Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
191014_C19_029_QHF1_PTM_Rev01_#19_042_PAP295	EGFP-1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	True	1	2		Standard		11669	4838	0	6448	3228	0	3220	160	151	0	9	2.48	4.68	0	0.28	151	1059665	4274	0.4	145	3.39	65623	2981	2639	4.54	11.38	208	6.98	+	0.52666	0.64052	0.34537	0.4336	
191014_C19_029_QHF1_PTM_Rev01_#19_042_PAP296	EGFP-2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	True	1	2		Standard		11749	4719	0	6226	3212	0	3014	216	205	0	11	3.47	6.38	0	0.36	207	1052221	4175	0.4	122	2.92	66328	2997	2684	4.52	11.23	178	5.94	+	0.47225	0.61508	0.28108	0.35553	
191014_C19_029_QHF1_PTM_Rev01_#19_042_PAP297	EGFP-3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	True	1	2		Standard		11777	4658	0	6098	3218	0	2880	196	189	0	7	3.21	5.87	0	0.24	180	1050361	4143	0.39	131	3.16	65609	2991	2695	4.56	11.45	186	6.22	+	0.49494	0.64953	0.2984	0.40365	
191014_C19_029_QHF1_PTM_Rev01_#19_042_PAP298	dmPEBP-1	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	True	1	2		Standard		11815	4706	0	6112	3298	0	2814	202	186	0	16	3.3	5.64	0	0.57	184	1060873	4181	0.39	133	3.18	66863	3096	2810	4.63	11.71	179	5.78	+	0.52026	0.71453	0.30749	0.42371	
191014_C19_029_QHF1_PTM_Rev01_#19_042_PAP299	dmPEBP-2	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	True	1	2		Standard		11334	5922	0	7783	4059	0	3724	228	211	0	17	2.93	5.2	0	0.46	212	1118584	5275	0.47	166	3.15	79024	3751	3365	4.75	11.14	252	6.72	+	0.5561	0.76817	0.31415	0.42273	
191014_C19_029_QHF1_PTM_Rev01_#19_042_PAP300	dmPEBP-3	Trypsin/P	Specific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	True	1	2		Standard		11477	5626	0	7282	3968	0	3314	187	173	0	14	2.57	4.36	0	0.42	166	1065587	5044	0.47	184	3.65	70470	3689	3293	5.23	12.36	227	6.15	+	0.52361	0.74897	0.29532	0.41461	
Total																		69821	30469	0	39949	20983	0	18966	1189	1115	0	74	2.98	5.31	0	0.39	404	6407291					413917	19505	17486	4.71	11.55	1230	6.31		0.51549	0.69351	0.30563	0.4084