Proteins	Positions within proteins	Leading proteins	Protein	Protein names	Gene names	Fasta headers	Localization prob	Score diff	PEP	Score	Delta score	Score for localization	Localization prob 191219_hirano_1_10	Score diff 191219_hirano_1_10	PEP 191219_hirano_1_10	Score 191219_hirano_1_10	Diagnostic peak	Number of Phospho (STY)	Amino acid	Sequence window	Modification window	Peptide window coverage	Phospho (STY) Probabilities	Phospho (STY) Score diffs	Position in peptide	Charge	Mass error [ppm]	Intensity	Intensity___1	Intensity___2	Intensity___3	Ratio mod/base	Intensity 191219_hirano_1_10	Ratio mod/base 191219_hirano_1_10	Intensity 191219_hirano_1_10___1	Intensity 191219_hirano_1_10___2	Intensity 191219_hirano_1_10___3	Occupancy 191219_hirano_1_10	Occupancy ratio191219_hirano_1_10	Occupancy error scale 191219_hirano_1_10	Reverse	Potential contaminant	id	Protein group IDs	Positions	Position	Peptide IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best localization evidence ID	Best localization MS/MS ID	Best localization raw file	Best localization scan number	Best score evidence ID	Best score MS/MS ID	Best score raw file	Best score scan number	Best PEP evidence ID	Best PEP MS/MS ID	Best PEP raw file	Best PEP scan number
P27636	35	P27636	P27636	Cell division control protein 15	CDC15	sp|P27636|CDC15_YEAST Cell division control protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC15 PE=1 SV=3	0.997785	24.7378	0.0141519	102.4	19.65	102.4	0.997785	24.7378	0.0141519	102.4			S	EKSVQYHLKQVIGRGSYGVVYKAINKHTDQV	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX	GS(0.998)Y(0.662)GVVY(0.34)KAINK	GS(24.74)Y(2.9)GVVY(-2.9)KAINK	2	2	1.6367	273250	0	273250	0	NaN	273250	NaN	0	273250	0						0	25	35	35	106	106	124	140	124	140	191219_hirano_1_10	3363	124	140	191219_hirano_1_10	3363	124	140	191219_hirano_1_10	3363
P38764	19	P38764	P38764	26S proteasome regulatory subunit RPN1	RPN1	sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPN1 PE=1 SV=3	0.390467	0	0.0263513	71.946	71.946	71.946	0.390467	0	0.0263513	71.946			S	ESDKKQQTIDEQSQISPEKQTPNKKDKKKEE	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);Phospho (ST);X;X;X;X;Phospho (ST);X;X;X;X;X;X;X;X;X;X	XXXXXPPPPPPPPPPPPPPPPPPPPXXXXXX	QQT(0.136)IDEQS(0.109)QIS(0.39)PEKQT(0.365)PNKK	QQT(-5.36)IDEQS(-5.36)QIS(0)PEKQT(0)PNKK	11	3	-0.755	0	0	0	0	0	0	0	0	0	0						1	45	19	19	262	265			374	430	191219_hirano_1_10	1693	374	430	191219_hirano_1_10	1693	374	430	191219_hirano_1_10	1693
P47061	36	P47061	P47061	Vacuolar protein sorting-associated protein 53	VPS53	sp|P47061|VPS53_YEAST Vacuolar protein sorting-associated protein 53 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS53 PE=1 SV=1	1	85.6723	0.0268611	85.672	29.693	85.672	1	85.6723	0.0268611	85.672		2	S	KESLNNIDELISITRSYKKQLQEDILKEENE	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPPPPPXXXX	S(1)Y(1)KKQLQEDILK	S(85.67)Y(85.67)KKQLQEDILK	1	2	0.56037	12915000	0	12915000	0	NaN	12915000	NaN	0	12915000	0						2	54	36	36	323	326	454	515	454	515	191219_hirano_1_10	1847	454	515	191219_hirano_1_10	1847	454	515	191219_hirano_1_10	1847
P38764	24	P38764	P38764	26S proteasome regulatory subunit RPN1	RPN1	sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPN1 PE=1 SV=3	0.364584	0	0.0263513	71.946	71.946	71.946	0.364584	0	0.0263513	71.946			T	QQTIDEQSQISPEKQTPNKKDKKKEEEEQLS	X;X;X;X;X;X;X;X;X;X;Phospho (ST);X;X;X;X;Phospho (ST);X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (ST)	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	QQT(0.136)IDEQS(0.109)QIS(0.39)PEKQT(0.365)PNKK	QQT(-5.36)IDEQS(-5.36)QIS(0)PEKQT(0)PNKK	16	3	-0.755	0	0	0	0	0	0	0	0	0	0						3	45	24	24	262	265			374	430	191219_hirano_1_10	1693	374	430	191219_hirano_1_10	1693	374	430	191219_hirano_1_10	1693
P40105;P0CX22;P0CX21;P0CX20;P53819;P0CX15;P0CX14	283;397;397;397;461;461;461	P40105	P40105	Y' element ATP-dependent helicase protein 1 copy 2;Y' element ATP-dependent helicase protein 1 copy 8;Y' element ATP-dependent helicase protein 1 copy 5;Y' element ATP-dependent helicase protein 1 copy 1;Y' element ATP-dependent helicase protein 1 copy 6;Y' element ATP-dependent helicase protein 1 copy 7;Y' element ATP-dependent helicase protein 1 copy 3	YRF1-2;YRF1-8;YRF1-5;YRF1-1;YRF1-6;YRF1-7;YRF1-3	sp|P40105|YRF12_YEAST Y' element ATP-dependent helicase protein 1 copy 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YRF1-2 PE=2 SV=2;sp|P0CX22|YRF18_YEAST Y' element ATP-dependent helicase protein 1 copy 8 OS=Saccharomyces cerevi	0.876555	8.51305	0.0277888	53.493	20.436	53.493	0.876555	8.51305	0.0277888	53.493	+	1	Y	SSDGVSVCGKLFNREYVRGFYFACKAQFDNL	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXPPPPPPPPPPPXXXXXX	EY(0.877)VRGFY(0.123)FACK	EY(8.51)VRGFY(-8.51)FACK	2	2	-2.1892	6823500	6823500	0	0	NaN	6823500	NaN	6823500	0	0						4	17	283	283	65	65	68	80	68	80	191219_hirano_1_10	2166	68	80	191219_hirano_1_10	2166	68	80	191219_hirano_1_10	2166
P13382	1140	P13382	P13382	DNA polymerase alpha catalytic subunit A	POL1	sp|P13382|DPOA_YEAST DNA polymerase alpha catalytic subunit A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=POL1 PE=1 SV=2	0.999992	50.9919	0.0262319	52.693	52.693	52.693	0.999992	50.9919	0.0262319	52.693	+	1	Y	DKYKINMKLSKDPKAYPGGKNMPAVQVALRM	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXPPPPPPPPPPPPXXXXXXXXXXX	LSKDPKAY(1)PGGK	LS(-50.99)KDPKAY(50.99)PGGK	8	3	0.49904	549630	549630	0	0	NaN	549630	NaN	549630	0	0						5	20	1140	1140	207	208	296	344	296	344	191219_hirano_1_10	3975	296	344	191219_hirano_1_10	3975	296	344	191219_hirano_1_10	3975
P27636	36	P27636	P27636	Cell division control protein 15	CDC15	sp|P27636|CDC15_YEAST Cell division control protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC15 PE=1 SV=3	0.661772	2.90042	0.0141519	102.4	19.65	102.4	0.661772	2.90042	0.0141519	102.4			Y	KSVQYHLKQVIGRGSYGVVYKAINKHTDQVV	X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXPPPPPPPPPPPPXXXXXX	GS(0.998)Y(0.662)GVVY(0.34)KAINK	GS(24.74)Y(2.9)GVVY(-2.9)KAINK	3	2	1.6367	273250	0	273250	0	NaN	273250	NaN	0	273250	0						6	25	36	36	106	106	124	140	124	140	191219_hirano_1_10	3363	124	140	191219_hirano_1_10	3363	124	140	191219_hirano_1_10	3363
P32368	216	P32368	P32368	Phosphoinositide phosphatase SAC1	SAC1	sp|P32368|SAC1_YEAST Phosphoinositide phosphatase SAC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SAC1 PE=1 SV=1	1	55.6761	0.0266508	55.676	23.066	55.676	1	55.6761	0.0266508	55.676	+	1	Y	LGLITRRSIFRAGTRYFRRGVDKDGNVGNFN	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPXXXXXXXX	Y(1)FRRGVDK	Y(55.68)FRRGVDK	1	2	5.0571	633690	633690	0	0	NaN	633690	NaN	633690	0	0						7	28	216	216	394	397	542	616	542	616	191219_hirano_1_10	1200	542	616	191219_hirano_1_10	1200	542	616	191219_hirano_1_10	1200
P32485	68	P32485	P32485	Mitogen-activated protein kinase HOG1	HOG1	sp|P32485|HOG1_YEAST Mitogen-activated protein kinase HOG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HOG1 PE=1 SV=2	0.999751	36.0436	0.0217473	68.398	29.58	68.398	0.999751	36.0436	0.0217473	68.398	+	1	Y	KIMKPFSTAVLAKRTYRELKLLKHLRHENLI	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXPPPPPPPXXXXXXXXXXX	RTY(1)RELK	RT(-36.04)Y(36.04)RELK	3	2	-2.4803	247820	247820	0	0	NaN	247820	NaN	247820	0	0						8	29	68	68	275	278	390	446	390	446	191219_hirano_1_10	1212	390	446	191219_hirano_1_10	1212	390	446	191219_hirano_1_10	1212
P33314	118	P33314	P33314	Inhibitory regulator protein BUD2/CLA2	BUD2	sp|P33314|BUD2_YEAST Inhibitory regulator protein BUD2/CLA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BUD2 PE=1 SV=2	1	79.4686	0.0257509	79.469	45.382	79.469	1	79.4686	0.0257509	79.469	+		Y	NFIIQVNTSGKDNKVYLRVKSWSDFKKLLTC	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXPPPPPPPXXXXXXXXXXXXX	DNKVY(1)LR	DNKVY(79.47)LR	5	2	1.9045	130670	130670	0	0	NaN	130670	NaN	130670	0	0						9	36	118	118	36	36	37	39	37	39	191219_hirano_1_10	1322	37	39	191219_hirano_1_10	1322	37	39	191219_hirano_1_10	1322
P38222	374	P38222	P38222	Ribosomal lysine N-methyltransferase 3	RKM3	sp|P38222|RKM3_YEAST Ribosomal lysine N-methyltransferase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RKM3 PE=1 SV=1	1	47.5743	0.0268492	47.574	26.025	47.574	1	47.5743	0.0268492	47.574	+	1	Y	HLGPDFMKILKKEEKYQEKVKWWSQVGHGLF	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXPPPPPPPPXXXXXXXXXXXX	KEEKY(1)QEK	KEEKY(47.57)QEK	5	3	-0.25854	8376000	8376000	0	0	NaN	8376000	NaN	8376000	0	0						10	42	374	374	151	151	189	206	189	206	191219_hirano_1_10	1218	189	206	191219_hirano_1_10	1218	189	206	191219_hirano_1_10	1218
P38889	262	P38889	P38889	Transcription factor SKN7	SKN7	sp|P38889|SKN7_YEAST Transcription factor SKN7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKN7 PE=1 SV=1	0.99675	26.5393	0.0271383	61.691	32.894	61.691	0.99675	26.5393	0.0271383	61.691		1	Y	VDKLQKELDMSKMESYATKVELQKLNSKYNT	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXPPPPPPPPPPPPXXXXXXX	MES(0.001)Y(0.997)AT(0.002)KVELQK	MES(-29.82)Y(26.54)AT(-26.54)KVELQK	4	2	-0.18652	410260	410260	0	0	NaN	410260	NaN	410260	0	0						11	48	262	262	216	217	305	353	305	353	191219_hirano_1_10	2998	305	353	191219_hirano_1_10	2998	305	353	191219_hirano_1_10	2998
P47061	37	P47061	P47061	Vacuolar protein sorting-associated protein 53	VPS53	sp|P47061|VPS53_YEAST Vacuolar protein sorting-associated protein 53 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS53 PE=1 SV=1	1	85.6723	0.0268611	85.672	29.693	85.672	1	85.6723	0.0268611	85.672		2	Y	ESLNNIDELISITRSYKKQLQEDILKEENEL	X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX	S(1)Y(1)KKQLQEDILK	S(85.67)Y(85.67)KKQLQEDILK	2	2	0.56037	12915000	0	12915000	0	NaN	12915000	NaN	0	12915000	0						12	54	37	37	323	326	454	515	454	515	191219_hirano_1_10	1847	454	515	191219_hirano_1_10	1847	454	515	191219_hirano_1_10	1847
P53141	108	P53141	P53141	Myosin light chain 1	MLC1	sp|P53141|MLC1_YEAST Myosin light chain 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MLC1 PE=1 SV=1	0.996239	24.2308	0.0254627	78.77	13.144	78.77	0.996239	24.2308	0.0254627	78.77		1	Y	FDKESTGKVSVGDLRYMLTGLGEKLTDAEVD	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPPXXXXXXX	Y(0.996)MLT(0.004)GLGEK	Y(24.23)MLT(-24.23)GLGEK	1	2	2.9818	2421900	2421900	0	0	NaN	2421900	NaN	2421900	0	0						13	57	108	108	398	401	558	632	558	632	191219_hirano_1_10	1529	558	632	191219_hirano_1_10	1529	558	632	191219_hirano_1_10	1529