Proteins	Positions within proteins	Leading proteins	Protein	Protein names	Gene names	Fasta headers	Localization prob	Score diff	PEP	Score	Delta score	Score for localization	Localization prob 191219_hirano_2_10	Score diff 191219_hirano_2_10	PEP 191219_hirano_2_10	Score 191219_hirano_2_10	Diagnostic peak	Number of Phospho (STY)	Amino acid	Sequence window	Modification window	Peptide window coverage	Phospho (STY) Probabilities	Phospho (STY) Score diffs	Position in peptide	Charge	Mass error [ppm]	Intensity	Intensity___1	Intensity___2	Intensity___3	Ratio mod/base	Intensity 191219_hirano_2_10	Ratio mod/base 191219_hirano_2_10	Intensity 191219_hirano_2_10___1	Intensity 191219_hirano_2_10___2	Intensity 191219_hirano_2_10___3	Occupancy 191219_hirano_2_10	Occupancy ratio191219_hirano_2_10	Occupancy error scale 191219_hirano_2_10	Reverse	Potential contaminant	id	Protein group IDs	Positions	Position	Peptide IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best localization evidence ID	Best localization MS/MS ID	Best localization raw file	Best localization scan number	Best score evidence ID	Best score MS/MS ID	Best score raw file	Best score scan number	Best PEP evidence ID	Best PEP MS/MS ID	Best PEP raw file	Best PEP scan number
P38764	19	P38764	P38764	26S proteasome regulatory subunit RPN1	RPN1	sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPN1 PE=1 SV=3	0.403932	0	0.00789408	96.579	96.579	96.579	0.403932	0	0.00789408	96.579			S	ESDKKQQTIDEQSQISPEKQTPNKKDKKKEE	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);Phospho (ST);X;X;X;X;Phospho (ST);X;X;X;X;X;X;X;X;X;X	XXXXXPPPPPPPPPPPPPPPPPPPPXXXXXX	QQT(0.003)IDEQS(0.096)QIS(0.404)PEKQT(0.497)PNKK	QQT(-22.98)IDEQS(-6.32)QIS(0)PEKQT(0)PNKK	11	3	-0.41486	0	0	0	0	0	0	0	0	0	0						0	38	19	19	258	259			333	362	191219_hirano_2_10	1682	333	362	191219_hirano_2_10	1682	333	362	191219_hirano_2_10	1682
P38764	24	P38764	P38764	26S proteasome regulatory subunit RPN1	RPN1	sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPN1 PE=1 SV=3	0.496748	0	0.00789408	96.579	96.579	96.579	0.496748	0	0.00789408	96.579			T	QQTIDEQSQISPEKQTPNKKDKKKEEEEQLS	X;X;X;X;X;X;X;X;X;X;Phospho (ST);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	QQT(0.003)IDEQS(0.096)QIS(0.404)PEKQT(0.497)PNKK	QQT(-22.98)IDEQS(-6.32)QIS(0)PEKQT(0)PNKK	16	3	-0.41486	0	0	0	0	0	0	0	0	0	0						1	38	24	24	258	259			333	362	191219_hirano_2_10	1682	333	362	191219_hirano_2_10	1682	333	362	191219_hirano_2_10	1682
P09932	496	P09932	P09932	Homothallic switching endonuclease	HO	sp|P09932|HO_YEAST Homothallic switching endonuclease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HO PE=1 SV=2	0.499099	0	0.0217514	68.735	28.158	68.735	0.499099	0	0.0217514	68.735			Y	KNLKHCVACPRKGIKYFYKDWSGKNRVCARC	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPPPPXXXXX	Y(0.499)FY(0.499)KDWS(0.002)GKNR	Y(0)FY(0)KDWS(-24.43)GKNR	1	2	2.5971	0	0	0	0	NaN	0	NaN	0	0	0						2	23	496	496	368	369			478	521	191219_hirano_2_10	2604	478	521	191219_hirano_2_10	2604	478	521	191219_hirano_2_10	2604
P09932	498	P09932	P09932	Homothallic switching endonuclease	HO	sp|P09932|HO_YEAST Homothallic switching endonuclease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HO PE=1 SV=2	0.499099	0	0.0217514	68.735	28.158	68.735	0.499099	0	0.0217514	68.735			Y	LKHCVACPRKGIKYFYKDWSGKNRVCARCYG	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	Y(0.499)FY(0.499)KDWS(0.002)GKNR	Y(0)FY(0)KDWS(-24.43)GKNR	3	2	2.5971	0	0	0	0	NaN	0	NaN	0	0	0						3	23	498	498	368	369			478	521	191219_hirano_2_10	2604	478	521	191219_hirano_2_10	2604	478	521	191219_hirano_2_10	2604