86;D3DVI5 EIF5B Eukaryotic translation initiation factor 5B yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 50.258 50.44 3 0.038804 19065 20181213_JW_Orientia_Karp_1_2 46.318 7.952 23485000 10499000 5570700 7415600 0 0 0 0 0 9337 1516 7988 56619;56620;56621 35998 35998 1 TSFFQALGITTK Unmodified 1312.7027 0.70270235 229 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;P05388-2;F8VPE8;G3V210;F8VW21;B4E3D5;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 66.868 66.918 2 0.0029703 29361 20181213_JW_Orientia_Karp_1_3 116.24 77.671 15143000 8160600 0 5711600 0 0 1271200 0 0 9338 229 7989 56622;56623;56624 35999 35999 1 TSFLDDAFR Unmodified 1070.5033 0.50327426 1796 Q14204;H0YJ21 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 58.937 59.119 2 0.0077257 24455 20181213_JW_Orientia_Karp_1_3 98.582 49.14 17324000 8748700 4723700 3851300 0 0 0 0 0 9339 1796 7990 56625;56626;56627 36000;36001;36002;36003 36002 4 TSFSPCVPQCQTQGSYGSFTEQHR Unmodified 2788.197 0.19696162 1849 Q5T749 KPRP Keratinocyte proline-rich protein yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 47.251 47.596 3 0.0012395 15254 20181213_JW_Orientia_Karp_3_2 88.09 67.465 82219000 16624000 21300000 14595000 5027600 5044200 3906700 1567200 14154000 9340 1849 7991 56628;56629;56630;56631;56632;56633;56634;56635 36004;36005;36006;36007 36007 4 TSFTSVSR Unmodified 883.43995 0.43994572 799;679 B4E1T1;F8VU69;CON__P13647;P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 30.039 30.399 2 0.0046798 7681 20181213_JW_Orientia_Karp_3_1 127.46 66.49 15777000 3520700 0 0 3020100 2070200 1385700 5780300 0 + 9341 679;799 7992 56636;56637;56638;56639;56640 36008 36008 1 TSIAIDTIINQK Unmodified 1315.7347 0.73473076 1628 V9HW26;P25705-2;P25705;P25705-3;K7EK77;K7ENJ4 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 56.155 56.528 2 1.6951E-12 23472 20181213_JW_Orientia_Karp_1_1 210.08 107.45 90198000 40366000 13171000 21390000 7534500 6103700 0 964780 668490 9342 1628 7993 56641;56642;56643;56644;56645;56646;56647 36009;36010;36011;36012;36013 36009 5 TSIEDQDELSSLLQVPLVAGTVNR Unmodified 2583.3392 0.33917563 1713 P56537-2;P56537 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 75.587 75.599 3 1.7059E-06 35057 20181213_JW_Orientia_Karp_1_3 130.83 76.607 29165000 0 14017000 12177000 708040 2262600 0 0 0 9343 1713 7994 56648;56649;56650;56651 36014;36015;36016;36017 36016 4 TSINDLLR Unmodified 930.51345 0.51344502 1192 Karp_00723 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 52.631 52.831 2 0.0013158 19212 20181213_JW_Orientia_Karp_2_3 176.09 62.675 188100000 78765000 65349000 0 0 0 43983000 0 0 9344 1192 7995 56652;56653;56654 36018;36019;36020 36020 3 TSINDLLR Deamidation (NQ) 931.49746 0.4974606 1192 Karp_00723 yes yes 0 1 0 0 By MS/MS 1 48.517 48.867 2 0.02241 17976 20181213_JW_Orientia_Karp_1_2 104.44 11.241 0 0 0 0 0 0 0 0 0 9345 1192 7995 56655 36021 36021 604 1 TSLALDESLFR Unmodified 1250.6507 0.65066678 1893 Q86U42-2;Q86U42;H0YJH9;B4DEH8;G3V4T2;Q92843-2 PABPN1 Polyadenylate-binding protein 2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 62.403 62.616 2 0.0025133 24623 20181213_JW_Orientia_Karp_2_1 115.7 76.551 10839000 2611100 0 0 485550 4607800 3134200 0 0 9346 1893 7996 56656;56657;56658;56659 36022;36023 36022 2 TSLATAITIVSSELSDGAVK Unmodified 1962.0521 0.052101735 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 4 2 3 2 4 73.992 74.027 2;3 4.3437E-49 27516 20181213_JW_Orientia_Karp_3_1 255.39 153.84 5985400000 1957000000 1736600000 1377400000 156770000 166920000 128400000 444690000 17518000 9347 1176;1244 7997 56660;56661;56662;56663;56664;56665;56666;56667;56668;56669;56670;56671;56672;56673;56674;56675;56676;56677;56678;56679;56680;56681;56682 36024;36025;36026;36027;36028;36029;36030;36031;36032 36031 8 TSLDWWITDK Unmodified 1263.6136 0.61355299 260 A0A024RDG6;Q14108 SCARB2 Lysosome membrane protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 65.967 66.105 2 7.2951E-06 28775 20181213_JW_Orientia_Karp_1_3 166.07 99.151 21893000 0 4631000 9343100 0 5355000 2563500 0 0 9348 260 7998 56683;56684;56685;56686;56687 36033;36034;36035;36036;36037 36034 5 TSMGGTQQQFVEGVR Oxidation (M) 1639.7624 0.76241885 72 B4DSW9;B4DL06;B4DGU4;B5BU28;A0A024R2Q3;P35222 CTNNB1 Catenin beta-1 yes no 0 0 1 0 By MS/MS By MS/MS 1 1 38.287 38.386 2 0.00029529 11991 20181213_JW_Orientia_Karp_1_3 144.28 69.362 10664000 5848600 0 4815000 0 0 0 0 0 9349 72 7999 56688;56689 36038;36039 36039 79 2 TSNINVDCSNLQNK Unmodified 1605.7417 0.74168341 1337 Karp_01411 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 36.38 36.663 2 4.737E-13 11132 20181213_JW_Orientia_Karp_1_2 210.15 136.26 30747000 11306000 6848000 7113000 0 1516500 1188300 2774600 0 9350 1337 8000 56690;56691;56692;56693;56694;56695 36040;36041;36042;36043;36044;36045 36041 6 TSNLCSEITLPTGR Unmodified 1547.7614 0.76135622 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.821 53.187 2 3.1523E-05 21298 20181213_JW_Orientia_Karp_1_1 190.85 104.51 136870000 48155000 42861000 0 12118000 11400000 10026000 9743800 2567000 9351 1133 8001 56696;56697;56698;56699;56700;56701;56702;56703 36046;36047;36048;36049;36050;36051;36052 36047 7 TSPLIIDLINQK Unmodified 1353.7868 0.78676633 1197 Karp_00816 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 67.719 67.92 2 1.9725E-05 30584 20181213_JW_Orientia_Karp_1_1 174.98 118.97 105390000 21734000 12207000 37389000 0 15918000 8324000 4028900 5793300 9352 1197 8002 56704;56705;56706;56707;56708;56709;56710 36053;36054;36055;36056;36057;36058 36053 6 TSPNEGLSGNPADLER Unmodified 1655.7751 0.77509203 219 A0A024RBC7;P20020-5;P20020-2;P20020-6;P20020-3;P20020-4;P20020;Q58F24 ATP2B1 Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 43.826 44.008 2 0.00047498 14966 20181213_JW_Orientia_Karp_1_3 135.91 86.446 20174000 9414200 4084400 6675100 0 0 0 0 0 9353 219 8003 56711;56712;56713 36059;36060;36061 36061 3 TSQNSELNNMQDLVEDYK Oxidation (M) 2142.9375 0.93754226 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 3 2 1 2 45.829 46.124 2;3 2.5572E-101 15404 20181213_JW_Orientia_Karp_2_1 311.33 240.18 72172000 10951000 10939000 5910100 9288000 12571000 6431800 4684200 11396000 + 9354 804;1657 8004 56714;56715;56716;56717;56718;56719;56720;56721;56722;56723;56724;56725;56726;56727;56728 36062;36063;36064;36065;36066;36067;36068;36069;36070;36071;36072 36066 468 11 TSQNSELNNMQDLVEDYK Unmodified 2126.9426 0.94262764 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 58.55 58.8 2 2.3559E-120 22383 20181213_JW_Orientia_Karp_2_1 323.02 198.9 87544000 21668000 22445000 20059000 12484000 5680900 5207700 0 0 + 9355 804;1657 8004 56729;56730;56731;56732;56733;56734 36073;36074;36075;36076;36077 36076 5 TSQNSELNNMQDLVEDYK Oxidation (M);Deamidation (NQ) 2143.9216 0.92155785 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 1 1 0 By MS/MS By MS/MS 1 1 47.933 48.207 2 3.9222E-31 17587 20181213_JW_Orientia_Karp_1_2 236.12 174.78 0 0 0 0 0 0 0 0 0 + 9356 804;1657 8004 56735;56736 36078;36079 36078 297;298;299 468 2 TSQNSELNNMQDLVEDYK Deamidation (NQ) 2127.9266 0.92664323 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 1 0 0 By MS/MS 1 62.349 62.548 2 0.0061284 26538 20181213_JW_Orientia_Karp_1_3 142.97 104.19 0 0 0 0 0 0 0 0 0 + 9357 804;1657 8004 56737 36080 36080 297;298;299 1 TSQNSELNNMQDLVEDYKK Oxidation (M) 2271.0325 0.03250528 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.09 39.466 3 6.2829E-05 12179 20181213_JW_Orientia_Karp_3_1 129.36 101.29 167450000 29889000 24379000 20770000 39807000 0 0 30294000 22313000 + 9358 804;1657 8005 56738;56739;56740;56741;56742;56743 36081;36082;36083;36084;36085;36086;36087 36086 468 7 TSQNSELNNMQDLVEDYKK Unmodified 2255.0376 0.037590658 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.21 51.555 3 3.3565E-07 17592 20181213_JW_Orientia_Karp_3_2 152.59 120.5 473790000 84429000 91902000 65009000 51189000 63664000 50570000 48534000 18491000 + 9359 804;1657 8005 56744;56745;56746;56747;56748;56749;56750;56751 36088;36089;36090;36091;36092;36093;36094;36095;36096;36097 36097 10 TSQNSELNNMQDLVEDYKK Oxidation (M);Deamidation (NQ) 2272.0165 0.016520865 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 1 1 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 1 1 1 40.919 41.204 3 0.0031405 11617 20181213_JW_Orientia_Karp_2_2 95.767 72.892 150910000 34863000 28228000 26172000 7132300 30484000 3356900 19015000 1658700 + 9360 804;1657 8005 56752;56753;56754;56755;56756;56757;56758;56759;56760;56761;56762;56763;56764 36098;36099;36100;36101 36101 297;298;299 468 3 TSRPENAIIYNNNEDFQVGQAK Unmodified 2507.2041 0.20407913 527 B3KSI4;V9HWD9;Q53EM5;P29401;P29401-2;B4DVU1;B4E022;B3KPZ8 HEL107;TKT Transketolase yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 46.057 46.279 3 0.0050532 16764 20181213_JW_Orientia_Karp_1_1 122.19 87.059 21689000 5791000 0 10107000 0 2001000 1947400 0 1843000 9361 527 8006 56765;56766;56767;56768;56769 36102 36102 1 TSSAETPTIPLGSAVEAIK Unmodified 1870.9888 0.9887732 592 B4DS66;B4DKR1;Q16891-2;Q16891;H7C463;C9J406;B9A067;B4DQY2;Q16891-3;Q16891-4;B4DT20 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By matching 1 1 62.189 62.364 2 0.018501 27118 20181213_JW_Orientia_Karp_1_1 79.885 43.886 24576000 11101000 13475000 0 0 0 0 0 0 9362 592 8007 56770;56771 36103 36103 1 TSSAGSLTNQQLIQQSSTLSEYK Unmodified 2470.2187 0.21872615 1350 Karp_01526 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 2 1 1 1 53.483 53.707 2;3 6.9074E-100 21635 20181213_JW_Orientia_Karp_1_1 298.1 228.89 185440000 66321000 32087000 52820000 14962000 9974200 9279200 0 0 9363 1350 8008 56772;56773;56774;56775;56776;56777;56778;56779 36104;36105;36106;36107 36104 4 TSTNIVLINK Unmodified 1101.6394 0.63937381 1061 Karp_00005 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 44.255 44.572 2 1.5449E-06 15456 20181213_JW_Orientia_Karp_1_2 182.39 61.523 110390000 37255000 34353000 19862000 4759900 0 376270 13780000 0 9364 1061 8009 56780;56781;56782;56783;56784;56785;56786 36108;36109;36110;36111;36112 36109 5 TSTQNPDALFIAELTK Unmodified 1747.8992 0.89922991 1268 Karp_01076 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.21 67.277 2 1.1925E-06 26754 20181213_JW_Orientia_Karp_2_3 192.39 135.46 1044200000 550980000 0 0 0 356620000 136620000 0 0 9365 1268 8010 56787;56788;56789;56790;56791 36113;36114;36115;36116;36117 36116 5 TSVPHTTDTSHSITQK Unmodified 1738.8486 0.84859132 1308 Karp_01249 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 23.88 24.257 3 0.01237 5523 20181213_JW_Orientia_Karp_1_2 73.758 45.117 7850600 0 5224400 1187800 0 580960 0 0 857440 9366 1308 8011 56792;56793;56794;56795 36118 36118 1 TSVQTEDDQLIAGQSAR Unmodified 1817.8755 0.87553435 684;1631 G3XAM7;B4E2G8;P35221;P35221-2;B4DKT9;B4DU00;P35221-3;B3KSR8;F6KRI5;Q49AD3;P26232-4;P26232-6;P26232-3;P26232-2;P26232;P26232-5 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 42.432 42.732 2 1.0137E-41 14363 20181213_JW_Orientia_Karp_1_2 283.66 204.62 36182000 7799800 10000000 15242000 0 0 0 3139600 0 9367 684;1631 8012 56796;56797;56798;56799;56800 36119;36120;36121;36122 36120 4 TSWAGAPVHLGQGQFLK Unmodified 1795.937 0.93695282 839 D3DVC4;P48681;Q2YDX4 NES Nestin yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 52.888 53.222 3 0.027308 19443 20181213_JW_Orientia_Karp_2_3 55.213 16.838 72507000 12475000 25557000 16348000 8636200 0 9107700 382270 0 9368 839 8013 56801;56802;56803;56804;56805;56806 36123 36123 1 TSYAQHQQVR Unmodified 1216.5949 0.59488324 363 H0Y9Y4;D6RG13;Q6NXR8;A8K4W0;P61247;D6R9B6;D6RAT0;B7Z3M5;H0Y8L7;D6RB09;E9PFI5;D6RAS7 RPS3A 40S ribosomal protein S3a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 16.83 17.13 2 0.0020926 2977 20181213_JW_Orientia_Karp_1_2 114.89 75.873 1248100 0 402000 764060 0 0 0 82025 0 9369 363 8014 56807;56808;56809;56810 36124;36125;36126 36125 3 TTAAFQQGK Unmodified 950.48214 0.48214489 1575 Q5TAL2;Q5TAL4;Q53G33;P09234 SNRPC U1 small nuclear ribonucleoprotein C yes no 0 0 0 0 By MS/MS By matching 1 1 21.976 22.557 2 0.0028895 3920 20181213_JW_Orientia_Karp_2_2 114.28 64.241 963060 0 0 0 0 634250 0 0 328810 9370 1575 8015 56811;56812 36127 36127 1 TTAENEFVMLK Oxidation (M) 1297.6224 0.62240312 799;679 B4E1T1;B4DL32;H0YIN9;CON__P13647;P13647;F8W0C6 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 46.214 46.551 2 2.0739E-05 15643 20181213_JW_Orientia_Karp_2_1 166.66 98.76 102730000 14089000 15275000 0 23676000 20559000 13324000 4318300 11483000 + 9371 679;799 8016 56813;56814;56815;56816;56817;56818;56819 36128;36129;36130;36131;36132;36133;36134 36130 418 7 TTAEYQVLVEGVPSPR Unmodified 1744.8996 0.89956426 274 B7Z8Y6;A0A075B738;A0A075B727;A0A075B728;A0A075B737 PECAM1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.516 58.776 2 4.6529E-09 24239 20181213_JW_Orientia_Karp_1_3 186.29 125.77 78413000 23981000 19974000 21807000 0 6481800 4090000 0 2079300 9372 274 8017 56820;56821;56822;56823;56824;56825 36135;36136;36137;36138;36139;36140;36141 36138 7 TTAGSVDWTDQLGLR Unmodified 1618.7951 0.79509919 106 A0A024R542;Q9C0C2;B3KXS7;Q9C0C2-2 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 61.76 61.95 2 0.032907 26257 20181213_JW_Orientia_Karp_1_3 84.352 44.198 36485000 12093000 7038200 6294100 0 6768000 4292100 0 0 9373 106 8018 56826;56827;56828;56829;56830 36142 36142 1 TTDETILSLSQSLAK Unmodified 1605.8461 0.84613171 1361 Karp_01814 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 3 63.954 64.181 2;3 1.8689E-13 28254 20181213_JW_Orientia_Karp_1_1 198.48 108.25 90726000 28766000 22070000 13403000 2220400 14085000 5428200 1564800 3188200 9374 1361 8019 56831;56832;56833;56834;56835;56836;56837;56838;56839;56840;56841 36143;36144;36145;36146;36147;36148;36149;36150 36143 8 TTDGYLLR Unmodified 937.4869 0.48689592 363 H0Y9Y4;D6RG13;Q6NXR8;A8K4W0;P61247;D6R9B6;D6RAT0;B7Z3M5;H0Y8L7;D6RB09;E9PFI5;D6RAS7;D6RED7 RPS3A 40S ribosomal protein S3a yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 41.181 41.511 2 0.0047583 13752 20181213_JW_Orientia_Karp_1_2 126.28 75.646 49396000 20483000 9503400 13370000 1492900 0 0 4546200 0 9375 363 8020 56842;56843;56844;56845;56846 36151 36151 1 TTDVTGEIALLSGK Unmodified 1403.7508 0.75077476 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 60.957 61.277 2 1.2799E-58 23813 20181213_JW_Orientia_Karp_2_1 272.32 197.4 5290600000 1451200000 902370000 1521200000 158470000 651910000 337550000 51324000 216590000 9376 1176;1244 8021 56847;56848;56849;56850;56851;56852;56853;56854 36152;36153;36154;36155;36156;36157;36158;36159;36160;36161;36162;36163 36157 12 TTDYVIASVIGK Unmodified 1265.6867 0.68671794 1100 Karp_00268 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.038 58.339 2 6.3404E-23 24247 20181213_JW_Orientia_Karp_1_2 232.88 173.53 583170000 161930000 114510000 81744000 55231000 65942000 47525000 0 56300000 9377 1100 8022 56855;56856;56857;56858;56859;56860;56861 36164;36165;36166;36167;36168;36169;36170;36171 36166 8 TTFEDLIQR Unmodified 1121.5717 0.57168818 256 H7BXG7;A0A024RDH6;A0A024RDD3;D6REX3;O94979-7;O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;H0YAF5;H0Y8W8 SEC31A;SEC31L1 Protein transport protein Sec31A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 55.828 56.111 2 0.00074282 22485 20181213_JW_Orientia_Karp_1_3 150.36 77.572 48143000 23215000 0 13532000 0 0 0 11396000 0 9378 256 8023 56862;56863;56864 36172;36173;36174 36173 3 TTFEIVR Unmodified 864.47052 0.47051757 1243 Karp_00910 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 43.801 44.103 2 0.011997 15146 20181213_JW_Orientia_Karp_1_2 124.59 55.679 456790000 229280000 106940000 67104000 0 24467000 9994600 18682000 324310 9379 1243 8024 56865;56866;56867;56868;56869;56870;56871 36175;36176;36177 36175 3 TTFTNSALLEVPHTER Unmodified 1814.9163 0.91627696 1062 Karp_00006 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1 1 1 49.68 50.026 2;3 0.0071534 16853 20181213_JW_Orientia_Karp_3_1 99.732 53.14 503760000 160790000 113190000 111370000 50325000 26454000 36088000 202010 5340500 9380 1062 8025 56872;56873;56874;56875;56876;56877;56878;56879;56880;56881 36178;36179;36180;36181;36182 36182 5 TTGADIVGSLDIIEAIK Unmodified 1714.9353 0.93528106 1173 Karp_00627 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 73.956 73.988 2 1.1287E-100 30185 20181213_JW_Orientia_Karp_2_3 304.93 154.84 430360000 155210000 128020000 97625000 4353600 9777900 6160400 29114000 97696 9381 1173 8026 56882;56883;56884;56885;56886;56887;56888;56889 36183;36184;36185;36186;36187;36188;36189 36188 7 TTGFGMIYDSLDYAK Oxidation (M) 1696.7654 0.76543854 876 E7ETK0;P62847-2;P62847-3;P62847;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 61.612 61.9 2 0.001802 26871 20181213_JW_Orientia_Karp_1_1 122.55 86.227 38571000 21489000 13467000 0 0 1978900 0 1635100 0 9382 876 8027 56890;56891;56892;56893 36190;36191;36192;36193 36190 498 4 TTGIVMDSGDGVTHTVPIYEGYALPHAILR Oxidation (M) 3198.6019 0.60194904 1717;1743;1835 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q562Z7;Q562Y6;Q562X9;Q562S0;Q562N8;Q562N0;Q562L5;Q562R8;Q562P0;Q562L9;A0AUL6;Q562Y8;Q562N2;Q562M5;Q562Z6;P63261;I3L3I0;I3L1U9;I3L4N8;Q562M3 PS1TP5BP1;ACTB;ACTG1;ACT Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 3 2 2 62.424 62.689 3;4 3.041E-05 26862 20181213_JW_Orientia_Karp_1_2 84.312 61.103 1062900000 330270000 240020000 164740000 3760000 132690000 78109000 16492000 96815000 9383 1717;1743;1835 8028 56894;56895;56896;56897;56898;56899;56900;56901;56902;56903;56904;56905;56906;56907;56908;56909;56910;56911 36194;36195;36196;36197;36198;36199;36200;36201;36202;36203 36197 1342 9 TTGIVMDSGDGVTHTVPIYEGYALPHAILR Unmodified 3182.607 0.60703441 1717;1743;1835 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q562Z7;Q562Y6;Q562X9;Q562S0;Q562N8;Q562N0;Q562L5;Q562R8;Q562P0;Q562L9;A0AUL6;Q562Y8;Q562N2;Q562M5;Q562Z6;P63261;I3L3I0;I3L1U9;I3L4N8;Q562M3 PS1TP5BP1;ACTB;ACTG1;ACT Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 64.551 64.723 3;4 9.1992E-06 28636 20181213_JW_Orientia_Karp_1_1 94.072 78.321 1571400000 409900000 372840000 604210000 11547000 87048000 58842000 0 27050000 9384 1717;1743;1835 8028 56912;56913;56914;56915;56916;56917;56918;56919;56920;56921;56922;56923 36204;36205;36206;36207;36208;36209;36210;36211;36212;36213 36204 10 TTGLVGLAVCNTPHER Unmodified 1723.8676 0.86755262 143 A0A024R745;Q16718;F8WAS3 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 0 0 0 0 By MS/MS By matching 1 1 44.348 44.849 3 0.02333 15696 20181213_JW_Orientia_Karp_1_2 59.607 31.638 17163000 0 14491000 0 0 0 0 2671900 0 9385 143 8029 56924;56925 36214 36214 1 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR Unmodified 3410.5638 0.56376843 1613 P20700;B4DZT3 LMNB1 Lamin-B1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 69.437 69.57 3 0.0197 31523 20181213_JW_Orientia_Karp_1_1 44.6 24.145 40187000 20904000 13197000 0 6086200 0 0 0 0 9386 1613 8030 56926;56927;56928 36215 36215 1 TTITCLSEDDAYSR Unmodified 1630.7145 0.71446561 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.388 45.732 2 4.9531E-46 16003 20181213_JW_Orientia_Karp_1_2 265 209.92 145950000 33507000 31144000 36670000 10477000 0 9847700 11449000 12859000 9387 1273 8031 56929;56930;56931;56932;56933;56934;56935 36216;36217;36218;36219;36220;36221;36222;36223 36217 8 TTITTTTTSSSGLGSPMIVGSPR Oxidation (M) 2267.1315 0.13149104 98 C9JJV6;C9JZL8;C9J5M0;C9JC07;B4DG42;A0A024R4N0;Q96S97 MYADM;hCG_1640809 Myeloid-associated differentiation marker yes no 0 0 1 0 By MS/MS 1 51.222 51.421 2 1.9237E-14 19492 20181213_JW_Orientia_Karp_1_3 175.27 114.97 5271900 0 0 5271900 0 0 0 0 0 9388 98 8032 56936 36224 36224 102 1 TTLQVDTLNAELAAER Unmodified 1743.9003 0.90029254 944 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 57.494 57.81 2 2.6321E-14 23637 20181213_JW_Orientia_Karp_1_3 209.22 107.17 119190000 53273000 25520000 31152000 4168200 0 4999000 78565 0 9389 944 8033 56937;56938;56939;56940;56941;56942 36225;36226;36227 36227 3 TTPDVIFVFGFR Unmodified 1397.7343 0.73433683 876 E7ETK0;P62847-2;P62847-3;P62847;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 74.169 74.184 2 0.014014 34420 20181213_JW_Orientia_Karp_1_1 91.265 47.457 44055000 33057000 0 10326000 671790 0 0 0 0 9390 876 8034 56943;56944;56945 36228 36228 1 TTPIEAASSGAR Unmodified 1159.5833 0.5833155 627 B4DQ92 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 33.124 33.307 2 0.031061 9949 20181213_JW_Orientia_Karp_1_1 79.07 43.632 13756000 6702900 4036100 3017200 0 0 0 0 0 9391 627 8035 56946;56947;56948 36229 36229 1 TTPSVVAFTADGER Unmodified 1449.71 0.70997257 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;D6RA73;D6RJI2 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.197 50.513 2 0.0020414 18882 20181213_JW_Orientia_Karp_1_3 125.36 94.746 140800000 27634000 38788000 32574000 20512000 16128000 0 5164200 0 9392 721 8036 56949;56950;56951;56952;56953;56954 36230;36231 36231 2 TTPSYVAFTDTER Unmodified 1486.694 0.69398816 1586;369 V9HW22;P11142;E9PKE3;Q53GZ6;B3KTV0;P11142-2;Q53HF2;E9PNE6;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65;A0A024R6B5;P54652;B3KUS2;Q53FC7;B3KSM6;B2R6X5;P17066;B4DNV4;P48741;A8K5I0;P08107-2;P08107;B4DFN9;Q59EJ3;B4DI39;B4DWK5;B4E1T6;B4DNX1 HEL-S-72p;HSPA8;HSPA2;HSPA6;HSPA7;HEL-S-103;HSPA1A Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1A no no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 48.905 49.155 2 5.7124E-08 17951 20181213_JW_Orientia_Karp_1_3 193.3 149.67 607690000 141760000 170100000 120210000 76677000 44263000 54681000 0 0 9393 1586;369 8037 56955;56956;56957;56958;56959;56960 36232;36233;36234 36232 3 TTQEQLAR Unmodified 945.48796 0.48795855 279 A1A5C4;A7BI36;Q9P2E9-3;Q9P2E9-2;Q9P2E9;F8W7S5;A1A5C5;B3KSG1 RRBP1 Ribosome-binding protein 1 yes no 0 0 0 0 By MS/MS By matching 1 1 21.29 21.566 2 0.030361 4572 20181213_JW_Orientia_Karp_1_1 82.426 30.171 1418000 1149100 0 0 0 0 0 268870 0 9394 279 8038 56961;56962 36235 36235 1 TTQFSCTLGEK Unmodified 1270.5864 0.58635197 871 E7DVW5;Q01469;I6L8B7 FABP5 Fatty acid-binding protein, epidermal yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 37.749 38.068 2 0.0040826 11461 20181213_JW_Orientia_Karp_3_1 109.16 62.73 14891000 3527500 2555600 0 0 1516100 714510 6119100 457830 9395 871 8039 56963;56964;56965;56966;56967;56968;56969 36236;36237;36238 36237 3 TTQQIDLQGPGPWGFR Acetyl (Protein N-term) 1841.906 0.90604662 1487 V9HW92;O00151 HEL-S-112;PDLIM1 PDZ and LIM domain protein 1 yes no 1 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 74.315 74.339 2 0.00019839 27625 20181213_JW_Orientia_Karp_3_1 176.99 119.84 72842000 20406000 12017000 24661000 0 0 0 15758000 0 9396 1487 8040 56970;56971;56972;56973 36239;36240 36240 1 TTSAGTGGMWR Oxidation (M) 1139.503 0.50295669 1716 P60468 SEC61B Protein transport protein Sec61 subunit beta yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 26.351 26.704 2 0.018465 6563 20181213_JW_Orientia_Karp_1_3 102.62 47.091 14371000 7706800 5862900 0 0 0 0 0 801330 9397 1716 8041 56974;56975;56976;56977 36241;36242 36242 1338 2 TTSGALFPSLVPGSR Acetyl (Protein N-term) 1530.8042 0.80420731 1813 Q68E00;Q16186;B4DMP7 DKFZp686G2045;ADRM1 Proteasomal ubiquitin receptor ADRM1 yes no 1 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 75.58 75.58 2 0.015603 35325 20181213_JW_Orientia_Karp_1_1 100.09 27.797 91257000 23015000 15602000 22914000 0 9151800 5571800 15002000 0 9398 1813 8042 56978;56979;56980;56981;56982;56983 36243;36244 36243 2 TTTAAAVASTGPSSR Unmodified 1376.6896 0.68957148 879 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;A0A024R2V0;Q86Y04;P27816-4;H0Y2V1;H7C4C5;F8W9U4;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 29.426 29.809 2 0.00042938 7808 20181213_JW_Orientia_Karp_1_2 142.76 79.48 51429000 10381000 8812500 11374000 7495200 2653400 3910800 5560400 1241600 9399 879 8043 56984;56985;56986;56987;56988;56989;56990;56991 36245;36246 36246 2 TTTLPVEFK Unmodified 1034.5648 0.56481189 493 B3KWK5;B3KRV6;Q6FHL8;Q5M8T4;B2RCP7;P29279;P29279-2 CTGF Connective tissue growth factor yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 50.148 50.475 2 0.0028442 17889 20181213_JW_Orientia_Karp_2_3 114.5 30 114370000 22503000 18133000 12807000 38328000 0 20632000 0 1965500 9400 493 8044 56992;56993;56994;56995;56996;56997 36247;36248;36249;36250 36249 4 TTTLSGTAPAAGVVPSR Unmodified 1584.8471 0.84713476 879 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;A0A024R2V0;Q86Y04;P27816-4;H0Y2V1;H7C4C5;F8W9U4;B5MEG9;B4DSQ1 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.646 45.966 2 2.557E-16 15568 20181213_JW_Orientia_Karp_2_3 195.71 133.55 196570000 33183000 34312000 39376000 24951000 29596000 16617000 5862900 12675000 9401 879 8045 56998;56999;57000;57001;57002;57003;57004;57005 36251;36252;36253;36254;36255;36256 36253 6 TTTTNTQVEGDDEAAFLER Unmodified 2096.9498 0.94982151 622 B4DPW5;B7Z6G4;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682;E9PGZ1;Q9NYG1;C9J813;Q05DR4;Q6P707;Q6PJM5;C9JEK3 CALD1 Caldesmon yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.22 50.566 2 1.3123E-55 17770 20181213_JW_Orientia_Karp_2_1 270.51 178.27 72120000 7626500 10483000 12303000 13085000 9685600 7524800 8061300 3350000 9402 622 8046 57006;57007;57008;57009;57010;57011;57012;57013 36257;36258;36259;36260;36261;36262;36263;36264 36260 8 TTVALHAVAECQK Unmodified 1426.7238 0.7238485 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 31.411 31.701 2;3 0.00043302 8782 20181213_JW_Orientia_Karp_1_2 155.33 117.78 74504000 14417000 35501000 16912000 2573300 709170 1769200 2622000 0 9403 1245 8047 57014;57015;57016;57017;57018;57019;57020;57021;57022;57023 36265;36266;36267;36268;36269 36267 5 TTVAMHLIAALLDNNLK Unmodified 1837.0132 0.013154229 1348 Karp_01524 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 72.758 72.808 3 0.0014797 26875 20181213_JW_Orientia_Karp_3_1 102.63 62.352 16946000 0 0 0 0 0 0 16946000 0 9404 1348 8048 57024;57025 36270;36271 36271 2 TTVAMHLIAALLDNNLK Deamidation (NQ) 1837.9972 0.99716981 1348 Karp_01524 yes yes 0 1 0 0 By MS/MS 1 72.93 72.98 3 0.03108 26960 20181213_JW_Orientia_Karp_3_1 77.746 31.338 8680400 0 0 0 0 0 0 8680400 0 9405 1348 8048 57026 36272 36272 797;798 1 TTVDLHMIVLANK Oxidation (M) 1469.7912 0.79119978 1449 Karp_02529 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 48.961 49.277 2 0.041641 18290 20181213_JW_Orientia_Karp_1_2 68.847 17.319 28457000 9035700 8934000 5817600 0 1423600 1498100 130920 1616500 9406 1449 8049 57027;57028;57029;57030;57031;57032;57033 36273 36273 1 TTVDLHMIVLANK Unmodified 1453.7963 0.79628516 1449 Karp_02529 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 55.414 55.681 3 0.0035751 22190 20181213_JW_Orientia_Karp_1_3 99.539 68.191 81689000 34190000 15446000 7699500 2775400 8987900 12591000 0 0 9407 1449 8049 57034;57035;57036;57037;57038;57039 36274;36275;36276 36274 3 TTVISAVGTIVK Unmodified 1187.7125 0.71253876 169 A0A024R8R0;J3QQJ0;Q9UHR5-2;Q9UHR5;Q659G6 SAP30BP;DKFZp586L2022 SAP30-binding protein yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 54.531 54.866 2 0.00096491 20095 20181213_JW_Orientia_Karp_2_2 134.57 92.375 17911000 2052800 6552600 0 2639400 2425300 4069200 0 172090 9408 169 8050 57040;57041;57042;57043;57044;57045 36277 36277 1 TVAGGAWTYNTTSAVTVK Unmodified 1825.921 0.92102798 764 C9J4Z3;P61513 RPL37A 60S ribosomal protein L37a yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 51.009 51.472 2 2.5629E-17 20121 20181213_JW_Orientia_Karp_1_1 215.87 151.14 23882000 0 13643000 0 2287800 3423800 0 3371400 1156200 9409 764 8051 57046;57047;57048;57049;57050;57051;57052;57053 36278;36279;36280;36281;36282 36278 5 TVEDAAIMLETMMGYDEK Oxidation (M) 2061.8945 0.89448016 1318 Karp_01280 yes yes 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 70.343 70.467 2 1.6143E-06 31648 20181213_JW_Orientia_Karp_1_3 151.54 112.75 6490700 0 2210200 4280500 0 0 0 0 0 9410 1318 8052 57054;57055;57056 36283;36284 36284 879 2 TVEDLLSIK Unmodified 1016.5754 0.57537657 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.686 57.988 2 0.00013985 24016 20181213_JW_Orientia_Karp_1_2 186.76 99.932 252220000 49238000 99967000 39865000 5639300 23581000 28581000 0 5349800 9411 1168 8053 57057;57058;57059;57060;57061;57062;57063 36285;36286;36287;36288;36289;36290;36291 36286 7 TVEEAENIAVTSGVVR Unmodified 1672.8632 0.86317875 1527 Q6FHG5;O76070;A9XXE1 SNCG Gamma-synuclein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 50.996 51.341 2 8.9697E-63 19561 20181213_JW_Orientia_Karp_1_3 320.48 218.44 187250000 39879000 42521000 26805000 16173000 15357000 13532000 26983000 6005400 9412 1527 8054 57064;57065;57066;57067;57068;57069;57070;57071 36292;36293;36294;36295;36296;36297 36294 6 TVEFLPSDNEIAQR Deamidation (NQ) 1618.7839 0.7838658 1449 Karp_02529 yes yes 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.586 57.888 2 0.0015908 21809 20181213_JW_Orientia_Karp_2_2 138.42 76.863 165310000 56985000 24806000 39229000 11045000 18789000 10354000 0 4107300 9413 1449 8055 57072;57073;57074;57075;57076;57077;57078 36298;36299;36300;36301;36302;36303;36304 36302 977 7 TVEFLPSDNEIAQR Unmodified 1617.7999 0.79985021 1449 Karp_02529 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.65 55.977 2 1.3997E-13 20847 20181213_JW_Orientia_Karp_2_1 210.44 168.1 799460000 165890000 218680000 246590000 64389000 94439000 0 0 9472300 9414 1449 8055 57079;57080;57081;57082;57083;57084 36305;36306;36307;36308;36309 36306 5 TVEGAGSIAAATGFVK Unmodified 1477.7777 0.77765821 874 H6UYS7;Q4W5L2;H6UYS5;E7EPV7;H6UYS0;P37840-2;P37840-3;P37840 SNCA Alpha-synuclein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.899 54.22 2 2.1425E-60 18700 20181213_JW_Orientia_Karp_3_2 291.22 224.26 181710000 51991000 30260000 38917000 16393000 21093000 15150000 7911100 0 9415 874 8056 57085;57086;57087;57088;57089;57090;57091;57092 36310;36311;36312;36313;36314;36315;36316;36317 36317 8 TVEIPDPVEAGEEVK Unmodified 1610.8039 0.80393254 582 B4DIT7;V9HWG3;P21980;B4DTN7;Q6DKH2 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 56.261 56.618 2 0.0027908 21286 20181213_JW_Orientia_Karp_2_1 117.95 85.695 269970000 69827000 84371000 61542000 23941000 18051000 10288000 1234700 712710 9416 582 8057 57093;57094;57095;57096;57097;57098;57099;57100 36318;36319;36320;36321 36321 4 TVEVFDVYTGDK Unmodified 1371.6558 0.65581174 1345 Karp_01521 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 56.395 56.725 2 0.00049049 23556 20181213_JW_Orientia_Karp_1_1 150.15 117.4 91980000 27878000 29241000 19431000 0 8062800 7137600 140730 88262 9417 1345 8058 57101;57102;57103;57104;57105;57106;57107 36322 36322 1 TVFATFQNVEGLNK Unmodified 1566.8042 0.80420731 1180 Karp_00655 yes yes 0 0 0 0 By MS/MS 1 58.888 58.888 2 1.0456E-10 24921 20181213_JW_Orientia_Karp_1_1 215.04 148.47 0 0 0 0 0 0 0 0 0 9418 1180 8059 57108 36323 36323 1 TVFDEAIR Unmodified 949.4869 0.48689592 302 A4D2P2;A4D2P1;A4D2P0;P63000;P63000-2;A0A024R9T5;P60763;J3KSC4;J3QLK0;B1AH77;B1AH80;A0A024R1P2;P15153 RAC1;hCG_20693;RAC3;RAC2 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3;Ras-related C3 botulinum toxin substrate 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 47.001 47.294 2 0.0066635 16987 20181213_JW_Orientia_Karp_1_2 114.5 34.269 103930000 35611000 36219000 21955000 3023900 0 5229100 0 1893200 9419 302 8060 57109;57110;57111;57112;57113;57114 36324;36325;36326;36327 36325 4 TVGQLYK Unmodified 807.44905 0.44905385 47;944;919 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4;M0QY43;B3KWH4 MYH9;MYH10;MYH14 Myosin-9;Myosin-10;Myosin-14 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 29.896 30.279 2 0.011712 8073 20181213_JW_Orientia_Karp_1_2 121.29 35.933 192560000 36792000 86723000 46726000 1535200 2452600 1239000 13808000 3281200 9420 47;944;919 8061 57115;57116;57117;57118;57119;57120;57121;57122 36328;36329;36330;36331 36329 4 TVIFVATGEGK Unmodified 1120.6128 0.61282471 1485 M0R261;O95336 PGLS 6-phosphogluconolactonase yes no 0 0 0 0 By MS/MS 1 47.639 47.639 2 0.026388 17590 20181213_JW_Orientia_Karp_1_1 92.538 42.498 0 0 0 0 0 0 0 0 0 9421 1485 8062 57123 36332 36332 1 TVIIEQSWGSPK Unmodified 1343.7085 0.70851601 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;Q53SE2;E7ESH4;E7EXB4;C9JL25;P10809-2;C9JL19;C9JCQ4 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 49.978 50.286 2 0.00033775 19443 20181213_JW_Orientia_Karp_1_1 155.33 79.682 423150000 122860000 108090000 79256000 46415000 29017000 37029000 484100 0 9422 81 8063 57124;57125;57126;57127;57128;57129;57130 36333;36334 36333 2 TVIIPEGNTSDLEDIPNSIK Deamidation (NQ) 2155.0896 0.089609453 1190 Karp_00705 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 64.452 64.568 2 0.001465 27886 20181213_JW_Orientia_Karp_1_3 112.12 62.698 26373000 12012000 5834000 8527300 0 0 0 0 0 9423 1190 8064 57131;57132;57133 36335;36336;36337 36337 602 3 TVIIPEGNTSDLEDIPNSIK Unmodified 2154.1056 0.10559387 1190 Karp_00705 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 64.825 65.007 2 8.2302E-17 28053 20181213_JW_Orientia_Karp_1_3 191.15 137.92 62599000 19812000 14032000 19541000 0 7882300 0 0 1331900 9424 1190 8064 57134;57135;57136;57137;57138;57139 36338;36339;36340;36341 36340 4 TVLEDLPIK Unmodified 1026.5961 0.59611202 1261 Karp_01021 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 56.656 56.923 2 0.0021502 23765 20181213_JW_Orientia_Karp_1_1 117.81 67.204 118000000 28955000 19845000 26452000 6974100 13282000 22496000 0 0 9425 1261 8065 57140;57141;57142;57143;57144;57145 36342;36343;36344 36342 3 TVLELMNPEAQLPQVYPFAADLYQK Unmodified 2877.4623 0.46226766 235 A4QPB0;A0A024RC65;P46940;Q6P1N4 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 0 By MS/MS By matching 1 1 75.816 75.84 3 0.010431 35179 20181213_JW_Orientia_Karp_1_3 54.728 21.541 7740200 0 0 6136400 0 0 0 1603800 0 9426 235 8066 57146;57147 36345 36345 1 TVLELQYVLDK Unmodified 1319.7337 0.73366813 901 E9PLA9;Q14444-2;Q14444;G3V153;B3KXU8 CAPRIN1 Caprin-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.863 64.099 2 0.0014754 25181 20181213_JW_Orientia_Karp_2_3 133.42 90.55 35344000 11945000 7564500 0 0 7303300 6503700 48654 1978500 9427 901 8067 57148;57149;57150;57151;57152;57153;57154;57155 36346;36347;36348;36349;36350;36351 36350 6 TVLGTPEVLLGALPGAGGTQR Unmodified 2006.116 0.1160394 885 E9KL44;P40939;P40939-2 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 72.389 72.472 3 0.023714 32953 20181213_JW_Orientia_Karp_1_3 51.524 26.731 57695000 31031000 14913000 11751000 0 0 0 0 0 9428 885 8068 57156;57157;57158 36352;36353 36353 2 TVLIMELINNVAK Unmodified 1456.8323 0.83233632 1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W079;F8W0P7;H0YI37 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS 1 74.087 74.135 2 0.016382 30178 20181213_JW_Orientia_Karp_2_1 124.42 0 0 0 0 0 0 0 0 0 0 9429 1560 8069 57159 36354 36354 1 TVLSNVQEELDR Unmodified 1401.71 0.70997257 142 J3KRI4;A0A024R6Z0;O43237-2;O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 51.818 52.145 2 0.020977 18068 20181213_JW_Orientia_Karp_3_1 96.334 61.156 43835000 12175000 11317000 11430000 0 5090300 0 3176600 646400 9430 142 8070 57160;57161;57162;57163;57164;57165 36355;36356 36356 2 TVMENFVAFVDK Oxidation (M) 1414.6803 0.68025235 792 CON__P02769 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 1 3 3 3 57.984 58.33 2;3 2.7392E-17 20553 20181213_JW_Orientia_Karp_3_2 223.77 136.89 1962500000 285750000 402040000 273420000 257320000 279560000 360120000 3100300 101140000 + 9431 792 8071 57166;57167;57168;57169;57170;57171;57172;57173;57174;57175;57176;57177;57178;57179;57180;57181;57182;57183;57184 36357;36358;36359;36360;36361;36362;36363;36364;36365 36365 458 9 TVMENFVAFVDK Oxidation (M);Deamidation (NQ) 1415.6643 0.66426794 792 CON__P02769 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 61.536 61.866 2 0.0017917 26215 20181213_JW_Orientia_Karp_1_3 130.69 103.25 170670000 41445000 16974000 33276000 15790000 56488000 0 3947600 2746600 + 9432 792 8071 57185;57186;57187;57188;57189;57190;57191 36366;36367;36368;36369;36370;36371;36372 36368 271 458 7 TVMENFVAFVDK Unmodified 1398.6853 0.68533773 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.21 67.386 2 3.1141E-31 26811 20181213_JW_Orientia_Karp_2_3 254.07 194.14 1813500000 413340000 175680000 316110000 0 443350000 244940000 0 220070000 + 9433 792 8071 57192;57193;57194;57195;57196;57197;57198 36373;36374;36375;36376;36377;36378;36379 36378 7 TVMENFVAFVDK Deamidation (NQ) 1399.6694 0.66935331 792 CON__P02769 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 2 2 2 1 70.098 70.245 2 9.7931E-05 27638 20181213_JW_Orientia_Karp_2_1 166.11 120.11 198280000 23804000 26619000 34915000 12154000 23311000 22162000 42312000 13005000 + 9434 792 8071 57199;57200;57201;57202;57203;57204;57205;57206;57207;57208;57209;57210;57211;57212;57213;57214 36380;36381;36382;36383;36384;36385;36386;36387;36388 36383 271 8 TVMVIEAFK Unmodified 1036.5627 0.5627034 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 56.45 56.72 2 0.0059617 22859 20181213_JW_Orientia_Karp_1_3 102.07 59.958 75327000 25237000 20441000 18397000 4248200 0 7003900 0 0 9435 1118 8072 57215;57216;57217;57218;57219 36389;36390 36390 2 TVMVIEAFK Oxidation (M) 1052.5576 0.55761802 1118 Karp_00308 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 49.937 50.186 2 0.0027299 18676 20181213_JW_Orientia_Karp_1_3 112.41 76.016 95718000 26739000 29262000 18912000 12161000 3899200 4745100 0 0 9436 1118 8072 57220;57221;57222;57223;57224;57225 36391;36392;36393;36394 36392 642 4 TVNELQNLTAAEVVVPR Unmodified 1852.0054 0.005426314 836 D3DTW3;Q9NZI8-2;Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 63.568 63.757 2 0.0042008 27979 20181213_JW_Orientia_Karp_1_1 118.76 71.808 14429000 4884500 4998000 3600400 0 0 0 0 946520 9437 836 8073 57226;57227;57228;57229 36395 36395 1 TVNELSANLVSDHYQIQGVFDGIHK Unmodified 2783.3879 0.38785716 1112 Karp_00294 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 60.26 60.58 4 0.0012142 23459 20181213_JW_Orientia_Karp_2_1 82.761 28.304 324650000 78109000 124640000 41434000 15967000 25273000 29007000 8276100 1944400 9438 1112 8074 57230;57231;57232;57233;57234;57235;57236;57237 36396;36397;36398;36399;36400;36401;36402 36399 7 TVNITNSFK Unmodified 1022.5397 0.53965977 1337 Karp_01411 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.547 40.877 2 0.0061656 12350 20181213_JW_Orientia_Karp_3_2 101.66 37.097 356360000 125750000 59371000 49283000 28238000 26858000 0 63941000 2923200 9439 1337 8075 57238;57239;57240;57241;57242;57243;57244 36403;36404;36405;36406;36407;36408;36409 36409 7 TVNKKSQLMCQQMYMGEK 2 Oxidation (M);2 Deamidation (NQ) 2236.9836 0.98364629 1798 Q2TB61;Q14587-2;Q14587 ZNF268 Zinc finger protein 268 yes no 0 2 2 2 By MS/MS 1 32.867 33.118 3 0.036742 8331 20181213_JW_Orientia_Karp_2_2 48.216 19.589 7392100 0 0 0 0 7392100 0 0 0 9440 1798 8076 57245 36410 36410 1989 1 TVNVVQFEPSK Unmodified 1246.6558 0.65575216 1667 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 47.17 47.471 2 0.00029885 17015 20181213_JW_Orientia_Karp_1_3 150.04 85.313 41837000 10845000 13188000 13367000 1478700 0 0 0 2957400 9441 1667 8077 57246;57247;57248;57249;57250 36411 36411 1 TVPPAVTGITFLSGGQSEEEASINLNAINK Unmodified 3056.5666 0.56660939 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;H3BR68 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS 1 72.724 72.724 3 0.040587 33451 20181213_JW_Orientia_Karp_1_1 33.317 8.104 9747100 9747100 0 0 0 0 0 0 0 9442 1546 8078 57251 36412 36412 1 TVQGSGHQEHINIHK Unmodified 1683.8441 0.84411507 117 A0A024R5M3;Q53HG7;Q14247-3;Q14247;Q14247-2;Q76MU0;H7C314 CTTN;EMS1 Src substrate cortactin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 18.83 19.063 3 0.027361 3644 20181213_JW_Orientia_Karp_1_1 56.29 29.321 8569400 1868100 1113600 1289100 1271100 0 1378700 1648900 0 9443 117 8079 57252;57253;57254;57255;57256;57257 36413 36413 1 TVQLTSSELESTLETLK Unmodified 1877.9834 0.98335347 635 B4DSR0;E5KNY5;P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 0 0 0 0 By matching By MS/MS 1 1 66.65 66.775 2 0.017046 29459 20181213_JW_Orientia_Karp_1_2 85.976 43.767 8006600 3333000 4673600 0 0 0 0 0 0 9444 635 8080 57258;57259 36414 36414 1 TVQSLEIDLDSMR Oxidation (M) 1521.7345 0.73447277 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9;CON__H-INV:HIT000015463 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 54.13 54.457 2 4.3047E-08 22076 20181213_JW_Orientia_Karp_1_1 193.49 148.47 83212000 29717000 18931000 15238000 7270700 8704100 0 0 3352600 9445 208 8081 57260;57261;57262;57263;57264;57265 36415;36416;36417;36418;36419 36415 160 5 TVQSLEIDLDSMR Unmodified 1505.7396 0.73955814 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9;CON__H-INV:HIT000015463 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 61.18 61.48 2 0.0010207 25965 20181213_JW_Orientia_Karp_1_3 140.45 73.858 40557000 11575000 7351800 16825000 1579600 0 2462900 763100 0 9446 208 8081 57266;57267;57268;57269;57270;57271 36420 36420 1 TVSDSSEDK Unmodified 966.41418 0.41418448 1166 Karp_00620 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 6.0408 6.3774 2 0.022793 1152 20181213_JW_Orientia_Karp_2_1 82.426 44.265 4271800 0 123920 0 287700 753890 1090800 0 2015500 9447 1166 8082 57272;57273;57274;57275;57276;57277 36421;36422 36421 2 TVSLGAGAKDELHIVEAEAMNYEGSPIK Unmodified 2928.4539 0.45388781 1562 P06748-2;P06748;A4ZU86;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 1 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 61.372 61.613 4 0.040838 24019 20181213_JW_Orientia_Karp_2_1 41.047 13.966 38350000 14608000 7983200 6361600 3843800 0 5553000 0 0 9448 1562 8083 57278;57279;57280;57281;57282 36423;36424 36424 0 TVSSSNGGESSSR Unmodified 1253.5484 0.54838655 1922 Q8WW12-2;Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein yes no 0 0 0 0 By matching By MS/MS 1 1 35.735 36.166 2 0.040577 9927 20181213_JW_Orientia_Karp_3_2 92.239 9.4884 15649000 0 0 0 0 0 3119100 0 12530000 9449 1922 8084 57283;57284 36425 36425 0 TVTAMDVVYALK Oxidation (M) 1325.6901 0.69008876 447 B2R4R0;P62805;Q0VAS5 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 6 4 5 1 5 4 57.873 58.194 2 1.9486E-16 20582 20181213_JW_Orientia_Karp_2_1 211.27 133.98 16720000000 5986200000 3968600000 5520300000 407390000 489000000 214130000 53323000 81117000 9450 447 8085 57285;57286;57287;57288;57289;57290;57291;57292;57293;57294;57295;57296;57297;57298;57299;57300;57301;57302;57303;57304;57305;57306;57307;57308;57309;57310;57311;57312;57313;57314;57315;57316;57317;57318;57319 36426;36427;36428;36429;36430;36431;36432;36433;36434;36435;36436;36437;36438;36439;36440;36441;36442;36443;36444;36445;36446;36447;36448;36449;36450;36451;36452 36442 295 26 TVTAMDVVYALK Unmodified 1309.6952 0.69517413 447 B2R4R0;P62805;Q0VAS5 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 1 1 2 2 65.017 65.208 2 1.0683E-22 24892 20181213_JW_Orientia_Karp_2_2 227.27 168.83 9441000000 3713700000 3157900000 1900100000 0 183690000 270330000 4875500 210320000 9451 447 8085 57320;57321;57322;57323;57324;57325;57326;57327;57328;57329;57330;57331;57332;57333;57334 36453;36454;36455;36456;36457;36458;36459;36460;36461;36462;36463;36464;36465;36466;36467;36468 36463 16 TVTAMDVVYALKR Oxidation (M) 1481.7912 0.79119978 447 B2R4R0;P62805;Q0VAS5 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 1 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 48.804 49.079 3 0.025605 18101 20181213_JW_Orientia_Karp_1_2 57.567 24.375 99744000 35163000 36017000 20006000 8556900 0 0 0 0 9452 447 8086 57335;57336;57337;57338 36469;36470 36470 295 2 TVTAMDVVYALKR Unmodified 1465.7963 0.79628516 447 B2R4R0;P62805;Q0VAS5 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 56.084 56.367 3 0.033776 23380 20181213_JW_Orientia_Karp_1_1 75.739 42.535 282250000 154400000 32095000 73282000 0 4298200 15537000 2636300 0 9453 447 8086 57339;57340;57341;57342;57343;57344 36471;36472;36473 36471 3 TVTATFGYPFR Unmodified 1258.6346 0.63462279 293 C9JYN0;A8K865;A4D0R1;Q16563-2;Q16563 SYPL1;SYPL Synaptophysin-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 57.386 57.688 2 8.2244E-06 23575 20181213_JW_Orientia_Karp_1_3 186.25 141.09 63193000 21320000 13186000 15246000 2385000 4328400 4319800 0 2408200 9454 293 8087 57345;57346;57347;57348;57349;57350;57351 36474;36475;36476;36477;36478 36476 5 TVTNAVVTVPAYFNDSQR Unmodified 1980.9905 0.99050453 1586 V9HW22;P11142;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PI65 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 59.965 60.206 2;3 3.515E-17 22987 20181213_JW_Orientia_Karp_2_2 200.71 140.17 149740000 34702000 13661000 47843000 8729500 23859000 20940000 0 0 9455 1586 8088 57352;57353;57354;57355;57356;57357;57358;57359;57360;57361;57362 36479;36480;36481;36482;36483 36482 5 TVTNAVVTVPAYFNDSQR Deamidation (NQ) 1981.9745 0.97452012 1586 V9HW22;P11142;Q53GZ6;Q96IS6;B3KTV0;P11142-2;Q53HF2;E9PN89;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PI65 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 1 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 3 2 1 1 1 62.724 62.914 2;3 0.002015 25432 20181213_JW_Orientia_Karp_1_2 109.67 68.867 80301000 27237000 25697000 18490000 407270 4875400 3594700 0 0 9456 1586 8088 57363;57364;57365;57366;57367;57368;57369;57370;57371;57372 36484;36485;36486;36487 36484 1062;1063 4 TVTQMNDISAIIKSKMIQR 2 Oxidation (M);3 Deamidation (NQ) 2211.1127 0.11266986 1473 L8ECF2 CEP350 yes yes 0 3 2 2 By MS/MS By matching 1 1 23.063 23.313 4 0.027701 5257 20181213_JW_Orientia_Karp_2_1 52.522 18.575 261860000 0 0 0 154750000 0 107100000 0 0 9457 1473 8089 57373;57374 36488 36488 999;1891;1892 1094;1095 0 TVVAGSSDAAQK Unmodified 1132.5724 0.57241646 1536 V9HW53;O95865;Q5SSV3;Q5SRR8;H0Y7N1 HEL-S-277;DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 21.913 22.34 2 0.016359 4354 20181213_JW_Orientia_Karp_2_3 88.134 33.022 3725000 0 1750600 0 612480 309950 324810 383750 343370 9458 1536 8090 57375;57376;57377;57378;57379;57380 36489;36490 36490 2 TVVSGLVQFVPK Unmodified 1272.7442 0.74417324 1706 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 62.332 62.574 2 0.00046115 23314 20181213_JW_Orientia_Karp_3_2 151.15 99.711 40479000 18864000 4934800 12546000 0 0 2078700 0 2054800 9459 1706 8091 57381;57382;57383;57384;57385;57386 36491;36492;36493;36494 36494 4 TVWDWELMNDIK Unmodified 1548.7283 0.72826518 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 72.547 72.629 2 0.00049663 33384 20181213_JW_Orientia_Karp_1_1 149.94 91.245 35670000 18112000 7719900 9837600 0 0 0 0 0 9460 1598 8092 57387;57388;57389 36495;36496;36497 36495 3 TVWDWELMNDIK Oxidation (M);Deamidation (NQ) 1565.7072 0.70719538 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 1 1 0 By MS/MS By matching By matching 1 1 1 69.008 69.091 2 0.042233 31140 20181213_JW_Orientia_Karp_1_1 60.49 15.13 17522000 6236600 3730300 7555600 0 0 0 0 0 9461 1598 8092 57390;57391;57392 36498 36498 0 TVWDWELMNDIK Oxidation (M) 1564.7232 0.7231798 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 0 0 1 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 65.81 66.04 2 0.031385 28847 20181213_JW_Orientia_Karp_1_3 74.962 39.31 45362000 10366000 7365700 22538000 680590 0 0 4411500 0 9462 1598 8092 57393;57394;57395;57396;57397 36499;36500 36500 2 TWNDPSVQQDIK Unmodified 1429.6838 0.68375782 1585 V9HWB4;P11021;B4DEF7 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By MS/MS By MS/MS 1 1 43.666 43.966 2 0.032892 14088 20181213_JW_Orientia_Karp_2_2 102.05 46.48 0 0 0 0 0 0 0 0 0 9463 1585 8093 57398;57399 36501;36502 36502 2 TWVSVASTNTWEDVASK Unmodified 1879.8952 0.89520716 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 60.55 60.87 2 1.1997E-53 25836 20181213_JW_Orientia_Karp_1_2 257.2 172.38 569500000 108110000 112190000 167190000 41847000 44884000 43500000 5384300 46395000 9464 1395 8094 57400;57401;57402;57403;57404;57405;57406;57407;57408 36503;36504;36505;36506;36507;36508;36509;36510;36511;36512 36504 10 TWVSVASTNTWEDVASK Deamidation (NQ) 1880.8792 0.87922275 1395 Karp_02151 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 62.684 62.976 2 7.1001E-68 26733 20181213_JW_Orientia_Karp_1_3 283.05 210.76 48332000 0 17058000 20055000 0 5318800 4683000 0 1218000 9465 1395 8094 57409;57410;57411;57412;57413;57414 36513;36514;36515 36515 902 3 TYADYESVNECMEGVCK Oxidation (M) 2069.8016 0.80164241 135 A0A024R6D4;P84090;G3V279 ERH Enhancer of rudimentary homolog yes no 0 0 1 0 By MS/MS 1 42.035 42.686 2 0.0011093 13656 20181213_JW_Orientia_Karp_3_1 163.33 152.61 0 0 0 0 0 0 0 0 0 9466 135 8095 57415 36516 36516 122 1 TYAESGNAQAAAICEYPR Unmodified 1970.8792 0.87923952 1927 Q92626;H7C1W1;Q92626-2;H7C300;C9J4I9 PXDN Peroxidasin homolog yes no 0 0 0 0 By matching By MS/MS 1 1 44.033 44.458 2 8.8332E-05 14591 20181213_JW_Orientia_Karp_3_1 141.59 108.04 4936500 0 0 3279800 0 0 0 1656700 0 9467 1927 8096 57416;57417 36517 36517 1 TYDATTHFETTCDDIK Unmodified 1916.8098 0.80982255 596 Q6IAT1;B4DLV7;P50395-2;P50395;Q8TB95;B3KVE3 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS 1 41.06 41.06 3 0.018728 13942 20181213_JW_Orientia_Karp_1_1 65.472 42.934 12862000 12862000 0 0 0 0 0 0 0 9468 596 8097 57418 36518 36518 1 TYDSYLGDDYVR Unmodified 1465.6361 0.63613893 808 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.004 51.399 2 2.483E-05 18198 20181213_JW_Orientia_Karp_2_1 173.64 127.18 58353000 0 11699000 5530500 14798000 9299500 11873000 3692400 1460900 + 9469 808 8098 57419;57420;57421;57422;57423;57424;57425 36519;36520;36521;36522;36523;36524 36520 6 TYEFDIVSK Unmodified 1100.539 0.53899107 1060 Karp_00004 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 52.019 52.269 2 0.00302 18969 20181213_JW_Orientia_Karp_2_3 113.66 80.108 117530000 21648000 35644000 16127000 17534000 10076000 16500000 0 0 9470 1060 8099 57426;57427;57428;57429;57430;57431 36525;36526;36527;36528;36529 36529 5 TYEHDLK Unmodified 904.42905 0.42904669 1081;1151;1356;1083;1086;1068 Karp_00028;Karp_00113;Karp_00131;Karp_01301;Karp_00209;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 17.958 18.298 2 0.01188 2213 20181213_JW_Orientia_Karp_2_2 138.24 47.466 29180000 0 12314000 8067200 5025300 695700 0 3077500 0 9471 1068;1081;1083;1086;1151;1356 8100 57432;57433;57434;57435;57436 36530;36531;36532;36533 36532 4 TYFPHFDLSHGSAQVK Unmodified 1832.8846 0.8845829 789;825 CON__P01966;Q96T46;G3V1N2;U6A216;Q9BX83;E9M4D4;I1VZV6;D1MGQ2;P69905;E1B2D1 HBA2;HBA1 Hemoglobin subunit alpha no no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 47.484 47.785 4 0.038624 16424 20181213_JW_Orientia_Karp_2_3 78.508 55.653 250580000 78104000 60675000 35568000 32076000 7564100 27139000 0 9452500 + 9472 789;825 8101 57437;57438;57439;57440;57441;57442;57443 36534 36534 1 TYGEPESAGPSR Unmodified 1249.5575 0.55749468 1691 Q5HY57;P50402 EMD Emerin yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 28.103 28.437 2 0.0012357 7645 20181213_JW_Orientia_Karp_1_1 131.09 81.372 3985200 1794500 1775300 0 0 0 0 415480 0 9473 1691 8102 57444;57445;57446 36535;36536 36535 2 TYHVGEQWQK Unmodified 1274.6044 0.60438529 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;B4DU16;B4DTK1;Q6PJE5;B4DN21;B4DTH2;Q9H382;Q7L553;Q53S27 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 30.125 30.535 3 2.5219E-06 8179 20181213_JW_Orientia_Karp_1_3 202.44 125.6 124340000 55592000 0 30167000 11148000 6752700 0 14161000 6522400 9474 85 8103 57447;57448;57449;57450;57451;57452;57453;57454;57455 36537;36538;36539;36540;36541;36542;36543;36544;36545;36546;36547;36548 36541 12 TYLGNALVCTCYGGSR Unmodified 1790.808 0.80798883 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 52.854 53.199 2 4.4849E-20 18654 20181213_JW_Orientia_Karp_3_1 221.85 176.19 183770000 64807000 52007000 39326000 5693000 6437300 5802700 9139000 561040 9475 85 8104 57456;57457;57458;57459;57460;57461;57462;57463;57464 36549;36550;36551;36552;36553;36554;36555;36556 36555 8 TYNVLNQDGVAVR Unmodified 1447.7419 0.7419414 1399 Karp_02188 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 47.995 48.295 2 3.0336E-11 16710 20181213_JW_Orientia_Karp_2_3 198.97 150.78 741260000 0 327230000 209810000 102730000 46058000 55436000 0 0 9476 1399 8105 57465;57466;57467;57468;57469 36557;36558;36559;36560 36560 4 TYPDIQDYQIIK Unmodified 1495.7559 0.75586013 1122 Karp_00322 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 59.199 59.519 2 0.00037267 22773 20181213_JW_Orientia_Karp_2_1 154.15 100.08 472860000 97887000 122780000 99156000 31541000 45420000 47588000 5430300 23056000 9477 1122 8106 57470;57471;57472;57473;57474;57475;57476;57477 36561;36562;36563;36564;36565;36566;36567;36568;36569 36564 9 TYQPTLPLNDNNNTYQTTEINSEEYGK Deamidation (NQ) 3147.4156 0.41564763 1416 Karp_02253 yes yes 0 1 0 0 By MS/MS By matching 1 1 61.025 61.2 3 0.03486 26402 20181213_JW_Orientia_Karp_1_1 52.773 32.847 16665000 11641000 5023500 0 0 0 0 0 0 9478 1416 8107 57478;57479 36570 36570 1 TYSDHISVPIYYVGVDGK Unmodified 2011.9891 0.98910755 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 1 1 1 1 59.238 59.543 3 0.00011607 24743 20181213_JW_Orientia_Karp_1_2 132.51 88.467 822290000 163420000 159660000 256460000 59783000 97188000 84697000 235400 832910 9479 1251 8108 57480;57481;57482;57483;57484;57485;57486;57487;57488;57489;57490 36571;36572;36573;36574;36575;36576;36577;36578;36579;36580 36573 10 TYSLGSALR Unmodified 966.51345 0.51344502 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 43.014 43.344 2 0.00080867 14545 20181213_JW_Orientia_Karp_1_3 138.06 92.09 89083000 25118000 38865000 16003000 2950400 0 0 6145900 0 9480 1571 8109 57491;57492;57493;57494;57495 36581;36582;36583;36584 36583 4 TYSLGSALRPSTSR Unmodified 1494.7791 0.77905519 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 39.075 39.383 3 0.032366 12552 20181213_JW_Orientia_Karp_1_2 77.597 46.412 4420200000 4324400 1687700000 1716900000 380450000 140760000 28708000 461370000 0 9481 1571 8110 57496;57497;57498;57499;57500;57501;57502 36585 36585 1 TYSVEYLPK Unmodified 1098.5597 0.55972651 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By matching 1 1 46.707 46.882 2 0.00082061 16478 20181213_JW_Orientia_Karp_1_3 134.48 93.251 33941000 0 0 30274000 0 3666600 0 0 0 9482 1520 8111 57503;57504 36586 36586 1 TYSYLTPDLWK Unmodified 1385.6867 0.68671794 973 H0YEN5;Q8J014;Q8N5L9;Q3KQT6;P15880;E9PQD7;Q6IPX5;O60249;Q8NI62;Q9BSW5;A4D0Y7 RPS2;rps2;OK/KNS-cl.6;LOC392781 40S ribosomal protein S2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 63.92 64.257 2 0.0081947 25327 20181213_JW_Orientia_Karp_2_3 99.013 56.211 5599800 0 0 0 0 0 2478300 86488 3035100 9483 973 8112 57505;57506;57507;57508 36587;36588 36588 2 TYSYQDVIYNTTDGLGACLIAICGSNGTIIRK Deamidation (NQ) 3537.712 0.71196977 331 A7Y9J9;Q9HC84 MUC5AC;MUC5B Mucin-5B yes no 0 1 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 44.314 44.641 4 0.013848 14628 20181213_JW_Orientia_Karp_3_1 44.301 19.798 71056000 13938000 27437000 21816000 0 0 1962800 4912600 989640 9484 331 8113 57509;57510;57511;57512;57513;57514 36589 36589 1388 1 VAAETQSPSLFGSTK Unmodified 1521.7675 0.76748745 104 A0A024R4X7;Q9UKX7-2;Q9UKX7 hCG_1989366;NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 0 By MS/MS 1 46.179 46.179 2 0.0034585 16694 20181213_JW_Orientia_Karp_1_1 143.31 47.138 0 0 0 0 0 0 0 0 0 9485 104 8114 57515 36590 36590 1 VAAIEALNDGELQK Unmodified 1469.7726 0.77257283 676 B4E0U6;P50502;Q3KNR6;Q1XBU6;B7ZA40;Q0IJ56;H7C3I1;F6VDH7;Q8IZP2;D6W507 ST13;ST13P4;hCG_1990625 Hsc70-interacting protein;Putative protein FAM10A4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.737 51.082 2 1.3157E-11 17376 20181213_JW_Orientia_Karp_3_1 198.97 142.34 253000000 96093000 46566000 23072000 24243000 18629000 18891000 19296000 6210300 9486 676 8115 57516;57517;57518;57519;57520;57521;57522;57523 36591;36592;36593;36594;36595 36594 5 VAAPDVVVPTLDTVR Unmodified 1550.8668 0.86680757 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 63.018 63.299 2 0.0334 26982 20181213_JW_Orientia_Karp_1_3 74.392 48.35 37296000 12379000 9057600 14571000 395320 0 0 0 893810 9487 1796 8116 57524;57525;57526;57527;57528 36596;36597 36597 2 VAASIGNAQK Unmodified 957.52434 0.52434406 1487 V9HW92;O00151 HEL-S-112;PDLIM1 PDZ and LIM domain protein 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 24.294 24.619 2 0.038885 5210 20181213_JW_Orientia_Karp_2_1 72.879 28.502 9473900 0 4770500 866760 970630 1376200 442760 1047000 0 9488 1487 8117 57529;57530;57531;57532;57533;57534 36598 36598 1 VAASVLNPYVK Unmodified 1159.6601 0.66010926 1679 Q53HH2;P48047;H7C0C1 ATP5O ATP synthase subunit O, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 47.969 48.315 2 0.0013789 17686 20181213_JW_Orientia_Karp_1_2 123.86 60.33 118880000 22293000 40076000 14080000 13814000 9689400 5246100 85189 13597000 9489 1679 8118 57535;57536;57537;57538;57539;57540;57541;57542 36599;36600;36601;36602 36599 2 VADGLPLAASMQEDEQSGR Oxidation (M) 1988.9109 0.91093358 1521 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 1 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 49 49.175 2 1.9819E-05 18159 20181213_JW_Orientia_Karp_1_2 145.86 118.53 32352000 7192800 11786000 9788000 0 3585500 0 0 0 9490 1521 8119 57543;57544;57545;57546;57547 36603;36604 36603 1137 2 VADWTGATYQDK Unmodified 1353.6201 0.62009493 428 B0QYA5;O15371-2;O15371-3;O15371;B0QYA8;B0QYA6;B0QYA7 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 41.734 42.023 2 0.031674 13335 20181213_JW_Orientia_Karp_2_1 78.692 49.895 19547000 9096300 0 6028000 3803200 0 0 0 619140 9491 428 8120 57548;57549;57550;57551 36605 36605 1 VAEEHAPSIVFIDEIDAIGTK Unmodified 2253.1529 0.15287841 1725 Q53XL8;Q53HB3;P62191-2;P62191 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 67.963 68.087 3 0.00099704 30263 20181213_JW_Orientia_Karp_1_2 143.69 109.43 17078000 11208000 5869800 0 0 0 0 0 0 9492 1725 8121 57552;57553 36606;36607 36607 2 VAEELALEQAK Unmodified 1199.6398 0.63976774 299 B7Z1X9;A4D1N4;C9JRZ6;F8WAR4;Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 42.843 43.203 2 0.00052792 15090 20181213_JW_Orientia_Karp_1_1 140.07 34.679 62288000 18285000 22140000 9881600 2822200 0 0 8041000 1118300 9493 299 8122 57554;57555;57556;57557;57558;57559 36608;36609;36610;36611 36608 4 VAELEAQAASEVTPTGEK Unmodified 1828.9054 0.9054375 481 Q5U0L9;B2RA10;M0QYF9;Q9NSC5-5;Q9NSC5-2;Q9NSC5 HOMER3 Homer protein homolog 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 46.619 46.911 2 1.9404E-06 16485 20181213_JW_Orientia_Karp_1_3 151.54 99.615 21297000 0 4862400 8776100 0 2404100 2076000 0 3178400 9494 481 8123 57560;57561;57562;57563;57564;57565 36612;36613;36614;36615 36614 4 VAETPVFLELVK Unmodified 1343.7701 0.77005364 1419 Karp_02256 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 68.845 68.994 2 0.0043747 24471 20181213_JW_Orientia_Karp_3_1 95.483 52.74 20185000 5186000 1904700 5506900 1161200 1598700 1804200 3023600 0 9495 1419 8124 57566;57567;57568;57569;57570;57571;57572 36616;36617 36617 2 VAEVLFDAADANAIEEVNLAYENVK 2 Deamidation (NQ) 2708.3069 0.30687245 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 2 0 0 By MS/MS 1 74.1 74.098 3 0.020162 34028 20181213_JW_Orientia_Karp_1_3 65.213 43.09 18029000 0 0 18029000 0 0 0 0 0 9496 1796 8125 57573 36618 36618 1160;1161 0 VAFITGGGTGLGK Unmodified 1176.6503 0.65027285 182 E5RJD2;E5RJG7;Q7LDK6;E5RFV2;A0A024R9D7;Q16698-2;Q16698;E5RID6 DECR1;DECR 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 49.653 49.98 2 0.006292 18750 20181213_JW_Orientia_Karp_1_2 116.55 59.499 35920000 9152200 8853300 11733000 2501400 0 1998000 0 1681900 9497 182 8126 57574;57575;57576;57577;57578;57579 36619;36620;36621 36619 3 VAGAATPK Unmodified 713.40719 0.40718903 1605 P16402 HIST1H1D Histone H1.3 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 18.018 18.192 2 0.014725 3253 20181213_JW_Orientia_Karp_1_2 96.19 49.424 15415000 5913100 5453300 3634300 413880 0 0 0 0 9498 1605 8127 57580;57581;57582;57583 36622;36623 36623 2 VAGHPNIVINNAAGNFISPTER Unmodified 2290.1818 0.18182755 182 E5RJD2;E5RJG7;Q7LDK6;E5RFV2;A0A024R9D7;Q16698-2;Q16698 DECR1;DECR 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 51.9 52.083 3 0.035412 20568 20181213_JW_Orientia_Karp_1_1 40.779 4.0343 38357000 8930800 10996000 18430000 0 0 0 0 0 9499 182 8128 57584;57585;57586 36624 36624 1 VAGMDVELTVEER Oxidation (M) 1462.6974 0.69735898 1728 V9HW98;P62258;G9K389;G9K388;P62258-2;B4DJF2;I3L3T1;B4DJB0;K7EIT4 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 46.22 46.478 2 0.00028842 15460 20181213_JW_Orientia_Karp_2_2 157.68 97.16 54375000 9454900 7917600 14758000 4955800 7377300 6077600 0 3833000 9500 1728 8129 57587;57588;57589;57590;57591;57592;57593;57594;57595 36625;36626;36627;36628;36629;36630;36631;36632 36629 1355 8 VAGQDGSVVQFK Unmodified 1233.6354 0.63535107 170 H7BZT4;A0A024R8S3;A8MUA9;A8MU27;P61956-2;Q6EEV6;P61956;P55854;P55854-2 SUMO2;SUMO3;SUMO4 Small ubiquitin-related modifier;Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 4;Small ubiquitin-related modifier 3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 41.339 41.638 2 2.8185E-08 12729 20181213_JW_Orientia_Karp_2_2 194.12 134.19 177660000 56592000 48555000 27829000 13877000 8015600 0 22795000 0 9501 170 8130 57596;57597;57598;57599;57600;57601 36633;36634;36635;36636;36637;36638 36636 4 VAHALAEGLGVIACIGEK Unmodified 1806.9662 0.96620404 1715 V9HWK1;Q53HE2;P60174-1;P60174;B4DUI5;P60174-4;U3KPZ0;U3KQF3 HEL-S-49;TPI1 Triosephosphate isomerase yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 58.389 58.676 3 0.011283 22169 20181213_JW_Orientia_Karp_2_2 72.446 31.069 72953000 27700000 9974700 14333000 1091200 9211100 9258800 0 1384100 9502 1715 8131 57602;57603;57604;57605;57606;57607;57608 36639;36640 36640 2 VAHMETSLGQAR Oxidation (M) 1314.635 0.63503349 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 1 2 2 2 2 1 21.399 21.728 2;3 0.0081817 4413 20181213_JW_Orientia_Karp_1_2 98.048 60.704 16243000 1748500 6097900 1447700 1935300 1175500 1669800 1890700 277900 9503 839 8132 57609;57610;57611;57612;57613;57614;57615;57616;57617;57618;57619;57620;57621;57622 36641;36642 36642 482 2 VAHSLLEDINK Unmodified 1237.6667 0.6666512 1139 Karp_00451 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 39.834 40.199 2 0.0063938 13008 20181213_JW_Orientia_Karp_1_2 102.06 62.003 58516000 0 15274000 11506000 9241200 2353400 2536600 14455000 3149000 9504 1139 8133 57623;57624;57625;57626;57627;57628;57629 36643;36644 36643 2 VAHSLLEDINKDTVDFQANYDGLEQEPK Deamidation (NQ) 3188.515 0.51496775 1139 Karp_00451 yes yes 0 1 0 1 By MS/MS 1 60.961 61.41 3 6.3796E-07 23920 20181213_JW_Orientia_Karp_2_1 140.04 112.32 2544700 0 0 0 2544700 0 0 0 0 9505 1139 8134 57630 36645 36645 528 0 VAHSLLEDINKDTVDFQANYDGLEQEPK Unmodified 3187.531 0.53095216 1139 Karp_00451 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 2 61.016 61.39 3;4 0.000718 22648 20181213_JW_Orientia_Karp_3_2 78.3 55.016 49060000 0 11218000 4331200 5646500 18802000 0 0 9062900 9506 1139 8134 57631;57632;57633;57634;57635;57636;57637 36646;36647 36647 2 VAIPASVLPGPEEPGGQR Unmodified 1772.9421 0.94209778 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.373 58.66 2 9.0653E-05 24825 20181213_JW_Orientia_Karp_1_1 141.37 108.76 98640000 23771000 16971000 41121000 4056400 5411900 4115200 0 3193500 9507 839 8135 57638;57639;57640;57641;57642;57643;57644 36648;36649;36650;36651;36652;36653 36648 6 VALGHGLK Unmodified 793.48102 0.48102268 105 Q59GH7;A0A024R4Z6;Q08945 SSRP1 FACT complex subunit SSRP1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 20.009 20.34 2 0.0047737 3730 20181213_JW_Orientia_Karp_2_3 126.05 19.76 31961000 0 11317000 0 6538200 2791400 4427800 6886700 0 9508 105 8136 57645;57646;57647;57648;57649 36654;36655;36656;36657;36658 36657 5 VALQDAASGLQEQALGWDELAAR Unmodified 2411.2081 0.20810188 689 B4E3H8;Q9H8L6;B4DEW5 MMRN2 Multimerin-2 yes no 0 0 0 0 By MS/MS 1 72.128 72.278 2 0.0089916 33209 20181213_JW_Orientia_Karp_1_2 78.95 55.108 8969200 0 8969200 0 0 0 0 0 0 9509 689 8137 57650 36659 36659 1 VALTGLTIAESFR Unmodified 1376.7664 0.76636524 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.222 65.429 2 2.3758E-34 28638 20181213_JW_Orientia_Karp_1_2 247.96 190.81 125350000 34498000 29360000 24019000 3849800 13026000 10494000 10105000 0 9510 1341 8138 57651;57652;57653;57654;57655;57656;57657 36660;36661;36662;36663;36664;36665;36666 36661 7 VALTGLTVAEYFR Unmodified 1438.782 0.78201531 1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W0P7 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 68.455 68.633 2 3.2602E-08 27149 20181213_JW_Orientia_Karp_2_2 194.17 133.52 59879000 15185000 10366000 11814000 2180800 5375500 2589100 12368000 0 9511 1560 8139 57658;57659;57660;57661;57662;57663;57664;57665 36667;36668;36669;36670;36671 36670 5 VALVYGQMNEPPGAR Oxidation (M) 1616.7981 0.79807608 1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W0P7 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 44.612 44.914 2 0.0018165 15621 20181213_JW_Orientia_Karp_1_2 122.39 87.619 39056000 10309000 9128900 10561000 0 2603800 1887600 3621000 944350 9512 1560 8140 57666;57667;57668;57669;57670;57671;57672;57673 36672;36673;36674;36675;36676;36677;36678 36674 1176 7 VALVYGQMNEPPGAR Unmodified 1600.8032 0.80316145 1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W0P7 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 50.294 50.594 2 0.0053741 19547 20181213_JW_Orientia_Karp_1_1 105.65 60.281 35474000 13662000 9233800 9449400 0 0 0 3129400 0 9513 1560 8140 57674;57675;57676;57677 36679;36680;36681;36682 36679 4 VANPSGNLTETYVQDR Unmodified 1762.8486 0.84859132 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 44.474 44.804 2 1.0178E-94 15556 20181213_JW_Orientia_Karp_1_2 302.2 216.22 481650000 166870000 128570000 100400000 13555000 5201100 0 60198000 6859800 9514 1615 8141 57678;57679;57680;57681;57682;57683;57684;57685 36683;36684;36685;36686;36687;36688 36684 5 VANPSGNLTETYVQDR Deamidation (NQ) 1763.8326 0.83260691 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 1 0 0 By MS/MS 1 49.276 49.276 2 0.019594 18712 20181213_JW_Orientia_Karp_1_1 98.592 60.653 0 0 0 0 0 0 0 0 0 9515 1615 8141 57686 36689 36689 1079 1 VANVSLLALYK Unmodified 1189.7071 0.70705945 366 A8K517;P62266 RPS23 40S ribosomal protein S23 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 60.371 60.621 2 8.8697E-05 25745 20181213_JW_Orientia_Karp_1_2 161.51 128.7 30271000 6822700 8976700 7139800 1337000 3635500 2359500 0 0 9516 366 8142 57687;57688;57689;57690;57691;57692 36690;36691;36692;36693 36691 4 VAPDEHPILLTEAPLNPK Unmodified 1953.0571 0.057127534 1836 Q562R1 ACTBL2 Beta-actin-like protein 2 yes yes 0 0 0 0 By MS/MS 1 51.566 51.817 3 0.010308 18655 20181213_JW_Orientia_Karp_2_3 74.141 1.708 2628900000 0 0 0 0 0 2628900000 0 0 9517 1836 8143 57693 36694 36694 1 VAPEEHPVLLTEAPLNPK Unmodified 1953.0571 0.057127534 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;G5E9R0;E7EVS6;Q562Z7;Q562Y6;Q562X9;Q562S0;Q562N8;Q562N0;Q562L5;Q562R8;Q562P0;Q562L9;Q562U2;Q562P9;Q562N6;Q562N4;Q562L6;Q562Z4;Q562V5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282 PS1TP5BP1;ACTB;ACT;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 51.505 51.817 3 0.0014927 18453 20181213_JW_Orientia_Karp_2_2 101.3 1.3883 22519000000 0 9063900000 8097000000 3079400000 2278700000 0 0 0 9518 1717;1743 8144 57694;57695;57696;57697 36695;36696;36697;36698 36698 4 VAPLGEEFR Unmodified 1016.5291 0.52909508 800 CON__P15497 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 45.521 45.822 2 0.034841 14435 20181213_JW_Orientia_Karp_3_2 75.043 53.083 124340000 44432000 42426000 32831000 3219600 0 0 0 1427600 + 9519 800 8146 57698;57699;57700;57701;57702 36699 36699 1 VAQLEAQCQEPCK Unmodified 1559.7072 0.70721216 769 C9JPQ9;C9JU00;D3DP16;Q7Z664;C9JEU5;C9JC84;P02679-2;P02679 FGG;DKFZp779N0926 Fibrinogen gamma chain yes no 0 0 0 0 By MS/MS 1 32.989 32.989 2 3.4986E-05 9762 20181213_JW_Orientia_Karp_1_1 173.76 105.2 3741700 3741700 0 0 0 0 0 0 0 9520 769 8147 57703 36700 36700 1 VAQLEQVYIR Unmodified 1217.6768 0.67682195 1734 P62318-2;P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 48.204 48.505 2 0.0036349 17531 20181213_JW_Orientia_Karp_1_3 104.52 47.96 63270000 12172000 13191000 7459100 14057000 4195600 6207800 0 5987400 9521 1734 8148 57704;57705;57706;57707;57708;57709;57710 36701;36702 36701 2 VASEALSAAHSK Unmodified 1169.6041 0.60405094 1217 Karp_00884 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 22.874 23.207 2;3 5.0923E-11 4625 20181213_JW_Orientia_Karp_2_3 195.83 146.41 406710000 63815000 176190000 54448000 26627000 22156000 22754000 27890000 12824000 9522 1217 8149 57711;57712;57713;57714;57715;57716;57717;57718;57719;57720;57721;57722;57723;57724;57725;57726;57727 36703;36704;36705;36706;36707;36708;36709;36710;36711 36708 9 VASEEEEVPLVVYLK Unmodified 1702.9029 0.9029183 329 A7MD96;Q8N3V7-3;Q8N3V7-2;B3KXB8;Q8N3V7 SYNPO Synaptopodin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 67.097 67.304 2 4.5032E-06 23575 20181213_JW_Orientia_Karp_3_1 170.4 134.08 67623000 14603000 15724000 12768000 4561100 9826500 3614100 2492600 4034800 9523 329 8150 57728;57729;57730;57731;57732;57733;57734;57735 36712;36713;36714;36715;36716 36716 4 VASGPSPGEGISPQSAQAPQAPGDNHVVPVLR Unmodified 3118.5796 0.57957411 1800 X5D7K9;X5DNU0;X5D2M8;Q14764;B4DP93;B4DXN0;B4DDR2 MVP Major vault protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 52.481 52.83 3 4.1296E-08 20689 20181213_JW_Orientia_Karp_1_2 114.85 92.926 60422000 12089000 19386000 18597000 4014100 0 0 6337100 0 9524 1800 8151 57736;57737;57738;57739;57740 36717;36718;36719;36720 36718 4 VASGPSPGEGISPQSAQAPQAPGDNHVVPVLR Deamidation (NQ) 3119.5636 0.56358969 1800 X5D7K9;X5DNU0;X5D2M8;Q14764;B4DP93;B4DXN0;B4DDR2 MVP Major vault protein yes no 0 1 0 0 By MS/MS By matching By matching 1 1 1 54.418 54.601 3 4.1248E-05 22353 20181213_JW_Orientia_Karp_1_1 82.541 55.642 23519000 9556100 9040900 4922400 0 0 0 0 0 9525 1800 8151 57741;57742;57743 36721 36721 1163 1 VASPSPSGSVLFTDEGVPK Unmodified 1872.9469 0.94690838 1711 Q96DP0;P56181-2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 56.527 56.807 2 0.022202 23256 20181213_JW_Orientia_Karp_1_2 76.01 37.772 45122000 14859000 15443000 0 5026800 6144700 3648300 0 0 9526 1711 8152 57744;57745;57746;57747;57748 36722 36722 1 VASPVDTVNDSIR Unmodified 1371.6994 0.69940789 1113 Karp_00296 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.078 46.398 2 0.0065953 16799 20181213_JW_Orientia_Karp_1_1 105.25 67.555 362440000 87627000 105090000 98545000 21092000 12188000 17943000 4952100 15011000 9527 1113 8153 57749;57750;57751;57752;57753;57754;57755;57756 36723 36723 1 VASTTEHTDMK Oxidation (M) 1234.55 0.54996646 1375 Karp_02111 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 3 3 3 2 11.06 11.452 2 0.00043737 1787 20181213_JW_Orientia_Karp_1_1 140.17 92.567 9056500 1448300 1054300 701750 636500 1686200 977880 1552000 999570 9528 1375 8154 57757;57758;57759;57760;57761;57762;57763;57764;57765;57766;57767;57768;57769;57770;57771;57772;57773;57774;57775;57776 36724;36725;36726;36727;36728;36729;36730;36731;36732;36733 36724 968 10 VASTTEHTDMK Unmodified 1218.5551 0.55505184 1375 Karp_02111 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 2 17.806 18.035 2;3 0.013431 3225 20181213_JW_Orientia_Karp_1_2 90.149 54.497 52142000 17323000 22341000 8375900 2799100 0 0 1302400 0 9529 1375 8154 57777;57778;57779;57780;57781;57782;57783;57784;57785;57786 36734;36735 36734 2 VASVLGTMEMGR 2 Oxidation (M) 1281.6057 0.6057072 670 B4DZX4;H3BLU7;V9HWA2;O43488 AKR7A2;HEL-S-166mP Aflatoxin B1 aldehyde reductase member 2 yes no 0 0 2 0 By MS/MS 1 36.593 36.593 2 0.022389 11628 20181213_JW_Orientia_Karp_1_1 103.26 70.065 0 0 0 0 0 0 0 0 0 9530 670 8155 57787 36736 36736 410;411 1 VATAQDDITGDGTTSNVLIIGELLK Unmodified 2543.333 0.33302762 262 A1JUI8;B4DPJ8;Q59ET3;B2R9K8;A0A024RDL1;P40227 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By matching By MS/MS 1 1 74.555 74.579 2 6.5754E-15 34362 20181213_JW_Orientia_Karp_1_3 171.25 126.29 21861000 0 7937900 13923000 0 0 0 0 0 9531 262 8156 57788;57789 36737 36737 1 VATMNDIEQLASLATSESHK Oxidation (M) 2160.0369 0.036862376 1172 Karp_00626 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.133 57.434 3 2.2109E-12 23624 20181213_JW_Orientia_Karp_1_2 178.57 130.18 273650000 35237000 98325000 64748000 16829000 21335000 16754000 0 20425000 9532 1172 8157 57790;57791;57792;57793;57794;57795;57796 36738;36739;36740;36741;36742;36743;36744;36745 36739 726 6 VATMNDIEQLASLATSESHK Unmodified 2144.0419 0.041947754 1172 Karp_00626 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 64.194 64.41 3 0.01717 25427 20181213_JW_Orientia_Karp_2_3 72.21 49.557 331280000 111590000 84990000 82473000 0 20311000 31169000 62680 681020 9533 1172 8157 57797;57798;57799;57800;57801;57802;57803 36746;36747;36748;36749 36749 4 VATMNDIEQLASLATSESHK Oxidation (M);Deamidation (NQ) 2161.0209 0.020877961 1172 Karp_00626 yes yes 0 1 1 0 By matching By MS/MS By matching By matching 1 1 1 1 59.168 59.468 3 0.012678 24638 20181213_JW_Orientia_Karp_1_3 88.471 58.388 68334000 38754000 0 27785000 1479300 0 0 315170 0 9534 1172 8157 57804;57805;57806;57807 36750 36750 1817 726 1 VATNEQIDWATAEQLAFASLLTEK Unmodified 2648.3334 0.33336197 1416 Karp_02253 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 76.358 76.368 3 0.00089009 35875 20181213_JW_Orientia_Karp_1_1 96.133 67.106 39653000 6092300 15439000 13051000 2148700 2922500 0 0 0 9535 1416 8158 57808;57809;57810;57811;57812 36751;36752 36751 2 VATVSLPR Unmodified 841.50215 0.50215205 787 CON__P00761 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 3 5 8 6 5 2 41.622 41.942 2 0.00038859 12733 20181213_JW_Orientia_Karp_1_3 191.63 79.977 136510000000 27204000000 29796000000 17562000000 29888000000 11407000000 725270000 19769000000 162670000 + 9536 787 8159 57813;57814;57815;57816;57817;57818;57819;57820;57821;57822;57823;57824;57825;57826;57827;57828;57829;57830;57831;57832;57833;57834;57835;57836;57837;57838;57839;57840;57841;57842;57843;57844;57845;57846;57847;57848;57849;57850;57851 36753;36754;36755;36756;36757;36758;36759;36760;36761;36762;36763;36764;36765;36766;36767;36768;36769;36770;36771;36772 36759 20 VATWFNQPAR Unmodified 1188.604 0.60399136 357 Q6NZ55;A8K4C8;P26373;J3QSB4;P26373-2;H3BTH3;B4DGL7 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 47.056 47.443 2 0.00078678 16839 20181213_JW_Orientia_Karp_1_3 128.6 61.64 162050000 68578000 0 57065000 10741000 0 0 203770 25460000 9537 357 8160 57852;57853;57854;57855;57856 36773;36774;36775 36774 3 VAVFSPDSSIDAVGSCIGMR Unmodified 2066.9765 0.97651073 1365 Karp_01875 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 67.433 67.648 2 2.3011E-05 30271 20181213_JW_Orientia_Karp_1_1 143.05 86.83 21029000 8736000 3416700 7277500 0 0 0 0 1598600 9538 1365 8161 57857;57858;57859;57860 36776 36776 1 VAVFSPDSSIDAVGSCIGMR Oxidation (M) 2082.9714 0.97142535 1365 Karp_01875 yes yes 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 62.865 63.217 2 0.0032483 23772 20181213_JW_Orientia_Karp_3_2 98.676 61.063 15377000 0 0 11673000 254950 0 0 0 3449200 9539 1365 8161 57861;57862;57863 36777;36778 36778 947 2 VAVGNQPADIGYK Unmodified 1330.6881 0.68811492 1611 P20591;F8W8T1;Q8NAA8;P20591-2;H9KVC7;H9KVC9 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 40.943 41.273 2 0.00062607 13986 20181213_JW_Orientia_Karp_1_1 150.09 102.44 148930000 27333000 49016000 46602000 14351000 0 0 11629000 0 9540 1611 8162 57864;57865;57866;57867;57868;57869 36779;36780;36781;36782 36779 4 VAVGQEQAFSVNTR Unmodified 1504.7634 0.76340513 1797 Q14315-2;Q14315 FLNC Filamin-C yes no 0 0 0 0 By MS/MS 1 43.934 44.284 2 0.04052 15292 20181213_JW_Orientia_Karp_1_2 87.498 35.22 0 0 0 0 0 0 0 0 0 9541 1797 8163 57870 36783 36783 1 VAVLGASGGIGQPLSLLLK Unmodified 1792.0822 0.082220072 96 Q0QF37;Q75MT9;Q6FHZ0;A0A024R4K3;P40926;P40926-2 MDH2 Malate dehydrogenase;Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 73.684 73.725 2 6.0167E-24 27381 20181213_JW_Orientia_Karp_3_1 215.96 170.6 64701000 31574000 0 14223000 2333500 0 0 12196000 4374100 9542 96 8164 57871;57872;57873;57874;57875 36784;36785;36786;36787 36787 4 VAVTEGCQPSR Unmodified 1202.5714 0.5713706 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 27.12 27.421 2 0.00025312 7186 20181213_JW_Orientia_Karp_1_1 152.54 97.816 17202000 4903200 0 3846500 0 2796300 0 5655400 0 9543 1520 8165 57876;57877;57878;57879;57880 36788;36789;36790 36788 3 VAVVNQIAR Unmodified 968.57671 0.57671398 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 37.71 38.05 2 0.0006651 11905 20181213_JW_Orientia_Karp_1_2 152.63 57.971 21939000 11747000 4803500 0 1251100 916070 0 3220700 0 9544 506 8166 57881;57882;57883;57884;57885 36791;36792 36792 2 VCALEAANNGTLYIDEIADLPLSLQSR Deamidation (NQ) 2946.4645 0.4644525 1358 Karp_01807 yes yes 0 1 0 0 By matching By MS/MS By MS/MS 1 1 1 76.974 76.973 3 0.002402 35993 20181213_JW_Orientia_Karp_1_3 72.082 33.907 22456000 0 4798500 6905200 0 0 0 10752000 0 9545 1358 8167 57886;57887;57888 36793;36794 36793 819;820 2 VCELTGVSVQSGHNVSHSQR Unmodified 2180.0393 0.039262413 1165 Karp_00617 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 30.318 30.737 4 0.015635 7122 20181213_JW_Orientia_Karp_3_2 66.261 38.049 117650000 0 31576000 23819000 0 0 0 0 62257000 9546 1165 8168 57889;57890;57891 36795 36795 1 VCNAVVTGLSSGQEYQFR Deamidation (NQ) 2014.9418 0.94183978 1925 Q8WZ42-12;D3DPF9;C0JYZ2;D3DPG0;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13 TTN Titin yes no 0 1 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 48.942 49.243 2 0.019413 18065 20181213_JW_Orientia_Karp_1_3 90.697 35.436 47010000 9521800 9537400 8819000 7157000 4411200 4179800 0 3383400 9547 1925 8169 57892;57893;57894;57895;57896;57897;57898 36796 36796 1201 1 VCNPIITK Unmodified 943.51609 0.51608756 1586 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96BE0;Q96H53;E9PS65;Q9NZ87;Q9NWW3 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 36.17 36.492 2 0.0052141 9988 20181213_JW_Orientia_Karp_2_2 119.41 26.936 82896000 4607800 14134000 15761000 6270700 27899000 3780600 10443000 0 9548 1586 8170 57899;57900;57901;57902;57903;57904;57905;57906 36797;36798;36799;36800;36801 36799 5 VCNQIEFLNTEFK Unmodified 1640.7868 0.78684269 1495 Q5T765;O14879 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 yes no 0 0 0 0 By MS/MS 1 60.236 60.746 2 0.0078389 22272 20181213_JW_Orientia_Karp_3_2 122.55 70.057 0 0 0 0 0 0 0 0 0 9549 1495 8171 57907 36802 36802 1 VCNYVNWIQQTIAAN Unmodified 1792.8567 0.85665359 787 CON__P00761 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 74.745 74.777 2 1.0576E-77 34409 20181213_JW_Orientia_Karp_1_3 294.49 215.46 618680000 137130000 101920000 151000000 4738500 40871000 58118000 105480000 19423000 + 9550 787 8172 57908;57909;57910;57911;57912;57913;57914;57915 36803;36804;36805;36806;36807;36808;36809;36810;36811;36812 36805 10 VCNYVNWIQQTIAAN Deamidation (NQ) 1793.8407 0.84066917 787 CON__P00761 yes yes 0 1 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 75.351 75.357 2 2.9078E-11 35225 20181213_JW_Orientia_Karp_1_2 199.4 151.29 52329000 16998000 6529400 8765200 3146000 6007400 5191000 5691400 0 + 9551 787 8172 57916;57917;57918;57919;57920;57921;57922 36813;36814 36813 1643 2 VCTLAIIDPGDSDIIR Unmodified 1756.9029 0.90293508 181 E5RI99;A0A024R9D3;P62888 RPL30 60S ribosomal protein L30 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 68.596 68.803 2 3.9425E-05 31014 20181213_JW_Orientia_Karp_1_1 152.14 79.072 31545000 6019900 4866300 5447000 2117200 3281900 2725600 4578000 2509400 9552 181 8173 57923;57924;57925;57926;57927;57928;57929;57930 36815 36815 1 VDAETGDVFAIER Unmodified 1420.6834 0.68342347 640 B4DU18;Q59EA3;P33151;I3L1J2;Q4VAI4;P33151-2;H3BPG1 CDH5 Cadherin-5 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 55.736 56.006 2 0.015454 22447 20181213_JW_Orientia_Karp_1_3 90.434 49.44 27809000 5153800 7967400 10198000 2222400 0 2267000 0 0 9553 640 8174 57931;57932;57933;57934;57935 36816 36816 1 VDALMDEINFMK Oxidation (M) 1440.6629 0.66288773 799;679 B4E1T1;B4DL32;H0YIN9;CON__P13647;P13647 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 61.727 62.039 2 0.010637 23942 20181213_JW_Orientia_Karp_2_2 93.258 51.553 12159000 0 0 2468300 567620 4862500 3099400 0 1161300 + 9554 679;799 8175 57936;57937;57938;57939;57940 36817 36817 419 1 VDALNDEINFLR Unmodified 1417.7201 0.72014333 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q3KNV1 KRT7 Keratin, type II cytoskeletal 7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65.234 65.441 2 4.0586E-41 28308 20181213_JW_Orientia_Karp_1_3 270.61 144.89 156490000 49662000 22211000 41308000 3369500 16223000 10184000 13537000 0 + 9555 811 8176 57941;57942;57943;57944;57945;57946;57947 36818;36819;36820;36821;36822;36823;36824 36820 7 VDALNDEINFLR Deamidation (NQ) 1418.7042 0.70415892 811 CON__Q3KNV1;P08729;CON__P08729;B3KY79;Q3KNV1 KRT7 Keratin, type II cytoskeletal 7 yes no 0 1 0 0 By matching By matching By MS/MS 1 1 1 67.378 67.527 2 0.0016551 29712 20181213_JW_Orientia_Karp_1_3 136.53 68.16 16097000 6328900 3090700 6677300 0 0 0 0 0 + 9556 811 8176 57948;57949;57950 36825 36825 301 1 VDAQFGGIDQR Unmodified 1204.5836 0.58364985 1706 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 43.105 43.288 2 0.013952 14561 20181213_JW_Orientia_Karp_1_3 89.266 36.784 51067000 21775000 19879000 9413500 0 0 0 0 0 9557 1706 8177 57951;57952;57953 36826 36826 1 VDATEESDLAQQYGVR Unmodified 1779.8275 0.82752153 171 B4DNL5;A0A024R8S5;P07237;F5H8J2;B4DLN6;H7BZ94;B4DUA5;B4DJS0;I3NI03;I3L3U6;B4DNP9 P4HB Protein disulfide-isomerase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.296 50.596 2 4.4082E-114 17777 20181213_JW_Orientia_Karp_2_1 326.79 241.97 105490000 33345000 0 28030000 16215000 10816000 7059100 10025000 0 9558 171 8178 57954;57955;57956;57957;57958;57959;57960 36827;36828;36829;36830;36831;36832;36833 36830 7 VDCTAHSDVCSAQGVR Unmodified 1760.757 0.7570159 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 27.151 27.468 3 0.00036744 7196 20181213_JW_Orientia_Karp_1_1 193.51 155.98 106300000 9140100 77427000 10770000 1286100 2203100 0 5469300 0 9559 25 8179 57961;57962;57963;57964;57965;57966;57967 36834;36835;36836;36837;36838;36839 36834 6 VDCTANTNTCNK Unmodified 1396.5711 0.57111261 516;999 B3KQT9;V9HVY3;P30101;B3KQT2;H7BZJ3 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 no no 0 0 0 0 By MS/MS 1 19.119 19.119 2 4.1741E-05 3746 20181213_JW_Orientia_Karp_1_1 169.21 127.33 2542200 2542200 0 0 0 0 0 0 0 9560 516;999 8180 57968 36840 36840 1 VDCTQHYELCSGNQVR Unmodified 1964.8469 0.84689354 25 A0A024QZV0;Q86UY0;Q6EHZ3;Q658S9;Q8NBS9-2;Q8NBS9 hCG_1811539;TXNDC5;STRF8;DKFZp666I134 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 34.426 34.717 3 5.5111E-07 10138 20181213_JW_Orientia_Karp_1_3 173.19 119.12 94812000 22556000 35088000 23542000 0 1369400 0 12258000 0 9561 25 8181 57969;57970;57971;57972;57973 36841;36842;36843;36844;36845 36843 5 VDEAIALFQK Unmodified 1132.6128 0.61282471 246 A0A024RCN6;P26640;B4DT32 VARS Valine--tRNA ligase yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 56.603 56.87 2 0.004575 23536 20181213_JW_Orientia_Karp_1_1 111.06 85.253 73547000 16840000 11353000 23298000 2206800 9212600 10637000 0 0 9562 246 8182 57974;57975;57976;57977;57978;57979 36846;36847;36848 36846 3 VDFPQDQLTALTGR Unmodified 1559.7944 0.79437091 96 Q0QF37;Q75MT9;Q6FHZ0;A0A024R4K3;P40926;P40926-2;G3XAL0;B3KTM1 MDH2 Malate dehydrogenase;Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 63.827 64.036 2 0.00044642 27471 20181213_JW_Orientia_Karp_1_3 147.24 89.459 32289000 10130000 8790600 9882700 723290 1368000 0 0 1393700 9563 96 8183 57980;57981;57982;57983;57984;57985 36849;36850 36850 2 VDGAEWGVDLPSVEAQLGSHR Unmodified 2221.0764 0.076359426 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;E9PMV1 PLEC Plectin yes no 0 0 0 0 By matching By MS/MS 1 1 64.407 64.581 3 0.027729 27859 20181213_JW_Orientia_Karp_1_3 48.371 20.657 26943000 0 14021000 12922000 0 0 0 0 0 9564 1803 8184 57986;57987 36851 36851 1 VDGLLHSINILWR Unmodified 1534.862 0.86199696 1095 Karp_00244 yes yes 0 0 0 0 By MS/MS By matching 1 1 67.766 67.841 3 0.0083856 30540 20181213_JW_Orientia_Karp_1_1 84.352 59.852 4765100 3350900 0 0 0 1414100 0 0 0 9565 1095 8185 57988;57989 36852 36852 1 VDHNDLVISDFNIK Unmodified 1627.8206 0.82058566 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.858 56.128 3 0.0033457 19537 20181213_JW_Orientia_Karp_3_1 99.669 56.88 237390000 25394000 0 105450000 0 16422000 46181000 43943000 0 9566 1058 8186 57990;57991;57992;57993;57994;57995 36853;36854;36855;36856;36857;36858 36858 6 VDIANFFK Unmodified 952.50182 0.5018177 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 63.846 64.047 2 0.0046038 28168 20181213_JW_Orientia_Karp_1_1 128.61 81.613 200070000 100910000 29111000 37871000 679770 3939400 18368000 0 9185400 9567 1169 8187 57996;57997;57998;57999;58000;58001;58002 36859;36860;36861;36862;36863;36864;36865 36859 7 VDIANFFK Deamidation (NQ) 953.48583 0.48583328 1169 Karp_00623 yes yes 0 1 0 0 By MS/MS By MS/MS 1 1 62.391 62.565 2 0.026595 24426 20181213_JW_Orientia_Karp_2_3 95.909 52.843 0 0 0 0 0 0 0 0 0 9568 1169 8187 58003;58004 36866;36867 36867 567 2 VDIDAPDVSIEGPDAK Unmodified 1639.7941 0.79409613 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 56.843 57.169 2 3.4978E-20 23439 20181213_JW_Orientia_Karp_1_2 222.72 160.96 199610000 42578000 40409000 72622000 20594000 0 15332000 8078800 0 9569 1782 8188 58005;58006;58007;58008;58009;58010;58011 36868;36869;36870;36871;36872;36873;36874 36869 7 VDIDTPDIDIHGPEGK Unmodified 1719.8315 0.83154427 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 1 1 2 52.07 52.426 2;3 0.00063855 18244 20181213_JW_Orientia_Karp_3_1 113.99 79.214 233210000 4227500 7879600 50427000 54991000 43053000 68042000 3953500 634840 9570 1782 8189 58012;58013;58014;58015;58016;58017;58018;58019;58020;58021;58022;58023;58024 36875;36876;36877;36878;36879;36880 36880 6 VDIDTPDINIEGSEGK Unmodified 1700.8105 0.81047448 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.78 57.138 2 1.9396E-23 20041 20181213_JW_Orientia_Karp_3_2 214.48 139.95 193720000 42391000 24766000 42796000 26486000 23909000 11690000 17396000 4288700 9571 1782 8190 58025;58026;58027;58028;58029;58030;58031;58032 36881;36882;36883;36884;36885;36886 36886 5 VDIDVPDVDVQGPDWHLK Unmodified 2046.0058 0.0058202445 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 64.981 65.225 2 0.0006795 22627 20181213_JW_Orientia_Karp_3_1 118.73 1.8285 47975000 9779800 12206000 9331000 1066000 0 3544100 11454000 593750 9572 1782 8191 58033;58034;58035;58036;58037;58038;58039 36887 36887 1 VDIDVPDVNIEGPDAK Unmodified 1694.8363 0.8362953 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 62.445 62.738 2 0.0035307 27201 20181213_JW_Orientia_Karp_1_1 101.43 0 288870000 166010000 41368000 36905000 0 0 43632000 180660 775680 9573 1782 8192 58040;58041;58042;58043;58044;58045 36888;36889;36890 36888 3 VDIDVPDVNIEGPEGK Unmodified 1694.8363 0.8362953 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 62.363 62.715 2 0.00066206 24618 20181213_JW_Orientia_Karp_2_1 144.8 15.852 165060000 0 0 85332000 9647500 49526000 0 0 20554000 9574 1782 8193 58046;58047;58048;58049 36891;36892;36893 36891 3 VDIDVPDVNLEAPEGK Unmodified 1708.8519 0.85194536 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 63.526 63.77 2 0.0011948 24126 20181213_JW_Orientia_Karp_3_2 125.47 92.522 241510000 72221000 55305000 62264000 6958900 34441000 0 327430 9998400 9575 1782 8194 58050;58051;58052;58053;58054;58055;58056 36894;36895;36896;36897;36898;36899;36900 36900 7 VDIEAPDVSLEGPEGK Unmodified 1653.8097 0.8097462 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 58.178 58.48 2 2.5585E-09 24679 20181213_JW_Orientia_Karp_1_1 190.35 154.03 258900000 80434000 68845000 52092000 0 30353000 18508000 261100 8406800 9576 1782 8196 58057;58058;58059;58060;58061;58062;58063;58064 36901;36902;36903;36904;36905;36906;36907 36901 7 VDIEGPDVNIEGPEGK Unmodified 1666.805 0.80499517 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 54.565 54.835 2 1.0575E-06 21982 20181213_JW_Orientia_Karp_1_2 175.21 135.06 568080000 153110000 148360000 174740000 46963000 44906000 0 0 0 9577 1782 8197 58065;58066;58067;58068;58069 36908;36909;36910;36911;36912;36913 36910 6 VDIETPNLEGTLTGPR Unmodified 1710.8788 0.87882882 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 60.976 61.296 2 1.7202E-13 25763 20181213_JW_Orientia_Karp_1_3 209.11 148.94 310160000 95682000 56453000 50401000 22463000 44690000 24222000 702060 15545000 9578 1782 8198 58070;58071;58072;58073;58074;58075;58076;58077 36914;36915;36916 36915 3 VDILDPALLR Unmodified 1123.6601 0.66010926 905 E9PM69;P17980;R4GNH3;A8K781;E9PKD5 PSMC3 26S protease regulatory subunit 6A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 67.832 67.995 2 0.0014366 30033 20181213_JW_Orientia_Karp_1_3 118.18 80.619 17824000 0 2382400 10856000 0 2463500 2121700 0 0 9579 905 8199 58078;58079;58080;58081 36917;36918;36919;36920 36918 4 VDINAPDVDVQGPDWHLK Unmodified 2016.9905 0.99050453 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 59.043 59.363 3 0.00010972 25310 20181213_JW_Orientia_Karp_1_1 130.09 95.815 579470000 73963000 149740000 143850000 40551000 56366000 95670000 361500 18974000 9580 1782 8201 58082;58083;58084;58085;58086;58087;58088;58089 36921;36922;36923;36924;36925;36926;36927;36928 36921 8 VDINAPDVDVR Unmodified 1211.6146 0.61461563 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.214 49.464 2 0.0012305 18741 20181213_JW_Orientia_Karp_1_1 126.03 74.077 206580000 59234000 51218000 31076000 33825000 13072000 18153000 0 0 9581 1782 8202 58090;58091;58092;58093;58094;58095 36929;36930 36929 2 VDINAPDVEVHGPDWHLK Unmodified 2040.0065 0.0064889465 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 53.326 53.595 3 0.029832 21160 20181213_JW_Orientia_Karp_1_2 51.76 15.633 133000000 31888000 53091000 20314000 11664000 0 16045000 0 0 9582 1782 8203 58096;58097;58098;58099;58100 36931;36932 36932 2 VDINAPDVGVQGPDWHLK Unmodified 1958.985 0.98502522 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 58.058 58.377 3 0.0090799 22180 20181213_JW_Orientia_Karp_2_1 77.137 45.261 264050000 94601000 68485000 0 31910000 26545000 22110000 0 20399000 9583 1782 8204 58101;58102;58103;58104;58105;58106 36933;36934;36935;36936 36934 4 VDIPSGTAIMLGK Unmodified 1300.7061 0.70607317 1441 Karp_02410 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 60.405 60.588 2 0.041009 25441 20181213_JW_Orientia_Karp_1_3 72.434 22.326 23836000 13650000 6931600 3254900 0 0 0 0 0 9584 1441 8205 58107;58108;58109 36937 36937 1 VDISAPDVDVHGPDWHLK Unmodified 1998.9799 0.97993984 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 54.449 54.712 4 0.030213 20085 20181213_JW_Orientia_Karp_2_1 56.25 27.67 125260000 42122000 0 0 27033000 23340000 32769000 0 0 9585 1782 8206 58110;58111;58112;58113 36938;36939 36939 2 VDISGNGMGDMGAKMLAKALQINTK 2 Oxidation (M);2 Deamidation (NQ) 2596.2547 0.25465942 500 B2RTQ5;Q5VZK9-2;Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A yes no 0 2 2 2 By matching By matching By MS/MS By matching 1 1 1 1 59.119 59.368 3 0.032827 24895 20181213_JW_Orientia_Karp_1_3 43.349 15.941 21911000 7829700 5243300 7821100 1016600 0 0 0 0 9586 500 8207 58114;58115;58116;58117 36940 36940 1479 0 VDIYLPK Unmodified 846.48511 0.485105 1119 Karp_00311 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 49.845 50.115 2 0.017678 19277 20181213_JW_Orientia_Karp_1_1 106.42 26.476 66111000 22961000 22542000 9523300 9034700 0 2050600 0 0 9587 1119 8208 58118;58119;58120;58121;58122 36941;36942 36941 2 VDLGTLR Unmodified 772.4443 0.44430282 268;267;709;857;1906;2066;861;755 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HLA-A;HLA;HLA-B;HLA-A*03;HLA-All;HLA-A*24;MHC class I HLA-A;HLA-A*0226;HLA-A*02;HLA A;HLA-A*31;HLA-A*33 HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 42.858 43.158 2 0.032154 14615 20181213_JW_Orientia_Karp_1_2 87.754 5.5138 90619000 59678000 15461000 11486000 2136300 288100 0 1569400 0 9588 268;267;709;755;857;1906;2066;861 8209 58123;58124;58125;58126;58127;58128 36943;36944 36944 2 VDLLNQEIEFLK Unmodified 1459.7922 0.79224564 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 71.779 71.874 2 9.4036E-52 28891 20181213_JW_Orientia_Karp_2_2 282.61 194.12 882950000 125790000 89342000 110740000 65799000 140340000 74666000 274210000 2059400 + 9589 804;1657 8210 58129;58130;58131;58132;58133;58134;58135;58136 36945;36946;36947;36948;36949;36950;36951 36949 7 VDLPGSSTTLTK Unmodified 1217.6503 0.65033243 735 H7BZK1;B7Z997;O94875-9;O94875-7;O94875;O94875-11;H7C1R7;B7Z3D7;B3KPU4;H7BXR3;O94875-5;O94875-3;O94875-8;O94875-2;O94875-4;O94875-12;O94875-10;H7BZX1 SORBS2 Sorbin and SH3 domain-containing protein 2 yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 45.359 45.652 2 0.039447 15107 20181213_JW_Orientia_Karp_3_1 73.9 39.728 56638000 18641000 14668000 12263000 3916700 1467000 4803400 879410 0 9590 735 8211 58137;58138;58139;58140;58141;58142;58143 36952 36952 1 VDNALQSGNSQESVTEQDSK Unmodified 2134.9614 0.96144883 272 A0A075B6H6;Q0KKI6;Q5EFE6;V9HW34;Q6PJF2;Q7Z3Y4;Q6PIL8;Q6P5S8;Q6GMX0;Q8TCD0;P01834 IGKC;HEL-213;IGK@ Ig kappa chain C region yes no 0 0 0 0 By MS/MS By MS/MS 1 1 35.467 35.467 2 1.0412E-61 11010 20181213_JW_Orientia_Karp_1_1 270.95 207.35 8125200 8125200 0 0 0 0 0 0 0 9591 272 8212 58144;58145 36953;36954 36953 2 VDNDENEHQLSLR Unmodified 1567.7227 0.72266253 1562 P06748-2;P06748;A4ZU86;P06748-3;E5RGW4 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 32.62 32.942 3 0.0029245 8815 20181213_JW_Orientia_Karp_2_3 102.33 56.441 388800000 69266000 72252000 88261000 98866000 14415000 17194000 28548000 0 9592 1562 8213 58146;58147;58148;58149;58150;58151;58152 36955;36956;36957;36958;36959;36960;36961;36962 36960 8 VDPEIQNVK Unmodified 1040.5502 0.55022446 804;1657;814 CON__Q3TTY5;CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 35.013 35.356 2 0.0030099 10175 20181213_JW_Orientia_Karp_3_1 113.71 60.54 186870000 43727000 62446000 43551000 0 13437000 0 20276000 3430800 + 9593 814;804;1657 8214 58153;58154;58155;58156;58157;58158;58159 36963;36964;36965;36966;36967;36968;36969;36970 36969 8 VDQLTAQLADLAAR Unmodified 1483.7995 0.79945628 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;Q5JQ13 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 1 63.751 63.974 2 1.3165E-07 24301 20181213_JW_Orientia_Karp_3_2 184.96 102.94 89287000 33047000 15639000 28939000 0 6576500 0 559110 4525700 9594 19 8215 58160;58161;58162;58163;58164;58165;58166 36971;36972;36973;36974;36975 36975 5 VDSLLENLEK Unmodified 1158.6132 0.61321864 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;Q6PKD2;P07910-3;O60812;B7ZW38;B2RXH8;G3V5V7;B4DQQ2;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;P07910-4;G3V2D6 HNRNPC;HNRPCL1;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.349 55.665 2 4.8728E-12 22916 20181213_JW_Orientia_Karp_1_1 212.21 108.16 454900000 76006000 114340000 65558000 51469000 66450000 80286000 0 797120 9595 400;452 8216 58167;58168;58169;58170;58171;58172;58173 36976;36977;36978;36979;36980;36981;36982;36983 36976 8 VDSSYDGIHDITDLDTDLK Unmodified 2120.975 0.97497363 1452 Karp_02533 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 3 2 60.153 60.468 2;3 1.6286E-17 25560 20181213_JW_Orientia_Karp_1_2 204.18 142.02 1413100000 228540000 218950000 523670000 97752000 140110000 151290000 37595000 15230000 9596 1452 8217 58174;58175;58176;58177;58178;58179;58180;58181;58182;58183;58184;58185;58186;58187;58188;58189;58190;58191;58192 36984;36985;36986;36987;36988;36989;36990;36991;36992;36993;36994;36995 36985 11 VDTNAPDLSLEGPEGK Unmodified 1640.7893 0.78934511 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.16 51.526 2 1.9129E-13 18308 20181213_JW_Orientia_Karp_2_1 200.76 97.549 285910000 83371000 108700000 0 30479000 20694000 17952000 18270000 6446200 9597 1782 8218 58193;58194;58195;58196;58197;58198;58199 36996;36997;36998;36999;37000;37001;37002 36998 7 VDVCQVLWHK Unmodified 1282.6492 0.64922699 1242 Karp_00909 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 50.017 50.291 3 0.038313 17641 20181213_JW_Orientia_Karp_2_1 63.184 29.955 51630000 18147000 1712400 24494000 7276800 0 0 0 0 9598 1242 8219 58200;58201;58202;58203 37003 37003 1 VDVDVPDVNIEGPDAK Unmodified 1680.8206 0.82064524 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 59.182 59.502 2 2.9178E-06 20590 20181213_JW_Orientia_Karp_3_1 166.62 108.4 717890000 175650000 131110000 177110000 49460000 70115000 66305000 1586300 46547000 9599 1782 8220 58204;58205;58206;58207;58208;58209;58210;58211 37004;37005;37006;37007;37008;37009;37010;37011 37010 8 VDVECPDVNIEGPEGK Unmodified 1755.7985 0.79852959 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 51.376 51.738 2 0.032422 20209 20181213_JW_Orientia_Karp_1_1 74.649 46.735 24884000 5408200 7794800 4676400 0 0 0 6340400 664290 9600 1782 8221 58212;58213;58214;58215;58216 37012 37012 1 VDVEGPDVNIEGPEGK Unmodified 1652.7893 0.78934511 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 2 51.142 51.459 2 1.5804E-19 20026 20181213_JW_Orientia_Karp_1_1 211.83 148.21 314770000 108110000 80026000 81535000 25105000 1561900 0 18422000 0 9601 1782 8222 58217;58218;58219;58220;58221;58222;58223 37013;37014 37013 2 VDVEMTPYDLNMGR 2 Oxidation (M) 1670.728 0.72800718 1136 Karp_00448 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 48.542 48.852 2 1.3605E-05 17869 20181213_JW_Orientia_Karp_1_3 172.17 125.38 107880000 28725000 24962000 24366000 4696300 7230000 0 0 17902000 9602 1136 8223 58224;58225;58226;58227;58228;58229 37015;37016;37017;37018 37017 669;670 4 VDVEMTPYDLNMGR Oxidation (M) 1654.7331 0.73309256 1136 Karp_00448 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 54.939 55.308 2 2.1319E-08 21944 20181213_JW_Orientia_Karp_1_3 193.3 147.39 53199000 0 14680000 25280000 2498500 4950900 4645400 0 1143700 9603 1136 8223 58230;58231;58232;58233;58234;58235 37019;37020;37021;37022;37023 37020 669;670 5 VDVEVPDVSLEGPEGK Unmodified 1667.8254 0.82539626 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 61.014 61.334 2 2.8959E-13 21357 20181213_JW_Orientia_Karp_3_1 195.72 151.41 960130000 199720000 260660000 204810000 61213000 107100000 76500000 23185000 26940000 9604 1782 8224 58236;58237;58238;58239;58240;58241;58242;58243 37024;37025;37026;37027;37028;37029;37030;37031;37032;37033 37031 10 VDVIPVNLPGEHGQR Unmodified 1628.8635 0.86345352 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.454 51.755 3 0.024084 18445 20181213_JW_Orientia_Karp_2_2 66.533 30.511 850110000 265060000 181460000 188350000 93608000 45193000 72564000 0 3869600 9605 85 8225 58244;58245;58246;58247;58248;58249;58250 37034;37035;37036;37037;37038 37036 5 VDVNAPDVQAPDWHLK Unmodified 1802.8951 0.89514758 1782 Q09666;Q8N274 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.216 54.532 3 0.00051643 19978 20181213_JW_Orientia_Karp_2_1 122.75 95.097 363840000 103470000 123490000 43025000 30397000 17648000 40667000 0 5139800 9606 1782 8226 58251;58252;58253;58254;58255;58256;58257 37039;37040;37041;37042;37043;37044 37042 6 VDVSAPDVEAHGPEWNLK Unmodified 1961.9483 0.94830537 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 52.675 52.917 3 0.0040127 19148 20181213_JW_Orientia_Karp_2_1 90.259 61.939 356840000 64878000 73467000 56009000 49632000 55946000 56911000 0 0 9607 1782 8227 58258;58259;58260;58261;58262;58263;58264 37045;37046;37047;37048 37048 4 VDVSAPDVEMQGPDWNLK Unmodified 1998.9357 0.93569177 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 64.648 64.828 2 2.4856E-09 28558 20181213_JW_Orientia_Karp_1_1 176.4 139.25 50954000 21384000 18069000 0 1035900 5152600 5312600 0 0 9608 1782 8228 58265;58266;58267;58268;58269 37049;37050;37051 37049 3 VDVSAPDVEMQGPDWNLK Oxidation (M) 2014.9306 0.93060639 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 58.892 59.155 2 0.00077838 22787 20181213_JW_Orientia_Karp_2_3 116.63 69.839 53439000 0 19701000 14910000 0 10393000 8435700 0 0 9609 1782 8228 58270;58271;58272;58273 37052;37053;37054;37055;37056 37056 1431 5 VEAAEIVEGEDSAYSVR Unmodified 1822.8585 0.85848731 1797 Q14315-2;Q14315;Q59H94 FLNC Filamin-C yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 52.544 52.727 2 0.017718 20662 20181213_JW_Orientia_Karp_1_2 85.45 32.416 28602000 12473000 9788000 6340600 0 0 0 0 0 9610 1797 8229 58274;58275;58276 37057 37057 1 VEADVSLPSMQGDLK Oxidation (M) 1603.7763 0.77633758 1902 Q8IVF2-3;Q8IVF2 AHNAK2 Protein AHNAK2 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.346 48.691 2 0.0015461 17617 20181213_JW_Orientia_Karp_1_3 125.28 47.69 74119000 14396000 17570000 13748000 8107500 8381500 5604400 636880 5675100 9611 1902 8230 58277;58278;58279;58280;58281;58282;58283;58284 37058;37059;37060;37061;37062;37063;37064;37065 37060 1495 8 VEAPSLDVHMDSPDINIEGPDVK Unmodified 2476.1792 0.17916952 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 62.322 62.512 3 0.0009437 26979 20181213_JW_Orientia_Karp_1_2 115.54 96.326 141800000 65711000 35486000 18268000 0 14517000 7814400 0 0 9612 1782 8231 58285;58286;58287;58288;58289 37066;37067;37068 37067 3 VEAPSLDVHMDSPDINIEGPDVK Oxidation (M) 2492.1741 0.17408414 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.888 57.233 3 4.6783E-06 21645 20181213_JW_Orientia_Karp_2_1 131.82 103.9 201670000 32941000 33311000 35895000 16636000 28361000 26391000 9004300 19132000 9613 1782 8231 58290;58291;58292;58293;58294;58295;58296;58297 37069;37070;37071;37072;37073;37074 37070 1432 6 VEAQLQELQVK Unmodified 1283.7085 0.70851601 47 A0A024R1N1;P35579;Q86XU5 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.316 46.636 2 4.494E-14 16610 20181213_JW_Orientia_Karp_1_2 225.22 148.16 361450000 81850000 111730000 85108000 17293000 15090000 16021000 2071200 32289000 9614 47 8232 58298;58299;58300;58301;58302;58303;58304;58305 37075;37076;37077;37078;37079;37080;37081;37082 37076 8 VEDALHATR Unmodified 1010.5145 0.51450765 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 23.324 23.718 2 0.0011662 5095 20181213_JW_Orientia_Karp_3_1 129.38 84.935 50761000 0 6969400 4830800 9017000 7995100 5913700 7284200 8751100 9615 1296 8233 58306;58307;58308;58309;58310;58311;58312;58313 37083;37084;37085;37086;37087;37088;37089;37090 37089 8 VEDFFNQSTAK Unmodified 1284.5986 0.59863121 1452 Karp_02533 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.258 45.578 2 1.9022E-07 15097 20181213_JW_Orientia_Karp_2_1 190.57 124.5 953680000 166290000 211120000 250490000 62970000 114950000 93736000 16418000 37706000 9616 1452 8234 58314;58315;58316;58317;58318;58319;58320;58321 37091;37092;37093;37094;37095;37096;37097;37098;37099 37094 9 VEDFFNQSTAK Deamidation (NQ) 1285.5826 0.5826468 1452 Karp_02533 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 48.39 48.766 2 0.001573 17664 20181213_JW_Orientia_Karp_1_3 131.42 88.171 72403000 20055000 0 15085000 22440000 0 4651500 51913 10120000 9617 1452 8234 58322;58323;58324;58325;58326;58327;58328 37100;37101;37102 37101 981 3 VEDFGNAWK Unmodified 1064.4927 0.49270958 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 45.601 45.835 2 0.0042694 16098 20181213_JW_Orientia_Karp_1_2 107.69 62.713 211820000 63558000 78972000 54301000 2038800 10230000 2717900 0 0 9618 1466;1549 8235 58329;58330;58331;58332;58333;58334 37103;37104;37105;37106 37103 4 VEDFWTK Unmodified 923.43888 0.43888309 1192 Karp_00723 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.222 46.542 2 0.011919 16347 20181213_JW_Orientia_Karp_1_3 123.69 88.071 275290000 94827000 76719000 56913000 23534000 10424000 11395000 339400 1138400 9619 1192 8236 58335;58336;58337;58338;58339;58340;58341;58342 37107;37108;37109;37110;37111;37112;37113 37109 7 VEDLFLTFAK Unmodified 1181.6332 0.6332258 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 1 67.773 67.972 2 0.0049713 29926 20181213_JW_Orientia_Karp_1_3 128.86 87.828 0 0 0 0 0 0 0 0 0 9620 316 8237 58343 37114 37114 1 VEDMAELTCLNEASVLHNLK Oxidation (M) 2301.0981 0.098082425 47;944 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;E7ERA5;G1UI33 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 57.031 57.393 3 0.0050241 24057 20181213_JW_Orientia_Karp_1_1 93.381 52.888 84426000 32505000 20510000 13933000 0 0 0 2823200 14655000 9621 47;944 8238 58344;58345;58346;58347;58348 37115 37115 56 1 VEDYEPYPDDGMGYGDYPK Oxidation (M) 2224.8783 0.87829605 909 K9J7I2;E9PQ68;O95169-3;O95169-2;O95169 NDUFB8 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial yes no 0 0 1 0 By MS/MS 1 51.455 51.805 2 1.314E-10 19991 20181213_JW_Orientia_Karp_1_2 188.48 143.12 0 0 0 0 0 0 0 0 0 9622 909 8239 58349 37116 37116 520 1 VEEEEER Unmodified 918.39306 0.39305511 47;944 A0A024R1N1;P35579;Q86XU5;P35579-2;F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 15.025 15.295 2 0.015426 2460 20181213_JW_Orientia_Karp_3_1 111.04 30.573 7698100 1621900 3247000 1879900 480950 0 0 468370 0 9623 47;944 8240 58350;58351;58352;58353;58354 37117;37118;37119;37120;37121 37121 5 VEEILEQADYLYESGETEK Unmodified 2244.0322 0.032154154 869 H0YB83;E5RH53;Q96DB5-3;Q96DB5-2;Q96DB5;E5RGC8 RMDN1 Regulator of microtubule dynamics protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 64.194 64.194 2 1.4818E-16 28076 20181213_JW_Orientia_Karp_1_2 205.68 174.02 3292200 3292200 0 0 0 0 0 0 0 9624 869 8241 58355;58356;58357 37122;37123;37124 37123 3 VEELNDITEK Unmodified 1188.5874 0.58739782 1081 Karp_00113 no no 0 0 0 0 By MS/MS By matching 1 1 39.956 40.537 2 0.00021146 12632 20181213_JW_Orientia_Karp_3_1 144.77 0 7027400 0 0 0 0 0 0 6142100 885390 9625 1081 8242 58358;58359 37125 37125 1 VEELNNITEK Deamidation (NQ) 1188.5874 0.58739782 1083;1086 Karp_00131;Karp_01301;Karp_00209 no no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 40.231 40.431 2 6.182E-07 12423 20181213_JW_Orientia_Karp_2_1 192.64 12.548 29086000 5379300 0 7568100 10928000 5210000 0 0 0 9626 1083;1086 8243 58360;58361;58362;58363 37126;37127;37128;37129 37128 434;437 4 VEELNNITEK Unmodified 1187.6034 0.60338224 1083;1086 Karp_00131;Karp_01301;Karp_00209 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 37.48 37.93 2 0.0038748 11810 20181213_JW_Orientia_Karp_1_2 105.98 46.994 9437300 0 4956100 0 1087500 0 759880 2633800 0 9627 1083;1086 8243 58364;58365;58366;58367;58368 37130;37131 37131 2 VEELSDITEK Unmodified 1161.5765 0.57649879 1151;1356;1068 Karp_00028;Karp_02444;Karp_00527;Karp_02508;Karp_02160;Karp_02068;Karp_00983;Karp_01060;Karp_01793;Karp_01685 no no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 41.928 42.258 2 6.3568E-05 13326 20181213_JW_Orientia_Karp_2_1 154.01 71.724 76541000 24013000 15832000 12201000 8831700 3478600 0 11776000 408630 9628 1068;1151;1356 8244 58369;58370;58371;58372;58373;58374;58375;58376 37132;37133;37134;37135 37133 4 VEELSYVFMLELK Oxidation (M) 1614.8215 0.82149686 2029 yes yes 0 0 1 0 By MS/MS 1 42.461 42.712 2 0.023362 13844 20181213_JW_Orientia_Karp_2_3 80.688 6.7034 8215200 0 0 0 0 0 8215200 0 0 + 9629 2029 8245 58377 37136 37136 1553 1 VEEQEPELTSTPNFVVEVIK Unmodified 2286.1631 0.16310875 374 A8K651;Q07021;I3L3Q7;I3L3B0 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 71.018 71.125 2 2.6446E-17 25776 20181213_JW_Orientia_Karp_3_1 193.98 138.87 129850000 19660000 50040000 23734000 6130800 7891600 6682900 15710000 0 9630 374 8246 58378;58379;58380;58381;58382;58383;58384 37137;37138;37139;37140;37141;37142 37142 6 VEEVGPYTYR Unmodified 1211.5823 0.58225287 260 A0A024RDG6;Q14108;Q14108-2;D6RDG0 SCARB2 Lysosome membrane protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 41.427 41.72 2 5.1058E-07 14234 20181213_JW_Orientia_Karp_1_1 191.17 113.25 301710000 86928000 80876000 49153000 18516000 11657000 13613000 40966000 0 9631 260 8247 58385;58386;58387;58388;58389;58390;58391;58392 37143;37144;37145;37146;37147;37148;37149;37150;37151 37143 9 VEFATLQEALAHALTEK Unmodified 1869.9836 0.98362824 118 A0A024R5M9;Q4LE64;Q14980-2;Q14980;Q59HB8;Q7Z757;Q14980-4;Q14980-3;A0A024R5G4;Q9UPG3 NUMA1;NUMA1 variant protein;NuMA Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 70.906 71.023 3 0.023733 25730 20181213_JW_Orientia_Karp_3_1 58.079 28.724 8647400 0 0 0 0 1416300 1101000 6130200 0 9632 118 8248 58393;58394;58395 37152;37153 37153 2 VEFEELCADLFER Unmodified 1655.7501 0.75012283 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;E9PJ21;Q05D91;Q6IN67;Q9Y4L1-2;A0A024R3G0 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 71.09 71.211 2 0.00096829 32149 20181213_JW_Orientia_Karp_1_3 141.73 90.634 22962000 6425100 7077900 3867500 0 0 0 3700700 1891100 9633 545 8249 58396;58397;58398;58399;58400;58401 37154;37155;37156;37157 37155 4 VEFMDDTSR Oxidation (M) 1114.4601 0.46008882 448 B2R4R9;P62857 RPS28 40S ribosomal protein S28 yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.362 32.72 2 0.0032737 8149 20181213_JW_Orientia_Karp_3_2 109.29 66.692 58512000 9727000 11434000 9595300 7058400 5616200 4665200 8225800 2189600 9634 448 8250 58402;58403;58404;58405;58406;58407;58408;58409 37158;37159;37160;37161;37162;37163 37163 296 6 VEFMDDTSR Unmodified 1098.4652 0.4651742 448 B2R4R9;P62857 RPS28 40S ribosomal protein S28 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 41.766 42.096 2 0.011993 14021 20181213_JW_Orientia_Karp_1_2 90.15 18.012 45422000 12984000 11288000 10447000 3378600 1888100 0 4838900 597760 9635 448 8250 58410;58411;58412;58413;58414;58415;58416 37164;37165 37164 2 VEGDMQVPDLDIK Oxidation (M) 1473.7021 0.70211 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.466 51.832 2 0.00066485 17791 20181213_JW_Orientia_Karp_3_2 145.83 89.201 152370000 42161000 35809000 0 18545000 14977000 14617000 20847000 5412600 9636 1782 8251 58417;58418;58419;58420;58421;58422;58423 37166;37167;37168;37169;37170;37171;37172 37172 1433 7 VEGDMQVPDLDIK Unmodified 1457.7072 0.70719538 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 58.659 58.952 2 3.8099E-05 24962 20181213_JW_Orientia_Karp_1_1 173.19 107.13 99892000 19566000 34327000 28107000 5600300 5321800 5523700 1445900 0 9637 1782 8251 58424;58425;58426;58427;58428;58429;58430 37173;37174;37175;37176 37173 4 VEGFPTIYFAPSGDK Unmodified 1626.793 0.79297392 1594 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 67.409 67.596 2 0.00031303 29733 20181213_JW_Orientia_Karp_1_3 145.14 72.936 66143000 23688000 7608500 17031000 819420 8003200 2553300 0 6440500 9638 1594 8252 58431;58432;58433;58434;58435;58436;58437 37177;37178;37179;37180 37179 4 VEGGTPLFTLR Unmodified 1188.6503 0.65027285 134 B7Z6J1;Q86SW4;Q6IBS5;A0A024R6C9;P36957;Q86TW7;Q86TQ8;Q16187;P36957-2 DLST;E2k Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 56.742 57.11 2 0.0015339 23500 20181213_JW_Orientia_Karp_1_2 121.61 73.739 67237000 0 16792000 31543000 4238300 5949000 6694600 0 2019400 9639 134 8253 58438;58439;58440;58441;58442;58443 37181;37182;37183 37181 3 VEGPAFTDAIR Unmodified 1174.5982 0.59823728 158 A0A024R872;Q96TA1-2;Q96TA1 C9orf88;FAM129B Niban-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 49.692 50.044 2 0.018862 18625 20181213_JW_Orientia_Karp_1_3 85.958 38.355 36687000 0 20591000 10631000 0 0 3168900 0 2295600 9640 158 8254 58444;58445;58446;58447;58448 37184;37185;37186;37187 37186 4 VEGTEPTTAFNLFVGNLNFNK Unmodified 2311.1485 0.14846174 88 B3KM80;Q6ZS99;B3KTP9;A0A024R4A0;P19338 NCL Nucleolin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 2 1 74.097 74.116 2;3 3.9506E-05 34348 20181213_JW_Orientia_Karp_1_1 132.97 98.198 78286000 39070000 33432000 0 2311600 0 3071800 0 399840 9641 88 8255 58449;58450;58451;58452;58453;58454;58455;58456 37188;37189;37190 37188 3 VEHGSVALPAIMR Unmodified 1378.7391 0.73910463 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By matching By MS/MS 1 1 47.449 47.624 3 0.03906 17203 20181213_JW_Orientia_Karp_1_2 48.115 15.591 27633000 15409000 12224000 0 0 0 0 0 0 9642 2016 8256 58457;58458 37191 37191 1 VEHNQSYSQAGITETEWTSGSSK Unmodified 2525.1306 0.13063942 222 A0A024RBE7;P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 41.054 41.325 3 0.015363 13629 20181213_JW_Orientia_Karp_1_2 79.455 56.008 66071000 18327000 11394000 27045000 0 3613800 0 5689700 0 9643 222 8257 58459;58460;58461;58462;58463 37192;37193;37194;37195 37193 4 VEHSDLSFSK Unmodified 1147.551 0.55095274 327 H0YLF3;A6XND9;F5H6I0;B4E0X1;P61769;A6XMH4 B2M Beta-2-microglobulin;Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 2 2 29.863 30.297 2;3 0.002302 6938 20181213_JW_Orientia_Karp_2_2 103.31 22.857 452840000 122570000 130680000 67364000 0 55023000 10883000 49300000 17022000 9644 327 8258 58464;58465;58466;58467;58468;58469;58470;58471;58472;58473;58474;58475 37196;37197;37198;37199;37200;37201;37202;37203 37200 8 VELFTIATPK Unmodified 1117.6383 0.63831118 1364 Karp_01859 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.618 59.829 2 5.4495E-12 24922 20181213_JW_Orientia_Karp_1_3 210.6 112.14 83178000 30765000 15401000 14704000 0 10613000 11695000 0 0 9645 1364 8259 58476;58477;58478;58479;58480;58481 37204;37205;37206;37207;37208;37209 37206 6 VELPSEEQVSGSQGPSEEK Unmodified 2014.9331 0.93310881 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 43.316 43.678 2 2.1803E-05 14899 20181213_JW_Orientia_Karp_1_2 174.24 115.04 18156000 9149200 5268600 0 1720000 0 0 2018000 0 9646 1764 8260 58482;58483;58484;58485;58486 37210;37211;37212 37211 3 VELQELNDR Deamidation (NQ) 1115.5459 0.54586736 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;Q9H319;B4DUI0 HEL113;VIM;tmp_locus_29;DES Vimentin;Desmin yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 3 1 1 1 43.095 43.352 2 0.0014549 14541 20181213_JW_Orientia_Karp_1_2 142 61.54 684290000 253070000 202710000 107060000 31622000 17741000 10955000 56841000 4283800 9647 1571 8261 58487;58488;58489;58490;58491;58492;58493;58494;58495;58496;58497;58498;58499;58500;58501 37213;37214;37215;37216;37217;37218;37219;37220 37214 1055 8 VELQELNDR Unmodified 1114.5619 0.56185177 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;Q9H319;B4DUI0 HEL113;VIM;tmp_locus_29;DES Vimentin;Desmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 40.451 40.793 2 4.2451E-09 13275 20181213_JW_Orientia_Karp_1_2 216.12 90.809 2733300000 0 765850000 1025300000 259230000 198760000 45113000 439060000 0 9648 1571 8261 58502;58503;58504;58505;58506;58507 37221;37222;37223;37224;37225;37226 37221 6 VENLVDQLNKSQESNVSIQK 3 Deamidation (NQ) 2274.1227 0.1227005 978 Q6MZL5;H0YJ97;Q15643 DKFZp686C06243;TRIP11 Thyroid receptor-interacting protein 11 yes no 0 3 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 35.322 35.655 4 0.039462 10755 20181213_JW_Orientia_Karp_1_2 40.179 12.459 42015000 6213800 8363400 3055800 8629000 10318000 0 5434900 0 9649 978 8262 58508;58509;58510;58511;58512;58513 37227 37227 1743;1744 1 VENMSMRLEEVNEREHSMK 2 Deamidation (NQ) 2349.0399 0.039915619 284 H7BYP1;G5E9G1;A2A3F3;A2A3F4;E9PBI7;A2A3F7;Q9HCF6-10;Q9HCF6-8;Q9HCF6-4;Q9HCF6-2;Q9HCF6-5;Q9HCF6-6;Q9HCF6-3;Q9HCF6-7;Q9HCF6;Q9HCF6-11 TRPM3 Transient receptor potential cation channel subfamily M member 3 yes no 0 2 0 2 By MS/MS By matching By matching 1 1 1 60.512 60.662 2 0.0098714 25916 20181213_JW_Orientia_Karp_1_1 92.781 24.748 28859000 19354000 0 5933200 0 0 3571300 0 0 9650 284 8263 58514;58515;58516 37228 37228 112;113 1 VENSMVGQMTNYDK 2 Oxidation (M) 1646.6916 0.69162167 1219 Karp_00886 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 27.659 28.018 2 7.0098E-12 6995 20181213_JW_Orientia_Karp_1_3 201.09 152.11 30608000 5997300 0 10949000 3079900 2523500 2362700 3291900 2403400 9651 1219 8264 58517;58518;58519;58520;58521;58522;58523;58524 37229;37230;37231;37232;37233;37234;37235;37236 37231 783;784 8 VENSMVGQMTNYDK 2 Oxidation (M);Deamidation (NQ) 1647.6756 0.67563726 1219 Karp_00886 yes yes 0 1 2 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 30.246 30.656 2 0.0014843 8216 20181213_JW_Orientia_Karp_1_3 124.21 91.149 8217700 2183800 2704000 2215500 369960 0 0 234840 509660 9652 1219 8264 58525;58526;58527;58528;58529;58530 37237;37238;37239;37240 37240 624 783;784 4 VENSMVGQMTNYDK Oxidation (M) 1630.6967 0.69670705 1219 Karp_00886 yes yes 0 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 36.075 36.462 2 0.002978 11060 20181213_JW_Orientia_Karp_1_2 115.57 62.451 22201000 10653000 8337300 0 1219900 0 0 1990600 0 9653 1219 8264 58531;58532;58533;58534 37241 37241 783;784 1 VENSMVGQMTNYDK Unmodified 1614.7018 0.70179243 1219 Karp_00886 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 44.472 44.772 2 5.2445E-46 15400 20181213_JW_Orientia_Karp_1_3 264.61 212.85 31277000 10120000 9561200 10241000 0 0 0 1354800 0 9654 1219 8264 58535;58536;58537;58538 37242;37243 37243 2 VEPGLGADNSVVR Unmodified 1311.6783 0.67827852 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 42.687 42.862 2 0.034664 14432 20181213_JW_Orientia_Karp_1_2 76.165 51.31 110430000 56943000 27752000 23954000 0 1776900 0 0 0 9655 1615 8265 58539;58540;58541;58542 37244 37244 1 VEPNTLFNSADLHSISQK Unmodified 1999.0011 0.0010692176 1444 Karp_02422 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 52.673 53.019 3 0.042123 18516 20181213_JW_Orientia_Karp_3_1 55.864 19.227 462060000 70660000 120830000 77745000 49247000 66276000 54486000 19700000 3115500 9656 1444 8266 58543;58544;58545;58546;58547;58548;58549;58550 37245 37245 1 VEQESYIEESLK Unmodified 1452.6984 0.69840484 1132;1373;1258;1265;1114 Karp_00298;Karp_00384;Karp_00536;Karp_01914;Karp_02350;Karp_01437;Karp_00991;Karp_02171;Karp_02493;Karp_01306;Karp_01677;Karp_01055;Karp_02464;Karp_01711;Karp_02079 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 46.857 47.106 2 2.3655E-07 17261 20181213_JW_Orientia_Karp_1_1 185.25 126.18 96338000 43625000 25543000 18998000 8171400 0 0 0 0 9657 1114;1132;1258;1265;1373 8267 58551;58552;58553;58554;58555;58556;58557 37246;37247;37248;37249;37250;37251;37252 37246 7 VEQIAAIAQELNELDYYDSHNVNTR Unmodified 2904.389 0.38897937 1509 O43707;O43707-2;Q96BG6 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.242 69.386 3 7.3312E-05 27340 20181213_JW_Orientia_Karp_3_2 106.45 81.041 201620000 61097000 0 37829000 2014600 20881000 11115000 51105000 17574000 9658 1509 8268 58558;58559;58560;58561;58562;58563;58564;58565 37253;37254;37255;37256;37257;37258;37259;37260;37261;37262 37262 10 VEQLQQEYTEMK Oxidation (M) 1540.7079 0.70792366 1843 Q59GW5;D3DTY9;Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 0 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 35.701 36.001 2 0.00064904 10725 20181213_JW_Orientia_Karp_1_3 140.63 61.973 17995000 3360800 6499400 6863000 0 0 0 1271700 0 9659 1843 8269 58566;58567;58568;58569 37263 37263 1465 1 VEQVLSLEPQHELK Unmodified 1647.8832 0.88318591 870 E5RK64;Q53XM7;O95292-2;O95292 VAPB Vesicle-associated membrane protein-associated protein B/C yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 46.328 46.615 3 0.033772 16357 20181213_JW_Orientia_Karp_1_3 84.468 51.844 15008000 0 0 11233000 0 1534900 0 0 2240100 9660 870 8270 58570;58571;58572 37264 37264 1 VESLESLYFTPIPAR Unmodified 1720.9036 0.903587 118 A0A024R5M9;Q4LE64;Q14980-2;Q14980;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q14980-5 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By matching By MS/MS 1 1 70.058 70.107 2 0.015981 31320 20181213_JW_Orientia_Karp_1_3 88.187 50.506 10677000 5037700 0 5639700 0 0 0 0 0 9661 118 8271 58573;58574 37265 37265 1 VESLQEEIAFLK Unmodified 1404.75 0.75004648 1571 V9HWE1;P08670;B0YJC4;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 65.056 65.247 2 1.7112E-39 24591 20181213_JW_Orientia_Karp_3_2 257.09 133.98 5692400000 1174700000 2375200000 1289300000 57116000 460810000 331510000 0 3767500 9662 1571 8272 58575;58576;58577;58578;58579;58580;58581;58582;58583;58584;58585;58586 37266;37267;37268;37269;37270;37271;37272;37273;37274;37275 37274 9 VESLQEEIAFLKK Unmodified 1532.845 0.84500949 1571 V9HWE1;P08670;B0YJC4;B3KRK8;B0YJC5;Q5JVS8 HEL113;VIM Vimentin yes no 0 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 54.559 54.839 3 0.03067 22021 20181213_JW_Orientia_Karp_1_2 62.732 26.625 26566000 7681000 6727100 0 2895400 5829200 3432900 0 0 9663 1571 8273 58587;58588;58589;58590;58591 37276 37276 1 VESVFETLVEDSAEEESTLTK Unmodified 2341.106 0.10604738 545 B7Z2N4;B3KXH0;Q9Y4L1;B7Z766;B7Z602;E9PJ21;Q05D91;Q6IN67;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By matching 1 1 73.662 73.661 3 0.029523 34088 20181213_JW_Orientia_Karp_1_1 46.962 10.511 30140000 21759000 0 8380900 0 0 0 0 0 9664 545 8274 58592;58593 37277 37277 1 VETGVLK Unmodified 744.43815 0.43815481 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53G89;B4E2C5;Q16577;Q14222 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 29.978 30.24 2 0.021315 8453 20181213_JW_Orientia_Karp_1_1 100.74 19.361 32657000 19776000 11548000 0 979990 0 353340 0 0 9665 1746 8275 58594;58595;58596;58597;58598 37278;37279;37280 37278 3 VETGVLKPGMVVTFAPVNVTTEVK Oxidation (M) 2530.3717 0.37166174 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53G89;B4E2C5;Q14222 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 61.353 61.656 3 0.0010404 26704 20181213_JW_Orientia_Karp_1_1 103.35 71.27 470360000 207420000 125490000 0 0 45009000 40686000 11164000 40584000 9666 1746 8276 58599;58600;58601;58602;58603;58604 37281;37282;37283;37284;37285;37286 37281 1372 5 VETGVLKPGMVVTFAPVNVTTEVK Unmodified 2514.3767 0.37674711 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q8IUB0;B4DV42;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q6P4C9;Q504Z0;Q9NZS6;Q53G89;B4E2C5;Q14222 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 65.229 65.429 3 0.0079326 28233 20181213_JW_Orientia_Karp_1_3 94.456 60.826 1132600000 345730000 267860000 310130000 0 0 0 208880000 0 9667 1746 8276 58605;58606;58607;58608 37287;37288 37288 2 VETVILLDQLR Unmodified 1297.7606 0.76055158 1290 Karp_01163 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 65.226 65.391 2 0.0001669 29031 20181213_JW_Orientia_Karp_1_1 157.24 90.974 14380000 9161000 0 2664300 0 0 1924800 0 630240 9668 1290 8277 58609;58610;58611;58612 37289;37290;37291 37289 3 VEVDPILR Unmodified 939.53893 0.53893149 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.213 49.514 2 0.008381 18862 20181213_JW_Orientia_Karp_1_1 109.01 44.748 148630000 36010000 32626000 13466000 33937000 9583300 19460000 0 3545400 9669 1428 8278 58613;58614;58615;58616;58617;58618;58619 37292;37293;37294;37295;37296;37297;37298 37292 7 VEVERDNLAEDIMR Oxidation (M) 1703.8148 0.81484835 1571 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 HEL113;VIM Vimentin yes no 0 0 1 1 By MS/MS 1 42.4 42.75 3 0.038712 14406 20181213_JW_Orientia_Karp_1_2 69.314 36.837 0 0 0 0 0 0 0 0 0 9670 1571 8279 58620 37299 37299 1188 1 VEVISPNEYMGDIIGDLNSR Oxidation (M) 2236.0682 0.068162505 1094 Karp_00243 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 66.024 66.225 2 1.7461E-62 25879 20181213_JW_Orientia_Karp_2_2 271.45 211.09 347560000 82726000 91195000 51907000 0 27678000 16340000 58694000 19025000 9671 1094 8280 58621;58622;58623;58624;58625;58626;58627 37300;37301;37302;37303;37304;37305;37306 37303 611 7 VEVISPNEYMGDIIGDLNSR Oxidation (M);Deamidation (NQ) 2237.0522 0.05217809 1094 Karp_00243 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 1 67.613 67.814 2 4.323E-08 30340 20181213_JW_Orientia_Karp_1_1 163.34 107.57 127070000 41298000 14856000 36751000 0 10487000 4586000 10297000 8792700 9672 1094 8280 58628;58629;58630;58631;58632;58633;58634;58635 37307;37308;37309;37310;37311;37312 37308 447 611 6 VEVISPNEYMGDIIGDLNSR Unmodified 2220.0732 0.073247883 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.494 73.524 3 0.00024948 29743 20181213_JW_Orientia_Karp_3_2 127.67 100.13 308640000 101010000 81378000 21220000 0 27058000 15688000 52467000 9819000 9673 1094 8280 58636;58637;58638;58639;58640;58641;58642 37313;37314;37315;37316;37317;37318;37319 37319 7 VEVISPNEYMGDIIGDLNSR Deamidation (NQ) 2221.0573 0.057263467 1094 Karp_00243 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 73.874 73.903 2 3.9542E-11 34224 20181213_JW_Orientia_Karp_1_1 168.68 131.91 169450000 61400000 50434000 47818000 0 3084300 0 6719100 0 9674 1094 8280 58643;58644;58645;58646;58647 37320;37321;37322;37323 37320 447 4 VEVTEFEDIK Unmodified 1207.5972 0.59723423 162 B2RCX0;A0A024R895;Q5VXV3;Q01105-3;Q01105-4;Q01105-2;Q01105;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 0 By MS/MS By MS/MS 1 1 51.532 51.957 2 6.4688E-07 19883 20181213_JW_Orientia_Karp_1_3 190.02 125.31 30563000 0 0 27312000 0 0 0 3251600 0 9675 162 8281 58648;58649 37324;37325 37324 2 VEYTLGEESEAPGQR Unmodified 1663.7689 0.76894402 877 E7EUU4;Q04637-3;E7EX73;B4DSI9;E9PGM1;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637-6;Q04637-7;Q04637-5;Q04637-4;Q04637;Q04637-8;Q04637-9;Q96I65;H7C0V6 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 42.999 43.399 2 0.036192 14627 20181213_JW_Orientia_Karp_1_3 88.803 53.389 14007000 0 7634800 4816400 0 0 0 1556200 0 9676 877 8282 58650;58651;58652 37326 37326 1 VEYTPYEEGLHSVDVTYDGSPVPSSPFQVPVTEGCDPSR Unmodified 4295.9481 0.94811353 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 70.976 71.059 3 0.037072 31954 20181213_JW_Orientia_Karp_1_3 30.017 11.931 45332000 21060000 0 11422000 0 0 0 12850000 0 9677 1615 8283 58653;58654;58655 37327 37327 1 VFAVSHGR Unmodified 871.46644 0.46643525 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 2 2 1 2 2 1 2 21.791 22.152 2 0.022511 4944 20181213_JW_Orientia_Karp_1_1 86.833 45.531 69920000 8856000 24909000 12266000 3709300 2987200 3748400 6836600 6608200 9678 85 8284 58656;58657;58658;58659;58660;58661;58662;58663;58664;58665;58666;58667;58668 37328;37329 37328 2 VFDIYATVER Unmodified 1211.6186 0.61863837 1239 Karp_00906 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 57.468 57.898 2 0.00033977 22080 20181213_JW_Orientia_Karp_2_3 140.16 89.286 19768000 0 0 0 0 0 14480000 0 5288000 9679 1239 8285 58669;58670 37330;37331;37332 37330 3 VFDMLNR Oxidation (M) 909.43784 0.43783723 387 A8K7F6;P60842;J3KT12;A8K088;P60842-2;J3QLN6;J3QR64;J3KTB5;J3QL43;J3QS69;E7EQG2;Q59F68;Q14240;Q14240-2;J3QKZ9;B4E047;J3KS25;J3KSZ0;Q9NZE6;B4DJX6 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 38.601 38.901 2 0.035631 12206 20181213_JW_Orientia_Karp_1_3 81.784 20.985 40454000 20111000 13390000 4974100 0 0 0 1978400 0 9680 387 8286 58671;58672;58673;58674 37333;37334 37333 2 VFEPNEEALGVVLHK Unmodified 1679.8883 0.88827129 1480 M0QXU7;Q9UPE4;Q53G69;O43615 TIMM44;hTIM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 56.219 56.402 3 0.042695 22656 20181213_JW_Orientia_Karp_1_3 43.184 3.7591 39218000 12269000 5128700 21819000 0 0 0 0 0 9681 1480 8287 58675;58676;58677 37335 37335 1 VFFDLMR Unmodified 926.46841 0.46840908 1588;200 P11233;B4E364;A0A024RAG3;P11234;P11234-3;P11234-2 RALA;RALB Ras-related protein Ral-A;Ras-related protein Ral-B no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 2 1 64.652 64.768 2 0.018178 28641 20181213_JW_Orientia_Karp_1_1 105.39 62.324 22977000 12497000 2866600 7613600 0 0 0 0 0 9682 1588;200 8288 58678;58679;58680;58681 37336;37337;37338 37336 3 VFFDLMR Oxidation (M) 942.46332 0.4633237 1588;200 P11233;B4E364;A0A024RAG3;P11234;P11234-3;P11234-2 RALA;RALB Ras-related protein Ral-A;Ras-related protein Ral-B no no 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 55.992 56.263 2 0.023413 21101 20181213_JW_Orientia_Karp_2_3 91.906 43.146 60998000 15207000 0 6493300 0 10601000 14014000 14683000 0 9683 1588;200 8288 58682;58683;58684;58685;58686 37339;37340;37341 37340 153 3 VFGPGIEGK Unmodified 902.48617 0.48616764 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 39.826 40.119 2 0.019012 12786 20181213_JW_Orientia_Karp_1_3 84.743 49.125 498210000 110940000 209810000 84052000 20569000 8397900 2053000 62392000 0 9684 1520 8289 58687;58688;58689;58690;58691;58692;58693 37342;37343;37344 37343 3 VFIEIEDEQK Unmodified 1248.6238 0.62378333 1230 Karp_00897 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 50.571 50.937 2 7.682E-07 17274 20181213_JW_Orientia_Karp_3_1 203.29 131.59 168660000 34616000 44522000 0 27006000 11178000 22364000 25188000 3786700 9685 1230 8290 58694;58695;58696;58697;58698;58699;58700 37345;37346;37347 37346 3 VFIGNLNTALVK Unmodified 1287.7551 0.75507227 361 Q5QPM2;B4DSJ1;Q5QPM0;Q5QPM1;Q5QPL9;A8K4T9;Q53GL6;Q9UKM9-2;Q9UKM9 RALY RNA-binding protein Raly yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 59.081 59.348 2 0.00056329 25394 20181213_JW_Orientia_Karp_1_1 147.74 0 36681000 10568000 10358000 7736400 0 3603800 4201600 212730 0 9686 361 8291 58701;58702;58703;58704;58705;58706;58707 37348;37349;37350;37351;37352;37353 37348 6 VFIGNLNTLVVK Unmodified 1315.7864 0.7863724 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575;D3DPI2;B4DMJ1;B4DSU6;Q6PKD2;P07910-3;O60812;B7ZW38;B2RXH8;G3V4M8;Q569J8;G3V2H6;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 63.104 63.412 2 1.7143E-17 27092 20181213_JW_Orientia_Karp_1_3 224.75 171.63 141670000 0 18747000 48701000 3110000 29994000 30876000 330130 9910100 9687 400;452 8292 58708;58709;58710;58711;58712;58713;58714;58715 37354;37355;37356;37357;37358;37359;37360;37361;37362 37356 9 VFIGNLNTLVVK Deamidation (NQ) 1316.7704 0.77038799 452;400 B2R603;G3V2Q1;A8K9A4;P07910;G3V576;G3V555;G3V575;D3DPI2;B4DMJ1;B4DSU6;Q6PKD2;P07910-3;O60812;B7ZW38;B2RXH8;G3V4M8;Q569J8;G3V2H6;B2R5W2;G3V4C1;P07910-2;G3V4W0;B4DY08;B3KX96;P07910-4;G3V5X6;G3V3K6;G3V251 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 0 1 0 0 By MS/MS 1 64.484 64.582 2 0.00381 27865 20181213_JW_Orientia_Karp_1_3 128.27 57.351 0 0 0 0 0 0 0 0 0 9688 400;452 8292 58716 37363 37363 151 1 VFISVVVDDSTAA Unmodified 1321.6765 0.67654718 1155 Karp_00570 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 72.444 72.494 2 3.082E-07 32985 20181213_JW_Orientia_Karp_1_3 220.39 161.24 96933000 37391000 5795500 6712100 0 11649000 7990000 27396000 0 9689 1155 8293 58717;58718;58719;58720;58721;58722 37364;37365;37366;37367;37368;37369 37366 6 VFLENVIR Unmodified 988.57057 0.57056597 447 B2R4R0;P62805;Q0VAS5;Q6B823 HIST1H4H;HIST1H4A Histone H4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 12 12 2 2 2 2 5 62.589 62.804 2 0.0044934 20769 20181213_JW_Orientia_Karp_2_3 130.27 35.609 28389000000 16780000000 38794000 9879400000 4168000 656120000 1007800000 1979400 20894000 9690 447 8294 58723;58724;58725;58726;58727;58728;58729;58730;58731;58732;58733;58734;58735;58736;58737;58738;58739;58740;58741;58742;58743;58744;58745;58746;58747;58748;58749;58750;58751;58752;58753;58754;58755;58756;58757;58758;58759;58760;58761;58762;58763;58764;58765;58766;58767;58768;58769;58770;58771 37370;37371;37372;37373;37374;37375;37376;37377;37378;37379;37380;37381;37382;37383;37384;37385;37386;37387;37388;37389;37390;37391;37392;37393;37394;37395;37396;37397;37398;37399;37400;37401;37402;37403;37404 37399 35 VFLENVIR Deamidation (NQ) 989.55458 0.55458155 447 B2R4R0;P62805;Q0VAS5;Q6B823 HIST1H4H;HIST1H4A Histone H4 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 1 59.835 60.091 2 0.0091994 25305 20181213_JW_Orientia_Karp_1_2 122.18 35.664 498880000 320130000 68125000 88181000 2101000 7532700 8257300 4547000 0 9691 447 8294 58772;58773;58774;58775;58776;58777;58778;58779;58780;58781 37405;37406;37407;37408;37409;37410;37411;37412;37413 37407 174 9 VFLQYLPAIR Unmodified 1218.7125 0.71247918 166 B4DWV9;A0A024R8M0;Q14344-2;Q14344 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 0 0 0 0 By MS/MS 1 66.676 66.774 2 0.00648 29247 20181213_JW_Orientia_Karp_1_3 111.04 71.89 1538600 0 0 1538600 0 0 0 0 0 9692 166 8295 58782 37414 37414 1 VFNLYPR Unmodified 907.49159 0.49158736 1814 Q53ET2;Q59GB4;Q16555-2;Q16555;Q8NAN9 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 49.009 49.335 2 0.025139 18314 20181213_JW_Orientia_Karp_1_2 95.793 43.157 20759000 0 12436000 0 4652900 1611300 2058900 0 0 9693 1814 8296 58783;58784;58785;58786 37415;37416 37415 2 VFNPYTEFK Unmodified 1143.5601 0.56006086 12 A0A024QZ77;Q96C19 EFHD2 EF-hand domain-containing protein D2 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 51.681 52.027 2 0.026795 18812 20181213_JW_Orientia_Karp_2_3 72.879 35.72 121350000 24283000 20902000 18099000 23117000 11462000 16310000 6166900 1005900 9694 12 8297 58787;58788;58789;58790;58791;58792;58793;58794 37417;37418 37418 2 VFQFLNAK Unmodified 965.53345 0.53345218 774 C9JXB8;C9JNW5;V9HW01;P83731 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 52.127 52.469 2 0.0044606 20533 20181213_JW_Orientia_Karp_1_2 130.77 74.644 80537000 32681000 20445000 20853000 6519100 0 0 0 38840 9695 774 8298 58795;58796;58797;58798;58799;58800 37419;37420;37421;37422;37423 37420 5 VFQQVAQASK Unmodified 1104.5928 0.59275797 4 A0A024QYT5;P05121 SERPINE1 Plasminogen activator inhibitor 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 31.239 31.583 2 6.8836E-06 8635 20181213_JW_Orientia_Karp_1_3 167.12 66.877 106630000 21560000 27075000 17948000 0 0 3199100 13389000 23456000 9696 4 8299 58801;58802;58803;58804;58805;58806;58807;58808 37424;37425;37426;37427;37428;37429;37430 37426 7 VFQSLPHENKPLTLSNYQTNK Unmodified 2457.2652 0.26522283 1547 Q76LA1;P04080 CSTB Cystatin-B yes no 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 42.992 43.336 3 0.0032393 13922 20181213_JW_Orientia_Karp_3_1 126.29 92.924 74186000 6660200 19640000 11304000 4875100 0 11540000 17378000 2790200 9697 1547 8300 58809;58810;58811;58812;58813;58814;58815 37431 37431 1 VFSELFGSNYFK Unmodified 1436.6976 0.69761697 1180 Karp_00655 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 66.82 67.072 2 0.00085272 23512 20181213_JW_Orientia_Karp_3_1 138.25 90.541 31019000 0 0 12737000 0 7450000 9330200 517640 983860 9698 1180 8301 58816;58817;58818;58819;58820;58821;58822 37432;37433;37434;37435 37434 4 VFSIGPVFR Unmodified 1020.5757 0.57565135 829 D3DP78;P14868-2;P14868;Q53T60 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 61.213 61.468 2 0.011882 26742 20181213_JW_Orientia_Karp_1_1 90.37 56.197 8461800 7786700 0 0 0 0 0 0 675100 9699 829 8302 58823;58824;58825;58826 37436;37437;37438 37436 3 VFSNNDEGLINKK Acetyl (Protein N-term);Deamidation (NQ) 1519.7518 0.75183739 507 F8WC58;F8WBW7;F8WBS9;F8WB01;F8WCQ8;F8WE99;B4DFQ9;B3KM70;Q9UKC9-2;Q9UKC9 FBXL2 F-box/LRR-repeat protein 2 yes no 1 1 0 1 By MS/MS 1 46.532 46.532 2 0.028375 17033 20181213_JW_Orientia_Karp_1_1 60.064 8.223 439860000 439860000 0 0 0 0 0 0 0 9700 507 8303 58827 37439 37439 187 1 VFSNQVNMELNK Oxidation (M) 1437.6922 0.69221402 1443 Karp_02418 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.977 39.294 2 3.3765E-41 13002 20181213_JW_Orientia_Karp_1_1 270.61 177.01 394890000 83132000 109930000 94929000 42660000 21695000 0 42540000 0 9701 1443 8304 58828;58829;58830;58831;58832;58833 37440;37441;37442;37443;37444;37445 37440 1043 6 VFSNQVNMELNK Unmodified 1421.6973 0.6972994 1443 Karp_02418 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.073 46.263 2 5.0936E-23 16133 20181213_JW_Orientia_Karp_1_3 236.69 160.41 186990000 49174000 46385000 73607000 0 9567000 8259600 0 0 9702 1443 8304 58834;58835;58836;58837;58838;58839 37446;37447;37448;37449;37450;37451 37448 6 VFSNQVNMELNK Oxidation (M);Deamidation (NQ) 1438.6762 0.67622961 1443 Karp_02418 yes yes 0 1 1 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 42 42.359 2 0.0038734 13558 20181213_JW_Orientia_Karp_3_1 117.09 76.367 52046000 12668000 7681900 8491300 7623800 0 0 14033000 1548200 9703 1443 8304 58840;58841;58842;58843;58844;58845 37452 37452 963 1043 1 VFTSWTGGGAAASR Unmodified 1366.663 0.6629628 801 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 33 43 32 37 31 23 29 44 59.677 59.92 2;3 1.3343E-59 31972 20181213_JW_Orientia_Karp_1_1 285.32 232.19 828650000000 159350000000 161260000000 138640000000 127260000000 166210000000 3029200000 44453000000 28442000000 + 9704 801 8305 58846;58847;58848;58849;58850;58851;58852;58853;58854;58855;58856;58857;58858;58859;58860;58861;58862;58863;58864;58865;58866;58867;58868;58869;58870;58871;58872;58873;58874;58875;58876;58877;58878;58879;58880;58881;58882;58883;58884;58885;58886;58887;58888;58889;58890;58891;58892;58893;58894;58895;58896;58897;58898;58899;58900;58901;58902;58903;58904;58905;58906;58907;58908;58909;58910;58911;58912;58913;58914;58915;58916;58917;58918;58919;58920;58921;58922;58923;58924;58925;58926;58927;58928;58929;58930;58931;58932;58933;58934;58935;58936;58937;58938;58939;58940;58941;58942;58943;58944;58945;58946;58947;58948;58949;58950;58951;58952;58953;58954;58955;58956;58957;58958;58959;58960;58961;58962;58963;58964;58965;58966;58967;58968;58969;58970;58971;58972;58973;58974;58975;58976;58977;58978;58979;58980;58981;58982;58983;58984;58985;58986;58987;58988;58989;58990;58991;58992;58993;58994;58995;58996;58997;58998;58999;59000;59001;59002;59003;59004;59005;59006;59007;59008;59009;59010;59011;59012;59013;59014;59015;59016;59017;59018;59019;59020;59021;59022;59023;59024;59025;59026;59027;59028;59029;59030;59031;59032;59033;59034;59035;59036;59037;59038;59039;59040;59041;59042;59043;59044;59045;59046;59047;59048;59049;59050;59051;59052;59053;59054;59055;59056;59057;59058;59059;59060;59061;59062;59063;59064;59065;59066;59067;59068;59069;59070;59071;59072;59073;59074;59075;59076;59077;59078;59079;59080;59081;59082;59083;59084;59085;59086;59087;59088;59089;59090;59091;59092;59093;59094;59095;59096;59097;59098;59099;59100;59101;59102;59103;59104;59105;59106;59107;59108;59109;59110;59111;59112;59113;59114;59115;59116;59117 37453;37454;37455;37456;37457;37458;37459;37460;37461;37462;37463;37464;37465;37466;37467;37468;37469;37470;37471;37472;37473;37474;37475;37476;37477;37478;37479;37480;37481;37482;37483;37484;37485;37486;37487;37488;37489;37490;37491;37492;37493;37494;37495;37496;37497;37498;37499;37500;37501;37502;37503;37504;37505;37506;37507;37508;37509;37510;37511;37512;37513;37514;37515;37516;37517;37518;37519;37520;37521;37522;37523;37524;37525;37526;37527;37528;37529;37530;37531;37532;37533;37534;37535;37536;37537;37538;37539;37540;37541;37542;37543;37544;37545;37546;37547;37548;37549;37550;37551;37552;37553;37554;37555;37556;37557;37558;37559;37560;37561;37562;37563;37564;37565;37566;37567;37568;37569;37570;37571;37572;37573;37574;37575;37576;37577;37578;37579;37580;37581;37582;37583;37584;37585;37586;37587;37588;37589;37590;37591;37592;37593;37594;37595;37596;37597;37598;37599;37600;37601;37602;37603;37604;37605;37606;37607;37608;37609;37610;37611;37612;37613;37614;37615;37616;37617;37618;37619;37620;37621;37622;37623;37624;37625;37626;37627;37628;37629;37630;37631;37632;37633;37634;37635;37636;37637;37638;37639;37640;37641;37642;37643;37644;37645;37646;37647;37648;37649;37650;37651;37652;37653;37654;37655;37656;37657;37658;37659;37660;37661;37662;37663;37664;37665;37666;37667;37668;37669;37670;37671;37672;37673;37674;37675;37676;37677;37678;37679;37680;37681;37682;37683;37684;37685;37686;37687;37688;37689;37690;37691;37692;37693;37694;37695;37696;37697;37698;37699;37700;37701;37702;37703;37704;37705;37706;37707;37708;37709;37710;37711;37712;37713;37714;37715;37716;37717;37718;37719;37720;37721;37722;37723;37724;37725;37726;37727;37728;37729;37730;37731;37732;37733;37734;37735;37736;37737;37738;37739 37470 271 VFTTQELVQAFTHAPATLEADR Unmodified 2444.2336 0.23358835 955 H0YJ63;G3V438;H0YJG7;O95433-2;O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 71.855 71.954 3 0.0047557 32619 20181213_JW_Orientia_Karp_1_3 77.391 44.827 40585000 15794000 9093000 6270000 0 0 0 9428400 0 9705 955 8306 59118;59119;59120;59121 37740;37741 37740 2 VFVGGLSPDTSEEQIK Unmodified 1704.857 0.85703074 258 B4DTA2;A0A024RDF6;O14979-3;O14979-2;O14979 HNRPDL;HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 53.806 54.137 2 0.00094683 21869 20181213_JW_Orientia_Karp_1_1 130.69 66.991 161020000 80205000 0 35135000 23190000 16507000 0 5986100 0 9706 258 8307 59122;59123;59124;59125;59126 37742;37743 37742 2 VFVNRSLAMEK Oxidation (M);Deamidation (NQ) 1309.67 0.67002202 379 S4R3A6;Q5JUV4;A8K6K2;P49902 NT5C2 Cytosolic purine 5'-nucleotidase yes no 0 1 1 1 By MS/MS 1 77.345 77.394 2 0.031396 36634 20181213_JW_Orientia_Karp_1_2 93.143 40.207 0 0 0 0 0 0 0 0 0 9707 379 8308 59127 37744 37744 146 1 VGAHAGEYGAEALER Unmodified 1528.727 0.72701962 825 U6A216;Q9BX83;E9M4D4;I1VZV6;D1MGQ2;P69905;U3PXP0;E1B2D1;Q4ZGM8;V9H1D9 HBA1;HBA2 Hemoglobin subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 34.095 34.611 3 0.0036777 9135 20181213_JW_Orientia_Karp_2_2 102.28 1.8231 48226000 0 0 0 19113000 26212000 0 2519600 380910 9708 825 8309 59128;59129;59130;59131 37745;37746 37746 2 VGAIPANALDDGQWSQGLISAAR Unmodified 2309.1764 0.17640782 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 2 1 1 1 1 2 1 69.156 69.321 2;3 0.005015 24816 20181213_JW_Orientia_Karp_3_1 103.66 84.056 59589000 13886000 15938000 10154000 396420 3402300 1353000 12812000 1647200 9709 2016 8310 59132;59133;59134;59135;59136;59137;59138;59139;59140;59141 37747;37748 37748 2 VGDAIPAVEVFEGEPGNK Unmodified 1826.905 0.90504357 1645 V9HW35;P30044-2;P30044;P30044-3 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 63.972 64.204 2 8.8332E-05 27612 20181213_JW_Orientia_Karp_1_3 141.59 102.95 172470000 37248000 31168000 37838000 9982900 30747000 18829000 320380 6334400 9710 1645 8311 59142;59143;59144;59145;59146;59147;59148;59149 37749;37750;37751;37752 37750 4 VGDEVEIVGLR Unmodified 1184.6401 0.6401021 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.612 54.969 2 8.8237E-13 20175 20181213_JW_Orientia_Karp_2_1 214.05 132.08 1758900000 281170000 626770000 406350000 125880000 117460000 197930000 145800 3150900 9711 1176;1244 8312 59150;59151;59152;59153;59154;59155;59156;59157 37753;37754;37755;37756;37757;37758;37759 37756 7 VGDQVIAIGSPFGLR Unmodified 1527.8409 0.84092717 1107 Karp_00285 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 3 2 1 2 68.173 68.364 2;3 3.0179E-37 30146 20181213_JW_Orientia_Karp_1_3 245.5 178.29 3568600000 475010000 500070000 723910000 262010000 406240000 217110000 592010000 392250000 9712 1107 8313 59158;59159;59160;59161;59162;59163;59164;59165;59166;59167;59168;59169;59170;59171;59172 37760;37761;37762;37763;37764;37765;37766;37767;37768;37769 37764 10 VGDTYERPK Unmodified 1063.5298 0.52982336 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 20.22 20.484 2 0.011535 3901 20181213_JW_Orientia_Karp_1_3 157.33 91.526 8537200 2758400 1636100 1728700 825960 310420 445330 832310 0 9713 85 8314 59173;59174;59175;59176;59177;59178;59179 37770 37770 1 VGEAGLLSVDCSEAGPGALGLEAVSDSGTK Unmodified 2845.3651 0.36513239 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 71.445 71.527 3 0.001123 32340 20181213_JW_Orientia_Karp_1_3 77.646 58.601 45871000 12438000 17585000 15848000 0 0 0 0 0 9714 1520 8315 59180;59181;59182 37771;37772 37772 2 VGEELNIIK Unmodified 1013.5757 0.57571092 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 49.227 49.344 2 0.0044752 18115 20181213_JW_Orientia_Karp_1_3 126.24 43.492 0 0 0 0 0 0 0 0 0 9715 1168 8316 59183;59184;59185 37773;37774;37775 37774 3 VGEFSGANK Unmodified 907.43995 0.43994572 1012 H9ZYJ2;P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 25.303 25.689 2 0.00078503 6485 20181213_JW_Orientia_Karp_1_1 145.16 86.374 48776000 9455600 9615700 0 0 8811700 6231300 7609200 7052100 9716 1012 8317 59186;59187;59188;59189;59190;59191 37776;37777;37778;37779;37780;37781 37776 6 VGEIITVIVSR Unmodified 1184.7129 0.71287311 1365 Karp_01875 yes yes 0 0 0 0 By MS/MS 1 62.301 62.499 2 0.034506 26514 20181213_JW_Orientia_Karp_1_3 88.596 49.842 0 0 0 0 0 0 0 0 0 9717 1365 8318 59192 37782 37782 1 VGELCAGK Unmodified 832.41129 0.41128813 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9 VCL;HEL114 Vinculin yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 25.676 26.096 2 0.032561 5104 20181213_JW_Orientia_Karp_3_2 81.191 12.276 1778600 0 0 460070 0 326580 0 0 991930 9718 19 8319 59193;59194;59195 37783 37783 1 VGENADSQIK Unmodified 1059.5197 0.51965261 1565 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 24.697 25.109 2 0.0007717 4752 20181213_JW_Orientia_Karp_3_2 128.91 47.715 15743000 5912100 6508700 0 0 663630 0 1686800 971930 9719 1565 8320 59196;59197;59198;59199;59200 37784;37785;37786;37787 37787 4 VGEPGQAGNPALVSAYGTGLEGGTTGIQSEFFINTTR Unmodified 3695.8067 0.80673309 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 72.808 72.891 3 4.1704E-05 33542 20181213_JW_Orientia_Karp_1_1 72.231 51.208 96098000 45116000 17823000 33159000 0 0 0 0 0 9720 1520 8321 59201;59202;59203 37788 37788 1 VGEQIFETLPPINLGR Unmodified 1781.9676 0.96758424 1365 Karp_01875 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 73.126 73.196 2 0.00027142 33444 20181213_JW_Orientia_Karp_1_3 184.96 131.75 212240000 47384000 33777000 52153000 16563000 11669000 5806700 30390000 14496000 9721 1365 8322 59204;59205;59206;59207;59208;59209;59210;59211 37789;37790;37791;37792;37793;37794;37795 37791 7 VGETIIDLENR Unmodified 1257.6565 0.65648044 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14;B3KSL7 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 53.884 54.21 2 1.9998E-05 21931 20181213_JW_Orientia_Karp_1_1 169.37 81.197 49698000 21240000 12722000 9186800 2165300 0 2704700 0 1679200 9722 1991 8323 59212;59213;59214;59215;59216;59217;59218 37796;37797;37798;37799 37796 4 VGEVTYVELLMDAEGK Oxidation (M) 1767.8601 0.86006721 1701 P52272-2;P52272;M0R019;B4DEG4;M0R0N3;M0R2T0 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 68.356 68.583 2 0.00024713 30513 20181213_JW_Orientia_Karp_1_2 141.58 88.548 16935000 6710800 4827200 0 2303400 0 0 0 3093400 9723 1701 8324 59219;59220;59221;59222;59223 37800;37801;37802;37803 37801 1322 4 VGEVTYVELLMDAEGK Unmodified 1751.8652 0.86515259 1701 P52272-2;P52272;M0R019;B4DEG4;M0R0N3;M0R2T0 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 72.975 73.044 2 0.00055775 29507 20181213_JW_Orientia_Karp_3_2 133.88 96.452 33369000 14946000 0 15699000 0 0 0 0 2723900 9724 1701 8324 59224;59225;59226;59227 37804;37805;37806;37807 37807 4 VGGATEVEQK Unmodified 1016.5138 0.51383895 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 21.933 22.36 2 2.7434E-06 4661 20181213_JW_Orientia_Karp_1_2 177.7 73.868 251290000 0 101120000 0 43338000 32396000 17153000 36757000 20521000 9725 1296 8325 59228;59229;59230;59231;59232;59233 37808;37809;37810;37811;37812;37813 37808 6 VGGHAAEYGAEALER Unmodified 1528.727 0.72701962 789 CON__P01966 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 2 1 34.56 34.886 2;3 0.0036314 10245 20181213_JW_Orientia_Karp_1_2 113.95 27.973 241240000 46425000 60626000 61237000 0 1802000 0 66795000 4358300 + 9726 789 8326 59234;59235;59236;59237;59238;59239;59240;59241;59242;59243 37814;37815;37816;37817;37818 37814 5 VGGLDCYLLSASDK Unmodified 1496.7181 0.71809442 1165 Karp_00617 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 59.618 59.828 2 3.2205E-05 24902 20181213_JW_Orientia_Karp_1_3 167.84 123.42 73917000 29311000 15780000 12156000 0 10133000 6538300 0 0 9727 1165 8327 59244;59245;59246;59247;59248 37819 37819 1 VGHLSINLDTR Unmodified 1223.6622 0.66223452 1321 Karp_01283 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 2 1 2 41.112 41.433 2;3 0.0044955 12619 20181213_JW_Orientia_Karp_2_2 91.123 29.344 249000000 5867400 152450000 43385000 11188000 14492000 1473400 20150000 0 9728 1321 8328 59249;59250;59251;59252;59253;59254;59255;59256;59257;59258;59259;59260 37820;37821;37822;37823;37824 37823 5 VGHYNPMLPK Oxidation (M) 1170.5856 0.5855641 1248 Karp_00920 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 2 2 2 3 4 1 30.996 31.347 2;3 8.3525E-05 8463 20181213_JW_Orientia_Karp_1_3 148.52 82.224 725040000 141220000 239710000 168610000 41400000 22584000 27305000 80221000 3995000 9729 1248 8329 59261;59262;59263;59264;59265;59266;59267;59268;59269;59270;59271;59272;59273;59274;59275;59276;59277;59278;59279;59280 37825;37826;37827;37828;37829;37830;37831 37828 807 7 VGHYNPMLPK Unmodified 1154.5906 0.59064948 1248 Karp_00920 yes yes 0 0 0 0 By MS/MS 1 33.292 33.902 3 0.0020532 8784 20181213_JW_Orientia_Karp_3_2 137.14 84.744 0 0 0 0 0 0 0 0 0 9730 1248 8329 59281 37832 37832 1 VGIDINANVPGK Unmodified 1195.6561 0.65608651 1417 Karp_02254 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.428 49.678 2 0.0048608 18507 20181213_JW_Orientia_Karp_1_2 109.16 43.999 109410000 16418000 28167000 20524000 20635000 10017000 13652000 0 0 9731 1417 8330 59282;59283;59284;59285;59286;59287 37833 37833 1 VGIDTPDIDIHGPEGK Unmodified 1661.8261 0.82606496 1782 Q09666;Q6ZQN2;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 50.902 51.247 3 0.01694 18375 20181213_JW_Orientia_Karp_2_3 109.99 74.254 255030000 54379000 51924000 52918000 45631000 20156000 19139000 10414000 466890 9732 1782 8331 59288;59289;59290;59291;59292;59293;59294;59295 37834;37835;37836;37837;37838 37837 5 VGINIIK Deamidation (NQ) 756.47454 0.47454032 1296 Karp_01187 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 49.086 49.347 2 0.0409 18728 20181213_JW_Orientia_Karp_1_1 99.384 6.6913 39661000 12398000 13854000 0 10537000 1240700 1631700 0 0 9733 1296 8332 59296;59297;59298;59299;59300 37839 37839 1 VGINIIK Unmodified 755.49052 0.49052473 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 45.275 45.504 2 0.0078881 15690 20181213_JW_Orientia_Karp_1_3 153.67 52.343 9706600000 4294000000 4418600000 969860000 15747000 8403000 0 0 0 9734 1296 8332 59301;59302;59303;59304;59305;59306;59307;59308;59309;59310;59311;59312 37840;37841;37842;37843;37844;37845;37846;37847 37841 8 VGINIIKK Unmodified 883.58549 0.58548775 1296 Karp_01187 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 34.177 34.51 2 0.018914 8963 20181213_JW_Orientia_Karp_2_2 148.21 55.513 168480000 59524000 45641000 29849000 11000000 11445000 0 11016000 0 9735 1296 8333 59313;59314;59315;59316;59317;59318 37848;37849 37848 2 VGINYQPPTVVPGGDLAK Unmodified 1823.9781 0.97814893 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;B4DN58;Q71U36-2;Q71U36;Q53GA7;Q1ZYQ1;F5H5D3;Q9BQE3;Q13748;B4DQK4;B7Z1K5;Q9UQM3;Q13748-2;Q6PEY2;Q8N532;C9J2C0;Q9NY65-2;Q9NY65;Q7Z3M3;V9GZ17 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA1C;TUBA3C;TUBA3E;TUBA8;DKFZp686L04275 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 1 59.77 60.056 2 1.8376E-07 25359 20181213_JW_Orientia_Karp_1_2 163.62 111.69 644720000 167510000 138160000 228800000 19850000 42638000 29264000 18494000 0 9736 512;1887 8334 59319;59320;59321;59322;59323;59324;59325;59326;59327;59328 37850;37851;37852;37853;37854;37855;37856;37857;37858 37851 9 VGLQEYTSYYESSSYPNQR Unmodified 2270.0128 0.012756116 1458 Karp_02603 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 54.188 54.455 2 2.0961E-84 19931 20181213_JW_Orientia_Karp_2_2 296.25 263.32 99706000 24147000 32642000 24321000 5156500 7715300 5724000 0 0 9737 1458 8335 59329;59330;59331;59332;59333;59334 37859;37860;37861;37862;37863;37864;37865 37864 7 VGLQEYTSYYESSSYPNQR Deamidation (NQ) 2270.9968 0.9967717 1458 Karp_02603 yes yes 0 1 0 0 By matching By MS/MS By matching 1 1 1 56.749 56.932 2 6.6271E-07 23378 20181213_JW_Orientia_Karp_1_2 158.65 126.09 11204000 4342500 3893600 2968200 0 0 0 0 0 9738 1458 8335 59335;59336;59337 37866 37866 989 1 VGLQVVAVK Unmodified 911.5804 0.58040237 81 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;B7Z532 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 46.322 46.572 2 0.00077777 16337 20181213_JW_Orientia_Karp_1_3 147.34 49.734 71857000 16689000 26382000 23882000 4904400 0 0 0 0 9739 81 8336 59338;59339;59340;59341 37867;37868;37869 37868 3 VGNIIDTMITDAFLK Unmodified 1649.8698 0.86984403 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3-2 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 75.601 75.641 2 0.022134 30656 20181213_JW_Orientia_Karp_3_2 83.314 33.683 19849000 8725900 4477800 4868200 933360 0 0 0 844100 9740 2015 8337 59342;59343;59344;59345;59346 37870;37871 37871 2 VGNTVANVLLEK Unmodified 1255.7136 0.71360139 1353 Karp_01624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.042 51.387 2 2.3141E-11 20107 20181213_JW_Orientia_Karp_1_1 224.66 104.2 97136000 20196000 12800000 22948000 13004000 10040000 12038000 5436500 673990 9741 1353 8338 59347;59348;59349;59350;59351;59352;59353;59354 37872;37873;37874;37875;37876;37877;37878;37879 37872 8 VGPAQIIIPNGPR Deamidation (NQ) 1331.7561 0.75613491 1315 Karp_01271 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 2 57.014 57.345 2 6.7011E-07 23721 20181213_JW_Orientia_Karp_1_2 182.39 155.88 185560000 34019000 58079000 43712000 9064600 15934000 16686000 286540 7779600 9742 1315 8339 59355;59356;59357;59358;59359;59360;59361;59362;59363;59364;59365;59366;59367;59368;59369 37880;37881;37882;37883;37884;37885;37886 37882 746 6 VGPNLYDVVNR Unmodified 1244.6513 0.65133548 1103 Karp_00280 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.673 52.975 2 8.8697E-05 21146 20181213_JW_Orientia_Karp_1_1 161.51 104.96 219450000 37972000 74308000 40638000 25456000 20778000 18830000 0 1466800 9743 1103 8340 59370;59371;59372;59373;59374;59375;59376;59377 37887;37888;37889;37890;37891;37892 37887 6 VGQASAYFLDPVQVEAYNSR Unmodified 2213.0753 0.075296793 1456 Karp_02593 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 66.13 66.26 2;3 4.3424E-48 29121 20181213_JW_Orientia_Karp_1_2 247.02 188.85 164500000 73325000 20995000 33719000 0 18130000 9988500 8343900 0 9744 1456 8341 59378;59379;59380;59381;59382;59383;59384;59385;59386;59387 37893;37894;37895;37896;37897;37898;37899 37894 7 VGQASAYFLDPVQVEAYNSR Deamidation (NQ) 2214.0593 0.059312378 1456 Karp_02593 yes yes 0 1 0 0 By MS/MS By matching By matching By matching 1 1 1 1 68.861 69.063 2 8.3091E-05 31073 20181213_JW_Orientia_Karp_1_2 136.63 110.09 26823000 0 8460300 15720000 800260 0 0 0 1842300 9745 1456 8341 59388;59389;59390;59391 37900 37900 988 1 VGQAVDVVGQAGKPK Unmodified 1451.8096 0.80962704 599 B4DM22;Q59EG8;Q13200;Q13041;Q13200-2;Q13200-3 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 32.468 32.871 3 0.030788 9273 20181213_JW_Orientia_Karp_1_2 77.633 26.274 25871000 11143000 9074000 0 0 0 0 4410500 1242900 9746 599 8342 59392;59393;59394;59395 37901;37902 37902 2 VGQLLAER Unmodified 884.50797 0.50796571 1226 Karp_00893 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 36.279 36.553 2 0.0013158 11647 20181213_JW_Orientia_Karp_1_1 176.09 82.08 131170000 57337000 38725000 26547000 8558400 0 0 0 0 9747 1226 8343 59396;59397;59398;59399;59400 37903;37904;37905;37906;37907 37903 5 VGQYVDVR Unmodified 934.48723 0.48723027 1242 Karp_00909 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 34.431 34.721 2 0.024582 9094 20181213_JW_Orientia_Karp_2_2 85.67 39.244 34874000 15237000 11595000 4175400 0 1524500 0 2341800 0 9748 1242 8344 59401;59402;59403;59404;59405 37908;37909 37909 2 VGSAADIPINISETDLSLLTATVVPPSGR Unmodified 2892.5444 0.54441738 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;H0Y5F3;H7C2E7 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 76.369 76.363 3 2.7836E-05 35530 20181213_JW_Orientia_Karp_1_3 87.098 58.316 389850000 72409000 110960000 117260000 12527000 14056000 8024600 50153000 4465200 9749 1615 8345 59406;59407;59408;59409;59410;59411;59412;59413 37910;37911;37912;37913;37914;37915 37912 6 VGSLDNVGHLPAGGAVK Unmodified 1589.8526 0.85255449 879 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;A0A024R2V0;Q86Y04;P27816-4;H0Y2V1;H7C4C5;F8W9U4;B4DSQ1;Q8NDS5 MAP4;DKFZp547H1810 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 42.965 43.194 3 0.015861 13905 20181213_JW_Orientia_Karp_2_1 90.853 52.179 43021000 2250100 19078000 8573100 8834300 4286200 0 0 0 9750 879 8346 59414;59415;59416;59417;59418 37916 37916 1 VGTDLLEEEITK Unmodified 1345.6977 0.69767655 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;P29692-4;H0YE72;H0YE58 EEF1D Elongation factor 1-delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 56.432 56.843 2 2.0927E-16 21352 20181213_JW_Orientia_Karp_2_1 212.82 123.74 121780000 0 48995000 0 23749000 24999000 23941000 95738 0 9751 1641 8347 59419;59420;59421;59422;59423 37917;37918;37919;37920 37918 4 VGTDLLEEEITKFEEHVQSVDIAAFNKI Deamidation (NQ) 3174.5972 0.59724081 1641 P29692;D3DWK1;B2RAR6;E9PRY8;P29692-3;P29692-2;Q9BW34;E9PQZ1;P29692-4;H0YE72 EEF1D Elongation factor 1-delta yes no 0 1 0 2 By MS/MS 1 69.217 69.467 4 0.042374 24705 20181213_JW_Orientia_Karp_3_1 42.254 16.435 6648400 0 0 0 0 0 0 6648400 0 9752 1641 8348 59424 37921 37921 0 VGVEVPDVNIEGPEGK Unmodified 1636.8308 0.83081599 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.872 58.174 2 7.4868E-06 24151 20181213_JW_Orientia_Karp_1_2 167.22 130.11 186510000 35835000 36530000 42434000 18622000 21841000 20768000 0 10485000 9753 1782 8349 59425;59426;59427;59428;59429;59430;59431 37922;37923;37924;37925;37926;37927;37928;37929 37924 8 VGVVGGMITGVESAR Oxidation (M) 1446.7501 0.75006325 1371 Karp_02001 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 9 5 10 6 7 10 50.882 51.219 2 1.04E-08 17367 20181213_JW_Orientia_Karp_1_2 184.03 124.68 44347000000 10305000000 8951400000 9327900000 3658000000 2888300000 3534200000 78059000 5604100000 9754 1371 8350 59432;59433;59434;59435;59436;59437;59438;59439;59440;59441;59442;59443;59444;59445;59446;59447;59448;59449;59450;59451;59452;59453;59454;59455;59456;59457;59458;59459;59460;59461;59462;59463;59464;59465;59466;59467;59468;59469;59470;59471;59472;59473;59474;59475;59476;59477;59478;59479;59480;59481;59482;59483;59484;59485;59486;59487;59488;59489 37930;37931;37932;37933;37934;37935;37936;37937;37938;37939;37940;37941;37942;37943;37944;37945;37946;37947;37948;37949;37950;37951;37952;37953;37954;37955;37956;37957;37958;37959;37960;37961;37962;37963;37964;37965;37966;37967;37968;37969;37970;37971;37972;37973;37974;37975;37976;37977;37978 37937 957 49 VGVVGGMITGVESAR Unmodified 1430.7551 0.75514863 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 5 5 5 6 7 5 56.175 56.537 2 4.8024E-13 19863 20181213_JW_Orientia_Karp_2_1 199.12 120.86 29780000000 18952000000 146930000 109770000 3793800000 3754700000 2834000000 157060000 31510000 9755 1371 8350 59490;59491;59492;59493;59494;59495;59496;59497;59498;59499;59500;59501;59502;59503;59504;59505;59506;59507;59508;59509;59510;59511;59512;59513;59514;59515;59516;59517;59518;59519;59520;59521;59522;59523;59524;59525;59526;59527;59528;59529;59530;59531;59532;59533;59534 37979;37980;37981;37982;37983;37984;37985;37986;37987;37988;37989;37990;37991;37992;37993;37994;37995;37996;37997;37998;37999;38000;38001;38002;38003;38004;38005;38006;38007 37992 27 VGVVGGMITGVESARLDPADAEGK Oxidation (M) 2343.174 0.17402456 1371 Karp_02001 yes yes 0 0 1 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.29 52.635 3 0.017489 20840 20181213_JW_Orientia_Karp_1_1 70.897 51.217 220230000 68853000 69691000 61272000 4803100 6169200 3734600 4858900 846200 9756 1371 8351 59535;59536;59537;59538;59539;59540;59541;59542 38008;38009;38010 38008 957 3 VGVVGGMITGVESARLDPADAEGKK Unmodified 2455.2741 0.27407296 1371 Karp_02001 yes yes 0 0 0 2 By matching By MS/MS By matching By matching 1 1 1 1 52.596 52.896 3 0.038605 20783 20181213_JW_Orientia_Karp_1_2 65.149 37.43 53617000 14344000 24078000 14434000 0 0 0 760470 0 9757 1371 8352 59543;59544;59545;59546 38011 38011 1 VGWEQLLTTIAR Unmodified 1385.7667 0.76669959 1509;133 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144;A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;B4DFY0;B3KUX9;B7Z2W3;A1L0V1;H7C5W8;H0YJW3;H0YJ11;Q5ZEZ4 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.207 73.316 2 7.7428E-67 33573 20181213_JW_Orientia_Karp_1_3 305.74 211.33 27619000 0 0 0 0 0 0 0 27619000 9758 1509;133 8353 59547;59548;59549;59550;59551;59552 38012;38013;38014;38015;38016;38017 38013 6 VGYCTVTDGAYSQYR Unmodified 1738.7621 0.7620845 1129 Karp_00368 yes yes 0 0 0 0 By MS/MS By matching 1 1 45.071 45.652 2 0.0094076 15082 20181213_JW_Orientia_Karp_3_1 98.105 58.232 2324900 0 0 0 0 0 0 932030 1392900 9759 1129 8354 59553;59554 38018 38018 1 VHAPGLNLSGVGGK Unmodified 1304.7201 0.72008375 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS 1 1 41.269 41.269 3 0.025451 14038 20181213_JW_Orientia_Karp_1_1 70.622 24.969 58334000 58334000 0 0 0 0 0 0 0 9760 1782 8355 59555;59556 38019;38020 38019 2 VHEYNVLLETLSR Unmodified 1571.8308 0.83075641 393 B2R6S9;A8K8F6;P30533 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 0 0 0 0 By matching By MS/MS 1 1 55.187 55.438 3 0.0039434 20677 20181213_JW_Orientia_Karp_2_3 97.957 41.835 6652000 0 0 0 0 3609400 3042700 0 0 9761 393 8356 59557;59558 38021 38021 1 VHGPGIQSGTTNKPNK Unmodified 1633.8536 0.85361712 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 19.126 19.434 3 0.027908 3617 20181213_JW_Orientia_Karp_3_1 81.128 54.537 46760000 0 24785000 12136000 2080700 300020 2214200 5244700 0 9762 1615 8357 59559;59560;59561;59562;59563;59564 38022;38023 38023 2 VHIEIGPDGR Unmodified 1091.5724 0.57235688 888;151 A0A024R7T3;P52597;B4DKS8;B4DP51;H0YBG7;Q68DG4;H0YBD7;B4DP00;E9PCY7;G8JLB6;P31943;H0YB39;P55795;B4DFK9 HNRPF;HNRNPF;HNRNPH1;DKFZp686A15170;HNRNPH2 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 2 2 1 1 2 2 1 36.271 36.553 2;3 0.0023468 11118 20181213_JW_Orientia_Karp_1_2 113.62 79.369 87719000 26969000 32460000 20190000 842720 4303100 1606100 1347800 0 9763 151;888 8358 59565;59566;59567;59568;59569;59570;59571;59572;59573;59574;59575 38024;38025;38026 38025 3 VHIQSSQTVESSGLYTLQSILK Unmodified 2417.2802 0.28020419 79 B2R642;A0A024R3I5;P43121;A8K6A6;B3KXZ9 MCAM Cell surface glycoprotein MUC18 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 63.065 63.248 3 0.00018415 27387 20181213_JW_Orientia_Karp_1_2 112.32 81.353 83445000 32173000 23789000 27483000 0 0 0 0 0 9764 79 8359 59576;59577;59578 38027 38027 1 VHLTPEEK Unmodified 951.50255 0.50254598 424 D5FZW3;E9M263;Q9BXA2;Q14484;A9YUX2;B5ANL9;Q9UP81;F8W6P5;Q8IZI0;Q8IUL9;Q3LR79;Q0Z944;B3VL31;Q9BWV6;Q9GZL9;B3VL86;D9YZU5;C8C504;Q14473;P68871;Q9H1I6;J7LKS8;B3VL12;O95408;Q14477;E9PEW8;Q4TWB7;B3VL17;Q6J1Z7;Q670S4;Q4F786;D1MGQ0;B2M1S8;E9PFT6;A0N071;P02042;B3VL28;Q9Y6D8;Q86VF0;Q2XP30;K4EN30;Q7Z2K5;D1MGP8;Q9HAR8;Q7Z7B3;Q14485;C9JRG0;Q4JLR8;B2M1S6 HBB;HBD Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 22.674 22.94 2 0.0050428 5238 20181213_JW_Orientia_Karp_1_1 121.99 68.638 32253000 26840000 0 0 3865800 0 0 1547200 0 9765 424 8360 59579;59580;59581 38028 38028 1 VHLVGIDIFTGK Unmodified 1297.7394 0.73942221 1018 I3L397;I3L504;P63241;P63241-2;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 1 59.592 59.853 2;3 6.2789E-05 22969 20181213_JW_Orientia_Karp_2_1 164.66 130.58 268320000 33631000 35283000 13356000 8715800 104070000 73262000 0 0 9766 1018 8361 59582;59583;59584;59585;59586;59587;59588;59589;59590;59591;59592 38029;38030;38031;38032;38033;38034 38031 6 VHNDAQSFDYDHDAFLGAEEAK Unmodified 2478.0724 0.07239626 514 Q6IAW5;B3KQF5;O43852;O43852-3;B3KNG6;A0A024R755;O43852-2;O43852-4;O43852-5;O43852-9;O43852-10;O43852-6;O43852-13;O43852-14;O43852-11;O43852-12;O43852-7;O43852-8 CALU Calumenin yes no 0 0 0 0 By MS/MS 1 46.521 46.97 3 0.033518 15931 20181213_JW_Orientia_Karp_2_1 42.123 27.51 2632400 0 0 0 2632400 0 0 0 0 9767 514 8362 59593 38035 38035 1 VHNISLEELLK Unmodified 1293.7293 0.72925145 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 53.911 54.181 3 1.9757E-06 21549 20181213_JW_Orientia_Karp_1_2 177.44 95.668 57031000 17085000 15281000 4418600 2801400 0 17445000 0 0 9768 1366 8363 59594;59595;59596;59597;59598;59599;59600 38036;38037;38038;38039;38040;38041 38037 6 VHSPSGALEECYVTEIDQDK Unmodified 2276.0267 0.026691621 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 48.25 48.609 3 4.0777E-22 15680 20181213_JW_Orientia_Karp_3_2 200.71 159.37 342690000 108610000 108420000 85527000 13136000 9500100 0 146160 17351000 9769 1615 8364 59601;59602;59603;59604;59605;59606;59607 38042;38043;38044;38045;38046;38047 38047 6 VHSPSGAVEECHVSELEPDK Unmodified 2205.0008 0.0008112211 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 35.367 35.729 3 0.0037046 11132 20181213_JW_Orientia_Karp_1_1 102.89 78.866 124850000 26614000 46999000 30674000 0 0 0 12726000 7839900 9770 1520 8365 59608;59609;59610;59611;59612 38048;38049;38050 38048 3 VHVGDEDFVHLR Unmodified 1421.7052 0.70516197 1547 Q76LA1;P04080 CSTB Cystatin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 41.426 41.827 3 0.0018712 13865 20181213_JW_Orientia_Karp_1_2 108.35 12.931 256970000 0 105780000 0 51095000 24302000 0 75801000 0 9771 1547 8366 59613;59614;59615;59616 38051;38052;38053;38054 38051 4 VHVQPAVDTSGVK Unmodified 1335.7147 0.71466402 1797 Q14315-2;Q14315 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 31.885 32.085 2 0.020077 9379 20181213_JW_Orientia_Karp_1_1 86.189 55.115 9523300 2853600 2861400 3620300 0 187950 0 0 0 9772 1797 8367 59617;59618;59619;59620 38055 38055 1 VHVSEEGTEPEAMLQVLGPK Unmodified 2149.0725 0.072519601 716 B7Z2X4;B7Z992;P06396-2;B7Z9A0;B7Z6N2;P06396-4;P06396-3;P06396;B7Z4U6;Q5T0I0 GSN Gelsolin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 57.586 57.848 3 0.0074267 23935 20181213_JW_Orientia_Karp_1_2 74.732 48.32 52013000 0 23994000 18945000 0 5345900 3728400 0 0 9773 716 8368 59621;59622;59623;59624 38056;38057 38056 2 VIAAEGEMNASR Unmodified 1246.5976 0.59758535 160 B4E2V5;B4DZK8;A0A024R882;P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 34.285 34.384 2 0.00097288 10484 20181213_JW_Orientia_Karp_1_1 134.3 97.747 21210000 13406000 0 7804100 0 0 0 0 0 9774 160 8369 59625;59626;59627 38058;38059;38060 38058 3 VIAAEGEMNASR Oxidation (M) 1262.5925 0.59249998 160 B4E2V5;B4DZK8;A0A024R882;P27105;P27105-2 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 26.228 26.378 2 0.0038395 5378 20181213_JW_Orientia_Karp_2_2 110.08 74.169 57440000 1877800 0 51629000 0 3932700 0 0 0 9775 160 8369 59628;59629;59630;59631 38061;38062;38063 38062 133 3 VIACFDSLK Unmodified 1051.5372 0.53721693 776 C9JP00;Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56;H7C4T5;O95205;A0PJJ3;A2A3S3;Q5VZF2-3;Q5VZF2-2;Q5VZF2;B4E3F7 MBNL1;MBLL;MBNL2 Muscleblind-like protein 1;Muscleblind-like protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 48.975 49.313 2 0.0047147 17328 20181213_JW_Orientia_Karp_2_3 105.57 52.401 24563000 0 0 0 0 7952700 7880600 0 8729600 9776 776 8370 59632;59633;59634 38064;38065;38066;38067 38065 4 VIAEGGNLGISQR Unmodified 1312.7099 0.709913 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.22 42.54 2 3.498E-34 14696 20181213_JW_Orientia_Karp_1_1 244 167.83 871260000 280230000 178760000 192440000 32173000 33565000 23070000 111400000 19621000 9777 1449 8371 59635;59636;59637;59638;59639;59640;59641;59642 38068;38069;38070;38071;38072;38073;38074;38075;38076 38068 9 VIAPVDEVQISILSSK Unmodified 1696.9611 0.96110188 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.297 68.504 2 3.6968E-05 26799 20181213_JW_Orientia_Karp_3_2 153 119.46 246080000 56337000 28613000 49872000 23009000 19009000 11774000 28469000 29001000 9778 274 8372 59643;59644;59645;59646;59647;59648;59649;59650 38077;38078;38079;38080;38081;38082;38083;38084 38084 8 VICQGITGAQGTFHTEQALK Unmodified 2158.0841 0.08408734 1120 Karp_00318 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 44.387 44.707 3 0.0028838 14975 20181213_JW_Orientia_Karp_2_3 90.442 51.931 639010000 142460000 187510000 70284000 21170000 62239000 79982000 59515000 15843000 9779 1120 8373 59651;59652;59653;59654;59655;59656;59657;59658 38085;38086;38087;38088;38089;38090;38091;38092 38090 8 VIDAWSR Unmodified 845.43955 0.43955179 1169 Karp_00623 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 39.192 39.629 2 0.018677 12545 20181213_JW_Orientia_Karp_1_3 104.37 53.306 253910000 0 85612000 101620000 48604000 0 0 18081000 0 9780 1169 8374 59659;59660;59661;59662 38093;38094 38093 2 VIDDTNITR Unmodified 1045.5404 0.54038805 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 0 0 By MS/MS By matching 1 1 35.073 35.498 2 0.042145 10509 20181213_JW_Orientia_Karp_1_3 71.614 25.455 43037000 0 0 30055000 0 0 0 12981000 0 9781 208 8375 59663;59664 38095 38095 1 VIDEMSFEEALNELEK Oxidation (M) 1910.8819 0.88192486 1272 Karp_01080 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 1 72.584 72.638 2;3 1.056E-204 26739 20181213_JW_Orientia_Karp_3_1 387.99 310.61 685800000 132780000 76097000 93653000 36200000 88869000 66536000 136590000 55071000 9782 1272 8376 59665;59666;59667;59668;59669;59670;59671;59672;59673;59674;59675;59676;59677 38096;38097;38098;38099;38100;38101;38102;38103 38102 838 8 VIDEMSFEEALNELEK Unmodified 1894.887 0.88701024 1272 Karp_01080 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 2 1 73.578 73.607 2;3 9.3026E-135 33742 20181213_JW_Orientia_Karp_1_3 341.16 275.92 517830000 129880000 114170000 145870000 9618500 42748000 6382500 46624000 22538000 9783 1272 8376 59678;59679;59680;59681;59682;59683;59684;59685;59686;59687;59688;59689 38104;38105;38106;38107;38108;38109;38110;38111;38112 38106 9 VIDEMSFEEALNELEK Deamidation (NQ) 1895.871 0.87102583 1272 Karp_01080 yes yes 0 1 0 0 By MS/MS By matching 1 1 67.459 67.734 2 0.0025738 29795 20181213_JW_Orientia_Karp_1_3 122.66 71.05 11087000 0 0 6768600 0 0 0 4318600 0 9784 1272 8376 59690;59691 38113 38113 688 1 VIDFDIIYGLGISK Unmodified 1551.8548 0.8548459 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS 1 74.955 74.955 2 0.0022983 34911 20181213_JW_Orientia_Karp_1_1 138.89 104.2 0 0 0 0 0 0 0 0 0 9785 1245 8377 59692 38114 38114 1 VIDIFDTDGNGEVDFK Deamidation (NQ) 1783.8152 0.81522551 843 F6U1T9;D3YTA9;H7BYZ3;Q86YQ0;P63098 PPP3R1;HZGJ Calcineurin subunit B type 1 yes no 0 1 0 0 By MS/MS By matching By matching 1 1 1 72.64 72.722 2 0.040303 33361 20181213_JW_Orientia_Karp_1_1 74.769 44.437 21653000 13085000 0 5882000 2685300 0 0 0 0 9786 843 8378 59693;59694;59695 38115 38115 0 VIDLLSVK Unmodified 885.55352 0.55351892 1385 Karp_02124 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 55.9 56.262 2 0.042273 22659 20181213_JW_Orientia_Karp_1_3 75.738 31.343 26009000 0 2200400 6902200 0 0 11766000 5139600 0 9787 1385 8379 59696;59697;59698;59699 38116 38116 1 VIDLLTPYISGGK Unmodified 1374.7759 0.7758673 1341 Karp_01515 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 68.138 68.346 2 0.0056487 24159 20181213_JW_Orientia_Karp_3_1 129.16 96.741 35811000 8814800 4225000 6577600 1388000 3738000 2570000 6501900 1996200 9788 1341 8380 59700;59701;59702;59703;59704;59705;59706;59707 38117;38118 38118 2 VIDVHNPADLPEMQK Unmodified 1704.8505 0.85050558 1304 Karp_01242 yes yes 0 0 0 0 By MS/MS By matching 1 1 48.29 48.465 3 0.033393 18130 20181213_JW_Orientia_Karp_1_1 73.296 37.004 88524000 30511000 58013000 0 0 0 0 0 0 9789 1304 8381 59708;59709 38119;38120 38119 2 VIEGDVVSALNK Unmodified 1242.682 0.68196691 1680 P48059-3;P48059;P48059-4;P48059-2;P48059-5;B3KNZ3 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 49.842 50.144 2 2.4936E-07 19290 20181213_JW_Orientia_Karp_1_1 184.71 91.277 171220000 51666000 36092000 26226000 24002000 9207900 18575000 0 5454100 9790 1680 8382 59710;59711;59712;59713;59714;59715;59716 38121;38122;38123;38124;38125 38121 4 VIEHIMEDLDTNADK Oxidation (M) 1757.8142 0.81417965 446 B2R4M6;P06702 S100A9 Protein S100;Protein S100-A9 yes no 0 0 1 0 By MS/MS 1 39.588 40.24 2 0.03624 12486 20181213_JW_Orientia_Karp_3_1 69.345 46.227 9155100 0 0 0 0 0 0 9155100 0 9791 446 8383 59717 38126 38126 1 VIEHYASQYEQ Unmodified 1365.6201 0.62009493 1370 Karp_01999 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 35.556 35.872 2 0.00048529 9608 20181213_JW_Orientia_Karp_2_2 141.91 86.799 181260000 50419000 85403000 27554000 5537300 6080700 0 5316400 944820 9792 1370 8384 59718;59719;59720;59721;59722;59723;59724;59725;59726;59727 38127;38128;38129;38130;38131;38132 38131 6 VIELFEAR Unmodified 975.53893 0.53893149 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.707 55.023 2 0.004443 21804 20181213_JW_Orientia_Karp_1_3 131.03 58.893 836600000 237280000 116990000 281600000 29739000 55857000 114920000 0 218230 9793 1169 8385 59728;59729;59730;59731;59732;59733;59734 38133;38134;38135;38136;38137;38138;38139;38140 38136 8 VIENAEGVR Unmodified 985.51926 0.51925868 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 28.028 28.388 2 0.00074605 6720 20181213_JW_Orientia_Karp_3_1 150.27 63.332 356210000 77068000 0 164290000 0 37988000 15312000 36377000 25171000 9794 1074 8386 59735;59736;59737;59738;59739;59740;59741 38141;38142;38143;38144;38145;38146;38147;38148 38146 8 VIESMEQTSPNPSEIAQR Oxidation (M) 2030.9579 0.95788377 1266 Karp_01074 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 42.012 42.298 2;3 9.2402E-69 14053 20181213_JW_Orientia_Karp_1_2 284.91 181.47 149190000 33892000 18170000 35218000 12110000 12065000 0 37729000 0 9795 1266 8387 59742;59743;59744;59745;59746;59747;59748;59749;59750;59751;59752 38149;38150;38151;38152;38153 38150 832 5 VIESMEQTSPNPSEIAQR Deamidation (NQ) 2015.947 0.94698474 1266 Karp_01074 yes yes 0 1 0 0 By MS/MS 1 47.996 47.996 2 5.2328E-22 17833 20181213_JW_Orientia_Karp_1_1 224.43 130.03 0 0 0 0 0 0 0 0 0 9796 1266 8387 59753 38154 38154 1833 1 VIESMEQTSPNPSEIAQR Unmodified 2014.963 0.96296915 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 47.687 48.114 2 5.0362E-70 17225 20181213_JW_Orientia_Karp_1_3 286.74 189.58 41262000 0 11174000 20833000 3947000 0 0 0 5307600 9797 1266 8387 59754;59755;59756;59757 38155;38156;38157 38156 3 VIESTQDLGNDLAGVMALQR Unmodified 2129.0787 0.078667612 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 69.56 69.643 2 0.00012863 31368 20181213_JW_Orientia_Karp_1_2 154.65 88.385 10185000 1752300 3387400 5045500 0 0 0 0 0 9798 506 8388 59758;59759;59760 38158 38158 1 VIFIINDAEEK Unmodified 1289.6867 0.68671794 1279 Karp_01113 yes yes 0 0 0 0 By MS/MS 1 56.952 57.401 2 0.0069564 21659 20181213_JW_Orientia_Karp_2_1 123.11 76.65 0 0 0 0 0 0 0 0 0 9799 1279 8389 59761 38159 38159 1 VIFLNEAK Unmodified 932.53312 0.53311783 1443 Karp_02418 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.75 47.043 2 0.0053341 17259 20181213_JW_Orientia_Karp_1_1 118.74 63.967 255250000 87562000 95351000 31227000 8959900 15004000 16992000 149200 0 9800 1443 8390 59762;59763;59764;59765;59766;59767;59768;59769 38160;38161;38162;38163;38164;38165 38160 6 VIGISDYEVNR Unmodified 1263.6459 0.64591575 1326 Karp_01350 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 49.055 49.4 2 2.5595E-05 16266 20181213_JW_Orientia_Karp_3_2 174.86 138.48 343760000 69964000 83743000 80175000 47041000 18170000 28169000 183640 16312000 9801 1326 8391 59770;59771;59772;59773;59774;59775;59776;59777 38166;38167;38168 38168 3 VIGLNPNTNK Unmodified 1068.5928 0.59275797 1109 Karp_00291 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.386 36.669 2 0.0019287 10705 20181213_JW_Orientia_Karp_2_3 115.71 61.103 136950000 37759000 48690000 28316000 0 2987600 4080300 15115000 0 9802 1109 8392 59778;59779;59780;59781;59782;59783 38169;38170;38171 38170 3 VIGNQSLVNELAFTAR Unmodified 1730.9315 0.93153309 1787 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 63.395 63.494 2 0.0016687 27824 20181213_JW_Orientia_Karp_1_1 119.21 82.796 13080000 5236000 0 7844000 0 0 0 0 0 9803 1787 8393 59784;59785 38172;38173;38174 38172 3 VIGSGCNLDSAR Unmodified 1247.5928 0.59283433 587;1563 B4DJI1;V9HWB9;P00338-4;P00338;P00338-3;P00338-5;P00338-2;F5H5G7;F5H155;Q96L19;G3XAP5;F5H245;G9BCY8;G9BCY7;D6NKH9;Q6ZMR3;P07864;Q5U077;P07195;A8MW50 HEL-S-133P;LDHA;LDHC;LDHAL6A;LDHB L-lactate dehydrogenase;L-lactate dehydrogenase A chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase B chain no no 0 0 0 0 By MS/MS By matching By matching 1 1 1 33.451 33.955 2 0.010631 9844 20181213_JW_Orientia_Karp_1_2 96.756 59.28 6720300 0 3999100 0 1964900 0 0 0 756270 9804 587;1563 8394 59786;59787;59788 38175 38175 1 VIGTLLGTVDK Unmodified 1114.6598 0.65977491 526 B4DMT5;B3KSH1;O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 53.654 53.837 2 0.00042169 21359 20181213_JW_Orientia_Karp_1_2 144.65 9.2214 22696000 7747800 4937000 10011000 0 0 0 0 0 9805 526 8395 59789;59790;59791 38176;38177 38176 2 VIHDNFGIVEGLMTTVHAITATQK Oxidation (M) 2610.3476 0.34757225 1551 V9HVZ4;Q2TSD0;P04406-2;P04406;Q0QET7;E7EUT5;A4UCT1 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 64.7 64.88 3 0.00074054 28384 20181213_JW_Orientia_Karp_1_2 101.33 80.674 27988000 3321800 12250000 0 2855400 5598200 3962500 0 0 9806 1551 8396 59792;59793;59794;59795;59796 38178;38179 38178 1161 2 VIHVVTSEMDNYEPGVYTEK Oxidation (M) 2325.0835 0.083478218 684 G3XAM7;B4E2G8;P35221;P35221-2;B4DKT9;B4DU00;P35221-3;B3KSR8 CTNNA1 Catenin alpha-1 yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 45.509 45.81 3 0.02975 15177 20181213_JW_Orientia_Karp_3_1 63.998 26.619 37393000 25899000 0 0 0 0 5138700 6355000 0 9807 684 8397 59797;59798;59799 38180 38180 1 VIIIDEFTGR Unmodified 1161.6394 0.63937381 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 62.707 63.061 2 0.021809 23624 20181213_JW_Orientia_Karp_3_2 93.598 45.94 0 0 0 0 0 0 0 0 0 9808 1374 8398 59800;59801 38181;38182 38182 2 VIINGAGAAGIACAELLK Deamidation (NQ) 1740.9444 0.94440596 1336 Karp_01409 yes yes 0 1 0 0 By MS/MS 1 66.401 66.401 2 0.0034339 29567 20181213_JW_Orientia_Karp_1_1 123.68 82.568 0 0 0 0 0 0 0 0 0 9809 1336 8399 59802 38183 38183 776 1 VILDLTPNYR Unmodified 1202.6659 0.66592292 687 B4E2Z3;F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;A0A024R599 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 2 1 56.756 56.881 2 0.0036393 23727 20181213_JW_Orientia_Karp_1_1 107.15 45.192 11265000 8594700 0 0 0 0 2670100 0 0 9810 687 8400 59803;59804;59805;59806 38184;38185;38186 38184 3 VILESMK Oxidation (M) 834.45209 0.45209032 1443 Karp_02418 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 29.056 29.414 2 0.023413 8104 20181213_JW_Orientia_Karp_1_1 91.906 10.61 142660000 33832000 41571000 17861000 8288200 14433000 8884400 12925000 4864500 9811 1443 8401 59807;59808;59809;59810;59811;59812;59813;59814 38187;38188;38189 38187 1044 3 VINDPFVGSLTFIR Unmodified 1576.8613 0.86132826 1094 Karp_00243 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 72.616 72.674 2 0.0042917 33105 20181213_JW_Orientia_Karp_1_3 118.24 73.487 132990000 41580000 35219000 26709000 0 5768900 6056100 14382000 3274400 9812 1094 8402 59815;59816;59817;59818;59819;59820;59821 38190;38191 38191 2 VINELQHK Unmodified 979.54508 0.5450795 1423 Karp_02309 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 22.37 22.636 2 0.014957 4801 20181213_JW_Orientia_Karp_1_2 95.815 21.4 7940800 1482500 2398800 2141100 647400 470430 0 800570 0 9813 1423 8403 59822;59823;59824;59825;59826;59827 38192;38193 38193 2 VINEPTAAALAYGLDK Unmodified 1644.8723 0.87228688 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;Q2F839 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 59.065 59.385 2 0.0032699 24617 20181213_JW_Orientia_Karp_1_3 110.22 67.878 69563000 17788000 19531000 13230000 5290700 5065600 5394700 144910 3117300 9814 721 8404 59828;59829;59830;59831;59832;59833;59834;59835 38194;38195;38196 38195 3 VINFIQQFSITLPLAIQK Unmodified 2072.2034 0.20339784 1248 Karp_00920 yes yes 0 0 0 0 By MS/MS 1 76.436 76.385 2 0.036398 28807 20181213_JW_Orientia_Karp_3_1 84.734 47.12 0 0 0 0 0 0 0 0 0 9815 1248 8405 59836 38197 38197 1 VINHFTDQNLIIR Unmodified 1581.8627 0.86272524 1343 Karp_01518 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 48.148 48.408 3 0.042208 16777 20181213_JW_Orientia_Karp_2_3 67.252 28.247 27993000 4288300 11331000 6371400 0 1380300 2610100 0 2011700 9816 1343 8406 59837;59838;59839;59840;59841;59842 38198 38198 1 VINHILENEVQIIEEPCTSDEIEGFADEISK Unmodified 3569.7083 0.70832418 1252 Karp_00931 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 72.225 72.342 3 0.00079334 26557 20181213_JW_Orientia_Karp_3_1 66.413 39.754 68017000 0 30298000 0 0 15005000 0 22714000 0 9817 1252 8407 59843;59844;59845 38199;38200;38201 38200 3 VINHILENEVQIIEEPCTSDEIEGFADEISK Deamidation (NQ) 3570.6923 0.69233976 1252 Karp_00931 yes yes 0 1 0 0 By MS/MS 2 72.222 72.381 3 0.01808 29214 20181213_JW_Orientia_Karp_3_2 76.028 36.346 0 0 0 0 0 0 0 0 0 9818 1252 8407 59846;59847 38202;38203 38202 662;663;1824 2 VINIINNK Deamidation (NQ) 927.53893 0.53893149 1330 Karp_01368 yes yes 0 1 0 0 By MS/MS By matching By matching By MS/MS 2 1 1 2 43.372 43.673 2 0.03306 15614 20181213_JW_Orientia_Karp_1_1 90.777 14.003 39209000 22450000 8087000 0 0 2576600 0 6096000 0 9819 1330 8408 59848;59849;59850;59851;59852;59853 38204;38205 38204 2 VINIINNK Unmodified 926.55492 0.5549159 1330 Karp_01368 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 39.907 40.248 2 0.0063624 13046 20181213_JW_Orientia_Karp_1_2 115.46 17.041 74203000 0 21710000 19461000 7810600 5516300 1416500 18288000 0 9820 1330 8408 59854;59855;59856;59857;59858;59859 38206;38207;38208;38209;38210 38206 5 VINQILTEMDGMSTK Oxidation (M) 1694.8219 0.82190756 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 2 1 50.038 50.213 2 0.0034106 19328 20181213_JW_Orientia_Karp_1_1 111.72 59.55 19904000 8773400 11131000 0 0 0 0 0 0 9821 1708 8409 59860;59861;59862;59863 38211;38212;38213 38211 1332;1333 3 VINQILTEMDGMSTK 2 Oxidation (M) 1710.8168 0.81682219 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 2 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.811 45.392 2 2.5337E-06 14308 20181213_JW_Orientia_Karp_3_2 171.73 125.73 7851700 0 0 0 0 0 0 2101400 5750300 9822 1708 8409 59864;59865;59866 38214;38215;38216 38216 1332;1333 3 VINQPLPK Unmodified 907.5491 0.54910224 1396 Karp_02152 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.708 34.081 2 0.0079662 10381 20181213_JW_Orientia_Karp_1_1 110.34 58.038 788810000 120910000 109320000 461050000 31284000 30327000 0 18251000 17661000 9823 1396 8410 59867;59868;59869;59870;59871;59872;59873 38217;38218;38219;38220;38221;38222;38223 38217 7 VIPFLGSESESFMEK Unmodified 1698.8175 0.81747411 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 67.98 68.187 2 5.1893E-06 24065 20181213_JW_Orientia_Karp_3_1 182.41 135.71 209760000 41236000 37842000 62732000 10253000 16368000 9844700 20564000 10924000 9824 1428 8411 59874;59875;59876;59877;59878;59879;59880;59881 38224;38225;38226;38227;38228;38229;38230;38231 38231 8 VIPFLGSESESFMEK Oxidation (M) 1714.8124 0.81238874 1428 Karp_02381 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.015 63.31 2 6.1539E-05 24472 20181213_JW_Orientia_Karp_2_2 153.38 95.495 266430000 79476000 49434000 56595000 7286400 36560000 23766000 343460 12967000 9825 1428 8411 59882;59883;59884;59885;59886;59887;59888;59889 38232;38233;38234;38235;38236;38237 38235 1035 6 VIQAQTAFSANPANPAILSEASAPIPHDGNLYPR Deamidation (NQ) 3530.7794 0.77939613 154 B4DHN5;E9PBU7;B4DQ93;A0A024R7Z5;G5EA09;O00560-2;O00560 SDCBP Syntenin-1 yes no 0 1 0 0 By MS/MS 1 66.401 66.499 3 6.4604E-05 29048 20181213_JW_Orientia_Karp_1_3 82.503 67.071 0 0 0 0 0 0 0 0 0 9826 154 8412 59890 38238 38238 63 1 VIQNLANR 3 Deamidation (NQ) 929.48181 0.48181054 1476 M0QX12;Q9H7J2;Q86YV0-2;Q86YV0 RASAL3;FLJ00087 RAS protein activator like-3 yes no 0 3 0 0 By MS/MS 1 39.539 40.049 2 0.019342 11962 20181213_JW_Orientia_Karp_3_2 95.793 12.416 0 0 0 0 0 0 0 0 0 9827 1476 8413 59891 38239 38239 1001;1002;1897 1 VIQYLAYVASSHK Unmodified 1477.7929 0.79291434 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1;Q5BKV1;Q9UMJ0 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 2 48.924 49.254 2;3 0.00062155 16686 20181213_JW_Orientia_Karp_3_1 144.1 110.88 476740000 127600000 175850000 79291000 40070000 11173000 14284000 549300 27922000 9828 47 8414 59892;59893;59894;59895;59896;59897;59898;59899;59900;59901;59902;59903;59904;59905 38240;38241;38242;38243;38244;38245;38246;38247;38248;38249 38247 10 VISGVLQLGNIVFK Unmodified 1485.8919 0.89190011 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 72.694 72.763 2 2.5652E-35 33162 20181213_JW_Orientia_Karp_1_3 254.19 217.61 808710000 188960000 111640000 205360000 3760000 56637000 21361000 156130000 64863000 9829 47 8415 59906;59907;59908;59909;59910;59911;59912;59913 38250;38251;38252;38253;38254;38255;38256 38251 7 VISGVLQLGNIVFKK Unmodified 1613.9869 0.98686312 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS 1 63.78 64.029 3 0.030681 27846 20181213_JW_Orientia_Karp_1_2 85.536 65.958 0 0 0 0 0 0 0 0 0 9830 47 8416 59914 38257 38257 1 VISLTAR Unmodified 758.46504 0.46503826 1252 Karp_00931 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 36.762 37.028 2 0.01188 10913 20181213_JW_Orientia_Karp_2_3 138.24 49.599 112260000 69157000 21467000 13567000 3276600 2462700 2327000 0 0 9831 1252 8417 59915;59916;59917;59918;59919;59920;59921 38258;38259;38260;38261;38262 38261 5 VISSGSVASYVTSPQGFQFR Unmodified 2116.0589 0.058918447 195 A0A024RAB6;P98160;Q5SZJ2 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS 1 1 63.141 63.24 2 3.0807E-07 27002 20181213_JW_Orientia_Karp_1_3 150.05 103.98 13551000 8252400 0 5299000 0 0 0 0 0 9832 195 8418 59922;59923 38263 38263 1 VITELEK Unmodified 830.47493 0.47493425 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 33.912 34.285 2 0.032154 8851 20181213_JW_Orientia_Karp_2_2 87.754 13.78 147950000 66653000 26979000 23000000 5800600 13668000 0 10744000 1106800 9833 1251 8419 59924;59925;59926;59927;59928;59929;59930 38264;38265;38266;38267 38267 4 VITEYLNAQESAK Unmodified 1464.746 0.74602373 451 B2R5U1;B4E299;B3KU67;Q59FF0;Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 45.994 46.258 2 0.023819 16200 20181213_JW_Orientia_Karp_1_3 83.617 45.623 36297000 11958000 11851000 10954000 0 0 0 0 1534300 9834 451 8420 59931;59932;59933;59934 38268;38269;38270 38269 2 VITIIDETVGVDSYRPTTESTVR Unmodified 2550.3177 0.31771191 1418 Karp_02255 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 58.843 59.136 3 0.00075072 22534 20181213_JW_Orientia_Karp_2_1 105.2 54.81 75167000 18854000 14128000 17607000 6145800 10843000 7396100 193620 0 9835 1418 8421 59935;59936;59937;59938;59939;59940;59941;59942 38271;38272;38273;38274;38275;38276 38273 6 VITIMQNPR Unmodified 1070.5906 0.59064948 1730 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 42.996 43.316 2 0.00024753 15166 20181213_JW_Orientia_Karp_1_1 167.23 87.778 122980000 34654000 43839000 27159000 2055500 1373900 591440 12639000 663350 9836 1730 8422 59943;59944;59945;59946;59947;59948;59949;59950 38277;38278 38277 2 VITIMQNPR Oxidation (M) 1086.5856 0.5855641 1730 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.596 34.918 2 0.00066318 9936 20181213_JW_Orientia_Karp_3_1 141.52 94.439 100230000 25978000 23321000 28454000 3450000 3999100 2530800 12498000 0 9837 1730 8422 59951;59952;59953;59954;59955;59956;59957 38279;38280;38281;38282;38283;38284 38284 1359 6 VITNQYNNPAGLYSSENISNFNNALESK Deamidation (NQ) 3101.4578 0.45778722 1487 V9HW92;O00151 HEL-S-112;PDLIM1 PDZ and LIM domain protein 1 yes no 0 1 0 0 By MS/MS By matching 1 1 63.675 63.841 3 0.00047838 27248 20181213_JW_Orientia_Karp_1_3 87.881 63.964 7968500 0 0 6384400 0 0 1584000 0 0 9838 1487 8423 59958;59959 38285;38286 38286 1004 2 VITNQYNNPAGLYSSENISNFNNALESK Unmodified 3100.4738 0.47377163 1487 V9HW92;O00151 HEL-S-112;PDLIM1 PDZ and LIM domain protein 1 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 63.362 63.582 3 0.0036661 24955 20181213_JW_Orientia_Karp_2_3 57.691 39.194 12234000 6037400 0 0 0 0 4503500 0 1692900 9839 1487 8423 59960;59961;59962 38287;38288 38288 2 VITPSIYSQMVWEQK Oxidation (M) 1823.9128 0.91277148 1348 Karp_01524 yes yes 0 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 57.899 58.209 2 0.021506 24217 20181213_JW_Orientia_Karp_1_2 80.371 33.778 31840000 11381000 8286700 5418900 2373900 3023600 0 0 1356300 9840 1348 8424 59963;59964;59965;59966;59967;59968 38289 38289 920 1 VIVEAQAMEK Oxidation (M) 1132.5798 0.57981002 1342 Karp_01516 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 30.601 30.951 2 0.00029962 8416 20181213_JW_Orientia_Karp_1_2 139.43 84.657 28890000 9272300 5334400 8726200 1951500 1180600 0 2425300 0 9841 1342 8425 59969;59970;59971;59972;59973;59974 38290;38291;38292;38293;38294;38295 38291 908 6 VIVESASNIPK Unmodified 1155.6499 0.6499385 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-5;Q9NZM1-7;Q9NZM1-4 MYOF Myoferlin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 40.612 40.787 2 0.019908 13800 20181213_JW_Orientia_Karp_1_1 85.355 27.395 49281000 26019000 23262000 0 0 0 0 0 0 9842 1991 8426 59975;59976 38296;38297 38296 2 VIVIPVGIGPHANLK Unmodified 1525.9344 0.93443362 1466;1549 L8E853;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.501 55.767 3 0.025888 22247 20181213_JW_Orientia_Karp_1_3 82.362 61.899 73955000 19407000 17040000 26784000 2353700 3260500 5109400 0 0 9843 1466;1549 8427 59977;59978;59979;59980;59981;59982 38298;38299;38300 38300 3 VIVLGCGPSLGVPVIGCK Unmodified 1824.0001 0.0001467015 1157 Karp_00573 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 69.945 70.055 2 0.00059304 31873 20181213_JW_Orientia_Karp_1_1 120.57 78.573 16221000 4612800 1817200 2247800 0 0 716210 6826500 0 9844 1157 8428 59983;59984;59985;59986;59987 38301;38302;38303 38301 3 VIVTKDHTTIVHDK Unmodified 1604.8886 0.88860564 1296 Karp_01187 yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 23.218 23.628 4 0.012258 4173 20181213_JW_Orientia_Karp_3_2 76.357 47.733 43127000 0 14591000 0 5576000 9041700 4113500 4700300 5105000 9845 1296 8429 59988;59989;59990;59991;59992;59993 38304 38304 1 VIYPAVEGR Unmodified 1002.5498 0.54983053 487 Q6NZX3;Q53Z63;B2RBH2;P21589-2;P21589;B3KQK1 NT5E 5'-nucleotidase yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 41.205 41.492 2 0.030453 13557 20181213_JW_Orientia_Karp_1_3 77.732 34.486 78270000 0 36946000 30341000 7037600 3944700 0 0 0 9846 487 8430 59994;59995;59996;59997 38305;38306 38306 2 VKADSVGETK Unmodified 1032.5451 0.54513908 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By matching 1 1 16.181 16.405 2 0.0084136 2602 20181213_JW_Orientia_Karp_1_3 139.15 50.976 9826300 0 0 8875700 950670 0 0 0 0 9847 1371 8431 59998;59999 38307 38307 1 VKCGLDLNQHELSAIQEVESPAIGR 2 Deamidation (NQ) 2764.3702 0.37015819 1969 Q9C0D2;Q9C0D2-3 CEP295 Centrosomal protein of 295 kDa yes no 0 2 0 1 By MS/MS By MS/MS 1 1 47.109 47.31 3 0.015341 15909 20181213_JW_Orientia_Karp_2_2 57.826 13.083 71679000 0 0 0 0 33409000 38270000 0 0 9848 1969 8432 60000;60001 38308;38309 38308 1217;2081 2 VKEDENVPFLLVGNK Unmodified 1699.9145 0.91448604 1588 P11233;H7C3P7 RALA Ras-related protein Ral-A yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.268 55.535 3 0.0020958 22463 20181213_JW_Orientia_Karp_1_2 124.07 80.762 78799000 10930000 18981000 15726000 2995100 15634000 14533000 0 0 9849 1588 8433 60002;60003;60004;60005;60006;60007 38310;38311;38312;38313;38314;38315 38311 6 VKEEIIEAFVQELR Unmodified 1701.9301 0.93013611 37 A0A024R0V4;P50552 VASP Vasodilator-stimulated phosphoprotein yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 66.342 66.502 3 0.00030263 29083 20181213_JW_Orientia_Karp_1_3 152 88.248 107930000 41312000 12192000 19730000 0 16847000 8144900 0 9698500 9850 37 8434 60008;60009;60010;60011;60012;60013 38316;38317;38318;38319;38320;38321 38318 6 VKEESQLPGTGGPEDVLQPVQR Unmodified 2362.2129 0.21285291 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.806 50.107 3 2.2809E-06 17739 20181213_JW_Orientia_Karp_2_3 143.14 92.741 149790000 22678000 28535000 19473000 27376000 25718000 19070000 0 6939000 9851 1764 8435 60014;60015;60016;60017;60018;60019;60020 38322;38323;38324;38325;38326;38327;38328;38329 38328 8 VKEGMNIVEAMER Unmodified 1504.7378 0.737784 356;1888 V9HWF5;A8K486;P62937;B2RE56;B4DM82;P62937-2;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 0 0 1 By MS/MS By matching 1 1 45.56 45.735 3 0.040809 16436 20181213_JW_Orientia_Karp_1_1 81.128 29.254 31780000 26997000 4783500 0 0 0 0 0 0 9852 356;1888 8436 60021;60022 38330 38330 0 VKEPSVQEATSTSDILK Unmodified 1830.9575 0.95747307 425 B4DED5;M0R088;A9Z1X7;E9PCT1;B7Z7U0;Q8IYB3-2;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 0 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 43.152 43.577 3 0.013866 14164 20181213_JW_Orientia_Karp_3_1 89.358 59.026 13125000 0 5459700 0 3006100 0 1411000 3248700 0 9853 425 8437 60023;60024;60025;60026 38331 38331 1 VKGDVDVSLPK Unmodified 1155.6499 0.6499385 1782 Q09666;Q6ZQN2;Q8N274;Q13727 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 36.881 37.164 3 0.007139 11289 20181213_JW_Orientia_Karp_1_3 105.03 34.975 133490000 64092000 39397000 9089300 0 6152100 3635600 11122000 0 9854 1782 8438 60027;60028;60029;60030;60031;60032 38332;38333 38332 2 VKGEYDVTVPK Unmodified 1233.6605 0.66050319 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 33.732 34.007 3 0.040865 9800 20181213_JW_Orientia_Karp_1_3 74.392 24.198 26085000 11147000 7264100 6179300 1494000 0 0 0 0 9855 1782 8439 60033;60034;60035;60036 38334;38335 38335 2 VKLEAEIATYR Unmodified 1291.7136 0.71360139 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 no no 0 0 0 1 By MS/MS 1 41.865 41.865 3 0.0075394 14370 20181213_JW_Orientia_Karp_1_1 119.03 67.5 0 0 0 0 0 0 0 0 0 9856 208 8440 60037 38336 38336 1 VKNPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Oxidation (M) 3639.8944 0.89438308 1371 Karp_02001 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 64.643 64.792 3;4 6.5316E-08 28286 20181213_JW_Orientia_Karp_1_2 90.136 67.957 1506200000 355260000 421730000 240290000 39540000 276060000 173330000 0 0 9857 1371 8441 60038;60039;60040;60041;60042;60043;60044;60045;60046 38337;38338;38339;38340;38341;38342 38338 956 6 VKNPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Oxidation (M);Deamidation (NQ) 3640.8784 0.87839867 1371 Karp_02001 yes yes 0 1 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 1 4 3 4 1 66.63 66.821 3;4 7.0321E-25 29687 20181213_JW_Orientia_Karp_1_3 149.97 116.41 4094700000 1046200000 436560000 698320000 76406000 763400000 413730000 511400000 148770000 9858 1371 8441 60047;60048;60049;60050;60051;60052;60053;60054;60055;60056;60057;60058;60059;60060;60061;60062;60063;60064;60065;60066;60067;60068;60069;60070;60071 38343;38344;38345;38346;38347;38348;38349;38350;38351;38352;38353;38354;38355;38356;38357;38358 38349 846;847;848;849;850;851;852;853;1853;1854 956 16 VKNPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Unmodified 3623.8995 0.89946846 1371 Karp_02001 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 67.92 68.159 3;4 0.00034667 27235 20181213_JW_Orientia_Karp_2_3 66.399 46.665 1499800000 159310000 379380000 403380000 32220000 130280000 53467000 187410000 154350000 9859 1371 8441 60072;60073;60074;60075;60076;60077;60078;60079;60080;60081;60082;60083 38359;38360;38361;38362;38363;38364;38365;38366;38367;38368;38369;38370 38368 10 VKNPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Oxidation (M);2 Deamidation (NQ) 3641.8624 0.86241425 1371 Karp_02001 yes yes 0 2 1 1 By MS/MS By matching By matching 1 1 1 68.576 68.709 4 0.0079342 30853 20181213_JW_Orientia_Karp_1_1 49.709 30.331 44407000 21773000 0 0 6623300 16010000 0 0 0 9860 1371 8441 60084;60085;60086 38371 38371 846;847;848;849;850;851;852;853;1853;1854 956 1 VKNPNDPNGPMVINPILLNIPQGNPNPVGNPPQR Deamidation (NQ) 3624.8835 0.88348404 1371 Karp_02001 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 5 2 5 5 4 3 69.659 69.803 3;4 1.2584E-11 29818 20181213_JW_Orientia_Karp_1_1 136.88 109.25 2286500000 347710000 321080000 535110000 23927000 263050000 167170000 552640000 75774000 9861 1371 8441 60087;60088;60089;60090;60091;60092;60093;60094;60095;60096;60097;60098;60099;60100;60101;60102;60103;60104;60105;60106;60107;60108;60109;60110;60111;60112;60113;60114;60115;60116;60117;60118;60119 38372;38373;38374;38375;38376;38377;38378;38379;38380;38381;38382;38383;38384;38385;38386;38387;38388;38389;38390;38391;38392;38393 38375 846;847;848;849;850;851;852;853;1853;1854 21 VKNPNDPNGPMVINPILLNIPQGNPNPVGNPPQR 2 Deamidation (NQ) 3625.8675 0.86749963 1371 Karp_02001 yes yes 0 2 0 1 By MS/MS By MS/MS 1 1 71.914 71.989 3 0.018403 32593 20181213_JW_Orientia_Karp_1_2 54.466 39.886 19744000 10842000 8901300 0 0 0 0 0 0 9862 1371 8441 60120;60121 38394;38395 38395 846;847;848;849;850;851;852;853;1853;1854 1 VKPAPDETSFSEALLK Unmodified 1730.9091 0.90906631 660 X6R6Z1;B4DY09;Q53FG3;F4ZW62;Q12905 ILF2 Interleukin enhancer-binding factor 2 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 50.173 50.475 3 0.0096124 18863 20181213_JW_Orientia_Karp_1_3 143.93 115.63 97857000 34762000 22703000 23641000 9023900 3039100 3555400 0 1131300 9863 660 8442 60122;60123;60124;60125;60126;60127;60128 38396 38396 1 VKPLLQVTR Unmodified 1052.6706 0.67061436 944;919 F8W6L6;P35580;P35580-5;P35580-2;P35580-3;P35580-4;F2Z2U8;G8JLL9;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4;M0QY43;B3KWH4 MYH10;MYH14 Myosin-10;Myosin-14 no no 0 0 0 1 By MS/MS By MS/MS 2 1 35.144 35.548 3 0.018617 9558 20181213_JW_Orientia_Karp_3_2 85.533 57.52 2477000 0 0 1987500 0 0 0 0 489570 9864 944;919 8443 60129;60130;60131 38397;38398 38398 2 VKVPISFEGK Unmodified 1102.6386 0.63864553 1100 Karp_00268 yes yes 0 0 0 1 By MS/MS 1 42.387 42.737 3 0.036987 14396 20181213_JW_Orientia_Karp_1_2 81.525 61.763 0 0 0 0 0 0 0 0 0 9865 1100 8444 60132 38399 38399 1 VLAALQER Unmodified 898.52362 0.52361577 239 E9PNW0;E9PJJ2;E9PS34;E9PNJ7;C9J6D1;A0A024RCC9;B7ZAK9;B7ZB83;B4DS05;Q99733;Q99733-2;E9PKI2;E9PP22;E9PKT8;C9JZI7;B7ZAC7;C9J1B1;A8MXH2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 37.382 37.742 2 0.030623 12223 20181213_JW_Orientia_Karp_1_1 82.279 10.14 34002000 9460900 17105000 0 873010 3422200 0 3140600 0 9866 239 8445 60133;60134;60135;60136;60137 38400;38401 38400 2 VLAAVYK Unmodified 762.46398 0.46397563 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BQN4;H3BPS8;A4UCS9;A4UCT0;B7Z1Z9;B7Z3K7;B7Z1N6;B7Z1Y2;A0A024QZ64;B7Z3K9;P09972;B7Z1L5;Q5T7D5;Q8NHT3;A8K430;A0A024R145;P05062 HEL-S-87p;ALDOA;ALDOC;ALDOB Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C;Fructose-bisphosphate aldolase B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 35.331 35.731 2 0.031207 10746 20181213_JW_Orientia_Karp_1_2 99.511 10.884 0 0 0 0 0 0 0 0 0 9867 1546 8446 60138;60139;60140 38402;38403;38404 38402 3 VLAELYVSDR Unmodified 1163.6186 0.61863837 1510 O43776;K7EJ19;K7EIU7;K7EQ35;B4DGT6;O43776-2 NARS Asparagine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 50.356 50.96 2 0.010607 17278 20181213_JW_Orientia_Karp_3_1 92.239 57.087 15031000 0 0 0 9690000 0 0 4134200 1207200 9868 1510 8447 60141;60142;60143 38405 38405 1 VLAGETLSVNDPPDVLDR Unmodified 1908.9793 0.97927114 147;922 A0A024R7C7;Q12906;F4ZW64;A8K590;Q12906-5;Q12906-2;Q12906-3;F4ZW65;Q59GP7;K7EKJ9;K7EQR9;F4ZW66;Q12906-7;Q12906-4;Q12906-6 ILF3 Interleukin enhancer-binding factor 3 no no 0 0 0 0 By matching By MS/MS By matching 1 1 1 61.847 62.083 2 0.0021617 26361 20181213_JW_Orientia_Karp_1_3 106.6 70.186 57481000 23275000 0 30555000 0 0 0 0 3651300 9869 147;922 8448 60144;60145;60146 38406 38406 1 VLANFNLEFGMK Oxidation (M) 1397.7013 0.70132214 1219 Karp_00886 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 61.114 61.407 2 4.6565E-23 26240 20181213_JW_Orientia_Karp_1_2 233.84 160.96 276680000 53702000 58566000 50831000 16427000 43808000 51738000 1605300 0 9870 1219 8449 60147;60148;60149;60150;60151;60152;60153;60154;60155;60156 38407;38408;38409;38410;38411;38412;38413;38414;38415;38416 38409 785 10 VLANFNLEFGMK Unmodified 1381.7064 0.70640752 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 65.845 66.097 2 2.8023E-05 29456 20181213_JW_Orientia_Karp_1_1 172.8 129.39 103920000 27771000 14633000 19878000 3039400 0 7058300 16855000 14684000 9871 1219 8449 60157;60158;60159;60160;60161;60162;60163;60164;60165 38417;38418;38419;38420;38421;38422;38423;38424;38425;38426;38427 38417 11 VLAQLLR Unmodified 811.52797 0.52797287 1840 Q8IXK1;Q59EB6;Q9NPY3;B4DSX2;Q9UHG2 CD93;PCSK1N Complement component C1q receptor;ProSAAS;KEP;Big SAAS;Little SAAS;Big PEN-LEN;PEN;Little LEN;Big LEN yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 46.838 47.188 2 0.029806 15843 20181213_JW_Orientia_Karp_2_2 102.98 16.893 12525000 0 8476400 0 2426500 0 1622100 0 0 9872 1840 8450 60166;60167;60168;60169 38428;38429 38429 2 VLAVNQENEHLMEDYEK Unmodified 2059.9521 0.95207011 1509 O43707;O43707-2;Q96BG6;B4E337;B4DSX0;K7EJH8 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.71 45.952 3 0.0034089 16169 20181213_JW_Orientia_Karp_1_2 95.067 71.268 165670000 38837000 59470000 58290000 0 2267900 0 0 6803500 9873 1509 8451 60170;60171;60172;60173;60174 38430;38431;38432 38431 3 VLAVNQENEQLMEDYEK Oxidation (M) 2066.9467 0.94665039 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;Q86TX4;G3V2N5;G3V2W4 ACTN1 Alpha-actinin-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.75 47.08 2 7.4518E-70 16849 20181213_JW_Orientia_Karp_1_2 286.74 215.59 53560000 14949000 9028700 18097000 2591800 1895600 0 1390800 5607000 9874 133 8452 60175;60176;60177;60178;60179;60180;60181;60182 38433;38434;38435;38436;38437;38438;38439;38440;38441 38434 121 9 VLDELTLAR Unmodified 1028.5866 0.58660996 790;795;924;807;555 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;CON__P19012;CON__A2A4G1;P19012;B3KVF5;A8MT21;P19012-2;C9JTG5;CON__P08779;P08779;B4DWU0;B4E2J5;B4DE59;K7EMS3;CON__Q04695;CON__Q9QWL7;Q04695;Q14666;K7EPJ9;F5GWP8 KRT14;KRT15;KRT16;KRT19;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 17 no no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.071 53.39 2 5.1479E-06 19552 20181213_JW_Orientia_Karp_2_3 202.28 133.1 250910000 103810000 23791000 0 40708000 19055000 63069000 0 468860 + 9875 790;795;555;807;924 8453 60183;60184;60185;60186;60187;60188;60189 38442;38443;38444;38445 38445 4 VLDELTLTK Unmodified 1030.591 0.59102664 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.592 51.937 2 0.00013985 18556 20181213_JW_Orientia_Karp_2_2 186.76 99.068 2988400000 565040000 509420000 472630000 637050000 249100000 425320000 107610000 22240000 + 9876 798 8454 60190;60191;60192;60193;60194;60195;60196;60197 38446;38447;38448;38449;38450;38451;38452;38453 38450 8 VLDFEHFLPMLQTVAK Oxidation (M) 1902.9914 0.99135615 724 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660-2;P60660;G3V1Y7;Q6IBG5;F8VPF3;F8VZU9;F8W180 MYL6 Myosin light polypeptide 6 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 72.112 72.203 2;3 5.3917E-10 26403 20181213_JW_Orientia_Karp_3_1 193.98 124.72 765520000 100390000 61535000 56449000 32721000 154590000 91755000 239430000 28655000 9877 724 8455 60198;60199;60200;60201;60202;60203;60204;60205;60206;60207;60208;60209;60210;60211;60212 38454;38455;38456;38457;38458;38459;38460 38460 430 7 VLDFEHFLPMLQTVAK Unmodified 1886.9964 0.99644153 724 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660-2;P60660;G3V1Y7;Q6IBG5;F8VPF3;F8VZU9;F8W180 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 74.025 74.051 3 4.8296E-14 33998 20181213_JW_Orientia_Karp_1_3 203.85 145.03 532680000 255800000 159090000 111870000 0 1973900 2317400 0 1624200 9878 724 8455 60213;60214;60215;60216;60217;60218 38461;38462;38463;38464 38463 4 VLDGMIAVFDGVAGVEPQSETVWR Unmodified 2574.2788 0.27882398 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 2 2 2 1 2 1 75.878 75.866 2;3 8.5012E-06 35601 20181213_JW_Orientia_Karp_1_2 186.42 137.81 190800000 73048000 0 68504000 5768100 13981000 5034800 22844000 1621000 9879 1094 8456 60219;60220;60221;60222;60223;60224;60225;60226;60227;60228;60229;60230;60231 38465;38466;38467;38468;38469;38470 38466 6 VLDGMIAVFDGVAGVEPQSETVWR Oxidation (M) 2590.2737 0.2737386 1094 Karp_00243 yes yes 0 0 1 0 By MS/MS By MS/MS By matching 1 1 1 73.153 73.252 3 3.1793E-06 33446 20181213_JW_Orientia_Karp_1_3 131.3 93.626 89479000 0 0 40515000 24397000 0 0 24567000 0 9880 1094 8456 60232;60233;60234 38471;38472 38471 612 2 VLDLDLFR Unmodified 989.55458 0.55458155 1685 Q0VGA5;Q53HA4;Q5T5C7;P49591 SARS Serine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.693 68.894 2 0.0042761 27279 20181213_JW_Orientia_Karp_2_2 133.55 21.377 61178000 13328000 17344000 8702400 0 7850500 4426300 4707800 4818800 9881 1685 8457 60235;60236;60237;60238;60239;60240;60241 38473;38474;38475;38476;38477;38478 38475 6 VLDLELK Unmodified 828.49567 0.49566969 1548 Q5TZZ9;P04083;B5BU38;B4DL19 ANXA1 Annexin;Annexin A1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 52.003 52.263 2 0.022372 18920 20181213_JW_Orientia_Karp_2_3 99.375 14.015 147880000 65863000 24119000 0 22251000 3439200 32207000 0 0 9882 1548 8458 60242;60243;60244;60245;60246 38479;38480;38481;38482 38482 4 VLDNYLTSPLPEEVDETSAEDEGVSQR Unmodified 2991.3833 0.38328487 1491 Q5SRT3;Q53FB0;O00299 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 67.494 67.698 3 1.6867E-05 30200 20181213_JW_Orientia_Karp_1_1 109.98 84.96 84884000 71547000 0 0 0 0 0 0 13338000 9883 1491 8459 60247;60248 38483;38484 38483 2 VLDPNTVFALVNYISFK Unmodified 1939.0455 0.045500215 803 CON__P34955 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 78.087 78.045 2 9.6932E-07 29582 20181213_JW_Orientia_Karp_3_1 160.8 104.58 65391000 6836300 0 7022700 7961300 11079000 8128400 22892000 1472000 + 9884 803 8460 60249;60250;60251;60252;60253;60254;60255 38485;38486;38487;38488;38489 38489 5 VLDQIEFLDTK Unmodified 1319.6973 0.69728262 1578 P09914-2;P09914 IFIT1 Interferon-induced protein with tetratricopeptide repeats 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.806 63.036 2 8.3539E-08 26818 20181213_JW_Orientia_Karp_1_3 193.3 144.24 66529000 26173000 16168000 18651000 937850 4599500 0 0 0 9885 1578 8461 60256;60257;60258;60259;60260;60261;60262 38490;38491;38492;38493;38494;38495;38496 38492 7 VLDQPFLMPIEDVFSILGR Oxidation (M) 2204.1551 0.15512702 1176;1244 Karp_00632;Karp_00911 no no 0 0 1 0 By MS/MS By matching By matching 1 1 1 79.254 79.203 2 0.0015969 37340 20181213_JW_Orientia_Karp_1_1 103.66 53.449 13308000 7970600 0 3094800 0 0 2242700 0 0 9886 1176;1244 8462 60263;60264;60265 38497 38497 745 1 VLDQYIFELSR Unmodified 1381.7242 0.72416608 785 CON__ENSEMBL:ENSBTAP00000018229 no no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 66.711 66.933 2 5.1288E-06 26664 20181213_JW_Orientia_Karp_2_3 177.57 86.301 37499000 9673600 2153300 0 1697900 13665000 9150200 466170 693670 + 9887 785 8463 60266;60267;60268;60269;60270;60271;60272;60273 38498;38499;38500;38501;38502;38503 38501 6 VLDSGAPIK Unmodified 898.51238 0.51238239 1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W079 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 36.31 36.6 2 0.019412 11157 20181213_JW_Orientia_Karp_1_2 84.498 7.4401 47968000 21322000 12576000 9770700 0 0 1069600 3229200 0 9888 1560 8464 60274;60275;60276;60277;60278 38504;38505 38504 2 VLDVNTQGGVIGSGQR Unmodified 1598.8376 0.8376327 1205 Karp_00841 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.515 46.835 2 2.7798E-50 16711 20181213_JW_Orientia_Karp_1_2 309.26 224.95 164250000 38627000 28585000 54227000 11232000 9983600 10571000 3656200 7372200 9889 1205 8465 60279;60280;60281;60282;60283;60284;60285;60286 38506;38507;38508;38509;38510;38511 38506 6 VLEAPVR Unmodified 782.46504 0.46503826 1296 Karp_01187 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 34.881 35.211 2 0.036436 10914 20181213_JW_Orientia_Karp_1_1 85.359 25.719 4565700000 1266800000 1311800000 785210000 0 563880000 153830000 317890000 166240000 9890 1296 8466 60287;60288;60289;60290;60291;60292;60293 38512;38513 38512 2 VLEEEWGVSSIPSNIPVATAMAPVQESEEEK Unmodified 3354.6177 0.61771826 1171 Karp_00625 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 2 2 2 2 1 1 2 2 73.263 73.314 3;4 9.2812E-07 33780 20181213_JW_Orientia_Karp_1_1 102.46 73.141 5725000000 1547200000 1209200000 1613500000 194000000 225280000 237000000 560430000 138330000 9891 1171 8467 60294;60295;60296;60297;60298;60299;60300;60301;60302;60303;60304;60305;60306;60307 38514;38515;38516;38517;38518;38519;38520 38514 6 VLEEEWGVSSIPSNIPVATAMAPVQESEEEK Oxidation (M) 3370.6126 0.61263288 1171 Karp_00625 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 71.163 71.269 3 2.7759E-10 28979 20181213_JW_Orientia_Karp_2_3 125.53 104.07 3959800000 878190000 1083000000 856180000 150820000 268650000 194190000 528790000 0 9892 1171 8467 60308;60309;60310;60311;60312;60313;60314;60315 38521;38522;38523;38524;38525;38526;38527 38524 725 6 VLEEGGFFEEK Unmodified 1282.6081 0.60813326 1984 Q9NR12;Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 52.172 52.484 2 0.0050326 20386 20181213_JW_Orientia_Karp_1_2 105.2 33.582 54243000 0 20545000 20352000 8483000 4863700 0 0 0 9893 1984 8468 60316;60317;60318;60319 38528 38528 1 VLEGNEQFINAAK Unmodified 1431.7358 0.73579339 278 Q86W20;A1A508;B1AN99;Q8N2U3;Q7Z5F4;P35030-5;P35030-3;P35030-2;P35030-4;P35030 PRSS1;PRSS3 Trypsin-3 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.283 46.603 2 3.5148E-07 15966 20181213_JW_Orientia_Karp_2_3 182.92 125.77 319570000 45390000 39977000 44137000 62769000 30189000 55384000 12633000 29090000 9894 278 8469 60320;60321;60322;60323;60324;60325;60326;60327 38529;38530;38531;38532 38530 4 VLEPYPSK Unmodified 931.50148 0.50148335 491 Q9H8E3;B4E266;B4DER1;B2RCM2;B4DJ10;Q9P2J5 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 42.748 43.015 2 0.013346 14486 20181213_JW_Orientia_Karp_1_2 98.418 4.0552 15246000 0 10521000 4106100 0 0 619020 0 0 9895 491 8470 60328;60329;60330 38533 38533 1 VLEQLTGQTPVFSK Unmodified 1545.8403 0.84025847 1739 Q08ES8;Q5VVD0;P62913-2;P62913;Q5VVC9;Q5VVC8 RPL11 60S ribosomal protein L11 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.695 57.052 2 1.1504E-34 23764 20181213_JW_Orientia_Karp_1_1 262.15 200.46 140530000 40532000 20758000 31597000 10396000 8637300 7596300 15268000 5739800 9896 1739 8471 60331;60332;60333;60334;60335;60336;60337;60338 38534;38535;38536;38537;38538;38539;38540;38541 38534 8 VLETAEDIQER Unmodified 1301.6463 0.64630969 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;B4DGT1;B4DTV8 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 1 39.555 39.555 2 1.898E-05 13128 20181213_JW_Orientia_Karp_1_1 169.93 26.901 19664000 19664000 0 0 0 0 0 0 0 9897 316 8472 60339 38542 38542 1 VLETFLAK Unmodified 919.53787 0.53786886 1843 Q59GW5;D3DTY9;Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.65 50.95 2 0.014725 19234 20181213_JW_Orientia_Karp_1_3 96.19 19.344 19088000 0 7110300 4565800 3896800 1209800 2305500 0 0 9898 1843 8473 60340;60341;60342;60343;60344;60345 38543;38544 38544 2 VLFASQEIPASPFR Unmodified 1560.83 0.83002813 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 65.034 65.267 2 3.6413E-05 28137 20181213_JW_Orientia_Karp_1_3 166.24 124 305690000 71925000 75492000 109430000 3874500 16797000 11501000 10148000 6518500 9899 1520 8474 60346;60347;60348;60349;60350;60351;60352;60353 38545;38546;38547;38548;38549;38550;38551 38547 6 VLFETDLVNPR Unmodified 1301.698 0.69795133 1596 P14543-2;P14543 NID1 Nidogen-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 59.839 60.105 2 0.00066584 25104 20181213_JW_Orientia_Karp_1_3 134.25 87.785 11886000 0 6808900 3634100 0 0 1442400 0 0 9900 1596 8475 60354;60355;60356 38552;38553 38553 2 VLFSSNGGVVK Deamidation (NQ) 1106.5972 0.59717465 1633 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 1 0 0 By MS/MS By matching By matching 1 1 1 50.585 50.768 2 0.021657 19793 20181213_JW_Orientia_Karp_1_1 92.838 23.24 45183000 17464000 26154000 1565700 0 0 0 0 0 9901 1633 8476 60357;60358;60359 38554 38554 1090 1 VLGEAMTGISQNAK Oxidation (M) 1433.7184 0.71842877 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.048 36.332 2 5.5994E-06 10952 20181213_JW_Orientia_Karp_1_3 177.57 90.685 69893000 18548000 26823000 12145000 0 1250100 1282500 9844100 0 9902 2016 8477 60360;60361;60362;60363;60364;60365 38555;38556;38557;38558;38559;38560 38557 1547 6 VLGETANILETGETLEPAGAHLVLEEK Unmodified 2832.4757 0.47566911 1764 Q02952-3;Q02952-2;Q02952 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 67.174 67.344 3 7.0947E-08 23601 20181213_JW_Orientia_Karp_3_1 123.06 99.848 79552000 24677000 18870000 8669100 0 0 8328000 19007000 0 9903 1764 8478 60366;60367;60368;60369;60370 38561 38561 1 VLGMDPLPSK Oxidation (M) 1071.5634 0.56343168 147;922 A0A024R7C7;Q12906;F4ZW64;A8K590;Q12906-5;Q12906-2;Q12906-3;B4DFG4;F4ZW65;Q59GP7;F4ZW66;Q12906-7;Q12906-4;Q12906-6 ILF3 Interleukin enhancer-binding factor 3 no no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 42.137 42.37 2 0.0078862 14001 20181213_JW_Orientia_Karp_1_3 94.309 58.872 28558000 0 17770000 8775400 0 2011900 0 0 0 9904 147;922 8479 60371;60372;60373;60374 38562;38563;38564 38563 127 3 VLGQLHGGPSSCSATGTNR Deamidation (NQ) 1898.8905 0.89047291 801 CON__P15636 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 5 5 4 4 4 2 5 5 32.897 33.258 2;3 1.4942E-23 9578 20181213_JW_Orientia_Karp_1_1 212.43 162.8 18905000000 3788800000 5100500000 4591700000 1169000000 1733300000 163040000 1365400000 993450000 + 9905 801 8480 60375;60376;60377;60378;60379;60380;60381;60382;60383;60384;60385;60386;60387;60388;60389;60390;60391;60392;60393;60394;60395;60396;60397;60398;60399;60400;60401;60402;60403;60404;60405;60406;60407;60408 38565;38566;38567;38568;38569;38570;38571;38572;38573;38574;38575;38576;38577;38578;38579;38580 38565 289;1656 15 VLGQLHGGPSSCSATGTNR Unmodified 1897.9065 0.90645733 801 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 19 17 17 19 22 12 17 12 38.176 38.506 2;3 9.506E-43 7295 20181213_JW_Orientia_Karp_3_2 249.58 196.79 305270000000 93106000000 6831800000 12071000000 58765000000 7158800000 39635000000 85158000000 2543500000 + 9906 801 8480 60409;60410;60411;60412;60413;60414;60415;60416;60417;60418;60419;60420;60421;60422;60423;60424;60425;60426;60427;60428;60429;60430;60431;60432;60433;60434;60435;60436;60437;60438;60439;60440;60441;60442;60443;60444;60445;60446;60447;60448;60449;60450;60451;60452;60453;60454;60455;60456;60457;60458;60459;60460;60461;60462;60463;60464;60465;60466;60467;60468;60469;60470;60471;60472;60473;60474;60475;60476;60477;60478;60479;60480;60481;60482;60483;60484;60485;60486;60487;60488;60489;60490;60491;60492;60493;60494;60495;60496;60497;60498;60499;60500;60501;60502;60503;60504;60505;60506;60507;60508;60509;60510;60511;60512;60513;60514;60515;60516;60517;60518;60519;60520;60521;60522;60523;60524;60525;60526;60527;60528;60529;60530;60531;60532;60533;60534;60535;60536;60537;60538;60539;60540;60541;60542;60543 38581;38582;38583;38584;38585;38586;38587;38588;38589;38590;38591;38592;38593;38594;38595;38596;38597;38598;38599;38600;38601;38602;38603;38604;38605;38606;38607;38608;38609;38610;38611;38612;38613;38614;38615;38616;38617;38618;38619;38620;38621;38622;38623;38624;38625;38626;38627;38628;38629;38630;38631;38632;38633;38634;38635;38636;38637;38638;38639;38640;38641;38642;38643;38644;38645;38646;38647;38648;38649;38650;38651;38652 38650 65 VLGQLHGGPSSCSATGTNRSDQYGR Unmodified 2604.2099 0.20990957 801 CON__P15636 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 1 1 1 2 1 1 31.591 31.906 4 0.0096882 8207 20181213_JW_Orientia_Karp_2_3 64.761 47.166 1034400000 114980000 189510000 225330000 73876000 39562000 64499000 296280000 30351000 + 9907 801 8481 60544;60545;60546;60547;60548;60549;60550;60551;60552;60553;60554 38653;38654;38655;38656;38657;38658 38657 5 VLGQLHGGPSSCSATGTNRSDQYGR Deamidation (NQ) 2605.1939 0.19392515 801 CON__P15636 yes yes 0 1 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1 1 1 33.443 33.784 4 0.001213 10353 20181213_JW_Orientia_Karp_1_1 85.177 58.398 574520000 183420000 121250000 58083000 68844000 28288000 88727000 20549000 5347500 + 9908 801 8481 60555;60556;60557;60558;60559;60560;60561;60562;60563;60564 38659;38660;38661;38662;38663 38659 289;1656;1657 4 VLGSEPAPVSAETLLSQAVEQLR Unmodified 2393.2802 0.28020419 1918 Q8TD55;Q8TD55-2 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 74.559 74.575 3 0.0026984 34642 20181213_JW_Orientia_Karp_1_1 82.635 52.219 61371000 23216000 15258000 14706000 432690 0 2013800 5745200 0 9909 1918 8482 60565;60566;60567;60568;60569;60570 38664 38664 1 VLGSSVPLEASVLVTIEPAGSVPALGVTPTVR Unmodified 3114.754 0.75401623 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS 1 75.554 75.554 3 0.039218 35338 20181213_JW_Orientia_Karp_1_1 51.783 28.267 0 0 0 0 0 0 0 0 0 9910 195 8483 60571 38665 38665 1 VLHLVIHTLYTNKK Unmodified 1677.993 0.99301113 1251 Karp_00928 yes yes 0 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 37.553 37.938 4 0.0379 10691 20181213_JW_Orientia_Karp_2_2 41.825 13.013 30431000 2041000 1637800 0 1403000 2648100 0 352070 22349000 9911 1251 8484 60572;60573;60574;60575;60576;60577 38666 38666 1 VLIAAHGNSLR Unmodified 1149.6618 0.66184059 1608 Q6P6D7;Q6FHU2;Q53G35;P18669;B4DMJ7;B4DKL5;Q0D2Q6;Q6FHK8;B7Z9E5;B4DJA4;A4D2J6;P15259 PGAM1;hCG_2015269;PGAM2 Phosphoglycerate mutase;Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 31.666 31.982 3 0.014729 8105 20181213_JW_Orientia_Karp_2_1 73.781 43.217 78744000 23124000 35983000 13359000 2987700 1155600 898940 0 1236000 9912 1608 8485 60578;60579;60580;60581;60582;60583;60584 38667;38668;38669;38670;38671;38672 38670 6 VLIALLAR Unmodified 867.59057 0.59057313 1911 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 2 60.752 60.935 2 0.0043163 25907 20181213_JW_Orientia_Karp_1_2 132.94 73.3 19107000 13838000 1521100 3747400 0 0 0 0 0 9913 1911 8486 60585;60586;60587;60588 38673;38674;38675 38674 3 VLIEGSLQTR Unmodified 1114.6346 0.63462279 1302 Karp_01239 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.564 44.866 2 1.9561E-17 16037 20181213_JW_Orientia_Karp_1_1 227.99 126.39 651220000 182950000 220730000 139760000 0 26391000 16675000 62124000 2592600 9914 1302 8487 60589;60590;60591;60592;60593;60594;60595 38676;38677;38678;38679;38680;38681;38682 38676 7 VLIFQEENEIPASVFVK Unmodified 1961.051 0.050979523 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 2 1 72.44 72.498 2;3 1.0002E-23 29587 20181213_JW_Orientia_Karp_2_1 223.39 152.24 2404300000 538260000 437810000 405850000 107420000 200600000 139790000 473420000 101120000 9915 345 8488 60596;60597;60598;60599;60600;60601;60602;60603;60604;60605;60606;60607 38683;38684;38685;38686;38687;38688;38689;38690;38691 38687 9 VLIFQEENEIPASVFVK Deamidation (NQ) 1962.035 0.034995108 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 1 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 73.183 73.241 2 9.6376E-07 29616 20181213_JW_Orientia_Karp_3_2 162.67 112.18 147660000 28228000 24748000 25844000 12315000 0 11475000 32686000 12364000 9916 345 8488 60608;60609;60610;60611;60612;60613;60614 38692;38693;38694 38694 136 3 VLIIGGGDGGVLR Unmodified 1224.719 0.71902112 1609 P19623;K7ESL0 SRM Spermidine synthase yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 57.876 58.158 2 0.03318 24181 20181213_JW_Orientia_Karp_1_2 85.355 47.268 27568000 8006400 8233200 8974800 0 1435000 0 0 918420 9917 1609 8489 60615;60616;60617;60618;60619 38695 38695 1 VLILQQGEMIDEYK Oxidation (M) 1693.8597 0.85967328 1169 Karp_00623 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 54.853 55.288 2 0.0011248 20508 20181213_JW_Orientia_Karp_2_1 131.69 49.521 33499000 0 14166000 12259000 3238500 0 2818800 638830 378290 9918 1169 8490 60620;60621;60622;60623;60624;60625 38696;38697;38698;38699 38698 711 4 VLINVLK Unmodified 797.53747 0.53747492 1438 Karp_02403 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.986 50.256 2 0.011534 17615 20181213_JW_Orientia_Karp_2_1 119.22 32.287 120300000 14313000 18241000 51561000 28939000 0 7247300 0 0 9919 1438 8491 60626;60627;60628;60629;60630;60631 38700;38701;38702;38703;38704 38702 5 VLISDSLDPCCR Unmodified 1433.6643 0.66428471 1505 O43175;V9HW79 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 52.714 53.186 2 0.0012006 18657 20181213_JW_Orientia_Karp_3_1 131.52 91.58 27478000 0 14310000 6503900 2626200 0 0 2974500 1062800 9920 1505 8492 60632;60633;60634;60635;60636 38705;38706 38706 2 VLITTDLLAR Unmodified 1113.6758 0.67575932 387 A8K7F6;P60842;E7EQG2;Q14240;Q14240-2;B4DNH2;Q9NZE6;Q96B07 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 60.727 60.91 2 0.0042668 25549 20181213_JW_Orientia_Karp_1_3 104.01 61.726 20530000 9476300 4480900 6573000 0 0 0 0 0 9921 387 8493 60637;60638;60639 38707;38708 38708 2 VLKPGEMATTAASR Unmodified 1430.7551 0.75514863 1170 Karp_00624 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 32.744 33.094 3 0.032164 9335 20181213_JW_Orientia_Karp_1_3 101.72 55.832 190330000 27998000 105650000 39086000 10129000 0 0 7470100 0 9922 1170 8494 60640;60641;60642;60643;60644 38709 38709 1 VLKPGEMATTAASR Oxidation (M) 1446.7501 0.75006325 1170 Karp_00624 yes yes 0 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 25.366 25.761 3 0.01146 5750 20181213_JW_Orientia_Karp_3_1 103.83 71.218 72808000 0 354580 9051300 12385000 21141000 5762800 17467000 6645900 9923 1170 8494 60645;60646;60647;60648;60649;60650;60651 38710;38711;38712;38713 38712 721 4 VLKQVHPDTGISSK Unmodified 1507.8358 0.83584179 449;1624;1817 B2R4S9;P62807;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;O60814;Q99879;Q99877;P58876;Q0D2M2;P57053;A8K9J7;Q99880;Q96A08;P23527;P33778;Q8N257;Q16778;A0A024RCJ2;P06899 HIST1H2BI;HIST1H2BC;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;H2BFS;HIST1H2BL;HIST1H2BA;HIST1H2BO;HIST1H2BB;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-L;Histone H2B type 1-A;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J no no 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 2 1 1 1 1 1 25.625 26.005 3 0.0034187 6587 20181213_JW_Orientia_Karp_1_1 116.9 80.271 169160000 100960000 1077600 0 9238100 5179200 2412800 9153400 41139000 9924 449;1624;1817 8495 60652;60653;60654;60655;60656;60657;60658;60659 38714;38715;38716 38714 3 VLLEEGSATVPR Unmodified 1269.6929 0.69286595 1612 P20592;Q75MY8 MX2 Interferon-induced GTP-binding protein Mx2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 46.056 46.32 2 0.0075772 16861 20181213_JW_Orientia_Karp_1_1 114.97 73.974 43872000 12329000 12977000 15729000 0 0 0 0 2838000 9925 1612 8496 60660;60661;60662;60663 38717;38718 38717 2 VLLESEQFLTELTR Unmodified 1676.8985 0.89850163 1661 P37108;H0YLA2 SRP14 Signal recognition particle 14 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.751 71.829 2 3.0213E-167 32808 20181213_JW_Orientia_Karp_1_2 364.95 294.54 333470000 79458000 51470000 58639000 21679000 41806000 21399000 59023000 0 9926 1661 8497 60664;60665;60666;60667;60668;60669;60670 38719;38720;38721;38722;38723;38724;38725 38720 7 VLLIEDDPAQASSIELSLANEGIIADK Unmodified 2823.4753 0.47533476 1321 Karp_01283 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 1 74.42 74.443 2;3 1.1343E-33 34244 20181213_JW_Orientia_Karp_1_3 198.73 159.05 1395100000 460830000 345690000 383190000 18580000 16150000 44150000 119910000 6651600 9927 1321 8498 60671;60672;60673;60674;60675;60676;60677;60678;60679;60680;60681;60682;60683 38726;38727;38728;38729;38730;38731;38732;38733 38729 8 VLLIEDDPAQASSIELSLANEGIIADK Deamidation (NQ) 2824.4594 0.45935035 1321 Karp_01283 yes yes 0 1 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 74.938 74.968 3 0.00044317 27905 20181213_JW_Orientia_Karp_3_1 96.793 66.783 91727000 31996000 15710000 27774000 0 5704000 0 10544000 0 9928 1321 8498 60684;60685;60686;60687;60688 38734;38735;38736 38735 764 3 VLLNAGQK Unmodified 841.50215 0.50215205 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 30.311 30.713 2 0.0045869 8335 20181213_JW_Orientia_Karp_1_2 128.86 41.279 49546000 27523000 8535100 5006900 2457000 1532500 0 3164500 1326000 9929 1170 8499 60689;60690;60691;60692;60693;60694;60695 38737;38738 38738 2 VLLQDFSFK Unmodified 1095.5964 0.59644637 1315 Karp_01271 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 62.145 62.365 2 0.0002466 24333 20181213_JW_Orientia_Karp_2_3 169.44 73.248 110390000 76143000 0 0 0 0 26309000 0 7942000 9930 1315 8500 60696;60697;60698;60699;60700 38739;38740;38741;38742;38743 38742 5 VLLSSLR Unmodified 786.49634 0.49633839 1219 Karp_00886 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 43.614 43.9 1 0.019557 15569 20181213_JW_Orientia_Karp_1_1 101.21 29.191 7452900 2985800 3626600 0 0 0 0 0 840540 9931 1219 8501 60701;60702;60703 38744 38744 1 VLLTMITIK Oxidation (M) 1046.641 0.64095372 1444 Karp_02422 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 55.488 55.758 2 0.0025826 22574 20181213_JW_Orientia_Karp_1_2 113.26 62.624 31988000 11927000 5240100 8103300 1414600 0 5303100 0 0 9932 1444 8502 60704;60705;60706;60707;60708;60709;60710 38745;38746;38747;38748;38749;38750 38746 1048 6 VLLTTQGVDMISK Oxidation (M) 1419.7643 0.76431633 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 49.651 49.941 2 0.00091173 18544 20181213_JW_Orientia_Karp_1_3 138.63 82.613 26107000 10620000 6385300 7286100 0 0 0 0 1815000 9933 1796 8503 60711;60712;60713;60714 38751;38752;38753 38753 1442 3 VLLVPGPEK Unmodified 950.58007 0.58006802 60 A0A024R1Z6;Q99536;Q99536-3;B3KUF8;Q99536-2;K7EJM4 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 47.416 47.742 2 0.036335 17261 20181213_JW_Orientia_Karp_1_2 74.127 43.961 200920000 55859000 75467000 38185000 10449000 0 14753000 0 6206500 9934 60 8504 60715;60716;60717;60718;60719;60720 38754;38755 38754 2 VLNNIAENPSISNVEEYQK Unmodified 2160.0699 0.069877064 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1 53.085 53.393 2 5.6549E-13 18884 20181213_JW_Orientia_Karp_3_1 191.89 150.49 80832000 21636000 20031000 21729000 4273500 3116400 3785400 6261300 0 9935 1188 8505 60721;60722;60723;60724;60725;60726;60727;60728 38756;38757;38758;38759;38760;38761 38761 6 VLNNIAENPSISNVEEYQK Deamidation (NQ) 2161.0539 0.053892649 1188 Karp_00703 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 55.902 56.258 2 1.0196E-54 22772 20181213_JW_Orientia_Karp_1_2 267.07 202.27 73810000 16644000 25841000 18907000 9697900 0 0 2720300 0 9936 1188 8505 60729;60730;60731;60732;60733;60734;60735;60736;60737 38762;38763;38764;38765;38766 38763 597;598;599 4 VLPAGLNFIIPMVDR Oxidation (M) 1669.9225 0.92254831 1104 Karp_00281 yes yes 0 0 1 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 73.734 73.777 2 0.023257 33854 20181213_JW_Orientia_Karp_1_3 78.705 44.01 66169000 24360000 12654000 20799000 1071100 0 0 5899600 1386000 9937 1104 8506 60738;60739;60740;60741;60742;60743 38767 38767 621 1 VLPGVDALSNI Unmodified 1096.6128 0.61282471 1539 V9HWF4;P00558-2;P00558;B4DHB3;B4E1H9;B4DWQ3;B4DHM5 HEL-S-68p;PGK1 Phosphoglycerate kinase;Phosphoglycerate kinase 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 73.758 73.782 2 0.0046285 34141 20181213_JW_Orientia_Karp_1_2 106.88 65.851 29897000 9860000 8277700 5806300 0 0 0 5952900 0 9938 1539 8507 60744;60745;60746;60747 38768;38769;38770;38771 38768 4 VLPLEEAYR Unmodified 1088.5866 0.58660996 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 49.937 50.288 2 0.027221 18923 20181213_JW_Orientia_Karp_1_2 79.713 44.094 73952000 0 20406000 41093000 6492200 2410700 2757700 0 792520 9939 185 8508 60748;60749;60750;60751;60752;60753 38772 38772 1 VLPLFPIR Unmodified 953.60622 0.60622319 1190 Karp_00705 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 1 66.015 66.214 2 0.019342 28725 20181213_JW_Orientia_Karp_1_3 88.734 33.97 25510000 0 838400 12323000 80344 7180500 5087600 0 0 9940 1190 8509 60754;60755;60756;60757;60758;60759 38773;38774;38775 38774 3 VLPSITTEILK Unmodified 1212.7329 0.73293985 354 Q6PUJ7;Q6FHP5;Q53FV0;A8K401;P35232;C9JZ20;E7ESE2;E9PCW0;C9JW96;P35232-2 HEL-S-54e;PHB Prohibitin yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 61.456 61.7 2 0.012979 26848 20181213_JW_Orientia_Karp_1_1 89.886 48.438 60848000 18923000 17582000 15599000 0 3134000 1541000 0 4068400 9941 354 8510 60760;60761;60762;60763;60764;60765 38776 38776 1 VLPVGDEVVGIVGYTSK Unmodified 1730.9455 0.94545182 487 Q6NZX3;Q53Z63;B2RBH2;P21589-2;P21589;Q96B60 NT5E 5'-nucleotidase yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 2 1 67.006 67.24 2 1.2337E-08 29717 20181213_JW_Orientia_Karp_1_2 169.79 127 159690000 54566000 28949000 23091000 8770100 15846000 7176500 6458800 14835000 9942 487 8511 60766;60767;60768;60769;60770;60771;60772;60773;60774 38777;38778;38779;38780;38781 38777 5 VLQALEGLK Unmodified 969.58588 0.58588168 433 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 RPS19 40S ribosomal protein S19 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.896 49.197 2 0.0010096 18209 20181213_JW_Orientia_Karp_1_2 131.62 54.842 466720000 84998000 143810000 52758000 65875000 31375000 56206000 0 31700000 9943 433 8512 60775;60776;60777;60778;60779;60780;60781 38782;38783;38784;38785;38786;38787;38788;38789 38783 8 VLQALGSEPIQYAVPVVK Unmodified 1910.0877 0.08769938 1488 O00159;D3DTH7;F5H6E2;B7Z3E5;O00159-2;O00159-3 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 66.029 66.239 2 6.9475E-09 28885 20181213_JW_Orientia_Karp_1_3 169.79 131.39 66686000 33737000 12011000 10635000 0 0 2268600 3848200 4185900 9944 1488 8513 60782;60783;60784;60785;60786;60787 38790;38791;38792;38793;38794 38791 5 VLQATVVAVGSGSK Unmodified 1314.7507 0.75071518 745 Q9UNM1;B8ZZL8;P61604;S4R3N1;A0A024R3X7 EPFP1;HSPE1;HSPE1-MOB4 10 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 44.365 44.753 2 0.0007785 15068 20181213_JW_Orientia_Karp_2_3 140.33 103.26 109770000 0 0 28503000 27111000 0 25895000 28258000 0 9945 745 8514 60788;60789;60790;60791 38795;38796;38797;38798 38797 4 VLQDMGLPTGAEGR Oxidation (M) 1458.7137 0.71367774 147;922 A0A024R7C7;Q12906;F4ZW64;A8K590;Q12906-5;Q12906-2;Q12906-3;B4DFG4;F4ZW65;B4DDF3;F4ZW66;Q12906-7;Q12906-4;Q12906-6 ILF3 Interleukin enhancer-binding factor 3 no no 0 0 1 0 By matching By MS/MS By MS/MS 1 1 2 43.049 43.231 2 0.0083871 14276 20181213_JW_Orientia_Karp_1_3 113.35 77.694 96749000 40397000 34448000 21905000 0 0 0 0 0 9946 147;922 8515 60792;60793;60794;60795 38799;38800;38801;38802 38802 128 4 VLQGQVISAK Unmodified 1041.6182 0.61824444 1233 Karp_00900 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 35.615 35.948 2 2.6144E-05 10816 20181213_JW_Orientia_Karp_1_2 160.82 88.944 830900000 258720000 209070000 205490000 24052000 0 30824000 102740000 0 9947 1233 8516 60796;60797;60798;60799;60800;60801 38803;38804;38805;38806;38807;38808;38809 38804 7 VLQLTSWDEDAWASK Unmodified 1747.8417 0.84171503 19 A0A024QZN4;V9HWK2;P18206-2;P18206;B3KXA2;B4E3Q9;P18206-3 VCL;HEL114 Vinculin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 65.669 65.944 2 0.0006045 23028 20181213_JW_Orientia_Karp_3_1 139.19 105.1 62112000 0 0 42505000 0 0 0 19606000 0 9948 19 8517 60802;60803 38810;38811;38812;38813 38813 4 VLQNIQDIVR Unmodified 1196.6877 0.68772099 1434 Karp_02392 yes yes 0 0 0 0 By MS/MS 1 52.391 52.542 2 0.009425 18930 20181213_JW_Orientia_Karp_2_2 94.409 40.634 9406700 0 0 0 0 9406700 0 0 0 9949 1434 8518 60804 38814 38814 1 VLQSFTVDSSK Unmodified 1209.6241 0.62411768 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 43.243 43.585 2 8.3539E-08 14836 20181213_JW_Orientia_Karp_1_2 193.3 132.39 274080000 78531000 99025000 67922000 0 0 0 24511000 4087400 9950 1520 8519 60805;60806;60807;60808;60809;60810 38815;38816;38817;38818;38819;38820 38816 6 VLRPQVTAVAQQNQGEVPEPQDMK Oxidation (M) 2677.3494 0.34936316 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 43.01 43.352 3 2.8132E-05 14681 20181213_JW_Orientia_Karp_1_3 121.48 91.763 40650000 12194000 13847000 10238000 0 0 0 3798700 571080 9951 1796 8520 60811;60812;60813;60814;60815 38821;38822;38823 38823 1443 3 VLSDKITQIYSDIK Unmodified 1621.8927 0.89268797 1371 Karp_02001 yes yes 0 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 53.72 53.987 3 0.0038123 21405 20181213_JW_Orientia_Karp_1_2 115.37 48.665 97870000 37355000 24591000 19106000 3145000 5422600 8250800 0 0 9952 1371 8521 60816;60817;60818;60819;60820;60821 38824;38825 38824 2 VLSEDEEDVDFDIIHNANDTFTVK Unmodified 2764.2715 0.27154958 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 66.241 66.47 3 0.0010391 29558 20181213_JW_Orientia_Karp_1_1 132.52 96.979 144880000 45587000 26460000 39774000 1928100 12738000 0 1752900 16641000 9953 1520 8522 60822;60823;60824;60825;60826;60827;60828 38826;38827 38826 2 VLSGDLGQLPTGIR Unmodified 1424.7987 0.798728 1818 Q6IB91;Q16822;H0YM31;Q16822-2 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 58.248 58.523 2 2.9625E-05 24400 20181213_JW_Orientia_Karp_1_2 168.83 111.6 74664000 36430000 16740000 21305000 0 0 0 188530 0 9954 1818 8523 60829;60830;60831;60832 38828;38829;38830 38829 3 VLSKPPEGVVSEVEMLSSQER Oxidation (M) 2315.1679 0.16787655 1764 Q02952-3;Q02952-2;Q02952;Q5CZB5 AKAP12;DKFZp686M0430 A-kinase anchor protein 12 yes no 0 0 1 1 By matching By matching By MS/MS By matching 1 1 1 1 55.465 55.831 3 0.033845 20868 20181213_JW_Orientia_Karp_2_3 72.801 25.983 17049000 0 6962900 0 0 5272700 4445500 0 367680 9955 1764 8524 60833;60834;60835;60836 38831 38831 1 VLSSIEQK Unmodified 902.5073 0.50729701 1651 P31947-2;P31947 SFN 14-3-3 protein sigma yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.312 28.67 2 0.0098137 7255 20181213_JW_Orientia_Karp_1_3 104.44 0 99307000 50068000 15045000 13747000 2608900 3512200 4067900 6576700 3681400 9956 1651 8525 60837;60838;60839;60840;60841;60842;60843;60844 38832;38833;38834;38835 38833 4 VLTEAAIAGK Unmodified 971.56515 0.56514624 1169 Karp_00623 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.59 38.84 2 0.00010681 11669 20181213_JW_Orientia_Karp_2_1 148.52 81.353 230680000 111460000 70315000 35060000 7465800 6381900 0 0 0 9957 1169 8526 60845;60846;60847;60848;60849;60850 38836;38837;38838;38839;38840;38841 38839 6 VLTEIIASR Unmodified 1000.5917 0.59169534 1573 V9HWE0;P08758;D6RBL5;E9PHT9 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.361 48.663 2 6.7615E-06 16607 20181213_JW_Orientia_Karp_2_2 199.68 133.11 864540000 176850000 233690000 199500000 120440000 41681000 58529000 0 33840000 9958 1573 8527 60851;60852;60853;60854;60855;60856;60857 38842;38843;38844;38845;38846 38844 5 VLTELLEQER Unmodified 1228.6663 0.66631685 631 B4DRA2;J3KQ96;E7ETY2;Q13428-2;Q13428-8;Q13428-6;Q13428-7;Q13428;Q13428-3;Q13428-4 TCOF1 Treacle protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 53.473 53.748 2 0.00036321 21674 20181213_JW_Orientia_Karp_1_1 148.91 82.616 32016000 9853900 8962500 7791500 5407600 0 0 0 0 9959 631 8528 60858;60859;60860;60861;60862 38847;38848;38849;38850 38847 4 VLTGGVDSNALQK Unmodified 1300.6987 0.69867961 1333 Karp_01373 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 40.355 40.688 2 5.5386E-15 12292 20181213_JW_Orientia_Karp_2_2 222.18 125.52 275400000 0 90302000 123570000 61524000 0 0 0 0 9960 1333 8529 60863;60864;60865;60866 38851;38852 38852 2 VLTIDPTEFK Unmodified 1161.6281 0.62814043 1704 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 58.543 58.753 2 0.01736 24543 20181213_JW_Orientia_Karp_1_2 85.676 29.418 27684000 11912000 6926700 6742800 0 1065400 1037400 0 0 9961 1704 8530 60867;60868;60869;60870;60871 38853 38853 1 VLTLDPQYR Unmodified 1103.5975 0.597509 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 47.942 48.287 2 0.0027456 16509 20181213_JW_Orientia_Karp_2_1 106.6 69.535 632100000 142850000 147680000 83184000 91392000 63832000 35504000 263630 67397000 9962 1266 8531 60872;60873;60874;60875;60876;60877;60878;60879 38854;38855;38856;38857;38858;38859;38860 38857 7 VLTPEEQLADK Unmodified 1241.6503 0.65033243 120 A0A024R5S5;O75822-3;O75822;O75822-2 EIF3S1;EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 42.284 42.577 2 0.023909 13510 20181213_JW_Orientia_Karp_2_1 83.045 47.534 107510000 28456000 19737000 12521000 10312000 10208000 3714700 22565000 0 9963 120 8532 60880;60881;60882;60883;60884;60885;60886 38861 38861 1 VLTVINQTQK Unmodified 1142.6659 0.66592292 1670 P42766;F2Z388;A0A024R866 RPL35 60S ribosomal protein L35 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.371 38.716 2 1.2372E-34 12070 20181213_JW_Orientia_Karp_1_3 269.99 170.85 823980000 214900000 304410000 138130000 9147500 6500700 0 130410000 20473000 9964 1670 8533 60887;60888;60889;60890;60891;60892;60893 38862;38863;38864;38865;38866;38867;38868;38869 38864 8 VLTVINQTQK Deamidation (NQ) 1143.6499 0.6499385 1670 P42766;F2Z388;A0A024R866 RPL35 60S ribosomal protein L35 yes no 0 1 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 42.365 42.665 2 0.0016695 14315 20181213_JW_Orientia_Karp_1_2 126.07 67.286 91029000 38480000 28697000 16723000 0 0 0 7128200 0 9965 1670 8533 60894;60895;60896;60897 38870;38871 38870 1117;1953 2 VLVALYEEPEKPNSALDFLK Unmodified 2274.2148 0.21475039 1864 Q6IB68;Q99417 MYCBP C-Myc-binding protein yes no 0 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 66.656 66.834 3 0.016061 26612 20181213_JW_Orientia_Karp_2_1 80.609 56.665 51741000 9434800 5217300 6061000 6940100 15222000 7944300 922280 0 9966 1864 8534 60898;60899;60900;60901;60902;60903;60904 38872;38873;38874;38875 38873 4 VLVEPDAGAGVAVMK Oxidation (M) 1470.7752 0.77521537 1668 P42126-2;P42126 ECI1 Enoyl-CoA delta isomerase 1, mitochondrial yes no 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 47.895 48.239 2 0.0039384 17975 20181213_JW_Orientia_Karp_1_1 108.7 52.439 20170000 2135500 9611300 4939800 0 0 1308800 172210 2002900 9967 1668 8535 60905;60906;60907;60908;60909;60910 38876 38876 1294 1 VLVEPIQNDEAHGK Deamidation (NQ) 1548.7784 0.77838649 1297 Karp_01188 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 3 1 3 1 38.645 38.942 3 0.00087781 11162 20181213_JW_Orientia_Karp_2_2 140.33 86.36 8514000000 2648600000 2145200000 1770200000 458060000 517950000 28612000 937870000 7429500 9968 1297 8536 60911;60912;60913;60914;60915;60916;60917;60918;60919;60920;60921;60922;60923;60924;60925;60926;60927;60928 38877;38878;38879;38880;38881;38882;38883;38884 38881 723 8 VLVEPIQNDEAHGK Unmodified 1547.7944 0.79437091 1297 Karp_01188 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 2 2 1 1 36.534 36.856 2;3 1.6412E-07 10316 20181213_JW_Orientia_Karp_2_1 182.41 120.24 18447000000 238450000 5069600000 3892400000 55752000 7248800000 0 1940000000 2422700 9969 1297 8536 60929;60930;60931;60932;60933;60934;60935;60936;60937;60938;60939;60940;60941;60942;60943 38885;38886;38887;38888;38889;38890;38891;38892;38893 38889 9 VLVEPIQNDEAHGKILIPDTAK Unmodified 2399.306 0.30602501 1297 Karp_01188 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 50.11 50.36 4 0.023346 17635 20181213_JW_Orientia_Karp_2_2 50.404 37.97 178250000 48356000 24372000 54365000 20198000 8209700 22750000 0 0 9970 1297 8537 60944;60945;60946;60947;60948;60949 38894;38895 38895 2 VLVNVGDIVK Unmodified 1054.6386 0.63864553 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.927 56.249 2 0.00025032 23304 20181213_JW_Orientia_Karp_1_1 143.37 88.762 162180000 38327000 10634000 14433000 1392600 25845000 41767000 29779000 0 9971 1170 8538 60950;60951;60952;60953;60954;60955;60956 38896;38897;38898;38899;38900;38901;38902 38896 7 VLVQNAAGSQEK Unmodified 1242.6568 0.65681479 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 27.688 27.988 2 2.4294E-07 7086 20181213_JW_Orientia_Karp_1_2 211.86 150.17 26570000 12953000 5921600 6464800 0 0 0 1229900 0 9972 2016 8539 60957;60958;60959;60960;60961 38903;38904;38905;38906;38907 38904 5 VLVSLSAGGR Unmodified 957.56073 0.56072956 554 Q6P452;B4DDZ4;V9HW59;Q6LES2;P09525;Q59FK3;B4DE02;P09525-2 ANXA4;HEL-S-274 Annexin;Annexin A4 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 43.771 44.034 2 0.00090418 15133 20181213_JW_Orientia_Karp_1_2 126.24 69.522 27939000 5511300 5826300 0 15686000 0 915490 0 0 9973 554 8540 60962;60963;60964;60965 38908;38909 38908 2 VLVTGATGLLGR Unmodified 1155.6976 0.69755739 386 A8K7A4;Q9NZL9-3;Q9NZL9-4;Q9NZL9-2;Q9NZL9;E5RJR3;Q9NZL9-5 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 54.819 55.085 2 0.0016197 22161 20181213_JW_Orientia_Karp_1_2 126.39 57.83 47871000 12475000 14870000 13027000 1502200 3036000 2960900 0 0 9974 386 8541 60966;60967;60968;60969;60970;60971 38910;38911 38911 2 VLWLFGMDLNK Oxidation (M);Deamidation (NQ) 1351.6846 0.68460945 355 A8K407;P59046-5;P59046-3;P59046-6;P59046;P59046-7 NLRP12 NACHT, LRR and PYD domains-containing protein 12 yes no 0 1 1 0 By MS/MS 1 58.969 59.167 2 0.024245 24576 20181213_JW_Orientia_Karp_1_3 67.494 29.682 24362000 0 0 24362000 0 0 0 0 0 9975 355 8542 60972 38912 38912 141 244 0 VLYDAEISQIHQSVTDTNVILSMDNSR Oxidation (M) 3063.4819 0.48189348 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.826 63.085 3 1.8313E-10 27301 20181213_JW_Orientia_Karp_1_2 135.86 111.97 257340000 57074000 32419000 54756000 3170500 51319000 32939000 0 25664000 + 9976 804;1657 8543 60973;60974;60975;60976;60977;60978;60979 38913;38914;38915;38916;38917;38918;38919;38920 38915 469 8 VLYDAEISQIHQSVTDTNVILSMDNSR Oxidation (M);Deamidation (NQ) 3064.4659 0.46590906 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 1 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 63.965 64.211 3 2.9363E-05 28121 20181213_JW_Orientia_Karp_1_2 107.95 85.415 52310000 17761000 12553000 0 0 9353300 11093000 0 1549300 + 9977 804;1657 8543 60980;60981;60982;60983;60984;60985 38921;38922 38922 300;1661;1662 469 2 VLYDAEISQIHQSVTDTNVILSMDNSR Unmodified 3047.487 0.48697886 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 66.837 66.986 3 0.00010198 29575 20181213_JW_Orientia_Karp_1_2 119.18 94.196 156390000 34631000 28286000 24261000 9894400 33628000 25690000 0 0 + 9978 804;1657 8543 60986;60987;60988;60989;60990;60991 38923;38924;38925;38926;38927;38928;38929 38924 7 VLYDAEISQIHQSVTDTNVILSMDNSR 2 Deamidation (NQ) 3049.455 0.45501003 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 2 0 0 By matching By MS/MS By matching 1 1 1 67.954 68.154 3 0.0050627 30399 20181213_JW_Orientia_Karp_1_2 93.407 69.967 17790000 5687400 10607000 0 0 0 0 1494900 0 + 9979 804;1657 8543 60992;60993;60994 38930 38930 300;1661;1662 0 VLYDAEISQIHQSVTDTNVILSMDNSR Deamidation (NQ) 3048.471 0.47099444 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 1 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 3 68.116 68.353 3 7.7145E-08 25909 20181213_JW_Orientia_Karp_3_2 146.45 124.09 51500000 0 5097400 19480000 3700300 7581200 2454900 7102400 6083000 + 9980 804;1657 8543 60995;60996;60997;60998;60999;61000;61001;61002;61003 38931;38932;38933;38934;38935 38934 300;1661;1662 5 VMAAENIPENPLK Unmodified 1424.7334 0.73335055 1669 P42224;J3KPM9;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 51.139 51.501 2 0.0021153 20108 20181213_JW_Orientia_Karp_1_1 125.23 65.059 50141000 15459000 15360000 18035000 0 0 0 936450 349990 9981 1669 8544 61004;61005;61006;61007;61008 38936;38937 38936 2 VMAAENIPENPLK Oxidation (M) 1440.7283 0.72826518 1669 P42224;J3KPM9;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 0 0 1 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 47.075 47.348 2 0.00075375 15206 20181213_JW_Orientia_Karp_3_2 143.24 93.738 91877000 23665000 31112000 19693000 3906300 1814900 5515900 0 6170500 9982 1669 8544 61009;61010;61011;61012;61013;61014;61015 38938;38939 38939 1295 2 VMADLAVHNADSFLHLVELTK Oxidation (M) 2338.1991 0.1991171 1249 Karp_00926 yes yes 0 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 2 2 2 1 2 65.171 65.387 3;4 0.0035513 25776 20181213_JW_Orientia_Karp_2_3 88.282 60.771 232580000 47803000 15348000 32212000 5468600 61702000 29820000 28452000 11774000 9983 1249 8545 61016;61017;61018;61019;61020;61021;61022;61023;61024;61025;61026;61027;61028;61029 38940;38941;38942;38943;38944 38943 808 5 VMADLAVHNADSFLHLVELTK Unmodified 2322.2042 0.20420248 1249 Karp_00926 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 68.833 69.011 3;4 7.7172E-09 31271 20181213_JW_Orientia_Karp_1_1 162.92 141.52 280070000 51351000 67727000 38189000 10675000 33733000 22812000 39154000 16428000 9984 1249 8545 61030;61031;61032;61033;61034;61035;61036;61037;61038;61039;61040;61041;61042;61043;61044 38945;38946;38947;38948;38949;38950;38951;38952;38953 38945 9 VMALVNTTPGR Oxidation (M) 1173.6176 0.61759251 1169 Karp_00623 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 37.879 38.196 2 0.0004516 11929 20181213_JW_Orientia_Karp_1_2 139.43 69.435 42816000 9295300 9741200 13765000 2027600 1279900 0 6707400 0 9985 1169 8546 61045;61046;61047;61048;61049;61050;61051 38954;38955;38956;38957;38958;38959;38960 38955 712 7 VMALVNTTPGR Unmodified 1157.6227 0.62267789 1169 Karp_00623 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.266 44.576 2 0.00061058 15258 20181213_JW_Orientia_Karp_1_3 136.52 92.312 55870000 20076000 21595000 9886400 0 926990 0 2982700 402400 9986 1169 8546 61052;61053;61054;61055;61056;61057 38961 38961 1 VMELVSPMGK 2 Oxidation (M) 1121.5461 0.54606706 1333 Karp_01373 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.091 35.449 2 0.0012141 10078 20181213_JW_Orientia_Karp_3_1 116.05 66.633 180030000 24526000 30255000 33764000 7102700 8530000 5087700 62376000 8385000 9987 1333 8547 61058;61059;61060;61061;61062;61063;61064;61065 38962;38963;38964;38965;38966;38967;38968;38969 38968 892;893 8 VMELVSPMGK Oxidation (M) 1105.5512 0.55115243 1333 Karp_01373 yes yes 0 0 1 0 By MS/MS 1 43.915 43.915 2 0.021027 15494 20181213_JW_Orientia_Karp_1_1 94.692 47.089 0 0 0 0 0 0 0 0 0 9988 1333 8547 61066 38970 38970 892;893 1 VMELVSPMGK Unmodified 1089.5562 0.55623781 1333 Karp_01373 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 51.445 51.746 2 0.0036393 19815 20181213_JW_Orientia_Karp_1_3 107.15 44.331 34443000 2079900 0 22583000 6605100 2949600 0 0 225060 9989 1333 8547 61067;61068;61069;61070;61071;61072 38971;38972 38972 2 VMFEAPSELTQR Oxidation (M) 1422.6813 0.68131498 1995 Q9P2D7-4;Q9P2D7 DNAH1 Dynein heavy chain 1, axonemal yes no 0 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 52.553 52.856 2 0.013291 21030 20181213_JW_Orientia_Karp_1_2 88.37 8.3841 75739000 4992500 68017000 0 0 0 2470600 0 259010 9990 1995 8548 61073;61074;61075;61076 38973 38973 1530 1 VMGALSLMNNK 2 Oxidation (M) 1208.5893 0.58932885 2031 yes no 0 0 2 0 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 43.887 44.187 2 0.026688 15189 20181213_JW_Orientia_Karp_1_2 73.248 16.519 187620000 34177000 86786000 30194000 0 0 12572000 23891000 0 + 9991 2031 8549 61077;61078;61079;61080;61081;61082 38974 38974 1554;1555 1 VMIGLTYIYGIGR Unmodified 1454.7956 0.79555688 1221 Karp_00888 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 71.931 71.997 2 0.0012851 33041 20181213_JW_Orientia_Karp_1_1 146.11 101.08 102400000 20629000 38020000 21250000 0 4844600 3438600 14214000 0 9992 1221 8550 61083;61084;61085;61086;61087;61088 38975 38975 1 VMIPQDEYPEINFVGLLIGPR Oxidation (M) 2415.2508 0.25081832 107 A0A024R588;A0A024R566;B4DJU4;A0A024R5D9;A0A024R572;Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;B4DSE4;Q15637-7;Q15637-5;B4DX42 SF1 Splicing factor 1 yes no 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 76.421 76.404 3 8.2647E-05 30986 20181213_JW_Orientia_Karp_2_2 124.73 102.51 40284000 8779400 0 7209900 4791100 8288200 4930800 6284300 0 9993 107 8551 61089;61090;61091;61092;61093;61094 38976;38977;38978;38979;38980 38978 104 5 VMIPQDEYPEINFVGLLIGPR Unmodified 2399.2559 0.2559037 107 A0A024R588;A0A024R566;B4DJU4;A0A024R5D9;A0A024R572;Q15637-4;Q15637-6;Q15637-3;Q15637-2;Q15637;B4DSE4;Q15637-7;Q15637-5;B4DX42 SF1 Splicing factor 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 76.895 76.894 3 0.04236 35900 20181213_JW_Orientia_Karp_1_3 64.2 32.738 9132000 4435600 0 1456800 1979900 1259700 0 0 0 9994 107 8551 61095;61096;61097;61098 38981 38981 0 VMIYQDEVK Oxidation (M) 1139.5533 0.55326092 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5 PTRF Polymerase I and transcript release factor yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 37.869 38.186 2 0.00025397 11952 20181213_JW_Orientia_Karp_1_2 163.15 61.72 386770000 70482000 89325000 101130000 5895300 37785000 0 82160000 0 9995 1868 8552 61099;61100;61101;61102;61103;61104;61105;61106 38982;38983;38984;38985;38986;38987;38988;38989;38990 38983 1480 9 VMIYQDEVK Unmodified 1123.5583 0.5583463 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5 PTRF Polymerase I and transcript release factor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 41.981 42.306 2 0.0027611 13523 20181213_JW_Orientia_Karp_3_1 114.89 58.174 120460000 56377000 0 43750000 3478000 0 0 16854000 0 9996 1868 8552 61107;61108;61109;61110;61111;61112 38991;38992;38993;38994;38995 38995 5 VMLGETNPADSKPGTIR Oxidation (M) 1800.904 0.90399771 1620 Q6FHN3;Q32Q12;P22392;P22392-2;E7ERL0;J3KPD9;P15531;P15531-2;F6XY72;O60361 NME2;NME1-NME2;NME1;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A;Putative nucleoside diphosphate kinase yes no 0 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.072 37.422 3 0.017737 11196 20181213_JW_Orientia_Karp_2_3 86.777 48.578 129760000 34318000 29737000 35543000 12318000 0 0 17847000 0 9997 1620 8553 61113;61114;61115;61116;61117;61118;61119 38996;38997;38998;38999 38997 1244 4 VMLPMLK Oxidation (M) 846.47072 0.47071727 1300 Karp_01233 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 51.414 51.701 2 0.021456 18417 20181213_JW_Orientia_Karp_2_1 94.95 38.828 75987000 17509000 32130000 0 15677000 0 10671000 0 0 9998 1300 8554 61120;61121;61122;61123 39000;39001;39002;39003 39002 860 4 VMNLISK Oxidation (M) 819.45242 0.45242467 676 B4E0U6;P50502;Q1XBU6;B7ZA40;Q8NFI4 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 1 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 30.878 31.208 2 0.013654 7311 20181213_JW_Orientia_Karp_2_2 109.01 18.236 24859000 9466600 3575000 3398000 0 3634100 0 4785600 0 9999 676 8555 61124;61125;61126;61127;61128;61129;61130;61131 39004;39005;39006;39007;39008 39005 415 5 VMQEQGTHPK Oxidation (M) 1169.5499 0.54990688 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS By matching 1 2 1 6.5116 6.9761 2 0.00088897 1104 20181213_JW_Orientia_Karp_1_2 122.94 79.131 593400 0 121290 292140 0 0 0 0 179970 10000 47 8556 61132;61133;61134;61135 39009;39010;39011 39010 57 3 VMQEQGTHPK Unmodified 1153.555 0.55499226 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 14.968 15.292 2 0.0015668 2329 20181213_JW_Orientia_Karp_1_3 117.53 61.976 2142800 0 1288900 853850 0 0 0 0 0 10001 47 8556 61136;61137 39012;39013 39013 2 VMQFQGMK 2 Oxidation (M) 999.45177 0.45177274 376 Q96CY7;B7Z4A4;B7Z4S8;Q6I9U9;Q53XC6;A8K669;Q99538-3;Q99538-2;Q99538 LGMN Legumain yes no 0 0 2 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 22.633 22.984 2 0.0080379 3692 20181213_JW_Orientia_Karp_3_2 100.07 59.963 7846300 658420 1935300 0 1541600 563110 778280 930250 1439300 10002 376 8557 61138;61139;61140;61141;61142;61143;61144 39014;39015;39016;39017 39017 265;266 4 VMQISPK Oxidation (M) 817.43677 0.4367746 1455 Karp_02592 yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 23.301 23.603 2 0.010454 4009 20181213_JW_Orientia_Karp_3_2 116.9 28.261 18388000 2818900 6025500 6820600 0 0 1370900 0 1352400 10003 1455 8558 61145;61146;61147;61148;61149 39018;39019;39020 39020 1067 3 VMSEFNNNFR Oxidation (M) 1272.5557 0.55572054 211 F8VNT9;F8VV56;F8W022;F8VWK8;C9JV86;W6A4U0;A0A024RB05;P08962-3;P08962-2;P08962 CD63 Tetraspanin;CD63 antigen yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 37.865 38.214 2 0.00066786 11968 20181213_JW_Orientia_Karp_1_2 128.28 77.215 41330000 8592000 11983000 16004000 1793600 0 0 2957200 0 10004 211 8559 61150;61151;61152;61153;61154 39021;39022;39023;39024 39022 164 4 VMSYICSQQDILSR Oxidation (M) 1714.8018 0.80184082 813 CON__Q3SZ57 yes yes 0 0 1 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 50.117 50.451 2 0.00044859 16985 20181213_JW_Orientia_Karp_3_1 145.31 106.74 8233500 0 0 2627300 0 2275300 0 3330800 0 + 10005 813 8560 61155;61156;61157;61158 39025;39026 39026 474 2 VMYTPMAPGNYLISVK Oxidation (M) 1798.8998 0.89976395 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By matching By MS/MS By matching 1 1 1 61.358 61.541 2 0.014278 26357 20181213_JW_Orientia_Karp_1_2 96.866 57.85 22017000 9206300 5923200 6887700 0 0 0 0 0 10006 1520 8561 61159;61160;61161 39027 39027 1133 0 VNDGPFETFVGR Unmodified 1336.6412 0.64116473 1175 Karp_00629 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 57.722 58.067 2 5.8507E-17 24114 20181213_JW_Orientia_Karp_1_2 222.18 179.32 555990000 131790000 158750000 119020000 33290000 58347000 36569000 101560 18124000 10007 1175 8562 61162;61163;61164;61165;61166;61167;61168;61169 39028;39029;39030;39031;39032;39033;39034;39035;39036 39030 9 VNDGPFETFVGR Deamidation (NQ) 1337.6252 0.62518031 1175 Karp_00629 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 1 2 63.181 63.387 2 0.00058109 28475 20181213_JW_Orientia_Karp_1_1 156.01 69.824 92678000 38760000 20692000 16162000 1032900 6254100 8353100 0 1424800 10008 1175 8562 61170;61171;61172;61173;61174;61175;61176;61177;61178;61179;61180;61181;61182 39037;39038;39039;39040;39041;39042;39043;39044;39045;39046;39047;39048;39049 39038 580 13 VNEISEITQSLK Unmodified 1359.7246 0.72456001 1298 Karp_01190 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 54.56 54.875 2 0.00021272 19052 20181213_JW_Orientia_Karp_3_2 179.94 109.54 65236000 9892000 21153000 19401000 4661000 6005700 3270100 0 853640 10009 1298 8563 61183;61184;61185;61186;61187;61188;61189 39050;39051;39052 39052 3 VNENLWR Unmodified 929.47191 0.47191456 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 39.694 40.002 2 0.00098593 12891 20181213_JW_Orientia_Karp_1_2 181.81 114.77 1799800000 483810000 301290000 649650000 125510000 74904000 12060000 152550000 0 10010 1349 8564 61190;61191;61192;61193;61194;61195;61196 39053;39054;39055;39056;39057 39054 5 VNENLWR Deamidation (NQ) 930.45593 0.45593014 1349 Karp_01525 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 44.916 45.155 2 0.0088806 15317 20181213_JW_Orientia_Karp_1_2 163.67 58.468 118260000 51918000 38395000 22611000 0 441460 1215700 3678100 0 10011 1349 8564 61197;61198;61199;61200;61201;61202;61203;61204;61205 39058;39059;39060;39061;39062;39063 39060 802 6 VNFTVDQIR Unmodified 1090.5771 0.57710791 1593 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 EEF2 Elongation factor 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.373 48.674 2 8.5498E-06 16728 20181213_JW_Orientia_Karp_2_1 196.79 101.44 240210000 43021000 62285000 58153000 36957000 13569000 15898000 0 10327000 10012 1593 8565 61206;61207;61208;61209;61210;61211;61212 39064;39065;39066;39067;39068;39069;39070 39067 7 VNGRPLEMIEPR Deamidation (NQ) 1410.7289 0.72893388 1727 P62249;M0R3H0;Q6IPX4;M0R1M5 RPS16 40S ribosomal protein S16 yes no 0 1 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 47.914 48.088 3 0.022091 17541 20181213_JW_Orientia_Karp_1_2 93.011 44.352 17301000 5142900 7852100 3719500 0 586870 0 0 0 10013 1727 8566 61213;61214;61215;61216 39071;39072 39072 1139 2 VNHVTLSQPK Unmodified 1121.6193 0.61930707 327 H0YLF3;A6XND9;F5H6I0;B4E0X1;P61769;A6XMH5 B2M Beta-2-microglobulin;Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.452 24.784 3 0.00052541 6093 20181213_JW_Orientia_Karp_1_1 118.23 70.659 151280000 27441000 28283000 13967000 23871000 17405000 15084000 13388000 11841000 10014 327 8567 61217;61218;61219;61220;61221;61222;61223;61224 39073;39074;39075;39076;39077;39078;39079;39080 39073 8 VNIGQGSHPQK Unmodified 1163.6047 0.60471964 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 1 19.212 19.404 2;3 0.0026254 3761 20181213_JW_Orientia_Karp_1_1 115.23 73.805 26239000 9296100 10581000 4983700 0 0 750190 628550 0 10015 1520 8568 61225;61226;61227;61228;61229;61230;61231 39081;39082;39083;39084 39081 4 VNIIPLIAK Unmodified 979.643 0.64300263 2;1842 B4DNE4;G3V1Q4;B4DPQ6;A0A023T695;B4DUD6;Q8TC62;Q3LIE9;A4GYY8;E7ES33;E7EPK1;A8K3D0;Q16181-2;Q16181;H0Y3Y4;Q3B7A3;Q6ZU15;Q59EY4 SEPT7;Nbla02942;DKFZp686F17268;SEPT14 Septin-7;Septin-14 no no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 61.51 61.762 2 0.018488 23817 20181213_JW_Orientia_Karp_2_2 85.064 0 22224000 11836000 4026000 0 0 2587200 1771400 0 2003400 10016 2;1842 8569 61232;61233;61234;61235;61236;61237 39085;39086 39086 2 VNILFDFVK Unmodified 1093.6172 0.61718181 139 Q6IBU0;A0A024R6Q1;P55010 EIF5 Eukaryotic translation initiation factor 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.814 70.934 2 0.0039038 32361 20181213_JW_Orientia_Karp_1_2 109.44 68.012 16112000 0 4944000 2294800 0 1785000 1795500 5292600 0 10017 139 8570 61238;61239;61240;61241;61242;61243 39087;39088;39089;39090;39091;39092 39088 6 VNISVIFK Unmodified 918.55385 0.55385327 1377 Karp_02114 yes yes 0 0 0 0 By MS/MS 1 56.772 57.122 2 0.016435 23484 20181213_JW_Orientia_Karp_1_2 93.429 36.326 3760000 0 3760000 0 0 0 0 0 0 10018 1377 8571 61244 39093 39093 1 VNIVPVIAK Unmodified 951.6117 0.6117025 704 B5MCX3;Q15019;Q15019-3;Q15019-2;C9J2Q4;H7C2Y0;H7C310 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 52.338 52.513 2 0.037785 20455 20181213_JW_Orientia_Karp_1_2 73.26 28.179 47679000 36285000 11394000 0 0 0 0 0 0 10019 704 8572 61245;61246 39094;39095 39095 2 VNLAELFK Unmodified 932.53312 0.53311783 1645 V9HW35;P30044-2;P30044;P30044-3 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 61.779 62.022 2 0.0030133 22934 20181213_JW_Orientia_Karp_3_2 156.51 61.845 83009000 7735600 12827000 21935000 0 19951000 14002000 0 6558200 10020 1645 8573 61247;61248;61249;61250;61251;61252;61253 39096;39097;39098;39099 39099 4 VNLEINSLGCMESR Oxidation (M) 1636.7549 0.75489063 1179 Karp_00654 yes yes 0 0 1 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 50.924 51.232 2 1.3699E-07 17459 20181213_JW_Orientia_Karp_3_1 182.37 113.02 32585000 4882500 10830000 4308300 3660900 2861100 1984800 4058000 0 10021 1179 8574 61254;61255;61256;61257;61258;61259;61260 39100;39101 39101 750 2 VNLLSVLEAAK Unmodified 1155.6863 0.68632401 1960 Q9BRX8-2;Q9BRX8 FAM213A Redox-regulatory protein FAM213A yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 69.003 69.169 2 0.0027128 31176 20181213_JW_Orientia_Karp_1_2 125.23 77.623 63238000 20162000 10794000 0 1406100 7467000 2767200 17326000 3316000 10022 1960 8575 61261;61262;61263;61264;61265;61266;61267 39102;39103;39104 39102 3 VNMMSMPLR 3 Oxidation (M) 1125.4981 0.49807101 1358 Karp_01807 yes yes 0 0 3 0 By MS/MS 1 24.368 25.179 2 0.013371 4756 20181213_JW_Orientia_Karp_3_2 76.064 28.216 0 0 0 0 0 0 0 0 0 10023 1358 8576 61268 39105 39105 934;935;936 1 VNNHSNTLR Unmodified 1053.5316 0.5315547 1077 Karp_00059 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 11.903 12.236 2 0.00074282 1789 20181213_JW_Orientia_Karp_1_3 150.36 78.223 1160000 277830 175610 239380 91070 100490 0 275590 0 10024 1077 8577 61269;61270;61271;61272;61273;61274 39106;39107;39108;39109;39110 39109 5 VNNHSNTLR Deamidation (NQ) 1054.5156 0.51557028 1077 Karp_00059 yes yes 0 1 0 0 By MS/MS By MS/MS 1 1 15.433 15.707 2 0.02452 2625 20181213_JW_Orientia_Karp_1_2 88.177 33.972 1308400 0 1038200 270170 0 0 0 0 0 10025 1077 8577 61275;61276 39111;39112 39111 427 2 VNNSSLIGLGYTQTLK Deamidation (NQ) 1707.9043 0.90431529 1616 P21796;B3KTS5;B4DEI3 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 1 0 0 By matching By MS/MS By matching By matching 1 1 1 1 63.054 63.318 2 0.0023959 27391 20181213_JW_Orientia_Karp_1_2 123.95 73.463 32226000 16770000 7922100 6634700 0 0 0 0 899220 10026 1616 8578 61277;61278;61279;61280 39113 39113 1084;1085 1 VNNSSLIGLGYTQTLK Unmodified 1706.9203 0.9202997 1616 P21796;B3KTS5;B4DEI3 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By MS/MS By matching 1 1 57.095 57.52 2 0.00047883 23452 20181213_JW_Orientia_Karp_1_3 170.74 113.39 8647300 0 0 8616300 0 0 0 31063 0 10027 1616 8578 61281;61282 39114 39114 1 VNNSSLIGLGYTQTLK 2 Deamidation (NQ) 1708.8883 0.88833087 1616 P21796;B3KTS5;B4DEI3 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 2 0 0 By matching By MS/MS 1 1 61.588 61.862 2 0.014353 26158 20181213_JW_Orientia_Karp_1_3 94.547 19.038 18423000 0 10219000 8204300 0 0 0 0 0 10028 1616 8578 61283;61284 39115 39115 1084;1085 0 VNNSSLIGLGYTQTLKPGIK Unmodified 2102.1736 0.17355427 1616 P21796;B3KTS5;B4DEI3 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 54.206 54.476 3 0.010433 22191 20181213_JW_Orientia_Karp_1_1 87.088 62.239 161500000 40687000 65734000 34654000 10675000 0 9748900 0 0 10029 1616 8579 61285;61286;61287;61288;61289;61290 39116;39117;39118 39116 3 VNNSSLIGLGYTQTLKPGIK Deamidation (NQ) 2103.1576 0.15756986 1616 P21796;B3KTS5;B4DEI3 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 1 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 2 2 1 57.954 58.199 3 0.00032752 23671 20181213_JW_Orientia_Karp_1_3 123.4 78.313 126870000 69355000 21374000 11963000 0 12517000 11089000 569050 0 10030 1616 8579 61291;61292;61293;61294;61295;61296;61297;61298;61299 39119;39120 39120 1084;1085 1 VNPALAELNLR Unmodified 1208.6877 0.68772099 237 A0A024RC87;P13489;E9PMJ3;E9PLZ3;E9PIM9;E9PMN0;E9PIK5;E9PMA9 RNH1 Ribonuclease inhibitor yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.477 54.792 2 1.9629E-05 22372 20181213_JW_Orientia_Karp_1_1 169.58 112.77 187490000 25781000 65425000 66894000 6742400 10800000 9407900 0 2440000 10031 237 8580 61300;61301;61302;61303;61304;61305;61306 39121;39122;39123;39124;39125;39126 39121 6 VNPCIFR Unmodified 904.45891 0.45890703 1236 Karp_00903 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 42.081 42.401 2 0.020952 13421 20181213_JW_Orientia_Karp_2_1 101.21 29.834 208900000 76554000 49779000 32599000 4236000 6744200 1707300 36948000 332780 10032 1236 8581 61307;61308;61309;61310;61311;61312;61313;61314 39127;39128;39129 39128 3 VNPDDPTGQSIMK Oxidation (M) 1416.6555 0.65549416 1123 Karp_00323 yes yes 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 34.273 34.595 2 6.5069E-06 10514 20181213_JW_Orientia_Karp_1_1 178.71 103.79 129780000 31924000 35562000 20948000 9717000 7716800 9222800 14685000 0 10033 1123 8582 61315;61316;61317;61318;61319;61320;61321 39130 39130 652 1 VNPDDPTGQSIMK Unmodified 1400.6606 0.66057954 1123 Karp_00323 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 41.623 41.798 2 0.032319 13759 20181213_JW_Orientia_Karp_1_3 74.611 37.42 113320000 45643000 28207000 36081000 0 3386600 0 0 0 10034 1123 8582 61322;61323;61324;61325 39131 39131 1 VNPFRPGDSEPPPAPGAQR Unmodified 1987.9864 0.98642221 1812 Q15942;H0Y2Y8;C9IZ41 ZYX Zyxin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 41.083 41.376 3 0.0015427 13237 20181213_JW_Orientia_Karp_2_3 107.73 84.207 1068300000 193030000 253760000 115380000 117740000 158760000 55036000 174650000 0 10035 1812 8583 61326;61327;61328;61329;61330;61331;61332 39132;39133;39134;39135;39136;39137;39138 39137 7 VNPINAEVLR Unmodified 1123.635 0.63495714 1365 Karp_01875 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.375 47.72 2 0.0014654 17286 20181213_JW_Orientia_Karp_1_2 118.03 68.61 451010000 103700000 108510000 77523000 36337000 25489000 35270000 1036600 63134000 10036 1365 8584 61333;61334;61335;61336;61337;61338;61339;61340 39139;39140 39139 2 VNPIQGLASK Unmodified 1025.5869 0.58694431 1592 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.846 43.19 2 0.0021688 14451 20181213_JW_Orientia_Karp_1_3 114.51 69.178 199400000 76491000 53730000 37371000 6246300 0 2502300 21953000 1105400 10037 1592 8585 61341;61342;61343;61344;61345;61346;61347 39141;39142;39143;39144;39145;39146;39147 39143 7 VNPQIFSEYIENK Unmodified 1579.7882 0.7882229 1421 Karp_02305 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.989 59.281 2 3.7343E-06 24565 20181213_JW_Orientia_Karp_1_3 193.22 128.84 303780000 72916000 68452000 67413000 25496000 34934000 32694000 1872600 0 10038 1421 8586 61348;61349;61350;61351;61352;61353;61354 39148;39149;39150;39151;39152;39153;39154;39155 39150 8 VNPTVFFDIAVDGEPLGR Unmodified 1944.9945 0.99452728 356 V9HWF5;A8K486;P62937;B2RE56;B4DM82;F8WE65;C9J5S7;E5RIZ5 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 2 2 2 74.596 74.627 2;3 1.6243E-08 34649 20181213_JW_Orientia_Karp_1_1 164.58 125.06 144430000 59362000 30502000 6730000 0 4590200 8245000 15643000 19361000 10039 356 8587 61355;61356;61357;61358;61359;61360;61361;61362;61363;61364;61365;61366 39156;39157;39158;39159;39160;39161 39156 6 VNPTVFFDITADDEPLGR Acetyl (Protein N-term) 2046.9898 0.98983583 1888 Q71V99 Peptidyl-prolyl cis-trans isomerase yes yes 1 0 0 0 By MS/MS By MS/MS By matching 1 1 1 80.949 80.915 2 8.4779E-10 37904 20181213_JW_Orientia_Karp_1_1 182.02 139.93 12498000 8292500 3764200 0 441460 0 0 0 0 10040 1888 8588 61367;61368;61369 39162;39163 39162 2 VNQAIWLLCTGAR Unmodified 1500.7871 0.78711746 99 M0QZN2;M0R0F0;Q53G25;A0A024R4Q8;M0R0R2;P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 62.6 62.783 2 0.0010072 27372 20181213_JW_Orientia_Karp_1_1 140.78 98.182 34100000 9003800 10617000 14479000 0 0 0 0 0 10041 99 8589 61370;61371;61372 39164;39165 39164 2 VNQDLIIYK Unmodified 1104.6179 0.61791009 1288 Karp_01160 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 47.69 47.991 2 0.00081704 17804 20181213_JW_Orientia_Karp_1_1 138.4 82.865 26994000 5799500 6246400 4415200 3254600 2051900 1364400 0 3862400 10042 1288 8590 61373;61374;61375;61376;61377;61378;61379 39166;39167 39166 2 VNQIGSVTESLQACK Unmodified 1632.8141 0.81412007 93 A0A024R4F1;P06733;E2DRY6;P06733-2;A4QMW8 ENO1 Alpha-enolase;Enolase yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 46.415 46.767 2 0.038093 16424 20181213_JW_Orientia_Karp_1_3 71.806 0 14429000 0 0 5273800 0 2772800 3393100 995360 1993900 10043 93 8591 61380;61381;61382;61383;61384 39168 39168 1 VNQPASFAIR Unmodified 1101.5931 0.59309232 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.693 42.986 2 0.00031413 13829 20181213_JW_Orientia_Karp_3_1 123.75 46.691 208170000 71151000 53641000 58512000 1865900 3436600 1868900 17695000 0 10044 1520 8592 61385;61386;61387;61388;61389;61390;61391;61392 39169;39170;39171;39172;39173 39172 5 VNQPASFAVQLNGAR Deamidation (NQ) 1571.8056 0.80560429 1797 Q14315-2;Q14315;Q59H94 FLNC Filamin-C yes no 0 1 0 0 By MS/MS 1 53.544 53.544 2 0.0033571 21585 20181213_JW_Orientia_Karp_1_1 122.39 85.807 0 0 0 0 0 0 0 0 0 10045 1797 8593 61393 39174 39174 1162 1 VNQPASFAVSLNGAK Deamidation (NQ) 1502.7729 0.77290718 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9 FLNA;FLJ00119 Filamin-A yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 1 1 2 53.274 53.617 2 1.3548E-27 20984 20181213_JW_Orientia_Karp_1_2 237.41 148.24 190230000 31933000 50590000 82554000 9683400 0 6909500 4728900 3829800 10046 1615 8594 61394;61395;61396;61397;61398;61399;61400;61401;61402;61403;61404 39175;39176;39177;39178 39176 1080 4 VNSSTMVAQQK Acetyl (Protein N-term);Deamidation (NQ) 1234.5864 0.58635197 1842 Q59EY4 yes yes 1 1 0 0 By MS/MS 1 19.64 19.64 2 0.039193 3937 20181213_JW_Orientia_Karp_1_1 58.433 22.815 0 0 0 0 0 0 0 0 0 10047 1842 8595 61405 39179 39179 1 VNTELMK Oxidation (M) 849.4266 0.42660385 634 B4DSE2;B4E0C7;Q53HP2;D3DQU2;O14773-2;O14773;B2R608;B4DIV8 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 1 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 23.487 23.889 2 0.026751 5278 20181213_JW_Orientia_Karp_1_2 87.754 25.04 13107000 0 6781900 789350 0 1671400 972990 1871000 1020700 10048 634 8596 61406;61407;61408;61409;61410;61411 39180;39181 39180 394 2 VNTYIENSGLK Unmodified 1236.635 0.63501672 1397 Karp_02170 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.982 40.312 2 4.5274E-07 12871 20181213_JW_Orientia_Karp_1_3 183.85 110.97 143310000 53351000 21332000 28829000 10851000 0 0 28944000 0 10049 1397 8597 61412;61413;61414;61415;61416;61417 39182;39183;39184;39185;39186;39187 39184 6 VNTYIENSGLK Deamidation (NQ) 1237.619 0.6190323 1397 Karp_02170 yes yes 0 1 0 0 By matching By MS/MS By matching 1 1 1 42.352 42.535 2 0.021543 14398 20181213_JW_Orientia_Karp_1_2 92.943 45.237 35949000 22939000 11474000 1536600 0 0 0 0 0 10050 1397 8597 61418;61419;61420 39188 39188 908 1 VNVALLK Unmodified 755.49052 0.49052473 1392 Karp_02141 yes yes 0 0 0 0 By matching By MS/MS 1 1 43.29 43.614 2 0.0020608 14038 20181213_JW_Orientia_Karp_2_1 164.78 27.336 6561800 0 0 4534500 2027300 0 0 0 0 10051 1392 8598 61421;61422 39189 39189 0 VNVDEVGGEALGR Unmodified 1313.6575 0.65754307 424 D5FZW3;E9M263;Q9BXA2;Q14484;A9YUX2;B5ANL9;Q9UP81;F8W6P5;Q8IZI0;Q8IUL9;Q3LR79;Q0Z944;B3VL31;Q9BWV6;Q9GZL9;B3VL86;D9YZU5;C8C504;Q14473;P68871;Q9H1I6;J7LKS8;B3VL12;O95408;Q9UBV6;Q4TZM4;Q9BWU5;Q6V0K9;Q52MT0;E9NGZ5;B3VL05;Q4TWB7;B3VL17;Q3Y9I8 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes no 0 0 0 0 By MS/MS 1 46.161 46.161 2 0.0014995 16680 20181213_JW_Orientia_Karp_1_1 160.22 86.334 0 0 0 0 0 0 0 0 0 10052 424 8599 61423 39190 39190 1 VNVEAPDVNLEGLGGK Unmodified 1609.8312 0.83115034 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.944 58.246 2 2.7453E-09 22141 20181213_JW_Orientia_Karp_2_1 189.99 147.64 293620000 71061000 63314000 47921000 29557000 37078000 23355000 0 21330000 10053 1782 8600 61424;61425;61426;61427;61428;61429;61430 39191;39192;39193;39194;39195;39196;39197;39198 39195 8 VNVGAGSHPNK Unmodified 1078.552 0.55195579 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 16.339 16.588 2 0.0002428 2762 20181213_JW_Orientia_Karp_1_3 153.1 102.47 12083000 5547400 2253800 2988000 551750 0 246640 495910 0 10054 1615 8601 61431;61432;61433;61434;61435;61436 39199;39200;39201;39202;39203 39201 5 VNVPVIGGHAGK Unmodified 1146.6509 0.65094155 96 Q0QF37;Q75MT9;Q6FHZ0;A0A024R4K3;P40926;P40926-2;G3XAL0;B3KTM1 MDH2 Malate dehydrogenase;Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 37.121 37.289 3 0.035249 10420 20181213_JW_Orientia_Karp_2_2 73.9 53.03 6524200 2650600 0 0 0 2322500 1551100 0 0 10055 96 8602 61437;61438;61439 39204 39204 1 VNYFIPEQK Unmodified 1136.5866 0.58660996 1392 Karp_02141 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 2 2 1 2 47.691 48.005 2 0.00079097 17663 20181213_JW_Orientia_Karp_1_1 143.37 88.762 353850000 83209000 92708000 50355000 36209000 28834000 26588000 238180 35712000 10056 1392 8603 61440;61441;61442;61443;61444;61445;61446;61447;61448;61449;61450;61451 39205;39206;39207;39208;39209;39210;39211 39205 7 VPADTEVVCAPPTAYIDFAR Unmodified 2191.062 0.061954915 1715 V9HWK1;Q53HE2;P60174-1;P60174 HEL-S-49;TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS 1 68.157 68.508 3 0.010518 24301 20181213_JW_Orientia_Karp_3_1 69.289 44.496 8091700 0 0 0 0 0 0 8091700 0 10057 1715 8604 61452 39212 39212 1 VPDGMVGLIIGR Oxidation (M) 1241.6802 0.68019277 1930 Q92945;M0QYH3;M0QXW7 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 0 By MS/MS 1 55.83 56.18 2 0.036678 22829 20181213_JW_Orientia_Karp_1_2 88.681 8.7067 0 0 0 0 0 0 0 0 0 10058 1930 8605 61453 39213 39213 1 VPDLPGVR Unmodified 851.4865 0.48650199 1092 Karp_00241 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 45.597 45.83 2 0.03566 15166 20181213_JW_Orientia_Karp_2_1 79.451 2.6045 47363000 3483500 0 0 12379000 0 31501000 0 0 10059 1092 8606 61454;61455;61456 39214;39215 39214 2 VPDVDIK Unmodified 784.43307 0.43306943 1782 Q09666;Q8N274;A8K171;P48552 AHNAK;NRIP1 Neuroblast differentiation-associated protein AHNAK;Nuclear receptor-interacting protein 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 38.636 38.966 2 0.023111 12215 20181213_JW_Orientia_Karp_1_3 98.418 21.044 131300000 116090000 0 9216000 1873900 0 1135800 2989000 0 10060 1782 8607 61457;61458;61459;61460;61461 39216;39217;39218 39216 3 VPEELALEFVSFCENMENCK Oxidation (M) 2460.0647 0.064733386 1126 Karp_00329 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 72.559 72.651 3 1.9738E-11 26761 20181213_JW_Orientia_Karp_3_1 166.77 132.3 67646000 16893000 8729900 8993000 5549200 0 0 20194000 7287400 10061 1126 8608 61462;61463;61464;61465;61466;61467 39219;39220;39221;39222;39223 39222 662 5 VPEELALEFVSFCENMENCK Unmodified 2444.0698 0.069818764 1126 Karp_00329 yes yes 0 0 0 0 By matching By MS/MS By matching 1 1 1 73.944 73.959 3 0.023913 34320 20181213_JW_Orientia_Karp_1_2 53.327 24.514 17812000 7662400 3773400 6376100 0 0 0 0 0 10062 1126 8608 61468;61469;61470 39224 39224 1 VPEELALEFVSFCENMENCKK Oxidation (M);Deamidation (NQ) 2589.1437 0.14371199 1126 Karp_00329 yes yes 0 1 1 1 By MS/MS 1 65.217 65.368 3 0.026619 25780 20181213_JW_Orientia_Karp_2_3 58.073 41.356 0 0 0 0 0 0 0 0 0 10063 1126 8609 61471 39225 39225 515 662 1 VPEELALEFVSFCENMENCKK Oxidation (M) 2588.1597 0.1596964 1126 Karp_00329 yes yes 0 0 1 1 By matching By MS/MS 1 1 65.114 65.395 3 0.0023672 25006 20181213_JW_Orientia_Karp_3_2 88.781 68.044 6889500 0 0 0 0 4824000 0 0 2065500 10064 1126 8609 61472;61473 39226 39226 662 1 VPELFANR Unmodified 944.50797 0.50796571 763 C9JRH2;C9JMJ4;C9J3R0;C9JQZ4;C9JW69;Q5T081;P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 0 By matching By MS/MS 1 1 47.07 47.245 2 0.025926 16973 20181213_JW_Orientia_Karp_1_2 84.916 50.743 20468000 9936200 10532000 0 0 0 0 0 0 10065 763 8610 61474;61475 39227 39227 1 VPENPPSMVFK Unmodified 1243.6271 0.62709457 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9;Q59FA5;E9PJ32 TAGLN Transgelin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 49.127 49.394 2 0.00048334 18147 20181213_JW_Orientia_Karp_1_3 142 81.023 114100000 26081000 39238000 32030000 0 7432700 9259200 53466 0 10066 1761 8611 61476;61477;61478;61479;61480;61481;61482;61483 39228;39229;39230;39231;39232;39233 39230 6 VPENPPSMVFK Oxidation (M) 1259.622 0.62200919 1761 Q5U0D2;Q01995;Q6FI52;Q53GC9;H0YCU9;Q59FA5;E9PJ32 TAGLN Transgelin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 41.694 42.081 2 0.0041869 13835 20181213_JW_Orientia_Karp_1_3 105.2 54.003 81650000 0 0 31269000 9178200 0 18114000 23088000 0 10067 1761 8611 61484;61485;61486;61487;61488;61489;61490 39234;39235;39236;39237;39238;39239 39237 1380 6 VPENTMHAMQQK 2 Oxidation (M) 1444.6439 0.64388362 133 A0A024R694;P12814;P12814-3;P12814-2;P12814-4;H9KV75;B7Z565;Q86TX4 ACTN1 Alpha-actinin-1 yes no 0 0 2 0 By matching By matching By MS/MS By matching 1 1 1 1 15.029 15.254 3 0.035214 2297 20181213_JW_Orientia_Karp_1_3 62.799 28.045 10057000 3471400 3035600 2747400 802140 0 0 0 0 10068 133 8612 61491;61492;61493;61494 39240 39240 1 VPEVPTAPATDAAPK Unmodified 1462.7668 0.76675917 168 K7EJ51;Q1WWK5;A0A024R8Q0;A0A024R8V0;Q9UHD8-3;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ERG1 SEPT9 Septin-9 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 45.276 45.606 2 0.042408 15965 20181213_JW_Orientia_Karp_1_2 69.864 33.439 38235000 14657000 6779500 13743000 1619900 0 0 1436600 0 10069 168 8613 61495;61496;61497;61498;61499 39241 39241 1 VPEWVDTVK Unmodified 1071.5601 0.56006086 433 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 RPS19 40S ribosomal protein S19 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.763 49.109 2 0.00079823 18087 20181213_JW_Orientia_Karp_1_2 141.2 89.409 522230000 100390000 140000000 97464000 71899000 27018000 43315000 213770 41934000 10070 433 8614 61500;61501;61502;61503;61504;61505;61506;61507 39242;39243;39244;39245;39246;39247;39248 39243 7 VPFDAATLHTSTAMAAQHGMDDDGTGQK Unmodified 2872.2756 0.27560587 716 B7Z2X4;B7Z992;P06396-2;B7Z9A0;B7Z6N2;P06396-4;P06396-3;P06396;B7Z4U6;Q5T0H9;B3KS49 GSN Gelsolin yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 47.612 47.912 4 0.031916 17701 20181213_JW_Orientia_Karp_1_1 42.557 27.065 69566000 12307000 24404000 32341000 0 0 0 513910 0 10071 716 8615 61508;61509;61510;61511 39249 39249 1 VPFGVVR Unmodified 772.45956 0.45955895 1178 Karp_00644 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 43.565 43.827 2 0.02877 14851 20181213_JW_Orientia_Karp_1_2 91.093 55.988 392260000 4475100 365440000 0 313110 0 22029000 0 0 10072 1178 8616 61512;61513;61514;61515;61516 39250;39251;39252 39250 3 VPFSLLR Unmodified 830.50142 0.50142377 1553 V9HW43;P04792;B4DL87;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.808 55.124 2 0.011563 20421 20181213_JW_Orientia_Karp_2_3 119.56 36.27 668360000 186290000 63281000 130020000 72650000 47764000 168190000 0 174140 10073 1553 8617 61517;61518;61519;61520;61521;61522;61523 39253;39254;39255;39256;39257;39258 39258 6 VPGTSTSATLTGLTR Unmodified 1460.7835 0.78347187 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;A6YID7;Q6PJE5;B4DN21;B4DTH2 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 46.651 46.923 2 2.4432E-19 16094 20181213_JW_Orientia_Karp_2_3 215.77 169.36 1103300000 391610000 266830000 220340000 65793000 39300000 58291000 0 61114000 10074 85 8618 61524;61525;61526;61527;61528;61529;61530 39259;39260;39261;39262;39263;39264;39265 39264 5 VPGVIYK Unmodified 774.46398 0.46397563 1100 Karp_00268 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 37.213 37.547 2 0.012123 11587 20181213_JW_Orientia_Karp_1_2 126.05 71.259 922690000 689410000 118550000 40716000 24717000 0 316000 48981000 0 10075 1100 8619 61531;61532;61533;61534;61535;61536;61537 39266;39267;39268;39269;39270;39271 39267 6 VPHIPSK Unmodified 776.45447 0.45447358 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 24.037 24.367 2 0.02652 5432 20181213_JW_Orientia_Karp_1_2 94.006 54.985 184040000 21193000 65227000 33071000 27224000 0 299080 36906000 119670 10076 1375 8620 61538;61539;61540;61541;61542;61543;61544;61545 39272;39273;39274;39275 39273 4 VPILQVATISVSDTK Unmodified 1569.8978 0.89777334 1456 Karp_02593 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 63.597 63.83 2 2.9667E-27 27366 20181213_JW_Orientia_Karp_1_3 226.42 170.4 258320000 87013000 79010000 43711000 5225600 22506000 11675000 590290 8587700 10077 1456 8621 61546;61547;61548;61549;61550;61551;61552;61553 39276;39277;39278;39279;39280;39281;39282;39283 39278 8 VPILVAINK Unmodified 965.62735 0.62735256 1366 Karp_01876 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.207 54.474 2 0.00048186 19905 20181213_JW_Orientia_Karp_2_1 157.99 105.35 599910000 37213000 32264000 384080000 31479000 32043000 82833000 0 0 10078 1366 8622 61554;61555;61556;61557;61558;61559 39284;39285;39286;39287;39288;39289 39287 6 VPIPWVSGTSASTPVFGGILSLINEHR Unmodified 2833.5127 0.51266374 634 B4DSE2;B4E0C7;Q53HP2;D3DQU2;O14773-2;O14773;B2R608;B4DIV8;B4DE89 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 75.486 75.506 3 3.7886E-14 34971 20181213_JW_Orientia_Karp_1_3 154.87 133.86 125390000 25149000 26620000 32895000 6153500 8634000 9987100 12172000 3783100 10079 634 8623 61560;61561;61562;61563;61564;61565;61566;61567 39290;39291;39292;39293;39294;39295;39296;39297 39292 8 VPISFEGK Unmodified 875.47527 0.4752686 1100 Karp_00268 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 41.819 42.164 2 0.030313 14055 20181213_JW_Orientia_Karp_1_2 82.452 44.807 621420000 124680000 169540000 106880000 41586000 0 80221000 96167000 2340100 10080 1100 8624 61568;61569;61570;61571;61572;61573;61574 39298;39299 39298 2 VPKPEPIPEPK Unmodified 1229.702 0.70197407 425 B4DED5;M0R088;A9Z1X7;E9PCT1;B7Z7U0;Q8IYB3-2;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 34.692 34.975 3 0.020079 10809 20181213_JW_Orientia_Karp_1_1 85.813 59.106 10780000 5454900 0 3769000 0 0 0 1555600 0 10081 425 8625 61575;61576;61577;61578 39300;39301;39302 39300 3 VPLASQGLGPGSTVLLVVDK Unmodified 1949.1197 0.11972779 1558 P05161 ISG15 Ubiquitin-like protein ISG15 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 69.811 69.916 2;3 9.6956E-12 28217 20181213_JW_Orientia_Karp_2_3 166.21 157.16 378250000 146400000 89344000 87390000 575790 3935900 32184000 18420000 0 10082 1558 8626 61579;61580;61581;61582;61583;61584;61585;61586;61587;61588;61589 39303;39304;39305;39306;39307;39308;39309 39308 7 VPLDEALQR Unmodified 1039.5662 0.56620887 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149;D3DWL0;Q96IE3 PLEC;PLEC1 Plectin yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 44.091 44.361 2 0.008205 15141 20181213_JW_Orientia_Karp_1_3 97.635 57.367 65499000 31845000 19736000 10953000 0 665880 0 2299300 0 10083 1803 8627 61590;61591;61592;61593;61594 39310 39310 1 VPLIAILGK Unmodified 922.62154 0.62153891 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 63.949 64.151 2 0.00081599 28346 20181213_JW_Orientia_Karp_1_1 135.87 103.39 34401000 17082000 9718600 0 0 0 4966200 0 2634200 10084 1376 8628 61595;61596;61597;61598 39311;39312;39313 39311 3 VPLNNNELEK Unmodified 1168.6088 0.60880197 1178 Karp_00644 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.121 35.494 2 3.6967E-05 10439 20181213_JW_Orientia_Karp_1_3 160.82 99.912 195660000 53625000 46182000 37743000 7074700 15761000 0 22244000 13027000 10085 1178 8629 61599;61600;61601;61602;61603;61604;61605;61606 39314;39315;39316;39317;39318;39319;39320;39321 39316 8 VPNGMVGLIIGR Oxidation (M);Deamidation (NQ) 1241.6802 0.68019277 645 B4DV73 yes yes 0 1 1 0 By MS/MS 1 55.526 56.177 2 0.0076009 19597 20181213_JW_Orientia_Karp_3_1 107.21 14.667 4639000 0 0 0 0 0 0 4639000 0 10086 645 8630 61607 39322 39322 223 400 1 VPPAINQFTQALDR Unmodified 1568.8311 0.83109076 1736 P62424;Q5T8U3 RPL7A 60S ribosomal protein L7a yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 61.197 61.49 2 0.0041934 21370 20181213_JW_Orientia_Karp_3_1 113.07 76.541 95874000 30144000 25767000 25048000 2647600 5809800 4027400 2429300 0 10087 1736 8631 61608;61609;61610;61611;61612;61613;61614 39323;39324;39325;39326 39326 4 VPPFTFHVK Unmodified 1070.5913 0.59130141 1868 Q6NZI2;B4DPZ5;B4DNU9;B3KRY5;Q6NZI2-2;Q6NZI2-3 PTRF Polymerase I and transcript release factor yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 45.669 46.069 3 0.015144 16022 20181213_JW_Orientia_Karp_1_3 91.265 55.357 26255000 0 23833000 0 2421400 0 0 0 0 10088 1868 8632 61615;61616;61617 39327;39328 39327 2 VPPVQVSPLIK Unmodified 1175.7278 0.72779489 1712 P56385 ATP5I ATP synthase subunit e, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.881 54.239 2 0.00034962 21580 20181213_JW_Orientia_Karp_1_2 147.75 92.204 166140000 40456000 45167000 31141000 13851000 9961300 19643000 1444300 4477900 10089 1712 8633 61618;61619;61620;61621;61622;61623;61624;61625 39329;39330;39331;39332;39333;39334 39330 6 VPQTFTVDCSQAGR Unmodified 1564.7304 0.73039044 1797 Q14315-2;Q14315;Q59H94 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 42.938 43.276 2 0.015636 14506 20181213_JW_Orientia_Karp_1_3 89.301 61.529 19165000 0 6450100 7954100 0 591690 0 4169300 0 10090 1797 8634 61626;61627;61628;61629 39335;39336;39337 39336 3 VPQVSTPTLVEVSR Unmodified 1510.8355 0.83550744 792;620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;B7WNR0;B4DPR2;Q8IUK7;C9JKR2;H0YA55;D6RHD5;P02768-2;CON__P02769 ALB Serum albumin no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 3 3 2 3 53.312 53.668 2;3 1.0421E-11 21940 20181213_JW_Orientia_Karp_1_1 201.38 160.3 6906900000 1306400000 614310000 879440000 1054400000 1211700000 1201800000 99718000 539070000 + 10091 620;792 8635 61630;61631;61632;61633;61634;61635;61636;61637;61638;61639;61640;61641;61642;61643;61644;61645;61646;61647;61648;61649;61650;61651 39338;39339;39340;39341;39342;39343;39344;39345;39346;39347;39348;39349 39338 12 VPSLVGSFIR Unmodified 1073.6233 0.62332982 479 Q5TA02;V9HWG9;B2R983;P78417-3;P78417 GSTO1;HEL-S-21 Glutathione S-transferase omega-1 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 60.463 60.723 2 0.0027495 26223 20181213_JW_Orientia_Karp_1_1 111.61 60.271 80491000 43185000 5270300 15346000 0 6990700 8795700 0 903070 10092 479 8636 61652;61653;61654;61655;61656;61657 39350;39351;39352 39350 3 VPSNIQVTVPK Unmodified 1180.6816 0.68157298 1227 Karp_00894 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.3 45.593 2 1.2253E-05 14890 20181213_JW_Orientia_Karp_2_2 173.64 112.81 243980000 72011000 65878000 67633000 13617000 13333000 9615600 1897100 0 10093 1227 8637 61658;61659;61660;61661;61662;61663;61664 39353;39354;39355;39356;39357;39358;39359 39357 7 VPSQLLNTELTER Unmodified 1498.7991 0.79912193 1927 Q92626 PXDN Peroxidasin homolog yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.32 52.665 2 8.104E-05 18350 20181213_JW_Orientia_Karp_3_1 165.35 106.76 108850000 33632000 27197000 25295000 4070100 5283200 4173200 7711400 1486900 10094 1927 8638 61665;61666;61667;61668;61669;61670;61671;61672 39360;39361;39362;39363 39362 4 VPTAHLEDVLPLAEDITTILSK Unmodified 2374.2995 0.29954265 785 CON__ENSEMBL:ENSBTAP00000018229 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 75.367 75.382 3 1.5303E-05 28151 20181213_JW_Orientia_Karp_3_1 124.2 81.038 49071000 6554500 0 12559000 2664500 8143100 6748300 11869000 533100 + 10095 785 8639 61673;61674;61675;61676;61677;61678;61679 39364;39365;39366;39367;39368 39368 5 VPTANVSVVDLTCR Unmodified 1529.7872 0.78717704 1551 V9HVZ4;Q2TSD0;P04406-2;P04406;Q0QET7;E7EUT5;A4UCT1;Q5ZEY3 HEL-S-162eP;GAPDH;GAPD Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 54.644 55.001 2 7.6086E-08 19110 20181213_JW_Orientia_Karp_3_2 221.09 176.77 377110000 66403000 60487000 127570000 33535000 41439000 35470000 456400 11748000 10096 1551 8640 61680;61681;61682;61683;61684;61685;61686;61687 39369;39370;39371;39372;39373;39374;39375 39375 7 VPTSNVSLIDFTFFSHK Unmodified 1937.9887 0.98871362 1432 Karp_02389 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 69.651 69.761 3 0.00045724 31773 20181213_JW_Orientia_Karp_1_1 156.06 129.28 50703000 17964000 0 11493000 0 6322300 3871100 11053000 0 10097 1432 8641 61688;61689;61690;61691;61692 39376;39377;39378;39379 39376 4 VPVHDVTDASK Unmodified 1166.5932 0.5931519 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 1 24.891 25.273 3 0.013217 5922 20181213_JW_Orientia_Karp_1_2 124.39 77.158 34926000 8812200 0 4489800 0 0 1885100 6389600 13349000 10098 1615 8642 61693;61694;61695;61696;61697;61698;61699 39380;39381;39382;39383;39384 39381 5 VPVVQAYAFGK Unmodified 1177.6495 0.64954457 487 Q6NZX3;Q53Z63;B2RBH2;P21589-2;P21589;H0Y7R7 NT5E 5'-nucleotidase yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 51.929 52.179 2 0.035288 20626 20181213_JW_Orientia_Karp_1_1 76.478 37.456 44754000 14211000 6950100 11186000 5688700 2338100 4379900 0 0 10099 487 8643 61700;61701;61702;61703;61704;61705 39385 39385 1 VPWFDQQNGR Deamidation (NQ) 1246.5731 0.57308516 1926 Q92522 H1FX Histone H1x yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 54.197 54.472 2 0.017336 21506 20181213_JW_Orientia_Karp_1_3 94.309 56.801 57440000 24216000 19389000 10804000 3031300 0 0 0 0 10100 1926 8644 61706;61707;61708;61709 39386;39387 39387 1203 2 VPYSGMTGAQVIQMLAQNYR Oxidation (M);3 Deamidation (NQ) 2245.0395 0.039504913 471 B2R8C2 Non-specific protein-tyrosine kinase yes yes 0 3 1 0 By matching By MS/MS By matching 1 1 1 52.295 52.732 3 0.03 18962 20181213_JW_Orientia_Karp_2_2 48.677 14.4 8956800 0 0 0 4215300 4188100 0 0 553370 10101 471 8645 61710;61711;61712 39388 39388 179;1461;1462 0 VQAENFYIIHK Unmodified 1360.7139 0.71393574 1397 Karp_02170 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 44.05 44.333 3 0.0016552 15087 20181213_JW_Orientia_Karp_1_3 124.39 88.082 75009000 38196000 0 33343000 0 0 0 3468700 0 10102 1397 8646 61713;61714;61715;61716 39389;39390;39391;39392;39393 39392 5 VQALEEANNDLENK Unmodified 1585.7584 0.75837933 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.496 40.816 2 5.5207E-59 12757 20181213_JW_Orientia_Karp_3_1 280.57 177.26 739140000 97591000 94979000 67897000 161140000 97839000 70713000 92889000 56083000 + 10103 1653 8647 61717;61718;61719;61720;61721;61722;61723;61724 39394;39395;39396;39397;39398;39399;39400;39401;39402;39403;39404 39403 11 VQALEEANNDLENK Deamidation (NQ) 1586.7424 0.74239492 1653 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 1 1 2 41.823 42.158 2 2.0387E-05 13658 20181213_JW_Orientia_Karp_1_2 175.88 132.38 70071000 8807600 13359000 11071000 7404500 8956400 1295100 19176000 0 + 10104 1653 8647 61725;61726;61727;61728;61729;61730;61731;61732;61733;61734 39405;39406;39407;39408;39409;39410;39411 39405 1106;1107 7 VQAMQISSEK Oxidation (M) 1135.5543 0.55432356 826 D3DND1;Q9UKY7-2;Q9UKY7;H0Y8K3 CDV3 Protein CDV3 homolog yes no 0 0 1 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 23.515 23.855 2 0.026098 5193 20181213_JW_Orientia_Karp_3_1 77.192 34.109 4079100 0 0 702270 1026200 1103100 467410 780110 0 10105 826 8648 61735;61736;61737;61738;61739 39412;39413 39413 477 2 VQANLGAPDINIEGLDAK Unmodified 1836.9581 0.95814177 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 62.303 62.611 2 6.1321E-17 27006 20181213_JW_Orientia_Karp_1_2 204.23 130.96 213730000 65531000 44937000 57273000 5763700 17383000 12477000 103750 10262000 10106 1782 8649 61740;61741;61742;61743;61744;61745;61746;61747 39414;39415;39416;39417;39418;39419 39415 6 VQAQGPGLK Unmodified 896.50797 0.50796571 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 26.187 26.641 2 0.0011201 5305 20181213_JW_Orientia_Karp_3_2 130.04 24.839 31236000 0 0 26136000 0 2205700 0 0 2894000 10107 1520 8650 61748;61749;61750 39420 39420 1 VQAQVIQETIVPK Unmodified 1451.8348 0.83477916 46 B4E091;A0A024R1K8;Q15459 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 50.553 50.886 2 5.9514E-08 19742 20181213_JW_Orientia_Karp_1_1 193.22 120.37 60128000 16264000 21967000 12917000 2260500 0 2736100 3984700 0 10108 46 8651 61751;61752;61753;61754;61755;61756 39421;39422;39423;39424 39421 4 VQASLAANTFTITGHAETK Unmodified 1959.0062 0.0061545955 1610 P20290-2;P20290;H0Y9Y1;D6RDG3 BTF3 Transcription factor BTF3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.744 47.064 3 0.00036073 16610 20181213_JW_Orientia_Karp_1_3 112.91 73.39 278540000 103600000 52398000 38784000 16525000 11312000 20547000 4486200 30891000 10109 1610 8652 61757;61758;61759;61760;61761;61762;61763;61764 39425;39426;39427;39428;39429;39430;39431;39432;39433;39434 39427 10 VQDDEVGDGTTSVTVLAAELLR Unmodified 2287.1543 0.15433498 923 F8VQ14;F5GWF6;V9HW96;P78371;P78371-2 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 75.231 75.247 2;3 3.4118E-30 34767 20181213_JW_Orientia_Karp_1_3 222.11 165.07 107560000 40497000 20691000 35763000 0 0 1391300 9215200 0 10110 923 8653 61765;61766;61767;61768;61769;61770;61771;61772;61773 39435;39436;39437;39438 39437 4 VQDTMTLAISQGSLR Oxidation (M) 1634.8298 0.82977013 1133 Karp_00399 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 47.623 47.982 2 4.0917E-13 16405 20181213_JW_Orientia_Karp_2_1 198.85 138.74 55887000 11095000 14235000 13262000 6895100 3810700 0 1161700 5427200 10111 1133 8654 61774;61775;61776;61777;61778;61779;61780 39439;39440;39441;39442;39443;39444 39442 667 6 VQDTMTLAISQGSLR Unmodified 1618.8349 0.83485551 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 55.404 55.671 2 1.3574E-08 22566 20181213_JW_Orientia_Karp_1_2 183.06 118.84 41694000 0 10554000 28883000 0 2256700 0 0 0 10112 1133 8654 61781;61782;61783 39445;39446 39445 2 VQEAPLVTEVK Unmodified 1211.6762 0.67615325 1444 Karp_02422 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 44.132 44.458 2 0.0045725 15195 20181213_JW_Orientia_Karp_1_3 107.11 61.434 156820000 52891000 51190000 30884000 0 0 7336500 13893000 623030 10113 1444 8655 61784;61785;61786;61787;61788;61789 39447;39448;39449;39450;39451;39452 39449 5 VQEAVESMVK Oxidation (M) 1134.5591 0.55907458 762 C9J2Y4;E7EQY1;Q96C01 FAM136A Protein FAM136A yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 27.952 28.302 2 0.0082794 6641 20181213_JW_Orientia_Karp_2_1 93.442 23.186 4796300 0 0 0 3400200 0 1396100 0 0 10114 762 8656 61790;61791;61792 39453;39454;39455;39456 39453 447 4 VQELGNGISGLFK Deamidation (NQ) 1361.7191 0.7190807 1066 Karp_00014 yes yes 0 1 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 65.054 65.216 2 0.026166 28186 20181213_JW_Orientia_Karp_1_3 92.247 45.785 43218000 15300000 0 13189000 0 7712400 5487000 0 1529700 10115 1066 8657 61793;61794;61795;61796;61797 39457 39457 403 1 VQEQVHTLLSQDQAQAAR Unmodified 2021.029 0.029015303 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.959 39.276 3 2.3946E-42 12354 20181213_JW_Orientia_Karp_1_3 244.18 201.66 557260000 84380000 184700000 177390000 41434000 13841000 0 55510000 0 10116 224 8658 61798;61799;61800;61801;61802;61803 39458;39459;39460;39461;39462;39463 39460 6 VQEQVHTLLSQDQAQAAR Deamidation (NQ) 2022.013 0.013030887 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1 CKAP4 Cytoskeleton-associated protein 4 yes no 0 1 0 0 By MS/MS 1 39.11 39.361 3 0.0057403 12138 20181213_JW_Orientia_Karp_2_3 110.56 77.87 1396200 0 0 0 0 0 1396200 0 0 10117 224 8658 61804 39464 39464 1332 0 VQGINLSMIESTFR Unmodified 1593.8185 0.81847717 1127 Karp_00330 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 69.736 69.861 2 0.00095266 31275 20181213_JW_Orientia_Karp_1_3 136.7 100.27 27569000 12346000 0 9346800 0 2472300 0 3403800 0 10118 1127 8659 61805;61806;61807;61808 39465;39466 39466 2 VQGLEQAVDNFEGK Unmodified 1532.7471 0.74708636 1535 Q53GY1;O95817 BAG3 BAG family molecular chaperone regulator 3 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 53.762 54.025 2 0.015532 19661 20181213_JW_Orientia_Karp_2_2 106.79 72.91 29709000 17350000 0 0 4056200 4481200 3822200 0 0 10119 1535 8660 61809;61810;61811;61812 39467;39468 39467 2 VQIEHISSLIK Unmodified 1265.7343 0.73433683 1489 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching 2 1 1 1 46.22 46.395 3 0.0081886 16940 20181213_JW_Orientia_Karp_1_1 95.483 52.765 30070000 8162200 18216000 2951500 0 739860 0 0 0 10120 1489 8661 61813;61814;61815;61816;61817 39469;39470 39469 2 VQISLVQYSR Unmodified 1191.6612 0.66117189 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 50.691 50.874 2 0.02391 19750 20181213_JW_Orientia_Karp_1_1 94.363 47.176 12851000 2614500 6826300 3410500 0 0 0 0 0 10121 852 8662 61818;61819;61820 39471 39471 1 VQISPDSGGLPER Unmodified 1353.6888 0.6888432 1930;645 B4DV73;Q92945;M0QYH3;M0QXW7 KHSRP Far upstream element-binding protein 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 43.797 43.979 2 0.012107 15088 20181213_JW_Orientia_Karp_1_2 107.97 59.172 0 0 0 0 0 0 0 0 0 10122 645;1930 8663 61821;61822;61823 39472;39473;39474 39473 3 VQIWFQNERSCQLR 3 Deamidation (NQ) 1865.873 0.87303193 1511 Q96PT4-2;Q96PT3-2;O43812;Q96PT4;Q96PT3 DUX3;DUX5;DUX1 Putative double homeobox protein 3;Double homeobox protein 5;Double homeobox protein 1 yes no 0 3 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 23.584 23.864 4 0.039018 4194 20181213_JW_Orientia_Karp_2_2 43.03 12.858 58144000 0 38047000 1054800 9899000 1681300 7461700 0 0 10123 1511 8664 61824;61825;61826;61827;61828 39475 39475 1906;1907 1 VQIYHNPTANSFR Unmodified 1545.7688 0.76882486 37 A0A024R0V4;P50552;K7ENR7;K7ENL7 VASP Vasodilator-stimulated phosphoprotein yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 37.211 37.548 3 0.018393 11113 20181213_JW_Orientia_Karp_3_1 115.34 77.729 55329000 0 29596000 21090000 532750 4109700 0 0 0 10124 37 8665 61829;61830;61831;61832;61833 39476;39477 39477 2 VQLMRQMKEDAEK 2 Oxidation (M);2 Deamidation (NQ) 1638.7593 0.75930731 663 B4DYE2;Q59HG1;O95239-2;O95239;Q2VIQ3;Q6PKB2 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 2 2 2 By MS/MS 1 72.19 72.288 2 0.036871 32788 20181213_JW_Orientia_Karp_1_3 48.44 7.3599 0 0 0 0 0 0 0 0 0 10125 663 8666 61834 39478 39478 1562;1563 1 VQMDLEAQIEK Unmodified 1302.649 0.64895222 1268 Karp_01076 yes yes 0 0 0 0 By MS/MS 1 49.896 50.047 2 2.0237E-07 17476 20181213_JW_Orientia_Karp_2_2 190.26 116.09 20262000 0 0 0 0 20262000 0 0 0 10126 1268 8667 61835 39479 39479 1 VQNATLAVANITNADSATR Unmodified 1928.9916 0.99156716 160 B4E2V5;B4DZK8;A0A024R882;P27105 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 51.661 52.061 2 0.00025813 20093 20181213_JW_Orientia_Karp_1_2 126.07 95.73 14098000 0 6810500 5757700 0 0 0 1529900 0 10127 160 8668 61836;61837;61838 39480;39481 39480 2 VQNHLPASGPTQPPVVSSTNEGSPSPPEPTGK Unmodified 3192.5687 0.56873465 14 H3BQC4;A0A024QZE7;O43294-2;O43294 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein yes no 0 0 0 0 By MS/MS 1 45.207 45.858 3 0.024195 15205 20181213_JW_Orientia_Karp_3_1 56.963 34.882 0 0 0 0 0 0 0 0 0 10128 14 8669 61839 39482 39482 1 VQQLEEQVQSLTK Unmodified 1528.8097 0.80968662 2019 Q9Y6C2 EMILIN1 EMILIN-1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 47.808 48.173 2 0.0046777 17943 20181213_JW_Orientia_Karp_1_1 112.02 65.294 12539000 5194600 0 4378100 0 0 0 401180 2564800 10129 2019 8670 61840;61841;61842;61843;61844 39483;39484;39485;39486 39483 4 VQQLVPK Unmodified 810.49634 0.49633839 1509 O43707;O43707-2;Q96BG6;F5GXS2;O43707-3;H7C144 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 30.968 31.318 2 3.871E-06 7350 20181213_JW_Orientia_Karp_3_2 187.93 63.338 136620000 31963000 51264000 27875000 4414100 236410 1153200 19709000 0 10130 1509 8671 61845;61846;61847;61848;61849;61850;61851;61852;61853 39487;39488;39489;39490;39491;39492;39493;39494;39495 39495 9 VQQQNENSFGVAASSGPKPEK Deamidation (NQ) 2202.0553 0.055289633 1115 Karp_00303 yes yes 0 1 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 35.107 35.39 3 0.024535 10361 20181213_JW_Orientia_Karp_1_3 78.78 43.253 130180000 15905000 68600000 17184000 0 7094400 3760400 17631000 0 10131 1115 8672 61854;61855;61856;61857;61858;61859 39496;39497;39498;39499 39497 490;491 4 VQQQNENSFGVAASSGPKPEK Unmodified 2201.0713 0.071274048 1115 Karp_00303 yes yes 0 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 33.491 33.884 3 0.011072 8796 20181213_JW_Orientia_Karp_2_2 96.455 66.645 113650000 34541000 18038000 23041000 20986000 0 0 13039000 4009000 10132 1115 8672 61860;61861;61862;61863;61864;61865;61866 39500;39501 39500 2 VQQTVQDLFGR Unmodified 1289.6728 0.67279921 721 B7Z4V2;V9HW84;Q8N1C8;P38646;B7Z1V7;B7Z4T3;A1XP52 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 51.363 51.613 2 1.9009E-07 19894 20181213_JW_Orientia_Karp_1_2 190.57 138.09 217400000 64042000 68413000 49569000 18962000 1091900 15318000 0 0 10133 721 8673 61867;61868;61869;61870;61871;61872;61873 39502;39503;39504;39505;39506 39503 5 VQQVQPAMQAVIR Unmodified 1466.8028 0.80276752 158 A0A024R872;Q96TA1-2;Q96TA1 C9orf88;FAM129B Niban-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 47.504 47.778 2 0.0075698 17638 20181213_JW_Orientia_Karp_1_1 116.3 47.57 10471000 0 5212600 5258000 0 0 0 0 0 10134 158 8674 61874;61875;61876 39507;39508 39507 2 VQSLQATFGTFESILR Unmodified 1795.9468 0.9468488 224 A0A024RBH2;Q07065;Q8TB01;Q6NWZ1;B3KVX6 CKAP4 Cytoskeleton-associated protein 4 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 73.111 73.193 2 7.0337E-09 33468 20181213_JW_Orientia_Karp_1_3 181.67 137.06 125190000 18139000 30469000 39925000 0 0 0 31211000 5447400 10135 224 8675 61877;61878;61879;61880;61881 39509;39510;39511 39510 3 VQTLSNQPLLK Unmodified 1239.7187 0.71868677 529 B3KTJ9;Q8N163-2;Q8N163;H0YC69;E5RGU7;E5RFJ3;H0YC58 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 44.358 44.632 2 0.0012519 15504 20181213_JW_Orientia_Karp_1_2 125.71 63.249 14681000 0 10078000 4602900 0 0 0 0 0 10136 529 8676 61882;61883 39512;39513 39512 2 VQTPEVDVK Unmodified 1013.5393 0.53932542 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 37.08 37.37 2 0.02302 11431 20181213_JW_Orientia_Karp_1_3 82.287 19.573 32074000 15355000 9519200 5137100 0 1639200 0 423930 0 10137 1782 8677 61884;61885;61886;61887;61888 39514 39514 1 VQVAALQASPPLDQDDR Unmodified 1821.9221 0.92209062 64 B7Z954;A0A024R233;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-7;B7Z2R3;A0A024R225;Q9UDY2-5;Q9UDY2-4;Q9UDY2-2;U3KQJ2;B1AN86 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 53.809 54.209 2 0.037125 21561 20181213_JW_Orientia_Karp_1_2 92.906 68.053 7934000 0 1881600 5837300 0 0 0 215110 0 10138 64 8678 61889;61890;61891 39515 39515 1 VQVALEELQDLK Unmodified 1383.7609 0.76094551 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 59.676 59.876 2 0.03233 25675 20181213_JW_Orientia_Karp_1_1 98.754 60.001 23101000 7638200 6281900 7303300 0 0 1877400 0 0 10139 1796 8679 61892;61893;61894;61895 39516 39516 1 VQVQDNEGCPVEALVK Deamidation (NQ) 1784.8615 0.86146419 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 51.762 52.012 2 1.4642E-13 20312 20181213_JW_Orientia_Karp_1_1 206.46 142.24 1131600000 337300000 267710000 238370000 285230000 2968100 0 0 0 10140 1615 8680 61896;61897;61898;61899;61900 39517 39517 1081 1 VQVQDNEGCPVEALVK Unmodified 1783.8774 0.87744861 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 51.417 51.817 2 2.3321E-13 19857 20181213_JW_Orientia_Karp_1_3 217.46 159.33 107890000 0 51317000 32560000 8277900 0 3779500 11955000 0 10141 1615 8680 61901;61902;61903;61904;61905;61906 39518;39519;39520;39521;39522;39523 39519 6 VQYEAVDNNPNIK Unmodified 1502.7365 0.73652168 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.328 38.645 2 6.3854E-35 12235 20181213_JW_Orientia_Karp_1_2 254.07 177.97 1277900000 285010000 386470000 367390000 4400800 36299000 0 198350000 0 10142 1219 8681 61907;61908;61909;61910;61911;61912 39524;39525;39526;39527;39528;39529;39530;39531 39525 8 VQYEAVDNNPNIK Deamidation (NQ) 1503.7205 0.72053726 1219 Karp_00886 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 40.326 40.658 2 4.0123E-07 13067 20181213_JW_Orientia_Karp_1_3 187.58 141.17 21622000 0 6370400 10934000 2251200 654830 0 0 1411500 10143 1219 8681 61913;61914;61915;61916;61917 39532;39533 39532 625 2 VRDMFEQAK Oxidation (M) 1138.5441 0.54409322 1458 Karp_02603 yes yes 0 0 1 1 By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 2 1 1 1 1 1 21.497 21.775 3 0.0098953 4408 20181213_JW_Orientia_Karp_1_2 96.665 64.631 6008400 578960 2356300 861820 695330 356760 904980 254300 0 10144 1458 8682 61918;61919;61920;61921;61922;61923;61924;61925 39534;39535 39534 1077 2 VREQLGPVTQEFWDNLEK Unmodified 2187.096 0.096032235 800 CON__P15497 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 61.011 61.298 3 2.5835E-09 22552 20181213_JW_Orientia_Karp_3_2 176.44 130.1 135170000 39462000 23299000 21573000 5159700 22721000 12258000 0 10696000 + 10145 800 8683 61926;61927;61928;61929;61930;61931;61932 39536;39537;39538 39538 3 VRFLEQQNK Unmodified 1160.6302 0.63020611 1571;799;341;679;811;793;805;796;818 CON__P12035;P12035;CON__Q01546;CON__P07744;F8VRG4;U3KPR1;B4DIR1;K7ELP4;K7EJU1;K7EKH9;A0JNT2;CON__Q61726;CON__O43790;B4DN72;A8K872;CON__Q6NT21;CON__P78385;CON__Q14533;CON__P78386;Q8IWY7;O43790;P78385;Q14533;P78386;V9HWE1;P08670;B0YJC4;Q53HU8;B4E192;B4DJW0;P14136-3;P14136;P14136-2;CON__Q3KNV1;P08729;CON__P08729;B3KY79;CON__Q9DCV7;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;CON__O95678;O95678;B4E1T1;CON__P04259;P04259;B4DKV4;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4;Q8N1N4-2 KRT3;KRT8;KRT86;GFAP;KRT83;KRT81;KRT85;HEL113;VIM;KRT7;KRT6A;KRT75;KRT6B;KRT5;KRT6C;KRT78 Keratin, type II cytoskeletal 3;Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb1;Keratin, type II cuticular Hb5;Vimentin;Glial fibrillary acidic protein;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 78 no no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 27.626 28.003 3 0.0052542 5938 20181213_JW_Orientia_Karp_2_2 104.2 28.459 21732000 7245400 5246700 5654800 0 1044500 0 1590100 950600 + 10146 796;1571;811;341;679;793;799;805;818 8684 61933;61934;61935;61936;61937;61938;61939 39539;39540;39541;39542 39541 4 VRNFWTSGSE Deamidation (NQ) 1182.5306 0.53055165 1073 Karp_00049 yes yes 0 1 0 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 49.058 49.36 2 0.0093937 16299 20181213_JW_Orientia_Karp_3_2 147.2 104.6 38447000 10203000 11056000 5992900 5445000 1741900 2446800 0 1561200 10147 1073 8685 61940;61941;61942;61943;61944;61945;61946 39543 39543 407 1 VRPAVAMDGGDIEYHSFK Oxidation (M) 2006.952 0.95201054 1200 Karp_00819 yes yes 0 0 1 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 1 2 1 2 1 2 37.828 38.115 3;4 0.012132 11566 20181213_JW_Orientia_Karp_3_1 96.805 68.593 395780000 94440000 95269000 137720000 3009400 12775000 2908400 49664000 0 10148 1200 8686 61947;61948;61949;61950;61951;61952;61953;61954;61955;61956;61957 39544;39545 39545 766 2 VRPAVAMDGGDIEYHSFK Unmodified 1990.9571 0.95709591 1200 Karp_00819 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 43.346 43.529 4 0.014213 14788 20181213_JW_Orientia_Karp_1_3 68.944 41.736 361200000 96912000 111530000 152760000 0 0 0 0 0 10149 1200 8686 61958;61959;61960 39546;39547;39548 39548 3 VRPSEEMLELEK Oxidation (M) 1474.7337 0.73374448 40 A0A024R152;Q9Y2D5-6;Q9Y2D5-4;C9JVY5;A0A024R167;B4E2K2;Q9Y2D5;Q9Y2D5-5;Q9Y2D5-7 hCG_28765;AKAP2 A-kinase anchor protein 2 yes no 0 0 1 1 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 34.999 35.32 3 0.020592 9643 20181213_JW_Orientia_Karp_2_1 95.183 49.293 13515000 1952000 5092800 1973700 1099300 1131800 417640 1848200 0 10150 40 8687 61961;61962;61963;61964;61965;61966;61967 39549 39549 25 1 VRYEGSYALTSEEAER Unmodified 1858.8697 0.86972069 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.631 37.944 3 6.2038E-06 11403 20181213_JW_Orientia_Karp_3_1 163.9 109.95 321000000 54694000 93324000 77104000 20040000 35014000 9483900 31343000 0 10151 345 8688 61968;61969;61970;61971;61972;61973;61974 39550;39551;39552;39553;39554;39555;39556 39556 7 VSAIELQLK Unmodified 999.59645 0.59644637 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.304 50.554 2 0.00079715 17759 20181213_JW_Orientia_Karp_2_2 141.52 36.774 381220000 86251000 83754000 38776000 88639000 40191000 43610000 0 0 10152 1428 8689 61975;61976;61977;61978;61979;61980;61981 39557;39558;39559;39560;39561;39562;39563 39561 7 VSAIGLMPTNWESHFK Oxidation (M) 1831.8927 0.89270474 1372 Karp_02002 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 1 53.667 54.008 2;3 0.00035537 21431 20181213_JW_Orientia_Karp_1_2 136.57 85.536 1102600000 283470000 288390000 189290000 109710000 65131000 159550000 6896100 206150 10153 1372 8690 61982;61983;61984;61985;61986;61987;61988;61989;61990;61991;61992;61993;61994;61995;61996 39564;39565;39566;39567;39568;39569;39570 39565 959 7 VSAIGLMPTNWESHFK Unmodified 1815.8978 0.89779012 1372 Karp_02002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 59.816 60.089 2;3 9.3331E-06 25397 20181213_JW_Orientia_Karp_1_2 157.09 116.85 548930000 159460000 130120000 116460000 13693000 54141000 48161000 26900000 0 10154 1372 8690 61997;61998;61999;62000;62001;62002;62003;62004;62005;62006;62007;62008;62009 39571;39572;39573;39574;39575;39576;39577;39578 39572 8 VSALDLAVLDQVEAR Unmodified 1597.8675 0.86753585 930 V9HW58;Q53H88;F5H2S7;Q13561;Q13561-3;Q13561-2;A8K8J9;F8W1I6;B3KTX4;H0YHL1 HEL-S-77;DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 70.462 70.582 2 0.002113 28191 20181213_JW_Orientia_Karp_2_2 123.02 71.732 46061000 10995000 0 0 4544700 10711000 4220000 15591000 0 10155 930 8691 62010;62011;62012;62013;62014 39579 39579 1 VSAPEVSVGHK Unmodified 1108.5877 0.58767259 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 29.849 30.119 3 0.0021622 7974 20181213_JW_Orientia_Karp_1_2 102.95 70.701 19223000 5000400 5476800 3484700 1864000 3396800 0 0 0 10156 1782 8692 62015;62016;62017;62018;62019 39580;39581;39582 39581 3 VSAPGVLTAQDR Unmodified 1212.6463 0.64625011 106 A0A024R542;Q9C0C2;B3KXS7;Q9C0C2-2 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 41.891 42.158 2 0.017847 14516 20181213_JW_Orientia_Karp_1_1 87.216 55.794 66614000 23522000 11476000 12530000 0 3280200 8776900 7028600 0 10157 106 8693 62020;62021;62022;62023;62024;62025 39583 39583 1 VSDAIMQLK Oxidation (M) 1019.5321 0.53213155 1237 Karp_00904 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 36.581 36.938 2 0.00051106 11296 20181213_JW_Orientia_Karp_1_2 154.12 56.688 176320000 65253000 31892000 38772000 7321300 7366600 3569100 17899000 4246500 10158 1237 8694 62026;62027;62028;62029;62030;62031;62032;62033 39584;39585;39586;39587 39585 799 4 VSDAIMQLK Unmodified 1003.5372 0.53721693 1237 Karp_00904 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 45.674 45.864 2 0.00024753 15943 20181213_JW_Orientia_Karp_1_3 167.23 105.12 136510000 59890000 46388000 23734000 0 5524700 978540 0 0 10159 1237 8694 62034;62035;62036;62037;62038;62039 39588;39589;39590;39591;39592 39590 5 VSEEAESQQQWDTSK Unmodified 1750.7646 0.76458692 506 D6W5C0;B2ZZ89;Q01082;K9MS24;Q01082-3;Q01082-2;B4DIF8;Q8WYB3 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 1 34.205 34.205 2 0.0064409 10400 20181213_JW_Orientia_Karp_1_1 114.87 73.751 0 0 0 0 0 0 0 0 0 10160 506 8695 62040 39593 39593 1 VSEEEVVNIESK Unmodified 1360.6722 0.67219008 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.324 43.651 2 5.7684E-40 14854 20181213_JW_Orientia_Karp_1_2 257.8 148.69 94212000 18566000 31760000 26601000 0 0 3665600 11565000 2055000 10161 1428 8696 62041;62042;62043;62044;62045;62046 39594;39595;39596;39597 39595 4 VSEGGPAEIAGLQIGDK Unmodified 1639.8417 0.84171503 1496 O14907 TAX1BP3 Tax1-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 55.855 56.294 2 2.3714E-17 19653 20181213_JW_Orientia_Karp_3_2 209.19 140.53 176540000 0 33304000 38951000 27495000 40441000 25721000 7872300 2757900 10162 1496 8697 62047;62048;62049;62050;62051;62052;62053;62054 39598;39599;39600;39601;39602;39603;39604;39605 39605 8 VSEIYGPEASGK Unmodified 1235.6034 0.60338224 1245 Karp_00915 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 36.162 36.495 2 0.0016493 11528 20181213_JW_Orientia_Karp_1_1 126.03 71.609 201530000 63630000 55197000 36917000 6845300 31443000 0 7501600 0 10163 1245 8698 62055;62056;62057;62058;62059;62060 39606;39607;39608;39609;39610 39606 5 VSEQGLIEILK Unmodified 1227.7075 0.70745338 1492 O14737;K7EQA1 PDCD5 Programmed cell death protein 5 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.773 61.093 2 6.886E-06 23426 20181213_JW_Orientia_Karp_2_2 176.6 78.016 123120000 12555000 10859000 12191000 7957600 30859000 37334000 114390 11250000 10164 1492 8699 62061;62062;62063;62064;62065;62066;62067;62068 39611;39612;39613;39614;39615;39616;39617 39615 7 VSFELFADK Unmodified 1054.5335 0.53351176 356;1888 V9HWF5;A8K486;P62937;B2RE56;B4DM82;F8WE65;C9J5S7;Q71V99 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 60.174 60.516 2 0.00021941 23408 20181213_JW_Orientia_Karp_2_3 181.55 99.308 207330000 0 42038000 80953000 11337000 34324000 28890000 9790800 0 10165 356;1888 8700 62069;62070;62071;62072;62073;62074;62075;62076 39618;39619;39620;39621;39622;39623 39622 6 VSFQIGSQK Unmodified 992.5291 0.52909508 1096 Karp_00250 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.321 40.642 2 2.5718E-06 12674 20181213_JW_Orientia_Karp_3_1 206.43 118.25 639070000 159770000 233480000 75177000 19014000 27629000 10586000 102190000 11230000 10166 1096 8701 62077;62078;62079;62080;62081;62082;62083;62084 39624;39625;39626;39627;39628;39629;39630;39631 39630 8 VSGAQEMVSSAK Oxidation (M) 1208.5707 0.5707019 1515 O60664-4;O60664-3;O60664;K7ERZ3;K7EL96;K7ER39 PLIN3 Perilipin-3 yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 21.727 22.243 2 0.0010222 3469 20181213_JW_Orientia_Karp_3_2 131.17 80.368 8164900 0 6015900 0 0 278670 0 1278400 591920 10167 1515 8702 62085;62086;62087;62088 39632;39633 39633 1123 2 VSGGLEVLAEK Unmodified 1100.6077 0.60773933 985 H0YN26;Q6PKH8;Q08AJ6;P39687;Q3KPI8;O43423 ANP32A;ANP32C Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member C yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 47.13 47.44 2 8.8697E-05 16093 20181213_JW_Orientia_Karp_2_1 161.51 101.34 42286000 9924800 9703400 8887500 5321500 0 5160200 0 3288500 10168 985 8703 62089;62090;62091;62092;62093;62094 39634;39635;39636;39637 39636 4 VSGISMDVAVPEETGQDPALEVEQCSCPPGYR Unmodified 3476.5534 0.55342022 195 A0A024RAB6;P98160 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 67.263 67.503 3 0.041123 29661 20181213_JW_Orientia_Karp_1_3 31.78 13.634 28317000 11387000 0 11229000 0 0 0 1388300 4313400 10169 195 8704 62095;62096;62097;62098 39638 39638 1 VSGPDLDLNLK Unmodified 1169.6292 0.62920306 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.486 54.802 2 2.2613E-05 20127 20181213_JW_Orientia_Karp_2_1 167.93 109.7 315130000 103400000 55913000 86129000 17905000 22559000 26655000 0 2575700 10170 1782 8705 62099;62100;62101;62102;62103;62104;62105 39639;39640;39641;39642;39643;39644;39645 39642 7 VSGQGLHEGHTFEPAEFIIDTR Unmodified 2439.1819 0.18188713 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;H0Y5C6 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 2 2 1 1 53.252 53.536 3;4 0.0049167 18472 20181213_JW_Orientia_Karp_3_2 76.678 37.154 511100000 118450000 226200000 103900000 23042000 15342000 23146000 0 1012800 10171 1615 8706 62106;62107;62108;62109;62110;62111;62112;62113;62114;62115;62116;62117 39646;39647 39647 2 VSHGDSEPHGGIVLNGEMYSR Oxidation (M);Deamidation (NQ) 2257.007 0.0069592315 1193 Karp_00798 yes yes 0 1 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 1 1 2 1 2 37.175 37.494 3;4 0.00039917 11528 20181213_JW_Orientia_Karp_1_2 110.64 82.528 174600000 84658000 37364000 15514000 1564000 11319000 1010700 23169000 0 10172 1193 8707 62118;62119;62120;62121;62122;62123;62124;62125;62126;62127;62128 39648;39649;39650;39651 39649 609 760 4 VSHGDSEPHGGIVLNGEMYSR Deamidation (NQ) 2241.012 0.012044609 1193 Karp_00798 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 41.383 41.666 4 0.036566 13192 20181213_JW_Orientia_Karp_3_1 42.64 18.218 58168000 31678000 0 20468000 0 0 0 6021500 0 10173 1193 8707 62129;62130;62131 39652;39653;39654 39654 609 3 VSHLLGINVTDFTR Unmodified 1570.8467 0.84674083 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 3 4 56.917 57.316 2;3 7.7908E-18 23625 20181213_JW_Orientia_Karp_1_2 221.09 174.36 734680000 46086000 259090000 274420000 18810000 30658000 51751000 10061000 43806000 10174 47 8708 62132;62133;62134;62135;62136;62137;62138;62139;62140;62141;62142;62143;62144;62145;62146;62147;62148;62149;62150;62151 39655;39656;39657;39658;39659;39660;39661;39662;39663;39664 39657 8 VSHQAGDHWLIR Unmodified 1417.7215 0.72148073 1800 X5D7K9;X5DNU0;X5D2M8;Q14764;B4DP93;B4DXN0;B4DDR2;X5D7S8;X5DP24 MVP Major vault protein yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 2 2 2 2 2 32.178 32.448 3;4 0.016856 9096 20181213_JW_Orientia_Karp_1_2 70.54 27.738 61292000 13977000 31880000 5287900 934450 9213200 0 0 0 10175 1800 8709 62152;62153;62154;62155;62156;62157;62158;62159;62160;62161 39665;39666 39665 2 VSHVSTGGGASLELLEGK Unmodified 1739.9054 0.90537792 1539 V9HWF4;P00558-2;P00558;B4DHB3;B4E1H9;B4DWQ3;B4DHM5;P07205 HEL-S-68p;PGK1;PGK2 Phosphoglycerate kinase;Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.165 45.531 2;3 5.6872E-05 14313 20181213_JW_Orientia_Karp_3_2 160.84 114.77 87959000 0 32900000 21046000 6295700 9130900 11372000 1388100 5827000 10176 1539 8710 62162;62163;62164;62165;62166;62167;62168;62169 39667;39668;39669;39670;39671;39672 39672 6 VSILAAIDEASK Unmodified 1215.6711 0.67106787 800 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 60.875 61.195 2 2.0754E-11 26114 20181213_JW_Orientia_Karp_1_2 204.56 126.3 163170000 61483000 22802000 19526000 5259600 14925000 19308000 263080 19602000 + 10177 800 8711 62170;62171;62172;62173;62174;62175;62176;62177 39673;39674;39675;39676;39677;39678;39679;39680;39681;39682 39675 10 VSIVTPEDILR Unmodified 1240.7027 0.70270235 322 A6NJA2;D3DUG9;B2RD79;P54578-2;B7Z4N8;P54578 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 63.966 64.082 2 0.027598 28246 20181213_JW_Orientia_Karp_1_1 80.916 41.068 15515000 8366400 3227900 3920300 0 0 0 0 0 10178 322 8712 62178;62179;62180 39683;39684 39683 2 VSLAGACGVGGYGSR Unmodified 1409.6721 0.67214728 799 CON__P13647;P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 43.314 43.658 2 2.2412E-06 14217 20181213_JW_Orientia_Karp_3_1 198.52 156.27 79311000 14608000 12442000 18108000 10435000 0 7671600 15680000 366680 + 10179 799 8713 62181;62182;62183;62184;62185;62186;62187;62188 39685;39686;39687;39688 39687 4 VSLDVNHFAPDELTVK Unmodified 1782.9152 0.91521432 1553 V9HW43;P04792;B4DL87;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 57.658 57.908 2;3 0.0016658 23781 20181213_JW_Orientia_Karp_1_3 103.66 68.565 7520200000 1312400000 2489900000 1194300000 730680000 1787400000 5559000 0 0 10180 1553 8714 62189;62190;62191;62192;62193;62194;62195 39689;39690;39691;39692;39693 39692 5 VSLDVNHFAPDELTVK Deamidation (NQ) 1783.8992 0.89922991 1553 V9HW43;P04792;B4DL87;F8WE04 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 3 2 2 2 59.17 59.454 2;3 2.7897E-06 25202 20181213_JW_Orientia_Karp_1_3 168.67 126.68 1388400000 386260000 143870000 180450000 91577000 273670000 304950000 7665500 0 10181 1553 8714 62196;62197;62198;62199;62200;62201;62202;62203;62204;62205;62206;62207;62208;62209;62210;62211 39694;39695;39696;39697;39698;39699;39700;39701;39702;39703;39704;39705;39706;39707 39699 1040 13 VSLEDLYNGK Deamidation (NQ) 1137.5554 0.55536941 140 A0A024R6S1;O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes no 0 1 0 0 By matching By matching By MS/MS 1 1 1 55.155 55.338 2 0.012649 22040 20181213_JW_Orientia_Karp_1_3 99.013 47.064 18894000 5694100 6574100 6625300 0 0 0 0 0 10182 140 8715 62212;62213;62214 39708 39708 56 1 VSLSLNFEEYK Unmodified 1327.666 0.66598249 1390 Karp_02139 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 59.901 60.194 2 4.7378E-13 23227 20181213_JW_Orientia_Karp_2_3 219.5 155.08 209630000 41468000 45560000 38283000 12068000 27928000 35740000 8585900 0 10183 1390 8716 62215;62216;62217;62218;62219;62220;62221;62222 39709;39710;39711;39712;39713;39714;39715;39716;39717;39718 39717 10 VSMDDSNLSK Oxidation (M) 1110.4863 0.48630357 1214 Karp_00878 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 22.907 23.123 2 0.00033101 4935 20181213_JW_Orientia_Karp_1_2 138.08 84.305 14886000 1397700 9268200 1236900 963010 1078200 942300 0 0 10184 1214 8717 62223;62224;62225;62226;62227;62228;62229 39719;39720;39721;39722;39723 39720 776 5 VSMPDVDLNLK Unmodified 1229.6326 0.63257388 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 58.676 58.976 2 0.0026028 24402 20181213_JW_Orientia_Karp_1_3 112.36 72.735 61305000 0 14800000 30581000 2606300 4975500 8342000 0 0 10185 1782 8718 62230;62231;62232;62233;62234;62235 39724;39725;39726;39727;39728 39726 5 VSMPDVDLNLK Oxidation (M) 1245.6275 0.6274885 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 48.801 49.17 2 0.035793 16331 20181213_JW_Orientia_Karp_3_2 72.434 42.767 44212000 8248700 0 0 13315000 4210800 9079700 77413 9280700 10186 1782 8718 62236;62237;62238;62239;62240;62241 39729 39729 1 VSMPDVELNLK Unmodified 1243.6482 0.64822394 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 58.834 59.101 2 0.0013725 24436 20181213_JW_Orientia_Karp_1_3 123.96 81.092 91292000 23024000 29418000 19134000 0 10192000 9245200 277880 0 10187 1782 8719 62242;62243;62244;62245;62246;62247 39730;39731;39732;39733;39734 39732 5 VSMPDVELNLK Oxidation (M) 1259.6431 0.64313856 1782 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 49.34 49.627 2 0.0016906 17363 20181213_JW_Orientia_Karp_2_3 117.71 67.991 51386000 0 0 21641000 8751900 13128000 7865400 0 0 10188 1782 8719 62248;62249;62250;62251 39735;39736 39736 1434 2 VSMPYASK Oxidation (M) 897.4266 0.42660385 1466;1549 L8E853;A8K7V7;B4DNX0;P04275-2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 22.336 22.721 2 0.0094631 4832 20181213_JW_Orientia_Karp_1_2 101.6 48.249 10236000 3513300 3869600 0 0 488930 329420 1482300 552320 10189 1466;1549 8720 62252;62253;62254;62255;62256;62257 39737;39738;39739 39738 1089 3 VSNLTAPSSKLILMIDNDLTNGNFNPHTIK Oxidation (M) 3282.6918 0.69182667 2042 yes yes 0 0 1 1 By matching By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 73.426 73.455 3 0.02205 33913 20181213_JW_Orientia_Karp_1_2 56.172 19.668 420580000 166770000 83592000 90481000 0 0 15709000 46672000 17359000 + + 10190 2042 8721 62258;62259;62260;62261;62262;62263;62264 39740 39740 1558 1 VSPESTANASSYQK Unmodified 1467.6842 0.68415175 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.501 28.823 2 2.232E-05 7425 20181213_JW_Orientia_Karp_1_2 171.62 105.56 120690000 29320000 22397000 43146000 5741600 11478000 3311300 5295400 0 10191 1449 8722 62265;62266;62267;62268;62269;62270;62271;62272 39741;39742;39743;39744;39745;39746;39747;39748 39742 8 VSPESTANASSYQK Deamidation (NQ) 1468.6682 0.66816734 1449 Karp_02529 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 31.703 31.995 2 0.00088148 9214 20181213_JW_Orientia_Karp_1_1 146.5 98.412 14937000 5089700 4855000 0 0 955500 869970 0 3167200 10192 1449 8722 62273;62274;62275;62276;62277 39749;39750 39749 978 2 VSPEVSDDEEGDK Unmodified 1404.5892 0.58924832 1193 Karp_00798 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 29.644 29.972 2 0.0027683 7866 20181213_JW_Orientia_Karp_1_2 118.77 71.875 68279000 15376000 10906000 22574000 5701200 4522600 0 9199900 0 10193 1193 8723 62278;62279;62280;62281;62282;62283;62284 39751;39752 39751 2 VSPLTFGR Unmodified 875.4865 0.48650199 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 46.598 46.914 2 0.020972 17175 20181213_JW_Orientia_Karp_1_1 87.696 41.744 164560000 62269000 0 24389000 33399000 9355800 33733000 544180 871740 10194 345 8724 62285;62286;62287;62288;62289;62290;62291 39753 39753 1 VSQMAQYFEPLTLAAVGAASK Unmodified 2181.114 0.11399049 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 73.124 73.206 2 0.0012479 33764 20181213_JW_Orientia_Karp_1_1 130.27 91.905 37468000 10242000 9314500 17911000 0 0 0 0 0 10195 2016 8725 62292;62293;62294 39754 39754 1 VSSGYVPPPVATPFSSK Unmodified 1718.8879 0.88793694 1812 Q15942;Q96AF9;Q28617;B4DY85;Q9BUS0;B4DQX7;H7C3R3 ZYX Zyxin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 57.429 57.8 2 0.0015307 21923 20181213_JW_Orientia_Karp_2_1 114.87 76.847 107110000 0 26422000 28563000 15280000 0 18736000 0 18109000 10196 1812 8726 62295;62296;62297;62298;62299 39755;39756;39757;39758;39759;39760 39757 6 VSSIDLEIDSLSSLLDDMTK Oxidation (M) 2196.0719 0.071910479 1812 Q15942;Q96AF9;Q28617;B4DY85;C9IZ41;H7C3R3 ZYX Zyxin yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 75.846 75.845 2 2.0351E-38 30687 20181213_JW_Orientia_Karp_2_2 239.75 182.31 50643000 0 0 9969200 6863700 11250000 5980100 16580000 0 10197 1812 8727 62300;62301;62302;62303;62304;62305 39761;39762;39763;39764;39765;39766 39764 1451 6 VSSLNMTLEDYNK Unmodified 1512.713 0.71300904 1062 Karp_00006 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 50.932 51.232 2 0.00042791 19440 20181213_JW_Orientia_Karp_1_3 155.47 88.511 38393000 11452000 14701000 10046000 0 0 0 2193100 0 10198 1062 8728 62306;62307;62308;62309 39767;39768 39768 2 VSSNIIAIASDQK Unmodified 1344.7249 0.72489436 1183 Karp_00671 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.093 49.459 2 1.964E-05 18804 20181213_JW_Orientia_Karp_1_1 210.93 144.36 308020000 81315000 88689000 0 45838000 23443000 40829000 438470 27470000 10199 1183 8729 62310;62311;62312;62313;62314;62315;62316;62317 39769;39770 39769 2 VSTEMMQAFTGMK 3 Oxidation (M) 1507.6357 0.6356867 1067 Karp_00016 yes yes 0 0 3 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 32.159 32.579 2 0.0005243 9119 20181213_JW_Orientia_Karp_1_2 126.66 83.24 5186800 2445600 0 0 0 0 0 1649700 1091500 10200 1067 8730 62318;62319;62320;62321;62322;62323;62324 39771;39772;39773;39774;39775 39772 588;589;590 5 VSTEMMQAFTGMK 2 Oxidation (M) 1491.6408 0.64077208 1067 Karp_00016 yes yes 0 0 2 0 By matching By matching By MS/MS By matching 1 1 1 1 42.67 42.97 2 0.017145 14369 20181213_JW_Orientia_Karp_1_3 81.92 54.591 16994000 5905900 3650500 4951400 0 0 0 2486600 0 10201 1067 8730 62325;62326;62327;62328 39776 39776 588;589;590 1 VSTLPAITLK Unmodified 1041.6434 0.64339656 1009 H7C469;V9HWI3;P07339;H7C1V0 HEL-S-130P;CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 53.921 54.279 2 0.00081072 22050 20181213_JW_Orientia_Karp_1_1 128.12 61.77 162750000 30775000 25005000 18420000 18513000 21595000 40436000 448630 7554800 10202 1009 8731 62329;62330;62331;62332;62333;62334;62335;62336 39777;39778;39779;39780;39781;39782;39783 39777 7 VSTVQPLVPVLEAVAHTGK Unmodified 1944.1044 0.10441208 1296 Karp_01187 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 2 3 2 1 65.306 65.501 2;3 0.015262 25617 20181213_JW_Orientia_Karp_2_2 64.89 37.039 3024700000 911360000 800320000 534390000 0 283730000 270740000 223740000 449270 10203 1296 8732 62337;62338;62339;62340;62341;62342;62343;62344;62345;62346;62347;62348;62349;62350;62351;62352 39784;39785;39786;39787;39788 39786 4 VSTWDGMPVLDPSR Oxidation (M) 1574.7399 0.73989249 2036 yes no 0 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 2 55.878 56.29 2 0.021455 19681 20181213_JW_Orientia_Karp_3_1 81.338 14.004 186820000 32311000 26778000 41720000 14700000 25660000 18385000 18302000 8965300 + 10204 2036 8733 62353;62354;62355;62356;62357;62358;62359;62360;62361;62362 39789;39790 39789 1556 2 VSVDEQFSALAFK Unmodified 1439.7296 0.72964538 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 62.78 63.038 2 4.5397E-17 26817 20181213_JW_Orientia_Karp_1_3 214.04 137.82 81881000 22873000 22674000 19982000 2258000 7436700 4517200 0 2139800 10205 1094 8734 62363;62364;62365;62366;62367;62368;62369 39791;39792;39793;39794;39795;39796 39793 6 VSVELTNSLFK Unmodified 1235.6762 0.67615325 59 A0A024R1X8;P14923 JUP Junction plakoglobin yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 58.681 58.921 2 0.026117 22682 20181213_JW_Orientia_Karp_2_3 81.771 33.68 7168300 951000 0 2600200 0 0 3391500 0 225630 10206 59 8735 62370;62371;62372;62373 39797 39797 1 VSVGAPDLSLEASEGSIK Unmodified 1757.9047 0.90470922 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 57.336 57.643 2 3.0325E-23 24185 20181213_JW_Orientia_Karp_1_1 204.35 143.19 270470000 75031000 81803000 58430000 15279000 20436000 16944000 2550000 0 10207 1782 8736 62374;62375;62376;62377;62378;62379;62380 39798;39799;39800;39801;39802;39803 39798 6 VSVINTVDTSHEDMIHDAQMDYYGTR Acetyl (Protein N-term);2 Oxidation (M) 3070.3284 0.3284293 305 A4UCS7;A8MWR8;Q53GB2;P55735 SEC13 Protein SEC13 homolog yes no 1 0 2 0 By matching By MS/MS By matching 1 1 1 58.255 58.608 3 0.01755 24172 20181213_JW_Orientia_Karp_1_3 43.932 30.037 8514500 0 3658700 4241700 0 0 0 0 614100 10208 305 8737 62381;62382;62383 39804 39804 213;214 1 VSVPLHFLVTR Unmodified 1266.7448 0.74484194 1348 Karp_01524 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 55.131 55.398 3 0.029817 21995 20181213_JW_Orientia_Karp_1_3 91.313 66.814 265770000 45803000 30877000 69229000 5463100 43728000 70669000 0 0 10209 1348 8738 62384;62385;62386;62387;62388;62389 39805;39806;39807 39806 3 VSYFPTVPGVYIVSTK Unmodified 1755.9447 0.94472354 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4;H7C5L4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.227 71.333 2 0.00010696 32648 20181213_JW_Orientia_Karp_1_1 156.81 107.46 191150000 50472000 34160000 72409000 3460500 4461800 3893100 22296000 0 10210 1520 8739 62390;62391;62392;62393;62394;62395;62396 39808;39809;39810;39811;39812;39813;39814 39808 7 VSYQDYEIEISDASEVEK Unmodified 2102.9532 0.95317555 1611 P20591;F8W8T1;Q8NAA8;P20591-2;H9KVC7;H9KVC9 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 60.066 60.304 2 7.3834E-09 23186 20181213_JW_Orientia_Karp_2_1 169.15 126.94 48341000 32290000 0 0 4415400 6153800 5481700 0 0 10211 1611 8740 62397;62398;62399;62400 39815;39816;39817 39815 3 VTAEVVLAHLGGGSTSR Unmodified 1652.8846 0.8845829 1554 Q6IBR0;Q53EP4;P04843;Q96HX3;F8WF32 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 49.183 49.586 2 0.00082103 18540 20181213_JW_Orientia_Karp_1_2 120.84 85.614 20315000 5956300 12086000 0 0 0 0 80959 2192400 10212 1554 8741 62401;62402;62403;62404 39818 39818 1 VTAIAMAYR Unmodified 994.52699 0.52698659 1416 Karp_02253 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 43.743 44.018 2 0.0043637 15595 20181213_JW_Orientia_Karp_1_1 136.8 85.604 7750800 0 4429400 3321400 0 0 0 0 0 10213 1416 8742 62405;62406;62407 39819;39820;39821 39819 3 VTAPDVDLHLK Unmodified 1206.6608 0.66083754 1782 Q09666;Q6ZQN2 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 45.752 46.075 2;3 0.022458 14543 20181213_JW_Orientia_Karp_3_2 83.883 44.861 57021000 4520700 33248000 5215800 1733000 1711200 5578600 628020 4385700 10214 1782 8743 62408;62409;62410;62411;62412;62413;62414;62415;62416 39822;39823;39824 39824 3 VTAPPEAEYSGLVR Unmodified 1487.762 0.76200815 210 A8K6A5;A0A024RB01;P08648;B2R627 ITGA5 Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 49.665 49.915 2 0.031092 18464 20181213_JW_Orientia_Karp_1_3 77.387 51.495 103450000 26054000 26622000 31631000 8786600 4196100 6157900 0 0 10215 210 8744 62417;62418;62419;62420;62421;62422 39825 39825 1 VTAQGPGLEPSGNIANK Unmodified 1651.8529 0.85294842 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 40.991 41.261 2 1.2488E-11 13975 20181213_JW_Orientia_Karp_1_1 184.11 136.26 101170000 33178000 27045000 27144000 0 2679700 0 11121000 0 10216 1615 8745 62423;62424;62425;62426;62427 39826;39827;39828;39829 39826 4 VTASGPGLSSYGVPASLPVDFAIDAR Unmodified 2546.3017 0.30166791 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 73.592 73.608 2 3.9379E-07 34067 20181213_JW_Orientia_Karp_1_2 119.08 82.063 141400000 59047000 55844000 26508000 0 0 0 0 0 10217 1520 8746 62428;62429;62430 39830;39831 39831 2 VTAYTVDVTGR Unmodified 1180.6088 0.60880197 1782 Q09666;B4DTV0 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 43.168 43.51 2 0.0050399 14781 20181213_JW_Orientia_Karp_1_2 105.17 62.301 29405000 0 12374000 4880400 3141100 2474000 2016100 4519900 0 10218 1782 8747 62431;62432;62433;62434;62435;62436 39832;39833;39834 39832 3 VTDDLVCLVYK Unmodified 1323.6744 0.67443869 1684 P49458;Q8WVW9 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 60.796 61.113 2 0.018032 23712 20181213_JW_Orientia_Karp_2_1 120.99 84.542 6879000 0 0 0 1397200 2471800 3010000 0 0 10219 1684 8748 62437;62438;62439 39835 39835 0 VTDEVVYLSALEEGR Unmodified 1678.8414 0.84138068 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.873 64.106 2 1.028E-19 24319 20181213_JW_Orientia_Karp_3_2 266.74 203.04 368460000 125480000 95131000 57816000 8214900 41575000 28961000 1239200 10043000 10220 1170 8749 62440;62441;62442;62443;62444;62445;62446;62447 39836;39837;39838;39839;39840;39841;39842 39842 7 VTDLISHMHK Oxidation (M) 1195.6019 0.60194245 1266 Karp_01074 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 2 2 2 2 2 21.703 22.071 2;3 0.0087853 4401 20181213_JW_Orientia_Karp_3_1 91.087 42.647 85561000 824570 17834000 8968000 15368000 10895000 16174000 7913300 7585000 10221 1266 8750 62448;62449;62450;62451;62452;62453;62454;62455;62456;62457;62458;62459;62460;62461;62462 39843;39844;39845;39846;39847 39847 835 5 VTDLISHMHK Unmodified 1179.607 0.60702783 1266 Karp_01074 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 30.423 30.825 3 0.0028402 8303 20181213_JW_Orientia_Karp_1_3 97.565 50.338 46251000 14794000 19039000 4851000 1679600 2157300 0 3155600 573580 10222 1266 8750 62463;62464;62465;62466;62467;62468;62469 39848;39849;39850;39851;39852;39853 39851 6 VTDLLGGLFSK Unmodified 1148.6441 0.64412484 1480 M0QXU7;Q9UPE4;Q53G69;O43615 TIMM44;hTIM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 0 0 0 0 By matching By MS/MS By matching 1 1 1 68.935 69.102 2 0.0011344 31029 20181213_JW_Orientia_Karp_1_2 127.42 69.464 6840600 2964300 2420600 0 0 0 0 1455700 0 10223 1480 8751 62470;62471;62472 39854 39854 1 VTEAEIVPMGK Unmodified 1172.6111 0.61111015 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;H7C5L4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 46.683 46.925 2 8.0479E-08 16525 20181213_JW_Orientia_Karp_1_3 193.38 116.7 63454000 24890000 23028000 12017000 0 908190 0 0 2611400 10224 1520 8752 62473;62474;62475;62476;62477 39855;39856;39857;39858 39857 4 VTEAEIVPMGK Oxidation (M) 1188.606 0.60602477 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;H7C5L4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By MS/MS 1 39.495 40.005 2 0.023816 11945 20181213_JW_Orientia_Karp_3_2 94.309 63.745 0 0 0 0 0 0 0 0 0 10225 1520 8752 62478 39859 39859 1134 1 VTEGLTDVILYHQPDDK Unmodified 1941.9684 0.96837211 475 Q05CK9;B2R8Z8;O60506-4;O60506-3;O60506-2;O60506;Q59GL1;B7Z645;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 55.482 55.748 3 0.022162 22239 20181213_JW_Orientia_Karp_1_3 86.548 64.351 129380000 36376000 24171000 33046000 11933000 12736000 11114000 0 0 10226 475 8753 62479;62480;62481;62482;62483;62484 39860;39861;39862;39863;39864 39862 5 VTEGLVDVILYHQPDDK Unmodified 1939.9891 0.98910755 469 Q0VGD6;B2R7W4;O43390;B4DT28;B4DMB1;O43390-3 HNRPR;HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS 1 62.351 62.351 3 0.0071921 27155 20181213_JW_Orientia_Karp_1_1 84.046 45.385 35744000 35744000 0 0 0 0 0 0 0 10227 469 8754 62485 39865 39865 1 VTFMFVTR Unmodified 999.52117 0.52117293 1444 Karp_02422 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 58.543 58.726 2 0.0041282 24491 20181213_JW_Orientia_Karp_1_2 149.65 76.614 16587000 9367200 3605900 3613800 0 0 0 0 0 10228 1444 8755 62486;62487;62488 39866;39867 39866 2 VTGEVLDILTR Unmodified 1214.6871 0.68705229 289 A2VCL5;Q6IB58;Q5ST80;Q53HQ0;O75955-2;O75955 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS 1 62.419 62.769 2 0.0087556 27034 20181213_JW_Orientia_Karp_1_2 119.34 53.065 0 0 0 0 0 0 0 0 0 10229 289 8756 62489 39868 39868 1 VTHAVVTVPAYFNDAQR Unmodified 1886.9639 0.96389585 1585 V9HWB4;P11021;B4DEF7 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 49.306 49.593 3 0.01574 17257 20181213_JW_Orientia_Karp_2_2 78.326 32.463 58114000 0 0 18126000 16622000 8676900 14689000 0 0 10230 1585 8757 62490;62491;62492;62493 39869;39870 39870 2 VTIAQGGVLPNIQAVLLPK Unmodified 1930.1615 0.16153303 28 A3KPC7;A0A024RAS2;Q08AJ9;B2R5B3;A4FTV9;A0A024R017;Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;B4E0B3 HIST1H2AH;H2AFJ;HIST1H2AB;HIST1H2AK;HIST1H2AC;HIST1H2AJ;HIST2H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 1 2 2 4 2 74.165 74.2 2;3 3.1236E-55 29918 20181213_JW_Orientia_Karp_2_1 269.05 225.75 43486000000 11494000000 16087000000 81505000 1312200000 1722400000 1501800000 7651400000 3636300000 10231 28 8758 62494;62495;62496;62497;62498;62499;62500;62501;62502;62503;62504;62505;62506;62507;62508;62509;62510;62511;62512;62513;62514 39871;39872;39873;39874;39875;39876;39877;39878;39879;39880;39881;39882;39883;39884;39885 39879 15 VTIAQGGVLPNIQAVLLPK Deamidation (NQ) 1931.1455 0.14554861 28 A3KPC7;A0A024RAS2;Q08AJ9;B2R5B3;A4FTV9;A0A024R017;Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;B4E0B3 HIST1H2AH;H2AFJ;HIST1H2AB;HIST1H2AK;HIST1H2AC;HIST1H2AJ;HIST2H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E yes no 0 1 0 0 By matching By matching By MS/MS 1 1 1 74.102 74.102 2 2.1503E-08 30186 20181213_JW_Orientia_Karp_2_3 178.15 143.97 609490000 268530000 334500000 0 0 0 6465600 0 0 10232 28 8758 62515;62516;62517 39886 39886 1257 1 VTIAQGGVLPNIQAVLLPKK Unmodified 2058.2565 0.25649604 28 A3KPC7;A0A024RAS2;Q08AJ9;B2R5B3;A4FTV9;A0A024R017;Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;B4E0B3 HIST1H2AH;H2AFJ;HIST1H2AB;HIST1H2AK;HIST1H2AC;HIST1H2AJ;HIST2H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E yes no 0 0 0 1 By MS/MS By MS/MS 1 1 66.988 67.088 3 0.000736 26330 20181213_JW_Orientia_Karp_2_2 128.64 107.69 0 0 0 0 0 0 0 0 0 10233 28 8759 62518;62519 39887;39888 39887 2 VTIMWTPPESAVTGYR Oxidation (M) 1822.8924 0.89237039 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 60.837 61.158 2 1.2126E-05 25705 20181213_JW_Orientia_Karp_1_3 160.86 93.472 178900000 63964000 32556000 28637000 7723100 11982000 9428500 7407600 17201000 10234 85 8760 62520;62521;62522;62523;62524;62525;62526;62527 39889;39890;39891;39892;39893 39891 99 5 VTIMWTPPESAVTGYR Unmodified 1806.8975 0.89745577 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 64.807 65.028 2 0.013553 28782 20181213_JW_Orientia_Karp_1_1 109.72 54.937 113620000 40621000 45176000 24907000 1505100 0 0 0 1413800 10235 85 8760 62528;62529;62530;62531;62532 39894;39895 39894 1 VTIQASGGLSK Unmodified 1059.5924 0.59242362 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 3 2 2 3 2 35.577 35.962 1;2 3.6909E-07 11256 20181213_JW_Orientia_Karp_1_1 185.99 81.247 1649200000 438550000 456770000 396660000 75426000 6625300 40346000 192210000 42552000 10236 1074 8761 62533;62534;62535;62536;62537;62538;62539;62540;62541;62542;62543;62544;62545;62546;62547;62548;62549;62550 39896;39897;39898;39899;39900;39901;39902;39903;39904 39896 9 VTLAINAGDK Unmodified 1000.5553 0.55530983 1217 Karp_00884 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 41.392 41.708 2 0.018777 13706 20181213_JW_Orientia_Karp_1_3 84.817 28.088 67964000 30131000 16895000 10481000 2507100 0 546840 7402600 0 10237 1217 8762 62551;62552;62553;62554;62555;62556 39905 39905 1 VTLAINAGDKK Unmodified 1128.6503 0.65027285 1217 Karp_00884 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 32.436 32.829 3 0.033453 9292 20181213_JW_Orientia_Karp_1_2 61.435 26.714 26209000 8217400 8122700 4880700 2115600 0 0 2504300 368370 10238 1217 8763 62557;62558;62559;62560;62561;62562 39906;39907 39907 2 VTLALQPNMQDSSNPR Oxidation (M);2 Deamidation (NQ) 1787.836 0.83597772 255 A0A024RDC0 hCG_2027421 yes yes 0 2 1 0 By MS/MS 1 57.875 57.875 2 0.042786 24273 20181213_JW_Orientia_Karp_1_1 50.354 8.6494 5769100 5769100 0 0 0 0 0 0 0 10239 255 8764 62563 39908 39908 1344 0 VTLATLK Unmodified 744.47454 0.47454032 1562 P06748-2;P06748;A4ZU86;P06748-3;Q9BTI9;E5RI98;V9HVU7;A0A024RAP1 NPM1;CLEC2D Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 1 2 39.004 39.316 1;2 0.02548 12610 20181213_JW_Orientia_Karp_1_2 95.352 28.553 266990000 61583000 48404000 50836000 61028000 22033000 7216200 15895000 0 10240 1562 8765 62564;62565;62566;62567;62568;62569;62570;62571;62572;62573;62574;62575;62576 39909;39910;39911 39910 2 VTLIGNLGHDPEIR Unmodified 1532.8311 0.83109076 1302 Karp_01239 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 1 1 49.428 49.734 2;3 1.3157E-11 18557 20181213_JW_Orientia_Karp_1_2 198.97 129.7 3615100000 1146900000 812750000 417370000 605250000 238570000 321480000 598440 72197000 10241 1302 8766 62577;62578;62579;62580;62581;62582;62583;62584;62585;62586;62587 39912;39913;39914;39915;39916;39917;39918;39919 39913 8 VTLIGNLGHDPEIR Deamidation (NQ) 1533.8151 0.81510635 1302 Karp_01239 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 54.66 54.98 3 0.0080999 22080 20181213_JW_Orientia_Karp_1_2 102.66 47.209 56848000 0 12499000 16231000 3008200 6940900 18169000 0 0 10242 1302 8766 62588;62589;62590;62591;62592 39920 39920 738 1 VTLINCIK Unmodified 959.54739 0.54738768 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.378 45.561 2 0.011571 15929 20181213_JW_Orientia_Karp_1_2 101.28 48.601 116700000 44600000 45912000 26185000 0 0 0 0 0 10243 1428 8767 62593;62594;62595 39921;39922;39923 39922 3 VTLTLPVLNAAR Unmodified 1266.766 0.76597131 1485 M0R261;O95336 PGLS 6-phosphogluconolactonase yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 65.137 65.253 2 0.0049867 28944 20181213_JW_Orientia_Karp_1_1 115.23 85.759 15094000 7523100 3905000 3665700 0 0 0 0 0 10244 1485 8768 62596;62597;62598 39924 39924 1 VTLTSEEEAR Unmodified 1133.5564 0.55643205 587 B4DJI1;V9HWB9;P00338-4;P00338;P00338-3 HEL-S-133P;LDHA L-lactate dehydrogenase;L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS 1 31.834 31.834 2 0.0098294 9232 20181213_JW_Orientia_Karp_1_1 93.667 63.591 4849200 4849200 0 0 0 0 0 0 0 10245 587 8769 62599 39925 39925 1 VTLVFGQMNEPPGAR Oxidation (M) 1630.8137 0.81372614 1341 Karp_01515 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.761 52.106 2 0.00063562 20472 20181213_JW_Orientia_Karp_1_1 135.94 65.253 161220000 38342000 26288000 42318000 12257000 14025000 11088000 13612000 3296200 10246 1341 8770 62600;62601;62602;62603;62604;62605;62606;62607 39926;39927;39928;39929;39930;39931 39926 905 6 VTLVFGQMNEPPGAR Unmodified 1614.8188 0.81881152 1341 Karp_01515 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 57.949 58.25 2 4.5179E-13 23897 20181213_JW_Orientia_Karp_1_3 199.8 139.74 103160000 35972000 17780000 23394000 6669600 7219700 5090800 0 7032000 10247 1341 8770 62608;62609;62610;62611;62612;62613;62614 39932;39933;39934;39935;39936 39934 5 VTLVQTLEIQR Unmodified 1298.7558 0.75580056 1803 Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-4;Q15149-6;Q15149-3;Q15149-2;Q15149 PLEC Plectin yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.263 56.621 2 0.0031033 19770 20181213_JW_Orientia_Karp_3_2 118.28 53.438 63948000 22722000 16490000 12746000 4269100 3582900 3598000 200830 340100 10248 1803 8771 62615;62616;62617;62618;62619;62620;62621;62622 39937;39938 39938 1 VTMQNLNDR Oxidation (M) 1105.5186 0.51860675 798;790;795;791 CON__P02533;P02533;CON__A2A4G1;Q6ZPD6;CON__Q7Z3Y9;Q7Z3Y9;CON__P02535-1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 no no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 22.212 22.557 2 5.1682E-06 3800 20181213_JW_Orientia_Karp_2_2 200.56 123.79 622830000 56230000 91971000 63212000 150800000 74766000 70880000 79858000 35113000 + 10249 790;791;795;798 8772 62623;62624;62625;62626;62627;62628;62629;62630 39939;39940;39941;39942;39943;39944;39945;39946;39947 39943 455 9 VTMQNLNDR Oxidation (M);Deamidation (NQ) 1106.5026 0.50262234 798;790;795;791 CON__P02533;P02533;CON__A2A4G1;Q6ZPD6;CON__Q7Z3Y9;Q7Z3Y9;CON__P02535-1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 no no 0 1 1 0 By MS/MS By matching By MS/MS 1 1 1 24.404 24.705 2 0.0011322 5525 20181213_JW_Orientia_Karp_3_1 140.17 61.906 35365000 6060200 0 0 0 18030000 0 11275000 0 + 10250 790;791;795;798 8772 62631;62632;62633 39948;39949 39949 267 455 2 VTMQNLNDR Unmodified 1089.5237 0.52369213 798;790;795;791 CON__P02533;P02533;CON__A2A4G1;Q6ZPD6;CON__Q7Z3Y9;Q7Z3Y9;CON__P02535-1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1 32.542 32.847 2 0.00010305 9700 20181213_JW_Orientia_Karp_1_1 189.18 87.925 431350000 88568000 101700000 74222000 63709000 0 33936000 69221000 0 + 10251 790;791;795;798 8772 62634;62635;62636;62637;62638;62639;62640;62641;62642 39950;39951;39952;39953;39954;39955 39950 6 VTMQNLNDR Deamidation (NQ) 1090.5077 0.50770771 798;790;795;791 CON__P02533;P02533;CON__A2A4G1;Q6ZPD6;CON__Q7Z3Y9;Q7Z3Y9;CON__P02535-1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 no no 0 1 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 35.17 35.563 2 0.0044277 9603 20181213_JW_Orientia_Karp_3_2 116.52 50.247 84198000 26746000 20726000 23163000 3861600 0 0 7694600 2006500 + 10252 790;791;795;798 8772 62643;62644;62645;62646;62647;62648 39956;39957;39958 39958 267 3 VTNGAFTGEISPGMIK Deamidation (NQ) 1621.8022 0.8021584 1715 V9HWK1;Q53HE2;P60174-1;P60174;B4DUI5;Q2QD09 HEL-S-49;TPI1 Triosephosphate isomerase yes no 0 1 0 0 By matching By MS/MS By matching By matching 1 1 1 1 58.729 59.091 2 0.0072705 22572 20181213_JW_Orientia_Karp_2_1 106.29 61.429 21242000 0 0 10714000 3998800 6257400 0 271450 0 10253 1715 8773 62649;62650;62651;62652 39959 39959 1130 1 VTNLLMLK Unmodified 930.55722 0.55722409 1633 P26599;P26599-2;P26599-3;K7ELW5;K7EKJ7;Q59H49;K7ES59;X6R242;A0A024R163;O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4 PTBP1;PTBP3;ROD1 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 53.817 53.916 2 0.0023426 21747 20181213_JW_Orientia_Karp_1_1 160.63 0 19105000 10704000 0 8400800 0 0 0 0 0 10254 1633 8774 62653;62654 39960;39961 39960 2 VTPPEGYEVVTVFPK Unmodified 1660.8712 0.87122424 1487 V9HW92;O00151 HEL-S-112;PDLIM1 PDZ and LIM domain protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 62.605 62.907 2 0.024161 27190 20181213_JW_Orientia_Karp_1_2 81.709 23.823 124830000 27087000 32336000 28630000 9043400 0 19109000 112270 8510800 10255 1487 8775 62655;62656;62657;62658;62659;62660;62661 39962;39963 39962 2 VTPSIVAFTANGEVLVGDSAK Unmodified 2074.0946 0.094635252 1074 Karp_00050 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.352 68.582 2 3.3713E-50 24285 20181213_JW_Orientia_Karp_3_1 282.52 233.78 54730000 13974000 4668500 8904700 3914500 6974500 0 8134100 8159300 10256 1074 8776 62662;62663;62664;62665;62666;62667;62668 39964;39965;39966;39967;39968;39969;39970;39971 39970 8 VTPSIVAFTANGEVLVGDSAK Deamidation (NQ) 2075.0787 0.078650837 1074 Karp_00050 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 2 4 4 4 1 71.164 71.26 2;3 7.1036E-75 31895 20181213_JW_Orientia_Karp_1_3 278.19 212.17 2731100000 561680000 509470000 541480000 22359000 278780000 223350000 363140000 230860000 10257 1074 8776 62669;62670;62671;62672;62673;62674;62675;62676;62677;62678;62679;62680;62681;62682;62683;62684;62685;62686;62687;62688;62689;62690;62691;62692;62693 39972;39973;39974;39975;39976;39977;39978;39979;39980;39981;39982 39975 422 11 VTQNNYVYDNLK Unmodified 1469.7151 0.71505795 1112 Karp_00294 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 41.837 42.127 2 6.59E-23 13994 20181213_JW_Orientia_Karp_1_2 232.56 158.39 42145000 11721000 8558200 12013000 0 0 3269800 6583300 0 10258 1112 8777 62694;62695;62696;62697;62698;62699;62700 39983;39984;39985;39986;39987 39984 5 VTQNNYVYDNLK Deamidation (NQ) 1470.6991 0.69907354 1112 Karp_00294 yes yes 0 1 0 0 By MS/MS 1 45.38 45.73 2 0.019457 16090 20181213_JW_Orientia_Karp_1_2 98.182 65.432 0 0 0 0 0 0 0 0 0 10259 1112 8777 62701 39988 39988 487 1 VTQSDLYK Unmodified 952.48656 0.48656157 1507 Q6FGS1;O43399;O43399-5;O43399-7;Q53GA0;B4DDV4 TPD52L2 Tumor protein D54 yes no 0 0 0 0 By matching By matching By MS/MS 1 1 1 30.261 30.628 2 0.015003 7811 20181213_JW_Orientia_Karp_3_1 95.741 34.943 14945000 12209000 0 0 0 257320 0 2479300 0 10260 1507 8778 62702;62703;62704 39989 39989 1 VTQSNFAVGYK Unmodified 1212.6139 0.61388734 1616 P21796;B3KTS5;B4DEI3;C9JI87 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 39.61 39.881 2 2.055E-13 12799 20181213_JW_Orientia_Karp_1_2 232.88 150.45 187570000 64567000 39547000 57368000 0 5747700 0 20340000 0 10261 1616 8779 62705;62706;62707;62708;62709 39990;39991;39992;39993;39994;39995 39992 6 VTQTLIPYYISVK Unmodified 1523.8599 0.85993128 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 64.385 64.597 2 0.0066184 24573 20181213_JW_Orientia_Karp_3_2 105.17 65.546 37877000 0 12553000 9952900 0 7552000 5897900 0 1921600 10262 1789 8780 62710;62711;62712;62713;62714 39996 39996 1 VTRSQQQPTPVTPKK 3 Deamidation (NQ) 1696.8996 0.89956426 1530 O95251-2;O95251-4;O95251 KAT7 Histone acetyltransferase KAT7 yes no 0 3 0 2 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 68.732 68.934 2 0.041153 30663 20181213_JW_Orientia_Karp_1_3 68.536 11.187 32342000 9681500 4891200 8743200 0 0 0 6767300 2258500 10263 1530 8781 62715;62716;62717;62718;62719 39997 39997 1914;1915;1916 1 VTSIDELK Unmodified 903.49131 0.49131259 1252 Karp_00931 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 38.377 38.71 2 0.016011 11279 20181213_JW_Orientia_Karp_3_2 94.114 35.197 239540000 162480000 31730000 20495000 3363200 1817000 676610 17125000 1844600 10264 1252 8782 62720;62721;62722;62723;62724;62725;62726;62727 39998;39999;40000;40001 40001 4 VTSSITIYPSDSSSPR Unmodified 1695.8315 0.83154427 196 A0A024RAC0;Q86V48-2;Q86V48-3;Q86V48 LUZP1 Leucine zipper protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 47.739 48.066 2 0.023018 17782 20181213_JW_Orientia_Karp_1_1 98.531 50.687 31968000 8567700 8737800 9627500 0 1245300 0 875890 2913400 10265 196 8783 62728;62729;62730;62731;62732;62733 40002;40003 40002 2 VTTVASHTSDSDVPSGVTEVVVK Unmodified 2313.17 0.16998504 1584 P10909-4;P10909;P10909-5;P10909-2;H0YAS8;B4DW11;H0YC35;P10909-3 CLU Clusterin;Clusterin beta chain;Clusterin alpha chain;Clusterin yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.8 47.11 3 0.022437 16594 20181213_JW_Orientia_Karp_1_3 66.308 33.619 156050000 57041000 53295000 28459000 0 6594000 0 2464600 8192800 10266 1584 8784 62734;62735;62736;62737;62738;62739 40004;40005 40005 2 VTVAGLAGK Unmodified 814.49125 0.49125301 1956 V9HWC2;Q99497;K7ELW0 HEL-S-67p;PARK7 Protein deglycase DJ-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.822 37.152 2 0.0090785 11412 20181213_JW_Orientia_Karp_1_2 95.909 32.762 35036000 11251000 11064000 2139000 0 3318200 1129700 5490200 644880 10267 1956 8785 62740;62741;62742;62743;62744;62745;62746 40006;40007;40008;40009;40010;40011 40006 6 VTVFPIGIGDR Unmodified 1172.6554 0.65535823 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 63.085 63.387 2 4.4752E-09 27411 20181213_JW_Orientia_Karp_1_2 196.52 148.86 86035000 0 34282000 28795000 317090 10588000 6021100 0 6031600 10268 1466;1549 8786 62747;62748;62749;62750;62751;62752;62753 40012;40013;40014;40015;40016 40013 5 VTVLFAGQHIAK Unmodified 1282.7398 0.73975656 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 42.933 43.263 2 0.0098344 15170 20181213_JW_Orientia_Karp_1_1 98.048 57.019 33379000 8712100 15456000 4603200 1279700 0 0 3327500 0 10269 1615 8787 62754;62755;62756;62757;62758 40017;40018;40019 40017 3 VTVLFAGQHISK Unmodified 1298.7347 0.73467118 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 42.261 42.605 2 0.0080581 13077 20181213_JW_Orientia_Karp_3_2 100.93 63.204 52166000 10029000 21268000 9594900 2335000 0 513260 7342100 1084400 10270 1520 8788 62759;62760;62761;62762;62763;62764;62765 40020;40021;40022;40023 40023 4 VTWAPPPSIDLTNFLVR Unmodified 1925.0411 0.041083539 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 75.217 75.237 2 0.0048443 35055 20181213_JW_Orientia_Karp_1_1 101.43 72.186 638330000 215790000 106210000 186790000 32122000 31269000 18385000 47005000 754190 10271 85 8789 62766;62767;62768;62769;62770;62771;62772;62773 40024;40025;40026;40027;40028;40029 40024 6 VTYCPTEPGNYIINIK Deamidation (NQ) 1881.9183 0.91825079 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91;H0Y5C6 FLNA;FLJ00119 Filamin-A yes no 0 1 0 0 By MS/MS By matching 1 1 60.103 60.358 2 0.0022697 25784 20181213_JW_Orientia_Karp_1_1 124.86 65.315 13165000 12647000 0 0 0 0 0 0 517450 10272 1615 8790 62774;62775 40030 40030 1082 1 VTYCPTEPGNYIINIK Unmodified 1880.9342 0.93423521 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;Q2VP91;H0Y5C6 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 59.585 60.035 2 0.02527 25402 20181213_JW_Orientia_Karp_1_2 80.245 48.767 24535000 0 21368000 0 1127300 0 0 2039000 0 10273 1615 8790 62776;62777;62778 40031 40031 1 VTYTPMAPGSYLISIK Oxidation (M) 1755.9117 0.91170885 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4E2F9;Q86TQ3 FLNA;FLJ00119 Filamin-A yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 61.834 62.144 2 0.00015566 27029 20181213_JW_Orientia_Karp_1_1 145.09 58.741 148880000 39757000 51736000 36864000 0 9655900 0 3387400 7482300 10274 1615 8791 62779;62780;62781;62782;62783;62784 40032;40033;40034;40035 40032 1241 4 VTYTPMAPGSYLISIK Unmodified 1739.9168 0.91679423 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4E2F9;Q86TQ3 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 66.681 66.857 2 0.00090128 29858 20181213_JW_Orientia_Karp_1_1 129.34 87.654 73000000 24171000 18615000 22229000 2437400 0 1937100 0 3610200 10275 1615 8791 62785;62786;62787;62788;62789;62790 40036;40037;40038;40039;40040 40036 5 VVAAPQRPGTEPQPEMPDTVLQSETLK Unmodified 2917.4855 0.48552229 840 D3DVQ1;O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes no 0 0 0 1 By MS/MS By matching 1 1 53.684 53.783 3 0.0090114 21732 20181213_JW_Orientia_Karp_1_1 60.86 33.453 43438000 19816000 0 23622000 0 0 0 0 0 10276 840 8792 62791;62792 40041 40041 1 VVAAPQRPGTEPQPEMPDTVLQSETLK Oxidation (M) 2933.4804 0.48043692 840 D3DVQ1;O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes no 0 0 1 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 48.498 48.741 3 0.00084499 17750 20181213_JW_Orientia_Karp_1_3 94.955 66.538 26545000 7063100 0 10378000 0 3606700 2261000 0 3235700 10277 840 8792 62793;62794;62795;62796;62797 40042 40042 483 1 VVAPTISSPVCQEQLVEAGR Unmodified 2139.0994 0.099403054 2016 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 1 57.217 57.567 2 0.03329 23819 20181213_JW_Orientia_Karp_1_2 62.861 22.748 5753300 0 5753300 0 0 0 0 0 0 10278 2016 8793 62798 40043 40043 1 VVASGPGLEHGK Unmodified 1149.6142 0.6142217 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 23.875 24.219 2 0.00070841 5379 20181213_JW_Orientia_Karp_1_3 142.98 102.91 10352000 2781000 2471600 2095500 458170 313640 0 1557600 674620 10279 1520 8794 62799;62800;62801;62802;62803;62804;62805 40044;40045;40046 40045 3 VVDALGNAIDGK Unmodified 1170.6245 0.62445203 1628 V9HW26;P25705-2;P25705;K7EK77;B4DGW3;K7ENJ4;K7ERX7;K7EJP1;K7EQH4 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 46.317 46.634 2 0.00090503 15688 20181213_JW_Orientia_Karp_2_1 136.53 93.284 199600000 38733000 51794000 60847000 25313000 0 22451000 462140 0 10280 1628 8795 62806;62807;62808;62809;62810;62811 40047;40048;40049;40050 40048 4 VVDAVGNPIDGK Unmodified 1182.6245 0.62445203 1380 Karp_02117 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 1 1 42.491 42.791 2 0.00056694 14214 20181213_JW_Orientia_Karp_1_3 147.62 104.34 718580000 336400000 145330000 118500000 33594000 23715000 0 61035000 0 10281 1380 8796 62812;62813;62814;62815;62816;62817;62818;62819;62820 40051;40052;40053;40054;40055;40056 40052 6 VVDDISQLEPSEK Unmodified 1457.725 0.72495394 1430 Karp_02387 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.802 49.147 2 2.2404E-11 18494 20181213_JW_Orientia_Karp_1_1 202 131.27 100950000 20769000 24778000 21578000 13556000 5799500 8829300 194010 5443800 10282 1430 8797 62821;62822;62823;62824;62825;62826;62827;62828 40057;40058;40059;40060;40061;40062 40057 6 VVDLLAPYAK Unmodified 1087.6277 0.6277465 1560 Q0QEN7;V9HW31;P06576;H0YH81;F8W079 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 57.167 57.469 2 0.007779 23737 20181213_JW_Orientia_Karp_1_2 97.431 68.282 61622000 22035000 15742000 7033000 807370 3979600 6433800 0 5591900 10283 1560 8798 62829;62830;62831;62832;62833;62834;62835 40063;40064;40065 40063 3 VVDYFSSEANDDDAILNIEK Unmodified 2256.0434 0.043387542 1127 Karp_00330 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.395 67.597 2 2.2443E-128 29715 20181213_JW_Orientia_Karp_1_3 321.82 261.46 388290000 101730000 49391000 92828000 0 32380000 46624000 33589000 31745000 10284 1127 8799 62836;62837;62838;62839;62840;62841;62842 40066;40067;40068;40069;40070;40071;40072;40073;40074;40075;40076;40077 40069 12 VVDYFSSEANDDDAILNIEK Deamidation (NQ) 2257.0274 0.027403127 1127 Karp_00330 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 69.867 70.009 2 1.6635E-11 32025 20181213_JW_Orientia_Karp_1_2 175.27 131.97 67588000 11137000 15432000 0 0 0 11068000 26396000 3554800 10285 1127 8799 62843;62844;62845;62846;62847;62848;62849;62850;62851;62852 40078;40079;40080;40081;40082;40083;40084;40085;40086 40078 516 9 VVEAEYEDIDKK Unmodified 1436.7035 0.70349021 1074 Karp_00050 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 33.911 34.245 3 0.0014319 9678 20181213_JW_Orientia_Karp_3_1 148.13 100.01 1580900000 218200000 176790000 1061800000 62826000 0 677770 60620000 0 10286 1074 8800 62853;62854;62855;62856;62857;62858 40087;40088;40089;40090;40091;40092 40092 6 VVEHPEFLK Unmodified 1096.5917 0.59169534 716 B7Z2X4;B7Z992;P06396-2;Q5T0I0 GSN Gelsolin yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 36.468 36.731 3 0.041482 10135 20181213_JW_Orientia_Karp_2_2 60.828 27.084 20270000 11663000 0 0 3268000 4270000 1069600 0 0 10287 716 8801 62859;62860;62861;62862 40093 40093 1 VVEIDDEVVIVDIK Unmodified 1583.8658 0.86580451 1095 Karp_00244 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 68.172 68.379 2 1.9248E-07 30484 20181213_JW_Orientia_Karp_1_2 180.18 116.77 68605000 12882000 5966500 12262000 6593200 9350700 4840000 10110000 6600500 10288 1095 8802 62863;62864;62865;62866;62867;62868;62869;62870 40094;40095;40096;40097;40098 40096 5 VVELLHHNQLIIK Unmodified 1554.9246 0.92459722 1149 Karp_00508 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 43.967 44.233 4 0.022551 15295 20181213_JW_Orientia_Karp_1_2 69.261 44.748 21787000 8137400 6182100 0 7467600 0 0 0 0 10289 1149 8803 62871;62872;62873 40099;40100 40100 2 VVESGEDIVLQCAVNEGSGPITYK Unmodified 2563.2476 0.24758343 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;B7Z8U8 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 62.842 63.118 3 5.3585E-07 26834 20181213_JW_Orientia_Karp_1_3 151.06 120.97 111180000 32598000 28920000 34475000 1520600 8625500 0 0 5039200 10290 274 8804 62874;62875;62876;62877;62878;62879 40101;40102;40103 40102 3 VVESGEDIVLQCAVNEGSGPITYK Deamidation (NQ) 2564.2316 0.23159902 274 B7Z8Y6;A0A075B738;P16284-5;P16284-4;P16284-6;P16284;P16284-3;P16284-2;B7Z8U8 PECAM1 Platelet endothelial cell adhesion molecule yes no 0 1 0 0 By MS/MS By matching 1 1 62.504 62.834 3 0.0186 24686 20181213_JW_Orientia_Karp_2_3 66.853 39.133 5861600 0 0 0 0 0 5313200 0 548310 10291 274 8804 62880;62881 40104 40104 104 0 VVFQEFR Unmodified 923.4865 0.48650199 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 46.168 46.445 2 0.01544 16260 20181213_JW_Orientia_Karp_1_3 111.01 30.63 540480000 176040000 214360000 133700000 10827000 3201900 0 0 2349300 10292 47 8805 62882;62883;62884;62885;62886;62887 40105;40106;40107;40108 40107 4 VVGAVIDQGLITR Unmodified 1339.7823 0.78234966 903 E9PLD3;L0R588;E9PRG8 C11orf48;C11orf98 Uncharacterized protein C11orf98 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 55.743 55.954 2 0.0023636 22381 20181213_JW_Orientia_Karp_1_3 122.55 79.25 100010000 28295000 31850000 28834000 0 5210600 5819700 0 0 10293 903 8806 62888;62889;62890;62891;62892 40109;40110;40111 40111 3 VVGGFVDQK Unmodified 947.50763 0.50763136 1172 Karp_00626 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 36.486 36.843 2 0.00077827 11788 20181213_JW_Orientia_Karp_1_1 147.19 65.401 690330000 307640000 154580000 101580000 13399000 28468000 11237000 59717000 13704000 10294 1172 8807 62893;62894;62895;62896;62897;62898;62899;62900 40112;40113;40114;40115;40116;40117;40118;40119 40112 8 VVGGSISLVR Unmodified 985.59203 0.59202969 1150 Karp_00511 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.308 45.498 2 0.0010552 15895 20181213_JW_Orientia_Karp_1_2 123.21 70.805 507330000 159830000 136420000 99219000 0 111550000 315750 0 0 10295 1150 8808 62901;62902;62903;62904;62905 40120;40121;40122 40121 3 VVGRNGESSELDLQGIR Deamidation (NQ) 1828.9279 0.92790427 941 F8W031;F8W1K5;F8VXJ7;Q9Y2B0;H0YI18 CNPY2 Protein canopy homolog 2 yes no 0 1 0 1 By MS/MS 1 46.574 47.084 3 0.011725 15030 20181213_JW_Orientia_Karp_3_2 98.508 45.616 9904600 0 0 0 0 0 0 0 9904600 10296 941 8809 62906 40123 40123 328 1 VVGSSGTQEASVLVTIQQR Unmodified 1958.0433 0.043268383 195 A0A024RAB6;P98160;Q59EG0 HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein;Endorepellin;LG3 peptide yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 2 2 1 1 1 53.589 53.846 2;3 0.0018316 21740 20181213_JW_Orientia_Karp_1_1 123.76 50.292 62968000 18311000 29527000 12140000 0 1414500 0 1575900 0 10297 195 8810 62907;62908;62909;62910;62911;62912;62913 40124;40125 40124 1 VVHIMDFQR Unmodified 1143.5859 0.58589846 418 D6REM6;A8MXP9;P43243;D6R991;Q68D11;Q5CZA7;B4DF66;B3KM87;B4DRS1;P43243-2;D6RAM9;D6RAY2;D6RBI2;D6RE02;D6RIA2;H0Y8T4 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 0 0 0 0 By MS/MS 1 42.91 43.108 3 0.022053 14418 20181213_JW_Orientia_Karp_1_3 76.679 46.115 0 0 0 0 0 0 0 0 0 10298 418 8811 62914 40126 40126 1 VVIEGQTVDFQCEAK Unmodified 1721.8294 0.82943578 1927 Q92626;H7C1W1;Q92626-2 PXDN Peroxidasin homolog yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 51.221 51.541 2 7.0509E-06 20152 20181213_JW_Orientia_Karp_1_1 164.92 101.3 24274000 12933000 10333000 0 0 0 0 0 1008000 10299 1927 8812 62915;62916;62917 40127;40128;40129;40130 40127 4 VVIGMDVAASEFFR Oxidation (M) 1555.7705 0.77046434 93 A0A024R4F1;P06733;E2DRY6;P06733-2 ENO1 Alpha-enolase;Enolase yes no 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 63.908 64.14 2 0.0008702 25211 20181213_JW_Orientia_Karp_2_3 134.75 100.79 57085000 15501000 10017000 5099900 2864400 13176000 6512600 952090 2962200 10300 93 8813 62918;62919;62920;62921;62922;62923;62924;62925 40131;40132;40133;40134;40135;40136;40137 40135 101 7 VVLAGGVAPALFR Unmodified 1268.7605 0.760492 928 F5H1C6;Q86UX7-2;Q86UX7 FERMT3 Fermitin family homolog 3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 63.787 63.997 2 0.0006193 28205 20181213_JW_Orientia_Karp_1_1 150.28 92.679 21016000 10450000 4701600 3525000 304930 0 1069800 0 964270 10301 928 8814 62926;62927;62928;62929;62930;62931 40138;40139;40140 40138 3 VVLAYEPVWAIGTGK Unmodified 1601.8817 0.88172935 1715 V9HWK1;Q53HE2;P60174-1;P60174;B4DUI5;P60174-4;U3KPZ0;Q2QD09;U3KQF3 HEL-S-49;TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.92 69.077 2 0.0032894 27138 20181213_JW_Orientia_Karp_3_2 115.57 71.678 128010000 14914000 15493000 19746000 2774600 19558000 13463000 29802000 12256000 10302 1715 8815 62932;62933;62934;62935;62936;62937;62938;62939 40141;40142;40143;40144;40145;40146;40147 40147 7 VVLIGGKPDR Unmodified 1052.6342 0.63422886 63 Q5T6W5;B4DUQ1;A0A024R228;Q6IBN1;P61978-3;P61978;P61978-2;Q5EC54;Q5T6W2;B4DFF1;Q5T6W1 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 32.395 32.669 3 0.015491 9132 20181213_JW_Orientia_Karp_1_3 87.258 53.297 39312000 0 24994000 14318000 0 0 0 0 0 10303 63 8816 62940;62941;62942;62943 40148;40149;40150 40148 3 VVLNGPTMLNVTGNVYVDK Deamidation (NQ) 2033.0503 0.050327596 1193 Karp_00798 yes yes 0 1 0 0 By matching By MS/MS By matching 1 1 1 67.474 67.624 2 0.007393 29938 20181213_JW_Orientia_Karp_1_2 99.796 49.329 18762000 9593800 3395800 5772900 0 0 0 0 0 10304 1193 8817 62944;62945;62946 40151 40151 610 1 VVLNGPTMLNVTGNVYVDK Oxidation (M);Deamidation (NQ) 2049.0452 0.045242218 1193 Karp_00798 yes yes 0 1 1 0 By matching By MS/MS 1 1 61.144 61.623 2 0.0066763 22832 20181213_JW_Orientia_Karp_3_2 98.552 65.348 3825800 0 0 0 1874200 0 0 0 1951600 10305 1193 8817 62947;62948 40152 40152 610 761 1 VVLPIEAPIR Unmodified 1105.6859 0.68593008 1 B2YKU2;Q14XT3;H9E7F7;H9E7P8;H9E7W2;H9E7T7;X5C6M5;X5BKA4;X2CK15;X2C841;W8DFH5;W8DBX9;W8D4U9;W8D1X2;V9K571;V9JPM6;V9J3S1;V9J3C6;V9J128;U5Z9R9;U5Z487;U3LSI8;U3L556;T1SWS8;T1Q632;S4STI1;R9Y478;R9Y412;Q9B2U8;Q9B138;Q8WCW3;Q8HNR1;Q85KS0;Q7YCE6;Q7Y6N0;Q7Y6M3;Q7Y626;Q6VJJ3;Q6VJD8;Q6VIG7;Q6RQ80;Q6RNN7;Q6RKW8;Q6R0V6;Q5SB08;Q5SAP1;Q5SA98;Q5S971;Q4GVP5;Q4GQP0;Q4GHE1;Q4GCZ4;Q4GCG2;Q4GCC3;Q4F4V6;Q4EZD4;Q305H0;Q19MP7;Q15HH9;Q0Z7S0;Q0Z7J0;Q0Z7F1;Q09U41;Q06TE6;N0BMC4;L7XQ86;L7XMG0;K9M370;K7X9X2;J7FG21;I6UIH6;I6PZI4;I6PRP7;I6N6Q6;I3Q4M2;I3PYD8;I2E7Z7;H9T3W9;H9SA70;H9S868;H9RV93;H9RKS9;H9RJL3;H9RF01;H9RD12;H9RAX1;H9RA87;H9QLC8;H9QH59;H9Q9T5;H9PMX8;H9PDV6;H9MK30;H9M675;H9LMC2;H9E7D1;G9LKX8;G9LHJ5;G9LG51;G9LB98;G8JF18;G5D8Q5;G4W3U1;F2WJ84;F2WI31;F1CIN6;F1AZF2;F1AZ87;E7E4E0;E7CNQ9;E5FWC0;E5EWR3;E5EWL4;E5EWG2;E5E1A6;E5E079;E5DZN4;E2JFC4;D2IKF4;D1G421;C8YBL1;C8Y3Q5;C8Y3G4;C8XWJ6;C5H6M7;C5H6M5;C5H6M4;C5H6M3;C5H6L3;B5M7M0;B3DE06;B2XL43;B2XIR3;B2XHT9;B2WRY8;B2CB37;B1W855;A7LFA2;A7LF11;A6ZFK3;A6ZF47;A6ZEU4;A6Z3M5;A6YW54;A1Z455;A0SA07;A0S3T1;A0A068IXK4;A0A068BY99;A0A059SAH5;A0A059S242;A0A059RZV1;A0A059RX67;A0A059RVU8;A0A059RTZ6;A0A059RSL1;A0A059RR09;A0A059RQT0;A0A059RPV8;A0A059RNV8;A0A059RNF8;A0A059RLH3;A0A059RKX5;A0A059RKP1;A0A059RJF0;A0A059RIZ2;A0A059RIQ8;A0A059RIK5;A0A059RI53;A0A059RHY7;A0A059RFY4;A0A059R1T0;A0A059QVH0;A0A059QTW9;A0A059QS59;A0A059QQA7;A0A059QPT6;A0A059QPR4;A0A059QPE9;A0A059QLX8;A0A059QI72;A0A023QZ25;P00403;X2D546;X2D544;X2D537;X2D4V5;X2D4V3;X2D4U5;X2D4U2;X2D4K6;X2D4F2;X2D4E2;X2D4D6;X2D3Z8;X2D3Z7;X2D3Z6;A0A059QM31;A0A059RTG7;A0A059QNV4;E2DTL8;G3CA49;K7WVJ5;V9JD22;Q8HNR6;Q7YEH2;Q0Z7K3;Q0Z7D8;L7NVC9;G8JE99;G5D8N2;G5D8K6;G5D8J3;G5D8C8;G5D863;G4W3M6;C5H6M8;B3GUF3;A0A059RRG1;A0A059RQ10;A0A059RHR2;Q5XRW8;Q4GW12;J7HPF9;H9S5Y2;H9S054;H9PWQ9;F2WGV2;E9P659;E7CM18;E5E1V1;E0AF97;C5H6K7;C5H6K6;C5H6K5;B2XP28;A6ZHA9;A0S2P1;A0A059S8A4;A0A059S2S6;A0A059RUP9;A0A059RRR2;A0A059RQQ2;A0A059RQI1;A0A059RP05;A0A059RMK0;A0A059RI85;A0A059QPY9;A0A059QPU3;A0A059QPE7;A0A059RUZ1;H9STE0;D3WYY8;K7WG81 COX2;COII;MT-CO2;cox2 Cytochrome c oxidase subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 60.51 60.797 2 0.0166 26270 20181213_JW_Orientia_Karp_1_1 86.136 67.36 129450000 59656000 30606000 21282000 1742800 6092800 6969500 0 3097000 10306 1 8818 62949;62950;62951;62952;62953;62954;62955 40153;40154;40155 40153 3 VVLVLAGR Unmodified 825.54362 0.54362294 57 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ERY7 RPL27 60S ribosomal protein L27 yes no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 48.558 48.808 2 0.0081645 16999 20181213_JW_Orientia_Karp_2_3 109.7 52.251 18579000 4822200 5912800 1310800 4085600 1123000 1324800 0 0 10307 57 8819 62956;62957;62958;62959;62960;62961;62962 40156;40157;40158 40158 3 VVNPVGIEVLNTEK Unmodified 1509.8403 0.84025847 1059 Karp_00003 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 57.419 57.765 2 5.2976E-25 21876 20181213_JW_Orientia_Karp_2_1 226.42 155.6 590500000 251130000 85684000 106510000 36019000 44056000 33022000 6092200 27995000 10308 1059 8820 62963;62964;62965;62966;62967;62968;62969;62970 40159;40160;40161;40162;40163;40164;40165;40166 40162 8 VVNYIAR Unmodified 833.47594 0.4759373 1365 Karp_01875 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 33.553 33.886 2 0.020952 10301 20181213_JW_Orientia_Karp_1_1 101.21 38.233 160460000 59026000 38270000 51378000 5052600 0 2691900 4043900 0 10309 1365 8821 62971;62972;62973;62974;62975;62976 40167 40167 1 VVPEEDMPFLEDGTVVDIVLNPLGLPAR Oxidation (M) 3049.5682 0.56818929 1170 Karp_00624 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 77.967 77.936 3 8.5067E-11 36613 20181213_JW_Orientia_Karp_1_3 136.96 108.32 113690000 24131000 12716000 7294900 8488500 12412000 8660400 38953000 1037000 10310 1170 8822 62977;62978;62979;62980;62981;62982;62983;62984 40168;40169;40170;40171;40172;40173;40174 40170 722 7 VVQEHLPLMSEAGAGLPDMEAV 2 Oxidation (M);Deamidation (NQ) 2325.0868 0.086849036 880 E7EVI8 CXXC5 yes yes 0 1 2 0 By MS/MS 1 45.248 45.899 3 0.037322 15233 20181213_JW_Orientia_Karp_3_1 44.089 17.496 6355000 0 0 0 0 0 0 6355000 0 10311 880 8823 62985 40175 40175 1694 1 VVRPDSELGERPPEDNQSFQYDHEAFLGK Unmodified 3358.5854 0.58544735 1805 V9HW95;Q15293 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 0 2 By MS/MS By matching 1 1 47.986 48.437 4 0.0034781 16918 20181213_JW_Orientia_Karp_2_3 63.728 47.964 8623900 0 0 0 0 0 7586800 1037000 0 10312 1805 8824 62986;62987 40176 40176 1 VVSEVDIAK Unmodified 958.53351 0.53351176 1611 P20591;F8W8T1;P20591-2;H9KVC7;H9KVC9;H9KVD0;H9KVC4;H9KVD3;H9KVC3 MX1 Interferon-induced GTP-binding protein Mx1;Interferon-induced GTP-binding protein Mx1, N-terminally processed yes no 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 37.511 37.856 2 0.0050312 12205 20181213_JW_Orientia_Karp_1_1 104.06 59.94 93856000 20708000 24363000 38926000 1759800 2842200 946450 3087700 1223000 10313 1611 8825 62988;62989;62990;62991;62992;62993;62994;62995 40177;40178 40177 2 VVSGMVNCNDDQGVLLGR Oxidation (M) 1947.9142 0.91424482 582 B4DIT7;V9HWG3;P21980;B4DTN7;P21980-2;A2A299;P21980-3 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 1 0 By matching By MS/MS 1 1 48.027 48.507 2 0.021215 15759 20181213_JW_Orientia_Karp_3_2 76.357 45.794 10335000 0 6191600 0 0 0 0 0 4143900 10314 582 8826 62996;62997 40179 40179 356 1 VVSLDSFR Unmodified 921.49198 0.4919813 1181 Karp_00658 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 48.717 49.034 2 0.0089188 16938 20181213_JW_Orientia_Karp_2_1 107.29 70.9 52416000 0 0 0 28374000 9418200 14624000 0 0 10315 1181 8827 62998;62999;63000;63001;63002 40180;40181;40182;40183;40184 40182 5 VVSQYHELVVQAR Unmodified 1526.8205 0.82052608 592 B4DS66;B4DKR1;Q16891-2;Q16891;H7C463;C9J406;B9A067;B4DQY2;Q16891-3;Q16891-4 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 38.185 38.455 3 0.0066606 12216 20181213_JW_Orientia_Karp_1_2 104.94 76.503 83233000 25684000 19103000 32515000 0 1407000 0 4524500 0 10316 592 8828 63003;63004;63005;63006;63007 40185;40186;40187 40186 3 VVSSLQQEIWEEEDLNR Unmodified 2073.0015 0.0014631481 839 D3DVC4;P48681;Q05BW3;A5PKT9 NES Nestin yes no 0 0 0 0 By MS/MS By matching 1 1 60.498 60.772 2 1.3676E-06 25845 20181213_JW_Orientia_Karp_1_2 159.13 95.655 7351800 0 4458100 2893700 0 0 0 0 0 10317 839 8829 63008;63009 40188 40188 1 VVSTHEQVLR Unmodified 1166.6408 0.6407708 790 CON__P02533;P02533;A0A024R1X6 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 25.612 26.152 3 0.01727 5157 20181213_JW_Orientia_Karp_3_2 77.533 1.881 12585000 0 0 0 1639100 1111800 0 6182700 3651200 + 10318 790 8830 63010;63011;63012;63013 40189 40189 1 VVSVLPASQDNELMLITSSGK Unmodified 2187.1457 0.14568454 1139 Karp_00451 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 69.715 69.79 2 0.0086207 31101 20181213_JW_Orientia_Karp_1_3 109.48 78.25 6951000 4681200 2269800 0 0 0 0 0 0 10319 1139 8831 63014;63015;63016 40190;40191 40191 2 VVTAMLPYLTDK Unmodified 1349.7265 0.72647426 1276 Karp_01108 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.685 62.901 2 1.3995E-05 24725 20181213_JW_Orientia_Karp_2_1 176.48 130.48 203970000 71322000 40306000 60702000 2738900 15705000 13199000 0 0 10320 1276 8832 63017;63018;63019;63020;63021;63022;63023 40192;40193;40194;40195;40196;40197;40198 40195 7 VVTGVANALAHR Unmodified 1206.6833 0.68330431 812 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 35.795 36.094 3 0.0034318 10923 20181213_JW_Orientia_Karp_1_2 98.898 48.094 40287000 20054000 10080000 5080100 0 0 0 5072400 0 + 10321 812 8833 63024;63025;63026;63027 40199;40200;40201 40200 3 VVTLYPYTSQK Unmodified 1297.6918 0.69180331 1016 I3L1X2;Q9P2A4-2;Q9P2A4 ABI3 ABI gene family member 3 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 47.863 48.235 2 0.042461 17605 20181213_JW_Orientia_Karp_1_2 85.731 50.286 16694000 0 6978000 3271500 4269000 304200 0 0 1871200 10322 1016 8834 63028;63029;63030;63031;63032 40202 40202 1 VVTNYNSAHDQNSNLLIEYFR Unmodified 2496.2034 0.20335085 582 B4DIT7;V9HWG3;P21980;P21980-2 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 59.028 59.211 3 0.025625 25249 20181213_JW_Orientia_Karp_1_1 64.843 32.216 79432000 22574000 37853000 19004000 0 0 0 0 0 10323 582 8835 63033;63034;63035 40203;40204 40203 2 VVTPLSPPTNLHLEANPDTGVLTVSWER Unmodified 3041.5822 0.58219987 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7 FN1;DKFZp686O12165 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.997 71.097 3 5.5143E-05 32330 20181213_JW_Orientia_Karp_1_2 99.219 77.871 354720000 107020000 80839000 57798000 0 37161000 17831000 54063000 0 10324 85 8836 63036;63037;63038;63039;63040;63041 40205;40206;40207;40208;40209;40210;40211;40212;40213 40208 9 VVTTFSDYDAQILK Unmodified 1598.8192 0.81918867 1290 Karp_01163 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 59.393 59.668 2 0.019567 25122 20181213_JW_Orientia_Karp_1_2 85.973 43.109 145830000 38645000 47513000 59343000 0 0 0 326910 0 10325 1290 8837 63042;63043;63044;63045 40214 40214 1 VVTYGMANLLTGPK Oxidation (M) 1478.7803 0.78030075 60 A0A024R1Z6;Q99536;Q99536-3;B3KUF8;Q99536-2;K7ESA3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 50.81 51.175 2 0.025633 19907 20181213_JW_Orientia_Karp_1_1 77.597 31.135 25819000 11896000 0 9302000 0 0 0 3504800 1115500 10326 60 8838 63046;63047;63048;63049 40215;40216 40215 63 2 VVVAENFDEIVNNENK Unmodified 1831.8952 0.89520716 516 B3KQT9;V9HVY3;P30101;B3KQT2;B4DJ98;B4DDM1 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 2 1 2 1 2 56.971 57.285 2;3 0.00076947 23242 20181213_JW_Orientia_Karp_1_3 131.08 75.825 102690000 30705000 0 25366000 8415400 20955000 7678200 0 9568200 10327 516 8839 63050;63051;63052;63053;63054;63055;63056;63057;63058 40217;40218 40217 2 VVVIYNNK Unmodified 947.54402 0.54401687 1375 Karp_02111 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 2 1 1 1 1 35.621 35.979 2 0.0043151 11294 20181213_JW_Orientia_Karp_1_1 132.96 91.931 988150000 286740000 294180000 214490000 55201000 1217700 27454000 75650000 33211000 10328 1375 8840 63059;63060;63061;63062;63063;63064;63065;63066;63067 40219;40220;40221;40222;40223;40224 40219 6 VVVIYNNK Deamidation (NQ) 948.52803 0.52803245 1375 Karp_02111 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 2 2 3 3 2 1 39.603 39.891 1;2 0.0062908 11732 20181213_JW_Orientia_Karp_2_1 153.88 109.77 662970000 140250000 231580000 114410000 52979000 26273000 12538000 82236000 2704800 10329 1375 8840 63068;63069;63070;63071;63072;63073;63074;63075;63076;63077;63078;63079;63080;63081;63082;63083;63084;63085;63086 40225;40226;40227;40228;40229;40230;40231;40232;40233 40229 870 8 VVVLPFPSK Unmodified 984.6008 0.60080346 816 CON__Q58D62 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 57.985 58.278 2 0.014552 20651 20181213_JW_Orientia_Karp_3_2 87.476 39.193 229990000 150850000 0 7748900 1950700 14485000 47815000 0 7134300 + 10330 816 8841 63087;63088;63089;63090;63091;63092 40234;40235 40235 2 VVVNLNTNLQK Unmodified 1240.7139 0.71393574 1112 Karp_00294 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 45.274 45.619 2 1.9296E-05 16406 20181213_JW_Orientia_Karp_1_1 169.76 74.409 99235000 26654000 26989000 26686000 6868500 0 8968800 1441200 1627400 10331 1112 8842 63093;63094;63095;63096;63097;63098;63099;63100 40236;40237;40238;40239;40240;40241;40242;40243 40236 8 VVYDNANNISSTEVK Unmodified 1651.8053 0.80532952 1272 Karp_01080 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.237 40.582 2 3.2747E-49 13146 20181213_JW_Orientia_Karp_1_2 267.23 173.68 384400000 69397000 68199000 74635000 29172000 0 18582000 68358000 56058000 10332 1272 8843 63101;63102;63103;63104;63105;63106;63107 40244;40245;40246;40247;40248;40249;40250 40245 7 VVYDNANNISSTEVK Deamidation (NQ) 1652.7893 0.78934511 1272 Karp_01080 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 3 1 2 2 42.827 43.183 2 5.1011E-62 14464 20181213_JW_Orientia_Karp_1_1 275.35 204.94 325620000 53640000 61761000 57967000 75145000 0 1795300 56564000 18752000 10333 1272 8843 63108;63109;63110;63111;63112;63113;63114;63115;63116;63117;63118;63119;63120;63121 40251;40252;40253;40254;40255;40256;40257;40258;40259;40260;40261;40262 40251 689;690;691 12 VVYDNANNISSTEVK 2 Deamidation (NQ) 1653.7734 0.77336069 1272 Karp_01080 yes yes 0 2 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 3 3 2 3 2 2 44.99 45.318 2 1.0686E-05 15454 20181213_JW_Orientia_Karp_1_3 168.89 123.06 100070000 16564000 16663000 30435000 5844700 6935900 10311000 5562400 7758000 10334 1272 8843 63122;63123;63124;63125;63126;63127;63128;63129;63130;63131;63132;63133;63134;63135;63136;63137;63138;63139 40263;40264;40265;40266;40267;40268 40264 689;690;691 6 VVYNVLSELEK Unmodified 1291.7024 0.702368 683 C9JBL0;B4E2B9;H7BYP4;E9PHV6;U5Y1J8;U5Y3U3;U5Y3L1;Q53TD0;Q9H930-3;Q9H930-1;P23497-7;P23497-6;P23497-5;P23497-2;Q9H930-2;Q9H930;P23497-3;P23497;P23497-4 SP100;SP140L Nuclear body protein SP140-like protein;Nuclear autoantigen Sp-100 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 60.761 60.861 2 0.00096594 26158 20181213_JW_Orientia_Karp_1_1 129.88 75.093 25237000 14967000 0 10270000 0 0 0 0 0 10335 683 8844 63140;63141 40269;40270 40269 2 VVYSPVDGTRPSESIVVPGNTR Unmodified 2328.2074 0.2073736 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.236 50.543 3 0.00034769 18971 20181213_JW_Orientia_Karp_1_3 114.9 84.862 141250000 24208000 36696000 37783000 14425000 8255100 9372700 10508000 0 10336 852 8845 63142;63143;63144;63145;63146;63147;63148 40271;40272;40273;40274;40275;40276;40277 40273 7 VVYTGTYDTEGVTPTK Unmodified 1729.841 0.84104633 744 B8ZZB8;Q96F85-2;Q96F85 CNRIP1 CB1 cannabinoid receptor-interacting protein 1 yes no 0 0 0 0 By MS/MS 1 45.278 45.476 2 3.3317E-28 15705 20181213_JW_Orientia_Karp_1_3 237.53 177.47 8661900 0 0 8661900 0 0 0 0 0 10337 744 8846 63149 40278 40278 1 VVYVFNEALLSK Unmodified 1380.7653 0.76530261 1213 Karp_00875 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 63.161 63.42 2 0.0077501 25029 20181213_JW_Orientia_Karp_2_1 111.52 63.011 47820000 16436000 10199000 8571100 1191400 4965700 4774600 0 1682200 10338 1213 8847 63150;63151;63152;63153;63154;63155;63156 40279;40280;40281;40282;40283 40281 5 VWAHYEEQPVEEVMPVLEEK Unmodified 2440.1621 0.16206289 451 B2R5U1;B4E299;B3KU67;Q59FF0;Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 0 0 0 0 By matching By MS/MS 1 1 61.148 61.323 3 8.7111E-06 26219 20181213_JW_Orientia_Karp_1_2 142.88 110.25 28305000 9848000 18457000 0 0 0 0 0 0 10339 451 8848 63157;63158 40284 40284 1 VWGNVGENVK Unmodified 1100.5615 0.56145784 1127 Karp_00330 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 38.813 39.145 2 0.00034122 12934 20181213_JW_Orientia_Karp_1_1 140.11 90.754 153370000 73197000 33144000 22281000 7321700 3327400 3378900 8807300 1914100 10340 1127 8849 63159;63160;63161;63162;63163;63164;63165;63166 40285;40286;40287;40288;40289 40285 5 VWLDPNETNEIANANSR Unmodified 1941.9181 0.91806787 1038 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8;J3QL15 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 55.801 56.101 2 2.5107E-06 22767 20181213_JW_Orientia_Karp_1_2 156.96 119.53 44202000 11108000 18733000 10481000 0 0 0 3880100 0 10341 1038 8850 63167;63168;63169;63170 40290;40291;40292;40293 40291 4 VWLEVEPVGMLK Oxidation (M) 1414.753 0.75302336 79 B2R642;A0A024R3I5;P43121;A8K6A6;B3KXZ9;P43121-2 MCAM Cell surface glycoprotein MUC18 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 63.118 63.414 2 5.0987E-06 27491 20181213_JW_Orientia_Karp_1_2 178.55 122.98 127030000 39342000 25917000 22756000 2868500 13186000 15928000 395590 6641000 10342 79 8851 63171;63172;63173;63174;63175;63176;63177;63178;63179 40294;40295;40296;40297;40298;40299;40300;40301;40302;40303 40296 84 10 VWLEVEPVGMLK Unmodified 1398.7581 0.75810874 79 B2R642;A0A024R3I5;P43121;A8K6A6;B3KXZ9;P43121-2 MCAM Cell surface glycoprotein MUC18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 69.109 69.253 2 2.7362E-07 30845 20181213_JW_Orientia_Karp_1_3 183.67 105.52 116440000 32797000 17589000 15558000 0 11124000 6670600 21209000 11494000 10343 79 8851 63180;63181;63182;63183;63184;63185;63186 40304;40305;40306;40307;40308;40309;40310;40311;40312 40308 9 VWSPLVTEEGK Unmodified 1243.6449 0.64485312 1487 V9HW92;O00151 HEL-S-112;PDLIM1 PDZ and LIM domain protein 1 yes no 0 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 52.234 52.535 2 0.00042169 18845 20181213_JW_Orientia_Karp_2_1 144.65 92.701 170060000 52226000 20796000 23124000 30188000 17737000 24700000 0 1286100 10344 1487 8852 63187;63188;63189;63190;63191;63192;63193 40313;40314;40315;40316 40315 4 VWTSGQVEEYDLDADDINSR Unmodified 2311.024 0.024049084 192 Q6JSD7;Q6JSD8;B4DW35;B4DPF5;B4DVA2;B4E3E3;B4DNW4;B4F4P6;B2R6P2;A0A024RA31;B4E220;K7N7A8;P29972-4;P29972-2;P29972-3;P29972 AQP1 Aquaporin-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 58.669 58.919 2 8.8287E-61 24330 20181213_JW_Orientia_Karp_1_3 284.53 240.16 45341000 9292600 14922000 13389000 4020500 3717800 0 0 0 10345 192 8853 63194;63195;63196;63197;63198 40317;40318;40319;40320;40321 40318 5 VYADEVTYPMHVILR Unmodified 1804.9182 0.91819121 1421 Karp_02305 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.282 59.492 3 0.0018263 25013 20181213_JW_Orientia_Karp_1_2 107.65 84.843 91872000 33593000 16615000 25954000 0 8368900 7340300 0 0 10346 1421 8854 63199;63200;63201;63202;63203 40322;40323;40324;40325;40326 40323 5 VYALPEDLVEVKPK Unmodified 1598.892 0.89195969 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;B4DG31;A7E2S2;B4DI60 PLS3 Plastin-3 yes no 0 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 55.072 55.392 3 0.015927 22356 20181213_JW_Orientia_Karp_1_2 98.942 74.068 153960000 0 45112000 84340000 2370500 10904000 11232000 0 0 10347 623 8855 63204;63205;63206;63207;63208 40327 40327 1 VYDFIAGK Unmodified 911.47527 0.4752686 1412 Karp_02231 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.719 48.02 2 0.0047583 17184 20181213_JW_Orientia_Karp_1_3 126.28 72.724 89811000 26909000 22540000 13207000 12718000 5816600 5652700 0 2968200 10348 1412 8856 63209;63210;63211;63212;63213;63214;63215 40328;40329;40330;40331;40332;40333;40334 40331 7 VYDFIAK Unmodified 854.4538 0.45380487 1411 Karp_02230 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 45.999 46.232 2 0.041897 16343 20181213_JW_Orientia_Karp_1_2 82.305 22.664 84362000 18351000 36478000 22650000 3069400 1878800 1934700 0 0 10349 1411 8857 63216;63217;63218;63219;63220;63221 40335 40335 1 VYDPSTSTLNVR Unmodified 1350.6779 0.67794416 852 D6RGG3;Q99715-4;Q99715;B9EJB8;Q99715-2;H0Y4P7 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 43.779 44.109 2 0.0038513 15577 20181213_JW_Orientia_Karp_1_1 112.94 68.628 88076000 25817000 19593000 27059000 2576300 3066600 0 7466200 2497400 10350 852 8858 63222;63223;63224;63225;63226;63227;63228 40336;40337;40338 40336 3 VYDQMTEPK Oxidation (M) 1125.5012 0.50122535 1406 Karp_02222 yes yes 0 0 1 0 By MS/MS 1 24.171 24.421 2 0.0080349 5484 20181213_JW_Orientia_Karp_1_2 120.31 63.674 0 0 0 0 0 0 0 0 0 10351 1406 8859 63229 40339 40339 1015 1 VYEAIDIVR Unmodified 1076.5866 0.58660996 1334 Karp_01374 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 51.687 51.987 2 0.013094 20449 20181213_JW_Orientia_Karp_1_1 88.37 45.455 100760000 32140000 39771000 25695000 0 0 0 3153000 0 10352 1334 8860 63230;63231;63232;63233 40340 40340 1 VYEDSGIPLPAESPK Unmodified 1600.7985 0.79845323 942 F8W038;F8W1H0;H0YIS7;Q8IXM2-2;Q8IXM2;Q8IXM2-3 C17orf49;RNASEK-C17orf49;BAP18 Chromatin complexes subunit BAP18 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 53.72 54.078 2 5.879E-06 21821 20181213_JW_Orientia_Karp_1_1 167.44 125.9 106680000 38953000 14455000 24096000 9936700 8381200 6744400 3089300 1027800 10353 942 8861 63234;63235;63236;63237;63238;63239;63240;63241 40341;40342;40343;40344;40345 40341 5 VYELELSVR Unmodified 1106.5972 0.59717465 1219 Karp_00886 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.804 54.184 2 0.00015099 21320 20181213_JW_Orientia_Karp_1_3 178.94 107.56 230630000 44892000 73218000 0 32498000 27100000 43239000 1478600 8201900 10354 1219 8862 63242;63243;63244;63245;63246;63247;63248;63249 40346;40347;40348;40349;40350;40351;40352;40353 40348 8 VYENYPTYDLTER Unmodified 1661.7573 0.7573167 1655 P35659;B4DFG0;B4DNW3;P35659-2;H0Y993;Q6MZJ9 DEK;DKFZp686A24118 Protein DEK yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.782 51.141 2 0.00058448 19378 20181213_JW_Orientia_Karp_1_3 160.56 86.659 94985000 39657000 19912000 14153000 5786500 6720300 0 7412700 1344500 10355 1655 8863 63250;63251;63252;63253;63254;63255;63256 40354;40355;40356;40357;40358;40359 40356 6 VYFAAEDTDCCTR Unmodified 1606.6392 0.63919217 758 C9J0H3;C9JE06;C9J7K9;O15162-2;O15162 PLSCR1 Phospholipid scramblase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 42.526 42.926 2 1.5697E-12 14313 20181213_JW_Orientia_Karp_1_3 209.97 171.22 11962000 0 4326100 5206900 0 0 0 2429000 0 10356 758 8864 63257;63258;63259 40360;40361;40362 40361 3 VYFATEK Unmodified 856.43307 0.43306943 1108 Karp_00286 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 33.95 34.315 1;2 0.01304 8879 20181213_JW_Orientia_Karp_2_2 114.02 48.351 1464100000 555420000 265520000 232500000 64402000 157470000 36695000 105430000 46708000 10357 1108 8865 63260;63261;63262;63263;63264;63265;63266;63267;63268;63269;63270;63271;63272;63273;63274 40363;40364;40365;40366;40367;40368;40369;40370;40371;40372 40367 10 VYFQSPPGAAGEGPGGADDEGPVR Unmodified 2329.0611 0.061103292 1935 Q96C90;A0A024R563 PPP1R14B Protein phosphatase 1 regulatory subunit 14B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 2 51.765 52.102 2;3 7.1241E-08 18949 20181213_JW_Orientia_Karp_2_3 143.14 103.9 93394000 9815200 13715000 14596000 20432000 16711000 9938000 8187600 0 10358 1935 8866 63275;63276;63277;63278;63279;63280;63281;63282;63283;63284;63285;63286 40373;40374;40375;40376;40377;40378 40377 6 VYFQSPPGAAGEGPGGADDEGPVRR Unmodified 2485.1622 0.16221432 1935 Q96C90;A0A024R563 PPP1R14B Protein phosphatase 1 regulatory subunit 14B yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.394 45.714 3 0.00044177 15811 20181213_JW_Orientia_Karp_1_3 97.256 82.708 246450000 32953000 63515000 42327000 24289000 23712000 19589000 13901000 26168000 10359 1935 8867 63287;63288;63289;63290;63291;63292;63293;63294 40379;40380;40381;40382;40383;40384;40385;40386;40387;40388 40382 10 VYGLSNAYSGEILQFSTGTK Unmodified 2134.0582 0.058249745 1380 Karp_02117 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 66.922 67.059 2 5.228E-48 29938 20181213_JW_Orientia_Karp_1_1 292.76 234.88 29941000 13156000 9708800 0 2849500 0 4226400 0 0 10360 1380 8868 63295;63296;63297;63298 40389 40389 1 VYGPGVAK Unmodified 789.43849 0.43848916 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 27.569 27.942 2 0.030652 7472 20181213_JW_Orientia_Karp_1_1 82.263 47.37 64453000 19106000 11653000 26769000 80756 887920 0 3461700 2494600 10361 1615 8869 63299;63300;63301;63302;63303;63304;63305 40390 40390 1 VYIASSSGSTAIK Unmodified 1282.6769 0.67688153 1519 V9HW48;O75368 HEL-S-115;SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.124 37.524 2 0.000852 10900 20181213_JW_Orientia_Karp_2_1 144.55 100.41 36364000 0 9354200 6183200 8257300 5785900 0 6783600 0 10362 1519 8870 63306;63307;63308;63309;63310 40391;40392;40393 40391 3 VYIYDPIK Unmodified 1009.5484 0.54843354 1329 Karp_01364 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.3 52.57 2 0.017914 19110 20181213_JW_Orientia_Karp_2_3 91.041 54.281 32896000 13145000 5535300 5479500 3719200 0 5016800 0 0 10363 1329 8871 63311;63312;63313;63314;63315 40394 40394 1 VYLWQVDSNGK Deamidation (NQ) 1308.635 0.63501672 1424 Karp_02310 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 58.393 58.671 2 0.00088749 24791 20181213_JW_Orientia_Karp_1_1 141.91 93.115 68723000 32430000 27859000 0 0 6790900 0 0 1642600 10364 1424 8872 63316;63317;63318;63319;63320;63321 40395;40396;40397;40398;40399 40395 942 5 VYNLLQEIEK Unmodified 1247.6762 0.67615325 1241 Karp_00908 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 60.21 60.503 2 4.9361E-12 25670 20181213_JW_Orientia_Karp_1_2 212.03 50.766 971190000 281720000 306350000 137270000 36064000 112970000 91848000 4964800 0 10365 1241 8873 63322;63323;63324;63325;63326;63327;63328 40400;40401;40402;40403;40404;40405;40406 40401 7 VYNNPECK Unmodified 1022.4491 0.4491302 1455 Karp_02592 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 20.863 21.113 2 0.014899 4152 20181213_JW_Orientia_Karp_3_1 95.909 47.736 4162000 1478500 0 1327400 587190 0 324850 444010 0 10366 1455 8874 63329;63330;63331;63332;63333 40407 40407 1 VYNSVTQSLR Deamidation (NQ) 1166.5932 0.5931519 1239 Karp_00906 yes yes 0 1 0 0 By MS/MS By matching By matching By matching 1 1 1 1 40.239 40.579 2 0.0191 13615 20181213_JW_Orientia_Karp_1_1 92.538 40.057 41151000 9378800 0 12059000 0 0 0 15091000 4621900 10367 1239 8875 63334;63335;63336;63337 40408 40408 640 1 VYNSVTQSLR Unmodified 1165.6091 0.60913632 1239 Karp_00906 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.794 37.206 2 8.8526E-07 11406 20181213_JW_Orientia_Karp_1_2 187.99 124.46 132390000 0 56362000 40018000 0 12861000 0 14097000 9047600 10368 1239 8875 63338;63339;63340;63341;63342;63343 40409;40410;40411;40412;40413;40414 40409 6 VYSIYVHTVCDPLFEAVGK Unmodified 2196.0925 0.092526762 1766 Q2TNI1;Q03135;E9PCT5;A9XTE5;Q59E85;C9JKI3;Q7Z4F3;A0A024R757;Q03135-2 CAV1 Caveolin;Caveolin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 63.63 63.831 3 5.0091E-05 27994 20181213_JW_Orientia_Karp_1_1 132.25 100.96 136590000 30193000 36580000 35447000 1140600 18586000 9775800 0 4866800 10369 1766 8876 63344;63345;63346;63347;63348;63349;63350 40415;40416;40417;40418;40419 40415 5 VYSVLSDR Unmodified 937.4869 0.48689592 18 A0A024QZN2;Q8WXX5 hCG_2024613;DNAJC9 DnaJ homolog subfamily C member 9 yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 39.851 40.121 2 0.030691 13485 20181213_JW_Orientia_Karp_1_1 82.241 51.737 61481000 20532000 19968000 11121000 0 2978700 0 6881300 0 10370 18 8877 63351;63352;63353;63354;63355 40420 40420 1 VYTELWNSQIK Unmodified 1379.7085 0.70851601 1070 Karp_00041 yes yes 0 0 0 0 By MS/MS 1 53.872 53.872 2 0.011333 21745 20181213_JW_Orientia_Karp_1_1 113.93 45.269 0 0 0 0 0 0 0 0 0 10371 1070 8878 63356 40421 40421 1 VYTGLVDK Unmodified 893.48583 0.48583328 1182 Karp_00659 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.021 37.311 2 0.0041872 11373 20181213_JW_Orientia_Karp_1_3 141.52 44.045 219240000 112750000 36032000 22895000 0 16872000 0 30691000 0 10372 1182 8879 63357;63358;63359;63360;63361;63362 40422;40423;40424;40425;40426;40427 40424 6 VYVGNLGNNGNK Deamidation (NQ) 1248.6099 0.6098646 456 B2R6F3;P84103-2;P84103 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 38.494 38.744 2 4.1248E-07 12692 20181213_JW_Orientia_Karp_1_1 185.72 129.29 39197000 11656000 12895000 5813100 6538000 2295700 0 0 0 10373 456 8880 63363;63364;63365;63366;63367;63368 40428;40429 40428 177 2 VYVGNLGTGAGK Unmodified 1134.6033 0.60332266 558 B4DEK2;C9JAB2;Q16629-3;Q16629-2;Q16629-4;Q16629;Q8NB80 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 38.62 38.92 2 0.0038791 11267 20181213_JW_Orientia_Karp_2_2 112.83 59.482 94814000 0 66173000 8996300 11150000 4420100 4074900 0 0 10374 558 8881 63369;63370;63371;63372;63373 40430 40430 1 VYVVSFPMDK Oxidation (M) 1199.5896 0.58964643 1310 Karp_01252 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 2 1 51.906 52.222 2 6.1814E-05 18755 20181213_JW_Orientia_Karp_2_2 150.36 105.28 352660000 91010000 52769000 94814000 0 48534000 62584000 1500000 1451200 10375 1310 8882 63374;63375;63376;63377;63378;63379;63380;63381 40431;40432;40433;40434;40435;40436 40435 863 6 VYVVSFPMDK Unmodified 1183.5947 0.59473181 1310 Karp_01252 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 58.241 58.451 2 0.007765 24328 20181213_JW_Orientia_Karp_1_2 110.87 74.476 218830000 75832000 54643000 58358000 0 15312000 14688000 0 0 10376 1310 8882 63382;63383;63384;63385;63386 40437;40438 40437 2 VYYTAGYNSPVK Unmodified 1360.6663 0.66631685 1771 Q05DB4;Q9Y5Z4;Q9Y5Z4-2 HEBP2 Heme-binding protein 2 yes no 0 0 0 0 By MS/MS 1 41.857 42.367 2 0.020279 12989 20181213_JW_Orientia_Karp_3_2 108.47 67.742 0 0 0 0 0 0 0 0 0 10377 1771 8883 63387 40439 40439 1 WAALEVDYEIYGK Unmodified 1555.7559 0.75586013 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 65.307 65.481 2 0.0016786 28709 20181213_JW_Orientia_Karp_1_2 132.78 74.943 0 0 0 0 0 0 0 0 0 10378 1118 8884 63388;63389 40440;40441 40440 2 WAAVVVPSGQEQR Unmodified 1425.7365 0.7364621 267;709;857;1906;2066;915 I7GYF8;E9RJS6;E1Y6P6;X5JZ45;W8YSA8;W8FKE1;W1ICE9;V6CI97;U3MLI1;S5FMM0;S5DU09;S5DU05;S5DN76;S5DN70;S5DN66;S5DLG2;S5DLF7;S5DLF2;S5DI32;S5DI31;S5DHQ8;S5DHQ4;R9RIA4;R9RH57;R9RH45;R9RH39;R4RWU8;Q8MHM5;M9ZV78;I7JB69;I7HBP7;I2GUK7;I1V5E9;G9MD19;G9I1P6;G0WJF1;F6KVT8;F2XI56;E9LMN8;E3Q1I7;E3Q1I5;E3Q0Y3;E1Y7F7;E1XUP6;E0WN45;E0WN44;C7EW73;C7C619;B5MA82;A7LH95;A6YQG8;E0WMP9;F5A4J5;E9NPN4;D9UAZ8;D9UAZ7;D9UAZ3;C7EDP3;C1K9J2;C0KTQ6;C0KTQ5;I6R1M9;H2B3F1;G1C120;A0A060VCV6;A0A060VCU7;A8YQF3;E3Q1I0;X5MI27;V5NSW9;V5NQY7;V5NQX7;V5NQV6;V5NQT2;V5NQQ5;V5NQD6;V5NQD2;V5NQ93;F6IQL8;F6IQL7;F6IQL6;F6IQL5;F6IQL4;F6IQL3;F6IQL2;F6IQL0;F6IQK9;F6IQK8;F6IQK7;F6IQK6;F6IQK5;F6IQK4;F6IQK3;F6IQK2;F6IQK1;F6IQJ9;F6IQJ8;F6IQJ7;B9WPN5;W1I435;Q95HC2;Q5C9P9;G1FTT7;D0AB34;B5BLP2;B3WFP3;B0JF23;A8YQF2;A6Q0R3;A6H581;A6H578;V5NQV1;S6B6S2;Q860B0;Q85ZX8;Q7YQB2;Q6R742;Q6R739;Q64EU5;Q3KT81;Q27W00;Q001S2;O19617;I2G9F8;H2B3H3;F1CZ00;D6CJC1;D3K0R2;C1K0Y0;C1K0X8;C1K0X7;B2ZSE2;A4Q9R6;A0A060VHI0;A0A060VD27;A0A060VD03;A0A060VCX7;A2AEA2;B4DVY0;P10321;I2GUK3;S5DI27;S5DHR2;F8LSV7;F4NC98;S5DU12;S5DU01;E9ABX9;D9UAX0;C7EAN4;F2XI57;Q8SNB1;B4E316;V5NRE1;V5NQY2;F6IQM1;F6IQL1;F6IQM0;F6IQK0;V5NQW1;A7WPJ2;Q6IVK0;F5CL10;A0A060VHI5;E0WMY7;B1PQ27;A0A068W643;W1EC24;A0A060CZ20;I7EQF7;A7MAE1;X5CHJ2;X2J3V4;W8YM39;W8E988;W6SQV0;W6SNC0;W0T236;W0FF27;V9VYY9;U6EV21;U5XMI1;U4QB70;T2MJ84;T1WQ06;T1RT90;S5NIY1;S0F3H7;S0F0M8;R9WAS6;R9RVK4;Q8MHP8;Q8MHP7;Q75WB6;Q75NJ3;Q6L6R5;Q6F3I9;Q68Y63;Q60I39;Q5W9R8;Q5R1M0;Q5EPE9;Q546Q4;Q546F7;Q540M3;Q4VYE6;Q4LAU0;Q308P3;N1NSY8;N0GWB7;N0AAA5;M5AUI8;M4VSA0;M4VMS8;M4VLP5;M4QNU4;M1KQ42;L7XDT5;L7XDE9;L7WM55;I7HAR2;I6Z8E6;I6QTM5;I2GUK0;I2GUJ9;I2G8B5;I1VXM3;I1VXL9;H9BE43;H9BB16;G9IHU5;G8GBV1;G8GBV0;G8FQ52;G0M6G2;F5BZ30;F5ATC5;F4ZZU3;E9ABI2;E5BBI6;E3UM70;E3Q1V2;E2GD50;E0WMV7;E0WMV2;D7GLM1;D5L6G2;D5H3I6;D3YLL2;D2KZ31;D2KZ29;D2KZ27;D1H0T8;C6L835;B9W1S7;B6ECH5;B5A516;B3V990;B0LV24;A7WPI9;A7LKN0;A6N9E1;A5A4L6;A4UUL3;A0A061CVW2;I2GAD7;F0VRV9;D5H3V7;D5H3U0;D5H3T3;Q8WLS4;A5I8L1;U5YMN5;U5YMN1;U5YMG9;U5YMG4;U5YMF9;U5YKE8;U5YKE0;U5YJM1;U5YJI7;U5YJI3;U5YJG6;H2DDR7;F6IQV5;F6IQV4;F6IQV3;F6IQV2;F6IQV1;F6IQV0;F6IQU9;F6IQU8;F6IQT2;F6IQS9;F6IQS6;F6IQS5;F6IQS4;F6IQS3;F6IQS2;F6IQS1;B0BKZ4;A5PHT6;X5MPH1;X5MNS3;A0A060VHG8;A0A060VHD9;A0A060VG17;Q861F7;Q861F6;Q8HX85;O78126;O19642;W1I6E7;S6FW97;S6AU97;Q9TQB6;Q9TQ73;Q9TQ65;Q704F3;Q53Z42;Q3LRR6;Q2LC95;P79603;I6YAY1;G9FXD6;E5FQ49;D9UB09;D9UB07;D7GNM8;D5H3T6;D5H3T4;D5H3T1;C5IWX9;C5IWX5;B2LT55;A5A4G3;P01892;Q6L6T0;Q0P6N9;E0WMM9;D7GNM3;D3YFD3;R9WXA9;W8NKY4;G3C9V4;S5T475;Q9BD14;Q95IB1;Q4VYU3;Q206J8;N1NUT9;M9TME2;M1XK38;D7NMJ8;D1H0T5;B0LV25;V9W2L5;V5NE49;V5L197;Q6L6Q3;Q6L6P9;Q6L676;Q4W6C5;Q4W6C3;M9R0Q6;M4VMS3;M4VJS4;M4NJR5;I7ARY8;I3VB20;H2D5G1;G9HRQ8;G9G815;G9FTK1;G4XZE8;F8WSJ2;F8WS75;F2XI29;E3WH34;D2KZ35;D2KZ30;D1J6X4;B1Q4W3;B1Q4R7;B1B727;B1B6Q5;B1B6Q4;A8ILL3;L7WQ81;A0A061A7U0;T1WGK5;K4TZQ2;G1UK07;F2X5P6;D3YLL1;D2KZ37;B2DFV9;A2V815;Q29757;Q06FC3;Q4JLV8;Q6VS85;D5H3T7;U5YKC3;F6IQS8;F6IQS7;U5YJN4;U5YJP4;U5YJN8;F6IQT1;U5YMP0;U5YMH5;U5YKE3;U5YJP1;U5YJJ1;F6IQU6;F6IQU5;F6IQU4;F6IQU3;F6IQU2;F6IQU1;F6IQU0;F6IQT9;F6IQT8;F6IQT7;F6IQT6;F6IQT5;F6IQT3;U5YJH8;F6IQU7;A0A060VHF3;X5MBH5;A0A060VG36;A0A060VD05;Q8WUX3;D0V481;A0A060VHE9;I3ZN76;Q95J05;Q8HWQ9;Q8HWQ8;Q5MAG5;C5IWY8;C5IWX6;Q3LRR7;D7GM34;Q52QV5;P10316;Q6F3H0;L0N4J2;I7D6N7;I7CT52;I7C6A9;D2KZ54;B3GUH8;N1NT54;M4RBI8;M1JPA6;L7XEN4;J7RT43;J7JQD3;D6CIC3;S6A6J7;F6IQT4;A0A060VG23;Q9GJ24;Q52YL7;A5JUX0;E5FQ45;R9RI97;Q95IZ1;F8KA50;Q7YP23;Q9GJP2;Q9GJ61;Q7YNY0;Q7YNX7;A2BCQ5;D7GN81;D7GN80;A5A8M7;B0BF01;B7XGC2;D9IDV1;Q8MHN8;C8ZLL1;X2L7S8;Q29945 HLA-C;HLA-Cw;HLA;HLA-A;MHC class I HLA-A;HLA-A*0226;HLA-A*02;HLA-A*0201V3 HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 48.392 48.93 2 0.010439 16006 20181213_JW_Orientia_Karp_3_2 105.4 0 63985000 0 55632000 0 0 0 0 138740 8213800 10379 915;267;709;857;1906;2066 8885 63390;63391;63392;63393;63394 40442;40443;40444;40445 40445 4 WAGTEIK Unmodified 803.41775 0.41775372 1297 Karp_01188 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 34.426 34.689 2 0.025139 10370 20181213_JW_Orientia_Karp_1_1 95.793 21.276 345490000 344210000 0 0 747840 292300 244120 0 0 10380 1297 8886 63395;63396;63397;63398 40446 40446 1 WAIAQLNYADMLK Unmodified 1535.7806 0.7806351 1796 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By matching By MS/MS 1 1 70.851 70.975 2 0.01807 31977 20181213_JW_Orientia_Karp_1_3 87.568 50.884 6213600 0 3725000 2488600 0 0 0 0 0 10381 1796 8887 63399;63400 40447 40447 1 WASGSFLEDGDK Unmodified 1310.5779 0.57789577 1395 Karp_02151 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 50.47 50.777 2 0.00066062 19658 20181213_JW_Orientia_Karp_1_1 144.55 60.903 111860000 33348000 22646000 20398000 11541000 5322400 12139000 6465100 0 10382 1395 8888 63401;63402;63403;63404;63405;63406;63407 40448;40449;40450;40451;40452 40448 5 WDAWNELK Unmodified 1060.4978 0.49779495 742 B8ZWD1;B8ZWD8;A0A024RAF2;B8ZWD9;P07108;P07108-3;P07108-2;P07108-4;P07108-5 DBI Acyl-CoA-binding protein yes no 0 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.856 55.136 2 0.030361 20509 20181213_JW_Orientia_Karp_2_3 82.426 31.46 50915000 3419500 21522000 0 17272000 3135700 5566300 0 0 10383 742 8889 63408;63409;63410;63411;63412 40453 40453 1 WEAAEGLLQEALDK Unmodified 1571.7831 0.78313752 1478 Q7Z4Z1;Q53HJ6;M0QXB4;O14579-2;O14579 COPE Coatomer subunit epsilon yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 67.823 68.01 2 0.015535 30492 20181213_JW_Orientia_Karp_1_1 89.46 50.706 9357900 2649600 0 0 1937500 2632100 0 2138700 0 10384 1478 8890 63413;63414;63415;63416 40454 40454 1 WEGLVYAPPGK Unmodified 1215.6288 0.62880913 2009 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 54.242 54.508 2 0.014063 22117 20181213_JW_Orientia_Karp_1_1 89.08 47.39 92983000 32070000 16704000 34076000 2963600 2008600 5160200 0 0 10385 2009 8891 63417;63418;63419;63420;63421;63422 40455;40456 40455 2 WEVAHVSEMKQMNLTTGK Acetyl (Protein N-term);Oxidation (M) 2146.0187 0.018709892 1985 Q9NR21-2 yes yes 1 0 1 1 By MS/MS 1 62.894 63.092 3 0.017752 26847 20181213_JW_Orientia_Karp_1_3 64.52 30.217 39958000 0 0 39958000 0 0 0 0 0 10386 1985 8892 63423 40457 40457 1526 0 WGSENVDDNNQLFR 2 Deamidation (NQ) 1694.7172 0.7172428 723 Q69YG3;H0YES2;Q9NXA5;B7Z5R5;Q5TB30-2;Q5TB30 DKFZp434K0831;DEPDC1 DEP domain-containing protein 1A yes no 0 2 0 0 By MS/MS 1 82.629 82.577 3 0.041582 33484 20181213_JW_Orientia_Karp_2_1 63.602 13.501 102350 0 0 0 102350 0 0 0 0 10387 723 8893 63424 40458 40458 1608 0 WHAADYILEIEK Unmodified 1486.7456 0.7456298 1188 Karp_00703 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 55.951 56.403 2 0.031965 23020 20181213_JW_Orientia_Karp_1_2 78.513 28.159 76179000 0 30306000 42187000 0 0 0 1448100 2237400 10388 1188 8894 63425;63426;63427;63428 40459 40459 1 WHVVASMSTR Oxidation (M) 1188.571 0.57097667 546 Q0VGE6;B3KXL7;Q6TDP4 KLHL17 Kelch-like protein 17 yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS 1 1 1 2 61.029 61.443 2 0.010043 23736 20181213_JW_Orientia_Karp_2_3 89.55 8.2535 217560000 0 327370 0 815230 0 159740000 0 56679000 10389 546 8895 63429;63430;63431;63432;63433 40460;40461;40462 40460 343 3 WIINSAANR Unmodified 1043.5512 0.55122751 1093 Karp_00242 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 43.516 43.783 2 0.0013863 15487 20181213_JW_Orientia_Karp_1_1 126.24 66.223 481300000 136070000 126190000 92705000 0 68017000 18453000 39857000 0 10390 1093 8896 63434;63435;63436;63437;63438;63439 40463;40464;40465;40466 40463 4 WISIMTER Unmodified 1034.5219 0.52190122 124 V9HW65;A0A024R5Z7;P07355;P07355-2;H0YN42;H0YMD0;H0YMU9;A6NMY6;H0YM50;H0YNP5;B3KRQ1;H0YN28;H0YL33 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.674 53.94 2 0.0052141 21186 20181213_JW_Orientia_Karp_1_3 119.41 58.619 353190000 176250000 74603000 59868000 15438000 9807400 17228000 0 0 10391 124 8897 63440;63441;63442;63443;63444;63445 40467;40468;40469;40470;40471;40472 40469 6 WKEELIQESLDTIDHLK Unmodified 2096.079 0.078985188 1451 Karp_02532 yes yes 0 0 0 1 By matching By MS/MS 1 1 62.112 62.367 4 0.0093725 23213 20181213_JW_Orientia_Karp_3_2 94.569 48.321 39264000 35861000 0 0 0 0 0 0 3402300 10392 1451 8898 63446;63447 40473 40473 1 WKPQITSQLSK Unmodified 1314.7296 0.7295858 1178 Karp_00644 yes yes 0 0 0 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 38.643 38.843 3 0.014601 12373 20181213_JW_Orientia_Karp_1_2 89.356 60.111 293410000 60242000 156730000 64441000 0 0 11996000 0 0 10393 1178 8899 63448;63449;63450;63451 40474;40475;40476 40475 3 WLGGMLTNWVTVSK Oxidation (M) 1606.8177 0.81774888 1347 Karp_01523 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.67 67.871 2 1.1052E-07 23852 20181213_JW_Orientia_Karp_3_1 184.87 126.36 49908000 10178000 7129200 6732100 0 8963300 5326500 6533900 5045400 10394 1347 8900 63452;63453;63454;63455;63456;63457;63458 40477;40478;40479;40480;40481;40482;40483;40484;40485;40486 40484 919 10 WLIELAAER Unmodified 1099.6026 0.60259438 1133 Karp_00399 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 63.586 63.789 2 0.0012378 24756 20181213_JW_Orientia_Karp_2_2 128.36 34.764 21980000 0 0 14156000 0 4099000 2259200 0 1465200 10395 1133 8901 63459;63460;63461;63462;63463 40487;40488;40489;40490;40491 40489 5 WLLGMKNNQSKSANSTLR Oxidation (M);3 Deamidation (NQ) 2066.0103 0.010253695 950 G1UI16;Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 3 1 2 By MS/MS 1 67.063 67.311 2 0.032853 26867 20181213_JW_Orientia_Karp_2_1 64.827 13.814 0 0 0 0 0 0 0 0 0 10396 950 8902 63464 40492 40492 1729 1 WLPSSSPVTGYR Unmodified 1348.6776 0.67755023 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;A6YID7 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 50.504 50.866 2 0.0088979 19715 20181213_JW_Orientia_Karp_1_1 99.568 49.853 353270000 118140000 110150000 60798000 0 0 0 54217000 9965300 10397 85 8903 63465;63466;63467;63468;63469 40493;40494;40495;40496 40493 4 WLQSILDDLDK Unmodified 1344.6925 0.6925316 1192 Karp_00723 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 71.727 71.805 2 0.0002685 29245 20181213_JW_Orientia_Karp_2_3 163.12 102.68 51251000 10057000 8509800 8234000 2030600 7355900 3167000 11896000 0 10398 1192 8904 63470;63471;63472;63473;63474;63475;63476 40497;40498;40499;40500;40501;40502;40503 40502 7 WNTDNTLGTEITVEDQLAR Unmodified 2175.0444 0.044390595 1616 P21796;B3KTS5;C9JI87 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 63.428 63.578 2 7.5341E-07 27629 20181213_JW_Orientia_Karp_1_2 192.32 143.85 18175000 6546500 5401200 6227200 0 0 0 0 0 10399 1616 8905 63477;63478;63479 40504;40505 40505 1 WQHDLFDSGFGGGAGVETGGK Unmodified 2120.9552 0.95518166 886 E9PB61;Q86V81 ALYREF THO complex subunit 4 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 55.288 55.555 3 0.012128 20630 20181213_JW_Orientia_Karp_2_1 72.167 30.965 47597000 9010200 6526800 12302000 4825200 10068000 4864500 0 0 10400 886 8906 63480;63481;63482;63483;63484;63485 40506;40507;40508;40509 40508 4 WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK Unmodified 3470.7106 0.71064786 856 D9IAI1;P30086;B4DRT4 HEL-S-34;PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 60.607 60.935 4 0.029018 23383 20181213_JW_Orientia_Karp_2_2 40.037 23.415 63756000 30396000 0 0 0 21796000 0 1094800 10470000 10401 856 8907 63486;63487;63488;63489 40510 40510 1 WSRPQAPITGYR Unmodified 1430.7419 0.74188183 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.157 39.467 3 0.015957 12461 20181213_JW_Orientia_Karp_1_3 89.356 43.441 457800000 208030000 93279000 96742000 0 12611000 0 39424000 7711500 10402 85 8908 63490;63491;63492;63493;63494;63495 40511 40511 1 WTCPCVCTGSSTR Unmodified 1570.6327 0.63266701 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 40.009 40.309 2 0.0011839 13525 20181213_JW_Orientia_Karp_1_1 136.49 103.26 22051000 6194000 4376900 6867000 0 0 0 4613500 0 10403 1466;1549 8909 63496;63497;63498;63499 40512;40513 40512 2 WTEYGLTFTEK Unmodified 1373.6503 0.65033243 1616 P21796;B3KTS5;C9JI87 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 57.039 57.369 2 0.0098733 23305 20181213_JW_Orientia_Karp_1_3 96.171 56.323 70954000 16528000 19180000 15608000 0 6056500 7658000 920550 5002600 10404 1616 8910 63500;63501;63502;63503;63504;63505;63506 40514;40515;40516;40517 40514 4 WTLLQEQGTK Unmodified 1202.6295 0.62953741 799;341;679;793;805 B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;B4E1T1;CON__P04259;P04259;B4DKV4;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;B2R853;B4DRY0 KRT6A;KRT6B;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 0 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 48.896 49.241 2 1.1991E-06 17273 20181213_JW_Orientia_Karp_2_3 185.33 100.41 302500000 39264000 43230000 25286000 68066000 23012000 35514000 149460 67983000 + 10405 341;679;793;799;805 8911 63507;63508;63509;63510;63511;63512;63513;63514 40518;40519;40520;40521 40521 4 YAALFLNSDFPINEGDYCR Unmodified 2264.0208 0.020818382 1126 Karp_00329 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 72.549 72.631 2 1.7269E-06 33365 20181213_JW_Orientia_Karp_1_1 171.11 124.9 89107000 26543000 24647000 16171000 0 0 0 19054000 2692800 10406 1126 8912 63515;63516;63517;63518;63519 40522 40522 1 YAAQEMDDAFVAVVADYMK 2 Oxidation (M) 2167.9442 0.94420754 1178 Karp_00644 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.211 65.395 2 0.0002475 28542 20181213_JW_Orientia_Karp_1_2 119.92 91.133 56270000 15984000 9898900 14195000 0 5580000 4088600 6523100 0 10407 1178 8913 63520;63521;63522;63523;63524;63525 40523;40524;40525;40526;40527;40528;40529;40530;40531 40526 748;749 9 YAAQEMDDAFVAVVADYMK Oxidation (M) 2151.9493 0.94929292 1178 Karp_00644 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 2 3 1 72.569 72.622 2;3 4.1646E-07 33145 20181213_JW_Orientia_Karp_1_1 156.29 128.88 294150000 124990000 39186000 51853000 10054000 16274000 11566000 33575000 6647700 10408 1178 8913 63526;63527;63528;63529;63530;63531;63532;63533;63534;63535;63536;63537;63538;63539;63540;63541;63542;63543 40532;40533;40534;40535;40536;40537;40538;40539;40540;40541;40542;40543 40532 748;749 11 YADLPGIAR Unmodified 974.51853 0.5185304 930 V9HW58;Q53H88;F5H2S7;Q13561;Q13561-3;Q13561-2;F8W1I6;F8VW18;F8VRV7;F8W0U6 HEL-S-77;DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.434 47.736 2 0.014192 16486 20181213_JW_Orientia_Karp_2_3 87.696 48.444 61174000 7290300 16212000 11035000 8972200 1612500 11535000 0 4516700 10409 930 8914 63544;63545;63546;63547;63548;63549;63550 40544;40545;40546;40547;40548;40549 40548 6 YADLTEDQLPSCESLK Unmodified 1867.851 0.85095909 1608 Q6P6D7;Q6FHU2;Q53G35;P18669;B4DMJ7;B4DKL5;Q0D2Q6;Q6FHK8 PGAM1;hCG_2015269 Phosphoglycerate mutase;Phosphoglycerate mutase 1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 53.781 53.931 2 1.6814E-06 21676 20181213_JW_Orientia_Karp_1_1 172.33 129.78 55534000 18471000 0 23873000 0 0 13190000 0 0 10410 1608 8915 63551;63552;63553 40550 40550 1 YAEGYINK Unmodified 956.46035 0.46034682 1140 Karp_00452 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 31.476 31.82 2 0.0050914 8483 20181213_JW_Orientia_Karp_3_1 137.18 82.974 75641000 11828000 39004000 15348000 0 2551100 0 5071000 1838300 10411 1140 8916 63554;63555;63556;63557;63558;63559;63560 40551;40552;40553;40554;40555 40554 5 YAEWQTVAQCPVPQFSGKEPSAWK 3 Deamidation (NQ) 2796.2741 0.27413253 1979 Q9HBY0 NOX3 NADPH oxidase 3 yes yes 0 3 0 1 By MS/MS 1 50.866 51.518 3 0.042196 17653 20181213_JW_Orientia_Karp_3_1 45.011 16.247 5784900 0 0 0 0 0 0 5784900 0 10412 1979 8917 63561 40556 40556 2090;2091;2092 0 YAFVNWINK Unmodified 1153.592 0.59202969 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;U3KQI3;Q59GX5;V9HWJ7;Q53FI1;A0A024RDT4;P13796;Q5TBN3 PLS3;HEL-S-37;LCP1 Plastin-3;Plastin-2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 59.092 59.343 2 0.00049805 25345 20181213_JW_Orientia_Karp_1_1 157.52 99.957 39023000 12806000 0 14909000 0 4024000 7227800 55651 0 10413 623 8918 63562;63563;63564;63565;63566;63567;63568 40557;40558;40559 40557 3 YAGIVSIQEYGPK Unmodified 1423.7347 0.73473076 1290 Karp_01163 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 53.592 53.908 2 0.022524 18565 20181213_JW_Orientia_Karp_3_2 84.507 47.363 54811000 13185000 11109000 14481000 4582500 5316700 5580100 0 557650 10414 1290 8919 63569;63570;63571;63572;63573;63574;63575 40560;40561;40562;40563 40563 4 YAGSQVASTSEVLK Unmodified 1438.7304 0.73037367 1466;1549 L8E853;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 40.818 41.148 2 3.1361E-88 13963 20181213_JW_Orientia_Karp_1_1 309.68 242.47 147760000 53181000 42182000 37875000 2438200 0 0 12089000 0 10415 1466;1549 8920 63576;63577;63578;63579;63580 40564;40565;40566;40567;40568 40564 5 YAIFQLSNGK Deamidation (NQ) 1140.5815 0.58152458 1178 Karp_00644 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 1 57.04 57.28 2 6.2968E-06 24640 20181213_JW_Orientia_Karp_1_1 175.91 129.75 245450000 116790000 33163000 39627000 0 15970000 33231000 6664600 0 10416 1178 8921 63581;63582;63583;63584;63585;63586;63587;63588;63589;63590;63591;63592 40569;40570;40571;40572;40573;40574;40575;40576;40577 40570 592 9 YALQMEQLNGILLHLESELAQTR Oxidation (M);Deamidation (NQ) 2686.3636 0.36361624 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 yes no 0 1 1 0 By MS/MS By matching By MS/MS 1 1 1 73.299 73.369 3 3.579E-07 33849 20181213_JW_Orientia_Karp_1_2 136.64 82.01 30687000 0 13832000 0 0 4991500 0 0 11864000 10417 208 8922 63593;63594;63595 40578;40579;40580 40578 83;1325;1326 161 3 YALQMEQLNGILLHLESELAQTR Oxidation (M);2 Deamidation (NQ) 2687.3476 0.34763183 208 B2RA03;A0A024RAY2;P05783;I6L965;F8VZY9 KRT18 Keratin, type I cytoskeletal 18 yes no 0 2 1 0 By MS/MS 1 73.36 73.41 3 0.033653 27204 20181213_JW_Orientia_Karp_3_1 53.454 22.473 0 0 0 0 0 0 0 0 0 10418 208 8922 63596 40581 40581 83;1325;1326 161 1 YALYDASFETK Unmodified 1306.6081 0.60813326 935 F6RFD5;V9HWA6;P60981;B7Z9M9;P60981-2 DSTN;HEL32 Destrin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 52.421 52.744 2 0.00062582 20975 20181213_JW_Orientia_Karp_1_1 135.86 59.795 136360000 55890000 30844000 45475000 0 0 1660700 2156500 337900 10419 935 8923 63597;63598;63599;63600;63601;63602;63603 40582;40583;40584 40582 3 YALYDATYETK Unmodified 1336.6187 0.61869795 1625 V9HWI5;P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;B4E112;E9PLJ3;Q549N0;Q9Y281-3;Q9Y281 HEL-S-15;CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 46.985 47.376 2 3.8077E-09 16005 20181213_JW_Orientia_Karp_3_1 198.61 139.37 516420000 0 0 0 0 118000000 242700000 26350000 129370000 10420 1625 8924 63604;63605;63606;63607 40585 40585 1 YAMVYGYNAAYNR Unmodified 1554.6925 0.69254837 207 A0A024RAX0;P08493;P08493-2 MGP Matrix Gla protein yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 48.839 49.105 2 0.0065192 16971 20181213_JW_Orientia_Karp_2_2 105.52 84.148 15253000 2151100 3877500 3783500 0 1651100 3681100 109130 0 10421 207 8925 63608;63609;63610;63611;63612;63613 40586;40587;40588 40587 3 YAMVYGYNAAYNR Oxidation (M);Deamidation (NQ) 1571.6715 0.67147858 207 A0A024RAX0;P08493;P08493-2 MGP Matrix Gla protein yes no 0 1 1 0 By MS/MS 1 44.784 45.436 2 0.037023 15035 20181213_JW_Orientia_Karp_3_1 81.972 66.081 486340 0 0 0 0 0 0 486340 0 10422 207 8925 63614 40589 40589 157 1 YAMVYGYNAAYNR Oxidation (M) 1570.6875 0.68746299 207 A0A024RAX0;P08493;P08493-2 MGP Matrix Gla protein yes no 0 0 1 0 By matching By matching By MS/MS 1 1 1 43.171 43.608 2 0.027595 13659 20181213_JW_Orientia_Karp_3_2 77.192 53.814 9108500 0 0 0 0 1540800 0 5254700 2313000 10423 207 8925 63615;63616;63617 40590 40590 157 1 YAPSEAGLHEMDIR Oxidation (M) 1603.7301 0.73005609 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61;E9PHF0;B4DTD5;B4E2F9;H0Y5F3 FLNA;FLJ00119 Filamin-A yes no 0 0 1 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 35.863 36.212 2 0.0041707 10930 20181213_JW_Orientia_Karp_1_2 109.72 58.935 21835000 5107100 7303000 4439200 613360 0 0 4372700 0 10424 1615 8926 63618;63619;63620;63621;63622 40591 40591 1242 1 YAPTEVGLHEMHIK Oxidation (M) 1639.8028 0.8028271 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 32.967 33.267 4 0.032727 9485 20181213_JW_Orientia_Karp_1_3 59.294 18.717 80702000 20125000 53364000 3599700 0 0 0 3613100 0 10425 1520 8927 63623;63624;63625;63626 40592 40592 1 YASICQQNGIVPIVEPEILPDGDHDLK Deamidation (NQ) 3020.4801 0.48010256 1546 V9HWN7;P04075;P04075-2;H3BQN4;H3BPS8;A4UCS9;A4UCT0;B7Z1Z9;B7Z3K7;B7Z1N6;B7Z1Y2;A0A024QZ64;B7Z3K9;P09972 HEL-S-87p;ALDOA;ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C yes no 0 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 1 71.17 71.277 3 0.0014715 28638 20181213_JW_Orientia_Karp_3_2 76.241 39.014 103930000 24035000 11678000 25026000 5034400 0 8201000 21373000 8584000 10426 1546 8928 63627;63628;63629;63630;63631;63632;63633;63634;63635 40593;40594;40595;40596;40597;40598;40599 40599 1031;1918;1919 7 YASNFYGPFR Unmodified 1220.5615 0.56145784 1305 Karp_01246 yes yes 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 51.727 51.91 2 0.011746 20420 20181213_JW_Orientia_Karp_1_1 90.149 53.388 15634000 5077500 5980400 4575800 0 0 0 0 0 10427 1305 8929 63636;63637;63638 40600;40601 40600 2 YASSANLHLPK Unmodified 1199.6299 0.62987176 803 CON__P34955 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1 1 34.826 35.182 2;3 0.0057134 9308 20181213_JW_Orientia_Karp_2_2 93.667 44.131 209900000 70402000 0 49680000 19628000 31847000 11616000 26416000 307470 + 10428 803 8930 63639;63640;63641;63642;63643;63644;63645;63646;63647;63648 40602;40603;40604;40605;40606;40607 40605 6 YATALYSAASK Unmodified 1144.5764 0.57643921 1679 Q53HH2;P48047;H7C086 ATP5O ATP synthase subunit O, mitochondrial yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 38.215 38.485 2 2.4929E-05 11983 20181213_JW_Orientia_Karp_1_3 166.66 104.08 57768000 22945000 13639000 17089000 0 1073700 0 3020800 0 10429 1679 8931 63649;63650;63651;63652;63653;63654 40608;40609;40610 40609 3 YAVHDPDNLYNQGDK Unmodified 1747.7802 0.7801774 1233 Karp_00900 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.971 37.305 3 0.0011857 11072 20181213_JW_Orientia_Karp_3_1 144.88 103.5 663050000 219830000 258530000 92583000 519620 24549000 0 67029000 0 10430 1233 8932 63655;63656;63657;63658;63659;63660;63661 40611;40612;40613;40614;40615;40616;40617 40616 7 YAVLYQPLFDK Unmodified 1355.7125 0.71253876 221 F8W118;F8VV59;B7Z9C2;A0A024RBE6;B3KV44;F8VRJ2;H0YH88;H0YHC3;F8W020;F8VXI6;F8VUX1;F8VY35;F8W543;F8W0J6;F5H4R6;B7Z2V4;H0YIV4;A0A024RBB7;P55209-2;P55209;B7Z5H0;F8VVB5 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 1 63.084 63.342 2 0.0028247 27756 20181213_JW_Orientia_Karp_1_1 114.4 75.648 59786000 14661000 18495000 15871000 1179000 4579500 3270000 0 1730600 10431 221 8933 63662;63663;63664;63665;63666;63667;63668;63669 40618;40619;40620;40621 40618 3 YCGQLQMIQEQISNLEAQITDVR Oxidation (M) 2752.316 0.31601412 1653 P35527;CON__P35527;K7EQQ3 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 74.784 74.81 3 1.3885E-09 27866 20181213_JW_Orientia_Karp_3_1 151.01 116.75 81148000 10743000 0 15593000 0 13217000 12578000 21823000 7193600 + 10432 1653 8934 63670;63671;63672;63673;63674;63675 40622;40623;40624 40624 1278 3 YCVQLSQIQAQISALEEQLQQIR Unmodified 2745.412 0.41196342 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS 1 1 76.308 76.288 3 3.5967E-06 30916 20181213_JW_Orientia_Karp_3_2 130.02 102.09 9669900 0 0 0 0 6658700 0 0 3011100 + 10433 798 8935 63676;63677 40625;40626 40626 2 YCVQLSQIQSQISALEEQLQQIR 3 Deamidation (NQ) 2764.3589 0.3589248 791 CON__P02535-1 yes yes 0 3 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 46.828 47.271 3 0.0072304 15971 20181213_JW_Orientia_Karp_3_1 71.842 28.019 267180000 0 123660000 0 56569000 0 38270000 11625000 37052000 + 10434 791 8936 63678;63679;63680;63681;63682 40627;40628;40629;40630;40631 40630 1644;1645;1646;1647;1648;1649 5 YDAAQLR Unmodified 835.41882 0.41881635 1466;1549 L8E853;B4DMS3;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 30.988 31.352 2 0.017678 8512 20181213_JW_Orientia_Karp_1_3 106.42 46.121 25391000 7767300 0 14522000 1632300 0 0 0 1469500 10435 1466;1549 8937 63683;63684;63685;63686 40632 40632 1 YDDLPEMAFYMVGSIDEAIEK Oxidation (M) 2451.0862 0.086180334 1341 Karp_01515 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 2 1 1 1 1 1 75.979 75.985 2;3 0.0049881 35384 20181213_JW_Orientia_Karp_1_3 91.969 69.478 41549000 11415000 3395300 12041000 1544500 2514500 2786300 7437800 414950 10436 1341 8938 63687;63688;63689;63690;63691;63692;63693;63694;63695 40633;40634;40635 40634 906 2 YDDLPEMAFYMVGSIDEAIEK 2 Oxidation (M) 2467.0811 0.081094957 1341 Karp_01515 yes yes 0 0 2 0 By MS/MS 1 72.622 72.772 3 0.028786 33488 20181213_JW_Orientia_Karp_1_2 50.916 21.798 7630600 0 7630600 0 0 0 0 0 0 10437 1341 8938 63696 40636 40636 906 0 YDDMAAAMK 2 Oxidation (M) 1046.4049 0.40488213 1650;556 B4DE78;P61981;V9HWD6;P31946-2;P31946;B5BU24;Q4VY20;Q4VY19;Q59EQ2 YWHAG;HEL-S-1;YWHAB 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed no no 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 19.64 20.01 2 0.00050756 4031 20181213_JW_Orientia_Karp_3_1 147.19 43.352 24322000 5947700 4858000 3620100 2987900 1869400 2204600 2480600 353560 10438 556;1650 8939 63697;63698;63699;63700;63701;63702;63703;63704 40637;40638;40639;40640;40641;40642;40643;40644 40643 347;348 8 YDDMASAMK 2 Oxidation (M) 1062.3998 0.39979675 45 A0A024R1K7;Q04917;B2R6N6;F8WEB6;A2IDB1 YWHAH 14-3-3 protein eta yes no 0 0 2 0 By MS/MS By MS/MS 1 1 19.259 19.483 2 0.022365 3460 20181213_JW_Orientia_Karp_2_3 75.378 29.66 1187400 0 0 829080 0 0 358290 0 0 10439 45 8940 63705;63706 40645;40646 40646 28;29 2 YDDNFPLSVWQTGSGTQTNMNINEVIANIANEK Unmodified 3682.721 0.72095455 1281 Karp_01117 yes yes 0 0 0 0 By MS/MS By matching 1 1 76.313 76.312 3 0.0013343 35848 20181213_JW_Orientia_Karp_1_1 57.563 42.746 10416000 5259000 0 5157200 0 0 0 0 0 10440 1281 8941 63707;63708 40647 40647 1 YDEAASYIQSK Unmodified 1273.5826 0.5826468 1555 P04899;P04899-4;B3KP24;B3KX51;Q96C71;P04899-6;P04899-3;P04899-5;P04899-2;Q6LCB5 GNAI2;WUGSC:H_LUCA15.1 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 38.697 38.971 2 1.5779E-07 12221 20181213_JW_Orientia_Karp_1_3 191.4 126.15 55939000 21143000 19073000 12655000 3067600 0 0 0 0 10441 1555 8942 63709;63710;63711;63712;63713 40648;40649;40650;40651 40650 4 YDEIFYNLAPADGK Unmodified 1614.7566 0.75658842 36 A0A024R0S6;Q9NZN4;B3KUH4;Q9NZN4-2;B4DU62;B7ZAY3 EHD2 EH domain-containing protein 2 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 63.134 63.317 2 0.020174 27666 20181213_JW_Orientia_Karp_1_1 85.522 52.293 32380000 15626000 4509400 12245000 0 0 0 0 0 10442 36 8943 63714;63715;63716 40652 40652 1 YDEMVESMK 2 Oxidation (M) 1162.4522 0.45222625 1728 V9HW98;P62258;G9K389;G9K388;B4DJF2;I3L3T1;B4DJB0 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 2 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 2 1 2 2 24.982 25.377 2 0.00016169 5848 20181213_JW_Orientia_Karp_1_2 166.3 130.11 22450000 2840300 4890800 3693900 1912400 1962200 737340 3928400 2484700 10443 1728 8944 63717;63718;63719;63720;63721;63722;63723;63724;63725;63726;63727;63728;63729 40653;40654;40655;40656;40657;40658 40654 1356;1357 6 YDEMVESMK Oxidation (M) 1146.4573 0.45731163 1728 V9HW98;P62258;G9K389;G9K388;B4DJF2;I3L3T1;B4DJB0 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 2 1 1 2 1 31.864 32.296 2 0.014476 9429 20181213_JW_Orientia_Karp_1_3 85.731 59.129 10766000 0 2154700 4786300 1689400 0 279620 1456100 399730 10444 1728 8944 63730;63731;63732;63733;63734;63735;63736;63737;63738 40659;40660;40661 40660 1356;1357 3 YDFLSQIDGGAR Unmodified 1340.6361 0.63607935 1446 Karp_02445;Karp_02033 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 62.857 63.115 2 2.9135E-07 26900 20181213_JW_Orientia_Karp_1_3 182.92 127.81 75854000 23983000 11577000 23776000 1205100 7328200 5442400 0 2541700 10445 1446 8945 63739;63740;63741;63742;63743;63744;63745 40662;40663;40664;40665;40666;40667;40668 40664 7 YDFPGDTVPIIR Unmodified 1391.7085 0.70851601 1176;1244 Karp_00632;Karp_00911 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 1 64.351 64.545 2 0.00017895 28831 20181213_JW_Orientia_Karp_1_1 162.64 100.53 2154200000 786540000 0 629670000 56807000 271460000 241540000 168150000 0 10446 1176;1244 8946 63746;63747;63748;63749;63750;63751;63752;63753;63754;63755;63756 40669;40670;40671;40672;40673;40674;40675;40676;40677 40670 9 YDGIILPGK Unmodified 974.54368 0.54368251 1739 Q08ES8;Q5VVD0;P62913-2;P62913 RPL11 60S ribosomal protein L11 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 51.336 51.586 2 0.00065133 20197 20181213_JW_Orientia_Karp_1_1 153.04 105.12 155280000 38722000 42769000 21870000 27461000 7029300 17425000 0 0 10447 1739 8947 63757;63758;63759;63760;63761;63762 40678;40679;40680;40681;40682 40678 5 YDGKWEVEEMK Unmodified 1412.6282 0.62821678 1637 P27824;P27824-2;Q16094;H0Y9Q7;D6RB85;D6RDP7;D6RAU8 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 40.818 41.148 3 0.014474 13993 20181213_JW_Orientia_Karp_1_1 89.561 39.412 34845000 7869900 11962000 9612300 2424700 0 0 2975400 0 10448 1637 8948 63763;63764;63765;63766;63767 40683;40684;40685 40683 3 YDGKWEVEEMK Oxidation (M) 1428.6231 0.6231314 1637 P27824;P27824-2;Q16094;H0Y9Q7;D6RB85;D6RDP7;D6RAU8 CANX Calnexin yes no 0 0 1 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 34.02 34.433 3 0.00086977 9977 20181213_JW_Orientia_Karp_1_3 141.71 91.259 27526000 0 0 16449000 1908900 2863300 0 6304300 0 10449 1637 8948 63768;63769;63770;63771;63772 40686;40687;40688;40689 40687 1262 4 YDGQVAVFGSDLQEK Unmodified 1654.7839 0.7838658 42 A0A024R1A3;P22314-2;P22314 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 54.673 54.999 2 3.8863E-13 22454 20181213_JW_Orientia_Karp_1_1 201.3 158.97 101100000 45034000 19400000 28731000 2908300 4023200 0 0 1000600 10450 42 8949 63773;63774;63775;63776;63777;63778 40690;40691;40692;40693 40690 4 YDGSNISDPIVIK Unmodified 1419.7246 0.72456001 1285 Karp_01156 yes yes 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 54.066 54.348 2 0.022755 20122 20181213_JW_Orientia_Karp_2_3 113.22 62.42 44089000 18735000 9193700 11773000 0 0 3719700 0 668100 10451 1285 8950 63779;63780;63781;63782;63783 40694 40694 0 YDHNNVLAYQLINISNK Unmodified 2018.0221 0.022139011 1340 Karp_01512 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 58.424 58.689 3 0.025802 24549 20181213_JW_Orientia_Karp_1_2 68.329 45.503 21577000 9265300 6494800 5362600 0 0 0 0 453870 10452 1340 8951 63784;63785;63786;63787 40695;40696 40696 2 YDIVLGNK Unmodified 920.49673 0.49673232 1328 Karp_01362 yes yes 0 0 0 0 By MS/MS 1 44.902 45.053 2 0.031288 14736 20181213_JW_Orientia_Karp_2_2 93.374 33.016 0 0 0 0 0 0 0 0 0 10453 1328 8952 63788 40697 40697 1 YDLSEVGR Unmodified 937.45051 0.45051041 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 42.15 42.47 2 0.0028797 14621 20181213_JW_Orientia_Karp_1_1 157.33 97.688 182600000 64259000 60549000 21916000 9784600 2957900 3822100 18864000 445100 10454 1170 8953 63789;63790;63791;63792;63793;63794;63795;63796 40698;40699;40700;40701;40702;40703;40704 40698 7 YDMAGSAAVVGAIK Unmodified 1351.6806 0.6805867 1349 Karp_01525 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 53.347 53.557 2 1.4515E-34 21561 20181213_JW_Orientia_Karp_1_1 244.27 189.73 53602000 17899000 17904000 12697000 0 2003100 3098800 0 0 10455 1349 8954 63797;63798;63799;63800;63801;63802 40705;40706;40707;40708 40705 4 YDNPQAGR Unmodified 919.41479 0.41479361 1179 Karp_00654 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 20.188 20.453 2 0.026233 4198 20181213_JW_Orientia_Karp_1_1 84.743 45.08 4775600 1518000 955960 952290 532790 174980 254710 386870 0 10456 1179 8955 63803;63804;63805;63806;63807;63808;63809 40709;40710 40709 2 YDNVMNDQR Oxidation (M) 1169.4771 0.47713587 1374 Karp_02110 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 20.998 21.236 2 0.0035935 4435 20181213_JW_Orientia_Karp_1_1 107.45 48.859 2328200 1138400 730650 0 0 225430 233740 0 0 10457 1374 8956 63810;63811;63812;63813 40711;40712 40711 965 2 YDPNYADIYYNK Unmodified 1537.6725 0.67252444 1323 Karp_01308 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.493 50.838 2 0.011544 19269 20181213_JW_Orientia_Karp_1_2 95.273 51.504 85900000 23524000 19999000 15282000 8615500 5357100 5268100 6224700 1630400 10458 1323 8957 63814;63815;63816;63817;63818;63819;63820;63821 40713 40713 1 YDPSYASAYNSK Unmodified 1364.5885 0.58846046 1448;1264;1145;1447;1085 Karp_00478;Karp_02495;Karp_01053;Karp_00200;Karp_02466 no no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 37.248 37.57 2 4.9712E-05 11543 20181213_JW_Orientia_Karp_1_2 167.11 127.06 208050000 66465000 43557000 63329000 17184000 527450 7737600 9249900 0 10459 1145;1448;1264;1085;1447 8958 63822;63823;63824;63825;63826;63827;63828 40714;40715 40714 2 YDSDSYQQLPSDLVDDLK Unmodified 2099.9535 0.9535099 1149 Karp_00508 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 68.904 69.062 2 1.1377E-16 24615 20181213_JW_Orientia_Karp_3_1 198.81 153.7 121280000 30752000 20768000 27387000 8165300 0 9024400 19279000 5904400 10460 1149 8959 63829;63830;63831;63832;63833;63834;63835 40716;40717 40717 2 YDSGFAEAYNNK Unmodified 1377.5837 0.58370943 1264 Karp_01053 yes yes 0 0 0 0 By matching By matching By MS/MS 1 1 1 40.59 40.773 2 0.0030565 13197 20181213_JW_Orientia_Karp_1_3 115.91 1.2047 30202000 8452300 12165000 9585200 0 0 0 0 0 10461 1264 8960 63836;63837;63838 40718 40718 1 YDVCSCSDGR Unmodified 1217.4441 0.44412118 1466;1549 L8E853;A8K7V7;B4DNX0;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 28.362 28.662 2 0.00093769 7723 20181213_JW_Orientia_Karp_1_1 125.57 93.809 11216000 3481700 2117700 4241700 0 0 0 1375000 0 10462 1466;1549 8961 63839;63840;63841;63842 40719;40720;40721 40719 3 YDVEECIQR Unmodified 1210.5288 0.52883709 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 40.451 40.626 2 0.0014161 13065 20181213_JW_Orientia_Karp_1_3 125.82 73.539 32050000 8917300 12775000 8885000 0 1472700 0 0 0 10463 1170 8962 63843;63844;63845;63846 40722;40723;40724;40725 40724 4 YDVLMPIASVTK Unmodified 1335.7108 0.7108242 1167 Karp_00621 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 64.863 65.063 2 0.029388 28452 20181213_JW_Orientia_Karp_1_2 80.102 9.1932 37458000 24034000 12866000 0 559060 0 0 0 0 10464 1167 8963 63847;63848;63849;63850 40726;40727 40726 2 YDWSTLHSPMLEQIVDNK Oxidation (M) 2191.0256 0.025569409 1150 Karp_00511 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 2 1 1 1 1 60.576 60.86 3 0.00027259 25844 20181213_JW_Orientia_Karp_1_2 128.45 73.354 89301000 26205000 17982000 17283000 4987900 9107700 9162200 0 4572700 10465 1150 8964 63851;63852;63853;63854;63855;63856;63857;63858;63859 40728;40729;40730;40731 40729 684 4 YDWSTLHSPMLEQIVDNK Unmodified 2175.0307 0.030654787 1150 Karp_00511 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 66.319 66.486 3 5.3607E-05 29259 20181213_JW_Orientia_Karp_1_2 158.17 120.73 92841000 32043000 25078000 26279000 0 4069100 3958000 1414500 0 10466 1150 8964 63860;63861;63862;63863;63864;63865 40732;40733;40734;40735;40736;40737 40733 6 YEDEINK Unmodified 909.40798 0.40797689 804;1657;995;996;799;341;679;793;805;814;796;819 CON__Q3TTY5;H6VRG0;H6VRG1;P04264;H6VRG3;H6VRF8;CON__P04264;H6VRF9;CON__H-INV:HIT000016045;F8VP67;H6VRG2;CON__P12035;P12035;CON__Q01546;CON__P35908;P35908;B4DRR0;CON__P02538;A8K2I0;P02538;B4DWU6;B4DRU6;CON__Q8VED5;CON__O95678;O95678;B4E1T1;B4DL32;H0YIN9;CON__P04259;P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;B2R853;Q0IIN1;CON__Q7Z794;Q7Z794;Q147W7 KRT1;KRT8;KRT3;KRT2;KRT6A;KRT75;KRT5;KRT6B;KRT6C;KRT77;KRT1B Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 1b no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 24.863 25.221 2 0.012576 5847 20181213_JW_Orientia_Karp_1_3 116.88 12.518 26696000 3735200 6158300 4484600 3838700 2474000 1160800 2909300 1935600 + 10467 814;995;996;796;804;1657;341;679;793;799;805;819 8965 63866;63867;63868;63869;63870;63871;63872;63873 40738;40739;40740;40741;40742;40743;40744 40740 7 YEDIDYAIDSLATDTFVIK Unmodified 2191.0572 0.057246693 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By matching 1 1 75.513 75.488 3 4.1694E-18 35260 20181213_JW_Orientia_Karp_1_1 206.13 158.28 26489000 23182000 0 0 0 3307700 0 0 0 10468 1121 8966 63874;63875 40745 40745 1 YEEENFYLEPYLK Unmodified 1735.7981 0.79811888 1599 P14927;B2R4A2 UQCRB Cytochrome b-c1 complex subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 64.745 64.911 2 1.2663E-72 28382 20181213_JW_Orientia_Karp_1_2 294.49 185.34 121930000 41974000 25776000 19051000 4715000 18301000 12115000 0 0 10469 1599 8967 63876;63877;63878;63879;63880;63881 40746;40747;40748;40749;40750;40751 40748 6 YEEENFYLEPYLK Deamidation (NQ) 1736.7821 0.78213446 1599 P14927;B2R4A2 UQCRB Cytochrome b-c1 complex subunit 7 yes no 0 1 0 0 By matching By matching By MS/MS 1 1 1 67.465 67.615 2 0.020967 29723 20181213_JW_Orientia_Karp_1_3 96.745 46.391 11259000 5291300 2743700 3224100 0 0 0 0 0 10470 1599 8967 63882;63883;63884 40752 40752 1066 1 YEEIIEK Unmodified 922.46476 0.46476349 1310 Karp_01252 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 35.157 35.53 2 0.012566 10504 20181213_JW_Orientia_Karp_1_3 116.9 12.157 135990000 36180000 40233000 37000000 4052400 3953500 0 9829000 4738200 10471 1310 8968 63885;63886;63887;63888;63889;63890;63891;63892 40753;40754 40753 2 YEELFPAFSDSR Unmodified 1459.662 0.66195975 35 M0R0Y2;A0A024R0R9;P54920;M0R213;M0R2M1;M0R0I4 NAPA Alpha-soluble NSF attachment protein yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 63.907 64.141 2 0.015246 27651 20181213_JW_Orientia_Karp_1_3 89.266 54.765 9537900 0 0 6879300 0 0 2548400 110170 0 10472 35 8969 63893;63894;63895 40755 40755 1 YEELQQTAGR Unmodified 1193.5677 0.56766543 799;679 B4E1T1;B4DL32;H0YIN9;H0YI76;CON__P13647;P13647 KRT5 Keratin, type II cytoskeletal 5 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 30.204 30.606 2 6.1826E-07 7809 20181213_JW_Orientia_Karp_3_1 204.34 121.91 65139000 10335000 6343500 7910400 11183000 8037500 0 8966700 12363000 + 10473 679;799 8970 63896;63897;63898;63899;63900;63901;63902;63903;63904 40756;40757;40758;40759;40760;40761;40762;40763;40764 40763 9 YEELQVTVGR Unmodified 1192.6088 0.60880197 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 1 1 1 45.745 46.065 2 1.2585E-08 15127 20181213_JW_Orientia_Karp_2_2 204.34 134.08 306460000 56835000 58134000 62659000 52028000 4864000 27495000 4773800 39673000 + 10474 804;1657 8971 63905;63906;63907;63908;63909;63910;63911;63912;63913;63914 40765;40766;40767;40768;40769;40770;40771;40772;40773;40774 40769 10 YEEVSVSGFEEFHR Unmodified 1713.7635 0.76346471 1014 I3L0K2;I3L3M7;I3L2R6;Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 50.427 50.765 3 0.0014627 18196 20181213_JW_Orientia_Karp_2_3 113.99 72.935 75835000 6022400 11121000 7831700 23459000 10203000 13358000 2909400 930590 10475 1014 8972 63915;63916;63917;63918;63919;63920;63921;63922;63923;63924;63925 40775;40776;40777;40778;40779;40780;40781 40779 7 YEGGYPALTEVMNK Unmodified 1570.7337 0.73374448 1006 H7C333;O75323 GBAS Protein NipSnap homolog 2 yes no 0 0 0 0 By MS/MS 1 56.464 56.464 2 0.024358 23416 20181213_JW_Orientia_Karp_1_1 97.911 54.629 0 0 0 0 0 0 0 0 0 10476 1006 8973 63926 40782 40782 1 YEGSYALTSEEAER Unmodified 1603.7002 0.70019575 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 41.07 41.363 2 9.3397E-91 13602 20181213_JW_Orientia_Karp_1_2 317.31 252.07 323220000 75860000 69427000 103700000 15719000 12368000 13634000 32508000 0 10477 345 8974 63927;63928;63929;63930;63931;63932;63933 40783;40784;40785;40786;40787;40788;40789;40790 40784 8 YEHQITNNIIYQPHQNIAVEK Unmodified 2551.2819 0.28193553 1212 Karp_00874 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 2 2 2 2 42.82 43.172 3;4 0.0025961 13422 20181213_JW_Orientia_Karp_3_2 89.353 52.264 171870000 78794000 16576000 0 16536000 15053000 0 25305000 19604000 10478 1212 8975 63934;63935;63936;63937;63938;63939;63940;63941;63942;63943;63944 40791;40792;40793;40794 40794 4 YEHQITNNIIYQPHQNIAVEK Deamidation (NQ) 2552.266 0.26595111 1212 Karp_00874 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.494 44.931 3 0.00096138 14722 20181213_JW_Orientia_Karp_2_2 109.37 82.746 12096000 0 0 0 0 2686700 0 7115200 2293800 10479 1212 8975 63945;63946;63947 40795;40796;40797 40795 617;618 3 YEILTPNSIPK Unmodified 1273.6918 0.69180331 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.567 53.834 2 0.00010258 21294 20181213_JW_Orientia_Karp_1_2 160.75 80.589 141350000 44897000 38153000 45203000 5895500 2406600 4791500 0 0 10480 47 8976 63948;63949;63950;63951;63952;63953 40798;40799;40800;40801;40802;40803 40799 6 YEILTPNSIPK Deamidation (NQ) 1274.6758 0.6758189 47 A0A024R1N1;P35579;Q86XU5;P35579-2;B4E3S1 MYH9 Myosin-9 yes no 0 1 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 56.207 56.497 2 0.011194 23628 20181213_JW_Orientia_Karp_1_1 102.52 48.458 50001000 12399000 10604000 21304000 0 0 1369000 4323900 0 10481 47 8976 63954;63955;63956;63957;63958 40804;40805;40806 40804 22 3 YELFGER Unmodified 912.43413 0.43413207 1358 Karp_01807 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 46.908 47.18 2 0.027146 15862 20181213_JW_Orientia_Karp_2_2 93.195 39.844 284920000 88061000 80659000 41194000 23722000 23601000 23404000 0 4281200 10482 1358 8977 63959;63960;63961;63962;63963;63964;63965 40807;40808;40809 40808 3 YEMFAQTLQQSR Unmodified 1500.7031 0.70311306 1708 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 51.048 51.223 2 5.6804E-40 19417 20181213_JW_Orientia_Karp_1_3 258.01 171.13 89025000 31389000 27988000 25170000 0 4477100 0 0 0 10483 1708 8978 63966;63967;63968;63969 40810 40810 1 YENEVALR Unmodified 992.49271 0.49270958 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 34.927 35.285 2 0.0040821 9704 20181213_JW_Orientia_Karp_2_1 149.94 74.747 663180000 122150000 213600000 120520000 23323000 21801000 12697000 62119000 86984000 + 10484 798 8979 63970;63971;63972;63973;63974;63975;63976;63977;63978 40811;40812;40813;40814;40815;40816;40817;40818 40814 8 YENEVALR Deamidation (NQ) 993.47673 0.47672516 798 CON__P13645;P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 1 0 0 By MS/MS 1 38.047 38.397 2 0.029059 12012 20181213_JW_Orientia_Karp_1_2 94.309 31.651 9568600 0 9568600 0 0 0 0 0 0 + 10485 798 8979 63979 40819 40819 279 1 YEPNNPEAYYNK Unmodified 1500.6521 0.65212334 1323 Karp_01308 no no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 38.523 38.904 2 0.011332 11260 20181213_JW_Orientia_Karp_2_2 95.618 61.432 67464000 0 18199000 24877000 9911700 2573700 1489200 7636400 2776600 10486 1323 8980 63980;63981;63982;63983;63984;63985;63986 40820;40821;40822 40822 3 YEPSGALYGLMR Unmodified 1355.6544 0.65437195 1376 Karp_02113 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 58.111 58.385 2 0.0034606 24314 20181213_JW_Orientia_Karp_1_2 114.4 72.053 23437000 0 13322000 10115000 0 0 0 0 0 10487 1376 8981 63987;63988 40823;40824 40823 2 YESLELCRPVLQQGR Unmodified 1846.936 0.93596654 1757 Q00610-2;Q00610 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 47.049 47.35 3 0.010716 15149 20181213_JW_Orientia_Karp_3_2 96.866 79.986 82230000 23132000 28639000 16606000 2658300 0 0 0 11196000 10488 1757 8982 63989;63990;63991;63992;63993 40825;40826;40827 40827 3 YESLTDPSK Unmodified 1038.487 0.4869555 1057;251;1838 K9JA46;P07900;P07900-2;Q2VPJ6;G3V2J8;B4DTA5;Q86SX1;Q58FF6;Q5T9W8;B4DMA2;A0A024RD80;P08238;Q6PK50;Q58FF7;O14942;Q58FF8 EL52;HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 33.1 33.35 2 0.022436 9925 20181213_JW_Orientia_Karp_1_1 82.645 47.2 46035000 28979000 0 10708000 5292500 0 1055100 0 0 10489 1057;251;1838 8983 63994;63995;63996;63997 40828;40829 40828 2 YESSSYTDQFSR Unmodified 1468.6107 0.61065246 423 Q68DX9;G5E9E7;A9CQZ8;G3V1L9;Q07157-2;Q07157;B4DZK4;Q6MZU1;Q9H317 DKFZp686M05161;TJP1;DKFZp686A1195 Tight junction protein ZO-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.725 39.9 2 0.0014649 13364 20181213_JW_Orientia_Karp_1_1 128.28 99.556 15041000 8206800 6833900 0 0 0 0 0 0 10490 423 8984 63998;63999;64000 40830;40831;40832 40830 3 YESTEHDQILEEGDAQEINNDLEQVER Deamidation (NQ) 3203.4015 0.40145413 1339 Karp_01469 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 53.709 53.934 3 8.8976E-06 22083 20181213_JW_Orientia_Karp_1_1 117.53 85.266 51431000 20633000 14168000 9438100 2224300 0 4968100 0 0 10491 1339 8985 64001;64002;64003;64004;64005;64006 40833;40834;40835;40836 40834 784;785 4 YESTEHDQILEEGDAQEINNDLEQVER Unmodified 3202.4174 0.41743855 1339 Karp_01469 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 2 1 1 56.246 56.572 3 7.0754E-19 23328 20181213_JW_Orientia_Karp_1_3 170.58 129.82 226710000 28964000 99622000 29206000 27392000 21399000 12400000 0 7728500 10492 1339 8985 64007;64008;64009;64010;64011;64012;64013;64014;64015;64016 40837;40838;40839;40840;40841;40842;40843 40839 7 YESTEHDQILEEGDAQEINNDLEQVER 2 Deamidation (NQ) 3204.3855 0.38546972 1339 Karp_01469 yes yes 0 2 0 0 By MS/MS 1 53.263 53.462 3 6.1355E-05 20854 20181213_JW_Orientia_Karp_1_3 125.19 93.221 0 0 0 0 0 0 0 0 0 10493 1339 8985 64017 40844 40844 784;785 1 YEVINNLNQLENTQSELEQQTQTTNQDSK Deamidation (NQ) 3409.5757 0.5757301 1390 Karp_02139 yes yes 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 63.497 63.697 3 3.952E-12 24309 20181213_JW_Orientia_Karp_2_2 142.01 114.14 43366000 13294000 0 19446000 0 7768700 0 2857500 0 10494 1390 8986 64018;64019;64020;64021;64022;64023 40845;40846;40847;40848;40849 40848 883;884;885;886;1865;1866 4 YEVINNLNQLENTQSELEQQTQTTNQDSK 2 Deamidation (NQ) 3410.5597 0.55974569 1390 Karp_02139 yes yes 0 2 0 0 By matching By MS/MS 1 1 64.04 64.214 3 0.0039423 27665 20181213_JW_Orientia_Karp_1_3 65.836 42.948 9269400 0 5545100 3724200 0 0 0 0 0 10495 1390 8986 64024;64025 40850 40850 883;884;885;886;1865;1866 1 YEVINNLNQLENTQSELEQQTQTTNQDSK Unmodified 3408.5917 0.59171452 1390 Karp_02139 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 61.944 62.26 3 4.0539E-21 24022 20181213_JW_Orientia_Karp_2_2 178.05 158.47 51809000 0 17142000 0 0 21258000 9657900 0 3751800 10496 1390 8986 64026;64027;64028;64029 40851;40852 40851 2 YEVINNLNQLENTQSELEQQTQTTNQDSK 3 Deamidation (NQ) 3411.5438 0.54376127 1390 Karp_02139 yes yes 0 3 0 0 By MS/MS 1 62.514 63.024 3 0.00044637 23629 20181213_JW_Orientia_Karp_3_2 89.297 71.503 0 0 0 0 0 0 0 0 0 10497 1390 8986 64030 40853 40853 883;884;885;886;1865;1866 1 YEVSVIPEYFSGPGTPLTGNAATEEVR Unmodified 2882.3974 0.39741879 852 D6RGG3;Q99715-4;Q99715 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 72.348 72.436 3 0.038586 33234 20181213_JW_Orientia_Karp_1_1 35.246 10.091 64719000 26072000 0 26118000 4999500 0 0 0 7529100 10498 852 8987 64031;64032;64033;64034 40854 40854 1 YEVSVYALK Unmodified 1070.5648 0.56481189 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6N084;Q68CX6;Q59G22;H0Y7Z1;Q5CZ99;B4DU16;B4DTK1;A6YID3;A6YID2;A6YID6;A6YID5;A6YID4;Q9UQS6;O95617 FN1;DKFZp686O12165;DKFZp686L11144;DKFZp686O13149;DKFZp686I1370 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.209 50.459 2 0.0050312 19058 20181213_JW_Orientia_Karp_1_2 104.06 41.949 89798000 31550000 25012000 16342000 7716200 4001300 5177100 0 0 10499 85 8988 64035;64036;64037;64038;64039;64040 40855;40856 40855 2 YEVVSWELVDDLDETER Unmodified 2095.9586 0.95859528 1378 Karp_02115 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.006 73.064 2 8.0513E-12 29485 20181213_JW_Orientia_Karp_2_2 188.09 144.29 102840000 26640000 0 24519000 8375500 9773500 13128000 13957000 6448600 10500 1378 8989 64041;64042;64043;64044;64045;64046;64047 40857;40858;40859;40860;40861;40862;40863 40859 7 YEWDVAEAR Unmodified 1137.5091 0.50908792 1593 P13639;Q8TA90;B4DPU3;Q6W6M8 EEF2 Elongation factor 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 47.884 48.242 2 0.0015887 17306 20181213_JW_Orientia_Karp_1_3 123.35 86.973 248730000 55608000 57878000 72752000 25037000 15702000 0 104930 21646000 10501 1593 8990 64048;64049;64050;64051;64052;64053;64054 40864;40865;40866;40867 40866 4 YEYHSIPNDMQAMVDDYR 2 Oxidation (M) 2277.9307 0.93068275 1094 Karp_00243 yes yes 0 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 41.43 41.75 3 6.6358E-07 14162 20181213_JW_Orientia_Karp_1_1 156.17 134.16 232860000 46990000 75725000 47471000 14777000 8158200 22694000 14308000 2732700 10502 1094 8991 64055;64056;64057;64058;64059;64060;64061;64062 40868;40869;40870;40871;40872;40873 40868 613;614 6 YEYHSIPNDMQAMVDDYR Oxidation (M) 2261.9358 0.93576812 1094 Karp_00243 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 47.241 47.529 3 0.00012394 17814 20181213_JW_Orientia_Karp_1_2 135.09 114.09 382590000 107210000 121590000 77171000 27585000 19361000 14130000 0 15547000 10503 1094 8991 64063;64064;64065;64066;64067;64068;64069;64070;64071;64072;64073;64074;64075;64076 40874;40875;40876;40877;40878;40879;40880;40881 40875 613;614 8 YEYHSIPNDMQAMVDDYR Oxidation (M);Deamidation (NQ) 2262.9198 0.91978371 1094 Karp_00243 yes yes 0 1 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 49.105 49.394 3 0.028033 18768 20181213_JW_Orientia_Karp_1_1 61.096 46.326 27642000 11752000 7346600 7359200 0 0 0 0 1184400 10504 1094 8991 64077;64078;64079;64080 40882;40883 40882 448 613;614 1 YEYHSIPNDMQAMVDDYR Unmodified 2245.9409 0.9408535 1094 Karp_00243 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 56.074 56.39 3 0.00012692 23352 20181213_JW_Orientia_Karp_1_1 128.59 106.82 121730000 34198000 23622000 44115000 4379600 9412800 5238100 0 760650 10505 1094 8991 64081;64082;64083;64084;64085;64086;64087 40884;40885;40886;40887;40888;40889 40884 6 YEYHSIPNDMQAMVDDYR 2 Oxidation (M);Deamidation (NQ) 2278.9147 0.91469833 1094 Karp_00243 yes yes 0 1 2 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 44.062 44.428 3 0.016924 14909 20181213_JW_Orientia_Karp_2_3 75.239 53.769 23948000 0 10953000 6028600 456830 1302900 1368300 3404500 433460 10506 1094 8991 64088;64089;64090;64091;64092;64093;64094 40890;40891 40891 448 613;614 2 YFAQEALTVLSLA Unmodified 1424.7551 0.75513185 350 B4E1Q0;B3KQV6;Q8NB89;B4DE69;B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 77.875 77.875 2 0.00062393 36941 20181213_JW_Orientia_Karp_1_2 150.15 109.43 37665000 21100000 8404100 4701100 0 0 0 3460100 0 10507 350 8992 64095;64096;64097;64098 40892 40892 1 YFFTSVSR Unmodified 1005.492 0.4919813 268;267;709;857;1906;2066;755 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G0ZDS4;G0ZDS0;G0Z2K7;F8RHE0;F8R117;F6KRK1;F4YU17;F4YU13;F2X5Y3;F2X5X5;F2VYH7;F2VNE5;F2VNC2;F1AQL2;F1AQK9;E9LY08;E2DH73;E2DH71;E2D5M1;E0YTI0;E0YTH6;E0WBS1;D7NQU5;D7NQU4;D7NQU2;D7NQU1;D7NPB0;D7NP99;D7NP93;D7NP88;D7NP79;D7NNT7;D7NNT5;D7NNT2;D7NNR7;D6QUR5;D6MLP0;D6MLL0;D6MLI0;D6MLH9;D6MKZ3;D5M8E5;D5L9B3;D5L9A5;D5FHR4;D5FHQ3;D5FHP3;D5FHF8;D5FHF7;D5FHF5;D2XUR1;C6K4H9;C6K4E5;C5J026;C5IZR1;C5IZQ9;B8Y1Y3;B8Y1Y2;B8Y1Y1;B1A0K5;A7X599;A1DZU3;Q5FZM6;G1END6;X2KXS0;U5IRI1;U5IQM1;U5IQL3;U5IQG9;S4TZH8;R4I4Z3;Q9TPV7;Q9TP39;Q38MU1;Q29756;Q1W5T6;Q106U3;M9P8Q8;M4WMI0;M1FUR7;M1F4B5;L0BXI7;L0BVU6;K9LC05;K7P5V8;K7P563;I7B294;I7B291;I6RUN0;I3UI48;I2B300;H9BQ74;G9HW33;G4XFZ3;G1EP84;G1EP58;G1ENZ3;G1ENE5;G0ZMG7;G0ZDS2;G0KXI8;F8SKU9;F8SKU7;F8R111;F6KRK3;E5DCM5;D5FZJ1;D5FZH9;D5FHK1;D5FHJ0;D5FHF4;D5FHF3;D3U6A6;D3U6A3;D3U455;D3U451;D3U447;D3U441;C9WEM7;C9WEM2;C8C9V8;C5IZR7;B6DX28;B1PL00;A8DA00;A0N0V9;A0A060VHF9;C4PIH6;Q6PW03;E1Y6U1;A4URH5;K7WT83;Q09160;G1DUW4;K4UF89;A5CLH5;F2VNJ8;Q2MCK0;E0WMX4;Q6E5A2;H6SFV0;E0WMX3;F2VNJ7;D5G1Q4;A6H345;X2KUP9;W0NUD2;W0NUB3;W0HHM2;V5JA12;V5J9X6;U5IT55;U5IQM5;U5IQH4;T1R3B2;T1R350;S4T750;S4T6V4;S4T6J6;R4I4D5;Q9TQ27;Q9MYD5;Q9MY40;Q9GIN6;Q6Q3G5;Q5FZM7;Q45YJ5;Q3C162;Q38HW6;Q2I0Z4;Q1HHC0;N0AA66;N0AA25;N0A2N5;M9XMA1;M9PAM2;M9PAL9;M9PAB1;M9PA18;M9P9U2;M9P9T8;M9P9C1;M9P980;M9P8Z3;M9P8T1;M4N6L4;M4MEV1;M4MAT6;M1FUR2;M1FUQ1;L7UPW6;L7PHW3;L7PH22;L0R375;L0BXI5;L0BWY3;K9LDK1;K9LC03;K7P5I7;K7P561;K7P4Y7;K4JAZ8;J9PVP6;J7GU98;J7FK26;J7F8K9;J7F675;J7F4Z9;I7A4C7;I6TRV7;I6SW64;I6RGV7;I6RCW3;I6R6Z0;I6R6Y7;I6NXD9;I6NVM0;I6NVL2;I6NN67;I6MHG3;I6MHF9;I3VYZ7;I3UI81;I3UI80;I3UI78;I3UI54;I3QHR3;I3QHP7;I2B301;I1W1L9;H9C5F7;H6V7R5;H6V093;H6V076;H6UV70;H6A2D1;H2BE89;H2BDP4;G9I2J5;G9I2J3;G9I2J2;G9HW76;G9HW75;G9HW62;G9HW25;G9HRP6;G9HRN4;G1EPF9;G1EPE8;G1EPA9;G1EP80;G1EP79;G1EP73;G1EP72;G1EP68;G1EP67;G1EP65;G1EP63;G1EP36;G1EP31;G1ENZ2;G1ENY9;G1ENE8;G1ENE7;G1ENE4;G0ZMG0;G0ZMF3;G0ZDS3;G0Z8C1;G0WVA1;F8SKV3;F8SKT6;F8RHC8;F8R8I4;F8R8G6;F8R139;F8R136;F8R125;F8R120;F6KRN9;F6KRN8;F6KRM5;F6KRL7;F6KRL6;F6KRJ7;F4YU29;F4YU28;F4YU22;F4YU15;F4YU07;F2X5Z9;F2X5Y7;F2VYI4;F2VYH9;F2VYH4;F2VYH2;F2VP63;F2VP53;F2VNJ5;F2VNI0;F2VNH4;F2VNG6;F2VNF3;F2VNE7;F2VNE6;F2VNE2;F2VND4;F2VNC7;F1AQL9;E9LY05;E9LY01;E9LXY4;E5G0Y8;E5DCL9;E5DCL8;E5DCL7;E5D6K7;E3SWH1;E3SG80;E3Q0X5;E2GJS1;E2GJG1;E2GJF9;E2GJE8;E2GJE7;E2D5N7;E2D5M7;E0YTI6;E0YTH8;E0YTG8;E0X9Q0;E0X5Z5;E0WMM7;E0WBZ9;E0WBY6;E0WBY2;E0WBX8;D7NQT7;D7NPB5;D7NPA8;D7NNU0;D7NNS9;D7NNS7;D7NNS1;D7NNS0;D7NNR6;D7NNQ2;D7NNP0;D7NNN3;D7NNM3;D6MLP6;D6MLP3;D6MLP1;D6MLN2;D6MLM6;D6MLL3;D6MLK7;D6MLK5;D6MLI8;D6MLH7;D6ML59;D6ML58;D6ML57;D6ML49;D6ML38;D6ML36;D6ML29;D6ML27;D6ML26;D6ML25;D6ML22;D6MKZ5;D6MJD2;D6MJ90;D6C6C4;D6C521;D5M8G0;D5M8F0;D5L9B0;D5L9A7;D5L998;D5G238;D5FZV2;D5FZI7;D5FZI1;D5FHR8;D5FHR7;D5FHM4;D5FHM2;D5FHK6;D5FHJ9;D5FHH9;D5FHH6;D3U6A5;D3U476;D3U459;D3U458;D3U457;D3U449;D3U419;D3JT94;D2DKZ4;D2DKY9;D2DKY8;D2DKY6;D2DKY2;D2DKX9;C9WEN2;C9WEM3;C9WEM1;C9WEL0;C9E8S2;C9E1D4;C8CH71;C8CH70;C8CH69;C8CH68;C7FE04;C7FDQ3;C7FDQ0;C7FDP5;C6K4J5;C6K4J1;C6K4I9;C6K4I5;C6K4H7;C6K4H1;C6K4G9;C6K4F8;C6K4F0;C6K4E9;C6K4E1;C5IZR6;C5IZR5;C5IZQ5;C5IZP9;C5IZP5;C4PFZ0;C0M145;A7X549;A7X516;A7L3T0;A5YVG8;A5JSG6;A5HKP0;A4USH4;A4USH2;A4USG9;A4USG6;A2VBX4;A1Z287;A1Z0L7;Q700J7;M1F4U2;I6RCX5;I6NXK5;G0X8R0;F2VNC3;D6MLL6;D6BPR0;D5FHK9;A1KWS8;O43828;B3GW70;Q5D1X2;Q861H1;M1L8W8;M1F4V6;K9LC09;K7XSD6;K7P4Y5;I6SJ70;G1ENE0;G0ZDT0;F8SKU6;F8SKU4;F6KRJ0;F2VP59;E9LXZ0;E0WN50;E0WBY9;D7GN22;D3U699;C9WEL4;C6K4I8;C6K4I4;C6K4G5;C6K4F2;C6K4E6;B8YCR8;A0A060CZ20;I7EQF7;A7MAE1;X5CHJ2;X2J3V4;W8YM39;W8E988;W6SQV0;W6SNC0;W0T236;W0FF27;V9VYY9;U6EV21;U5XMI1;U4QB70;T2MJ84;T1WQ06;T1RT90;S5NIY1;S0F3H7;S0F0M8;R9WAS6;R9RVK4;Q8MHP8;Q8MHP7;Q75WB6;Q75NJ3;Q6L6R5;Q6F3I9;Q68Y63;Q60I39;Q5W9R8;Q5R1M0;Q5EPE9;Q546Q4;Q546F7;Q540M3;Q4VYE6;Q4LAU0;Q308P3;N1NSY8;N0GWB7;N0AAA5;M5AUI8;M4VSA0;M4VMS8;M4VLP5;M4QNU4;M1KQ42;L7XDT5;L7XDE9;L7WM55;I7HAR2;I6Z8E6;I6QTM5;I2GUK0;I2GUJ9;I2G8B5;I1VXM3;I1VXL9;H9BE43;H9BB16;G9IHU5;G8GBV1;G8GBV0;G8FQ52;G0M6G2;F5BZ30;F5ATC5;F4ZZU3;E9ABI2;E5BBI6;E3UM70;E3Q1V2;E2GD50;E0WMV7;E0WMV2;D7GLM1;D5L6G2;D5H3I6;D3YLL2;D2KZ31;D2KZ29;D2KZ27;D1H0T8;C6L835;B9W1S7;B6ECH5;B5A516;B3V990;B0LV24;A7WPI9;A7LKN0;A6N9E1;A5A4L6;A4UUL3;A0A061CVW2;I2GAD7;F0VRV9;D5H3V7;D5H3U0;D5H3T3;Q8WLS4;A5I8L1;U5YMN5;U5YMN1;U5YMG9;U5YMG4;U5YMF9;U5YKE8;U5YKE0;U5YJM1;U5YJI7;U5YJI3;U5YJG6;H2DDR7;F6IQV5;F6IQV4;F6IQV3;F6IQV2;F6IQV1;F6IQV0;F6IQU9;F6IQU8;F6IQT2;F6IQS9;F6IQS6;F6IQS5;F6IQS4;F6IQS3;F6IQS2;F6IQS1;B0BKZ4;A5PHT6;X5MPH1;X5MNS3;A0A060VHG8;A0A060VHD9;A0A060VG17;Q861F7;Q861F6;Q8HX85;O78126;O19642;W1I6E7;S6FW97;S6AU97;Q9TQB6;Q9TQ73;Q9TQ65;Q704F3;Q53Z42;Q3LRR6;Q2LC95;P79603;I6YAY1;G9FXD6;E5FQ49;D9UB09;D9UB07;D7GNM8;D5H3T6;D5H3T4;D5H3T1;C5IWX9;C5IWX5;B2LT55;A5A4G3;P01892;Q6L6T0;Q0P6N9;E0WMM9;D7GNM3;D3YFD3;R9WXA9;W8NKY4;G3C9V4;S5T475;Q9BD14;Q95IB1;Q4VYU3;Q206J8;N1NUT9;M9TME2;M1XK38;D7NMJ8;D1H0T5;B0LV25;F2XI28;L7WQ81;A0A061A7U0;T1WGK5;K4TZQ2;G1UK07;F2X5P6;D3YLL1;D2KZ37;B2DFV9;A2V815;Q29757;Q06FC3;Q6VS85;A7MAP2;D5H3T7;U5YKC3;F6IQS8;F6IQS7;U5YJN4;U5YJP4;U5YJN8;F6IQT1;U5YMP0;F6IQT0;F6IQT3;U5YJH8;F6IQU7;A0A060VHF3;X5MBH5;A0A060VG36;A0A060VD05;W0UTP4;Q8WUX3;D0V481;A0A060VHE9;I3ZN76;Q95J05;V6A6U0;E3Q1L4;Q3LRR7;D7GM34;Q52QV5;Q50I06;A7M780;I3VB19;Q6R741;E7BDE1;F6IR58;Q7YQ33;D5H3T9;A5JUX0;O02922;D2U6Y7;Q9MYB7;B7XGC2;Q9TPQ6;M1F4B6;K7P5I8;I6TMZ2;G0KXH3;D3U474;C5IZN8;D9IDV1;Q8MHN8;A1KWT0;L8B932;I3ZN78;C5IWZ0;C5IWY9;P30459;T2ET92;Q45NE1;Q0GE97;J7RE54;I3VB22;E7BBA3;E0WMV3;E0WMN2;D5GU49;W6JNQ2;A4URH6;Q9GJ45;F6IR39;X5MI18;A0A061DD14;Q9GJ43;X5M4Z2;Q9GJ44;Q5RJ27;B5TZV4;S6AP35;P10314;X2L7S8 HLA-A;HLA;HLA-A*03;HLA-B;HLA-A*01;HLA-A null;MHC class I HLA-A;HLA-A*0226;HLA-A*02;HLA-DQB1 HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-80 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 48.722 48.972 2 0.0053341 18495 20181213_JW_Orientia_Karp_1_1 118.74 34.991 91685000 31676000 26445000 20277000 8755300 1746000 2785200 0 0 10508 268;267;709;755;857;1906;2066 8993 64099;64100;64101;64102;64103;64104 40893;40894;40895;40896;40897 40893 5 YFHPPAHLQAK Unmodified 1307.6775 0.67749065 776 C9JP00;Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56;H7C4T5;O95205;A0PJJ3;Q86VM6;A2A3S3;Q5VZF2-3;Q5VZF2-2;Q5VZF2;C9JCX1;B4DLS5;H7C4Y1;B4E233 MBNL1;MBLL;MBNL2 Muscleblind-like protein 1;Muscleblind-like protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 29.325 29.625 3 0.00054711 7249 20181213_JW_Orientia_Karp_3_1 122.33 96.211 47564000 17202000 12774000 9940200 0 1881800 1430100 4334900 0 10509 776 8994 64105;64106;64107;64108;64109;64110 40898;40899;40900;40901;40902 40902 5 YFHVVIAGPQDSPFEGGTFK Unmodified 2195.0688 0.068754852 938 F8VZ29;F8VSD4;V9HW41;F8VV71;P61088 UBE2N;HEL-S-71 Ubiquitin-conjugating enzyme E2 N yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 61.051 61.317 3 0.037436 26543 20181213_JW_Orientia_Karp_1_1 42.58 27.139 38625000 24447000 12926000 0 1252200 0 0 0 0 10510 938 8995 64111;64112;64113 40903 40903 1 YFLVGAGAIGCELLK Unmodified 1609.8538 0.85380004 42 A0A024R1A3;P22314-2;P22314 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 71.555 71.654 2 0.00027489 32409 20181213_JW_Orientia_Karp_1_3 145.91 119.8 28332000 11387000 0 7233600 1227100 0 0 8484300 0 10511 42 8996 64114;64115;64116;64117;64118 40904;40905;40906 40905 3 YFPDPDLPPIILDQSLIDNIASSLPELPDAK Unmodified 3405.7596 0.75955511 1317 Karp_01279 yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 79.928 79.876 3 0.0043199 37908 20181213_JW_Orientia_Karp_1_2 55.819 39.881 11499000 4643100 3030100 2596700 1228900 0 0 0 0 10512 1317 8997 64119;64120;64121;64122 40907 40907 1 YFPTQALNFAFK Unmodified 1445.7343 0.73433683 1023;1557 I7HJJ0;Q6I9V5;P12236;Q59EI9;V9GYG0;A8K787;P12235;Q59EP7;Q9H0C2;P05141;Q6NVC0 SLC25A6;SLC25A4;SLC25A31;SLC25A5 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 1 68.441 68.641 2 0.00090631 30388 20181213_JW_Orientia_Karp_1_3 136.49 81.425 30607000 0 0 16011000 1242600 3369400 1655800 8328000 0 10513 1023;1557 8998 64123;64124;64125;64126;64127;64128;64129 40908;40909;40910;40911 40910 4 YFQFQEEGK Unmodified 1174.5295 0.52948901 1501 Q53R19;O15144;A0A024R408;Q9BXV5 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 43.326 43.619 2 0.0042694 14902 20181213_JW_Orientia_Karp_1_2 107.69 70.6 44716000 9290700 18340000 8792900 2592000 738240 1072900 3889100 0 10514 1501 8999 64130;64131;64132;64133;64134;64135;64136 40912;40913;40914;40915 40914 4 YFQIAPCFR Unmodified 1200.575 0.57499942 1168 Karp_00622 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 57.665 57.865 2 0.01153 24418 20181213_JW_Orientia_Karp_1_1 91.065 60.495 27553000 9691700 6098900 7746200 0 4016300 0 0 0 10515 1168 9000 64137;64138;64139;64140 40916;40917;40918;40919 40916 4 YFSTFAESQNIHEER Unmodified 1856.8329 0.83294126 1428 Karp_02381 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 41.73 42.032 3 0.034546 13397 20181213_JW_Orientia_Karp_3_1 77.192 47.503 211900000 46528000 72496000 54280000 0 12372000 6933300 17590000 1697100 10516 1428 9001 64141;64142;64143;64144;64145;64146;64147 40920 40920 1 YFTSNLAK Unmodified 942.48108 0.48108226 1309 Karp_01250 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.043 37.334 2 0.009836 10358 20181213_JW_Orientia_Karp_2_2 104.37 29.648 93981000 48183000 19369000 12524000 0 3452200 0 10453000 0 10517 1309 9002 64148;64149;64150;64151;64152;64153 40921;40922;40923;40924;40925;40926 40924 6 YGADINAYDSR Unmodified 1243.5469 0.54692999 1185 Karp_00684 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 39.87 40.18 2 0.0036793 12810 20181213_JW_Orientia_Karp_1_3 110.84 56.421 27118000 10532000 0 8492300 3110500 0 866710 4116900 0 10518 1185 9003 64154;64155;64156;64157;64158;64159;64160 40927;40928;40929 40929 3 YGDVCPAGWTPGTEGMEATSDGVCHYLTSNAEK Oxidation (M) 3575.4915 0.49154824 1399 Karp_02188 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 56.742 57.1 3 3.9862E-16 23333 20181213_JW_Orientia_Karp_1_2 145.43 129.54 106000000 17369000 17530000 10634000 13230000 7948000 12802000 21874000 4613800 10519 1399 9004 64161;64162;64163;64164;64165;64166;64167;64168 40930;40931;40932;40933;40934;40935;40936;40937;40938;40939 40931 1008 10 YGDVCPAGWTPGTEGMEATSDGVCHYLTSNAEK Unmodified 3559.4966 0.49663362 1399 Karp_02188 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 61.549 61.811 3 0.0002651 26212 20181213_JW_Orientia_Karp_1_3 68.93 54.106 58099000 18999000 8372400 19473000 0 6753600 0 0 4501600 10520 1399 9004 64169;64170;64171;64172;64173 40940;40941;40942;40943 40941 4 YGFIESPYR Unmodified 1130.5397 0.53965977 1170 Karp_00624 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 50.442 50.759 2 0.010479 17878 20181213_JW_Orientia_Karp_2_1 93.143 52.792 81749000 0 0 0 41200000 15989000 24559000 0 0 10521 1170 9005 64174;64175;64176 40944;40945;40946;40947 40944 4 YGGDEIPFSPYR Unmodified 1399.6408 0.64083038 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 57.327 57.672 2 0.0004672 23520 20181213_JW_Orientia_Karp_1_3 150.94 16.35 264870000 87467000 77678000 62255000 9073500 11064000 9877800 1140600 6318200 10522 1615 9006 64177;64178;64179;64180;64181;64182;64183;64184 40948;40949;40950;40951;40952;40953;40954;40955 40950 8 YGGELVPHFPAR Unmodified 1341.683 0.68296996 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 47.523 47.773 3 0.0021806 17313 20181213_JW_Orientia_Karp_1_2 105.2 74.135 189400000 51706000 90944000 32367000 4994400 2137800 7255100 0 0 10523 1520 9007 64185;64186;64187;64188;64189;64190;64191 40956;40957;40958;40959;40960;40961 40957 6 YGGQPVPNFPSK Unmodified 1289.6404 0.64043645 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 44.507 44.839 2 0.0008251 15413 20181213_JW_Orientia_Karp_1_3 139.15 90.87 140350000 0 95925000 38829000 5598500 0 0 0 0 10524 1615 9008 64192;64193;64194;64195;64196 40962;40963;40964;40965 40964 4 YGIEASQDEINQFIAMEEK Unmodified 2214.0151 0.015064302 1443 Karp_02418 yes yes 0 0 0 0 By MS/MS By matching By matching 1 1 1 70.281 70.401 2 0.00026932 32002 20181213_JW_Orientia_Karp_1_1 125.5 87.1 8855600 6217100 0 0 0 0 1968200 0 670290 10525 1443 9009 64197;64198;64199 40966 40966 1 YGINTTDIFQTVDLWEGK Unmodified 2099.0211 0.021135958 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 74.806 74.838 2 5.0597E-68 34844 20181213_JW_Orientia_Karp_1_2 328.3 251.17 517230000 96438000 74591000 154090000 1460600 63634000 56129000 68775000 2117900 10526 1662 9010 64200;64201;64202;64203;64204;64205;64206;64207 40967;40968;40969;40970;40971;40972;40973 40968 7 YGINTTDIFQTVDLWEGK Deamidation (NQ) 2100.0052 0.0051515425 1662 P37802;P37802-2;X6RJP6 TAGLN2 Transgelin-2 yes no 0 1 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 76.311 76.302 2 1.0556E-53 31332 20181213_JW_Orientia_Karp_2_1 259.27 183.71 57566000 8475900 14342000 0 10319000 4400800 6384600 13643000 0 10527 1662 9010 64208;64209;64210;64211;64212;64213 40974;40975;40976;40977 40976 1114 4 YGITDLR Unmodified 836.43922 0.43921744 1344 Karp_01520 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 44.49 44.766 2 0.028142 15982 20181213_JW_Orientia_Karp_1_1 91.906 32.925 105910000 62804000 27471000 9908700 2429400 3042200 0 0 252540 10528 1344 9011 64214;64215;64216;64217;64218;64219 40978 40978 1 YGIVGLPNVGK Unmodified 1115.6339 0.63389451 1101 Karp_00270 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 55.667 55.983 2 0.0033297 20673 20181213_JW_Orientia_Karp_2_2 118.74 88.425 175210000 60270000 47125000 38312000 4569500 9391400 15353000 0 192380 10529 1101 9012 64220;64221;64222;64223;64224;64225;64226 40979;40980;40981;40982;40983;40984 40983 6 YGLFPANYVELR Unmodified 1440.7402 0.74015049 117 A0A024R5M3;Q53HG7;Q14247-3;Q14247;B3KRK4 CTTN Src substrate cortactin yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 66.526 66.733 2 0.00042015 26515 20181213_JW_Orientia_Karp_2_3 152.54 106.94 85314000 15467000 8747400 10217000 11519000 19783000 12658000 3872800 3050100 10530 117 9013 64227;64228;64229;64230;64231;64232;64233;64234 40985;40986;40987;40988;40989;40990;40991;40992;40993 40990 9 YGLSLHGIMNGELLTQEIAEEK Deamidation (NQ) 2445.2097 0.20974136 1201 Karp_00820 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 70.468 70.558 3 5.8633E-18 31995 20181213_JW_Orientia_Karp_1_2 191.89 128.44 152480000 70502000 25724000 31085000 0 16474000 8696600 0 0 10531 1201 9014 64235;64236;64237;64238;64239;64240 40994;40995;40996;40997;40998 40995 615 5 YGLSLHGIMNGELLTQEIAEEK Oxidation (M);Deamidation (NQ) 2461.2047 0.20465599 1201 Karp_00820 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 66.74 66.917 3 6.8211E-30 26733 20181213_JW_Orientia_Karp_2_3 211.67 165.18 46908000 0 0 2239600 0 23404000 15615000 0 5650200 10532 1201 9014 64241;64242;64243;64244;64245 40999;41000;41001;41002;41003;41004 41002 615 768 6 YGLSNSIIGR Unmodified 1078.5771 0.57710791 1332 Karp_01370 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 47.94 48.326 2 0.0001798 18023 20181213_JW_Orientia_Karp_1_1 145.9 83.322 184950000 62796000 65189000 0 19611000 14112000 0 48023 23199000 10533 1332 9015 64246;64247;64248;64249;64250;64251 41005;41006;41007 41005 3 YGLSNSIIGR Deamidation (NQ) 1079.5611 0.56112349 1332 Karp_01370 yes yes 0 1 0 0 By MS/MS By matching By matching 1 1 1 53.551 53.734 2 0.0072523 21646 20181213_JW_Orientia_Karp_1_1 105.52 62.922 36710000 16412000 5147500 15151000 0 0 0 0 0 10534 1332 9015 64252;64253;64254 41008 41008 768 1 YGPADVEDTTGSGATDSK Unmodified 1769.7592 0.75916719 80 A0A024R3W7;P24534;A4D1M6;C9JZW3 EEF1B2;LOC392793 Elongation factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.806 40.123 2 2.474E-164 13400 20181213_JW_Orientia_Karp_1_1 351.61 272.12 146560000 33180000 43386000 21133000 18851000 0 13603000 16406000 0 10535 80 9016 64255;64256;64257;64258;64259;64260;64261 41009;41010;41011;41012;41013;41014;41015;41016 41009 8 YGQISEVVVVK Unmodified 1219.6812 0.68123863 682 K7ELV6;K7ENX8;K7EJV5;Q6ZR81;K7ELT6;B4E2A3;K7EMY9;K7EPM4;Q53XX5;K7ER40;K7EQR7;D6W5Y5;Q14011;Q14011-2 CIRBP Cold-inducible RNA-binding protein yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 49.11 49.492 2 0.031762 17217 20181213_JW_Orientia_Karp_2_2 78.513 14.979 20660000 0 2326600 0 7544800 3666400 6071700 0 1050400 10536 682 9017 64262;64263;64264;64265;64266 41017;41018 41018 2 YGSGGGSKGGSISGGGYGSGGGK Unmodified 1889.8504 0.85038223 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 1 By matching By matching By MS/MS 1 1 1 22.832 23.217 3 0.029309 4841 20181213_JW_Orientia_Karp_3_1 58.479 21.709 2952800 0 0 0 0 1549500 802770 600560 0 + 10537 804;1657 9018 64267;64268;64269 41019 41019 1 YGVNPGPIVGTTR Unmodified 1329.7041 0.70409934 222 A0A024RBE7;P42167;G5E972;A0A024RBH7;P42167-2;Q59G12;P42167-3;P42166;H0YJH7 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.413 46.733 2 0.0061944 16666 20181213_JW_Orientia_Karp_1_2 106.67 57.249 98993000 30424000 25349000 16484000 4348700 3491400 5985700 857690 12053000 10538 222 9019 64270;64271;64272;64273;64274;64275;64276;64277 41020;41021 41021 2 YGVSGGGFSSASNR Unmodified 1344.6058 0.60584185 796 CON__P12035;P12035 KRT3 Keratin, type II cytoskeletal 3 yes no 0 0 0 0 By MS/MS 1 35.25 35.902 2 0.025335 10431 20181213_JW_Orientia_Karp_3_1 81.676 26.613 2217800 0 0 0 0 0 0 2217800 0 + 10539 796 9020 64278 41022 41022 1 YGVSGYPTLK Unmodified 1083.5601 0.56006086 516;999 B3KQT9;V9HVY3;P30101;B3KQT2;H7BZJ3 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 no no 0 0 0 0 By MS/MS 1 44.677 45.027 2 0.0039904 15735 20181213_JW_Orientia_Karp_1_2 102.62 45.574 36144000 0 36144000 0 0 0 0 0 0 10540 516;999 9021 64279 41023;41024 41024 2 YGYTHLSTGDLLR Unmodified 1494.7467 0.74669243 1540 Q6FGX9;Q53EY8;Q5T9B7;P00568 AK1 Adenylate kinase isoenzyme 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 47.248 47.614 3 0.013098 17335 20181213_JW_Orientia_Karp_1_2 103.14 88.296 22746000 0 15933000 2771500 4040700 0 0 0 0 10541 1540 9022 64280;64281;64282 41025;41026 41025 2 YHEAIENFNIAIK Deamidation (NQ) 1561.7777 0.77765821 1152;1448 Karp_01552;Karp_00538;Karp_02495 no no 0 1 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 52.314 52.544 3 1.4424E-24 18817 20181213_JW_Orientia_Karp_2_1 226.04 7.9753 124280000 41379000 0 20618000 23733000 8267000 30278000 0 0 10542 1152;1448 9023 64283;64284;64285;64286;64287 41027;41028;41029 41027 548 3 YHEIQVTYLDYYNNLK Unmodified 2075 6.5851004E-06 1113 Karp_00296 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 1 56.735 57.118 2;3 0.00029849 23724 20181213_JW_Orientia_Karp_1_1 141.54 107.43 24884000 7939900 8928300 1210800 6493200 0 0 311720 0 10543 1113 9024 64288;64289;64290;64291;64292;64293 41030;41031;41032 41030 3 YHEIQVTYLDYYNNLK Deamidation (NQ) 2075.984 0.98402217 1113 Karp_00296 yes yes 0 1 0 0 By matching By MS/MS By MS/MS 1 1 1 58.551 58.734 3 0.0062331 24539 20181213_JW_Orientia_Karp_1_2 102.15 64.677 53449000 23682000 16122000 13645000 0 0 0 0 0 10544 1113 9024 64294;64295;64296 41033;41034 41033 488;489 2 YHNLLIGDPTAER Unmodified 1497.7576 0.75759147 1360 Karp_01811 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 44.619 44.886 3 0.013098 15657 20181213_JW_Orientia_Karp_1_2 96.756 47.4 93308000 27864000 21768000 38171000 0 2008600 882730 2613600 0 10545 1360 9025 64297;64298;64299;64300;64301;64302 41035;41036;41037;41038 41036 4 YHNVGLSK Unmodified 916.47667 0.47666558 254 H0YA96;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103-4;Q14103-3;Q14103-2;Q14103;B4E0W4 HNRNPD;HNRPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 19.254 19.672 2 0.0086706 3873 20181213_JW_Orientia_Karp_2_3 108.09 38.704 12462000 3762800 0 0 2644400 1955100 2106400 1414300 578550 10546 254 9026 64303;64304;64305;64306;64307;64308 41039;41040;41041;41042 41040 4 YHPHGELAVYDSLVR Unmodified 1754.874 0.87401821 1139 Karp_00451 yes yes 0 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 1 43.791 44.069 3;4 0.022699 14298 20181213_JW_Orientia_Karp_2_1 82.483 49.279 74047000 21931000 23969000 20871000 6888500 387550 0 0 0 10547 1139 9027 64309;64310;64311;64312;64313;64314;64315 41043;41044 41044 2 YHQTDDQVAR Unmodified 1231.5582 0.55816338 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 18.273 18.572 2 0.0035791 3333 20181213_JW_Orientia_Karp_1_2 107.45 54.103 2255700 0 707430 1258600 0 0 0 289720 0 10548 1118 9028 64316;64317;64318;64319 41045;41046;41047 41045 3 YHTINGHNAEVR Deamidation (NQ) 1410.664 0.66402543 191 A0A024RA27;A0A024RA61;P22626-2;P22626;I6L957;A0A024RA28 HNRPA2B1;HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 1 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 23.741 24.121 3 0.0073498 4359 20181213_JW_Orientia_Karp_3_2 103.43 60.011 107450000 0 28332000 11998000 13080000 8835700 19293000 16506000 9401600 10549 191 9029 64320;64321;64322;64323;64324;64325;64326 41048;41049;41050 41050 78 2 YHTSQSGDEMTSLSEYVSR Oxidation (M) 2191.9328 0.93279124 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 HSP90AB1 Heat shock protein HSP 90-beta yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.819 40.179 3 3.3974E-07 12790 20181213_JW_Orientia_Karp_1_3 157.42 126.12 347700000 76991000 78834000 83633000 14738000 0 0 85986000 7520600 10550 251 9030 64327;64328;64329;64330;64331;64332 41051;41052;41053;41054;41055;41056;41057 41053 182 7 YHTSQSGDEMTSLSEYVSR Unmodified 2175.9379 0.93787661 251 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 HSP90AB1 Heat shock protein HSP 90-beta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.241 47.586 3 0.00079736 16879 20181213_JW_Orientia_Karp_1_3 124.45 98.631 244940000 65142000 95165000 56727000 4272300 4728900 7702300 567520 10640000 10551 251 9030 64333;64334;64335;64336;64337;64338;64339;64340 41058;41059;41060 41060 3 YIAIDINEQAVK Unmodified 1375.7347 0.73473076 1326 Karp_01350 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 53.165 53.502 2 0.025632 20945 20181213_JW_Orientia_Karp_1_3 82.417 38.099 18266000 0 7080400 5539100 3029600 0 2617000 0 0 10552 1326 9031 64341;64342;64343;64344;64345 41061;41062 41062 2 YIAQEILAIK Unmodified 1160.6805 0.68051035 1071 Karp_00042 yes yes 0 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 58.8 59.01 2 0.015341 24737 20181213_JW_Orientia_Karp_1_2 86.898 20.216 15563000 5050400 2785600 4070400 0 1485800 2171000 0 0 10553 1071 9032 64346;64347;64348;64349;64350;64351 41063;41064 41063 2 YICDNQDTISSK Unmodified 1442.6348 0.63475872 792 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33.791 34.124 2 1.9216E-30 9645 20181213_JW_Orientia_Karp_3_1 242.45 99.463 366140000 60193000 67065000 49612000 35880000 14928000 0 138460000 0 + 10554 792 9033 64352;64353;64354;64355;64356;64357;64358 41065;41066;41067;41068;41069;41070 41069 6 YICDNQDTISSK Deamidation (NQ) 1443.6188 0.61877431 792 CON__P02769 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 37.316 37.766 2 0.0099293 11675 20181213_JW_Orientia_Karp_1_2 107.03 16.877 20933000 0 3668900 0 2683900 0 984170 13596000 0 + 10555 792 9033 64359;64360;64361;64362 41071;41072 41071 272;1650 2 YICENQDSISSK Unmodified 1442.6348 0.63475872 620 F6KPG5;CON__P02768-1;B4DPP6;P02768;A8K9P0;Q56G89;B2RBS8;B7WNR0;B4DPR2;C9JKR2;H0YA55;D6RHD5;P02768-2 ALB Serum albumin yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 1 32.349 32.707 2 1.3831E-16 9599 20181213_JW_Orientia_Karp_1_1 217.22 72.575 108870000 82282000 5306300 2723500 9595700 937280 753390 6480900 793230 + 10556 620 9034 64363;64364;64365;64366;64367;64368;64369;64370;64371 41073;41074;41075;41076;41077 41073 5 YIDEGIEIGEIK Unmodified 1377.7028 0.70276193 1373 Karp_02079 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 57.044 57.389 2 1.4619E-05 21690 20181213_JW_Orientia_Karp_2_1 200.71 136.67 101420000 18375000 21688000 20271000 8899900 9602100 11069000 889310 10621000 10557 1373 9035 64372;64373;64374;64375;64376;64377;64378;64379 41078;41079;41080;41081;41082;41083;41084;41085;41086 41081 9 YIDTQNAK Unmodified 951.46616 0.46616048 1359 Karp_01808 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 21.776 22.106 2 0.03946 4567 20181213_JW_Orientia_Karp_1_2 77.318 3.7013 7264100 0 2878200 0 980700 683400 1023900 1697900 0 10558 1359 9036 64380;64381;64382;64383;64384 41087 41087 1 YIELLTR Unmodified 906.51747 0.51746776 1601 Q4LE79;P15924-2;P15924-3;P15924;B4E2A0;B4DKX6 DSP variant protein;DSP Desmoplakin yes no 0 0 0 0 By MS/MS By MS/MS 1 1 50.476 50.677 2 0.02359 17915 20181213_JW_Orientia_Karp_2_2 97.798 47.166 8485600 0 0 0 0 3257500 5228100 0 0 10559 1601 9037 64385;64386 41088;41089 41088 2 YIFDNVAK Unmodified 968.49673 0.49673232 1805 V9HW95;Q15293;Q15293-2 HEL-S-84;RCN1 Reticulocalbin-1 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 48.13 48.467 2 0.030313 16861 20181213_JW_Orientia_Karp_2_3 82.452 16.379 32017000 0 10962000 5268000 10507000 0 5280300 0 0 10560 1805 9038 64387;64388;64389;64390 41090 41090 1 YIFLVQR Unmodified 937.53854 0.53853756 1240 Karp_00907 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.59 53.856 2 0.011575 21370 20181213_JW_Orientia_Karp_1_2 119.7 78.755 296630000 84621000 69528000 55192000 26215000 19588000 41491000 0 0 10561 1240 9039 64391;64392;64393;64394;64395;64396 41091;41092;41093;41094;41095;41096 41092 6 YIGTGHADTTK Unmodified 1162.5619 0.56185177 1966 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 19.061 19.31 2 0.012192 3425 20181213_JW_Orientia_Karp_2_1 90.149 48.719 1818800 0 700970 0 519170 0 598620 0 0 10562 1966 9040 64397;64398;64399;64400 41097;41098 41098 2 YIIFATK Unmodified 854.49019 0.49019038 1139 Karp_00451 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 49.208 49.527 2 0.017678 18451 20181213_JW_Orientia_Karp_1_2 106.42 47.754 106160000 15744000 36032000 0 34110000 4603200 13876000 0 1791500 10563 1139 9041 64401;64402;64403;64404;64405;64406 41099;41100 41099 2 YIILQDNGIGMNK Deamidation (NQ) 1478.7439 0.74391524 1251 Karp_00928 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 59.225 59.527 2 0.00010341 25374 20181213_JW_Orientia_Karp_1_1 169.82 69.805 56566000 22381000 23066000 0 2549000 3900300 2885800 0 1784700 10564 1251 9042 64407;64408;64409;64410;64411;64412 41101;41102;41103 41101 652;1823 3 YIILQDNGIGMNK Oxidation (M);Deamidation (NQ) 1494.7388 0.73882986 1251 Karp_00928 yes yes 0 1 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 1 54.058 54.366 2 0.0020307 18910 20181213_JW_Orientia_Karp_3_2 141.91 58.049 85887000 22956000 21012000 14287000 7372700 10843000 6742300 0 2674200 10565 1251 9042 64413;64414;64415;64416;64417;64418;64419;64420;64421;64422 41104;41105;41106;41107;41108;41109;41110 41110 652;1823 812 7 YILGNPLTPGVTQGPQIDK Unmodified 2010.0786 0.078591257 1538 V9HW83;V9HVX6;P00352;B4DXX3;B4DDF8 HEL-S-53e;HEL-9;ALDH1A1 Retinal dehydrogenase 1 yes no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 63.055 63.313 2 0.00015002 26985 20181213_JW_Orientia_Karp_1_3 150.05 94.65 70242000 22186000 14868000 19385000 200010 5898600 3868400 0 3835900 10566 1538 9043 64423;64424;64425;64426;64427;64428;64429 41111;41112;41113;41114 41112 4 YILHASTK Unmodified 931.51272 0.51271674 1424 Karp_02310 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 23.827 24.163 2 0.011375 5375 20181213_JW_Orientia_Karp_1_3 101.6 27.984 18944000 2678500 5213800 2495700 1807900 1431000 1419100 2276600 1621500 10567 1424 9044 64430;64431;64432;64433;64434;64435;64436;64437 41115;41116;41117 41117 3 YINAYITEIPELALQAAK Unmodified 2020.0881 0.088093311 1318 Karp_01280 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.992 74.009 2 1.5264E-23 29870 20181213_JW_Orientia_Karp_2_2 262.37 209 333680000 93777000 70435000 126280000 0 7172600 12566000 23444000 0 10568 1318 9045 64438;64439;64440;64441;64442;64443 41118;41119;41120;41121;41122;41123 41121 6 YINAYITEIPELALQAAK Deamidation (NQ) 2021.0721 0.072108896 1318 Karp_01280 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 74.945 74.966 2 5.9494E-07 34887 20181213_JW_Orientia_Karp_1_1 162.64 125.7 100450000 28731000 18863000 33017000 1564900 5348800 3579000 9346800 0 10569 1318 9045 64444;64445;64446;64447;64448;64449;64450 41124;41125;41126;41127;41128 41124 755 5 YINEHIASQLMQIVK Oxidation (M) 1801.9397 0.93965493 1428 Karp_02381 yes yes 0 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 53.265 53.565 3 0.00017933 19337 20181213_JW_Orientia_Karp_2_2 146.84 93.09 73554000 0 25050000 20369000 7371400 10995000 9770100 0 0 10570 1428 9046 64451;64452;64453;64454;64455 41129;41130;41131;41132;41133 41132 1036 5 YINEHIASQLMQIVK Unmodified 1785.9447 0.94474031 1428 Karp_02381 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 59.614 59.974 3 6.0286E-14 25360 20181213_JW_Orientia_Karp_1_2 206.67 130.7 57943000 0 27228000 10495000 1431000 13968000 0 4821000 0 10571 1428 9046 64456;64457;64458;64459;64460;64461 41134;41135;41136;41137 41134 4 YIPQLHLSGIK Unmodified 1267.7289 0.72885752 1303 Karp_01240 yes yes 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 48.782 49.032 3 0.034544 17126 20181213_JW_Orientia_Karp_2_3 53.237 5.1464 57032000 18232000 9844900 6648400 12220000 1814200 8272600 0 0 10572 1303 9047 64462;64463;64464;64465;64466;64467 41138 41138 1 YIQEAGNPK Unmodified 1018.5084 0.50835964 1353 Karp_01624 yes yes 0 0 0 0 By MS/MS 1 23.68 23.929 2 0.020669 5295 20181213_JW_Orientia_Karp_1_2 99.815 28.999 0 0 0 0 0 0 0 0 0 10573 1353 9048 64468 41139 41139 1 YIRDEQIEQLQEK Unmodified 1690.8526 0.85261407 1439 Karp_02406 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 2 2 37.7 37.995 2;3 2.4252E-23 11719 20181213_JW_Orientia_Karp_1_3 228.61 84.435 492890000 140920000 13922000 229890000 2726900 2903300 10974000 91565000 0 10574 1439 9049 64469;64470;64471;64472;64473;64474;64475;64476;64477;64478;64479 41140;41141;41142;41143;41144;41145;41146 41142 7 YISLIYTNYEAGK Unmodified 1533.7715 0.7715102 1574 V9HWE9;P09211;C7DJS1 HEL-S-22;GSTP1 Glutathione S-transferase P yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 57.732 57.998 2 0.0004227 23895 20181213_JW_Orientia_Karp_1_3 179.94 115.64 32566000 9000500 21894000 0 1671100 0 0 0 0 10575 1574 9050 64480;64481;64482;64483;64484;64485 41147;41148;41149;41150 41149 4 YISPDQLADLYK Unmodified 1424.7187 0.71874635 93 A0A024R4F1;P06733;E2DRY6;P06733-2 ENO1 Alpha-enolase;Enolase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 62.752 63.047 2 0.00018034 27492 20181213_JW_Orientia_Karp_1_1 160.67 72.179 146660000 27668000 27884000 33567000 5315900 27361000 18222000 50797 6588900 10576 93 9051 64486;64487;64488;64489;64490;64491;64492;64493 41151;41152;41153;41154;41155;41156;41157 41151 7 YITIIPGIEENYIADK Unmodified 1850.9666 0.96658119 1180 Karp_00655 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1 1 1 70.621 70.76 2 0.0059482 28342 20181213_JW_Orientia_Karp_2_2 96.745 74.211 55707000 6416600 15040000 11312000 366730 5657600 5736900 10204000 973460 10577 1180 9052 64494;64495;64496;64497;64498;64499;64500;64501;64502 41158;41159;41160;41161;41162;41163 41162 6 YKPDYADAYYMK Unmodified 1526.6752 0.67516697 1186 Karp_02088;Karp_00690 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 41.529 41.711 3 0.020233 13795 20181213_JW_Orientia_Karp_1_2 110.98 84.746 105470000 31792000 35252000 38422000 0 0 0 0 0 10578 1186 9053 64503;64504;64505 41164;41165;41166 41165 3 YKPDYADAYYMK Oxidation (M) 1542.6701 0.67008159 1186 Karp_02088;Karp_00690 yes no 0 0 1 1 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 36.863 37.153 3 0.0016205 11004 20181213_JW_Orientia_Karp_3_1 136.27 102.22 112800000 45860000 31782000 15375000 0 6257300 0 13523000 0 10579 1186 9053 64506;64507;64508;64509;64510 41167;41168 41168 752 2 YKPDYAEAYYNK Unmodified 1523.6933 0.69325988 1186 Karp_02088;Karp_00690 no no 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 1 35.738 36.084 2;3 0.0019703 10499 20181213_JW_Orientia_Karp_3_1 123.26 83.861 250440000 57866000 90307000 58493000 7546600 0 3350400 27930000 4943200 10580 1186 9054 64511;64512;64513;64514;64515;64516;64517;64518;64519;64520;64521;64522;64523 41169;41170;41171;41172;41173 41173 5 YKPLDLRPK Unmodified 1128.6655 0.66552898 1670 P42766 RPL35 60S ribosomal protein L35 yes yes 0 0 0 2 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 30.623 31.099 3 0.010231 7223 20181213_JW_Orientia_Karp_3_2 120.31 79.582 103050000 0 74263000 0 5045100 4933900 0 18810000 0 10581 1670 9055 64524;64525;64526;64527;64528 41174;41175 41175 2 YKPNFAENYLEK Unmodified 1514.7405 0.74054442 1264 Karp_01053 yes yes 0 0 0 1 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 42.899 43.219 3 0.032266 14308 20181213_JW_Orientia_Karp_1_3 101.45 56.605 40362000 0 18758000 14239000 0 373150 125890 6867200 0 10582 1264 9056 64529;64530;64531;64532;64533 41176;41177 41176 2 YKPNYSEAYVYK Unmodified 1523.7296 0.72964538 1340 Karp_01512 yes yes 0 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 36.368 36.658 3 0.028867 11107 20181213_JW_Orientia_Karp_1_3 81.278 52.845 43582000 10794000 10150000 14085000 0 1929100 0 6623500 0 10583 1340 9057 64534;64535;64536;64537;64538 41178 41178 1 YLAEFATGNDR Unmodified 1255.5833 0.5833155 1728 V9HW98;P62258;G9K389;G9K388;P62258-2;B7ZA86;K7EM20;B3KT37 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 45.125 45.518 2 0.00015922 15092 20181213_JW_Orientia_Karp_2_1 157.66 115.27 68390000 0 30624000 0 13612000 14864000 6632500 1547300 1110000 10584 1728 9058 64539;64540;64541;64542;64543;64544;64545 41179;41180;41181 41181 3 YLAEFATGNDRK Unmodified 1383.6783 0.67827852 1728 V9HW98;P62258;G9K389;G9K388;P62258-2;B7ZA86;K7EM20;B3KT37 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 36.097 36.387 3 0.007057 10973 20181213_JW_Orientia_Karp_1_3 89.561 61.888 99220000 29497000 41904000 14572000 0 0 1965700 11282000 0 10585 1728 9059 64546;64547;64548;64549;64550 41182;41183;41184;41185 41183 4 YLAEFATGNDRK Deamidation (NQ) 1384.6623 0.6622941 1728 V9HW98;P62258;G9K389;G9K388;P62258-2;B7ZA86;K7EM20;B3KT37 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 0 1 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 40.615 40.903 3 0.0058529 13381 20181213_JW_Orientia_Karp_1_2 98.182 54.578 99572000 58617000 22750000 0 0 3322800 0 14882000 0 10586 1728 9059 64551;64552;64553;64554;64555 41186;41187 41186 1140 2 YLAEVAAGDDK Unmodified 1150.5506 0.55061839 824 D0PNI1;P63104;E7EX29;B0AZS6;P63104-2;B7Z2E6;H0YB80 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 1 38.091 38.436 2 0.0016132 11536 20181213_JW_Orientia_Karp_2_1 120.45 68.503 97272000 27551000 22065000 20482000 5736100 6354600 0 12308000 2775900 10587 824 9060 64556;64557;64558;64559;64560;64561;64562;64563;64564 41188;41189;41190;41191;41192;41193;41194;41195;41196 41191 9 YLAEVAAGDDKK Unmodified 1278.6456 0.6455814 824 D0PNI1;P63104;E7EX29;B0AZS6;P63104-2;B7Z2E6;H0YB80 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 30.047 30.424 3 0.013284 8121 20181213_JW_Orientia_Karp_1_3 121.21 55.645 61250000 27391000 12826000 12874000 0 0 311530 5067800 2780100 10588 824 9061 64565;64566;64567;64568;64569;64570 41197;41198;41199 41199 3 YLAEVATGDDK Unmodified 1180.5612 0.56118307 1651 P31947-2;P31947 SFN 14-3-3 protein sigma yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 38.173 38.373 2 0.00060029 12659 20181213_JW_Orientia_Karp_1_1 136.96 74.996 33001000 20857000 9922000 0 0 0 2222100 0 0 10589 1651 9062 64571;64572;64573 41200 41200 1 YLDFSSIITEVR Unmodified 1441.7453 0.74529545 818 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4;Q8N1N4-2;F8VS93;B4DQ49 KRT78 Keratin, type II cytoskeletal 78 yes no 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 73.216 73.29 2 0.0015936 27128 20181213_JW_Orientia_Karp_3_1 126.71 73.38 7258600 0 0 1899100 0 0 0 5359500 0 + 10590 818 9063 64574;64575;64576 41201;41202 41202 2 YLDGLTAER Unmodified 1036.5189 0.51892433 804;1657 CON__P35908;P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 0 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 44.159 44.553 2 0.00081965 13963 20181213_JW_Orientia_Karp_3_2 134.77 63.853 138800000 0 71966000 0 14346000 12988000 4334300 32961000 2205300 + 10591 804;1657 9064 64577;64578;64579;64580;64581;64582 41203;41204;41205;41206 41206 4 YLEANMTQSALPK Oxidation (M) 1480.7232 0.7231798 1031 J3KQ32;Q9NTK5;Q53SQ6;Q9NTK5-2 OLA1;PTD004 Obg-like ATPase 1 yes no 0 0 1 0 By MS/MS 1 41.15 41.349 2 0.026702 13484 20181213_JW_Orientia_Karp_1_3 93.839 53.991 0 0 0 0 0 0 0 0 0 10592 1031 9065 64583 41207 41207 564 1 YLECSALTQR Unmodified 1239.5918 0.59177169 302 A4D2P2;A4D2P1;A4D2P0;P63000;P63000-2;P60763;J3KSC4;J3QLK0;B1AH77;B1AH80;A0A024R1P2;P15153;B1AH78 RAC1;RAC3;RAC2 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3;Ras-related C3 botulinum toxin substrate 2 yes no 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 40.102 40.48 2 0.013994 12306 20181213_JW_Orientia_Karp_3_2 94.409 6.9331 64296000 5036900 30590000 0 0 0 0 11294000 17376000 10593 302 9066 64584;64585;64586;64587 41208 41208 1 YLELLGYR Unmodified 1025.5546 0.55458155 256 H7BXG7;A0A024RDH6;A0A024RDD3;D6REX3;O94979-7;O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;H0YAB3;D6RHZ5;H0Y9K1;H0Y8V7;O94979-5 SEC31A;SEC31L1 Protein transport protein Sec31A yes no 0 0 0 0 By MS/MS By MS/MS By matching 1 1 1 59.042 59.192 2 0.011571 24491 20181213_JW_Orientia_Karp_1_3 101.28 56.889 5991700 2386200 0 2639800 0 0 965670 0 0 10594 256 9067 64588;64589;64590 41209;41210 41210 2 YLGLLENLR Unmodified 1089.6182 0.61824444 1488 O00159;D3DTH7;F5H6E2;B7Z3E5;O00159-2;O00159-3;B7Z9C0;A1L180 MYO1C Unconventional myosin-Ic yes no 0 0 0 0 By MS/MS By matching 1 1 61.492 61.767 2 0.011402 26577 20181213_JW_Orientia_Karp_1_2 91.318 17.702 2296700 0 1145500 1151200 0 0 0 0 0 10595 1488 9068 64591;64592 41211 41211 1 YLGPAVLMQAYR Oxidation (M) 1396.7173 0.71730656 1618 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 1 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 55.095 55.425 2 0.0039724 22431 20181213_JW_Orientia_Karp_1_2 109.48 65.169 21273000 4281500 4495100 6047100 0 3394400 2465700 112820 475960 10596 1618 9069 64593;64594;64595;64596;64597;64598;64599 41212;41213 41212 1243 2 YLGSDFQVVASYGHVR Unmodified 1796.8846 0.8845829 1109 Karp_00291 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.691 54.012 3 0.00017507 21866 20181213_JW_Orientia_Karp_1_1 135.91 99.466 180330000 60453000 51655000 34599000 9226300 8354000 15979000 59746 0 10597 1109 9070 64600;64601;64602;64603;64604;64605;64606 41214;41215;41216;41217;41218 41214 5 YLHPPPHLK Unmodified 1100.6131 0.61309948 776 C9JP00;Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56;H7C4T5;Q86VM6;C9J4T8;B1AKI6;Q9NUK0-4;Q9NUK0-3;Q9NUK0-2;Q9NUK0 MBNL1;MBNL3 Muscleblind-like protein 1;Muscleblind-like protein 3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 25.547 25.892 3 0.0010954 5032 20181213_JW_Orientia_Karp_3_2 113.89 43.89 44650000 8989500 7581900 2440600 2875500 4314000 2256400 12893000 3299000 10598 776 9071 64607;64608;64609;64610;64611;64612;64613;64614 41219;41220;41221;41222;41223;41224;41225;41226 41226 8 YLIATSEQPIAALHR Unmodified 1681.9152 0.91515474 1685 Q0VGA5;Q53HA4;Q5T5C7;P49591 SARS Serine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 51.204 51.504 3 0.0396 18322 20181213_JW_Orientia_Karp_2_2 65.805 26.296 74893000 0 26064000 22533000 10619000 6545200 9131900 0 0 10599 1685 9072 64615;64616;64617;64618;64619 41227 41227 1 YLIGELVSSK Unmodified 1107.6176 0.61757574 663 B4DYE2;Q59HG1;O95239-2;O95239;Q2VIQ3;B3KNC0 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 58.511 58.711 2 0.042465 24488 20181213_JW_Orientia_Karp_1_2 71.501 23.758 74185000 41474000 12809000 17963000 0 1938400 0 0 0 10600 663 9073 64620;64621;64622;64623 41228 41228 1 YLINGVNANNTR 4 Deamidation (NQ) 1351.6256 0.62557424 41 Q6P712;Q05D74;A0JLM9;Q32Q15;Q6IPS5;Q2KQ72;Q05BV1;B7ZLZ7;B3KMB1;A8K984;A0A024R158;O95347-2;O95347 SMC2;SMC2L1 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 0 4 0 0 By MS/MS 1 56.027 56.027 2 0.019972 23135 20181213_JW_Orientia_Karp_1_1 65.347 10.93 3795100 3795100 0 0 0 0 0 0 0 10601 41 9074 64624 41229 41229 7;8;9;10 0 YLIPNATQPESK Unmodified 1359.7034 0.70343063 1650 V9HWD6;P31946-2;P31946;B5BU24 HEL-S-1;YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS 1 44.711 45.061 2 0.0052661 15753 20181213_JW_Orientia_Karp_1_2 123.62 60.335 0 0 0 0 0 0 0 0 0 10602 1650 9075 64625 41230 41230 1 YLIPSIQQR Unmodified 1116.6291 0.62914348 1118 Karp_00308 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.227 51.572 2 0.032918 19810 20181213_JW_Orientia_Karp_1_2 76.221 44.287 361870000 99176000 103990000 62969000 43472000 20711000 26483000 3779400 1283500 10603 1118 9076 64626;64627;64628;64629;64630;64631;64632;64633 41231;41232 41232 2 YLKHNSSGEQSGNAVPKR 2 Deamidation (NQ) 1972.9603 0.96026704 1001 H7C0Z7 TBC1D1 yes yes 0 2 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 49.721 50.066 2 0.018588 16860 20181213_JW_Orientia_Karp_3_1 96.82 55.136 97356000 12090000 27781000 14194000 17811000 8990800 6827800 4622500 5039100 10604 1001 9077 64634;64635;64636;64637;64638;64639;64640;64641 41233 41233 366;1756 1 YLLDVLSVCNNIK Unmodified 1549.8174 0.81741453 1058 Karp_00002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 69.224 69.334 2 2.3939E-07 30905 20181213_JW_Orientia_Karp_1_3 186.87 104.58 30449000 9180500 0 4092600 0 4191400 2880000 10104000 0 10605 1058 9078 64642;64643;64644;64645;64646;64647;64648 41234;41235;41236;41237;41238 41236 5 YLLEQDFPGMR Oxidation (M) 1383.6493 0.64928657 185 A8K9B9;A0A024R9N6;Q9H223 EHD4 EH domain-containing protein 4 no no 0 0 1 0 By matching By MS/MS 1 1 55.058 55.157 2 0.0043811 21920 20181213_JW_Orientia_Karp_1_3 104.22 66.663 33388000 10276000 0 23112000 0 0 0 0 0 10606 185 9079 64649;64650 41239 41239 142 1 YLLNLNLEPFSEK Unmodified 1578.8294 0.82935943 582 B4DIT7;V9HWG3;P21980;B4DTN7 HEL-S-45;TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 72.246 72.341 2 1.9718E-11 33199 20181213_JW_Orientia_Karp_1_1 203.03 104.99 222100000 77255000 40946000 38936000 6308400 12515000 6238400 31002000 8902500 10607 582 9080 64651;64652;64653;64654;64655;64656;64657;64658;64659 41240;41241;41242;41243;41244;41245;41246;41247;41248 41240 9 YLLNYFPELMQK Unmodified 1557.7901 0.79013715 1449 Karp_02529 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 72.079 72.179 2 0.0023175 28983 20181213_JW_Orientia_Karp_3_2 164.33 100.91 158540000 65462000 16902000 32180000 10566000 11498000 0 21932000 0 10608 1449 9081 64660;64661;64662;64663;64664;64665;64666 41249;41250;41251 41251 3 YLLNYFPELMQK Oxidation (M) 1573.7851 0.78505177 1449 Karp_02529 yes yes 0 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.21 67.372 2 1.8979E-07 29630 20181213_JW_Orientia_Karp_1_3 185.61 125.51 65043000 21810000 0 15965000 0 12635000 7600800 0 7031600 10609 1449 9081 64667;64668;64669;64670;64671;64672;64673 41252;41253;41254;41255;41256;41257 41253 1058 6 YLLPLIGGEEVR Unmodified 1357.7606 0.76055158 1285 Karp_01156 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 68.224 68.432 2 0.00045913 30283 20181213_JW_Orientia_Karp_1_3 151.22 112.19 125680000 36185000 27380000 18687000 4403400 10011000 6971600 14765000 7277800 10610 1285 9082 64674;64675;64676;64677;64678;64679;64680;64681 41258;41259;41260;41261;41262;41263;41264;41265 41260 8 YLMPYGVQ Unmodified 969.46299 0.46298935 1250 Karp_00927 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 63.215 63.49 2 0.0082767 27776 20181213_JW_Orientia_Karp_1_1 122.15 89.314 9643800 0 2690700 6953100 0 0 0 0 0 10611 1250 9083 64682;64683;64684;64685 41266;41267;41268 41266 3 YLMPYGVQ Oxidation (M) 985.4579 0.45790397 1250 Karp_00927 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 53.041 53.341 2 0.0042121 19328 20181213_JW_Orientia_Karp_2_1 121.68 76.992 84981000 0 20187000 18949000 16030000 4996800 24818000 0 0 10612 1250 9083 64686;64687;64688;64689;64690 41269;41270;41271;41272 41271 809 4 YLQEVIDVLETDGHFR Unmodified 1932.9581 0.95814177 390 B4DZX0;Q53GX6;A8K7Q1;Q02818;C9JKZ2;C9JBD3;C9J3C1;H7BZI1 NUCB1 Nucleobindin-1 yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 68.881 69.031 3 0.036096 27418 20181213_JW_Orientia_Karp_2_2 48.547 17.157 13494000 0 0 0 0 8809400 2273600 2410900 0 10613 390 9084 64691;64692;64693 41273 41273 1 YLQQFIEHLANWR Unmodified 1716.8736 0.87362428 1415 Karp_02252 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 65.865 66.061 2;3 0.00024349 29053 20181213_JW_Orientia_Karp_1_2 193.28 143.86 244430000 79849000 41447000 20480000 5247900 58144000 18331000 20935000 0 10614 1415 9085 64694;64695;64696;64697;64698;64699;64700;64701;64702;64703;64704;64705;64706 41274;41275;41276;41277;41278;41279;41280;41281 41275 8 YLQQVIDTEQDLELK Unmodified 1833.936 0.93600934 1437 Karp_02402 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 61.17 61.491 2 1.3249E-08 26282 20181213_JW_Orientia_Karp_1_2 218.11 116.82 269500000 37545000 56516000 86294000 10935000 34669000 23536000 7871100 12134000 10615 1437 9086 64707;64708;64709;64710;64711;64712;64713;64714 41282;41283;41284;41285;41286;41287;41288;41289;41290 41284 9 YLQTLTTIAAEK Unmodified 1350.7395 0.73948179 160 B4E2V5;B4DZK8;A0A024R882;P27105;P27105-2;B4E310 STOM Erythrocyte band 7 integral membrane protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.25 51.595 2 4.9542E-17 20227 20181213_JW_Orientia_Karp_1_1 228.83 162.15 467240000 136800000 94735000 94654000 41920000 24269000 38765000 26041000 10050000 10616 160 9087 64715;64716;64717;64718;64719;64720;64721;64722 41291;41292;41293;41294;41295;41296;41297;41298;41299 41291 9 YLSDHSFLVSQGDR Unmodified 1622.7689 0.76888444 1466;1549 L8E853;H2DLA2;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 45.218 45.393 3 0.010296 14836 20181213_JW_Orientia_Karp_2_2 94.547 52.709 297290000 146070000 79671000 63051000 0 8498100 0 0 0 10617 1466;1549 9088 64723;64724;64725;64726 41300;41301;41302 41302 3 YLSDTTINR Unmodified 1081.5404 0.54038805 1286 Karp_01157 yes yes 0 0 0 0 By matching By MS/MS 1 1 35.94 36.039 2 0.040513 10738 20181213_JW_Orientia_Karp_1_3 72.23 26.895 20990000 10483000 0 10508000 0 0 0 0 0 10618 1286 9089 64727;64728 41303 41303 1 YLSEVASGDNK Unmodified 1181.5564 0.55643205 1650 V9HWD6;P31946-2;P31946;B5BU24 HEL-S-1;YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.145 32.428 2 2.4464E-07 9038 20181213_JW_Orientia_Karp_1_3 189.18 48.825 56873000 22011000 0 16708000 0 0 0 18154000 0 10619 1650 9090 64729;64730;64731;64732;64733;64734;64735;64736 41304;41305;41306;41307;41308;41309;41310;41311;41312;41313 41306 10 YLSNAYAR Unmodified 956.47158 0.4715802 1491 Q5SRT3;Q53FB0;O00299 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS 1 1 1 1 30.863 31.413 2 0.0053899 8885 20181213_JW_Orientia_Karp_1_1 161.68 109.28 39752000 0 22120000 0 5601500 0 0 12030000 0 10620 1491 9091 64737;64738;64739;64740 41314;41315 41314 2 YLSQQLQCPQLSR 3 Deamidation (NQ) 1622.761 0.76102187 1005 H7C2W1 BDH1 yes yes 0 3 0 0 By MS/MS 1 44.556 45.207 2 0.024678 14917 20181213_JW_Orientia_Karp_3_1 72.325 9.1091 0 0 0 0 0 0 0 0 0 10621 1005 9092 64741 41316 41316 1759;1760;1761 1 YLSQSNAELLQGESDFK Unmodified 1927.9163 0.91633654 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 1 53.76 54.065 2;3 1.8994E-83 21374 20181213_JW_Orientia_Karp_1_2 294.26 228.63 906830000 330760000 201830000 202160000 48209000 48483000 39072000 29479000 6836900 10622 1251 9093 64742;64743;64744;64745;64746;64747;64748;64749;64750;64751;64752;64753 41317;41318;41319;41320;41321;41322;41323;41324;41325;41326 41318 10 YLSQSNAELLQGESDFK Deamidation (NQ) 1928.9004 0.90035212 1251 Karp_00928 yes yes 0 1 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 57.93 58.18 2 5.8873E-09 24467 20181213_JW_Orientia_Karp_1_1 177.39 124.6 71162000 23940000 17974000 14348000 5760500 0 9139200 0 0 10623 1251 9093 64754;64755;64756;64757;64758 41327;41328 41327 654 2 YLSYTLNPDLIR Unmodified 1466.7769 0.77692993 234;613 A0A024RC61;Q59E93;P15144;B4DV63;B4DP96;B4DPH5;B4DP01 ANPEP Aminopeptidase N no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 2 62.91 63.126 2 5.2307E-40 26856 20181213_JW_Orientia_Karp_1_3 259.08 176.44 41878000 11705000 3028500 19935000 541570 3487200 3181000 0 0 10624 234;613 9094 64759;64760;64761;64762;64763;64764;64765;64766;64767 41329;41330;41331;41332;41333;41334;41335 41331 6 YLTNAYSR Unmodified 986.48214 0.48214489 1863 Q6FIC5;Q9Y696;B4DWC4;B3KTR3 CLIC4 Chloride intracellular channel protein;Chloride intracellular channel protein 4 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.241 32.599 2 0.0075273 9125 20181213_JW_Orientia_Karp_1_3 111.74 49.025 162050000 39058000 67893000 32374000 4392100 2786900 2589600 10479000 2479300 10625 1863 9095 64768;64769;64770;64771;64772;64773;64774;64775 41336;41337;41338;41339;41340;41341 41337 6 YLTVAAVFR Unmodified 1038.5862 0.58621603 1566;1747;1550 P04350;B4DJ43;B4DE77;B4DFH6;Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DMU8;Q9BUU9;B4E052;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;Q8IWP6;P68371;Q8N6N5;B3KML9;Q96HX0;A4UCT2 TUBB4A;TUBB;XTP3TPATP1;TUBB2C;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 58.394 58.681 2 4.0551E-05 24232 20181213_JW_Orientia_Karp_1_3 193.28 103.91 311850000 134900000 46804000 80931000 1795500 11112000 25928000 0 10381000 10626 1550;1566;1747 9096 64776;64777;64778;64779;64780;64781;64782 41342;41343;41344;41345;41346;41347 41344 6 YLTVATVFR Unmodified 1068.5968 0.59678072 1964 Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 TUBB6 Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By matching By MS/MS 1 1 1 57.304 57.604 2 0.022263 21769 20181213_JW_Orientia_Karp_2_3 82.75 33.995 26404000 0 1220100 0 0 0 25184000 0 0 10627 1964 9097 64783;64784;64785 41348;41349 41349 2 YLWNNIK Unmodified 949.50215 0.50215205 1552 P04632;K7ELJ7;K7EIV0;A0A075B7C0;U3KQE2;K7EKD8;U3KPR7;Q96L46 CAPNS1;CAPNS2 Calpain small subunit 1;Calpain small subunit 2 yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 49.255 49.607 2 0.022365 16340 20181213_JW_Orientia_Karp_3_2 99.384 40.723 88635000 0 29341000 15428000 27515000 2507700 10626000 0 3217400 10628 1552 9098 64786;64787;64788;64789;64790;64791 41350 41350 1 YLYTEDDINQLLK Unmodified 1626.8141 0.8141033 1428 Karp_02381 yes yes 0 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 65.137 65.337 2 0.014646 28296 20181213_JW_Orientia_Karp_1_3 107.34 53.001 105390000 44717000 4949300 28530000 0 0 0 27191000 0 10629 1428 9099 64792;64793;64794;64795 41351 41351 1 YLYTLVITDK Unmodified 1227.6751 0.67509062 167 J3KT73;J3QL01;A0A024R8P8;P63173 RPL38 60S ribosomal protein L38 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 59.984 60.277 2 2.9282E-12 25530 20181213_JW_Orientia_Karp_1_2 217.64 166.57 157440000 34402000 18816000 47785000 4506000 23838000 24917000 3180800 0 10630 167 9100 64796;64797;64798;64799;64800;64801;64802 41352;41353;41354;41355;41356;41357;41358;41359 41353 8 YMACCLLYR Oxidation (M) 1264.5403 0.54027017 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;A6NHL2-2;A6NHL2;Q71U36-2;Q71U36;Q53GA7;F5H5D3;Q9BQE3;B4DQK4;B7Z1K5;Q9UQM3;Q8N532 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 46.026 46.319 2 0.0090025 16824 20181213_JW_Orientia_Karp_1_1 92.467 52.92 135840000 36384000 31709000 34967000 7107500 0 3937000 0 21734000 10631 512;1887 9101 64803;64804;64805;64806;64807;64808 41360 41360 332 1 YMACCLLYR Unmodified 1248.5454 0.54535555 1887;512 B3KT06;B3KPS3;P68363;A8JZY9;P68363-2;P68366-2;P68366;B4DDU2;A6NHL2-2;A6NHL2;Q71U36-2;Q71U36;Q53GA7;F5H5D3;Q9BQE3;B4DQK4;B7Z1K5;Q9UQM3;Q8N532 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.296 50.546 2 0.00081771 19572 20181213_JW_Orientia_Karp_1_1 135.35 76.105 63649000 26036000 16955000 13094000 3656700 1598000 2308700 0 0 10632 512;1887 9101 64809;64810;64811;64812;64813;64814 41361;41362;41363 41361 3 YMIEVPLYK Oxidation (M) 1170.5995 0.59948283 1225 Karp_00892 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 56.722 56.988 2 0.0085974 23370 20181213_JW_Orientia_Karp_1_2 93.429 51.032 146880000 37449000 36157000 37283000 3854100 12474000 19660000 0 0 10633 1225 9102 64815;64816;64817;64818;64819;64820;64821 41364;41365;41366;41367;41368;41369 41365 789 6 YMIEVPLYK Unmodified 1154.6046 0.60456821 1225 Karp_00892 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.942 61.202 2 0.0078688 23488 20181213_JW_Orientia_Karp_2_2 98.299 57.27 89008000 55429000 9241800 11555000 0 5113000 4461700 0 3208700 10634 1225 9102 64822;64823;64824;64825;64826;64827 41370;41371;41372;41373;41374;41375 41373 6 YMIGVTYGGDDIPLSPYR Oxidation (M) 2031.9612 0.96117824 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 65.846 66.066 2 3.138E-42 25423 20181213_JW_Orientia_Karp_3_2 249.28 200.76 190730000 76254000 22734000 36416000 2517900 11854000 6423900 15190000 19335000 10635 1520 9103 64828;64829;64830;64831;64832;64833;64834;64835 41376;41377;41378;41379;41380;41381;41382;41383;41384 41383 1135 9 YMIGVTYGGDDIPLSPYR Unmodified 2015.9663 0.96626362 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 69.397 69.554 2 1.2727E-23 31504 20181213_JW_Orientia_Karp_1_1 220.32 173.97 94445000 22638000 20112000 26373000 1848200 3226500 3637200 12984000 3625700 10636 1520 9103 64836;64837;64838;64839;64840;64841;64842;64843 41385;41386;41387;41388;41389;41390;41391 41385 6 YMPNFIAEYEATIK Deamidation (NQ) 1689.796 0.79601039 1264 Karp_01053 yes yes 0 1 0 0 By matching By MS/MS 1 1 69.671 69.72 2 0.040819 30755 20181213_JW_Orientia_Karp_1_3 81.92 38.612 29282000 3698800 0 25583000 0 0 0 0 0 10637 1264 9104 64844;64845 41392 41392 0 YMPNLIEEYELTIK Oxidation (M) 1770.875 0.87498899 1323;1448 Karp_01308;Karp_02495 no no 0 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 67.03 67.238 2 0.016279 26819 20181213_JW_Orientia_Karp_2_1 85.973 33.806 50440000 15894000 11576000 0 5443600 9365600 3536300 1428800 3195400 10638 1323;1448 9105 64846;64847;64848;64849;64850;64851;64852 41393;41394 41394 886 2 YMSPEQISSQDYGK Unmodified 1631.7137 0.71373732 737 Q8IW76;B7ZKK7;P19525-2;P19525 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 44.156 44.421 2 0.021989 15361 20181213_JW_Orientia_Karp_1_2 84.169 33.815 15655000 2974800 9560400 2977600 0 0 0 0 142530 10639 737 9106 64853;64854;64855;64856 41395 41395 1 YMSPEQISSQDYGK Oxidation (M) 1647.7087 0.70865195 737 Q8IW76;B7ZKK7;P19525-2;P19525 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 0 0 1 0 By matching By MS/MS 1 1 38.56 38.834 2 0.0083745 12164 20181213_JW_Orientia_Karp_1_3 98.105 69.149 9262800 0 6802600 2460200 0 0 0 0 0 10640 737 9106 64857;64858 41396 41396 435 1 YMSPPAGNR Oxidation (M) 1007.4495 0.44946455 640 B4DU18;Q59EA3;P33151;I3L1J2;B4DTP0;Q4VAI4;P33151-2 CDH5 Cadherin-5 yes no 0 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 22.081 22.402 2 0.030056 4612 20181213_JW_Orientia_Karp_1_2 74.255 36.609 4859900 0 2949500 804240 0 351010 126590 628560 0 10641 640 9107 64859;64860;64861;64862;64863 41397 41397 1 YMWIGSITGEDVK Oxidation (M) 1513.7123 0.71228076 1372 Karp_02002 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 58.069 58.402 2 3.1479E-05 24678 20181213_JW_Orientia_Karp_1_1 173.24 128.08 280530000 61087000 81066000 71109000 17597000 17949000 17324000 49693 14350000 10642 1372 9108 64864;64865;64866;64867;64868;64869;64870;64871 41398;41399;41400;41401;41402;41403 41398 960 5 YMWIGSITGEDVK Unmodified 1497.7174 0.71736614 1372 Karp_02002 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 63.562 63.784 2 2.2397E-07 28005 20181213_JW_Orientia_Karp_1_1 187.42 134.93 157060000 52639000 37729000 50057000 2537800 7601800 6050300 441100 0 10643 1372 9108 64872;64873;64874;64875;64876;64877;64878 41404;41405;41406 41404 3 YNADGQDLDVIR Unmodified 1377.6525 0.6524577 1288 Karp_01160 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 48.01 48.397 2 0.011997 17441 20181213_JW_Orientia_Karp_1_3 94.538 45.557 27432000 0 0 13418000 10925000 2988500 0 100790 0 10644 1288 9109 64879;64880;64881;64882 41407 41407 1 YNAYIQGR Unmodified 983.48248 0.48247924 1223 Karp_00890 yes yes 0 0 0 0 By MS/MS By MS/MS 1 1 31.996 32.271 2 0.0065741 9425 20181213_JW_Orientia_Karp_1_1 114.78 68.654 24844000 22180000 0 0 2663800 0 0 0 0 10645 1223 9110 64883;64884 41408;41409 41408 2 YNDTFWK Unmodified 972.43413 0.43413207 1598 Q5CAQ5;V9HWP2;P14625;Q59FC6;B4DU71;B4DHT9;Q58FF3 TRA1;HEL-S-125m;HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 46.065 46.248 2 0.011919 16169 20181213_JW_Orientia_Karp_1_3 123.69 67.568 40290000 9698600 19892000 10700000 0 0 0 0 0 10646 1598 9111 64885;64886;64887 41410;41411;41412 41412 3 YNDYVLK Unmodified 913.45453 0.45453316 1251 Karp_00928 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.142 38.412 2 0.014268 12571 20181213_JW_Orientia_Karp_1_1 113.41 39.795 92551000 26349000 24383000 22167000 0 9256900 0 10395000 0 10647 1251 9112 64888;64889;64890;64891;64892;64893 41413;41414;41415;41416;41417 41413 5 YNDYVLK Deamidation (NQ) 914.43855 0.43854874 1251 Karp_00928 yes yes 0 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 41.656 41.998 2 0.032382 13361 20181213_JW_Orientia_Karp_3_1 106.36 29.51 48952000 0 19258000 18102000 391430 1895000 1638100 7667800 0 10648 1251 9112 64894;64895;64896;64897;64898;64899 41418 41418 655 1 YNEQHVPGSPFTAR Unmodified 1601.7587 0.7586541 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61 FLNA;FLJ00119 Filamin-A yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 1 38.22 38.492 2;3 0.0047555 11914 20181213_JW_Orientia_Karp_1_3 118.51 50.628 386190000 110610000 111870000 125800000 7036200 4854700 0 26019000 0 10649 1615 9113 64900;64901;64902;64903;64904;64905;64906;64907;64908;64909 41419;41420;41421;41422 41420 4 YNEQHVPGSPFTAR Deamidation (NQ) 1602.7427 0.74266969 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;Q8TES4;Q6NXF2;Q96C61 FLNA;FLJ00119 Filamin-A yes no 0 1 0 0 By MS/MS By matching By matching 1 1 1 41.78 42.013 3 0.031277 13952 20181213_JW_Orientia_Karp_1_2 79.885 17.192 29333000 0 10796000 15790000 0 2747900 0 0 0 10650 1615 9113 64910;64911;64912 41423 41423 1083 1 YNFVLQVAK Unmodified 1080.5968 0.59678072 1789 Q13201;E7EPG1;B7Z7R8 MMRN1 Multimerin-1;Platelet glycoprotein Ia*;155 kDa platelet multimerin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.229 54.545 2 0.00077541 21520 20181213_JW_Orientia_Karp_1_3 148.04 93.494 129820000 27418000 23522000 20909000 14113000 17686000 22764000 0 3404300 10651 1789 9114 64913;64914;64915;64916;64917;64918;64919 41424;41425;41426;41427;41428;41429;41430;41431 41427 8 YNGVFQECCQAEDK Deamidation (NQ) 1747.6818 0.68178527 792 CON__P02769 yes yes 0 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 4 3 4 4 2 43.118 43.431 2 1.9657E-11 14253 20181213_JW_Orientia_Karp_3_1 201.09 147.34 285500000 36460000 35591000 34679000 37418000 14865000 25896000 83855000 16738000 + 10652 792 9115 64920;64921;64922;64923;64924;64925;64926;64927;64928;64929;64930;64931;64932;64933;64934;64935;64936;64937;64938;64939;64940;64941;64942;64943;64944 41432;41433;41434;41435;41436;41437;41438;41439;41440;41441 41439 273;1651 10 YNIDLASISAHK Unmodified 1330.6881 0.68811492 1276 Karp_01108 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 47.546 47.796 3 0.0028875 17368 20181213_JW_Orientia_Karp_1_2 136.27 96.358 148780000 38135000 70240000 17910000 4625600 4971900 12896000 0 0 10653 1276 9116 64945;64946;64947;64948;64949;64950 41442;41443;41444;41445 41443 4 YNIKPIHVLGHSDIAYNR Unmodified 2109.112 0.11195707 1135 Karp_00415 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.813 41.086 4 0.0088319 12390 20181213_JW_Orientia_Karp_3_2 78.249 52.659 33815000 8208300 10220000 6500600 2989900 2202900 1453600 0 2239900 10654 1135 9117 64951;64952;64953;64954;64955;64956;64957 41446;41447;41448;41449;41450;41451;41452 41452 7 YNILGTNTIMDK Unmodified 1381.6912 0.69115139 595 B4DLR3;Q00839-2;Q00839;Q96BA7;B3KX72;Q7Z4Q5 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 55.851 56.2 2 6.7537E-08 23279 20181213_JW_Orientia_Karp_1_1 192.44 118.51 120410000 53078000 34193000 22529000 4828400 0 0 5780500 0 10655 595 9118 64958;64959;64960;64961;64962 41453;41454;41455;41456 41453 4 YNITSANNNGLFVLEVSPNSSWGR Deamidation (NQ) 2639.2616 0.26159401 1107 Karp_00285 yes yes 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 73.231 73.278 2;3 4.99E-15 29703 20181213_JW_Orientia_Karp_3_2 178.45 139.71 320690000 128810000 42908000 47334000 7595100 12368000 10521000 50149000 21007000 10656 1107 9119 64963;64964;64965;64966;64967;64968;64969;64970;64971;64972;64973;64974 41457;41458;41459;41460;41461;41462;41463 41463 473;474;475;476;477 6 YNITSANNNGLFVLEVSPNSSWGR 2 Deamidation (NQ) 2640.2456 0.2456096 1107 Karp_00285 yes yes 0 2 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 74.319 74.349 2;3 6.112E-29 27756 20181213_JW_Orientia_Karp_3_1 205.96 155.57 50710000 0 0 0 3662800 17197000 5611400 16508000 7730200 10657 1107 9119 64975;64976;64977;64978;64979;64980;64981;64982;64983 41464;41465;41466;41467;41468;41469;41470 41469 473;474;475;476;477 7 YNITSANNNGLFVLEVSPNSSWGR 3 Deamidation (NQ) 2641.2296 0.22962518 1107 Karp_00285 yes yes 0 3 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 1 1 2 1 2 1 75.816 75.807 2;3 0.0014637 28555 20181213_JW_Orientia_Karp_3_1 100.69 71.054 58342000 27561000 946040 8279500 0 7392300 1681400 10895000 1586300 10658 1107 9119 64984;64985;64986;64987;64988;64989;64990;64991;64992;64993 41471;41472 41472 473;474;475;476;477 2 YNLTPGEK Unmodified 920.46035 0.46034682 1134 Karp_00400 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.337 32.695 2 0.0090088 8898 20181213_JW_Orientia_Karp_3_1 107.01 40.014 63863000 21083000 17350000 12626000 3622200 3508000 1527200 2944600 1202500 10659 1134 9120 64994;64995;64996;64997;64998;64999;65000;65001 41473;41474;41475;41476;41477;41478;41479;41480 41479 8 YNPHFAEAYNNK Unmodified 1466.6579 0.65787742 1259 Karp_00993 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 32.301 32.634 3 0.014161 9145 20181213_JW_Orientia_Karp_1_3 81.676 44.251 21295000 5367800 4888100 4414500 1550100 933680 0 4140500 0 10660 1259 9121 65002;65003;65004;65005;65006;65007 41481 41481 1 YNPNCAEAYYR Unmodified 1419.5877 0.58774895 1448;1264;1355 Karp_02495;Karp_01053;Karp_01675 no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 37.684 38.026 2 0.00081822 11869 20181213_JW_Orientia_Karp_1_2 136.52 110.89 68982000 17525000 11239000 28261000 0 0 0 8070800 3886700 10661 1448;1264;1355 9122 65008;65009;65010;65011;65012 41482;41483 41483 2 YNPNFAENYLEK Unmodified 1500.6885 0.68850885 1323;1355 Karp_01308;Karp_01675 no no 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.551 51.896 2 3.7199E-11 19918 20181213_JW_Orientia_Karp_1_3 199.8 131.01 316160000 60834000 84044000 73232000 32926000 23568000 17695000 18563000 5295300 10662 1323;1355 9123 65013;65014;65015;65016;65017;65018;65019;65020 41484;41485;41486;41487;41488;41489;41490 41485 7 YNPNHADVYFNK Unmodified 1480.6735 0.67352749 1340 Karp_01512 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 34.828 35.201 3 0.0099569 9655 20181213_JW_Orientia_Karp_2_1 81.565 30.552 132430000 27143000 62562000 22353000 3956600 0 2370200 10887000 3160500 10663 1340 9124 65021;65022;65023;65024;65025;65026;65027 41491;41492;41493;41494;41495;41496 41494 6 YNPNHEDAYYNK Unmodified 1526.6426 0.64262129 1186 Karp_02088;Karp_00690 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 25.368 25.753 3 0.0075915 6070 20181213_JW_Orientia_Karp_1_2 85.522 53.882 16886000 3374100 6195600 0 2842800 0 1510200 1836800 1126900 10664 1186 9125 65028;65029;65030;65031;65032;65033 41497;41498;41499 41498 3 YNPNIISEHETMLK Unmodified 1687.824 0.82395647 1259;1145 Karp_00478;Karp_00993 no no 0 0 0 0 By MS/MS By matching By matching 1 1 1 45.504 45.687 3 0.03726 16446 20181213_JW_Orientia_Karp_1_1 48.659 0 65639000 18537000 23941000 23161000 0 0 0 0 0 10665 1145;1259 9126 65034;65035;65036 41500 41500 1 YNPNYPEAYLEK Unmodified 1499.6933 0.69325988 1259 Karp_00993 yes yes 0 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 48.409 48.719 2 0.0093106 17636 20181213_JW_Orientia_Karp_1_3 98.898 60.094 62617000 15386000 16482000 12604000 8126000 3446400 0 0 6572600 10666 1259 9127 65037;65038;65039;65040;65041;65042 41501;41502 41501 2 YNSLDLR Deamidation (NQ) 880.42905 0.42904669 298 Q6ZU41;Q68D69;E9PE96;A4D1A8;Q9Y6V0-2;Q9Y6V0-6;Q9Y6V0;Q9Y6V0-5 DKFZp779G1236;PCLO;LOC392742 Protein piccolo yes no 0 1 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 48.047 48.348 2 0.022339 17602 20181213_JW_Orientia_Karp_1_2 127.12 22.909 1328100000 221930000 307840000 387320000 236090000 30816000 137950000 0 6190100 10667 298 9128 65043;65044;65045;65046;65047;65048;65049 41503;41504;41505 41503 116 3 YNSSYPEAYYNK Unmodified 1497.6412 0.64122431 1152;1259;1264;1085 Karp_01552;Karp_00538;Karp_00993;Karp_01053;Karp_00200 no no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.827 39.144 2 1.7183E-30 12444 20181213_JW_Orientia_Karp_1_2 243.91 177.22 156440000 49386000 46450000 36098000 9818000 6916000 0 7772500 0 10668 1152;1259;1264;1085 9129 65050;65051;65052;65053;65054;65055 41506;41507;41508;41509;41510;41511;41512 41507 7 YNSSYPEAYYNK Deamidation (NQ) 1498.6252 0.62523989 1152;1259;1264;1085 Karp_01552;Karp_00538;Karp_00993;Karp_01053;Karp_00200 no no 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 2 1 42.717 43.056 2 0.00072511 13827 20181213_JW_Orientia_Karp_1_3 153.34 104.92 74891000 18979000 17217000 24502000 0 5144100 0 7777300 1271600 10669 1152;1259;1264;1085 9129 65056;65057;65058;65059;65060;65061;65062;65063;65064 41513;41514;41515;41516;41517 41514 436 5 YNVHGCIGTPDSIVEK Unmodified 1787.8512 0.85123386 1193 Karp_00798 yes yes 0 0 0 0 By matching By MS/MS By MS/MS 1 1 1 42.824 43.257 3 0.023953 13807 20181213_JW_Orientia_Karp_3_1 58.814 24.202 34096000 0 0 1744700 9256700 0 0 23095000 0 10670 1193 9130 65065;65066;65067 41518;41519 41519 2 YNVLGAETVLNQMR Oxidation (M) 1622.8086 0.80864076 994 H3BQZ7;Q1KMD3 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 0 0 1 0 By MS/MS By matching By matching 1 1 1 54.728 55.265 2 0.0039842 22254 20181213_JW_Orientia_Karp_1_2 110.64 81.103 10683000 0 9401700 0 0 0 0 803340 478040 10671 994 9131 65068;65069;65070 41520 41520 547 1 YNVPIQPGIAILK Unmodified 1424.8391 0.83913625 1121 Karp_00319 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 64.601 64.768 2 0.00073445 25490 20181213_JW_Orientia_Karp_2_3 147.4 74.172 481930000 187790000 114200000 93509000 12395000 31754000 42282000 0 0 10672 1121 9132 65071;65072;65073;65074;65075;65076 41521;41522;41523;41524;41525;41526 41526 6 YNVSADSIEDKPLAATGLDNDIYR Unmodified 2639.2715 0.27149 1396 Karp_02152 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 58.249 58.542 3 3.7968E-07 24086 20181213_JW_Orientia_Karp_1_3 186.88 152.19 457530000 155710000 85320000 118260000 17376000 41074000 39685000 102220 0 10673 1396 9133 65077;65078;65079;65080;65081;65082;65083 41527;41528;41529;41530;41531 41529 5 YNVSADSIEDKPLAATGLDNDIYR Deamidation (NQ) 2640.2555 0.25550558 1396 Karp_02152 yes yes 0 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 59.517 59.804 3 2.0271E-14 24869 20181213_JW_Orientia_Karp_1_3 175.74 148.57 129350000 26514000 30923000 45726000 9317700 9765700 6545100 0 562140 10674 1396 9133 65084;65085;65086;65087;65088;65089;65090 41532;41533;41534 41534 905 3 YNWGGINLEDIK Unmodified 1420.6987 0.69867961 1336 Karp_01409 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 63.634 63.86 2 2.0537E-05 24170 20181213_JW_Orientia_Karp_3_2 174.77 90.985 80817000 29169000 0 30266000 1813400 8761300 6427400 224170 4156300 10675 1336 9134 65091;65092;65093;65094;65095;65096;65097;65098 41535;41536;41537;41538;41539 41539 5 YPALTKPENQDIDWTLLEGETR Unmodified 2588.2758 0.27584709 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;B4DG31;H7C4N2 PLS3 Plastin-3 yes no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 63.045 63.338 3 7.2154E-18 27608 20181213_JW_Orientia_Karp_1_1 190.79 159.73 228740000 90134000 47874000 76689000 0 0 5516300 160500 8366000 10676 623 9135 65099;65100;65101;65102;65103;65104 41540;41541;41542;41543;41544;41545 41540 6 YPEAPPFVR Unmodified 1074.5498 0.54983053 952 G3V2F7;Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-6 UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 50.452 50.635 2 0.0045495 19175 20181213_JW_Orientia_Karp_1_2 106.36 35.014 50251000 21320000 17517000 11413000 0 0 0 0 0 10677 952 9136 65105;65106;65107;65108 41546;41547;41548;41549 41547 4 YPEGSSEER Unmodified 1052.4411 0.44106794 582 B4DIT7;V9HWG3;P21980;B4DTN7;P21980-2;B4DU73;B4YUQ3;B4YUQ2;B4YUQ1;B2R7D1;P49221 HEL-S-45;TGM2;TGM4 Protein-glutamine gamma-glutamyltransferase 2;Protein-glutamine gamma-glutamyltransferase 4 yes no 0 0 0 0 By MS/MS 1 20.607 20.607 2 0.013408 4292 20181213_JW_Orientia_Karp_1_1 88.177 38.818 2072600 2072600 0 0 0 0 0 0 0 10678 582 9137 65109 41550 41550 1 YPFIVTSDDGR Unmodified 1268.6037 0.60371659 487 Q6NZX3;Q53Z63;B2RBH2;P21589-2;P21589;H0Y7R7 NT5E 5'-nucleotidase yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 53.776 54.092 2 0.00068325 21275 20181213_JW_Orientia_Karp_1_3 133.99 94.371 132850000 64813000 30880000 22223000 3022700 4163000 7195800 0 554490 10679 487 9138 65110;65111;65112;65113;65114;65115;65116 41551;41552;41553;41554;41555 41553 5 YPGGDWKPAEDTYTDANGDK Deamidation (NQ) 2199.9233 0.92327241 1991 Q9NZM1-6;Q9NZM1;Q9NZM1-3;Q9NZM1-2;H0YD14;Q9NZM1-5 MYOF Myoferlin yes no 0 1 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 45.691 45.992 3 3.6807E-07 16146 20181213_JW_Orientia_Karp_1_2 154.48 129.14 35228000 10831000 11814000 9645100 1174700 0 0 0 1763700 10680 1991 9139 65117;65118;65119;65120;65121 41556;41557 41557 1229 2 YPIEHGIITNWDDMEK Oxidation (M) 1975.8986 0.89857798 351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;B4DUI8 ACTA1;ACTC1;ACTA2;ACTG2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 2 2 3 49.288 49.691 2;3 0.00011421 16480 20181213_JW_Orientia_Karp_3_2 146.67 107.28 14447000000 2648400000 4104300000 2903200000 1402000000 767920000 1451200000 294900 1169700000 10681 351 9140 65122;65123;65124;65125;65126;65127;65128;65129;65130;65131;65132;65133;65134 41558;41559;41560;41561;41562;41563;41564;41565 41565 243 8 YPIEHGIITNWDDMEK Oxidation (M);Deamidation (NQ) 1976.8826 0.88259357 351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;B4DUI8 ACTA1;ACTC1;ACTA2;ACTG2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 0 1 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 51.844 52.084 3 0.0065303 20394 20181213_JW_Orientia_Karp_1_1 91.845 67.131 377470000 131830000 25148000 112860000 51558000 43870000 12209000 0 0 10682 351 9140 65135;65136;65137;65138;65139;65140;65141;65142;65143;65144 41566;41567;41568;41569;41570;41571 41566 140 243 6 YPIEHGIITNWDDMEK Unmodified 1959.9037 0.90366336 351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;B4DUI8 ACTA1;ACTC1;ACTA2;ACTG2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 53.81 54.168 3 1.5494E-05 19971 20181213_JW_Orientia_Karp_2_3 151.22 124.2 6081500000 2707400000 853870000 1553800000 323790000 314030000 274440000 8652100 45464000 10683 351 9140 65145;65146;65147;65148;65149;65150;65151;65152 41572;41573;41574;41575;41576;41577 41577 6 YPIEHGIITNWDDMEK Deamidation (NQ) 1960.8877 0.88767894 351 B7Z6P1;A8K3K1;P68133;P68032;Q5T8M8;A6NL76;D2JYH4;P63267;P62736;Q7Z7J6;B3KW67;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;B4DUI8 ACTA1;ACTC1;ACTA2;ACTG2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 0 1 0 0 By MS/MS By MS/MS By matching 1 1 1 56.156 56.522 3 0.0090573 22723 20181213_JW_Orientia_Karp_1_3 98.421 68.509 30163000 0 14736000 12222000 3205500 0 0 0 0 10684 351 9140 65153;65154;65155 41578;41579 41579 140 2 YPIEHGIVTNWDDMEK Oxidation (M) 1961.8829 0.88292792 1717;1743 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;G5E9R0;E7EVS6;C9JZR7;C9JUM1;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282 PS1TP5BP1;ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 49.095 49.337 3 0.022764 16192 20181213_JW_Orientia_Karp_3_2 77.24 40.895 51933000 12415000 0 23465000 0 2503200 5864400 0 7685700 10685 1717;1743 9141 65156;65157;65158;65159;65160 41580 41580 1343 1 YPLFEGQETGK Unmodified 1267.6085 0.60846762 1667 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.723 46.065 2 0.0032301 16284 20181213_JW_Orientia_Karp_1_2 112.71 41.488 64504000 19921000 16465000 19279000 0 0 0 1011000 7829200 10686 1667 9142 65161;65162;65163;65164;65165 41581;41582 41581 2 YPLFEGQETGKK Unmodified 1395.7034 0.70343063 1667 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 36.421 36.704 3 0.0017878 10746 20181213_JW_Orientia_Karp_3_1 113.07 57.025 101790000 34788000 26243000 28842000 0 3773400 1638000 6501900 0 10687 1667 9143 65166;65167;65168;65169;65170;65171 41583 41583 1 YPLFMVNPIVK Oxidation (M) 1335.7261 0.72608033 1113 Karp_00296 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 63.507 63.766 2 0.00078397 24948 20181213_JW_Orientia_Karp_2_3 130.22 83.034 156970000 40907000 0 56856000 6129200 22054000 20840000 443360 9741600 10688 1113 9144 65172;65173;65174;65175;65176;65177;65178;65179 41584;41585;41586;41587;41588;41589;41590 41589 633 7 YPLFMVNPIVK Unmodified 1319.7312 0.73116571 1113 Karp_00296 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 68.943 69.134 2 0.00015922 31114 20181213_JW_Orientia_Karp_1_2 175.38 123.12 139510000 56333000 20133000 0 7081100 18449000 8625200 18531000 10362000 10689 1113 9144 65180;65181;65182;65183;65184;65185;65186;65187;65188 41591;41592;41593;41594;41595;41596;41597;41598;41599;41600 41593 10 YPLLSGSIINVR Unmodified 1330.7609 0.76088593 1452 Karp_02533 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 63.013 63.308 2 1.3128E-16 27754 20181213_JW_Orientia_Karp_1_1 217.66 137.95 333990000 77059000 82711000 80111000 10785000 36759000 27727000 392520 18449000 10690 1452 9145 65189;65190;65191;65192;65193;65194;65195;65196 41601;41602;41603;41604;41605;41606 41601 6 YPLLSGSIINVRPVGGLTMIDESGQDEK Oxidation (M) 3003.5223 0.52230173 1452 Karp_02533 yes yes 0 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 67.655 67.856 3 1.7645E-08 23899 20181213_JW_Orientia_Karp_3_1 133.17 102.29 378060000 93348000 92606000 50524000 0 42244000 20648000 45015000 33678000 10691 1452 9146 65197;65198;65199;65200;65201;65202;65203 41607;41608;41609;41610;41611;41612;41613;41614;41615 41614 1061 9 YPLLSGSIINVRPVGGLTMIDESGQDEK Unmodified 2987.5274 0.52738711 1452 Karp_02533 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 71.198 71.299 3 1.758E-05 32647 20181213_JW_Orientia_Karp_1_1 112.61 81.253 169240000 86679000 0 0 9372800 12453000 15146000 31999000 13594000 10692 1452 9146 65204;65205;65206;65207;65208;65209 41616;41617;41618;41619;41620 41616 5 YPLLSGSIINVRPVGGLTMIDESGQDEK Deamidation (NQ) 2988.5114 0.51140269 1452 Karp_02533 yes yes 0 1 0 1 By MS/MS By MS/MS 1 1 71.207 71.33 3 0.0021875 32488 20181213_JW_Orientia_Karp_1_2 111.24 84.742 79058000 0 52781000 26277000 0 0 0 0 0 10693 1452 9146 65210;65211 41621;41622 41621 982 0 YPMAVGLNK Oxidation (M) 1007.511 0.51100218 2013 Q9Y3U8;J3KTD3;J3QSB5 RPL36 60S ribosomal protein L36 yes no 0 0 1 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 37.258 37.545 2 0.035659 12032 20181213_JW_Orientia_Karp_1_1 71.342 15.793 77954000 51603000 20828000 0 3347200 2175300 0 0 0 10694 2013 9147 65212;65213;65214;65215 41623;41624 41623 2 YPMAVGLNK Unmodified 991.51609 0.51608756 2013 Q9Y3U8;J3KTD3;J3QSB5 RPL36 60S ribosomal protein L36 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 43.792 44.092 2 0.0024159 14983 20181213_JW_Orientia_Karp_1_3 116.54 27.173 71182000 24601000 14392000 21291000 7438500 799100 0 2660000 0 10695 2013 9147 65216;65217;65218;65219;65220;65221 41625;41626;41627;41628 41627 4 YPMEHGIVK Oxidation (M) 1088.5325 0.5324659 601 R4GMT0;B4DM97;P61163;B4DXP9 ACTR1A Alpha-centractin yes no 0 0 1 0 By MS/MS By matching By MS/MS 1 1 1 25.792 26.092 3 0.008194 6702 20181213_JW_Orientia_Karp_1_1 93.143 21.693 14580000 2647100 9405200 0 0 0 0 2528000 0 10696 601 9148 65222;65223;65224 41629;41630 41629 372 2 YPSLELER Unmodified 1005.5131 0.51311067 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;B0QZK4;Q5SWC8;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS 1 47.667 47.667 2 0.023609 17613 20181213_JW_Orientia_Karp_1_1 105.14 33.793 0 0 0 0 0 0 0 0 0 10697 1846 9149 65225 41631 41631 1 YPYTPLK Unmodified 880.46945 0.46945494 1424 Karp_02310 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 40.555 40.845 2 0.015766 13364 20181213_JW_Orientia_Karp_1_2 110.34 12.307 327600000 107720000 74806000 99062000 0 0 1180000 44829000 0 10698 1424 9150 65226;65227;65228;65229;65230 41632;41633;41634 41633 3 YPYWPHQPIENL Unmodified 1555.746 0.74596415 1526 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 61.054 61.325 2 2.7247E-07 26561 20181213_JW_Orientia_Karp_1_1 183.72 131 272390000 88799000 90287000 51440000 0 29552000 0 12312000 0 10699 1526 9151 65231;65232;65233;65234;65235;65236 41635;41636;41637;41638;41639;41640 41635 6 YQASHPNLR Unmodified 1084.5414 0.5413911 1533 O95721;C9JAF7 SNAP29 Synaptosomal-associated protein 29;Synaptosomal-associated protein yes no 0 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 22.32 22.629 3 0.04282 4552 20181213_JW_Orientia_Karp_3_1 51.528 17.322 16462000 0 1978000 3103700 6202600 2316500 1047200 1813800 0 10700 1533 9152 65237;65238;65239;65240;65241;65242 41641 41641 1 YQASTSNTVSK Unmodified 1184.5673 0.56733108 345 A8K2W3;O95810 SDPR Serum deprivation-response protein yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 21.648 21.993 2 3.095E-05 4756 20181213_JW_Orientia_Karp_1_1 164.66 93.321 66793000 13639000 19600000 10600000 5450000 2161500 4834100 6697800 3810500 10701 345 9153 65243;65244;65245;65246;65247;65248;65249;65250 41642;41643;41644;41645;41646;41647;41648;41649 41642 8 YQAVTATLEEK Unmodified 1251.6347 0.63468237 1666 Q5QTS3;Q53H34;P40429;Q8J015;Q9BSQ6;M0QYS1;Q6NVV1 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 40.179 40.489 2 9.9675E-05 13155 20181213_JW_Orientia_Karp_1_2 160.91 70.312 69686000 20368000 17084000 22685000 0 818380 0 7743600 986180 10702 1666 9154 65251;65252;65253;65254;65255;65256 41650;41651;41652;41653 41651 4 YQCACNPGYHSTPDR Unmodified 1824.7308 0.73080115 1654 P35555;Q75N88;Q9NP01 FBN1 Fibrillin-1 yes no 0 0 0 0 By MS/MS 1 26.586 26.837 3 0.0085028 6084 20181213_JW_Orientia_Karp_2_3 99.834 80.548 0 0 0 0 0 0 0 0 0 10703 1654 9155 65257 41654 41654 1 YQCLVISPSDGHILSR Unmodified 1843.9251 0.9250675 1300 Karp_01233 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 51.959 52.219 3 0.019788 20758 20181213_JW_Orientia_Karp_1_1 82.529 34.998 33972000 12630000 8797200 0 4802200 2480900 5261900 0 0 10704 1300 9156 65258;65259;65260;65261;65262 41655;41656 41655 2 YQCYCYGR Unmodified 1168.443 0.44299897 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 31.089 31.462 2 0.0047324 8965 20181213_JW_Orientia_Karp_1_1 126.67 107.31 96209000 38474000 21272000 21000000 3040500 0 1295600 8201100 2925300 10705 85 9157 65263;65264;65265;65266;65267;65268;65269 41657;41658;41659;41660;41661;41662 41657 6 YQDQEAEQYVGGR Unmodified 1541.6746 0.6746497 1154 Karp_00560 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS 1 2 1 37.443 37.868 2 6.6483E-15 11592 20181213_JW_Orientia_Karp_1_3 220.29 172.33 6910500 0 0 2790600 0 0 0 4119900 0 10706 1154 9158 65270;65271;65272;65273 41663;41664;41665 41664 3 YQEAEPGPLGSAVGSQR Unmodified 1744.838 0.83802663 752 Q8NAH4;C9JJX6;E9PDC3;B9EH95;O00192-2;O00192 ARVCF Armadillo repeat protein deleted in velo-cardio-facial syndrome yes no 0 0 0 0 By MS/MS By MS/MS 1 1 44.514 44.689 2 0.0059952 15528 20181213_JW_Orientia_Karp_1_2 123.95 75.205 0 0 0 0 0 0 0 0 0 10707 752 9159 65274;65275 41666;41667 41667 2 YQEAIENFNLAIK Unmodified 1551.7933 0.79330827 1186 Karp_02088;Karp_00690 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 59.81 60.06 2 1.1697E-07 25369 20181213_JW_Orientia_Karp_1_2 216.84 161.76 57100000 13191000 11116000 9656300 4632300 8759400 9745200 0 0 10708 1186 9160 65276;65277;65278;65279;65280;65281 41668;41669;41670 41669 3 YQEEFEHFQQELDK Unmodified 1868.8217 0.82170787 67 Q53FS4;B2R774;A0A024R2A7;P49257;A0PJ85 LMAN1 Protein ERGIC-53 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.203 48.505 3 0.0029297 17503 20181213_JW_Orientia_Karp_1_3 101.45 73.873 147060000 37254000 58061000 26111000 9800900 3386800 5057400 0 7390600 10709 67 9161 65282;65283;65284;65285;65286;65287;65288 41671;41672;41673;41674;41675;41676;41677 41673 7 YQELQITAGR Deamidation (NQ) 1178.5932 0.5931519 819 Q0IIN1;CON__Q7Z794;Q7Z794;Q147W7 KRT77;KRT1B Keratin, type II cytoskeletal 1b yes no 0 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 44.321 44.616 2 2.664E-08 14614 20181213_JW_Orientia_Karp_2_1 188.99 19.052 3424300000 686130000 745310000 527340000 689520000 331820000 359990000 0 84215000 + 10710 819 9162 65289;65290;65291;65292;65293;65294;65295;65296 41678;41679;41680;41681;41682;41683;41684;41685 41681 1663 6 YQEVTNNLEFAK Unmodified 1454.7042 0.70415892 901 E9PLA9;Q14444-2;Q14444;E9PP31;B4DSF8;G3V153;B3KXU8 CAPRIN1 Caprin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 46.748 47.124 2 0.00027402 15877 20181213_JW_Orientia_Karp_2_1 164.48 90.5 28265000 0 0 0 8511700 7681400 9542100 2529700 0 10711 901 9163 65297;65298;65299;65300 41686;41687;41688;41689 41686 4 YQGTILSIDDNLQR Unmodified 1634.8264 0.82639932 1762 Q02413 DSG1 Desmoglein-1 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 57.318 57.694 2 0.00028081 20204 20181213_JW_Orientia_Karp_3_1 152.38 105.15 12355000 0 4432200 0 0 4044100 3237900 641080 0 10712 1762 9164 65301;65302;65303;65304 41690;41691 41691 2 YQGVNLYVK Unmodified 1082.576 0.57604528 179 A0A024R9E2;E7EQV3;B4DZW4;B3KT93;A0A024R9C1;P11940-2;P11940;E7ERJ7;B4DQX0;H0YAR2;Q4VXU2;H0YAP2;Q4VY17 PABPC1;PABPC1L Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 44.688 44.981 2 0.0039932 15524 20181213_JW_Orientia_Karp_1_3 109.01 67.36 82802000 18587000 25132000 20248000 6246000 4569700 5557000 2462800 0 10713 179 9165 65305;65306;65307;65308;65309;65310;65311 41692;41693 41692 2 YQHLHNQFAITPLFK Unmodified 1855.9733 0.97333832 1149 Karp_00508 yes yes 0 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 49.043 49.293 3 0.037056 17006 20181213_JW_Orientia_Karp_2_2 47.037 24.562 26354000 3661600 10086000 3541600 4442200 2371400 2251500 0 0 10714 1149 9166 65312;65313;65314;65315;65316;65317 41694 41694 1 YQHLMTINANNR Oxidation (M);2 Deamidation (NQ) 1491.6776 0.67762659 1975 Q9H4L7-3;Q9H4L7;Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 yes no 0 2 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 30.256 30.666 2 0.00061503 8274 20181213_JW_Orientia_Karp_1_2 164.46 90.29 28167000 9272300 0 5841900 4640800 2282100 0 2834000 3295500 10715 1975 9167 65318;65319;65320;65321;65322;65323;65324;65325;65326 41695;41696;41697;41698;41699;41700;41701;41702 41697 1220;1221 1523 8 YQIDPDACFSAK Unmodified 1413.6235 0.62346575 1616 P21796;B3KTS5;B4DEI3 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 49.573 49.823 2 0.0019501 18572 20181213_JW_Orientia_Karp_1_2 122.34 24.779 126420000 30743000 40745000 45416000 6159100 3357800 0 0 0 10716 1616 9168 65327;65328;65329;65330;65331 41703;41704;41705 41704 3 YQIGEEVR Unmodified 992.49271 0.49270958 1175 Karp_00629 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.491 36.824 2 0.0091104 11758 20181213_JW_Orientia_Karp_1_1 106.68 54.995 479930000 138620000 120790000 126780000 20980000 32611000 0 40153000 0 10717 1175 9169 65332;65333;65334;65335;65336;65337 41706;41707;41708;41709;41710;41711 41706 6 YQKSTELLIR Unmodified 1249.703 0.7030367 1749;1853 P68431;Q71DI3;Q16695;Q5TEC6 HIST1H3A;HIST2H3A;HIST3H3;HIST2H3PS2 Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 35.135 35.478 3 3.7269E-06 10441 20181213_JW_Orientia_Karp_1_3 175.65 111.83 305990000 93774000 116140000 66709000 0 1905000 0 8414200 19047000 10718 1749;1853 9170 65338;65339;65340;65341;65342;65343;65344 41712;41713;41714;41715;41716;41717 41714 6 YQLDPTASISAK Unmodified 1292.6612 0.66123147 21 A0A024QZT0;A0A024QZN9;P45880-2;P45880;P45880-1;B4DKM5 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 48.199 48.544 2 0.0012287 18141 20181213_JW_Orientia_Karp_1_1 131.17 63.275 426700000 139630000 109130000 89293000 38329000 10690000 19251000 519780 19848000 10719 21 9171 65345;65346;65347;65348;65349;65350;65351;65352 41718;41719;41720;41721;41722 41718 5 YQNPDVLQEK Unmodified 1232.6037 0.60371659 1289 Karp_01161 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 38.043 38.342 2 0.0064725 11897 20181213_JW_Orientia_Karp_1_3 123.75 54.15 35349000 14012000 17652000 0 3684700 0 0 0 0 10720 1289 9172 65353;65354;65355;65356 41723;41724 41724 2 YQPMITEIYEELK Unmodified 1655.8117 0.81166045 1216 Karp_00883 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 69.101 69.279 2 0.0023841 27298 20181213_JW_Orientia_Karp_3_2 122.33 75.62 59230000 27404000 0 0 0 10674000 0 17209000 3942400 10721 1216 9173 65357;65358;65359;65360 41725;41726;41727 41727 3 YQQGDFGYCPR Unmodified 1389.5772 0.57718426 1486 N0E466;N0E4C7;Q5SRQ3;Q5SRQ6;N0E472;P67870 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991 Casein kinase II subunit beta yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.787 41.087 2 0.0050718 13305 20181213_JW_Orientia_Karp_1_3 112.36 93.751 32140000 10067000 5990400 8685800 967270 1431700 0 4997400 0 10722 1486 9174 65361;65362;65363;65364;65365;65366 41728 41728 1 YQSISSATPNQIMLASK Oxidation (M) 1853.9193 0.91931342 1093 Karp_00242 yes yes 0 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.374 48.668 2 1.1157E-11 18214 20181213_JW_Orientia_Karp_1_1 183.28 136.9 220250000 70144000 0 62407000 24795000 26467000 16523000 0 19918000 10723 1093 9175 65367;65368;65369;65370;65371;65372 41729;41730;41731;41732;41733 41729 604 5 YQSISSATPNQIMLASK Unmodified 1837.9244 0.9243988 1093 Karp_00242 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 52.811 53.113 2 3.6187E-164 20876 20181213_JW_Orientia_Karp_1_2 353.65 239.98 374170000 81063000 138510000 104550000 15952000 21994000 11700000 0 396400 10724 1093 9175 65373;65374;65375;65376;65377;65378;65379;65380 41734;41735;41736;41737;41738;41739;41740 41735 7 YQSISSATPNQIMLASK Oxidation (M);Deamidation (NQ) 1854.9033 0.90332901 1093 Karp_00242 yes yes 0 1 1 0 By matching By MS/MS By matching 1 1 1 49.974 50.294 2 0.0005639 18774 20181213_JW_Orientia_Karp_1_2 130.66 87.053 24441000 6270700 14984000 0 0 0 0 0 3186000 10725 1093 9175 65381;65382;65383 41741 41741 444 604 1 YQVGTVIR Unmodified 934.52362 0.52361577 1095 Karp_00244 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.406 39.756 2 0.001494 12607 20181213_JW_Orientia_Karp_1_3 170.3 6.9555 317720000 107250000 73298000 110740000 10655000 0 0 15775000 0 10726 1095 9176 65384;65385;65386;65387;65388;65389 41742;41743;41744;41745 41742 4 YRHQFVGQK Unmodified 1161.6043 0.60432571 1421 Karp_02305 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 15.998 16.247 3 0.0029648 2737 20181213_JW_Orientia_Karp_2_1 101.64 59.305 20983000 8092000 2914300 5544200 2296900 0 1149600 986320 0 10727 1421 9177 65390;65391;65392;65393;65394;65395 41746;41747;41748;41749;41750;41751 41749 6 YRPNYAEAYHNK Unmodified 1524.711 0.71097563 1323;1447 Karp_01308;Karp_02466 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 23.732 24.087 3;4 0.00024134 5401 20181213_JW_Orientia_Karp_1_2 153.54 110.75 93327000 0 38239000 12173000 11787000 8907700 6138300 12536000 3544900 10728 1323;1447 9178 65396;65397;65398;65399;65400;65401;65402;65403;65404;65405;65406;65407;65408 41752;41753;41754;41755;41756;41757;41758;41759;41760;41761 41752 7 YRPNYSEAYHNK Unmodified 1540.7059 0.70589025 1152;1259;1145 Karp_00478;Karp_00856;Karp_01552;Karp_00538;Karp_00993 no no 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 2 2 2 2 2 22.87 23.208 3;4 0.00017783 4804 20181213_JW_Orientia_Karp_3_1 171.67 129.84 100710000 15663000 31287000 12731000 10014000 11017000 7398800 6761300 5841400 10729 1145;1152;1259 9179 65409;65410;65411;65412;65413;65414;65415;65416;65417;65418;65419;65420;65421;65422;65423 41762;41763;41764;41765;41766;41767 41767 6 YSAIIQLIQECYSK Unmodified 1714.86 0.86000763 1374 Karp_02110 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 68.203 68.43 2 0.0035265 24169 20181213_JW_Orientia_Karp_3_1 122.64 84.618 19251000 10048000 4653300 0 2556600 0 0 0 1993900 10730 1374 9180 65424;65425;65426;65427;65428 41768;41769 41769 2 YSDFEWLR Unmodified 1114.5084 0.50835964 1514 O60493;O60493-4;O60493-3 SNX3 Sorting nexin-3 yes no 0 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 59.584 59.794 2 0.0052228 25194 20181213_JW_Orientia_Karp_1_2 119.27 74.664 36854000 19441000 4529800 3892900 0 4961500 4028300 0 0 10731 1514 9181 65429;65430;65431;65432;65433 41770 41770 1 YSDIDIILLK Unmodified 1191.6751 0.67509062 202 A0A024RAM0;Q92973-3;Q92973-2;Q92973 TNPO1 Transportin-1 yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 67.833 67.958 2 0.0118 30517 20181213_JW_Orientia_Karp_1_1 103.55 68.108 13118000 5715300 2125500 4776900 0 0 500650 0 0 10732 202 9182 65434;65435;65436;65437 41771 41771 1 YSDMIVAAIQAEK Oxidation (M) 1453.7123 0.71228076 1565 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 51.113 51.458 2 6.5627E-18 17591 20181213_JW_Orientia_Karp_3_1 223.77 115.34 652190000 211830000 161590000 183470000 20434000 17177000 18942000 24663000 14090000 10733 1565 9183 65438;65439;65440;65441;65442;65443;65444;65445 41772;41773;41774;41775;41776;41777;41778;41779;41780 41779 1182 9 YSDMIVAAIQAEK Unmodified 1437.7174 0.71736614 1565 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 58.476 58.769 2 2.3477E-26 24206 20181213_JW_Orientia_Karp_1_3 240.8 174.5 822990000 328290000 200680000 253020000 12368000 13250000 13604000 1783700 0 10734 1565 9183 65446;65447;65448;65449;65450;65451;65452;65453 41781;41782;41783;41784;41785;41786;41787;41788;41789 41785 9 YSFCTDHTVLVQTR Unmodified 1725.8145 0.81445442 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZM7;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686O12165;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 45.709 45.958 3 0.0045401 16168 20181213_JW_Orientia_Karp_1_2 94.547 69.227 172360000 60092000 59967000 40664000 5444100 0 6195700 0 0 10735 85 9184 65454;65455;65456;65457;65458;65459 41790;41791;41792;41793;41794 41791 5 YSFLQFDPAPR Unmodified 1339.6561 0.65608651 513 H0YBN9;B3KQ51;Q8WZ56;Q6I9T8;Q5U0I7;B3KUN1;B3KRM2;P67775-2;P67775;P62714 PPP2CB;PPP2CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 63.921 64.086 2 0.0036748 28273 20181213_JW_Orientia_Karp_1_1 110.86 74.913 25630000 13070000 0 6675400 0 0 4514800 0 1370500 10736 513 9185 65460;65461;65462;65463 41795 41795 1 YSGAYGASVSDEELK Unmodified 1574.71 0.71003215 299 B7Z1X9;A4D1N4;C9JRZ6;F8WAR4;Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 42.543 42.843 2 2.2053E-13 14268 20181213_JW_Orientia_Karp_1_3 205.31 149.5 37887000 9137200 12134000 11467000 0 0 0 5149500 0 10737 299 9186 65464;65465;65466;65467 41796;41797 41796 2 YSHAQVNASFNEFLR Unmodified 1781.8485 0.84853174 1162 Karp_00605 yes yes 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 49.141 49.493 3 0.01048 18446 20181213_JW_Orientia_Karp_1_2 78.326 49.313 69761000 0 17882000 12345000 15777000 10007000 8078700 0 5672500 10738 1162 9187 65468;65469;65470;65471;65472;65473 41798;41799 41798 2 YSHTSYYPEAIYR Unmodified 1648.7522 0.75217174 1273 Karp_01100 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 40.911 41.211 2;3 0.010228 13342 20181213_JW_Orientia_Karp_1_3 117.95 85.51 900710000 261040000 289080000 164100000 31729000 60034000 0 94731000 0 10739 1273 9188 65474;65475;65476;65477;65478;65479;65480;65481;65482;65483;65484;65485 41800;41801;41802;41803;41804;41805;41806;41807 41802 8 YSIAITWGGHHIPK Unmodified 1578.8307 0.83069683 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 45.519 45.702 3 0.034141 16500 20181213_JW_Orientia_Karp_1_1 62.088 30.026 42231000 10237000 12933000 19061000 0 0 0 0 0 10740 1520 9189 65486;65487;65488 41808 41808 1 YSILPLSDK Unmodified 1034.5648 0.56481189 1309 Karp_01250 yes yes 0 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 55.726 56.039 2 0.012602 22520 20181213_JW_Orientia_Karp_1_3 88.948 54.14 26122000 0 0 8834700 1719900 6207300 9360000 0 0 10741 1309 9190 65489;65490;65491;65492 41809 41809 1 YSINPLMASVSVR Oxidation (M) 1451.7442 0.74424959 1371 Karp_02001 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 1 1 2 2 2 55.852 56.193 2 1.128E-25 21085 20181213_JW_Orientia_Karp_2_3 239.48 178.65 3279900000 727900000 555130000 868870000 215780000 447280000 286420000 109770000 68760000 10742 1371 9191 65493;65494;65495;65496;65497;65498;65499;65500;65501;65502;65503;65504;65505;65506;65507;65508;65509 41810;41811;41812;41813;41814;41815;41816;41817;41818;41819;41820;41821 41818 958 12 YSINPLMASVSVR Unmodified 1435.7493 0.74933497 1371 Karp_02001 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1 1 1 1 61.277 61.59 2;3 6.683E-44 26725 20181213_JW_Orientia_Karp_1_1 277.15 171.17 1827000000 3134900 539100000 638350000 123110000 203000000 186900000 34635000 98774000 10743 1371 9191 65510;65511;65512;65513;65514;65515;65516;65517;65518;65519;65520 41822;41823;41824;41825;41826;41827;41828;41829;41830;41831;41832 41822 10 YSIPFNLPIFEGK Unmodified 1523.8024 0.8024164 1194 Karp_00806 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 74.419 74.451 2 0.0011371 30352 20181213_JW_Orientia_Karp_2_1 145.28 107.93 132210000 34511000 45045000 33740000 2214000 5132600 5384100 2214800 3966000 10744 1194 9192 65521;65522;65523;65524;65525;65526;65527;65528 41833;41834;41835;41836;41837;41838;41839 41836 7 YSLDPENPTK Unmodified 1162.5506 0.55061839 66 J3QS96;J3QQT2;J3KRX5;A0A024R261;P18621;P18621-3;J3KRB3;J3KSJ0 RPL17;hCG_24487 60S ribosomal protein L17 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 41.484 41.754 2 0.00093769 14260 20181213_JW_Orientia_Karp_1_1 125.57 72.632 124460000 38220000 35098000 32201000 0 2856500 0 16087000 0 10745 66 9193 65529;65530;65531;65532;65533 41840;41841;41842;41843;41844 41840 5 YSLEPVAVELK Unmodified 1246.6809 0.68090428 1539 V9HWF4;P00558-2;P00558 HEL-S-68p;PGK1 Phosphoglycerate kinase;Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 57.558 57.924 2 3.1005E-07 21812 20181213_JW_Orientia_Karp_2_2 187.5 132.39 104440000 33970000 22873000 0 12985000 14407000 14745000 57397 5405900 10746 1539 9194 65534;65535;65536;65537;65538;65539;65540;65541 41845;41846;41847;41848;41849;41850 41849 6 YSLFDSTK Unmodified 959.46001 0.46001246 1257 Karp_00937 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 47.055 47.327 2 0.0063515 16031 20181213_JW_Orientia_Karp_2_1 115.49 71.377 180450000 63365000 56347000 31000000 11293000 2670900 11569000 0 4209400 10747 1257 9195 65542;65543;65544;65545;65546;65547;65548 41851;41852;41853;41854;41855;41856 41854 6 YSLILVTDPR Unmodified 1175.655 0.65502388 1393 Karp_02145 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 1 1 1 59.32 59.633 2 6.1148E-06 25546 20181213_JW_Orientia_Karp_1_1 169.09 92.609 398050000 222600000 37999000 43270000 11494000 36958000 45595000 135420 0 10748 1393 9196 65549;65550;65551;65552;65553;65554;65555;65556;65557 41857;41858;41859;41860;41861;41862;41863 41857 7 YSPWGEGDNYIK Unmodified 1427.6357 0.635745 1288 Karp_01160 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 51.076 51.449 2 0.00096491 18248 20181213_JW_Orientia_Karp_2_1 134.57 78.018 213590000 95867000 34765000 47571000 14984000 0 10801000 7793900 1805200 10749 1288 9197 65558;65559;65560;65561;65562;65563;65564 41864;41865;41866;41867;41868 41867 5 YSQDLIK Unmodified 865.45453 0.45453316 1312 Karp_01264 yes yes 0 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 35.621 35.984 2 0.029807 10445 20181213_JW_Orientia_Karp_3_1 89.752 15.314 45000000 0 15985000 16714000 0 5818400 0 6482900 0 10750 1312 9198 65565;65566;65567;65568 41869 41869 1 YSQLVVETIR Unmodified 1206.6608 0.66083754 1926 Q92522 H1FX Histone H1x yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 48.954 49.255 2 3.6175E-12 16133 20181213_JW_Orientia_Karp_3_2 215.72 142.47 830320000 220220000 215450000 135280000 76815000 28244000 41475000 0 112840000 10751 1926 9199 65569;65570;65571;65572;65573;65574;65575 41870;41871;41872;41873;41874;41875;41876;41877 41876 8 YSTAALSVQLSQQQSFAAK Unmodified 2027.0324 0.032369346 1316 Karp_01272 yes yes 0 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 54.892 55.166 2 3.5346E-69 21840 20181213_JW_Orientia_Karp_1_3 284.51 250.01 44878000 13004000 13818000 16063000 1992900 0 0 0 0 10752 1316 9200 65576;65577;65578;65579 41878;41879 41879 2 YSTIAGIPIMELVK Oxidation (M) 1549.8426 0.84256665 1110 Karp_00292 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 67.492 67.693 2 0.0042859 26574 20181213_JW_Orientia_Karp_2_2 109.16 37.935 99529000 21093000 12619000 18060000 0 16007000 6098000 14145000 11506000 10753 1110 9201 65580;65581;65582;65583;65584;65585;65586 41880;41881;41882;41883;41884 41883 631 5 YSTIAGIPIMELVK Unmodified 1533.8477 0.84765203 1110 Karp_00292 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 73.218 73.275 2 1.1856E-07 33497 20181213_JW_Orientia_Karp_1_3 185.99 147.19 391490000 157740000 71073000 55506000 4161600 20016000 20568000 46913000 15513000 10754 1110 9201 65587;65588;65589;65590;65591;65592;65593;65594 41885;41886;41887;41888;41889;41890;41891;41892;41893 41888 9 YSVDIPLDK Unmodified 1048.5441 0.54407645 57 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7EQQ9;K7ELC7 RPL27 60S ribosomal protein L27 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 52.375 52.676 2 0.0015887 20940 20181213_JW_Orientia_Karp_1_1 123.35 53.757 267580000 82900000 54618000 54351000 30102000 20195000 25354000 0 60585 10755 57 9202 65595;65596;65597;65598;65599;65600;65601 41894;41895;41896;41897;41898;41899 41894 6 YSVGIHNLLAYVK Unmodified 1475.8136 0.81364979 1578 P09914-2;P09914 IFIT1 Interferon-induced protein with tetratricopeptide repeats 1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 57.261 57.643 3 0.012226 23831 20181213_JW_Orientia_Karp_1_2 83.137 60.258 14457000 0 4981400 0 1302100 3035800 3437800 0 1699600 10756 1578 9203 65602;65603;65604;65605;65606;65607 41900;41901;41902 41900 3 YSVQLLTPANLLAK Unmodified 1529.8817 0.88172935 699 H7C4G5;B5BUB1;Q9Y265 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 68.951 69.127 2 0.025291 30759 20181213_JW_Orientia_Karp_1_3 81.709 42.926 16628000 4104600 4720400 2270400 311830 0 0 4020700 1200100 10757 699 9204 65608;65609;65610;65611;65612;65613 41903 41903 1 YTAQVDAEEK Unmodified 1152.5299 0.52988294 1526 O75947 ATP5H ATP synthase subunit d, mitochondrial yes yes 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 27.863 28.176 2 0.0001408 7162 20181213_JW_Orientia_Karp_1_2 147.3 105.88 25833000 9699900 10016000 0 0 0 1572100 4545500 0 10758 1526 9205 65614;65615;65616;65617 41904 41904 1 YTCHVQHEGLPK Unmodified 1467.6929 0.69288272 268;267;709;857;1906;2066;741;861;2063;858 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HLA-A;HLA;HLA-B;HLA-A*01;HLA-A24AK;HLA-ABC;HLA-B*27;HEL-S-83;MHC class I HLA-A;HLA-A*0226;HLA-A*02;HLA A;HLA-A*31;HLA-A*33;HLA-A*0201V3;HLA-DQB1 HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-23 alpha chain;HLA class I histocompatibility antigen, A-24 alpha chain;Beta-2-microglobulin;HLA class I histocompatibility antigen, B-27 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-29 alpha chain;HLA class I histocompatibility antigen, A-43 alpha chain;HLA class I histocompatibility antigen, A-26 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain no no 0 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 2 2 23.464 23.911 3;4 0.015018 4248 20181213_JW_Orientia_Karp_3_2 84.821 56.959 43834000 0 24516000 3967500 0 2651400 1294500 5147300 6257500 10759 268;741;858;2063;267;709;857;1906;2066;861 9206 65618;65619;65620;65621;65622;65623;65624;65625;65626 41905;41906;41907;41908 41908 4 YTDLSIQEVLNLK Unmodified 1534.8243 0.82427405 1356 Karp_01685 yes yes 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 70.111 70.264 2 3.4575E-07 28474 20181213_JW_Orientia_Karp_2_1 237.53 147.64 35558000 10504000 0 0 0 7063300 1861700 13067000 3061000 10760 1356 9207 65627;65628;65629;65630;65631;65632;65633 41909;41910;41911 41910 3 YTEFYHVPTHSDASK Unmodified 1780.8057 0.80566387 257;732 A0A024RDE8;Q96HC4;F5H7Y0;Q96HC4-7;Q96HC4-4;Q96HC4-6;Q4W5K9;Q96HC4-3;Q96HC4-2;H0YBI4;B7Z8X5;Q59FC9 PDLIM5;LIM PDZ and LIM domain protein 5 no no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 1 1 2 34.218 34.563 3;4 0.0085009 10128 20181213_JW_Orientia_Karp_1_2 82.578 60.764 73750000 9240300 19956000 22148000 4716300 1296700 2071400 14321000 0 10761 257;732 9208 65634;65635;65636;65637;65638;65639;65640;65641;65642;65643 41912;41913;41914;41915;41916 41912 5 YTEHSTVGLAQQWDQLDQLGMR Oxidation (M) 2591.2074 0.20744995 316 A6NG51;Q13813-3;Q13813;Q13813-2;A0A024R889;Q9UG16 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS 1 58.548 58.548 3 0.011863 24765 20181213_JW_Orientia_Karp_1_1 73.688 48.07 24577000 24577000 0 0 0 0 0 0 0 10762 316 9209 65644 41917 41917 219 1 YTFAPSVSLNK Unmodified 1225.6343 0.63428844 1984 Q9NR12;D6RH06;Q9NR12-5;Q9NR12-6;Q9NR12-4;D6RF83;H7BYK4;Q9NR12-3 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 51.56 51.82 2 0.012019 20392 20181213_JW_Orientia_Karp_1_1 92.538 46.38 97607000 27341000 28104000 26869000 0 4713400 9480900 0 1098600 10763 1984 9210 65645;65646;65647;65648;65649;65650 41918;41919 41918 2 YTGNTYR Unmodified 873.39808 0.39808091 85 A0A024R462;P02751-17;P02751-3;P02751;B7ZLE5;P02751-6;P02751-5;P02751-9;P02751-14;P02751-8;P02751-7;P02751-15;P02751-10;P02751-4;P02751-13;P02751-11;P02751-12;Q6MZF4;P02751-16;P02751-2 FN1;DKFZp686K139 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 yes no 0 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 19.189 19.453 2 0.011997 3581 20181213_JW_Orientia_Karp_3_1 124.59 61.88 66132000 25083000 18725000 8934100 1363400 250340 10577000 1199100 0 10764 85 9211 65651;65652;65653;65654;65655;65656;65657 41920;41921;41922;41923 41923 4 YTHLVDQDTTSFDSAWGQESAQNTK Unmodified 2828.2525 0.25254547 1709 P55081 MFAP1 Microfibrillar-associated protein 1 yes yes 0 0 0 0 By matching By MS/MS 1 1 50.574 50.925 3 0.00032503 18181 20181213_JW_Orientia_Karp_2_2 97.825 59.69 14459000 0 0 0 9075100 5383500 0 0 0 10765 1709 9212 65658;65659 41924 41924 1 YTIHSQLEHLQSK Unmodified 1582.8104 0.81035532 1966 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 yes yes 0 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 32.39 32.723 4 0.030047 9676 20181213_JW_Orientia_Karp_1_1 53.038 40.598 151120000 58144000 42070000 9512000 14166000 14613000 0 12613000 0 10766 1966 9213 65660;65661;65662;65663;65664;65665 41925;41926 41925 2 YTLFQIFSK Unmodified 1145.6121 0.61209643 1466;1549 L8E853;P04275 VWF von Willebrand factor;von Willebrand antigen 2 no no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 69.435 69.579 2 0.0015531 31433 20181213_JW_Orientia_Karp_1_2 123.86 80.094 46650000 7880300 7547700 14126000 0 2971300 953290 11337000 1834700 10767 1466;1549 9214 65666;65667;65668;65669;65670;65671;65672 41927;41928;41929;41930 41927 4 YTLNVLEDLGDGQK Unmodified 1563.7781 0.77805214 623 B4DPW9;Q53GY0;P13797-2;P13797;F8W8D8;P13797-3;Q96HI1;B4DG31;A7E2S2;B4DI60 PLS3 Plastin-3 yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 64.699 64.898 2 1.3165E-07 25700 20181213_JW_Orientia_Karp_2_1 184.96 131.95 26428000 19212000 5764200 0 1451900 0 0 0 0 10768 623 9215 65673;65674;65675;65676 41931;41932 41931 2 YTLPPGVDPTQVSSSLSPEGTLTVEAPMPK Oxidation (M) 3113.5478 0.54784778 1553 V9HW43;P04792;B4DL87 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 71.92 72.015 3 4.1936E-07 26290 20181213_JW_Orientia_Karp_3_1 111.5 82.683 3654800000 578780000 582240000 466000000 261280000 456530000 413030000 663170000 233780000 10769 1553 9216 65677;65678;65679;65680;65681;65682;65683;65684 41933;41934;41935;41936;41937;41938;41939;41940;41941 41939 1167 9 YTLPPGVDPTQVSSSLSPEGTLTVEAPMPK Unmodified 3097.5529 0.55293316 1553 V9HW43;P04792;B4DL87 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 3 72.66 72.742 3 1.0689E-15 29420 20181213_JW_Orientia_Karp_2_2 147.75 96.29 2267700000 572110000 293450000 439530000 0 213950000 152970000 333000000 262690000 10770 1553 9216 65685;65686;65687;65688;65689;65690;65691;65692;65693;65694 41942;41943;41944;41945;41946;41947;41948;41949;41950 41947 9 YTNVDGMPELK Oxidation (M) 1281.5911 0.59110299 1089 Karp_00229 yes yes 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 1 37.071 37.346 2 9.4054E-05 11957 20181213_JW_Orientia_Karp_1_1 160.18 118.75 120880000 37320000 25742000 38906000 0 8400900 0 10512000 0 10771 1089 9217 65695;65696;65697;65698;65699;65700;65701;65702;65703 41951;41952;41953;41954;41955;41956;41957;41958;41959 41951 601 9 YTNVDGMPELK Unmodified 1265.5962 0.59618837 1089 Karp_00229 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 47.162 47.495 2 0.00018089 16894 20181213_JW_Orientia_Karp_1_3 156.48 108.06 118400000 29390000 45573000 25969000 7374400 0 9547600 543930 0 10772 1089 9217 65704;65705;65706;65707;65708;65709 41960;41961;41962;41963 41962 4 YTPSGQAGAAASESLFVSNHAY Unmodified 2227.0182 0.018175845 1546 V9HWN7;P04075;J3KPS3;P04075-2;H3BR68 HEL-S-87p;ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 55.09 55.405 3 0.018165 22772 20181213_JW_Orientia_Karp_1_1 54.008 22.547 73721000 26485000 7485200 13742000 5650800 13350000 6421500 0 586260 10773 1546 9218 65710;65711;65712;65713;65714;65715;65716 41964 41964 1 YTPTQQGNMQVLVTYGGDPIPK Unmodified 2406.1889 0.18894634 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 61.879 62.062 2;3 1.7079E-39 26318 20181213_JW_Orientia_Karp_1_3 239.86 184.67 98328000 26869000 32658000 38801000 0 0 0 0 0 10774 1520 9219 65717;65718;65719;65720;65721;65722 41965;41966;41967 41967 3 YTPTQQGNMQVLVTYGGDPIPK Oxidation (M) 2422.1839 0.18386096 1520 O75369-2;O75369-9;O75369;A0A024R321;O75369-8;O75369-6;O75369-3;E7EN95;O75369-7;Q68CT4;O75369-5;O75369-4 FLNB;DKFZp686A1668 Filamin-B yes no 0 0 1 0 By MS/MS By MS/MS 2 1 55.859 56.034 2 1.7886E-12 22746 20181213_JW_Orientia_Karp_1_2 165.89 113.39 20851000 6992900 13858000 0 0 0 0 0 0 10775 1520 9219 65723;65724;65725 41968;41969 41969 1136 2 YTPVQQGPVGVNVTYGGDPIPK Unmodified 2285.1692 0.16919718 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.631 58.881 2 6.6901E-23 24625 20181213_JW_Orientia_Karp_1_2 202.79 161.21 254780000 72252000 97480000 58011000 16686000 5485100 4867300 0 0 10776 1615 9220 65726;65727;65728;65729;65730;65731 41970;41971;41972;41973;41974;41975 41971 6 YTQLINR Unmodified 906.49232 0.49231565 1128 Karp_00331 yes yes 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 33.54 33.913 2 0.0097814 9317 20181213_JW_Orientia_Karp_2_3 137.18 87.821 1072000000 310160000 236660000 349540000 62273000 38835000 0 51525000 22989000 10777 1128 9221 65732;65733;65734;65735;65736;65737;65738;65739 41976;41977;41978;41979;41980;41981;41982 41980 7 YVANLFPYK Unmodified 1113.5859 0.58588168 1804 Q5SQT6;V9HWB5;Q15181 PPA1;HEL-S-66p Inorganic pyrophosphatase yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 54.98 55.23 2 0.0024159 20378 20181213_JW_Orientia_Karp_2_1 116.54 0 52170000 17924000 0 20530000 4769700 4327900 4617500 0 0 10778 1804 9222 65740;65741;65742;65743;65744 41983;41984;41985 41984 3 YVASYLLAALGGNSSPSAK Unmodified 1867.968 0.96797818 238 A0A024RCA7;P05387 RPLP2 60S acidic ribosomal protein P2 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 2 2 2 2 2 68.324 68.517 2;3 1.7238E-165 27509 20181213_JW_Orientia_Karp_2_1 360.06 292.84 913010000 204980000 100640000 153410000 56457000 142060000 73054000 114050000 68360000 10779 238 9223 65745;65746;65747;65748;65749;65750;65751;65752;65753;65754;65755;65756;65757;65758;65759;65760;65761;65762;65763 41986;41987;41988;41989;41990;41991;41992;41993;41994;41995;41996 41993 11 YVASYLLAALGGNSSPSAK Deamidation (NQ) 1868.952 0.95199376 238 A0A024RCA7;P05387 RPLP2 60S acidic ribosomal protein P2 yes no 0 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 4 4 3 3 1 71.082 71.184 2;3 2.4938E-42 28523 20181213_JW_Orientia_Karp_2_1 246.66 185.97 1169700000 318020000 157340000 172350000 52990000 115580000 87794000 222360000 43277000 10780 238 9223 65764;65765;65766;65767;65768;65769;65770;65771;65772;65773;65774;65775;65776;65777;65778;65779;65780;65781;65782;65783;65784;65785;65786;65787 41997;41998;41999;42000;42001;42002;42003;42004;42005;42006;42007 42001 92 10 YVDSEGHLYTVPIR Unmodified 1647.8257 0.82567103 1766 Q2TNI1;Q03135 CAV1 Caveolin;Caveolin-1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 46.669 47 2;3 0.00051315 15786 20181213_JW_Orientia_Karp_2_2 131.32 87.509 3447100000 1468500000 593170000 682580000 166140000 63510000 192280000 28891000 252070000 10781 1766 9224 65788;65789;65790;65791;65792;65793;65794;65795;65796;65797;65798;65799;65800;65801;65802 42008;42009;42010;42011;42012;42013;42014;42015;42016;42017;42018;42019 42016 12 YVECSALTQK Unmodified 1197.57 0.56997362 199 A0A024RAE4;B7ZAY4;B4DMH5;B4E1U9;P60953 CDC42 Cell division control protein 42 homolog yes no 0 0 0 0 By MS/MS By matching By matching 1 1 1 33.443 33.843 2 0.0041849 9745 20181213_JW_Orientia_Karp_1_2 104.42 45.074 39498000 0 14462000 20914000 0 0 0 4121600 0 10782 199 9225 65803;65804;65805 42020 42020 1 YVELINQAAR Unmodified 1175.6299 0.62987176 1020 I3UJJ7;P12821-2;P12821;F6X3S4;B4DXK6;D3DU13;L7MUH0;I6L9B3;P12821-4;P12821-3;J3KTB8 ACE Angiotensin-converting enzyme;Angiotensin-converting enzyme, soluble form yes no 0 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 44.507 44.819 2 0.0041849 16129 20181213_JW_Orientia_Karp_1_1 104.42 62.547 34670000 11114000 14679000 0 2415600 0 5178600 0 1282800 10783 1020 9226 65806;65807;65808;65809;65810 42021 42021 1 YVELPFLDPNINK Unmodified 1560.8188 0.81879474 1154 Karp_00560 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 72.386 72.45 2 0.0022594 32943 20181213_JW_Orientia_Karp_1_3 123.67 73.476 173600000 55774000 40937000 32662000 5154100 8576700 6333400 24163000 0 10784 1154 9227 65811;65812;65813;65814;65815;65816;65817 42022;42023;42024;42025;42026;42027 42024 6 YVGETQPTGQIK Unmodified 1319.6721 0.67213051 2015 Q9Y3Z3;Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3-2 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 33.413 33.763 2 1.8413E-05 9731 20181213_JW_Orientia_Karp_1_2 175.33 97.061 76663000 25547000 26873000 18001000 2379500 0 0 3862100 0 10785 2015 9228 65818;65819;65820;65821;65822 42028;42029;42030 42029 3 YVGVSSDSVGGFR Unmodified 1328.6361 0.63607935 1799 Q14677;Q14677-3;Q14677-2 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 46.769 47.069 2 2.6387E-05 15893 20181213_JW_Orientia_Karp_3_1 175.33 125.61 124030000 56214000 36489000 28917000 0 0 0 2415200 0 10786 1799 9229 65823;65824;65825;65826 42031;42032;42033 42033 3 YVIEGLTYPENTAGR Unmodified 1681.8312 0.83115034 1422 Karp_02306 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 55.953 56.334 2 3.4108E-06 22918 20181213_JW_Orientia_Karp_1_2 172.76 123.76 50647000 21889000 10027000 0 6310200 5429200 4713800 1621400 656110 10787 1422 9230 65827;65828;65829;65830;65831;65832;65833;65834 42034;42035;42036;42037;42038;42039 42036 6 YVIYIER Unmodified 954.51747 0.51746776 1039 J3KTJ8;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;E5RIT6;Q9UNX3;J3KS10 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 47.543 47.844 2 0.026322 15373 20181213_JW_Orientia_Karp_3_2 94.262 40.796 148110000 47898000 43552000 18520000 14541000 9398400 11017000 0 3181700 10788 1039 9231 65835;65836;65837;65838;65839;65840;65841 42040 42040 1 YVLINWVGEDVPDAR Unmodified 1744.8784 0.87843489 1815 Q16643;Q16643-3;Q16643-2;D6R9W4;D6RFI1;D6RCR4 DBN1 Drebrin yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 69.572 69.706 2 0.00058979 31459 20181213_JW_Orientia_Karp_1_2 159.5 103.41 35442000 14182000 6511400 0 0 0 0 14749000 0 10789 1815 9232 65842;65843;65844;65845 42041;42042;42043 42042 3 YVLLNLTSNK Unmodified 1163.655 0.65502388 1342 Karp_01516 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 54.28 54.546 2 0.0021688 21836 20181213_JW_Orientia_Karp_1_2 114.51 82.642 54472000 10829000 14360000 12900000 4313600 4385500 7683400 0 0 10790 1342 9233 65846;65847;65848;65849;65850;65851 42044;42045;42046;42047 42045 4 YVQPGVTSNLLNK Unmodified 1431.7722 0.7721789 1322 Karp_01288 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.098 48.443 2 0.00082784 17761 20181213_JW_Orientia_Karp_1_2 145.14 56.108 560280000 156440000 154960000 89814000 48469000 18887000 18057000 3314300 70337000 10791 1322 9234 65852;65853;65854;65855;65856;65857;65858;65859 42048;42049;42050;42051;42052;42053;42054 42049 7 YVSLIYTNYEAGK Unmodified 1519.7559 0.75586013 756 C7DJS2 GSTP1 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 54.588 54.904 2 2.1312E-17 22397 20181213_JW_Orientia_Karp_1_1 220.29 155.01 160890000 36983000 30724000 61350000 9318200 10214000 11129000 0 1167600 10792 756 9235 65860;65861;65862;65863;65864;65865;65866 42055;42056;42057;42058;42059;42060;42061 42055 7 YVSQYYPK Unmodified 1046.5073 0.50729701 1846 Q5SSJ5;X6RGJ2;Q5SSJ5-2;B0QZK4;Q5SWC8;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 35.072 35.361 2 0.016011 10535 20181213_JW_Orientia_Karp_1_2 94.114 38.438 136240000 43300000 35882000 35868000 0 0 0 0 21193000 10793 1846 9236 65867;65868;65869;65870 42062 42062 1 YVWLVYEQDRPLK Unmodified 1707.8984 0.89844205 856 D9IAI1;P30086;B4DRT4;V9HW05 HEL-S-34;PEBP1;HEL-210 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes no 0 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 55.119 55.429 3 0.0029081 20545 20181213_JW_Orientia_Karp_2_1 118.77 90.483 40498000 7103100 0 12206000 3666600 9819800 7627900 0 74754 10794 856 9237 65871;65872;65873;65874;65875;65876 42063;42064 42063 2 YVYTSSPSSDDQEQSSKPEPILQPILPK Unmodified 3132.5503 0.55029062 1193 Karp_00798 yes yes 0 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 58.173 58.46 3 1.6434E-11 24701 20181213_JW_Orientia_Karp_1_1 147.75 120.83 1003200000 257690000 335010000 201160000 83406000 55075000 69569000 0 1280800 10795 1193 9238 65877;65878;65879;65880;65881;65882;65883 42065;42066;42067;42068;42069;42070;42071;42072 42065 8 YWDNVEAFQARPDDLVIATYPK Unmodified 2610.2755 0.27545316 1690 Q53X91;P49888 SULT1E1 Sulfotransferase;Estrogen sulfotransferase yes no 0 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 67.411 67.638 3 4.6612E-05 26354 20181213_JW_Orientia_Karp_3_2 123.41 89.401 59708000 16629000 13288000 14230000 0 5460100 0 5126800 4974500 10796 1690 9239 65884;65885;65886;65887;65888;65889 42073;42074;42075;42076 42076 4 YWEAFLPEAK Unmodified 1252.6128 0.61282471 508 H0YK42;Q59GU6;Q53GG3;B3KN57;B3KML1;Q53HL9;Q53GY8;O60749-2;Q13596-2;O60749;Q13596 SNX1;SNX2 Sorting nexin-2;Sorting nexin-1 yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 63.003 63.185 2 0.0014366 27006 20181213_JW_Orientia_Karp_1_3 118.18 75.579 10471000 5247400 0 5010900 213030 0 0 0 0 10797 508 9240 65890;65891;65892;65893 42077;42078;42079 42078 3 YWIWALTAK Unmodified 1150.6175 0.61751616 1135 Karp_00415 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 68.123 68.309 2 0.00079758 30807 20181213_JW_Orientia_Karp_1_1 141.39 77.909 21971000 4517700 3943700 3002200 1124000 4959000 2972700 0 1451400 10798 1135 9241 65894;65895;65896;65897;65898;65899;65900 42080;42081;42082;42083;42084;42085;42086 42080 7 YWPQEAGEYAVHVLCNSEDIR Unmodified 2535.1489 0.14887244 1615 P21333-2;P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9 FLNA Filamin-A yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 65.026 65.253 3 0.011551 28494 20181213_JW_Orientia_Karp_1_2 64.843 42.142 67349000 11813000 22764000 19167000 0 5178600 0 5736100 2690100 10799 1615 9242 65901;65902;65903;65904;65905;65906 42087;42088 42087 2 YYASSESTATSPETQHNPK Unmodified 2096.9287 0.92869214 1115 Karp_00303 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 26.712 27.022 3 0.028906 6609 20181213_JW_Orientia_Karp_1_3 91.616 69.462 117380000 34282000 18466000 27807000 0 22215000 0 14611000 0 10800 1115 9243 65907;65908;65909;65910;65911 42089;42090;42091;42092 42092 4 YYDDTYPSVK Unmodified 1249.5503 0.55028404 215 Q53FU3;A0A024RB72;F8VVA7;P61923;P61923-4;F8VXB1;F8VUC5;F8W156;F8VXR1;F8VYZ4;P61923-5 COPZ1 Coatomer subunit zeta-1 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 40.788 41.088 2 0.0027495 13483 20181213_JW_Orientia_Karp_1_2 111.61 58.821 38883000 16261000 8355400 10908000 0 0 0 3358600 0 10801 215 9244 65912;65913;65914;65915 42093;42094 42093 2 YYDSRPGGYGYGYGR Unmodified 1729.7485 0.74848335 7 A0A024QYX3;P98179 RBM3 RNA-binding protein 3 yes no 0 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 36.667 37.04 3 0.035757 10685 20181213_JW_Orientia_Karp_2_1 73.887 56.086 60901000 22480000 6500000 8872200 6688100 5686200 0 7483500 3191100 10802 7 9245 65916;65917;65918;65919;65920;65921;65922 42095 42095 1 YYEGYYAAGPGYGGR Unmodified 1642.7052 0.70522155 730 B7Z871;B7ZLW0;Q93052;C9JXK9;C9JUT4 LPP Lipoma-preferred partner yes no 0 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 46.038 46.323 2 1.4438E-08 15388 20181213_JW_Orientia_Karp_2_2 182.28 144.32 29468000 8771400 7389300 0 3246500 3735600 4013100 0 2312400 10803 730 9246 65923;65924;65925;65926;65927;65928;65929 42096;42097;42098;42099;42100;42101 42099 6 YYGGGSEGGR Unmodified 1001.4203 0.42027292 477 B2R959;Q6NTA2;P14866;B4DPK8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1 2 19.762 20.04 2 0.0015098 3885 20181213_JW_Orientia_Karp_1_2 117.81 80.652 11879000 3526400 2951300 3104000 500590 210480 299710 1286100 0 10804 477 9247 65930;65931;65932;65933;65934;65935;65936;65937;65938 42102;42103;42104 42103 3 YYGYTGAFR Unmodified 1096.4978 0.49779495 808 CON__Q29443;CON__Q0IIK2;B4E1V0;B2MV14;B7ZAL5;E7EQB2;B3KSL2;E7ER44;Q2TUW9;V9HWI4;W8QEY1;Q5EK51;B3VMW0;A8K494;P02788-2;P02788 LTF;HEL110 Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes no 0 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 44.339 44.655 2 0.00077089 14692 20181213_JW_Orientia_Karp_2_1 149.4 94.789 33752000 6869500 0 3562900 4938100 6301000 8164300 3124500 791390 + 10805 808 9248 65939;65940;65941;65942;65943;65944;65945;65946 42105;42106;42107;42108;42109 42105 5 YYIPEVVSVEQV Unmodified 1423.7235 0.72349737 1200 Karp_00819 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 73.487 73.516 2 1.0683E-22 33957 20181213_JW_Orientia_Karp_1_2 227.27 160.06 401930000 108690000 64604000 64253000 0 32007000 41721000 85302000 5348600 10806 1200 9249 65947;65948;65949;65950;65951;65952;65953 42110;42111;42112;42113;42114;42115;42116 42111 7 YYLQNNDSLPSDFISDLK Unmodified 2131.011 0.010965202 1311 Karp_01258 yes yes 0 0 0 0 By MS/MS 1 71.137 71.137 2 0.028222 32418 20181213_JW_Orientia_Karp_1_1 73.91 51.377 4614200 4614200 0 0 0 0 0 0 0 10807 1311 9250 65954 42117 42117 1 YYLVQGLIEDCQLALQQK Acetyl (Protein N-term);2 Deamidation (NQ) 2225.0926 0.092586341 988 I3L1U2;H3BM90;Q8WZ19 KCTD13 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1 yes no 1 2 0 0 By MS/MS By matching By matching By matching 1 1 1 1 62.379 62.592 3 0.03327 27357 20181213_JW_Orientia_Karp_1_1 41.088 11.046 33852000 12451000 0 0 1473000 12835000 7093300 0 0 10808 988 9251 65955;65956;65957;65958 42118 42118 1747;1748;1749 1 YYNDYVK Unmodified 963.4338 0.43379771 1118 Karp_00308 yes yes 0 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 33.904 34.262 2 0.024832 9216 20181213_JW_Orientia_Karp_2_1 96.19 37.408 88207000 28820000 31205000 14427000 3082200 3901000 1077400 3589700 2105000 10809 1118 9252 65959;65960;65961;65962;65963;65964;65965;65966 42119;42120 42120 2 YYPEVDASLSLPSIEK Unmodified 1809.9036 0.90364658 1123 Karp_00323 yes yes 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 66.334 66.512 2 1.3947E-05 29263 20181213_JW_Orientia_Karp_1_2 179.67 137.25 64310000 16151000 12116000 17414000 2833100 8444900 5099300 2252500 0 10810 1123 9253 65967;65968;65969;65970;65971;65972;65973 42121;42122;42123;42124 42122 4 YYPTEDVPR Unmodified 1138.5295 0.52948901 226 Q8TBK5;Q8N5Z7;B2R4K7;A0A024RBK3;Q9HBB3;Q02878;F8VR69;F8VZ45;U3KQR5 RPL6 60S ribosomal protein L6 yes no 0 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.737 39.987 2 0.0074455 12839 20181213_JW_Orientia_Karp_1_2 99.136 50.076 325860000 96228000 63766000 145100000 11082000 7047500 2636000 0 0 10811 226 9254 65974;65975;65976;65977;65978;65979 42125;42126 42125 2 YYTSASGDEMVSLK Oxidation (M) 1565.6919 0.69193925 1057 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q96HX7;Q86U12 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 40.839 41.164 2 8.917E-10 13550 20181213_JW_Orientia_Karp_1_2 205.52 138.86 56296000 21109000 0 22683000 3998800 0 0 8505400 0 10812 1057 9255 65980;65981;65982;65983;65984 42127;42128;42129;42130;42131 42128 576 5 YYTSASGDEMVSLK Unmodified 1549.697 0.69702463 1057 K9JA46;P07900;P07900-2;Q2VPJ6;Q8TBA7;O75322;Q96HX7;Q86U12 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 47.414 47.776 2 4.3638E-25 17314 20181213_JW_Orientia_Karp_1_2 229 173.19 65975000 15673000 22732000 20233000 0 0 0 1209800 6127400 10813 1057 9255 65985;65986;65987;65988;65989 42132;42133;42134;42135 42133 4 YYVTIIDAPGHR Unmodified 1403.7197 0.7197494 1746 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q53GE9;Q53G85;Q5VTE0;P68104;B4DNE0;A8K9C4;Q6IQ15;Q96RE1;Q53GA1;B4DV42;Q9NZS6;Q9H2I7;Q16577;A9X7H1;A6PW80;Q5JR01 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 46.777 47.038 2;3 0.0062253 16901 20181213_JW_Orientia_Karp_1_2 115.29 79.622 180700000 50129000 83363000 39619000 2296700 4382900 0 905260 0 10814 1746 9256 65990;65991;65992;65993;65994;65995;65996;65997;65998 42136;42137;42138;42139 42137 4