Proteins	Positions within proteins	Leading proteins	Protein	Protein names	Gene names	Fasta headers	Localization prob	Score diff	PEP	Score	Delta score	Score for localization	Localization prob 191220_hirano_20_10	Score diff 191220_hirano_20_10	PEP 191220_hirano_20_10	Score 191220_hirano_20_10	Diagnostic peak	Number of Phospho (STY)	Amino acid	Sequence window	Modification window	Peptide window coverage	Phospho (STY) Probabilities	Phospho (STY) Score diffs	Position in peptide	Charge	Mass error [ppm]	Intensity	Intensity___1	Intensity___2	Intensity___3	Ratio mod/base	Intensity 191220_hirano_20_10	Ratio mod/base 191220_hirano_20_10	Intensity 191220_hirano_20_10___1	Intensity 191220_hirano_20_10___2	Intensity 191220_hirano_20_10___3	Occupancy 191220_hirano_20_10	Occupancy ratio191220_hirano_20_10	Occupancy error scale 191220_hirano_20_10	Reverse	Potential contaminant	id	Protein group IDs	Positions	Position	Peptide IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best localization evidence ID	Best localization MS/MS ID	Best localization raw file	Best localization scan number	Best score evidence ID	Best score MS/MS ID	Best score raw file	Best score scan number	Best PEP evidence ID	Best PEP MS/MS ID	Best PEP raw file	Best PEP scan number
P36775	25	P36775	P36775	Lon protease homolog, mitochondrial	PIM1	sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PIM1 PE=1 SV=2	0.942934	9.17072	0.0382378	62.107	25.436	62.107	0.942934	9.17072	0.0382378	62.107		2	S	LSTVARTTRAIQYYRSIAKTAAVSQRRFAST	X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXPPPPPPPPPPXXXXXXXXXXXX	AIQY(0.529)Y(0.529)RS(0.943)IAK	AIQY(0)Y(0)RS(9.17)IAK	7	2	1.2842	469700	0	469700	0	NaN	469700	NaN	0	469700	0						0	48	25	25	9	9	9	9	9	9	191220_hirano_20_10	2741	9	9	191220_hirano_20_10	2741	9	9	191220_hirano_20_10	2741
P36775	22	P36775	P36775	Lon protease homolog, mitochondrial	PIM1	sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PIM1 PE=1 SV=2	0.528533	0	0.0382378	62.107	25.436	62.107	0.528533	0	0.0382378	62.107	+	2	Y	TKTLSTVARTTRAIQYYRSIAKTAAVSQRRF	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXPPPPPPPPPPXXXXXXXXX	AIQY(0.529)Y(0.529)RS(0.943)IAK	AIQY(0)Y(0)RS(9.17)IAK	4	2	1.2842	469700	0	469700	0	NaN	469700	NaN	0	469700	0						1	48	22	22	9	9	9	9	9	9	191220_hirano_20_10	2741	9	9	191220_hirano_20_10	2741	9	9	191220_hirano_20_10	2741
P36775	23	P36775	P36775	Lon protease homolog, mitochondrial	PIM1	sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PIM1 PE=1 SV=2	0.528533	0	0.0382378	62.107	25.436	62.107	0.528533	0	0.0382378	62.107	+	2	Y	KTLSTVARTTRAIQYYRSIAKTAAVSQRRFA	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	AIQY(0.529)Y(0.529)RS(0.943)IAK	AIQY(0)Y(0)RS(9.17)IAK	5	2	1.2842	469700	0	469700	0	NaN	469700	NaN	0	469700	0						2	48	23	23	9	9	9	9	9	9	191220_hirano_20_10	2741	9	9	191220_hirano_20_10	2741	9	9	191220_hirano_20_10	2741
P38960	459	P38960	P38960	Protein STN1	STN1	sp|P38960|STN1_YEAST Protein STN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=STN1 PE=1 SV=1	1	64.7574	0.0302824	64.757	17.69	64.757	1	64.7574	0.0302824	64.757	+	1	Y	IVDVFKECLKRTKKQYPEVLKNWWIDLDPKN	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXPPPPPPPXXXXXXXXXX	QY(1)PEVLK	QY(64.76)PEVLK	2	2	-0.96648	1609500	1609500	0	0	NaN	1609500	NaN	1609500	0	0						3	52	459	459	233	233	283	304	283	304	191220_hirano_20_10	2185	283	304	191220_hirano_20_10	2185	283	304	191220_hirano_20_10	2185
P43548	552	P43548	P43548	General amino acid permease AGP3	AGP3	sp|P43548|AGP3_YEAST General amino acid permease AGP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=AGP3 PE=1 SV=1	0.998414	30.6118	0.033533	78.324	19.208	78.324	0.998414	30.6118	0.033533	78.324	+	1	Y	SSETMKDYKSATFFRYLSNIFT_________	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXPPPPPPPPPPPPPXXXXXXXXX	S(0.001)AT(0.001)FFRY(0.998)LSNIFT	S(-31.44)AT(-30.61)FFRY(30.61)LS(-56.52)NIFT(-60.86)	7	3	2.1924	698160	698160	0	0	NaN	698160	NaN	698160	0	0						4	59	552	552	240	240	291	312	291	312	191220_hirano_20_10	1844	291	312	191220_hirano_20_10	1844	291	312	191220_hirano_20_10	1844
Q02455	1595	Q02455	Q02455	Protein MLP1	MLP1	sp|Q02455|MLP1_YEAST Protein MLP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MLP1 PE=1 SV=2	1	118.743	0.00748232	118.74	72.727	118.74	1	118.743	0.00748232	118.74		1	Y	LEAKVQEKQKELENEYNKKLQEELKDVPHSS	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXPPPPPPPPPXXXXXXXXXXXX	ELENEY(1)NKK	ELENEY(118.74)NKK	6	2	1.9787	196400	196400	0	0	NaN	196400	NaN	196400	0	0						5	67	1595	1595	53	53	59	61	59	61	191220_hirano_20_10	1174	59	61	191220_hirano_20_10	1174	59	61	191220_hirano_20_10	1174
Q02651	168	Q02651	Q02651	Spore membrane assembly protein 1	SMA1	sp|Q02651|SMA1_YEAST Spore membrane assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SMA1 PE=4 SV=1	1	62.715	0.0315414	62.715	26.159	62.715	1	62.715	0.0315414	62.715	+	1	Y	RSPWESMEIQYQKFMYPLERLERQFEEVPFR	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXPPPPPPPXXXXXXXXXXX	FMY(1)PLER	FMY(62.72)PLER	3	2	-2.7038	3085000	3085000	0	0	NaN	3085000	NaN	3085000	0	0						6	68	168	168	71	71	80	82	80	82	191220_hirano_20_10	1703	80	82	191220_hirano_20_10	1703	80	82	191220_hirano_20_10	1703
Q03280	1469	Q03280	Q03280	E3 ubiquitin-protein ligase TOM1	TOM1	sp|Q03280|TOM1_YEAST E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TOM1 PE=1 SV=1	1	70.5516	0.0315566	70.552	20.1	70.552	1	70.5516	0.0315566	70.552		1	Y	LATSRILIFYSRDELYANNIARSGILSRLLK	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXPPPPPPPPPPXXXXXXXXX	DELY(1)ANNIAR	DELY(70.55)ANNIAR	4	3	1.449	333190	333190	0	0	NaN	333190	NaN	333190	0	0						7	69	1469	1469	35	35	36	37	36	37	191220_hirano_20_10	1240	36	37	191220_hirano_20_10	1240	36	37	191220_hirano_20_10	1240
Q12019	3655	Q12019	Q12019	Midasin	MDN1	sp|Q12019|MDN1_YEAST Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MDN1 PE=1 SV=1	0.98477	18.1064	0.0400196	62.717	21.215	62.717	0.98477	18.1064	0.0400196	62.717	+	1	Y	ETPNVYTKENKKRLAYLKTQKSKLLGDALKE	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXPPPPPPPPXXXXXXXXXX	LAY(0.985)LKT(0.015)QK	LAY(18.11)LKT(-18.11)QK	3	2	-0.66645	1505900	1505900	0	0	NaN	1505900	NaN	1505900	0	0						8	77	3655	3655	148	148	181	193	181	193	191220_hirano_20_10	2601	181	193	191220_hirano_20_10	2601	181	193	191220_hirano_20_10	2601