Chr	Start	End	Ref	Alt	Func.refGene	Gene.refGene	GeneDetail.refGene	ExonicFunc.refGene	AAChange.refGene	phastConsElements46way	genomicSuperDups	esp6500si_all	1000g2012apr_all	cosmic65	nci60	snp137	avsift	LJB_PhyloP	LJB_PhyloP_Pred	LJB_SIFT	LJB_SIFT_Pred	LJB_PolyPhen2	LJB_PolyPhen2_Pred	LJB_LRT	LJB_LRT_Pred	LJB_MutationTaster	LJB_MutationTaster_Pred	LJB_GERP++	tumor_ref	tumor_var	misRate_tumor	normal_ref	normal_var	misRate_normal	p-value(Fisher)	strandRatio_tumor	strandRatio_normal	tumor_realign(total,ref,alt,freq)	normal_realign(total,ref,alt,freq)	p-value(Realaign)	p-value(EBcall)
chr1	36821029	36821029	G	A	exonic	STK40		synonymous SNV	STK40:NM_032017:exon6:c.C348T:p.R116R	Score=487;Name=lod=127																			60	26	0.302	113	0	0.000	2.72659422575156254e-11	0.346	---	76,56,20,0.263	96,96,0,0.000	7.788	60
chr1	37271853	37271853	G	A	exonic	GRIK3		synonymous SNV	GRIK3:NM_000831:exon14:c.C2166T:p.N722N	Score=658;Name=lod=628		0.000077																	57	13	0.186	100	0	0.000	4.7770687747574372e-06	0.385	---	60,47,13,0.217	80,80,0,0.000	5.143	10.739
chr1	43850718	43850718	G	A	exonic	MED8		nonsynonymous SNV	MED8:NM_001001653:exon7:c.C535T:p.R179W,MED8:NM_052877:exon7:c.C802T:p.R268W,MED8:NM_201542:exon7:c.C802T:p.R268W	Score=631;Name=lod=488							0												94	56	0.373	147	0	0.000	5.59280443080151591e-20	0.518	---	120,75,45,0.375	111,110,0,0.000	14.642	60
chr1	43909057	43909057	G	A	exonic	SZT2		nonsynonymous SNV	SZT2:NM_015284:exon60:c.G8363A:p.R2788H	Score=516;Name=lod=167							0	0.999591	C	1.0	D	0.997	D	0.999998	D	0.931911	D	5.18	190	110	0.367	302	0	0.000	2.28163825784876184e-39	0.500	---	260,167,93,0.358	258,258,0,0.000	32.055	60
chr1	50884751	50884751	C	T	exonic	DMRTA2		synonymous SNV	DMRTA2:NM_032110:exon3:c.G1215A:p.P405P	Score=419;Name=lod=67																			83	15	0.153	187	0	0.000	5.22851947391746768e-08	0.400	---	75,64,11,0.147	145,145,0,0.000	5.365	5.088
chr1	51735782	51735782	A	G	exonic	RNF11		nonsynonymous SNV	RNF11:NM_014372:exon2:c.A278G:p.E93G	Score=710;Name=lod=1023							0.22	0.999063	C	0.78	T	0.0020	B	1.0	D	0.962899	D	5.56	42	22	0.344	72	0	0.000	6.27788164766194702e-09	0.182	---	54,35,19,0.352	58,58,0,0.000	6.883	10.086
chr1	66075759	66075759	C	A	exonic	LEPR		nonsynonymous SNV	LEPR:NM_001198687:exon12:c.C1882A:p.P628T,LEPR:NM_001198688:exon12:c.C1882A:p.P628T,LEPR:NM_001198689:exon12:c.C1882A:p.P628T,LEPR:NM_001003679:exon13:c.C1882A:p.P628T,LEPR:NM_001003680:exon13:c.C1882A:p.P628T,LEPR:NM_002303:exon13:c.C1882A:p.P628T	Score=448;Name=lod=88							0.01	0.972962	C	0.96	D	0.884	D	0.992771	N	0.501214	D	3.89	143	53	0.270	247	0	0.000	1.85445276299023235e-21	0.377	---	168,121,47,0.280	194,194,0,0.000	17.409	60
chr1	91382378	91382378	G	T	exonic	ZNF644		nonsynonymous SNV	ZNF644:NM_016620:exon4:c.C295A:p.L99I,ZNF644:NM_032186:exon4:c.C295A:p.L99I,ZNF644:NM_201269:exon6:c.C3961A:p.L1321I	Score=733;Name=lod=1266							0	0.999676	C	1.0	D	0.813	P	0.999038	N	0.834644	D	4.34	82	38	0.317	131	0	0.000	1.74858871457419398e-14	0.658	---	106,74,32,0.302	114,114,0,0.000	11.388	14.808
chr1	107973393	107973393	C	T	exonic	NTNG1		nonsynonymous SNV	NTNG1:NM_001113226:exon6:c.C1109T:p.S370F	Score=772;Name=lod=1831							0												74	36	0.327	109	0	0.000	9.36953284810426104e-13	0.639	---	90,60,30,0.333	91,91,0,0.000	10.373	60
chr1	145537509	145537509	C	T	exonic	ITGA10		nonsynonymous SNV	ITGA10:NM_003637:exon20:c.C2519T:p.T840M	Score=569;Name=lod=273							0	0.978023	C	0.99	D	1.0	D	0.999999	D	0.981641	D	3.27	101	39	0.279	128	0	0.000	1.05497925884658035e-12	0.359	---	121,87,34,0.281	99,99,0,0.000	9.696	60
chr1	155234030	155234030	C	T	exonic	CLK2		nonsynonymous SNV	CLK2:NM_003993:exon11:c.G1205A:p.R402Q	Score=545;Name=lod=219							0.03	0.997954	C	0.97	D	0.883	D	1.0	D	0.999998	D	4.17	95	35	0.269	119	0	0.000	1.07264563228844917e-11	0.600	---	105,78,27,0.257	98,98,0,0.000	8.489	13.308
chr1	161476210	161476210	G	T	exonic	FCGR2A		nonsynonymous SNV	FCGR2A:NM_001136219:exon3:c.G193T:p.A65S,FCGR2A:NM_021642:exon3:c.G190T:p.A64S				0			rs201099382	0.09	0.147221	N	0.45	T	0.0	B	0.938853	N	0.638362	D	-2.0	192	113	0.370	254	0	0.000	2.49118932536670898e-35	0.717	---	266,170,96,0.361	228,227,1,0.004	28.271	60
chr1	161641296	161641296	A	C	exonic	FCGR2B		nonsynonymous SNV	FCGR2B:NM_001190828:exon2:c.A227C:p.Q76P,FCGR2B:NM_001002273:exon3:c.A245C:p.Q82P,FCGR2B:NM_001002274:exon3:c.A248C:p.Q83P,FCGR2B:NM_001002275:exon3:c.A245C:p.Q82P,FCGR2B:NM_004001:exon3:c.A248C:p.Q83P		Score=0.986983;Name=chr1:161518643					rs5017567	0.01	0.034592	N	0.99	D	0.955	D	0.463467	N	0.693885	D	-1.48	224	60	0.211	319	0	0.000	6.03350435021235774e-22	0.550	---	252,193,59,0.234	269,268,0,0.000	20.284	60
chr1	166974588	166974588	C	T	exonic	MAEL		stopgain	MAEL:NM_032858:exon8:c.C799T:p.R267X	Score=540;Name=lod=208				ID=COSM169718;OCCURENCE=2(large_intestine)			0.85	0.980859	C	0.902861	NA	0.726709	NA	0.967639	N	1.0	A	4.07	60	41	0.406	130	0	0.000	6.11850587933463442e-18	0.488	---	78,48,30,0.385	104,104,0,0.000	12.743	60
chr1	192778203	192778203	T	C	exonic	RGS2		nonsynonymous SNV	RGS2:NM_002923:exon1:c.T2C:p.M1T	Score=472;Name=lod=110								0.996764	C	1.0	D	0.992	D	0.999964	D	0.046824	N	4.27	52	40	0.435	52	0	0.000	5.57493261322454238e-10	0.675	---	69,37,32,0.464	48,47,0,0.000	8.861	60
chr1	204403072	204403072	C	T	exonic	PIK3C2B		nonsynonymous SNV	PIK3C2B:NM_002646:exon26:c.G3692A:p.R1231H	Score=460;Name=lod=99		0.000077					0	0.999197	C	1.0	D	1.0	D	0.999998	D	0.902109	D	5.56	58	17	0.227	84	0	0.000	9.65431187865162541e-07	0.176	---	68,51,17,0.250	72,72,0,0.000	5.841	7.645
chr1	206711608	206711608	G	A	exonic	RASSF5		nonsynonymous SNV	RASSF5:NM_182663:exon2:c.G565A:p.V189M,RASSF5:NM_182664:exon2:c.G565A:p.V189M			0.000077	0.0046			rs148860285	0.02	0.077085	N	0.98	D	0.013	B	0.352611	N	2.8E-5	N	-4.49	110	42	0.276	181	0	0.000	1.4022796848436534e-16	0.429	---	125,88,37,0.296	142,142,0,0.000	13.638	8.707
chr1	216595459	216595459	C	T	exonic	USH2A		nonsynonymous SNV	USH2A:NM_007123:exon2:c.G220A:p.E74K,USH2A:NM_206933:exon2:c.G220A:p.E74K								0	0.051283	N	0.4	T	0.831	P	0.985143	U	0.632969	D	3.62	175	42	0.194	263	0	0.000	2.99753779460732194e-16	0.643	---	188,147,40,0.214	214,214,0,0.000	14.333	60
chr1	233490708	233490708	G	T	exonic	KIAA1804		nonsynonymous SNV	KIAA1804:NM_032435:exon4:c.G1262T:p.W421L	Score=623;Name=lod=453								0.999742	C	0.99	D	0.996	D	1.0	D	0.999301	D	5.0	50	37	0.425	112	0	0.000	2.16114654135006401e-16	0.378	---	72,43,29,0.403	87,87,0,0.000	11.653	60
chr1	235972590	235972590	T	C	exonic	LYST		nonsynonymous SNV	LYST:NM_000081:exon5:c.A1528G:p.M510V	Score=539;Name=lod=206							0.31	0.99724	C	1.0	D	0.974	D	0.999999	D	0.02271	N	3.84	74	30	0.288	100	0	0.000	1.8861561356828353e-10	0.600	---	90,64,26,0.289	89,89,0,0.000	8.443	60
chr1	247492533	247492533	C	T	exonic	ZNF496		synonymous SNV	ZNF496:NM_032752:exon3:c.G348A:p.A116A																				172	83	0.325	230	0	0.000	4.22969369355287733e-27	0.614	---	215,143,71,0.332	197,197,0,0.000	23.007	60
chr2	1481315	1481315	C	T	exonic	TPO		nonsynonymous SNV	TPO:NM_175721:exon7:c.C1277T:p.A426V,TPO:NM_000547:exon8:c.C1277T:p.A426V,TPO:NM_001206744:exon8:c.C1277T:p.A426V,TPO:NM_001206745:exon8:c.C1277T:p.A426V,TPO:NM_175719:exon8:c.C1277T:p.A426V					ID=COSM1399814;OCCURENCE=1(large_intestine)			0.01	0.954399	C	0.99	D	0.065	B	0.536561	N	0.002549	N	2.81	372	91	0.197	396	0	0.000	4.20012450939481287e-27	0.484	---	401,317,81,0.204	343,342,0,0.000	23.533	6.76
chr2	27603116	27603116	C	T	splicing	ZNF513	NM_144631:exon3:c.56-1G>A			Score=625;Name=lod=462																			289	63	0.179	225	0	0.000	3.47017698842780142e-15	0.413	---	299,247,52,0.174	193,193,0,0.000	12.017	60
chr2	39187333	39187333	C	T	exonic	ARHGEF33		synonymous SNV	ARHGEF33:NM_001145451:exon14:c.C1887T:p.Y629Y	Score=641;Name=lod=537							1												190	205	0.519	281	0	0.000	5.78360625438433439e-62	0.532	---	337,156,181,0.537	225,225,0,0.000	52.056	60
chr2	128389921	128389921	C	T	exonic	MYO7B		nonsynonymous SNV	MYO7B:NM_001080527:exon38:c.C5272T:p.R1758W	Score=321;Name=lod=27							0												208	49	0.191	210	0	0.000	2.07807959856484745e-14	0.510	---	205,163,42,0.205	160,160,0,0.000	11.261	60
chr2	131976311	131976311	C	T	exonic	POTEE		synonymous SNV	POTEE:NM_001083538:exon1:c.C336T:p.S112S		Score=0.985749;Name=chr2:130818815																		244	198	0.448	368	0	0.000	2.87439029546420216e-64	0.444	---	391,213,177,0.454	319,319,0,0.000	56.269	60
chr2	141571326	141571326	C	A	exonic	LRP1B		synonymous SNV	LRP1B:NM_018557:exon32:c.G5259T:p.G1753G	Score=668;Name=lod=692																			53	10	0.159	67	0	0.000	0.000479748198527927069	0.300	---	57,47,10,0.175	54,54,0,0.000	2.885	7.763
chr2	141571339	141571339	C	A	exonic	LRP1B		nonsynonymous SNV	LRP1B:NM_018557:exon32:c.G5246T:p.W1749L	Score=563;Name=lod=260				ID=COSM1399744;OCCURENCE=1(large_intestine)			0	0.999209	C	0.96	D	0.999	D	1.0	D	0.910077	D	5.58	49	11	0.183	65	0	0.000	0.000184814509743724593	0.364	---	53,43,10,0.189	55,55,0,0.000	3.298	9.443
chr2	170062108	170062108	G	A	exonic	LRP2		synonymous SNV	LRP2:NM_004525:exon41:c.C7596T:p.I2532I	Score=548;Name=lod=224																			62	73	0.541	117	0	0.000	5.9389150000539184e-26	0.411	---	115,55,59,0.518	97,96,0,0.000	19.676	60
chr2	179605233	179605233	C	T	exonic	TTN		nonsynonymous SNV	TTN:NM_003319:exon45:c.G11638A:p.D3880N,TTN:NM_001256850:exon46:c.G11776A:p.D3926N,TTN:NM_133432:exon46:c.G12013A:p.D4005N,TTN:NM_133437:exon46:c.G12214A:p.D4072N,TTN:NM_001267550:exon48:c.G12727A:p.D4243N																				163	150	0.479	208	0	0.000	3.44478241205907396e-42	0.440	---	271,140,130,0.481	179,179,0,0.000	35.979	60
chr2	185803471	185803471	C	T	exonic	ZNF804A		synonymous SNV	ZNF804A:NM_194250:exon4:c.C3348T:p.A1116A			0.000461				rs149962176													91	83	0.477	179	0	0.000	5.87405605229041496e-32	0.422	---	148,77,67,0.465	152,152,0,0.000	25.476	60
chr2	210594929	210594929	C	A	exonic	MAP2		nonsynonymous SNV	MAP2:NM_031845:exon12:c.C1224A:p.F408L,MAP2:NM_031847:exon13:c.C1317A:p.F439L,MAP2:NM_001039538:exon15:c.C1488A:p.F496L,MAP2:NM_002374:exon15:c.C5292A:p.F1764L	Score=628;Name=lod=477							0.01	0.997693	C	0.99	D	0.998	D	0.999991	D	0.997412	D	5.17	49	67	0.578	82	0	0.000	2.51992005051312577e-21	0.642	---	95,42,53,0.558	72,72,0,0.000	16.800	60
chr2	216251426	216251426	C	T	exonic	FN1		nonsynonymous SNV	FN1:NM_002026:exon27:c.G4325A:p.G1442D,FN1:NM_212474:exon27:c.G4325A:p.G1442D,FN1:NM_212476:exon27:c.G4325A:p.G1442D,FN1:NM_212478:exon27:c.G4325A:p.G1442D,FN1:NM_212482:exon28:c.G4598A:p.G1533D	Score=495;Name=lod=137							0	0.939331	N	0.99	D	0.998	D	1.0	D	0.999997	D	5.82	86	27	0.239	83	0	0.000	8.39120978493669349e-08	0.630	---	104,81,23,0.221	73,73,0,0.000	5.768	9.38
chr2	226447694	226447694	G	A	exonic	NYAP2		nonsynonymous SNV	NYAP2:NM_020864:exon4:c.G1561A:p.G521S	Score=483;Name=lod=122		0.000679	0.0014			rs201097764	0												139	131	0.485	202	0	0.000	1.77977285370514341e-40	0.473	---	226,116,107,0.480	161,161,0,0.000	31.361	60
chr3	53837538	53837538	G	A	exonic	CACNA1D		nonsynonymous SNV	CACNA1D:NM_001128839:exon42:c.G5452A:p.E1818K,CACNA1D:NM_001128840:exon44:c.G5524A:p.E1842K,CACNA1D:NM_000720:exon45:c.G5584A:p.E1862K	Score=450;Name=lod=90							0.01	0.99887	C	0.91	T	0.208	P	0.229476	N	0.449176	N	4.09	65	39	0.375	92	0	0.000	3.39451556697879742e-13	0.538	---	87,53,34,0.391	73,73,0,0.000	10.591	60
chr3	77623682	77623682	C	T	exonic	ROBO2		synonymous SNV	ROBO2:NM_002942:exon14:c.C2004T:p.Y668Y	Score=595;Name=lod=349																			74	31	0.295	133	0	0.000	5.34353598973827911e-13	0.710	---	91,63,27,0.300	111,111,0,0.000	10.517	60
chr3	172166029	172166029	C	T	exonic	GHSR		nonsynonymous SNV	GHSR:NM_004122:exon1:c.G175A:p.A59T,GHSR:NM_198407:exon1:c.G175A:p.A59T	Score=694;Name=lod=883							0.84	0.999373	C	0.0	T	0.0	B	0.866989	N	1.2E-4	N	-0.301	150	77	0.339	241	0	0.000	2.09459356983883976e-28	0.481	---	201,132,69,0.343	207,207,0,0.000	24.334	60
chr3	178936091	178936091	G	A	exonic	PIK3CA		nonsynonymous SNV	PIK3CA:NM_006218:exon10:c.G1633A:p.E545K	Score=549;Name=lod=228	Score=0.979452;Name=chr22:17049389			ID=COSM763,COSM125370;OCCURENCE=25(ovary),301(breast),1(NS),4(penis),1(haematopoietic_and_lymphoid_tissue),18(stomach),2(kidney),2(soft_tissue),103(urinary_tract),2(pancreas),8(oesophagus),1(pituitary),14(skin),18(lung),24(cervix),5(thyroid),14(upper_aerodigestive_tract),288(large_intestine),11(central_nervous_system),1(biliary_tract),38(endometrium)	0.025	rs104886003	0	0.999704	C	0.958467	NA	0.997	D	1.0	D	0.999985	D	5.43	53	12	0.185	51	0	0.000	0.00105876807775502718	0.500	---	52,42,10,0.192	41,41,0,0.000	2.678	10.45
chr4	6303645	6303645	G	A	exonic	WFS1		nonsynonymous SNV	WFS1:NM_001145853:exon8:c.G2123A:p.R708H,WFS1:NM_006005:exon8:c.G2123A:p.R708H	Score=470;Name=lod=108		0.000077					0.01	0.999491	C	0.98	D	0.999	D	1.0	D	0.903412	D	5.03	157	80	0.338	245	0	0.000	6.0153994264759511e-29	0.425	---	213,143,69,0.325	213,213,0,0.000	23.732	60
chr4	8216238	8216238	C	T	exonic	SH3TC1		stopgain	SH3TC1:NM_018986:exon5:c.C412T:p.Q138X	Score=419;Name=lod=67							0.21	0.966583	C	0.901207	NA	0.729977	NA	0.999509	D	1.0	A	2.51	87	28	0.243	120	0	0.000	3.0196083796407707e-10	0.571	---	91,71,20,0.220	89,88,0,0.000	6.210	14.955
chr4	70512768	70512768	C	A	exonic	UGT2A1		stopgain	UGT2A1:NM_001252274:exon2:c.G595T:p.E199X,UGT2A1:NM_001252275:exon2:c.G595T:p.E199X,UGT2A1:NM_006798:exon2:c.G595T:p.E199X	Score=340;Name=lod=32							0.3	0.983443	C	0.862499	NA	0.635241	NA	0.991711	N	0.67568	NA	4.36	126	72	0.364	196	0	0.000	1.57994442706437429e-25	0.514	---	164,102,62,0.378	168,168,0,0.000	22.134	60
chr4	123855669	123855669	G	A	exonic	SPATA5		nonsynonymous SNV	SPATA5:NM_145207:exon5:c.G923A:p.R308K								1	0.763968	N	0.0	T	0.0	B	0.921631	N	0.003863	N	0.291	151	18	0.107	180	0	0.000	1.30997269446569391e-06	0.389	---	141,127,14,0.099	152,152,0,0.000	4.600	10.097
chr4	140188024	140188024	G	T	exonic	MGARP		nonsynonymous SNV	MGARP:NM_032623:exon4:c.C452A:p.A151E								0.06	0.139627	N	0.86	T	0.84	P	0.095487	N	0.009769	N	-6.07	123	61	0.332	192	0	0.000	2.59587802312910196e-22	0.459	---	159,105,54,0.340	160,160,0,0.000	18.702	60
chr4	145038046	145038046	C	A	exonic	GYPA		synonymous SNV	GYPA:NM_002099:exon5:c.G318T:p.T106T		Score=0.969379;Name=chr4:144796863																		16	9	0.360	33	0	0.000	0.000191848923143653137	0.444	---	19,13,6,0.316	28,28,0,0.000	2.597	7.939
chr4	148453781	148453781	C	T	exonic	EDNRA		synonymous SNV	EDNRA:NM_001957:exon4:c.C672T:p.F224F	Score=485;Name=lod=125		0.000077				rs142493349													105	42	0.286	138	0	0.000	3.1567808363288673e-14	0.405	---	126,90,33,0.268	118,116,0,0.000	10.525	60
chr4	170601323	170601323	C	T	exonic	CLCN3		stopgain	CLCN3:NM_001243374:exon2:c.C202T:p.R68X,CLCN3:NM_001243372:exon3:c.C283T:p.R95X,CLCN3:NM_001829:exon3:c.C283T:p.R95X,CLCN3:NM_173872:exon3:c.C283T:p.R95X		Score=0.903963;Name=chr9:15031342						1	0.051283	N	0.82811	NA	0.579227	NA	0.998289	N	1.0	A	-3.28	63	28	0.308	68	0	0.000	2.12312802290544964e-08	0.393	---	77,51,25,0.329	61,60,0,0.000	6.957	11.219
chr5	1034382	1034382	C	T	exonic	NKD2		synonymous SNV	NKD2:NM_001271082:exon6:c.C363T:p.D121D,NKD2:NM_033120:exon6:c.C363T:p.D121D	Score=521;Name=lod=174		0.000385				rs149056716													56	51	0.477	74	0	0.000	3.22983032155255351e-15	0.627	---	80,41,39,0.488	58,58,0,0.000	11.484	60
chr5	82786240	82786240	G	A	exonic	VCAN		nonsynonymous SNV	VCAN:NM_001126336:exon3:c.G394A:p.V132I,VCAN:NM_001164097:exon3:c.G394A:p.V132I,VCAN:NM_001164098:exon3:c.G394A:p.V132I,VCAN:NM_004385:exon3:c.G394A:p.V132I	Score=385;Name=lod=49		0.000077	0.0009			rs201515722	0	0.992888	C	0.99	D	0.97	D	0.999986	D	0.042723	N	4.24	207	72	0.258	251	0	0.000	1.07960773272621121e-22	0.417	---	234,175,59,0.252	201,200,0,0.000	17.473	12.926
chr5	112175621	112175621	C	T	exonic	APC		stopgain	APC:NM_001127511:exon14:c.C4276T:p.Q1426X,APC:NM_000038:exon16:c.C4330T:p.Q1444X,APC:NM_001127510:exon17:c.C4330T:p.Q1444X	Score=647;Name=lod=569				ID=COSM19021;OCCURENCE=1(pancreas),1(large_intestine)			0.29	0.999392	C	0.90382	NA	0.73546	NA	0.999999	D	1.0	D	5.82	48	161	0.770	186	0	0.000	1.49173979744014064e-67	0.522	---	176,38,138,0.784	151,151,0,0.000	56.328	60
chr5	113831648	113831648	C	T	exonic	KCNN2		synonymous SNV	KCNN2:NM_170775:exon6:c.C465T:p.F155F,KCNN2:NM_021614:exon8:c.C1509T:p.F503F	Score=628;Name=lod=477				ID=COSM167031,COSM167030;OCCURENCE=1(large_intestine)															55	95	0.633	133	0	0.000	3.37237518466223569e-36	0.768	---	134,47,85,0.644	110,110,0,0.000	30.601	60
chr5	127610317	127610317	C	T	exonic	FBN2		synonymous SNV	FBN2:NM_001999:exon60:c.G7653A:p.L2551L	Score=601;Name=lod=368																			74	11	0.129	93	0	0.000	0.000205373136425022908	0.545	---	65,55,10,0.154	64,63,0,0.000	2.869	5.931
chr5	140580258	140580258	G	A	exonic	PCDHB11		nonsynonymous SNV	PCDHB11:NM_018931:exon1:c.G911A:p.R304K								1	2.5E-5	N	0.0	T	0.0	B	0.594865	NA	5.5E-5	N	-4.51	130	42	0.244	137	0	0.000	3.17806478617251053e-12	0.429	---	161,121,40,0.248	119,119,0,0.000	10.354	60
chr5	140789315	140789315	G	A	exonic	PCDHGB6		nonsynonymous SNV	PCDHGB6:NM_018926:exon1:c.G1546A:p.A516T,PCDHGB6:NM_032100:exon1:c.G1546A:p.A516T	Score=519;Name=lod=172																			349	99	0.221	324	0	0.000	4.30931912909853209e-26	0.505	---	392,300,92,0.235	271,270,0,0.000	22.887	60
chr5	150901012	150901012	C	T	exonic	FAT2		synonymous SNV	FAT2:NM_001447:exon18:c.G11142A:p.V3714V	Score=325;Name=lod=28																			185	48	0.206	242	0	0.000	9.06411488225798065e-17	0.375	---	211,169,42,0.199	193,193,0,0.000	12.512	60
chr5	167835604	167835604	C	T	exonic	WWC1		synonymous SNV	WWC1:NM_001161661:exon7:c.C813T:p.F271F,WWC1:NM_001161662:exon7:c.C813T:p.F271F,WWC1:NM_015238:exon7:c.C813T:p.F271F																				120	110	0.478	215	0	0.000	1.40860600644145186e-39	0.482	---	175,89,86,0.491	169,169,0,0.000	31.251	60
chr5	169267807	169267807	G	A	exonic	DOCK2		nonsynonymous SNV	DOCK2:NM_004946:exon27:c.G2750A:p.R917Q	Score=517;Name=lod=169							0	0.999422	C	0.98	D	0.017	B	1.0	D	0.011659	N	4.93	101	34	0.252	133	0	0.000	1.09930560787928147e-11	0.559	---	111,82,28,0.255	105,105,0,0.000	8.899	13.827
chr5	170737292	170737292	G	A	exonic	TLX3		nonsynonymous SNV	TLX3:NM_021025:exon2:c.G560A:p.R187H	Score=707;Name=lod=997							0	0.997661	C	0.87	T	0.999	D	1.0	D	0.999889	D	3.86	213	83	0.280	222	0	0.000	2.45795458169968709e-23	0.554	---	254,182,72,0.283	192,192,0,0.000	19.703	60
chr5	180048658	180048658	G	A	exonic	FLT4		nonsynonymous SNV	FLT4:NM_002020:exon13:c.C1904T:p.T635M,FLT4:NM_182925:exon13:c.C1904T:p.T635M	Score=614;Name=lod=417							0.01	0.999139	C	0.99	D	0.762	P	0.907891	NA	0.272327	N	4.29	187	58	0.237	193	0	0.000	1.13738890403131895e-16	0.534	---	201,157,44,0.219	157,157,0,0.000	11.935	60
chr5	180048788	180048788	G	A	exonic	FLT4		nonsynonymous SNV	FLT4:NM_002020:exon13:c.C1774T:p.R592C,FLT4:NM_182925:exon13:c.C1774T:p.R592C	Score=581;Name=lod=307		0.000077					0	0.999139	C	1.0	D	0.999	D	1.0	NA	0.999995	D	4.29	105	107	0.505	153	0	0.000	1.29023876383198637e-32	0.439	---	183,90,93,0.508	132,132,0,0.000	27.827	60
chr6	87725471	87725471	C	T	exonic	HTR1E		nonsynonymous SNV	HTR1E:NM_000865:exon2:c.C419T:p.A140V	Score=366;Name=lod=41		0.000077			0.0082		0.01	0.952688	C	0.97	D	0.0	B	0.994124	U	0.001872	N	2.54	103	48	0.318	201	0	0.000	1.46209849984593951e-20	0.542	---	128,83,44,0.346	166,166,0,0.000	18.182	60
chr6	107956654	107956654	G	A	exonic	SOBP		nonsynonymous SNV	SOBP:NM_018013:exon6:c.G2606A:p.R869K	Score=754;Name=lod=1541							0	0.999502	C	0.940534	NA	0.956	D	0.985151	U	0.836271	D	5.03	155	58	0.272	219	0	0.000	1.60734908604331192e-20	0.534	---	180,126,52,0.292	169,169,0,0.000	16.912	60
chr6	112506487	112506487	C	A	exonic	LAMA4		nonsynonymous SNV	LAMA4:NM_001105206:exon9:c.G1029T:p.E343D,LAMA4:NM_001105207:exon9:c.G1008T:p.E336D,LAMA4:NM_002290:exon9:c.G1008T:p.E336D	Score=533;Name=lod=196							0.04	0.935883	N	1.0	D	0.871	D	0.99997	N	0.999403	D	2.51	44	13	0.228	50	0	0.000	0.000154749329518688821	0.538	---	47,37,10,0.213	43,43,0,0.000	2.906	12.597
chr6	158994465	158994465	C	T	exonic	TMEM181		nonsynonymous SNV	TMEM181:NM_020823:exon2:c.C433T:p.R145W	Score=505;Name=lod=151							0	0.964927	C	1.0	D	1.0	D	1.0	D	0.999997	D	3.06	74	32	0.302	104	0	0.000	3.03273158242299845e-11	0.531	---	87,62,25,0.287	78,78,0,0.000	7.762	12.604
chr6	159653105	159653105	C	T	exonic	FNDC1		stopgain	FNDC1:NM_032532:exon11:c.C1561T:p.R521X			0.000084					1												122	40	0.247	171	0	0.000	1.80945128755030568e-14	0.525	---	148,112,36,0.243	148,148,0,0.000	11.590	60
chr6	160328166	160328166	G	A	exonic	MAS1		nonsynonymous SNV	MAS1:NM_002377:exon1:c.G179A:p.R60Q	Score=468;Name=lod=106							0.48	0.999679	C	0.6	T	0.622	P	0.982636	N	0.321286	N	5.37	124	63	0.337	180	0	0.000	7.61979109102320176e-22	0.349	---	167,110,56,0.337	150,150,0,0.000	17.938	60
chr6	161513096	161513096	G	T	exonic	MAP3K4		nonsynonymous SNV	MAP3K4:NM_005922:exon13:c.G3190T:p.D1064Y,MAP3K4:NM_006724:exon13:c.G3190T:p.D1064Y	Score=660;Name=lod=639							0	0.999825	C	0.98	D	0.743	P	0.999969	D	1.0	D	5.82	44	29	0.397	107	0	0.000	7.22134887615074285e-14	0.621	---	59,38,21,0.356	88,87,1,0.011	8.244	60
chr7	1785037	1785037	C	T	exonic	ELFN1		nonsynonymous SNV	ELFN1:NM_001128636:exon2:c.C805T:p.R269C																				265	258	0.493	337	0	0.000	2.5452039370594998e-71	0.422	---	452,225,225,0.500	281,280,0,0.000	59.977	60
chr7	4900138	4900138	C	T	exonic	PAPOLB		nonsynonymous SNV	PAPOLB:NM_020144:exon1:c.G1304A:p.R435H								0.15												88	29	0.248	90	0	0.000	1.38213766987545509e-08	0.517	---	105,79,26,0.248	76,76,0,0.000	6.768	15.477
chr7	22767229	22767229	C	T	exonic	IL6		synonymous SNV	IL6:NM_000600:exon2:c.C186T:p.D62D								0.42												199	49	0.198	154	0	0.000	1.1442021731844266e-11	0.388	---	214,167,47,0.220	131,131,0,0.000	10.482	15.955
chr7	27150189	27150189	A	C	exonic	HOXA3		nonsynonymous SNV	HOXA3:NM_030661:exon2:c.T71G:p.F24C,HOXA3:NM_153631:exon3:c.T71G:p.F24C	Score=818;Name=lod=2808							0	0.998205	C	1.0	D	0.998	D	0.999999	D	0.990096	D	4.95	271	35	0.114	210	1	0.005	1.50525506937808014e-07	1.000	1.000	301,250,50,0.167	172,170,2,0.012	8.060	60
chr7	99704873	99704873	G	A	exonic	TAF6		nonsynonymous SNV	TAF6:NM_001190415:exon15:c.C2141T:p.P714L,TAF6:NM_005641:exon15:c.C2030T:p.P677L,TAF6:NM_139315:exon15:c.C2030T:p.P677L								0	0.891365	N	1.0	D	0.291	P	0.949796	N	0.277241	N	0.457	283	76	0.212	216	0	0.000	1.33628153059447684e-17	0.763	---	317,248,68,0.215	197,195,0,0.000	15.396	6.434
chr7	149462511	149462511	G	A	exonic	ZNF467		synonymous SNV	ZNF467:NM_207336:exon5:c.C1080T:p.C360C	Score=317;Name=lod=26																			300	123	0.291	264	1	0.004	1.99153171521803105e-28	0.447	1.000	377,265,112,0.297	233,232,1,0.004	24.897	60
chr8	11058599	11058599	G	A	exonic	XKR6		nonsynonymous SNV	XKR6:NM_173683:exon1:c.C250T:p.R84C	Score=750;Name=lod=1490							0.01	0.994692	C	0.98	D	0.504	P	0.947167	NA	0.642872	NA	3.27	37	42	0.532	64	0	0.000	2.70615399743696081e-14	0.762	---	68,30,36,0.545	50,50,0,0.000	11.329	60
chr8	21768200	21768200	C	T	exonic	DOK2		nonsynonymous SNV	DOK2:NM_003974:exon4:c.G602A:p.R201H	Score=508;Name=lod=155		0.001000	0.0009			rs113214277	0	0.996353	C	0.99	D	1.0	D	1.0	D	0.439236	N	4.16	257	54	0.174	218	0	0.000	6.51757676303367939e-14	0.500	---	263,215,48,0.183	180,180,0,0.000	11.451	60
chr8	42294702	42294702	G	A	exonic	SLC20A2		nonsynonymous SNV	SLC20A2:NM_001257180:exon8:c.C1328T:p.A443V,SLC20A2:NM_001257181:exon8:c.C1328T:p.A443V,SLC20A2:NM_006749:exon8:c.C1328T:p.A443V	Score=295;Name=lod=21							0.56	0.999645	C	0.71	T	0.985	D	1.0	D	0.997248	D	5.29	160	61	0.276	209	0	0.000	2.1756012562464502e-20	0.541	---	184,133,51,0.277	182,182,0,0.000	16.792	60
chr8	105261014	105261014	C	T	exonic	RIMS2		nonsynonymous SNV	RIMS2:NM_014677:exon19:c.C3004T:p.R1002C,RIMS2:NM_001100117:exon21:c.C3562T:p.R1188C	Score=444;Name=lod=85				ID=COSM1453909,COSM1453908,COSM1453910,COSM1453911;OCCURENCE=1(large_intestine)			0	0.998778	C	1.0	D	0.998	D	0.880297	NA	0.0	N	5.18	64	12	0.158	50	0	0.000	0.00324900719299002649	0.417	---	57,48,9,0.158	36,36,0,0.000	1.949	8.801
chr8	116426316	116426316	G	T	exonic	TRPS1		nonsynonymous SNV	TRPS1:NM_014112:exon7:c.C3820A:p.H1274N	Score=764;Name=lod=1696							0	0.999452	C	1.0	D	0.998	D	1.0	D	0.946034	D	4.97	209	55	0.208	219	0	0.000	4.1504632865018969e-16	0.509	---	216,172,44,0.204	175,175,0,0.000	12.262	60
chr9	846970	846970	G	A	exonic	DMRT1		nonsynonymous SNV	DMRT1:NM_021951:exon2:c.G365A:p.R122K	Score=587;Name=lod=325							0	0.998408	C	0.99	D	0.98	D	1.0	D	0.997783	D	4.14	104	31	0.230	114	0	0.000	1.07771043458573985e-09	0.677	---	115,87,28,0.243	97,96,0,0.000	8.067	13.89
chr9	19619586	19619586	G	A	exonic	SLC24A2		synonymous SNV	SLC24A2:NM_001193288:exon3:c.C1074T:p.A358A,SLC24A2:NM_020344:exon3:c.C1074T:p.A358A																				67	17	0.202	83	0	0.000	6.20710318499145461e-06	0.706	---	72,58,14,0.194	64,64,0,0.000	4.088	12.692
chr9	101216482	101216482	C	T	exonic	GABBR2		synonymous SNV	GABBR2:NM_005458:exon7:c.G1017A:p.E339E	Score=609;Name=lod=397																			48	44	0.478	60	0	0.000	1.59045092473023954e-12	0.182	---	83,44,39,0.470	52,52,0,0.000	10.016	60
chr9	110068669	110068669	G	A	exonic	RAD23B		nonsynonymous SNV	RAD23B:NM_001244713:exon4:c.G175A:p.V59M,RAD23B:NM_001244724:exon4:c.G22A:p.V8M,RAD23B:NM_002874:exon4:c.G238A:p.V80M	Score=435;Name=lod=78							0.02	0.99969	C	0.97	D	0.547817	NA	0.999764	D	0.012545	N	4.57	127	43	0.253	148	0	0.000	1.2544944486959507e-13	0.674	---	146,110,36,0.247	132,132,0,0.000	10.822	10.172
chr9	133577643	133577643	C	G	exonic	EXOSC2		stopgain	EXOSC2:NM_014285:exon7:c.C618G:p.Y206X	Score=499;Name=lod=142							0.29	0.855133	N	0.892297	NA	0.711726	NA	0.999955	D	1.0	D	0.904	146	54	0.270	142	0	0.000	1.3000326407565096e-14	0.315	---	170,121,49,0.288	129,128,0,0.000	13.392	60
chr9	139370379	139370379	A	T	exonic	SEC16A		nonsynonymous SNV	SEC16A:NM_001276418:exon2:c.T1689A:p.F563L,SEC16A:NM_014866:exon3:c.T1689A:p.F563L	Score=433;Name=lod=77							0												92	127	0.580	196	0	0.000	8.5645506492107037e-47	0.583	---	193,82,111,0.575	164,164,0,0.000	38.834	60
chr9	141015160	141015160	C	A	exonic	CACNA1B		nonsynonymous SNV	CACNA1B:NM_000718:exon45:c.C6316A:p.Q2106K,CACNA1B:NM_001243812:exon45:c.C6316A:p.Q2106K	Score=412;Name=lod=63							0.07												68	88	0.564	149	0	0.000	1.30239278730446869e-33	0.636	---	134,58,75,0.564	121,121,0,0.000	27.092	60
chr10	30317837	30317837	C	T	exonic	KIAA1462		nonsynonymous SNV	KIAA1462:NM_020848:exon3:c.G1240A:p.V414I					ID=COSM1212191;OCCURENCE=1(large_intestine)			0.48	0.14387	N	0.52	T	0.026	B	0.285051	N	7.8E-5	N	-0.933	142	47	0.249	204	0	0.000	3.84389578759110523e-17	0.574	---	170,126,42,0.250	173,169,0,0.000	13.975	60
chr10	101458420	101458420	G	A	exonic	ENTPD7		synonymous SNV	ENTPD7:NM_020354:exon10:c.G1140A:p.V380V																				108	58	0.349	216	0	0.000	1.13250091809905915e-24	0.500	---	142,89,53,0.373	179,179,0,0.000	21.657	60
chr10	126450956	126450956	C	G	exonic	METTL10		nonsynonymous SNV	METTL10:NM_212554:exon6:c.G788C:p.G263A	Score=272;Name=lod=17							0	0.946915	N	1.0	D	0.017	B	0.816072	NA	3.26E-4	N	0.799	20	13	0.394	31	0	0.000	5.93307369852175827e-05	0.308	---	26,16,10,0.385	26,25,0,0.000	3.173	8.48
chr11	1577987	1577987	C	T	exonic	DUSP8		nonsynonymous SNV	DUSP8:NM_004420:exon7:c.G1639A:p.A547T		Score=0.909206;Name=chr10:75491948						0.3	0.112712	N	0.82	T	0.0	B	0.618732	NA	0.173501	NA	-5.48	34	16	0.320	52	0	0.000	2.595890788636711e-06	0.062	---	47,32,15,0.319	40,40,0,0.000	4.522	3.466
chr11	11373503	11373503	G	A	exonic	CSNK2A3		synonymous SNV	CSNK2A3:NM_001256686:exon1:c.C1164T:p.G388G	Score=492;Name=lod=133																			95	41	0.301	143	0	0.000	4.19366397999779624e-15	0.829	---	133,92,41,0.308	137,135,0,0.000	14.075	12.763
chr11	18047220	18047220	C	T	exonic	TPH1		nonsynonymous SNV	TPH1:NM_004179:exon7:c.G832A:p.V278I	Score=563;Name=lod=260							0.04	0.998993	C	0.92	T	0.658	P	1.0	D	0.999754	D	5.36	95	59	0.383	162	0	0.000	3.20660167227207764e-22	0.441	---	121,79,42,0.347	131,131,0,0.000	15.330	60
chr11	34107716	34107716	C	T	exonic	CAPRIN1		stopgain	CAPRIN1:NM_005898:exon10:c.C1072T:p.R358X,CAPRIN1:NM_203364:exon10:c.C1072T:p.R358X	Score=643;Name=lod=545							0.91	0.945302	N	0.899499	NA	0.726562	NA	0.999988	D	1.0	A	3.35	66	28	0.298	95	0	0.000	2.9760999053282159e-10	0.357	---	80,52,28,0.350	78,78,0,0.000	9.357	13.913
chr11	59132749	59132749	G	T	exonic	OR5AN1		nonsynonymous SNV	OR5AN1:NM_001004729:exon1:c.G818T:p.R273I								0	0.988225	C	1.0	D	0.999	D	0.996506	N	0.355616	N	2.51	59	30	0.337	98	0	0.000	9.73722372919172113e-12	0.400	---	70,47,23,0.329	81,81,0,0.000	8.684	60
chr11	62933697	62933697	A	C	exonic	SLC22A25		synonymous SNV	SLC22A25:NM_199352:exon7:c.T1104G:p.T368T																				168	80	0.323	244	0	0.000	9.79448056160298925e-28	0.450	---	212,146,66,0.311	203,203,0,0.000	21.799	60
chr11	72407634	72407634	T	G	exonic	ARAP1		nonsynonymous SNV	ARAP1:NM_001135190:exon20:c.A2314C:p.N772H,ARAP1:NM_015242:exon21:c.A2497C:p.N833H,ARAP1:NM_001040118:exon23:c.A3232C:p.N1078H	Score=412;Name=lod=63							0	0.994112	C	0.92	T	0.812	P	1.0	D	0.729692	D	4.16	98	20	0.169	108	0	0.000	1.11825077375133358e-06	0.000	---	127,94,32,0.254	88,88,0,0.000	7.886	9.752
chr11	78369783	78369783	C	T	exonic	TENM4		nonsynonymous SNV	TENM4:NM_001098816:exon34:c.G7630A:p.G2544S	Score=633;Name=lod=498							0.53												137	63	0.315	193	0	0.000	1.15096680042031619e-21	0.429	---	156,106,50,0.321	160,160,0,0.000	17.391	60
chr11	86209157	86209157	C	A	exonic	ME3		nonsynonymous SNV	ME3:NM_001014811:exon5:c.G553T:p.V185L,ME3:NM_001161586:exon6:c.G553T:p.V185L,ME3:NM_006680:exon6:c.G553T:p.V185L	Score=608;Name=lod=393							0	0.998914	C	1.0	D	0.967	D	1.0	D	0.999971	D	5.28	97	43	0.307	143	0	0.000	1.51356960975894489e-15	0.326	---	121,85,36,0.298	124,124,0,0.000	12.377	60
chr11	92532328	92532328	A	G	exonic	FAT3		nonsynonymous SNV	FAT3:NM_001008781:exon9:c.A6149G:p.Y2050C	Score=686;Name=lod=820							0.01												122	76	0.384	236	0	0.000	7.7026901095618226e-31	0.539	---	172,105,67,0.390	195,195,0,0.000	25.747	60
chr11	110134733	110134733	T	C	exonic	RDX		nonsynonymous SNV	RDX:NM_001260496:exon4:c.A323G:p.E108G,RDX:NM_001260492:exon5:c.A419G:p.E140G,RDX:NM_001260493:exon5:c.A419G:p.E140G,RDX:NM_002906:exon5:c.A419G:p.E140G	Score=684;Name=lod=804							0.05	0.997545	C	0.93	T	0.0010	B	1.0	D	0.95819	D	5.09	53	25	0.321	95	0	0.000	1.83379004434409445e-10	0.560	---	65,43,22,0.338	75,74,1,0.013	7.148	12.779
chr12	4919540	4919540	C	T	exonic	KCNA6		synonymous SNV	KCNA6:NM_002235:exon1:c.C333T:p.N111N	Score=579;Name=lod=300																			201	107	0.347	281	0	0.000	1.77292617304595608e-35	0.533	---	249,164,84,0.339	241,241,0,0.000	28.392	60
chr12	21689974	21689974	T	A	exonic	GYS2		nonsynonymous SNV	GYS2:NM_021957:exon16:c.A2026T:p.R676W	Score=463;Name=lod=102							0	0.997601	C	0.98	D	0.985	D	1.0	D	0.993607	D	4.58	78	20	0.204	110	0	0.000	9.30711779603593561e-08	0.650	---	80,62,18,0.225	83,83,0,0.000	6.039	9.954
chr12	25398284	25398284	C	T	exonic	KRAS		nonsynonymous SNV	KRAS:NM_004985:exon2:c.G35A:p.G12D,KRAS:NM_033360:exon2:c.G35A:p.G12D	Score=706;Name=lod=982				ID=COSM1135366,COSM521;OCCURENCE=1(salivary_gland),248(ovary),8(breast),77(stomach),107(haematopoietic_and_lymphoid_tissue),1(kidney),15(urinary_tract),20(soft_tissue),1970(pancreas),1(peritoneum),10(liver),10(oesophagus),10(gastrointestinal_tract_(site_indeterminate)),12(skin),19(prostate),615(lung),36(thyroid),15(cervix),24(upper_aerodigestive_tract),2(testis),3(eye),5503(large_intestine),1(central_nervous_system),41(small_intestine),266(biliary_tract),148(endometrium)	0.0082	rs121913529	0	0.998873	C	1.0	D	0.657	P	1.0	D	0.999991	D	5.24	83	28	0.252	130	0	0.000	4.59547834450090901e-11	0.500	---	92,67,25,0.272	99,99,0,0.000	8.780	60
chr12	53591615	53591615	C	T	exonic	ITGB7		nonsynonymous SNV	ITGB7:NM_000889:exon4:c.G322A:p.D108N	Score=349;Name=lod=35							0.89	0.964193	C	0.15	T	0.01	B	0.874812	NA	0.14834	N	2.91	115	52	0.311	142	0	0.000	1.8784912678468313e-16	0.423	---	141,98,43,0.305	120,120,0,0.000	12.795	11.535
chr13	36158112	36158112	A	C	exonic	NBEA		synonymous SNV	NBEA:NM_001204197:exon6:c.A492C:p.P164P,NBEA:NM_015678:exon46:c.A7113C:p.P2371P	Score=526;Name=lod=183																			115	13	0.102	116	0	0.000	0.000211619464500134855	1.000	---	124,97,27,0.218	89,88,1,0.011	5.684	12.114
chr13	38266375	38266375	G	T	exonic	TRPC4		nonsynonymous SNV	TRPC4:NM_001135958:exon3:c.C476A:p.T159K,TRPC4:NM_001135955:exon4:c.C995A:p.T332K,TRPC4:NM_001135956:exon4:c.C995A:p.T332K,TRPC4:NM_001135957:exon4:c.C995A:p.T332K,TRPC4:NM_003306:exon4:c.C995A:p.T332K,TRPC4:NM_016179:exon4:c.C995A:p.T332K	Score=461;Name=lod=100							0.07	0.999528	C	0.72	T	0.923	D	1.0	D	0.753709	D	5.07	122	110	0.474	264	0	0.000	6.39879577076037881e-45	0.455	---	191,100,91,0.476	213,213,0,0.000	36.110	60
chr13	111358416	111358416	C	G	exonic	CARS2		nonsynonymous SNV	CARS2:NM_024537:exon1:c.G25C:p.G9R								0	0.005794	N	1.0	D	0.263179	NA	4.7E-5	N	0.025781	N	-6.52	103	35	0.254	109	0	0.000	1.78028042136259852e-10	0.257	---	125,93,32,0.256	90,90,0,0.000	8.300	11.856
chr13	111371617	111371617	C	T	exonic	ING1		nonsynonymous SNV	ING1:NM_001267728:exon2:c.C127T:p.R43C,ING1:NM_005537:exon2:c.C607T:p.R203C,ING1:NM_198217:exon2:c.C46T:p.R16C,ING1:NM_198219:exon2:c.C178T:p.R60C	Score=374;Name=lod=44							0	0.998218	C	1.0	D	0.987	D	0.999994	D	0.99622	D	4.81	143	66	0.316	174	0	0.000	1.81045077286667023e-20	0.621	---	177,123,54,0.305	149,149,0,0.000	16.207	60
chr15	65369962	65369962	C	T	exonic	KBTBD13		nonsynonymous SNV	KBTBD13:NM_001101362:exon1:c.C809T:p.T270M								0.23												147	64	0.303	206	0	0.000	5.04259726951627042e-22	0.500	---	188,126,62,0.330	181,181,0,0.000	20.715	60
chr15	75116699	75116699	C	A	exonic	LMAN1L		nonsynonymous SNV	LMAN1L:NM_021819:exon13:c.C1331A:p.A444E								0.04	0.791085	N	0.69	T	0.243	P	0.38891	N	0.066541	N	-0.00917	55	29	0.345	123	0	0.000	1.40409163064120646e-13	0.759	---	73,47,26,0.356	98,98,0,0.000	10.950	60
chr15	80460437	80460437	G	A	exonic	FAH		nonsynonymous SNV	FAH:NM_000137:exon6:c.G499A:p.V167M	Score=391;Name=lod=52		0.000077				rs146477982	0.03	0.98844	C	1.0	D	0.025	B	0.999952	D	0.99995	D	3.67	38	66	0.635	104	0	0.000	4.40256424080231339e-27	0.682	---	88,31,57,0.648	87,87,0,0.000	22.896	60
chr16	1035247	1035247	G	A	exonic	SOX8		nonsynonymous SNV	SOX8:NM_014587:exon3:c.G1202A:p.G401D	Score=489;Name=lod=129							0.02	0.998977	C	0.96	D	0.135	B	0.999809	D	0.730824	D	3.96	125	90	0.419	197	0	0.000	6.30483177715971275e-31	0.478	---	186,111,75,0.403	160,160,0,0.000	23.930	60
chr16	1717388	1717388	C	A	exonic	CRAMP1L		nonsynonymous SNV	CRAMP1L:NM_020825:exon16:c.C3089A:p.A1030E								0												50	14	0.219	68	0	0.000	1.74770963965892337e-05	0.500	---	50,37,13,0.260	52,52,0,0.000	4.421	8.838
chr16	3139972	3139972	C	T	exonic	ZSCAN10		nonsynonymous SNV	ZSCAN10:NM_032805:exon5:c.G1298A:p.R433H	Score=389;Name=lod=51							0.16	0.974825	C	0.97	D	0.075	B	0.998601	N	0.247917	N	2.01	178	97	0.353	257	0	0.000	7.42443246854383967e-33	0.505	---	236,154,82,0.347	212,212,0,0.000	26.284	60
chr16	4927080	4927080	C	T	exonic	UBN1		nonsynonymous SNV	UBN1:NM_016936:exon15:c.C3233T:p.A1078V,UBN1:NM_001079514:exon16:c.C3233T:p.A1078V	Score=383;Name=lod=48							0	0.99922	C	1.0	D	0.891	D	0.999606	D	0.138574	N	5.06	130	74	0.363	209	0	0.000	5.71651155429839778e-27	0.486	---	176,111,65,0.369	170,170,0,0.000	22.174	60
chr16	9857538	9857538	C	T	exonic	GRIN2A		nonsynonymous SNV	GRIN2A:NM_001134407:exon13:c.G3863A:p.R1288H,GRIN2A:NM_000833:exon14:c.G3863A:p.R1288H	Score=570;Name=lod=276				ID=COSM1380653;OCCURENCE=1(large_intestine)			0	0.998883	C	1.0	D	0.999	D	1.0	D	0.993719	D	5.26	98	41	0.295	137	0	0.000	2.91498878354882299e-14	0.561	---	122,85,36,0.298	114,114,0,0.000	11.640	60
chr16	20994145	20994145	C	T	exonic	DNAH3		nonsynonymous SNV	DNAH3:NM_017539:exon49:c.G7757A:p.C2586Y	Score=572;Name=lod=282		0.000154				rs138171276	0	0.999009	C	1.0	D	0.999	D	0.999949	D	0.995765	D	5.37	97	26	0.211	117	0	0.000	8.25524034545605129e-09	0.615	---	96,73,23,0.240	87,87,0,0.000	7.032	6.784
chr16	30094767	30094767	A	G	exonic	PPP4C		nonsynonymous SNV	PPP4C:NM_002720:exon6:c.A356G:p.Q119R	Score=600;Name=lod=365							0	0.998974	C	1.0	D	0.988	D	1.0	D	0.999925	D	5.48	128	44	0.256	187	0	0.000	3.25569116208011257e-16	0.705	---	152,113,39,0.257	149,148,0,0.000	12.602	60
chr16	46702840	46702840	A	G	splicing	VPS35	NM_018206:exon14:c.1647+2T>C			Score=585;Name=lod=318																			85	56	0.397	158	0	0.000	3.80760424371487053e-22	0.607	---	115,71,44,0.383	131,131,0,0.000	16.886	60
chr16	67576090	67576090	C	T	exonic	FAM65A		synonymous SNV	FAM65A:NM_001193522:exon13:c.C1413T:p.A471A,FAM65A:NM_001193523:exon13:c.C1461T:p.A487A,FAM65A:NM_001193524:exon13:c.C1443T:p.A481A,FAM65A:NM_024519:exon13:c.C1401T:p.A467A			0.000077				rs138621415													163	75	0.315	213	0	0.000	2.78239677881946577e-24	0.533	---	215,143,71,0.332	186,186,0,0.000	22.109	60
chr17	7826808	7826808	G	A	exonic	KCNAB3		nonsynonymous SNV	KCNAB3:NM_004732:exon13:c.C1103T:p.A368V								0.09	0.909641	N	0.91	T	0.0	B	0.966051	N	0.806689	D	-0.555	84	44	0.344	126	0	0.000	1.33888096598079619e-15	0.636	---	110,72,38,0.345	99,99,0,0.000	12.023	60
chr17	7948227	7948227	C	T	exonic	ALOX15B		nonsynonymous SNV	ALOX15B:NM_001039130:exon6:c.C757T:p.R253C,ALOX15B:NM_001039131:exon6:c.C757T:p.R253C,ALOX15B:NM_001141:exon6:c.C757T:p.R253C			0.000077				rs147889634	0.11	0.994299	C	0.9	T	0.302	P	0.993446	N	0.996848	D	1.11	129	43	0.250	162	0	0.000	2.29413915169108947e-14	0.465	---	135,98,37,0.274	128,128,0,0.000	11.887	60
chr17	25910073	25910073	C	T	exonic	KSR1		nonsynonymous SNV	KSR1:NM_014238:exon5:c.C511T:p.R171W	Score=610;Name=lod=402							0												84	36	0.300	145	0	0.000	1.41285098878877764e-14	0.111	---	116,76,39,0.339	135,135,0,0.000	14.970	12.065
chr17	34340291	34340291	C	T	exonic	CCL23		synonymous SNV	CCL23:NM_005064:exon4:c.G360A:p.Q120Q,CCL23:NM_145898:exon4:c.G309A:p.Q103Q																				53	12	0.185	80	0	0.000	3.56543102002020701e-05	0.583	---	58,48,9,0.158	60,60,0,0.000	2.963	6.616
chr17	39262185	39262185	G	A	exonic	KRTAP4-9		nonsynonymous SNV	KRTAP4-9:NM_001146041:exon1:c.G545A:p.R182Q		Score=0.945624;Name=chr17:39237388						0.23												423	123	0.225	614	0	0.000	1.5402149589618634e-44	0.439	---	443,331,111,0.251	484,484,0,0.000	39.240	14.214
chr17	39925282	39925282	G	A	exonic	JUP		nonsynonymous SNV	JUP:NM_002230:exon4:c.C646T:p.R216W,JUP:NM_021991:exon4:c.C646T:p.R216W	Score=588;Name=lod=328							0	0.999762	C	1.0	D	0.999	D	1.0	D	0.998087	D	5.59	99	39	0.283	125	0	0.000	9.99228225466815075e-13	0.641	---	122,89,33,0.270	107,107,0,0.000	9.919	60
chr17	47785181	47785181	G	A	exonic	SLC35B1		synonymous SNV	SLC35B1:NM_005827:exon1:c.C15T:p.S5S	Score=664;Name=lod=667																			159	61	0.277	198	0	0.000	1.04510151573568733e-19	0.426	---	165,118,47,0.285	147,147,0,0.000	14.525	12.064
chr17	74382382	74382382	G	A	exonic	SPHK1		nonsynonymous SNV	SPHK1:NM_001142602:exon3:c.G244A:p.G82R,SPHK1:NM_001142601:exon4:c.G244A:p.G82R,SPHK1:NM_021972:exon4:c.G286A:p.G96R,SPHK1:NM_182965:exon4:c.G502A:p.G168R	Score=471;Name=lod=109							0	0.98581	C	1.0	D	0.999	D	1.0	D	0.99993	D	3.32	144	66	0.314	185	0	0.000	3.19601032157113e-21	0.485	---	177,121,56,0.316	150,150,0,0.000	16.979	60
chr18	31319372	31319372	T	G	exonic	ASXL3		synonymous SNV	ASXL3:NM_030632:exon11:c.T2004G:p.T668T	Score=547;Name=lod=222																			60	63	0.512	189	0	0.000	8.98002381680132483e-32	0.476	---	105,51,54,0.514	164,164,0,0.000	26.882	60
chr18	48604788	48604788	A	G	exonic	SMAD4		nonsynonymous SNV	SMAD4:NM_005359:exon12:c.A1610G:p.D537G	Score=588;Name=lod=326				ID=COSM168813;OCCURENCE=1(large_intestine)			0	0.999208	C	1.0	D	0.999	D	1.0	D	0.999984	D	5.72	23	31	0.574	106	0	0.000	9.42143717225362387e-19	0.355	---	43,18,25,0.581	87,87,0,0.000	14.802	60
chr18	77171121	77171121	G	A	exonic	NFATC1		synonymous SNV	NFATC1:NM_006162:exon2:c.G846A:p.S282S,NFATC1:NM_172387:exon2:c.G807A:p.S269S,NFATC1:NM_172389:exon2:c.G807A:p.S269S,NFATC1:NM_172390:exon2:c.G846A:p.S282S					ID=COSM1389851;OCCURENCE=1(large_intestine)															80	99	0.553	279	1	0.004	3.34475039509798196e-49	0.535	1.000	163,70,92,0.568	247,246,1,0.004	44.586	60
chr19	929574	929574	C	T	exonic	ARID3A		nonsynonymous SNV	ARID3A:NM_005224:exon2:c.C46T:p.R16W	Score=560;Name=lod=251							0	0.238765	N	1.0	D	0.697005	NA	0.996806	U	0.998963	D	-0.747	141	86	0.379	196	0	0.000	5.43069487354936198e-28	0.570	---	186,119,65,0.353	158,158,0,0.000	20.271	7.218
chr19	4491786	4491786	C	T	exonic	HDGFRP2		nonsynonymous SNV	HDGFRP2:NM_001001520:exon6:c.C632T:p.A211V,HDGFRP2:NM_032631:exon6:c.C632T:p.A211V			0.000166					0.4	0.82901	N	0.0	T	0.0	B	0.887169	N	4.27E-4	N	3.01	63	20	0.241	96	0	0.000	5.25418186513305375e-08	0.350	---	74,54,20,0.270	87,87,0,0.000	7.446	13.117
chr19	4544383	4544383	G	A	exonic	SEMA6B		nonsynonymous SNV	SEMA6B:NM_032108:exon17:c.C1897T:p.R633C	Score=634;Name=lod=502							0.02	0.993439	C	0.98	D	0.998	D	0.123404	U	0.074597	N	2.58	121	64	0.346	184	0	0.000	1.43799890829068044e-22	0.641	---	158,102,56,0.354	157,157,0,0.000	19.144	60
chr19	8670150	8670150	G	A	exonic	ADAMTS10		nonsynonymous SNV	ADAMTS10:NM_030957:exon4:c.C182T:p.P61L	Score=429;Name=lod=74							0.57	0.945679	N	0.61	T	0.013	B	0.730158	N	8.05E-4	N	2.09	123	64	0.342	222	0	0.000	1.52313499170164971e-25	0.375	---	161,105,56,0.348	177,177,0,0.000	20.676	60
chr19	9045927	9045927	G	T	exonic	MUC16		nonsynonymous SNV	MUC16:NM_024690:exon5:c.C35704A:p.L11902I								0.27												96	58	0.377	187	0	0.000	6.73738235436763237e-24	0.534	---	137,85,52,0.380	157,156,1,0.006	18.479	60
chr19	10397776	10397776	C	T	exonic	ICAM4		nonsynonymous SNV	ICAM4:NM_001039132:exon1:c.C88T:p.R30W,ICAM4:NM_001544:exon1:c.C88T:p.R30W,ICAM4:NM_022377:exon1:c.C88T:p.R30W								0	0.101384	N	1.0	D	0.854	D	0.009513	N	0.0306	N	-0.984	111	59	0.347	110	0	0.000	1.9766430267197308e-15	0.542	---	143,93,50,0.350	92,92,0,0.000	12.285	15.955
chr19	36351519	36351519	T	G	exonic	KIRREL2		nonsynonymous SNV	KIRREL2:NM_199179:exon6:c.T728G:p.V243G,KIRREL2:NM_032123:exon7:c.T878G:p.V293G,KIRREL2:NM_199180:exon7:c.T878G:p.V293G	Score=562;Name=lod=256							0	0.99545	C	1.0	D	0.616	P	0.982291	N	0.344292	N	3.05	133	67	0.335	186	0	0.000	1.50912834670133854e-22	0.537	---	170,112,56,0.333	151,150,0,0.000	17.774	8.347
chr19	36365557	36365557	C	T	exonic	APLP1		nonsynonymous SNV	APLP1:NM_001024807:exon9:c.C1208T:p.P403L,APLP1:NM_005166:exon9:c.C1208T:p.P403L					ID=COSM1245188;OCCURENCE=1(oesophagus)			0.02	0.946915	N	1.0	D	0.0	B	0.836402	N	0.999965	D	1.79	160	92	0.365	241	0	0.000	1.31474043670666209e-31	0.511	---	224,140,83,0.372	208,207,0,0.000	27.603	60
chr19	42599461	42599461	G	A	exonic	POU2F2		nonsynonymous SNV	POU2F2:NM_001207025:exon11:c.C1108T:p.P370S,POU2F2:NM_001207026:exon11:c.C1108T:p.P370S,POU2F2:NM_001247994:exon11:c.C1060T:p.P354S,POU2F2:NM_002698:exon11:c.C1060T:p.P354S	Score=696;Name=lod=901							0.47	0.998868	C	0.81	T	0.73	P	0.947373	N	0.913488	D	3.32	142	70	0.330	238	0	0.000	9.56385736991302152e-27	0.671	---	188,126,62,0.330	199,198,0,0.000	22.062	60
chr19	45644679	45644679	G	T	exonic	PPP1R37		nonsynonymous SNV	PPP1R37:NM_019121:exon5:c.G547T:p.A183S	Score=289;Name=lod=20							0.06												111	48	0.302	167	0	0.000	1.47971874319932102e-17	0.583	---	134,93,41,0.306	138,138,0,0.000	14.202	60
chr19	52249323	52249323	G	A	exonic	FPR1		nonsynonymous SNV	FPR1:NM_002029:exon2:c.C925T:p.R309W,FPR1:NM_001193306:exon3:c.C925T:p.R309W	Score=483;Name=lod=123							0	0.962158	C	1.0	D	0.999	D	0.999837	D	0.56011	D	0.974	85	39	0.315	154	0	0.000	4.22075942020871611e-16	0.513	---	108,76,32,0.296	122,122,0,0.000	11.746	60
chr20	25493613	25493613	C	T	exonic	NINL		nonsynonymous SNV	NINL:NM_025176:exon4:c.G307A:p.V103M	Score=333;Name=lod=30							0.25	0.830578	N	0.79	T	0.036	B	0.999611	N	0.184067	N	0.475	93	84	0.475	143	0	0.000	1.89277155046677188e-27	0.274	---	156,79,76,0.490	121,121,0,0.000	23.714	60
chr20	37272481	37272481	G	A	exonic	ARHGAP40		synonymous SNV	ARHGAP40:NM_001164431:exon11:c.G1494A:p.K498K	Score=621;Name=lod=444																			134	133	0.498	217	0	0.000	7.65678017654783218e-44	0.504	---	216,107,109,0.505	173,172,0,0.000	34.789	60
chr20	39831472	39831472	A	G	exonic	ZHX3		synonymous SNV	ZHX3:NM_015035:exon3:c.T2085C:p.D695D																				228	70	0.235	261	0	0.000	1.15088365469707468e-21	0.500	---	267,206,60,0.226	214,211,0,0.000	16.490	60
chr20	42788824	42788824	C	T	exonic	JPH2		synonymous SNV	JPH2:NM_020433:exon2:c.G603A:p.A201A	Score=519;Name=lod=171																			75	66	0.468	110	0	0.000	4.52016411241272481e-21	0.576	---	126,66,60,0.476	100,100,0,0.000	18.820	60
chr21	40596347	40596347	T	C	exonic	BRWD1		synonymous SNV	BRWD1:NM_018963:exon29:c.A3369G:p.P1123P,BRWD1:NM_033656:exon29:c.A3369G:p.P1123P	Score=601;Name=lod=370																			45	21	0.318	68	0	0.000	5.0945355353731589e-08	0.476	---	49,34,15,0.306	50,49,0,0.000	4.763	7.713
chr21	44480559	44480559	C	A	exonic	CBS		synonymous SNV	CBS:NM_000071:exon12:c.G1137T:p.R379R,CBS:NM_001178008:exon12:c.G1137T:p.R379R,CBS:NM_001178009:exon12:c.G1137T:p.R379R	Score=472;Name=lod=111																			52	34	0.395	105	0	0.000	1.90551250206097941e-14	0.471	---	69,44,25,0.362	78,78,0,0.000	9.434	60
chr21	47360027	47360027	C	T	exonic	PCBP3		synonymous SNV	PCBP3:NM_001130141:exon12:c.C915T:p.N305N,PCBP3:NM_020528:exon13:c.C993T:p.N331N			0.000157	0.0005	ID=COSM1414527,COSM1414528;OCCURENCE=1(large_intestine)		rs114536865													102	13	0.113	112	0	0.000	0.000172265746209408036	0.462	---	89,78,11,0.124	85,84,0,0.000	3.135	7.743
chr21	47845817	47845817	G	A	exonic	PCNT		nonsynonymous SNV	PCNT:NM_006031:exon33:c.G7252A:p.G2418S							rs201389292	0.12	0.942592	N	0.84	T	0.078	B	0.848985	NA	0.172504	N	1.85	65	62	0.488	147	0	0.000	4.70714232213839227e-26	0.581	---	105,54,51,0.486	115,114,0,0.000	19.943	60
chr22	26879908	26879908	C	T	exonic	SRRD		nonsynonymous SNV	SRRD:NM_001013694:exon1:c.C52T:p.R18W								0	0.885457	N	1.0	D	0.554358	NA	0.999608	D	0.028162	N	0.322	146	84	0.365	171	0	0.000	2.6393019087684947e-24	0.631	---	175,106,68,0.391	137,137,0,0.000	20.161	11.113
chr22	42522646	42522646	G	T	exonic	CYP2D6		nonsynonymous SNV	CYP2D6:NM_001025161:exon8:c.C1271A:p.P424H,CYP2D6:NM_000106:exon9:c.C1424A:p.P475H	Score=265;Name=lod=16	Score=0.964262;Name=chr22:42531352						0	0.998849	C	1.0	D	0.999	D	0.999999	D	0.962093	D	4.4	115	62	0.350	210	0	0.000	7.6664953555982662e-25	0.452	---	145,95,49,0.340	163,163,0,0.000	18.381	15.654
chrX	8998345	8998345	T	C	exonic	FAM9B		nonsynonymous SNV	FAM9B:NM_205849:exon4:c.A238G:p.K80E		Score=0.901004;Name=chrX:8752591						0.13	0.066676	N	0.26	T	0.0010	B	0.603035	NA	5.0E-6	N	-0.835	97	25	0.205	99	0	0.000	1.15157747545338853e-07	0.600	---	100,77,23,0.230	88,88,0,0.000	6.873	10.73
chrX	9656135	9656135	C	T	exonic	TBL1X		nonsynonymous SNV	TBL1X:NM_001139467:exon6:c.C283T:p.R95W,TBL1X:NM_001139466:exon7:c.C436T:p.R146W,TBL1X:NM_001139468:exon7:c.C283T:p.R95W,TBL1X:NM_005647:exon7:c.C436T:p.R146W	Score=495;Name=lod=137							0	0.947884	N	1.0	D	0.992	D	1.0	D	0.973256	D	3.0	272	85	0.238	265	0	0.000	2.59742586157011825e-23	0.471	---	307,228,77,0.252	219,219,0,0.000	19.929	60
chrX	12905638	12905638	G	T	exonic	TLR7		nonsynonymous SNV	TLR7:NM_016562:exon3:c.G2011T:p.D671Y	Score=361;Name=lod=39							0.37	0.781239	N	0.97	D	0.688	P	0.710231	N	0.075225	N	1.11	116	25	0.177	111	0	0.000	1.8629360902119197e-07	0.440	---	125,100,25,0.200	96,96,0,0.000	6.506	11.61
chrX	16859850	16859850	G	A	exonic	TXLNG		synonymous SNV	TXLNG:NM_001168683:exon8:c.G1152A:p.P384P,TXLNG:NM_018360:exon10:c.G1548A:p.P516P																				199	78	0.282	224	0	0.000	2.96101102556807848e-23	0.397	---	232,168,64,0.276	182,181,0,0.000	17.945	60
chrX	46433646	46433646	G	A	exonic	CHST7		nonsynonymous SNV	CHST7:NM_019886:exon1:c.G280A:p.G94R	Score=243;Name=lod=13							0.54	0.926723	N	0.9	T	0.0	B	0.859704	N	0.088966	N	-0.663	192	55	0.223	192	0	0.000	1.31415071318476499e-15	0.509	---	210,163,47,0.224	162,162,0,0.000	12.743	60
chrX	47069442	47069442	G	A	exonic	UBA1		nonsynonymous SNV	UBA1:NM_003334:exon18:c.G2119A:p.V707M,UBA1:NM_153280:exon18:c.G2119A:p.V707M	Score=646;Name=lod=564							0	0.999482	C	1.0	D	0.774	P	0.999998	D	0.997623	D	3.92	194	52	0.211	183	1	0.005	6.52195155594012056e-13	0.519	0.000	196,156,40,0.204	147,146,1,0.007	9.060	60
chrX	47511288	47511288	T	C	exonic	UXT		nonsynonymous SNV	UXT:NM_153477:exon6:c.A463G:p.R155G,UXT:NM_004182:exon7:c.A427G:p.R143G	Score=422;Name=lod=69							0	0.960192	C	0.98	D	0.668763	NA	0.999995	N	0.540608	D	2.25	153	41	0.211	150	0	0.000	1.07425960267196143e-11	0.512	---	151,120,31,0.205	117,117,0,0.000	8.305	7.925
chrX	48935556	48935556	C	T	exonic	WDR45		nonsynonymous SNV	WDR45:NM_001029896:exon3:c.G70A:p.A24T,WDR45:NM_007075:exon4:c.G70A:p.A24T	Score=617;Name=lod=429			0			rs187104097	0.01	0.996973	C	1.0	D	0.303	P	1.0	D	0.627962	NA	4.0	186	41	0.181	149	0	0.000	2.3172318672642234e-10	0.439	---	201,164,37,0.184	134,134,0,0.000	8.634	9.946
chrX	63411366	63411366	G	A	exonic	AMER1		stopgain	AMER1:NM_152424:exon2:c.C1801T:p.R601X					ID=COSM193863,COSM193862;OCCURENCE=1(large_intestine)			1	0.832131	N	0.900124	NA	0.602334	NA	0.400649	N	1.0	A	-0.856	165	202	0.550	277	0	0.000	6.74499303378784232e-65	0.510	---	315,140,174,0.554	244,244,0,0.000	56.554	60
chrX	99662276	99662276	G	A	exonic	PCDH19		synonymous SNV	PCDH19:NM_001105243:exon1:c.C1320T:p.T440T,PCDH19:NM_001184880:exon1:c.C1320T:p.T440T,PCDH19:NM_020766:exon1:c.C1320T:p.T440T					ID=COSM1126591;OCCURENCE=1(endometrium)															197	79	0.286	227	0	0.000	7.83956405778596566e-24	0.468	---	237,169,68,0.287	197,197,0,0.000	20.061	60
chrX	99848987	99848987	C	T	exonic	TNMD		synonymous SNV	TNMD:NM_022144:exon3:c.C276T:p.S92S	Score=585;Name=lod=318																			121	39	0.244	91	0	0.000	5.7180406287646974e-09	0.538	---	128,98,29,0.228	77,77,0,0.000	6.415	60
chrX	102332664	102332664	C	T	exonic	NXF3		nonsynonymous SNV	NXF3:NM_022052:exon18:c.G1462A:p.V488M	Score=383;Name=lod=48							0	6.92E-4	N	0.703723	NA	0.235864	NA	0.779016	N	6.7E-5	N	-8.25	111	43	0.279	111	0	0.000	4.54384707465550639e-12	0.279	---	133,97,36,0.271	93,93,0,0.000	9.174	60
chrX	136112667	136112667	C	T	exonic	GPR101		synonymous SNV	GPR101:NM_054021:exon1:c.G1167A:p.L389L	Score=595;Name=lod=349																			168	37	0.180	169	0	0.000	6.80347442509536379e-11	0.459	---	186,153,33,0.177	148,148,0,0.000	8.871	13.759
chrX	151936062	151936062	C	A	exonic	MAGEA3		nonsynonymous SNV	MAGEA3:NM_005362:exon3:c.G105T:p.E35D		Score=0.991089;Name=chrX:151847040						0.01	0.15775	N	0.97	D	0.988	D	0.001987	N	1.0	D	-1.11	43	10	0.189	52	0	0.000	0.00122429847400142448	0.000	---	54,44,10,0.185	53,53,0,0.000	2.908	3.098
chrX	153995631	153995631	T	C	exonic	DKC1		nonsynonymous SNV	DKC1:NM_001142463:exon7:c.T614C:p.I205T,DKC1:NM_001363:exon7:c.T614C:p.I205T	Score=428;Name=lod=73							0	0.998151	C	0.99	D	0.062	B	0.975948	N	0.996265	D	5.4	148	45	0.233	144	0	0.000	1.51225772601205413e-12	0.467	---	151,114,36,0.240	108,108,0,0.000	9.063	60