Raw file Experiment Enzyme Enzyme mode Enzyme first search Enzyme mode first search Use enzyme first search Variable modifications Multi modifications Variable modifications first search Use variable modifications first search Requantify Multiplicity Max. missed cleavages Labels0 LC-MS run type Time-dependent recalibration MS MS/MS MS3 MS/MS Submitted MS/MS Submitted (SIL) MS/MS Submitted (ISO) MS/MS Submitted (PEAK) MS/MS Identified MS/MS Identified (SIL) MS/MS Identified (ISO) MS/MS Identified (PEAK) MS/MS Identified [%] MS/MS Identified (SIL) [%] MS/MS Identified (ISO) [%] MS/MS Identified (PEAK) [%] Peptide Sequences Identified Peaks Peaks Sequenced Peaks Sequenced [%] Peaks Repeatedly Sequenced Peaks Repeatedly Sequenced [%] Isotope Patterns Isotope Patterns Sequenced Isotope Patterns Sequenced (z>1) Isotope Patterns Sequenced [%] Isotope Patterns Sequenced (z>1) [%] Isotope Patterns Repeatedly Sequenced Isotope Patterns Repeatedly Sequenced [%] Recalibrated Av. Absolute Mass Deviation [ppm] Mass Standard Deviation [ppm] Av. Absolute Mass Deviation [mDa] Mass Standard Deviation [mDa] Label free norm param B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 RPOB_TEV_PD04_rep01 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7135 17986 0 19572 16400 0 3172 6642 6384 0 258 33.94 38.93 NaN 8.13 3257 663009 16672 2.51 749 4.49 70742 14841 14534 20.98 27.04 1122 7.56 + 0.34099 0.49743 0.22776 0.34974 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 RPOB_TEV_PD04_rep02 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7578 16647 0 18256 15038 0 3218 6085 5847 0 238 33.33 38.88 NaN 7.4 3189 685625 15356 2.24 696 4.53 72771 13619 13313 18.71 24.56 1001 7.35 + 0.35171 0.50524 0.23058 0.35617 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 RPOB_TEV_PD04_rep03 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7541 16883 0 18613 15153 0 3460 6193 5895 0 298 33.27 38.9 NaN 8.61 3236 702194 15583 2.22 680 4.36 74242 13724 13398 18.49 24.27 999 7.28 + 0.34716 0.50523 0.22751 0.34727 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 NUSG_TEV_PD04_rep01 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7102 18167 0 19245 17089 0 2156 7875 7700 0 175 40.92 45.06 NaN 8.12 5322 646602 16979 2.63 676 3.98 75337 15648 15328 20.77 27.6 933 5.96 + 0.30744 0.46269 0.20167 0.31414 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 NUSG_TEV_PD04_rep02 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7108 17995 0 19031 16959 0 2072 7776 7612 0 164 40.86 44.88 NaN 7.92 5300 658732 16866 2.56 661 3.92 77054 15618 15265 20.27 27.06 890 5.7 + 0.31466 0.4708 0.20625 0.32297 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 NUSG_TEV_PD04_rep03 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7117 18029 0 19031 17027 0 2004 7754 7587 0 167 40.74 44.56 NaN 8.33 5285 656864 16883 2.57 678 4.02 77238 15624 15285 20.23 26.9 931 5.96 + 0.31832 0.48554 0.20996 0.3387 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 NUSG_SUP_PD04_rep01 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6813 23400 0 24181 22619 0 1562 14432 14184 0 248 59.68 62.71 NaN 15.88 11457 816367 22668 2.78 514 2.27 115687 21688 21389 18.75 22.89 706 3.26 + 0.31298 0.49978 0.20605 0.33785 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 NUSG_SUP_PD04_rep02 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6813 23308 0 24070 22546 0 1524 14322 14053 0 269 59.5 62.33 NaN 17.65 11562 812072 22585 2.78 504 2.23 115671 21598 21295 18.67 22.73 726 3.36 + 0.30851 0.48557 0.20483 0.33488 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 NUSG_SUP_PD04_rep03 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6799 23316 0 24095 22537 0 1558 14418 14148 0 270 59.84 62.78 NaN 17.33 11534 815679 22592 2.77 519 2.3 115580 21596 21282 18.68 22.79 727 3.37 + 0.31318 0.49746 0.2071 0.34226 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 YACL_TEV_PD04_rep01 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7146 17864 0 19053 16675 0 2378 6806 6655 0 151 35.72 39.91 NaN 6.35 4099 611487 16681 2.73 699 4.19 68680 15237 14862 22.19 28.97 1006 6.6 + 0.31851 0.48143 0.21025 0.33472 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 YACL_TEV_PD04_rep02 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7119 17907 0 19036 16778 0 2258 6780 6625 0 155 35.62 39.49 NaN 6.86 4100 611274 16723 2.74 698 4.17 67279 15337 15007 22.8 29.12 993 6.47 + 0.31968 0.47564 0.21215 0.33153 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 YACL_TEV_PD04_rep03 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7090 18008 0 19183 16833 0 2350 6774 6611 0 163 35.31 39.27 NaN 6.94 4116 611662 16764 2.74 724 4.32 67783 15330 14960 22.62 28.86 1033 6.74 + 0.32671 0.48707 0.21718 0.33946 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 YACL_SUP_PD04_rep01 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6754 23182 0 23896 22468 0 1428 15094 14826 0 268 63.17 65.99 NaN 18.77 12071 769640 22437 2.92 534 2.38 110824 21503 21187 19.4 24.31 747 3.47 + 0.30356 0.48746 0.2026 0.33938 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 YACL_SUP_PD04_rep02 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6743 23194 0 23903 22485 0 1418 15138 14868 0 270 63.33 66.12 NaN 19.04 12100 779338 22463 2.88 525 2.34 111264 21535 21215 19.35 24.32 732 3.4 + 0.30718 0.49774 0.20426 0.34355 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 YACL_SUP_PD04_rep03 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6725 23125 0 23795 22455 0 1340 15066 14800 0 266 63.32 65.91 NaN 19.85 12066 773494 22373 2.89 545 2.44 111478 21476 21147 19.26 24.19 744 3.46 + 0.30706 0.49288 0.20489 0.34037 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 K12_TEV_PD04_rep01 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7901 15272 0 16158 14386 0 1772 5610 5548 0 62 34.72 38.57 NaN 3.5 4295 695428 14484 2.08 405 2.8 80909 13422 13069 16.59 22.68 608 4.53 + 0.34061 0.50057 0.22387 0.35208 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 K12_TEV_PD04_rep02 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7892 15316 0 16219 14413 0 1806 5612 5512 0 100 34.6 38.24 NaN 5.54 4274 698473 14525 2.08 423 2.91 81269 13418 13051 16.51 22.46 655 4.88 + 0.32323 0.46865 0.21017 0.31984 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 K12_TEV_PD04_rep03 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 7922 15250 0 16107 14393 0 1714 5592 5501 0 91 34.72 38.22 NaN 5.31 4242 705222 14449 2.05 414 2.87 81537 13412 13056 16.45 22.42 631 4.7 + 0.34429 0.49627 0.22535 0.34567 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 K12_SUP_PD04_rep01 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6790 23503 0 24315 22691 0 1624 15486 15214 0 272 63.69 67.05 NaN 16.75 12263 785054 22743 2.9 538 2.37 112760 21701 21350 19.25 24.25 766 3.53 + 0.30142 0.48145 0.20334 0.34102 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 K12_SUP_PD04_rep02 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6797 23342 0 24107 22577 0 1530 15523 15255 0 268 64.39 67.57 NaN 17.52 12256 789609 22566 2.86 559 2.48 112935 21558 21236 19.09 24.1 787 3.65 + 0.30451 0.48511 0.20376 0.33614 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 K12_SUP_PD04_rep03 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6772 23231 0 23999 22463 0 1536 15434 15157 0 277 64.31 67.48 NaN 18.03 12216 786230 22476 2.86 540 2.4 112726 21457 21142 19.03 24.05 773 3.6 + 0.30377 0.48458 0.20483 0.34101 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 RPOB_SUP_PD04_rep01 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6735 22428 0 23112 21744 0 1368 14656 14401 0 255 63.41 66.23 NaN 18.64 11781 700166 21730 3.1 516 2.37 104605 20840 20520 19.92 24.97 700 3.36 + 0.29794 0.48292 0.19828 0.3337 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 RPOB_SUP_PD04_rep02 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6742 22287 0 22954 21620 0 1334 14525 14272 0 253 63.28 66.01 NaN 18.97 11674 691625 21605 3.12 497 2.3 104247 20726 20389 19.88 24.9 692 3.34 + 0.29771 0.47673 0.19788 0.32842 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 RPOB_SUP_PD04_rep03 Trypsin/P Specific False Oxidation (M);Acetyl (Protein N-term) False False 1 2 Standard 6724 22227 0 22885 21569 0 1316 14555 14289 0 266 63.6 66.25 NaN 20.21 11660 674942 21551 3.19 499 2.32 102750 20685 20377 20.13 25.21 690 3.34 + 0.29908 0.48157 0.19863 0.33368 K12_SUP_PD04_rep01 12263 K12_SUP_PD04_rep02 12256 K12_SUP_PD04_rep03 12216 K12_TEV_PD04_rep01 4295 K12_TEV_PD04_rep02 4274 K12_TEV_PD04_rep03 4242 NUSG_SUP_PD04_rep01 11457 NUSG_SUP_PD04_rep02 11562 NUSG_SUP_PD04_rep03 11534 NUSG_TEV_PD04_rep01 5322 NUSG_TEV_PD04_rep02 5300 NUSG_TEV_PD04_rep03 5285 RPOB_SUP_PD04_rep01 11781 RPOB_SUP_PD04_rep02 11674 RPOB_SUP_PD04_rep03 11660 RPOB_TEV_PD04_rep01 3257 RPOB_TEV_PD04_rep02 3189 RPOB_TEV_PD04_rep03 3236 YACL_SUP_PD04_rep01 12071 YACL_SUP_PD04_rep02 12100 YACL_SUP_PD04_rep03 12066 YACL_TEV_PD04_rep01 4099 YACL_TEV_PD04_rep02 4100 YACL_TEV_PD04_rep03 4116 Total 169858 481867 0 504816 458918 0 45898 258148 252944 0 5204 51.14 55.12 NaN 11.34 23173 17140788 2225368 431593 423657 19.39 24.75 19592 4.54 0.31147 0.48709 0.20679 0.33751