Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
20190510_RS_XS_19	BRG1_786O_WT	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ)	Carbamidomethyl (C)		Oxidation (M);Acetyl (Protein N-term)	True	True	1	2		Standard		3767	25622	0	35825	15419	0	20406	232	185	0	47	0.65	1.2	NaN	0.23	216	429289	19214	4.48	1272	6.62	50470	13151	12131	26.06	35.15	1877	14.27	+	1.8568	2.2427	1.3641	1.7312	
20190510_RS_XS_20	BRG1_786O_WT	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ)	Carbamidomethyl (C)		Oxidation (M);Acetyl (Protein N-term)	True	True	1	2		Standard		4057	24416	0	34861	13971	0	20890	367	295	0	72	1.05	2.11	NaN	0.34	336	429821	17942	4.17	1227	6.84	48081	11875	11007	24.7	31.66	1730	14.57	+	1.2558	1.5914	0.91238	1.2273	
20190510_RS_XS_21	BRG1_786O_WT	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ)	Carbamidomethyl (C)		Oxidation (M);Acetyl (Protein N-term)	True	True	1	2		Standard		3380	24376	0	34047	14703	0	19344	252	202	0	50	0.74	1.37	NaN	0.26	241	387589	18286	4.72	1222	6.68	47686	12624	11742	26.47	34.7	1743	13.81	+	1.8145	2.1777	1.3181	1.6478	
20190510_RS_XS_22	BRG1_786O_KO	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ)	Carbamidomethyl (C)		Oxidation (M);Acetyl (Protein N-term)	True	True	1	2		Standard		3444	25136	0	35297	14975	0	20322	272	225	0	47	0.77	1.5	NaN	0.23	259	403541	18745	4.65	1240	6.62	49074	12834	11910	26.15	33.99	1799	14.02	+	1.6563	1.9927	1.2244	1.5327	
20190510_RS_XS_23	BRG1_786O_KO	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ)	Carbamidomethyl (C)		Oxidation (M);Acetyl (Protein N-term)	True	True	1	2		Standard		3433	23229	0	32736	13714	0	19022	355	315	0	40	1.08	2.3	NaN	0.21	322	396502	17178	4.33	1158	6.74	46214	11712	10928	25.34	32.73	1684	14.38	+	1.3611	1.7535	1.0064	1.3545	
20190510_RS_XS_24	BRG1_786O_KO	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Deamidation (NQ)	Carbamidomethyl (C)		Oxidation (M);Acetyl (Protein N-term)	True	True	1	2		Standard		3526	25353	0	35554	15146	0	20408	292	259	0	33	0.82	1.71	NaN	0.16	276	403436	18925	4.69	1245	6.58	48626	13028	12153	26.79	34.72	1782	13.68	+	1.6093	1.9966	1.1251	1.437	
Total																		21607	148132	0	208320	87928	0	120392	1770	1481	0	289	0.85	1.68	NaN	0.24	815	2450178					290151	75224	69871	25.93	33.83	10615	14.11		1.5492	1.9297	1.1265	1.4654