Proteins	Positions within proteins	Leading proteins	Protein	Protein names	Gene names	Fasta headers	Localization prob	Score diff	PEP	Score	Delta score	Score for localization	Localization prob 191219_hirano_6_10	Score diff 191219_hirano_6_10	PEP 191219_hirano_6_10	Score 191219_hirano_6_10	Diagnostic peak	Number of Phospho (STY)	Amino acid	Sequence window	Modification window	Peptide window coverage	Phospho (STY) Probabilities	Phospho (STY) Score diffs	Position in peptide	Charge	Mass error [ppm]	Intensity	Intensity___1	Intensity___2	Intensity___3	Ratio mod/base	Intensity 191219_hirano_6_10	Ratio mod/base 191219_hirano_6_10	Intensity 191219_hirano_6_10___1	Intensity 191219_hirano_6_10___2	Intensity 191219_hirano_6_10___3	Occupancy 191219_hirano_6_10	Occupancy ratio191219_hirano_6_10	Occupancy error scale 191219_hirano_6_10	Reverse	Potential contaminant	id	Protein group IDs	Positions	Position	Peptide IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best localization evidence ID	Best localization MS/MS ID	Best localization raw file	Best localization scan number	Best score evidence ID	Best score MS/MS ID	Best score raw file	Best score scan number	Best PEP evidence ID	Best PEP MS/MS ID	Best PEP raw file	Best PEP scan number
P20676	603	P20676	P20676	Nucleoporin NUP1	NUP1	sp|P20676|NUP1_YEAST Nucleoporin NUP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NUP1 PE=1 SV=1	0.422745	0	0.0290134	53.448	53.448	53.448	0.422745	0	0.0290134	53.448			S	KPTFSFSKSEEERKSSPISNEAAKPSFSFPG	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;Phospho (ST);X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXPPPPPPPPPPPXXXXXXX	KS(0.078)S(0.423)PIS(0.5)NEAAK	KS(-7.38)S(0)PIS(0)NEAAK	3	2	-5.782	0	0	0	0	NaN	0	NaN	0	0	0						0	26	603	603	157	158			185	200	191219_hirano_6_10	3014	185	200	191219_hirano_6_10	3014	185	200	191219_hirano_6_10	3014
P20676	606	P20676	P20676	Nucleoporin NUP1	NUP1	sp|P20676|NUP1_YEAST Nucleoporin NUP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NUP1 PE=1 SV=1	0.499727	0	0.0290134	53.448	53.448	53.448	0.499727	0	0.0290134	53.448			S	FSFSKSEEERKSSPISNEAAKPSFSFPGKPV	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	KS(0.078)S(0.423)PIS(0.5)NEAAK	KS(-7.38)S(0)PIS(0)NEAAK	6	2	-5.782	0	0	0	0	NaN	0	NaN	0	0	0						1	26	606	606	157	158			185	200	191219_hirano_6_10	3014	185	200	191219_hirano_6_10	3014	185	200	191219_hirano_6_10	3014
P38164	310	P38164	P38164	SEH-associated protein 4	SEA4	sp|P38164|SEA4_YEAST SEH-associated protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SEA4 PE=1 SV=2	0.998279	27.5511	0.0324072	45.915	17.11	45.915	0.998279	27.5511	0.0324072	45.915		2	S	SGAASRKYMNSCFRWSCVRNNEFATLHRGDT	X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXPPPPPPPPPPPPXXXXXXXXXXXX	Y(0.981)MNS(0.021)CFRWS(0.998)CVR	Y(17.11)MNS(-17.11)CFRWS(27.55)CVR	9	3	-5.4811	0	0	0	0	NaN	0	NaN	0	0	0						2	37	310	310	367	368	427	463	427	463	191219_hirano_6_10	3141	427	463	191219_hirano_6_10	3141	427	463	191219_hirano_6_10	3141
Q00684	84	Q00684	Q00684	Tyrosine-protein phosphatase CDC14	CDC14	sp|Q00684|CDC14_YEAST Tyrosine-protein phosphatase CDC14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC14 PE=1 SV=2	0.542789	0.0375664	0.0267254	58.63	58.63	58.63	0.542789	0.0375664	0.0267254	58.63		2	S	ILNDPENANKAVVFYSSASTRQRANAACMLC	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXPPPPPPPPPPPXXXXXXXXXX	AVVFY(0.079)S(0.543)S(0.554)AS(0.723)T(0.102)R	AVVFY(-9.16)S(0.04)S(-0.04)AS(3.55)T(-8.28)R	6	3	-4.9585	0	0	0	0	NaN	0	NaN	0	0	0						3	54	84	84	29	29	30	32	30	32	191219_hirano_6_10	1212	30	32	191219_hirano_6_10	1212	30	32	191219_hirano_6_10	1212
Q00684	87	Q00684	Q00684	Tyrosine-protein phosphatase CDC14	CDC14	sp|Q00684|CDC14_YEAST Tyrosine-protein phosphatase CDC14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC14 PE=1 SV=2	0.722996	3.5457	0.0267254	58.63	58.63	58.63	0.722996	3.5457	0.0267254	58.63		2	S	DPENANKAVVFYSSASTRQRANAACMLCCYM	X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXPPPPPPPPPPPXXXXXXXXXXXXX	AVVFY(0.079)S(0.543)S(0.554)AS(0.723)T(0.102)R	AVVFY(-9.16)S(0.04)S(-0.04)AS(3.55)T(-8.28)R	9	3	-4.9585	0	0	0	0	NaN	0	NaN	0	0	0						4	54	87	87	29	29	30	32	30	32	191219_hirano_6_10	1212	30	32	191219_hirano_6_10	1212	30	32	191219_hirano_6_10	1212
P03874	539	P03874	P03874	Cytochrome B pre-mRNA-processing protein 2	CBP2	sp|P03874|CBP2_YEAST Cytochrome B pre-mRNA-processing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CBP2 PE=1 SV=2	0.999104	30.6683	0.0284268	59.245	17.369	59.245	0.999104	30.6683	0.0284268	59.245	+	1	Y	VNRPIQLRPITLSANYKIVILDKKNAIPEIF	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXPPPPPPPPPXXXXXXXXXXXXXX	PIT(0.001)LSANY(0.999)K	PIT(-30.67)LS(-44.09)ANY(30.67)K	8	3	0.44036	552710	552710	0	0	NaN	552710	NaN	552710	0	0						5	18	539	539	237	238	283	305	283	305	191219_hirano_6_10	1411	283	305	191219_hirano_6_10	1411	283	305	191219_hirano_6_10	1411
P25303	72	P25303	P25303	DnaJ-related protein SCJ1	SCJ1	sp|P25303|SCJ1_YEAST DnaJ-related protein SCJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SCJ1 PE=1 SV=2	0.972206	15.4381	0.0258774	43.548	19.464	43.548	0.972206	15.4381	0.0258774	43.548	+	1	Y	GSEEAHQKFIEVGEAYDVLSDPEKKKIYDQF	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXPPPPPPPPPPPPPPPPXXXXXXX	FIEVGEAY(0.972)DVLS(0.028)DPEK	FIEVGEAY(15.44)DVLS(-15.44)DPEK	8	3	-0.5857	47727000	47727000	0	0	NaN	47727000	NaN	47727000	0	0						6	28	72	72	73	73	79	92	79	92	191219_hirano_6_10	2512	79	92	191219_hirano_6_10	2512	79	92	191219_hirano_6_10	2512
P38164	302	P38164	P38164	SEH-associated protein 4	SEA4	sp|P38164|SEA4_YEAST SEH-associated protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SEA4 PE=1 SV=2	0.980949	17.1097	0.0324072	45.915	17.11	45.915	0.980949	17.1097	0.0324072	45.915	+	2	Y	LTFEKLVGSGAASRKYMNSCFRWSCVRNNEF	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X	XXXXXXXXXXXXXXXPPPPPPPPPPPPXXXX	Y(0.981)MNS(0.021)CFRWS(0.998)CVR	Y(17.11)MNS(-17.11)CFRWS(27.55)CVR	1	3	-5.4811	0	0	0	0	NaN	0	NaN	0	0	0						7	37	302	302	367	368	427	463	427	463	191219_hirano_6_10	3141	427	463	191219_hirano_6_10	3141	427	463	191219_hirano_6_10	3141
P53718	113	P53718	P53718	Transcription factor NRM1	NRM1	sp|P53718|NRM1_YEAST Transcription factor NRM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NRM1 PE=1 SV=1	0.850493	7.55008	0.030427	50.025	17.212	50.025	0.850493	7.55008	0.030427	50.025	+		Y	SELSKKLQIRLQFAYYKYKTKQTDKNFTDLK	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXPPPPPPPXXXXXXXXXXXXXX	LQFAY(0.15)Y(0.85)K	LQFAY(-7.55)Y(7.55)K	6	2	-4.4616	82374	82374	0	0	NaN	82374	NaN	82374	0	0						8	53	113	113	195	196	230	248	230	248	191219_hirano_6_10	1745	230	248	191219_hirano_6_10	1745	230	248	191219_hirano_6_10	1745
Q03262	167	Q03262	Q03262	Phosphoribomutase	PRM15	sp|Q03262|PGM3_YEAST Phosphoribomutase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PRM15 PE=1 SV=1	0.999726	40.3188	0.0254268	45.876	20.318	45.876	0.999726	40.3188	0.0254268	45.876		1	Y	GVMITASHNPKMDNGYKVYYSNGCQIIPPHD	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX	ASVGVMITASHNPKMDNGY(1)K	AS(-40.52)VGVMIT(-40.32)AS(-40.32)HNPKMDNGY(40.32)K	19	3	1.1069	2713800	2713800	0	0	NaN	2713800	NaN	2713800	0	0						9	59	167	167	20	20	20	22	20	22	191219_hirano_6_10	2187	20	22	191219_hirano_6_10	2187	20	22	191219_hirano_6_10	2187
Q12229	91	Q12229	Q12229	UBX domain-containing protein 3	UBX3	sp|Q12229|UBX3_YEAST UBX domain-containing protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UBX3 PE=1 SV=1	1	40.9205	0.0317294	40.921	20.22	40.921	1	40.9205	0.0317294	40.921	+		Y	RSSRLLKPLLRLHGFYQRKHNRLLDHSSQLH	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXPPPPPPPXXXXXXXXXXXXX	LHGFY(1)QR	LHGFY(40.92)QR	5	2	-0.68877	51759	51759	0	0	NaN	51759	NaN	51759	0	0						10	66	91	91	182	183	215	233	215	233	191219_hirano_6_10	1685	215	233	191219_hirano_6_10	1685	215	233	191219_hirano_6_10	1685
Q3E742	22	Q3E742	Q3E742	Uncharacterized protein YLR412C-A	YLR412C-A	sp|Q3E742|YL412_YEAST Uncharacterized protein YLR412C-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YLR412C-A PE=4 SV=1	1	51.0365	0.0308079	51.036	6.9197	51.036	1	51.0365	0.0308079	51.036		1	Y	GHYYKPHRASAEKVPYLKKKKKNSRNEGKAK	X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Phospho (STY);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X	XXXXXXXXXXXXXPPPPPPPXXXXXXXXXXX	VPY(1)LKKK	VPY(51.04)LKKK	3	2	-1.6096	728530	728530	0	0	NaN	728530	NaN	728530	0	0						11	72	22	22	345	346	404	439	404	439	191219_hirano_6_10	1665	404	439	191219_hirano_6_10	1665	404	439	191219_hirano_6_10	1665