Proteins	Positions within proteins	Leading proteins	Protein	Protein names	Gene names	Fasta headers	Localization prob	Score diff	PEP	Score	Delta score	Score for localization	Localization prob 191220_hirano_17_10	Score diff 191220_hirano_17_10	PEP 191220_hirano_17_10	Score 191220_hirano_17_10	Diagnostic peak	Number of Phospho (STY)	Amino acid	Sequence window	Modification window	Peptide window coverage	Phospho (STY) Probabilities	Phospho (STY) Score diffs	Position in peptide	Charge	Mass error [ppm]	Intensity	Intensity___1	Intensity___2	Intensity___3	Ratio mod/base	Intensity 191220_hirano_17_10	Ratio mod/base 191220_hirano_17_10	Intensity 191220_hirano_17_10___1	Intensity 191220_hirano_17_10___2	Intensity 191220_hirano_17_10___3	Occupancy 191220_hirano_17_10	Occupancy ratio191220_hirano_17_10	Occupancy error scale 191220_hirano_17_10	Reverse	Potential contaminant	id	Protein group IDs	Positions	Position	Peptide IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best localization evidence ID	Best localization MS/MS ID	Best localization raw file	Best localization scan number	Best score evidence ID	Best score MS/MS ID	Best score raw file	Best score scan number	Best PEP evidence ID	Best PEP MS/MS ID	Best PEP raw file	Best PEP scan number
P12954	146	P12954	P12954	ATP-dependent DNA helicase SRS2	SRS2	sp|P12954|SRS2_YEAST ATP-dependent DNA helicase SRS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SRS2 PE=1 SV=2	0.999731	40.474	0.0315978	75.652	46.407	75.652	0.999731	40.474	0.0315978	75.652			Y	ILDDMIEKVPDQIRDYASSITRKVNLCMPSK	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXPPPPPPPPPPPPPPXXXXXXXXX	VPDQIRDY(1)ASSITR	VPDQIRDY(40.47)AS(-40.47)S(-40.47)IT(-40.47)R	8	2	-3.1698	435350	435350	0	0	NaN	435350	NaN	435350	0	0						0	29	146	146	347	347	390	407	390	407	191220_hirano_17_10	2865	390	407	191220_hirano_17_10	2865	390	407	191220_hirano_17_10	2865
P33755	108	P33755	P33755	Nuclear protein localization protein 4	NPL4	sp|P33755|NPL4_YEAST Nuclear protein localization protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NPL4 PE=1 SV=1	1	50.0245	0.0382776	50.025	13.324	50.025	1	50.0245	0.0382776	50.025		1	Y	IGSVGIDSKGIRQHRYGPLRIKELAVDEELE	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXPPPPPPPPXXXXXXXXXXX	QHRY(1)GPLR	QHRY(50.02)GPLR	4	2	-0.31436	3490900	3490900	0	0	NaN	3490900	NaN	3490900	0	0						1	47	108	108	266	266	304	316	304	316	191220_hirano_17_10	1269	304	316	191220_hirano_17_10	1269	304	316	191220_hirano_17_10	1269
P40498	633	P40498	P40498	U3 small nucleolar RNA-associated protein 25	UTP25	sp|P40498|UTP25_YEAST U3 small nucleolar RNA-associated protein 25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP25 PE=1 SV=1	0.852742	7.62738	0.0383323	44.721	15.345	44.721	0.852742	7.62738	0.0383323	44.721	+	1	Y	ANRSLFQQGRLKVMLYTERLHHYRRYEIKGV	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXPPPPPPPXXXXXXXXXXXX	VMLY(0.853)T(0.147)ER	VMLY(7.63)T(-7.63)ER	4	2	0.59385	664080	664080	0	0	NaN	664080	NaN	664080	0	0						2	61	633	633	345	345	388	405	388	405	191220_hirano_17_10	2467	388	405	191220_hirano_17_10	2467	388	405	191220_hirano_17_10	2467
P53735	545	P53735	P53735	Protein ZRG17	ZRG17	sp|P53735|ZRG17_YEAST Protein ZRG17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ZRG17 PE=1 SV=1	0.908227	9.95835	0.0320977	68.657	27.257	68.657	0.908227	9.95835	0.0320977	68.657		1	Y	MIKDQIERLSEFKSRYILNYDDIVISKVNFT	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPPPPPXXXX	Y(0.908)ILNY(0.092)DDIVISK	Y(9.96)ILNY(-9.96)DDIVIS(-40.8)K	1	2	-3.0804	248530	248530	0	0	NaN	248530	NaN	248530	0	0						3	69	545	545	375	375	420	437	420	437	191220_hirano_17_10	3408	420	437	191220_hirano_17_10	3408	420	437	191220_hirano_17_10	3408