Raw file Experiment Enzyme Enzyme mode Enzyme first search Enzyme mode first search Use enzyme first search Variable modifications Multi modifications Variable modifications first search Use variable modifications first search Requantify Multiplicity Max. missed cleavages Labels0 LC-MS run type Time-dependent recalibration MS MS/MS MS3 MS/MS Submitted MS/MS Submitted (SIL) MS/MS Submitted (ISO) MS/MS Submitted (PEAK) MS/MS Identified MS/MS Identified (SIL) MS/MS Identified (ISO) MS/MS Identified (PEAK) MS/MS Identified [%] MS/MS Identified (SIL) [%] MS/MS Identified (ISO) [%] MS/MS Identified (PEAK) [%] Peptide Sequences Identified Peaks Peaks Sequenced Peaks Sequenced [%] Peaks Repeatedly Sequenced Peaks Repeatedly Sequenced [%] Isotope Patterns Isotope Patterns Sequenced Isotope Patterns Sequenced (z>1) Isotope Patterns Sequenced [%] Isotope Patterns Sequenced (z>1) [%] Isotope Patterns Repeatedly Sequenced Isotope Patterns Repeatedly Sequenced [%] Recalibrated Av. Absolute Mass Deviation [ppm] Mass Standard Deviation [ppm] Av. Absolute Mass Deviation [mDa] Mass Standard Deviation [mDa] Label free norm param 20181213_JW_Orientia_Karp_1_1 1_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ) False True 1 2 Standard 3976 35917 0 47935 23891 0 24044 7110 6555 0 555 14.83 27.44 NaN 2.31 5640 403063 27819 6.9 1706 6.13 74574 20920 20053 28.05 32.97 2603 12.44 + 1.1708 1.4855 0.81515 1.0836 20181213_JW_Orientia_Karp_1_2 1_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ) False True 1 2 Standard 4524 35455 0 47338 23572 0 23766 7015 6438 0 577 14.82 27.31 NaN 2.43 5516 421372 27558 6.54 1830 6.64 78044 20508 19632 26.28 31.2 2712 13.22 + 1.1534 1.4815 0.81056 1.0957 20181213_JW_Orientia_Karp_1_3 1_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ) False True 1 2 Standard 2948 36941 0 49184 24698 0 24486 6900 6421 0 479 14.03 26 NaN 1.96 5481 426818 28903 6.77 1818 6.29 78688 21598 20592 27.45 32.69 2725 12.62 + 1.1552 1.4888 0.80397 1.0881 20181213_JW_Orientia_Karp_2_1 2_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ) False True 1 2 Standard 2992 31635 0 43957 19307 0 24650 4136 3745 0 391 9.41 19.4 NaN 1.59 3381 443458 23760 5.36 1719 7.23 72884 16766 15802 23 27.47 2199 13.12 + 1.3591 1.6972 0.92855 1.2145 20181213_JW_Orientia_Karp_2_2 2_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ) False True 1 2 Standard 3072 31878 0 43915 19841 0 24074 4549 4199 0 350 10.36 21.16 NaN 1.45 3705 401308 24109 6.01 1647 6.83 65281 17197 16330 26.34 30.38 2248 13.07 + 1.2262 1.5665 0.83015 1.0989 20181213_JW_Orientia_Karp_2_3 2_3 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ) False True 1 2 Standard 2996 32206 0 45301 19111 0 26190 4250 3916 0 334 9.38 20.49 NaN 1.28 3455 388563 23600 6.07 1667 7.06 62988 16515 15704 26.22 30.67 2248 13.61 + 1.1411 1.4782 0.77582 1.0452 20181213_JW_Orientia_Karp_3_1 3_1 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ) False True 1 2 Standard 2921 29318 0 40066 18470 0 21596 3986 3713 0 273 9.95 20.1 NaN 1.26 3265 395036 22178 5.61 1528 6.89 65049 16091 15178 24.74 29.69 2044 12.7 + 1.2116 1.5538 0.84937 1.1355 20181213_JW_Orientia_Karp_3_2 3_2 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ) False True 1 2 Standard 3075 30554 0 45054 15944 0 29110 3469 2969 0 500 7.7 18.62 NaN 1.72 2795 426663 21027 4.93 1653 7.86 66447 13715 12810 20.64 25.46 1964 14.32 + 1.5045 1.8461 1.0625 1.3525 1_1 5640 1_2 5516 1_3 5481 2_1 3381 2_2 3705 2_3 3455 3_1 3265 3_2 2795 Total 26504 263904 0 362750 164834 0 197916 41415 37956 0 3459 11.42 23.03 NaN 1.75 9257 3306281 563955 143310 136101 25.41 30.2 18743 13.08 1.2165 1.5526 0.84359 1.1255