Proteins	Positions within proteins	Leading proteins	Protein	Protein names	Gene names	Fasta headers	Localization prob	Score diff	PEP	Score	Delta score	Score for localization	Localization prob 191219_hirano_5_10	Score diff 191219_hirano_5_10	PEP 191219_hirano_5_10	Score 191219_hirano_5_10	Diagnostic peak	Number of Phospho (STY)	Amino acid	Sequence window	Modification window	Peptide window coverage	Phospho (STY) Probabilities	Phospho (STY) Score diffs	Position in peptide	Charge	Mass error [ppm]	Intensity	Intensity___1	Intensity___2	Intensity___3	Ratio mod/base	Intensity 191219_hirano_5_10	Ratio mod/base 191219_hirano_5_10	Intensity 191219_hirano_5_10___1	Intensity 191219_hirano_5_10___2	Intensity 191219_hirano_5_10___3	Occupancy 191219_hirano_5_10	Occupancy ratio191219_hirano_5_10	Occupancy error scale 191219_hirano_5_10	Reverse	Potential contaminant	id	Protein group IDs	Positions	Position	Peptide IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best localization evidence ID	Best localization MS/MS ID	Best localization raw file	Best localization scan number	Best score evidence ID	Best score MS/MS ID	Best score raw file	Best score scan number	Best PEP evidence ID	Best PEP MS/MS ID	Best PEP raw file	Best PEP scan number
P53153	244	P53153	P53153	Probable endonuclease LCL3	LCL3	sp|P53153|LCL3_YEAST Probable endonuclease LCL3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LCL3 PE=1 SV=1	0.333333	0	0.0297059	69.198	23.069	69.198	0.333333	0	0.0297059	69.198	+		Y	YEGKVNTEFDDREDKYRYYEFLARSRKKGLW	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPPXXXXXXX	Y(0.333)RY(0.333)Y(0.333)EFLAR	Y(0)RY(0)Y(0)EFLAR	1	2	-3.0471	0	0	0	0	NaN	0	NaN	0	0	0						0	43	244	244	342	342			419	474	191219_hirano_5_10	3204	419	474	191219_hirano_5_10	3204	419	474	191219_hirano_5_10	3204
P53153	246	P53153	P53153	Probable endonuclease LCL3	LCL3	sp|P53153|LCL3_YEAST Probable endonuclease LCL3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LCL3 PE=1 SV=1	0.333333	0	0.0297059	69.198	23.069	69.198	0.333333	0	0.0297059	69.198	+		Y	GKVNTEFDDREDKYRYYEFLARSRKKGLWIQ	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	Y(0.333)RY(0.333)Y(0.333)EFLAR	Y(0)RY(0)Y(0)EFLAR	3	2	-3.0471	0	0	0	0	NaN	0	NaN	0	0	0						1	43	246	246	342	342			419	474	191219_hirano_5_10	3204	419	474	191219_hirano_5_10	3204	419	474	191219_hirano_5_10	3204
P53153	247	P53153	P53153	Probable endonuclease LCL3	LCL3	sp|P53153|LCL3_YEAST Probable endonuclease LCL3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LCL3 PE=1 SV=1	0.333333	0	0.0297059	69.198	23.069	69.198	0.333333	0	0.0297059	69.198	+		Y	KVNTEFDDREDKYRYYEFLARSRKKGLWIQN	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	Y(0.333)RY(0.333)Y(0.333)EFLAR	Y(0)RY(0)Y(0)EFLAR	4	2	-3.0471	0	0	0	0	NaN	0	NaN	0	0	0						2	43	247	247	342	342			419	474	191219_hirano_5_10	3204	419	474	191219_hirano_5_10	3204	419	474	191219_hirano_5_10	3204
P53294	200	P53294	P53294	tRNA pseudouridine(31) synthase	PUS6	sp|P53294|PUS6_YEAST tRNA pseudouridine(31) synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PUS6 PE=1 SV=1	1	81.2963	0.0228091	81.296	34.87	81.296	1	81.2963	0.0228091	81.296		1	Y	GEIQKSIRSRDMIKIYLARVKGRFPHSELIL	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXPPPPPPPPPXXXXXXXXXXXX	DMIKIY(1)LAR	DMIKIY(81.3)LAR	6	2	1.5055	6650600	6650600	0	0	NaN	6650600	NaN	6650600	0	0						3	45	200	200	37	37	38	38	38	38	191219_hirano_5_10	1974	38	38	191219_hirano_5_10	1974	38	38	191219_hirano_5_10	1974
Q06116	2375	Q06116	Q06116	Uncharacterized protein YPR117W	YPR117W	sp|Q06116|YP117_YEAST Uncharacterized protein YPR117W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YPR117W PE=1 SV=1	0.999998	57.3676	0.0230997	77.923	9.9064	77.923	0.999998	57.3676	0.0230997	77.923	+	1	Y	LTDVNNLIVRVPVLKYHNKLWSREEFFTALK	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPXXXXXXXX	Y(1)HNKLWSR	Y(57.37)HNKLWS(-57.37)R	1	2	-0.094906	6592700	6592700	0	0	NaN	6592700	NaN	6592700	0	0						4	54	2375	2375	335	335	411	466	411	466	191219_hirano_5_10	2455	411	466	191219_hirano_5_10	2455	411	466	191219_hirano_5_10	2455
Q07913	135	Q07913	Q07913	Non-structural maintenance of chromosomes element 1	NSE1	sp|Q07913|NSE1_YEAST Non-structural maintenance of chromosomes element 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NSE1 PE=1 SV=1	0.99998	50.2017	0.0332907	70.438	46.957	70.438	0.99998	50.2017	0.0332907	70.438	+	1	Y	VLQSIVLPESNRFFVYVNLASTEETKLATRF	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXPPPPPPPPPPPPPPXXXXX	FFVY(1)VNLASTEETK	FFVY(50.2)VNLAS(-50.2)T(-50.2)EET(-61.02)K	4	3	-0.41382	926130	926130	0	0	NaN	926130	NaN	926130	0	0						5	55	135	135	71	71	96	115	96	115	191219_hirano_5_10	2865	96	115	191219_hirano_5_10	2865	96	115	191219_hirano_5_10	2865
Q12674	1546	Q12674	Q12674	Probable phospholipid-transporting ATPase DNF3	DNF3	sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATPase DNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DNF3 PE=1 SV=1	0.985307	18.2646	0.0139224	93.374	41.143	93.374	0.985307	18.2646	0.0139224	93.374	+	1	Y	RQGWTWDKDPSTFTRYTDKVLSRPRTNSRAS	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPXXXXXXXX	Y(0.985)T(0.015)DKVLSR	Y(18.26)T(-18.26)DKVLS(-63.63)R	1	2	0.828	762210	762210	0	0	NaN	762210	NaN	762210	0	0						6	61	1546	1546	343	343	420	475	420	475	191219_hirano_5_10	1932	420	475	191219_hirano_5_10	1932	420	475	191219_hirano_5_10	1932