Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
190506_IP_mESC_NE_1_control_03	1_control	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6091	57216	0	60107	54325	0	5782	30159	29623	0	536	50.18	54.53	NaN	9.27	15314	1074329	36583	3.41	12293	33.6	169685	31915	29532	18.81	22.43	12952	40.58	+	0.61991	0.90494	0.41301	0.62806	
190506_IP_mESC_NE_2_control_01	2_control	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6000	57502	0	60861	54143	0	6718	30782	30162	0	620	50.58	55.71	NaN	9.23	15389	1044604	35828	3.43	12704	35.46	164062	31215	28877	19.03	22.81	13050	41.81	+	0.63023	0.92305	0.41613	0.63551	
190506_IP_mESC_NE_2_control_02	2_control	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6028	57346	0	60778	53914	0	6864	30811	30223	0	588	50.69	56.06	NaN	8.57	15316	1028274	35952	3.5	12548	34.9	162699	31216	28984	19.19	22.89	12926	41.41	+	0.63131	0.91862	0.41654	0.63101	
190506_IP_mESC_NE_2_control_03	2_control	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6103	57040	0	60597	53483	0	7114	30645	30057	0	588	50.57	56.2	NaN	8.27	15138	1018343	35840	3.52	12410	34.63	160279	30915	28779	19.29	22.86	12944	41.87	+	0.62518	0.91085	0.41089	0.62163	
190506_IP_mESC_NE_4_Klf2_01	4_Klf2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6032	57787	0	60604	54970	0	5634	26424	26027	0	397	43.6	47.35	NaN	7.05	13587	1036785	36196	3.49	12289	33.95	162602	31388	29254	19.3	22.18	12888	41.06	+	0.63501	0.91813	0.42929	0.64847	
190506_IP_mESC_NE_4_Klf2_02	4_Klf2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6042	57782	0	60621	54943	0	5678	26279	25807	0	472	43.35	46.97	NaN	8.31	13730	1043943	36793	3.52	12153	33.03	165315	31999	29997	19.36	21.94	12807	40.02	+	0.63317	0.91334	0.43352	0.65776	
190506_IP_mESC_NE_4_Klf2_03	4_Klf2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6154	57452	0	60228	54676	0	5552	26340	25908	0	432	43.73	47.38	NaN	7.78	13688	1038442	36314	3.5	12262	33.77	161934	31463	29483	19.43	22.16	12921	41.07	+	0.62829	0.90905	0.4298	0.6576	
190514_IP_mESC_NE_1_control_01	1_control	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6026	57106	0	60335	53877	0	6458	29198	28678	0	520	48.39	53.23	NaN	8.05	14903	1056641	36076	3.41	12451	34.51	166521	31554	29194	18.95	22.78	13022	41.27	+	0.62334	0.90824	0.42082	0.6401	
190514_IP_mESC_NE_1_control_02	1_control	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6061	57110	0	60736	53484	0	7252	29084	28572	0	512	47.89	53.42	NaN	7.06	14908	1028566	35899	3.49	12446	34.67	163966	31501	29296	19.21	23.08	12998	41.26	+	0.62047	0.90225	0.41764	0.63335	
190514_IP_mESC_NE_3_Klf2_01	3_Klf2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6144	57175	0	60038	54312	0	5726	23032	22694	0	338	38.36	41.78	NaN	5.9	11689	1069289	36251	3.39	12183	33.61	168396	31565	29241	18.74	21.8	12718	40.29	+	0.64717	0.92854	0.4414	0.66282	
190514_IP_mESC_NE_3_Klf2_02	3_Klf2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6004	57868	0	60916	54820	0	6096	22996	22623	0	373	37.75	41.27	NaN	6.12	11745	1065775	36236	3.4	12337	34.05	168796	31497	29202	18.66	21.79	12810	40.67	+	0.65175	0.9361	0.44444	0.66378	
190514_IP_mESC_NE_3_Klf2_03	3_Klf2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term);Carbamyl (N-term)			False	False	1	2		Standard		6124	57297	0	60350	54244	0	6106	23193	22869	0	324	38.43	42.16	NaN	5.31	11804	1058043	36060	3.41	12235	33.93	167452	31385	29218	18.74	21.96	12825	40.86	+	0.65664	0.94034	0.45138	0.67687	
1_control																																19614																		
2_control																																19279																		
3_Klf2																																14682																		
4_Klf2																																16978																		
Total																	72809	688681	0	726171	651191	0	74980	328943	323243	0	5700	45.3	49.64	NaN	7.6	28486	12563034					1981707	377613	351057	19.05	22.38	154861	41.01		0.63253	0.91703	0.42584	0.64509